BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16761
(261 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|242013777|ref|XP_002427577.1| Orphan nuclear receptor NR2E1, putative [Pediculus humanus
corporis]
gi|212511992|gb|EEB14839.1| Orphan nuclear receptor NR2E1, putative [Pediculus humanus
corporis]
Length = 403
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/179 (43%), Positives = 111/179 (62%), Gaps = 9/179 (5%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGEL------VESCKSRHVDIEEEVIRFQSVLNEFKV 139
LLL ESWRELF+L +Q++ L+L +L V + + + I +EV +FQ L +FK
Sbjct: 225 LLLEESWRELFVLSASQFMLPLELVDLLTAHTTVTANSEKALTIAQEVKQFQETLIKFKQ 284
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQI 199
L++D +EY +RAI LFKT + +N +SS+ S L D+ +AA+Q HTQ+
Sbjct: 285 LHVDIHEYACLRAIVLFKTSFDPS--NNTVTSSTAPSSSGEGKTLHDLAEVAAVQDHTQL 342
Query: 200 FLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 258
LNKYI +P+QP RF K+ L+LP L+S+ + +EELFFR IG N I++ I MYK
Sbjct: 343 TLNKYISAAHPTQPFRFGKLLLLLPSLRSVSNNTIEELFFRRTIG-NIPIERIICDMYK 400
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 53/81 (65%), Gaps = 6/81 (7%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGEL------VESCKSRHVDIEEEVIRFQSVLNEFKV 55
LLL ESWRELF+L +Q++ L+L +L V + + + I +EV +FQ L +FK
Sbjct: 225 LLLEESWRELFVLSASQFMLPLELVDLLTAHTTVTANSEKALTIAQEVKQFQETLIKFKQ 284
Query: 56 LNIDPYEYDYIRAITLFKTAF 76
L++D +EY +RAI LFKT+F
Sbjct: 285 LHVDIHEYACLRAIVLFKTSF 305
>gi|291232333|ref|XP_002736112.1| PREDICTED: tailless-like [Saccoglossus kowalevskii]
Length = 308
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 102/186 (54%), Gaps = 28/186 (15%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRH-------------VDIEEEVIRFQS 132
LLL E WRELF+LG AQ+ +++G L+ + H V I E+ FQ
Sbjct: 134 LLLEEGWRELFVLGAAQWQMCMEIGPLLAAAGQLHFRLSTEHTNPEKIVAIMSEMRTFQE 193
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
++ +FK + +D EY ++ I +FK+V D ++ R +RD +A
Sbjct: 194 IIAKFKQMQVDATEYACLKGIIIFKSVFPDSPQEIRG--------------VRDFHGVAT 239
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
+Q Q+ L+KYIHT YP+QP RF K+ L+LP+L++I +EELFFR IG N I++
Sbjct: 240 LQDQAQLTLSKYIHTKYPTQPFRFGKLLLMLPQLRAIRPSTIEELFFRKTIG-NIPIERL 298
Query: 253 IWHMYK 258
+ MYK
Sbjct: 299 LCDMYK 304
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 14/97 (14%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRH-------------VDIEEEVIRFQS 48
LLL E WRELF+LG AQ+ +++G L+ + H V I E+ FQ
Sbjct: 134 LLLEEGWRELFVLGAAQWQMCMEIGPLLAAAGQLHFRLSTEHTNPEKIVAIMSEMRTFQE 193
Query: 49 VLNEFKVLNIDPYEYDYIRAITLFKTAFT-SRRELAG 84
++ +FK + +D EY ++ I +FK+ F S +E+ G
Sbjct: 194 IIAKFKQMQVDATEYACLKGIIIFKSVFPDSPQEIRG 230
>gi|259013325|ref|NP_001158362.1| tailless [Saccoglossus kowalevskii]
gi|32307797|gb|AAP79295.1| tailless [Saccoglossus kowalevskii]
Length = 361
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 104/181 (57%), Gaps = 23/181 (12%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESC--KSRHVDIEE------EVIRFQSVLNEF 137
LLL E WRELF+LG AQ+ +++G L+ + + H + E+ E+ FQ ++ +F
Sbjct: 192 LLLEEGWRELFVLGAAQWQMCMEIGPLLAAAGLSTEHTNPEKIVAIMSEMRTFQEIIAKF 251
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
K + +D EY ++ I +FK+V D ++ R +RD +A +Q
Sbjct: 252 KQMQVDATEYACLKGIIIFKSVFPDSPQEIRG--------------VRDFHGVATLQDQA 297
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ L+KYIHT YP+QP RF K+ L+LP+L++I +EELFFR IG N I++ + MY
Sbjct: 298 QLTLSKYIHTKYPTQPFRFGKLLLMLPQLRAIRPSTIEELFFRKTIG-NIPIERLLCDMY 356
Query: 258 K 258
K
Sbjct: 357 K 357
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 54/92 (58%), Gaps = 9/92 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESC--KSRHVDIEE------EVIRFQSVLNEF 53
LLL E WRELF+LG AQ+ +++G L+ + + H + E+ E+ FQ ++ +F
Sbjct: 192 LLLEEGWRELFVLGAAQWQMCMEIGPLLAAAGLSTEHTNPEKIVAIMSEMRTFQEIIAKF 251
Query: 54 KVLNIDPYEYDYIRAITLFKTAFT-SRRELAG 84
K + +D EY ++ I +FK+ F S +E+ G
Sbjct: 252 KQMQVDATEYACLKGIIIFKSVFPDSPQEIRG 283
>gi|443724903|gb|ELU12704.1| hypothetical protein CAPTEDRAFT_226190 [Capitella teleta]
Length = 393
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 100/187 (53%), Gaps = 28/187 (14%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCK------------SRHVDIEEEVIRFQSV 133
LLL E WRELF+LG AQ+ +D L+ S VD+ E+ Q +
Sbjct: 221 LLLEEGWRELFVLGAAQFQMPIDPAPLLASAGISSPDKSPSSSSDSTVDVVGEIRALQDI 280
Query: 134 LNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAI 193
+ +FK + +D EY ++ I +FKT + +NRS LRDV I A+
Sbjct: 281 IAKFKAMQVDATEYACLKGIVIFKTALSG-ASENRS--------------LRDVHTIVAL 325
Query: 194 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTI 253
Q Q+ L KYI + YP+QP RF K+ L+LP+L+SI +EELFF+ IG N I++ +
Sbjct: 326 QDQAQLTLGKYIQSSYPTQPFRFGKLLLMLPQLRSISGQTIEELFFKKTIG-NIPIERLM 384
Query: 254 WHMYKNA 260
MYK++
Sbjct: 385 VDMYKSS 391
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 19/126 (15%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCK------------SRHVDIEEEVIRFQSV 49
LLL E WRELF+LG AQ+ +D L+ S VD+ E+ Q +
Sbjct: 221 LLLEEGWRELFVLGAAQFQMPIDPAPLLASAGISSPDKSPSSSSDSTVDVVGEIRALQDI 280
Query: 50 LNEFKVLNIDPYEYDYIRAITLFKTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDL 109
+ +FK + +D EY ++ I +FKTA + E S R++ + Q L L
Sbjct: 281 IAKFKAMQVDATEYACLKGIVIFKTALSGASE-------NRSLRDVHTIVALQDQAQLTL 333
Query: 110 GELVES 115
G+ ++S
Sbjct: 334 GKYIQS 339
>gi|321478244|gb|EFX89201.1| tailless-like protein [Daphnia pulex]
Length = 337
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 108/202 (53%), Gaps = 33/202 (16%)
Query: 65 YIRAITLFKTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELV------ESCKS 118
+ +++ F T SR ++ +LL ESWRELF+LG AQ+ ++ G L+ S
Sbjct: 161 WAKSVPAF-TTLPSRDQI---ILLEESWRELFVLGAAQFTLPIEAGTLMTALGLSSSPTE 216
Query: 119 RHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSE 178
R + + E+ FQ + +FK +N+D EY +RA+ LFKT
Sbjct: 217 RQLGLLSEIKAFQETVAKFKQMNVDATEYACLRAVILFKT-------------------- 256
Query: 179 HPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELF 238
+ LRD+ + +Q Q+ L++Y+ T YP+QP RF ++ L+LP L++I +EELF
Sbjct: 257 --SAGLRDIPSAVNLQDQAQLTLSRYVSTAYPNQPLRFGRLLLLLPALRTIAPSTIEELF 314
Query: 239 FRNIIGHNTTIKKTIWHMYKNA 260
FR IG N I++ I MYK+
Sbjct: 315 FRKTIG-NIPIERIISDMYKSG 335
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 6/80 (7%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELV------ESCKSRHVDIEEEVIRFQSVLNEFKV 55
+LL ESWRELF+LG AQ+ ++ G L+ S R + + E+ FQ + +FK
Sbjct: 178 ILLEESWRELFVLGAAQFTLPIEAGTLMTALGLSSSPTERQLGLLSEIKAFQETVAKFKQ 237
Query: 56 LNIDPYEYDYIRAITLFKTA 75
+N+D EY +RA+ LFKT+
Sbjct: 238 MNVDATEYACLRAVILFKTS 257
>gi|405978560|gb|EKC42940.1| Nuclear receptor subfamily 2 group E member 1 [Crassostrea gigas]
Length = 380
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 102/183 (55%), Gaps = 22/183 (12%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELV--------ESCKSRHVDIEEEVIRFQSVLNEF 137
+LL E WRELF+LG AQ+ ++ G L+ ++ + V E+ Q ++++F
Sbjct: 210 MLLEEGWRELFVLGAAQFQMPVEAGPLLAVAGLNTEDAPAEKVVSFMTEIRALQEIISKF 269
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
K L +DP E+ ++ I LFKT + S +SD+ S L+D+ +A +Q
Sbjct: 270 KSLQVDPTEFACLKGIVLFKTAFGN-------SQNSDEKS------LQDIHTVAGLQDQA 316
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ L+KYI YP+QP RF K+ L +P LK++ + ELFFR IG N I++ + M+
Sbjct: 317 QLTLSKYIQATYPTQPFRFGKLLLSIPTLKTVCGNTIAELFFRKTIG-NIPIERLLIDMF 375
Query: 258 KNA 260
K++
Sbjct: 376 KSS 378
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 8/83 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELV--------ESCKSRHVDIEEEVIRFQSVLNEF 53
+LL E WRELF+LG AQ+ ++ G L+ ++ + V E+ Q ++++F
Sbjct: 210 MLLEEGWRELFVLGAAQFQMPVEAGPLLAVAGLNTEDAPAEKVVSFMTEIRALQEIISKF 269
Query: 54 KVLNIDPYEYDYIRAITLFKTAF 76
K L +DP E+ ++ I LFKTAF
Sbjct: 270 KSLQVDPTEFACLKGIVLFKTAF 292
>gi|270002751|gb|EEZ99198.1| tailless [Tribolium castaneum]
Length = 406
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 106/202 (52%), Gaps = 23/202 (11%)
Query: 65 YIRAITLFKTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESC------KS 118
++R+I AFT LLL ESW +LF+LG AQ+LP +D LVE+C
Sbjct: 213 WVRSIP----AFTCLPLSDQLLLLEESWLDLFVLGAAQFLPLMDFSVLVEACGVLQQEPH 268
Query: 119 RHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSE 178
R +EV FQ L + +D +E+ +RAI LFKT E + SSSS+
Sbjct: 269 RRDAFLKEVADFQETLKKISQFQLDAHEFACLRAIVLFKTSFE------KPSSSSNQEKT 322
Query: 179 HPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPR-LKSIPSLVLEEL 237
ES I+ IQ Q+ LNK++ T YP QP RF KI L++ ++I +E+L
Sbjct: 323 TTES-----AKISVIQDDAQMRLNKHVTTTYPKQPLRFGKILLLVSSTFRTISGRTIEDL 377
Query: 238 FFRNIIGHNTTIKKTIWHMYKN 259
FF+ +I +T I I +MYKN
Sbjct: 378 FFKKVI-RDTPIVAIISNMYKN 398
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Query: 6 ESWRELFILGLAQYLPSLDLGELVESC------KSRHVDIEEEVIRFQSVLNEFKVLNID 59
ESW +LF+LG AQ+LP +D LVE+C R +EV FQ L + +D
Sbjct: 234 ESWLDLFVLGAAQFLPLMDFSVLVEACGVLQQEPHRRDAFLKEVADFQETLKKISQFQLD 293
Query: 60 PYEYDYIRAITLFKTAF 76
+E+ +RAI LFKT+F
Sbjct: 294 AHEFACLRAIVLFKTSF 310
>gi|86515358|ref|NP_001034502.1| tailless [Tribolium castaneum]
gi|8096685|gb|AAF71999.1|AF219117_1 tailless ortholog [Tribolium castaneum]
Length = 406
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 106/202 (52%), Gaps = 23/202 (11%)
Query: 65 YIRAITLFKTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESC------KS 118
++R+I AFT LLL ESW +LF+LG AQ+LP +D LVE+C
Sbjct: 213 WVRSIP----AFTCLPLSDQLLLLEESWLDLFVLGAAQFLPLMDFSVLVEACGVLQQEPH 268
Query: 119 RHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSE 178
R +EV FQ L + +D +E+ +RAI LFKT E + SSSS+
Sbjct: 269 RRDAFLKEVADFQETLKKISQFQLDAHEFACLRAIVLFKTSFE------KPSSSSNQEKT 322
Query: 179 HPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPR-LKSIPSLVLEEL 237
ES I+ IQ Q+ LNK++ T YP QP RF KI L++ ++I +E+L
Sbjct: 323 TTES-----AKISVIQDDAQMRLNKHVTTTYPKQPLRFGKILLLVSSTFRTISGRTIEDL 377
Query: 238 FFRNIIGHNTTIKKTIWHMYKN 259
FF+ +I +T I I +MYKN
Sbjct: 378 FFKKVI-RDTPIVAIISNMYKN 398
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Query: 6 ESWRELFILGLAQYLPSLDLGELVESC------KSRHVDIEEEVIRFQSVLNEFKVLNID 59
ESW +LF+LG AQ+LP +D LVE+C R +EV FQ L + +D
Sbjct: 234 ESWLDLFVLGAAQFLPLMDFSVLVEACGVLQQEPHRRDAFLKEVADFQETLKKISQFQLD 293
Query: 60 PYEYDYIRAITLFKTAF 76
+E+ +RAI LFKT+F
Sbjct: 294 AHEFACLRAIVLFKTSF 310
>gi|149046956|gb|EDL99704.1| rCG58537 [Rattus norvegicus]
Length = 385
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 98/183 (53%), Gaps = 23/183 (12%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 137
+LL ++WRELF+LG+AQ+ +D L V S + D ++ E+ Q V+ F
Sbjct: 216 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNSDNTDSQKLNKIISEIQALQEVVARF 275
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ L +D E+ ++ I FK V + RS R+ AIAA+Q
Sbjct: 276 RQLRLDATEFACLKCIVTFKAVPTHSGSELRS--------------FRNAAAIAALQDEA 321
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ LN YIHT YP+QP RF K+ L+LP L+SI +EE+FF+ IG N I + + MY
Sbjct: 322 QLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIG-NVPITRLLSDMY 380
Query: 258 KNA 260
K++
Sbjct: 381 KSS 383
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 53
+LL ++WRELF+LG+AQ+ +D L V S + D ++ E+ Q V+ F
Sbjct: 216 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNSDNTDSQKLNKIISEIQALQEVVARF 275
Query: 54 KVLNIDPYEYDYIRAITLFKTAFT 77
+ L +D E+ ++ I FK T
Sbjct: 276 RQLRLDATEFACLKCIVTFKAVPT 299
>gi|354469258|ref|XP_003497047.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Cricetulus griseus]
Length = 518
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 98/183 (53%), Gaps = 23/183 (12%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 137
+LL ++WRELF+LG+AQ+ +D L V S + D ++ E+ Q V+ F
Sbjct: 349 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNSDNTDSQKLNKIISEIQALQEVVARF 408
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ L +D E+ ++ I FK V + RS R+ AIAA+Q
Sbjct: 409 RQLRLDATEFACLKCIVTFKAVPTHSGSELRS--------------FRNAAAIAALQDEA 454
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ LN YIHT YP+QP RF K+ L+LP L+SI +EE+FF+ IG N I + + MY
Sbjct: 455 QLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIG-NVPITRLLSDMY 513
Query: 258 KNA 260
K++
Sbjct: 514 KSS 516
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 53
+LL ++WRELF+LG+AQ+ +D L V S + D ++ E+ Q V+ F
Sbjct: 349 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNSDNTDSQKLNKIISEIQALQEVVARF 408
Query: 54 KVLNIDPYEYDYIRAITLFKTAFT 77
+ L +D E+ ++ I FK T
Sbjct: 409 RQLRLDATEFACLKCIVTFKAVPT 432
>gi|344242733|gb|EGV98836.1| Nuclear receptor subfamily 2 group E member 1 [Cricetulus griseus]
Length = 323
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 98/183 (53%), Gaps = 23/183 (12%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 137
+LL ++WRELF+LG+AQ+ +D L V S + D ++ E+ Q V+ F
Sbjct: 154 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNSDNTDSQKLNKIISEIQALQEVVARF 213
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ L +D E+ ++ I FK V + RS R+ AIAA+Q
Sbjct: 214 RQLRLDATEFACLKCIVTFKAVPTHSGSELRS--------------FRNAAAIAALQDEA 259
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ LN YIHT YP+QP RF K+ L+LP L+SI +EE+FF+ IG N I + + MY
Sbjct: 260 QLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIG-NVPITRLLSDMY 318
Query: 258 KNA 260
K++
Sbjct: 319 KSS 321
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 53
+LL ++WRELF+LG+AQ+ +D L V S + D ++ E+ Q V+ F
Sbjct: 154 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNSDNTDSQKLNKIISEIQALQEVVARF 213
Query: 54 KVLNIDPYEYDYIRAITLFKTAFT 77
+ L +D E+ ++ I FK T
Sbjct: 214 RQLRLDATEFACLKCIVTFKAVPT 237
>gi|449497928|ref|XP_002192943.2| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Taeniopygia guttata]
Length = 532
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 98/183 (53%), Gaps = 23/183 (12%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 137
+LL ++WRELF+LG+AQ+ +D L V S + D ++ E+ Q V+ F
Sbjct: 363 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNSDNTDSQKLNKIISEIQALQEVVARF 422
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ L +D E+ ++ I FK V + RS R+ AIAA+Q
Sbjct: 423 RQLRLDATEFACLKCIVTFKAVPTHSGSELRS--------------FRNAAAIAALQDEA 468
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ LN YIHT YP+QP RF K+ L+LP L+SI +EE+FF+ IG N I + + MY
Sbjct: 469 QLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIG-NVPITRLLSDMY 527
Query: 258 KNA 260
K++
Sbjct: 528 KSS 530
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 53
+LL ++WRELF+LG+AQ+ +D L V S + D ++ E+ Q V+ F
Sbjct: 363 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNSDNTDSQKLNKIISEIQALQEVVARF 422
Query: 54 KVLNIDPYEYDYIRAITLFKTAFT 77
+ L +D E+ ++ I FK T
Sbjct: 423 RQLRLDATEFACLKCIVTFKAVPT 446
>gi|395534716|ref|XP_003769385.1| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Sarcophilus harrisii]
Length = 385
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 97/183 (53%), Gaps = 23/183 (12%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 137
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 216 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGENTDSQKLSKIISEIQALQEVVARF 275
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ L +D E+ ++ I FK V + RS R+ AIAA+Q
Sbjct: 276 RQLRLDATEFACLKCIVTFKAVPTHSGSELRS--------------FRNAAAIAALQDEA 321
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ LN YIHT YP+QP RF K+ L+LP L+SI +EE+FF+ IG N I + + MY
Sbjct: 322 QLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIG-NVPITRLLSDMY 380
Query: 258 KNA 260
K++
Sbjct: 381 KSS 383
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 53
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 216 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGENTDSQKLSKIISEIQALQEVVARF 275
Query: 54 KVLNIDPYEYDYIRAITLFKTAFT 77
+ L +D E+ ++ I FK T
Sbjct: 276 RQLRLDATEFACLKCIVTFKAVPT 299
>gi|126310401|ref|XP_001368385.1| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Monodelphis domestica]
Length = 385
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 97/183 (53%), Gaps = 23/183 (12%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 137
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 216 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGENTDSQKLSKIISEIQALQEVVARF 275
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ L +D E+ ++ I FK V + RS R+ AIAA+Q
Sbjct: 276 RQLRLDATEFACLKCIVTFKAVPTHSGSELRS--------------FRNAAAIAALQDEA 321
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ LN YIHT YP+QP RF K+ L+LP L+SI +EE+FF+ IG N I + + MY
Sbjct: 322 QLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIG-NVPITRLLSDMY 380
Query: 258 KNA 260
K++
Sbjct: 381 KSS 383
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 53
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 216 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGENTDSQKLSKIISEIQALQEVVARF 275
Query: 54 KVLNIDPYEYDYIRAITLFKTAFT 77
+ L +D E+ ++ I FK T
Sbjct: 276 RQLRLDATEFACLKCIVTFKAVPT 299
>gi|444709054|gb|ELW50086.1| Nuclear receptor subfamily 2 group E member 1 [Tupaia chinensis]
Length = 441
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 97/183 (53%), Gaps = 23/183 (12%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 137
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 272 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARF 331
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ L +D E+ ++ I FK V + RS R+ AIAA+Q
Sbjct: 332 RQLRLDATEFACLKCIVTFKAVPTHSGSELRS--------------FRNAAAIAALQDEA 377
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ LN YIHT YP+QP RF K+ L+LP L+SI +EE+FF+ IG N I + + MY
Sbjct: 378 QLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIG-NVPITRLLSDMY 436
Query: 258 KNA 260
K++
Sbjct: 437 KSS 439
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 53
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 272 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARF 331
Query: 54 KVLNIDPYEYDYIRAITLFKTAFT 77
+ L +D E+ ++ I FK T
Sbjct: 332 RQLRLDATEFACLKCIVTFKAVPT 355
>gi|449273615|gb|EMC83088.1| Nuclear receptor subfamily 2 group E member 1, partial [Columba
livia]
Length = 376
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 97/183 (53%), Gaps = 23/183 (12%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 137
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 207 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARF 266
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ L +D E+ ++ I FK V + RS R+ AIAA+Q
Sbjct: 267 RQLRLDATEFACLKCIVTFKAVPTHSGSELRS--------------FRNAAAIAALQDEA 312
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ LN YIHT YP+QP RF K+ L+LP L+SI +EE+FF+ IG N I + + MY
Sbjct: 313 QLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIG-NVPITRLLSDMY 371
Query: 258 KNA 260
K++
Sbjct: 372 KSS 374
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 53
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 207 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARF 266
Query: 54 KVLNIDPYEYDYIRAITLFKTAFT 77
+ L +D E+ ++ I FK T
Sbjct: 267 RQLRLDATEFACLKCIVTFKAVPT 290
>gi|22726205|ref|NP_689415.1| nuclear receptor subfamily 2 group E member 1 [Mus musculus]
gi|6094489|sp|Q64104.1|NR2E1_MOUSE RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll; Short=mTll
gi|2143507|pir||I53158 orphan nuclear receptor homolog - mouse
gi|998678|gb|AAB34090.1| orphan nuclear receptor homolog [Mus sp.]
gi|21668101|gb|AAM74229.1| nuclear receptor 2E1 [Mus musculus]
gi|34849469|gb|AAH57104.1| Nuclear receptor subfamily 2, group E, member 1 [Mus musculus]
gi|74205430|dbj|BAE21029.1| unnamed protein product [Mus musculus]
gi|148673056|gb|EDL05003.1| nuclear receptor subfamily 2, group E, member 1 [Mus musculus]
Length = 385
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 98/183 (53%), Gaps = 23/183 (12%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 137
+LL ++WRELF+LG+AQ+ +D L V + + D ++ E+ Q V+ F
Sbjct: 216 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNTDNTDSQKLNKIISEIQALQEVVARF 275
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ L +D E+ ++ I FK V + RS R+ AIAA+Q
Sbjct: 276 RQLRLDATEFACLKCIVTFKAVPTHSGSELRS--------------FRNAAAIAALQDEA 321
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ LN YIHT YP+QP RF K+ L+LP L+SI +EE+FF+ IG N I + + MY
Sbjct: 322 QLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIG-NVPITRLLSDMY 380
Query: 258 KNA 260
K++
Sbjct: 381 KSS 383
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 53
+LL ++WRELF+LG+AQ+ +D L V + + D ++ E+ Q V+ F
Sbjct: 216 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNTDNTDSQKLNKIISEIQALQEVVARF 275
Query: 54 KVLNIDPYEYDYIRAITLFKTAFT 77
+ L +D E+ ++ I FK T
Sbjct: 276 RQLRLDATEFACLKCIVTFKAVPT 299
>gi|351702072|gb|EHB04991.1| Nuclear receptor subfamily 2 group E member 1 [Heterocephalus
glaber]
Length = 445
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 97/183 (53%), Gaps = 23/183 (12%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 137
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 276 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARF 335
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ L +D E+ ++ I FK V + RS R+ AIAA+Q
Sbjct: 336 RQLRLDATEFACLKCIVTFKAVPPHSGSELRS--------------FRNAAAIAALQDEA 381
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ LN YIHT YP+QP RF K+ L+LP L+SI +EE+FF+ IG N I + + MY
Sbjct: 382 QLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIG-NVPITRLLSDMY 440
Query: 258 KNA 260
K++
Sbjct: 441 KSS 443
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 53
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 276 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARF 335
Query: 54 KVLNIDPYEYDYIRAITLFKT 74
+ L +D E+ ++ I FK
Sbjct: 336 RQLRLDATEFACLKCIVTFKA 356
>gi|197215627|gb|ACH53021.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Otolemur garnettii]
Length = 385
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 97/183 (53%), Gaps = 23/183 (12%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 137
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 216 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARF 275
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ L +D E+ ++ I FK V + RS R+ AIAA+Q
Sbjct: 276 RQLRLDATEFACLKCIVTFKAVPTHSGSELRS--------------FRNAAAIAALQDEA 321
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ LN YIHT YP+QP RF K+ L+LP L+SI +EE+FF+ IG N I + + MY
Sbjct: 322 QLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIG-NVPITRLLSDMY 380
Query: 258 KNA 260
K++
Sbjct: 381 KSS 383
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 53
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 216 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARF 275
Query: 54 KVLNIDPYEYDYIRAITLFKTAFT 77
+ L +D E+ ++ I FK T
Sbjct: 276 RQLRLDATEFACLKCIVTFKAVPT 299
>gi|348560562|ref|XP_003466082.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Cavia porcellus]
Length = 385
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 97/183 (53%), Gaps = 23/183 (12%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 137
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 216 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARF 275
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ L +D E+ ++ I FK V + RS R+ AIAA+Q
Sbjct: 276 RQLRLDATEFACLKCIVTFKAVPTHSGSELRS--------------FRNAAAIAALQDEA 321
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ LN YIHT YP+QP RF K+ L+LP L+SI +EE+FF+ IG N I + + MY
Sbjct: 322 QLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIG-NVPITRLLSDMY 380
Query: 258 KNA 260
K++
Sbjct: 381 KSS 383
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 53
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 216 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARF 275
Query: 54 KVLNIDPYEYDYIRAITLFKTAFT 77
+ L +D E+ ++ I FK T
Sbjct: 276 RQLRLDATEFACLKCIVTFKAVPT 299
>gi|300798463|ref|NP_001179582.1| nuclear receptor subfamily 2 group E member 1 [Bos taurus]
gi|426234591|ref|XP_004011277.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Ovis
aries]
gi|296484166|tpg|DAA26281.1| TPA: nuclear receptor subfamily 2, group E, member 1 [Bos taurus]
Length = 385
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 97/183 (53%), Gaps = 23/183 (12%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 137
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 216 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARF 275
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ L +D E+ ++ I FK V + RS R+ AIAA+Q
Sbjct: 276 RQLRLDATEFACLKCIVTFKAVPTHSGSELRS--------------FRNAAAIAALQDEA 321
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ LN YIHT YP+QP RF K+ L+LP L+SI +EE+FF+ IG N I + + MY
Sbjct: 322 QLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIG-NVPITRLLSDMY 380
Query: 258 KNA 260
K++
Sbjct: 381 KSS 383
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 53
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 216 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARF 275
Query: 54 KVLNIDPYEYDYIRAITLFKTAFT 77
+ L +D E+ ++ I FK T
Sbjct: 276 RQLRLDATEFACLKCIVTFKAVPT 299
>gi|397507811|ref|XP_003824377.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Pan
paniscus]
Length = 385
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 97/183 (53%), Gaps = 23/183 (12%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 137
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 216 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARF 275
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ L +D E+ ++ I FK V + RS R+ AIAA+Q
Sbjct: 276 RQLRLDATEFACLKCIVTFKAVPTHSGSELRS--------------FRNAAAIAALQDEA 321
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ LN YIHT YP+QP RF K+ L+LP L+SI +EE+FF+ IG N I + + MY
Sbjct: 322 QLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIG-NVPITRLLSDMY 380
Query: 258 KNA 260
K++
Sbjct: 381 KSS 383
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 53
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 216 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARF 275
Query: 54 KVLNIDPYEYDYIRAITLFKTAFT 77
+ L +D E+ ++ I FK T
Sbjct: 276 RQLRLDATEFACLKCIVTFKAVPT 299
>gi|169409578|gb|ACA57920.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Callicebus moloch]
Length = 385
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 97/183 (53%), Gaps = 23/183 (12%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 137
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 216 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLSKIISEIQALQEVVARF 275
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ L +D E+ ++ I FK V + RS R+ AIAA+Q
Sbjct: 276 RQLRLDATEFACLKCIVTFKAVPTHSGSELRS--------------FRNAAAIAALQDEA 321
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ LN YIHT YP+QP RF K+ L+LP L+SI +EE+FF+ IG N I + + MY
Sbjct: 322 QLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIG-NVPITRLLSDMY 380
Query: 258 KNA 260
K++
Sbjct: 381 KSS 383
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 53
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 216 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLSKIISEIQALQEVVARF 275
Query: 54 KVLNIDPYEYDYIRAITLFKTAFT 77
+ L +D E+ ++ I FK T
Sbjct: 276 RQLRLDATEFACLKCIVTFKAVPT 299
>gi|284005564|ref|NP_001164794.1| nuclear receptor subfamily 2 group E member 1 [Oryctolagus
cuniculus]
gi|217038306|gb|ACJ76603.1| nuclear receptor subfamily 2 group E member 1 (predicted)
[Oryctolagus cuniculus]
Length = 385
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 97/183 (53%), Gaps = 23/183 (12%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 137
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 216 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKVISEIQALQEVVARF 275
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ L +D E+ ++ I FK V + RS R+ AIAA+Q
Sbjct: 276 RQLRLDATEFACLKCIVTFKAVPTHSGSELRS--------------FRNAAAIAALQDEA 321
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ LN YIHT YP+QP RF K+ L+LP L+SI +EE+FF+ IG N I + + MY
Sbjct: 322 QLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIG-NVPITRLLSDMY 380
Query: 258 KNA 260
K++
Sbjct: 381 KSS 383
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 53
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 216 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKVISEIQALQEVVARF 275
Query: 54 KVLNIDPYEYDYIRAITLFKTAFT 77
+ L +D E+ ++ I FK T
Sbjct: 276 RQLRLDATEFACLKCIVTFKAVPT 299
>gi|395816268|ref|XP_003781627.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Otolemur
garnettii]
Length = 385
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 97/183 (53%), Gaps = 23/183 (12%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 137
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 216 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARF 275
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ L +D E+ ++ I FK V + RS R+ AIAA+Q
Sbjct: 276 RQLRLDATEFACLKCIVTFKAVPTHSGSELRS--------------FRNAAAIAALQDEA 321
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ LN YIHT YP+QP RF K+ L+LP L+SI +EE+FF+ IG N I + + MY
Sbjct: 322 QLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIG-NVPITRLLSDMY 380
Query: 258 KNA 260
K++
Sbjct: 381 KSS 383
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 53
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 216 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARF 275
Query: 54 KVLNIDPYEYDYIRAITLFKTAFT 77
+ L +D E+ ++ I FK T
Sbjct: 276 RQLRLDATEFACLKCIVTFKAVPT 299
>gi|73973687|ref|XP_532253.2| PREDICTED: nuclear receptor subfamily 2 group E member 1 isoform 1
[Canis lupus familiaris]
gi|194216311|ref|XP_001502073.2| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Equus
caballus]
gi|335279315|ref|XP_003353327.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Sus
scrofa]
gi|190402236|gb|ACE77650.1| nuclear receptor subfamily 2, group E, member 1 homolog (predicted)
[Sorex araneus]
Length = 385
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 97/183 (53%), Gaps = 23/183 (12%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 137
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 216 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARF 275
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ L +D E+ ++ I FK V + RS R+ AIAA+Q
Sbjct: 276 RQLRLDATEFACLKCIVTFKAVPTHSGSELRS--------------FRNAAAIAALQDEA 321
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ LN YIHT YP+QP RF K+ L+LP L+SI +EE+FF+ IG N I + + MY
Sbjct: 322 QLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIG-NVPITRLLSDMY 380
Query: 258 KNA 260
K++
Sbjct: 381 KSS 383
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 53
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 216 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARF 275
Query: 54 KVLNIDPYEYDYIRAITLFKTAFT 77
+ L +D E+ ++ I FK T
Sbjct: 276 RQLRLDATEFACLKCIVTFKAVPT 299
>gi|226526921|gb|ACO71279.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Dasypus novemcinctus]
Length = 385
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 97/183 (53%), Gaps = 23/183 (12%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 137
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 216 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARF 275
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ L +D E+ ++ I FK V + RS R+ AIAA+Q
Sbjct: 276 RQLRLDATEFACLKCIVTFKAVPTHSGSELRS--------------FRNAAAIAALQDEA 321
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ LN YIHT YP+QP RF K+ L+LP L+SI +EE+FF+ IG N I + + MY
Sbjct: 322 QLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIG-NVPITRLLSDMY 380
Query: 258 KNA 260
K++
Sbjct: 381 KSS 383
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 53
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 216 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARF 275
Query: 54 KVLNIDPYEYDYIRAITLFKTAFT 77
+ L +D E+ ++ I FK T
Sbjct: 276 RQLRLDATEFACLKCIVTFKAVPT 299
>gi|183637194|gb|ACC64552.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Rhinolophus ferrumequinum]
Length = 385
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 97/183 (53%), Gaps = 23/183 (12%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 137
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 216 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARF 275
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ L +D E+ ++ I FK V + RS R+ AIAA+Q
Sbjct: 276 RQLRLDATEFACLKCIVTFKAVPTHSGSELRS--------------FRNAAAIAALQDEA 321
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ LN YIHT YP+QP RF K+ L+LP L+SI +EE+FF+ IG N I + + MY
Sbjct: 322 QLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIG-NVPITRLLSDMY 380
Query: 258 KNA 260
K++
Sbjct: 381 KSS 383
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 53
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 216 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARF 275
Query: 54 KVLNIDPYEYDYIRAITLFKTAFT 77
+ L +D E+ ++ I FK T
Sbjct: 276 RQLRLDATEFACLKCIVTFKAVPT 299
>gi|4507537|ref|NP_003260.1| nuclear receptor subfamily 2 group E member 1 [Homo sapiens]
gi|281183082|ref|NP_001162457.1| nuclear receptor subfamily 2 group E member 1 [Papio anubis]
gi|388490051|ref|NP_001252896.1| nuclear receptor subfamily 2 group E member 1 [Macaca mulatta]
gi|114608752|ref|XP_527467.2| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Pan
troglodytes]
gi|332259804|ref|XP_003278973.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Nomascus
leucogenys]
gi|344264555|ref|XP_003404357.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Loxodonta
africana]
gi|403289711|ref|XP_003935987.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Saimiri
boliviensis boliviensis]
gi|426354159|ref|XP_004044535.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Gorilla
gorilla gorilla]
gi|426354161|ref|XP_004044536.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Gorilla gorilla gorilla]
gi|9910804|sp|Q9Y466.1|NR2E1_HUMAN RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll; Short=hTll
gi|11141399|gb|AAG31945.1|AF220532_1 orphan nuclear receptor [Homo sapiens]
gi|15705907|gb|AAL05871.1|AF411525_1 nuclear receptor subfamily 2 group E member 1 [Homo sapiens]
gi|2292902|emb|CAA73725.1| Tailless protein [Homo sapiens]
gi|20380429|gb|AAH28031.1| Nuclear receptor subfamily 2, group E, member 1 [Homo sapiens]
gi|61358419|gb|AAX41565.1| nuclear receptor subfamily 2 group E member 1 [synthetic construct]
gi|119568770|gb|EAW48385.1| nuclear receptor subfamily 2, group E, member 1, isoform CRA_a
[Homo sapiens]
gi|164449656|gb|ABY56294.1| nuclear receptor subfamily 2, group E, member 1 (predicted) [Papio
anubis]
gi|166183798|gb|ABY84160.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Callithrix jacchus]
gi|216409726|dbj|BAH02300.1| tailes-related receptor [Homo sapiens]
gi|261857884|dbj|BAI45464.1| nuclear receptor subfamily 2, group E, member 1 [synthetic
construct]
gi|325495503|gb|ADZ17357.1| nuclear receptor TLX [Homo sapiens]
gi|355562170|gb|EHH18802.1| hypothetical protein EGK_15469 [Macaca mulatta]
gi|380816050|gb|AFE79899.1| nuclear receptor subfamily 2 group E member 1 [Macaca mulatta]
gi|380816052|gb|AFE79900.1| nuclear receptor subfamily 2 group E member 1 [Macaca mulatta]
Length = 385
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 97/183 (53%), Gaps = 23/183 (12%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 137
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 216 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARF 275
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ L +D E+ ++ I FK V + RS R+ AIAA+Q
Sbjct: 276 RQLRLDATEFACLKCIVTFKAVPTHSGSELRS--------------FRNAAAIAALQDEA 321
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ LN YIHT YP+QP RF K+ L+LP L+SI +EE+FF+ IG N I + + MY
Sbjct: 322 QLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIG-NVPITRLLSDMY 380
Query: 258 KNA 260
K++
Sbjct: 381 KSS 383
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 53
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 216 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARF 275
Query: 54 KVLNIDPYEYDYIRAITLFKTAFT 77
+ L +D E+ ++ I FK T
Sbjct: 276 RQLRLDATEFACLKCIVTFKAVPT 299
>gi|45384018|ref|NP_990501.1| nuclear receptor subfamily 2 group E member 1 [Gallus gallus]
gi|6094488|sp|Q91379.1|NR2E1_CHICK RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll
gi|619338|gb|AAB31467.1| nuclear receptor TLX [Gallus gallus]
gi|745066|prf||2015392A nuclear receptor Tlx
Length = 385
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 97/183 (53%), Gaps = 23/183 (12%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 137
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 216 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARF 275
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ L +D E+ ++ I FK V + RS R+ AIAA+Q
Sbjct: 276 RQLRLDATEFACLKCIVTFKAVPTHSGSELRS--------------FRNAAAIAALQDEA 321
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ LN YIHT YP+QP RF K+ L+LP L+SI +EE+FF+ IG N I + + MY
Sbjct: 322 QLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIG-NVPITRLLSDMY 380
Query: 258 KNA 260
K++
Sbjct: 381 KSS 383
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 53
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 216 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARF 275
Query: 54 KVLNIDPYEYDYIRAITLFKTAFT 77
+ L +D E+ ++ I FK T
Sbjct: 276 RQLRLDATEFACLKCIVTFKAVPT 299
>gi|300676833|gb|ADK26709.1| nuclear receptor subfamily 2, group E, member 1 [Zonotrichia
albicollis]
gi|300676928|gb|ADK26800.1| nuclear receptor subfamily 2, group E, member 1 [Zonotrichia
albicollis]
Length = 385
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 97/183 (53%), Gaps = 23/183 (12%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 137
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 216 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARF 275
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ L +D E+ ++ I FK V + RS R+ AIAA+Q
Sbjct: 276 RQLRLDATEFACLKCIVTFKAVPTHSGSELRS--------------FRNAAAIAALQDEA 321
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ LN YIHT YP+QP RF K+ L+LP L+SI +EE+FF+ IG N I + + MY
Sbjct: 322 QLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIG-NVPITRLLSDMY 380
Query: 258 KNA 260
K++
Sbjct: 381 KSS 383
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 53
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 216 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARF 275
Query: 54 KVLNIDPYEYDYIRAITLFKTAFT 77
+ L +D E+ ++ I FK T
Sbjct: 276 RQLRLDATEFACLKCIVTFKAVPT 299
>gi|47077588|dbj|BAD18677.1| unnamed protein product [Homo sapiens]
gi|119568771|gb|EAW48386.1| nuclear receptor subfamily 2, group E, member 1, isoform CRA_b
[Homo sapiens]
Length = 422
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 97/183 (53%), Gaps = 23/183 (12%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 137
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 253 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARF 312
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ L +D E+ ++ I FK V + RS R+ AIAA+Q
Sbjct: 313 RQLRLDATEFACLKCIVTFKAVPTHSGSELRS--------------FRNAAAIAALQDEA 358
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ LN YIHT YP+QP RF K+ L+LP L+SI +EE+FF+ IG N I + + MY
Sbjct: 359 QLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIG-NVPITRLLSDMY 417
Query: 258 KNA 260
K++
Sbjct: 418 KSS 420
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 53
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 253 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARF 312
Query: 54 KVLNIDPYEYDYIRAITLFKTAFT 77
+ L +D E+ ++ I FK T
Sbjct: 313 RQLRLDATEFACLKCIVTFKAVPT 336
>gi|431838686|gb|ELK00616.1| Nuclear receptor subfamily 2 group E member 1 [Pteropus alecto]
Length = 408
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 97/183 (53%), Gaps = 23/183 (12%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 137
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 239 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARF 298
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ L +D E+ ++ I FK V + RS R+ AIAA+Q
Sbjct: 299 RQLRLDATEFACLKCIVTFKAVPTHSGSELRS--------------FRNAAAIAALQDEA 344
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ LN YIHT YP+QP RF K+ L+LP L+SI +EE+FF+ IG N I + + MY
Sbjct: 345 QLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIG-NVPITRLLSDMY 403
Query: 258 KNA 260
K++
Sbjct: 404 KSS 406
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 53
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 239 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARF 298
Query: 54 KVLNIDPYEYDYIRAITLFKTAFT 77
+ L +D E+ ++ I FK T
Sbjct: 299 RQLRLDATEFACLKCIVTFKAVPT 322
>gi|60828539|gb|AAX36846.1| nuclear receptor subfamily 2 group E member 1 [synthetic construct]
Length = 386
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 97/183 (53%), Gaps = 23/183 (12%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 137
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 216 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARF 275
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ L +D E+ ++ I FK V + RS R+ AIAA+Q
Sbjct: 276 RQLRLDATEFACLKCIVTFKAVPTHSGSELRS--------------FRNAAAIAALQDEA 321
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ LN YIHT YP+QP RF K+ L+LP L+SI +EE+FF+ IG N I + + MY
Sbjct: 322 QLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIG-NVPITRLLSDMY 380
Query: 258 KNA 260
K++
Sbjct: 381 KSS 383
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 53
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 216 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARF 275
Query: 54 KVLNIDPYEYDYIRAITLFKTAFT 77
+ L +D E+ ++ I FK T
Sbjct: 276 RQLRLDATEFACLKCIVTFKAVPT 299
>gi|301763932|ref|XP_002917384.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
E member 1-like [Ailuropoda melanoleuca]
Length = 380
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 97/183 (53%), Gaps = 23/183 (12%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 137
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 211 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARF 270
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ L +D E+ ++ I FK V + RS R+ AIAA+Q
Sbjct: 271 RQLRLDATEFACLKCIVTFKAVPTHSGSELRS--------------FRNAAAIAALQDEA 316
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ LN YIHT YP+QP RF K+ L+LP L+SI +EE+FF+ IG N I + + MY
Sbjct: 317 QLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIG-NVPITRLLSDMY 375
Query: 258 KNA 260
K++
Sbjct: 376 KSS 378
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 53
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 211 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARF 270
Query: 54 KVLNIDPYEYDYIRAITLFKTAFT 77
+ L +D E+ ++ I FK T
Sbjct: 271 RQLRLDATEFACLKCIVTFKAVPT 294
>gi|163954969|ref|NP_001106668.1| nuclear receptor subfamily 2, group E, member 1 [Rattus norvegicus]
gi|163658507|gb|ABY28383.1| tailless-like protein [Rattus norvegicus]
Length = 385
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 97/183 (53%), Gaps = 23/183 (12%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 137
+LL ++WRELF+LG+AQ+ +D L V S + D ++ E+ Q V+ F
Sbjct: 216 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNSDNTDSQKLNKIISEIQALQEVVARF 275
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ L +D E+ ++ FK V + RS R+ AIAA+Q
Sbjct: 276 RQLRLDATEFACLKCTVTFKAVPTHSGSELRS--------------FRNAAAIAALQDEA 321
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ LN YIHT YP+QP RF K+ L+LP L+SI +EE+FF+ IG N I + + MY
Sbjct: 322 QLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIG-NVPITRLLSDMY 380
Query: 258 KNA 260
K++
Sbjct: 381 KSS 383
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 53
+LL ++WRELF+LG+AQ+ +D L V S + D ++ E+ Q V+ F
Sbjct: 216 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNSDNTDSQKLNKIISEIQALQEVVARF 275
Query: 54 KVLNIDPYEYDYIRAITLFKTAFT 77
+ L +D E+ ++ FK T
Sbjct: 276 RQLRLDATEFACLKCTVTFKAVPT 299
>gi|327261729|ref|XP_003215681.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Anolis carolinensis]
Length = 382
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 97/183 (53%), Gaps = 23/183 (12%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 137
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 213 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARF 272
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ L +D E+ ++ I FK V + RS R+ AIAA+Q
Sbjct: 273 RQLRLDATEFACLKCIVTFKAVPTHSGSELRS--------------FRNAAAIAALQDEA 318
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ LN YIHT YP+QP RF K+ L+LP L+SI +EE+FF+ IG N I + + MY
Sbjct: 319 QLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIG-NVPITRLLSDMY 377
Query: 258 KNA 260
K++
Sbjct: 378 KSS 380
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 53
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 213 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARF 272
Query: 54 KVLNIDPYEYDYIRAITLFKTAFT 77
+ L +D E+ ++ I FK T
Sbjct: 273 RQLRLDATEFACLKCIVTFKAVPT 296
>gi|410959792|ref|XP_003986483.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Felis
catus]
Length = 422
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 97/183 (53%), Gaps = 23/183 (12%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 137
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 253 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARF 312
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ L +D E+ ++ I FK V + RS R+ AIAA+Q
Sbjct: 313 RQLRLDATEFACLKCIVTFKAVPTHSGSELRS--------------FRNAAAIAALQDEA 358
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ LN YIHT YP+QP RF K+ L+LP L+SI +EE+FF+ IG N I + + MY
Sbjct: 359 QLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIG-NVPITRLLSDMY 417
Query: 258 KNA 260
K++
Sbjct: 418 KSS 420
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 53
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 253 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARF 312
Query: 54 KVLNIDPYEYDYIRAITLFKTAFT 77
+ L +D E+ ++ I FK T
Sbjct: 313 RQLRLDATEFACLKCIVTFKAVPT 336
>gi|296198939|ref|XP_002746955.1| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Callithrix jacchus]
Length = 386
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 99/183 (54%), Gaps = 22/183 (12%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 137
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 216 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARF 275
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ L +D E+ ++ I F+ VI + GSE R+ AIAA+Q
Sbjct: 276 RQLRLDATEFACLKCIVTFQAVIP-----------THSGSEL--RSFRNAAAIAALQDEA 322
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ LN YIHT YP+QP RF K+ L+LP L+SI +EE+FF+ IG N I + + MY
Sbjct: 323 QLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIG-NVPITRLLSDMY 381
Query: 258 KNA 260
K++
Sbjct: 382 KSS 384
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 53
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 216 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARF 275
Query: 54 KVLNIDPYEYDYIRAITLFK 73
+ L +D E+ ++ I F+
Sbjct: 276 RQLRLDATEFACLKCIVTFQ 295
>gi|440904093|gb|ELR54654.1| Nuclear receptor subfamily 2 group E member 1, partial [Bos
grunniens mutus]
Length = 396
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 97/183 (53%), Gaps = 23/183 (12%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 137
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 227 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARF 286
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ L +D E+ ++ I FK V + RS R+ AIAA+Q
Sbjct: 287 RQLRLDATEFACLKCIVTFKAVPTHSGSELRS--------------FRNAAAIAALQDEA 332
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ LN YIHT YP+QP RF K+ L+LP L+SI +EE+FF+ IG N I + + MY
Sbjct: 333 QLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIG-NVPITRLLSDMY 391
Query: 258 KNA 260
K++
Sbjct: 392 KSS 394
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 53
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 227 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARF 286
Query: 54 KVLNIDPYEYDYIRAITLFKTAFT 77
+ L +D E+ ++ I FK T
Sbjct: 287 RQLRLDATEFACLKCIVTFKAVPT 310
>gi|74187239|dbj|BAE22615.1| unnamed protein product [Mus musculus]
Length = 173
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 99/183 (54%), Gaps = 23/183 (12%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 137
+LL ++WRELF+LG+AQ+ +D L V + + D ++ E+ Q V+ F
Sbjct: 4 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNTDNTDSQKLNKIISEIQALQEVVARF 63
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ L +D E+ ++ I FK V + GSE R+ AIAA+Q
Sbjct: 64 RQLRLDATEFACLKCIVTFKAV------------PTHSGSEL--RSFRNAAAIAALQDEA 109
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ LN YIHT YP+QP RF K+ L+LP L+SI +EE+FF+ IG N I + + MY
Sbjct: 110 QLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIG-NVPITRLLSDMY 168
Query: 258 KNA 260
K++
Sbjct: 169 KSS 171
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 53
+LL ++WRELF+LG+AQ+ +D L V + + D ++ E+ Q V+ F
Sbjct: 4 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNTDNTDSQKLNKIISEIQALQEVVARF 63
Query: 54 KVLNIDPYEYDYIRAITLFKTAFT 77
+ L +D E+ ++ I FK T
Sbjct: 64 RQLRLDATEFACLKCIVTFKAVPT 87
>gi|147904762|ref|NP_001079280.1| nuclear receptor subfamily 2 group E member 1 [Xenopus laevis]
gi|6094490|sp|P70052.1|NR2E1_XENLA RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll; Short=xTLL
gi|1527203|gb|AAB07732.1| orphan nuclear receptor XTLL [Xenopus laevis]
Length = 386
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 103/183 (56%), Gaps = 22/183 (12%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELV-------ESCKSRHVD-IEEEVIRFQSVLNEF 137
+LL ++WRELF+LG+AQ+ +D L+ E+ +S ++ I E+ Q V++ F
Sbjct: 216 MLLEDAWRELFVLGIAQWAIPVDASTLLAVSGMNNENTESPKLNKIISEIQALQDVVSRF 275
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ L +D E+ ++ I FK + S+ GSE R+ AI+A+Q
Sbjct: 276 RQLRLDATEFACLKCIVTFKAGV-----------STHSGSELRN--FRNAAAISALQDEA 322
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ LN YIHT YP+QP RF K+ L+LP L+SI +EE+FF+ IG N I + + MY
Sbjct: 323 QLTLNSYIHTRYPTQPCRFGKLLLLLPALRSINPSTIEEVFFKKTIG-NVPITRVLSDMY 381
Query: 258 KNA 260
K++
Sbjct: 382 KSS 384
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 8/85 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELV-------ESCKSRHVD-IEEEVIRFQSVLNEF 53
+LL ++WRELF+LG+AQ+ +D L+ E+ +S ++ I E+ Q V++ F
Sbjct: 216 MLLEDAWRELFVLGIAQWAIPVDASTLLAVSGMNNENTESPKLNKIISEIQALQDVVSRF 275
Query: 54 KVLNIDPYEYDYIRAITLFKTAFTS 78
+ L +D E+ ++ I FK ++
Sbjct: 276 RQLRLDATEFACLKCIVTFKAGVST 300
>gi|348524801|ref|XP_003449911.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
isoform 2 [Oreochromis niloticus]
Length = 385
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 101/183 (55%), Gaps = 23/183 (12%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELV-------ESCKSRHVD-IEEEVIRFQSVLNEF 137
+LL ++WRELF+LG+AQ+ +D L+ E+ +S+ ++ I E+ Q V+ F
Sbjct: 216 ILLEDAWRELFVLGIAQWAIPVDSTTLLAVSGMNTENTESQRMNKIMSEIQALQEVVTRF 275
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ + +D E+ ++ I FK V + RS R+ AIAA+Q
Sbjct: 276 RQMRLDATEFACLKCIVTFKAVPTHGSTELRS--------------FRNASAIAALQDEA 321
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ LN YIHT YP+QP RF K+ L+LP L+S+ +EE+FF+ IG N I + + MY
Sbjct: 322 QLTLNSYIHTRYPTQPCRFGKLLLLLPALRSVSPSTIEEVFFKKTIG-NVPITRLLSDMY 380
Query: 258 KNA 260
K++
Sbjct: 381 KSS 383
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 8/84 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELV-------ESCKSRHVD-IEEEVIRFQSVLNEF 53
+LL ++WRELF+LG+AQ+ +D L+ E+ +S+ ++ I E+ Q V+ F
Sbjct: 216 ILLEDAWRELFVLGIAQWAIPVDSTTLLAVSGMNTENTESQRMNKIMSEIQALQEVVTRF 275
Query: 54 KVLNIDPYEYDYIRAITLFKTAFT 77
+ + +D E+ ++ I FK T
Sbjct: 276 RQMRLDATEFACLKCIVTFKAVPT 299
>gi|348524799|ref|XP_003449910.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
isoform 1 [Oreochromis niloticus]
Length = 396
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 101/183 (55%), Gaps = 23/183 (12%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELV-------ESCKSRHVD-IEEEVIRFQSVLNEF 137
+LL ++WRELF+LG+AQ+ +D L+ E+ +S+ ++ I E+ Q V+ F
Sbjct: 227 ILLEDAWRELFVLGIAQWAIPVDSTTLLAVSGMNTENTESQRMNKIMSEIQALQEVVTRF 286
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ + +D E+ ++ I FK V + RS R+ AIAA+Q
Sbjct: 287 RQMRLDATEFACLKCIVTFKAVPTHGSTELRS--------------FRNASAIAALQDEA 332
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ LN YIHT YP+QP RF K+ L+LP L+S+ +EE+FF+ IG N I + + MY
Sbjct: 333 QLTLNSYIHTRYPTQPCRFGKLLLLLPALRSVSPSTIEEVFFKKTIG-NVPITRLLSDMY 391
Query: 258 KNA 260
K++
Sbjct: 392 KSS 394
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 8/84 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLD-------LGELVESCKSRHVD-IEEEVIRFQSVLNEF 53
+LL ++WRELF+LG+AQ+ +D G E+ +S+ ++ I E+ Q V+ F
Sbjct: 227 ILLEDAWRELFVLGIAQWAIPVDSTTLLAVSGMNTENTESQRMNKIMSEIQALQEVVTRF 286
Query: 54 KVLNIDPYEYDYIRAITLFKTAFT 77
+ + +D E+ ++ I FK T
Sbjct: 287 RQMRLDATEFACLKCIVTFKAVPT 310
>gi|410916893|ref|XP_003971921.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
isoform 2 [Takifugu rubripes]
gi|21538834|gb|AAM61763.1|AF461063_2 nuclear receptor 2E1 [Takifugu rubripes]
Length = 396
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 98/183 (53%), Gaps = 23/183 (12%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELV-------ESCKS-RHVDIEEEVIRFQSVLNEF 137
+LL ++WRELF+LG+AQ+ +D L+ E+ +S R I E+ Q V+ F
Sbjct: 227 ILLEDAWRELFVLGIAQWAIPVDPTTLLAVSGMNTENTESQRMTKIMSEIQALQEVVTRF 286
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ + +D E+ ++ I FK V + RS R+ AIAA+Q
Sbjct: 287 RQMRLDATEFACLKCIVTFKAVPTQGNAEIRS--------------FRNASAIAALQDEA 332
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ LN YIHT YP+QP RF K+ L+LP L SI +EE+FF+ IG N I + + MY
Sbjct: 333 QLTLNSYIHTRYPTQPCRFGKLLLLLPSLHSISPSTIEEVFFKKTIG-NVPITRLLSDMY 391
Query: 258 KNA 260
K++
Sbjct: 392 KSS 394
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELV-------ESCKS-RHVDIEEEVIRFQSVLNEF 53
+LL ++WRELF+LG+AQ+ +D L+ E+ +S R I E+ Q V+ F
Sbjct: 227 ILLEDAWRELFVLGIAQWAIPVDPTTLLAVSGMNTENTESQRMTKIMSEIQALQEVVTRF 286
Query: 54 KVLNIDPYEYDYIRAITLFKTAFT 77
+ + +D E+ ++ I FK T
Sbjct: 287 RQMRLDATEFACLKCIVTFKAVPT 310
>gi|410916891|ref|XP_003971920.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
isoform 1 [Takifugu rubripes]
Length = 385
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 98/183 (53%), Gaps = 23/183 (12%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELV-------ESCKS-RHVDIEEEVIRFQSVLNEF 137
+LL ++WRELF+LG+AQ+ +D L+ E+ +S R I E+ Q V+ F
Sbjct: 216 ILLEDAWRELFVLGIAQWAIPVDPTTLLAVSGMNTENTESQRMTKIMSEIQALQEVVTRF 275
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ + +D E+ ++ I FK V + RS R+ AIAA+Q
Sbjct: 276 RQMRLDATEFACLKCIVTFKAVPTQGNAEIRS--------------FRNASAIAALQDEA 321
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ LN YIHT YP+QP RF K+ L+LP L SI +EE+FF+ IG N I + + MY
Sbjct: 322 QLTLNSYIHTRYPTQPCRFGKLLLLLPSLHSISPSTIEEVFFKKTIG-NVPITRLLSDMY 380
Query: 258 KNA 260
K++
Sbjct: 381 KSS 383
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELV-------ESCKS-RHVDIEEEVIRFQSVLNEF 53
+LL ++WRELF+LG+AQ+ +D L+ E+ +S R I E+ Q V+ F
Sbjct: 216 ILLEDAWRELFVLGIAQWAIPVDPTTLLAVSGMNTENTESQRMTKIMSEIQALQEVVTRF 275
Query: 54 KVLNIDPYEYDYIRAITLFKTAFT 77
+ + +D E+ ++ I FK T
Sbjct: 276 RQMRLDATEFACLKCIVTFKAVPT 299
>gi|57525699|ref|NP_001003608.1| nuclear receptor subfamily 2 group E member 1 [Danio rerio]
gi|50418146|gb|AAH77146.1| Nuclear receptor subfamily 2, group E, member 1 [Danio rerio]
gi|116517486|gb|ABJ99095.1| nuclear receptor subfamily 2 group E member 1 [Danio rerio]
Length = 396
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 100/183 (54%), Gaps = 23/183 (12%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELV-------ESCKSRHVD-IEEEVIRFQSVLNEF 137
+LL ++WRELF+LG+AQ+ +D L+ E+ S+ ++ I E+ Q V+ F
Sbjct: 227 ILLEDAWRELFVLGIAQWAIPVDSSTLLAVSGMNTENTDSQRLNKIISEIQALQEVVTRF 286
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ L +D E+ ++ I FK V + RS R+ AIAA+Q
Sbjct: 287 RQLRLDATEFACLKCIVTFKAVPTHSGSELRS--------------FRNASAIAALQDEA 332
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ LN YIHT YP+QP RF K+ L+LP L+S+ +EE+FF+ IG N I + + MY
Sbjct: 333 QLTLNSYIHTRYPTQPCRFGKLLLLLPALRSVGPSTIEEVFFKKTIG-NVPITRLLSDMY 391
Query: 258 KNA 260
K++
Sbjct: 392 KSS 394
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 8/84 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELV-------ESCKSRHVD-IEEEVIRFQSVLNEF 53
+LL ++WRELF+LG+AQ+ +D L+ E+ S+ ++ I E+ Q V+ F
Sbjct: 227 ILLEDAWRELFVLGIAQWAIPVDSSTLLAVSGMNTENTDSQRLNKIISEIQALQEVVTRF 286
Query: 54 KVLNIDPYEYDYIRAITLFKTAFT 77
+ L +D E+ ++ I FK T
Sbjct: 287 RQLRLDATEFACLKCIVTFKAVPT 310
>gi|297678833|ref|XP_002817264.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Pongo
abelii]
Length = 385
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 96/183 (52%), Gaps = 23/183 (12%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 137
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 216 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARF 275
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ L +D E+ ++ I FK V + RS R+ AIAA+Q
Sbjct: 276 RQLRLDATEFACLKCIVTFKAVPTHSGSELRS--------------FRNAAAIAALQDEA 321
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ LN YIH YP+QP RF K+ L+LP L+SI +EE+FF+ IG N I + + MY
Sbjct: 322 QLTLNSYIHNRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIG-NVPITRLLSDMY 380
Query: 258 KNA 260
K++
Sbjct: 381 KSS 383
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 53
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 216 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARF 275
Query: 54 KVLNIDPYEYDYIRAITLFKTAFT 77
+ L +D E+ ++ I FK T
Sbjct: 276 RQLRLDATEFACLKCIVTFKAVPT 299
>gi|405978561|gb|EKC42941.1| Nuclear receptor subfamily 2 group E member 1 [Crassostrea gigas]
Length = 388
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 103/184 (55%), Gaps = 24/184 (13%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVES---------CKSRHVDIEEEVIRFQSVLNE 136
+L+ ESWR+LFIL LAQ+ + L+ + R E+ V+++
Sbjct: 218 VLIEESWRDLFILSLAQFRLPIQPHVLITASGVTSDSKMTSERMSACMLEIRALHDVIDK 277
Query: 137 FKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGH 196
FK++N+DP EY ++AI +FKT + + V + ++ LRD A+A +Q
Sbjct: 278 FKLINVDPTEYTCLKAIVIFKTALRNPVHEMKT--------------LRDSHAVALLQDQ 323
Query: 197 TQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q+ L+KYI + YPSQP RF K+ L+LP L+++ S V+E++FF+ IGH I K I M
Sbjct: 324 AQVTLSKYIESTYPSQPFRFGKLLLLLPLLQTVSSKVIEDIFFKRTIGH-VPIDKLIVDM 382
Query: 257 YKNA 260
+K+
Sbjct: 383 FKSG 386
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVES---------CKSRHVDIEEEVIRFQSVLNE 52
+L+ ESWR+LFIL LAQ+ + L+ + R E+ V+++
Sbjct: 218 VLIEESWRDLFILSLAQFRLPIQPHVLITASGVTSDSKMTSERMSACMLEIRALHDVIDK 277
Query: 53 FKVLNIDPYEYDYIRAITLFKTAF 76
FK++N+DP EY ++AI +FKTA
Sbjct: 278 FKLINVDPTEYTCLKAIVIFKTAL 301
>gi|301615499|ref|XP_002937209.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
E member 1-like [Xenopus (Silurana) tropicalis]
Length = 405
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 102/183 (55%), Gaps = 22/183 (12%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELV-------ESCKSRHVD-IEEEVIRFQSVLNEF 137
+LL ++WRELF+LG+AQ+ +D L+ ++ +S+ ++ I E+ Q V++ F
Sbjct: 235 MLLEDAWRELFVLGIAQWAIPVDASTLLAVSGMNSDNTESQKLNKIISEIQALQEVVSRF 294
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ L +D E+ ++ I FK + GSE R+ AIAA+Q
Sbjct: 295 RQLRLDATEFACLKCIVTFKAGVPPH-----------SGSELRS--FRNAAAIAALQDEA 341
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ LN YIHT YP+QP RF K+ L+LP L+SI +EE+FF+ IG N I + + MY
Sbjct: 342 QLTLNSYIHTRYPTQPCRFGKLLLLLPALRSINPSTIEEVFFKKTIG-NVPITRLLSDMY 400
Query: 258 KNA 260
K++
Sbjct: 401 KSS 403
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 8/82 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELV-------ESCKSRHVD-IEEEVIRFQSVLNEF 53
+LL ++WRELF+LG+AQ+ +D L+ ++ +S+ ++ I E+ Q V++ F
Sbjct: 235 MLLEDAWRELFVLGIAQWAIPVDASTLLAVSGMNSDNTESQKLNKIISEIQALQEVVSRF 294
Query: 54 KVLNIDPYEYDYIRAITLFKTA 75
+ L +D E+ ++ I FK
Sbjct: 295 RQLRLDATEFACLKCIVTFKAG 316
>gi|194905186|ref|XP_001981146.1| GG11781 [Drosophila erecta]
gi|190655784|gb|EDV53016.1| GG11781 [Drosophila erecta]
Length = 438
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 98/179 (54%), Gaps = 15/179 (8%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD------IEEEVIRFQSVLNEFKV 139
LLL ESW+E FIL +AQYL ++ +L+ +S + + + EV FQ VLN+
Sbjct: 263 LLLEESWKEFFILAMAQYLMPMNFAQLLFVYESENANREIMGMVTREVHAFQEVLNQLCH 322
Query: 140 LNIDPYEYDYIRAITLFK-TVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
LNID EY+ +RAI+LF+ +++ N S+S+ G L + +AA+ +
Sbjct: 323 LNIDSTEYECLRAISLFRNSILTGSGSPNSSASAESKG-------LLESGKVAAMHNDAR 375
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
L+ YI +P+QP RF + ++ + + S +EELFFR IG + TI + I MY
Sbjct: 376 SALHNYIQRTHPAQPMRFQTLLGVVQMMHKVSSFTIEELFFRKTIG-DITIVRLISDMY 433
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 6/80 (7%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD------IEEEVIRFQSVLNEFKV 55
LLL ESW+E FIL +AQYL ++ +L+ +S + + + EV FQ VLN+
Sbjct: 263 LLLEESWKEFFILAMAQYLMPMNFAQLLFVYESENANREIMGMVTREVHAFQEVLNQLCH 322
Query: 56 LNIDPYEYDYIRAITLFKTA 75
LNID EY+ +RAI+LF+ +
Sbjct: 323 LNIDSTEYECLRAISLFRNS 342
>gi|326916109|ref|XP_003204353.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Meleagris gallopavo]
Length = 339
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 94/179 (52%), Gaps = 23/179 (12%)
Query: 90 ESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEFKVLN 141
++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F+ L
Sbjct: 174 DAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARFRQLR 233
Query: 142 IDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFL 201
+D E+ ++ I FK V + RS R+ AIAA+Q Q+ L
Sbjct: 234 LDATEFACLKCIVTFKAVPTHSGSELRS--------------FRNAAAIAALQDEAQLTL 279
Query: 202 NKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 260
N YIHT YP+QP RF K+ L+LP L+SI +EE+FF+ IG N I + + MYK++
Sbjct: 280 NSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIG-NVPITRLLSDMYKSS 337
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 6 ESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEFKVLN 57
++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F+ L
Sbjct: 174 DAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARFRQLR 233
Query: 58 IDPYEYDYIRAITLFKTAFT 77
+D E+ ++ I FK T
Sbjct: 234 LDATEFACLKCIVTFKAVPT 253
>gi|55140659|gb|AAV41874.1| tailless [Musca domestica]
Length = 442
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 103/181 (56%), Gaps = 18/181 (9%)
Query: 90 ESWRELFILGLAQYLPSLDLGELVESCKSRHVD------IEEEVIRFQSVLNEFKVLNID 143
+SW+E FIL +AQYL ++ +L+ +S + + + EV FQ VLN+ LNID
Sbjct: 262 DSWKEFFILAMAQYLMPMNFTQLLFVYESENPNRDVTGLVTREVHAFQDVLNQLCHLNID 321
Query: 144 PYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCL----RDVI---AIAAIQGH 196
+EY+ IRA+TLF+ D++ + SS S+ +GS P S + R +I IAA+
Sbjct: 322 SHEYELIRALTLFRRPGSDDLAN--SSLSTSNGS--PNSSISAESRGLIESTKIAALHDE 377
Query: 197 TQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
++ L YI ++P QP RF I +L ++ + S +EELFFR IG + TI + I M
Sbjct: 378 SRNALIGYIARLHPGQPMRFQSIMSVLTQMHKVSSFAIEELFFRKTIG-DITIVRLIGDM 436
Query: 257 Y 257
Y
Sbjct: 437 Y 437
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 6/74 (8%)
Query: 6 ESWRELFILGLAQYLPSLDLGELVESCKSRHVD------IEEEVIRFQSVLNEFKVLNID 59
+SW+E FIL +AQYL ++ +L+ +S + + + EV FQ VLN+ LNID
Sbjct: 262 DSWKEFFILAMAQYLMPMNFTQLLFVYESENPNRDVTGLVTREVHAFQDVLNQLCHLNID 321
Query: 60 PYEYDYIRAITLFK 73
+EY+ IRA+TLF+
Sbjct: 322 SHEYELIRALTLFR 335
>gi|157278483|ref|NP_001098343.1| nuclear receptor subfamily 2 group E member 1 [Oryzias latipes]
gi|9910805|sp|Q9YGL3.1|NR2E1_ORYLA RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll
gi|4468637|emb|CAB38085.1| tailless [Oryzias latipes]
Length = 396
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 101/183 (55%), Gaps = 23/183 (12%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELV-------ESCKSRHVD-IEEEVIRFQSVLNEF 137
+LL ++WRELF+LG+AQ+ +D L+ E+ +++ ++ I E+ Q V+ F
Sbjct: 227 ILLEDAWRELFVLGIAQWAIPVDSTTLLAVSGLNSENMEAQRMNKIMAEIQALQEVVTRF 286
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ + +D E+ ++ I FK V + R+ R+ AIAA+Q
Sbjct: 287 RQMRLDATEFACLKCIVTFKAVPTQGSAELRA--------------FRNASAIAALQDEA 332
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ LN YIHT YP+QP RF K+ L+LP L+S+ +EE+FF+ IG N I + + MY
Sbjct: 333 QLTLNSYIHTRYPTQPCRFGKLLLLLPALRSVSPSTIEEVFFKKNIG-NVPITRLLSDMY 391
Query: 258 KNA 260
K++
Sbjct: 392 KSS 394
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 8/84 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELV-------ESCKSRHVD-IEEEVIRFQSVLNEF 53
+LL ++WRELF+LG+AQ+ +D L+ E+ +++ ++ I E+ Q V+ F
Sbjct: 227 ILLEDAWRELFVLGIAQWAIPVDSTTLLAVSGLNSENMEAQRMNKIMAEIQALQEVVTRF 286
Query: 54 KVLNIDPYEYDYIRAITLFKTAFT 77
+ + +D E+ ++ I FK T
Sbjct: 287 RQMRLDATEFACLKCIVTFKAVPT 310
>gi|47224633|emb|CAG03617.1| unnamed protein product [Tetraodon nigroviridis]
Length = 393
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 100/185 (54%), Gaps = 12/185 (6%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELV-------ESCKS-RHVDIEEEVIRFQSVLNEF 137
+LL ++WRELF+LG+AQ+ +D L+ E+ +S R I E+ Q V+ F
Sbjct: 209 ILLEDAWRELFVLGIAQWAIPVDSTTLLAVSGMNTENTESQRMTKIVSEIQALQEVVTRF 268
Query: 138 KVLNIDPYEYDYIRAITLFKTVI--EDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQG 195
+ + +D E+ ++ I FK V N G+ S R+ AIAA+Q
Sbjct: 269 RQMRLDATEFACLKCIVTFKAGQYHRGSVLGNMCLWVPTQGNAEIRS-FRNASAIAALQD 327
Query: 196 HTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWH 255
Q+ LN YIHT YP+QP RF K+ L+LP L+S+ +EE+FF+ IG N I + +
Sbjct: 328 EAQLTLNSYIHTRYPTQPCRFGKLLLLLPSLRSVSPSTIEEVFFKKTIG-NVPITRLLSD 386
Query: 256 MYKNA 260
MYK++
Sbjct: 387 MYKSS 391
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 2 LLLAESWRELFILGLAQYLPSLD-------LGELVESCKS-RHVDIEEEVIRFQSVLNEF 53
+LL ++WRELF+LG+AQ+ +D G E+ +S R I E+ Q V+ F
Sbjct: 209 ILLEDAWRELFVLGIAQWAIPVDSTTLLAVSGMNTENTESQRMTKIVSEIQALQEVVTRF 268
Query: 54 KVLNIDPYEYDYIRAITLFKTAFTSRRELAGHLLL 88
+ + +D E+ ++ I FK R + G++ L
Sbjct: 269 RQMRLDATEFACLKCIVTFKAGQYHRGSVLGNMCL 303
>gi|17864126|ref|NP_524596.1| tailless [Drosophila melanogaster]
gi|135913|sp|P18102.1|TLL_DROME RecName: Full=Protein tailless; AltName: Full=Nuclear receptor
subfamily 2 group E member 2
gi|158604|gb|AAA28936.1| tailless (tll) protein [Drosophila melanogaster]
gi|2440022|gb|AAB71371.1| tailless protein [Drosophila melanogaster]
gi|7301986|gb|AAF57091.1| tailless [Drosophila melanogaster]
gi|66571248|gb|AAY51589.1| IP01133p [Drosophila melanogaster]
gi|220943320|gb|ACL84203.1| tll-PA [synthetic construct]
gi|220953302|gb|ACL89194.1| tll-PA [synthetic construct]
Length = 452
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 101/193 (52%), Gaps = 29/193 (15%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD------IEEEVIRFQSVLNEFKV 139
LLL ESW+E FIL +AQYL ++ +L+ +S + + + EV FQ VLN+
Sbjct: 263 LLLEESWKEFFILAMAQYLMPMNFAQLLFVYESENANREIMGMVTREVHAFQEVLNQLCH 322
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDD--------GSEHPESC-------L 184
LNID EY+ +RAI+LF+ K S+SS++D GS P S L
Sbjct: 323 LNIDSTEYECLRAISLFR-------KSPPSASSTEDLANSSILTGSGSPNSSASAESRGL 375
Query: 185 RDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
+ +AA+ + L+ YI +PSQP RF + ++ + + S +EELFFR IG
Sbjct: 376 LESGKVAAMHNDARSALHNYIQRTHPSQPMRFQTLLGVVQLMHKVSSFTIEELFFRKTIG 435
Query: 245 HNTTIKKTIWHMY 257
+ TI + I MY
Sbjct: 436 -DITIVRLISDMY 447
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 58/99 (58%), Gaps = 9/99 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD------IEEEVIRFQSVLNEFKV 55
LLL ESW+E FIL +AQYL ++ +L+ +S + + + EV FQ VLN+
Sbjct: 263 LLLEESWKEFFILAMAQYLMPMNFAQLLFVYESENANREIMGMVTREVHAFQEVLNQLCH 322
Query: 56 LNIDPYEYDYIRAITLFK---TAFTSRRELAGHLLLAES 91
LNID EY+ +RAI+LF+ + +S +LA +L S
Sbjct: 323 LNIDSTEYECLRAISLFRKSPPSASSTEDLANSSILTGS 361
>gi|195575179|ref|XP_002105557.1| GD21550 [Drosophila simulans]
gi|194201484|gb|EDX15060.1| GD21550 [Drosophila simulans]
Length = 452
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 101/193 (52%), Gaps = 29/193 (15%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD------IEEEVIRFQSVLNEFKV 139
LLL ESW+E FIL +AQYL ++ +L+ +S + + + EV FQ VLN+
Sbjct: 263 LLLEESWKEFFILAMAQYLMPMNFAQLLFVYESENANREIMGMVTREVHAFQEVLNQLCH 322
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDD--------GSEHPESC-------L 184
LNID EY+ +RAI+LF+ K S+SS++D GS P S L
Sbjct: 323 LNIDSTEYECLRAISLFR-------KSPPSASSTEDLANSSILTGSGSPNSSASAESRGL 375
Query: 185 RDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
+ +AA+ + L+ YI +PSQP RF + ++ + + S +EELFFR IG
Sbjct: 376 LESGKVAAMHNDARSALHNYIQRTHPSQPMRFQTLLGVVQLMHKVSSFTIEELFFRKTIG 435
Query: 245 HNTTIKKTIWHMY 257
+ TI + I MY
Sbjct: 436 -DITIVRLISDMY 447
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 58/99 (58%), Gaps = 9/99 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD------IEEEVIRFQSVLNEFKV 55
LLL ESW+E FIL +AQYL ++ +L+ +S + + + EV FQ VLN+
Sbjct: 263 LLLEESWKEFFILAMAQYLMPMNFAQLLFVYESENANREIMGMVTREVHAFQEVLNQLCH 322
Query: 56 LNIDPYEYDYIRAITLFK---TAFTSRRELAGHLLLAES 91
LNID EY+ +RAI+LF+ + +S +LA +L S
Sbjct: 323 LNIDSTEYECLRAISLFRKSPPSASSTEDLANSSILTGS 361
>gi|195505298|ref|XP_002099444.1| GE10907 [Drosophila yakuba]
gi|194185545|gb|EDW99156.1| GE10907 [Drosophila yakuba]
Length = 452
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 101/193 (52%), Gaps = 29/193 (15%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD------IEEEVIRFQSVLNEFKV 139
LLL ESW+E FIL +AQYL ++ +L+ +S + + + EV FQ VLN+
Sbjct: 263 LLLEESWKEFFILAMAQYLMPMNFAQLLFVYESENANREIMGMVTREVHAFQEVLNQLCH 322
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDD--------GSEHPESC-------L 184
LNID EY+ +RAI+LF+ K S+SS++D GS P S L
Sbjct: 323 LNIDSTEYECLRAISLFR-------KSPPSASSTEDLANSSILTGSGSPNSSASAESKGL 375
Query: 185 RDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
+ +AA+ + L+ YI +P+QP RF + ++ + + S +EELFFR IG
Sbjct: 376 LESGKVAAMHNDARSALHNYIQRTHPTQPMRFQTLLGVVQMMHKVSSFTIEELFFRKTIG 435
Query: 245 HNTTIKKTIWHMY 257
+ TI + I MY
Sbjct: 436 -DITIVRLISDMY 447
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 58/99 (58%), Gaps = 9/99 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD------IEEEVIRFQSVLNEFKV 55
LLL ESW+E FIL +AQYL ++ +L+ +S + + + EV FQ VLN+
Sbjct: 263 LLLEESWKEFFILAMAQYLMPMNFAQLLFVYESENANREIMGMVTREVHAFQEVLNQLCH 322
Query: 56 LNIDPYEYDYIRAITLFK---TAFTSRRELAGHLLLAES 91
LNID EY+ +RAI+LF+ + +S +LA +L S
Sbjct: 323 LNIDSTEYECLRAISLFRKSPPSASSTEDLANSSILTGS 361
>gi|195390875|ref|XP_002054093.1| tailless [Drosophila virilis]
gi|194152179|gb|EDW67613.1| tailless [Drosophila virilis]
Length = 450
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 100/186 (53%), Gaps = 15/186 (8%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD------IEEEVIRFQSVLNEFKV 139
LLL ESW+E FIL +AQYL ++ +L+ +S + + + EV FQ VLN+
Sbjct: 261 LLLEESWKEFFILAMAQYLMPMNFAQLLFVYESENANREIVTIVAREVHAFQDVLNQLCH 320
Query: 140 LNIDPYEYDYIRAITLF-KTVIEDEVKDNRSSSSSDDGSEHPESC-------LRDVIAIA 191
LNID EY+ +RAI+LF K+ ++ ++SS GS P S L + +A
Sbjct: 321 LNIDSTEYECLRAISLFRKSPPAASSTEDLANSSILTGSGSPNSSASAESRGLLESSKVA 380
Query: 192 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 251
A+ + L+ YI +P+QP RF + ++ + + S +EELFFR IG + TI +
Sbjct: 381 AMHNDARNALHNYISRTHPNQPLRFQTLLGVVTLMHKVSSFTIEELFFRKTIG-DITIVR 439
Query: 252 TIWHMY 257
I MY
Sbjct: 440 LISDMY 445
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 58/99 (58%), Gaps = 9/99 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD------IEEEVIRFQSVLNEFKV 55
LLL ESW+E FIL +AQYL ++ +L+ +S + + + EV FQ VLN+
Sbjct: 261 LLLEESWKEFFILAMAQYLMPMNFAQLLFVYESENANREIVTIVAREVHAFQDVLNQLCH 320
Query: 56 LNIDPYEYDYIRAITLFK---TAFTSRRELAGHLLLAES 91
LNID EY+ +RAI+LF+ A +S +LA +L S
Sbjct: 321 LNIDSTEYECLRAISLFRKSPPAASSTEDLANSSILTGS 359
>gi|194765110|ref|XP_001964670.1| GF22927 [Drosophila ananassae]
gi|190614942|gb|EDV30466.1| GF22927 [Drosophila ananassae]
Length = 456
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 100/186 (53%), Gaps = 15/186 (8%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD------IEEEVIRFQSVLNEFKV 139
+LL ESW+E FIL +AQYL ++ +L+ +S + + + EV FQ VLN+
Sbjct: 267 MLLEESWKEFFILAMAQYLMPMNFAQLLFVYESENANREIMGMVTREVHAFQDVLNQLCH 326
Query: 140 LNIDPYEYDYIRAITLF-KTVIEDEVKDNRSSSSSDDGSEHPESC-------LRDVIAIA 191
LNID EY+ +RAI+LF K+ ++ ++SS GS P S L + +A
Sbjct: 327 LNIDSTEYECLRAISLFRKSPPAASSTEDLANSSILTGSGSPNSSASAESKGLLESGKVA 386
Query: 192 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 251
A+ + L+ YI +P+QP RF + ++ + + S +EELFFR IG + TI +
Sbjct: 387 AMHNDARSALHNYIQRTHPAQPLRFQTLLGVVQLMHKVSSFTIEELFFRKTIG-DITIVR 445
Query: 252 TIWHMY 257
I MY
Sbjct: 446 LISDMY 451
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 58/99 (58%), Gaps = 9/99 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD------IEEEVIRFQSVLNEFKV 55
+LL ESW+E FIL +AQYL ++ +L+ +S + + + EV FQ VLN+
Sbjct: 267 MLLEESWKEFFILAMAQYLMPMNFAQLLFVYESENANREIMGMVTREVHAFQDVLNQLCH 326
Query: 56 LNIDPYEYDYIRAITLFK---TAFTSRRELAGHLLLAES 91
LNID EY+ +RAI+LF+ A +S +LA +L S
Sbjct: 327 LNIDSTEYECLRAISLFRKSPPAASSTEDLANSSILTGS 365
>gi|195452812|ref|XP_002073511.1| GK14159 [Drosophila willistoni]
gi|194169596|gb|EDW84497.1| GK14159 [Drosophila willistoni]
Length = 457
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 100/186 (53%), Gaps = 15/186 (8%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD------IEEEVIRFQSVLNEFKV 139
+LL ESW+E FIL +AQYL ++ +L+ +S + + + EV FQ VLN+
Sbjct: 268 MLLEESWKEFFILAMAQYLMPMNFSQLLFVYESENSNREIVGIVAREVHAFQDVLNQLCH 327
Query: 140 LNIDPYEYDYIRAITLF-KTVIEDEVKDNRSSSSSDDGSEHPESC-------LRDVIAIA 191
NID EY+ +RAI+LF K+ ++ ++SS GS P S L + +A
Sbjct: 328 FNIDSTEYECLRAISLFRKSPPAASSTEDLANSSILTGSGSPNSSASAESRGLLESSKVA 387
Query: 192 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 251
A+ + L+ YI +P+QP RF + ++ ++ + S +EELFFR IG + TI +
Sbjct: 388 AMHNDARNALHNYISRTHPNQPLRFQTLLGVVSQMHKVSSFTIEELFFRKTIG-DITIVR 446
Query: 252 TIWHMY 257
I MY
Sbjct: 447 LISDMY 452
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 57/99 (57%), Gaps = 9/99 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD------IEEEVIRFQSVLNEFKV 55
+LL ESW+E FIL +AQYL ++ +L+ +S + + + EV FQ VLN+
Sbjct: 268 MLLEESWKEFFILAMAQYLMPMNFSQLLFVYESENSNREIVGIVAREVHAFQDVLNQLCH 327
Query: 56 LNIDPYEYDYIRAITLFK---TAFTSRRELAGHLLLAES 91
NID EY+ +RAI+LF+ A +S +LA +L S
Sbjct: 328 FNIDSTEYECLRAISLFRKSPPAASSTEDLANSSILTGS 366
>gi|195113207|ref|XP_002001159.1| GI22125 [Drosophila mojavensis]
gi|193917753|gb|EDW16620.1| GI22125 [Drosophila mojavensis]
Length = 450
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 100/186 (53%), Gaps = 15/186 (8%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD------IEEEVIRFQSVLNEFKV 139
LLL ESW+E FIL +AQYL ++ +L+ +S + + + EV FQ VLN+
Sbjct: 261 LLLEESWKEFFILAMAQYLMPMNFAQLLFVYESENSNRDIVSVVAREVHAFQDVLNQLCH 320
Query: 140 LNIDPYEYDYIRAITLF-KTVIEDEVKDNRSSSSSDDGSEHPESC-------LRDVIAIA 191
LNID EY+ +RAI+LF K+ ++ ++SS GS P S L + +A
Sbjct: 321 LNIDSTEYECLRAISLFRKSPPAASSTEDLANSSILTGSGSPNSSASAESRGLLESNKVA 380
Query: 192 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 251
++ + L+ YI +P+QP RF + ++ + + S +EELFFR IG + TI +
Sbjct: 381 SMHNDARNALHNYISRTHPNQPLRFQTLLGVVSLMHKVSSFTIEELFFRKTIG-DITIVR 439
Query: 252 TIWHMY 257
I MY
Sbjct: 440 LISDMY 445
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 58/99 (58%), Gaps = 9/99 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD------IEEEVIRFQSVLNEFKV 55
LLL ESW+E FIL +AQYL ++ +L+ +S + + + EV FQ VLN+
Sbjct: 261 LLLEESWKEFFILAMAQYLMPMNFAQLLFVYESENSNRDIVSVVAREVHAFQDVLNQLCH 320
Query: 56 LNIDPYEYDYIRAITLFK---TAFTSRRELAGHLLLAES 91
LNID EY+ +RAI+LF+ A +S +LA +L S
Sbjct: 321 LNIDSTEYECLRAISLFRKSPPAASSTEDLANSSILTGS 359
>gi|6094487|sp|O16845.1|TLL_DROVI RecName: Full=Protein tailless; AltName: Full=Nuclear receptor
subfamily 2 group E member 2
gi|2440021|gb|AAB71370.1| tailless protein [Drosophila virilis]
Length = 450
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 99/186 (53%), Gaps = 15/186 (8%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD------IEEEVIRFQSVLNEFKV 139
LLL ESW+E FIL +AQYL ++ +L+ +S + + + EV FQ+V N
Sbjct: 261 LLLEESWKEFFILAMAQYLMPMNFAQLLFVYESENANREIVTIVAREVHAFQAVPNRLCH 320
Query: 140 LNIDPYEYDYIRAITLF-KTVIEDEVKDNRSSSSSDDGSEHPESC-------LRDVIAIA 191
LNID EY+ +RAI+LF K+ ++ ++SS GS P S L + +A
Sbjct: 321 LNIDSTEYECLRAISLFRKSPPAASSTEDLANSSILTGSGSPNSSASAESRGLLESSKVA 380
Query: 192 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 251
A+ + L+ YI +P+QP RF + ++ + + S +EELFFR IG + TI +
Sbjct: 381 AMHNDARNALHNYISRTHPNQPLRFQTLLGVVTLMHKVSSFTIEELFFRKTIG-DITIVR 439
Query: 252 TIWHMY 257
I MY
Sbjct: 440 LISDMY 445
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 57/99 (57%), Gaps = 9/99 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD------IEEEVIRFQSVLNEFKV 55
LLL ESW+E FIL +AQYL ++ +L+ +S + + + EV FQ+V N
Sbjct: 261 LLLEESWKEFFILAMAQYLMPMNFAQLLFVYESENANREIVTIVAREVHAFQAVPNRLCH 320
Query: 56 LNIDPYEYDYIRAITLFK---TAFTSRRELAGHLLLAES 91
LNID EY+ +RAI+LF+ A +S +LA +L S
Sbjct: 321 LNIDSTEYECLRAISLFRKSPPAASSTEDLANSSILTGS 359
>gi|125772581|ref|XP_001357592.1| GA12521 [Drosophila pseudoobscura pseudoobscura]
gi|195159108|ref|XP_002020424.1| GL13521 [Drosophila persimilis]
gi|54637324|gb|EAL26726.1| GA12521 [Drosophila pseudoobscura pseudoobscura]
gi|194117193|gb|EDW39236.1| GL13521 [Drosophila persimilis]
Length = 454
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 100/186 (53%), Gaps = 15/186 (8%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD------IEEEVIRFQSVLNEFKV 139
+LL ESW+E FIL +AQYL ++ +L+ ++ + + + EV FQ VLN+
Sbjct: 265 MLLEESWKEFFILAMAQYLMPMNFAQLLFVYEAENNNREIVGMVSREVHAFQDVLNQLCH 324
Query: 140 LNIDPYEYDYIRAITLF-KTVIEDEVKDNRSSSSSDDGSEHPESC-------LRDVIAIA 191
+N+D EY+ +RAI+LF K+ ++ ++SS GS P S L + +A
Sbjct: 325 MNVDSTEYECLRAISLFRKSPPAASSTEDLANSSILTGSGSPNSSASAESRGLLESGKVA 384
Query: 192 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 251
A+ + L+ YI +P+QP RF + ++ + + S +EELFFR IG + TI +
Sbjct: 385 AMHNDARSALHNYISRTHPNQPLRFQTLLGVVSMMHKVSSFTIEELFFRKTIG-DITIVR 443
Query: 252 TIWHMY 257
I MY
Sbjct: 444 LISDMY 449
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 58/99 (58%), Gaps = 9/99 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD------IEEEVIRFQSVLNEFKV 55
+LL ESW+E FIL +AQYL ++ +L+ ++ + + + EV FQ VLN+
Sbjct: 265 MLLEESWKEFFILAMAQYLMPMNFAQLLFVYEAENNNREIVGMVSREVHAFQDVLNQLCH 324
Query: 56 LNIDPYEYDYIRAITLFK---TAFTSRRELAGHLLLAES 91
+N+D EY+ +RAI+LF+ A +S +LA +L S
Sbjct: 325 MNVDSTEYECLRAISLFRKSPPAASSTEDLANSSILTGS 363
>gi|357627327|gb|EHJ77063.1| putative Orphan nuclear receptor NR2E1 [Danaus plexippus]
Length = 390
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 100/176 (56%), Gaps = 11/176 (6%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEE-VIRFQSVLNEFKVLNIDP 144
+LL ESWR+LF++G AQ+L LDL LV + +H ++ + + F+ L E ++ D
Sbjct: 221 ILLEESWRDLFVIGSAQFLYPLDLKVLVNT---KHTKVDSKHIADFEKALIELTKMHPDN 277
Query: 145 YEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKY 204
EY +RAI LFKT + V N S + + L+D+ A+A++Q H+Q LN+Y
Sbjct: 278 NEYACLRAIVLFKTNF-NAVHTNSLPQSHIEIKK-----LKDLPAVASLQDHSQAVLNEY 331
Query: 205 IHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 260
I +YP TR ++ L ++++ S + ELFFR IG + I++ I MY++
Sbjct: 332 ITRLYPGDTTRSNQLLQSLSAVRNVSSTTIVELFFRATIG-DIPIERIISDMYRSG 386
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%), Gaps = 4/78 (5%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEE-VIRFQSVLNEFKVLNIDP 60
+LL ESWR+LF++G AQ+L LDL LV ++H ++ + + F+ L E ++ D
Sbjct: 221 ILLEESWRDLFVIGSAQFLYPLDLKVLVN---TKHTKVDSKHIADFEKALIELTKMHPDN 277
Query: 61 YEYDYIRAITLFKTAFTS 78
EY +RAI LFKT F +
Sbjct: 278 NEYACLRAIVLFKTNFNA 295
>gi|195061143|ref|XP_001995934.1| GH14219 [Drosophila grimshawi]
gi|193891726|gb|EDV90592.1| GH14219 [Drosophila grimshawi]
Length = 445
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 99/186 (53%), Gaps = 15/186 (8%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD------IEEEVIRFQSVLNEFKV 139
LLL ESW+E FIL ++QYL ++ +L+ ++ + + + EV FQ VLN+
Sbjct: 256 LLLEESWKEFFILAMSQYLMPMNFAQLLFVYEAENANREIVAIVSREVHAFQDVLNQLCH 315
Query: 140 LNIDPYEYDYIRAITLF-KTVIEDEVKDNRSSSSSDDGSEHPESC-------LRDVIAIA 191
LNID EY+ +RAI+LF K+ ++ ++SS GS P S L + +A
Sbjct: 316 LNIDTTEYECLRAISLFRKSPPAASSTEDLANSSILTGSGSPNSSASAESRGLLESSKVA 375
Query: 192 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 251
+ + L+ YI +P+QP RF + ++ + + S +EELFFR IG + TI +
Sbjct: 376 GMHNDARNALHNYISRTHPNQPLRFQTLLGVVSLMHKVSSFTIEELFFRKTIG-DITIVR 434
Query: 252 TIWHMY 257
I MY
Sbjct: 435 LISDMY 440
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 58/99 (58%), Gaps = 9/99 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD------IEEEVIRFQSVLNEFKV 55
LLL ESW+E FIL ++QYL ++ +L+ ++ + + + EV FQ VLN+
Sbjct: 256 LLLEESWKEFFILAMSQYLMPMNFAQLLFVYEAENANREIVAIVSREVHAFQDVLNQLCH 315
Query: 56 LNIDPYEYDYIRAITLFK---TAFTSRRELAGHLLLAES 91
LNID EY+ +RAI+LF+ A +S +LA +L S
Sbjct: 316 LNIDTTEYECLRAISLFRKSPPAASSTEDLANSSILTGS 354
>gi|380021453|ref|XP_003694579.1| PREDICTED: protein tailless-like [Apis florea]
Length = 400
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 97/178 (54%), Gaps = 12/178 (6%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLNIDPYE 146
LL SWRELF+L AQ LPSLD L+ + + + EV RF+ L F +++D +E
Sbjct: 231 LLESSWRELFLLAAAQILPSLDPTPLLPP-GPQGLGLAVEVTRFRETLAGFHAMSLDQHE 289
Query: 147 YDYIRAITLFKTVIEDE----VKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLN 202
Y IRAI LFK ++ E + + S+S + GS LRD A+A ++ Q+ L
Sbjct: 290 YACIRAIVLFKAGLDSEPLPSSRSSNGSTSPNTGSR-----LRDAAAVARLRDGAQLALG 344
Query: 203 KYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 260
+ + RF K+ L+LP L+S+ + +EELFFR IG I++ I MYK A
Sbjct: 345 QRLSGASFGA-LRFGKLLLLLPSLRSVSAHAIEELFFRRTIG-VIPIERIICDMYKAA 400
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLNIDPYE 62
LL SWRELF+L AQ LPSLD L+ + + + EV RF+ L F +++D +E
Sbjct: 231 LLESSWRELFLLAAAQILPSLDPTPLLPP-GPQGLGLAVEVTRFRETLAGFHAMSLDQHE 289
Query: 63 YDYIRAITLFKTAFTS 78
Y IRAI LFK S
Sbjct: 290 YACIRAIVLFKAGLDS 305
>gi|432861654|ref|XP_004069672.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Oryzias
latipes]
Length = 416
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 94/181 (51%), Gaps = 30/181 (16%)
Query: 86 LLLAESWRELFILGLAQY------LPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKV 139
+LL ESW E+F+L + Q+ P L L EL +++ ++ + V N FK
Sbjct: 259 ILLEESWSEMFLLCVIQWSLPMDSCPLLSLPELSPKQQAKVSPPTSDLQILEEVFNRFKA 318
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHTQ 198
L +DP E+ ++AI LFK PE+ L+D + +Q +Q
Sbjct: 319 LTVDPTEFACLKAIVLFK----------------------PEARSLKDPEQVENLQDQSQ 356
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 258
+ L ++I++ YP+Q TRF ++ L+LP L + S + +LFF+ IG NT ++K + M+K
Sbjct: 357 VLLGQHIYSAYPNQSTRFGRMLLLLPSLHFVSSAKIGQLFFQRTIG-NTPMEKLLCDMFK 415
Query: 259 N 259
N
Sbjct: 416 N 416
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 2 LLLAESWRELFILGLAQY------LPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKV 55
+LL ESW E+F+L + Q+ P L L EL +++ ++ + V N FK
Sbjct: 259 ILLEESWSEMFLLCVIQWSLPMDSCPLLSLPELSPKQQAKVSPPTSDLQILEEVFNRFKA 318
Query: 56 LNIDPYEYDYIRAITLFK 73
L +DP E+ ++AI LFK
Sbjct: 319 LTVDPTEFACLKAIVLFK 336
>gi|242024443|ref|XP_002432637.1| Orphan nuclear receptor NR6A1, putative [Pediculus humanus
corporis]
gi|212518107|gb|EEB19899.1| Orphan nuclear receptor NR6A1, putative [Pediculus humanus
corporis]
Length = 438
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 100/202 (49%), Gaps = 39/202 (19%)
Query: 65 YIRAITLFKTAFTSRRELAGH---LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHV 121
++R++ F+T L+ H LLL ESW+ELF+L LAQ+ DL L+ S K+R
Sbjct: 264 WVRSLGPFQT-------LSRHDQLLLLQESWKELFLLYLAQWSIPWDLTTLLNSSKARDR 316
Query: 122 DIEEEVI-----RFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDG 176
++E+ Q ++ F+ L+ D E ++A+ LF
Sbjct: 317 LPQDEITANEIKTIQELIGRFRQLSPDLSECGCMKAVILFT------------------- 357
Query: 177 SEHPESC-LRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLE 235
PE+ L DV + +Q Q L YI YP QPTRF ++ LILP L+SI L +E
Sbjct: 358 ---PETAGLCDVQPVEMLQDQAQCILGDYIRNRYPRQPTRFGRLLLILPNLRSIRQLTVE 414
Query: 236 ELFFRNIIGHNTTIKKTIWHMY 257
+LFF+ IG I++ + MY
Sbjct: 415 QLFFKETIGE-IPIQRLLGDMY 435
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVI-----RFQSVLNEFKVL 56
LLL ESW+ELF+L LAQ+ DL L+ S K+R ++E+ Q ++ F+ L
Sbjct: 281 LLLQESWKELFLLYLAQWSIPWDLTTLLNSSKARDRLPQDEITANEIKTIQELIGRFRQL 340
Query: 57 NIDPYEYDYIRAITLF 72
+ D E ++A+ LF
Sbjct: 341 SPDLSECGCMKAVILF 356
>gi|116517488|gb|ABJ99096.1| nuclear receptor subfamily 2 group E member 3 [Danio rerio]
Length = 348
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 93/181 (51%), Gaps = 30/181 (16%)
Query: 86 LLLAESWRELFILGLAQY------LPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKV 139
+LL E+W ELF+L Q+ P L L +L + + + +V Q V + FK
Sbjct: 191 ILLEEAWSELFLLCAIQWSLPLDNCPLLSLPDLSPTGQGKGSPSASDVRVLQEVFSRFKP 250
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHTQ 198
L +DP E+ ++AI LFK PE+ L+D + +Q +Q
Sbjct: 251 LQVDPTEFACLKAIVLFK----------------------PETRGLKDPEQVENLQDQSQ 288
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 258
+ L ++IHT+YPSQ RF ++ L+LP L + S +E LFF+ IG NT ++K + M+K
Sbjct: 289 VLLAQHIHTLYPSQVARFGRLLLLLPSLHFVSSERIEHLFFQRTIG-NTPMEKLLCDMFK 347
Query: 259 N 259
N
Sbjct: 348 N 348
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 2 LLLAESWRELFILGLAQY------LPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKV 55
+LL E+W ELF+L Q+ P L L +L + + + +V Q V + FK
Sbjct: 191 ILLEEAWSELFLLCAIQWSLPLDNCPLLSLPDLSPTGQGKGSPSASDVRVLQEVFSRFKP 250
Query: 56 LNIDPYEYDYIRAITLFK 73
L +DP E+ ++AI LFK
Sbjct: 251 LQVDPTEFACLKAIVLFK 268
>gi|55925261|ref|NP_001007369.1| photoreceptor-specific nuclear receptor [Danio rerio]
gi|55250124|gb|AAH85568.1| Zgc:103631 [Danio rerio]
gi|182889208|gb|AAI64789.1| Zgc:103631 protein [Danio rerio]
Length = 419
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 93/181 (51%), Gaps = 30/181 (16%)
Query: 86 LLLAESWRELFILGLAQY------LPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKV 139
+LL E+W ELF+L Q+ P L L +L + + + +V Q V + FK
Sbjct: 262 ILLEEAWSELFLLCAIQWSLPLDNCPLLSLPDLSPTGQGKGSPSASDVRVLQEVFSRFKP 321
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHTQ 198
L +DP E+ ++AI LFK PE+ L+D + +Q +Q
Sbjct: 322 LQVDPTEFACLKAIVLFK----------------------PETRGLKDPEQVENLQDQSQ 359
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 258
+ L ++IHT+YPSQ RF ++ L+LP L + S +E LFF+ IG NT ++K + M+K
Sbjct: 360 VLLAQHIHTLYPSQVARFGRLLLLLPSLHFVSSERIEHLFFQRTIG-NTPMEKLLCDMFK 418
Query: 259 N 259
N
Sbjct: 419 N 419
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 2 LLLAESWRELFILGLAQY------LPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKV 55
+LL E+W ELF+L Q+ P L L +L + + + +V Q V + FK
Sbjct: 262 ILLEEAWSELFLLCAIQWSLPLDNCPLLSLPDLSPTGQGKGSPSASDVRVLQEVFSRFKP 321
Query: 56 LNIDPYEYDYIRAITLFK 73
L +DP E+ ++AI LFK
Sbjct: 322 LQVDPTEFACLKAIVLFK 339
>gi|327285350|ref|XP_003227397.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Anolis
carolinensis]
Length = 418
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 91/181 (50%), Gaps = 30/181 (16%)
Query: 86 LLLAESWRELFILGLAQY------LPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKV 139
+LL E+W ELF+L Q+ P L + +L + + V ++ Q V+ FK
Sbjct: 261 ILLEEAWSELFLLCAIQWSLPLETCPLLSVSDLAPALNGKLVSGGTDIRALQEVIARFKA 320
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHTQ 198
L +DP E+ ++AI LFK PE+ L+D + +Q +Q
Sbjct: 321 LAVDPTEFACMKAIVLFK----------------------PETRGLKDPDQVENLQDQSQ 358
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 258
+ L ++ YPSQP RF K+ L+LP LK I S +E LFFR IG NT ++K + M+K
Sbjct: 359 VMLGQHNQIHYPSQPVRFGKLLLLLPSLKFISSDRIELLFFRRTIG-NTPMEKLLCDMFK 417
Query: 259 N 259
N
Sbjct: 418 N 418
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 2 LLLAESWRELFILGLAQY------LPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKV 55
+LL E+W ELF+L Q+ P L + +L + + V ++ Q V+ FK
Sbjct: 261 ILLEEAWSELFLLCAIQWSLPLETCPLLSVSDLAPALNGKLVSGGTDIRALQEVIARFKA 320
Query: 56 LNIDPYEYDYIRAITLFK 73
L +DP E+ ++AI LFK
Sbjct: 321 LAVDPTEFACMKAIVLFK 338
>gi|307213614|gb|EFN89000.1| Nuclear receptor subfamily 2 group E member 1 [Harpegnathos
saltator]
Length = 415
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 98/176 (55%), Gaps = 5/176 (2%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLNIDPY 145
+LL SWRELF+L AQ +P+LD L+ SR +++ EV RF+ L F +N+D
Sbjct: 242 MLLEASWRELFLLATAQLMPTLDPTPLIPP-TSRGIELAIEVNRFRETLASFHGMNLDFQ 300
Query: 146 EYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC--LRDVIAIAAIQGHTQIFLNK 203
E+ YIRAI FK +E + + +SSS + + LR+ A+A ++ Q+ L +
Sbjct: 301 EFSYIRAIVHFKAGLECDSLSSSRNSSSSSSTSSSSTPNRLRNPTAVARLRDSAQLALGQ 360
Query: 204 YIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKN 259
+ + RF K+ L+LP L+S+ + + ELFF++ IG I++ I MY+
Sbjct: 361 RLSSANYGA-LRFGKMLLLLPSLRSVSANSIAELFFKSTIGV-IPIERIICDMYRG 414
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLNIDPY 61
+LL SWRELF+L AQ +P+LD L+ SR +++ EV RF+ L F +N+D
Sbjct: 242 MLLEASWRELFLLATAQLMPTLDPTPLIPP-TSRGIELAIEVNRFRETLASFHGMNLDFQ 300
Query: 62 EYDYIRAITLFKTAF 76
E+ YIRAI FK
Sbjct: 301 EFSYIRAIVHFKAGL 315
>gi|354473494|ref|XP_003498970.1| PREDICTED: photoreceptor-specific nuclear receptor [Cricetulus
griseus]
Length = 403
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 93/181 (51%), Gaps = 30/181 (16%)
Query: 86 LLLAESWRELFILGLAQY------LPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKV 139
+LL E+W ELF+LG Q+ P L E +SR V E+ Q ++ F+
Sbjct: 246 ILLEEAWNELFLLGAIQWSLPLDSCPLLAPPEASGGSQSRLVLASAEMRFLQETISRFRA 305
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHTQ 198
L +DP E+ ++A+ LFK PE+ L+D + A+Q +Q
Sbjct: 306 LAVDPTEFACMKALVLFK----------------------PETRGLKDPEHVEALQDQSQ 343
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 258
+ L+++ +PSQP RF K+ L+LP L+ I + +E LFFR IG NT ++K + M+K
Sbjct: 344 VMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIG-NTPMEKLLCDMFK 402
Query: 259 N 259
N
Sbjct: 403 N 403
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 2 LLLAESWRELFILGLAQY------LPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKV 55
+LL E+W ELF+LG Q+ P L E +SR V E+ Q ++ F+
Sbjct: 246 ILLEEAWNELFLLGAIQWSLPLDSCPLLAPPEASGGSQSRLVLASAEMRFLQETISRFRA 305
Query: 56 LNIDPYEYDYIRAITLFK 73
L +DP E+ ++A+ LFK
Sbjct: 306 LAVDPTEFACMKALVLFK 323
>gi|344248427|gb|EGW04531.1| Photoreceptor-specific nuclear receptor [Cricetulus griseus]
Length = 395
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 93/181 (51%), Gaps = 30/181 (16%)
Query: 86 LLLAESWRELFILGLAQY------LPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKV 139
+LL E+W ELF+LG Q+ P L E +SR V E+ Q ++ F+
Sbjct: 238 ILLEEAWNELFLLGAIQWSLPLDSCPLLAPPEASGGSQSRLVLASAEMRFLQETISRFRA 297
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHTQ 198
L +DP E+ ++A+ LFK PE+ L+D + A+Q +Q
Sbjct: 298 LAVDPTEFACMKALVLFK----------------------PETRGLKDPEHVEALQDQSQ 335
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 258
+ L+++ +PSQP RF K+ L+LP L+ I + +E LFFR IG NT ++K + M+K
Sbjct: 336 VMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIG-NTPMEKLLCDMFK 394
Query: 259 N 259
N
Sbjct: 395 N 395
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 2 LLLAESWRELFILGLAQY------LPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKV 55
+LL E+W ELF+LG Q+ P L E +SR V E+ Q ++ F+
Sbjct: 238 ILLEEAWNELFLLGAIQWSLPLDSCPLLAPPEASGGSQSRLVLASAEMRFLQETISRFRA 297
Query: 56 LNIDPYEYDYIRAITLFK 73
L +DP E+ ++A+ LFK
Sbjct: 298 LAVDPTEFACMKALVLFK 315
>gi|91077386|ref|XP_975255.1| PREDICTED: similar to Dissatisfaction (Dsf) [Tribolium castaneum]
gi|270002823|gb|EEZ99270.1| dissatisfaction [Tribolium castaneum]
Length = 483
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 92/189 (48%), Gaps = 38/189 (20%)
Query: 65 YIRAITLFKTAFTSRRELAGH---LLLAESWRELFILGLAQYLPSLDLGELVESCKSRH- 120
++R + F+T L+ H LLL ESW+ELF+L LAQ+ DL L+ ++R
Sbjct: 302 WVRCLAPFQT-------LSKHDQLLLLQESWKELFLLHLAQWSVPWDLSALLGCPQARER 354
Query: 121 ----VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDG 176
+ E+ Q ++ F+ ++ D E ++AI LF
Sbjct: 355 LPADIHTATEIKTIQEIMCRFRQISPDGSECGCMKAIILFT------------------- 395
Query: 177 SEHPESC-LRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLE 235
PE+ L DV + +Q Q L Y+ T YP QPTRF ++ L++P L++I SL +E
Sbjct: 396 ---PETAGLCDVQPVEMLQDQAQCILGDYVRTRYPRQPTRFGRLLLLVPSLRAIRSLTVE 452
Query: 236 ELFFRNIIG 244
LFF+ IG
Sbjct: 453 LLFFKETIG 461
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRH-----VDIEEEVIRFQSVLNEFKVL 56
LLL ESW+ELF+L LAQ+ DL L+ ++R + E+ Q ++ F+ +
Sbjct: 319 LLLQESWKELFLLHLAQWSVPWDLSALLGCPQARERLPADIHTATEIKTIQEIMCRFRQI 378
Query: 57 NIDPYEYDYIRAITLF 72
+ D E ++AI LF
Sbjct: 379 SPDGSECGCMKAIILF 394
>gi|156359518|ref|XP_001624815.1| predicted protein [Nematostella vectensis]
gi|156211616|gb|EDO32715.1| predicted protein [Nematostella vectensis]
Length = 327
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 90/183 (49%), Gaps = 23/183 (12%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEF 137
+LL E W ELF+L AQ+ LD+G L+ + R V ++ Q+++ F
Sbjct: 160 ILLEEGWSELFVLSSAQFSLPLDMGPLLSAAGLQVDKAPTDRIVAGMADIRLLQNIVTRF 219
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
K L ID EY ++AI LFK V+ + R LR + +Q
Sbjct: 220 KRLQIDSTEYACLKAIVLFKPVLPFFPVNLRG--------------LRAPQLVERLQDQA 265
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q L +Y + YP Q RF K+ L+LP LK++ ++E+LFFR + N I++ + M+
Sbjct: 266 QSMLGEYCRSQYPDQQVRFGKLLLMLPSLKTVSPKMIEDLFFRGTL-DNVPIERMLCDMF 324
Query: 258 KNA 260
K++
Sbjct: 325 KSS 327
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 62/141 (43%), Gaps = 20/141 (14%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEF 53
+LL E W ELF+L AQ+ LD+G L+ + R V ++ Q+++ F
Sbjct: 160 ILLEEGWSELFVLSSAQFSLPLDMGPLLSAAGLQVDKAPTDRIVAGMADIRLLQNIVTRF 219
Query: 54 KVLNIDPYEYDYIRAITLFKTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELV 113
K L ID EY ++AI LFK + R L L + L L
Sbjct: 220 KRLQIDSTEYACLKAIVLFKPVLP---------FFPVNLRGLRAPQLVERLQDQAQSMLG 270
Query: 114 ESCKSRHVDIEEEVIRFQSVL 134
E C+S++ D + +RF +L
Sbjct: 271 EYCRSQYPD---QQVRFGKLL 288
>gi|291232327|ref|XP_002736110.1| PREDICTED: tailless-like [Saccoglossus kowalevskii]
Length = 407
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 87/183 (47%), Gaps = 30/183 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCK--------SRHVDIEEEVIRFQSVLNEF 137
+LL E WR+LF+LGL+Q+ +D ++ K + I EV Q +
Sbjct: 247 ILLEEGWRDLFMLGLSQWSVPMDEKSILSLAKLSSENTPQEKLSQIMTEVRHMQDNVRRL 306
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ + +D EY ++AI++FK+ LRD + +Q
Sbjct: 307 QKMGLDATEYACLKAISIFKSETHG---------------------LRDAHQVETLQDQA 345
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ L Y+ Y QP RF K L+LP L+SI S LE LFFR+ IG + I++ + M+
Sbjct: 346 QVMLGDYLRHQYARQPVRFGKCLLMLPSLRSISSRTLEMLFFRDTIG-SIPIERLLCDMF 404
Query: 258 KNA 260
+N+
Sbjct: 405 QNS 407
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCK--------SRHVDIEEEVIRFQSVLNEF 53
+LL E WR+LF+LGL+Q+ +D ++ K + I EV Q +
Sbjct: 247 ILLEEGWRDLFMLGLSQWSVPMDEKSILSLAKLSSENTPQEKLSQIMTEVRHMQDNVRRL 306
Query: 54 KVLNIDPYEYDYIRAITLFKT 74
+ + +D EY ++AI++FK+
Sbjct: 307 QKMGLDATEYACLKAISIFKS 327
>gi|432111648|gb|ELK34747.1| Photoreceptor-specific nuclear receptor [Myotis davidii]
Length = 404
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 94/183 (51%), Gaps = 32/183 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVE--------SCKSRHVDIEEEVIRFQSVLNEF 137
+LL E+W ELF+LG Q+ LD L+ S + R E+ Q ++ F
Sbjct: 245 ILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGSSQGRLALASAEMRFLQETISRF 304
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGH 196
+VL +DP E+ ++A+ LFK PE+ L+D + A+Q
Sbjct: 305 RVLAVDPTEFACMKALVLFK----------------------PETRGLKDPEHVEALQDQ 342
Query: 197 TQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
+Q+ L+++ +PSQP RF K+ L+LP L+ I S +E LFFR IG NT ++K + M
Sbjct: 343 SQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITSERIELLFFRKTIG-NTPMEKLLCDM 401
Query: 257 YKN 259
+KN
Sbjct: 402 FKN 404
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVE--------SCKSRHVDIEEEVIRFQSVLNEF 53
+LL E+W ELF+LG Q+ LD L+ S + R E+ Q ++ F
Sbjct: 245 ILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGSSQGRLALASAEMRFLQETISRF 304
Query: 54 KVLNIDPYEYDYIRAITLFK 73
+VL +DP E+ ++A+ LFK
Sbjct: 305 RVLAVDPTEFACMKALVLFK 324
>gi|291225515|ref|XP_002732745.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
Length = 405
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 95/182 (52%), Gaps = 30/182 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEE------EVIRFQSVLNEFKV 139
+LL E W ELF+L AQ+ L+LG L+ + + + ++ ++ Q ++ F
Sbjct: 247 ILLEEGWNELFLLSAAQWAIPLELGSLLSAISAHPNNGDKMPCLMADIRTLQDTMSRFNA 306
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHTQ 198
+ +D EY ++A+ LFK PE+ LR+++ + +Q Q
Sbjct: 307 MQVDATEYACLKAVVLFK----------------------PETRGLREMVQVETLQDQAQ 344
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 258
+ L +Y H +PSQ RF ++ L+LP LK++ + +EE+FFR IG + I++ + M+K
Sbjct: 345 LMLGEYTHARFPSQRVRFGRLLLLLPALKAVSARAIEEIFFRRTIG-SIPIERLLCDMFK 403
Query: 259 NA 260
++
Sbjct: 404 SS 405
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEE------EVIRFQSVLNEFKV 55
+LL E W ELF+L AQ+ L+LG L+ + + + ++ ++ Q ++ F
Sbjct: 247 ILLEEGWNELFLLSAAQWAIPLELGSLLSAISAHPNNGDKMPCLMADIRTLQDTMSRFNA 306
Query: 56 LNIDPYEYDYIRAITLFKTAFTSRREL 82
+ +D EY ++A+ LFK RE+
Sbjct: 307 MQVDATEYACLKAVVLFKPETRGLREM 333
>gi|269315847|ref|NP_001161372.1| photoreceptor-specific nuclear receptor [Bos taurus]
gi|296483590|tpg|DAA25705.1| TPA: photoreceptor-specific nuclear receptor [Bos taurus]
Length = 411
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 93/183 (50%), Gaps = 32/183 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVE--------SCKSRHVDIEEEVIRFQSVLNEF 137
+LL E+W ELF+LG Q+ LD L+ S + R V E Q ++ F
Sbjct: 252 ILLEEAWSELFLLGAIQWSLPLDNCPLLALPEASAGGSSQGRLVLASAETRILQETISRF 311
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGH 196
+ L +DP E+ ++A+ LFK PE+ L+D + A+Q
Sbjct: 312 RALAVDPTEFACMKALVLFK----------------------PETRGLKDPEHVEALQDQ 349
Query: 197 TQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
+Q+ L+++ +PSQP RF K+ L+LP L+ I S +E LFFR IG NT ++K + M
Sbjct: 350 SQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFISSERVELLFFRKTIG-NTPMEKLLCDM 408
Query: 257 YKN 259
+KN
Sbjct: 409 FKN 411
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVE--------SCKSRHVDIEEEVIRFQSVLNEF 53
+LL E+W ELF+LG Q+ LD L+ S + R V E Q ++ F
Sbjct: 252 ILLEEAWSELFLLGAIQWSLPLDNCPLLALPEASAGGSSQGRLVLASAETRILQETISRF 311
Query: 54 KVLNIDPYEYDYIRAITLFK 73
+ L +DP E+ ++A+ LFK
Sbjct: 312 RALAVDPTEFACMKALVLFK 331
>gi|147900594|ref|NP_001090633.1| nuclear receptor subfamily 2, group E, member 3 [Xenopus (Silurana)
tropicalis]
gi|115392210|gb|ABI96907.1| nuclear hormone receptor Nr2e3 [Xenopus (Silurana) tropicalis]
Length = 404
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 89/181 (49%), Gaps = 30/181 (16%)
Query: 86 LLLAESWRELFILGLAQY------LPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKV 139
+LL E+W ELF+L Q+ P L + +L + V +V Q ++ FK
Sbjct: 247 ILLEEAWSELFLLCAIQWSMPLDSCPLLSVPDLSSQVHGKSVSSTIDVRILQETISRFKS 306
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHTQ 198
LN+DP E+ ++A+ LFK PE+ L+D I +Q +Q
Sbjct: 307 LNVDPTEFACLKAVLLFK----------------------PETRGLKDPEQIENLQDQSQ 344
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 258
+ L ++ YP+QP RF K+ L+ P L+ I S +E LFF IG NT ++K + M+K
Sbjct: 345 MMLAQHTRNQYPAQPVRFGKLLLLSPSLRFISSERIELLFFHRTIG-NTPMEKLLCDMFK 403
Query: 259 N 259
N
Sbjct: 404 N 404
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 2 LLLAESWRELFILGLAQY------LPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKV 55
+LL E+W ELF+L Q+ P L + +L + V +V Q ++ FK
Sbjct: 247 ILLEEAWSELFLLCAIQWSMPLDSCPLLSVPDLSSQVHGKSVSSTIDVRILQETISRFKS 306
Query: 56 LNIDPYEYDYIRAITLFK 73
LN+DP E+ ++A+ LFK
Sbjct: 307 LNVDPTEFACLKAVLLFK 324
>gi|297522148|gb|ADI44343.1| tailless protein [Clogmia albipunctata]
Length = 437
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 100/198 (50%), Gaps = 22/198 (11%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGE--------------LVESCKSRH 120
AFT ++L+ ESWRELFIL AQY+ ++ + LV +
Sbjct: 226 AFTELPRSDQYILVEESWRELFILSSAQYMAPINFHQLLHAYALLDSYNINLVGRTRVSP 285
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
++ EV FQ +LN+ L ID E++Y+R I LFKT + V + S S+DDG
Sbjct: 286 LNFFSEVENFQKILNKMSQLRIDYDEFEYLREIILFKTNPDKNV--DTSDFSTDDG---- 339
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPT-RFCKIQLILPRLKSIPSLVLEELFF 239
S ++++ I +Q + + L +I YP +P RF ++LILP L + + + ELFF
Sbjct: 340 RSTVQELDKIRKLQENARNKLANHISEKYPIEPQLRFRSLELILPELNFVSNNTIGELFF 399
Query: 240 RNIIGHNTTIKKTIWHMY 257
+ + I KTI MY
Sbjct: 400 NSDV-RIAGIGKTIADMY 416
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 14/88 (15%)
Query: 1 HLLLAESWRELFILGLAQYLPSLDLGEL--------------VESCKSRHVDIEEEVIRF 46
++L+ ESWRELFIL AQY+ ++ +L V + ++ EV F
Sbjct: 236 YILVEESWRELFILSSAQYMAPINFHQLLHAYALLDSYNINLVGRTRVSPLNFFSEVENF 295
Query: 47 QSVLNEFKVLNIDPYEYDYIRAITLFKT 74
Q +LN+ L ID E++Y+R I LFKT
Sbjct: 296 QKILNKMSQLRIDYDEFEYLREIILFKT 323
>gi|440897500|gb|ELR49170.1| Photoreceptor-specific nuclear receptor, partial [Bos grunniens
mutus]
Length = 427
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 93/183 (50%), Gaps = 32/183 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVE--------SCKSRHVDIEEEVIRFQSVLNEF 137
+LL E+W ELF+LG Q+ LD L+ S + R V E Q ++ F
Sbjct: 268 ILLEEAWSELFLLGAIQWSLPLDNCPLLALPEASAGGSSQGRLVLASAETRILQETISRF 327
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGH 196
+ L +DP E+ ++A+ LFK PE+ L+D + A+Q
Sbjct: 328 RALAVDPTEFACMKALVLFK----------------------PETRGLKDPEHVEALQDQ 365
Query: 197 TQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
+Q+ L+++ +PSQP RF K+ L+LP L+ I S +E LFFR IG NT ++K + M
Sbjct: 366 SQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFISSERVELLFFRKTIG-NTPMEKLLCDM 424
Query: 257 YKN 259
+KN
Sbjct: 425 FKN 427
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVE--------SCKSRHVDIEEEVIRFQSVLNEF 53
+LL E+W ELF+LG Q+ LD L+ S + R V E Q ++ F
Sbjct: 268 ILLEEAWSELFLLGAIQWSLPLDNCPLLALPEASAGGSSQGRLVLASAETRILQETISRF 327
Query: 54 KVLNIDPYEYDYIRAITLFK 73
+ L +DP E+ ++A+ LFK
Sbjct: 328 RALAVDPTEFACMKALVLFK 347
>gi|443688970|gb|ELT91492.1| hypothetical protein CAPTEDRAFT_53417, partial [Capitella teleta]
Length = 390
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 90/183 (49%), Gaps = 11/183 (6%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVES---CKSRH-----VDIEEEVIRFQSVLNEF 137
+LL ESW ELFIL AQ+ LD L+ + H + ++ + ++ F
Sbjct: 211 ILLEESWSELFILSAAQWSLPLDPNSLLSANGVANDNHPSDTPAAMMAQIRAMKDIVARF 270
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
L +D E ++A+ LFK V + S + SE PE LRD + ++Q
Sbjct: 271 NALRVDATECACLKALVLFKAGRHLVVFGSIISVTKLPSSELPE--LRDCSQVESLQDQA 328
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ L YI YPS RF K+ L+LP LK+I LE LFF IG N +++ + M+
Sbjct: 329 QLMLRDYIFQQYPSNKFRFGKLILLLPALKTISPRTLERLFFGKTIG-NVPVERLLCDMF 387
Query: 258 KNA 260
K++
Sbjct: 388 KSS 390
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVES---CKSRH-----VDIEEEVIRFQSVLNEF 53
+LL ESW ELFIL AQ+ LD L+ + H + ++ + ++ F
Sbjct: 211 ILLEESWSELFILSAAQWSLPLDPNSLLSANGVANDNHPSDTPAAMMAQIRAMKDIVARF 270
Query: 54 KVLNIDPYEYDYIRAITLFKTA 75
L +D E ++A+ LFK
Sbjct: 271 NALRVDATECACLKALVLFKAG 292
>gi|441617194|ref|XP_004088427.1| PREDICTED: LOW QUALITY PROTEIN: photoreceptor-specific nuclear
receptor [Nomascus leucogenys]
Length = 562
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 93/185 (50%), Gaps = 36/185 (19%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD----------IEEEVIRFQSVLN 135
+LL E+W ELF+LG Q+ LD L+ ++ +E V+R ++
Sbjct: 403 ILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAQGRLTLASMETRVLR--ETIS 460
Query: 136 EFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQ 194
F+ L +DP E+ ++A+ LFK PE+ L+D + A+Q
Sbjct: 461 RFRALAVDPTEFACMKALVLFK----------------------PETRGLKDPEHVEALQ 498
Query: 195 GHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIW 254
+Q+ L+++ +PSQP RF K+ L LP L+ I + +E LFFR IG NT ++K +
Sbjct: 499 DQSQVMLSQHSKAHHPSQPVRFGKLLLXLPSLRFITAERIELLFFRKTIG-NTPMEKLLC 557
Query: 255 HMYKN 259
M+KN
Sbjct: 558 DMFKN 562
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 12/82 (14%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD----------IEEEVIRFQSVLN 51
+LL E+W ELF+LG Q+ LD L+ ++ +E V+R ++
Sbjct: 403 ILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAQGRLTLASMETRVLR--ETIS 460
Query: 52 EFKVLNIDPYEYDYIRAITLFK 73
F+ L +DP E+ ++A+ LFK
Sbjct: 461 RFRALAVDPTEFACMKALVLFK 482
>gi|395822830|ref|XP_003784710.1| PREDICTED: photoreceptor-specific nuclear receptor [Otolemur
garnettii]
Length = 693
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 89/182 (48%), Gaps = 30/182 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGEL--------VESCKSRHVDIEEEVIRFQSVLNEF 137
+LL E+W ELF+LG Q+ LD L + RH E+ + ++ F
Sbjct: 534 ILLEEAWSELFLLGAIQWSLPLDGCPLLVPPEASAASGSQGRHTLASMEMRILRETISRF 593
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ L +DP E+ ++A+ LFK L+D + A+Q +
Sbjct: 594 RALAVDPTEFACMKALVLFKPETRG---------------------LKDPEHVEALQDQS 632
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ L+++ +PSQP RF K+ L+LP L+ I S +E LFFR IG NT ++K + M+
Sbjct: 633 QVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITSERIELLFFRKTIG-NTPMEKLLCDMF 691
Query: 258 KN 259
KN
Sbjct: 692 KN 693
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGEL--------VESCKSRHVDIEEEVIRFQSVLNEF 53
+LL E+W ELF+LG Q+ LD L + RH E+ + ++ F
Sbjct: 534 ILLEEAWSELFLLGAIQWSLPLDGCPLLVPPEASAASGSQGRHTLASMEMRILRETISRF 593
Query: 54 KVLNIDPYEYDYIRAITLFK 73
+ L +DP E+ ++A+ LFK
Sbjct: 594 RALAVDPTEFACMKALVLFK 613
>gi|410912674|ref|XP_003969814.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Takifugu
rubripes]
Length = 431
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 91/181 (50%), Gaps = 30/181 (16%)
Query: 86 LLLAESWRELFILGLAQY------LPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKV 139
+LL E+W ELF+L Q+ P L L +L + + ++ Q V + FK
Sbjct: 274 ILLEEAWSELFLLCAIQWSLPLESCPLLSLPDLCPGIQGKGSYTSLDLRLLQEVFSRFKT 333
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHTQ 198
L +DP E+ ++AI LFK PE+ L+D + +Q +Q
Sbjct: 334 LAVDPTEFACLKAIVLFK----------------------PETRGLKDPEQVENLQDQSQ 371
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 258
+ L ++I + YPSQP RF K+ L+LP L+ + S +E LFF IG NT ++K + M+K
Sbjct: 372 VMLGQHIRSHYPSQPARFGKLLLLLPSLRFVNSERIELLFFHRTIG-NTPMEKLLCDMFK 430
Query: 259 N 259
N
Sbjct: 431 N 431
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 2 LLLAESWRELFILGLAQY------LPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKV 55
+LL E+W ELF+L Q+ P L L +L + + ++ Q V + FK
Sbjct: 274 ILLEEAWSELFLLCAIQWSLPLESCPLLSLPDLCPGIQGKGSYTSLDLRLLQEVFSRFKT 333
Query: 56 LNIDPYEYDYIRAITLFK 73
L +DP E+ ++AI LFK
Sbjct: 334 LAVDPTEFACLKAIVLFK 351
>gi|348533763|ref|XP_003454374.1| PREDICTED: photoreceptor-specific nuclear receptor-like
[Oreochromis niloticus]
Length = 426
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 91/181 (50%), Gaps = 30/181 (16%)
Query: 86 LLLAESWRELFILGLAQY------LPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKV 139
+LL E+W ELF+L Q+ P L L +L + + ++ Q V + FK
Sbjct: 269 ILLEEAWSELFLLCAIQWSLPLDSCPLLSLPDLCPGMQGKTSYTSLDLRLLQEVFSRFKA 328
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHTQ 198
L +DP E+ ++AI LFK PE+ L+D + +Q +Q
Sbjct: 329 LAVDPTEFACLKAIVLFK----------------------PETRGLKDPEQVENLQDQSQ 366
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 258
+ L ++I + YPSQP RF K+ L+LP L+ + S +E LFF IG NT ++K + M+K
Sbjct: 367 VMLGQHIRSHYPSQPARFGKLLLLLPSLRFVNSERIELLFFHRTIG-NTPMEKLLCDMFK 425
Query: 259 N 259
N
Sbjct: 426 N 426
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 2 LLLAESWRELFILGLAQY------LPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKV 55
+LL E+W ELF+L Q+ P L L +L + + ++ Q V + FK
Sbjct: 269 ILLEEAWSELFLLCAIQWSLPLDSCPLLSLPDLCPGMQGKTSYTSLDLRLLQEVFSRFKA 328
Query: 56 LNIDPYEYDYIRAITLFK 73
L +DP E+ ++AI LFK
Sbjct: 329 LAVDPTEFACLKAIVLFK 346
>gi|156376476|ref|XP_001630386.1| predicted protein [Nematostella vectensis]
gi|156217406|gb|EDO38323.1| predicted protein [Nematostella vectensis]
Length = 358
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 92/183 (50%), Gaps = 32/183 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEF 137
+LL E WRELF+LG +Q+ L++ ++ + + VD+ V Q +N+F
Sbjct: 197 ILLEEGWRELFLLGASQWSMPLEIAPILAASGMHVDNTPPEKIVDVMATVRTLQEAVNKF 256
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGH 196
K +D E+ ++AI LFK P +C L+D I Q
Sbjct: 257 KAFGVDSTEFACLKAIVLFK----------------------PAACGLKDPEQIETTQDQ 294
Query: 197 TQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q+ L +YI + YP+Q RF ++ L+LP L+ + +L +EELFF+ IG I++ + M
Sbjct: 295 AQLMLGEYIRSTYPTQVARFGRLLLLLPALRRVSALAIEELFFKKTIG-TVPIERLLSDM 353
Query: 257 YKN 259
+KN
Sbjct: 354 FKN 356
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 16/118 (13%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEF 53
+LL E WRELF+LG +Q+ L++ ++ + + VD+ V Q +N+F
Sbjct: 197 ILLEEGWRELFLLGASQWSMPLEIAPILAASGMHVDNTPPEKIVDVMATVRTLQEAVNKF 256
Query: 54 KVLNIDPYEYDYIRAITLFKTAFTSRREL--------AGHLLLAESWRELFILGLAQY 103
K +D E+ ++AI LFK A ++ L+L E R + +A++
Sbjct: 257 KAFGVDSTEFACLKAIVLFKPAACGLKDPEQIETTQDQAQLMLGEYIRSTYPTQVARF 314
>gi|410960926|ref|XP_003987038.1| PREDICTED: photoreceptor-specific nuclear receptor [Felis catus]
Length = 411
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 92/183 (50%), Gaps = 32/183 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVE--------SCKSRHVDIEEEVIRFQSVLNEF 137
+LL E+W ELF+LG Q+ LD L+ S + R E Q ++ F
Sbjct: 252 ILLEEAWSELFLLGAIQWSLPLDSCPLLAAPEASAAGSSQGRLALASAESRVLQETISRF 311
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGH 196
+ L +DP E+ ++A+ LFK PE+ L+D + A+Q
Sbjct: 312 RALAVDPTEFACMKALVLFK----------------------PETRGLKDPEHVEALQDQ 349
Query: 197 TQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
+Q+ L+++ +PSQP RF K+ L+LP L+ I S +E LFFR IG NT ++K + M
Sbjct: 350 SQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITSERVELLFFRKTIG-NTPMEKLLCDM 408
Query: 257 YKN 259
+KN
Sbjct: 409 FKN 411
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVE--------SCKSRHVDIEEEVIRFQSVLNEF 53
+LL E+W ELF+LG Q+ LD L+ S + R E Q ++ F
Sbjct: 252 ILLEEAWSELFLLGAIQWSLPLDSCPLLAAPEASAAGSSQGRLALASAESRVLQETISRF 311
Query: 54 KVLNIDPYEYDYIRAITLFK 73
+ L +DP E+ ++A+ LFK
Sbjct: 312 RALAVDPTEFACMKALVLFK 331
>gi|348505631|ref|XP_003440364.1| PREDICTED: photoreceptor-specific nuclear receptor-like
[Oreochromis niloticus]
Length = 421
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 95/180 (52%), Gaps = 28/180 (15%)
Query: 86 LLLAESWRELFILGLAQY------LPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKV 139
+LL E+W E+F+L Q+ P L L +L ++ + ++ + V + FK
Sbjct: 264 ILLEEAWSEMFLLCAIQWSLPMDSCPLLSLPDLSIPQQANISLLTADLQILEEVFSRFKA 323
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQI 199
L +DP E+ ++AI LFK EV++ L+D + +Q +Q+
Sbjct: 324 LTVDPTEFACLKAIVLFKP----EVRN-----------------LKDPEQVENLQDQSQV 362
Query: 200 FLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKN 259
L ++IH+VYP+Q RF ++ L+LP L+ + S + +LFF+ IG +T ++K + M+KN
Sbjct: 363 LLGQHIHSVYPNQGARFGRLILLLPSLRFVNSEKIAKLFFQRTIG-STPMEKLLCDMFKN 421
Score = 40.8 bits (94), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 2 LLLAESWRELFILGLAQY------LPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKV 55
+LL E+W E+F+L Q+ P L L +L ++ + ++ + V + FK
Sbjct: 264 ILLEEAWSEMFLLCAIQWSLPMDSCPLLSLPDLSIPQQANISLLTADLQILEEVFSRFKA 323
Query: 56 LNIDPYEYDYIRAITLFK 73
L +DP E+ ++AI LFK
Sbjct: 324 LTVDPTEFACLKAIVLFK 341
>gi|344284423|ref|XP_003413967.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Loxodonta
africana]
Length = 608
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 89/182 (48%), Gaps = 30/182 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGEL--------VESCKSRHVDIEEEVIRFQSVLNEF 137
+LL E+W ELF+LG Q+ LD L S + R E+ Q ++ F
Sbjct: 449 ILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEAPAASSSQGRLKLASMEIHALQETISRF 508
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ L +DP E+ ++A+ LF+ L+D + A+Q +
Sbjct: 509 RALAVDPTEFACMKALVLFRPETRG---------------------LKDPENVEALQDQS 547
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ L+++ +PSQP RF K+ L+LP L+ I S +E LFFR IG NT ++K + M+
Sbjct: 548 QVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITSERIELLFFRKTIG-NTPMEKLLCDMF 606
Query: 258 KN 259
KN
Sbjct: 607 KN 608
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGEL--------VESCKSRHVDIEEEVIRFQSVLNEF 53
+LL E+W ELF+LG Q+ LD L S + R E+ Q ++ F
Sbjct: 449 ILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEAPAASSSQGRLKLASMEIHALQETISRF 508
Query: 54 KVLNIDPYEYDYIRAITLFK 73
+ L +DP E+ ++A+ LF+
Sbjct: 509 RALAVDPTEFACMKALVLFR 528
>gi|195342848|ref|XP_002038010.1| GM18580 [Drosophila sechellia]
gi|194132860|gb|EDW54428.1| GM18580 [Drosophila sechellia]
Length = 196
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 89/179 (49%), Gaps = 29/179 (16%)
Query: 85 HLLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR-----FQSVLNEFKV 139
HLLL ESW+ELF+L LAQ+ LDL ++ES R +++E + Q +L F+
Sbjct: 32 HLLLQESWKELFLLNLAQWTIPLDLTPILESPLIRERVLQDEATQTEMKTIQEILCRFRQ 91
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHTQ 198
+ D E ++AI LF PE+ L DV + +Q Q
Sbjct: 92 ITPDGSEVGCMKAIALFA----------------------PETAGLCDVQPVEMLQDQAQ 129
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
L+ ++ YP Q TRF ++ L+LP L++I + +E LFF+ IG N I + + MY
Sbjct: 130 CILSDHVRLRYPRQATRFGRLLLLLPSLRTIRAATIEALFFKETIG-NVPIARLLRDMY 187
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 1 HLLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR-----FQSVLNEFKV 55
HLLL ESW+ELF+L LAQ+ LDL ++ES R +++E + Q +L F+
Sbjct: 32 HLLLQESWKELFLLNLAQWTIPLDLTPILESPLIRERVLQDEATQTEMKTIQEILCRFRQ 91
Query: 56 LNIDPYEYDYIRAITLF 72
+ D E ++AI LF
Sbjct: 92 ITPDGSEVGCMKAIALF 108
>gi|91092158|ref|XP_967537.1| PREDICTED: similar to COUP-TF/Svp nuclear hormone receptor
[Tribolium castaneum]
gi|270015100|gb|EFA11548.1| seven up [Tribolium castaneum]
Length = 419
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 87/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES--------CKSRHVDIEEEVIRFQSVLNEFK 138
LL W ELF+L +Q L + L+ + C R V + + FQ + + K
Sbjct: 252 LLRLVWSELFVLNASQCSMPLHVAPLIAAAGLHASPMCADRVVQFMDHIRIFQEQVEKLK 311
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF T ++C L DV I +IQ +
Sbjct: 312 ALHVDSAEYSCLKAIVLFTT----------------------DACGLSDVAHIESIQEKS 349
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 350 QCALEEYCRSQYPNQPTRFGKLLLRLPSLRTVSSAVIEQLFFVRLVGK-TPIETLIRDM 407
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------CKSRHVDIEEEVIRFQSVLNEFK 54
LL W ELF+L +Q L + L+ + C R V + + FQ + + K
Sbjct: 252 LLRLVWSELFVLNASQCSMPLHVAPLIAAAGLHASPMCADRVVQFMDHIRIFQEQVEKLK 311
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF T
Sbjct: 312 ALHVDSAEYSCLKAIVLFTT 331
>gi|405977938|gb|EKC42362.1| Nuclear receptor subfamily 2 group F member 1-A [Crassostrea gigas]
Length = 435
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 92/184 (50%), Gaps = 15/184 (8%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL SW ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 248 LLRVSWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLK 307
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDE-VKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
L++D EY ++AI LF + + E V R + + + L D I IQ +
Sbjct: 308 TLHVDSAEYSCLKAIVLFSSDRKPEPVPSQRPAVNGYNACG-----LSDATHIENIQEKS 362
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q L +Y+ + YP+QPTRF K+ L LP L+++ + V+E+LFF ++G T I+ I M
Sbjct: 363 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSAQVIEQLFFVRLVG-KTPIETLIRDML 421
Query: 258 KNAG 261
+ G
Sbjct: 422 LSGG 425
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL SW ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 248 LLRVSWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLK 307
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 308 TLHVDSAEYSCLKAIVLFSS 327
>gi|449267650|gb|EMC78568.1| Photoreceptor-specific nuclear receptor [Columba livia]
Length = 406
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 90/178 (50%), Gaps = 27/178 (15%)
Query: 86 LLLAESWRELFILGLAQY---LPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLNI 142
+LL E+W ELF+L Q+ L S L + E + + ++ Q L+ FK L +
Sbjct: 252 ILLEEAWSELFLLCAIQWSMPLESCPLLAVPEPAPGKLLPTALDIRALQETLSRFKALAV 311
Query: 143 DPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHTQIFL 201
DP E+ ++A+ LFK PE+ L+D + +Q +Q+ L
Sbjct: 312 DPTEFACMKAVVLFK----------------------PETRGLKDPEQVENLQDQSQVML 349
Query: 202 NKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKN 259
++ + YP QP RF K+ L+LP L+ I S +E LFFR IG NT ++K + M+KN
Sbjct: 350 GQHNRSHYPGQPVRFGKLLLLLPALRFISSERVELLFFRRTIG-NTPMEKLLCDMFKN 406
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 2 LLLAESWRELFILGLAQY---LPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLNI 58
+LL E+W ELF+L Q+ L S L + E + + ++ Q L+ FK L +
Sbjct: 252 ILLEEAWSELFLLCAIQWSMPLESCPLLAVPEPAPGKLLPTALDIRALQETLSRFKALAV 311
Query: 59 DPYEYDYIRAITLFK 73
DP E+ ++A+ LFK
Sbjct: 312 DPTEFACMKAVVLFK 326
>gi|224062203|ref|XP_002192483.1| PREDICTED: photoreceptor-specific nuclear receptor [Taeniopygia
guttata]
Length = 404
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 88/177 (49%), Gaps = 25/177 (14%)
Query: 86 LLLAESWRELFILGLAQY---LPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLNI 142
+LL E+W ELF+L Q+ L S L + E + + +V Q L FK L +
Sbjct: 250 ILLEEAWSELFLLCAIQWSMPLESCPLLAVPEPTSGKLLPATLDVRALQETLGRFKALAV 309
Query: 143 DPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLN 202
DP E+ ++A+ LFK + R L+D + +Q +Q+ L
Sbjct: 310 DPTEFACMKAVVLFK-------PETRG--------------LKDPEQVENLQDQSQVMLG 348
Query: 203 KYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKN 259
++ + YP QP RF K+ L+LP L+ I S +E LFFR IG NT ++K + M+KN
Sbjct: 349 QHNRSHYPGQPVRFGKLLLLLPALRFISSERVELLFFRRTIG-NTPMEKLLCDMFKN 404
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 2 LLLAESWRELFILGLAQY---LPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLNI 58
+LL E+W ELF+L Q+ L S L + E + + +V Q L FK L +
Sbjct: 250 ILLEEAWSELFLLCAIQWSMPLESCPLLAVPEPTSGKLLPATLDVRALQETLGRFKALAV 309
Query: 59 DPYEYDYIRAITLFK 73
DP E+ ++A+ LFK
Sbjct: 310 DPTEFACMKAVVLFK 324
>gi|432850556|ref|XP_004066809.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Oryzias
latipes]
Length = 431
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 90/181 (49%), Gaps = 30/181 (16%)
Query: 86 LLLAESWRELFILGLAQY------LPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKV 139
+LL E+W ELF+L Q+ P L L +L + + ++ Q + FK
Sbjct: 274 ILLEEAWSELFLLCAIQWSLPLDSCPLLSLPDLCPGMQGKTSYTGLDLRLLQEAFSRFKA 333
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHTQ 198
L +DP E+ ++AI LFK PE+ L+D + +Q +Q
Sbjct: 334 LAVDPTEFACLKAIVLFK----------------------PETRGLKDPEQVENLQDQSQ 371
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 258
+ L ++I + YPSQP RF K+ L+LP L+ + S +E LFF IG NT ++K + M+K
Sbjct: 372 VMLGQHIRSHYPSQPARFGKLLLLLPSLRFVNSERIELLFFHRTIG-NTPMEKLLCDMFK 430
Query: 259 N 259
N
Sbjct: 431 N 431
Score = 43.5 bits (101), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 2 LLLAESWRELFILGLAQY------LPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKV 55
+LL E+W ELF+L Q+ P L L +L + + ++ Q + FK
Sbjct: 274 ILLEEAWSELFLLCAIQWSLPLDSCPLLSLPDLCPGMQGKTSYTGLDLRLLQEAFSRFKA 333
Query: 56 LNIDPYEYDYIRAITLFK 73
L +DP E+ ++AI LFK
Sbjct: 334 LAVDPTEFACLKAIVLFK 351
>gi|145228046|gb|ABP48744.1| COUP-TF/Svp nuclear hormone receptor [Callosobruchus maculatus]
Length = 419
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 31/167 (18%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES--------CKSRHVDIEEEVIRFQSVLNEFK 138
LL W ELF+L +Q L + L+ + C R V + + FQ + + K
Sbjct: 252 LLRLVWSELFVLNASQCSMPLHVAPLIAAAGLHASPMCADRVVQFMDHIRIFQEQVEKLK 311
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF T ++C L DV I +IQ +
Sbjct: 312 ALHVDSAEYSCLKAIVLFTT----------------------DACGLSDVAHIESIQEKS 349
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
Q L +Y + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G
Sbjct: 350 QCALEEYCRSQYPNQPTRFGKLLLRLPSLRTVSSAVIEQLFFVRLVG 396
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------CKSRHVDIEEEVIRFQSVLNEFK 54
LL W ELF+L +Q L + L+ + C R V + + FQ + + K
Sbjct: 252 LLRLVWSELFVLNASQCSMPLHVAPLIAAAGLHASPMCADRVVQFMDHIRIFQEQVEKLK 311
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF T
Sbjct: 312 ALHVDSAEYSCLKAIVLFTT 331
>gi|118788495|ref|XP_316782.3| AGAP000819-PA [Anopheles gambiae str. PEST]
gi|116126135|gb|EAA12047.4| AGAP000819-PA [Anopheles gambiae str. PEST]
Length = 436
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 94/194 (48%), Gaps = 20/194 (10%)
Query: 74 TAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEE-------- 125
T FT +L ESWRE FIL +AQYL ++ +L+ + + + + E
Sbjct: 237 TPFTQLPMADQLVLFEESWREFFILAVAQYLAPINFSQLLIAYEYLNNNRGETGTVSDFL 296
Query: 126 --EVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEV-------KDNRSSSSSDDG 176
EV FQ +L + L +DP EY Y+RAI L+K+ + E + +++S G
Sbjct: 297 VKEVEIFQEILAQLAALRVDPNEYVYLRAIVLYKSEFDAETSISSVSSDGSDVTTASSAG 356
Query: 177 SEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEE 236
S + ++ + A++ + L YI T P R+ + +LP L+++ S +EE
Sbjct: 357 SAK---SIGEIATVRALEESAKEALASYISTCRPGPSNRYRTLLQLLPALRNVSSYTIEE 413
Query: 237 LFFRNIIGHNTTIK 250
LFFR IG +K
Sbjct: 414 LFFRRNIGPAPLLK 427
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 10/85 (11%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEE----------EVIRFQSVLN 51
+L ESWRE FIL +AQYL ++ +L+ + + + + E EV FQ +L
Sbjct: 249 VLFEESWREFFILAVAQYLAPINFSQLLIAYEYLNNNRGETGTVSDFLVKEVEIFQEILA 308
Query: 52 EFKVLNIDPYEYDYIRAITLFKTAF 76
+ L +DP EY Y+RAI L+K+ F
Sbjct: 309 QLAALRVDPNEYVYLRAIVLYKSEF 333
>gi|328696467|ref|XP_003240033.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Acyrthosiphon pisum]
Length = 459
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 94/202 (46%), Gaps = 38/202 (18%)
Query: 65 YIRAITLFKTAFTSRRELAGH---LLLAESWRELFILGLAQYLPSLDLGELVESCKSRH- 120
++R + F+T L+ H LLL ESW+ELF+L LAQ+ DL L+ S K+R
Sbjct: 280 WVRCLAPFQT-------LSKHDQLLLLQESWKELFLLHLAQWSIPWDLSPLLNSEKARER 332
Query: 121 -----VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDD 175
+ E+ Q +L F+ L+ D E ++A+ LF
Sbjct: 333 LPADDTKVNNEMKIIQEILARFRQLSPDGSECGCMKAVILFT------------------ 374
Query: 176 GSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLE 235
E P L D + +Q Q L Y+ Y QPTRF ++ L+LP L+++ +E
Sbjct: 375 -PETPG--LIDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPNLRAVRQATIE 431
Query: 236 ELFFRNIIGHNTTIKKTIWHMY 257
LFF+ IG + I++ + MY
Sbjct: 432 RLFFKETIG-DIPIQRLLGDMY 452
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRH------VDIEEEVIRFQSVLNEFKV 55
LLL ESW+ELF+L LAQ+ DL L+ S K+R + E+ Q +L F+
Sbjct: 297 LLLQESWKELFLLHLAQWSIPWDLSPLLNSEKARERLPADDTKVNNEMKIIQEILARFRQ 356
Query: 56 LNIDPYEYDYIRAITLF 72
L+ D E ++A+ LF
Sbjct: 357 LSPDGSECGCMKAVILF 373
>gi|432850560|ref|XP_004066811.1| PREDICTED: hepatocyte nuclear factor 4-gamma-like [Oryzias latipes]
Length = 385
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 90/181 (49%), Gaps = 30/181 (16%)
Query: 86 LLLAESWRELFILGLAQY------LPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKV 139
+LL E+W ELF+L Q+ P L L +L + + ++ Q + FK
Sbjct: 228 ILLEEAWSELFLLCAIQWSLPLDSCPLLSLPDLCPGMQGKTSYTGLDLRLLQEAFSRFKA 287
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHTQ 198
L +DP E+ ++AI LFK PE+ L+D + +Q +Q
Sbjct: 288 LAVDPTEFACLKAIVLFK----------------------PETRGLKDPEQVENLQDQSQ 325
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 258
+ L ++I + YPSQP RF K+ L+LP L+ + S +E LFF IG NT ++K + M+K
Sbjct: 326 VMLGQHIRSHYPSQPARFGKLLLLLPSLRFVNSERIELLFFHRTIG-NTPMEKLLCDMFK 384
Query: 259 N 259
N
Sbjct: 385 N 385
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 86/175 (49%), Gaps = 30/175 (17%)
Query: 86 LLLAESWRELFILGLAQY------LPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKV 139
+LL E+W ELF+L Q+ P L L +L + + ++ Q + FK
Sbjct: 52 ILLEEAWSELFLLCAIQWSLPLDSCPLLSLPDLCPGMQGKTSYTGLDLRLLQEAFSRFKA 111
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHTQ 198
L +DP E+ ++AI LFK PE+ L+D + +Q +Q
Sbjct: 112 LAVDPTEFACLKAIVLFK----------------------PETRGLKDPEQVENLQDQSQ 149
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTI 253
+ L ++I + YPSQP RF K+ L+LP L+ + S +E LFF IG NT ++K +
Sbjct: 150 VMLGQHIRSHYPSQPARFGKLLLLLPSLRFVNSERIELLFFHRTIG-NTPMEKLL 203
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 2 LLLAESWRELFILGLAQY------LPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKV 55
+LL E+W ELF+L Q+ P L L +L + + ++ Q + FK
Sbjct: 52 ILLEEAWSELFLLCAIQWSLPLDSCPLLSLPDLCPGMQGKTSYTGLDLRLLQEAFSRFKA 111
Query: 56 LNIDPYEYDYIRAITLFK 73
L +DP E+ ++AI LFK
Sbjct: 112 LAVDPTEFACLKAIVLFK 129
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 2 LLLAESWRELFILGLAQY------LPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKV 55
+LL E+W ELF+L Q+ P L L +L + + ++ Q + FK
Sbjct: 228 ILLEEAWSELFLLCAIQWSLPLDSCPLLSLPDLCPGMQGKTSYTGLDLRLLQEAFSRFKA 287
Query: 56 LNIDPYEYDYIRAITLFK 73
L +DP E+ ++AI LFK
Sbjct: 288 LAVDPTEFACLKAIVLFK 305
>gi|431893708|gb|ELK03529.1| Photoreceptor-specific nuclear receptor [Pteropus alecto]
Length = 417
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 92/183 (50%), Gaps = 32/183 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVE--------SCKSRHVDIEEEVIRFQSVLNEF 137
+LL E+W ELF+LG Q+ LD L+ S + R E+ Q + F
Sbjct: 258 ILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGSSQGRLALASAEMRILQETILRF 317
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGH 196
+ L +DP E+ ++A+ LFK PE+ L+D + A+Q
Sbjct: 318 RALAVDPTEFACMKALVLFK----------------------PETRGLKDPEHVEALQDQ 355
Query: 197 TQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
+Q+ L+++ +PSQP RF K+ L+LP L+ I S +E LFFR IG NT ++K + M
Sbjct: 356 SQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITSERVELLFFRKTIG-NTPMEKLLCDM 414
Query: 257 YKN 259
+KN
Sbjct: 415 FKN 417
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVE--------SCKSRHVDIEEEVIRFQSVLNEF 53
+LL E+W ELF+LG Q+ LD L+ S + R E+ Q + F
Sbjct: 258 ILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGSSQGRLALASAEMRILQETILRF 317
Query: 54 KVLNIDPYEYDYIRAITLFK 73
+ L +DP E+ ++A+ LFK
Sbjct: 318 RALAVDPTEFACMKALVLFK 337
>gi|27371232|gb|AAH41421.1| NR2E3 protein [Homo sapiens]
Length = 322
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 91/183 (49%), Gaps = 32/183 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVE--------SCKSRHVDIEEEVIRFQSVLNEF 137
+LL E+W ELF+LG Q+ LD L+ + R E Q ++ F
Sbjct: 163 ILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAQGRLTLASMETRVLQETISRF 222
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGH 196
+ L +DP E+ ++A+ LFK PE+ L+D + A+Q
Sbjct: 223 RALAVDPTEFACMKALVLFK----------------------PETRGLKDPEHVEALQDQ 260
Query: 197 TQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
+Q+ L+++ +PSQP RF K+ L+LP L+ I + +E LFFR IG NT ++K + M
Sbjct: 261 SQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIG-NTPMEKLLCDM 319
Query: 257 YKN 259
+KN
Sbjct: 320 FKN 322
Score = 43.5 bits (101), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVE--------SCKSRHVDIEEEVIRFQSVLNEF 53
+LL E+W ELF+LG Q+ LD L+ + R E Q ++ F
Sbjct: 163 ILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAQGRLTLASMETRVLQETISRF 222
Query: 54 KVLNIDPYEYDYIRAITLFK 73
+ L +DP E+ ++A+ LFK
Sbjct: 223 RALAVDPTEFACMKALVLFK 242
>gi|194760978|ref|XP_001962709.1| GF15588 [Drosophila ananassae]
gi|190616406|gb|EDV31930.1| GF15588 [Drosophila ananassae]
Length = 702
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 89/179 (49%), Gaps = 29/179 (16%)
Query: 85 HLLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR-----FQSVLNEFKV 139
HLLL ESW+ELF+L LAQ+ LDL ++ES R +++E + Q +L F+
Sbjct: 537 HLLLQESWKELFLLNLAQWTIPLDLTPILESPLIRERVLQDEATQTEMKTIQEILCRFRQ 596
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHTQ 198
+ D E ++AI LF PE+ L DV + +Q Q
Sbjct: 597 ITPDGSEVGCMKAIALFA----------------------PETAGLCDVQPVEMLQDQAQ 634
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
L+ ++ YP Q TRF ++ L+LP L++I + +E LFF+ IG N I + + MY
Sbjct: 635 CILSDHVRLRYPRQATRFGRLLLLLPSLRTIRAATIEALFFKETIG-NVPIARLLRDMY 692
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 1 HLLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR-----FQSVLNEFKV 55
HLLL ESW+ELF+L LAQ+ LDL ++ES R +++E + Q +L F+
Sbjct: 537 HLLLQESWKELFLLNLAQWTIPLDLTPILESPLIRERVLQDEATQTEMKTIQEILCRFRQ 596
Query: 56 LNIDPYEYDYIRAITLF 72
+ D E ++AI LF
Sbjct: 597 ITPDGSEVGCMKAIALF 613
>gi|328782478|ref|XP_001121187.2| PREDICTED: protein tailless [Apis mellifera]
Length = 400
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 87/158 (55%), Gaps = 11/158 (6%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLNIDPYE 146
LL SWRELF+L AQ LP+LD L+ + + + EV RF+ L F +++D +E
Sbjct: 231 LLESSWRELFLLAAAQILPTLDPTPLLPP-GPQGLGLAVEVTRFRETLAGFHAMSLDQHE 289
Query: 147 YDYIRAITLFKTVIEDE----VKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLN 202
Y IRAI LFK ++ E + + S+S + GS LRD A+A ++ Q+ L
Sbjct: 290 YACIRAIVLFKAGLDSEPLPSSRSSNGSTSPNTGSR-----LRDAAAVARLRDGAQLALG 344
Query: 203 KYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
+ + RF K+ L+LP L+S+ + +EELFFR
Sbjct: 345 QRLSGASFGA-LRFGKLLLLLPSLRSVSAHAIEELFFR 381
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLNIDPYE 62
LL SWRELF+L AQ LP+LD L+ + + + EV RF+ L F +++D +E
Sbjct: 231 LLESSWRELFLLAAAQILPTLDPTPLLPP-GPQGLGLAVEVTRFRETLAGFHAMSLDQHE 289
Query: 63 YDYIRAITLFKTAFTS 78
Y IRAI LFK S
Sbjct: 290 YACIRAIVLFKAGLDS 305
>gi|7657395|ref|NP_055064.1| photoreceptor-specific nuclear receptor isoform b [Homo sapiens]
gi|8928275|sp|Q9Y5X4.1|NR2E3_HUMAN RecName: Full=Photoreceptor-specific nuclear receptor; AltName:
Full=Nuclear receptor subfamily 2 group E member 3;
AltName: Full=Retina-specific nuclear receptor
gi|4726075|gb|AAD28301.1|AF121129_1 photoreceptor-specific nuclear receptor [Homo sapiens]
gi|7329721|emb|CAB82769.1| photoreceptor-specific nuclear receptor [Homo sapiens]
gi|119598282|gb|EAW77876.1| nuclear receptor subfamily 2, group E, member 3, isoform CRA_a
[Homo sapiens]
gi|216409728|dbj|BAH02301.1| photoreceptor-specific nuclear receptor [Homo sapiens]
Length = 410
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 91/183 (49%), Gaps = 32/183 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVE--------SCKSRHVDIEEEVIRFQSVLNEF 137
+LL E+W ELF+LG Q+ LD L+ + R E Q ++ F
Sbjct: 251 ILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAQGRLTLASMETRVLQETISRF 310
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGH 196
+ L +DP E+ ++A+ LFK PE+ L+D + A+Q
Sbjct: 311 RALAVDPTEFACMKALVLFK----------------------PETRGLKDPEHVEALQDQ 348
Query: 197 TQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
+Q+ L+++ +PSQP RF K+ L+LP L+ I + +E LFFR IG NT ++K + M
Sbjct: 349 SQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIG-NTPMEKLLCDM 407
Query: 257 YKN 259
+KN
Sbjct: 408 FKN 410
Score = 43.5 bits (101), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVE--------SCKSRHVDIEEEVIRFQSVLNEF 53
+LL E+W ELF+LG Q+ LD L+ + R E Q ++ F
Sbjct: 251 ILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAQGRLTLASMETRVLQETISRF 310
Query: 54 KVLNIDPYEYDYIRAITLFK 73
+ L +DP E+ ++A+ LFK
Sbjct: 311 RALAVDPTEFACMKALVLFK 330
>gi|195473765|ref|XP_002089163.1| GE25723 [Drosophila yakuba]
gi|194175264|gb|EDW88875.1| GE25723 [Drosophila yakuba]
Length = 691
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 89/179 (49%), Gaps = 29/179 (16%)
Query: 85 HLLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR-----FQSVLNEFKV 139
HLLL ESW+ELF+L LAQ+ LDL ++ES R +++E + Q +L F+
Sbjct: 527 HLLLQESWKELFLLNLAQWTIPLDLTPILESPLIRERVLQDEATQTEMKTIQEILCRFRQ 586
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHTQ 198
+ D E ++AI LF PE+ L DV + +Q Q
Sbjct: 587 ITPDGSEVGCMKAIALFA----------------------PETAGLCDVQPVEMLQDQAQ 624
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
L+ ++ YP Q TRF ++ L+LP L++I + +E LFF+ IG N I + + MY
Sbjct: 625 CILSDHVRLRYPRQATRFGRLLLLLPSLRTIRAATIEALFFKETIG-NVPIARLLRDMY 682
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 1 HLLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR-----FQSVLNEFKV 55
HLLL ESW+ELF+L LAQ+ LDL ++ES R +++E + Q +L F+
Sbjct: 527 HLLLQESWKELFLLNLAQWTIPLDLTPILESPLIRERVLQDEATQTEMKTIQEILCRFRQ 586
Query: 56 LNIDPYEYDYIRAITLF 72
+ D E ++AI LF
Sbjct: 587 ITPDGSEVGCMKAIALF 603
>gi|345794757|ref|XP_544754.3| PREDICTED: photoreceptor-specific nuclear receptor [Canis lupus
familiaris]
Length = 304
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 89/182 (48%), Gaps = 30/182 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDL--------GELVESCKSRHVDIEEEVIRFQSVLNEF 137
+LL E+W ELF+LG Q+ LD G S + R E Q ++ F
Sbjct: 145 ILLEEAWSELFLLGAIQWSLPLDSCPLLAAPEGPAAGSSQGRLALASAESRILQETISRF 204
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ L +DP E+ ++A+ LF + R L+D + A+Q +
Sbjct: 205 RALAVDPTEFACMKALVLF-------TPETRG--------------LKDPEHVEALQDQS 243
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ L+++ +PSQP RF K+ L+LP L+ I S +E LFFR IG NT ++K + M+
Sbjct: 244 QVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITSERVELLFFRKTIG-NTPMEKLLCDMF 302
Query: 258 KN 259
KN
Sbjct: 303 KN 304
Score = 43.9 bits (102), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 2 LLLAESWRELFILGLAQYLPSLDL--------GELVESCKSRHVDIEEEVIRFQSVLNEF 53
+LL E+W ELF+LG Q+ LD G S + R E Q ++ F
Sbjct: 145 ILLEEAWSELFLLGAIQWSLPLDSCPLLAAPEGPAAGSSQGRLALASAESRILQETISRF 204
Query: 54 KVLNIDPYEYDYIRAITLF 72
+ L +DP E+ ++A+ LF
Sbjct: 205 RALAVDPTEFACMKALVLF 223
>gi|4160012|gb|AAD05225.1| dissatisfaction [Drosophila melanogaster]
Length = 693
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 89/179 (49%), Gaps = 29/179 (16%)
Query: 85 HLLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR-----FQSVLNEFKV 139
HLLL ESW+ELF+L LAQ+ LDL ++ES R +++E + Q +L F+
Sbjct: 529 HLLLQESWKELFLLNLAQWTIPLDLTPILESPLIRERVLQDEATQTEMKTIQEILCRFRQ 588
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHTQ 198
+ D E ++AI LF PE+ L DV + +Q Q
Sbjct: 589 ITPDGSEVGCMKAIALFA----------------------PETAGLCDVQPVEMLQDQAQ 626
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
L+ ++ YP Q TRF ++ L+LP L++I + +E LFF+ IG N I + + MY
Sbjct: 627 CILSDHVRLRYPRQATRFGRLLLLLPSLRTIRAATIEALFFKETIG-NVPIARLLRDMY 684
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 1 HLLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR-----FQSVLNEFKV 55
HLLL ESW+ELF+L LAQ+ LDL ++ES R +++E + Q +L F+
Sbjct: 529 HLLLQESWKELFLLNLAQWTIPLDLTPILESPLIRERVLQDEATQTEMKTIQEILCRFRQ 588
Query: 56 LNIDPYEYDYIRAITLF 72
+ D E ++AI LF
Sbjct: 589 ITPDGSEVGCMKAIALF 605
>gi|195443622|ref|XP_002069499.1| GK11542 [Drosophila willistoni]
gi|194165584|gb|EDW80485.1| GK11542 [Drosophila willistoni]
Length = 835
Score = 81.6 bits (200), Expect = 3e-13, Method: Composition-based stats.
Identities = 57/179 (31%), Positives = 86/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL W ELF+L +Q L + L+ + R V + + FQ + + K
Sbjct: 371 LLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLK 430
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF T ++C L DV I ++Q +
Sbjct: 431 ALHVDSAEYSCLKAIVLFTT----------------------DACGLSDVTHIESLQEKS 468
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y T YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 469 QCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIETLIRDM 526
Score = 37.0 bits (84), Expect = 7.6, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL W ELF+L +Q L + L+ + R V + + FQ + + K
Sbjct: 371 LLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLK 430
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF T
Sbjct: 431 ALHVDSAEYSCLKAIVLFTT 450
>gi|195396200|ref|XP_002056720.1| GJ11090 [Drosophila virilis]
gi|194143429|gb|EDW59832.1| GJ11090 [Drosophila virilis]
Length = 787
Score = 81.6 bits (200), Expect = 3e-13, Method: Composition-based stats.
Identities = 57/179 (31%), Positives = 86/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL W ELF+L +Q L + L+ + R V + + FQ + + K
Sbjct: 368 LLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLK 427
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF T ++C L DV I ++Q +
Sbjct: 428 ALHVDSAEYSCLKAIVLFTT----------------------DACGLSDVTHIESLQEKS 465
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y T YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 466 QCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIETLIRDM 523
Score = 37.0 bits (84), Expect = 7.6, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL W ELF+L +Q L + L+ + R V + + FQ + + K
Sbjct: 368 LLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLK 427
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF T
Sbjct: 428 ALHVDSAEYSCLKAIVLFTT 447
>gi|195111960|ref|XP_002000544.1| GI10282 [Drosophila mojavensis]
gi|193917138|gb|EDW16005.1| GI10282 [Drosophila mojavensis]
Length = 812
Score = 81.6 bits (200), Expect = 3e-13, Method: Composition-based stats.
Identities = 57/179 (31%), Positives = 86/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL W ELF+L +Q L + L+ + R V + + FQ + + K
Sbjct: 369 LLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLK 428
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF T ++C L DV I ++Q +
Sbjct: 429 ALHVDSAEYSCLKAIVLFTT----------------------DACGLSDVTHIESLQEKS 466
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y T YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 467 QCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIETLIRDM 524
Score = 37.0 bits (84), Expect = 7.6, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL W ELF+L +Q L + L+ + R V + + FQ + + K
Sbjct: 369 LLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLK 428
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF T
Sbjct: 429 ALHVDSAEYSCLKAIVLFTT 448
>gi|194741798|ref|XP_001953374.1| GF17240 [Drosophila ananassae]
gi|190626433|gb|EDV41957.1| GF17240 [Drosophila ananassae]
Length = 826
Score = 81.6 bits (200), Expect = 3e-13, Method: Composition-based stats.
Identities = 57/179 (31%), Positives = 86/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL W ELF+L +Q L + L+ + R V + + FQ + + K
Sbjct: 378 LLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLK 437
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF T ++C L DV I ++Q +
Sbjct: 438 ALHVDSAEYSCLKAIVLFTT----------------------DACGLSDVTHIESLQEKS 475
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y T YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 476 QCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIETLIRDM 533
Score = 37.0 bits (84), Expect = 7.6, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL W ELF+L +Q L + L+ + R V + + FQ + + K
Sbjct: 378 LLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLK 437
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF T
Sbjct: 438 ALHVDSAEYSCLKAIVLFTT 457
>gi|17137164|ref|NP_477140.1| dissatisfaction, isoform A [Drosophila melanogaster]
gi|442626233|ref|NP_001260109.1| dissatisfaction, isoform B [Drosophila melanogaster]
gi|7297033|gb|AAF52303.1| dissatisfaction, isoform A [Drosophila melanogaster]
gi|440213405|gb|AGB92645.1| dissatisfaction, isoform B [Drosophila melanogaster]
Length = 691
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 89/179 (49%), Gaps = 29/179 (16%)
Query: 85 HLLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR-----FQSVLNEFKV 139
HLLL ESW+ELF+L LAQ+ LDL ++ES R +++E + Q +L F+
Sbjct: 527 HLLLQESWKELFLLNLAQWTIPLDLTPILESPLIRERVLQDEATQTEMKTIQEILCRFRQ 586
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHTQ 198
+ D E ++AI LF PE+ L DV + +Q Q
Sbjct: 587 ITPDGSEVGCMKAIALFA----------------------PETAGLCDVQPVEMLQDQAQ 624
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
L+ ++ YP Q TRF ++ L+LP L++I + +E LFF+ IG N I + + MY
Sbjct: 625 CILSDHVRLRYPRQATRFGRLLLLLPSLRTIRAATIEALFFKETIG-NVPIARLLRDMY 682
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 1 HLLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR-----FQSVLNEFKV 55
HLLL ESW+ELF+L LAQ+ LDL ++ES R +++E + Q +L F+
Sbjct: 527 HLLLQESWKELFLLNLAQWTIPLDLTPILESPLIRERVLQDEATQTEMKTIQEILCRFRQ 586
Query: 56 LNIDPYEYDYIRAITLF 72
+ D E ++AI LF
Sbjct: 587 ITPDGSEVGCMKAIALF 603
>gi|242004528|ref|XP_002423135.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212506081|gb|EEB10397.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 467
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 88/183 (48%), Gaps = 33/183 (18%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGEL---------VESCKSRHVDIEEEVIRFQSVLNE 136
+LL E W ELF+L Q+ ++ L V + KS + V+ +L
Sbjct: 309 ILLEECWSELFLLNAIQWCLPVESSPLFSVNEHAATVPNGKSSQTAADIRVL--NDMLLR 366
Query: 137 FKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGH 196
+K + +DP E+ ++AI LFK+ L+D + + +Q
Sbjct: 367 YKAVGVDPAEFACLKAIVLFKSETRG---------------------LKDPLQVENLQDQ 405
Query: 197 TQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q+ L ++ +P+QP RF ++ L++P LK +P+ +E +FF+ IG NT ++K + M
Sbjct: 406 AQVMLGQHARGQHPTQPARFGRLLLMIPLLKHVPTQRVEHIFFQRTIG-NTPMEKVLCDM 464
Query: 257 YKN 259
YKN
Sbjct: 465 YKN 467
>gi|194856940|ref|XP_001968860.1| GG25103 [Drosophila erecta]
gi|190660727|gb|EDV57919.1| GG25103 [Drosophila erecta]
Length = 693
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 89/179 (49%), Gaps = 29/179 (16%)
Query: 85 HLLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR-----FQSVLNEFKV 139
HLLL ESW+ELF+L LAQ+ LDL ++ES R +++E + Q +L F+
Sbjct: 529 HLLLQESWKELFLLNLAQWTIPLDLTPILESPLIRERVLQDEATQTEMKTIQEILCRFRQ 588
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHTQ 198
+ D E ++AI LF PE+ L DV + +Q Q
Sbjct: 589 ITPDGSEVGCMKAIALFA----------------------PETAGLCDVQPVEMLQDQAQ 626
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
L+ ++ YP Q TRF ++ L+LP L++I + +E LFF+ IG N I + + MY
Sbjct: 627 CILSDHVRLRYPRQATRFGRLLLLLPSLRTIRAATIEALFFKETIG-NVPIARLLRDMY 684
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 1 HLLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR-----FQSVLNEFKV 55
HLLL ESW+ELF+L LAQ+ LDL ++ES R +++E + Q +L F+
Sbjct: 529 HLLLQESWKELFLLNLAQWTIPLDLTPILESPLIRERVLQDEATQTEMKTIQEILCRFRQ 588
Query: 56 LNIDPYEYDYIRAITLF 72
+ D E ++AI LF
Sbjct: 589 ITPDGSEVGCMKAIALF 605
>gi|260834489|ref|XP_002612243.1| hypothetical protein BRAFLDRAFT_155937 [Branchiostoma floridae]
gi|229297618|gb|EEN68252.1| hypothetical protein BRAFLDRAFT_155937 [Branchiostoma floridae]
Length = 375
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 118/264 (44%), Gaps = 27/264 (10%)
Query: 14 LGLAQYLP--SLDLGELVESCKS--RHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAI 69
LG YLP +L L + C + +H I + V R+ + + +P + R +
Sbjct: 121 LGSPAYLPYRALVPVTLTDGCAADFKHSTIFQPVPRYPVEVLQRWTCKAEPVQEAAARLL 180
Query: 70 TLFK------TAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELV--------ES 115
+ AF + HLLL SW+E+F+LGLAQ+ +D +L +S
Sbjct: 181 NMTLHWLRSIPAFLTLSSHDQHLLLQSSWQEMFLLGLAQWALPMDPKQLAVEAGVPPDQS 240
Query: 116 CKSRHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDD 175
R ++V Q L++F L +D EY ++ I LFKT E + +D
Sbjct: 241 PADRLQTFLQQVQMLQETLHKFHQLQVDAVEYACLKGIVLFKT---GETISQTTCCFTDV 297
Query: 176 GSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLE 235
S LRD +A +Q TQ+ + +I P QP RF K+ L+L L+ + LE
Sbjct: 298 QS------LRDPGTVAVLQDQTQLSFSHHIEMHKPGQPFRFGKLLLLLSSLREVQRSSLE 351
Query: 236 ELFFRNIIGHNTTIKKTIWHMYKN 259
+FF + ++ + + MYK+
Sbjct: 352 SVFFTKTMTGGVSMDQLVLDMYKS 375
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Query: 1 HLLLAESWRELFILGLAQYLPSLDLGELV--------ESCKSRHVDIEEEVIRFQSVLNE 52
HLLL SW+E+F+LGLAQ+ +D +L +S R ++V Q L++
Sbjct: 202 HLLLQSSWQEMFLLGLAQWALPMDPKQLAVEAGVPPDQSPADRLQTFLQQVQMLQETLHK 261
Query: 53 FKVLNIDPYEYDYIRAITLFKTAFT 77
F L +D EY ++ I LFKT T
Sbjct: 262 FHQLQVDAVEYACLKGIVLFKTGET 286
>gi|403276151|ref|XP_003929774.1| PREDICTED: photoreceptor-specific nuclear receptor [Saimiri
boliviensis boliviensis]
Length = 552
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 91/183 (49%), Gaps = 32/183 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVE--------SCKSRHVDIEEEVIRFQSVLNEF 137
+LL E+W ELF+LG Q+ LD L+ + R E Q ++ F
Sbjct: 393 ILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAQGRLTLASMETRILQETISRF 452
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGH 196
+ L +DP E+ ++A+ LFK PE+ L+D + A+Q
Sbjct: 453 RALAVDPTEFACMKALVLFK----------------------PETRGLKDPEHVEALQDQ 490
Query: 197 TQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
+Q+ L+++ +PSQP RF K+ L+LP L+ I + +E LFFR IG NT ++K + M
Sbjct: 491 SQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIG-NTPMEKLLCDM 549
Query: 257 YKN 259
+KN
Sbjct: 550 FKN 552
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVE--------SCKSRHVDIEEEVIRFQSVLNEF 53
+LL E+W ELF+LG Q+ LD L+ + R E Q ++ F
Sbjct: 393 ILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAQGRLTLASMETRILQETISRF 452
Query: 54 KVLNIDPYEYDYIRAITLFK 73
+ L +DP E+ ++A+ LFK
Sbjct: 453 RALAVDPTEFACMKALVLFK 472
>gi|390341307|ref|XP_794533.3| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Strongylocentrotus purpuratus]
Length = 410
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 90/181 (49%), Gaps = 30/181 (16%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSRH--------VDIEEEVIRFQSVLNEFK 138
LL E WRELFILG AQ+ ++D L+ S + I E+ Q ++ +F+
Sbjct: 248 LLEEGWRELFILGAAQWQMTVDGPGLMASAGMKPDTTPAEKLAAISSELRVLQELIAKFR 307
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
LN+D E+ ++ I +FKT I S +++ ++ +Q +Q
Sbjct: 308 QLNVDDTEFACLKGIVIFKTDI---------------------SGIKETSSVVTLQDQSQ 346
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 258
+ L+KYI + +QP RF K+ L+LP +++I LE++FF +G +T + +YK
Sbjct: 347 LALSKYITVRHQTQPYRFGKLLLLLPSVRAIRPTTLEQIFFWKAVG-STPFHTLLTDLYK 405
Query: 259 N 259
Sbjct: 406 K 406
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 12/110 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESCKSRH--------VDIEEEVIRFQSVLNEFK 54
LL E WRELFILG AQ+ ++D L+ S + I E+ Q ++ +F+
Sbjct: 248 LLEEGWRELFILGAAQWQMTVDGPGLMASAGMKPDTTPAEKLAAISSELRVLQELIAKFR 307
Query: 55 VLNIDPYEYDYIRAITLFKTAFTSRRELAGHLLLAESWRELFILGLAQYL 104
LN+D E+ ++ I +FKT + +E + + L + + L L++Y+
Sbjct: 308 QLNVDDTEFACLKGIVIFKTDISGIKETSSVVTLQDQSQ----LALSKYI 353
>gi|115679027|ref|XP_792757.2| PREDICTED: nuclear receptor subfamily 2 group E member 1-like,
partial [Strongylocentrotus purpuratus]
Length = 297
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 90/181 (49%), Gaps = 30/181 (16%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSRH--------VDIEEEVIRFQSVLNEFK 138
LL E WRELFILG AQ+ ++D L+ S + I E+ Q ++ +F+
Sbjct: 135 LLEEGWRELFILGAAQWQMTVDGPGLMASAGMKPDTTPAEKLAAISSELRVLQELIAKFR 194
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
LN+D E+ ++ I +FKT I S +++ ++ +Q +Q
Sbjct: 195 QLNVDDTEFACLKGIVIFKTDI---------------------SGIKETSSVVTLQDQSQ 233
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 258
+ L+KYI + +QP RF K+ L+LP +++I LE++FF +G +T + +YK
Sbjct: 234 LALSKYITVRHQTQPYRFGKLLLLLPSVRAIRPTTLEQIFFWKAVG-STPFHTLLTDLYK 292
Query: 259 N 259
Sbjct: 293 K 293
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 12/110 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESCKSRH--------VDIEEEVIRFQSVLNEFK 54
LL E WRELFILG AQ+ ++D L+ S + I E+ Q ++ +F+
Sbjct: 135 LLEEGWRELFILGAAQWQMTVDGPGLMASAGMKPDTTPAEKLAAISSELRVLQELIAKFR 194
Query: 55 VLNIDPYEYDYIRAITLFKTAFTSRRELAGHLLLAESWRELFILGLAQYL 104
LN+D E+ ++ I +FKT + +E + + L + + L L++Y+
Sbjct: 195 QLNVDDTEFACLKGIVIFKTDISGIKETSSVVTLQDQSQ----LALSKYI 240
>gi|114657922|ref|XP_001175020.1| PREDICTED: photoreceptor-specific nuclear receptor isoform 1 [Pan
troglodytes]
Length = 322
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 94/185 (50%), Gaps = 36/185 (19%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHV----------DIEEEVIRFQSVLN 135
+LL E+W ELF+LG Q+ LD L+ ++ +E V+R ++
Sbjct: 163 ILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAQGRLTLASMETRVLR--ETIS 220
Query: 136 EFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQ 194
F+ L +DP E+ ++A+ LFK PE+ L+D + A+Q
Sbjct: 221 RFRALAVDPTEFACMKALVLFK----------------------PETRGLKDPEHVEALQ 258
Query: 195 GHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIW 254
+Q+ L+++ +PSQP RF K+ L+LP L+ I + +E LFFR IG NT ++K +
Sbjct: 259 DQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIG-NTPMEKLLC 317
Query: 255 HMYKN 259
M+KN
Sbjct: 318 DMFKN 322
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 12/82 (14%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRH----------VDIEEEVIRFQSVLN 51
+LL E+W ELF+LG Q+ LD L+ ++ +E V+R ++
Sbjct: 163 ILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAQGRLTLASMETRVLR--ETIS 220
Query: 52 EFKVLNIDPYEYDYIRAITLFK 73
F+ L +DP E+ ++A+ LFK
Sbjct: 221 RFRALAVDPTEFACMKALVLFK 242
>gi|355778151|gb|EHH63187.1| hypothetical protein EGM_16101, partial [Macaca fascicularis]
Length = 302
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 94/185 (50%), Gaps = 36/185 (19%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHV----------DIEEEVIRFQSVLN 135
+LL E+W ELF+LG Q+ LD L+ ++ +E V+R ++
Sbjct: 143 ILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAQGRLTLASMETRVLR--ETIS 200
Query: 136 EFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQ 194
F+ L +DP E+ ++A+ LFK PE+ L+D + A+Q
Sbjct: 201 RFRALAVDPTEFACMKALVLFK----------------------PETRGLKDPEHVEALQ 238
Query: 195 GHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIW 254
+Q+ L+++ +PSQP RF K+ L+LP L+ I + +E LFFR IG NT ++K +
Sbjct: 239 DQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIG-NTPMEKLLC 297
Query: 255 HMYKN 259
M+KN
Sbjct: 298 DMFKN 302
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 12/82 (14%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRH----------VDIEEEVIRFQSVLN 51
+LL E+W ELF+LG Q+ LD L+ ++ +E V+R ++
Sbjct: 143 ILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAQGRLTLASMETRVLR--ETIS 200
Query: 52 EFKVLNIDPYEYDYIRAITLFK 73
F+ L +DP E+ ++A+ LFK
Sbjct: 201 RFRALAVDPTEFACMKALVLFK 222
>gi|397495510|ref|XP_003818595.1| PREDICTED: photoreceptor-specific nuclear receptor isoform 2 [Pan
paniscus]
Length = 322
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 94/185 (50%), Gaps = 36/185 (19%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHV----------DIEEEVIRFQSVLN 135
+LL E+W ELF+LG Q+ LD L+ ++ +E V+R ++
Sbjct: 163 ILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAQGRLTLASMETRVLR--ETIS 220
Query: 136 EFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQ 194
F+ L +DP E+ ++A+ LFK PE+ L+D + A+Q
Sbjct: 221 RFRALAVDPTEFACMKALVLFK----------------------PETRGLKDPEHVEALQ 258
Query: 195 GHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIW 254
+Q+ L+++ +PSQP RF K+ L+LP L+ I + +E LFFR IG NT ++K +
Sbjct: 259 DQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIG-NTPMEKLLC 317
Query: 255 HMYKN 259
M+KN
Sbjct: 318 DMFKN 322
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 12/82 (14%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRH----------VDIEEEVIRFQSVLN 51
+LL E+W ELF+LG Q+ LD L+ ++ +E V+R ++
Sbjct: 163 ILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAQGRLTLASMETRVLR--ETIS 220
Query: 52 EFKVLNIDPYEYDYIRAITLFK 73
F+ L +DP E+ ++A+ LFK
Sbjct: 221 RFRALAVDPTEFACMKALVLFK 242
>gi|297697018|ref|XP_002825669.1| PREDICTED: photoreceptor-specific nuclear receptor [Pongo abelii]
Length = 614
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 94/185 (50%), Gaps = 36/185 (19%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD----------IEEEVIRFQSVLN 135
+LL E+W ELF+LG Q+ LD L+ ++ +E V+R ++
Sbjct: 455 ILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAQGRLTLASMETRVLR--ETIS 512
Query: 136 EFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQ 194
F+ L +DP E+ ++A+ LFK PE+ L+D + A+Q
Sbjct: 513 RFRALAVDPTEFACMKALVLFK----------------------PETRGLKDPEHVEALQ 550
Query: 195 GHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIW 254
+Q+ L+++ +PSQP RF K+ L+LP L+ I + +E LFFR IG NT ++K +
Sbjct: 551 DQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIG-NTPMEKLLC 609
Query: 255 HMYKN 259
M+KN
Sbjct: 610 DMFKN 614
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 12/82 (14%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD----------IEEEVIRFQSVLN 51
+LL E+W ELF+LG Q+ LD L+ ++ +E V+R ++
Sbjct: 455 ILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAQGRLTLASMETRVLR--ETIS 512
Query: 52 EFKVLNIDPYEYDYIRAITLFK 73
F+ L +DP E+ ++A+ LFK
Sbjct: 513 RFRALAVDPTEFACMKALVLFK 534
>gi|355692849|gb|EHH27452.1| Retina-specific nuclear receptor, partial [Macaca mulatta]
Length = 411
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 94/185 (50%), Gaps = 36/185 (19%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHV----------DIEEEVIRFQSVLN 135
+LL E+W ELF+LG Q+ LD L+ ++ +E V+R ++
Sbjct: 252 ILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAQGRLTLASMETRVLR--ETIS 309
Query: 136 EFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQ 194
F+ L +DP E+ ++A+ LFK PE+ L+D + A+Q
Sbjct: 310 RFRALAVDPTEFACMKALVLFK----------------------PETRGLKDPEHVEALQ 347
Query: 195 GHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIW 254
+Q+ L+++ +PSQP RF K+ L+LP L+ I + +E LFFR IG NT ++K +
Sbjct: 348 DQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIG-NTPMEKLLC 406
Query: 255 HMYKN 259
M+KN
Sbjct: 407 DMFKN 411
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 12/82 (14%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRH----------VDIEEEVIRFQSVLN 51
+LL E+W ELF+LG Q+ LD L+ ++ +E V+R ++
Sbjct: 252 ILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAQGRLTLASMETRVLR--ETIS 309
Query: 52 EFKVLNIDPYEYDYIRAITLFK 73
F+ L +DP E+ ++A+ LFK
Sbjct: 310 RFRALAVDPTEFACMKALVLFK 331
>gi|114657918|ref|XP_001175025.1| PREDICTED: photoreceptor-specific nuclear receptor isoform 3 [Pan
troglodytes]
Length = 402
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 94/185 (50%), Gaps = 36/185 (19%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHV----------DIEEEVIRFQSVLN 135
+LL E+W ELF+LG Q+ LD L+ ++ +E V+R ++
Sbjct: 243 ILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAQGRLTLASMETRVLR--ETIS 300
Query: 136 EFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQ 194
F+ L +DP E+ ++A+ LFK PE+ L+D + A+Q
Sbjct: 301 RFRALAVDPTEFACMKALVLFK----------------------PETRGLKDPEHVEALQ 338
Query: 195 GHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIW 254
+Q+ L+++ +PSQP RF K+ L+LP L+ I + +E LFFR IG NT ++K +
Sbjct: 339 DQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIG-NTPMEKLLC 397
Query: 255 HMYKN 259
M+KN
Sbjct: 398 DMFKN 402
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 12/82 (14%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRH----------VDIEEEVIRFQSVLN 51
+LL E+W ELF+LG Q+ LD L+ ++ +E V+R ++
Sbjct: 243 ILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAQGRLTLASMETRVLR--ETIS 300
Query: 52 EFKVLNIDPYEYDYIRAITLFK 73
F+ L +DP E+ ++A+ LFK
Sbjct: 301 RFRALAVDPTEFACMKALVLFK 322
>gi|195030592|ref|XP_001988152.1| GH11011 [Drosophila grimshawi]
gi|193904152|gb|EDW03019.1| GH11011 [Drosophila grimshawi]
Length = 719
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 89/179 (49%), Gaps = 29/179 (16%)
Query: 85 HLLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIRF-----QSVLNEFKV 139
HLLL ESW+ELF+L LAQ+ LDL ++ES + +++E + Q +L F+
Sbjct: 555 HLLLQESWKELFLLNLAQWTIPLDLTPILESPLIKERVLQDEATQIEMKTIQEILCRFRQ 614
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHTQ 198
+ D E ++AI LF PE+ L DV + +Q Q
Sbjct: 615 ITPDGSEVGCMKAIALFA----------------------PETAGLCDVQPVEMLQDQAQ 652
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
L+ ++ YP Q TRF ++ L+LP L++I + +E LFF+ IG N I + + MY
Sbjct: 653 CILSDHVRLRYPRQATRFGRLLLLLPSLRTIRAATIEALFFKETIG-NVPIARLLRDMY 710
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 1 HLLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR-----FQSVLNEFKV 55
HLLL ESW+ELF+L LAQ+ LDL ++ES + +++E + Q +L F+
Sbjct: 555 HLLLQESWKELFLLNLAQWTIPLDLTPILESPLIKERVLQDEATQIEMKTIQEILCRFRQ 614
Query: 56 LNIDPYEYDYIRAITLF 72
+ D E ++AI LF
Sbjct: 615 ITPDGSEVGCMKAIALF 631
>gi|296213607|ref|XP_002753344.1| PREDICTED: photoreceptor-specific nuclear receptor [Callithrix
jacchus]
Length = 368
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 90/183 (49%), Gaps = 32/183 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVE--------SCKSRHVDIEEEVIRFQSVLNEF 137
+LL E+W ELF+LG Q+ LD L+ R E Q ++ F
Sbjct: 209 ILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAPGRLTLASMETRVLQETISRF 268
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGH 196
+ L +DP E+ ++A+ LFK PE+ L+D + A+Q
Sbjct: 269 RALAVDPTEFACMKALVLFK----------------------PETRGLKDPEHVEALQDQ 306
Query: 197 TQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
+Q+ L+++ +PSQP RF K+ L+LP L+ I + +E LFFR IG NT ++K + M
Sbjct: 307 SQVMLSQHSKAHHPSQPMRFGKLLLLLPSLRFITAERIELLFFRKTIG-NTPMEKLLCDM 365
Query: 257 YKN 259
+KN
Sbjct: 366 FKN 368
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVE--------SCKSRHVDIEEEVIRFQSVLNEF 53
+LL E+W ELF+LG Q+ LD L+ R E Q ++ F
Sbjct: 209 ILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAPGRLTLASMETRVLQETISRF 268
Query: 54 KVLNIDPYEYDYIRAITLFK 73
+ L +DP E+ ++A+ LFK
Sbjct: 269 RALAVDPTEFACMKALVLFK 288
>gi|195385346|ref|XP_002051367.1| GJ15408 [Drosophila virilis]
gi|194147824|gb|EDW63522.1| GJ15408 [Drosophila virilis]
Length = 726
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 89/179 (49%), Gaps = 29/179 (16%)
Query: 85 HLLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIRF-----QSVLNEFKV 139
HLLL ESW+ELF+L LAQ+ LDL ++ES + +++E + Q +L F+
Sbjct: 562 HLLLQESWKELFLLNLAQWTIPLDLTPILESPLIKERVLQDEATQMEMKTIQEILCRFRQ 621
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHTQ 198
+ D E ++AI LF PE+ L DV + +Q Q
Sbjct: 622 ITPDGSEVGCMKAIALFA----------------------PETAGLCDVQPVEMLQDQAQ 659
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
L+ ++ YP Q TRF ++ L+LP L++I + +E LFF+ IG N I + + MY
Sbjct: 660 CILSDHVRLRYPRQATRFGRLLLLLPSLRTIRAATIEALFFKETIG-NVPIARLLRDMY 717
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 1 HLLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIRF-----QSVLNEFKV 55
HLLL ESW+ELF+L LAQ+ LDL ++ES + +++E + Q +L F+
Sbjct: 562 HLLLQESWKELFLLNLAQWTIPLDLTPILESPLIKERVLQDEATQMEMKTIQEILCRFRQ 621
Query: 56 LNIDPYEYDYIRAITLF 72
+ D E ++AI LF
Sbjct: 622 ITPDGSEVGCMKAIALF 638
>gi|397495508|ref|XP_003818594.1| PREDICTED: photoreceptor-specific nuclear receptor isoform 1 [Pan
paniscus]
Length = 402
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 94/185 (50%), Gaps = 36/185 (19%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHV----------DIEEEVIRFQSVLN 135
+LL E+W ELF+LG Q+ LD L+ ++ +E V+R ++
Sbjct: 243 ILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAQGRLTLASMETRVLR--ETIS 300
Query: 136 EFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQ 194
F+ L +DP E+ ++A+ LFK PE+ L+D + A+Q
Sbjct: 301 RFRALAVDPTEFACMKALVLFK----------------------PETRGLKDPEHVEALQ 338
Query: 195 GHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIW 254
+Q+ L+++ +PSQP RF K+ L+LP L+ I + +E LFFR IG NT ++K +
Sbjct: 339 DQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIG-NTPMEKLLC 397
Query: 255 HMYKN 259
M+KN
Sbjct: 398 DMFKN 402
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 12/82 (14%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRH----------VDIEEEVIRFQSVLN 51
+LL E+W ELF+LG Q+ LD L+ ++ +E V+R ++
Sbjct: 243 ILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAQGRLTLASMETRVLR--ETIS 300
Query: 52 EFKVLNIDPYEYDYIRAITLFK 73
F+ L +DP E+ ++A+ LFK
Sbjct: 301 RFRALAVDPTEFACMKALVLFK 322
>gi|195116317|ref|XP_002002702.1| GI17531 [Drosophila mojavensis]
gi|193913277|gb|EDW12144.1| GI17531 [Drosophila mojavensis]
Length = 736
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 89/179 (49%), Gaps = 29/179 (16%)
Query: 85 HLLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIRF-----QSVLNEFKV 139
HLLL ESW+ELF+L LAQ+ LDL ++ES + +++E + Q +L F+
Sbjct: 572 HLLLQESWKELFLLNLAQWTIPLDLTPILESPLIKERVLQDEATQMEMKTIQEILCRFRQ 631
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHTQ 198
+ D E ++AI LF PE+ L DV + +Q Q
Sbjct: 632 ITPDGSEVGCMKAIALFA----------------------PETAGLCDVQPVEMLQDQAQ 669
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
L+ ++ YP Q TRF ++ L+LP L++I + +E LFF+ IG N I + + MY
Sbjct: 670 CILSDHVRLRYPRQATRFGRLLLLLPSLRTIRAATIEALFFKETIG-NVPIARLLRDMY 727
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 1 HLLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIRF-----QSVLNEFKV 55
HLLL ESW+ELF+L LAQ+ LDL ++ES + +++E + Q +L F+
Sbjct: 572 HLLLQESWKELFLLNLAQWTIPLDLTPILESPLIKERVLQDEATQMEMKTIQEILCRFRQ 631
Query: 56 LNIDPYEYDYIRAITLF 72
+ D E ++AI LF
Sbjct: 632 ITPDGSEVGCMKAIALF 648
>gi|109081780|ref|XP_001089693.1| PREDICTED: photoreceptor-specific nuclear receptor [Macaca mulatta]
Length = 448
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 94/185 (50%), Gaps = 36/185 (19%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHV----------DIEEEVIRFQSVLN 135
+LL E+W ELF+LG Q+ LD L+ ++ +E V+R ++
Sbjct: 289 ILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASTAGGAQGRLTLASMETRVLR--ETIS 346
Query: 136 EFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQ 194
F+ L +DP E+ ++A+ LFK PE+ L+D + A+Q
Sbjct: 347 RFRALAVDPTEFACMKALVLFK----------------------PETRGLKDPEHVEALQ 384
Query: 195 GHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIW 254
+Q+ L+++ +PSQP RF K+ L+LP L+ I + +E LFFR IG NT ++K +
Sbjct: 385 DQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIG-NTPMEKLLC 443
Query: 255 HMYKN 259
M+KN
Sbjct: 444 DMFKN 448
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 12/82 (14%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRH----------VDIEEEVIRFQSVLN 51
+LL E+W ELF+LG Q+ LD L+ ++ +E V+R ++
Sbjct: 289 ILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASTAGGAQGRLTLASMETRVLR--ETIS 346
Query: 52 EFKVLNIDPYEYDYIRAITLFK 73
F+ L +DP E+ ++A+ LFK
Sbjct: 347 RFRALAVDPTEFACMKALVLFK 368
>gi|426379592|ref|XP_004056476.1| PREDICTED: photoreceptor-specific nuclear receptor [Gorilla gorilla
gorilla]
Length = 402
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 94/185 (50%), Gaps = 36/185 (19%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHV----------DIEEEVIRFQSVLN 135
+LL E+W ELF+LG Q+ LD L+ ++ +E V+R ++
Sbjct: 243 ILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAQGRLTLASMETRVLR--ETIS 300
Query: 136 EFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQ 194
F+ L +DP E+ ++A+ LFK PE+ L+D + A+Q
Sbjct: 301 RFRALAVDPTEFACMKALVLFK----------------------PETRGLKDPEHVEALQ 338
Query: 195 GHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIW 254
+Q+ L+++ +PSQP RF K+ L+LP L+ I + +E LFFR IG NT ++K +
Sbjct: 339 DQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIG-NTPMEKLLC 397
Query: 255 HMYKN 259
M+KN
Sbjct: 398 DMFKN 402
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 12/82 (14%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRH----------VDIEEEVIRFQSVLN 51
+LL E+W ELF+LG Q+ LD L+ ++ +E V+R ++
Sbjct: 243 ILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAQGRLTLASMETRVLR--ETIS 300
Query: 52 EFKVLNIDPYEYDYIRAITLFK 73
F+ L +DP E+ ++A+ LFK
Sbjct: 301 RFRALAVDPTEFACMKALVLFK 322
>gi|263506139|sp|Q9TTF0.2|NR2E3_BOVIN RecName: Full=Photoreceptor-specific nuclear receptor; AltName:
Full=Nuclear receptor subfamily 2 group E member 3;
AltName: Full=Retina-specific nuclear receptor
Length = 411
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 92/183 (50%), Gaps = 32/183 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVE--------SCKSRHVDIEEEVIRFQSVLNEF 137
+LL E+W ELF+LG Q+ LD L+ S + R V E Q ++ F
Sbjct: 252 ILLEEAWSELFLLGAIQWSLPLDNCPLLALPEASAGGSSQGRLVLASAETRILQETISRF 311
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGH 196
+ L +DP E+ ++A+ LFK PE+ L+D + A+Q
Sbjct: 312 RALAVDPTEFACMKALVLFK----------------------PETRGLKDPEHVEALQDQ 349
Query: 197 TQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
+Q+ L+++ +PSQ RF K+ L+LP L+ I S +E LFFR IG NT ++K + M
Sbjct: 350 SQVMLSQHSKAHHPSQLVRFGKLLLLLPSLRFISSERVELLFFRKTIG-NTPMEKLLCDM 408
Query: 257 YKN 259
+KN
Sbjct: 409 FKN 411
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVE--------SCKSRHVDIEEEVIRFQSVLNEF 53
+LL E+W ELF+LG Q+ LD L+ S + R V E Q ++ F
Sbjct: 252 ILLEEAWSELFLLGAIQWSLPLDNCPLLALPEASAGGSSQGRLVLASAETRILQETISRF 311
Query: 54 KVLNIDPYEYDYIRAITLFK 73
+ L +DP E+ ++A+ LFK
Sbjct: 312 RALAVDPTEFACMKALVLFK 331
>gi|402874751|ref|XP_003901191.1| PREDICTED: photoreceptor-specific nuclear receptor [Papio anubis]
Length = 445
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 94/185 (50%), Gaps = 36/185 (19%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHV----------DIEEEVIRFQSVLN 135
+LL E+W ELF+LG Q+ LD L+ ++ +E V+R ++
Sbjct: 286 ILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAQGRLTLASMETRVLR--ETIS 343
Query: 136 EFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQ 194
F+ L +DP E+ ++A+ LFK PE+ L+D + A+Q
Sbjct: 344 RFRALAVDPTEFACMKALVLFK----------------------PETRGLKDPEHVEALQ 381
Query: 195 GHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIW 254
+Q+ L+++ +PSQP RF K+ L+LP L+ I + +E LFFR IG NT ++K +
Sbjct: 382 DQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIG-NTPMEKLLC 440
Query: 255 HMYKN 259
M+KN
Sbjct: 441 DMFKN 445
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 12/82 (14%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRH----------VDIEEEVIRFQSVLN 51
+LL E+W ELF+LG Q+ LD L+ ++ +E V+R ++
Sbjct: 286 ILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAQGRLTLASMETRVLR--ETIS 343
Query: 52 EFKVLNIDPYEYDYIRAITLFK 73
F+ L +DP E+ ++A+ LFK
Sbjct: 344 RFRALAVDPTEFACMKALVLFK 365
>gi|6681852|gb|AAF15392.2|AF107729_1 paraneoplastic retinopathy associated protein De [Bos taurus]
Length = 427
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 92/183 (50%), Gaps = 32/183 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVE--------SCKSRHVDIEEEVIRFQSVLNEF 137
+LL E+W ELF+LG Q+ LD L+ S + R V E Q ++ F
Sbjct: 268 ILLEEAWSELFLLGAIQWSLPLDNCPLLALPEASAGGSSQGRLVLASAETRILQETISRF 327
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGH 196
+ L +DP E+ ++A+ LFK PE+ L+D + A+Q
Sbjct: 328 RALAVDPTEFACMKALVLFK----------------------PETRGLKDPEHVEALQDQ 365
Query: 197 TQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
+Q+ L+++ +PSQ RF K+ L+LP L+ I S +E LFFR IG NT ++K + M
Sbjct: 366 SQVMLSQHSKAHHPSQLVRFGKLLLLLPSLRFISSERVELLFFRKTIG-NTPMEKLLCDM 424
Query: 257 YKN 259
+KN
Sbjct: 425 FKN 427
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVE--------SCKSRHVDIEEEVIRFQSVLNEF 53
+LL E+W ELF+LG Q+ LD L+ S + R V E Q ++ F
Sbjct: 268 ILLEEAWSELFLLGAIQWSLPLDNCPLLALPEASAGGSSQGRLVLASAETRILQETISRF 327
Query: 54 KVLNIDPYEYDYIRAITLFK 73
+ L +DP E+ ++A+ LFK
Sbjct: 328 RALAVDPTEFACMKALVLFK 347
>gi|410911980|ref|XP_003969468.1| PREDICTED: COUP transcription factor 2-like [Takifugu rubripes]
Length = 431
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 89/184 (48%), Gaps = 32/184 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ + + L+ + R V + + FQ + + K
Sbjct: 261 LLRLTWSELFVLNAAQCSMPVHVAPLLAAAGLHASPMSADRVVAFMDHIRVFQEQVEKLK 320
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
+L++D EY I+AI LF T ++C L DV + +Q +
Sbjct: 321 ILHVDSAEYSCIKAIVLFTT----------------------DACGLSDVAHVEGLQEKS 358
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q L +Y+ + YP+QP RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 359 QCALEEYVRSQYPNQPNRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDML 417
Query: 258 KNAG 261
+ G
Sbjct: 418 LSGG 421
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ + + L+ + R V + + FQ + + K
Sbjct: 261 LLRLTWSELFVLNAAQCSMPVHVAPLLAAAGLHASPMSADRVVAFMDHIRVFQEQVEKLK 320
Query: 55 VLNIDPYEYDYIRAITLFKT 74
+L++D EY I+AI LF T
Sbjct: 321 ILHVDSAEYSCIKAIVLFTT 340
>gi|195434755|ref|XP_002065368.1| GK14705 [Drosophila willistoni]
gi|194161453|gb|EDW76354.1| GK14705 [Drosophila willistoni]
Length = 730
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 89/179 (49%), Gaps = 29/179 (16%)
Query: 85 HLLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR-----FQSVLNEFKV 139
HLLL ESW+ELF+L LAQ+ LDL ++ES + +++E + Q +L F+
Sbjct: 566 HLLLQESWKELFLLNLAQWTIPLDLTPILESPLIKERVLQDEATQTEMKTIQEILCRFRQ 625
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHTQ 198
+ D E ++AI LF PE+ L DV + +Q Q
Sbjct: 626 ITPDGSEVGCMKAIALFA----------------------PETAGLCDVQPVEMLQDQAQ 663
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
L+ ++ YP Q TRF ++ L+LP L++I + +E LFF+ IG N I + + MY
Sbjct: 664 CILSDHVRLRYPRQATRFGRLLLLLPSLRTIRASTIEALFFKETIG-NVPIARLLRDMY 721
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 1 HLLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR-----FQSVLNEFKV 55
HLLL ESW+ELF+L LAQ+ LDL ++ES + +++E + Q +L F+
Sbjct: 566 HLLLQESWKELFLLNLAQWTIPLDLTPILESPLIKERVLQDEATQTEMKTIQEILCRFRQ 625
Query: 56 LNIDPYEYDYIRAITLF 72
+ D E ++AI LF
Sbjct: 626 ITPDGSEVGCMKAIALF 642
>gi|47209636|emb|CAF93476.1| unnamed protein product [Tetraodon nigroviridis]
Length = 467
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 90/181 (49%), Gaps = 30/181 (16%)
Query: 86 LLLAESWRELFILGLAQY------LPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKV 139
+LL E+W ELF+L Q+ P L L +L + + ++ Q V + FK
Sbjct: 310 ILLEEAWSELFLLCAIQWSLPLDSCPLLSLPDLCPGIQGKGSYPSLDLRLLQEVFSRFKA 369
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHTQ 198
L +DP E+ ++AI LFK PE+ L+D + +Q +Q
Sbjct: 370 LAVDPTEFACLKAIVLFK----------------------PETRGLKDPEQVENLQDQSQ 407
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 258
+ L ++I + Y SQP RF K+ L+LP L+ + S +E LFF IG NT ++K + M+K
Sbjct: 408 VMLGQHIRSHYSSQPARFGKLLLLLPSLRFVASERIELLFFHRTIG-NTPMEKLLCDMFK 466
Query: 259 N 259
N
Sbjct: 467 N 467
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 2 LLLAESWRELFILGLAQY------LPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKV 55
+LL E+W ELF+L Q+ P L L +L + + ++ Q V + FK
Sbjct: 310 ILLEEAWSELFLLCAIQWSLPLDSCPLLSLPDLCPGIQGKGSYPSLDLRLLQEVFSRFKA 369
Query: 56 LNIDPYEYDYIRAITLFKT 74
L +DP E+ ++AI LFK
Sbjct: 370 LAVDPTEFACLKAIVLFKP 388
>gi|391330852|ref|XP_003739866.1| PREDICTED: photoreceptor-specific nuclear receptor-like
[Metaseiulus occidentalis]
Length = 467
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 96/189 (50%), Gaps = 38/189 (20%)
Query: 86 LLLAESWRELFILGLAQYL--------------PSLDLGELVESCKS--RHVDIEEEVIR 129
+LL E+W ELF+L Q+ P D+ E + + + ++ + + +
Sbjct: 300 ILLEETWSELFVLCAIQWCLPLDSSTSTHPSIHPLFDINEHMSTSATLKGNLGLLNSIKQ 359
Query: 130 FQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIA 189
Q +L++F+ + +DP E+ ++AI LF+ D R L+D
Sbjct: 360 LQEILSKFRSVCVDPAEFACLKAIILFRA-------DARG--------------LKDCHH 398
Query: 190 IAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTI 249
+ A+Q Q+ L +++ + +P+ P RF ++ L+LP L+++ S +E LFF+ IIG +T +
Sbjct: 399 VEALQDQAQLMLQQHVRSQHPTHPVRFGRLLLMLPSLRTVSSDKIESLFFQKIIG-STPM 457
Query: 250 KKTIWHMYK 258
+K + M+K
Sbjct: 458 EKLLCDMFK 466
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 16/89 (17%)
Query: 2 LLLAESWRELFILGLAQYL--------------PSLDLGELVESCKS--RHVDIEEEVIR 45
+LL E+W ELF+L Q+ P D+ E + + + ++ + + +
Sbjct: 300 ILLEETWSELFVLCAIQWCLPLDSSTSTHPSIHPLFDINEHMSTSATLKGNLGLLNSIKQ 359
Query: 46 FQSVLNEFKVLNIDPYEYDYIRAITLFKT 74
Q +L++F+ + +DP E+ ++AI LF+
Sbjct: 360 LQEILSKFRSVCVDPAEFACLKAIILFRA 388
>gi|170053585|ref|XP_001862743.1| tailless [Culex quinquefasciatus]
gi|167874052|gb|EDS37435.1| tailless [Culex quinquefasciatus]
Length = 397
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 87/179 (48%), Gaps = 20/179 (11%)
Query: 86 LLLAESWRELFILGLAQYLPSLDL--------------GELVESCKSRHVDIEEEVIRFQ 131
+L ESWRE FIL +AQYL ++ GE V C R V+I FQ
Sbjct: 216 VLFEESWREFFILAVAQYLQPINFNHLLVAYEYLNTNRGEPVPECIIREVEI------FQ 269
Query: 132 SVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIA 191
+L + L +D E+ Y+RA+ L+KT + E + SSS D +++V +
Sbjct: 270 EILAQIVALRVDINEFVYLRAVVLYKTEFDPESSISSSSSDGSDIISSTSKSIQEVSTVR 329
Query: 192 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIK 250
A++ + L YI T P R+ + +LP L+++ + +EELFFR IG +K
Sbjct: 330 ALEDGAKDALASYIRTCRPGPIDRYRALLQLLPALRNVSTYTIEELFFRRNIGPAPLLK 388
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 45/89 (50%), Gaps = 20/89 (22%)
Query: 2 LLLAESWRELFILGLAQYLPSLDL--------------GELVESCKSRHVDIEEEVIRFQ 47
+L ESWRE FIL +AQYL ++ GE V C R V+I FQ
Sbjct: 216 VLFEESWREFFILAVAQYLQPINFNHLLVAYEYLNTNRGEPVPECIIREVEI------FQ 269
Query: 48 SVLNEFKVLNIDPYEYDYIRAITLFKTAF 76
+L + L +D E+ Y+RA+ L+KT F
Sbjct: 270 EILAQIVALRVDINEFVYLRAVVLYKTEF 298
>gi|47224170|emb|CAG13090.1| unnamed protein product [Tetraodon nigroviridis]
Length = 746
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 590 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 649
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF T ++C L DV + ++Q +
Sbjct: 650 ALHVDSAEYSCLKAIVLFTT----------------------DACGLSDVAHVESLQEKS 687
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 688 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 745
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 88/190 (46%), Gaps = 36/190 (18%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 166 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 225
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSS------------SSSDDGSEHPESC--- 183
L++D EY ++AI LF T + D R+ + S S P C
Sbjct: 226 ALHVDSAEYSCLKAIVLFTT---GKTIDGRAPKFTLCMNVTITHADSSHSSPDPNICAGY 282
Query: 184 ----------LRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLV 233
L DV + ++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V
Sbjct: 283 MLLLILDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSV 342
Query: 234 LEELFFRNII 243
+E+LFF +I
Sbjct: 343 IEQLFFVRLI 352
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 166 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 225
Query: 55 VLNIDPYEYDYIRAITLFKTAFT 77
L++D EY ++AI LF T T
Sbjct: 226 ALHVDSAEYSCLKAIVLFTTGKT 248
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 590 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 649
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF T
Sbjct: 650 ALHVDSAEYSCLKAIVLFTT 669
>gi|410907273|ref|XP_003967116.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 1 [Takifugu rubripes]
Length = 417
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 247 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 306
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF T ++C L DV + ++Q +
Sbjct: 307 ALHVDSAEYSCLKAIVLFTT----------------------DACGLSDVAHVESLQEKS 344
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 345 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 402
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 247 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 306
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF T
Sbjct: 307 ALHVDSAEYSCLKAIVLFTT 326
>gi|410907275|ref|XP_003967117.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 2 [Takifugu rubripes]
Length = 423
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 253 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 312
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF T ++C L DV + ++Q +
Sbjct: 313 ALHVDSAEYSCLKAIVLFTT----------------------DACGLSDVAHVESLQEKS 350
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 351 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 408
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 253 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 312
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF T
Sbjct: 313 ALHVDSAEYSCLKAIVLFTT 332
>gi|348505807|ref|XP_003440452.1| PREDICTED: COUP transcription factor 2-like isoform 2 [Oreochromis
niloticus]
Length = 423
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 253 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 312
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF T ++C L DV + ++Q +
Sbjct: 313 ALHVDSAEYSCLKAIVLFTT----------------------DACGLSDVAHVESLQEKS 350
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 351 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 408
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 253 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 312
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF T
Sbjct: 313 ALHVDSAEYSCLKAIVLFTT 332
>gi|348505805|ref|XP_003440451.1| PREDICTED: COUP transcription factor 2-like isoform 1 [Oreochromis
niloticus]
Length = 417
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 247 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 306
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF T ++C L DV + ++Q +
Sbjct: 307 ALHVDSAEYSCLKAIVLFTT----------------------DACGLSDVAHVESLQEKS 344
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 345 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 402
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 247 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 306
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF T
Sbjct: 307 ALHVDSAEYSCLKAIVLFTT 326
>gi|126272955|ref|XP_001371421.1| PREDICTED: photoreceptor-specific nuclear receptor-like
[Monodelphis domestica]
Length = 405
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 88/181 (48%), Gaps = 30/181 (16%)
Query: 86 LLLAESWRELFILGLAQY------LPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKV 139
+LL E+W ELF+L Q+ P L + + + + + E Q + FK
Sbjct: 248 ILLEEAWSELFLLCAIQWSLPLESCPLLSVPDPTPGIQGKLMSASIETQILQETIARFKS 307
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHTQ 198
L +DP E+ ++A+ LFK PE+ L+D + +Q +Q
Sbjct: 308 LTVDPTEFACMKALVLFK----------------------PETRGLKDPEQVENLQDQSQ 345
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 258
+ L ++ YPSQP RF K+ L+LP L+ I S +E LFFR IG NT ++K + M+K
Sbjct: 346 VMLGQHNKMHYPSQPVRFGKLLLLLPALRFISSDRIELLFFRRTIG-NTPMEKLLCDMFK 404
Query: 259 N 259
N
Sbjct: 405 N 405
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 2 LLLAESWRELFILGLAQY------LPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKV 55
+LL E+W ELF+L Q+ P L + + + + + E Q + FK
Sbjct: 248 ILLEEAWSELFLLCAIQWSLPLESCPLLSVPDPTPGIQGKLMSASIETQILQETIARFKS 307
Query: 56 LNIDPYEYDYIRAITLFK 73
L +DP E+ ++A+ LFK
Sbjct: 308 LTVDPTEFACMKALVLFK 325
>gi|307185619|gb|EFN71557.1| Nuclear receptor subfamily 2 group E member 1 [Camponotus
floridanus]
Length = 373
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 88/155 (56%), Gaps = 5/155 (3%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLNIDPYE 146
LL SWRELF+L AQ LP+LD L+ + + + EV RF+ L F +++D +E
Sbjct: 204 LLECSWRELFLLAAAQMLPTLDPTPLLPP---QGIGLAIEVTRFRETLAGFNAMHLDQHE 260
Query: 147 YDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIH 206
+ IRAI LFK ++ E + S+SS + LRD ++A ++ Q+ L + ++
Sbjct: 261 FACIRAIVLFKAGLDSESVSSNRSTSSSNSPGPGSR-LRDPASVARLRDSAQLALGQRLN 319
Query: 207 TVYPSQPT-RFCKIQLILPRLKSIPSLVLEELFFR 240
+ T RF K+ L+LP L+S+ + +EELFFR
Sbjct: 320 SASLGAGTLRFGKLLLLLPSLRSVSTHAIEELFFR 354
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLNIDPYE 62
LL SWRELF+L AQ LP+LD L+ + + + EV RF+ L F +++D +E
Sbjct: 204 LLECSWRELFLLAAAQMLPTLDPTPLLPP---QGIGLAIEVTRFRETLAGFNAMHLDQHE 260
Query: 63 YDYIRAITLFKTAFTS 78
+ IRAI LFK S
Sbjct: 261 FACIRAIVLFKAGLDS 276
>gi|395501668|ref|XP_003755213.1| PREDICTED: LOW QUALITY PROTEIN: photoreceptor-specific nuclear
receptor [Sarcophilus harrisii]
Length = 327
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 88/181 (48%), Gaps = 30/181 (16%)
Query: 86 LLLAESWRELFILGLAQY------LPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKV 139
+LL E+W ELF+L Q+ P L + + + + + E Q + FK
Sbjct: 170 ILLEEAWSELFLLCAIQWSLPLESCPLLSVPDPTPGIQGKLMSAPIETQILQETIARFKS 229
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHTQ 198
L +DP E+ ++A+ LFK PE+ L+D + +Q +Q
Sbjct: 230 LTVDPTEFACMKALVLFK----------------------PETRGLKDPEQVENLQDQSQ 267
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 258
+ L ++ YPSQP RF K+ L+LP L+ I S +E LFFR IG NT ++K + M+K
Sbjct: 268 VMLGQHNKMHYPSQPVRFGKLLLLLPSLRFISSDRIELLFFRRTIG-NTPMEKLLCDMFK 326
Query: 259 N 259
N
Sbjct: 327 N 327
Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 2 LLLAESWRELFILGLAQY------LPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKV 55
+LL E+W ELF+L Q+ P L + + + + + E Q + FK
Sbjct: 170 ILLEEAWSELFLLCAIQWSLPLESCPLLSVPDPTPGIQGKLMSAPIETQILQETIARFKS 229
Query: 56 LNIDPYEYDYIRAITLFK 73
L +DP E+ ++A+ LFK
Sbjct: 230 LTVDPTEFACMKALVLFK 247
>gi|209156457|pdb|3CJW|A Chain A, Crystal Structure Of The Human Coup-Tfii Ligand Binding
Domain
Length = 244
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 74 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 133
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L DV + ++Q +
Sbjct: 134 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDVAHVESLQEKS 171
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 172 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 229
Score = 37.4 bits (85), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 74 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 133
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 134 ALHVDSAEYSCLKAIVLFTS 153
>gi|307204825|gb|EFN83383.1| Steroid receptor seven-up, isoforms B/C [Harpegnathos saltator]
Length = 458
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 86/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL W ELF+L +Q L + L+ + R V + + FQ + + K
Sbjct: 302 LLRLVWSELFVLNASQCSMPLHVAPLIAAAGLHATPMAADRVVAFMDHIRIFQEQVEKLK 361
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF T ++C L DV I ++Q +
Sbjct: 362 ALHVDTAEYSCLKAIVLFTT----------------------DACGLSDVAHIESLQEKS 399
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y T YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 400 QCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIETLIRDM 457
Score = 37.0 bits (84), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL W ELF+L +Q L + L+ + R V + + FQ + + K
Sbjct: 302 LLRLVWSELFVLNASQCSMPLHVAPLIAAAGLHATPMAADRVVAFMDHIRIFQEQVEKLK 361
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF T
Sbjct: 362 ALHVDTAEYSCLKAIVLFTT 381
>gi|482928|emb|CAA54096.1| ARP-1 [Mus musculus]
Length = 414
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 244 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 303
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L DV + ++Q +
Sbjct: 304 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDVAHVESLQEKS 341
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 342 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 399
Score = 37.4 bits (85), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 244 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 303
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 304 ALHVDSAEYSCLKAIVLFTS 323
>gi|301777570|ref|XP_002924203.1| PREDICTED: COUP transcription factor 2-like [Ailuropoda
melanoleuca]
Length = 383
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 213 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 272
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L DV + ++Q +
Sbjct: 273 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDVAHVESLQEKS 310
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 311 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 368
Score = 37.4 bits (85), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 213 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 272
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 273 ALHVDSAEYSCLKAIVLFTS 292
>gi|195146576|ref|XP_002014260.1| GL19043 [Drosophila persimilis]
gi|194106213|gb|EDW28256.1| GL19043 [Drosophila persimilis]
Length = 819
Score = 78.2 bits (191), Expect = 3e-12, Method: Composition-based stats.
Identities = 57/179 (31%), Positives = 88/179 (49%), Gaps = 29/179 (16%)
Query: 85 HLLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR-----FQSVLNEFKV 139
HLLL ESW+ELF+L LAQ+ LDL ++ES + +++E + Q +L F+
Sbjct: 653 HLLLQESWKELFLLNLAQWTIPLDLTPILESPLIKERVLQDEATQTEMKTIQEILCRFRQ 712
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHTQ 198
+ D E ++AI LF PE+ L DV + +Q Q
Sbjct: 713 ITPDGSEVGCMKAIALFA----------------------PETAGLCDVQPVEMLQDQAQ 750
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
L+ ++ Y Q TRF ++ L+LP L++I + +E LFF+ IG N I + + MY
Sbjct: 751 CILSDHVRLRYSRQATRFGRLLLLLPSLRTIRASTIEALFFKETIG-NVPIARLLRDMY 808
Score = 51.2 bits (121), Expect = 5e-04, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 1 HLLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR-----FQSVLNEFKV 55
HLLL ESW+ELF+L LAQ+ LDL ++ES + +++E + Q +L F+
Sbjct: 653 HLLLQESWKELFLLNLAQWTIPLDLTPILESPLIKERVLQDEATQTEMKTIQEILCRFRQ 712
Query: 56 LNIDPYEYDYIRAITLF 72
+ D E ++AI LF
Sbjct: 713 ITPDGSEVGCMKAIALF 729
>gi|259013303|ref|NP_001158447.1| photoreceptor-specific nuclear receptor protein [Saccoglossus
kowalevskii]
gi|196475499|gb|ACG76360.1| photoreceptor-specific nuclear receptor protein [Saccoglossus
kowalevskii]
Length = 439
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 92/182 (50%), Gaps = 31/182 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELV---ESCKSRHVDIEEEV----IR-FQSVLNEF 137
+LL E+W ELF+L Q+ L+ L+ E ++ ++ + IR Q ++ F
Sbjct: 281 ILLEEAWSELFLLCAIQWSMPLESSPLLVAPEQSQATQLNGKTAAMLSDIRVLQEIMARF 340
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
K +N+DP E+ ++AI LFK D R L+D + +Q
Sbjct: 341 KAMNVDPAEFACMKAIVLFK-------PDTRG--------------LKDPQQVENLQDQA 379
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ L ++ +P+QPTRF ++ L+LP L+ + +E LFF + IG NT +++ + M+
Sbjct: 380 QLMLGQHTRN-HPTQPTRFGRLLLMLPSLRFVTPNRIENLFFHHTIG-NTPMERLLCDMF 437
Query: 258 KN 259
KN
Sbjct: 438 KN 439
Score = 43.5 bits (101), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 8/80 (10%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELV---ESCKSRHVDIEEEV----IR-FQSVLNEF 53
+LL E+W ELF+L Q+ L+ L+ E ++ ++ + IR Q ++ F
Sbjct: 281 ILLEEAWSELFLLCAIQWSMPLESSPLLVAPEQSQATQLNGKTAAMLSDIRVLQEIMARF 340
Query: 54 KVLNIDPYEYDYIRAITLFK 73
K +N+DP E+ ++AI LFK
Sbjct: 341 KAMNVDPAEFACMKAIVLFK 360
>gi|284424952|dbj|BAI67122.1| nuclear receptor [Taeniopygia guttata]
Length = 181
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 31/167 (18%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 36 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 95
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L DV + ++Q +
Sbjct: 96 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDVAHVESLQEKS 133
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G
Sbjct: 134 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG 180
Score = 37.4 bits (85), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 36 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 95
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 96 ALHVDSAEYSCLKAIVLFTS 115
>gi|281353714|gb|EFB29298.1| hypothetical protein PANDA_011329 [Ailuropoda melanoleuca]
Length = 391
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 92/182 (50%), Gaps = 30/182 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIRF--------QSVLNEF 137
+LL E+W ELF+LG Q+ LD L+ + ++ + + Q ++ F
Sbjct: 232 ILLEEAWSELFLLGAIQWSLPLDSCPLLAAPEASAAGSSQGQLALASAESRILQETISRF 291
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ L +D E+ ++A+ LFK E + + G EH + A+Q +
Sbjct: 292 RALAVDATEFACLKALVLFKP----ETRGLK-------GPEH----------VEALQDQS 330
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ L+++ +PSQP RF K+ L+LP L+ I S +E LFFR IG NT ++K + M+
Sbjct: 331 QVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITSERVELLFFRKTIG-NTPMEKLLCDMF 389
Query: 258 KN 259
KN
Sbjct: 390 KN 391
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR--------FQSVLNEF 53
+LL E+W ELF+LG Q+ LD L+ + ++ + + Q ++ F
Sbjct: 232 ILLEEAWSELFLLGAIQWSLPLDSCPLLAAPEASAAGSSQGQLALASAESRILQETISRF 291
Query: 54 KVLNIDPYEYDYIRAITLFK 73
+ L +D E+ ++A+ LFK
Sbjct: 292 RALAVDATEFACLKALVLFK 311
>gi|195152898|ref|XP_002017373.1| GL22274 [Drosophila persimilis]
gi|194112430|gb|EDW34473.1| GL22274 [Drosophila persimilis]
Length = 777
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 84/174 (48%), Gaps = 32/174 (18%)
Query: 92 WRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFKVLNID 143
W ELF+L +Q L + L+ + R V + + FQ + + K L++D
Sbjct: 374 WSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVD 433
Query: 144 PYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHTQIFLN 202
EY ++AI LF T ++C L DV I ++Q +Q L
Sbjct: 434 SAEYSCLKAIVLFTT----------------------DACGLSDVTHIESLQEKSQCALE 471
Query: 203 KYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
+Y T YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 472 EYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIETLIRDM 524
>gi|351697339|gb|EHB00258.1| COUP transcription factor 2 [Heterocephalus glaber]
Length = 271
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 101 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 160
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L DV + ++Q +
Sbjct: 161 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDVAHVESLQEKS 198
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 199 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 256
Score = 37.4 bits (85), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 101 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 160
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 161 ALHVDSAEYSCLKAIVLFTS 180
>gi|32454395|gb|AAP82999.1| ovalbumin upstream promoter transcription factor II [Bos taurus]
Length = 339
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 169 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 228
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L DV + ++Q +
Sbjct: 229 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDVTHVESLQEKS 266
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 267 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 324
Score = 37.4 bits (85), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 169 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 228
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 229 ALHVDSAEYSCLKAIVLFTS 248
>gi|350420018|ref|XP_003492371.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Bombus impatiens]
Length = 405
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 84/158 (53%), Gaps = 11/158 (6%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLNIDPYE 146
LL SWRELF+L AQ LP+LD L+ + + EV RF+ L F +N+D +E
Sbjct: 236 LLEFSWRELFLLAAAQILPTLDPTTLLPP-APHGLSLAVEVNRFRETLAGFHAMNLDQHE 294
Query: 147 YDYIRAITLFKTVIEDEVKDNRSSSSSDD----GSEHPESCLRDVIAIAAIQGHTQIFLN 202
+ IRAI LFK ++ E + SS+ GS LRD A+A ++ Q+ L
Sbjct: 295 FACIRAIVLFKAGLDSEPTPSSRSSTGSASPSVGSR-----LRDAAAVARLRDGAQLALG 349
Query: 203 KYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
+ + RF K+ L+LP L+S+ + +EELFFR
Sbjct: 350 QRLSGASLGA-LRFGKLLLLLPSLRSVSTHAIEELFFR 386
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLNIDPYE 62
LL SWRELF+L AQ LP+LD L+ + + EV RF+ L F +N+D +E
Sbjct: 236 LLEFSWRELFLLAAAQILPTLDPTTLLPP-APHGLSLAVEVNRFRETLAGFHAMNLDQHE 294
Query: 63 YDYIRAITLFKTAFTS 78
+ IRAI LFK S
Sbjct: 295 FACIRAIVLFKAGLDS 310
>gi|198454165|ref|XP_001359502.2| GA11038 [Drosophila pseudoobscura pseudoobscura]
gi|198132680|gb|EAL28648.2| GA11038 [Drosophila pseudoobscura pseudoobscura]
Length = 777
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 84/174 (48%), Gaps = 32/174 (18%)
Query: 92 WRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFKVLNID 143
W ELF+L +Q L + L+ + R V + + FQ + + K L++D
Sbjct: 374 WSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVD 433
Query: 144 PYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHTQIFLN 202
EY ++AI LF T ++C L DV I ++Q +Q L
Sbjct: 434 SAEYSCLKAIVLFTT----------------------DACGLSDVTHIESLQEKSQCALE 471
Query: 203 KYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
+Y T YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 472 EYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIETLIRDM 524
>gi|60654339|gb|AAX29860.1| nuclear receptor subfamily 2 group F member 2 [synthetic construct]
Length = 415
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 244 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 303
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L DV + ++Q +
Sbjct: 304 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDVAHVESLQEKS 341
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 342 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 399
Score = 37.4 bits (85), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 244 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 303
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 304 ALHVDSAEYSCLKAIVLFTS 323
>gi|395747169|ref|XP_003778564.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 2 [Pongo
abelii]
Length = 414
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 244 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 303
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L DV + ++Q +
Sbjct: 304 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDVAHVESLQEKS 341
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 342 QCXLEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 399
Score = 37.4 bits (85), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 244 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 303
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 304 ALHVDSAEYSCLKAIVLFTS 323
>gi|431891667|gb|ELK02268.1| COUP transcription factor 2, partial [Pteropus alecto]
gi|432091002|gb|ELK24218.1| COUP transcription factor 2, partial [Myotis davidii]
Length = 343
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 173 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 232
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L DV + ++Q +
Sbjct: 233 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDVAHVESLQEKS 270
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 271 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 328
Score = 37.4 bits (85), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 173 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 232
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 233 ALHVDSAEYSCLKAIVLFTS 252
>gi|417409902|gb|JAA51440.1| Putative coup transcription factor 2 isoform 1, partial [Desmodus
rotundus]
Length = 346
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 176 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 235
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L DV + ++Q +
Sbjct: 236 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDVAHVESLQEKS 273
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 274 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 331
Score = 37.4 bits (85), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 176 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 235
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 236 ALHVDSAEYSCLKAIVLFTS 255
>gi|281347624|gb|EFB23208.1| hypothetical protein PANDA_013481 [Ailuropoda melanoleuca]
Length = 357
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 187 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 246
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L DV + ++Q +
Sbjct: 247 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDVAHVESLQEKS 284
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 285 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 342
Score = 37.4 bits (85), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 187 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 246
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 247 ALHVDSAEYSCLKAIVLFTS 266
>gi|441616846|ref|XP_004088402.1| PREDICTED: COUP transcription factor 2 [Nomascus leucogenys]
Length = 422
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 252 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 311
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L DV + ++Q +
Sbjct: 312 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDVAHVESLQEKS 349
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 350 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 407
Score = 37.4 bits (85), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 252 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 311
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 312 ALHVDSAEYSCLKAIVLFTS 331
>gi|444730350|gb|ELW70737.1| COUP transcription factor 2 [Tupaia chinensis]
Length = 413
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 243 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 302
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L DV + ++Q +
Sbjct: 303 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDVAHVESLQEKS 340
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 341 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 398
Score = 37.0 bits (84), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 243 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 302
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 303 ALHVDSAEYSCLKAIVLFTS 322
>gi|383856816|ref|XP_003703903.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Megachile rotundata]
Length = 397
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 86/158 (54%), Gaps = 11/158 (6%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLNIDPYE 146
LL SWRELF+L AQ LP+LD L+ + + + EV RF+ L F +++D +E
Sbjct: 228 LLESSWRELFLLAAAQILPTLDPTALLPP-GPQGLGLAVEVNRFKETLAGFHAMSLDQHE 286
Query: 147 YDYIRAITLFKTVIEDE----VKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLN 202
+ IRAI LFK ++ E + + S+S GS LRD A+A ++ Q+ L
Sbjct: 287 FACIRAIVLFKAGLDSEPLPSSRSSNGSASPSTGSR-----LRDPAAVARLRDGAQLALG 341
Query: 203 KYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
+ + RF K+ L+LP L+S+ + +EELFFR
Sbjct: 342 QRLSGASFGA-LRFGKLLLLLPSLRSVSTHAIEELFFR 378
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLNIDPYE 62
LL SWRELF+L AQ LP+LD L+ + + + EV RF+ L F +++D +E
Sbjct: 228 LLESSWRELFLLAAAQILPTLDPTALLPP-GPQGLGLAVEVNRFKETLAGFHAMSLDQHE 286
Query: 63 YDYIRAITLFKTAFTS 78
+ IRAI LFK S
Sbjct: 287 FACIRAIVLFKAGLDS 302
>gi|440909469|gb|ELR59375.1| COUP transcription factor 2, partial [Bos grunniens mutus]
Length = 348
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 178 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 237
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L DV + ++Q +
Sbjct: 238 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDVAHVESLQEKS 275
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 276 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 333
Score = 37.4 bits (85), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 178 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 237
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 238 ALHVDSAEYSCLKAIVLFTS 257
>gi|27806025|ref|NP_776827.1| COUP transcription factor 2 [Bos taurus]
gi|10719969|sp|Q9TTR7.1|COT2_BOVIN RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=COUP transcription factor II; Short=COUP-TF II;
AltName: Full=Nuclear receptor subfamily 2 group F
member 2
gi|5870338|emb|CAB55624.1| COUP-TFII transcription factor [Bos taurus]
gi|115305372|gb|AAI23678.1| Nuclear receptor subfamily 2, group F, member 2 [Bos taurus]
gi|296475581|tpg|DAA17696.1| TPA: COUP transcription factor 2 [Bos taurus]
Length = 414
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 244 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 303
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L DV + ++Q +
Sbjct: 304 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDVAHVESLQEKS 341
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 342 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 399
Score = 37.4 bits (85), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 244 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 303
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 304 ALHVDSAEYSCLKAIVLFTS 323
>gi|14149746|ref|NP_066285.1| COUP transcription factor 2 isoform a [Homo sapiens]
gi|45598394|ref|NP_033827.2| COUP transcription factor 2 isoform 1 [Mus musculus]
gi|109082429|ref|XP_001099957.1| PREDICTED: COUP transcription factor 2 isoform 4 [Macaca mulatta]
gi|114659046|ref|XP_001135545.1| PREDICTED: COUP transcription factor 2 isoform 4 [Pan troglodytes]
gi|296203984|ref|XP_002749136.1| PREDICTED: COUP transcription factor 2 [Callithrix jacchus]
gi|332238780|ref|XP_003268580.1| PREDICTED: COUP transcription factor 2 isoform 2 [Nomascus
leucogenys]
gi|395831197|ref|XP_003788693.1| PREDICTED: COUP transcription factor 2 [Otolemur garnettii]
gi|402875344|ref|XP_003901468.1| PREDICTED: COUP transcription factor 2 [Papio anubis]
gi|426380391|ref|XP_004056850.1| PREDICTED: COUP transcription factor 2 [Gorilla gorilla gorilla]
gi|114203|sp|P24468.1|COT2_HUMAN RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=Apolipoprotein A-I regulatory protein 1;
Short=ARP-1; AltName: Full=COUP transcription factor II;
Short=COUP-TF II; AltName: Full=Nuclear receptor
subfamily 2 group F member 2
gi|46397833|sp|P43135.2|COT2_MOUSE RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=Apolipoprotein AI regulatory protein 1;
Short=ARP-1; AltName: Full=COUP transcription factor II;
Short=COUP-TF II; AltName: Full=Nuclear receptor
subfamily 2 group F member 2
gi|2137150|pir||I48975 apolipoprotein A-I regulatory protein 1 - mouse
gi|179024|gb|AAA86429.1| apolipoprotein AI regulatory protein-1 [Homo sapiens]
gi|466470|gb|AAA19854.1| COUP-TFII [Mus musculus]
gi|1575343|gb|AAB09475.1| apoliprotein AI regulatory protein-1 [Homo sapiens]
gi|15779213|gb|AAH14664.1| Nuclear receptor subfamily 2, group F, member 2 [Homo sapiens]
gi|27503725|gb|AAH42484.1| Nuclear receptor subfamily 2, group F, member 2 [Mus musculus]
gi|27781285|gb|AAH42897.1| Nuclear receptor subfamily 2, group F, member 2 [Homo sapiens]
gi|61363669|gb|AAX42426.1| nuclear receptor subfamily 2 group F member 2 [synthetic construct]
gi|74148522|dbj|BAE24245.1| unnamed protein product [Mus musculus]
gi|119622600|gb|EAX02195.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_a
[Homo sapiens]
gi|119622603|gb|EAX02198.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_a
[Homo sapiens]
gi|216409730|dbj|BAH02302.1| ovalbumin upstream promoter transcription factor II [Homo sapiens]
gi|307685477|dbj|BAJ20669.1| nuclear receptor subfamily 2, group F, member 2 [synthetic
construct]
gi|325495507|gb|ADZ17359.1| chicken ovalbumin upstream promoter-transcription factor II variant
1 [Homo sapiens]
gi|410216134|gb|JAA05286.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410216138|gb|JAA05288.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410216140|gb|JAA05289.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410258704|gb|JAA17319.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410307120|gb|JAA32160.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410307122|gb|JAA32161.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410307126|gb|JAA32163.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410336357|gb|JAA37125.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410336359|gb|JAA37126.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
Length = 414
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 244 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 303
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L DV + ++Q +
Sbjct: 304 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDVAHVESLQEKS 341
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 342 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 399
Score = 37.4 bits (85), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 244 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 303
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 304 ALHVDSAEYSCLKAIVLFTS 323
>gi|298228993|ref|NP_001177181.1| COUP transcription factor 2 isoform 1 [Sus scrofa]
gi|344284391|ref|XP_003413951.1| PREDICTED: COUP transcription factor 2 isoform 1 [Loxodonta
africana]
gi|345798235|ref|XP_849497.2| PREDICTED: COUP transcription factor 2 isoform 2 [Canis lupus
familiaris]
gi|348579089|ref|XP_003475314.1| PREDICTED: COUP transcription factor 2 [Cavia porcellus]
Length = 414
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 244 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 303
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L DV + ++Q +
Sbjct: 304 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDVAHVESLQEKS 341
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 342 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 399
Score = 37.4 bits (85), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 244 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 303
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 304 ALHVDSAEYSCLKAIVLFTS 323
>gi|18158445|ref|NP_542956.1| COUP transcription factor 2 [Rattus norvegicus]
gi|3913096|sp|O09018.1|COT2_RAT RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=Apolipoprotein A-I regulatory protein 1;
Short=ARP-1; AltName: Full=COUP transcription factor II;
Short=COUP-TF II; AltName: Full=COUPb; AltName:
Full=Nuclear receptor subfamily 2 group F member 2;
AltName: Full=Ovalbumin upstream promoter beta nuclear
receptor
gi|2197125|gb|AAB61297.1| ovalbumin upstream promoter beta nuclear receptor rCOUPb [Rattus
norvegicus]
gi|149057164|gb|EDM08487.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_a
[Rattus norvegicus]
Length = 414
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 244 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 303
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L DV + ++Q +
Sbjct: 304 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDVAHVESLQEKS 341
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 342 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 399
Score = 37.4 bits (85), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 244 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 303
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 304 ALHVDSAEYSCLKAIVLFTS 323
>gi|73611910|ref|NP_899084.2| COUP transcription factor 2 isoform 2 [Mus musculus]
gi|223555949|ref|NP_001138627.1| COUP transcription factor 2 isoform b [Homo sapiens]
gi|298228995|ref|NP_001177182.1| COUP transcription factor 2 isoform 2 [Sus scrofa]
gi|73951111|ref|XP_536178.2| PREDICTED: COUP transcription factor 2 isoform 1 [Canis lupus
familiaris]
gi|291409135|ref|XP_002720865.1| PREDICTED: nuclear receptor subfamily 2, group F, member 2-like
[Oryctolagus cuniculus]
gi|332238778|ref|XP_003268579.1| PREDICTED: COUP transcription factor 2 isoform 1 [Nomascus
leucogenys]
gi|338717599|ref|XP_003363656.1| PREDICTED: COUP transcription factor 2-like isoform 1 [Equus
caballus]
gi|344284393|ref|XP_003413952.1| PREDICTED: COUP transcription factor 2 isoform 2 [Loxodonta
africana]
gi|354465707|ref|XP_003495319.1| PREDICTED: COUP transcription factor 2-like [Cricetulus griseus]
gi|395502497|ref|XP_003755616.1| PREDICTED: COUP transcription factor 2 isoform 2 [Sarcophilus
harrisii]
gi|403258146|ref|XP_003921638.1| PREDICTED: COUP transcription factor 2 isoform 1 [Saimiri
boliviensis boliviensis]
gi|410960648|ref|XP_003986901.1| PREDICTED: COUP transcription factor 2 isoform 1 [Felis catus]
gi|76780223|gb|AAI06084.1| NR2F2 protein [Homo sapiens]
gi|119622601|gb|EAX02196.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_b
[Homo sapiens]
gi|149057165|gb|EDM08488.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_b
[Rattus norvegicus]
gi|194295609|gb|ACF40832.1| orphan nuclear receptor COUP-TFII [Sus scrofa]
gi|194377044|dbj|BAG63083.1| unnamed protein product [Homo sapiens]
gi|283482326|emb|CAR63888.1| nuclear receptor subfamily 2, group F, member 2 [Homo sapiens]
gi|325495509|gb|ADZ17360.1| chicken ovalbumin upstream promoter-transcription factor II variant
2 [Homo sapiens]
gi|384949090|gb|AFI38150.1| COUP transcription factor 2 isoform b [Macaca mulatta]
gi|387542112|gb|AFJ71683.1| COUP transcription factor 2 isoform b [Macaca mulatta]
gi|410216136|gb|JAA05287.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410258702|gb|JAA17318.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410307124|gb|JAA32162.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
Length = 281
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 111 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 170
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L DV + ++Q +
Sbjct: 171 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDVAHVESLQEKS 208
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 209 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 266
Score = 37.0 bits (84), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 111 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 170
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 171 ALHVDSAEYSCLKAIVLFTS 190
>gi|355778322|gb|EHH63358.1| COUP transcription factor 2, partial [Macaca fascicularis]
Length = 352
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 182 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 241
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L DV + ++Q +
Sbjct: 242 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDVAHVESLQEKS 279
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 280 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 337
Score = 37.4 bits (85), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 182 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 241
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 242 ALHVDSAEYSCLKAIVLFTS 261
>gi|242247451|ref|NP_001156015.1| COUP transcription factor 2 [Ovis aries]
gi|134024805|gb|AAI34736.1| NR2F2 protein [Bos taurus]
gi|238799806|gb|ACR55775.1| nuclear receptor subfamily 2 group F member 2 [Ovis aries]
Length = 281
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 111 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 170
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L DV + ++Q +
Sbjct: 171 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDVAHVESLQEKS 208
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 209 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 266
Score = 37.0 bits (84), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 111 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 170
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 171 ALHVDSAEYSCLKAIVLFTS 190
>gi|223555951|ref|NP_001138628.1| COUP transcription factor 2 isoform c [Homo sapiens]
gi|223555953|ref|NP_001138629.1| COUP transcription factor 2 isoform c [Homo sapiens]
gi|73951115|ref|XP_858826.1| PREDICTED: COUP transcription factor 2 isoform 4 [Canis lupus
familiaris]
gi|114659052|ref|XP_001135366.1| PREDICTED: COUP transcription factor 2 isoform 2 [Pan troglodytes]
gi|332238782|ref|XP_003268581.1| PREDICTED: COUP transcription factor 2 isoform 3 [Nomascus
leucogenys]
gi|338717601|ref|XP_003363657.1| PREDICTED: COUP transcription factor 2-like isoform 2 [Equus
caballus]
gi|403258148|ref|XP_003921639.1| PREDICTED: COUP transcription factor 2 isoform 2 [Saimiri
boliviensis boliviensis]
gi|403258150|ref|XP_003921640.1| PREDICTED: COUP transcription factor 2 isoform 3 [Saimiri
boliviensis boliviensis]
gi|410960650|ref|XP_003986902.1| PREDICTED: COUP transcription factor 2 isoform 2 [Felis catus]
gi|410960652|ref|XP_003986903.1| PREDICTED: COUP transcription factor 2 isoform 3 [Felis catus]
gi|441616841|ref|XP_004088401.1| PREDICTED: COUP transcription factor 2 [Nomascus leucogenys]
gi|119622602|gb|EAX02197.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_c
[Homo sapiens]
gi|148675208|gb|EDL07155.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_a [Mus
musculus]
gi|148675209|gb|EDL07156.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_a [Mus
musculus]
gi|194385096|dbj|BAG60954.1| unnamed protein product [Homo sapiens]
gi|221045560|dbj|BAH14457.1| unnamed protein product [Homo sapiens]
gi|325495511|gb|ADZ17361.1| chicken ovalbumin upstream promoter-transcription factor II variant
3 [Homo sapiens]
gi|344238582|gb|EGV94685.1| COUP transcription factor 2 [Cricetulus griseus]
Length = 261
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 91 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 150
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L DV + ++Q +
Sbjct: 151 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDVAHVESLQEKS 188
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 189 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 246
Score = 37.4 bits (85), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 91 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 150
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 151 ALHVDSAEYSCLKAIVLFTS 170
>gi|410049651|ref|XP_003952785.1| PREDICTED: COUP transcription factor 2 [Pan troglodytes]
Length = 421
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 251 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 310
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L DV + ++Q +
Sbjct: 311 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDVAHVESLQEKS 348
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 349 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 406
Score = 37.4 bits (85), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 251 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 310
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 311 ALHVDSAEYSCLKAIVLFTS 330
>gi|355693023|gb|EHH27626.1| COUP transcription factor 2, partial [Macaca mulatta]
Length = 380
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 210 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 269
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L DV + ++Q +
Sbjct: 270 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDVAHVESLQEKS 307
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 308 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 365
Score = 37.4 bits (85), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 210 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 269
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 270 ALHVDSAEYSCLKAIVLFTS 289
>gi|346456835|dbj|BAK78983.1| COUP-TF homolog [Lethenteron camtschaticum]
Length = 408
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 86/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 238 LLRLVWSELFVLNAAQCAMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 297
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY I+AI LF T ++C L D I ++Q +
Sbjct: 298 ALHVDSAEYSCIKAIVLFTT----------------------DACGLSDAAHIESLQEKS 335
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 336 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 393
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 238 LLRLVWSELFVLNAAQCAMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 297
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY I+AI LF T
Sbjct: 298 ALHVDSAEYSCIKAIVLFTT 317
>gi|426248035|ref|XP_004017771.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 1 [Ovis aries]
gi|426248039|ref|XP_004017773.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 3 [Ovis aries]
gi|426248041|ref|XP_004017774.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 4 [Ovis aries]
gi|426248043|ref|XP_004017775.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 5 [Ovis aries]
Length = 261
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 91 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 150
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L DV + ++Q +
Sbjct: 151 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDVAHVESLQEKS 188
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 189 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 246
Score = 37.4 bits (85), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 91 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 150
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 151 ALHVDSAEYSCLKAIVLFTS 170
>gi|340729306|ref|XP_003402945.1| PREDICTED: steroid receptor seven-up, isoforms B/C-like [Bombus
terrestris]
Length = 400
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 86/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL W ELF+L +Q L + L+ + R V + + FQ + + K
Sbjct: 230 LLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLK 289
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF T ++C L DV I ++Q +
Sbjct: 290 ALHVDSAEYSCLKAIVLFTT----------------------DACGLSDVTHIESLQEKS 327
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y T YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 328 QCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIETLIRDM 385
>gi|426248037|ref|XP_004017772.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 2 [Ovis aries]
Length = 281
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 111 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 170
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L DV + ++Q +
Sbjct: 171 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDVAHVESLQEKS 208
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 209 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 266
Score = 37.0 bits (84), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 111 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 170
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 171 ALHVDSAEYSCLKAIVLFTS 190
>gi|312385998|gb|EFR30376.1| hypothetical protein AND_00091 [Anopheles darlingi]
Length = 787
Score = 77.8 bits (190), Expect = 4e-12, Method: Composition-based stats.
Identities = 62/200 (31%), Positives = 97/200 (48%), Gaps = 32/200 (16%)
Query: 65 YIRAITLFKTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIE 124
++R + F+T S + HLLL ESW+ELF+L AQ+ DLG L++S R +
Sbjct: 581 WVRCLIPFQTLSKSDQ----HLLLQESWKELFLLNFAQWSVPWDLGGLLDSPHVRDRLPQ 636
Query: 125 E------EVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSE 178
+ E+ Q +L F+ ++ D E ++A+ LF E
Sbjct: 637 QDAASQLEMKTMQEILCRFRQISPDLSELGCMKAVILFS-------------------PE 677
Query: 179 HPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELF 238
E C DV + +Q Q L +++ YP QPTRF ++ L+LP L++I S +E LF
Sbjct: 678 TSELC--DVQPVEMLQDQAQCVLAEHVRVRYPRQPTRFGRLLLLLPLLRTIRSTTIETLF 735
Query: 239 FRNIIGHNTTIKKTIWHMYK 258
F+ IG I + + MY+
Sbjct: 736 FKETIG-TVPISRLLIDMYQ 754
Score = 47.0 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 1 HLLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEE------EVIRFQSVLNEFK 54
HLLL ESW+ELF+L AQ+ DLG L++S R ++ E+ Q +L F+
Sbjct: 597 HLLLQESWKELFLLNFAQWSVPWDLGGLLDSPHVRDRLPQQDAASQLEMKTMQEILCRFR 656
Query: 55 VLNIDPYEYDYIRAITLF 72
++ D E ++A+ LF
Sbjct: 657 QISPDLSELGCMKAVILF 674
>gi|24111246|ref|NP_571258.1| COUP transcription factor 2 [Danio rerio]
gi|1311663|gb|AAA99309.1| Drosophila seven-up homolog/mammalian ARP-1 homolog [Danio rerio]
Length = 422
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 252 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 311
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L DV + ++Q +
Sbjct: 312 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDVAHVESLQEKS 349
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 350 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 407
Score = 37.4 bits (85), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 252 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 311
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 312 ALHVDSAEYSCLKAIVLFTS 331
>gi|355707891|gb|AES03097.1| nuclear receptor subfamily 2, group F, member 1 [Mustela putorius
furo]
Length = 275
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 106 LLRLTWSELFVLNAAQCSMQLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 165
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L DV + ++Q +
Sbjct: 166 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDVAHVESLQEKS 203
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 204 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 261
Score = 37.0 bits (84), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 106 LLRLTWSELFVLNAAQCSMQLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 165
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 166 ALHVDSAEYSCLKAIVLFTS 185
>gi|195571509|ref|XP_002103745.1| GD18809 [Drosophila simulans]
gi|194199672|gb|EDX13248.1| GD18809 [Drosophila simulans]
Length = 680
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 84/174 (48%), Gaps = 32/174 (18%)
Query: 92 WRELFILGLAQYLPSLDLGELVESCK--------SRHVDIEEEVIRFQSVLNEFKVLNID 143
W ELF+L +Q L + L+ + R V + + FQ + + K L++D
Sbjct: 378 WSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVD 437
Query: 144 PYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHTQIFLN 202
EY ++AI LF T ++C L DV I ++Q +Q L
Sbjct: 438 SAEYSCLKAIVLFTT----------------------DACGLSDVTHIESLQEKSQCALE 475
Query: 203 KYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
+Y T YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 476 EYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIETLIRDM 528
>gi|310703613|ref|NP_001185508.1| COUP transcription factor 2 [Taeniopygia guttata]
Length = 410
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 240 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 299
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L DV + ++Q +
Sbjct: 300 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDVAHVESLQEKS 337
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 338 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 395
Score = 37.4 bits (85), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 240 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 299
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 300 ALHVDSAEYSCLKAIVLFTS 319
>gi|45383323|ref|NP_989752.1| COUP transcription factor 2 [Gallus gallus]
gi|3913114|sp|Q90733.1|COT2_CHICK RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=COUP transcription factor II; Short=COUP-TF II;
AltName: Full=Nuclear receptor subfamily 2 group F
member 2
gi|392817|gb|AAA17733.1| orphan receptor COUP-TFII [Gallus gallus]
Length = 410
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 240 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 299
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L DV + ++Q +
Sbjct: 300 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDVAHVESLQEKS 337
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 338 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 395
Score = 37.4 bits (85), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 240 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 299
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 300 ALHVDSAEYSCLKAIVLFTS 319
>gi|190339066|gb|AAI62484.1| Nr2f2 protein [Danio rerio]
Length = 428
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 258 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 317
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L DV + ++Q +
Sbjct: 318 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDVAHVESLQEKS 355
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 356 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 413
Score = 37.4 bits (85), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 258 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 317
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 318 ALHVDSAEYSCLKAIVLFTS 337
>gi|395502499|ref|XP_003755617.1| PREDICTED: COUP transcription factor 2 isoform 3 [Sarcophilus
harrisii]
Length = 418
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 248 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 307
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L DV + ++Q +
Sbjct: 308 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDVAHVESLQEKS 345
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 346 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 403
Score = 37.0 bits (84), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 248 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 307
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 308 ALHVDSAEYSCLKAIVLFTS 327
>gi|344265387|ref|XP_003404766.1| PREDICTED: hypothetical protein LOC100660824 [Loxodonta africana]
Length = 1396
Score = 77.8 bits (190), Expect = 5e-12, Method: Composition-based stats.
Identities = 54/179 (30%), Positives = 86/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + K
Sbjct: 1224 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQGEKLK 1283
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L D I ++Q +
Sbjct: 1284 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDAAHIESLQEKS 1321
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 1322 QCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 1379
>gi|197129927|gb|ACH46425.1| putative nuclear receptor subfamily 2 group F member 2 [Taeniopygia
guttata]
Length = 410
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 240 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 299
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L DV + ++Q +
Sbjct: 300 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDVAHVESLQEKS 337
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 338 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 395
Score = 37.4 bits (85), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 240 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 299
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 300 ALHVDSAEYSCLKAIVLFTS 319
>gi|380796215|gb|AFE69983.1| COUP transcription factor 1, partial [Macaca mulatta]
Length = 383
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 211 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 270
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L DV + ++Q +
Sbjct: 271 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDVAHVESLQEKS 308
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 309 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 366
Score = 37.0 bits (84), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 211 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 270
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 271 ALHVDSAEYSCLKAIVLFTS 290
>gi|301773902|ref|XP_002922374.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Ailuropoda
melanoleuca]
Length = 483
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 92/182 (50%), Gaps = 30/182 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIRF--------QSVLNEF 137
+LL E+W ELF+LG Q+ LD L+ + ++ + + Q ++ F
Sbjct: 324 ILLEEAWSELFLLGAIQWSLPLDSCPLLAAPEASAAGSSQGQLALASAESRILQETISRF 383
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ L +D E+ ++A+ LFK E + + G EH + A+Q +
Sbjct: 384 RALAVDATEFACLKALVLFKP----ETRGLK-------GPEH----------VEALQDQS 422
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ L+++ +PSQP RF K+ L+LP L+ I S +E LFFR IG NT ++K + M+
Sbjct: 423 QVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITSERVELLFFRKTIG-NTPMEKLLCDMF 481
Query: 258 KN 259
KN
Sbjct: 482 KN 483
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR--------FQSVLNEF 53
+LL E+W ELF+LG Q+ LD L+ + ++ + + Q ++ F
Sbjct: 324 ILLEEAWSELFLLGAIQWSLPLDSCPLLAAPEASAAGSSQGQLALASAESRILQETISRF 383
Query: 54 KVLNIDPYEYDYIRAITLFK 73
+ L +D E+ ++A+ LFK
Sbjct: 384 RALAVDATEFACLKALVLFK 403
>gi|148694040|gb|EDL25987.1| nuclear receptor subfamily 2, group E, member 3, isoform CRA_a [Mus
musculus]
gi|148694041|gb|EDL25988.1| nuclear receptor subfamily 2, group E, member 3, isoform CRA_a [Mus
musculus]
Length = 322
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 91/181 (50%), Gaps = 30/181 (16%)
Query: 86 LLLAESWRELFILGLAQY------LPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKV 139
+LL E+W ELF+LG Q+ P L E S + R E Q ++ F+
Sbjct: 165 ILLEEAWNELFLLGAIQWSLPLDSCPLLAPPEASGSSQGRLALASAETRFLQETISRFRA 224
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHTQ 198
L +DP E+ ++A+ LFK PE+ L+D + A+Q +Q
Sbjct: 225 LAVDPTEFACLKALVLFK----------------------PETRGLKDPEHVEALQDQSQ 262
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 258
+ L+++ +PSQP RF K+ L+LP L+ + + +E LFFR IG NT ++K + M+K
Sbjct: 263 VMLSQHSKAHHPSQPVRFGKLLLLLPSLRFLTAERIELLFFRKTIG-NTPMEKLLCDMFK 321
Query: 259 N 259
N
Sbjct: 322 N 322
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 2 LLLAESWRELFILGLAQY------LPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKV 55
+LL E+W ELF+LG Q+ P L E S + R E Q ++ F+
Sbjct: 165 ILLEEAWNELFLLGAIQWSLPLDSCPLLAPPEASGSSQGRLALASAETRFLQETISRFRA 224
Query: 56 LNIDPYEYDYIRAITLFK 73
L +DP E+ ++A+ LFK
Sbjct: 225 LAVDPTEFACLKALVLFK 242
>gi|383855696|ref|XP_003703346.1| PREDICTED: steroid receptor seven-up, isoforms B/C-like [Megachile
rotundata]
Length = 394
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 84/174 (48%), Gaps = 32/174 (18%)
Query: 92 WRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFKVLNID 143
W ELF+L +Q L + L+ + R V + + FQ + + K L++D
Sbjct: 229 WSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVD 288
Query: 144 PYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHTQIFLN 202
EY ++AI LF T ++C L DV I ++Q +Q L
Sbjct: 289 SAEYSCLKAIVLFTT----------------------DACGLSDVAHIESLQEKSQCALE 326
Query: 203 KYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
+Y T YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 327 EYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIETLIRDM 379
>gi|21744271|gb|AAM76194.1| RE08410p [Drosophila melanogaster]
gi|220947910|gb|ACL86498.1| svp-PC [synthetic construct]
gi|220957212|gb|ACL91149.1| svp-PC [synthetic construct]
Length = 543
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 84/174 (48%), Gaps = 32/174 (18%)
Query: 92 WRELFILGLAQYLPSLDLGELVESCK--------SRHVDIEEEVIRFQSVLNEFKVLNID 143
W ELF+L +Q L + L+ + R V + + FQ + + K L++D
Sbjct: 378 WSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVD 437
Query: 144 PYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHTQIFLN 202
EY ++AI LF T ++C L DV I ++Q +Q L
Sbjct: 438 SAEYSCLKAIVLFTT----------------------DACGLSDVTHIESLQEKSQCALE 475
Query: 203 KYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
+Y T YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 476 EYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIETLIRDM 528
>gi|194901808|ref|XP_001980443.1| GG18706 [Drosophila erecta]
gi|195500393|ref|XP_002097354.1| GE26169 [Drosophila yakuba]
gi|190652146|gb|EDV49401.1| GG18706 [Drosophila erecta]
gi|194183455|gb|EDW97066.1| GE26169 [Drosophila yakuba]
Length = 543
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 84/174 (48%), Gaps = 32/174 (18%)
Query: 92 WRELFILGLAQYLPSLDLGELVESCK--------SRHVDIEEEVIRFQSVLNEFKVLNID 143
W ELF+L +Q L + L+ + R V + + FQ + + K L++D
Sbjct: 378 WSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVD 437
Query: 144 PYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHTQIFLN 202
EY ++AI LF T ++C L DV I ++Q +Q L
Sbjct: 438 SAEYSCLKAIVLFTT----------------------DACGLSDVTHIESLQEKSQCALE 475
Query: 203 KYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
+Y T YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 476 EYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIETLIRDM 528
>gi|350416858|ref|XP_003491138.1| PREDICTED: steroid receptor seven-up, isoforms B/C-like, partial
[Bombus impatiens]
Length = 324
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 86/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL W ELF+L +Q L + L+ + R V + + FQ + + K
Sbjct: 154 LLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLK 213
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF T ++C L DV I ++Q +
Sbjct: 214 ALHVDSAEYSCLKAIVLFTT----------------------DACGLSDVAHIESLQEKS 251
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y T YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 252 QCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIETLIRDM 309
>gi|442618705|ref|NP_001262499.1| seven up, isoform E [Drosophila melanogaster]
gi|440217344|gb|AGB95881.1| seven up, isoform E [Drosophila melanogaster]
Length = 554
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 84/174 (48%), Gaps = 32/174 (18%)
Query: 92 WRELFILGLAQYLPSLDLGELVESCK--------SRHVDIEEEVIRFQSVLNEFKVLNID 143
W ELF+L +Q L + L+ + R V + + FQ + + K L++D
Sbjct: 378 WSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVD 437
Query: 144 PYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHTQIFLN 202
EY ++AI LF T ++C L DV I ++Q +Q L
Sbjct: 438 SAEYSCLKAIVLFTT----------------------DACGLSDVTHIESLQEKSQCALE 475
Query: 203 KYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
+Y T YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 476 EYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIETLIRDM 528
>gi|334318448|ref|XP_003340091.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 2-like
[Monodelphis domestica]
gi|395502495|ref|XP_003755615.1| PREDICTED: COUP transcription factor 2 isoform 1 [Sarcophilus
harrisii]
Length = 411
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 241 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 300
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L DV + ++Q +
Sbjct: 301 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDVAHVESLQEKS 338
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 339 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 396
Score = 37.0 bits (84), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 241 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 300
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 301 ALHVDSAEYSCLKAIVLFTS 320
>gi|24646230|ref|NP_731682.1| seven up, isoform C [Drosophila melanogaster]
gi|18447096|gb|AAL68139.1| AT29920p [Drosophila melanogaster]
gi|23171092|gb|AAF54774.2| seven up, isoform C [Drosophila melanogaster]
gi|220942234|gb|ACL83660.1| svp-PC [synthetic construct]
gi|220952448|gb|ACL88767.1| svp-PC [synthetic construct]
Length = 281
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 86/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL W ELF+L +Q L + L+ + R V + + FQ + + K
Sbjct: 111 LLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLK 170
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF T ++C L DV I ++Q +
Sbjct: 171 ALHVDSAEYSCLKAIVLFTT----------------------DACGLSDVTHIESLQEKS 208
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y T YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 209 QCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIETLIRDM 266
>gi|148234557|ref|NP_001087950.1| Nr2f2 protein [Xenopus laevis]
gi|50416274|gb|AAH78057.1| Nr2f2 protein [Xenopus laevis]
Length = 404
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 232 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 291
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF P++C L D I ++Q +
Sbjct: 292 ALHVDSAEYSCLKAIVLFT----------------------PDACGLSDAAHIESLQEKS 329
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 330 QCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 387
>gi|17737921|ref|NP_524325.1| seven up, isoform B [Drosophila melanogaster]
gi|112858|sp|P16375.1|7UP1_DROME RecName: Full=Steroid receptor seven-up, isoforms B/C; AltName:
Full=Nuclear receptor subfamily 2 group F member 3,
isoforms B/C
gi|158519|gb|AAA62770.1| seven-up protein type 1 [Drosophila melanogaster]
gi|7299588|gb|AAF54773.1| seven up, isoform B [Drosophila melanogaster]
Length = 543
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 84/174 (48%), Gaps = 32/174 (18%)
Query: 92 WRELFILGLAQYLPSLDLGELVESCK--------SRHVDIEEEVIRFQSVLNEFKVLNID 143
W ELF+L +Q L + L+ + R V + + FQ + + K L++D
Sbjct: 378 WSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVD 437
Query: 144 PYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHTQIFLN 202
EY ++AI LF T ++C L DV I ++Q +Q L
Sbjct: 438 SAEYSCLKAIVLFTT----------------------DACGLSDVTHIESLQEKSQCALE 475
Query: 203 KYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
+Y T YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 476 EYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIETLIRDM 528
>gi|149410809|ref|XP_001508281.1| PREDICTED: COUP transcription factor 2 [Ornithorhynchus anatinus]
Length = 411
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 241 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 300
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L DV + ++Q +
Sbjct: 301 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDVAHVESLQEKS 338
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 339 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 396
Score = 37.0 bits (84), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 241 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 300
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 301 ALHVDSAEYSCLKAIVLFTS 320
>gi|432861727|ref|XP_004069708.1| PREDICTED: COUP transcription factor 2-like isoform 2 [Oryzias
latipes]
Length = 423
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 253 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 312
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF T ++C L +V + ++Q +
Sbjct: 313 ALHVDSAEYSCLKAIVLFTT----------------------DACGLSNVAHVESLQEKS 350
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 351 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 408
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 253 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 312
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF T
Sbjct: 313 ALHVDSAEYSCLKAIVLFTT 332
>gi|166796001|ref|NP_001107703.1| nuclear receptor subfamily 2, group F, member 2 [Xenopus (Silurana)
tropicalis]
gi|163916021|gb|AAI57200.1| nr2f2 protein [Xenopus (Silurana) tropicalis]
Length = 408
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 238 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 297
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L DV + ++Q +
Sbjct: 298 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDVAHVESLQEKS 335
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 336 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 393
Score = 37.0 bits (84), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 238 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 297
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 298 ALHVDSAEYSCLKAIVLFTS 317
>gi|147901133|ref|NP_001080488.1| nuclear receptor subfamily 2, group F, member 2 [Xenopus laevis]
gi|27924187|gb|AAH44975.1| Nr2f2 protein [Xenopus laevis]
Length = 405
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 235 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 294
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L DV + ++Q +
Sbjct: 295 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDVAHVESLQEKS 332
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 333 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 390
Score = 37.4 bits (85), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 235 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 294
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 295 ALHVDSAEYSCLKAIVLFTS 314
>gi|14090242|dbj|BAB55582.1| seven-up alpha [Bombyx mori]
Length = 421
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 86/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL W ELF+L +Q L + L+ + R V + + FQ + + K
Sbjct: 251 LLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLK 310
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF T ++C L DV I ++Q +
Sbjct: 311 ALHVDSAEYSCLKAIVLFTT----------------------DACGLSDVTHIESLQEKS 348
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y T YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 349 QCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIETLIRDM 406
>gi|156545912|ref|XP_001606899.1| PREDICTED: protein tailless [Nasonia vitripennis]
Length = 395
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 81/164 (49%), Gaps = 8/164 (4%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLNIDPYE 146
L+ SWR+LF+L AQY P++D L+ + + + EV RF+ VL + +D E
Sbjct: 222 LVENSWRDLFVLSAAQYAPTMDPTSLIPPGPNS-LAMSIEVSRFREVLMSLHTMALDSQE 280
Query: 147 YDYIRAITLFKTVIEDE---VKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNK 203
Y IR++ L+K +E+ S S G S LRDV +I ++ Q L
Sbjct: 281 YACIRSVVLYKAGLENSEIVPSSRSSDGSMSPGC----SKLRDVHSIMKMKDAAQAALCT 336
Query: 204 YIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNT 247
+ ++ KI L++P LK I + +EELFFR IG T
Sbjct: 337 KVDVSNAVGAVKYSKIVLLIPMLKHISAHSIEELFFRKTIGDGT 380
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLNIDPYE 62
L+ SWR+LF+L AQY P++D L+ + + + EV RF+ VL + +D E
Sbjct: 222 LVENSWRDLFVLSAAQYAPTMDPTSLIPPGPNS-LAMSIEVSRFREVLMSLHTMALDSQE 280
Query: 63 YDYIRAITLFKTAF 76
Y IR++ L+K
Sbjct: 281 YACIRSVVLYKAGL 294
>gi|432861725|ref|XP_004069707.1| PREDICTED: COUP transcription factor 2-like isoform 1 [Oryzias
latipes]
Length = 417
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 247 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 306
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF T ++C L +V + ++Q +
Sbjct: 307 ALHVDSAEYSCLKAIVLFTT----------------------DACGLSNVAHVESLQEKS 344
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 345 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 402
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 247 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 306
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF T
Sbjct: 307 ALHVDSAEYSCLKAIVLFTT 326
>gi|328791488|ref|XP_392402.3| PREDICTED: steroid receptor seven-up, isoforms B/C, partial [Apis
mellifera]
Length = 344
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 86/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL W ELF+L +Q L + L+ + R V + + FQ + + K
Sbjct: 174 LLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLK 233
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF T ++C L DV I ++Q +
Sbjct: 234 ALHVDSAEYSCLKAIVLFTT----------------------DACGLSDVAHIESLQEKS 271
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y T YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 272 QCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIETLIRDM 329
>gi|7305323|ref|NP_038736.1| photoreceptor-specific nuclear receptor [Mus musculus]
gi|10720145|sp|Q9QXZ7.1|NR2E3_MOUSE RecName: Full=Photoreceptor-specific nuclear receptor; AltName:
Full=Nuclear receptor subfamily 2 group E member 3;
AltName: Full=Retina-specific nuclear receptor
gi|6651227|gb|AAF22228.1|AF148129_1 nuclear receptor [Mus musculus]
gi|7770295|gb|AAF69682.1|AF204053_1 photoreceptor specific nuclear receptor [Mus musculus]
gi|17028410|gb|AAH17521.1| Nuclear receptor subfamily 2, group E, member 3 [Mus musculus]
gi|26343545|dbj|BAC35429.1| unnamed protein product [Mus musculus]
gi|148694043|gb|EDL25990.1| nuclear receptor subfamily 2, group E, member 3, isoform CRA_c [Mus
musculus]
Length = 395
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 91/181 (50%), Gaps = 30/181 (16%)
Query: 86 LLLAESWRELFILGLAQY------LPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKV 139
+LL E+W ELF+LG Q+ P L E S + R E Q ++ F+
Sbjct: 238 ILLEEAWNELFLLGAIQWSLPLDSCPLLAPPEASGSSQGRLALASAETRFLQETISRFRA 297
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHTQ 198
L +DP E+ ++A+ LFK PE+ L+D + A+Q +Q
Sbjct: 298 LAVDPTEFACLKALVLFK----------------------PETRGLKDPEHVEALQDQSQ 335
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 258
+ L+++ +PSQP RF K+ L+LP L+ + + +E LFFR IG NT ++K + M+K
Sbjct: 336 VMLSQHSKAHHPSQPVRFGKLLLLLPSLRFLTAERIELLFFRKTIG-NTPMEKLLCDMFK 394
Query: 259 N 259
N
Sbjct: 395 N 395
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 2 LLLAESWRELFILGLAQY------LPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKV 55
+LL E+W ELF+LG Q+ P L E S + R E Q ++ F+
Sbjct: 238 ILLEEAWNELFLLGAIQWSLPLDSCPLLAPPEASGSSQGRLALASAETRFLQETISRFRA 297
Query: 56 LNIDPYEYDYIRAITLFK 73
L +DP E+ ++A+ LFK
Sbjct: 298 LAVDPTEFACLKALVLFK 315
>gi|403182505|gb|EAT46025.2| AAEL002765-PA, partial [Aedes aegypti]
Length = 274
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 86/179 (48%), Gaps = 31/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL W ELF+L +Q L + L+ + R V + + FQ + + K
Sbjct: 103 LLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLK 162
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF T ++C L DV I ++Q +
Sbjct: 163 ALHVDSAEYSCLKAIVLFTTA---------------------DACGLSDVAHIESLQEKS 201
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 202 QCALEEYCRSQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIETLIRDM 259
Score = 37.4 bits (85), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL W ELF+L +Q L + L+ + R V + + FQ + + K
Sbjct: 103 LLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLK 162
Query: 55 VLNIDPYEYDYIRAITLFKTA 75
L++D EY ++AI LF TA
Sbjct: 163 ALHVDSAEYSCLKAIVLFTTA 183
>gi|195055334|ref|XP_001994574.1| GH17319 [Drosophila grimshawi]
gi|193892337|gb|EDV91203.1| GH17319 [Drosophila grimshawi]
Length = 542
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 83/174 (47%), Gaps = 32/174 (18%)
Query: 92 WRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFKVLNID 143
W ELF+L +Q L + L+ + R V + + FQ + + K L++D
Sbjct: 377 WSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVD 436
Query: 144 PYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHTQIFLN 202
EY ++AI LF T ++C L DV I +Q +Q L
Sbjct: 437 SAEYSCLKAIVLFTT----------------------DACGLSDVQHIETLQEKSQCALE 474
Query: 203 KYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
+Y T YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 475 EYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIETLIRDM 527
>gi|1703646|gb|AAB37686.1| xCOUP-TF-B=proposed retinoid receptor-mediated transcriptional
activation negative regulator [Xenopus, stage 17
embryos, Peptide, 405 aa]
Length = 405
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L + R V + + FQ + + K
Sbjct: 235 LLRLTWSELFVLNAAQCSMPLHVAPLSAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 294
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L DV + ++Q +
Sbjct: 295 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDVAHVESLQEKS 332
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 333 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 390
>gi|391338722|ref|XP_003743704.1| PREDICTED: steroid receptor seven-up, isoforms B/C-like
[Metaseiulus occidentalis]
Length = 394
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 85/179 (47%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES--------CKSRHVDIEEEVIRFQSVLNEFK 138
LL ++W ELF+L +Q L + L+ + R V + + FQ + + K
Sbjct: 225 LLRQAWSELFVLNASQCSMPLHVATLLAASGLHAAPMAADRVVAFMDHIRIFQEQVEKLK 284
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L+ID EY ++AI LF T ++C L DV + ++Q T
Sbjct: 285 ALHIDGPEYSCLKAIVLFTT----------------------DACGLSDVTQVESLQEKT 322
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y YP QP+RF K+ L LP L+++ S +E LFF ++G T+I+ I M
Sbjct: 323 QSSLEEYCRAQYPQQPSRFGKLLLRLPSLRTVSSQTIEHLFFVRLVG-KTSIETLIRDM 380
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------CKSRHVDIEEEVIRFQSVLNEFK 54
LL ++W ELF+L +Q L + L+ + R V + + FQ + + K
Sbjct: 225 LLRQAWSELFVLNASQCSMPLHVATLLAASGLHAAPMAADRVVAFMDHIRIFQEQVEKLK 284
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L+ID EY ++AI LF T
Sbjct: 285 ALHIDGPEYSCLKAIVLFTT 304
>gi|20589472|ref|NP_571255.1| nuclear receptor subfamily 2 group F member 1-A [Danio rerio]
gi|6094377|sp|Q06725.1|N2F1A_DANRE RecName: Full=Nuclear receptor subfamily 2 group F member 1-A;
AltName: Full=COUP transcription factor 1-A;
Short=COUP-TFalpha-A; Short=zCOUP-TFI; AltName:
Full=Seven-up related 44; Short=Svp[44]; Short=zSvp[44];
AltName: Full=Steroid receptor homolog SVP 44
gi|296419|emb|CAA49780.1| svp 44 [Danio rerio]
gi|45219746|gb|AAH66671.1| Nuclear receptor subfamily 2, group F, member 1a [Danio rerio]
Length = 411
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 241 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 300
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY I+AI LF + ++C L D I ++Q +
Sbjct: 301 ALHVDSAEYSCIKAIVLFTS----------------------DACGLSDAAHIESLQEKS 338
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 339 QCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 396
Score = 38.1 bits (87), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 241 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 300
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY I+AI LF +
Sbjct: 301 ALHVDSAEYSCIKAIVLFTS 320
>gi|34194058|gb|AAH56574.1| Nuclear receptor subfamily 2, group F, member 1a [Danio rerio]
Length = 410
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 240 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 299
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY I+AI LF + ++C L D I ++Q +
Sbjct: 300 ALHVDSAEYSCIKAIVLFTS----------------------DACGLSDAAHIESLQEKS 337
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 338 QCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 395
Score = 38.1 bits (87), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 240 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 299
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY I+AI LF +
Sbjct: 300 ALHVDSAEYSCIKAIVLFTS 319
>gi|147900283|ref|NP_001083835.1| nuclear receptor subfamily 2, group F, member 1 [Xenopus laevis]
gi|5353742|gb|AAD42224.1|AF157558_1 COUP transcription factor 1 [Xenopus laevis]
gi|213623636|gb|AAI70009.1| COUP transcription factor 1 [Xenopus laevis]
gi|213626739|gb|AAI70011.1| COUP transcription factor 1 [Xenopus laevis]
Length = 411
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 239 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 298
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY I+AI LF + ++C L D I ++Q +
Sbjct: 299 ALHVDSAEYSCIKAIVLFTS----------------------DACGLSDAAHIESLQEKS 336
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 337 QCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 394
Score = 38.1 bits (87), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 239 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 298
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY I+AI LF +
Sbjct: 299 ALHVDSAEYSCIKAIVLFTS 318
>gi|76364250|gb|ABA41639.1| COUP transcription factor-like protein [Strongylocentrotus
purpuratus]
Length = 336
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 85/178 (47%), Gaps = 29/178 (16%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL W ELF+L +Q L + L+ + R V + + FQ + + K
Sbjct: 165 LLRMCWSELFVLNASQCSMPLHVAPLLAASGLHASPMSADRVVAFMDHIRIFQEQVEKLK 224
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
L++D EY I+AI LF +S+D L D I A+Q +Q
Sbjct: 225 ALHVDSAEYSCIKAIVLF--------------TSTDACG------LSDAAHIEALQEKSQ 264
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L +Y+ + YP+QP RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 265 CALEEYVRSQYPNQPNRFGKLLLRLPSLRTVSSHVIEQLFFVRLVG-KTPIETLIRDM 321
Score = 37.7 bits (86), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 11/112 (9%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL W ELF+L +Q L + L+ + R V + + FQ + + K
Sbjct: 165 LLRMCWSELFVLNASQCSMPLHVAPLLAASGLHASPMSADRVVAFMDHIRIFQEQVEKLK 224
Query: 55 VLNIDPYEYDYIRAITLFKTAFTSRRELAGHLLLAESWRELFILGLAQYLPS 106
L++D EY I+AI LF + A H+ E+ +E L +Y+ S
Sbjct: 225 ALHVDSAEYSCIKAIVLFTSTDACGLSDAAHI---EALQEKSQCALEEYVRS 273
>gi|444519103|gb|ELV12583.1| COUP transcription factor 1 [Tupaia chinensis]
Length = 216
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 44 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 103
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L D I ++Q +
Sbjct: 104 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDAAHIESLQEKS 141
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 142 QCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 199
Score = 37.4 bits (85), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 44 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 103
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 104 ALHVDSAEYSCLKAIVLFTS 123
>gi|354499555|ref|XP_003511874.1| PREDICTED: COUP transcription factor 1-like [Cricetulus griseus]
Length = 295
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 123 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 182
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L D I ++Q +
Sbjct: 183 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDAAHIESLQEKS 220
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 221 QCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 278
Score = 37.0 bits (84), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 123 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 182
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 183 ALHVDSAEYSCLKAIVLFTS 202
>gi|431907899|gb|ELK11506.1| COUP transcription factor 1 [Pteropus alecto]
Length = 263
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 91 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 150
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L D I ++Q +
Sbjct: 151 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDAAHIESLQEKS 188
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 189 QCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 246
Score = 37.4 bits (85), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 91 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 150
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 151 ALHVDSAEYSCLKAIVLFTS 170
>gi|355691480|gb|EHH26665.1| COUP transcription factor 1, partial [Macaca mulatta]
Length = 270
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 98 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 157
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L D I ++Q +
Sbjct: 158 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDAAHIESLQEKS 195
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 196 QCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 253
Score = 37.0 bits (84), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 98 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 157
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 158 ALHVDSAEYSCLKAIVLFTS 177
>gi|47211605|emb|CAF91926.1| unnamed protein product [Tetraodon nigroviridis]
Length = 267
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 97 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 156
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L D I ++Q +
Sbjct: 157 TLHVDSAEYSCLKAIVLFTS----------------------DACGLSDAAHIESLQEKS 194
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 195 QCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 252
Score = 37.0 bits (84), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 97 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 156
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 157 TLHVDSAEYSCLKAIVLFTS 176
>gi|84617148|emb|CAH59197.1| seven-up protein [Cupiennius salei]
Length = 353
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 85/179 (47%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL W ELF+L +Q L + L+ + R V + + FQ + + K
Sbjct: 183 LLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLK 242
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L +D EY ++AI LF T ++C L DV I ++Q +
Sbjct: 243 ALQVDAAEYSCLKAIVLFTT----------------------DACGLSDVAHIESLQEKS 280
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y T YP++PTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 281 QCALEEYCRTQYPNRPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIETLIRDM 338
>gi|347968053|ref|XP_312394.4| AGAP002544-PA [Anopheles gambiae str. PEST]
gi|333468184|gb|EAA07520.4| AGAP002544-PA [Anopheles gambiae str. PEST]
Length = 515
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 86/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL W ELF+L +Q L + L+ + R V + + FQ + + K
Sbjct: 345 LLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLK 404
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF T ++C L DV I ++Q +
Sbjct: 405 ALHVDSAEYSCLKAIVLFTT----------------------DACGLSDVAHIESLQEKS 442
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 443 QCALEEYCRSQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIETLIRDM 500
>gi|301785285|ref|XP_002928058.1| PREDICTED: COUP transcription factor 1-like [Ailuropoda
melanoleuca]
Length = 414
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 242 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 301
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L D I ++Q +
Sbjct: 302 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDAAHIESLQEKS 339
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 340 QCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 397
Score = 37.0 bits (84), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 242 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 301
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 302 ALHVDSAEYSCLKAIVLFTS 321
>gi|157109777|ref|XP_001650818.1| Dissatisfaction (Dsf) [Aedes aegypti]
gi|108878920|gb|EAT43145.1| AAEL005381-PA, partial [Aedes aegypti]
Length = 723
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 99/199 (49%), Gaps = 31/199 (15%)
Query: 65 YIRAITLFKTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESCKSRH---- 120
++R + F+T + + HLLL ESW+ELF+L AQ+ DL L+ES + R
Sbjct: 528 WVRCLIPFQTLSKNDQ----HLLLQESWKELFLLNFAQWSVPWDLSALLESPQVRDRIPH 583
Query: 121 -VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEH 179
+ E+ Q +L F+ ++ D E ++A+ LF S + SE
Sbjct: 584 DPATQMEMKTMQEILCRFRQISPDLSELGCMKAVILF----------------SPETSE- 626
Query: 180 PESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFF 239
L DV + +Q Q L+ ++ YP QPTRF ++ L+LP L++I S+ +E LFF
Sbjct: 627 ----LCDVQPVEMLQDQAQCVLSDHVRVRYPRQPTRFGRLLLLLPLLRTIRSVTIETLFF 682
Query: 240 RNIIGHNTTIKKTIWHMYK 258
+ IG I + + MY+
Sbjct: 683 KETIG-TVPISRLLIDMYQ 700
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 1 HLLLAESWRELFILGLAQYLPSLDLGELVESCKSR-----HVDIEEEVIRFQSVLNEFKV 55
HLLL ESW+ELF+L AQ+ DL L+ES + R + E+ Q +L F+
Sbjct: 544 HLLLQESWKELFLLNFAQWSVPWDLSALLESPQVRDRIPHDPATQMEMKTMQEILCRFRQ 603
Query: 56 LNIDPYEYDYIRAITLF 72
++ D E ++A+ LF
Sbjct: 604 ISPDLSELGCMKAVILF 620
>gi|335283229|ref|XP_003354263.1| PREDICTED: COUP transcription factor 1-like isoform 3 [Sus scrofa]
gi|344253194|gb|EGW09298.1| COUP transcription factor 1 [Cricetulus griseus]
Length = 263
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 91 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 150
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L D I ++Q +
Sbjct: 151 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDAAHIESLQEKS 188
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 189 QCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 246
Score = 37.4 bits (85), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 91 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 150
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 151 ALHVDSAEYSCLKAIVLFTS 170
>gi|390335482|ref|XP_003724162.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A isoform
1 [Strongylocentrotus purpuratus]
gi|390335484|ref|XP_782295.3| PREDICTED: nuclear receptor subfamily 2 group F member 1-A isoform
2 [Strongylocentrotus purpuratus]
Length = 472
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 85/179 (47%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL W ELF+L +Q L + L+ + R V + + FQ + + K
Sbjct: 302 LLRMCWSELFVLNASQCSMPLHVAPLLAASGLHASPMSADRVVAFMDHIRIFQEQVEKLK 361
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY I+AI LF + ++C L D I A+Q +
Sbjct: 362 ALHVDSAEYSCIKAIVLFTS----------------------DACGLSDAAHIEALQEKS 399
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QP RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 400 QCALEEYVRSQYPNQPNRFGKLLLRLPSLRTVSSHVIEQLFFVRLVG-KTPIETLIRDM 457
>gi|326926346|ref|XP_003209363.1| PREDICTED: LOW QUALITY PROTEIN: photoreceptor-specific nuclear
receptor-like [Meleagris gallopavo]
Length = 395
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 89/178 (50%), Gaps = 27/178 (15%)
Query: 86 LLLAESWRELFILGLAQY---LPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLNI 142
+LL E+W ELF+L Q+ L S L + E + + +V Q L FK L +
Sbjct: 241 ILLEEAWSELFLLCAIQWSMPLESCPLLAVPEPSPGKLLPAAVDVRALQETLGRFKALAV 300
Query: 143 DPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHTQIFL 201
DP E+ ++A+ LFK PE+ L+D + +Q +Q+ L
Sbjct: 301 DPTEFACMKAVVLFK----------------------PETRGLKDPEQVENLQDQSQVML 338
Query: 202 NKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKN 259
++ + YP QP RF K+ L+LP L+ + S +E LFFR IG NT ++K + M+KN
Sbjct: 339 GQHNRSHYPGQPVRFGKLLLLLPALRFLSSERVELLFFRRTIG-NTPMEKLLCDMFKN 395
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 2 LLLAESWRELFILGLAQY---LPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLNI 58
+LL E+W ELF+L Q+ L S L + E + + +V Q L FK L +
Sbjct: 241 ILLEEAWSELFLLCAIQWSMPLESCPLLAVPEPSPGKLLPAAVDVRALQETLGRFKALAV 300
Query: 59 DPYEYDYIRAITLFK 73
DP E+ ++A+ LFK
Sbjct: 301 DPTEFACMKAVVLFK 315
>gi|55925486|ref|NP_956886.1| nuclear receptor subfamily 2 group F member 1-B [Danio rerio]
gi|82202654|sp|Q6PH18.1|N2F1B_DANRE RecName: Full=Nuclear receptor subfamily 2 group F member 1-B;
AltName: Full=COUP transcription factor 1-B;
Short=COUP-TFalpha-B
gi|34785135|gb|AAH56748.1| Nuclear receptor subfamily 2, group F, member 1b [Danio rerio]
Length = 389
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 84/179 (46%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 219 LLRLTWSELFVLNAAQSSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRFFQEQVEKLK 278
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L +D EY +AI LF + ++C L D+ I +Q +
Sbjct: 279 ALQVDSAEYSCAKAIVLFTS----------------------DACGLSDIPHIEGLQEKS 316
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+ + S V+E+LFF ++G T I+ I M
Sbjct: 317 QCALEEYVRSQYPNQPTRFGKLLLRLPALRMVSSSVIEQLFFVRLVG-KTPIETLIRDM 374
>gi|41351197|gb|AAH65651.1| Nr2f1b protein [Danio rerio]
Length = 388
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 84/179 (46%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 218 LLRLTWSELFVLNAAQSSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRFFQEQVEKLK 277
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L +D EY +AI LF + ++C L D+ I +Q +
Sbjct: 278 ALQVDSAEYSCAKAIVLFTS----------------------DACGLSDIPHIEGLQEKS 315
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+ + S V+E+LFF ++G T I+ I M
Sbjct: 316 QCALEEYVRSQYPNQPTRFGKLLLRLPALRMVSSSVIEQLFFVRLVG-KTPIETLIRDM 373
>gi|281346029|gb|EFB21613.1| hypothetical protein PANDA_017952 [Ailuropoda melanoleuca]
Length = 358
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 186 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 245
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L D I ++Q +
Sbjct: 246 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDAAHIESLQEKS 283
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 284 QCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 341
Score = 37.0 bits (84), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 12/112 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 186 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 245
Query: 55 VLNIDPYEYDYIRAITLFKTAFTSRRELAGHLLLAESWRELFILGLAQYLPS 106
L++D EY ++AI LF + + A H+ ES +E L +Y+ S
Sbjct: 246 ALHVDSAEYSCLKAIVLFTSDACGLSD-AAHI---ESLQEKSQCALEEYVRS 293
>gi|335283227|ref|XP_003354262.1| PREDICTED: COUP transcription factor 1-like isoform 2 [Sus scrofa]
gi|426349454|ref|XP_004042315.1| PREDICTED: COUP transcription factor 1 [Gorilla gorilla gorilla]
gi|151554252|gb|AAI49439.1| NR2F1 protein [Bos taurus]
Length = 273
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 101 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 160
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L D I ++Q +
Sbjct: 161 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDAAHIESLQEKS 198
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 199 QCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 256
Score = 37.0 bits (84), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 101 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 160
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 161 ALHVDSAEYSCLKAIVLFTS 180
>gi|325495565|gb|ADZ17388.1| chicken ovalbumin upstream promoter-transcription factor I [Homo
sapiens]
Length = 372
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 200 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 259
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L D I ++Q +
Sbjct: 260 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDAAHIESLQEKS 297
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 298 QCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 355
Score = 37.0 bits (84), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 200 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 259
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 260 ALHVDSAEYSCLKAIVLFTS 279
>gi|148705178|gb|EDL37125.1| nuclear receptor subfamily 2, group F, member 1 [Mus musculus]
Length = 416
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 244 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 303
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L D I ++Q +
Sbjct: 304 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDAAHIESLQEKS 341
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 342 QCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 399
Score = 37.0 bits (84), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 244 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 303
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 304 ALHVDSAEYSCLKAIVLFTS 323
>gi|390331720|ref|XP_780706.3| PREDICTED: photoreceptor-specific nuclear receptor-like
[Strongylocentrotus purpuratus]
Length = 443
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 88/180 (48%), Gaps = 29/180 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELV-----ESCKSRHVDIEEEVIRFQSVLNEFKVL 140
+LL E+W ELF+L Q+ LD L+ +S + ++ Q +++ F+ L
Sbjct: 287 ILLEEAWSELFLLCALQWSMPLDSCPLLTGLHEQSQTDKAATCVSDIRLLQEIMSRFRGL 346
Query: 141 NIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHTQI 199
+DP E+ ++AI LFK PE+ L+D + +Q +
Sbjct: 347 RVDPAEFACLKAIVLFK----------------------PETRGLKDPQQVEILQDQAHM 384
Query: 200 FLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKN 259
L ++I P+Q RF ++ L+LP L+ + S +E LFFR IG +T +++ + M+KN
Sbjct: 385 MLTQHIRAHQPAQTARFGRMLLLLPSLRFVTSDQVERLFFRCTIG-DTPMERLLCDMFKN 443
Score = 43.5 bits (101), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELV-----ESCKSRHVDIEEEVIRFQSVLNEFKVL 56
+LL E+W ELF+L Q+ LD L+ +S + ++ Q +++ F+ L
Sbjct: 287 ILLEEAWSELFLLCALQWSMPLDSCPLLTGLHEQSQTDKAATCVSDIRLLQEIMSRFRGL 346
Query: 57 NIDPYEYDYIRAITLFK 73
+DP E+ ++AI LFK
Sbjct: 347 RVDPAEFACLKAIVLFK 363
>gi|170031169|ref|XP_001843459.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167869235|gb|EDS32618.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 697
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 97/199 (48%), Gaps = 31/199 (15%)
Query: 65 YIRAITLFKTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESCKSRH---- 120
++R + F+T + + HLLL ESW+ELF+L AQ+ DL L+ES R
Sbjct: 497 WVRCLIPFQTLSKNDQ----HLLLQESWKELFLLNFAQWSVPWDLSALLESPPVRDRLPQ 552
Query: 121 -VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEH 179
+ E+ Q +L F+ ++ D E ++A+ LF S + SE
Sbjct: 553 DPATQMEMKTMQEILCRFRQISPDLSELGCMKAVILF----------------SPETSE- 595
Query: 180 PESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFF 239
L DV + +Q Q L+ ++ YP QPTRF ++ L+LP L++I S +E LFF
Sbjct: 596 ----LCDVQPVEMLQDQAQCVLSDHVRVRYPRQPTRFGRLLLLLPLLRTIRSTTIETLFF 651
Query: 240 RNIIGHNTTIKKTIWHMYK 258
+ IG I + + MY+
Sbjct: 652 KETIG-TVPISRLLIDMYQ 669
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 1 HLLLAESWRELFILGLAQYLPSLDLGELVESCKSR-----HVDIEEEVIRFQSVLNEFKV 55
HLLL ESW+ELF+L AQ+ DL L+ES R + E+ Q +L F+
Sbjct: 513 HLLLQESWKELFLLNFAQWSVPWDLSALLESPPVRDRLPQDPATQMEMKTMQEILCRFRQ 572
Query: 56 LNIDPYEYDYIRAITLF 72
++ D E ++A+ LF
Sbjct: 573 ISPDLSELGCMKAVILF 589
>gi|149692277|ref|XP_001495004.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Equus
caballus]
Length = 480
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 90/183 (49%), Gaps = 32/183 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVE--------SCKSRHVDIEEEVIRFQSVLNEF 137
+LL E+W ELF+LG Q+ LD L+ S + R E Q ++ F
Sbjct: 321 ILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGSSQGRLALASAETRILQETISRF 380
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGH 196
+ L +DP E+ ++A+ LFK PE+ L+D + A+Q
Sbjct: 381 RALAVDPTEFACMKALVLFK----------------------PETRGLKDPEHVEALQDQ 418
Query: 197 TQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
+Q+ L+++ +PSQP RF K+ L+L L+ I S +E LFFR IG NT ++K + M
Sbjct: 419 SQVMLSQHSKAHHPSQPVRFGKLLLLLSSLRFITSERVELLFFRKTIG-NTPMEKLLCDM 477
Query: 257 YKN 259
+K
Sbjct: 478 FKT 480
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVE--------SCKSRHVDIEEEVIRFQSVLNEF 53
+LL E+W ELF+LG Q+ LD L+ S + R E Q ++ F
Sbjct: 321 ILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGSSQGRLALASAETRILQETISRF 380
Query: 54 KVLNIDPYEYDYIRAITLFK 73
+ L +DP E+ ++A+ LFK
Sbjct: 381 RALAVDPTEFACMKALVLFK 400
>gi|325495567|gb|ADZ17389.1| chicken ovalbumin upstream promoter-transcription factor I [Homo
sapiens]
Length = 382
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 210 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 269
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L D I ++Q +
Sbjct: 270 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDAAHIESLQEKS 307
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 308 QCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 365
Score = 37.0 bits (84), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 210 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 269
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 270 ALHVDSAEYSCLKAIVLFTS 289
>gi|225581113|gb|ACN94685.1| GA21482 [Drosophila miranda]
Length = 690
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 88/179 (49%), Gaps = 29/179 (16%)
Query: 85 HLLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR-----FQSVLNEFKV 139
HLLL ESW+ELF+L LAQ+ LDL ++ES + +++E + Q +L F+
Sbjct: 524 HLLLQESWKELFLLNLAQWTIPLDLTPILESPLIKERVLQDEATQTEMKTIQEILCRFRQ 583
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHTQ 198
+ D E ++AI LF PE+ L DV + +Q Q
Sbjct: 584 ITPDGSEVGCMKAIALFA----------------------PETAGLCDVQPVEMLQDQAQ 621
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
L+ ++ Y Q TRF ++ L+LP L++I + +E LFF+ IG N I + + MY
Sbjct: 622 CILSDHVRLRYSRQATRFGRLLLLLPSLRTIRASTIEALFFKETIG-NVPIARLLRDMY 679
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 1 HLLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR-----FQSVLNEFKV 55
HLLL ESW+ELF+L LAQ+ LDL ++ES + +++E + Q +L F+
Sbjct: 524 HLLLQESWKELFLLNLAQWTIPLDLTPILESPLIKERVLQDEATQTEMKTIQEILCRFRQ 583
Query: 56 LNIDPYEYDYIRAITLF 72
+ D E ++AI LF
Sbjct: 584 ITPDGSEVGCMKAIALF 600
>gi|198475944|ref|XP_001357213.2| GA21482 [Drosophila pseudoobscura pseudoobscura]
gi|198137475|gb|EAL34282.2| GA21482 [Drosophila pseudoobscura pseudoobscura]
Length = 691
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 88/179 (49%), Gaps = 29/179 (16%)
Query: 85 HLLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR-----FQSVLNEFKV 139
HLLL ESW+ELF+L LAQ+ LDL ++ES + +++E + Q +L F+
Sbjct: 525 HLLLQESWKELFLLNLAQWTIPLDLTPILESPLIKERVLQDEATQTEMKTIQEILCRFRQ 584
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHTQ 198
+ D E ++AI LF PE+ L DV + +Q Q
Sbjct: 585 ITPDGSEVGCMKAIALFA----------------------PETAGLCDVQPVEMLQDQAQ 622
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
L+ ++ Y Q TRF ++ L+LP L++I + +E LFF+ IG N I + + MY
Sbjct: 623 CILSDHVRLRYSRQATRFGRLLLLLPSLRTIRASTIEALFFKETIG-NVPIARLLRDMY 680
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 1 HLLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR-----FQSVLNEFKV 55
HLLL ESW+ELF+L LAQ+ LDL ++ES + +++E + Q +L F+
Sbjct: 525 HLLLQESWKELFLLNLAQWTIPLDLTPILESPLIKERVLQDEATQTEMKTIQEILCRFRQ 584
Query: 56 LNIDPYEYDYIRAITLF 72
+ D E ++AI LF
Sbjct: 585 ITPDGSEVGCMKAIALF 601
>gi|449513880|ref|XP_002189105.2| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Taeniopygia guttata]
Length = 413
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 241 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 300
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L D I ++Q +
Sbjct: 301 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDAAHIESLQEKS 338
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 339 QCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 396
Score = 37.0 bits (84), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 241 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 300
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 301 ALHVDSAEYSCLKAIVLFTS 320
>gi|154147672|ref|NP_001093677.1| nuclear receptor subfamily 2, group F, member 1 [Xenopus (Silurana)
tropicalis]
gi|138519913|gb|AAI35590.1| nr2f1 protein [Xenopus (Silurana) tropicalis]
Length = 410
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 238 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 297
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L D I ++Q +
Sbjct: 298 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDAAHIESLQEKS 335
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 336 QCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 393
Score = 37.0 bits (84), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 238 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 297
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 298 ALHVDSAEYSCLKAIVLFTS 317
>gi|297294717|ref|XP_001089115.2| PREDICTED: COUP transcription factor 1 [Macaca mulatta]
Length = 560
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 388 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 447
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L D I ++Q +
Sbjct: 448 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDAAHIESLQEKS 485
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 486 QCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 543
Score = 37.0 bits (84), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 388 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 447
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 448 ALHVDSAEYSCLKAIVLFTS 467
>gi|325495563|gb|ADZ17387.1| chicken ovalbumin upstream promoter-transcription factor I [Homo
sapiens]
Length = 397
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 225 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 284
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L D I ++Q +
Sbjct: 285 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDAAHIESLQEKS 322
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 323 QCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 380
Score = 37.0 bits (84), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 225 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 284
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 285 ALHVDSAEYSCLKAIVLFTS 304
>gi|348530340|ref|XP_003452669.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Oreochromis niloticus]
Length = 410
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 240 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 299
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L D I ++Q +
Sbjct: 300 TLHVDSAEYSCLKAIVLFTS----------------------DACGLSDAAHIESLQEKS 337
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 338 QCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 395
Score = 37.0 bits (84), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 240 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 299
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 300 TLHVDSAEYSCLKAIVLFTS 319
>gi|410923623|ref|XP_003975281.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Takifugu rubripes]
Length = 411
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 241 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 300
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L D I ++Q +
Sbjct: 301 TLHVDSAEYSCLKAIVLFTS----------------------DACGLSDAAHIESLQEKS 338
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 339 QCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 396
Score = 37.0 bits (84), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 241 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 300
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 301 TLHVDSAEYSCLKAIVLFTS 320
>gi|340712958|ref|XP_003395019.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Bombus terrestris]
Length = 405
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 83/154 (53%), Gaps = 3/154 (1%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLNIDPYE 146
LL SWRELF+L AQ LP+LD L+ + + EV RF+ L F +N+D +E
Sbjct: 236 LLEFSWRELFLLAAAQILPTLDPTTLLPP-APHGLSLAVEVNRFRETLAGFHAMNLDQHE 294
Query: 147 YDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIH 206
+ IRAI LFK + D S SSS S S LRD A+A ++ Q+ L + +
Sbjct: 295 FACIRAIVLFKAGL-DSEPTPSSRSSSGSASPSVGSRLRDAAAVARLRDGAQLALGQRLS 353
Query: 207 TVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
RF K+ L+LP L+S+ + +EELFFR
Sbjct: 354 GASLGA-LRFGKLLLLLPSLRSVSTHAIEELFFR 386
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLNIDPYE 62
LL SWRELF+L AQ LP+LD L+ + + EV RF+ L F +N+D +E
Sbjct: 236 LLEFSWRELFLLAAAQILPTLDPTTLLPP-APHGLSLAVEVNRFRETLAGFHAMNLDQHE 294
Query: 63 YDYIRAITLFKTAF 76
+ IRAI LFK
Sbjct: 295 FACIRAIVLFKAGL 308
>gi|334325755|ref|XP_003340678.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
F member 1-A-like [Monodelphis domestica]
Length = 416
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 244 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 303
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L D I ++Q +
Sbjct: 304 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDAAHIESLQEKS 341
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 342 QCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 399
Score = 37.0 bits (84), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 244 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 303
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 304 ALHVDSAEYSCLKAIVLFTS 323
>gi|325495569|gb|ADZ17390.1| chicken ovalbumin upstream promoter-transcription factor I [Homo
sapiens]
Length = 398
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 226 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 285
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L D I ++Q +
Sbjct: 286 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDAAHIESLQEKS 323
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 324 QCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 381
Score = 37.0 bits (84), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 226 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 285
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 286 ALHVDSAEYSCLKAIVLFTS 305
>gi|74223617|dbj|BAE28687.1| unnamed protein product [Mus musculus]
Length = 337
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 91 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 150
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L D I ++Q +
Sbjct: 151 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDAAHIESLQEKS 188
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 189 QCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 246
>gi|345798599|ref|XP_848884.2| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1 isoform
2 [Canis lupus familiaris]
Length = 423
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 251 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 310
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L D I ++Q +
Sbjct: 311 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDAAHIESLQEKS 348
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 349 QCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 406
Score = 37.0 bits (84), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 251 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 310
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 311 ALHVDSAEYSCLKAIVLFTS 330
>gi|2500905|sp|Q60632.2|COT1_MOUSE RecName: Full=COUP transcription factor 1; Short=COUP-TF1; AltName:
Full=COUP transcription factor I; Short=COUP-TF I;
AltName: Full=Nuclear receptor subfamily 2 group F
member 1; AltName: Full=V-erbA-related protein 3;
Short=EAR-3
gi|695627|emb|CAA52231.1| COUP-TF1 [Mus musculus]
Length = 422
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 250 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 309
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L D I ++Q +
Sbjct: 310 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDAAHIESLQEKS 347
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 348 QCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 405
Score = 37.0 bits (84), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 250 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 309
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 310 ALHVDSAEYSCLKAIVLFTS 329
>gi|395511284|ref|XP_003759890.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Sarcophilus harrisii]
Length = 416
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 244 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 303
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L D I ++Q +
Sbjct: 304 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDAAHIESLQEKS 341
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 342 QCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 399
Score = 36.6 bits (83), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 244 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 303
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 304 ALHVDSAEYSCLKAIVLFTS 323
>gi|111185902|ref|NP_034281.2| COUP transcription factor 1 [Mus musculus]
gi|466468|gb|AAA19853.1| COUP-TFI [Mus musculus]
gi|80478748|gb|AAI08409.1| Nuclear receptor subfamily 2, group F, member 1 [Mus musculus]
Length = 420
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 248 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 307
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L D I ++Q +
Sbjct: 308 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDAAHIESLQEKS 345
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 346 QCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 403
Score = 37.0 bits (84), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 248 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 307
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 308 ALHVDSAEYSCLKAIVLFTS 327
>gi|380800545|gb|AFE72148.1| COUP transcription factor 1, partial [Macaca mulatta]
Length = 383
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 211 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 270
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L D I ++Q +
Sbjct: 271 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDAAHIESLQEKS 308
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 309 QCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 366
Score = 37.0 bits (84), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 211 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 270
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 271 ALHVDSAEYSCLKAIVLFTS 290
>gi|335283225|ref|XP_003354261.1| PREDICTED: COUP transcription factor 1-like isoform 1 [Sus scrofa]
Length = 422
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 250 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 309
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L D I ++Q +
Sbjct: 310 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDAAHIESLQEKS 347
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 348 QCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 405
Score = 37.0 bits (84), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 250 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 309
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 310 ALHVDSAEYSCLKAIVLFTS 329
>gi|5032173|ref|NP_005645.1| COUP transcription factor 1 [Homo sapiens]
gi|332821062|ref|XP_517657.3| PREDICTED: COUP transcription factor 1 [Pan troglodytes]
gi|402872088|ref|XP_003899969.1| PREDICTED: COUP transcription factor 1 [Papio anubis]
gi|116959|sp|P10589.1|COT1_HUMAN RecName: Full=COUP transcription factor 1; Short=COUP-TF1; AltName:
Full=COUP transcription factor I; Short=COUP-TF I;
AltName: Full=Nuclear receptor subfamily 2 group F
member 1; AltName: Full=V-erbA-related protein 3;
Short=EAR-3
gi|31067|emb|CAA31283.1| unnamed protein product [Homo sapiens]
gi|13278759|gb|AAH04154.1| Nuclear receptor subfamily 2, group F, member 1 [Homo sapiens]
gi|52790443|gb|AAH17493.1| Nuclear receptor subfamily 2, group F, member 1 [Homo sapiens]
gi|119616415|gb|EAW96009.1| nuclear receptor subfamily 2, group F, member 1, isoform CRA_b
[Homo sapiens]
gi|208966886|dbj|BAG73457.1| nuclear receptor subfamily 2, group F, member 1 [synthetic
construct]
gi|387542998|gb|AFJ72126.1| COUP transcription factor 1 [Macaca mulatta]
Length = 423
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 251 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 310
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L D I ++Q +
Sbjct: 311 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDAAHIESLQEKS 348
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 349 QCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 406
Score = 37.0 bits (84), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 251 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 310
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 311 ALHVDSAEYSCLKAIVLFTS 330
>gi|426231150|ref|XP_004023618.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1 [Ovis
aries]
Length = 457
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 285 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 344
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L D I ++Q +
Sbjct: 345 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDAAHIESLQEKS 382
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 383 QCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 440
Score = 37.0 bits (84), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 285 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 344
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 345 ALHVDSAEYSCLKAIVLFTS 364
>gi|332224991|ref|XP_003261656.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1
[Nomascus leucogenys]
Length = 423
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 251 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 310
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L D I ++Q +
Sbjct: 311 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDAAHIESLQEKS 348
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 349 QCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 406
Score = 37.0 bits (84), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 251 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 310
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 311 ALHVDSAEYSCLKAIVLFTS 330
>gi|45382987|ref|NP_989925.1| photoreceptor-specific nuclear receptor [Gallus gallus]
gi|15777197|gb|AAL05940.1| photoreceptor-specific nuclear receptor [Gallus gallus]
Length = 406
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 89/178 (50%), Gaps = 27/178 (15%)
Query: 86 LLLAESWRELFILGLAQY---LPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLNI 142
+LL E+W ELF+L Q+ L S L + E + + +V Q L FK L +
Sbjct: 252 ILLEEAWSELFLLCAIQWSMPLESCPLLAVPEPSPGKLLPAAVDVRALQETLGRFKALAV 311
Query: 143 DPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHTQIFL 201
DP E+ ++A+ LFK PE+ L+D + +Q +Q+ L
Sbjct: 312 DPTEFACMKAVVLFK----------------------PETRGLKDPEQVENLQDQSQVML 349
Query: 202 NKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKN 259
++ + YP QP RF K+ L+LP L+ + S +E LFFR IG NT ++K + M+KN
Sbjct: 350 GQHNRSHYPGQPVRFGKLLLLLPALRFLSSERVELLFFRRTIG-NTPMEKLLCDMFKN 406
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 2 LLLAESWRELFILGLAQY---LPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLNI 58
+LL E+W ELF+L Q+ L S L + E + + +V Q L FK L +
Sbjct: 252 ILLEEAWSELFLLCAIQWSMPLESCPLLAVPEPSPGKLLPAAVDVRALQETLGRFKALAV 311
Query: 59 DPYEYDYIRAITLFK 73
DP E+ ++A+ LFK
Sbjct: 312 DPTEFACMKAVVLFK 326
>gi|28461227|ref|NP_786998.1| COUP transcription factor 1 [Bos taurus]
gi|10719970|sp|Q9TTR8.1|COT1_BOVIN RecName: Full=COUP transcription factor 1; Short=COUP-TF1; AltName:
Full=COUP transcription factor I; Short=COUP-TF I;
AltName: Full=Nuclear receptor subfamily 2 group F
member 1
gi|5870336|emb|CAB55623.1| transcription factor, COUP-TFI [Bos taurus]
Length = 424
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 252 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 311
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L D I ++Q +
Sbjct: 312 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDAAHIESLQEKS 349
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 350 QCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 407
Score = 37.0 bits (84), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 252 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 311
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 312 ALHVDSAEYSCLKAIVLFTS 331
>gi|193598915|ref|XP_001944021.1| PREDICTED: steroid receptor seven-up, isoforms B/C-like
[Acyrthosiphon pisum]
Length = 446
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 85/179 (47%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL W ELF+L +Q L + L+ + R V + + FQ + + K
Sbjct: 276 LLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLK 335
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF T ++C L DV I ++Q +
Sbjct: 336 ALHVDAAEYSCLKAIVLFTT----------------------DACGLSDVAHIESLQEKS 373
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y T YP+QP RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 374 QCALEEYCRTQYPNQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIETLIRDM 431
>gi|363744735|ref|XP_003643114.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Gallus gallus]
Length = 418
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 246 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 305
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L D I ++Q +
Sbjct: 306 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDAAHIESLQEKS 343
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 344 QCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 401
Score = 37.0 bits (84), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 246 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 305
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 306 ALHVDSAEYSCLKAIVLFTS 325
>gi|30140|emb|CAA34277.1| COUP-TF [Homo sapiens]
gi|226405|prf||1510304A COUP transcription factor
Length = 418
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 246 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 305
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L D I ++Q +
Sbjct: 306 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDAAHIESLQEKS 343
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 344 QCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 401
Score = 36.6 bits (83), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 246 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 305
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 306 ALHVDSAEYSCLKAIVLFTS 325
>gi|84181453|gb|ABC55065.1| orphan nuclear receptor Tll [Nasonia vitripennis]
Length = 368
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 80/164 (48%), Gaps = 8/164 (4%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLNIDPYE 146
L+ SWR+ F+L AQY P++D L+ + + + EV RF+ VL + +D E
Sbjct: 195 LVENSWRDPFVLSAAQYAPTMDPTSLIPPGPNS-LAMSIEVSRFREVLMSLHTMALDSQE 253
Query: 147 YDYIRAITLFKTVIEDE---VKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNK 203
Y IR++ L+K +E+ S S G S LRDV +I ++ Q L
Sbjct: 254 YACIRSVVLYKAGLENSEIVPSSRSSDGSMSPGC----SKLRDVHSIMKMKDAAQAALCT 309
Query: 204 YIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNT 247
+ ++ KI L++P LK I + +EELFFR IG T
Sbjct: 310 KVDVSNAVGAVKYSKIVLLIPMLKHISAHSIEELFFRKTIGDGT 353
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLNIDPYE 62
L+ SWR+ F+L AQY P++D L+ + + + EV RF+ VL + +D E
Sbjct: 195 LVENSWRDPFVLSAAQYAPTMDPTSLIPPGPNS-LAMSIEVSRFREVLMSLHTMALDSQE 253
Query: 63 YDYIRAITLFKTAF 76
Y IR++ L+K
Sbjct: 254 YACIRSVVLYKAGL 267
>gi|12484038|gb|AAG53940.1| nuclear hormone receptor [Aedes aegypti]
Length = 493
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 83/174 (47%), Gaps = 32/174 (18%)
Query: 92 WRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFKVLNID 143
W ELF+L +Q L + L+ + R V + + FQ + + K L++D
Sbjct: 328 WSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVD 387
Query: 144 PYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHTQIFLN 202
EY ++AI LF T ++C L DV I ++Q +Q L
Sbjct: 388 SAEYSCLKAIVLFTT----------------------DACGLSDVAHIESLQEKSQCALE 425
Query: 203 KYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
+Y + YP+QPTRF K+ L LP L+++ S V+E+ FF ++G T I+ I M
Sbjct: 426 EYCRSQYPNQPTRFGKLLLRLPSLRTVSSQVIEQFFFVRLVG-KTPIETLIRDM 478
>gi|158298421|ref|XP_318587.4| AGAP009575-PA [Anopheles gambiae str. PEST]
gi|157013872|gb|EAA14563.5| AGAP009575-PA [Anopheles gambiae str. PEST]
Length = 761
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 99/199 (49%), Gaps = 31/199 (15%)
Query: 65 YIRAITLFKTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESCKSRH---- 120
++R + F+T + + HLLL ESW+ELF+L AQ+ DL L++S + R
Sbjct: 559 WVRCLIPFQTLSKNDQ----HLLLQESWKELFLLNFAQWSVPWDLSGLLDSPQVRDRLPP 614
Query: 121 -VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEH 179
+ E+ Q +L F+ ++ D E ++A+ LF S + SE
Sbjct: 615 DAATQLEMKTMQEILCRFRQISPDLSELGCMKAVILF----------------SPETSE- 657
Query: 180 PESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFF 239
L DV + +Q Q L++++ YP QPTRF ++ L+LP L++I S +E LFF
Sbjct: 658 ----LCDVQPVEMLQDQAQCVLSEHVRVRYPRQPTRFGRLLLLLPLLRTIRSTTIETLFF 713
Query: 240 RNIIGHNTTIKKTIWHMYK 258
+ IG I + + MY+
Sbjct: 714 KETIG-TVPISRLLIDMYQ 731
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 1 HLLLAESWRELFILGLAQYLPSLDLGELVESCKSR-----HVDIEEEVIRFQSVLNEFKV 55
HLLL ESW+ELF+L AQ+ DL L++S + R + E+ Q +L F+
Sbjct: 575 HLLLQESWKELFLLNFAQWSVPWDLSGLLDSPQVRDRLPPDAATQLEMKTMQEILCRFRQ 634
Query: 56 LNIDPYEYDYIRAITLF 72
++ D E ++A+ LF
Sbjct: 635 ISPDLSELGCMKAVILF 651
>gi|16797870|gb|AAL29193.1|AF323680_1 nuclear receptor Amtll [Acropora millepora]
Length = 380
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 90/183 (49%), Gaps = 32/183 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD---------IEEEVIRFQSVLNE 136
+LL E WRELF+LG +Q+ L++ ++ + HVD + V Q +N+
Sbjct: 220 ILLEEGWRELFVLGASQWSMPLEIAPILAA-AGMHVDTTPPETIVDVMATVRLLQETVNK 278
Query: 137 FKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGH 196
FK N+D EY ++AI LFK S+ G + PE + + Q
Sbjct: 279 FKAANVDSTEYACLKAIVLFK--------------STACGLKDPEQ-------VESTQDQ 317
Query: 197 TQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q+ L +Y+ P+Q RF ++ L+LP L+ I + +EELFF+ IG I++ + M
Sbjct: 318 AQLMLGEYVRAQCPTQLARFGRLLLLLPALRRISTKEIEELFFKKTIGA-VPIERLLSDM 376
Query: 257 YKN 259
KN
Sbjct: 377 MKN 379
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 10/82 (12%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD---------IEEEVIRFQSVLNE 52
+LL E WRELF+LG +Q+ L++ ++ + HVD + V Q +N+
Sbjct: 220 ILLEEGWRELFVLGASQWSMPLEIAPILAA-AGMHVDTTPPETIVDVMATVRLLQETVNK 278
Query: 53 FKVLNIDPYEYDYIRAITLFKT 74
FK N+D EY ++AI LFK+
Sbjct: 279 FKAANVDSTEYACLKAIVLFKS 300
>gi|13592107|ref|NP_112392.1| nuclear receptor subfamily 2, group F, member 1 [Rattus norvegicus]
gi|506762|gb|AAA83437.1| orphan receptor COUP-TFI [Rattus norvegicus]
Length = 419
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 86/178 (48%), Gaps = 31/178 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES-------CKSRHVDIEEEVIRFQSVLNEFKV 139
LL +W ELF+L AQ L + L + R V + + FQ + + K
Sbjct: 248 LLRLTWSELFVLNAAQCSMPLHVAVLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKA 307
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHTQ 198
L++D EY ++AI LF + ++C L D I ++Q +Q
Sbjct: 308 LHVDSAEYSCLKAIVLFTS----------------------DACGLSDAAHIESLQEKSQ 345
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 346 CALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 402
>gi|28974300|gb|AAO61416.1| COUP-TF [Branchiostoma floridae]
Length = 443
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 86/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL W ELF+L +Q L + L+ + R V + + FQ + + K
Sbjct: 273 LLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 332
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L D I ++Q +
Sbjct: 333 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDAAHIDSLQEKS 370
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 371 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 428
>gi|221120884|ref|XP_002159396.1| PREDICTED: COUP transcription factor 2-like [Hydra magnipapillata]
Length = 500
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 99/214 (46%), Gaps = 40/214 (18%)
Query: 47 QSVLN--EFKVLNIDPYEYDYIRAITLFKTAFTSRR-------ELAGHL-LLAESWRELF 96
Q V N +F ++ID YE + A LF SR L + LL W+ELF
Sbjct: 282 QGVSNNPQFDFIDIDNYE---LAARLLFNAVEWSRNIPFFPNLSLTDQIALLRLCWKELF 338
Query: 97 ILGLAQYLPSLDLGELVESCKSRHVDIE------EEVIRFQSVLNEFKVLNIDPYEYDYI 150
IL +AQ +D+ L+ S + + E ++V + LN+ + +++DP E+ +
Sbjct: 339 ILNVAQCPMLIDVSHLLNSQMNIYASPEHMASFLDQVRILKEQLNKLRAMHVDPAEFACL 398
Query: 151 RAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYP 210
+AI +F SS G P+ I +Q T L YI T YP
Sbjct: 399 KAIVVF--------------SSDAPGLNDPQ-------YIETLQEKTYFALEDYIKTQYP 437
Query: 211 SQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
QPTRF K+ L P ++ I + V+E+LFF ++G
Sbjct: 438 LQPTRFGKLLLRFPSIRIISATVIEQLFFVRLVG 471
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIE------EEVIRFQSVLNEFKVL 56
LL W+ELFIL +AQ +D+ L+ S + + E ++V + LN+ + +
Sbjct: 329 LLRLCWKELFILNVAQCPMLIDVSHLLNSQMNIYASPEHMASFLDQVRILKEQLNKLRAM 388
Query: 57 NIDPYEYDYIRAITLFKT 74
++DP E+ ++AI +F +
Sbjct: 389 HVDPAEFACLKAIVVFSS 406
>gi|391329670|ref|XP_003739292.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Metaseiulus occidentalis]
Length = 201
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 87/173 (50%), Gaps = 26/173 (15%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEE-EVIRFQSVLNEFKVLNIDPY 145
LL ESWR+LF+L ++ + P +DL + + H ++ E+ Q V+ + L+ D
Sbjct: 47 LLEESWRDLFLLYMSHWSPGVDLISSLPA-AVHHDELNPIEIHYVQDVMRRLRQLSPDDT 105
Query: 146 EYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHTQIFLNKY 204
E ++AI LFK PE+ L D + +Q Q L Y
Sbjct: 106 ECSCLKAIVLFK----------------------PETMGLCDTHPVEMLQDRAQCVLGDY 143
Query: 205 IHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
+ YP QPTRF ++ L+LP L+SI ++ +E+LFF+ IG N ++K + MY
Sbjct: 144 VRERYPRQPTRFGRLLLLLPILRSISNVFIEKLFFKGTIG-NIRVEKILGEMY 195
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEE-EVIRFQSVLNEFKVLNIDPY 61
LL ESWR+LF+L ++ + P +DL + + H ++ E+ Q V+ + L+ D
Sbjct: 47 LLEESWRDLFLLYMSHWSPGVDLISSLPA-AVHHDELNPIEIHYVQDVMRRLRQLSPDDT 105
Query: 62 EYDYIRAITLFK 73
E ++AI LFK
Sbjct: 106 ECSCLKAIVLFK 117
>gi|328707384|ref|XP_001948870.2| PREDICTED: photoreceptor-specific nuclear receptor-like
[Acyrthosiphon pisum]
Length = 510
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 86/183 (46%), Gaps = 33/183 (18%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHV---------DIEEEVIRFQSVLNE 136
+LL E W ELF+L Q+ L+ L S HV + ++ L
Sbjct: 352 ILLEECWSELFLLNAVQWCLPLENNPLFN--PSDHVAAIPNGKASQVAADIRVLNETLRR 409
Query: 137 FKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGH 196
F+ +++DP E+ ++AI LF+ D R L+D I + +Q
Sbjct: 410 FRTISVDPAEFACMKAIVLFRA-------DTRG--------------LKDPIQVENLQDQ 448
Query: 197 TQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
+ L ++ +P QP RF ++ L+LP LK++P+ +E +FF+ IG N ++K + M
Sbjct: 449 AHVMLGQHTRNQHPGQPVRFGRLLLMLPLLKNVPAARIEAIFFQRTIG-NIPMEKVLCDM 507
Query: 257 YKN 259
YKN
Sbjct: 508 YKN 510
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 11/82 (13%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHV---------DIEEEVIRFQSVLNE 52
+LL E W ELF+L Q+ L+ L S HV + ++ L
Sbjct: 352 ILLEECWSELFLLNAVQWCLPLENNPLFN--PSDHVAAIPNGKASQVAADIRVLNETLRR 409
Query: 53 FKVLNIDPYEYDYIRAITLFKT 74
F+ +++DP E+ ++AI LF+
Sbjct: 410 FRTISVDPAEFACMKAIVLFRA 431
>gi|74145119|dbj|BAE27426.1| unnamed protein product [Mus musculus]
Length = 390
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 83/179 (46%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQY-LP-------SLDLGELVESCKSRHVDIEEEVIRFQSVLNEFK 138
LL SW ELF+L AQ LP + R V ++V FQ +++
Sbjct: 221 LLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLG 280
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L +D EY ++AI LF P++C L D + ++Q
Sbjct: 281 RLQVDAAEYGCLKAIALFT----------------------PDACGLSDPAHVESLQEKA 318
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q+ L +Y+ YPSQP RF ++ L LP ++++P+ ++ +LFF ++G T I+ I M
Sbjct: 319 QVALTEYVRAQYPSQPQRFGRLLLRLPAMRAVPASLISQLFFMRLVG-KTPIETLIRDM 376
>gi|157133704|ref|XP_001662973.1| tailless (tll) [Aedes aegypti]
gi|108881478|gb|EAT45703.1| AAEL003020-PA [Aedes aegypti]
Length = 397
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 87/179 (48%), Gaps = 20/179 (11%)
Query: 86 LLLAESWRELFILGLAQYLPSLDL--------------GELVESCKSRHVDIEEEVIRFQ 131
+L ESWRE FIL +AQYL ++ GE + C R VDI FQ
Sbjct: 216 ILFEESWREFFILAVAQYLLPINFNHLLVAYEYLNNNRGEPIPECIIREVDI------FQ 269
Query: 132 SVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIA 191
+L + L +D E+ Y+RA+ L+KT + E + SSS D ++++ +
Sbjct: 270 EILTQIVALRVDTNEFVYLRAVVLYKTEFDPESSISSSSSDGSDIISSTSKSIQEISTVR 329
Query: 192 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIK 250
A++ + L Y+ T P RF + +LP L+++ + +EELFFR IG +K
Sbjct: 330 ALEDGAKEALAAYVRTCRPIPAERFRLLLQLLPVLRNVSTYTIEELFFRRNIGPAPLLK 388
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 45/89 (50%), Gaps = 20/89 (22%)
Query: 2 LLLAESWRELFILGLAQYLPSLDL--------------GELVESCKSRHVDIEEEVIRFQ 47
+L ESWRE FIL +AQYL ++ GE + C R VDI FQ
Sbjct: 216 ILFEESWREFFILAVAQYLLPINFNHLLVAYEYLNNNRGEPIPECIIREVDI------FQ 269
Query: 48 SVLNEFKVLNIDPYEYDYIRAITLFKTAF 76
+L + L +D E+ Y+RA+ L+KT F
Sbjct: 270 EILTQIVALRVDTNEFVYLRAVVLYKTEF 298
>gi|195341628|ref|XP_002037408.1| GM12909 [Drosophila sechellia]
gi|194131524|gb|EDW53567.1| GM12909 [Drosophila sechellia]
Length = 241
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 75/147 (51%), Gaps = 23/147 (15%)
Query: 126 EVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDD--------GS 177
+V FQ VLN+ LNID EY+ +RAI+LF+ K S+SS++D GS
Sbjct: 98 KVHAFQEVLNQLCHLNIDSTEYECLRAISLFR-------KSPPSASSTEDLANSSILTGS 150
Query: 178 EHPESC-------LRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIP 230
P S L + +AA+ + L+ YI +PSQP RF + +L + +
Sbjct: 151 GSPNSSASAESRGLLESGKVAAMHNDARSALHNYIQRTHPSQPMRFQTLLGVLQLMHKVS 210
Query: 231 SLVLEELFFRNIIGHNTTIKKTIWHMY 257
S +EELFFR IG + TI + I MY
Sbjct: 211 SFTIEELFFRKTIG-DITIVRLISDMY 236
>gi|47216397|emb|CAG01948.1| unnamed protein product [Tetraodon nigroviridis]
Length = 426
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 93/181 (51%), Gaps = 12/181 (6%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCK--------SRHVDIEEEVIRFQSVLNEFK 138
LL SW ELFIL AQ L + L+ + R V ++V FQ +++
Sbjct: 234 LLRLSWSELFILNAAQSALPLHMAPLLAAAGFHSSPMSAERVVSFMDQVRVFQDQVDKLT 293
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES--C-LRDVIAIAAIQG 195
L +D EY ++AI LF D ++ + + ++G+ P S C L D + + ++Q
Sbjct: 294 RLQVDSAEYSCLKAIALFSPAHHDSLRKLPTLAQLNNGATLPPSDACGLTDPVHVESLQE 353
Query: 196 HTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWH 255
Q+ L +Y YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+ I
Sbjct: 354 KAQVALTEYERMQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIETLIRD 412
Query: 256 M 256
M
Sbjct: 413 M 413
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESCK--------SRHVDIEEEVIRFQSVLNEFK 54
LL SW ELFIL AQ L + L+ + R V ++V FQ +++
Sbjct: 234 LLRLSWSELFILNAAQSALPLHMAPLLAAAGFHSSPMSAERVVSFMDQVRVFQDQVDKLT 293
Query: 55 VLNIDPYEYDYIRAITLFKTA 75
L +D EY ++AI LF A
Sbjct: 294 RLQVDSAEYSCLKAIALFSPA 314
>gi|158253732|gb|AAI54181.1| Zgc:103631 protein [Danio rerio]
Length = 344
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 78/152 (51%), Gaps = 24/152 (15%)
Query: 109 LGELVESCKSRHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNR 168
L +L + + + +V Q V + FK L +DP E+ ++AI LFK
Sbjct: 216 LPDLSPTGQGKGSPSASDVRVLQEVFSRFKPLQVDPTEFACLKAIVLFK----------- 264
Query: 169 SSSSSDDGSEHPES-CLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLK 227
PE+ L+D + +Q +Q+ L ++IHT+YPSQ RF ++ L+LP L
Sbjct: 265 -----------PETRGLKDPEQVENLQDQSQVLLAQHIHTLYPSQVARFGRLLLLLPSLH 313
Query: 228 SIPSLVLEELFFRNIIGHNTTIKKTIWHMYKN 259
+ S +E LFF+ IG NT ++K + M+KN
Sbjct: 314 FVSSERIEHLFFQRTIG-NTPMEKLLCDMFKN 344
>gi|321465568|gb|EFX76568.1| hypothetical protein DAPPUDRAFT_106791 [Daphnia pulex]
Length = 310
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 24/174 (13%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLNIDPY 145
+LL ESW ELF++ Q+ +D L + + + + F+V+ +DP
Sbjct: 161 ILLEESWSELFLICAIQFCLPMDNNPLFS--LAHFNQPHSATLGCGNGVTRFRVVAVDPA 218
Query: 146 EYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYI 205
E+ ++AI LFK+ L+D I + +Q Q+ LN++I
Sbjct: 219 EFACLKAIILFKSETRG---------------------LKDPIQVENLQDQAQVMLNQHI 257
Query: 206 HTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKN 259
P +P RF ++ L LP L+ + + LE+L+FR+ IG +T ++K + MYKN
Sbjct: 258 RNQQPQRPARFGRLLLTLPLLRHVTAHRLEQLYFRHTIG-STPMEKVLCDMYKN 310
>gi|395825625|ref|XP_003786025.1| PREDICTED: COUP transcription factor 1 [Otolemur garnettii]
Length = 267
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 31/162 (19%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 101 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 160
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L D I ++Q +
Sbjct: 161 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDAAHIESLQEKS 198
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFF 239
Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF
Sbjct: 199 QCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 240
Score = 37.0 bits (84), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 101 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 160
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 161 ALHVDSAEYSCLKAIVLFTS 180
>gi|259013249|ref|NP_001158369.1| transcription factor COUP1 [Saccoglossus kowalevskii]
gi|196123801|gb|ACG70189.1| COUP protein [Saccoglossus kowalevskii]
Length = 435
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 84/179 (46%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL W ELF+L +Q L + L+ + R V + + FQ + + K
Sbjct: 265 LLRMVWSELFVLNASQCSMPLHVAPLLAASGLHTSPMSADRVVAFMDHIRIFQEQVEKLK 324
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L D I +Q +
Sbjct: 325 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDAAHIENLQEKS 362
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QP RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 363 QCALEEYVRSQYPNQPNRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIETLIRDM 420
>gi|120974938|gb|ABM46767.1| NR2E1 [Gorilla gorilla]
Length = 88
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 184 LRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNII 243
R+ AIAA+Q Q+ LN YIHT YP+QP RF K+ L+LP L+SI +EE+FF+ I
Sbjct: 11 FRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTI 70
Query: 244 GHNTTIKKTIWHMYKNA 260
G N I + + MYK++
Sbjct: 71 G-NVPITRLLSDMYKSS 86
>gi|397491841|ref|XP_003816848.1| PREDICTED: COUP transcription factor 2 [Pan paniscus]
Length = 367
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 79/161 (49%), Gaps = 31/161 (19%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 225 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 284
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L DV + ++Q +
Sbjct: 285 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDVAHVESLQEKS 322
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELF 238
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LF
Sbjct: 323 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLF 363
Score = 37.0 bits (84), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 225 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 284
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 285 ALHVDSAEYSCLKAIVLFTS 304
>gi|395736005|ref|XP_002815781.2| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1 [Pongo
abelii]
Length = 422
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 31/162 (19%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 251 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 310
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L D I ++Q +
Sbjct: 311 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDAAHIESLQEKS 348
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFF 239
Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF
Sbjct: 349 QCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 390
Score = 36.6 bits (83), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 251 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 310
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 311 ALHVDSAEYSCLKAIVLFTS 330
>gi|321477464|gb|EFX88423.1| hypothetical protein DAPPUDRAFT_311322 [Daphnia pulex]
Length = 364
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 84/179 (46%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL W ELF+L +Q L + L+ + R V + + FQ + + K
Sbjct: 194 LLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLK 253
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF T ++C L DV I ++Q +
Sbjct: 254 ALHVDSAEYSCLKAIVLFTT----------------------DACGLSDVGHIESLQEKS 291
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y T Y +QP RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 292 QCALEEYCRTQYANQPVRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIETLIRDM 349
>gi|1036801|gb|AAA93013.1| svp, partial [Schistocerca americana]
Length = 121
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 66/128 (51%), Gaps = 24/128 (18%)
Query: 130 FQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVI 188
FQ + + K L++D EY ++AI LF T ++C L DV
Sbjct: 2 FQEQVEKLKALHVDSAEYSCLKAIVLFTT----------------------DACGLSDVA 39
Query: 189 AIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTT 248
I +Q +Q L +Y T YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T
Sbjct: 40 HIEGLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTP 98
Query: 249 IKKTIWHM 256
I+ I M
Sbjct: 99 IETLIRDM 106
>gi|440907586|gb|ELR57717.1| COUP transcription factor 1, partial [Bos grunniens mutus]
Length = 368
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 82/178 (46%), Gaps = 31/178 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 197 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 256
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
L++D EY ++AI L L D I ++Q +Q
Sbjct: 257 ALHVDSAEYSCLKAIVLTADACG----------------------LSDAAHIESLQEKSQ 294
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 295 CALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 351
>gi|390357069|ref|XP_003728922.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Strongylocentrotus purpuratus]
Length = 585
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 77/151 (50%), Gaps = 28/151 (18%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELV-----ESCKSRHVD--IEEEVIRFQSVLNEFK 138
+LL ESW ELF+LG Q+ S + G+LV S K D I+ +V Q ++ +
Sbjct: 453 ILLEESWGELFVLGACQWSLSAECGQLVSAETLNSLKKDQSDTSIQHDVRILQDIVCRVR 512
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
L DP E+ ++A+TLF+ D+R LR+V+ + +Q TQ
Sbjct: 513 ELQADPMEFACLKALTLFR-------PDSRG--------------LREVMTVERLQDETQ 551
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSI 229
+ L +Y H Y +Q RF K+ L+LP ++S+
Sbjct: 552 LTLAEYNHAHYLTQRARFGKLLLLLPSVRSV 582
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 56/109 (51%), Gaps = 11/109 (10%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELV-----ESCKSRHVD--IEEEVIRFQSVLNEFK 54
+LL ESW ELF+LG Q+ S + G+LV S K D I+ +V Q ++ +
Sbjct: 453 ILLEESWGELFVLGACQWSLSAECGQLVSAETLNSLKKDQSDTSIQHDVRILQDIVCRVR 512
Query: 55 VLNIDPYEYDYIRAITLFKTAFTSRRELAGHLLLAESWRELFILGLAQY 103
L DP E+ ++A+TLF+ RE ++ E ++ L LA+Y
Sbjct: 513 ELQADPMEFACLKALTLFRPDSRGLRE----VMTVERLQDETQLTLAEY 557
>gi|348583723|ref|XP_003477622.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Cavia
porcellus]
Length = 603
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 90/182 (49%), Gaps = 30/182 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSV--------LNEF 137
+LL E+W ELF+LG Q+ LD L+ ++ + + SV + F
Sbjct: 444 ILLEEAWGELFLLGAIQWSLPLDSCPLLAPAEASAAGSSQGRLALASVERRFLQETVARF 503
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ L +DP E+ ++A+ LFK E P L+D + A+Q +
Sbjct: 504 RALAVDPTEFACMKALILFKP-------------------ETPG--LKDPEHVEALQDQS 542
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ L+++ +PSQP RF K+ L+LP L+ + S +E +FF IG NT ++K + M+
Sbjct: 543 QMMLSQHTKAHHPSQPMRFGKLLLLLPSLRFLTSERIEHVFFCKTIG-NTPMEKLLCDMF 601
Query: 258 KN 259
KN
Sbjct: 602 KN 603
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVI-------RF-QSVLNEF 53
+LL E+W ELF+LG Q+ LD L+ ++ + + RF Q + F
Sbjct: 444 ILLEEAWGELFLLGAIQWSLPLDSCPLLAPAEASAAGSSQGRLALASVERRFLQETVARF 503
Query: 54 KVLNIDPYEYDYIRAITLFK 73
+ L +DP E+ ++A+ LFK
Sbjct: 504 RALAVDPTEFACMKALILFK 523
>gi|47196001|emb|CAF94879.1| unnamed protein product [Tetraodon nigroviridis]
Length = 132
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 70/139 (50%), Gaps = 24/139 (17%)
Query: 119 RHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSE 178
R V + + FQ + + KVL++D EY I+AI LF T
Sbjct: 2 RVVAFMDHIRVFQEQVEKLKVLHVDSAEYSCIKAIVLFTT-------------------- 41
Query: 179 HPESC-LRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEEL 237
++C L DV + +Q +Q L +Y+ YP+QP RF K+ L LP L+++ S V+E+L
Sbjct: 42 --DACGLSDVAHVEGLQEKSQCALEEYVRAQYPNQPNRFGKLLLRLPSLRTVSSAVIEQL 99
Query: 238 FFRNIIGHNTTIKKTIWHM 256
FF ++G T I+ I M
Sbjct: 100 FFIRLVG-KTPIETLIRDM 117
>gi|322791504|gb|EFZ15895.1| hypothetical protein SINV_00119 [Solenopsis invicta]
Length = 337
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 90/174 (51%), Gaps = 7/174 (4%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVE-SCKSRHVDIEEEVIRFQSVLNEFKVLNIDPY 145
LL SWRELF+L AQ +P+LD L+ S + + + EV RF+ L F +N+D +
Sbjct: 167 LLESSWRELFLLAAAQMIPTLDPTPLLPPSMLPQSISLMIEVNRFRETLAGFHAMNLDQH 226
Query: 146 EYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYI 205
E+ IRAI LFK ++ E + S+SS+ S LRD + +A + Q+ L + +
Sbjct: 227 EFACIRAIVLFKAGLDSEPVSSSRSTSSNSPSPGSR--LRDAVGVARLMDSAQLALGQRL 284
Query: 206 HTV-YPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 258
Y + + L R S+ + +EELFFR IG I++ I +YK
Sbjct: 285 SGASYGTLRLNKLLLLLPTLR--SVSAHAIEELFFRTTIG-VIPIERIICDVYK 335
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVE-SCKSRHVDIEEEVIRFQSVLNEFKVLNIDPY 61
LL SWRELF+L AQ +P+LD L+ S + + + EV RF+ L F +N+D +
Sbjct: 167 LLESSWRELFLLAAAQMIPTLDPTPLLPPSMLPQSISLMIEVNRFRETLAGFHAMNLDQH 226
Query: 62 EYDYIRAITLFKTAFTS 78
E+ IRAI LFK S
Sbjct: 227 EFACIRAIVLFKAGLDS 243
>gi|332021198|gb|EGI61583.1| Nuclear receptor subfamily 2 group E member 1 [Acromyrmex
echinatior]
Length = 396
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 90/173 (52%), Gaps = 7/173 (4%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLNIDPYE 146
LL SWRELF+L AQ +P+LD L+ + + + EV RF+ L F +N+D +E
Sbjct: 228 LLESSWRELFLLAAAQMIPTLDPTPLLP-LNLQSIGLAIEVNRFRETLAGFHAMNLDQHE 286
Query: 147 YDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIH 206
+ IRAI LFK +++E + S+SS+ S LRD + +A + Q+ L + +
Sbjct: 287 FACIRAIVLFKAGLDNEPVSSSRSTSSNSPSPGSR--LRDAVCVARLMDSAQLALGQRLS 344
Query: 207 TV-YPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 258
Y + + L R S+ + +EELFFR IG I++ I +YK
Sbjct: 345 GASYGTLRLNKLLLLLPTLR--SVSAHAIEELFFRTTIG-VIPIERIICDVYK 394
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLNIDPYE 62
LL SWRELF+L AQ +P+LD L+ + + + EV RF+ L F +N+D +E
Sbjct: 228 LLESSWRELFLLAAAQMIPTLDPTPLLP-LNLQSIGLAIEVNRFRETLAGFHAMNLDQHE 286
Query: 63 YDYIRAITLFKTAF 76
+ IRAI LFK
Sbjct: 287 FACIRAIVLFKAGL 300
>gi|327265992|ref|XP_003217791.1| PREDICTED: nuclear receptor subfamily 2 group C member 2-like
[Anolis carolinensis]
Length = 629
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 81/198 (40%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 439 AFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRI 498
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N L+ID YEY Y++A+ LF S+HP
Sbjct: 499 KQVMEHIWKLQEFCNSMTKLDIDGYEYAYLKAVVLFS-------------------SDHP 539
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L + I Q Q+ L Y+ YP R +I + LP L+ + S + EELFF
Sbjct: 540 G--LTNSNQIEKFQEKAQMELQDYVQKTYPEDTYRLARILVRLPALRLMSSSITEELFFT 597
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N I I ++ K
Sbjct: 598 GLIG-NVPIDSIIPYILK 614
Score = 43.5 bits (101), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 14/86 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 451 LVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE 510
Query: 49 VLNEFKVLNIDPYEYDYIRAITLFKT 74
N L+ID YEY Y++A+ LF +
Sbjct: 511 FCNSMTKLDIDGYEYAYLKAVVLFSS 536
>gi|181330916|ref|NP_001116766.1| nuclear receptor subfamily 2 group C member 2 [Danio rerio]
Length = 623
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 81/199 (40%), Gaps = 37/199 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLG----ELVESCKSRHVDIE------ 124
AF + + L+ W ELFILGLAQ + L +V +S D++
Sbjct: 432 AFLALGQECNTALVRACWNELFILGLAQCAQIMSLSTILTAIVNHLQSSIQDVDKLSSER 491
Query: 125 -----EEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEH 179
E + + Q N L D YEY Y++AI LF +H
Sbjct: 492 IKLVMEHIWKLQEFCNSMAKLQTDAYEYAYLKAIVLFS-------------------PDH 532
Query: 180 PESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFF 239
P L I Q Q+ L Y+ YP + R +I L LP L+ + S + EELFF
Sbjct: 533 PG--LSSCSQIEKFQEKAQMELQDYVQKTYPDETYRLARILLRLPALRLMSSSITEELFF 590
Query: 240 RNIIGHNTTIKKTIWHMYK 258
+IG N I I ++ K
Sbjct: 591 TGLIG-NVPIDSIIPYILK 608
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 15/85 (17%)
Query: 3 LLAESWRELFILGLAQYLPSLDLG----ELVESCKSRHVDIE-----------EEVIRFQ 47
L+ W ELFILGLAQ + L +V +S D++ E + + Q
Sbjct: 444 LVRACWNELFILGLAQCAQIMSLSTILTAIVNHLQSSIQDVDKLSSERIKLVMEHIWKLQ 503
Query: 48 SVLNEFKVLNIDPYEYDYIRAITLF 72
N L D YEY Y++AI LF
Sbjct: 504 EFCNSMAKLQTDAYEYAYLKAIVLF 528
>gi|443715570|gb|ELU07483.1| hypothetical protein CAPTEDRAFT_224811 [Capitella teleta]
Length = 360
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 92/196 (46%), Gaps = 45/196 (22%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSR-------------HVDIEEEVIRFQSV 133
LL E+W++LF++ LAQ LD+ L+E+ ++ H DI + ++
Sbjct: 184 LLEETWKDLFLISLAQTACHLDIATLMENADTKLCNPLQVLRHRDVHSDINDRHLQVAHF 243
Query: 134 LNEFKV----------LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC 183
+ E K+ + +D E+ +RA+ LF+ I S
Sbjct: 244 VQEAKIVCDMILRMKRMAMDRTEFACLRAVVLFRQDI---------------------SR 282
Query: 184 LRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNII 243
L+DV + +Q Q+ L +Y + +Q TRF ++ L P L++IP+ ++ +FFR +
Sbjct: 283 LKDVRPVENLQDQAQMILAEYSILHHQNQSTRFGRLLLATPALRAIPASLVSRIFFRETV 342
Query: 244 GHNTTIKKTIWHMYKN 259
G N I++ + +Y+N
Sbjct: 343 G-NIPIERLVCDIYQN 357
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 23/94 (24%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESCKSR-------------HVDIEEEVIRFQSV 49
LL E+W++LF++ LAQ LD+ L+E+ ++ H DI + ++
Sbjct: 184 LLEETWKDLFLISLAQTACHLDIATLMENADTKLCNPLQVLRHRDVHSDINDRHLQVAHF 243
Query: 50 LNEFKV----------LNIDPYEYDYIRAITLFK 73
+ E K+ + +D E+ +RA+ LF+
Sbjct: 244 VQEAKIVCDMILRMKRMAMDRTEFACLRAVVLFR 277
>gi|260802126|ref|XP_002595944.1| hypothetical protein BRAFLDRAFT_235500 [Branchiostoma floridae]
gi|229281196|gb|EEN51956.1| hypothetical protein BRAFLDRAFT_235500 [Branchiostoma floridae]
Length = 369
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 81/178 (45%), Gaps = 26/178 (14%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVI----RFQSVLNEFKVLN 141
+LL E W ELF+L Q+ D LV + + Q +++ FK L
Sbjct: 214 ILLEEGWGELFLLCAIQWSMPFDTSPLVSPTEHAQSGGSGATLLDLRALQEMVDRFKALE 273
Query: 142 IDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFL 201
+DP E+ ++A+ LFK D R L+D + + +Q Q+ L
Sbjct: 274 VDPSEFACLKAVALFKP-------DTRG--------------LKDPLQVEKLQDQAQLML 312
Query: 202 NKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKN 259
++ + + P RF ++ L LP L+ + +E +FF+ IG NT +++ + M+KN
Sbjct: 313 AEHTRSQNRNHPIRFGRLLLTLPCLRHVGPDRIETIFFQRTIG-NTPMERLLSDMFKN 369
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVI----RFQSVLNEFKVLN 57
+LL E W ELF+L Q+ D LV + + Q +++ FK L
Sbjct: 214 ILLEEGWGELFLLCAIQWSMPFDTSPLVSPTEHAQSGGSGATLLDLRALQEMVDRFKALE 273
Query: 58 IDPYEYDYIRAITLFK 73
+DP E+ ++A+ LFK
Sbjct: 274 VDPSEFACLKAVALFK 289
>gi|405974187|gb|EKC38851.1| Photoreceptor-specific nuclear receptor [Crassostrea gigas]
Length = 438
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 91/183 (49%), Gaps = 32/183 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELV---ESCKSRHVDIE-----EEVIRFQSVLNEF 137
+LL E+W ELF+L Q+ ++ L+ E+ + + +I+ + Q + F
Sbjct: 279 ILLEEAWSELFLLCAIQWSMPMETSPLLMTHEAAQPQMSNIKTGSEYPDNRLLQEIFRRF 338
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGH 196
K +DP E+ ++AI LFK PE+ L+D + + Q
Sbjct: 339 KHTQVDPAEFACLKAIALFK----------------------PETRGLKDPLQVENFQDQ 376
Query: 197 TQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q+ +++++ + YP+Q RF ++ L++P LK +PS +E++FF IG + ++K + M
Sbjct: 377 AQMMMSQHVRSNYPTQHIRFGRLLLMIPSLKFVPSDRVEKIFFGRTIG-SVPMEKLLCDM 435
Query: 257 YKN 259
+K
Sbjct: 436 FKG 438
>gi|193575673|ref|XP_001945915.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Acyrthosiphon pisum]
Length = 396
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 91/177 (51%), Gaps = 19/177 (10%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSR---HVDIEEEVIRFQSVLNEFKVLNID 143
LL ESW ELFIL AQ+ D+ L E +S +DI+E++ F+ L K ID
Sbjct: 213 LLRESWHELFILTAAQFFSDTDISLLHEEHRSNFGSSMDIDEQIAVFKDTLAAVKHRQID 272
Query: 144 PYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNK 203
P E + I L K+ VK SS SE+ E+ L D +++ + + L +
Sbjct: 273 PIEQYLLNEIVLLKSA---SVKGRGCSS-----SENTETIL-DGLSVKSKEA-----LRR 318
Query: 204 YIHTVYPSQP-TRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKN 259
+++ V+ ++P R+ ++ ILP ++S+P + ELFFR IG T I+ + Y N
Sbjct: 319 HVNHVHMARPDARYDELIDILPGIRSVPKTTVVELFFRRTIGQ-TPIEPFVCGTYTN 374
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESCKSR---HVDIEEEVIRFQSVLNEFKVLNID 59
LL ESW ELFIL AQ+ D+ L E +S +DI+E++ F+ L K ID
Sbjct: 213 LLRESWHELFILTAAQFFSDTDISLLHEEHRSNFGSSMDIDEQIAVFKDTLAAVKHRQID 272
Query: 60 PYEYDYIRAITLFKTAFTSRR 80
P E + I L K+A R
Sbjct: 273 PIEQYLLNEIVLLKSASVKGR 293
>gi|345325277|ref|XP_003430902.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Ornithorhynchus anatinus]
Length = 337
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
Query: 186 DVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
+ AIAA+Q Q+ LN YIHT YP+QP RF K+ L+LP L+SI +EE+FF+ IG
Sbjct: 262 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSIGPSTIEEVFFKKTIG- 320
Query: 246 NTTIKKTIWHMYKNA 260
N I + + MYK++
Sbjct: 321 NVPITRLLSDMYKSS 335
>gi|312381897|gb|EFR27526.1| hypothetical protein AND_05729 [Anopheles darlingi]
Length = 399
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 91/186 (48%), Gaps = 34/186 (18%)
Query: 86 LLLAESWRELFILGLAQYLPSLD-----LGELVESCKS-------RHVDIEEEVIRFQSV 133
+LL ESW ELF+L Q+ +D L L E C S + + +++
Sbjct: 236 ILLEESWAELFLLNAIQWCMPIDTTACTLFSLNEHCNSVNNSGFFKPGQLAQDLRILNDT 295
Query: 134 LNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAI 193
L FK + +DP E+ ++AI LF++ E + L+D + I +
Sbjct: 296 LCRFKSVMVDPAEFACMKAIVLFRS----EARG-----------------LKDPVQIENL 334
Query: 194 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTI 253
Q Q+ L ++ T +P Q RF ++ L+LP L+++ S +E ++F+ IG NT ++K +
Sbjct: 335 QDQAQVMLAQHSRTQFPGQIARFGRLLLMLPLLRAVNSQKIESIYFQKTIG-NTPMEKVL 393
Query: 254 WHMYKN 259
MYKN
Sbjct: 394 CDMYKN 399
Score = 40.8 bits (94), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 12/85 (14%)
Query: 2 LLLAESWRELFILGLAQYLPSLD-----LGELVESCKS-------RHVDIEEEVIRFQSV 49
+LL ESW ELF+L Q+ +D L L E C S + + +++
Sbjct: 236 ILLEESWAELFLLNAIQWCMPIDTTACTLFSLNEHCNSVNNSGFFKPGQLAQDLRILNDT 295
Query: 50 LNEFKVLNIDPYEYDYIRAITLFKT 74
L FK + +DP E+ ++AI LF++
Sbjct: 296 LCRFKSVMVDPAEFACMKAIVLFRS 320
>gi|242020457|ref|XP_002430670.1| retinoid X receptor, putative [Pediculus humanus corporis]
gi|212515850|gb|EEB17932.1| retinoid X receptor, putative [Pediculus humanus corporis]
Length = 344
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 77/164 (46%), Gaps = 28/164 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVE-----SCKSRHVDIEEEVIRFQSVLNEFKVL 140
+LL +W ELFIL AQ+ +D LV + K++ E EV F+ ++ +F L
Sbjct: 201 ILLENTWNELFILSAAQWTLPVDEEYLVRVTSLPNNKAKE-KFEREVKNFKKIITKFNNL 259
Query: 141 NIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIF 200
N+D EY ++A+TLFK + L+D + + +Q T I
Sbjct: 260 NVDYTEYACLKALTLFKAETSE---------------------LKDRLQVEMLQDQTHIM 298
Query: 201 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L+ Y T S RF K+ ++LP + + +EEL FR IG
Sbjct: 299 LHDYC-TSQDSHKARFGKLLMLLPSVNGLSKDFIEELLFRKTIG 341
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVE-----SCKSRHVDIEEEVIRFQSVLNEFKVL 56
+LL +W ELFIL AQ+ +D LV + K++ E EV F+ ++ +F L
Sbjct: 201 ILLENTWNELFILSAAQWTLPVDEEYLVRVTSLPNNKAKE-KFEREVKNFKKIITKFNNL 259
Query: 57 NIDPYEYDYIRAITLFKT 74
N+D EY ++A+TLFK
Sbjct: 260 NVDYTEYACLKALTLFKA 277
>gi|189238719|ref|XP_970391.2| PREDICTED: similar to Hormone receptor 51 CG16801-PA [Tribolium
castaneum]
Length = 393
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 87/179 (48%), Gaps = 29/179 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLG-----ELVESCKSRHVDIEEEVIRFQSVLNEFKVL 140
+LL E+W ELF+L Q+ LD+ + E K+ H + ++ L FK +
Sbjct: 239 ILLEEAWSELFLLNAIQWCMPLDVSASPLFNVNEHVKNGHSATDVRIL--ADTLMRFKAI 296
Query: 141 NIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIF 200
++DP E+ ++AI LF++ L+D I +Q Q+
Sbjct: 297 HVDPAEFACLKAIVLFRSETRG---------------------LKDPSQIENLQDQAQVM 335
Query: 201 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKN 259
L ++ T P Q RF ++ L+LP L+ +P+ +E +FF+ IG NT ++K + MYKN
Sbjct: 336 LWQHCRTQLPGQVARFGRLLLMLPLLRIVPASRVEAVFFQKTIG-NTPMEKVLCDMYKN 393
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLG-----ELVESCKSRHVDIEEEVIRFQSVLNEFKVL 56
+LL E+W ELF+L Q+ LD+ + E K+ H + ++ L FK +
Sbjct: 239 ILLEEAWSELFLLNAIQWCMPLDVSASPLFNVNEHVKNGHSATDVRIL--ADTLMRFKAI 296
Query: 57 NIDPYEYDYIRAITLFKT 74
++DP E+ ++AI LF++
Sbjct: 297 HVDPAEFACLKAIVLFRS 314
>gi|270011038|gb|EFA07486.1| hormone receptor 51 [Tribolium castaneum]
Length = 470
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 87/179 (48%), Gaps = 29/179 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLG-----ELVESCKSRHVDIEEEVIRFQSVLNEFKVL 140
+LL E+W ELF+L Q+ LD+ + E K+ H + ++ L FK +
Sbjct: 316 ILLEEAWSELFLLNAIQWCMPLDVSASPLFNVNEHVKNGHSATDVRIL--ADTLMRFKAI 373
Query: 141 NIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIF 200
++DP E+ ++AI LF++ L+D I +Q Q+
Sbjct: 374 HVDPAEFACLKAIVLFRSETRG---------------------LKDPSQIENLQDQAQVM 412
Query: 201 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKN 259
L ++ T P Q RF ++ L+LP L+ +P+ +E +FF+ IG NT ++K + MYKN
Sbjct: 413 LWQHCRTQLPGQVARFGRLLLMLPLLRIVPASRVEAVFFQKTIG-NTPMEKVLCDMYKN 470
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLG-----ELVESCKSRHVDIEEEVIRFQSVLNEFKVL 56
+LL E+W ELF+L Q+ LD+ + E K+ H + ++ L FK +
Sbjct: 316 ILLEEAWSELFLLNAIQWCMPLDVSASPLFNVNEHVKNGHSATDVRIL--ADTLMRFKAI 373
Query: 57 NIDPYEYDYIRAITLFKT 74
++DP E+ ++AI LF++
Sbjct: 374 HVDPAEFACLKAIVLFRS 391
>gi|403256259|ref|XP_003920806.1| PREDICTED: COUP transcription factor 1 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 281
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 109 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 168
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY + + +F ++C L D I ++Q +
Sbjct: 169 ALHVDSAEYSCLSPVVVFTF----------------------DACGLSDAAHIESLQEKS 206
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 207 QCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 264
>gi|156376474|ref|XP_001630385.1| predicted protein [Nematostella vectensis]
gi|156217405|gb|EDO38322.1| predicted protein [Nematostella vectensis]
Length = 340
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 86/184 (46%), Gaps = 32/184 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD---------IEEEVIRFQSVLNE 136
+LL E WRELFI+G Q+ L++ L+ + HVD ++ + Q + +
Sbjct: 180 VLLEEGWRELFIMGAIQWNLPLEVAPLLAA-AGMHVDNTPAEKIVATMADIRKLQEIGSR 238
Query: 137 FKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGH 196
F+ L + E+ ++AI LFK + D LRD + Q
Sbjct: 239 FRALQVCEAEFACLKAIVLFKPDLRD---------------------LRDPQQVECYQDQ 277
Query: 197 TQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
QI L YI + Q RF K+ L+LP L+ + + +EELFFR IG + I+ + M
Sbjct: 278 AQIMLGDYIKRQFAGQQVRFGKLLLMLPSLRLVRNKTIEELFFRQTIG-SVAIESLLCDM 336
Query: 257 YKNA 260
+K++
Sbjct: 337 FKSS 340
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 10/81 (12%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD---------IEEEVIRFQSVLNE 52
+LL E WRELFI+G Q+ L++ L+ + HVD ++ + Q + +
Sbjct: 180 VLLEEGWRELFIMGAIQWNLPLEVAPLLAA-AGMHVDNTPAEKIVATMADIRKLQEIGSR 238
Query: 53 FKVLNIDPYEYDYIRAITLFK 73
F+ L + E+ ++AI LFK
Sbjct: 239 FRALQVCEAEFACLKAIVLFK 259
>gi|449274063|gb|EMC83368.1| Nuclear receptor subfamily 2 group C member 2 [Columba livia]
Length = 596
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 79/198 (39%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 406 AFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRI 465
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N L+ID YEY Y++AI LF +HP
Sbjct: 466 KQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFS-------------------PDHP 506
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ YP R +I + LP L+ + S + EELFF
Sbjct: 507 G--LTSSTQIEKFQEKAQMELQDYVQKTYPEDTYRLARILVRLPALRLMSSSITEELFFT 564
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N I I ++ K
Sbjct: 565 GLIG-NVPIDSIIPYILK 581
Score = 43.5 bits (101), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 418 LVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE 477
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L+ID YEY Y++AI LF
Sbjct: 478 FCNSMAKLDIDGYEYAYLKAIVLF 501
>gi|72099629|ref|XP_789465.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Strongylocentrotus purpuratus]
Length = 457
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 83/171 (48%), Gaps = 33/171 (19%)
Query: 86 LLLAESWRELFILGLAQY---------LPSLDLGELVESCKSRH---VDIEEEVIRFQSV 133
+LL E+WR+LF++G+ Q+ L SL + V+ K+ ++ +V +
Sbjct: 293 ILLEETWRDLFLMGMCQWAVPLESDALLKSLAVSMSVKGVKTSAETTAELAAQVRYMKET 352
Query: 134 LNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAI 193
+ + + + +D E+ ++AI LFK+ + +R + ++
Sbjct: 353 VAKLRAMKVDFTEFACLKAIALFKSETRGLSEPHR---------------------VESL 391
Query: 194 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
Q Q+ L Y+ + SQP RF ++ L+L L+++ S LE+LFF+ IIG
Sbjct: 392 QDQAQVMLGDYVRYAHLSQPPRFGRLLLMLSALRAVSSKFLEKLFFKQIIG 442
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 12/85 (14%)
Query: 2 LLLAESWRELFILGLAQY---------LPSLDLGELVESCKSRH---VDIEEEVIRFQSV 49
+LL E+WR+LF++G+ Q+ L SL + V+ K+ ++ +V +
Sbjct: 293 ILLEETWRDLFLMGMCQWAVPLESDALLKSLAVSMSVKGVKTSAETTAELAAQVRYMKET 352
Query: 50 LNEFKVLNIDPYEYDYIRAITLFKT 74
+ + + + +D E+ ++AI LFK+
Sbjct: 353 VAKLRAMKVDFTEFACLKAIALFKS 377
>gi|157115449|ref|XP_001658211.1| expressed protein (HR51) [Aedes aegypti]
gi|108876909|gb|EAT41134.1| AAEL007190-PA [Aedes aegypti]
Length = 594
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 90/186 (48%), Gaps = 34/186 (18%)
Query: 86 LLLAESWRELFILGLAQYLPSLD-----LGELVESCKS-------RHVDIEEEVIRFQSV 133
+LL ESW ELF+L Q+ +D L L E C S + + +++
Sbjct: 431 ILLEESWSELFLLNAIQWCMPIDTSACTLFSLNEHCSSVNNSGVFKPGQLAQDLRVLNDT 490
Query: 134 LNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAI 193
L FK + +DP E+ ++AI LF++ E + L+D + I +
Sbjct: 491 LCRFKSVMVDPAEFACMKAIVLFRS----EARG-----------------LKDPVQIENL 529
Query: 194 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTI 253
Q Q+ L ++ T +P Q RF ++ L+LP L+ I S +E ++F+ IG NT ++K +
Sbjct: 530 QDQAQVMLAQHSRTQFPGQIARFGRLLLMLPLLRIINSHKIESIYFQKTIG-NTPMEKVL 588
Query: 254 WHMYKN 259
MYKN
Sbjct: 589 CDMYKN 594
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 12/85 (14%)
Query: 2 LLLAESWRELFILGLAQYLPSLD-----LGELVESCKS-------RHVDIEEEVIRFQSV 49
+LL ESW ELF+L Q+ +D L L E C S + + +++
Sbjct: 431 ILLEESWSELFLLNAIQWCMPIDTSACTLFSLNEHCSSVNNSGVFKPGQLAQDLRVLNDT 490
Query: 50 LNEFKVLNIDPYEYDYIRAITLFKT 74
L FK + +DP E+ ++AI LF++
Sbjct: 491 LCRFKSVMVDPAEFACMKAIVLFRS 515
>gi|241651520|ref|XP_002411276.1| retinoid X receptor, putative [Ixodes scapularis]
gi|215503906|gb|EEC13400.1| retinoid X receptor, putative [Ixodes scapularis]
Length = 370
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 86/191 (45%), Gaps = 45/191 (23%)
Query: 87 LLAESWRELFILGLAQY---------LPSLDLGE----------LVESCKSRHVDIEEEV 127
LL ESW++LF+L +AQ+ LP L G L S H E
Sbjct: 199 LLEESWKDLFLLYMAQWSVAADLVSSLPGLKGGAGAALRLHPDALAALEGSPHQGAELHY 258
Query: 128 IRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRD 186
I Q V+ + L+ D E ++A+ LFK PE+ L D
Sbjct: 259 I--QDVMRRLRQLSPDDTECSCLKAVVLFK----------------------PETIGLCD 294
Query: 187 VIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHN 246
V + +Q Q L YI +P QPTRF ++ L+LP L++I + +E LFF++ IG N
Sbjct: 295 VHPVEMLQDQAQCVLGDYIRHKHPRQPTRFGRLLLLLPSLRAISAATVERLFFKDTIG-N 353
Query: 247 TTIKKTIWHMY 257
I++ + MY
Sbjct: 354 IPIERILGDMY 364
>gi|326928210|ref|XP_003210274.1| PREDICTED: nuclear receptor subfamily 2 group C member 2-like
[Meleagris gallopavo]
Length = 592
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 79/198 (39%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 402 AFQALGQECNTGLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRI 461
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N ++ID YEY Y++AI LF +HP
Sbjct: 462 KQVMEHIWKLQEFCNSMAKIDIDGYEYAYLKAIVLFS-------------------PDHP 502
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ YP R +I + LP L+ + S + EELFF
Sbjct: 503 G--LNSSTQIEKFQEKAQMELQDYVQKTYPEDTYRLARILVRLPALRLMSSSITEELFFT 560
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N I I ++ K
Sbjct: 561 GLIG-NVPIDSIIPYILK 577
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 414 LVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE 473
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N ++ID YEY Y++AI LF
Sbjct: 474 FCNSMAKIDIDGYEYAYLKAIVLF 497
>gi|363738759|ref|XP_414462.3| PREDICTED: nuclear receptor subfamily 2 group C member 2 [Gallus
gallus]
Length = 629
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 79/198 (39%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 439 AFQALGQECNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRI 498
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N ++ID YEY Y++AI LF +HP
Sbjct: 499 KQVMEHIWKLQEFCNSMAKIDIDGYEYAYLKAIVLFS-------------------PDHP 539
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ YP R +I + LP L+ + S + EELFF
Sbjct: 540 G--LNSSTQIEKFQEKAQMELQDYVQKTYPEDTYRLARILVRLPALRLMSSSITEELFFT 597
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N I I ++ K
Sbjct: 598 GLIG-NVPIDSIIPYILK 614
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 451 LVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE 510
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N ++ID YEY Y++AI LF
Sbjct: 511 FCNSMAKIDIDGYEYAYLKAIVLF 534
>gi|426233871|ref|XP_004010932.1| PREDICTED: photoreceptor-specific nuclear receptor [Ovis aries]
Length = 516
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 74/144 (51%), Gaps = 24/144 (16%)
Query: 117 KSRHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDG 176
+ R V E Q ++ F+ L +DP E+ ++A+ LFK
Sbjct: 396 QGRLVLASAETRILQETVSRFRALAVDPTEFACMKALVLFK------------------- 436
Query: 177 SEHPES-CLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLE 235
PE+ L+D + A+Q +Q+ L+++ +PSQP RF K+ L+LP L+ I S +E
Sbjct: 437 ---PETRGLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITSERVE 493
Query: 236 ELFFRNIIGHNTTIKKTIWHMYKN 259
LFFR IG NT ++K + M+KN
Sbjct: 494 LLFFRKTIG-NTPMEKLLCDMFKN 516
>gi|426228806|ref|XP_004008487.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
F member 6, partial [Ovis aries]
Length = 382
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 81/180 (45%), Gaps = 37/180 (20%)
Query: 91 SWRELFILGLAQY-LP-------SLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLNI 142
SW ELF+L AQ LP + R V ++V FQ +++ L +
Sbjct: 211 SWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLGRLQV 270
Query: 143 DPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHTQIFL 201
D EY ++AI LF P++C L D + ++Q Q+ L
Sbjct: 271 DSAEYGCLKAIALFT----------------------PDACGLSDPAHVESLQEKAQVAL 308
Query: 202 NKYIHTVYPSQPTRFCKIQLILP-----RLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
+Y+ YPSQP RF ++ L LP R +++P+ ++ +LFF ++G T I+ I M
Sbjct: 309 TEYVRAQYPSQPQRFGRLLLRLPALGARRARAVPASLISQLFFMRLVG-KTPIETLIRDM 367
>gi|260828845|ref|XP_002609373.1| hypothetical protein BRAFLDRAFT_236186 [Branchiostoma floridae]
gi|229294729|gb|EEN65383.1| hypothetical protein BRAFLDRAFT_236186 [Branchiostoma floridae]
Length = 336
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 89/188 (47%), Gaps = 35/188 (18%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEE-------------EVIRFQS 132
+LL E+W ELF+L AQ+ +D G L+ + S + ++ +
Sbjct: 171 ILLEEAWNELFVLSAAQWAMPIDPGSLLTAATSSPASADRVIQSSEQSSLLMADIRGLRD 230
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
V + F+ +DP EY ++AI LFK+ D R LRD + A
Sbjct: 231 VTSRFQEAQVDPTEYACLKAIVLFKS-------DARG--------------LRDAGQVQA 269
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
+Q QI L +YI + RF ++ L+LP L+ + + LEELFFR IG N I++
Sbjct: 270 VQDQAQIMLGEYIASKNSEDKVRFGRLLLLLPALRGVRARGLEELFFRPTIG-NIPIERL 328
Query: 253 IWHMYKNA 260
+ M+K++
Sbjct: 329 LCDMFKSS 336
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 13/86 (15%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEE-------------EVIRFQS 48
+LL E+W ELF+L AQ+ +D G L+ + S + ++ +
Sbjct: 171 ILLEEAWNELFVLSAAQWAMPIDPGSLLTAATSSPASADRVIQSSEQSSLLMADIRGLRD 230
Query: 49 VLNEFKVLNIDPYEYDYIRAITLFKT 74
V + F+ +DP EY ++AI LFK+
Sbjct: 231 VTSRFQEAQVDPTEYACLKAIVLFKS 256
>gi|118343705|ref|NP_001071673.1| nuclear receptor [Ciona intestinalis]
gi|70569140|dbj|BAE06356.1| nuclear receptor [Ciona intestinalis]
Length = 416
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 28/165 (16%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC-------KSRHVDIEEEVIRFQSVLNEFKV 139
+L W ELF+L AQ L + L+ + R + + + FQ + K
Sbjct: 246 MLKWVWSELFVLNAAQSHMPLHVAPLLAAAGLHTSMSADRVMTFMDHIRIFQEQVERLKS 305
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQI 199
L++D EY ++AI LF ++ G L D+ I ++Q +Q
Sbjct: 306 LHVDSAEYSCLKAIVLF--------------TADSHG-------LSDMTHIESVQEKSQC 344
Query: 200 FLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L +Y+ YP+QP+RF K+ L LP L+++ + +E+LFF ++G
Sbjct: 345 ALEEYVRHQYPNQPSRFGKLLLRLPSLRTVSASAIEQLFFVRLVG 389
>gi|241707738|ref|XP_002403220.1| zinc finger, C4 type, putative [Ixodes scapularis]
gi|215505031|gb|EEC14525.1| zinc finger, C4 type, putative [Ixodes scapularis]
Length = 299
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 87/204 (42%), Gaps = 58/204 (28%)
Query: 65 YIRAITLFKTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVE--------SC 116
+++ +T TA R +L LL E WRELF+L AQ++ L++ L+ S
Sbjct: 144 WMKTVTAL-TALPMRDQLT---LLEEGWRELFVLSAAQFMLPLEVAPLLAAAGLSSEPST 199
Query: 117 KSRHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDG 176
R + E+ FQ ++ FK + +D EY ++AI LFKT SS++
Sbjct: 200 SERVATLVSEIRNFQEIIARFKEMQVDATEYACVKAILLFKTC---------ECSSTN-- 248
Query: 177 SEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEE 236
P RF K+ L LP L+++ + +E+
Sbjct: 249 ----------------------------------CMPFRFGKLLLTLPCLRTVSATAIED 274
Query: 237 LFFRNIIGHNTTIKKTIWHMYKNA 260
LFFR IG I++ + MYK+
Sbjct: 275 LFFRKTIG-AIPIERLLCDMYKSG 297
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVE--------SCKSRHVDIEEEVIRFQSVLNEFK 54
LL E WRELF+L AQ++ L++ L+ S R + E+ FQ ++ FK
Sbjct: 162 LLEEGWRELFVLSAAQFMLPLEVAPLLAAAGLSSEPSTSERVATLVSEIRNFQEIIARFK 221
Query: 55 VLNIDPYEYDYIRAITLFKTAFTS 78
+ +D EY ++AI LFKT S
Sbjct: 222 EMQVDATEYACVKAILLFKTCECS 245
>gi|57231806|gb|AAW47616.1| tailless [Drosophila americana]
Length = 389
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 72/134 (53%), Gaps = 14/134 (10%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD------IEEEVIRFQSVLNEFKV 139
LLL ESW+E FIL +AQYL ++ +L+ +S + + + EV FQ VLN+
Sbjct: 254 LLLEESWKEFFILAMAQYLMPMNFAQLLFVYESENANREIVTIVAREVHAFQDVLNQLCH 313
Query: 140 LNIDPYEYDYIRAITLF-KTVIEDEVKDNRSSSSSDDGSEHPESC-------LRDVIAIA 191
LNID EY+ +RAI+LF K+ ++ ++SS GS P S L + +A
Sbjct: 314 LNIDSTEYECLRAISLFRKSPPAASSTEDLANSSILTGSGSPNSSASAESRGLLESSKVA 373
Query: 192 AIQGHTQIFLNKYI 205
A+Q + L+ YI
Sbjct: 374 AMQNDARNALHNYI 387
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 58/99 (58%), Gaps = 9/99 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD------IEEEVIRFQSVLNEFKV 55
LLL ESW+E FIL +AQYL ++ +L+ +S + + + EV FQ VLN+
Sbjct: 254 LLLEESWKEFFILAMAQYLMPMNFAQLLFVYESENANREIVTIVAREVHAFQDVLNQLCH 313
Query: 56 LNIDPYEYDYIRAITLFK---TAFTSRRELAGHLLLAES 91
LNID EY+ +RAI+LF+ A +S +LA +L S
Sbjct: 314 LNIDSTEYECLRAISLFRKSPPAASSTEDLANSSILTGS 352
>gi|221124181|ref|XP_002154441.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Hydra
magnipapillata]
Length = 438
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 84/181 (46%), Gaps = 28/181 (15%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIE------EEVIRFQSVLNEFKV 139
LLL ESW ELFIL + QY ++LG L+ S + + + +E+ Q ++ F+
Sbjct: 278 LLLEESWSELFILSMIQYSEPIELGVLLYSIGAENASSQKGSNDIQELQTLQQIVYRFQN 337
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQI 199
L ID E+ ++A LFK +E LR I +Q + Q
Sbjct: 338 LAIDCTEFACLKATVLFKPDLEG---------------------LRCGQYIENLQDYAQS 376
Query: 200 FLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKN 259
L +Y+ +P P RF K+ L+LP L++I + L +LF + + I K + M K
Sbjct: 377 MLGEYVRNTHPQTPARFGKLLLLLPSLRAIGAKTLIKLFLKGDTDQ-SPIDKVLHDMRKT 435
Query: 260 A 260
+
Sbjct: 436 S 436
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIE------EEVIRFQSVLNEFKV 55
LLL ESW ELFIL + QY ++LG L+ S + + + +E+ Q ++ F+
Sbjct: 278 LLLEESWSELFILSMIQYSEPIELGVLLYSIGAENASSQKGSNDIQELQTLQQIVYRFQN 337
Query: 56 LNIDPYEYDYIRAITLFK 73
L ID E+ ++A LFK
Sbjct: 338 LAIDCTEFACLKATVLFK 355
>gi|297263121|ref|XP_001091445.2| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Macaca mulatta]
Length = 596
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 80/198 (40%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 406 AFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRI 465
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N L+ID YEY Y++AI LF S+HP
Sbjct: 466 KQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFX-------------------SDHP 506
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ Y R +I + LP L+ + S + EELFF
Sbjct: 507 G--LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFT 564
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N +I I ++ K
Sbjct: 565 GLIG-NVSIDSIIPYILK 581
Score = 43.9 bits (102), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 14/86 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 418 LVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE 477
Query: 49 VLNEFKVLNIDPYEYDYIRAITLFKT 74
N L+ID YEY Y++AI LF +
Sbjct: 478 FCNSMAKLDIDGYEYAYLKAIVLFXS 503
>gi|224066723|ref|XP_002189996.1| PREDICTED: nuclear receptor subfamily 2 group C member 2
[Taeniopygia guttata]
Length = 629
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 81/198 (40%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDL----GELVESCKS----------RH 120
AF + + L+ W ELF LGLAQ + L G +V ++ R
Sbjct: 439 AFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILGAIVNHLQNSIQEDKLSGDRI 498
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N ++ID YEY Y++AI LF +HP
Sbjct: 499 KQVMEHIWKLQEFCNSMAKIDIDGYEYAYLKAIVLFS-------------------PDHP 539
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ YP R +I + LP L+ + S + EELFF
Sbjct: 540 G--LTSSTQIEKFQEKAQMELQDYVQKTYPEDTYRLARILVRLPALRLMSSSITEELFFT 597
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N I I ++ K
Sbjct: 598 GLIG-NVPIDSIIPYILK 614
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDL----GELVESCKS----------RHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L G +V ++ R + E + + Q
Sbjct: 451 LVRACWNELFTLGLAQCAQVMSLSTILGAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE 510
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N ++ID YEY Y++AI LF
Sbjct: 511 FCNSMAKIDIDGYEYAYLKAIVLF 534
>gi|405966658|gb|EKC31918.1| Nuclear receptor subfamily 2 group C member 2 [Crassostrea gigas]
Length = 707
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 77/173 (44%), Gaps = 35/173 (20%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELV--------------ESCKSRHVDIEEEVIRFQ 131
+L+ SW ELF LGLAQ S+ L ++ ++ R + + +++ Q
Sbjct: 484 ILVKSSWSELFTLGLAQCAQSMSLSTILMAILNHLQTALQQDKNSAERVKLVIDHILKLQ 543
Query: 132 SVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIA 191
+ + + L ID E+ Y++A+ LF S D S L + I
Sbjct: 544 NYIQSLEALQIDSEEFAYLKALVLF---------------SPDTPS------LPNAPQIE 582
Query: 192 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
+Q Q L ++ +PS P R K+ L LP L S+ V+EELFF +IG
Sbjct: 583 RVQDRAQRELANHVRQTHPSNPDRLAKLLLRLPALHSLSPSVMEELFFAGLIG 635
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 28/113 (24%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELV--------------ESCKSRHVDIEEEVIRFQ 47
+L+ SW ELF LGLAQ S+ L ++ ++ R + + +++ Q
Sbjct: 484 ILVKSSWSELFTLGLAQCAQSMSLSTILMAILNHLQTALQQDKNSAERVKLVIDHILKLQ 543
Query: 48 SVLNEFKVLNIDPYEYDYIRAITLFKTAFTS--------------RRELAGHL 86
+ + + L ID E+ Y++A+ LF S +RELA H+
Sbjct: 544 NYIQSLEALQIDSEEFAYLKALVLFSPDTPSLPNAPQIERVQDRAQRELANHV 596
>gi|47223192|emb|CAG11327.1| unnamed protein product [Tetraodon nigroviridis]
Length = 577
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 83/198 (41%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESC----KSRHVD-------- 122
AF++ + A L+ W ELFILGLAQ ++L ++ + +S D
Sbjct: 392 AFSALGQEANTSLMRSCWNELFILGLAQCAHVMNLSTILTAIINHLQSSFQDDKLSGEKV 451
Query: 123 --IEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E V +FQ N L D YEY Y++AI LF +HP
Sbjct: 452 KQVTEHVWKFQEFCNSMTRLETDSYEYAYLKAIVLFS-------------------PDHP 492
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
+ I Q + L Y+ YP R +I LP L+ + S + EELFF
Sbjct: 493 G--VDGSGQIEKFQEKALMELQDYVQKAYPDDTYRLTRILTRLPALRLMNSSITEELFFT 550
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N +I I ++ K
Sbjct: 551 GLIG-NVSIDSIIPYILK 567
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC----KSRHVD----------IEEEVIRFQS 48
L+ W ELFILGLAQ ++L ++ + +S D + E V +FQ
Sbjct: 404 LMRSCWNELFILGLAQCAHVMNLSTILTAIINHLQSSFQDDKLSGEKVKQVTEHVWKFQE 463
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L D YEY Y++AI LF
Sbjct: 464 FCNSMTRLETDSYEYAYLKAIVLF 487
>gi|297263119|ref|XP_002798750.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Macaca mulatta]
Length = 648
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 80/198 (40%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 458 AFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRI 517
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N L+ID YEY Y++AI LF S+HP
Sbjct: 518 KQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFX-------------------SDHP 558
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ Y R +I + LP L+ + S + EELFF
Sbjct: 559 G--LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFT 616
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N +I I ++ K
Sbjct: 617 GLIG-NVSIDSIIPYILK 633
Score = 43.5 bits (101), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 14/86 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 470 LVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE 529
Query: 49 VLNEFKVLNIDPYEYDYIRAITLFKT 74
N L+ID YEY Y++AI LF +
Sbjct: 530 FCNSMAKLDIDGYEYAYLKAIVLFXS 555
>gi|405966252|gb|EKC31559.1| Nuclear receptor subfamily 2 group C member 2 [Crassostrea gigas]
Length = 622
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 91/184 (49%), Gaps = 33/184 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEE---------EVIRFQSVLNE 136
+LL ESW ELF+L AQ+ ++D+G L+ S +D + ++ + Q ++
Sbjct: 463 ILLEESWCELFVLSAAQWSLNIDIGFLL-SANGYTLDGPKMEKTTLMSLQLRQLQDIIYR 521
Query: 137 FKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGH 196
+ +D EY ++A+ LFK ++ LRD + + A+Q
Sbjct: 522 LNGIRLDSTEYACLKALLLFKPDVKG---------------------LRDSLQVEALQDQ 560
Query: 197 TQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
QI L Y+ + TRF ++ L LP L+++ S +E++FFR IG N I++ + M
Sbjct: 561 AQIMLYDYVSNQKLLK-TRFGRLLLQLPALRNVSSRAVEDIFFRRTIG-NIPIERILCDM 618
Query: 257 YKNA 260
+K++
Sbjct: 619 FKSS 622
>gi|156378253|ref|XP_001631058.1| predicted protein [Nematostella vectensis]
gi|156218091|gb|EDO38995.1| predicted protein [Nematostella vectensis]
Length = 378
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 95/199 (47%), Gaps = 41/199 (20%)
Query: 64 DYIRAITLFKTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESC-----KS 118
D+ ++I+ F+ A ++A LL ++W ++F+LG+AQ + + L L+ +S
Sbjct: 183 DWTQSISAFR-ALHKCDQIA---LLCKTWADIFLLGVAQSISNFPLSPLLSLAAKDIQQS 238
Query: 119 RHVDIE------------EEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKD 166
D + E++I + V+ F+ LN+D E+ Y++A+ LF
Sbjct: 239 EAQDPKPPKNIPGQKNTFEKIIAIKDVMFSFEKLNLDATEFAYLKAVVLF---------- 288
Query: 167 NRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYP-SQPTRFCKIQLILPR 225
+SSD P +C++D + +Q + L YI + YP RF KI L LP
Sbjct: 289 ----NSSD-----PYTCVQDQKQVDKLQEQSHCGLKSYIDSKYPIGNSGRFAKILLRLPS 339
Query: 226 LKSIPSLVLEELFFRNIIG 244
L I +EELFF ++G
Sbjct: 340 LHLIDRFDVEELFFAPLLG 358
Score = 40.4 bits (93), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 17/90 (18%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC-----KSRHVDIE------------EEVIR 45
LL ++W ++F+LG+AQ + + L L+ +S D + E++I
Sbjct: 202 LLCKTWADIFLLGVAQSISNFPLSPLLSLAAKDIQQSEAQDPKPPKNIPGQKNTFEKIIA 261
Query: 46 FQSVLNEFKVLNIDPYEYDYIRAITLFKTA 75
+ V+ F+ LN+D E+ Y++A+ LF ++
Sbjct: 262 IKDVMFSFEKLNLDATEFAYLKAVVLFNSS 291
>gi|118777094|ref|XP_307453.3| Anopheles gambiae str. PEST AGAP012600-PA [Anopheles gambiae str.
PEST]
gi|116133146|gb|EAA03055.4| AGAP012600-PA [Anopheles gambiae str. PEST]
Length = 202
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 90/186 (48%), Gaps = 34/186 (18%)
Query: 86 LLLAESWRELFILGLAQYLPSLD-----LGELVESCKS-------RHVDIEEEVIRFQSV 133
+LL ESW ELF+L Q+ +D L L E C S + + + +
Sbjct: 39 ILLEESWAELFLLNAIQWCMPIDTTACTLFSLNEHCNSANNSGFFKPGQVNDNLRILNDT 98
Query: 134 LNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAI 193
L FK + +DP E+ ++AI LF++ E + L+D + I +
Sbjct: 99 LCRFKSVLVDPAEFACMKAIVLFRS----EARG-----------------LKDPVQIENL 137
Query: 194 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTI 253
Q Q+ L ++ T +P Q RF ++ L+LP L+++ S +E ++F+ IG NT ++K +
Sbjct: 138 QDQAQVMLAQHSRTQFPGQIARFGRLLLMLPLLRAVNSHKIESIYFQKTIG-NTPMEKVL 196
Query: 254 WHMYKN 259
MYKN
Sbjct: 197 CDMYKN 202
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Query: 2 LLLAESWRELFILGLAQYLPSLD-----LGELVESCKS-------RHVDIEEEVIRFQSV 49
+LL ESW ELF+L Q+ +D L L E C S + + + +
Sbjct: 39 ILLEESWAELFLLNAIQWCMPIDTTACTLFSLNEHCNSANNSGFFKPGQVNDNLRILNDT 98
Query: 50 LNEFKVLNIDPYEYDYIRAITLFKT 74
L FK + +DP E+ ++AI LF++
Sbjct: 99 LCRFKSVLVDPAEFACMKAIVLFRS 123
>gi|297592502|gb|ADI47122.1| tailless [Polyrhachis vicina]
Length = 419
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 47/72 (65%)
Query: 88 LAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLNIDPYEY 147
L +SWRELFIL AQYLP LDL L+E + I EV F+ L + + + +DP+EY
Sbjct: 242 LEDSWRELFILAAAQYLPPLDLTHLLEIEGELNRAICWEVSCFRETLADIRQMRLDPHEY 301
Query: 148 DYIRAITLFKTV 159
YIRA+ LFK++
Sbjct: 302 VYIRALVLFKSI 313
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 47/74 (63%)
Query: 4 LAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLNIDPYEY 63
L +SWRELFIL AQYLP LDL L+E + I EV F+ L + + + +DP+EY
Sbjct: 242 LEDSWRELFILAAAQYLPPLDLTHLLEIEGELNRAICWEVSCFRETLADIRQMRLDPHEY 301
Query: 64 DYIRAITLFKTAFT 77
YIRA+ LFK+ +
Sbjct: 302 VYIRALVLFKSIYA 315
>gi|60360544|dbj|BAD90516.1| mKIAA4145 protein [Mus musculus]
Length = 363
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 79/198 (39%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 173 AFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRI 232
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N L+ID YEY Y++AI LF +HP
Sbjct: 233 KQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFS-------------------PDHP 273
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ Y R +I + LP L+ + S + EELFF
Sbjct: 274 --GLTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFT 331
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N +I I ++ K
Sbjct: 332 GLIG-NVSIDSIIPYILK 348
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 14/85 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 185 LVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE 244
Query: 49 VLNEFKVLNIDPYEYDYIRAITLFK 73
N L+ID YEY Y++AI LF
Sbjct: 245 FCNSMAKLDIDGYEYAYLKAIVLFS 269
>gi|410899971|ref|XP_003963470.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
C member 2-like [Takifugu rubripes]
Length = 629
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 81/198 (40%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF++ + A L+ W ELFILGLAQ ++L ++ + +
Sbjct: 439 AFSALGQEANTSLMRSCWNELFILGLAQCAHVMNLSTILTAIINHLQSSIQDDKLSGEKV 498
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E V +FQ N L D YEY Y++AI +F +HP
Sbjct: 499 KQVMEHVWKFQEFCNSMTRLETDSYEYAYLKAIXVFS-------------------PDHP 539
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q + L Y+ YP R +I LP L+ + S + EELFF
Sbjct: 540 G--LDGSGQIEKFQEKALMELQDYVQKTYPDDMYRLTRILTRLPALRLMNSSITEELFFT 597
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N +I I ++ K
Sbjct: 598 GLIG-NVSIDSIIPYILK 614
Score = 43.9 bits (102), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELFILGLAQ ++L ++ + + + E V +FQ
Sbjct: 451 LMRSCWNELFILGLAQCAHVMNLSTILTAIINHLQSSIQDDKLSGEKVKQVMEHVWKFQE 510
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L D YEY Y++AI +F
Sbjct: 511 FCNSMTRLETDSYEYAYLKAIXVF 534
>gi|72148318|ref|XP_795547.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Strongylocentrotus purpuratus]
Length = 483
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 75/171 (43%), Gaps = 34/171 (19%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEE-------------VIRFQSV 133
LL E W ELF+L A Y P D L+ R D + E V Q +
Sbjct: 323 LLQECWAELFLL-HAAYWPPADFCALLSHSHLRMDDAKTETDSKGATRRKSEVVDDIQEI 381
Query: 134 LNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAI 193
+ LN+ +E+ ++ AI LFK D + + LR+ +
Sbjct: 382 TVRLRTLNLSTHEFAFLEAIVLFKP-------DTKGT-------------LREKSKVEFF 421
Query: 194 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
+ +Q+ L +Y + V+P P RF K+ L +P LK + + LEELFFR +G
Sbjct: 422 RDQSQVVLAQYENIVHPESPARFGKLLLTMPALKRVGTENLEELFFRRTLG 472
>gi|355786362|gb|EHH66545.1| hypothetical protein EGM_03558, partial [Macaca fascicularis]
Length = 572
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 79/198 (39%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 382 AFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRI 441
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N L+ID YEY Y++AI LF +HP
Sbjct: 442 KQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFS-------------------PDHP 482
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ Y R +I + LP L+ + S + EELFF
Sbjct: 483 G--LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFT 540
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N +I I ++ K
Sbjct: 541 GLIG-NVSIDSIIPYILK 557
Score = 43.5 bits (101), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 394 LVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE 453
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L+ID YEY Y++AI LF
Sbjct: 454 FCNSMAKLDIDGYEYAYLKAIVLF 477
>gi|311772275|pdb|3P0U|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Human
Testicular Receptor 4
gi|311772276|pdb|3P0U|B Chain B, Crystal Structure Of The Ligand Binding Domain Of Human
Testicular Receptor 4
Length = 249
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 79/198 (39%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 59 AFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRI 118
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N L+ID YEY Y++AI LF +HP
Sbjct: 119 KQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFS-------------------PDHP 159
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ Y R +I + LP L+ + S + EELFF
Sbjct: 160 G--LTSTSQIEKFQEAAQMELQDYVQATYSEDTYRLARILVRLPALRLMSSNITEELFFT 217
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N +I I ++ K
Sbjct: 218 GLIG-NVSIDSIIPYILK 234
Score = 43.5 bits (101), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 14/85 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 71 LVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE 130
Query: 49 VLNEFKVLNIDPYEYDYIRAITLFK 73
N L+ID YEY Y++AI LF
Sbjct: 131 FCNSMAKLDIDGYEYAYLKAIVLFS 155
>gi|216409724|dbj|BAH02299.1| nuclear receptor subfamily 2, group C, member 2 [Homo sapiens]
Length = 596
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 79/198 (39%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 406 AFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRI 465
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N L+ID YEY Y++AI LF +HP
Sbjct: 466 KQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFS-------------------PDHP 506
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ Y R +I + LP L+ + S + EELFF
Sbjct: 507 G--LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFT 564
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N +I I ++ K
Sbjct: 565 GLIG-NVSIDSIIPYILK 581
Score = 43.5 bits (101), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 418 LVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE 477
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L+ID YEY Y++AI LF
Sbjct: 478 FCNSMAKLDIDGYEYAYLKAIVLF 501
>gi|260808486|ref|XP_002599038.1| hypothetical protein BRAFLDRAFT_245659 [Branchiostoma floridae]
gi|229284314|gb|EEN55050.1| hypothetical protein BRAFLDRAFT_245659 [Branchiostoma floridae]
Length = 198
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 74/166 (44%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDL----GELVESCKSRHVD---IEEEVIRFQSVLNEFK 138
LLL W +LF +GLAQ + G+ + VD E EV + Q+ + +
Sbjct: 38 LLLTSGWSDLFTVGLAQSRVQFNTEPAGGDRIFVRLRASVDGIPTETEVAKIQNFVERCQ 97
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
VL++D E+ Y+ A LF N DG + + +Q
Sbjct: 98 VLDLDMKEHSYLMAALLF----------NPDVPGLADGRQ-----------VEILQNSAH 136
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
LN+Y YP QP RF +I L LP L+SI ++ ELFFR +IG
Sbjct: 137 QSLNEYTTARYPLQPLRFARILLGLPALRSIKPKIVTELFFRPLIG 182
>gi|395847192|ref|XP_003796267.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Otolemur garnettii]
gi|395847194|ref|XP_003796268.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Otolemur garnettii]
Length = 596
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 79/198 (39%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 406 AFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRI 465
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N L+ID YEY Y++AI LF +HP
Sbjct: 466 KQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFS-------------------PDHP 506
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ Y R +I + LP L+ + S + EELFF
Sbjct: 507 G--LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFT 564
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N +I I ++ K
Sbjct: 565 GLIG-NVSIDSIIPYILK 581
Score = 43.5 bits (101), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 418 LVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE 477
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L+ID YEY Y++AI LF
Sbjct: 478 FCNSMAKLDIDGYEYAYLKAIVLF 501
>gi|281347589|gb|EFB23173.1| hypothetical protein PANDA_010183 [Ailuropoda melanoleuca]
Length = 572
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 79/198 (39%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 382 AFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRI 441
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N L+ID YEY Y++AI LF +HP
Sbjct: 442 KQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFS-------------------PDHP 482
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ Y R +I + LP L+ + S + EELFF
Sbjct: 483 G--LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFT 540
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N +I I ++ K
Sbjct: 541 GLIG-NVSIDSIIPYILK 557
Score = 43.5 bits (101), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 394 LVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE 453
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L+ID YEY Y++AI LF
Sbjct: 454 FCNSMAKLDIDGYEYAYLKAIVLF 477
>gi|20806167|ref|NP_620813.1| nuclear receptor subfamily 2 group F member 6 [Rattus norvegicus]
gi|10720384|sp|O09017.1|NR2F6_RAT RecName: Full=Nuclear receptor subfamily 2 group F member 6;
AltName: Full=COUPg; AltName: Full=Ovalbumin upstream
promoter gamma nuclear receptor; AltName:
Full=V-erbA-related protein 2; Short=EAR-2
gi|2197123|gb|AAB61296.1| ovalbumin upstream promoter gamma nuclear receptor rCOUPg [Rattus
norvegicus]
Length = 390
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 84/179 (46%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL SW ELF+L AQ L L+ + R V ++V FQ +++
Sbjct: 221 LLRLSWSELFVLNAAQAPVPLHTAPLLAAAGLHAGPMAAERAVAFMDQVRAFQEQVDKLG 280
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L +D EY ++AI LF P++C L D + ++Q
Sbjct: 281 RLQVDAAEYGCLKAIALFT----------------------PDACGLSDPAHVESLQEKA 318
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+ I M
Sbjct: 319 QVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIETLIRDM 376
>gi|114585553|ref|XP_001158452.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 3
[Pan troglodytes]
gi|296225930|ref|XP_002758705.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Callithrix jacchus]
gi|297670033|ref|XP_002813184.1| PREDICTED: uncharacterized protein LOC100448384 isoform 1 [Pongo
abelii]
gi|390475359|ref|XP_003734943.1| PREDICTED: nuclear receptor subfamily 2 group C member 2
[Callithrix jacchus]
gi|397511831|ref|XP_003826268.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Pan paniscus]
gi|402887045|ref|XP_003906916.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Papio anubis]
gi|403268295|ref|XP_003926213.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Saimiri boliviensis boliviensis]
gi|410036591|ref|XP_003950084.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 [Pan
troglodytes]
gi|1351190|sp|P49116.1|NR2C2_HUMAN RecName: Full=Nuclear receptor subfamily 2 group C member 2;
AltName: Full=Orphan nuclear receptor TAK1; AltName:
Full=Orphan nuclear receptor TR4; AltName:
Full=Testicular receptor 4
gi|758382|gb|AAC50118.1| hTAK1 [Homo sapiens]
gi|119584619|gb|EAW64215.1| nuclear receptor subfamily 2, group C, member 2, isoform CRA_b
[Homo sapiens]
gi|158254612|dbj|BAF83279.1| unnamed protein product [Homo sapiens]
Length = 596
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 79/198 (39%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 406 AFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRI 465
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N L+ID YEY Y++AI LF +HP
Sbjct: 466 KQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFS-------------------PDHP 506
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ Y R +I + LP L+ + S + EELFF
Sbjct: 507 G--LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFT 564
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N +I I ++ K
Sbjct: 565 GLIG-NVSIDSIIPYILK 581
Score = 43.5 bits (101), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 418 LVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE 477
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L+ID YEY Y++AI LF
Sbjct: 478 FCNSMAKLDIDGYEYAYLKAIVLF 501
>gi|149728243|ref|XP_001491080.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Equus caballus]
Length = 596
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 79/198 (39%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 406 AFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRI 465
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N L+ID YEY Y++AI LF +HP
Sbjct: 466 KQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFS-------------------PDHP 506
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ Y R +I + LP L+ + S + EELFF
Sbjct: 507 G--LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFT 564
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N +I I ++ K
Sbjct: 565 GLIG-NVSIDSIIPYILK 581
Score = 43.5 bits (101), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 418 LVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE 477
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L+ID YEY Y++AI LF
Sbjct: 478 FCNSMAKLDIDGYEYAYLKAIVLF 501
>gi|410951776|ref|XP_003982569.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Felis catus]
Length = 615
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 79/198 (39%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 425 AFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRI 484
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N L+ID YEY Y++AI LF +HP
Sbjct: 485 KQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFS-------------------PDHP 525
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ Y R +I + LP L+ + S + EELFF
Sbjct: 526 G--LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFT 583
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N +I I ++ K
Sbjct: 584 GLIG-NVSIDSIIPYILK 600
Score = 43.5 bits (101), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 437 LVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE 496
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L+ID YEY Y++AI LF
Sbjct: 497 FCNSMAKLDIDGYEYAYLKAIVLF 520
>gi|431916906|gb|ELK16662.1| Nuclear receptor subfamily 2 group C member 2 [Pteropus alecto]
Length = 596
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 79/198 (39%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 406 AFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRI 465
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N L+ID YEY Y++AI LF +HP
Sbjct: 466 KQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFS-------------------PDHP 506
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ Y R +I + LP L+ + S + EELFF
Sbjct: 507 G--LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFT 564
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N +I I ++ K
Sbjct: 565 GLIG-NVSIDSIIPYILK 581
Score = 43.5 bits (101), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 418 LVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE 477
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L+ID YEY Y++AI LF
Sbjct: 478 FCNSMAKLDIDGYEYAYLKAIVLF 501
>gi|149036770|gb|EDL91388.1| rCG56527, isoform CRA_c [Rattus norvegicus]
Length = 596
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 79/198 (39%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 406 AFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRI 465
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N L+ID YEY Y++AI LF +HP
Sbjct: 466 KQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFS-------------------PDHP 506
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ Y R +I + LP L+ + S + EELFF
Sbjct: 507 G--LTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFT 564
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N +I I ++ K
Sbjct: 565 GLIG-NVSIDSIIPYILK 581
Score = 43.5 bits (101), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 418 LVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE 477
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L+ID YEY Y++AI LF
Sbjct: 478 FCNSMAKLDIDGYEYAYLKAIVLF 501
>gi|345786121|ref|XP_541755.3| PREDICTED: nuclear receptor subfamily 2 group C member 2 [Canis
lupus familiaris]
Length = 596
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 79/198 (39%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 406 AFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRI 465
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N L+ID YEY Y++AI LF +HP
Sbjct: 466 KQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFS-------------------PDHP 506
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ Y R +I + LP L+ + S + EELFF
Sbjct: 507 G--LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFT 564
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N +I I ++ K
Sbjct: 565 GLIG-NVSIDSIIPYILK 581
Score = 43.5 bits (101), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 418 LVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE 477
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L+ID YEY Y++AI LF
Sbjct: 478 FCNSMAKLDIDGYEYAYLKAIVLF 501
>gi|426249719|ref|XP_004018597.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 [Ovis
aries]
Length = 596
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 79/198 (39%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 406 AFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRI 465
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N L+ID YEY Y++AI LF +HP
Sbjct: 466 KQVMEHIWKLQEFCNSMARLDIDGYEYAYLKAIVLFS-------------------PDHP 506
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ Y R +I + LP L+ + S + EELFF
Sbjct: 507 G--LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSSITEELFFT 564
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N +I I ++ K
Sbjct: 565 GLIG-NVSIDSIIPYILK 581
Score = 43.5 bits (101), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 418 LVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE 477
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L+ID YEY Y++AI LF
Sbjct: 478 FCNSMARLDIDGYEYAYLKAIVLF 501
>gi|354465507|ref|XP_003495221.1| PREDICTED: nuclear receptor subfamily 2 group C member 2
[Cricetulus griseus]
gi|344241619|gb|EGV97722.1| Nuclear receptor subfamily 2 group C member 2 [Cricetulus griseus]
Length = 596
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 79/198 (39%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 406 AFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRI 465
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N L+ID YEY Y++AI LF +HP
Sbjct: 466 KQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFS-------------------PDHP 506
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ Y R +I + LP L+ + S + EELFF
Sbjct: 507 G--LTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFT 564
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N +I I ++ K
Sbjct: 565 GLIG-NVSIDSIIPYILK 581
Score = 43.5 bits (101), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 418 LVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE 477
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L+ID YEY Y++AI LF
Sbjct: 478 FCNSMAKLDIDGYEYAYLKAIVLF 501
>gi|363745928|ref|XP_003643465.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-B-like
[Gallus gallus]
Length = 300
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 84/179 (46%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL SW ELF+L AQ L + L+ + R V +++ FQ + +
Sbjct: 130 LLRLSWSELFVLNAAQSALPLHMAPLLAAAGFHASPMSADRVVSFMDQIRIFQDQVEKLN 189
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L +D EY ++AI LF P++C L D + +Q
Sbjct: 190 RLQVDSAEYSCLKAIALFT----------------------PDACGLSDPAHVEGLQEKA 227
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q+ L +Y+ + YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+ I M
Sbjct: 228 QVALTEYVRSQYPSQPQRFGRLLLRLPALRAVPAALISQLFFMRLVG-KTPIETLIRDM 285
Score = 36.6 bits (83), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL SW ELF+L AQ L + L+ + R V +++ FQ + +
Sbjct: 130 LLRLSWSELFVLNAAQSALPLHMAPLLAAAGFHASPMSADRVVSFMDQIRIFQDQVEKLN 189
Query: 55 VLNIDPYEYDYIRAITLF 72
L +D EY ++AI LF
Sbjct: 190 RLQVDSAEYSCLKAIALF 207
>gi|67906168|ref|NP_035760.1| nuclear receptor subfamily 2 group C member 2 [Mus musculus]
gi|1351191|sp|P49117.1|NR2C2_MOUSE RecName: Full=Nuclear receptor subfamily 2 group C member 2;
AltName: Full=Orphan nuclear receptor TAK1; AltName:
Full=Orphan nuclear receptor TR4; AltName:
Full=Testicular receptor 4
gi|885593|gb|AAA93150.1| orphan receptor TAK1 [Mus musculus]
gi|73909027|gb|AAI03684.1| Nr2c2 protein [Mus musculus]
gi|73909185|gb|AAI03685.1| Nr2c2 protein [Mus musculus]
gi|74210203|dbj|BAE23331.1| unnamed protein product [Mus musculus]
Length = 596
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 79/198 (39%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 406 AFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRI 465
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N L+ID YEY Y++AI LF +HP
Sbjct: 466 KQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFS-------------------PDHP 506
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ Y R +I + LP L+ + S + EELFF
Sbjct: 507 G--LTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFT 564
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N +I I ++ K
Sbjct: 565 GLIG-NVSIDSIIPYILK 581
Score = 43.5 bits (101), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 418 LVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE 477
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L+ID YEY Y++AI LF
Sbjct: 478 FCNSMAKLDIDGYEYAYLKAIVLF 501
>gi|410951774|ref|XP_003982568.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Felis catus]
Length = 596
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 79/198 (39%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 406 AFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRI 465
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N L+ID YEY Y++AI LF +HP
Sbjct: 466 KQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFS-------------------PDHP 506
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ Y R +I + LP L+ + S + EELFF
Sbjct: 507 G--LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFT 564
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N +I I ++ K
Sbjct: 565 GLIG-NVSIDSIIPYILK 581
Score = 43.5 bits (101), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 418 LVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE 477
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L+ID YEY Y++AI LF
Sbjct: 478 FCNSMAKLDIDGYEYAYLKAIVLF 501
>gi|350591455|ref|XP_003483272.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Sus scrofa]
Length = 609
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 79/198 (39%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 419 AFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRI 478
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N L+ID YEY Y++AI LF +HP
Sbjct: 479 KQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFS-------------------PDHP 519
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ Y R +I + LP L+ + S + EELFF
Sbjct: 520 G--LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFT 577
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N +I I ++ K
Sbjct: 578 GLIG-NVSIDSIIPYILK 594
Score = 43.5 bits (101), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 431 LVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE 490
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L+ID YEY Y++AI LF
Sbjct: 491 FCNSMAKLDIDGYEYAYLKAIVLF 514
>gi|432110921|gb|ELK34395.1| Nuclear receptor subfamily 2 group C member 2 [Myotis davidii]
Length = 596
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 79/198 (39%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 406 AFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRI 465
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N L+ID YEY Y++AI LF +HP
Sbjct: 466 KQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFS-------------------PDHP 506
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ Y R +I + LP L+ + S + EELFF
Sbjct: 507 G--LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFT 564
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N +I I ++ K
Sbjct: 565 GLIG-NVSIDSIIPYILK 581
Score = 43.5 bits (101), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 418 LVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE 477
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L+ID YEY Y++AI LF
Sbjct: 478 FCNSMAKLDIDGYEYAYLKAIVLF 501
>gi|170065210|ref|XP_001867845.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167882297|gb|EDS45680.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 505
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 91/186 (48%), Gaps = 34/186 (18%)
Query: 86 LLLAESWRELFILGLAQY-LP----SLDLGELVESCKS-------RHVDIEEEVIRFQSV 133
+LL ESW ELF+L Q+ +P + L L E C S + + +++
Sbjct: 342 ILLEESWAELFLLNAIQWCMPIETSACTLFSLNEHCSSVNNSGIFKPGQLAQDLRVLNDT 401
Query: 134 LNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAI 193
L FK + +DP E+ ++AI LF++ E + L+D + I +
Sbjct: 402 LCRFKSVMVDPAEFACMKAIVLFRS----EARG-----------------LKDPVQIENL 440
Query: 194 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTI 253
Q Q+ L ++ T +P Q RF ++ L+LP L+ I S +E ++F+ IG NT ++K +
Sbjct: 441 QDQAQVMLAQHSRTQFPGQIARFGRLLLMLPLLRIINSHKIESIYFQKTIG-NTPMEKVL 499
Query: 254 WHMYKN 259
MYKN
Sbjct: 500 CDMYKN 505
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 12/85 (14%)
Query: 2 LLLAESWRELFILGLAQY-LP----SLDLGELVESCKS-------RHVDIEEEVIRFQSV 49
+LL ESW ELF+L Q+ +P + L L E C S + + +++
Sbjct: 342 ILLEESWAELFLLNAIQWCMPIETSACTLFSLNEHCSSVNNSGIFKPGQLAQDLRVLNDT 401
Query: 50 LNEFKVLNIDPYEYDYIRAITLFKT 74
L FK + +DP E+ ++AI LF++
Sbjct: 402 LCRFKSVMVDPAEFACMKAIVLFRS 426
>gi|156536461|gb|ABU80385.1| tailless, partial [Drosophila littoralis]
Length = 389
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 71/134 (52%), Gaps = 14/134 (10%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD------IEEEVIRFQSVLNEFKV 139
LLL ESW+E FIL +AQYL ++ +L+ +S + + + EV FQ VLN+
Sbjct: 254 LLLEESWKEFFILAMAQYLMPMNFAQLLFVYESENANREIVTIVAREVHAFQDVLNQLCH 313
Query: 140 LNIDPYEYDYIRAITLF-KTVIEDEVKDNRSSSSSDDGSEHPESC-------LRDVIAIA 191
LNID EY+ +RAI+LF K+ ++ ++SS GS P S L + +A
Sbjct: 314 LNIDSTEYECLRAISLFRKSPPAASSTEDLANSSILTGSGSPNSSASAESRGLLESSKVA 373
Query: 192 AIQGHTQIFLNKYI 205
A+ + L+ YI
Sbjct: 374 AMHNDARNALHNYI 387
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 58/99 (58%), Gaps = 9/99 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD------IEEEVIRFQSVLNEFKV 55
LLL ESW+E FIL +AQYL ++ +L+ +S + + + EV FQ VLN+
Sbjct: 254 LLLEESWKEFFILAMAQYLMPMNFAQLLFVYESENANREIVTIVAREVHAFQDVLNQLCH 313
Query: 56 LNIDPYEYDYIRAITLFK---TAFTSRRELAGHLLLAES 91
LNID EY+ +RAI+LF+ A +S +LA +L S
Sbjct: 314 LNIDSTEYECLRAISLFRKSPPAASSTEDLANSSILTGS 352
>gi|350591453|ref|XP_003132435.3| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Sus scrofa]
Length = 596
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 79/198 (39%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 406 AFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRI 465
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N L+ID YEY Y++AI LF +HP
Sbjct: 466 KQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFS-------------------PDHP 506
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ Y R +I + LP L+ + S + EELFF
Sbjct: 507 G--LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFT 564
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N +I I ++ K
Sbjct: 565 GLIG-NVSIDSIIPYILK 581
Score = 43.5 bits (101), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 418 LVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE 477
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L+ID YEY Y++AI LF
Sbjct: 478 FCNSMAKLDIDGYEYAYLKAIVLF 501
>gi|301771740|ref|XP_002921290.1| PREDICTED: nuclear receptor subfamily 2 group C member 2-like
[Ailuropoda melanoleuca]
Length = 611
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 79/198 (39%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 421 AFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRI 480
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N L+ID YEY Y++AI LF +HP
Sbjct: 481 KQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFS-------------------PDHP 521
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ Y R +I + LP L+ + S + EELFF
Sbjct: 522 G--LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFT 579
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N +I I ++ K
Sbjct: 580 GLIG-NVSIDSIIPYILK 596
Score = 43.5 bits (101), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 433 LVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE 492
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L+ID YEY Y++AI LF
Sbjct: 493 FCNSMAKLDIDGYEYAYLKAIVLF 516
>gi|156536463|gb|ABU80386.1| tailless, partial [Drosophila montana]
Length = 389
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 71/134 (52%), Gaps = 14/134 (10%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD------IEEEVIRFQSVLNEFKV 139
LLL ESW+E FIL +AQYL ++ +L+ +S + + + EV FQ VLN+
Sbjct: 254 LLLEESWKEFFILAMAQYLMPMNFAQLLFVYESENANREIVTIVAREVHAFQDVLNQLCH 313
Query: 140 LNIDPYEYDYIRAITLF-KTVIEDEVKDNRSSSSSDDGSEHPESC-------LRDVIAIA 191
LNID EY+ +RAI+LF K+ ++ ++SS GS P S L + +A
Sbjct: 314 LNIDSTEYECLRAISLFRKSPPAASSTEDLANSSILTGSGSPNSSASAESRGLLESSKVA 373
Query: 192 AIQGHTQIFLNKYI 205
A+ + L+ YI
Sbjct: 374 AMHNDARNALHNYI 387
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 58/99 (58%), Gaps = 9/99 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD------IEEEVIRFQSVLNEFKV 55
LLL ESW+E FIL +AQYL ++ +L+ +S + + + EV FQ VLN+
Sbjct: 254 LLLEESWKEFFILAMAQYLMPMNFAQLLFVYESENANREIVTIVAREVHAFQDVLNQLCH 313
Query: 56 LNIDPYEYDYIRAITLFK---TAFTSRRELAGHLLLAES 91
LNID EY+ +RAI+LF+ A +S +LA +L S
Sbjct: 314 LNIDSTEYECLRAISLFRKSPPAASSTEDLANSSILTGS 352
>gi|57231804|gb|AAW47615.1| tailless [Drosophila virilis]
gi|57231808|gb|AAW47617.1| tailless [Drosophila americana]
gi|57231812|gb|AAW47619.1| tailless [Drosophila americana]
gi|57231814|gb|AAW47620.1| tailless [Drosophila americana]
gi|57231816|gb|AAW47621.1| tailless [Drosophila americana]
gi|57231818|gb|AAW47622.1| tailless [Drosophila americana]
gi|57231820|gb|AAW47623.1| tailless [Drosophila americana]
Length = 389
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 71/134 (52%), Gaps = 14/134 (10%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD------IEEEVIRFQSVLNEFKV 139
LLL ESW+E FIL +AQYL ++ +L+ +S + + + EV FQ VLN+
Sbjct: 254 LLLEESWKEFFILAMAQYLMPMNFAQLLFVYESENANREIVTIVAREVHAFQDVLNQLCH 313
Query: 140 LNIDPYEYDYIRAITLF-KTVIEDEVKDNRSSSSSDDGSEHPESC-------LRDVIAIA 191
LNID EY+ +RAI+LF K+ ++ ++SS GS P S L + +A
Sbjct: 314 LNIDSTEYECLRAISLFRKSPPAASSTEDLANSSILTGSGSPNSSASAESRGLLESSKVA 373
Query: 192 AIQGHTQIFLNKYI 205
A+ + L+ YI
Sbjct: 374 AMHNDARNALHNYI 387
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 58/99 (58%), Gaps = 9/99 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD------IEEEVIRFQSVLNEFKV 55
LLL ESW+E FIL +AQYL ++ +L+ +S + + + EV FQ VLN+
Sbjct: 254 LLLEESWKEFFILAMAQYLMPMNFAQLLFVYESENANREIVTIVAREVHAFQDVLNQLCH 313
Query: 56 LNIDPYEYDYIRAITLFK---TAFTSRRELAGHLLLAES 91
LNID EY+ +RAI+LF+ A +S +LA +L S
Sbjct: 314 LNIDSTEYECLRAISLFRKSPPAASSTEDLANSSILTGS 352
>gi|57231810|gb|AAW47618.1| tailless [Drosophila americana]
Length = 389
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 71/134 (52%), Gaps = 14/134 (10%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD------IEEEVIRFQSVLNEFKV 139
LLL ESW+E FIL +AQYL ++ +L+ +S + + + EV FQ VLN+
Sbjct: 254 LLLEESWKEFFILAMAQYLMPMNFAQLLFVYESENANREIVTIVAREVHAFQDVLNQLCH 313
Query: 140 LNIDPYEYDYIRAITLF-KTVIEDEVKDNRSSSSSDDGSEHPESC-------LRDVIAIA 191
LNID EY+ +RAI+LF K+ ++ ++SS GS P S L + +A
Sbjct: 314 LNIDSTEYECLRAISLFRKSPPAASSTEDLANSSILTGSGSPNSSASADSRGLLESSKVA 373
Query: 192 AIQGHTQIFLNKYI 205
A+ + L+ YI
Sbjct: 374 AMHNDARNALHNYI 387
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 66/125 (52%), Gaps = 16/125 (12%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD------IEEEVIRFQSVLNEFKV 55
LLL ESW+E FIL +AQYL ++ +L+ +S + + + EV FQ VLN+
Sbjct: 254 LLLEESWKEFFILAMAQYLMPMNFAQLLFVYESENANREIVTIVAREVHAFQDVLNQLCH 313
Query: 56 LNIDPYEYDYIRAITLFK---TAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGEL 112
LNID EY+ +RAI+LF+ A +S +LA +L S G S D L
Sbjct: 314 LNIDSTEYECLRAISLFRKSPPAASSTEDLANSSILTGS-------GSPNSSASADSRGL 366
Query: 113 VESCK 117
+ES K
Sbjct: 367 LESSK 371
>gi|36950991|ref|NP_003289.2| nuclear receptor subfamily 2 group C member 2 [Homo sapiens]
gi|296225932|ref|XP_002758706.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Callithrix jacchus]
gi|119584617|gb|EAW64213.1| nuclear receptor subfamily 2, group C, member 2, isoform CRA_a
[Homo sapiens]
gi|119584618|gb|EAW64214.1| nuclear receptor subfamily 2, group C, member 2, isoform CRA_a
[Homo sapiens]
gi|168278006|dbj|BAG10981.1| orphan nuclear receptor TR4 [synthetic construct]
gi|325588346|gb|ADZ31973.1| testicular nuclear receptor 4 [Homo sapiens]
gi|355564520|gb|EHH21020.1| hypothetical protein EGK_03993 [Macaca mulatta]
gi|380816092|gb|AFE79920.1| nuclear receptor subfamily 2 group C member 2 [Macaca mulatta]
gi|383421225|gb|AFH33826.1| nuclear receptor subfamily 2 group C member 2 [Macaca mulatta]
Length = 615
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 79/198 (39%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 425 AFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRI 484
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N L+ID YEY Y++AI LF +HP
Sbjct: 485 KQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFS-------------------PDHP 525
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ Y R +I + LP L+ + S + EELFF
Sbjct: 526 G--LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFT 583
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N +I I ++ K
Sbjct: 584 GLIG-NVSIDSIIPYILK 600
Score = 43.5 bits (101), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 437 LVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE 496
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L+ID YEY Y++AI LF
Sbjct: 497 FCNSMAKLDIDGYEYAYLKAIVLF 520
>gi|149728246|ref|XP_001491100.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Equus caballus]
Length = 611
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 79/198 (39%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 421 AFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRI 480
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N L+ID YEY Y++AI LF +HP
Sbjct: 481 KQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFS-------------------PDHP 521
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ Y R +I + LP L+ + S + EELFF
Sbjct: 522 G--LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFT 579
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N +I I ++ K
Sbjct: 580 GLIG-NVSIDSIIPYILK 596
Score = 43.5 bits (101), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 433 LVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE 492
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L+ID YEY Y++AI LF
Sbjct: 493 FCNSMAKLDIDGYEYAYLKAIVLF 516
>gi|344275981|ref|XP_003409789.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 [Loxodonta
africana]
Length = 616
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 79/198 (39%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 426 AFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRI 485
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N L+ID YEY Y++AI LF +HP
Sbjct: 486 KQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFS-------------------PDHP 526
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ Y R +I + LP L+ + S + EELFF
Sbjct: 527 G--LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFT 584
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N +I I ++ K
Sbjct: 585 GLIG-NVSIDSIIPYILK 601
Score = 43.5 bits (101), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 438 LVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE 497
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L+ID YEY Y++AI LF
Sbjct: 498 FCNSMAKLDIDGYEYAYLKAIVLF 521
>gi|114585547|ref|XP_001158643.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 6
[Pan troglodytes]
gi|410222744|gb|JAA08591.1| nuclear receptor subfamily 2, group C, member 2 [Pan troglodytes]
gi|410261218|gb|JAA18575.1| nuclear receptor subfamily 2, group C, member 2 [Pan troglodytes]
gi|410287872|gb|JAA22536.1| nuclear receptor subfamily 2, group C, member 2 [Pan troglodytes]
gi|410349801|gb|JAA41504.1| nuclear receptor subfamily 2, group C, member 2 [Pan troglodytes]
Length = 615
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 79/198 (39%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 425 AFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRI 484
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N L+ID YEY Y++AI LF +HP
Sbjct: 485 KQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFS-------------------PDHP 525
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ Y R +I + LP L+ + S + EELFF
Sbjct: 526 G--LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFT 583
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N +I I ++ K
Sbjct: 584 GLIG-NVSIDSIIPYILK 600
Score = 43.5 bits (101), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 437 LVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE 496
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L+ID YEY Y++AI LF
Sbjct: 497 FCNSMAKLDIDGYEYAYLKAIVLF 520
>gi|126336217|ref|XP_001366331.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Monodelphis domestica]
Length = 596
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 79/198 (39%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 406 AFQALGQDCNTSLVRACWNELFTLGLAQCSQVMSLSTILAAIVNHLQNSIQEDKLSGDRI 465
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N L+ID YEY Y++AI LF +HP
Sbjct: 466 KQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFS-------------------PDHP 506
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ Y R +I + LP L+ + S + EELFF
Sbjct: 507 G--LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSSITEELFFT 564
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N +I I ++ K
Sbjct: 565 GLIG-NVSIDSIIPYILK 581
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 418 LVRACWNELFTLGLAQCSQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE 477
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L+ID YEY Y++AI LF
Sbjct: 478 FCNSMAKLDIDGYEYAYLKAIVLF 501
>gi|57231822|gb|AAW47624.1| tailless [Drosophila ezoana]
Length = 389
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 71/134 (52%), Gaps = 14/134 (10%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD------IEEEVIRFQSVLNEFKV 139
LLL ESW+E FIL +AQYL ++ +L+ +S + + + EV FQ VLN+
Sbjct: 254 LLLEESWKEFFILAMAQYLMPMNFAQLLFVYESENANREIVTIVAREVHAFQDVLNQLCH 313
Query: 140 LNIDPYEYDYIRAITLF-KTVIEDEVKDNRSSSSSDDGSEHPESC-------LRDVIAIA 191
LNID EY+ +RAI+LF K+ ++ ++SS GS P S L + +A
Sbjct: 314 LNIDSTEYECLRAISLFRKSPPAASSTEDLANSSILTGSGSPNSSASAESRGLLESSKVA 373
Query: 192 AIQGHTQIFLNKYI 205
A+ + L+ YI
Sbjct: 374 AMHNDARNALHNYI 387
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 58/99 (58%), Gaps = 9/99 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD------IEEEVIRFQSVLNEFKV 55
LLL ESW+E FIL +AQYL ++ +L+ +S + + + EV FQ VLN+
Sbjct: 254 LLLEESWKEFFILAMAQYLMPMNFAQLLFVYESENANREIVTIVAREVHAFQDVLNQLCH 313
Query: 56 LNIDPYEYDYIRAITLFK---TAFTSRRELAGHLLLAES 91
LNID EY+ +RAI+LF+ A +S +LA +L S
Sbjct: 314 LNIDSTEYECLRAISLFRKSPPAASSTEDLANSSILTGS 352
>gi|397511829|ref|XP_003826267.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Pan paniscus]
Length = 648
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 79/198 (39%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 458 AFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRI 517
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N L+ID YEY Y++AI LF +HP
Sbjct: 518 KQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFS-------------------PDHP 558
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ Y R +I + LP L+ + S + EELFF
Sbjct: 559 G--LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFT 616
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N +I I ++ K
Sbjct: 617 GLIG-NVSIDSIIPYILK 633
Score = 43.5 bits (101), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 470 LVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE 529
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L+ID YEY Y++AI LF
Sbjct: 530 FCNSMAKLDIDGYEYAYLKAIVLF 553
>gi|402887043|ref|XP_003906915.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Papio anubis]
gi|403268297|ref|XP_003926214.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Saimiri boliviensis boliviensis]
Length = 648
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 79/198 (39%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 458 AFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRI 517
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N L+ID YEY Y++AI LF +HP
Sbjct: 518 KQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFS-------------------PDHP 558
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ Y R +I + LP L+ + S + EELFF
Sbjct: 559 G--LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFT 616
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N +I I ++ K
Sbjct: 617 GLIG-NVSIDSIIPYILK 633
Score = 43.5 bits (101), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 470 LVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE 529
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L+ID YEY Y++AI LF
Sbjct: 530 FCNSMAKLDIDGYEYAYLKAIVLF 553
>gi|348501001|ref|XP_003438059.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Oreochromis niloticus]
Length = 410
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 85/179 (47%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL SW ELFIL AQ L + L+ + R V ++V FQ +++
Sbjct: 235 LLRLSWSELFILSAAQSALPLHMAPLLAAAGFHSSPMSAERVVSFMDQVRVFQDQVDKLT 294
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L +D EY ++AI LF P++C L D + + ++Q
Sbjct: 295 RLQVDSAEYSCLKAIALFS----------------------PDACGLTDPVHVESLQEKA 332
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q+ L +Y YPSQP RF ++ L LP L+++P+ ++ +LFF +IG T I+ I M
Sbjct: 333 QVALTEYERMQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLIG-KTPIETLIRDM 390
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL SW ELFIL AQ L + L+ + R V ++V FQ +++
Sbjct: 235 LLRLSWSELFILSAAQSALPLHMAPLLAAAGFHSSPMSAERVVSFMDQVRVFQDQVDKLT 294
Query: 55 VLNIDPYEYDYIRAITLF 72
L +D EY ++AI LF
Sbjct: 295 RLQVDSAEYSCLKAIALF 312
>gi|300796794|ref|NP_001178990.1| nuclear receptor subfamily 2 group C member 2 [Bos taurus]
gi|296474669|tpg|DAA16784.1| TPA: nuclear receptor subfamily 2 group C member 2-like [Bos
taurus]
gi|440903574|gb|ELR54213.1| Nuclear receptor subfamily 2 group C member 2 [Bos grunniens mutus]
Length = 611
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 79/198 (39%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 421 AFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRI 480
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N L+ID YEY Y++AI LF +HP
Sbjct: 481 KQVMEHIWKLQEFCNSMARLDIDGYEYAYLKAIVLFS-------------------PDHP 521
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ Y R +I + LP L+ + S + EELFF
Sbjct: 522 G--LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSSITEELFFT 579
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N +I I ++ K
Sbjct: 580 GLIG-NVSIDSIIPYILK 596
Score = 43.5 bits (101), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 433 LVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE 492
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L+ID YEY Y++AI LF
Sbjct: 493 FCNSMARLDIDGYEYAYLKAIVLF 516
>gi|395516672|ref|XP_003762511.1| PREDICTED: nuclear receptor subfamily 2 group C member 2
[Sarcophilus harrisii]
Length = 629
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 79/198 (39%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 439 AFQALGQDCNTSLVRACWNELFTLGLAQCSQVMSLSTILAAIVNHLQNSIQEDKLSGDRI 498
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N L+ID YEY Y++AI LF +HP
Sbjct: 499 KQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFS-------------------PDHP 539
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ Y R +I + LP L+ + S + EELFF
Sbjct: 540 G--LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSSITEELFFT 597
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N +I I ++ K
Sbjct: 598 GLIG-NVSIDSIIPYILK 614
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 451 LVRACWNELFTLGLAQCSQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE 510
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L+ID YEY Y++AI LF
Sbjct: 511 FCNSMAKLDIDGYEYAYLKAIVLF 534
>gi|441665232|ref|XP_003265071.2| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
C member 2 [Nomascus leucogenys]
Length = 648
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 79/198 (39%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 458 AFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRI 517
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N L+ID YEY Y++AI LF +HP
Sbjct: 518 KQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFS-------------------PDHP 558
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ Y R +I + LP L+ + S + EELFF
Sbjct: 559 G--LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFT 616
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N +I I ++ K
Sbjct: 617 GLIG-NVSIDSIIPYILK 633
Score = 43.5 bits (101), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 470 LVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE 529
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L+ID YEY Y++AI LF
Sbjct: 530 FCNSMAKLDIDGYEYAYLKAIVLF 553
>gi|912822|gb|AAB33314.1| type II zinc finger DNA binding transcription factor [Mus sp.]
gi|148666900|gb|EDK99316.1| nuclear receptor subfamily 2, group C, member 2, isoform CRA_a [Mus
musculus]
Length = 629
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 79/198 (39%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 439 AFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRI 498
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N L+ID YEY Y++AI LF +HP
Sbjct: 499 KQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFS-------------------PDHP 539
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ Y R +I + LP L+ + S + EELFF
Sbjct: 540 G--LTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFT 597
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N +I I ++ K
Sbjct: 598 GLIG-NVSIDSIIPYILK 614
Score = 43.5 bits (101), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 451 LVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE 510
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L+ID YEY Y++AI LF
Sbjct: 511 FCNSMAKLDIDGYEYAYLKAIVLF 534
>gi|348502671|ref|XP_003438891.1| PREDICTED: nuclear receptor subfamily 2 group C member 2
[Oreochromis niloticus]
Length = 630
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 80/198 (40%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF++ + A L+ W ELF LGLAQ ++L ++ + R
Sbjct: 440 AFSALGQEANTSLVRACWNELFTLGLAQCAHVMNLSTILAAIINHLQSSIQDDKLSGERV 499
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + +FQ N L D YEY Y++AI LF +HP
Sbjct: 500 KQVMEHIWKFQEFCNSMTRLETDSYEYAYLKAIVLF-------------------SPDHP 540
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
+ I Q + L Y+ YP R +I LP L+ + S + EELFF
Sbjct: 541 G--VDSSGQIEKFQEKALMELQDYVQKTYPDDTYRLTRILTRLPALRLMNSSITEELFFT 598
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N +I I ++ K
Sbjct: 599 GLIG-NVSIDSIIPYILK 615
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ ++L ++ + R + E + +FQ
Sbjct: 452 LVRACWNELFTLGLAQCAHVMNLSTILAAIINHLQSSIQDDKLSGERVKQVMEHIWKFQE 511
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L D YEY Y++AI LF
Sbjct: 512 FCNSMTRLETDSYEYAYLKAIVLF 535
>gi|149036768|gb|EDL91386.1| rCG56527, isoform CRA_a [Rattus norvegicus]
Length = 629
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 79/198 (39%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 439 AFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRI 498
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N L+ID YEY Y++AI LF +HP
Sbjct: 499 KQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFS-------------------PDHP 539
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ Y R +I + LP L+ + S + EELFF
Sbjct: 540 G--LTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFT 597
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N +I I ++ K
Sbjct: 598 GLIG-NVSIDSIIPYILK 614
Score = 43.5 bits (101), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 451 LVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE 510
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L+ID YEY Y++AI LF
Sbjct: 511 FCNSMAKLDIDGYEYAYLKAIVLF 534
>gi|355707885|gb|AES03095.1| nuclear receptor subfamily 2, group C, member 2 [Mustela putorius
furo]
Length = 609
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 79/198 (39%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 419 AFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRI 478
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N L+ID YEY Y++AI LF +HP
Sbjct: 479 KQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFS-------------------PDHP 519
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ Y R +I + LP L+ + S + EELFF
Sbjct: 520 G--LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFT 577
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N +I I ++ K
Sbjct: 578 GLIG-NVSIDSIIPYILK 594
Score = 43.5 bits (101), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 431 LVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE 490
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L+ID YEY Y++AI LF
Sbjct: 491 FCNSMAKLDIDGYEYAYLKAIVLF 514
>gi|307199534|gb|EFN80135.1| Photoreceptor-specific nuclear receptor [Harpegnathos saltator]
Length = 538
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 86/197 (43%), Gaps = 46/197 (23%)
Query: 86 LLLAESWRELFILGLAQYL----------------------PSLDLGELVESCKSRHVDI 123
+LL E+W ELF+L Q+ P G +++ + +
Sbjct: 365 ILLEEAWSELFLLNAVQWCLPLESSPLFSAAELTALTLSPHPHPHSGMHLQTTTGKPSQV 424
Query: 124 EEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES- 182
+V L +K + +DP E+ ++AI LF+ PE+
Sbjct: 425 AADVRHLHDTLQRYKAIMVDPAEFACMKAIVLFR----------------------PETR 462
Query: 183 CLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNI 242
L+D I +Q Q+ L ++ P+ P RF ++ L+LP L+++P+ +E ++F
Sbjct: 463 GLKDSSQIENLQDQAQVMLGQHARAQQPASPARFGRLLLLLPLLRAVPAARVELIYFHRT 522
Query: 243 IGHNTTIKKTIWHMYKN 259
IG NT ++K + MYKN
Sbjct: 523 IG-NTPMEKVLCDMYKN 538
>gi|417411925|gb|JAA52381.1| Putative nuclear receptor subfamily protein 2 group c member 2,
partial [Desmodus rotundus]
Length = 610
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 79/198 (39%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 420 AFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRI 479
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N L+ID YEY Y++AI LF +HP
Sbjct: 480 KQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFS-------------------PDHP 520
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ Y R +I + LP L+ + S + EELFF
Sbjct: 521 G--LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFT 578
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N +I I ++ K
Sbjct: 579 GLIG-NVSIDSIIPYILK 595
Score = 43.5 bits (101), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 432 LVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE 491
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L+ID YEY Y++AI LF
Sbjct: 492 FCNSMAKLDIDGYEYAYLKAIVLF 515
>gi|345325512|ref|XP_001506145.2| PREDICTED: nuclear receptor subfamily 2 group F member 1-B-like
[Ornithorhynchus anatinus]
Length = 342
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 84/179 (46%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL SW ELF+L AQ L + L+ + R V +++ FQ + +
Sbjct: 172 LLRLSWSELFVLNAAQSALPLHMAPLLAAAGFHASPMSADRVVSFMDQIRVFQDQVEKLS 231
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L +D EY ++AI LF P++C L D + ++Q
Sbjct: 232 RLQVDSAEYSCLKAIALFT----------------------PDACGLSDPAHVESLQEKA 269
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+ I M
Sbjct: 270 QVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIETLIRDM 327
Score = 37.4 bits (85), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL SW ELF+L AQ L + L+ + R V +++ FQ + +
Sbjct: 172 LLRLSWSELFVLNAAQSALPLHMAPLLAAAGFHASPMSADRVVSFMDQIRVFQDQVEKLS 231
Query: 55 VLNIDPYEYDYIRAITLF 72
L +D EY ++AI LF
Sbjct: 232 RLQVDSAEYSCLKAIALF 249
>gi|410924582|ref|XP_003975760.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Takifugu rubripes]
Length = 404
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 85/179 (47%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCK--------SRHVDIEEEVIRFQSVLNEFK 138
LL SW ELFIL AQ L + L+ + R V ++V FQ +++
Sbjct: 234 LLRLSWSELFILNAAQSALPLHMAPLLAAAGFHSSPMSAERVVSFMDQVRVFQDQVDKLT 293
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L +D EY ++AI LF P++C L D + + ++Q
Sbjct: 294 RLQVDSAEYSCLKAIALFS----------------------PDACGLTDPVHVESLQEKA 331
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q+ L +Y YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+ I M
Sbjct: 332 QVALTEYERMQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIETLIRDM 389
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESCK--------SRHVDIEEEVIRFQSVLNEFK 54
LL SW ELFIL AQ L + L+ + R V ++V FQ +++
Sbjct: 234 LLRLSWSELFILNAAQSALPLHMAPLLAAAGFHSSPMSAERVVSFMDQVRVFQDQVDKLT 293
Query: 55 VLNIDPYEYDYIRAITLF 72
L +D EY ++AI LF
Sbjct: 294 RLQVDSAEYSCLKAIALF 311
>gi|47217403|emb|CAG00763.1| unnamed protein product [Tetraodon nigroviridis]
Length = 432
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 90/183 (49%), Gaps = 14/183 (7%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL SW ELFIL AQ + + L+ + R V ++V FQ +++
Sbjct: 236 LLRLSWSELFILNAAQSSLPIHMAPLLAAAGFHSSPMSAERVVSFMDQVRVFQDQVDKLN 295
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNR---SSSSSDDGSEHP-ESC-LRDVIAIAAI 193
L +D EY ++AI LF ++ R S ++ G P ++C L D + ++
Sbjct: 296 RLQVDTAEYSCLKAIALFSPGVQSTACTRRLWERSRTTTSGLLSPTDACGLTDPAHVESL 355
Query: 194 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTI 253
Q Q+ L +Y YP QP RF ++ L LP L+++P+ ++ +LFF ++G T I+ I
Sbjct: 356 QEKAQVALTEYERMQYPGQPQRFGRLLLRLPALRAVPANLISQLFFMRLVG-KTPIETLI 414
Query: 254 WHM 256
M
Sbjct: 415 RDM 417
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL SW ELFIL AQ + + L+ + R V ++V FQ +++
Sbjct: 236 LLRLSWSELFILNAAQSSLPIHMAPLLAAAGFHSSPMSAERVVSFMDQVRVFQDQVDKLN 295
Query: 55 VLNIDPYEYDYIRAITLFKTAFTS 78
L +D EY ++AI LF S
Sbjct: 296 RLQVDTAEYSCLKAIALFSPGVQS 319
>gi|126324155|ref|XP_001369925.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Monodelphis domestica]
Length = 732
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCK--------SRHVDIEEEVIRFQSVLNEFK 138
LL SW ELF+L AQ L + L+ + R V +++ FQ +++
Sbjct: 562 LLRLSWSELFVLNAAQSALPLHMAPLLAAAGFHAAPMAADRVVSFMDQIRVFQEQVDKLN 621
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L +D EY ++AI LF P++C L D + ++Q
Sbjct: 622 RLQVDSAEYSCLKAIALFT----------------------PDACGLSDPAHVESLQEKA 659
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+ I M
Sbjct: 660 QVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPAALISQLFFMRLVG-KTPIETLIRDM 717
Score = 37.0 bits (84), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESCK--------SRHVDIEEEVIRFQSVLNEFK 54
LL SW ELF+L AQ L + L+ + R V +++ FQ +++
Sbjct: 562 LLRLSWSELFVLNAAQSALPLHMAPLLAAAGFHAAPMAADRVVSFMDQIRVFQEQVDKLN 621
Query: 55 VLNIDPYEYDYIRAITLF 72
L +D EY ++AI LF
Sbjct: 622 RLQVDSAEYSCLKAIALF 639
>gi|443685615|gb|ELT89169.1| hypothetical protein CAPTEDRAFT_171557 [Capitella teleta]
Length = 437
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 85/181 (46%), Gaps = 29/181 (16%)
Query: 86 LLLAESWRELFILGLAQYL------PSLDLGELVESCKSRHVDIEEEVIR-FQSVLNEFK 138
+LL E+W ELF+L Q+ P L E ++ + + IR Q V F+
Sbjct: 279 ILLEEAWSELFLLCAIQWSMPMESSPLLSTSEHAQNAPNGKATLTLTDIRILQEVFGRFR 338
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
V +DP E+ ++AI LFK D R L+D + +Q Q
Sbjct: 339 VAQVDPAEFACLKAIVLFK-------PDTRG--------------LKDPHQVENLQDQAQ 377
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 258
+ L ++ P+ P RF ++ L+LP L+ PS +E +FFR IG NT ++K + M+K
Sbjct: 378 LMLFQHCRAQRPALPARFGRLLLMLPLLRLAPSSHIENIFFRRTIG-NTPMEKLLCDMFK 436
Query: 259 N 259
+
Sbjct: 437 S 437
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 2 LLLAESWRELFILGLAQYL------PSLDLGELVESCKSRHVDIEEEVIR-FQSVLNEFK 54
+LL E+W ELF+L Q+ P L E ++ + + IR Q V F+
Sbjct: 279 ILLEEAWSELFLLCAIQWSMPMESSPLLSTSEHAQNAPNGKATLTLTDIRILQEVFGRFR 338
Query: 55 VLNIDPYEYDYIRAITLFK 73
V +DP E+ ++AI LFK
Sbjct: 339 VAQVDPAEFACLKAIVLFK 357
>gi|403256261|ref|XP_003920807.1| PREDICTED: COUP transcription factor 1 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 279
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 86/179 (48%), Gaps = 26/179 (14%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 101 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 160
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY + +++L + ++C L D I ++Q +
Sbjct: 161 ALHVDSAEYSCLSSLSLSLPPMAARA----------------DACGLSDAAHIESLQEKS 204
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 205 QCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 262
>gi|432913184|ref|XP_004078947.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Oryzias latipes]
Length = 406
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 85/179 (47%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCK--------SRHVDIEEEVIRFQSVLNEFK 138
LL SW ELFIL AQ L + L+ + R V ++V FQ +++
Sbjct: 236 LLRLSWSELFILNAAQSSLPLHMAPLLAAAGFHSSPMSAERVVSFMDQVRMFQDQVDKLT 295
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L +D EY ++AI LF P++C L D + + ++Q
Sbjct: 296 RLQVDSAEYSCLKAIALFS----------------------PDACGLTDPVHVESLQEKA 333
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q+ L +Y YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+ I M
Sbjct: 334 QVALTEYERMQYPSQPQRFGRLLLRLPALRAVPANLISQLFFMRLVG-KTPIETLIRDM 391
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESCK--------SRHVDIEEEVIRFQSVLNEFK 54
LL SW ELFIL AQ L + L+ + R V ++V FQ +++
Sbjct: 236 LLRLSWSELFILNAAQSSLPLHMAPLLAAAGFHSSPMSAERVVSFMDQVRMFQDQVDKLT 295
Query: 55 VLNIDPYEYDYIRAITLF 72
L +D EY ++AI LF
Sbjct: 296 RLQVDSAEYSCLKAIALF 313
>gi|189237797|ref|XP_973111.2| PREDICTED: similar to PNR-like [Tribolium castaneum]
Length = 426
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 99/237 (41%), Gaps = 51/237 (21%)
Query: 22 SLDLGELVESCKS--RHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTAFTSR 79
+L+L + ESCK R +DI L++ P E Y A L A
Sbjct: 211 NLELPLMTESCKPVLRPLDI--------------PCLSLFPAENVYESAAKLLFLAIKWA 256
Query: 80 RELAGHL---------LLAESWRELFILGLAQYLPSLDLGELVESC---KSRHVDIEEEV 127
+ + L LL ESW ELF+L AQ+ +D LV + SRH +EE+
Sbjct: 257 KSIPSFLQLSYRDQSILLEESWSELFVLTAAQWAFPVDETLLVSNAIAPTSRHAALEEDA 316
Query: 128 IRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDV 187
R + ++ +L +D E+ ++A+ LFK+ L +
Sbjct: 317 RRLREIITRLTLLRVDHTEHACLKALVLFKSECRG---------------------LCEP 355
Query: 188 IAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
+ +Q T + LN+Y + RF K+ L LP ++++ LEEL FR +G
Sbjct: 356 SHVELLQDQTHVMLNEYCNQR--QTKGRFGKLLLTLPAVQAVTRRGLEELIFRQTVG 410
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESC---KSRHVDIEEEVIRFQSVLNEFKVLNI 58
+LL ESW ELF+L AQ+ +D LV + SRH +EE+ R + ++ +L +
Sbjct: 272 ILLEESWSELFVLTAAQWAFPVDETLLVSNAIAPTSRHAALEEDARRLREIITRLTLLRV 331
Query: 59 DPYEYDYIRAITLFKT 74
D E+ ++A+ LFK+
Sbjct: 332 DHTEHACLKALVLFKS 347
>gi|291393486|ref|XP_002713082.1| PREDICTED: nuclear receptor subfamily 2, group C, member 2
[Oryctolagus cuniculus]
Length = 596
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 79/198 (39%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 406 AFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRI 465
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N L+ID YEY Y++AI LF +HP
Sbjct: 466 KQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFS-------------------PDHP 506
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ Y R +I + LP L+ + + + EELFF
Sbjct: 507 G--LSGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSANITEELFFT 564
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N +I I ++ K
Sbjct: 565 GLIG-NVSIDSIIPYILK 581
Score = 43.5 bits (101), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 418 LVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE 477
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L+ID YEY Y++AI LF
Sbjct: 478 FCNSMAKLDIDGYEYAYLKAIVLF 501
>gi|444705543|gb|ELW46965.1| Nuclear receptor subfamily 2 group C member 2 [Tupaia chinensis]
Length = 606
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 79/198 (39%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 416 AFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSMQEDKLSGDRI 475
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N L++D YEY Y++AI LF +HP
Sbjct: 476 KQVMEHIWKLQEFCNSMARLDVDGYEYAYLKAIVLFS-------------------PDHP 516
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ Y R +I + LP L+ + S + EELFF
Sbjct: 517 G--LSSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFT 574
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N +I I ++ K
Sbjct: 575 GLIG-NVSIDSIIPYILK 591
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 428 LVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSMQEDKLSGDRIKQVMEHIWKLQE 487
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L++D YEY Y++AI LF
Sbjct: 488 FCNSMARLDVDGYEYAYLKAIVLF 511
>gi|47224450|emb|CAG08700.1| unnamed protein product [Tetraodon nigroviridis]
Length = 597
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 85/208 (40%), Gaps = 39/208 (18%)
Query: 65 YIRAITLFKTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELV----------- 113
+ R+I F+T ++ L+ W ELF LG+AQ +++G ++
Sbjct: 405 WARSIPAFQTLCGQDNDIN---LMKACWNELFALGMAQCSSIMNVGTILSAIINHLQTSL 461
Query: 114 --ESCKSRHVD-IEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSS 170
E + V + E + R Q N L D YEY Y++AI LF
Sbjct: 462 QEEKLSAERVKLVMEHIWRMQEFCNSMLKLCPDAYEYAYLKAIVLFS------------- 508
Query: 171 SSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIP 230
+HP + + I Q + L Y+ YP R K+ + LP L+ I
Sbjct: 509 ------PDHPG--INNTPQIERFQEKAYMELQDYVSRTYPEDSYRLSKLLVRLPALRLIS 560
Query: 231 SLVLEELFFRNIIGHNTTIKKTIWHMYK 258
+ V EELFF +IG N I I ++ K
Sbjct: 561 AAVTEELFFAGLIG-NVQIDSIIPYILK 587
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELV-------------ESCKSRHVD-IEEEVIRFQS 48
L+ W ELF LG+AQ +++G ++ E + V + E + R Q
Sbjct: 424 LMKACWNELFALGMAQCSSIMNVGTILSAIINHLQTSLQEEKLSAERVKLVMEHIWRMQE 483
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L D YEY Y++AI LF
Sbjct: 484 FCNSMLKLCPDAYEYAYLKAIVLF 507
>gi|348554859|ref|XP_003463242.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 [Cavia
porcellus]
Length = 596
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 78/198 (39%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 406 AFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGERV 465
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N L ID YEY Y++AI LF +HP
Sbjct: 466 KQVMEHIWKLQEFCNSMARLEIDGYEYAYLKAIVLFS-------------------PDHP 506
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ Y R +I + LP L+ + S + EELFF
Sbjct: 507 G--LTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFT 564
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N +I I ++ K
Sbjct: 565 GLIG-NVSIDSIIPYILK 581
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 418 LVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGERVKQVMEHIWKLQE 477
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L ID YEY Y++AI LF
Sbjct: 478 FCNSMARLEIDGYEYAYLKAIVLF 501
>gi|383861940|ref|XP_003706442.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Megachile
rotundata]
Length = 537
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 88/197 (44%), Gaps = 46/197 (23%)
Query: 86 LLLAESWRELFILGLAQYL------PSLDLGEL----------------VESCKSRHVDI 123
+LL E+W ELF+L Q+ P + EL +++ + +
Sbjct: 364 ILLEEAWSELFLLNAVQWCLPLESSPLFNSAELTALTLSPHPHPHPGIHMQTTTGKPSQV 423
Query: 124 EEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES- 182
+V L +K + +DP E+ ++AI LF+ PE+
Sbjct: 424 AADVRHLHDTLQRYKAVMVDPAEFACMKAIVLFR----------------------PETR 461
Query: 183 CLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNI 242
L+D I +Q Q+ L ++ P+ P RF ++ L+LP L+++P+ +E ++F
Sbjct: 462 GLKDSSQIENLQDQAQVMLGQHARAQQPASPARFGRLLLLLPLLRTVPASRVELIYFHRT 521
Query: 243 IGHNTTIKKTIWHMYKN 259
IG NT ++K + MYKN
Sbjct: 522 IG-NTPMEKVLCDMYKN 537
>gi|351695773|gb|EHA98691.1| Nuclear receptor subfamily 2 group C member 2 [Heterocephalus
glaber]
Length = 616
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 78/198 (39%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 426 AFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGERV 485
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N L ID YEY Y++AI LF +HP
Sbjct: 486 KQVMEHIWKLQEFCNSMARLEIDGYEYAYLKAIVLFS-------------------PDHP 526
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ Y R +I + LP L+ + S + EELFF
Sbjct: 527 G--LTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFT 584
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N +I I ++ K
Sbjct: 585 GLIG-NVSIDSIIPYILK 601
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 438 LVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGERVKQVMEHIWKLQE 497
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L ID YEY Y++AI LF
Sbjct: 498 FCNSMARLEIDGYEYAYLKAIVLF 521
>gi|426339581|ref|XP_004033724.1| PREDICTED: nuclear receptor subfamily 2 group C member 2, partial
[Gorilla gorilla gorilla]
Length = 616
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 79/198 (39%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 426 AFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRI 485
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N L+ID YEY Y++AI LF +HP
Sbjct: 486 KQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFS-------------------PDHP 526
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ Y R +I + LP L+ + S + EELFF
Sbjct: 527 G--LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFT 584
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N +I I ++ K
Sbjct: 585 GLIG-NVSIDSIIPYILK 601
Score = 43.5 bits (101), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 438 LVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE 497
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L+ID YEY Y++AI LF
Sbjct: 498 FCNSMAKLDIDGYEYAYLKAIVLF 521
>gi|357435371|gb|AET79962.1| SHP, partial [Gadus morhua]
Length = 186
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 74/173 (42%), Gaps = 35/173 (20%)
Query: 87 LLAESWRELFILGLAQY--------LPSLDLGELVESCKSRHVDIEEE------VIRFQS 132
LL + W LFILGLAQ P+ + + + + VD E E V + +S
Sbjct: 21 LLQKCWAPLFILGLAQEGVRFEVTDTPADSMLKKILMNRQESVDAEREQPTVAGVGKLKS 80
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
L F L++ P EY Y++ +F I PE L + I
Sbjct: 81 CLKRFGGLDLSPKEYAYLKGTLIFNPDI-------------------PE--LNAALFIEG 119
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
+Q Q L + ++P P RF +I L L++IP +L ELFFR +IG
Sbjct: 120 LQQEAQKALEEVGQPLHPDDPGRFARILLSASMLQTIPPTLLTELFFRPLIGQ 172
>gi|391328748|ref|XP_003738846.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
E member 1-like [Metaseiulus occidentalis]
Length = 524
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 86/195 (44%), Gaps = 47/195 (24%)
Query: 87 LLAESWRELFILGLAQYLPSLDL----------------------GELVESCKSRHVDIE 124
LL E W++LF+L ++ + P +DL + V H ++
Sbjct: 347 LLEEPWKDLFLLYMSHWSPGVDLISSLPAKSSRPSSPKSPTGSPERDAVSPAAVHHDELN 406
Query: 125 E-EVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC 183
E+ Q V+ + L+ D E ++AI LF+ PE+
Sbjct: 407 PIEIHYVQDVMRRLRQLSPDDTECSCLKAIVLFR----------------------PETM 444
Query: 184 -LRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNI 242
L D + +Q Q L Y+ YP QPTRF ++ L+LP L+SI ++ +E+LFF+
Sbjct: 445 GLCDTHPVEMLQDQAQCVLGDYVRERYPRQPTRFGRLLLLLPILRSISNVFIEKLFFKGT 504
Query: 243 IGHNTTIKKTIWHMY 257
IG N ++K + MY
Sbjct: 505 IG-NIRVEKILGEMY 518
>gi|74178793|dbj|BAE34041.1| unnamed protein product [Mus musculus]
Length = 596
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 78/198 (39%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 406 AFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRI 465
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N L+ID YEY Y++AI LF +HP
Sbjct: 466 KQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFS-------------------PDHP 506
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ Y R + + LP L+ + S + EELFF
Sbjct: 507 G--LTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARTLVRLPALRLMSSNITEELFFT 564
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N +I I ++ K
Sbjct: 565 GLIG-NVSIDSIIPYILK 581
Score = 43.5 bits (101), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 418 LVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE 477
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L+ID YEY Y++AI LF
Sbjct: 478 FCNSMAKLDIDGYEYAYLKAIVLF 501
>gi|400270861|gb|AFP75253.1| nuclear receptor subfamily 2 group C member 2, partial [Tupaia
belangeri]
Length = 566
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 73/185 (39%), Gaps = 35/185 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 401 AFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSMQEDKLSGDRI 460
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N L++D YEY Y++AI LF +HP
Sbjct: 461 KQVMEHIWKLQEFCNSMARLDVDGYEYAYLKAIVLFS-------------------PDHP 501
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ Y R +I + LP L+ + S + EELFF
Sbjct: 502 G--LSSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFT 559
Query: 241 NIIGH 245
+IG+
Sbjct: 560 GLIGN 564
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 413 LVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSMQEDKLSGDRIKQVMEHIWKLQE 472
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L++D YEY Y++AI LF
Sbjct: 473 FCNSMARLDVDGYEYAYLKAIVLF 496
>gi|328792134|ref|XP_396999.4| PREDICTED: photoreceptor-specific nuclear receptor [Apis mellifera]
gi|380028656|ref|XP_003698008.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Apis
florea]
Length = 538
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 87/197 (44%), Gaps = 46/197 (23%)
Query: 86 LLLAESWRELFILGLAQYL------PSLDLGEL----------------VESCKSRHVDI 123
+LL E+W ELF+L Q+ P + EL +++ + +
Sbjct: 365 ILLEEAWSELFLLNAVQWCLPLESSPLFNSAELTALTLSPHPHPHSGIHMQTTTGKPSQV 424
Query: 124 EEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES- 182
+V L +K + +DP E+ ++AI LF+ PE+
Sbjct: 425 AADVRHLHDTLQRYKAVMVDPAEFACMKAIVLFR----------------------PETR 462
Query: 183 CLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNI 242
L+D I +Q Q+ L ++ P P RF ++ L+LP L+++P+ +E ++F
Sbjct: 463 GLKDSSQIENLQDQAQVMLGQHARAQQPGSPARFGRLLLLLPLLRTVPASRVELIYFHRT 522
Query: 243 IGHNTTIKKTIWHMYKN 259
IG NT ++K + MYKN
Sbjct: 523 IG-NTPMEKVLCDMYKN 538
>gi|432854604|ref|XP_004067983.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Oryzias latipes]
Length = 406
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 84/179 (46%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCK--------SRHVDIEEEVIRFQSVLNEFK 138
LL SW ELFIL AQ L + L+ + R V ++V FQ +++
Sbjct: 236 LLRLSWSELFILNAAQSALPLHMAPLLAAAGFHSSPMSAERVVSFMDQVRVFQDQVDKLN 295
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L +D EY ++AI LF P++C L D + ++Q
Sbjct: 296 RLQVDSAEYSCLKAIALFS----------------------PDACGLTDPAHVESLQEKA 333
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q+ L +Y YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+ I M
Sbjct: 334 QVALTEYERLQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIETLIRDM 391
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESCK--------SRHVDIEEEVIRFQSVLNEFK 54
LL SW ELFIL AQ L + L+ + R V ++V FQ +++
Sbjct: 236 LLRLSWSELFILNAAQSALPLHMAPLLAAAGFHSSPMSAERVVSFMDQVRVFQDQVDKLN 295
Query: 55 VLNIDPYEYDYIRAITLF 72
L +D EY ++AI LF
Sbjct: 296 RLQVDSAEYSCLKAIALF 313
>gi|340709633|ref|XP_003393408.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Bombus
terrestris]
gi|350422440|ref|XP_003493165.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Bombus
impatiens]
Length = 540
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 87/197 (44%), Gaps = 46/197 (23%)
Query: 86 LLLAESWRELFILGLAQYL------PSLDLGEL----------------VESCKSRHVDI 123
+LL E+W ELF+L Q+ P + EL +++ + +
Sbjct: 367 ILLEEAWSELFLLNAVQWCLPLESSPLFNSAELTALTLSPHPHPHSGIHMQTTTGKPSQV 426
Query: 124 EEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES- 182
+V L +K + +DP E+ ++AI LF+ PE+
Sbjct: 427 AADVRHLHDTLQRYKAVMVDPAEFACMKAIVLFR----------------------PETR 464
Query: 183 CLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNI 242
L+D I +Q Q+ L ++ P P RF ++ L+LP L+++P+ +E ++F
Sbjct: 465 GLKDSSQIENLQDQAQVMLGQHARAQQPGSPARFGRLLLLLPLLRTVPASRVELIYFHRT 524
Query: 243 IGHNTTIKKTIWHMYKN 259
IG NT ++K + MYKN
Sbjct: 525 IG-NTPMEKVLCDMYKN 540
>gi|296803356|gb|ADH51741.1| putative tailless protein [Episyrphus balteatus]
Length = 418
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 90/168 (53%), Gaps = 13/168 (7%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD------IEEEVIRFQSVLNEFKVL 140
LL +SW++LFI+G+AQ ++++ +++ + +S + + + E+ F+ V+++F +L
Sbjct: 237 LLEDSWKDLFIIGMAQCSIAMNVEQILHTYESENPNKDIVRIVSSEMQVFRDVIHQFHLL 296
Query: 141 NIDPYEYDYIRAITLFK---TVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+D EY+ +R I LFK VI + + SSSS S + L + + I +
Sbjct: 297 KLDNDEYECLREIMLFKKPANVINHQDHQSSISSSSSSDSHN----LIETVRILQLYEEA 352
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
KYI + + + T+ I + +K++ + +EE+FFR IGH
Sbjct: 353 NCAFPKYIKSAHGTHLTKLGSIMRTVTEMKNVSTFTIEEVFFRQTIGH 400
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 50/77 (64%), Gaps = 6/77 (7%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD------IEEEVIRFQSVLNEFKVL 56
LL +SW++LFI+G+AQ ++++ +++ + +S + + + E+ F+ V+++F +L
Sbjct: 237 LLEDSWKDLFIIGMAQCSIAMNVEQILHTYESENPNKDIVRIVSSEMQVFRDVIHQFHLL 296
Query: 57 NIDPYEYDYIRAITLFK 73
+D EY+ +R I LFK
Sbjct: 297 KLDNDEYECLREIMLFK 313
>gi|3127936|emb|CAA06690.1| nuclear receptor [Tenebrio molitor]
Length = 489
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 78/173 (45%), Gaps = 35/173 (20%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 132
LL W ELF LGLAQ +L L ++ + ++ + + +++ Q
Sbjct: 301 LLRGCWAELFTLGLAQCSQTLSLSTILSALISHLHTLIAQDKMSATKVKQVSDHIVKLQD 360
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
N LN+D +EY Y++AITLF ++ P+ LR +
Sbjct: 361 YANTMNRLNVDEHEYAYLKAITLFS-------------------ADQPDILLRK--HVEK 399
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
+Q + L Y+H +P RF ++ L LP L+ + LVLEELFF +IG
Sbjct: 400 LQEKSFQALKTYVHNSFPDDTDRFPRLLLRLPPLRGLEPLVLEELFFAGLIGQ 452
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
LL W ELF LGLAQ +L L ++ + ++ + + +++ Q
Sbjct: 301 LLRGCWAELFTLGLAQCSQTLSLSTILSALISHLHTLIAQDKMSATKVKQVSDHIVKLQD 360
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N LN+D +EY Y++AITLF
Sbjct: 361 YANTMNRLNVDEHEYAYLKAITLF 384
>gi|8394483|ref|NP_059019.1| nuclear receptor subfamily 2 group C member 2 [Rattus norvegicus]
gi|1730013|sp|P55094.1|NR2C2_RAT RecName: Full=Nuclear receptor subfamily 2 group C member 2;
AltName: Full=Orphan nuclear receptor TR4; AltName:
Full=Testicular receptor 4
gi|538260|gb|AAA21475.1| TR4 orphan receptor [Rattus norvegicus]
Length = 596
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 79/198 (39%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 406 AFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRI 465
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N L+ID +EY Y++AI LF +HP
Sbjct: 466 KQVMEHIWKLQEFCNSMAKLDIDGHEYAYLKAIVLFS-------------------PDHP 506
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ Y R +I + LP L+ + S + EELFF
Sbjct: 507 G--LTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFT 564
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N +I I ++ K
Sbjct: 565 GLIG-NVSIDSIIPYILK 581
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 418 LVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE 477
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L+ID +EY Y++AI LF
Sbjct: 478 FCNSMAKLDIDGHEYAYLKAIVLF 501
>gi|443685606|gb|ELT89160.1| hypothetical protein CAPTEDRAFT_171549 [Capitella teleta]
Length = 428
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 88/184 (47%), Gaps = 32/184 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 258 LLRLAWSELFVLNAAQCAMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLK 317
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF SSD +C L D I ++Q
Sbjct: 318 ALHVDSAEYSCLKAIVLF---------------SSD-------ACGLSDSAHIESLQEKA 355
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q L +Y + YP+QPTRF K+ L LP L+S+ + V+E+LFF ++G T I+ I M
Sbjct: 356 QCALEEYDRSQYPNQPTRFGKLLLRLPSLRSVSAQVIEQLFFVRLVG-KTPIETLIRDML 414
Query: 258 KNAG 261
+ G
Sbjct: 415 LSGG 418
Score = 38.1 bits (87), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 258 LLRLAWSELFVLNAAQCAMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLK 317
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 318 ALHVDSAEYSCLKAIVLFSS 337
>gi|327283177|ref|XP_003226318.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 2-like
[Anolis carolinensis]
Length = 359
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 84/179 (46%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 189 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 248
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L DV + ++Q +
Sbjct: 249 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDVAHVESLQEKS 286
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+ F ++G T I+ I M
Sbjct: 287 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIAVSXFVRLVG-KTPIETLIRDM 344
Score = 37.0 bits (84), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 189 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 248
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 249 ALHVDSAEYSCLKAIVLFTS 268
>gi|44964649|gb|AAS49525.1| nuclear receptor subfamily 2 group F number 1 [Latimeria chalumnae]
Length = 274
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 75/157 (47%), Gaps = 31/157 (19%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 140 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 199
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L DV I ++Q +
Sbjct: 200 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDVAHIESLQEKS 237
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVL 234
Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+
Sbjct: 238 QCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVI 274
Score = 37.4 bits (85), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 140 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 199
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 200 ALHVDSAEYSCLKAIVLFTS 219
>gi|312382715|gb|EFR28076.1| hypothetical protein AND_04416 [Anopheles darlingi]
Length = 542
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 90/207 (43%), Gaps = 42/207 (20%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELV---ESCKSRH-----------------VD-IE 124
+L ESWRELFIL +AQYL ++ G+L+ E H D +
Sbjct: 327 VLFEESWRELFILAVAQYLAPVNFGQLLIAYEYLNGGHHRGATAATPSTQGTTALTDFLL 386
Query: 125 EEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-- 182
+EV FQ +L++ L +D EY Y+RAI L+K+ + E + SS D +
Sbjct: 387 KEVEIFQEILSQLAALRVDANEYVYLRAIALYKSEFDGETSISSVSSDGSDVTNSTGGTG 446
Query: 183 -------------------CLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLIL 223
+ ++ + A++ + L YI P R+ + +L
Sbjct: 447 SSTGSSSTTTTTSTGTGTRSITELGTVRALEEAAREALATYIQQCRPGPTNRYRALLQLL 506
Query: 224 PRLKSIPSLVLEELFFRNIIGHNTTIK 250
P ++++ S +EELFFR IG +K
Sbjct: 507 PLMRNVSSYTIEELFFRRNIGPAPLLK 533
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 50/96 (52%), Gaps = 21/96 (21%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELV---ESCKSRH-----------------VD-IE 40
+L ESWRELFIL +AQYL ++ G+L+ E H D +
Sbjct: 327 VLFEESWRELFILAVAQYLAPVNFGQLLIAYEYLNGGHHRGATAATPSTQGTTALTDFLL 386
Query: 41 EEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTAF 76
+EV FQ +L++ L +D EY Y+RAI L+K+ F
Sbjct: 387 KEVEIFQEILSQLAALRVDANEYVYLRAIALYKSEF 422
>gi|149412644|ref|XP_001506287.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Ornithorhynchus anatinus]
Length = 596
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 77/198 (38%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 406 AFQALGQDCNTSLVRACWNELFTLGLAQCSQVMSLSTILAAIVNHLQNSIQEDKLSGDRI 465
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N L ID YEY Y++AI LF +HP
Sbjct: 466 KQVMEHIWKLQEFCNSMAKLEIDGYEYAYLKAIVLFS-------------------PDHP 506
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ Y R +I + LP L+ + S + EELFF
Sbjct: 507 G--LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSSITEELFFT 564
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N I I ++ K
Sbjct: 565 GLIG-NVPIDSIIPYILK 581
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 418 LVRACWNELFTLGLAQCSQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE 477
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L ID YEY Y++AI LF
Sbjct: 478 FCNSMAKLEIDGYEYAYLKAIVLF 501
>gi|345487763|ref|XP_001606227.2| PREDICTED: photoreceptor-specific nuclear receptor [Nasonia
vitripennis]
Length = 551
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 92/200 (46%), Gaps = 51/200 (25%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESC-------------------------KSRH 120
+LL E+W ELF+L Q+ L+ L + KS
Sbjct: 377 ILLEEAWSELFLLNAVQWCLPLESSPLFSAAELSALTLSPVHPVHPHSGLHLPSPTKSNQ 436
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
V ++ V +L+ +K + +DP E+ ++AI LF+ P
Sbjct: 437 VGVD--VRYLHDMLHRYKSIMVDPAEFACMKAIILFR----------------------P 472
Query: 181 ES-CLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFF 239
E+ L+D+ I +Q Q+ L ++ + +P+ P RF ++ L+LP L+++P+ +E ++F
Sbjct: 473 ETRGLKDLNQIENLQDQAQVMLGQHTRSQHPNNPARFGRLLLLLPLLRNVPATRVELIYF 532
Query: 240 RNIIGHNTTIKKTIWHMYKN 259
IG NT ++K + MYKN
Sbjct: 533 HRTIG-NTPMEKVLCDMYKN 551
>gi|156394045|ref|XP_001636637.1| predicted protein [Nematostella vectensis]
gi|156223742|gb|EDO44574.1| predicted protein [Nematostella vectensis]
Length = 196
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 78/169 (46%), Gaps = 32/169 (18%)
Query: 87 LLAESWRELFILGLAQYLPSLDLG----ELVESCKSRHVDIEEEVIRFQSVLNE--FKV- 139
LL E+W ++FI+ L Q+ ++ ++VE +H+D +V+ LNE FK+
Sbjct: 35 LLRENWSKVFIINLVQWAMPFEIAPIVSDIVEKTPGQHLD---KVLHTMGKLNEVVFKLV 91
Query: 140 -LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
L + E+ ++A+ LF E L D + I A+Q TQ
Sbjct: 92 QLQLSRAEFSLLKALALFNPDTEQ---------------------LADAVQIQAVQNKTQ 130
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNT 247
L +YI YP P RF ++ L L L ++ ++E +FF ++G +
Sbjct: 131 NALEEYIRVHYPQTPNRFGQVLLRLTALGAVECKIIEHVFFNKLLGSTS 179
>gi|410908455|ref|XP_003967706.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-A-like
[Takifugu rubripes]
Length = 601
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 86/208 (41%), Gaps = 39/208 (18%)
Query: 65 YIRAITLFKTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELV----------- 113
+ R+I F+T ++ L+ W ELF LG+AQ +++G ++
Sbjct: 405 WARSIPAFQTLCGQDNDIN---LMKACWNELFALGMAQCSSIMNVGTILSAIINHLQTSL 461
Query: 114 --ESCKSRHVD-IEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSS 170
E + V + E + R Q N L+ D YEY Y++AI LF
Sbjct: 462 QEEKLSAERVKLVMEHIWRMQEFCNSMLKLSPDSYEYAYLKAIVLFS------------- 508
Query: 171 SSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIP 230
+HP + + I Q + L Y+ YP R K+ + LP L+ I
Sbjct: 509 ------PDHPG--IDNTPQIERFQEKAYMELQDYVTRTYPEDCYRLSKLLVRLPALRLIS 560
Query: 231 SLVLEELFFRNIIGHNTTIKKTIWHMYK 258
+ V EELFF +IG N I I ++ K
Sbjct: 561 ANVTEELFFAGLIG-NVQIDSIIPYILK 587
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELV-------------ESCKSRHVD-IEEEVIRFQS 48
L+ W ELF LG+AQ +++G ++ E + V + E + R Q
Sbjct: 424 LMKACWNELFALGMAQCSSIMNVGTILSAIINHLQTSLQEEKLSAERVKLVMEHIWRMQE 483
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L+ D YEY Y++AI LF
Sbjct: 484 FCNSMLKLSPDSYEYAYLKAIVLF 507
>gi|357620179|gb|EHJ72470.1| hypothetical protein KGM_05607 [Danaus plexippus]
Length = 254
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 80/174 (45%), Gaps = 24/174 (13%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLNIDPYE 146
LL E W ELF+L Q+ LD E R ++V++ ++ + +DP E
Sbjct: 104 LLEEGWSELFLLNAVQWCAPLDAAASALFGTEHDTGAGECRRRLRAVVSRYRSVLVDPAE 163
Query: 147 YDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHTQIFLNKYI 205
+ ++AI LFK PE+ L+D + I +Q Q+ L +
Sbjct: 164 FACMKAIVLFK----------------------PETRGLKDPLQIENLQDQAQVMLMTHT 201
Query: 206 HTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKN 259
T + + P RF ++ L+LP L+ + LE+ FF IG T ++K + MYKN
Sbjct: 202 RTAHGTAPARFGRLLLLLPLLRLVTPQQLEKEFFAKTIGE-TPMEKVLADMYKN 254
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLNIDPYE 62
LL E W ELF+L Q+ LD E R ++V++ ++ + +DP E
Sbjct: 104 LLEEGWSELFLLNAVQWCAPLDAAASALFGTEHDTGAGECRRRLRAVVSRYRSVLVDPAE 163
Query: 63 YDYIRAITLFK 73
+ ++AI LFK
Sbjct: 164 FACMKAIVLFK 174
>gi|1144348|gb|AAC18408.1| TR4, partial [Mus musculus]
Length = 608
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 78/198 (39%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 418 AFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRI 477
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N +ID YEY Y++AI LF +HP
Sbjct: 478 KQVMEHIWKLQEFCNSMANWDIDGYEYAYLKAIVLFS-------------------PDHP 518
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ Y R +I + LP L+ + S + EELFF
Sbjct: 519 G--LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFT 576
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N +I I ++ K
Sbjct: 577 GLIG-NVSIDSIIPYILK 593
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 430 LVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE 489
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N +ID YEY Y++AI LF
Sbjct: 490 FCNSMANWDIDGYEYAYLKAIVLF 513
>gi|449281976|gb|EMC88912.1| COUP transcription factor 2 [Columba livia]
Length = 281
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 83/179 (46%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 111 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 170
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDN-RSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
L++ V E + D R SS G L DV + ++Q +
Sbjct: 171 ALHV---------------AVSEKKCPDPIREFSSYACG-------LSDVAHVESLQEKS 208
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 209 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 266
>gi|216409732|dbj|BAH02303.1| nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
Length = 401
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 83/179 (46%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQY-LP-------SLDLGELVESCKSRHVDIEEEVIRFQSVLNEFK 138
LL SW ELF+L AQ LP + R V ++V FQ +++
Sbjct: 231 LLRMSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLG 290
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L +D EY ++AI LF P++C L D + ++Q
Sbjct: 291 RLQVDSAEYGCLKAIALFT----------------------PDACGLSDPAHVESLQEKA 328
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+ I M
Sbjct: 329 QVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIETLIRDM 386
>gi|313233664|emb|CBY09835.1| unnamed protein product [Oikopleura dioica]
Length = 490
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 80/175 (45%), Gaps = 27/175 (15%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC-----KSRHVDIEEEVIRFQSVLNEFKVLN 141
+L W ELF+L AQ L + L+ + + ++ ++V FQ + + K L+
Sbjct: 268 MLKHCWPELFVLNAAQSHMPLHVAPLLAAAGFHNSADKVMNFMDQVRVFQEQVEKLKSLH 327
Query: 142 IDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFL 201
ID E+ ++AI L S D + D + +IQ Q L
Sbjct: 328 IDSAEFTCLKAIVLL----------------SPDAPG-----VSDPAHVESIQEKAQCAL 366
Query: 202 NKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
+Y YP QP+RF ++ L LP ++++ V+E+LFF ++G T I+ I M
Sbjct: 367 EEYTRCQYPGQPSRFGRLLLRLPSVRTVSPHVIEQLFFVRLVG-KTPIETLIRDM 420
>gi|31065|emb|CAA31282.1| unnamed protein product [Homo sapiens]
Length = 403
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 83/179 (46%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQY-LP-------SLDLGELVESCKSRHVDIEEEVIRFQSVLNEFK 138
LL SW ELF+L AQ LP + R V ++V FQ +++
Sbjct: 233 LLRMSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLG 292
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L +D EY ++AI LF P++C L D + ++Q
Sbjct: 293 RLQVDSAEYGCLKAIALFT----------------------PDACGLSDPAHVESLQEKA 330
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+ I M
Sbjct: 331 QVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIETLIRDM 388
>gi|383859045|ref|XP_003705008.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Megachile rotundata]
Length = 442
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 81/182 (44%), Gaps = 28/182 (15%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSR------HVDIEEEVIRFQSVLNEFKV 139
LLL SW +LF+L LAQ+ S D+ L+E + R V I +E+I Q+++ F+
Sbjct: 280 LLLEGSWTQLFLLHLAQWSISWDITGLLEDEQIRGRFSKDEVGINQELIIIQAIVCRFRQ 339
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQI 199
L+ D E ++A+ LF E L ++ +Q Q
Sbjct: 340 LSPDVGECGCMKAVALFTPETEG---------------------LHATESVKMLQDQAQC 378
Query: 200 FLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKN 259
L Y + Y QP R + ++ LKS+ S +E LFF +G I + + +MY+
Sbjct: 379 ILGDYTTSRYLRQPGRSGTLMYLVGYLKSVSSKTVERLFFHETVG-EIPISRLLVNMYQM 437
Query: 260 AG 261
G
Sbjct: 438 EG 439
Score = 43.9 bits (102), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSR------HVDIEEEVIRFQSVLNEFKV 55
LLL SW +LF+L LAQ+ S D+ L+E + R V I +E+I Q+++ F+
Sbjct: 280 LLLEGSWTQLFLLHLAQWSISWDITGLLEDEQIRGRFSKDEVGINQELIIIQAIVCRFRQ 339
Query: 56 LNIDPYEYDYIRAITLF 72
L+ D E ++A+ LF
Sbjct: 340 LSPDVGECGCMKAVALF 356
>gi|348500378|ref|XP_003437750.1| PREDICTED: COUP transcription factor 2-like [Oreochromis niloticus]
Length = 410
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 86/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQY-LPSLDLGELVES-------CKSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ +P L + R V + + FQ + + K
Sbjct: 240 LLRLTWSELFVLNAAQCSMPVHAAPLLAAAGLHASPMSADRVVAFMDHIRVFQEQVEKLK 299
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
VL++D EY I+AI LF T ++C L DV + +Q +
Sbjct: 300 VLHVDSAEYSCIKAIVLFTT----------------------DACGLSDVAHVEGLQEKS 337
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QP RF K+ L LP L+S+ S V+E+LFF ++G T I+ I M
Sbjct: 338 QCALEEYVRSQYPNQPNRFGKLLLRLPSLRSVSSSVIEQLFFVRLVG-KTPIETLIRDM 395
>gi|293349263|ref|XP_002727107.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Rattus
norvegicus]
Length = 397
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 84/181 (46%), Gaps = 28/181 (15%)
Query: 86 LLLAESWRELFILGLAQY------LPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKV 139
+LL E+W ELF+LG Q+ P L E S + R + + + N F
Sbjct: 238 ILLEEAWNELFLLGAIQWSLPLDSCPLLAPPEASSSSQGRLALASGKQTKRCGLTNYFWG 297
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHTQ 198
+ P E E+K S PE+ L+D + A+Q +Q
Sbjct: 298 CGVRPTS--------------ERELKGAHCCCFS------PETRGLKDPDHVEALQDQSQ 337
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 258
+ L+++ +PSQP RF K+ L+LP L+ I + +E LFFR IG NT ++K + M+K
Sbjct: 338 VMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIG-NTPMEKLLCDMFK 396
Query: 259 N 259
N
Sbjct: 397 N 397
>gi|538261|gb|AAA21474.1| TR4 orphan receptor [Homo sapiens]
Length = 615
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 77/198 (38%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + L+ W ELF LGLAQ + L ++ + R
Sbjct: 425 AFQGLGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRI 484
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N +ID YEY Y++AI LF +HP
Sbjct: 485 KQVMEHIWKLQEFCNSMANWDIDGYEYAYLKAIVLFS-------------------PDHP 525
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ Y R +I + LP L+ + S + EELFF
Sbjct: 526 G--LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFT 583
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N +I I ++ K
Sbjct: 584 GLIG-NVSIDSIIPYILK 600
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 437 LVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE 496
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N +ID YEY Y++AI LF
Sbjct: 497 FCNSMANWDIDGYEYAYLKAIVLF 520
>gi|148233922|ref|NP_001080181.1| nuclear receptor subfamily 2, group F, member 6 [Xenopus laevis]
gi|33416678|gb|AAH56043.1| Nr2f6 protein [Xenopus laevis]
Length = 389
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL SW ELF+L AQ L + L+ + R V +++ FQ + +
Sbjct: 219 LLRLSWSELFVLSAAQSALPLHMAPLLAAAGFHSSPMSADRVVSFMDQIRLFQDQVEKLN 278
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L +D EY ++AI LF + ++C L D + ++Q
Sbjct: 279 RLQVDSAEYACLKAIALFTS----------------------DACGLTDPAHVESLQEKA 316
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+ I M
Sbjct: 317 QVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIETLIRDM 374
Score = 37.0 bits (84), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL SW ELF+L AQ L + L+ + R V +++ FQ + +
Sbjct: 219 LLRLSWSELFVLSAAQSALPLHMAPLLAAAGFHSSPMSADRVVSFMDQIRLFQDQVEKLN 278
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L +D EY ++AI LF +
Sbjct: 279 RLQVDSAEYACLKAIALFTS 298
>gi|52345586|ref|NP_001004841.1| nuclear receptor subfamily 2, group F, member 6 [Xenopus (Silurana)
tropicalis]
gi|49250456|gb|AAH74651.1| nuclear receptor subfamily 2, group F, member 6 [Xenopus (Silurana)
tropicalis]
Length = 389
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL SW ELF+L AQ L + L+ + R V +++ FQ + +
Sbjct: 219 LLRLSWSELFVLSAAQSALPLHMAPLLAAAGFHASPMSADRVVSFMDQIRLFQDQVEKLN 278
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L +D EY ++AI LF + ++C L D + ++Q
Sbjct: 279 RLQVDSAEYACLKAIALFTS----------------------DACGLTDPAHVESLQEKA 316
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+ I M
Sbjct: 317 QVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIETLIRDM 374
>gi|387541468|gb|AFJ71361.1| nuclear receptor subfamily 2 group F member 6 [Macaca mulatta]
Length = 404
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 83/179 (46%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQY-LP-------SLDLGELVESCKSRHVDIEEEVIRFQSVLNEFK 138
LL SW ELF+L AQ LP + R V ++V FQ +++
Sbjct: 234 LLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLG 293
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L +D EY ++AI LF P++C L D + ++Q
Sbjct: 294 RLQVDSAEYGCLKAIALFT----------------------PDACGLSDPAHVESLQEKA 331
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+ I M
Sbjct: 332 QVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIETLIRDM 389
>gi|355707900|gb|AES03100.1| nuclear receptor subfamily 2, group F, member 6 [Mustela putorius
furo]
Length = 214
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 83/179 (46%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQY-LP-------SLDLGELVESCKSRHVDIEEEVIRFQSVLNEFK 138
LL SW ELF+L AQ LP + R V ++V FQ +++
Sbjct: 45 LLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLG 104
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L +D EY ++AI LF P++C L D + ++Q
Sbjct: 105 RLQVDSAEYGCLKAIALFT----------------------PDACGLSDPAHVESLQEKA 142
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+ I M
Sbjct: 143 QVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIETLIRDM 200
>gi|295656541|gb|ADG26733.1| COUP transcription factor 1 [Platynereis dumerilii]
Length = 302
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 78/161 (48%), Gaps = 29/161 (18%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL SW ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 160 LLRLSWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLK 219
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
L++D EY ++A+ LF SSD L D I ++Q +Q
Sbjct: 220 ALHVDSAEYSCLKAVVLF---------------SSDACG------LSDTAHIESLQEKSQ 258
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFF 239
L +Y+ + YP+QPTRF K+ L LP L+S+ + V+E+LFF
Sbjct: 259 CALEEYVRSQYPNQPTRFGKLLLRLPSLRSVSAQVIEQLFF 299
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL SW ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 160 LLRLSWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLK 219
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++A+ LF +
Sbjct: 220 ALHVDSAEYSCLKAVVLFSS 239
>gi|431921971|gb|ELK19144.1| Nuclear receptor subfamily 2 group F member 6 [Pteropus alecto]
Length = 481
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 83/179 (46%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQY-LP-------SLDLGELVESCKSRHVDIEEEVIRFQSVLNEFK 138
LL SW ELF+L AQ LP + R V ++V FQ +++
Sbjct: 311 LLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLG 370
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L +D EY ++AI LF P++C L D + ++Q
Sbjct: 371 RLQVDSAEYGCLKAIALFT----------------------PDACGLSDPAHVESLQEKA 408
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+ I M
Sbjct: 409 QVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIETLIRDM 466
>gi|358412829|ref|XP_002704762.2| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Bos
taurus]
gi|359066798|ref|XP_002688591.2| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Bos
taurus]
Length = 412
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 83/179 (46%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQY-LP-------SLDLGELVESCKSRHVDIEEEVIRFQSVLNEFK 138
LL SW ELF+L AQ LP + R V ++V FQ +++
Sbjct: 242 LLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLG 301
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L +D EY ++AI LF P++C L D + ++Q
Sbjct: 302 RLQVDSAEYGCLKAIALFT----------------------PDACGLSDPAHVESLQEKA 339
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+ I M
Sbjct: 340 QVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIETLIRDM 397
>gi|395847866|ref|XP_003796585.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Otolemur
garnettii]
Length = 410
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 83/179 (46%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQY-LP-------SLDLGELVESCKSRHVDIEEEVIRFQSVLNEFK 138
LL SW ELF+L AQ LP + R V ++V FQ +++
Sbjct: 240 LLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLG 299
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L +D EY ++AI LF P++C L D + ++Q
Sbjct: 300 RLQVDSAEYGCLKAIALFT----------------------PDACGLSDPAHVESLQEKA 337
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+ I M
Sbjct: 338 QVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIETLIRDM 395
>gi|296233223|ref|XP_002761927.1| PREDICTED: nuclear receptor subfamily 2 group F member 6
[Callithrix jacchus]
Length = 386
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 83/179 (46%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQY-LP-------SLDLGELVESCKSRHVDIEEEVIRFQSVLNEFK 138
LL SW ELF+L AQ LP + R V ++V FQ +++
Sbjct: 216 LLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLG 275
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L +D EY ++AI LF P++C L D + ++Q
Sbjct: 276 RLQVDSAEYGCLKAIALFT----------------------PDACGLSDPAHVESLQEKA 313
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+ I M
Sbjct: 314 QVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIETLIRDM 371
>gi|44969507|gb|AAS49607.1| nuclear receptor subfamily 2 group F member 1 [Scyliorhinus
canicula]
Length = 273
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 31/157 (19%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 139 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 198
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L D I ++Q +
Sbjct: 199 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDAAHIESLQEKS 236
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVL 234
Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+
Sbjct: 237 QCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVI 273
Score = 37.4 bits (85), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 139 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 198
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 199 ALHVDSAEYSCLKAIVLFTS 218
>gi|311249241|ref|XP_003123537.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Sus
scrofa]
Length = 414
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 83/179 (46%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQY-LP-------SLDLGELVESCKSRHVDIEEEVIRFQSVLNEFK 138
LL SW ELF+L AQ LP + R V ++V FQ +++
Sbjct: 244 LLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLG 303
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L +D EY ++AI LF P++C L D + ++Q
Sbjct: 304 RLQVDSAEYGCLKAIALFT----------------------PDACGLSDPAHVESLQEKA 341
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+ I M
Sbjct: 342 QVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIETLIRDM 399
>gi|20070199|ref|NP_005225.2| nuclear receptor subfamily 2 group F member 6 [Homo sapiens]
gi|23503053|sp|P10588.2|NR2F6_HUMAN RecName: Full=Nuclear receptor subfamily 2 group F member 6;
AltName: Full=V-erbA-related protein 2; Short=EAR-2
gi|119604986|gb|EAW84580.1| nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
gi|127798390|gb|AAH02669.3| Nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
gi|127799092|gb|AAH63018.2| Nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
gi|127799948|gb|AAH84544.2| Nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
gi|189054615|dbj|BAG37465.1| unnamed protein product [Homo sapiens]
gi|208966888|dbj|BAG73458.1| nuclear receptor subfamily 2, group F, member 6 [synthetic
construct]
gi|325495513|gb|ADZ17362.1| nuclear receptor V-erbA-related [Homo sapiens]
Length = 404
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 83/179 (46%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQY-LP-------SLDLGELVESCKSRHVDIEEEVIRFQSVLNEFK 138
LL SW ELF+L AQ LP + R V ++V FQ +++
Sbjct: 234 LLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLG 293
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L +D EY ++AI LF P++C L D + ++Q
Sbjct: 294 RLQVDSAEYGCLKAIALFT----------------------PDACGLSDPAHVESLQEKA 331
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+ I M
Sbjct: 332 QVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIETLIRDM 389
>gi|73986038|ref|XP_852412.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 isoform 1
[Canis lupus familiaris]
Length = 416
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 83/179 (46%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQY-LP-------SLDLGELVESCKSRHVDIEEEVIRFQSVLNEFK 138
LL SW ELF+L AQ LP + R V ++V FQ +++
Sbjct: 246 LLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLG 305
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L +D EY ++AI LF P++C L D + ++Q
Sbjct: 306 RLQVDSAEYGCLKAIALFT----------------------PDACGLSDPAHVESLQEKA 343
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+ I M
Sbjct: 344 QVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIETLIRDM 401
>gi|114675979|ref|XP_001173294.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Pan
troglodytes]
gi|410209646|gb|JAA02042.1| nuclear receptor subfamily 2, group F, member 6 [Pan troglodytes]
gi|410259260|gb|JAA17596.1| nuclear receptor subfamily 2, group F, member 6 [Pan troglodytes]
gi|410296550|gb|JAA26875.1| nuclear receptor subfamily 2, group F, member 6 [Pan troglodytes]
gi|410337621|gb|JAA37757.1| nuclear receptor subfamily 2, group F, member 6 [Pan troglodytes]
Length = 404
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 83/179 (46%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQY-LP-------SLDLGELVESCKSRHVDIEEEVIRFQSVLNEFK 138
LL SW ELF+L AQ LP + R V ++V FQ +++
Sbjct: 234 LLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLG 293
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L +D EY ++AI LF P++C L D + ++Q
Sbjct: 294 RLQVDSAEYGCLKAIALFT----------------------PDACGLSDPAHVESLQEKA 331
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+ I M
Sbjct: 332 QVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIETLIRDM 389
>gi|66472508|ref|NP_001018458.1| nuclear receptor subfamily 2 group C member 1 [Danio rerio]
gi|63102167|gb|AAH95365.1| Nuclear receptor subfamily 2, group C, member 1 [Danio rerio]
Length = 600
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 81/198 (40%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + G L+ W ELF LGLAQ +++ ++ + R
Sbjct: 410 AFQALGSENGITLMKACWNELFALGLAQCSHIMNVETILTAIINHLQTSLDEEKLSPERV 469
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + R Q N ++ D YEY Y++A+ LF S+ DG+
Sbjct: 470 KQVMEHIWRMQEFCNSMSRMSPDAYEYAYLKAVVLFSP-----------DHSAVDGT--- 515
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
+ I Q + L Y+ VYP R K+ + LP L+ + + V EELFF
Sbjct: 516 -------LQIERFQEKAYMELQDYVSKVYPEDTYRLSKLLVRLPALRLMSAAVTEELFFA 568
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N I I ++ K
Sbjct: 569 GLIG-NVQIDSIIPYILK 585
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ +++ ++ + R + E + R Q
Sbjct: 422 LMKACWNELFALGLAQCSHIMNVETILTAIINHLQTSLDEEKLSPERVKQVMEHIWRMQE 481
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N ++ D YEY Y++A+ LF
Sbjct: 482 FCNSMSRMSPDAYEYAYLKAVVLF 505
>gi|443687228|gb|ELT90277.1| hypothetical protein CAPTEDRAFT_177303 [Capitella teleta]
Length = 352
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 76/158 (48%), Gaps = 26/158 (16%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLNIDPYE 146
LL SW +LF+L + + +D+ + S HVD + Q + + + LNID +E
Sbjct: 206 LLERSWSQLFLLAVCVW--PVDITAHI---GSPHVDWNSRK-QVQELTHSLRSLNIDVHE 259
Query: 147 YDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIH 206
++ A+ L K D V ++ S S I A++ ++ L +Y+
Sbjct: 260 LCFMEALVLLK---RDAVDYSQGSPS-----------------IGALRDQAKLSLAQYVS 299
Query: 207 TVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
V P+ PT+FCK+ + LKSI + +E FFR +IG
Sbjct: 300 YVSPNSPTKFCKLLGAMSSLKSISAAEVECFFFRGVIG 337
>gi|296486096|tpg|DAA28209.1| TPA: nuclear receptor subfamily 2, group F, member 6-like [Bos
taurus]
Length = 383
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 83/179 (46%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQY-LP-------SLDLGELVESCKSRHVDIEEEVIRFQSVLNEFK 138
LL SW ELF+L AQ LP + R V ++V FQ +++
Sbjct: 213 LLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLG 272
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L +D EY ++AI LF P++C L D + ++Q
Sbjct: 273 RLQVDSAEYGCLKAIALFT----------------------PDACGLSDPAHVESLQEKA 310
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+ I M
Sbjct: 311 QVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIETLIRDM 368
>gi|194384988|dbj|BAG60906.1| unnamed protein product [Homo sapiens]
Length = 377
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 83/179 (46%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQY-LP-------SLDLGELVESCKSRHVDIEEEVIRFQSVLNEFK 138
LL SW ELF+L AQ LP + R V ++V FQ +++
Sbjct: 207 LLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLG 266
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L +D EY ++AI LF P++C L D + ++Q
Sbjct: 267 RLQVDSAEYGCLKAIALFT----------------------PDACGLSDPAHVESLQEKA 304
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+ I M
Sbjct: 305 QVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIETLIRDM 362
>gi|409758|gb|AAA37532.1| transcription factor [Mus musculus]
Length = 389
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES--------CKSRHVDIEEEVIRFQSVLNEFK 138
LL SW ELF+L AQ ++ L+ + R V ++V FQ +++
Sbjct: 220 LLRLSWSELFVLNAAQAAVAVHTAPLLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLG 279
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L +D EY ++AI LF P++C L D + ++Q
Sbjct: 280 RLQVDAAEYGCLKAIALFT----------------------PDACGLSDPAHVESLQEKA 317
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+ I M
Sbjct: 318 QVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIETLIRDM 375
>gi|432910588|ref|XP_004078428.1| PREDICTED: nuclear receptor subfamily 2 group F member 5-like
[Oryzias latipes]
Length = 404
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL SW ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 219 LLRMSWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSAERVVAFMDHIRVFQEQVEKLK 278
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
L +D EY +++I LF + D + L DV + +IQ +Q
Sbjct: 279 ALQVDTAEYSCLKSIVLFTS---DAMG------------------LSDVAHVESIQEKSQ 317
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L +Y+ YPSQP RF ++ L LP L+ + S V+E+LFF ++G
Sbjct: 318 CALEEYVRNQYPSQPNRFGRLLLRLPSLRIVSSPVIEQLFFVRLVG 363
Score = 37.0 bits (84), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL SW ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 219 LLRMSWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSAERVVAFMDHIRVFQEQVEKLK 278
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L +D EY +++I LF +
Sbjct: 279 ALQVDTAEYSCLKSIVLFTS 298
>gi|112807199|ref|NP_034280.2| nuclear receptor subfamily 2 group F member 6 [Mus musculus]
gi|341941192|sp|P43136.2|NR2F6_MOUSE RecName: Full=Nuclear receptor subfamily 2 group F member 6;
AltName: Full=COUP transcription factor 3;
Short=COUP-TF3; AltName: Full=V-erbA-related protein 2;
Short=EAR-2
gi|14198162|gb|AAH08138.1| Nuclear receptor subfamily 2, group F, member 6 [Mus musculus]
gi|74143003|dbj|BAE42523.1| unnamed protein product [Mus musculus]
gi|74203464|dbj|BAE20887.1| unnamed protein product [Mus musculus]
gi|148696964|gb|EDL28911.1| nuclear receptor subfamily 2, group F, member 6, isoform CRA_b [Mus
musculus]
Length = 390
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 83/179 (46%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQY-LP-------SLDLGELVESCKSRHVDIEEEVIRFQSVLNEFK 138
LL SW ELF+L AQ LP + R V ++V FQ +++
Sbjct: 221 LLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLG 280
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L +D EY ++AI LF P++C L D + ++Q
Sbjct: 281 RLQVDAAEYGCLKAIALFT----------------------PDACGLSDPAHVESLQEKA 318
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+ I M
Sbjct: 319 QVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIETLIRDM 376
>gi|402904691|ref|XP_003915174.1| PREDICTED: Usher syndrome type-1C protein-binding protein 1 [Papio
anubis]
Length = 952
Score = 62.4 bits (150), Expect = 2e-07, Method: Composition-based stats.
Identities = 53/179 (29%), Positives = 84/179 (46%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES--------CKSRHVDIEEEVIRFQSVLNEFK 138
LL SW ELF+L AQ L L+ + R V ++V FQ +++
Sbjct: 782 LLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLG 841
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L +D EY ++AI LF P++C L D + ++Q
Sbjct: 842 RLQVDSAEYGCLKAIALFT----------------------PDACGLSDPAHVESLQEKA 879
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+ I M
Sbjct: 880 QVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIETLIRDM 937
>gi|348511313|ref|XP_003443189.1| PREDICTED: nuclear receptor subfamily 2 group F member 5-like
[Oreochromis niloticus]
Length = 404
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL SW ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 219 LLRMSWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSAERVVAFMDHIRVFQEQVEKLK 278
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
L +D EY +++I LF + D + L DV + +IQ +Q
Sbjct: 279 ALQVDTAEYSCLKSIVLFTS---DAMG------------------LSDVAHVESIQEKSQ 317
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L +Y+ YPSQP RF ++ L LP L+ + S V+E+LFF ++G
Sbjct: 318 CALEEYVRNQYPSQPNRFGRLLLRLPSLRIVSSPVIEQLFFVRLVG 363
Score = 37.0 bits (84), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL SW ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 219 LLRMSWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSAERVVAFMDHIRVFQEQVEKLK 278
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L +D EY +++I LF +
Sbjct: 279 ALQVDTAEYSCLKSIVLFTS 298
>gi|47214501|emb|CAG00925.1| unnamed protein product [Tetraodon nigroviridis]
Length = 383
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL SW ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 217 LLRMSWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSAERVVAFMDHIRVFQEQVEKLK 276
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
L +D EY +++I LF + D + L DV + +IQ +Q
Sbjct: 277 ALQVDTAEYSCLKSIVLFTS---DAMG------------------LSDVAHVESIQEKSQ 315
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L +Y+ YPSQP RF ++ L LP L+ + S V+E+LFF ++G
Sbjct: 316 CALEEYVRNQYPSQPNRFGRLLLRLPSLRIVSSPVIEQLFFVRLVG 361
Score = 36.6 bits (83), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL SW ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 217 LLRMSWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSAERVVAFMDHIRVFQEQVEKLK 276
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L +D EY +++I LF +
Sbjct: 277 ALQVDTAEYSCLKSIVLFTS 296
>gi|332025033|gb|EGI65220.1| Photoreceptor-specific nuclear receptor [Acromyrmex echinatior]
Length = 443
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 82/180 (45%), Gaps = 30/180 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHV------DIEEEVIRFQSVLNEFKV 139
LLL SW +LF+L LAQ+ S D+ L+E + R +E++ Q+++ F+
Sbjct: 281 LLLERSWTQLFLLHLAQWSVSWDITALLEDEQVRSRLPTDDNPTNQELVLIQAIICRFRQ 340
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHTQ 198
L+ D E ++A+ LF PE+ L V I +Q Q
Sbjct: 341 LSPDFGECGCMKAVALFT----------------------PETVGLHAVQPIEILQDQAQ 378
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 258
L Y + YP QP+R ++ +++ L+ + S +E LFF IG I + + MY+
Sbjct: 379 RILVDYTRSRYPQQPSRIGRLMILVGYLRCVSSKTVERLFFHETIG-EIPISRLLVDMYQ 437
Score = 40.4 bits (93), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHV------DIEEEVIRFQSVLNEFKV 55
LLL SW +LF+L LAQ+ S D+ L+E + R +E++ Q+++ F+
Sbjct: 281 LLLERSWTQLFLLHLAQWSVSWDITALLEDEQVRSRLPTDDNPTNQELVLIQAIICRFRQ 340
Query: 56 LNIDPYEYDYIRAITLF 72
L+ D E ++A+ LF
Sbjct: 341 LSPDFGECGCMKAVALF 357
>gi|410904505|ref|XP_003965732.1| PREDICTED: nuclear receptor subfamily 2 group F member 5-like
[Takifugu rubripes]
Length = 404
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL SW ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 219 LLRMSWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSAERVVAFMDHIRVFQEQVEKLK 278
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
L +D EY +++I LF + D + L DV + +IQ +Q
Sbjct: 279 ALQVDTAEYSCLKSIVLFTS---DAMG------------------LSDVAHVESIQEKSQ 317
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L +Y+ YPSQP RF ++ L LP L+ + S V+E+LFF ++G
Sbjct: 318 CALEEYVRNQYPSQPNRFGRLLLRLPSLRIVSSPVIEQLFFVRLVG 363
Score = 37.0 bits (84), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL SW ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 219 LLRMSWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSAERVVAFMDHIRVFQEQVEKLK 278
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L +D EY +++I LF +
Sbjct: 279 ALQVDTAEYSCLKSIVLFTS 298
>gi|16797884|gb|AAL29200.1|AF323687_1 nuclear receptor AmNR7 [Acropora millepora]
Length = 368
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 80/166 (48%), Gaps = 29/166 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL W ELF+L AQ L + L+ S R V + V FQ + +++
Sbjct: 198 LLRLVWSELFVLNAAQCPMPLQVAPLLASAGIHSNHMSPDRMVTFMDNVRIFQEQIEKYR 257
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
L++D E+ ++AI LF +SD S L D I ++Q TQ
Sbjct: 258 NLHVDAAEFACLKAIVLF---------------TSD------ASGLTDPQYIESLQEKTQ 296
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L +Y YP+QPTRF K+ L LP L+SI S ++E+LFF ++G
Sbjct: 297 CALEEYTRNQYPNQPTRFGKLLLRLPSLRSINSSIVEQLFFVRLVG 342
>gi|410929439|ref|XP_003978107.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Takifugu rubripes]
Length = 406
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 84/179 (46%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCK--------SRHVDIEEEVIRFQSVLNEFK 138
LL SW ELFIL AQ + + L+ + R V ++V FQ +++
Sbjct: 236 LLRLSWSELFILNAAQSSLPVHMAPLLAAAGFHSSPMSAERVVSFMDQVRVFQDQVDKLN 295
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L +D EY ++AI LF P++C L D + ++Q
Sbjct: 296 RLQVDTAEYSCLKAIALFS----------------------PDACGLTDPAHVESLQEKA 333
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q+ L +Y YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+ I M
Sbjct: 334 QVALTEYERIQYPSQPQRFGRLLLRLPALRAVPANLISQLFFMRLVG-KTPIETLIRDM 391
Score = 37.0 bits (84), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESCK--------SRHVDIEEEVIRFQSVLNEFK 54
LL SW ELFIL AQ + + L+ + R V ++V FQ +++
Sbjct: 236 LLRLSWSELFILNAAQSSLPVHMAPLLAAAGFHSSPMSAERVVSFMDQVRVFQDQVDKLN 295
Query: 55 VLNIDPYEYDYIRAITLF 72
L +D EY ++AI LF
Sbjct: 296 RLQVDTAEYSCLKAIALF 313
>gi|332253632|ref|XP_003275940.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Nomascus
leucogenys]
Length = 366
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 83/179 (46%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQY-LP-------SLDLGELVESCKSRHVDIEEEVIRFQSVLNEFK 138
LL SW ELF+L AQ LP + R V ++V FQ +++
Sbjct: 196 LLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLG 255
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L +D EY ++AI LF P++C L D + ++Q
Sbjct: 256 RLQVDSAEYGCLKAIALFT----------------------PDACGLSDPAHVESLQEKA 293
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+ I M
Sbjct: 294 QVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIETLIRDM 351
>gi|56090166|ref|NP_991120.1| nuclear receptor subfamily 2, group F, member 6 [Danio rerio]
gi|40807137|gb|AAH65330.1| Nuclear receptor subfamily 2, group F, member 6a [Danio rerio]
Length = 402
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 82/179 (45%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCK--------SRHVDIEEEVIRFQSVLNEFK 138
LL SW ELFIL AQ L + L+ + R V ++V FQ + +
Sbjct: 232 LLRLSWSELFILNAAQSALPLHMAPLLAAAGFHSSPMSAERVVSFMDQVRVFQDQVEKLT 291
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L +D EY ++AI LF P++C L D + ++Q
Sbjct: 292 RLQVDSAEYSCLKAIALFS----------------------PDACGLTDPAHVESLQEKA 329
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q+ L +Y YP QP RF ++ L LP L+++P+ ++ +LFF ++G T I+ I M
Sbjct: 330 QVALTEYERMQYPGQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIETLIRDM 387
Score = 37.4 bits (85), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESCK--------SRHVDIEEEVIRFQSVLNEFK 54
LL SW ELFIL AQ L + L+ + R V ++V FQ + +
Sbjct: 232 LLRLSWSELFILNAAQSALPLHMAPLLAAAGFHSSPMSAERVVSFMDQVRVFQDQVEKLT 291
Query: 55 VLNIDPYEYDYIRAITLF 72
L +D EY ++AI LF
Sbjct: 292 RLQVDSAEYSCLKAIALF 309
>gi|348529246|ref|XP_003452125.1| PREDICTED: nuclear receptor subfamily 0 group B member 2
[Oreochromis niloticus]
gi|24710927|gb|AAN17673.1| orphan nuclear receptor SHP [Oreochromis niloticus]
gi|24710934|gb|AAN17674.1| orphan nuclear receptor SHP [Oreochromis niloticus]
Length = 258
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 35/173 (20%)
Query: 87 LLAESWRELFILGLAQY--------LPSLDLGELVESCKSRHVDIEEE------VIRFQS 132
LL W LFILGLAQ +P+ + + + + ++E E V + S
Sbjct: 93 LLKSCWAPLFILGLAQERVDFEVTDIPTDSMLKKILLNRPESPEVEREQPTMAGVSKLVS 152
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
L +F L++ P EY Y++ T+F + D L+ + +
Sbjct: 153 CLKKFWSLDLSPKEYAYLKGTTIFNPDVPD---------------------LKAALFVEG 191
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
+Q Q L+K + ++P RF +I L L+SI ++ ELFFR +IG
Sbjct: 192 LQQEAQQALSKVVQLLHPGDGDRFARILLTASMLQSITPSLITELFFRPVIGQ 244
>gi|482930|emb|CAA54097.1| EAR2 [Mus musculus]
Length = 390
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 83/179 (46%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQY-LP-------SLDLGELVESCKSRHVDIEEEVIRFQSVLNEFK 138
LL SW ELF+L AQ LP + R V ++V FQ +++
Sbjct: 221 LLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLG 280
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L +D EY ++AI LF P++C L D + ++Q
Sbjct: 281 RLQVDAAEYGCLKAIALFT----------------------PDACGLSDPAHVESLQEKA 318
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+ I M
Sbjct: 319 QVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISKLFFMRLVG-KTPIETLIRDM 376
>gi|34785966|gb|AAH58069.1| Nr0b2a protein [Danio rerio]
Length = 265
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 73/172 (42%), Gaps = 35/172 (20%)
Query: 87 LLAESWRELFILGLAQ----------YLPSLDLGELVESCKSRHVDIEEEVI----RFQS 132
LL W LFILGLAQ PS+ L+ +S D E+ + +S
Sbjct: 100 LLQNCWTPLFILGLAQDRVHFQVDESAAPSMLKRILLSGQESAGADSEQPTLAGVQTLKS 159
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
+N+F L++ P EY Y++ +F + D L+ + +
Sbjct: 160 CINKFWSLDLSPKEYAYLKGTVIFNPDVPD---------------------LKASLFVEG 198
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
+Q Q L + + +YP RF +I L LKSI ++ ELFFR +IG
Sbjct: 199 LQYEAQQALKEVLVPLYPQDGGRFARILLTASTLKSITPSLITELFFRPVIG 250
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQ----------YLPSLDLGELVESCKSRHVDIEEEVI----RFQS 48
LL W LFILGLAQ PS+ L+ +S D E+ + +S
Sbjct: 100 LLQNCWTPLFILGLAQDRVHFQVDESAAPSMLKRILLSGQESAGADSEQPTLAGVQTLKS 159
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
+N+F L++ P EY Y++ +F
Sbjct: 160 CINKFWSLDLSPKEYAYLKGTVIF 183
>gi|344282642|ref|XP_003413082.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Loxodonta
africana]
Length = 408
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 83/179 (46%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQY-LP-------SLDLGELVESCKSRHVDIEEEVIRFQSVLNEFK 138
LL SW ELF+L AQ LP + R V ++V FQ +++
Sbjct: 238 LLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLG 297
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L +D EY ++AI LF P++C L D + ++Q
Sbjct: 298 RLQVDSAEYGCLKAIALFT----------------------PDACGLSDPAHVESLQEKA 335
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q+ L +Y+ YP+QP RF ++ L LP L+++P+ ++ +LFF ++G T I+ I M
Sbjct: 336 QVALTEYVRAQYPAQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIETLIRDM 393
>gi|44964709|gb|AAS49526.1| nuclear receptor subfamily 2 group F number 1 [Protopterus dolloi]
Length = 273
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 74/157 (47%), Gaps = 29/157 (18%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEF 137
+LL +W ELF+L AQ L + L+ + R V + + FQ + +
Sbjct: 138 VLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKL 197
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
K L++D EY ++AI LF +S G L D I ++Q +
Sbjct: 198 KALHLDSAEYSCLKAIVLF--------------TSGACG-------LSDAAHIESLQEKS 236
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVL 234
Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+
Sbjct: 237 QCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVI 273
Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 12/113 (10%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEF 53
+LL +W ELF+L AQ L + L+ + R V + + FQ + +
Sbjct: 138 VLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKL 197
Query: 54 KVLNIDPYEYDYIRAITLFKTAFTSRRELAGHLLLAESWRELFILGLAQYLPS 106
K L++D EY ++AI LF + + A H+ ES +E L +Y+ S
Sbjct: 198 KALHLDSAEYSCLKAIVLFTSGACGLSD-AAHI---ESLQEKSQCALEEYVRS 246
>gi|195329610|ref|XP_002031503.1| GM24010 [Drosophila sechellia]
gi|194120446|gb|EDW42489.1| GM24010 [Drosophila sechellia]
Length = 1085
Score = 61.6 bits (148), Expect = 3e-07, Method: Composition-based stats.
Identities = 33/77 (42%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 181 ESC-LRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFF 239
++C L DV I ++Q +Q L +Y T YP+QPTRF K+ L LP L+++ S V+E+LFF
Sbjct: 748 DACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF 807
Query: 240 RNIIGHNTTIKKTIWHM 256
++G T I+ I M
Sbjct: 808 VRLVG-KTPIETLIRDM 823
Score = 37.4 bits (85), Expect = 7.2, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL W ELF+L +Q L + L+ + R V + + FQ + + K
Sbjct: 380 LLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLK 439
Query: 55 VLNIDPYEYDYIRAITLFKTA 75
L++D EY ++AI LF T
Sbjct: 440 ALHVDSAEYSCLKAIVLFTTG 460
Score = 37.0 bits (84), Expect = 7.6, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL W ELF+L +Q L + L+ + R V + + FQ + + K
Sbjct: 380 LLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLK 439
Query: 139 VLNIDPYEYDYIRAITLFKT 158
L++D EY ++AI LF T
Sbjct: 440 ALHVDSAEYSCLKAIVLFTT 459
>gi|348515163|ref|XP_003445109.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Oreochromis niloticus]
Length = 407
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 83/179 (46%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCK--------SRHVDIEEEVIRFQSVLNEFK 138
LL SW ELFIL AQ L + L+ + R V ++V FQ + +
Sbjct: 237 LLRLSWSELFILNAAQSALPLHMAPLLAAAGFHSSPMSAERVVSFMDQVRVFQDQVEKLN 296
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L +D EY ++AI LF P++C L D + ++Q
Sbjct: 297 RLQVDSAEYSCLKAIALFS----------------------PDACGLTDPAHVESLQEKA 334
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q+ L +Y YP+QP RF ++ L LP L+++P+ ++ +LFF ++G T I+ I M
Sbjct: 335 QVALTEYERLQYPNQPQRFGRLLLRLPALRAVPANLISQLFFMRLVG-KTPIETLIRDM 392
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESCK--------SRHVDIEEEVIRFQSVLNEFK 54
LL SW ELFIL AQ L + L+ + R V ++V FQ + +
Sbjct: 237 LLRLSWSELFILNAAQSALPLHMAPLLAAAGFHSSPMSAERVVSFMDQVRVFQDQVEKLN 296
Query: 55 VLNIDPYEYDYIRAITLF 72
L +D EY ++AI LF
Sbjct: 297 RLQVDSAEYSCLKAIALF 314
>gi|301618212|ref|XP_002938509.1| PREDICTED: nuclear receptor subfamily 2 group F member 5-like
[Xenopus (Silurana) tropicalis]
Length = 398
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 84/178 (47%), Gaps = 30/178 (16%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 228 LLRMTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRVFQEQVEKLK 287
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
L++D EY ++AI LF D V L D+ + +IQ +Q
Sbjct: 288 ALHVDSAEYSCLKAIALF---TPDAVG------------------LSDIGHVESIQEKSQ 326
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L +Y+ YP+QPTRF ++ L LP L+ + + V+E+LFF ++G T I+ I M
Sbjct: 327 CALEEYVRNQYPNQPTRFGRLLLRLPSLRIVSAPVIEQLFFVRLVG-KTPIETLIRDM 383
Score = 38.1 bits (87), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 12/110 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 228 LLRMTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRVFQEQVEKLK 287
Query: 55 VLNIDPYEYDYIRAITLFKTAFTSRRELAGHLLLAESWRELFILGLAQYL 104
L++D EY ++AI LF ++ GH+ ES +E L +Y+
Sbjct: 288 ALHVDSAEYSCLKAIALFTPDAVGLSDI-GHV---ESIQEKSQCALEEYV 333
>gi|371875292|ref|NP_001243120.1| nuclear receptor subfamily 0 group B member 2 [Danio rerio]
Length = 248
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 73/172 (42%), Gaps = 35/172 (20%)
Query: 87 LLAESWRELFILGLAQ----------YLPSLDLGELVESCKSRHVDIEEEVI----RFQS 132
LL W LFILGLAQ PS+ L+ +S D E+ + +S
Sbjct: 83 LLQNCWTPLFILGLAQDRVHFQVDESAAPSMLKRILLSGQESAGADSEQPTLAGVQTLKS 142
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
+N+F L++ P EY Y++ +F + D L+ + +
Sbjct: 143 CINKFWSLDLSPKEYAYLKGTVIFNPDVPD---------------------LKASLFVEG 181
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
+Q Q L + + +YP RF +I L LKSI ++ ELFFR +IG
Sbjct: 182 LQYEAQQALKEVLVPLYPQDGGRFARILLTASTLKSITPSLITELFFRPVIG 233
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQ----------YLPSLDLGELVESCKSRHVDIEEEVI----RFQS 48
LL W LFILGLAQ PS+ L+ +S D E+ + +S
Sbjct: 83 LLQNCWTPLFILGLAQDRVHFQVDESAAPSMLKRILLSGQESAGADSEQPTLAGVQTLKS 142
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
+N+F L++ P EY Y++ +F
Sbjct: 143 CINKFWSLDLSPKEYAYLKGTVIF 166
>gi|348556980|ref|XP_003464298.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Cavia porcellus]
Length = 396
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 83/179 (46%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQY-LP-------SLDLGELVESCKSRHVDIEEEVIRFQSVLNEFK 138
LL SW ELF+L AQ LP + R V ++V FQ +++
Sbjct: 226 LLRLSWSELFVLNAAQAALPLHTASLLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLG 285
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L +D EY ++AI LF P++C L D + ++Q
Sbjct: 286 RLQVDSAEYGCLKAIALFT----------------------PDACGLSDPAHVESLQEKA 323
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q+ L +Y+ YP+QP RF ++ L LP L+++P+ ++ +LFF ++G T I+ I M
Sbjct: 324 QVALTEYVRAQYPTQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIETLIRDM 381
>gi|47086055|ref|NP_998404.1| nuclear receptor subfamily 2, group F, member 6b [Danio rerio]
gi|40807068|gb|AAH65332.1| Nuclear receptor subfamily 2, group F, member 6b [Danio rerio]
Length = 404
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 82/179 (45%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL SW ELFIL AQ L L+ + R V ++V FQ +++
Sbjct: 234 LLRLSWSELFILNAAQSALPLHTAPLLAAAGFHSSPMPADRVVSFMDQVRVFQDQVDKLT 293
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L +D EY ++AI LF P++C L D + ++Q
Sbjct: 294 RLQVDSVEYSCLKAIALFS----------------------PDACGLSDPAHVESLQEKA 331
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q+ L +Y YP QP RF ++ L LP L+++P+ ++ +LFF ++G T I+ I M
Sbjct: 332 QVALTEYERMQYPGQPQRFGRLLLRLPALRAVPANLISQLFFMRLVG-KTPIETLIRDM 389
Score = 37.4 bits (85), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL SW ELFIL AQ L L+ + R V ++V FQ +++
Sbjct: 234 LLRLSWSELFILNAAQSALPLHTAPLLAAAGFHSSPMPADRVVSFMDQVRVFQDQVDKLT 293
Query: 55 VLNIDPYEYDYIRAITLF 72
L +D EY ++AI LF
Sbjct: 294 RLQVDSVEYSCLKAIALF 311
>gi|321454980|gb|EFX66127.1| hypothetical protein DAPPUDRAFT_116667 [Daphnia pulex]
Length = 340
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 83/164 (50%), Gaps = 27/164 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESC----KSRHVDIEEEVIRFQSVLNEFKVLN 141
LLL E+W ELF+L +AQ+ SLD + +C RH + E + V+ +L
Sbjct: 186 LLLEEAWCELFVLTVAQWGLSLDEVNTMRNCPELTSERHELLLEGLRHLHQVVARIHLLR 245
Query: 142 IDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHTQIF 200
+D E+ ++A+ LFK PE+ LRD +AI +Q TQ+
Sbjct: 246 LDHTEFACLKALVLFK----------------------PETLGLRDGLAIEILQDQTQMM 283
Query: 201 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L+ + + PS RF K+ L+LP LK++ S + +LFFR +IG
Sbjct: 284 LHDMVRSHRPSLAGRFGKLLLLLPALKAVQSANVVDLFFRKLIG 327
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESC----KSRHVDIEEEVIRFQSVLNEFKVLN 57
LLL E+W ELF+L +AQ+ SLD + +C RH + E + V+ +L
Sbjct: 186 LLLEEAWCELFVLTVAQWGLSLDEVNTMRNCPELTSERHELLLEGLRHLHQVVARIHLLR 245
Query: 58 IDPYEYDYIRAITLFK 73
+D E+ ++A+ LFK
Sbjct: 246 LDHTEFACLKALVLFK 261
>gi|20589475|ref|NP_571261.1| nuclear receptor subfamily 2 group F member 5 [Danio rerio]
gi|6094378|sp|Q06726.1|NR2F5_DANRE RecName: Full=Nuclear receptor subfamily 2 group F member 5;
AltName: Full=Steroid receptor homolog SVP 46
gi|296421|emb|CAA49781.1| spv 46 [Danio rerio]
gi|190339654|gb|AAI62999.1| Nr2f5 protein [Danio rerio]
gi|190340229|gb|AAI62963.1| Nuclear receptor subfamily 2, group F, member 5 [Danio rerio]
Length = 403
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL SW ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 219 LLRMSWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSAERVVAFMDHIRVFQEQVEKLK 278
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
L +D EY +++I LF + D + L DV + +IQ +Q
Sbjct: 279 ALQVDTAEYSCLKSIVLFTS---DAMG------------------LSDVAHVESIQEKSQ 317
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L +Y+ YP+QP RF ++ L LP L+ + S V+E+LFF ++G
Sbjct: 318 CALEEYVRNQYPNQPNRFGRLLLRLPSLRIVSSPVIEQLFFVRLVG 363
Score = 37.0 bits (84), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL SW ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 219 LLRMSWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSAERVVAFMDHIRVFQEQVEKLK 278
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L +D EY +++I LF +
Sbjct: 279 ALQVDTAEYSCLKSIVLFTS 298
>gi|397504531|ref|XP_003822842.1| PREDICTED: COUP transcription factor 1 [Pan paniscus]
Length = 523
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 82/179 (45%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 351 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 410
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++ A+ L EV D +C L D I ++Q +
Sbjct: 411 ALHVXXXXXXXXGAVLL-------EVSD---------------ACGLSDAAHIESLQEKS 448
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 449 QCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 506
>gi|149471499|ref|XP_001514355.1| PREDICTED: nuclear receptor subfamily 0 group B member 2-like
[Ornithorhynchus anatinus]
Length = 262
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 73/177 (41%), Gaps = 39/177 (22%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKS--------------RHVDIEEEVI--- 128
LLL W LF+LGLAQ + ++ E S R + +
Sbjct: 92 LLLHSCWAPLFLLGLAQDAVTFEVAETPAPALSMLQRILLDGRGRPRREPETARPTLAAA 151
Query: 129 -RFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDV 187
R Q L+ F+ L++ P EY Y++ + LF + LR
Sbjct: 152 QRLQCCLHTFRGLDLGPKEYAYLKGVFLFNPDVPG---------------------LRTS 190
Query: 188 IAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
AI ++Q Q L + + +P RF ++ L+ LKSIP ++ +LFFR +IG
Sbjct: 191 PAIESLQCEAQRALREELLPRHPEDQGRFARVLLVASTLKSIPPALVRDLFFRPVIG 247
>gi|156374224|ref|XP_001629708.1| predicted protein [Nematostella vectensis]
gi|156216714|gb|EDO37645.1| predicted protein [Nematostella vectensis]
Length = 366
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 79/166 (47%), Gaps = 29/166 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL W ELF+L AQ L + L+ + R V + + FQ + + +
Sbjct: 196 LLRLVWSELFVLNAAQCPMPLQVAPLLATAGIHSNHMSPDRMVSFMDNIRIFQEQVEKLR 255
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
L++D E+ ++AI LF +SD S L D I ++Q TQ
Sbjct: 256 NLHVDAAEFACLKAIVLF---------------TSD------ASGLTDPQYIESLQEKTQ 294
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L +Y YP+QPTRF K+ L LP L+SI S V+E+LFF ++G
Sbjct: 295 CALEEYTRNQYPNQPTRFGKLLLRLPSLRSISSSVVEQLFFVRLVG 340
>gi|307203729|gb|EFN82689.1| Photoreceptor-specific nuclear receptor [Harpegnathos saltator]
Length = 547
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 91/201 (45%), Gaps = 34/201 (16%)
Query: 65 YIRAITLFKTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESCKSRHV--- 121
++R + F+T + +L LLL SW +LF+L LAQ+ S D+ L+E + R
Sbjct: 368 WVRCLPPFQT-ISKDDQL---LLLERSWTQLFLLHLAQWSISWDITALLEDEQVRSRLPA 423
Query: 122 ---DIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSE 178
+E++ Q+++ F+ L+ D E ++A+ LF
Sbjct: 424 DDNPTNQELVLIQAIICRFRQLSPDFGECGCMKAVALFT--------------------- 462
Query: 179 HPESC-LRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEEL 237
PE+ L V I +Q Q L Y + YP QP R ++ +++ L+ + S +E L
Sbjct: 463 -PETVGLHAVQPIEILQDQAQRILVDYTRSRYPQQPGRIGRLMILVGYLRCVSSKTVERL 521
Query: 238 FFRNIIGHNTTIKKTIWHMYK 258
FF IG I + + MY+
Sbjct: 522 FFHETIG-EIPISRLLVDMYQ 541
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHV------DIEEEVIRFQSVLNEFKV 55
LLL SW +LF+L LAQ+ S D+ L+E + R +E++ Q+++ F+
Sbjct: 385 LLLERSWTQLFLLHLAQWSISWDITALLEDEQVRSRLPADDNPTNQELVLIQAIICRFRQ 444
Query: 56 LNIDPYEYDYIRAITLF 72
L+ D E ++A+ LF
Sbjct: 445 LSPDFGECGCMKAVALF 461
>gi|432861275|ref|XP_004069587.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-like
[Oryzias latipes]
Length = 610
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 84/208 (40%), Gaps = 39/208 (18%)
Query: 65 YIRAITLFKTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------- 115
+ R+I F+T ++ L+ W ELF LGLAQ +++G ++ +
Sbjct: 414 WARSIPAFQTLAGQDNDIN---LIKACWNELFALGLAQCSNVMNVGTILGAIINHLQTSL 470
Query: 116 -----CKSRHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSS 170
R + E + R Q N L D YEY Y++AI LF
Sbjct: 471 QEEKLSPERGKLVMEHIWRMQEFCNSMTKLAPDAYEYAYLKAIVLFSP------------ 518
Query: 171 SSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIP 230
+HP + D+ I Q L YI YP R K+ L LP L+ I
Sbjct: 519 -------DHPG--IDDIPQIEMFQEKAYTELQDYITRTYPEDSYRLSKLLLRLPALRLIS 569
Query: 231 SLVLEELFFRNIIGHNTTIKKTIWHMYK 258
+ V EELFF +IG N I I ++ K
Sbjct: 570 AAVTEELFFAGLIG-NVQIDSIIPYILK 596
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ +++G ++ + R + E + R Q
Sbjct: 433 LIKACWNELFALGLAQCSNVMNVGTILGAIINHLQTSLQEEKLSPERGKLVMEHIWRMQE 492
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L D YEY Y++AI LF
Sbjct: 493 FCNSMTKLAPDAYEYAYLKAIVLF 516
>gi|189233984|ref|XP_001813130.1| PREDICTED: similar to nuclear receptor [Tribolium castaneum]
gi|270015114|gb|EFA11562.1| hormone receptor in 78-like protein [Tribolium castaneum]
Length = 489
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 79/173 (45%), Gaps = 35/173 (20%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 132
LL W ELF LGLAQ +L L ++ + ++ + + +++ +
Sbjct: 302 LLRGCWAELFTLGLAQCSQTLSLSTILSALISHLHTLIAQDKMSATKVKQVSDHIVKLKD 361
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
+LN+D +EY Y++AITLF ++ P+ L+ +
Sbjct: 362 YATTMNLLNVDEHEYAYLKAITLFS-------------------ADQPDVLLKK--HVEK 400
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
+Q + L Y+H+ +P RF ++ L LP L+ + LVLEELFF +IG
Sbjct: 401 LQEKSFQGLKNYVHSSFPDDVDRFPRLLLRLPPLRGLEPLVLEELFFAGLIGQ 453
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
LL W ELF LGLAQ +L L ++ + ++ + + +++ +
Sbjct: 302 LLRGCWAELFTLGLAQCSQTLSLSTILSALISHLHTLIAQDKMSATKVKQVSDHIVKLKD 361
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
+LN+D +EY Y++AITLF
Sbjct: 362 YATTMNLLNVDEHEYAYLKAITLF 385
>gi|327287768|ref|XP_003228600.1| PREDICTED: COUP transcription factor 2-like, partial [Anolis
carolinensis]
Length = 266
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 83/178 (46%), Gaps = 30/178 (16%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 96 LLRMTWSELFVLNAAQCAMPLHVAPLLAAAGLHASPMPAERVVAFMDHIRVFQEQVEKLK 155
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
L++D EY ++AI LF D V L D+ + +Q +Q
Sbjct: 156 ALHVDSAEYSCLKAIVLFTP---DAVG------------------LTDLCHVENVQEKSQ 194
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L +Y+ YPSQP+RF ++ L LP L+ + + V+E+LFF ++G T I+ I M
Sbjct: 195 CALEEYVRNQYPSQPSRFGRLLLRLPSLRIVSAPVIEQLFFVRLVG-KTPIETLIRDM 251
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 96 LLRMTWSELFVLNAAQCAMPLHVAPLLAAAGLHASPMPAERVVAFMDHIRVFQEQVEKLK 155
Query: 55 VLNIDPYEYDYIRAITLF 72
L++D EY ++AI LF
Sbjct: 156 ALHVDSAEYSCLKAIVLF 173
>gi|157131845|ref|XP_001655964.1| coup transcription factor [Aedes aegypti]
Length = 102
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Query: 180 PESC-LRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELF 238
P++C L DV I ++Q +Q L +Y + YP+QPTRF K+ L LP L+++ S V+E+LF
Sbjct: 11 PDACGLSDVAHIESLQEKSQCALEEYCRSQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLF 70
Query: 239 FRNIIGHNTTIKKTIWHM 256
F ++G T I+ I M
Sbjct: 71 FVRLVG-KTPIETLIRDM 87
>gi|170056905|ref|XP_001864243.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167876530|gb|EDS39913.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 284
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 56/101 (55%), Gaps = 3/101 (2%)
Query: 145 YEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHTQIFLNK 203
+E Y R T+ VK R ++ + ++C L DV I ++Q +Q L +
Sbjct: 49 FETAYSRKNTMPARWCRTRVK--RPAAECSAETFQKDACGLSDVAHIESLQEKSQCALEE 106
Query: 204 YIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
Y + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G
Sbjct: 107 YCRSQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG 147
>gi|224151159|ref|XP_002199588.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Taeniopygia guttata]
Length = 318
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 82/179 (45%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL SW ELF+L AQ L + L+ + R V +++ FQ + +
Sbjct: 148 LLRLSWSELFVLNAAQSALPLHMAPLLAAAGFHASPMSADRVVAFMDQIRVFQEQVEKLN 207
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L +D EY ++AI LF P++C L D + +Q
Sbjct: 208 RLQVDSAEYSCLKAIALFT----------------------PDACGLSDPAHVETLQEKA 245
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q+ L +Y +P+QP RF ++ L LP L+++P+ ++ +LFF ++G T I+ I M
Sbjct: 246 QVALTEYERAQFPAQPQRFGRLLLRLPALRAVPAALISQLFFMRLVG-KTPIETLIRDM 303
>gi|156387775|ref|XP_001634378.1| predicted protein [Nematostella vectensis]
gi|156221460|gb|EDO42315.1| predicted protein [Nematostella vectensis]
Length = 351
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 86/190 (45%), Gaps = 37/190 (19%)
Query: 64 DYIRAITLFKTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDI 123
D+ R +T F S + LL +W +LF+L ++ L + ++ + ++ +
Sbjct: 153 DWARKLTTFNNLMDSDQ----ITLLKMAWTDLFLLEASRSPLQLYVQQMYATINAQTKQL 208
Query: 124 EEEVI--------RFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDD 175
EVI FQ + L +D E+ +++ I LF+ D
Sbjct: 209 SMEVIVKRMEYARLFQEQAERIRNLGMDMTEHFHLKCIVLFRA----------------D 252
Query: 176 GS--EHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLV 233
GS P + +Q +Q L +YI + YPSQPTRF K+ L+L L+ + S V
Sbjct: 253 GSLINQPRQ-------VEVLQDTSQSSLEQYIRSQYPSQPTRFGKLLLMLSSLRKVESTV 305
Query: 234 LEELFFRNII 243
+E+LFF +++
Sbjct: 306 IEQLFFADVL 315
>gi|156119469|ref|NP_001095229.1| nuclear receptor subfamily 2, group F, member 5 [Xenopus laevis]
gi|64643|emb|CAA44806.1| Coup transcription factor [Xenopus laevis]
Length = 397
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 83/178 (46%), Gaps = 30/178 (16%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ R V + + FQ + + K
Sbjct: 227 LLRMTWSELFVLNAAQCSMPLHVAPLLARAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 286
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
L++D EY ++AI LF D V L D+ + +IQ +Q
Sbjct: 287 ALHVDSAEYSCLKAIALF---TPDAVG------------------LSDIGHVESIQEKSQ 325
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L +Y+ YP+QPTRF ++ L LP L+ + + V+E+LFF ++G T I+ I M
Sbjct: 326 CALEEYVRNQYPNQPTRFGRLLLRLPSLRIVSAPVIEQLFFVRLVG-KTPIETLIRDM 382
>gi|156389440|ref|XP_001634999.1| predicted protein [Nematostella vectensis]
gi|156222088|gb|EDO42936.1| predicted protein [Nematostella vectensis]
Length = 364
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 87/187 (46%), Gaps = 34/187 (18%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIE------------EEVIRFQSV 133
+L+ ESW ELFIL L+Q+ ++DL LV + + + + ++ Q+V
Sbjct: 200 ILIEESWSELFILSLSQWDMAVDLSSLVSAAYPQQMGLSPGHKSDRTPGSMSDIRNLQTV 259
Query: 134 LNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAI 193
++ + ++D EY ++AI LFK I LR + +
Sbjct: 260 VSRLRTASVDQTEYACLKAIVLFKPDIRG---------------------LRLWSHVEQL 298
Query: 194 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTI 253
Q Q L +Y YP Q +RF K+ L LP LKSIP +E LFF + N +++ +
Sbjct: 299 QDQAQCMLGEYELQHYPDQVSRFGKLLLSLPSLKSIPPKAIERLFFSGTL-DNIPMERLL 357
Query: 254 WHMYKNA 260
M+K++
Sbjct: 358 ADMFKSS 364
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 12/84 (14%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIE------------EEVIRFQSV 49
+L+ ESW ELFIL L+Q+ ++DL LV + + + + ++ Q+V
Sbjct: 200 ILIEESWSELFILSLSQWDMAVDLSSLVSAAYPQQMGLSPGHKSDRTPGSMSDIRNLQTV 259
Query: 50 LNEFKVLNIDPYEYDYIRAITLFK 73
++ + ++D EY ++AI LFK
Sbjct: 260 VSRLRTASVDQTEYACLKAIVLFK 283
>gi|28630300|gb|AAN73342.1| nuclear receptor subfamily 2 group F [Petromyzon marinus]
Length = 283
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 66/147 (44%), Gaps = 31/147 (21%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 159 LLRLVWSELFVLNAAQCAMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 218
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY I+AI LF T ++C L D I ++Q +
Sbjct: 219 ALHVDSAEYSCIKAIVLFTT----------------------DACGLSDAAHIESLQEKS 256
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILP 224
Q L +Y+ + YP+QPTRF K+ L LP
Sbjct: 257 QCALEEYVRSQYPNQPTRFGKLLLRLP 283
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 159 LLRLVWSELFVLNAAQCAMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 218
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY I+AI LF T
Sbjct: 219 ALHVDSAEYSCIKAIVLFTT 238
>gi|440893234|gb|ELR46081.1| Nuclear receptor subfamily 2 group F member 6, partial [Bos
grunniens mutus]
Length = 441
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 76/156 (48%), Gaps = 25/156 (16%)
Query: 102 QYLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIE 161
Q P+L G +E R V ++V FQ +++ L +D EY ++AI LF
Sbjct: 295 QMRPALG-GHDLEMAAERAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFT---- 349
Query: 162 DEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQ 220
P++C L D + ++Q Q+ L +Y+ YPSQP RF ++
Sbjct: 350 ------------------PDACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLL 391
Query: 221 LILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L LP L+++P+ ++ +LFF ++G T I+ I M
Sbjct: 392 LRLPALRAVPASLISQLFFMRLVG-KTPIETLIRDM 426
>gi|328496564|gb|AEB21388.1| COUP-TF protein [Hydractinia echinata]
Length = 339
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 83/186 (44%), Gaps = 30/186 (16%)
Query: 64 DYIRAITLFKTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESCK-----S 118
++ + I +F T T+ ++A L+ W+ELF+L L + L L +++ +
Sbjct: 144 EWAKNIPIFPT-LTTGDQIA---LIKLGWKELFVLNLGKCQSPLRLNDVLSNSNLDGLPE 199
Query: 119 RHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSE 178
E V Q+ ++ K L ID EY ++A+ LF + D S
Sbjct: 200 YQATFYEHVKALQTQIDTLKSLQIDAAEYACLKAMILF---------------TPDTPS- 243
Query: 179 HPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELF 238
L + I +Q L Y T YP QP RF K+ L L ++ I ++V+E+LF
Sbjct: 244 -----LNNSAYIHTLQEKAMNALESYTKTKYPLQPARFGKLLLRLSSIRPINTVVIEQLF 298
Query: 239 FRNIIG 244
F ++G
Sbjct: 299 FTWLVG 304
>gi|322787044|gb|EFZ13268.1| hypothetical protein SINV_11756 [Solenopsis invicta]
Length = 288
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 81/180 (45%), Gaps = 30/180 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHV------DIEEEVIRFQSVLNEFKV 139
LLL SW +LF+L LAQ+ S D+ L+E + R +E++ Q+++ F+
Sbjct: 126 LLLERSWTQLFLLHLAQWSISWDITALLEDEQVRSRLPTDDNPTNQELVLIQAIICRFRQ 185
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHTQ 198
L+ D E ++A+ LF PE+ L + I +Q Q
Sbjct: 186 LSPDFGECGCMKAVALFT----------------------PETVGLHAIQPIEILQDQAQ 223
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 258
L Y + YP QP R ++ +++ L+ + S +E LFF IG I + + MY+
Sbjct: 224 RILVDYTRSRYPQQPGRIGRLMILVGYLRCVSSKTVERLFFHETIGE-IPISRLLVDMYQ 282
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHV------DIEEEVIRFQSVLNEFKV 55
LLL SW +LF+L LAQ+ S D+ L+E + R +E++ Q+++ F+
Sbjct: 126 LLLERSWTQLFLLHLAQWSISWDITALLEDEQVRSRLPTDDNPTNQELVLIQAIICRFRQ 185
Query: 56 LNIDPYEYDYIRAITLF 72
L+ D E ++A+ LF
Sbjct: 186 LSPDFGECGCMKAVALF 202
>gi|307168984|gb|EFN61863.1| Photoreceptor-specific nuclear receptor [Camponotus floridanus]
Length = 279
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 84/197 (42%), Gaps = 46/197 (23%)
Query: 86 LLLAESWRELFILGLAQYL------PSLDLGEL----------------VESCKSRHVDI 123
+LL E W ELF+L Q+ P EL +++ + +
Sbjct: 106 ILLEEVWSELFLLNAVQWCLPLESSPLFSAAELTALTLSPHPHPHSGLHLQTTTGKPSQV 165
Query: 124 EEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES- 182
+V L +K + +DP E+ ++AI LF+ PE+
Sbjct: 166 AADVRHLHDTLQRYKAVMVDPAEFACMKAIVLFR----------------------PETR 203
Query: 183 CLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNI 242
L+D I +Q Q+ L + P+ P RF ++ L+LP L+ +P+ +E ++F
Sbjct: 204 GLKDSSQIENLQDQAQLMLGHHARAQQPNSPARFGRLLLLLPLLRMVPASRVELIYFHRT 263
Query: 243 IGHNTTIKKTIWHMYKN 259
IG NT ++K + MYKN
Sbjct: 264 IG-NTPMEKVLCDMYKN 279
>gi|307170858|gb|EFN62969.1| Photoreceptor-specific nuclear receptor [Camponotus floridanus]
Length = 195
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 82/180 (45%), Gaps = 30/180 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELV--ESCKSRHVD----IEEEVIRFQSVLNEFKV 139
LLL SW +LF+L LAQ+ S D+ L+ E +SR +E++ Q+++ F+
Sbjct: 33 LLLERSWTQLFLLHLAQWSISWDITALLDDEQVRSRLPTDDNLTNQELVLIQAIICRFRQ 92
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHTQ 198
L+ D E ++A+ LF PE+ L + I +Q Q
Sbjct: 93 LSPDFGECGCMKAVALFT----------------------PETVGLHAIQPIEILQDQAQ 130
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 258
L Y + YP QP R ++ +++ L+ + S +E LFF IG I + + MY+
Sbjct: 131 RILVDYTRSRYPQQPGRIGRLMILVGYLRCVSSKTVERLFFHETIGE-IPISRLLVDMYQ 189
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELV--ESCKSRHVD----IEEEVIRFQSVLNEFKV 55
LLL SW +LF+L LAQ+ S D+ L+ E +SR +E++ Q+++ F+
Sbjct: 33 LLLERSWTQLFLLHLAQWSISWDITALLDDEQVRSRLPTDDNLTNQELVLIQAIICRFRQ 92
Query: 56 LNIDPYEYDYIRAITLF 72
L+ D E ++A+ LF
Sbjct: 93 LSPDFGECGCMKAVALF 109
>gi|158298860|ref|XP_319009.4| AGAP009890-PA [Anopheles gambiae str. PEST]
gi|157014089|gb|EAA14402.4| AGAP009890-PA [Anopheles gambiae str. PEST]
Length = 526
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 39/186 (20%)
Query: 86 LLLAESWRELFILGLAQYLPSLD-----LGELVESCKS-------RHVDIEEEVIRFQSV 133
+LL ESW ELF+L Q+ +D L L E C S + + +++
Sbjct: 368 ILLEESWAELFLLNAIQWCMPIDTTACTLFSLNEHCNSANNSGFFKPGQLAQDLRILNDT 427
Query: 134 LNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAI 193
L FK + +DP E+ ++AI LF++ L+D + I +
Sbjct: 428 LCRFKSVLVDPAEFACMKAIVLFRSEARG---------------------LKDPVQIENL 466
Query: 194 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTI 253
Q Q + T +P Q RF ++ L+LP L+++ S +E ++F+ IG NT ++K +
Sbjct: 467 QDQAQ-----HSRTQFPGQIARFGRLLLMLPLLRAVNSHKIESIYFQKTIG-NTPMEKVL 520
Query: 254 WHMYKN 259
MYKN
Sbjct: 521 CDMYKN 526
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 12/85 (14%)
Query: 2 LLLAESWRELFILGLAQYLPSLD-----LGELVESCKS-------RHVDIEEEVIRFQSV 49
+LL ESW ELF+L Q+ +D L L E C S + + +++
Sbjct: 368 ILLEESWAELFLLNAIQWCMPIDTTACTLFSLNEHCNSANNSGFFKPGQLAQDLRILNDT 427
Query: 50 LNEFKVLNIDPYEYDYIRAITLFKT 74
L FK + +DP E+ ++AI LF++
Sbjct: 428 LCRFKSVLVDPAEFACMKAIVLFRS 452
>gi|297276426|ref|XP_001114305.2| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
isoform 1 [Macaca mulatta]
Length = 404
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 82/179 (45%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQY-LP-------SLDLGELVESCKSRHVDIEEEVIRFQSVLNEFK 138
LL SW ELF+L AQ LP + R V ++V FQ +++
Sbjct: 234 LLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLG 293
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L +D EY ++AI LF ++C L D + ++Q
Sbjct: 294 RLQVDSAEYGCLKAIALFTQ----------------------DACGLSDPAHVESLQEKA 331
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+ I M
Sbjct: 332 QVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIETLIRDM 389
>gi|242006613|ref|XP_002424143.1| coup transcription factor, putative [Pediculus humanus corporis]
gi|212507468|gb|EEB11405.1| coup transcription factor, putative [Pediculus humanus corporis]
Length = 92
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 184 LRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNII 243
L DV I ++Q +Q L +Y T YP+QPTRF K+ L LP L+++ S V+E+LFF ++
Sbjct: 6 LSDVAHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLV 65
Query: 244 GHNTTIKKTIWHM 256
G T I+ I M
Sbjct: 66 G-KTPIETLIRDM 77
>gi|16797886|gb|AAL29201.1|AF323688_1 nuclear receptor AmNR8 [Acropora millepora]
Length = 379
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 88/198 (44%), Gaps = 42/198 (21%)
Query: 64 DYIRAITLFKTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELV---------- 113
D+ R I F+T TS + +LL SW +LF+LG+AQ S L L+
Sbjct: 189 DWTRNIQAFRTLETSDQ----LVLLQSSWSDLFMLGVAQCSSSFPLSPLLTLAAVHMEHK 244
Query: 114 ---ESCKSRHV----DIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKD 166
E KS + ++ ++++ + +L + L +D E+ ++++I LF
Sbjct: 245 EGNEEQKSNGIMQDSNLLDKMMSIKELLFSLERLEMDLVEFAFLKSIVLF---------- 294
Query: 167 NRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRL 226
N SS L++ + +Q L +Y+ +P+ P RF KI L LP
Sbjct: 295 NPDCSS-----------LKNPQQVERLQEKAHRALKQYVENRHPNTPERFAKILLRLPAT 343
Query: 227 KSIPSLVLEELFFRNIIG 244
+ + EELFF +IG
Sbjct: 344 RMLTKRAAEELFFSPLIG 361
>gi|348513001|ref|XP_003444031.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-like
[Oreochromis niloticus]
Length = 610
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 86/208 (41%), Gaps = 39/208 (18%)
Query: 65 YIRAITLFKTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------- 115
+ R+I F+T ++ L+ W ELF LGLAQ +++G ++ +
Sbjct: 414 WARSIPAFQTLGGQDNDIN---LMKFCWNELFALGLAQCSNVMNVGTILSAIINHLQTSL 470
Query: 116 -----CKSRHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSS 170
R + E + R Q N L+ D YEY Y++AI LF
Sbjct: 471 QEEKLSPERGKIVMEHIWRMQEFCNSMSKLSPDSYEYAYLKAIVLFSP------------ 518
Query: 171 SSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIP 230
+HP + ++ I Q + L Y+ YP R K+ L LP L+ I
Sbjct: 519 -------DHPG--IDNIPQIERFQEKAYMELQDYVTRTYPEDSYRLSKLLLRLPALRLIS 569
Query: 231 SLVLEELFFRNIIGHNTTIKKTIWHMYK 258
+ V EELFF +IG N I I ++ K
Sbjct: 570 AAVTEELFFAGLIG-NVQIDSIIPYILK 596
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ +++G ++ + R + E + R Q
Sbjct: 433 LMKFCWNELFALGLAQCSNVMNVGTILSAIINHLQTSLQEEKLSPERGKIVMEHIWRMQE 492
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L+ D YEY Y++AI LF
Sbjct: 493 FCNSMSKLSPDSYEYAYLKAIVLF 516
>gi|195155260|ref|XP_002018523.1| GL17753 [Drosophila persimilis]
gi|194114319|gb|EDW36362.1| GL17753 [Drosophila persimilis]
Length = 259
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 89/191 (46%), Gaps = 40/191 (20%)
Query: 86 LLLAESWRELFILGLAQYLPSLD-----LGELVESCK-----------SRHVDIEEEVIR 129
+LL ESW ELF+L Q+ LD L + E C + ++ +V
Sbjct: 92 ILLEESWSELFLLNAIQWCIPLDPTGCALFSVAEHCNNLENNANGDTCTTKEELAADVRT 151
Query: 130 FQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVI 188
+ ++K + +DP E+ ++AI LF+ PE+ L+D
Sbjct: 152 LHEIFCKYKAVLVDPAEFACLKAIVLFR----------------------PETRGLKDPA 189
Query: 189 AIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTT 248
I +Q + L+++ T + +Q RF ++ L+LP L+ I S +E ++F+ IG NT
Sbjct: 190 QIENLQDQAHVMLSQHTKTQFTAQIARFGRLLLMLPLLRMISSHKIESIYFQRTIG-NTP 248
Query: 249 IKKTIWHMYKN 259
++K + MYKN
Sbjct: 249 MEKVLCDMYKN 259
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 24/126 (19%)
Query: 2 LLLAESWRELFILGLAQYLPSLD-----LGELVESCK-----------SRHVDIEEEVIR 45
+LL ESW ELF+L Q+ LD L + E C + ++ +V
Sbjct: 92 ILLEESWSELFLLNAIQWCIPLDPTGCALFSVAEHCNNLENNANGDTCTTKEELAADVRT 151
Query: 46 FQSVLNEFKVLNIDPYEYDYIRAITLFKTAFTSRRELA--------GHLLLAESWRELFI 97
+ ++K + +DP E+ ++AI LF+ ++ A H++L++ + F
Sbjct: 152 LHEIFCKYKAVLVDPAEFACLKAIVLFRPETRGLKDPAQIENLQDQAHVMLSQHTKTQFT 211
Query: 98 LGLAQY 103
+A++
Sbjct: 212 AQIARF 217
>gi|302563813|ref|NP_001181753.1| nuclear receptor subfamily 2 group F member 6 [Macaca mulatta]
Length = 377
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 82/179 (45%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQY-LP-------SLDLGELVESCKSRHVDIEEEVIRFQSVLNEFK 138
LL SW ELF+L AQ LP + R V ++V FQ +++
Sbjct: 207 LLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLG 266
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L +D EY ++AI LF ++C L D + ++Q
Sbjct: 267 RLQVDSAEYGCLKAIALFTQ----------------------DACGLSDPAHVESLQEKA 304
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+ I M
Sbjct: 305 QVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIETLIRDM 362
>gi|312174938|emb|CBH51397.1| SHP nuclear receptor subfamily 0, group B, member 2 [Dicentrarchus
labrax]
Length = 259
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 76/173 (43%), Gaps = 32/173 (18%)
Query: 87 LLAESWRELFILGLAQY--------LPSLDLGELVESCKSRHVDIEEE------VIRFQS 132
LL W LFILGLAQ P+ + + + + D+E + V + +S
Sbjct: 91 LLKSCWAPLFILGLAQEHVDFEVMDTPADSMLKKILLNRQESSDMERDQPTMAGVSKLKS 150
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
L +F L++ P EY Y++ T+F N S+ D L+ + +
Sbjct: 151 CLKKFWSLDLSPKEYAYLKGTTIF----------NPHSTDVPD--------LKAALFVEG 192
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
+Q Q L + + ++P RF ++ L L+SI ++ ELFFR +IG
Sbjct: 193 LQQEAQHALREVVQLLHPGDQERFARVLLTASMLQSITPSLISELFFRPVIGQ 245
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 23/114 (20%)
Query: 3 LLAESWRELFILGLAQY--------LPSLDLGELVESCKSRHVDIEEE------VIRFQS 48
LL W LFILGLAQ P+ + + + + D+E + V + +S
Sbjct: 91 LLKSCWAPLFILGLAQEHVDFEVMDTPADSMLKKILLNRQESSDMERDQPTMAGVSKLKS 150
Query: 49 VLNEFKVLNIDPYEYDYIRAITLFKTAFTSRRELAGHLLLAESWRELFILGLAQ 102
L +F L++ P EY Y++ T+F T +L LF+ GL Q
Sbjct: 151 CLKKFWSLDLSPKEYAYLKGTTIFNPHSTDVPDLKA---------ALFVEGLQQ 195
>gi|213512096|ref|NP_001134122.1| nuclear receptor subfamily 0 group B member 2 [Salmo salar]
gi|209730864|gb|ACI66301.1| Nuclear receptor subfamily 0 group B member 2 [Salmo salar]
Length = 256
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 80/173 (46%), Gaps = 35/173 (20%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGE----------LVESCKSRHVDIEEEVI----RFQS 132
LL W LFILGLAQ + D+ + L+ S +S ++ E+ + + +S
Sbjct: 91 LLQSCWVPLFILGLAQEGMNFDIIDTPADSMLKRILLNSQESSEMEREQPTLTGVNKLKS 150
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
L +F L++ P EY Y++ +F +VKD +++ +D + + LR+V+
Sbjct: 151 CLKKFWSLDLSPKEYAYLKGTMIFNP----DVKDLKAAQFVEDLQQEAQHALREVV---- 202
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
++P+ RF I L LK+I ++ ELFFR +IG
Sbjct: 203 -------------QPLHPADLGRFAGILLAASTLKTITPNLITELFFRPVIGQ 242
>gi|195402633|ref|XP_002059909.1| GJ14974 [Drosophila virilis]
gi|194140775|gb|EDW57246.1| GJ14974 [Drosophila virilis]
Length = 577
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 90/192 (46%), Gaps = 41/192 (21%)
Query: 86 LLLAESWRELFILGLAQYLPSLD-----LGELVESCKS---------RHVDIEE---EVI 128
+LL ESW ELF+L Q+ LD L + E C + V EE +V
Sbjct: 409 ILLEESWSELFLLNAIQWCIPLDPTGCALFSVAEHCNNLENNASNGDNCVSKEELAADVR 468
Query: 129 RFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDV 187
+ ++K + +DP E+ ++AI LF+ PE+ L+D
Sbjct: 469 TLHEIFCKYKAVLVDPAEFACLKAIVLFR----------------------PETRGLKDP 506
Query: 188 IAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNT 247
I +Q + L+++ T + +Q RF ++ L+LP L+ I S +E +FF+ IG NT
Sbjct: 507 AQIENLQDQAHVMLSQHTKTQFTAQIARFGRLLLMLPLLRMINSHKIESIFFQRTIG-NT 565
Query: 248 TIKKTIWHMYKN 259
++K + MYKN
Sbjct: 566 PMEKVLCDMYKN 577
Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 25/127 (19%)
Query: 2 LLLAESWRELFILGLAQYLPSLD-----LGELVESCKS---------RHVDIEE---EVI 44
+LL ESW ELF+L Q+ LD L + E C + V EE +V
Sbjct: 409 ILLEESWSELFLLNAIQWCIPLDPTGCALFSVAEHCNNLENNASNGDNCVSKEELAADVR 468
Query: 45 RFQSVLNEFKVLNIDPYEYDYIRAITLFKTAFTSRRELA--------GHLLLAESWRELF 96
+ ++K + +DP E+ ++AI LF+ ++ A H++L++ + F
Sbjct: 469 TLHEIFCKYKAVLVDPAEFACLKAIVLFRPETRGLKDPAQIENLQDQAHVMLSQHTKTQF 528
Query: 97 ILGLAQY 103
+A++
Sbjct: 529 TAQIARF 535
>gi|340712645|ref|XP_003394866.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Bombus terrestris]
Length = 425
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 77/181 (42%), Gaps = 27/181 (14%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSR-----HVDIEEEVIRFQSVLNEFKVL 140
LLL SW +LF+L LAQ+ S ++ L+E + R +++I Q + F+ L
Sbjct: 264 LLLEGSWTQLFLLHLAQWSISWNITGLLEDEQVRARLPDEATTNQQLITIQDTICRFRQL 323
Query: 141 NIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIF 200
+ D E+ ++A+ LF E L +I +Q Q
Sbjct: 324 SPDMSEWGCMKAVALFTPETEG---------------------LHASESIKMLQDQAQCI 362
Query: 201 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 260
L Y + Y QP R + ++ RL SI ++E LFF IG I + + MY+
Sbjct: 363 LGDYTKSRYQRQPGRSGTLMHVVGRLTSIFPKLVERLFFHETIG-EIPISRLLVDMYQMK 421
Query: 261 G 261
G
Sbjct: 422 G 422
Score = 40.0 bits (92), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSR-----HVDIEEEVIRFQSVLNEFKVL 56
LLL SW +LF+L LAQ+ S ++ L+E + R +++I Q + F+ L
Sbjct: 264 LLLEGSWTQLFLLHLAQWSISWNITGLLEDEQVRARLPDEATTNQQLITIQDTICRFRQL 323
Query: 57 NIDPYEYDYIRAITLF 72
+ D E+ ++A+ LF
Sbjct: 324 SPDMSEWGCMKAVALF 339
>gi|307190827|gb|EFN74679.1| Steroid receptor seven-up, isoforms B/C [Camponotus floridanus]
Length = 96
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 181 ESC-LRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFF 239
++C L DV I ++Q +Q L +Y T YP+QPTRF K+ L LP L+++ S V+E+LFF
Sbjct: 5 DACGLSDVAHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF 64
Query: 240 RNIIGHNTTIKKTIWHM 256
++G T I+ I M
Sbjct: 65 VRLVG-KTPIETLIRDM 80
>gi|322800489|gb|EFZ21493.1| hypothetical protein SINV_13619 [Solenopsis invicta]
Length = 90
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 184 LRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNII 243
L DV I ++Q +Q L +Y T YP+QPTRF K+ L LP L+++ S V+E+LFF ++
Sbjct: 4 LSDVAHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLV 63
Query: 244 GHNTTIKKTIWHM 256
G T I+ I M
Sbjct: 64 G-KTPIETLIRDM 75
>gi|83835516|gb|ABC47791.1| nuclear receptor subfamily 2 group F member 2, partial [Phodopus
sungorus]
Length = 100
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 50/77 (64%), Gaps = 2/77 (2%)
Query: 181 ESC-LRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFF 239
++C L DV + ++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF
Sbjct: 10 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 69
Query: 240 RNIIGHNTTIKKTIWHM 256
++G T I+ I M
Sbjct: 70 VRLVG-KTPIETLIRDM 85
>gi|224797875|gb|ACN62901.1| nuclear receptor subfamily 2 group F member 2 [Ovis aries]
Length = 71
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 42/63 (66%)
Query: 184 LRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNII 243
L DV + ++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++
Sbjct: 7 LSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLV 66
Query: 244 GHN 246
G
Sbjct: 67 GKT 69
>gi|410911370|ref|XP_003969163.1| PREDICTED: nuclear receptor subfamily 0 group B member 2-like
[Takifugu rubripes]
Length = 250
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 73/175 (41%), Gaps = 35/175 (20%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESC-------------KSRHVDIEEEVIRFQS 132
LLL W LF+LGLAQ +L++ E +S + H EV R ++
Sbjct: 94 LLLRHCWVHLFVLGLAQQRIALEVTEAPDSSILRQILLGPGLTEQDHHRPTLAEVHRLRT 153
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
++N L + P EY Y++ LF + LR I
Sbjct: 154 IMNHLWTLGLGPKEYAYLKGALLFNPAVPG---------------------LRASTVIRG 192
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNT 247
+Q Q L + +H ++P +RF ++ L ++S+ ++ +L + ++ H+T
Sbjct: 193 LQKEAQGALREVVHLLHPGDASRFSRVLLAASSVQSVSHQLVSQLLLKPVL-HDT 246
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 13/92 (14%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESC-------------KSRHVDIEEEVIRFQS 48
LLL W LF+LGLAQ +L++ E +S + H EV R ++
Sbjct: 94 LLLRHCWVHLFVLGLAQQRIALEVTEAPDSSILRQILLGPGLTEQDHHRPTLAEVHRLRT 153
Query: 49 VLNEFKVLNIDPYEYDYIRAITLFKTAFTSRR 80
++N L + P EY Y++ LF A R
Sbjct: 154 IMNHLWTLGLGPKEYAYLKGALLFNPAVPGLR 185
>gi|68132040|gb|AAY85286.1| TR2, partial [Danio rerio]
Length = 580
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 78/200 (39%), Gaps = 41/200 (20%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLA----------------QYLPSLDLGELVESCKS 118
AF + G L+ W ELF LGL SLD +L
Sbjct: 395 AFQALGSENGITLMKACWNELFALGLXCSHIMNVETILTAIINHLQTSLDEEKLS---PE 451
Query: 119 RHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSE 178
R + E + R Q N ++ D YEY Y++A+ LF S+ DG+
Sbjct: 452 RVKQVMEHIWRMQEFCNSMSRMSPDAYEYAYLKAVVLFSP-----------DHSAVDGT- 499
Query: 179 HPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELF 238
+ I Q + L Y+ VYP R K+ + LP L+ + + V EELF
Sbjct: 500 ---------LQIERFQEKAYMELQDYVSKVYPEDTYRLSKLLVRLPALRLMSAAVTEELF 550
Query: 239 FRNIIGHNTTIKKTIWHMYK 258
F +IG N I I ++ K
Sbjct: 551 FAGLIG-NVQIDSIIPYILK 569
>gi|432875136|ref|XP_004072692.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like,
partial [Oryzias latipes]
Length = 330
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 82/181 (45%), Gaps = 21/181 (11%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 145 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 204
Query: 139 VLNIDPYEYDYIRAITLFKTV---IEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQG 195
L++D EY ++AI LF + + V + S D G P+ L +
Sbjct: 205 TLHVDSAEYSCLKAIVLFTSAMGAVASGVLLSDVDWSRDAGV--PKEMLSCQLPATYPPQ 262
Query: 196 HTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWH 255
T L+ P QP+RF K+ L LP L+++ S V+E+LFF ++G T I+ I
Sbjct: 263 RTPCHLD-------PHQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRD 314
Query: 256 M 256
M
Sbjct: 315 M 315
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 145 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 204
Query: 55 VLNIDPYEYDYIRAITLFKTAFTSRRELAGHLLLAE 90
L++D EY ++AI LF +A + +A +LL++
Sbjct: 205 TLHVDSAEYSCLKAIVLFTSAMGA---VASGVLLSD 237
>gi|380799419|gb|AFE71585.1| nuclear receptor subfamily 2 group F member 6, partial [Macaca
mulatta]
Length = 144
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 69/139 (49%), Gaps = 24/139 (17%)
Query: 119 RHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSE 178
R V ++V FQ +++ L +D EY ++AI LF
Sbjct: 14 RAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFT--------------------- 52
Query: 179 HPESC-LRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEEL 237
P++C L D + ++Q Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +L
Sbjct: 53 -PDACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQL 111
Query: 238 FFRNIIGHNTTIKKTIWHM 256
FF ++G T I+ I M
Sbjct: 112 FFMRLVG-KTPIETLIRDM 129
>gi|194754966|ref|XP_001959763.1| GF13031 [Drosophila ananassae]
gi|190621061|gb|EDV36585.1| GF13031 [Drosophila ananassae]
Length = 552
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 89/191 (46%), Gaps = 40/191 (20%)
Query: 86 LLLAESWRELFILGLAQYLPSLD-----LGELVESCKS-----------RHVDIEEEVIR 129
+LL ESW ELF+L Q+ LD L + E C + ++ +V
Sbjct: 385 ILLEESWSELFLLNAIQWCIPLDPTGCALFSVAEHCNNLENNANGDTCITKEELAADVRS 444
Query: 130 FQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVI 188
+ ++K + +DP E+ ++AI LF+ PE+ L+D
Sbjct: 445 LHEIFCKYKAVLVDPAEFACLKAIVLFR----------------------PETRGLKDPA 482
Query: 189 AIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTT 248
I +Q + L+++ T + +Q RF ++ L+LP L+ I S +E ++F+ IG NT
Sbjct: 483 QIENLQDQAHVMLSQHTKTQFTAQIARFGRLLLMLPLLRMISSHKIEAIYFQRTIG-NTP 541
Query: 249 IKKTIWHMYKN 259
++K + MYKN
Sbjct: 542 MEKVLCDMYKN 552
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 24/126 (19%)
Query: 2 LLLAESWRELFILGLAQYLPSLD-----LGELVESCKS-----------RHVDIEEEVIR 45
+LL ESW ELF+L Q+ LD L + E C + ++ +V
Sbjct: 385 ILLEESWSELFLLNAIQWCIPLDPTGCALFSVAEHCNNLENNANGDTCITKEELAADVRS 444
Query: 46 FQSVLNEFKVLNIDPYEYDYIRAITLFKTAFTSRRELA--------GHLLLAESWRELFI 97
+ ++K + +DP E+ ++AI LF+ ++ A H++L++ + F
Sbjct: 445 LHEIFCKYKAVLVDPAEFACLKAIVLFRPETRGLKDPAQIENLQDQAHVMLSQHTKTQFT 504
Query: 98 LGLAQY 103
+A++
Sbjct: 505 AQIARF 510
>gi|332021402|gb|EGI61770.1| Steroid receptor seven-up, isoforms B/C [Acromyrmex echinatior]
Length = 212
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 181 ESC-LRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFF 239
++C L DV I ++Q +Q L +Y T YP+QPTRF K+ L LP L+++ S V+E+LFF
Sbjct: 122 DACGLSDVAHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF 181
Query: 240 RNIIGHN 246
++G
Sbjct: 182 VRLVGKT 188
>gi|149036142|gb|EDL90808.1| nuclear receptor subfamily 2, group F, member 6, isoform CRA_b
[Rattus norvegicus]
Length = 134
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 69/139 (49%), Gaps = 24/139 (17%)
Query: 119 RHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSE 178
R V ++V FQ +++ L +D EY ++AI LF
Sbjct: 5 RAVAFMDQVRAFQEQVDKLGRLQVDAAEYGCLKAIALFT--------------------- 43
Query: 179 HPESC-LRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEEL 237
P++C L D + ++Q Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +L
Sbjct: 44 -PDACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQL 102
Query: 238 FFRNIIGHNTTIKKTIWHM 256
FF ++G T I+ I M
Sbjct: 103 FFMRLVG-KTPIETLIRDM 120
>gi|221330285|ref|NP_611032.2| hormone receptor 51 [Drosophila melanogaster]
gi|220902230|gb|AAM68536.2| hormone receptor 51 [Drosophila melanogaster]
gi|291490761|gb|ADE06696.1| RT06950p1 [Drosophila melanogaster]
Length = 582
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 89/191 (46%), Gaps = 40/191 (20%)
Query: 86 LLLAESWRELFILGLAQYLPSLD-----LGELVESCKS-----------RHVDIEEEVIR 129
+LL ESW ELF+L Q+ LD L + E C + ++ +V
Sbjct: 415 ILLEESWSELFLLNAIQWCIPLDPTGCALFSVAEHCNNLENNANGDTCITKEELAADVRT 474
Query: 130 FQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVI 188
+ ++K + +DP E+ ++AI LF+ PE+ L+D
Sbjct: 475 LHEIFCKYKAVLVDPAEFACLKAIVLFR----------------------PETRGLKDPA 512
Query: 189 AIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTT 248
I +Q + L+++ T + +Q RF ++ L+LP L+ I S +E ++F+ IG NT
Sbjct: 513 QIENLQDQAHVMLSQHTKTQFTAQIARFGRLLLMLPLLRMISSHKIESIYFQRTIG-NTP 571
Query: 249 IKKTIWHMYKN 259
++K + MYKN
Sbjct: 572 MEKVLCDMYKN 582
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 24/126 (19%)
Query: 2 LLLAESWRELFILGLAQYLPSLD-----LGELVESCKS-----------RHVDIEEEVIR 45
+LL ESW ELF+L Q+ LD L + E C + ++ +V
Sbjct: 415 ILLEESWSELFLLNAIQWCIPLDPTGCALFSVAEHCNNLENNANGDTCITKEELAADVRT 474
Query: 46 FQSVLNEFKVLNIDPYEYDYIRAITLFKTAFTSRRELA--------GHLLLAESWRELFI 97
+ ++K + +DP E+ ++AI LF+ ++ A H++L++ + F
Sbjct: 475 LHEIFCKYKAVLVDPAEFACLKAIVLFRPETRGLKDPAQIENLQDQAHVMLSQHTKTQFT 534
Query: 98 LGLAQY 103
+A++
Sbjct: 535 AQIARF 540
>gi|194882843|ref|XP_001975519.1| GG20513 [Drosophila erecta]
gi|190658706|gb|EDV55919.1| GG20513 [Drosophila erecta]
Length = 630
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 89/191 (46%), Gaps = 40/191 (20%)
Query: 86 LLLAESWRELFILGLAQYLPSLD-----LGELVESCKS-----------RHVDIEEEVIR 129
+LL ESW ELF+L Q+ LD L + E C + ++ +V
Sbjct: 463 ILLEESWSELFLLNAIQWCIPLDPTGCALFSVAEHCNNLENNANGDTCITREELAADVRT 522
Query: 130 FQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVI 188
+ ++K + +DP E+ ++AI LF+ PE+ L+D
Sbjct: 523 LHEIFCKYKAVLVDPAEFACLKAIVLFR----------------------PETRGLKDPA 560
Query: 189 AIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTT 248
I +Q + L+++ T + +Q RF ++ L+LP L+ I S +E ++F+ IG NT
Sbjct: 561 QIENLQDQAHVMLSQHTKTQFTAQIARFGRLLLMLPLLRMISSHKIESIYFQRTIG-NTP 619
Query: 249 IKKTIWHMYKN 259
++K + MYKN
Sbjct: 620 MEKVLCDMYKN 630
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 24/126 (19%)
Query: 2 LLLAESWRELFILGLAQYLPSLD-----LGELVESCKS-----------RHVDIEEEVIR 45
+LL ESW ELF+L Q+ LD L + E C + ++ +V
Sbjct: 463 ILLEESWSELFLLNAIQWCIPLDPTGCALFSVAEHCNNLENNANGDTCITREELAADVRT 522
Query: 46 FQSVLNEFKVLNIDPYEYDYIRAITLFKTAFTSRRELA--------GHLLLAESWRELFI 97
+ ++K + +DP E+ ++AI LF+ ++ A H++L++ + F
Sbjct: 523 LHEIFCKYKAVLVDPAEFACLKAIVLFRPETRGLKDPAQIENLQDQAHVMLSQHTKTQFT 582
Query: 98 LGLAQY 103
+A++
Sbjct: 583 AQIARF 588
>gi|195426545|ref|XP_002061388.1| GK20892 [Drosophila willistoni]
gi|194157473|gb|EDW72374.1| GK20892 [Drosophila willistoni]
Length = 573
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 89/194 (45%), Gaps = 44/194 (22%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELV-------------------ESCKSRHVDIEEE 126
+LL ESW ELF+L Q+ LD E+C S+ ++ +
Sbjct: 404 ILLEESWSELFLLNAIQWCIPLDPTGCALFSVAEHCNNLENNNNANGETCVSKE-ELAAD 462
Query: 127 VIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLR 185
V + ++K + +DP E+ ++AI LF+ PE+ L+
Sbjct: 463 VRTLHEIFCKYKAVLVDPAEFACLKAIVLFR----------------------PETRGLK 500
Query: 186 DVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
D I +Q + L+++ T + +Q RF ++ L+LP L+ I S +E ++F+ IG
Sbjct: 501 DPAQIENLQDQAHVMLSQHTKTQFAAQIARFGRLLLMLPLLRMINSHKIESIYFQRTIG- 559
Query: 246 NTTIKKTIWHMYKN 259
NT ++K + MYKN
Sbjct: 560 NTPMEKVLCDMYKN 573
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 56/129 (43%), Gaps = 28/129 (21%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELV-------------------ESCKSRHVDIEEE 42
+LL ESW ELF+L Q+ LD E+C S+ ++ +
Sbjct: 404 ILLEESWSELFLLNAIQWCIPLDPTGCALFSVAEHCNNLENNNNANGETCVSKE-ELAAD 462
Query: 43 VIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTAFTSRRELA--------GHLLLAESWRE 94
V + ++K + +DP E+ ++AI LF+ ++ A H++L++ +
Sbjct: 463 VRTLHEIFCKYKAVLVDPAEFACLKAIVLFRPETRGLKDPAQIENLQDQAHVMLSQHTKT 522
Query: 95 LFILGLAQY 103
F +A++
Sbjct: 523 QFAAQIARF 531
>gi|194223734|ref|XP_001499769.2| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Equus caballus]
Length = 185
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 69/139 (49%), Gaps = 24/139 (17%)
Query: 119 RHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSE 178
R V ++V FQ +++ L +D EY ++AI LF
Sbjct: 55 RAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFT--------------------- 93
Query: 179 HPESC-LRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEEL 237
P++C L D + ++Q Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +L
Sbjct: 94 -PDACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQL 152
Query: 238 FFRNIIGHNTTIKKTIWHM 256
FF ++G T I+ I M
Sbjct: 153 FFMRLVG-KTPIETLIRDM 170
>gi|312374365|gb|EFR21934.1| hypothetical protein AND_16007 [Anopheles darlingi]
Length = 162
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 181 ESC-LRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFF 239
++C L DV I ++Q +Q L +Y + YP+QPTRF K+ L LP L+++ S V+E+LFF
Sbjct: 72 DACGLSDVTHIESLQEKSQCALEEYCRSQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF 131
Query: 240 RNIIGHNTTIKKTIWHM 256
++G T I+ I M
Sbjct: 132 VRLVG-KTPIETLIRDM 147
>gi|351709883|gb|EHB12802.1| COUP transcription factor 1 [Heterocephalus glaber]
Length = 251
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Query: 161 EDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQ 220
E + +S S G H L D I ++Q +Q L +Y+ + YP+QP+RF K+
Sbjct: 140 ESQKGGEQSCSDWVLGLGHYACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLL 199
Query: 221 LILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 200 LRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 234
>gi|57116110|gb|AAW33564.1| small heterodimer partner [Gallus gallus]
Length = 262
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 79/188 (42%), Gaps = 36/188 (19%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---------------F 130
LLL W LF+LGL Q + + ++ E + ++ + R
Sbjct: 82 LLLDSCWVPLFLLGLVQEMVTFEVMETPAPSMLEKILLDGQSKRQEPEWTQPMLAAVQWL 141
Query: 131 QSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAI 190
Q LN F L++ P EY Y++ LF +V +S +S E L++V+ I
Sbjct: 142 QCSLNTFWSLDLSPKEYAYLKGAILFNP----DVPGLTASCTSRASMREAERALQEVVQI 197
Query: 191 AAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIK 250
++P RF I LI LKSIP ++ +LFFR IIG+ ++
Sbjct: 198 -----------------LHPKDQDRFALILLITSTLKSIPPALITDLFFRPIIGNADIVE 240
Query: 251 KTIWHMYK 258
+ +Y+
Sbjct: 241 LIVDMLYE 248
>gi|410949022|ref|XP_003981224.1| PREDICTED: COUP transcription factor 1, partial [Felis catus]
Length = 335
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 77/171 (45%), Gaps = 28/171 (16%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLNIDPYE 146
LL +W ELF+L AQ L + L+ + L+ P
Sbjct: 175 LLRLTWSELFVLNAAQCSMPLHVAPLLAA----------------------AGLHASPMS 212
Query: 147 YDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHTQIFLNKYI 205
D + A + +++V+ + +C L D I ++Q +Q L +Y+
Sbjct: 213 ADRVVAFMDHIRIFQEQVEKLKXXXXXXXXX----ACGLSDAAHIESLQEKSQCALEEYV 268
Query: 206 HTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
+ YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 269 RSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 318
>gi|301753845|ref|XP_002912831.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
F member 6-like, partial [Ailuropoda melanoleuca]
Length = 323
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 27/171 (15%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLNIDPYE 146
LL SW ELF+L + + + R V ++V FQ +++ L +D E
Sbjct: 164 LLRLSWSELFVLNXPLLAAAGLHAAPMAA--ERAVAFMDQVRAFQEQVDKLGRLQVD-SE 220
Query: 147 YDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHTQIFLNKYI 205
Y ++AI LF P++C L D + ++Q Q+ L +Y+
Sbjct: 221 YGCLKAIALFT----------------------PDACGLSDPAHVESLQEKAQVALTEYV 258
Query: 206 HTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+ I M
Sbjct: 259 RAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIETLIRDM 308
>gi|156389667|ref|XP_001635112.1| predicted protein [Nematostella vectensis]
gi|156222202|gb|EDO43049.1| predicted protein [Nematostella vectensis]
Length = 355
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 27/160 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDI----EEEVIRFQSVLNEFKVLN 141
+LL E W+ELF+L A + L++ L+ H D E+ Q +L +
Sbjct: 198 ILLEEGWKELFLLDAAYWALPLEIASLLAVTGGCHGDSYRHKASEIKLLQELLARLRSFQ 257
Query: 142 IDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHTQIF 200
+D E ++AI LF+ PE+ L+D + IQ H Q+
Sbjct: 258 MDLNELACLKAIVLFR----------------------PETKGLKDSDQVDKIQDHIQLL 295
Query: 201 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L + T +P+ P+RF K+ L + L S+ +E++ FR
Sbjct: 296 LAHHTMTKHPTHPSRFGKLLLSISPLHSLAEKPIEDVLFR 335
>gi|345317530|ref|XP_001520123.2| PREDICTED: COUP transcription factor 1-like [Ornithorhynchus
anatinus]
Length = 124
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 56/93 (60%), Gaps = 2/93 (2%)
Query: 165 KDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLIL 223
K+ R+ + + + ++C L D I ++Q +Q L +Y+ + YP+QP+RF K+ L L
Sbjct: 16 KETRNVAQAYRPTCFSDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRL 75
Query: 224 PRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
P L+++ S V+E+LFF ++G T I+ I M
Sbjct: 76 PSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 107
>gi|224587886|gb|ACN58733.1| Nuclear receptor subfamily 2 group F member 5 [Salmo salar]
Length = 178
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 75/159 (47%), Gaps = 29/159 (18%)
Query: 94 ELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFKVLNIDPY 145
ELF+L AQ L + L+ + R V + + FQ + + KVL +D
Sbjct: 1 ELFVLNAAQCSMPLHVAPLLAAAGLHASPMSAERVVAFMDHIRVFQEQVEKLKVLQVDTA 60
Query: 146 EYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYI 205
EY +++I LF +SD L DV + +IQ +Q L +Y+
Sbjct: 61 EYSCLKSIVLF---------------TSDAMG------LSDVAHVESIQEKSQCALEEYV 99
Query: 206 HTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
YPSQP RF ++ L LP L+ + S V+E+LFF ++G
Sbjct: 100 RNQYPSQPNRFGRLLLRLPSLRIVSSPVIEQLFFVRLVG 138
>gi|240978306|ref|XP_002402921.1| coup transcription factor, putative [Ixodes scapularis]
gi|215491245|gb|EEC00886.1| coup transcription factor, putative [Ixodes scapularis]
Length = 236
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 181 ESC-LRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFF 239
++C L DV I ++Q +Q L +Y T YP+QPTRF K+ L LP L+++ S V+E+LFF
Sbjct: 16 DACGLSDVAHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF 75
>gi|196015032|ref|XP_002117374.1| hypothetical protein TRIADDRAFT_16711 [Trichoplax adhaerens]
gi|190580127|gb|EDV20213.1| hypothetical protein TRIADDRAFT_16711 [Trichoplax adhaerens]
Length = 222
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 29/167 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESC-------KSRHVDIEEEVIRFQSVLNEFK 138
+LL SW E+F++ LA D +LV +C +SR ++E ++ +++
Sbjct: 65 VLLQASWLEVFMIDLAFRSMPYD-NKLVYACDMVMGHKQSRAAGLDEINRHAFELVTKYR 123
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+++D E+ ++AI L + D+R+ L DV + ++QG
Sbjct: 124 SISMDKQEFACLKAIALVNS-------DSRN--------------LTDVSRVESVQGTLY 162
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
+ L +Y YP QP RF ++ + LP LK+I S +E+LF + G
Sbjct: 163 LALQRYTLLNYPEQPLRFAQLLMTLPELKAISSRGIEKLFSIKVAGE 209
>gi|16797878|gb|AAL29197.1|AF323684_1 nuclear receptor AmNR4 isoform B [Acropora millepora]
Length = 408
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 74/179 (41%), Gaps = 41/179 (22%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVE--SCKSRHVDIE------------------E 125
+LL +W +LF+LG+AQ S L L+ + H D E +
Sbjct: 233 VLLQSTWSDLFMLGVAQCSSSFPLSPLLSLAAFHMEHRDSESNAQNRQPSSVNSDPNLID 292
Query: 126 EVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLR 185
+++ + +L + L +D EY +++AI LF + + L+
Sbjct: 293 KIVTVKELLFSLEKLELDSVEYAFLKAIVLFNSDCLN---------------------LK 331
Query: 186 DVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
+ + IQ L Y+ +P+ P RF KI L LP + + EELFF +IG
Sbjct: 332 NSKQVERIQDKAHCALKNYVENKHPNFPERFAKILLRLPATRMLTQRAAEELFFSPLIG 390
>gi|357622948|gb|EHJ74290.1| putative Orphan nuclear receptor NR6A1 [Danaus plexippus]
Length = 307
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 91/199 (45%), Gaps = 31/199 (15%)
Query: 65 YIRAITLFKTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD-- 122
++R + F+ S + + LL +W++LF+L LAQ+ DL L+ + +R
Sbjct: 116 WVRCLAPFQALAASDQAV----LLRAAWKDLFVLHLAQWSAPWDLAPLLAAPAARARLPS 171
Query: 123 ---IEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEH 179
++ E+ Q +L F+ + D E ++AI LF S G
Sbjct: 172 DPLVDLEINTLQEILCRFRQIAPDGSECGCMKAIVLF--------------SPDTPG--- 214
Query: 180 PESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFF 239
L + + +Q Q L Y+ T Y QPTRF ++ L+LP L+++ + +E L F
Sbjct: 215 ----LSETQPVEMLQDQAQCILADYVRTRYTRQPTRFGRLLLLLPSLRAVRARSIESLLF 270
Query: 240 RNIIGHNTTIKKTIWHMYK 258
R +G + ++ + MY+
Sbjct: 271 RETVG-DVSVATLLHDMYR 288
>gi|16797876|gb|AAL29196.1|AF323683_1 nuclear receptor AmNR4 isoform A [Acropora millepora]
Length = 416
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 83/201 (41%), Gaps = 45/201 (22%)
Query: 64 DYIRAITLFKTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVE--SCKSRHV 121
D+ ++I F+ S + +LL +W +LF+LG+AQ S L L+ + H
Sbjct: 223 DWAQSIQAFRCLENSDQ----LVLLQSTWSDLFMLGVAQCSSSFPLSPLLSLAAFHMEHR 278
Query: 122 DIE------------------EEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDE 163
D E ++++ + +L + L +D EY +++AI LF + +
Sbjct: 279 DSESNAQNRQPSSVNSDPNLIDKIVTVKELLFSLEKLELDSVEYAFLKAIVLFNSDCLN- 337
Query: 164 VKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLIL 223
L++ + IQ L Y+ +P+ P RF KI L L
Sbjct: 338 --------------------LKNSKQVERIQDKAHCALKNYVENKHPNFPERFAKILLRL 377
Query: 224 PRLKSIPSLVLEELFFRNIIG 244
P + + EELFF +IG
Sbjct: 378 PATRMLTQRAAEELFFSPLIG 398
>gi|321470051|gb|EFX81029.1| dissatisfaction-like protein [Daphnia pulex]
Length = 394
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 93/200 (46%), Gaps = 46/200 (23%)
Query: 65 YIRAITLFKTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------- 115
++R +T F+T + ++L LL ESW+ELF+L LAQ+ DLG ++
Sbjct: 187 WVRWLTPFQTLSRADQQL----LLQESWKELFLLYLAQWSSPWDLGAILTQRLMNRQQQQ 242
Query: 116 ----------CKSRHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVK 165
++ + + E+ Q +++ ++ L+ D E ++AI +FK
Sbjct: 243 QQQQHGGMRMMQADDLLLATEIKTIQELMSRYRQLSPDGSECGCLKAIAVFK-------- 294
Query: 166 DNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILP 224
PE+ L +V + +Q Q L Y+ YP Q TRF ++ L+LP
Sbjct: 295 --------------PETGGLSEVRPVELMQDQAQCILADYVRHRYPRQLTRFGRLLLLLP 340
Query: 225 RLKSIPSLVLEELFFRNIIG 244
L+ + S +E LFF++ +G
Sbjct: 341 CLRLVRSSTVELLFFKDTLG 360
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 19/92 (20%)
Query: 1 HLLLAESWRELFILGLAQYLPSLDLGELVES-------------------CKSRHVDIEE 41
LLL ESW+ELF+L LAQ+ DLG ++ ++ + +
Sbjct: 203 QLLLQESWKELFLLYLAQWSSPWDLGAILTQRLMNRQQQQQQQQHGGMRMMQADDLLLAT 262
Query: 42 EVIRFQSVLNEFKVLNIDPYEYDYIRAITLFK 73
E+ Q +++ ++ L+ D E ++AI +FK
Sbjct: 263 EIKTIQELMSRYRQLSPDGSECGCLKAIAVFK 294
>gi|291239171|ref|XP_002739506.1| PREDICTED: nuclear orphan receptor TR2/4-like [Saccoglossus
kowalevskii]
Length = 595
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 82/185 (44%), Gaps = 35/185 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + + ++ + W ELF LGLA+ ++ L ++ + R
Sbjct: 405 AFQALGQESHTTIVQKCWSELFTLGLAECSQAMALSAILTAIVNHLQTSVQQDKLSADRV 464
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q ++N L +D E+ Y++AITLF T +HP
Sbjct: 465 KVVMEHIWKLQELVNSISKLQVDSSEFAYLKAITLFST-------------------DHP 505
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L + + Q L +Y+ YP+ P RF K+ L LP L+ + ++EELFF
Sbjct: 506 G--LVNPRQLEKFQEKAVQELQEYVTRAYPASPDRFAKLLLRLPALRLLTPSIMEELFFA 563
Query: 241 NIIGH 245
+IG+
Sbjct: 564 GLIGN 568
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 14/86 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
++ + W ELF LGLA+ ++ L ++ + R + E + + Q
Sbjct: 417 IVQKCWSELFTLGLAECSQAMALSAILTAIVNHLQTSVQQDKLSADRVKVVMEHIWKLQE 476
Query: 49 VLNEFKVLNIDPYEYDYIRAITLFKT 74
++N L +D E+ Y++AITLF T
Sbjct: 477 LVNSISKLQVDSSEFAYLKAITLFST 502
>gi|355750064|gb|EHH54402.1| COUP transcription factor 1, partial [Macaca fascicularis]
Length = 269
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 181 ESC-LRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFF 239
++C L D I ++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF
Sbjct: 177 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 236
Query: 240 RNIIGHNTTIKKTIWHM 256
++G T I+ I M
Sbjct: 237 VRLVGK-TPIETLIRDM 252
>gi|195999876|ref|XP_002109806.1| hypothetical protein TRIADDRAFT_21656 [Trichoplax adhaerens]
gi|190587930|gb|EDV27972.1| hypothetical protein TRIADDRAFT_21656 [Trichoplax adhaerens]
Length = 352
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 24/160 (15%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCK---SRHVDIEEEVIRFQSVLNEFKVLNID 143
LL W ELFIL AQ+ P L++ + + ++ + FQ + + K ID
Sbjct: 195 LLRSCWSELFILNAAQWSPPLNMFPYSTTSNFYLTHPQEVMHHICLFQEAIVKLKKRFID 254
Query: 144 PYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNK 203
E+ ++A+ LF + V N + IQ + Q L +
Sbjct: 255 TTEFSCLKALILFNPDVRGLVNPN---------------------YVEYIQENIQCALKQ 293
Query: 204 YIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNII 243
++ + YP QP+RF + L L L+SI S V+EE+FF +++
Sbjct: 294 HVKSQYPDQPSRFGYLLLRLLMLRSISSKVIEEIFFTSVL 333
>gi|270008322|gb|EFA04770.1| hypothetical protein TcasGA2_TC030676 [Tribolium castaneum]
Length = 357
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 35/159 (22%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLNIDPY 145
+LL ESW ELF+L AQ+ +D +EE+ R + ++ +L +D
Sbjct: 218 ILLEESWSELFVLTAAQWAFPVD------------ETLEEDARRLREIITRLTLLRVDHT 265
Query: 146 EYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYI 205
E+ ++A+ LFK+ L + + +Q T + LN+Y
Sbjct: 266 EHACLKALVLFKSECRG---------------------LCEPSHVELLQDQTHVMLNEYC 304
Query: 206 HTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
+ RF K+ L LP ++++ LEEL FR +G
Sbjct: 305 NQRQTK--GRFGKLLLTLPAVQAVTRRGLEELIFRQTVG 341
Score = 40.0 bits (92), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 12/73 (16%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLNIDPY 61
+LL ESW ELF+L AQ+ +D +EE+ R + ++ +L +D
Sbjct: 218 ILLEESWSELFVLTAAQWAFPVD------------ETLEEDARRLREIITRLTLLRVDHT 265
Query: 62 EYDYIRAITLFKT 74
E+ ++A+ LFK+
Sbjct: 266 EHACLKALVLFKS 278
>gi|309747087|ref|NP_001026064.2| nuclear receptor subfamily 0 group B member 2 [Gallus gallus]
Length = 262
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 77/188 (40%), Gaps = 36/188 (19%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---------------F 130
LLL W LF+LGL Q + + ++ E + ++ + R
Sbjct: 82 LLLDSCWVPLFLLGLVQEMVTFEVMETPAPSMLEKILLDGQSKRQEPEWTQPMLAAVQWL 141
Query: 131 QSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAI 190
Q LN F L++ P EY Y++ LF + L + I
Sbjct: 142 QCSLNTFWSLDLSPKEYAYLKGAILFNPDVPG---------------------LTASLYI 180
Query: 191 AAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIK 250
++Q + L + + ++P RF I LI LKSIP ++ +LFFR IIG+ ++
Sbjct: 181 ESLQREAERALQEVVQILHPKDQDRFALILLITSTLKSIPPALITDLFFRPIIGNADIVE 240
Query: 251 KTIWHMYK 258
+ +Y+
Sbjct: 241 LIVDMLYE 248
>gi|327285576|ref|XP_003227509.1| PREDICTED: nuclear receptor subfamily 0 group B member 2-like
[Anolis carolinensis]
Length = 254
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 36/175 (20%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGE----------LVESCKSRHVDIEE-----EVIRF 130
LLL W LF+LGL Q + ++ E L++ + R V R
Sbjct: 87 LLLDSCWAPLFLLGLVQETVTFEVTETPAPSMLERILLDGPRKRPEPPRARPTLASVQRL 146
Query: 131 QSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAI 190
Q LN F L++ P EY Y++ LF ++ ++SS + + + L++V+A+
Sbjct: 147 QCCLNSFYSLDLSPKEYAYLKGAILFNP----DIPGLKASSYIESLQKEAQRALQEVLAL 202
Query: 191 AAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
++ RF ++ LI LKSIP +L +LFF+ IIG+
Sbjct: 203 LHLEDQG-----------------RFARVLLISSSLKSIPPSLLTDLFFQPIIGN 240
>gi|395538223|ref|XP_003771084.1| PREDICTED: nuclear receptor subfamily 2 group C member 1
[Sarcophilus harrisii]
Length = 605
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 80/186 (43%), Gaps = 36/186 (19%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSR-HVDIE-------------EEVIRFQS 132
L+ W ELF LGLAQ +++ ++ + +R H ++ E + + Q
Sbjct: 427 LVKAYWNELFTLGLAQCSQVMNVAMILAAFVNRLHNSLQQDKLSTERGKVMMEHIFKLQE 486
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
N L +D YEY Y++AI LF +HP L ++ I
Sbjct: 487 FCNSMVKLCLDGYEYAYLKAIVLFS-------------------PDHPG--LENMGQIEK 525
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
Q + Y+ YP R K+ L LP L+ + + + EELFF+ +IG N I
Sbjct: 526 FQEKAYMEFQDYLTKTYPDDTYRLSKLLLRLPALRLMSATITEELFFKGLIG-NVRIDSV 584
Query: 253 IWHMYK 258
I +++K
Sbjct: 585 IPYIFK 590
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESCKSR-HVDIE-------------EEVIRFQS 48
L+ W ELF LGLAQ +++ ++ + +R H ++ E + + Q
Sbjct: 427 LVKAYWNELFTLGLAQCSQVMNVAMILAAFVNRLHNSLQQDKLSTERGKVMMEHIFKLQE 486
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L +D YEY Y++AI LF
Sbjct: 487 FCNSMVKLCLDGYEYAYLKAIVLF 510
>gi|194386016|dbj|BAG65383.1| unnamed protein product [Homo sapiens]
Length = 396
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 77/186 (41%), Gaps = 36/186 (19%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 132
L+ W ELF LGLAQ +++ ++ + R + E + + Q
Sbjct: 218 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQDKMSTERRKLLMEHIFKLQE 277
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
N L ID YEY Y++AI LF +HP L ++ I
Sbjct: 278 FCNSMVKLCIDGYEYAYLKAIVLFS-------------------PDHP--SLENMEQIEK 316
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
QG + YI YP R ++ L LP L+ + + + EELFF+ +IG N I
Sbjct: 317 FQGKAYVEFQDYITKTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIG-NIRIDSV 375
Query: 253 IWHMYK 258
I H+ K
Sbjct: 376 IPHILK 381
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ +++ ++ + R + E + + Q
Sbjct: 218 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQDKMSTERRKLLMEHIFKLQE 277
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L ID YEY Y++AI LF
Sbjct: 278 FCNSMVKLCIDGYEYAYLKAIVLF 301
>gi|241647785|ref|XP_002409993.1| photoreceptor-specific nuclear receptor, putative [Ixodes
scapularis]
gi|215501485|gb|EEC10979.1| photoreceptor-specific nuclear receptor, putative [Ixodes
scapularis]
Length = 342
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 37/186 (19%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEE------------EVIRFQSV 133
+LL E+W ELF+L Q+ L+ L + H + +V Q +
Sbjct: 180 ILLEETWSELFLLCAIQWCLPLEASPLFSP--AEHAALAAHPANPGPKAPLADVRLLQEL 237
Query: 134 LNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLR-DVIAIAA 192
L F+ + +DP E+ ++AI LFK S+ GS P S R ++ A
Sbjct: 238 LARFRAIGVDPAEFACLKAILLFKAASR--------VSTKLLGSPRPLSVHRISLLYRTA 289
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
++ RF ++ L+LP L+ +P+ +E L+F+ IG NT ++K
Sbjct: 290 TNAGVGVY-------------RRFGRLLLMLPSLRYVPAERVEALYFQRTIG-NTPMEKL 335
Query: 253 IWHMYK 258
+ M+K
Sbjct: 336 LCDMFK 341
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 14/95 (14%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEE------------EVIRFQSV 49
+LL E+W ELF+L Q+ L+ L + H + +V Q +
Sbjct: 180 ILLEETWSELFLLCAIQWCLPLEASPLFSP--AEHAALAAHPANPGPKAPLADVRLLQEL 237
Query: 50 LNEFKVLNIDPYEYDYIRAITLFKTAFTSRRELAG 84
L F+ + +DP E+ ++AI LFK A +L G
Sbjct: 238 LARFRAIGVDPAEFACLKAILLFKAASRVSTKLLG 272
>gi|332023687|gb|EGI63911.1| Photoreceptor-specific nuclear receptor [Acromyrmex echinatior]
Length = 730
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 82/197 (41%), Gaps = 46/197 (23%)
Query: 86 LLLAESWRELFILGLAQYL------PSLDLGELV----------------ESCKSRHVDI 123
+LL E W ELF+L Q+ P EL ++ + +
Sbjct: 436 ILLEEVWSELFLLNAVQWCLPLESSPLFSAAELTALTLSPHPHPHSGLHLQTTTGKPSQV 495
Query: 124 EEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES- 182
+V L +K + +DP E+ ++AI LF+ PE+
Sbjct: 496 AADVRHLHDTLQRYKAVMVDPAEFACMKAIVLFR----------------------PETR 533
Query: 183 CLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNI 242
L+D I +Q Q+ L + P+ P RF ++ L+LP L+++P+ +E ++F
Sbjct: 534 GLKDSSQIENLQDQAQLMLGHHARAQQPNSPARFGRLLLLLPLLRTVPAARVELIYFHRT 593
Query: 243 IGHNTTIKKTIWHMYKN 259
IG NT ++K + + N
Sbjct: 594 IG-NTPMEKVLCDISGN 609
>gi|432907930|ref|XP_004077711.1| PREDICTED: nuclear receptor subfamily 0 group B member 2-like
[Oryzias latipes]
Length = 280
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 69/173 (39%), Gaps = 35/173 (20%)
Query: 87 LLAESWRELFILGLAQ--------------YLPSLDLGELVESCKSRHVDIEEEVIRFQS 132
LL W LFILGLAQ L + L R V + +S
Sbjct: 115 LLRSCWAPLFILGLAQEHVDFEVTDAPADSMLKKILLNRQESPEAKREQPTMAGVSKLKS 174
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
L +F L++ P EY Y++ T+F + PE L+ + +
Sbjct: 175 CLKKFWSLDLSPKEYAYLKGTTIFNPDV-------------------PE--LKAGLFVEG 213
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
+Q Q L + + ++P + RF +I L L+ I ++ ELFFR +IG
Sbjct: 214 LQQEAQHALREVVQLLHPGREERFARILLTASMLQGITPTLVTELFFRPVIGQ 266
>gi|351714332|gb|EHB17251.1| Photoreceptor-specific nuclear receptor [Heterocephalus glaber]
Length = 351
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 29/138 (21%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVI-------RF-QSVLNEF 137
+LL E+W ELF+LG Q+ LD L+ ++ + + RF Q + F
Sbjct: 235 ILLEEAWGELFLLGAIQWSLPLDSCPLLSPAEASAAGSSQGRLALASGERRFLQETVARF 294
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+VL +DP E+ ++A+ LFK E P L+D + A+Q +
Sbjct: 295 QVLAVDPTEFACMKALVLFKP-------------------ETPG--LKDPEHVEALQDQS 333
Query: 198 QIFLNKYIHTVYPSQPTR 215
Q+ L+++ +PSQP R
Sbjct: 334 QMMLSQHSKAHHPSQPVR 351
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVI-------RF-QSVLNEF 53
+LL E+W ELF+LG Q+ LD L+ ++ + + RF Q + F
Sbjct: 235 ILLEEAWGELFLLGAIQWSLPLDSCPLLSPAEASAAGSSQGRLALASGERRFLQETVARF 294
Query: 54 KVLNIDPYEYDYIRAITLFK 73
+VL +DP E+ ++A+ LFK
Sbjct: 295 QVLAVDPTEFACMKALVLFK 314
>gi|7706515|ref|NP_057430.1| photoreceptor-specific nuclear receptor isoform a [Homo sapiens]
gi|6651225|gb|AAF22227.1|AF148128_1 nuclear receptor [Homo sapiens]
gi|119598283|gb|EAW77877.1| nuclear receptor subfamily 2, group E, member 3, isoform CRA_b
[Homo sapiens]
gi|325495505|gb|ADZ17358.1| photoreceptor cell-specific nuclear receptor variant 1 [Homo
sapiens]
Length = 367
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 31/139 (22%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVE--------SCKSRHVDIEEEVIRFQSVLNEF 137
+LL E+W ELF+LG Q+ LD L+ + R E Q ++ F
Sbjct: 251 ILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAQGRLTLASMETRVLQETISRF 310
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGH 196
+ L +DP E+ ++A+ LFK PE+ L+D + A+Q
Sbjct: 311 RALAVDPTEFACMKALVLFK----------------------PETRGLKDPEHVEALQDQ 348
Query: 197 TQIFLNKYIHTVYPSQPTR 215
+Q+ L+++ +PSQP R
Sbjct: 349 SQVMLSQHSKAHHPSQPVR 367
Score = 43.5 bits (101), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVE--------SCKSRHVDIEEEVIRFQSVLNEF 53
+LL E+W ELF+LG Q+ LD L+ + R E Q ++ F
Sbjct: 251 ILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAQGRLTLASMETRVLQETISRF 310
Query: 54 KVLNIDPYEYDYIRAITLFK 73
+ L +DP E+ ++A+ LFK
Sbjct: 311 RALAVDPTEFACMKALVLFK 330
>gi|121484110|gb|ABM54395.1| NR2E3 [Pan paniscus]
Length = 76
Score = 54.3 bits (129), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 184 LRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNII 243
L+D + A+Q +Q+ L+++ +PSQP RF K+ L+LP L+ I + +E LFFR I
Sbjct: 2 LKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTI 61
Query: 244 GHNTTIKKTIWHMYKN 259
G NT ++K + M+KN
Sbjct: 62 G-NTPMEKLLCDMFKN 76
>gi|403276111|ref|XP_003929757.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 [Saimiri
boliviensis boliviensis]
Length = 470
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 79/187 (42%), Gaps = 36/187 (19%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELV--------ESCKSRHVDIE------EEVIRFQ 131
LL+ W ELF LGLAQ +++ ++ S + + IE + + R Q
Sbjct: 291 LLVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQDKMSIERRKLLMDHIFRLQ 350
Query: 132 SVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIA 191
N L ID YEY Y++AI LF +HP L ++ I
Sbjct: 351 EFCNSMVKLCIDGYEYAYLKAIVLFS-------------------PDHPG--LENMEQIE 389
Query: 192 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 251
Q + YI YP R ++ L LP L+ + + + EELFF+ +IG N I
Sbjct: 390 KFQEKAYVEFQDYITKTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIG-NIRIDS 448
Query: 252 TIWHMYK 258
I H+ K
Sbjct: 449 VIPHILK 455
Score = 43.5 bits (101), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 14/85 (16%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELV--------ESCKSRHVDIE------EEVIRFQ 47
LL+ W ELF LGLAQ +++ ++ S + + IE + + R Q
Sbjct: 291 LLVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQDKMSIERRKLLMDHIFRLQ 350
Query: 48 SVLNEFKVLNIDPYEYDYIRAITLF 72
N L ID YEY Y++AI LF
Sbjct: 351 EFCNSMVKLCIDGYEYAYLKAIVLF 375
>gi|403303546|ref|XP_003942387.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Saimiri
boliviensis boliviensis]
Length = 238
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 24/128 (18%)
Query: 130 FQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVI 188
FQ +++ L +D EY ++AI LF P++C L D
Sbjct: 119 FQEQVDKLGRLQVDSAEYGCLKAIALFT----------------------PDACGLSDPA 156
Query: 189 AIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTT 248
+ ++Q Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T
Sbjct: 157 HVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTP 215
Query: 249 IKKTIWHM 256
I+ I M
Sbjct: 216 IETLIRDM 223
>gi|449283567|gb|EMC90172.1| Nuclear receptor subfamily 0 group B member 2, partial [Columba
livia]
Length = 216
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 76/180 (42%), Gaps = 39/180 (21%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEE------------------EV 127
+LL ++W LF+LG+AQ DL E+ + + + + EV
Sbjct: 42 VLLQQNWAPLFVLGMAQQGVDFDLREISAPSLLKKILLNQSLTDCNELGSSSLGASLAEV 101
Query: 128 IRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDV 187
+ +++L +F L+I EY Y++ I LF D H CL V
Sbjct: 102 EKMKNLLWKFWDLDISAKEYAYLKGIILF------------------DSGCHVLKCLPYV 143
Query: 188 IAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNT 247
+Q Q L ++ TV+ RF I ++ L+ I + +EELFFR I+G T
Sbjct: 144 ---QILQQEAQQALMEFTSTVFHRNLGRFTWIIQLIASLQDISADAVEELFFRPILGKAT 200
>gi|326932850|ref|XP_003212525.1| PREDICTED: nuclear receptor subfamily 0 group B member 2-like
[Meleagris gallopavo]
Length = 268
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 76/188 (40%), Gaps = 36/188 (19%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---------------F 130
LLL W LF+LGL Q + ++ E + ++ + R
Sbjct: 88 LLLDSCWVPLFLLGLVQETVTFEVMETPAPSMLEKILLDGQSKRQEPEWTQPMLAAVQWL 147
Query: 131 QSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAI 190
Q LN F L++ P EY Y++ LF + L + I
Sbjct: 148 QCSLNTFWSLDLSPKEYAYLKGAILFNPDVPG---------------------LTASLYI 186
Query: 191 AAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIK 250
++Q + L + + ++P RF I LI LKSIP ++ +LFFR +IG+ ++
Sbjct: 187 ESLQREAERALQEVVRILHPEDQDRFALILLITSTLKSIPPALITDLFFRPVIGNADIVE 246
Query: 251 KTIWHMYK 258
+ +Y+
Sbjct: 247 LIVDMLYE 254
>gi|224081638|ref|XP_002191963.1| PREDICTED: nuclear receptor subfamily 0 group B member 2
[Taeniopygia guttata]
Length = 265
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 75/175 (42%), Gaps = 41/175 (23%)
Query: 86 LLLAESWRELFILGLAQYL----------PSLDLGELVESCKSRHVDIE------EEVIR 129
LLL W LF+LGL Q + PS+ L +++ S +S+ + E V R
Sbjct: 88 LLLDGCWVPLFLLGLVQEMVTFEVMEAPAPSM-LKKILLSGQSKGQEPEGTQPTLAAVQR 146
Query: 130 FQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIA 189
Q L+ F L++ P E+ Y+R LF I LR +
Sbjct: 147 LQWCLSSFWRLDLSPSEFTYLRGAVLFNPDIPG---------------------LRAALY 185
Query: 190 IAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
I ++Q Q L + +H P RF I + L++IP+ ++ LFFR +IG
Sbjct: 186 IESLQWEAQRALQELLH---PEDQARFSHILRVTSSLRAIPAGLVTALFFRPLIG 237
>gi|334328352|ref|XP_001370469.2| PREDICTED: nuclear receptor subfamily 0 group B member 2
[Monodelphis domestica]
Length = 253
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 68/172 (39%), Gaps = 34/172 (19%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEE-------------VIRFQS 132
LLLA W LF+LGLAQ + ++ E+ + + +EE V R Q
Sbjct: 88 LLLANCWAPLFLLGLAQDAVTFEVTEMPAPSMLKKILLEERSPEPQRPQPTLAGVHRLQC 147
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
L+ F +++ P EY Y++ LF L+ V I
Sbjct: 148 CLHTFWSMDLSPKEYAYLKGAILFNPDTPG---------------------LQTVSYIKG 186
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
+ + L + + +P F +I L+ LKSIP +L LFF + G
Sbjct: 187 LHQEAEQALQEALALHHPVDRGCFARILLVTSTLKSIPPALLSSLFFHPMFG 238
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 13/85 (15%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEE-------------VIRFQS 48
LLLA W LF+LGLAQ + ++ E+ + + +EE V R Q
Sbjct: 88 LLLANCWAPLFLLGLAQDAVTFEVTEMPAPSMLKKILLEERSPEPQRPQPTLAGVHRLQC 147
Query: 49 VLNEFKVLNIDPYEYDYIRAITLFK 73
L+ F +++ P EY Y++ LF
Sbjct: 148 CLHTFWSMDLSPKEYAYLKGAILFN 172
>gi|296212600|ref|XP_002752912.1| PREDICTED: nuclear receptor subfamily 2 group C member 1
[Callithrix jacchus]
Length = 604
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 79/187 (42%), Gaps = 36/187 (19%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVES-CKSRHVDIEEE-------------VIRFQ 131
LL+ W ELF LGLAQ +++ ++ + H ++++ + R Q
Sbjct: 425 LLVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQDKMSTERRKLLMDHIFRLQ 484
Query: 132 SVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIA 191
N L ID YEY Y++AI LF +HP L ++ I
Sbjct: 485 EFCNSMVKLCIDGYEYAYLKAIVLFS-------------------PDHPG--LENMEQIE 523
Query: 192 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 251
Q + YI YP R ++ L LP L+ + + + EELFF+ +IG N I
Sbjct: 524 KFQEKAYVEFQDYITKTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIG-NIRIDS 582
Query: 252 TIWHMYK 258
I H+ K
Sbjct: 583 VIPHILK 589
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 14/85 (16%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVES-CKSRHVDIEEE-------------VIRFQ 47
LL+ W ELF LGLAQ +++ ++ + H ++++ + R Q
Sbjct: 425 LLVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQDKMSTERRKLLMDHIFRLQ 484
Query: 48 SVLNEFKVLNIDPYEYDYIRAITLF 72
N L ID YEY Y++AI LF
Sbjct: 485 EFCNSMVKLCIDGYEYAYLKAIVLF 509
>gi|443691595|gb|ELT93409.1| hypothetical protein CAPTEDRAFT_164614 [Capitella teleta]
Length = 540
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 72/178 (40%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I G + ++ G L+ + H + F VL E +
Sbjct: 377 ILLRAGWNELLIAGFSHRSTAVKDGILLATGLHVHRSSAHQAGVGTIFDRVLTELVAKMR 436
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+N+D E +RAI LF + L + + A++
Sbjct: 437 EMNMDKTELGCLRAIVLFNPDAKG---------------------LSAITDVEALREKVY 475
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L +Y T YP +P RF K+ L LP L+SI +E LFF +IG +T I + M
Sbjct: 476 ASLEEYCKTHYPEEPGRFAKLLLRLPALRSIGLKCMEHLFFFKLIG-DTPIDSFLMEM 532
>gi|21310109|gb|AAM46150.1|AF378828_1 nuclear orphan receptor TR2/4 [Branchiostoma floridae]
Length = 511
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 74/169 (43%), Gaps = 37/169 (21%)
Query: 92 WRELFILGLAQ-----YLPSLDLGELVESCKS----------RHVDIEEEVIRFQSVLNE 136
W ELF LGL+Q LP++ L +V +S R + E + + Q +N+
Sbjct: 338 WSELFTLGLSQCSAVMSLPTI-LTAIVNHLQSSVQADKLSADRVKVVMEHIWKLQEFINK 396
Query: 137 FKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGH 196
L +DP EY Y++AI LF T +HP L + I Q
Sbjct: 397 MAALTVDPTEYAYMKAIVLFST-------------------DHPG--LLNPRQIEKFQEK 435
Query: 197 TQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
L +Y +P RF K+ L LP L+ + ++EELFF +IG+
Sbjct: 436 AHEELKEYEAQAHPDDTERFAKLLLRLPALRLLSPSIMEELFFAGLIGN 484
Score = 43.5 bits (101), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 16/82 (19%)
Query: 8 WRELFILGLAQ-----YLPSLDLGELVESCKS----------RHVDIEEEVIRFQSVLNE 52
W ELF LGL+Q LP++ L +V +S R + E + + Q +N+
Sbjct: 338 WSELFTLGLSQCSAVMSLPTI-LTAIVNHLQSSVQADKLSADRVKVVMEHIWKLQEFINK 396
Query: 53 FKVLNIDPYEYDYIRAITLFKT 74
L +DP EY Y++AI LF T
Sbjct: 397 MAALTVDPTEYAYMKAIVLFST 418
>gi|395521855|ref|XP_003765030.1| PREDICTED: nuclear receptor subfamily 0 group B member 2
[Sarcophilus harrisii]
Length = 253
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 77/184 (41%), Gaps = 35/184 (19%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEE-------------VIRFQS 132
LLL SW LF+LGLAQ ++++ E+ + + +EE V R Q
Sbjct: 88 LLLVNSWAPLFLLGLAQDAVTIEVTEMPAPSMLKKILLEERSPEPQTPQATLAGVYRLQC 147
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
L+ F L++ P EY Y++ LF + +S+S + E L++ +A+
Sbjct: 148 CLHTFWSLDLSPKEYAYLKGAILFN----PDTPGLQSASHVESLHREAEQVLQEALALH- 202
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
+P F +I L+ LKSI +L LFF + G + I +
Sbjct: 203 ----------------HPVDHGCFGRILLVASTLKSISPALLSSLFFHPMFG-DADITRL 245
Query: 253 IWHM 256
I M
Sbjct: 246 ILDM 249
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 13/85 (15%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEE-------------VIRFQS 48
LLL SW LF+LGLAQ ++++ E+ + + +EE V R Q
Sbjct: 88 LLLVNSWAPLFLLGLAQDAVTIEVTEMPAPSMLKKILLEERSPEPQTPQATLAGVYRLQC 147
Query: 49 VLNEFKVLNIDPYEYDYIRAITLFK 73
L+ F L++ P EY Y++ LF
Sbjct: 148 CLHTFWSLDLSPKEYAYLKGAILFN 172
>gi|260809813|ref|XP_002599699.1| hypothetical protein BRAFLDRAFT_56643 [Branchiostoma floridae]
gi|229284980|gb|EEN55711.1| hypothetical protein BRAFLDRAFT_56643 [Branchiostoma floridae]
Length = 632
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 74/169 (43%), Gaps = 37/169 (21%)
Query: 92 WRELFILGLAQ-----YLPSLDLGELVESCKS----------RHVDIEEEVIRFQSVLNE 136
W ELF LGL+Q LP++ L +V +S R + E + + Q +N+
Sbjct: 463 WSELFTLGLSQCSAVMSLPTI-LTAIVNHLQSSVQADKLSADRVKVVMEHIWKLQEFINK 521
Query: 137 FKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGH 196
L +DP EY Y++AI LF T +HP L + I Q
Sbjct: 522 MAALTVDPTEYAYMKAIVLFST-------------------DHPG--LLNPRQIEKFQEK 560
Query: 197 TQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
L +Y +P RF K+ L LP L+ + ++EELFF +IG+
Sbjct: 561 AHEELKEYEAQAHPDDTERFAKLLLRLPALRLLSPSIMEELFFAGLIGN 609
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 16/82 (19%)
Query: 8 WRELFILGLAQ-----YLPSLDLGELVESCKS----------RHVDIEEEVIRFQSVLNE 52
W ELF LGL+Q LP++ L +V +S R + E + + Q +N+
Sbjct: 463 WSELFTLGLSQCSAVMSLPTI-LTAIVNHLQSSVQADKLSADRVKVVMEHIWKLQEFINK 521
Query: 53 FKVLNIDPYEYDYIRAITLFKT 74
L +DP EY Y++AI LF T
Sbjct: 522 MAALTVDPTEYAYMKAIVLFST 543
>gi|354478543|ref|XP_003501474.1| PREDICTED: nuclear receptor subfamily 2 group C member 1
[Cricetulus griseus]
gi|344252291|gb|EGW08395.1| Nuclear receptor subfamily 2 group C member 1 [Cricetulus griseus]
Length = 590
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 77/186 (41%), Gaps = 36/186 (19%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 132
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 412 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHSSLQQDKMSPERRKSLMEHIFKLQE 471
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
N L ID YEY Y++AI LF +HP L ++ I
Sbjct: 472 FCNSMVKLCIDGYEYAYLKAIVLFS-------------------PDHPG--LENMELIEK 510
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
Q + YI YP R ++ L LP L+ + + + EELFF+ +IG N I
Sbjct: 511 FQEKAYVEFQDYITRTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIG-NVRIDSV 569
Query: 253 IWHMYK 258
I H+ K
Sbjct: 570 IPHILK 575
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 412 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHSSLQQDKMSPERRKSLMEHIFKLQE 471
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L ID YEY Y++AI LF
Sbjct: 472 FCNSMVKLCIDGYEYAYLKAIVLF 495
>gi|16565495|gb|AAL26246.1| retinoid X receptor [Petromyzon marinus]
Length = 237
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 64/166 (38%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + + G L+ + H F VL E +
Sbjct: 91 ILLRAGWNELLIASFSHRSIGVSDGILLTTGLHVHRSSAHSAGVGSIFDRVLTELVSKMR 150
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+N+D E +RAI LF D + SS D + A+Q
Sbjct: 151 DMNMDKAELGCLRAIVLFNP-------DAKGLSSPSD--------------VEALQEKVY 189
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 190 ASLESYCKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 235
>gi|6754886|ref|NP_035980.1| nuclear receptor subfamily 0 group B member 2 [Mus musculus]
gi|9978747|sp|Q62227.1|NR0B2_MOUSE RecName: Full=Nuclear receptor subfamily 0 group B member 2;
AltName: Full=Orphan nuclear receptor SHP; AltName:
Full=Small heterodimer partner
gi|1374949|gb|AAB59732.1| shp [Mus musculus]
gi|18043452|gb|AAH19540.1| Nuclear receptor subfamily 0, group B, member 2 [Mus musculus]
gi|33860557|gb|AAQ55057.1| nuclear receptor subfamily 0 group B member 2 [Mus musculus]
gi|33860559|gb|AAQ55058.1| nuclear receptor subfamily 0 group B member 2 [Mus musculus]
gi|148698113|gb|EDL30060.1| nuclear receptor subfamily 0, group B, member 2, isoform CRA_b [Mus
musculus]
Length = 260
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 67/177 (37%), Gaps = 40/177 (22%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEE-------------------V 127
LL W LF+LGLAQ + ++ E + + +EE V
Sbjct: 90 LLECCWGPLFLLGLAQDAVTFEVAEAPVPSILKKILLEEASSGTQGAQPSDRPQPSLAAV 149
Query: 128 IRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDV 187
Q L F L + P EY Y++ LF + LR
Sbjct: 150 QWLQRCLESFWSLELGPKEYAYLKGTILFNPDVPG---------------------LRAS 188
Query: 188 IAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
IA +Q L + + YP+ R +I L+ LK+IP +L +LFFR I+G
Sbjct: 189 CHIAHLQQEAHWALCEVLEPWYPASQGRLARILLMASTLKNIPGTLLVDLFFRPIMG 245
>gi|260829327|ref|XP_002609613.1| hypothetical protein BRAFLDRAFT_87834 [Branchiostoma floridae]
gi|229294975|gb|EEN65623.1| hypothetical protein BRAFLDRAFT_87834 [Branchiostoma floridae]
Length = 414
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 81/208 (38%), Gaps = 59/208 (28%)
Query: 64 DYIRAITLFKTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDL----GELVESCKSR 119
D++R + AFT LLL SW E+ +G+AQ +D E C
Sbjct: 227 DFMRKLP----AFTYLPPNDQMLLLMRSWHEIVAIGVAQEKVPIDTVSVPAPPCECCTGA 282
Query: 120 HV----------------------DIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFK 157
+ DI++ V+++QS L++D E Y++A LF
Sbjct: 283 EMHWGGTPPPTLTMPGCILSSDLDDIQQFVMKYQS-------LDLDCKEAAYLKAAVLFT 335
Query: 158 TVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFC 217
V G HP I A+Q Q LN+Y P + RF
Sbjct: 336 PV---------------PGLAHPH-------YIEALQKEAQQALNEYTMMTRPLETLRFA 373
Query: 218 KIQLILPRLKSIPSLVLEELFFRNIIGH 245
+I L++P L+ I + ELFFR +I +
Sbjct: 374 RILLMVPLLRGIKQEPITELFFRPLIAN 401
>gi|318037481|ref|NP_001187723.1| nuclear receptor subfamily 0 group b member 2 [Ictalurus punctatus]
gi|308323803|gb|ADO29037.1| nuclear receptor subfamily 0 group b member 2 [Ictalurus punctatus]
Length = 268
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 73/176 (41%), Gaps = 38/176 (21%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESC-------KSRHVDIEEEVIRF-------- 130
LLL W LF+LGLAQ + ++ + + + ++ D E+E F
Sbjct: 96 LLLRSHWVPLFLLGLAQERITFEVADFPTASFLRKILLRDQNTDSEQETEDFPLNLAAVH 155
Query: 131 --QSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVI 188
+S L+ L + P EY Y++ LF + PE L +
Sbjct: 156 NLRSCLDNLWRLELTPEEYVYLKGTILFNPDV-------------------PE--LINCK 194
Query: 189 AIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
I +Q Q L++ IH V+P+ +R + L L ++ + ELFFR +IG
Sbjct: 195 LIEGLQMEAQQLLHQVIHKVHPNDHSRLTSVLLTASSLHTVTQNFVTELFFRRVIG 250
>gi|311256682|ref|XP_003126756.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-like [Sus
scrofa]
Length = 605
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 77/186 (41%), Gaps = 36/186 (19%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 132
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 427 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHSSLQQDKMSTERRKVLMEHIFKLQE 486
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
N L ID YEY Y++AI LF +HP L ++ I
Sbjct: 487 FCNSMVKLCIDGYEYAYLKAIVLFS-------------------PDHPG--LENMEQIEK 525
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
Q + YI YP R ++ L LP L+ + + + EELFF+ +IG N I
Sbjct: 526 FQEKAYVEFQDYITKTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIG-NVRIDSV 584
Query: 253 IWHMYK 258
I H+ K
Sbjct: 585 IPHILK 590
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 427 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHSSLQQDKMSTERRKVLMEHIFKLQE 486
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L ID YEY Y++AI LF
Sbjct: 487 FCNSMVKLCIDGYEYAYLKAIVLF 510
>gi|291389741|ref|XP_002711252.1| PREDICTED: nuclear receptor subfamily 2, group C, member 1
[Oryctolagus cuniculus]
Length = 605
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 77/186 (41%), Gaps = 36/186 (19%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 132
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 427 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQDKMSTERRKLLMEHIFKLQE 486
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
N L ID YEY Y++AI LF +HP L ++ I
Sbjct: 487 FCNSMVKLCIDGYEYAYLKAIVLFS-------------------PDHPG--LENMEQIEK 525
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
Q + YI YP R ++ L LP L+ + + + EELFF+ +IG N I
Sbjct: 526 FQEKAYVEFQDYITKTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIG-NVRIDSV 584
Query: 253 IWHMYK 258
I H+ K
Sbjct: 585 IPHILK 590
Score = 40.8 bits (94), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 427 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQDKMSTERRKLLMEHIFKLQE 486
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L ID YEY Y++AI LF
Sbjct: 487 FCNSMVKLCIDGYEYAYLKAIVLF 510
>gi|327272700|ref|XP_003221122.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-A-like
[Anolis carolinensis]
Length = 641
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 72/173 (41%), Gaps = 35/173 (20%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 132
L+ W ELFILGLAQ +++ ++ + R + E + + Q
Sbjct: 463 LVKACWNELFILGLAQCSQVMNVATILAAFVNHLHNSLQQDKLSADRGKLVMEHIFKLQE 522
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
N L +D YEY Y++AI LF +HP L +V I
Sbjct: 523 FCNSMVKLCLDGYEYAYLKAIVLFS-------------------PDHPG--LENVQQIEK 561
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
Q + YI VYP R ++ L LP L+ + + + EELFF +IG+
Sbjct: 562 FQEKAYMEFQDYITKVYPDDTYRLSRLLLRLPALRLMSAAITEELFFAGLIGN 614
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELFILGLAQ +++ ++ + R + E + + Q
Sbjct: 463 LVKACWNELFILGLAQCSQVMNVATILAAFVNHLHNSLQQDKLSADRGKLVMEHIFKLQE 522
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L +D YEY Y++AI LF
Sbjct: 523 FCNSMVKLCLDGYEYAYLKAIVLF 546
>gi|301767748|ref|XP_002919289.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-like
[Ailuropoda melanoleuca]
Length = 605
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 77/186 (41%), Gaps = 36/186 (19%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 132
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 427 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHSSLQQDKMSTERRKLLMEHIFKLQE 486
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
N L ID YEY Y++AI LF +HP L ++ I
Sbjct: 487 FCNSMVKLCIDGYEYAYLKAIVLFS-------------------PDHPG--LENMEQIEK 525
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
Q + YI YP R ++ L LP L+ + + + EELFF+ +IG N I
Sbjct: 526 FQEKAYVEFQDYITKTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIG-NVRIDSV 584
Query: 253 IWHMYK 258
I H+ K
Sbjct: 585 IPHILK 590
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 427 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHSSLQQDKMSTERRKLLMEHIFKLQE 486
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L ID YEY Y++AI LF
Sbjct: 487 FCNSMVKLCIDGYEYAYLKAIVLF 510
>gi|189491739|ref|NP_003288.2| nuclear receptor subfamily 2 group C member 1 isoform a [Homo
sapiens]
gi|226693548|sp|P13056.2|NR2C1_HUMAN RecName: Full=Nuclear receptor subfamily 2 group C member 1;
AltName: Full=Orphan nuclear receptor TR2; AltName:
Full=Testicular receptor 2
gi|119617925|gb|EAW97519.1| nuclear receptor subfamily 2, group C, member 1, isoform CRA_c
[Homo sapiens]
gi|307686061|dbj|BAJ20961.1| nuclear receptor subfamily 2, group C, member 1 [synthetic
construct]
gi|381146193|gb|AFF59487.1| testicular nuclear receptor 2 variant 1 [Homo sapiens]
Length = 603
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 77/186 (41%), Gaps = 36/186 (19%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 132
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 425 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQDKMSTERRKLLMEHIFKLQE 484
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
N L ID YEY Y++AI LF +HP L ++ I
Sbjct: 485 FCNSMVKLCIDGYEYAYLKAIVLFS-------------------PDHPS--LENMEQIEK 523
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
Q + YI YP R ++ L LP L+ + + + EELFF+ +IG N I
Sbjct: 524 FQEKAYVEFQDYITKTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIG-NIRIDSV 582
Query: 253 IWHMYK 258
I H+ K
Sbjct: 583 IPHILK 588
Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 425 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQDKMSTERRKLLMEHIFKLQE 484
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L ID YEY Y++AI LF
Sbjct: 485 FCNSMVKLCIDGYEYAYLKAIVLF 508
>gi|73978201|ref|XP_854792.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 [Canis
lupus familiaris]
Length = 605
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 77/186 (41%), Gaps = 36/186 (19%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 132
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 427 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHSSLQQDKMSTERRKLLMEHIFKLQE 486
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
N L ID YEY Y++AI LF +HP L ++ I
Sbjct: 487 FCNSMVKLCIDGYEYAYLKAIVLFS-------------------PDHPG--LENMEQIEK 525
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
Q + YI YP R ++ L LP L+ + + + EELFF+ +IG N I
Sbjct: 526 FQEKAYVEFQDYITKTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIG-NVRIDSV 584
Query: 253 IWHMYK 258
I H+ K
Sbjct: 585 IPHILK 590
Score = 40.8 bits (94), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 427 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHSSLQQDKMSTERRKLLMEHIFKLQE 486
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L ID YEY Y++AI LF
Sbjct: 487 FCNSMVKLCIDGYEYAYLKAIVLF 510
>gi|149742912|ref|XP_001493970.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 isoform 1
[Equus caballus]
Length = 605
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 77/186 (41%), Gaps = 36/186 (19%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 132
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 427 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHSSLQQDKMSTERRKLLMEHIFKLQE 486
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
N L ID YEY Y++AI LF +HP L ++ I
Sbjct: 487 FCNSMVKLCIDGYEYAYLKAIVLFS-------------------PDHPG--LENMEQIEK 525
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
Q + YI YP R ++ L LP L+ + + + EELFF+ +IG N I
Sbjct: 526 FQEKAYVEFQDYITKTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIG-NVRIDSV 584
Query: 253 IWHMYK 258
I H+ K
Sbjct: 585 IPHILK 590
Score = 40.8 bits (94), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 427 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHSSLQQDKMSTERRKLLMEHIFKLQE 486
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L ID YEY Y++AI LF
Sbjct: 487 FCNSMVKLCIDGYEYAYLKAIVLF 510
>gi|281340400|gb|EFB15984.1| hypothetical protein PANDA_007909 [Ailuropoda melanoleuca]
Length = 587
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 77/186 (41%), Gaps = 36/186 (19%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 132
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 409 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHSSLQQDKMSTERRKLLMEHIFKLQE 468
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
N L ID YEY Y++AI LF +HP L ++ I
Sbjct: 469 FCNSMVKLCIDGYEYAYLKAIVLFS-------------------PDHPG--LENMEQIEK 507
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
Q + YI YP R ++ L LP L+ + + + EELFF+ +IG N I
Sbjct: 508 FQEKAYVEFQDYITKTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIG-NVRIDSV 566
Query: 253 IWHMYK 258
I H+ K
Sbjct: 567 IPHILK 572
Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 409 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHSSLQQDKMSTERRKLLMEHIFKLQE 468
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L ID YEY Y++AI LF
Sbjct: 469 FCNSMVKLCIDGYEYAYLKAIVLF 492
>gi|118150918|ref|NP_001071372.1| nuclear receptor subfamily 2 group C member 1 [Bos taurus]
gi|226733406|sp|A0JNE3.1|NR2C1_BOVIN RecName: Full=Nuclear receptor subfamily 2 group C member 1
gi|117306695|gb|AAI26644.1| Nuclear receptor subfamily 2, group C, member 1 [Bos taurus]
Length = 608
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 77/186 (41%), Gaps = 36/186 (19%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 132
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 430 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHSSLQQDKISAERRKLLMEHIFKLQE 489
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
N L ID YEY Y++AI LF +HP L ++ I
Sbjct: 490 FCNSMVKLCIDGYEYAYLKAIVLFS-------------------PDHPG--LENMEQIEK 528
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
Q + YI YP R ++ L LP L+ + + + EELFF+ +IG N I
Sbjct: 529 FQEKAYVEFQDYITKTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIG-NVRIDSV 587
Query: 253 IWHMYK 258
I H+ K
Sbjct: 588 IPHILK 593
Score = 40.8 bits (94), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 430 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHSSLQQDKISAERRKLLMEHIFKLQE 489
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L ID YEY Y++AI LF
Sbjct: 490 FCNSMVKLCIDGYEYAYLKAIVLF 513
>gi|158256074|dbj|BAF84008.1| unnamed protein product [Homo sapiens]
Length = 603
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 77/186 (41%), Gaps = 36/186 (19%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 132
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 425 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQDKMSTERRKLLMEHIFKLQE 484
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
N L ID YEY Y++AI LF +HP L ++ I
Sbjct: 485 FCNSMVKLCIDGYEYAYLKAIVLFS-------------------PDHPS--LENMEQIEK 523
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
Q + YI YP R ++ L LP L+ + + + EELFF+ +IG N I
Sbjct: 524 FQEKAYVEFQDYITKTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIG-NIRIDSV 582
Query: 253 IWHMYK 258
I H+ K
Sbjct: 583 IPHILK 588
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 425 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQDKMSTERRKLLMEHIFKLQE 484
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L ID YEY Y++AI LF
Sbjct: 485 FCNSMVKLCIDGYEYAYLKAIVLF 508
>gi|296487946|tpg|DAA30059.1| TPA: nuclear receptor subfamily 2, group C, member 1 [Bos taurus]
Length = 608
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 77/186 (41%), Gaps = 36/186 (19%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 132
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 430 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHSSLQQDKISAERRKLLMEHIFKLQE 489
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
N L ID YEY Y++AI LF +HP L ++ I
Sbjct: 490 FCNSMVKLCIDGYEYAYLKAIVLFS-------------------PDHPG--LENMEQIEK 528
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
Q + YI YP R ++ L LP L+ + + + EELFF+ +IG N I
Sbjct: 529 FQEKAYVEFQDYITKTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIG-NVRIDSV 587
Query: 253 IWHMYK 258
I H+ K
Sbjct: 588 IPHILK 593
Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 430 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHSSLQQDKISAERRKLLMEHIFKLQE 489
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L ID YEY Y++AI LF
Sbjct: 490 FCNSMVKLCIDGYEYAYLKAIVLF 513
>gi|410965258|ref|XP_003989167.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 [Felis
catus]
Length = 605
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 77/186 (41%), Gaps = 36/186 (19%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 132
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 427 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHGSLQQDKMSTERRKLLMEHIFKLQE 486
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
N L ID YEY Y++AI LF +HP L ++ I
Sbjct: 487 FCNSMVKLCIDGYEYAYLKAIVLFS-------------------PDHPG--LENMEQIEK 525
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
Q + YI YP R ++ L LP L+ + + + EELFF+ +IG N I
Sbjct: 526 FQEKAYVEFQDYITKTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIG-NVRIDSV 584
Query: 253 IWHMYK 258
I H+ K
Sbjct: 585 IPHILK 590
Score = 40.8 bits (94), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 427 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHGSLQQDKMSTERRKLLMEHIFKLQE 486
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L ID YEY Y++AI LF
Sbjct: 487 FCNSMVKLCIDGYEYAYLKAIVLF 510
>gi|126339675|ref|XP_001370429.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-like
[Monodelphis domestica]
Length = 605
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 77/186 (41%), Gaps = 36/186 (19%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 132
L+ W ELF LGLAQ +++ ++ + R I E + + Q
Sbjct: 427 LVKAYWNELFTLGLAQCSQVMNVATILAAFVNRLHSSLQQDKLSTERGKAIMEHIFKLQE 486
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
N L +D YEY Y++AI LF +HP L ++ I
Sbjct: 487 FCNSMVRLCLDGYEYAYLKAIVLFS-------------------PDHPG--LENMGQIEK 525
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
Q + YI YP R ++ L LP L+ + + + EELFF+ +IG N I
Sbjct: 526 FQEKAYMEFQDYITKTYPDDTYRLSRLLLRLPALRLMSATITEELFFKGLIG-NVRIDSV 584
Query: 253 IWHMYK 258
I +++K
Sbjct: 585 IPYIFK 590
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ +++ ++ + R I E + + Q
Sbjct: 427 LVKAYWNELFTLGLAQCSQVMNVATILAAFVNRLHSSLQQDKLSTERGKAIMEHIFKLQE 486
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L +D YEY Y++AI LF
Sbjct: 487 FCNSMVRLCLDGYEYAYLKAIVLF 510
>gi|431905326|gb|ELK10371.1| Nuclear receptor subfamily 2 group C member 1 [Pteropus alecto]
Length = 605
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 77/186 (41%), Gaps = 36/186 (19%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 132
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 427 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHSSLQQDKMSTERRKLLMEHIFKLQE 486
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
N L ID YEY Y++AI LF +HP L ++ I
Sbjct: 487 FCNSMVKLCIDGYEYAYLKAIVLFS-------------------PDHPG--LENMEQIEK 525
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
Q + YI YP R ++ L LP L+ + + + EELFF+ +IG N I
Sbjct: 526 FQEKAYVEFQDYITKTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIG-NVRIDSV 584
Query: 253 IWHMYK 258
I H+ K
Sbjct: 585 IPHILK 590
Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 427 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHSSLQQDKMSTERRKLLMEHIFKLQE 486
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L ID YEY Y++AI LF
Sbjct: 487 FCNSMVKLCIDGYEYAYLKAIVLF 510
>gi|426224304|ref|XP_004006312.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 [Ovis
aries]
Length = 608
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 77/186 (41%), Gaps = 36/186 (19%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 132
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 430 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHSSLQQDKIPAERRKLLMEHIFKLQE 489
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
N L ID YEY Y++AI LF +HP L ++ I
Sbjct: 490 FCNSMVKLCIDGYEYAYLKAIVLFS-------------------PDHPG--LENMEQIEK 528
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
Q + YI YP R ++ L LP L+ + + + EELFF+ +IG N I
Sbjct: 529 FQEKAYVEFQDYITKTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIG-NVRIDSV 587
Query: 253 IWHMYK 258
I H+ K
Sbjct: 588 IPHILK 593
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 430 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHSSLQQDKIPAERRKLLMEHIFKLQE 489
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L ID YEY Y++AI LF
Sbjct: 490 FCNSMVKLCIDGYEYAYLKAIVLF 513
>gi|387017404|gb|AFJ50820.1| Nuclear receptor subfamily 2 group C member 1-A-like [Crotalus
adamanteus]
Length = 640
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 72/173 (41%), Gaps = 35/173 (20%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 132
L+ W ELF LGLAQ +++ ++ + R + E + + Q
Sbjct: 462 LVKACWNELFTLGLAQCSQVMNVATILTAFVNHLHNSLQQDKLSADRGKLVMEHIFKLQE 521
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
N L +D YEY Y++AI LF +HP L +V+ I
Sbjct: 522 FCNSMVKLCLDGYEYAYLKAIVLFS-------------------PDHPG--LENVVQIEN 560
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
Q + Y+ VYP R ++ L LP L+ + + + EELFF +IG+
Sbjct: 561 CQEKAYMEFQDYVMKVYPDDTYRLSRLLLRLPALRLMSAAITEELFFAGLIGN 613
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ +++ ++ + R + E + + Q
Sbjct: 462 LVKACWNELFTLGLAQCSQVMNVATILTAFVNHLHNSLQQDKLSADRGKLVMEHIFKLQE 521
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L +D YEY Y++AI LF
Sbjct: 522 FCNSMVKLCLDGYEYAYLKAIVLF 545
>gi|46048923|ref|NP_989924.1| nuclear receptor subfamily 0 group B member 1 [Gallus gallus]
gi|6625782|gb|AAF19395.1|AF202991_1 adrenal hyoplasia protein DAX1 [Gallus gallus]
Length = 263
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 70/177 (39%), Gaps = 39/177 (22%)
Query: 86 LLLAESWRELFILGLAQ------------------YLPSLDLGELVESCKSRHVDIEEEV 127
+L+ W L +LGLAQ L + LGE + +H E+
Sbjct: 92 VLVRSCWAPLLVLGLAQERVHLETVESAEPSMLQRILTTRRLGEHAPAPGRQHPPSAGEI 151
Query: 128 IRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDV 187
+ L + L+I EY Y++ LF + L+
Sbjct: 152 QAIKGFLAKCWSLDISTKEYAYLKGTVLFNPDLPG---------------------LQCT 190
Query: 188 IAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
I +Q Q LN+++ ++ RF K+ ++L L+SI + V+ ELFFR IIG
Sbjct: 191 QYIEGLQKEAQEALNEHVRLIHRGDQARFAKLNVVLSLLRSINANVIAELFFRPIIG 247
>gi|444720729|gb|ELW61505.1| Nuclear receptor subfamily 2 group C member 1 [Tupaia chinensis]
Length = 606
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 77/186 (41%), Gaps = 36/186 (19%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 132
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 428 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHSSLQQDKMSTERRKLLMEHIFKLQE 487
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
N L ID YEY Y++AI LF +HP L ++ I
Sbjct: 488 FCNSMVKLCIDGYEYAYLKAIVLFS-------------------PDHPG--LENMEQIEK 526
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
Q + YI YP R ++ L LP L+ + + + EELFF+ +IG N I
Sbjct: 527 FQEKAYVEFQDYITKTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIG-NVRIDSV 585
Query: 253 IWHMYK 258
I H+ K
Sbjct: 586 IPHILK 591
Score = 40.8 bits (94), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 428 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHSSLQQDKMSTERRKLLMEHIFKLQE 487
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L ID YEY Y++AI LF
Sbjct: 488 FCNSMVKLCIDGYEYAYLKAIVLF 511
>gi|426373748|ref|XP_004053750.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 [Gorilla
gorilla gorilla]
Length = 582
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 77/186 (41%), Gaps = 36/186 (19%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 132
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 404 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQDKMSTERRKLLMEHIFKLQE 463
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
N L ID YEY Y++AI LF +HP L ++ I
Sbjct: 464 FCNSMVKLCIDGYEYAYLKAIVLFS-------------------PDHPG--LENMEQIEK 502
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
Q + YI YP R ++ L LP L+ + + + EELFF+ +IG N I
Sbjct: 503 FQEKAYVEFQDYITKTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIG-NIRIDSV 561
Query: 253 IWHMYK 258
I H+ K
Sbjct: 562 IPHILK 567
Score = 40.8 bits (94), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 404 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQDKMSTERRKLLMEHIFKLQE 463
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L ID YEY Y++AI LF
Sbjct: 464 FCNSMVKLCIDGYEYAYLKAIVLF 487
>gi|197098516|ref|NP_001127276.1| nuclear receptor subfamily 2 group C member 1 [Pongo abelii]
gi|75061946|sp|Q5RCZ5.1|NR2C1_PONAB RecName: Full=Nuclear receptor subfamily 2 group C member 1
gi|55727212|emb|CAH90362.1| hypothetical protein [Pongo abelii]
Length = 601
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 77/186 (41%), Gaps = 36/186 (19%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 132
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 426 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQDKMSTERRKLLMEHIFKLQE 485
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
N L ID YEY Y++AI LF +HP L ++ I
Sbjct: 486 FCNSMVKLCIDGYEYAYLKAIVLFS-------------------PDHPG--LENMEQIEK 524
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
Q + YI YP R ++ L LP L+ + + + EELFF+ +IG N I
Sbjct: 525 FQEKAYVEFQDYITKTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIG-NIRIDSV 583
Query: 253 IWHMYK 258
I H+ K
Sbjct: 584 IPHILK 589
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 426 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQDKMSTERRKLLMEHIFKLQE 485
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L ID YEY Y++AI LF
Sbjct: 486 FCNSMVKLCIDGYEYAYLKAIVLF 509
>gi|332221160|ref|XP_003259729.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 [Nomascus
leucogenys]
Length = 604
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 77/186 (41%), Gaps = 36/186 (19%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 132
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 426 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHSSLQQDKMSTERRKLLMEHIFKLQE 485
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
N L ID YEY Y++AI LF +HP L ++ I
Sbjct: 486 FCNSMVKLCIDGYEYAYLKAIVLFS-------------------PDHPG--LENMEQIEK 524
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
Q + YI YP R ++ L LP L+ + + + EELFF+ +IG N I
Sbjct: 525 FQEKAYVEFQDYITKTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIG-NIRIDSV 583
Query: 253 IWHMYK 258
I H+ K
Sbjct: 584 IPHILK 589
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 426 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHSSLQQDKMSTERRKLLMEHIFKLQE 485
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L ID YEY Y++AI LF
Sbjct: 486 FCNSMVKLCIDGYEYAYLKAIVLF 509
>gi|8248247|gb|AAF74116.1|AF225975_1 Tc-tailless [Tribolium castaneum]
Length = 302
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 10/94 (10%)
Query: 65 YIRAITLFKTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESC------KS 118
++R+I AFT LLL ESW +LF+LG AQ+LP +D LVE+C
Sbjct: 213 WVRSIP----AFTCLPLSDQLLLLEESWLDLFVLGAAQFLPLMDFSVLVEACGVLQQEPH 268
Query: 119 RHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRA 152
R +EV FQ L + +D +E+ +RA
Sbjct: 269 RRDAFLKEVADFQETLKKISQFQLDAHEFACLRA 302
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 6 ESWRELFILGLAQYLPSLDLGELVESC------KSRHVDIEEEVIRFQSVLNEFKVLNID 59
ESW +LF+LG AQ+LP +D LVE+C R +EV FQ L + +D
Sbjct: 234 ESWLDLFVLGAAQFLPLMDFSVLVEACGVLQQEPHRRDAFLKEVADFQETLKKISQFQLD 293
Query: 60 PYEYDYIRA 68
+E+ +RA
Sbjct: 294 AHEFACLRA 302
>gi|339887|gb|AAA36761.1| steroid receptor TR2-11 [Homo sapiens]
Length = 603
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 77/186 (41%), Gaps = 36/186 (19%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 132
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 425 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQDKMSTERRKLLMEHIFKLQE 484
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
N L ID YEY Y++AI LF +HP L ++ I
Sbjct: 485 FCNSMVKLCIDGYEYAYLKAIVLFS-------------------PDHPS--LENMELIEK 523
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
Q + YI YP R ++ L LP L+ + + + EELFF+ +IG N I
Sbjct: 524 FQEKAYVEFQDYITKTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIG-NIRIDSV 582
Query: 253 IWHMYK 258
I H+ K
Sbjct: 583 IPHILK 588
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 425 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQDKMSTERRKLLMEHIFKLQE 484
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L ID YEY Y++AI LF
Sbjct: 485 FCNSMVKLCIDGYEYAYLKAIVLF 508
>gi|402887264|ref|XP_003907017.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
C member 1 [Papio anubis]
gi|380816090|gb|AFE79919.1| nuclear receptor subfamily 2 group C member 1 isoform a [Macaca
mulatta]
gi|383421223|gb|AFH33825.1| nuclear receptor subfamily 2 group C member 1 isoform a [Macaca
mulatta]
gi|384949168|gb|AFI38189.1| nuclear receptor subfamily 2 group C member 1 isoform a [Macaca
mulatta]
Length = 604
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 77/186 (41%), Gaps = 36/186 (19%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 132
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 426 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQDKMSTERRKLLMEHIFKLQE 485
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
N L ID YEY Y++AI LF +HP L ++ I
Sbjct: 486 FCNSMVKLCIDGYEYAYLKAIVLFS-------------------PDHPG--LENMEQIEK 524
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
Q + YI YP R ++ L LP L+ + + + EELFF+ +IG N I
Sbjct: 525 FQEKAYVEFQDYITKTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIG-NIRIDSV 583
Query: 253 IWHMYK 258
I H+ K
Sbjct: 584 IPHILK 589
Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 426 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQDKMSTERRKLLMEHIFKLQE 485
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L ID YEY Y++AI LF
Sbjct: 486 FCNSMVKLCIDGYEYAYLKAIVLF 509
>gi|332840360|ref|XP_001137621.2| PREDICTED: nuclear receptor subfamily 2 group C member 1 isoform 1
[Pan troglodytes]
gi|397473630|ref|XP_003808309.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 isoform 2
[Pan paniscus]
gi|410209720|gb|JAA02079.1| nuclear receptor subfamily 2, group C, member 1 [Pan troglodytes]
gi|410255878|gb|JAA15906.1| nuclear receptor subfamily 2, group C, member 1 [Pan troglodytes]
gi|410298356|gb|JAA27778.1| nuclear receptor subfamily 2, group C, member 1 [Pan troglodytes]
gi|410342159|gb|JAA40026.1| nuclear receptor subfamily 2, group C, member 1 [Pan troglodytes]
Length = 604
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 77/186 (41%), Gaps = 36/186 (19%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 132
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 426 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQDKMSTERRKLLMEHIFKLQE 485
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
N L ID YEY Y++AI LF +HP L ++ I
Sbjct: 486 FCNSMVKLCIDGYEYAYLKAIVLFS-------------------PDHPG--LENMEQIEK 524
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
Q + YI YP R ++ L LP L+ + + + EELFF+ +IG N I
Sbjct: 525 FQEKAYVEFQDYITKTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIG-NIRIDSV 583
Query: 253 IWHMYK 258
I H+ K
Sbjct: 584 IPHILK 589
Score = 40.8 bits (94), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 426 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQDKMSTERRKLLMEHIFKLQE 485
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L ID YEY Y++AI LF
Sbjct: 486 FCNSMVKLCIDGYEYAYLKAIVLF 509
>gi|75066579|sp|Q95K90.1|NR2C1_MACFA RecName: Full=Nuclear receptor subfamily 2 group C member 1
gi|14388521|dbj|BAB60786.1| hypothetical protein [Macaca fascicularis]
gi|355762671|gb|EHH62044.1| Orphan nuclear receptor TR2 [Macaca fascicularis]
Length = 603
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 77/186 (41%), Gaps = 36/186 (19%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 132
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 425 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQDKMSTERRKLLMEHIFKLQE 484
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
N L ID YEY Y++AI LF +HP L ++ I
Sbjct: 485 FCNSMVKLCIDGYEYAYLKAIVLFS-------------------PDHPG--LENMEQIEK 523
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
Q + YI YP R ++ L LP L+ + + + EELFF+ +IG N I
Sbjct: 524 FQEKAYVEFQDYITKTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIG-NIRIDSV 582
Query: 253 IWHMYK 258
I H+ K
Sbjct: 583 IPHILK 588
Score = 40.8 bits (94), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 425 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQDKMSTERRKLLMEHIFKLQE 484
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L ID YEY Y++AI LF
Sbjct: 485 FCNSMVKLCIDGYEYAYLKAIVLF 508
>gi|343958546|dbj|BAK63128.1| orphan nuclear receptor TR2 [Pan troglodytes]
Length = 604
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 77/186 (41%), Gaps = 36/186 (19%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 132
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 426 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQDKMSTERRKLLMERIFKLQE 485
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
N L ID YEY Y++AI LF +HP L ++ I
Sbjct: 486 FCNSMVKLCIDGYEYAYLKAIVLFS-------------------PDHPG--LENMEQIEK 524
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
Q + YI YP R ++ L LP L+ + + + EELFF+ +IG N I
Sbjct: 525 FQEKAYVEFQDYITKTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIG-NIRIDSV 583
Query: 253 IWHMYK 258
I H+ K
Sbjct: 584 IPHILK 589
Score = 40.8 bits (94), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 426 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQDKMSTERRKLLMERIFKLQE 485
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L ID YEY Y++AI LF
Sbjct: 486 FCNSMVKLCIDGYEYAYLKAIVLF 509
>gi|395820061|ref|XP_003783394.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 [Otolemur
garnettii]
Length = 604
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 77/186 (41%), Gaps = 36/186 (19%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES-CKSRHVDIE-------------EEVIRFQS 132
L+ W ELF LGLAQ +++ ++ + H ++ E + + Q
Sbjct: 426 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHSSLQQDKMSTEKRKLLMEHIFKLQE 485
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
N L ID YEY Y++AI LF +HP L ++ I
Sbjct: 486 FCNSMVKLCIDGYEYAYLKAIVLFS-------------------PDHPG--LENMEQIEK 524
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
Q + YI YP R ++ L LP L+ + + + EELFF+ +IG N I
Sbjct: 525 FQEKAYVEFQDYITKTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIG-NVRIDSV 583
Query: 253 IWHMYK 258
I H+ K
Sbjct: 584 IPHILK 589
Score = 40.4 bits (93), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES-CKSRHVDIE-------------EEVIRFQS 48
L+ W ELF LGLAQ +++ ++ + H ++ E + + Q
Sbjct: 426 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHSSLQQDKMSTEKRKLLMEHIFKLQE 485
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L ID YEY Y++AI LF
Sbjct: 486 FCNSMVKLCIDGYEYAYLKAIVLF 509
>gi|62738907|pdb|1Z5X|U Chain U, Hemipteran Ecdysone Receptor Ligand-Binding Domain
Complexed With Ponasterone A
Length = 262
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 73/179 (40%), Gaps = 31/179 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I G + S+ G ++ + H + + F VL E +
Sbjct: 100 ILLKSGWNELLIAGFSHRSMSVKDGIMLATGLVVHRNCAHQAGVGAIFDRVLTELVAKMR 159
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHT 197
+ +D E +R+I LF +PE+ L+ + ++
Sbjct: 160 EMKMDKTELGCLRSIVLF----------------------NPEAKGLKSTQQVENLREKV 197
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L +Y YP Q RF K+ L LP L+SI LE LFF ++G NT+I + M
Sbjct: 198 YAILEEYCRQTYPDQSGRFAKLLLRLPALRSIGLKCLEHLFFFKLVG-NTSIDSFLLSM 255
>gi|397494017|ref|XP_003817891.1| PREDICTED: nuclear receptor subfamily 2 group F member 6, partial
[Pan paniscus]
Length = 429
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 79/179 (44%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEE--------VIRFQSVLNEFK 138
LL SW ELF+L AQ L L+ + + E +++
Sbjct: 259 LLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAERXXXXXXXXXXXXEQVDKLG 318
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L +D EY ++AI LF P++C L D + ++Q
Sbjct: 319 RLQVDSAEYGCLKAIALFT----------------------PDACGLSDPAHVESLQEKA 356
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+ I M
Sbjct: 357 QVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIETLIRDM 414
>gi|124431273|gb|ABN11285.1| ultraspiracle protein [Bemisia tabaci]
Length = 251
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I G + S+ G ++ + H + + F VL E +
Sbjct: 89 ILLKSGWNELLIAGFSHRSMSVKDGIMLATGLVVHRNCAHQAGVGAIFDRVLTELVAKMR 148
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +R+I LF E K +S+ + E+ V AI
Sbjct: 149 EMKMDKTELGCLRSIVLFNP----EAKGLKST-------QQVENLREKVYAI-------- 189
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L +Y YP Q RF K+ L LP L+SI LE LFF ++G NT+I + M
Sbjct: 190 --LEEYCRQTYPDQSGRFAKLLLRLPALRSIGLKCLEHLFFFKLVG-NTSIDSFLLSM 244
>gi|301087323|gb|ADK60866.1| retinoid X receptor [Haliotis diversicolor]
Length = 441
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 74/187 (39%), Gaps = 41/187 (21%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I G + ++ G L+ + H + F VL E +
Sbjct: 278 ILLRAGWNELLIAGFSHRSIAVKDGILLATGLHVHRSSAHQAGVGTIFDRVLTELVAKMR 337
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF D ++A+Q Q
Sbjct: 338 EMKMDKTELGCLRAIVLFNP---------------------------DAKGLSAVQEVEQ 370
Query: 199 I------FLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
+ L +Y T YP +P RF K+ L LP L+SI LE LFF +IG +T I
Sbjct: 371 LREKVYASLEEYCKTRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTF 429
Query: 253 IWHMYKN 259
+ M +N
Sbjct: 430 LMEMLEN 436
>gi|5631312|dbj|BAA82618.1| retinoid X receptor [Polyandrocarpa misakiensis]
Length = 363
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 75/180 (41%), Gaps = 33/180 (18%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHV---DIEEEVIR--FQSVLNE---- 136
+LL W EL I + S+D+ + + HV + + F VL E
Sbjct: 173 ILLRAGWNELLIASFSHR--SIDVKDSILLASGLHVHRHSAHQAGVGPIFDRVLTELVSK 230
Query: 137 FKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGH 196
+ + +D E +RAI LF +++ L D I +++
Sbjct: 231 MRDMMMDKTELGCLRAIVLFNPDVKN---------------------LSDSAHIESLREK 269
Query: 197 TQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y + YP QP RF K+ L LP L+SI LE LFF +IG +T I K + +M
Sbjct: 270 VYASLEAYCRSKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDKFLMNM 328
>gi|419590185|dbj|BAM66778.1| retinoid X receptor [Polyandrocarpa misakiensis]
Length = 539
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 75/180 (41%), Gaps = 33/180 (18%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHV---DIEEEVIR--FQSVLNE---- 136
+LL W EL I + S+D+ + + HV + + F VL E
Sbjct: 349 ILLRAGWNELLIASFSHR--SIDVKDSILLASGLHVHRHSAHQAGVGPIFDRVLTELVSK 406
Query: 137 FKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGH 196
+ + +D E +RAI LF +++ L D I +++
Sbjct: 407 MRDMMMDKTELGCLRAIVLFNPDVKN---------------------LSDSAHIESLREK 445
Query: 197 TQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y + YP QP RF K+ L LP L+SI LE LFF +IG +T I K + +M
Sbjct: 446 VYASLEAYCRSKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDKFLMNM 504
>gi|47220825|emb|CAG00032.1| unnamed protein product [Tetraodon nigroviridis]
Length = 258
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 67/173 (38%), Gaps = 35/173 (20%)
Query: 87 LLAESWRELFILGLAQ--------------YLPSLDLGELVESCKSRHVDIEEEVIRFQS 132
LL W LFILGLAQ L + L R V + +S
Sbjct: 93 LLRSGWAPLFILGLAQERVDFEVTDSPADSMLKRILLNRQEGPGPEREQPTMAGVCKLRS 152
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
L +F L++ P EY Y++ +F + D L+ + + +
Sbjct: 153 CLKKFWSLDLSPKEYAYLKGTAIFNPDVPD---------------------LKAGVFVES 191
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
+Q Q L + + ++ RF +I L L+SI ++ ELFFR +IG
Sbjct: 192 LQQEAQHALREVVLLLHRGDGERFARILLTASVLQSITPGLISELFFRPVIGQ 244
>gi|344267618|ref|XP_003405663.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-like
[Loxodonta africana]
Length = 596
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 36/186 (19%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES-CKSRHVDIEEE-------------VIRFQS 132
L+ W ELF LGLAQ +++ ++ + H ++++ + + Q
Sbjct: 418 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHSSLQQDKMSTERRKLLMDHIFKLQE 477
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
N L ID YEY Y++AI LF +HP L ++ I
Sbjct: 478 FCNSMVKLCIDGYEYAYLKAIVLFS-------------------PDHPG--LENMEQIEK 516
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
Q + YI YP R ++ L LP L+ + + + EELFF+ +IG N I
Sbjct: 517 FQEKAYVEFQDYITKTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIG-NVRIDSV 575
Query: 253 IWHMYK 258
I H+ K
Sbjct: 576 IPHILK 581
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES-CKSRHVDIEEE-------------VIRFQS 48
L+ W ELF LGLAQ +++ ++ + H ++++ + + Q
Sbjct: 418 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHSSLQQDKMSTERRKLLMDHIFKLQE 477
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L ID YEY Y++AI LF
Sbjct: 478 FCNSMVKLCIDGYEYAYLKAIVLF 501
>gi|410905133|ref|XP_003966046.1| PREDICTED: nuclear receptor subfamily 0 group B member 2-like
[Takifugu rubripes]
Length = 258
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 35/173 (20%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGE----------LVESCKSRHVDIEEE----VIRFQS 132
LL W LFILGLAQ ++ + L+ +S + E+ V + +S
Sbjct: 93 LLRSCWAPLFILGLAQERVDFEVTDTPADSMLKRILLNRQESPRAEKEQPTLAGVSKLRS 152
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
L +F L++ P EY Y++ +F + D L+ + + +
Sbjct: 153 CLKKFWSLDLSPKEYAYLKGTAIFNPDVPD---------------------LKAALFVES 191
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
+Q Q L + + ++ RF +I L L+SI ++ ELFFR +IG
Sbjct: 192 LQQEAQHALREVVLLLHQEDHERFARILLTASMLQSITPSLISELFFRPVIGQ 244
>gi|195119854|ref|XP_002004444.1| GI19610 [Drosophila mojavensis]
gi|193909512|gb|EDW08379.1| GI19610 [Drosophila mojavensis]
Length = 589
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 86/191 (45%), Gaps = 45/191 (23%)
Query: 86 LLLAESWRELFILGLAQYLPSLD-----LGELVESCKS--------RHVDIEE---EVIR 129
+LL ESW ELF+L Q+ LD L + E C + V EE +V
Sbjct: 427 ILLEESWSELFLLNAIQWCIPLDPTGCALFSVAEHCNNLENNANTDNCVSKEELAADVRT 486
Query: 130 FQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVI 188
+ ++K + +DP E+ ++AI LF+ PE+ L+D
Sbjct: 487 LHEIFCKYKAVLVDPAEFACLKAIVLFR----------------------PETRGLKDPA 524
Query: 189 AIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTT 248
I +Q + T + +Q RF ++ L+LP L+ I S +E +FF+ IG NT
Sbjct: 525 QIENLQDQAH-----HTKTQFAAQIARFGRLLLMLPLLRMINSHKIESIFFQRTIG-NTP 578
Query: 249 IKKTIWHMYKN 259
++K + MYKN
Sbjct: 579 MEKVLCDMYKN 589
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 16/88 (18%)
Query: 2 LLLAESWRELFILGLAQYLPSLD-----LGELVESCKS--------RHVDIEE---EVIR 45
+LL ESW ELF+L Q+ LD L + E C + V EE +V
Sbjct: 427 ILLEESWSELFLLNAIQWCIPLDPTGCALFSVAEHCNNLENNANTDNCVSKEELAADVRT 486
Query: 46 FQSVLNEFKVLNIDPYEYDYIRAITLFK 73
+ ++K + +DP E+ ++AI LF+
Sbjct: 487 LHEIFCKYKAVLVDPAEFACLKAIVLFR 514
>gi|5881250|gb|AAD55095.1|AF180295_1 DAX1 homolog, partial [Alligator mississippiensis]
Length = 245
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 69/166 (41%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHV-------DIEEEVIRFQSVLNEFK 138
+L+ +W L +LGLAQ +L E + + + ++ VL +
Sbjct: 85 VLVRAAWAPLLVLGLAQDGVALPAHEAAQPSMLQRILTARPPPPPAADLQALHGVLAKCW 144
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
L+I P EY Y++ LF + L+ I +Q Q
Sbjct: 145 SLDIGPKEYAYLKGAVLFNPDLPG---------------------LQCTQYIQGLQREAQ 183
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
LN+++ ++ RF K+ + L L+SI + V+ ELFFR IIG
Sbjct: 184 QALNEHVRLIHRGDQARFAKLNIALSLLRSINANVIAELFFRPIIG 229
>gi|74147214|dbj|BAE27509.1| unnamed protein product [Mus musculus]
Length = 590
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 78/186 (41%), Gaps = 36/186 (19%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 132
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 412 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHSSLQQDKMSPERRKSLMEHIFKLQE 471
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
N L ID +EY Y++AI LF +HP L ++ I
Sbjct: 472 FCNSMVKLCIDGHEYAYLKAIVLFS-------------------PDHPG--LENMELIER 510
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
Q + YI YP+ R ++ L LP L+ + + + EELFF+ +IG N I
Sbjct: 511 FQEKAYVEFQDYITRTYPNDTYRLSRLLLRLPALRLMNATITEELFFKGLIG-NVRIDSV 569
Query: 253 IWHMYK 258
I H+ K
Sbjct: 570 IPHILK 575
Score = 40.0 bits (92), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 412 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHSSLQQDKMSPERRKSLMEHIFKLQE 471
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L ID +EY Y++AI LF
Sbjct: 472 FCNSMVKLCIDGHEYAYLKAIVLF 495
>gi|1173533|gb|AAC53253.1| orphan receptor [Mus musculus]
gi|1537010|gb|AAC52787.1| orphan receptor [Mus musculus]
Length = 590
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 77/186 (41%), Gaps = 36/186 (19%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 132
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 412 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHSSLQQDKMSAERRKSLMEHIFKLQE 471
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
N L ID +EY Y++AI LF +HP L ++ I
Sbjct: 472 FCNSMVKLCIDGHEYAYLKAIVLFS-------------------PDHPG--LENMELIER 510
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
Q + YI YP R ++ L LP L+ + + + EELFF+ +IG N I
Sbjct: 511 FQEKAYVEFQDYITRTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIG-NVRIDSV 569
Query: 253 IWHMYK 258
I H+ K
Sbjct: 570 IPHILK 575
Score = 40.4 bits (93), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 412 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHSSLQQDKMSAERRKSLMEHIFKLQE 471
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L ID +EY Y++AI LF
Sbjct: 472 FCNSMVKLCIDGHEYAYLKAIVLF 495
>gi|189095956|pdb|2Q60|A Chain A, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
gi|189095957|pdb|2Q60|B Chain B, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
gi|189095958|pdb|2Q60|C Chain C, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
gi|189095959|pdb|2Q60|D Chain D, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
Length = 258
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 77/180 (42%), Gaps = 33/180 (18%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHV---DIEEEVIR--FQSVLNEF--- 137
+LL W EL I + S+D+ + + HV + + F VL E
Sbjct: 94 ILLRAGWNELLIASFSHR--SIDVKDSILLASGLHVHRHSAHQAGVGPIFDRVLTELVSK 151
Query: 138 -KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGH 196
+ + +D E +RA+ LF +++ SD S H ES V A
Sbjct: 152 MRDMMMDKTELGCLRAVVLFNPDVKN---------PSD--SAHIESLREKVYA------- 193
Query: 197 TQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y + YP QP RF K+ L LP L+SI LE LFF +IG +T I K + +M
Sbjct: 194 ---SLEAYCRSKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDKFLMNM 249
>gi|171846245|ref|NP_035759.3| nuclear receptor subfamily 2 group C member 1 [Mus musculus]
gi|341942228|sp|Q505F1.3|NR2C1_MOUSE RecName: Full=Nuclear receptor subfamily 2 group C member 1;
AltName: Full=Orphan nuclear receptor TR2; AltName:
Full=Testicular receptor 2; Short=mTR2
gi|63101502|gb|AAH94580.1| Nr2c1 protein [Mus musculus]
gi|74143559|dbj|BAE28842.1| unnamed protein product [Mus musculus]
gi|111598870|gb|AAH90662.1| Nr2c1 protein [Mus musculus]
Length = 590
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 77/186 (41%), Gaps = 36/186 (19%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 132
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 412 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHSSLQQDKMSPERRKSLMEHIFKLQE 471
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
N L ID +EY Y++AI LF +HP L ++ I
Sbjct: 472 FCNSMVKLCIDGHEYAYLKAIVLFS-------------------PDHPG--LENMELIER 510
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
Q + YI YP R ++ L LP L+ + + + EELFF+ +IG N I
Sbjct: 511 FQEKAYVEFQDYITRTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIG-NVRIDSV 569
Query: 253 IWHMYK 258
I H+ K
Sbjct: 570 IPHILK 575
Score = 40.0 bits (92), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 412 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHSSLQQDKMSPERRKSLMEHIFKLQE 471
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L ID +EY Y++AI LF
Sbjct: 472 FCNSMVKLCIDGHEYAYLKAIVLF 495
>gi|1890579|emb|CAA72244.1| orphan receptor [Mus musculus]
Length = 590
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 77/186 (41%), Gaps = 36/186 (19%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 132
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 412 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHSSLQQDKMSPERRKSLMEHIFKLQE 471
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
N L ID +EY Y++AI LF +HP L ++ I
Sbjct: 472 FCNSMVKLCIDGHEYAYLKAIVLFS-------------------PDHPG--LENMELIER 510
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
Q + YI YP R ++ L LP L+ + + + EELFF+ +IG N I
Sbjct: 511 FQEKAYVEFQDYITRTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIG-NVRIDSV 569
Query: 253 IWHMYK 258
I H+ K
Sbjct: 570 IPHILK 575
Score = 40.0 bits (92), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 412 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHSSLQQDKMSPERRKSLMEHIFKLQE 471
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L ID +EY Y++AI LF
Sbjct: 472 FCNSMVKLCIDGHEYAYLKAIVLF 495
>gi|16905398|gb|AAL31315.1|L26957_1 orphan receptor [Mus musculus]
gi|1049076|gb|AAC29502.1| TR2 [Mus musculus]
Length = 590
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 77/186 (41%), Gaps = 36/186 (19%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 132
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 412 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHSSLQQDKMSPERRKSLMEHIFKLQE 471
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
N L ID +EY Y++AI LF +HP L ++ I
Sbjct: 472 FCNSMVKLCIDGHEYAYLKAIVLFS-------------------PDHPG--LENMELIER 510
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
Q + YI YP R ++ L LP L+ + + + EELFF+ +IG N I
Sbjct: 511 FQEKAYVEFQDYITRTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIG-NVRIDSV 569
Query: 253 IWHMYK 258
I H+ K
Sbjct: 570 IPHILK 575
Score = 40.0 bits (92), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 412 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHSSLQQDKMSPERRKSLMEHIFKLQE 471
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L ID +EY Y++AI LF
Sbjct: 472 FCNSMVKLCIDGHEYAYLKAIVLF 495
>gi|195486253|ref|XP_002091427.1| GE13645 [Drosophila yakuba]
gi|194177528|gb|EDW91139.1| GE13645 [Drosophila yakuba]
Length = 654
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 85/191 (44%), Gaps = 45/191 (23%)
Query: 86 LLLAESWRELFILGLAQYLPSLD-----LGELVESCK-----------SRHVDIEEEVIR 129
+LL ESW ELF+L Q+ LD L + E C + ++ +V
Sbjct: 492 ILLEESWSELFLLNAIQWCIPLDPTGCALFSVAEHCNNLENNANGDTCTTKEELAADVRT 551
Query: 130 FQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVI 188
+ ++K + +DP E+ ++AI LF+ PE+ L+D
Sbjct: 552 LHEIFCKYKAVLVDPAEFACLKAIVLFR----------------------PETRGLKDPA 589
Query: 189 AIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTT 248
I +Q + T + +Q RF ++ L+LP L+ I S +E ++F+ IG NT
Sbjct: 590 QIENLQDQAH-----HTKTQFTAQIARFGRLLLMLPLLRIISSHKIESIYFQRTIG-NTP 643
Query: 249 IKKTIWHMYKN 259
++K + MYKN
Sbjct: 644 MEKVLCDMYKN 654
Score = 37.4 bits (85), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 16/88 (18%)
Query: 2 LLLAESWRELFILGLAQYLPSLD-----LGELVESCK-----------SRHVDIEEEVIR 45
+LL ESW ELF+L Q+ LD L + E C + ++ +V
Sbjct: 492 ILLEESWSELFLLNAIQWCIPLDPTGCALFSVAEHCNNLENNANGDTCTTKEELAADVRT 551
Query: 46 FQSVLNEFKVLNIDPYEYDYIRAITLFK 73
+ ++K + +DP E+ ++AI LF+
Sbjct: 552 LHEIFCKYKAVLVDPAEFACLKAIVLFR 579
>gi|348571110|ref|XP_003471339.1| PREDICTED: nuclear receptor subfamily 0 group B member 2-like
[Cavia porcellus]
Length = 258
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 65/177 (36%), Gaps = 40/177 (22%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEE-------------------V 127
LL W LF+LGLAQ + ++ E + + +EE V
Sbjct: 88 LLQRCWGPLFLLGLAQDTVTFEVAEAPVPSILKKILLEEPSSSAGSAQLPDRPQPSLAAV 147
Query: 128 IRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDV 187
Q L F L + P EY Y++ LF + S H
Sbjct: 148 QWLQCCLESFWSLELGPKEYAYLKGTILFNPDVPGL-----------HASAH-------- 188
Query: 188 IAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
I +Q L + + YP+ R ++ L LKSIP +L +LFFR IIG
Sbjct: 189 --IGRLQQEAHWALCEVLEPWYPAGQGRLARVLLTASTLKSIPPSLLGDLFFRPIIG 243
>gi|365176244|gb|AEW68002.1| retinoid X receptor [Halocynthia roretzi]
Length = 453
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 74/180 (41%), Gaps = 33/180 (18%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHV---DIEEEVIR--FQSVLNE---- 136
+LL W EL I + S+D+ + + HV + + F VL E
Sbjct: 260 ILLRAGWNELLIASFSHR--SIDVKDSILLASGLHVHRHSAHQAGVGPIFDRVLTELVSK 317
Query: 137 FKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGH 196
+ + +D E +RAI LF +++ L D I +++
Sbjct: 318 MRDMMMDKTELGCLRAIVLFNPDVKN---------------------LSDPAHIESLREK 356
Query: 197 TQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y + YP QP RF K+ L LP L+SI LE LFF +IG +T I K + M
Sbjct: 357 VYASLEAYCRSKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDKFLMDM 415
>gi|224094384|ref|XP_002188160.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 isoform 2
[Taeniopygia guttata]
Length = 563
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 71/173 (41%), Gaps = 35/173 (20%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 132
L+ W ELF LGLAQ +++ ++ + R + E V + Q
Sbjct: 385 LVKACWNELFTLGLAQCSQIMNVATILAAFVNHLQGSLQQDKLPTDRGRLVMEHVFKLQE 444
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
N L +D YEY Y++AI LF +HP L +V+ I
Sbjct: 445 FCNSMVKLCLDGYEYAYLKAIVLFS-------------------PDHPG--LENVVQIEK 483
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
Q + Y+ YP R ++ L LP L+ + + + EELFF +IG+
Sbjct: 484 FQEKAYMEFQDYVTKAYPDDTYRLSRLLLRLPALRLMSAAITEELFFAGLIGN 536
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ +++ ++ + R + E V + Q
Sbjct: 385 LVKACWNELFTLGLAQCSQIMNVATILAAFVNHLQGSLQQDKLPTDRGRLVMEHVFKLQE 444
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L +D YEY Y++AI LF
Sbjct: 445 FCNSMVKLCLDGYEYAYLKAIVLF 468
>gi|326911680|ref|XP_003202184.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-like
[Meleagris gallopavo]
Length = 562
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 71/173 (41%), Gaps = 35/173 (20%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 132
L+ W ELF LGLAQ +++ ++ + R + E + + Q
Sbjct: 384 LVKACWNELFTLGLAQCSQVMNVATILAAFVNHLHDSLQQDKLPTDRGKLVMEHIFKLQE 443
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
N L +D YEY Y++AI LF +HP L +V+ I
Sbjct: 444 FCNSMVKLCLDGYEYAYLKAIVLFS-------------------PDHPG--LENVVQIEK 482
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
Q + Y+ YP R ++ L LP L+ + + + EELFF +IG+
Sbjct: 483 FQEKAYMEFQDYVTKAYPDDTYRLSRLLLRLPALRLMSAAITEELFFAGLIGN 535
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ +++ ++ + R + E + + Q
Sbjct: 384 LVKACWNELFTLGLAQCSQVMNVATILAAFVNHLHDSLQQDKLPTDRGKLVMEHIFKLQE 443
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L +D YEY Y++AI LF
Sbjct: 444 FCNSMVKLCLDGYEYAYLKAIVLF 467
>gi|449266899|gb|EMC77883.1| Nuclear receptor subfamily 2 group C member 1 [Columba livia]
Length = 640
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 71/173 (41%), Gaps = 35/173 (20%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 132
L+ W ELF LGLAQ +++ ++ + R + E + + Q
Sbjct: 462 LVKACWNELFTLGLAQCSQVMNVATILTAFVNHLHGSLQQDKLPTDRGKLVMEHIFKLQE 521
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
N L +D YEY Y++AI LF +HP L +V+ I
Sbjct: 522 FCNSMVKLCLDGYEYAYLKAIVLFS-------------------PDHPG--LENVVQIEK 560
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
Q + Y+ YP R ++ L LP L+ + + + EELFF +IG+
Sbjct: 561 FQEKAYMEFQDYVTKAYPDDTYRLSRLLLRLPALRLMSAAITEELFFAGLIGN 613
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ +++ ++ + R + E + + Q
Sbjct: 462 LVKACWNELFTLGLAQCSQVMNVATILTAFVNHLHGSLQQDKLPTDRGKLVMEHIFKLQE 521
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L +D YEY Y++AI LF
Sbjct: 522 FCNSMVKLCLDGYEYAYLKAIVLF 545
>gi|262070641|gb|ACY08799.1| ultraspiracle, partial [Tribolium destructor]
Length = 283
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 67/166 (40%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGL------AQYLPSLDLGELVESCKSRHVDIEEEVIRFQS-VLNEFK 138
LLL W EL I AQ L G V + V + R S ++N+ K
Sbjct: 133 LLLRAGWNELLIAAFSHRSMQAQDAIVLATGLTVNKSTANAVGVGNIYDRVLSELVNKMK 192
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI L+ + ++ V + ++
Sbjct: 193 EMKMDKTELGCLRAIILYNPDVRG---------------------IKSVQEVEMLREKIY 231
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L +Y T +P++P RF K+ L LP L+SI LE LFF +IG
Sbjct: 232 GVLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 277
>gi|262070639|gb|ACY08798.1| ultraspiracle, partial [Tribolium madens]
Length = 284
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 67/166 (40%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGL------AQYLPSLDLGELVESCKSRHVDIEEEVIRFQS-VLNEFK 138
LLL W EL I AQ L G V + V + R S ++N+ K
Sbjct: 134 LLLRAGWNELLIAAFSHRSMQAQDAIVLATGLTVNKSTAHAVGVGNIYDRVLSELVNKMK 193
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI L+ + ++ V + ++
Sbjct: 194 EMKMDKTELGCLRAIILYNPDVRG---------------------IKSVQEVEMLREKIY 232
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L +Y T +P++P RF K+ L LP L+SI LE LFF +IG
Sbjct: 233 GVLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 278
>gi|262070637|gb|ACY08797.1| ultraspiracle, partial [Tribolium freemani]
Length = 284
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 67/166 (40%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGL------AQYLPSLDLGELVESCKSRHVDIEEEVIRFQS-VLNEFK 138
LLL W EL I AQ L G V + V + R S ++N+ K
Sbjct: 134 LLLRAGWNELLIAAFSHRSMQAQDAIVLATGLTVNKSTAHAVGVGNIYDRVLSELVNKMK 193
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI L+ + ++ V + ++
Sbjct: 194 EMKMDKTELGCLRAIILYNPDVRG---------------------IKSVQEVEMLREKIY 232
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L +Y T +P++P RF K+ L LP L+SI LE LFF +IG
Sbjct: 233 GVLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 278
>gi|351712230|gb|EHB15149.1| Nuclear receptor subfamily 2 group C member 1 [Heterocephalus
glaber]
Length = 606
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 77/186 (41%), Gaps = 36/186 (19%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 132
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 428 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHGSLQQDKMSPERRKLLMEHIFKLQE 487
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
N L ID +EY Y++AI LF +HP L ++ I
Sbjct: 488 FCNSMVRLCIDGHEYAYLKAIVLFSP-------------------DHPG--LENMEQIEK 526
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
Q + YI YP R ++ L LP L+ + + + EELFF+ +IG N I
Sbjct: 527 FQEKAYVEFQDYITRTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIG-NVRIDSV 585
Query: 253 IWHMYK 258
I H+ K
Sbjct: 586 IPHILK 591
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 428 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHGSLQQDKMSPERRKLLMEHIFKLQE 487
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L ID +EY Y++AI LF
Sbjct: 488 FCNSMVRLCIDGHEYAYLKAIVLF 511
>gi|1710810|sp|P51129.1|RXRG_XENLA RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
Length = 470
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 63/166 (37%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + S+ G L+ + H F VL E K
Sbjct: 307 ILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHNAGVGSIFDRVLTELVSKMK 366
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+++D E +RAI LF + L + + A++
Sbjct: 367 DMDMDKSELGCLRAIVLFNPDAKG---------------------LSNAAEVEALREKVY 405
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 406 ATLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 451
>gi|432111870|gb|ELK34912.1| Nuclear receptor subfamily 2 group C member 1 [Myotis davidii]
Length = 549
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 76/186 (40%), Gaps = 36/186 (19%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 132
L+ W ELF LGLAQ +++ ++ + R + E + + Q
Sbjct: 371 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHSSLQQDKMSTERRKLLMEHIFKLQE 430
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
N L +D YEY Y++AI LF +HP L ++ I
Sbjct: 431 FCNSMVKLCVDGYEYAYLKAIVLFS-------------------PDHPG--LENIEQIEK 469
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
Q + YI YP R ++ L LP L+ + + + EELFF+ +IG + I
Sbjct: 470 FQEKAYVEFQDYITRTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIG-SVRIDSV 528
Query: 253 IWHMYK 258
I H+ K
Sbjct: 529 IPHILK 534
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ +++ ++ + R + E + + Q
Sbjct: 371 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHSSLQQDKMSTERRKLLMEHIFKLQE 430
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L +D YEY Y++AI LF
Sbjct: 431 FCNSMVKLCVDGYEYAYLKAIVLF 454
>gi|184186086|ref|NP_001116968.1| orphan steroid hormone receptor 2 [Strongylocentrotus purpuratus]
gi|68566021|sp|Q26622.1|SHR2_STRPU RecName: Full=Orphan steroid hormone receptor 2; AltName:
Full=SpSHR2
gi|1054912|gb|AAB19174.1| orphan steroid hormone receptor 2 [Strongylocentrotus purpuratus]
gi|167859078|gb|ACA04474.1| Shr2 [Strongylocentrotus purpuratus]
Length = 583
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 73/173 (42%), Gaps = 35/173 (20%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 132
++ + W ELF LGLAQ ++ L ++ + R + E + + Q
Sbjct: 398 MVQKCWSELFTLGLAQCAQAMALSTILTAIVNHLQTSLQQDKLSADRVKAVMEHIWKLQE 457
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
+ L++D E+ Y++ I LF +HP L +V I
Sbjct: 458 FVTTTSKLDVDQTEFAYLKTIVLFS-------------------PDHPG--LSNVRQIEK 496
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
Q L+ Y YPS+ RF K+ L LP L+ + ++EELFF +IG+
Sbjct: 497 FQEMAISELHDYEAQTYPSKLNRFSKLLLRLPTLRLLSPAIMEELFFAGLIGN 549
>gi|195583620|ref|XP_002081615.1| GD11109 [Drosophila simulans]
gi|194193624|gb|EDX07200.1| GD11109 [Drosophila simulans]
Length = 414
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 85/191 (44%), Gaps = 45/191 (23%)
Query: 86 LLLAESWRELFILGLAQYLPSLD-----LGELVESCKS-----------RHVDIEEEVIR 129
+LL ESW ELF+L Q+ LD L + E C + ++ +V
Sbjct: 252 ILLEESWSELFLLNAIQWCIPLDPTGCALFSVAEHCNNLENNANGDTCITKEELAADVRT 311
Query: 130 FQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVI 188
+ ++K + +DP E+ ++AI LF+ PE+ L+D
Sbjct: 312 LHEIFCKYKAVLVDPAEFACLKAIVLFR----------------------PETRGLKDPA 349
Query: 189 AIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTT 248
I +Q + T + +Q RF ++ L+LP L+ I S +E ++F+ IG NT
Sbjct: 350 QIENLQDQAH-----HTKTQFTAQIARFGRLLLMLPLLRMISSHKIESIYFQRTIG-NTP 403
Query: 249 IKKTIWHMYKN 259
++K + MYKN
Sbjct: 404 MEKVLCDMYKN 414
Score = 37.7 bits (86), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 16/88 (18%)
Query: 2 LLLAESWRELFILGLAQYLPSLD-----LGELVESCKS-----------RHVDIEEEVIR 45
+LL ESW ELF+L Q+ LD L + E C + ++ +V
Sbjct: 252 ILLEESWSELFLLNAIQWCIPLDPTGCALFSVAEHCNNLENNANGDTCITKEELAADVRT 311
Query: 46 FQSVLNEFKVLNIDPYEYDYIRAITLFK 73
+ ++K + +DP E+ ++AI LF+
Sbjct: 312 LHEIFCKYKAVLVDPAEFACLKAIVLFR 339
>gi|147902511|ref|NP_001088948.1| retinoid X receptor, gamma [Xenopus laevis]
gi|57032681|gb|AAH88915.1| LOC496325 protein [Xenopus laevis]
Length = 470
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 63/166 (37%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + S+ G L+ + H F VL E K
Sbjct: 307 ILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHNAGVGSIFDRVLTELVSKMK 366
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+++D E +RAI LF + L + + A++
Sbjct: 367 DMDMDKSELGCLRAIVLFNPDAKG---------------------LSNAAEVEALREKVY 405
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 406 ATLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 451
>gi|21955144|ref|NP_665723.1| nuclear receptor subfamily 2 group C member 1 [Rattus norvegicus]
gi|81902145|sp|Q8VIJ4.1|NR2C1_RAT RecName: Full=Nuclear receptor subfamily 2 group C member 1;
AltName: Full=Orphan nuclear receptor TR2; AltName:
Full=Testicular receptor 2
gi|16905400|gb|AAL31316.1|L26398_1 orphan receptor [Rattus norvegicus]
gi|38197570|gb|AAH61822.1| Nr2c1 protein [Rattus norvegicus]
gi|149067156|gb|EDM16889.1| pregnancy specific beta-1-glycoprotein 4, isoform CRA_a [Rattus
norvegicus]
Length = 590
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 77/186 (41%), Gaps = 36/186 (19%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 132
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 412 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQDKMSPERRKLLMEHIFKLQE 471
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
N L ID +EY Y++AI LF +HP L ++ I
Sbjct: 472 FCNSMVKLCIDGHEYAYLKAIVLFS-------------------PDHPG--LENMELIEK 510
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
Q + YI YP R ++ L LP L+ + + + EELFF+ +IG N I
Sbjct: 511 FQEKAYVEFQDYITRTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIG-NVRIDSV 569
Query: 253 IWHMYK 258
I H+ K
Sbjct: 570 IPHILK 575
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 412 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQDKMSPERRKLLMEHIFKLQE 471
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L ID +EY Y++AI LF
Sbjct: 472 FCNSMVKLCIDGHEYAYLKAIVLF 495
>gi|344287133|ref|XP_003415309.1| PREDICTED: nuclear receptor subfamily 0 group B member 2-like
[Loxodonta africana]
Length = 260
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 68/177 (38%), Gaps = 40/177 (22%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEE-------------------V 127
LL + W LF+LGLAQ + ++ E+ + + + +EE V
Sbjct: 90 LLRDCWGPLFLLGLAQDTVTFEVAEVPVASILKKILLEEPGSSGSSSQLPDRPQPSLAAV 149
Query: 128 IRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDV 187
Q L F L + P EY Y++ LF + + +
Sbjct: 150 QWLQCCLESFWSLELGPKEYAYLKKTILFNPDVPGLLAPSH------------------- 190
Query: 188 IAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
I +Q L + + +P R +I L+ LKSIP +L +LFFR +IG
Sbjct: 191 --IGYLQQEAHQALCEVLEAWWPIGQGRLARILLMASTLKSIPPGLLGDLFFRPVIG 245
>gi|148694042|gb|EDL25989.1| nuclear receptor subfamily 2, group E, member 3, isoform CRA_b [Mus
musculus]
Length = 303
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 86 LLLAESWRELFILGLAQY------LPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKV 139
+LL E+W ELF+LG Q+ P L E S + R E Q ++ F+
Sbjct: 165 ILLEEAWNELFLLGAIQWSLPLDSCPLLAPPEASGSSQGRLALASAETRFLQETISRFRA 224
Query: 140 LNIDPYEYDYIRAITLFKTVIE 161
L +DP E+ ++A+ LFK E
Sbjct: 225 LAVDPTEFACLKALVLFKPGTE 246
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 2 LLLAESWRELFILGLAQY------LPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKV 55
+LL E+W ELF+LG Q+ P L E S + R E Q ++ F+
Sbjct: 165 ILLEEAWNELFLLGAIQWSLPLDSCPLLAPPEASGSSQGRLALASAETRFLQETISRFRA 224
Query: 56 LNIDPYEYDYIRAITLFKTA 75
L +DP E+ ++A+ LFK
Sbjct: 225 LAVDPTEFACLKALVLFKPG 244
>gi|440892538|gb|ELR45692.1| Nuclear receptor subfamily 2 group C member 1 [Bos grunniens mutus]
Length = 618
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 78/196 (39%), Gaps = 46/196 (23%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES-CKSRHVDIEEE------------------- 126
L+ W ELF LGLAQ +++ ++ + H +++E
Sbjct: 430 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHSSLQQEDFVCLFLIKDKISAERRKL 489
Query: 127 ----VIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES 182
+ + Q N L ID YEY Y++AI LF +HP
Sbjct: 490 LMEHIFKLQEFCNSMVKLCIDGYEYAYLKAIVLFS-------------------PDHPG- 529
Query: 183 CLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNI 242
L ++ I Q + YI YP R ++ L LP L+ + + + EELFF+ +
Sbjct: 530 -LENMEQIEKFQEKAYVEFQDYITKTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGL 588
Query: 243 IGHNTTIKKTIWHMYK 258
IG N I I H+ K
Sbjct: 589 IG-NVRIDSVIPHILK 603
>gi|121308144|emb|CAL25729.1| ultraspiracle nuclear receptor [Tribolium castaneum]
Length = 407
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 66/165 (40%), Gaps = 28/165 (16%)
Query: 87 LLAESWRELFILGL------AQYLPSLDLGELVESCKSRHVDIEEEVIRFQS-VLNEFKV 139
LL W EL I AQ L G V + V + R S ++N+ K
Sbjct: 246 LLRAGWNELLIAAFSHRSMQAQDAIVLATGLTVNKSTAHAVGVGNIYDRVLSELVNKMKE 305
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQI 199
+ +D E +RAI L+ + ++ V + ++
Sbjct: 306 MKMDKTELGCLRAIILYNPDVRG---------------------IKSVQEVEMLREKIYG 344
Query: 200 FLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L +Y T +P++P RF K+ L LP L+SI LE LFF +IG
Sbjct: 345 VLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 389
>gi|262070635|gb|ACY08796.1| ultraspiracle, partial [Tribolium brevicornis]
Length = 284
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 67/166 (40%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGL------AQYLPSLDLGELVESCKSRHVDIEEEVIRFQS-VLNEFK 138
LLL W EL I AQ L G V + V + R S ++N+ K
Sbjct: 134 LLLRAGWNELLIAAFSHRSMQAQDAIVLATGLTVNKQTAHAVGVGNIYDRVLSELVNKMK 193
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI L+ + ++ V + ++
Sbjct: 194 EMKMDKTELGCLRAIILYNPDVRG---------------------IKSVQEVEMLREKIY 232
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L +Y T +P++P RF K+ L LP L+SI LE LFF +IG
Sbjct: 233 GVLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 278
>gi|313767044|gb|ADR80691.1| nuclear receptor superfamily subfamily 0 group B member 1
[Epinephelus coioides]
Length = 296
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 80/193 (41%), Gaps = 43/193 (22%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHV-----DIEEEVIRFQS-------- 132
+L+ W L +LGLAQ + E VE + + D + EV+ QS
Sbjct: 123 MLIRSGWAPLLVLGLAQDRVDFETTETVEPSMLQRILTGVPDRQSEVLAGQSRGAAGVSV 182
Query: 133 --------VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCL 184
L + ++I EY Y++ LF +E L
Sbjct: 183 VDIEAIKAFLKKCWSVDISTKEYAYLKGAVLFNPDVEG---------------------L 221
Query: 185 RDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
R + I +++ LN+++ ++ TRF K+ + L L++I V+ +LFFR +IG
Sbjct: 222 RCLHYIQSLRREAHQALNEHVRLIHREDTTRFAKLLIALSMLRAISPPVVAQLFFRPVIG 281
Query: 245 HNTTIKKTIWHMY 257
+I++ + M+
Sbjct: 282 -TVSIEEVLMEMF 293
>gi|282165797|ref|NP_001107766.2| ultraspiracle nuclear receptor [Tribolium castaneum]
gi|270008201|gb|EFA04649.1| ultraspiracle, partial [Tribolium castaneum]
Length = 407
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 66/165 (40%), Gaps = 28/165 (16%)
Query: 87 LLAESWRELFILGL------AQYLPSLDLGELVESCKSRHVDIEEEVIRFQS-VLNEFKV 139
LL W EL I AQ L G V + V + R S ++N+ K
Sbjct: 246 LLRAGWNELLIAAFSHRSMQAQDAIVLATGLTVNKSTAHAVGVGNIYDRVLSELVNKMKE 305
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQI 199
+ +D E +RAI L+ + ++ V + ++
Sbjct: 306 MKMDKTELGCLRAIILYNPDVRG---------------------IKSVQEVEMLREKIYG 344
Query: 200 FLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L +Y T +P++P RF K+ L LP L+SI LE LFF +IG
Sbjct: 345 VLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 389
>gi|118344438|ref|NP_001072044.1| nuclear receptor [Ciona intestinalis]
gi|70571388|dbj|BAE06736.1| nuclear receptor [Ciona intestinalis]
Length = 692
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 79/186 (42%), Gaps = 36/186 (19%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC-------------KSRHV-DIEEEVIRFQS 132
LL + W ELF+LGLAQ S++L ++ + + HV + E + + Q
Sbjct: 465 LLRDCWHELFMLGLAQCSRSMNLDRIIMTIIRHLKTSLQQGKLTTSHVCHVSEHLNKLQD 524
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
+ + L +D +EY YI+A+ LF +H R I
Sbjct: 525 FVARLQKLEVDQHEYSYIKALALF-------------------SPDHVNQLHR--TQIQR 563
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
Q L ++ YP P R + L LP L+S+ S + EE+FF +IG N I
Sbjct: 564 FQSRATTELREHEMRTYPEDPDRMSLLLLSLPALRSLSSSITEEIFFAGLIG-NVQIDSI 622
Query: 253 IWHMYK 258
I ++ K
Sbjct: 623 IPYILK 628
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC-------------KSRHV-DIEEEVIRFQS 48
LL + W ELF+LGLAQ S++L ++ + + HV + E + + Q
Sbjct: 465 LLRDCWHELFMLGLAQCSRSMNLDRIIMTIIRHLKTSLQQGKLTTSHVCHVSEHLNKLQD 524
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
+ + L +D +EY YI+A+ LF
Sbjct: 525 FVARLQKLEVDQHEYSYIKALALF 548
>gi|118344170|ref|NP_001071910.1| nuclear receptor [Ciona intestinalis]
gi|92081500|dbj|BAE93297.1| nuclear receptor [Ciona intestinalis]
Length = 692
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 79/186 (42%), Gaps = 36/186 (19%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC-------------KSRHV-DIEEEVIRFQS 132
LL + W ELF+LGLAQ S++L ++ + + HV + E + + Q
Sbjct: 465 LLRDCWHELFMLGLAQCSRSMNLDRIIMTIIRHLKTSLQQGKLTTSHVCHVSEHLNKLQD 524
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
+ + L +D +EY YI+A+ LF +H R I
Sbjct: 525 FVARLQKLEVDQHEYSYIKALALF-------------------SPDHVNQLHR--TQIQR 563
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
Q L ++ YP P R + L LP L+S+ S + EE+FF +IG N I
Sbjct: 564 FQSRATTELREHEMRTYPEDPDRMSLLLLSLPALRSLSSSITEEIFFAGLIG-NVQIDSI 622
Query: 253 IWHMYK 258
I ++ K
Sbjct: 623 IPYILK 628
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC-------------KSRHV-DIEEEVIRFQS 48
LL + W ELF+LGLAQ S++L ++ + + HV + E + + Q
Sbjct: 465 LLRDCWHELFMLGLAQCSRSMNLDRIIMTIIRHLKTSLQQGKLTTSHVCHVSEHLNKLQD 524
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
+ + L +D +EY YI+A+ LF
Sbjct: 525 FVARLQKLEVDQHEYSYIKALALF 548
>gi|195027479|ref|XP_001986610.1| GH20427 [Drosophila grimshawi]
gi|193902610|gb|EDW01477.1| GH20427 [Drosophila grimshawi]
Length = 281
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 85/191 (44%), Gaps = 45/191 (23%)
Query: 86 LLLAESWRELFILGLAQYLPSLD-----LGELVESCKS-----------RHVDIEEEVIR 129
+LL ESW ELF+L Q+ L+ L + E C + ++ +V
Sbjct: 119 ILLEESWSELFLLNAIQWCIPLEPTGCALFSVAEHCNNLENNANGDNCVTKEELAADVRT 178
Query: 130 FQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVI 188
+ ++K + +DP E+ ++AI LF+ PE+ L+D
Sbjct: 179 LHEIFCKYKAVLVDPAEFACLKAIVLFR----------------------PETRGLKDPA 216
Query: 189 AIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTT 248
I +Q + T + +Q RF ++ L+LP L+ I S +E +FF+ IG NT
Sbjct: 217 QIENLQDQAH-----HTKTQFTAQIARFGRLLLMLPLLRMINSHKIESIFFQRTIG-NTP 270
Query: 249 IKKTIWHMYKN 259
++K + MYKN
Sbjct: 271 MEKVLCDMYKN 281
>gi|148237103|ref|NP_001089591.1| uncharacterized protein LOC734648 [Xenopus laevis]
gi|68533768|gb|AAH99024.1| MGC115510 protein [Xenopus laevis]
Length = 471
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 62/166 (37%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + S+ G L+ + H F VL E K
Sbjct: 308 ILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHNAGVGSIFDRVLTELVSKMK 367
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF + L + + A++
Sbjct: 368 DMEMDKSELGCLRAIVLFNPDAKG---------------------LSNAAEVEALREKVY 406
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 407 ATLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 452
>gi|61657777|emb|CAG17628.1| nuclear receptor subfamily 0, group B, member 1 [Dicentrarchus
labrax]
Length = 301
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 79/193 (40%), Gaps = 43/193 (22%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHV-----DIEEEVIRFQS-------- 132
+L+ W L +LGLAQ + E VE + + D + EV QS
Sbjct: 128 MLIRSGWAPLLVLGLAQDRVDFETTETVEPSMLQRILTGLPDRQSEVPAGQSRGAAGVSV 187
Query: 133 --------VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCL 184
L + ++I EY Y++ LF +E L
Sbjct: 188 VDIEAIKAFLKKCWSVDISTKEYAYLKGAVLFNPDVEG---------------------L 226
Query: 185 RDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
R + I +++ LN+++ ++ TRF K+ + L L++I LV+ +LFFR +IG
Sbjct: 227 RCLHYIQSLRREAHQALNEHVRLIHREDTTRFAKLLIALSMLRAINPLVVAQLFFRPVIG 286
Query: 245 HNTTIKKTIWHMY 257
I++ + M+
Sbjct: 287 A-VNIEEVLMEMF 298
>gi|6983809|emb|CAB75361.1| USP protein [Tenebrio molitor]
Length = 408
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 65/166 (39%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGL------AQYLPSLDLGELVESCKSRHVDIEEEVIRFQS-VLNEFK 138
LLL W EL I AQ L G V + V + R S ++N+ K
Sbjct: 246 LLLRAGWNELLIAAFSHRSIQAQDAIVLATGLTVNKTSAHAVGVGNIYDRVLSELVNKMK 305
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI L+ ++ V + ++
Sbjct: 306 EMKMDKTELGCLRAIILYNPTCRG---------------------IKSVQEVEMLREKIY 344
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L +Y T +P++P RF K+ L LP L+SI E LFF +IG
Sbjct: 345 GVLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCSEHLFFFKLIG 390
>gi|20302776|gb|AAM18897.1|AF391295_6 unknown [Branchiostoma floridae]
Length = 232
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 73/184 (39%), Gaps = 31/184 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNEF----K 138
+LL W EL I + + G L+ S H + F VL E +
Sbjct: 38 ILLRAGWNELLIAAFSHRSIDVKDGILLASGLHVHRSSAHQAGVGTIFDRVLTELVAKMR 97
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHT 197
+ +D E +RAI LF +P++ L D + +++
Sbjct: 98 DMKMDKTELGCLRAIVLF----------------------NPDAKGLTDPSLVESLREKV 135
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
L +Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 136 YASLEEYCKQQYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEML 194
Query: 258 KNAG 261
+ G
Sbjct: 195 EAPG 198
>gi|410966553|ref|XP_003989795.1| PREDICTED: nuclear receptor subfamily 0 group B member 2 [Felis
catus]
Length = 279
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 65/177 (36%), Gaps = 40/177 (22%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEE-------------------V 127
LL W LF+LGLAQ + ++ E + + +EE V
Sbjct: 90 LLRGCWGPLFLLGLAQDTVTFEVAEAPVPSILKKILLEEPSSSSGSGQLPDRPQPSLAAV 149
Query: 128 IRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDV 187
Q L F L + P EY Y++ LF + S H
Sbjct: 150 QWLQCCLESFWSLQLGPKEYAYLKETILFNPGVPGL-----------HASSH-------- 190
Query: 188 IAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
+ +Q L K + T P+ R ++ L LKSIP +L +LFFR I+G
Sbjct: 191 --VGHLQQKAHHALCKALETWCPAGQGRLARVLLTASTLKSIPPSLLGDLFFRPIVG 245
>gi|158429174|pdb|2NXX|A Chain A, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
gi|158429176|pdb|2NXX|B Chain B, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
gi|158429178|pdb|2NXX|C Chain C, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
gi|158429180|pdb|2NXX|D Chain D, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
Length = 235
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 67/165 (40%), Gaps = 28/165 (16%)
Query: 87 LLAESWRELFILGL------AQYLPSLDLGELVESCKSRHVDIEEEVIRFQS-VLNEFKV 139
LL W EL I AQ L G V + V + R S ++N+ K
Sbjct: 74 LLRAGWNELLIAAFSHRSMQAQDAIVLATGLTVNKSTAHAVGVGNIYDRVLSELVNKMKE 133
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQI 199
+ +D E +RAI L+ D R ++ V + ++
Sbjct: 134 MKMDKTELGCLRAIILYN-------PDVRG--------------IKSVQEVEMLREKIYG 172
Query: 200 FLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L +Y T +P++P RF K+ L LP L+SI LE LFF +IG
Sbjct: 173 VLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 217
>gi|149637974|ref|XP_001510105.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-like
[Ornithorhynchus anatinus]
Length = 561
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 70/173 (40%), Gaps = 35/173 (20%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 132
L+ W ELF LGLAQ +++ ++ + R + E + + Q
Sbjct: 383 LVKACWNELFTLGLAQCSQVMNVATILTAFVNHLHSSLQQDKLSSERGKLVMEHIFKLQE 442
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
N L +D YEY Y++AI LF +HP L ++ I
Sbjct: 443 FCNSMVKLCLDGYEYAYLKAIVLFSP-------------------DHPG--LENMGQIEK 481
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
Q + YI YP R ++ L LP L+ + + + EELFF +IG+
Sbjct: 482 FQEKAYMEFQDYITKAYPDDTYRLSRLLLRLPALRLMSATITEELFFAGLIGN 534
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ +++ ++ + R + E + + Q
Sbjct: 383 LVKACWNELFTLGLAQCSQVMNVATILTAFVNHLHSSLQQDKLSSERGKLVMEHIFKLQE 442
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L +D YEY Y++AI LF
Sbjct: 443 FCNSMVKLCLDGYEYAYLKAIVLF 466
>gi|432095516|gb|ELK26668.1| Usher syndrome type-1C protein-binding protein 1 [Myotis davidii]
Length = 768
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 24/112 (21%)
Query: 146 EYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHTQIFLNKY 204
EY ++AI LF P++C L D + ++Q Q+ L +Y
Sbjct: 665 EYGCLKAIALFT----------------------PDACGLSDPAHVESLQEKAQVALTEY 702
Query: 205 IHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+ I M
Sbjct: 703 VRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIETLIRDM 753
>gi|283488474|gb|ADB24760.1| retinoid x receptor [Agelena silvatica]
Length = 406
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 72/171 (42%), Gaps = 29/171 (16%)
Query: 86 LLLAESWRELFILGLAQYLPS------LDLGELVESCKSRHVDIEEEVIRFQS-VLNEFK 138
+LL W EL I S L G +V + + + R S ++N+ +
Sbjct: 244 ILLKSGWNELLIASFCHKSVSVKDGIVLASGTIVHRNSAHNAGVGTIFDRLLSELVNKMR 303
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E ++AI LF E K +S+ + LRD + A
Sbjct: 304 EMKMDKTELGCLKAIILFNP----EAKHLKSTQEVTN--------LRDKVYTA------- 344
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTI 249
L +Y +YP Q RF K+ L LP L+SI LE LFF +IG NT I
Sbjct: 345 --LEEYCKQMYPQQNGRFPKLLLRLPALRSIGLKCLEHLFFFKLIG-NTPI 392
>gi|301608498|ref|XP_002933799.1| PREDICTED: retinoic acid receptor RXR-gamma [Xenopus (Silurana)
tropicalis]
Length = 468
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 62/166 (37%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + S+ G L+ + H F VL E K
Sbjct: 305 ILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHNAGVGSIFDRVLTELVSKMK 364
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF + L + + A++
Sbjct: 365 DMEMDKSELGCLRAIVLFNPDAKG---------------------LSNAAEVEALREKVY 403
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 404 ATLESYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 449
>gi|113197752|gb|AAI21596.1| LOC779621 protein [Xenopus (Silurana) tropicalis]
Length = 452
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 62/166 (37%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + S+ G L+ + H F VL E K
Sbjct: 289 ILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHNAGVGSIFDRVLTELVSKMK 348
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF + L + + A++
Sbjct: 349 DMEMDKSELGCLRAIVLFNPDAKG---------------------LSNAAEVEALREKVY 387
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 388 ATLESYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 433
>gi|148725669|emb|CAN87977.1| retinoid x receptor, alpha b [Danio rerio]
Length = 202
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 70/178 (39%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNEF----K 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 39 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHTAGVGAIFDRVLTELVSKMR 98
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N S + SE + A++
Sbjct: 99 DMQMDKTELGCLRAIVLF----------NPDSKGLSNPSE-----------VEALRERVY 137
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 138 ASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 194
>gi|324512063|gb|ADY45006.1| Steroid receptor seven-up, isoform B/C [Ascaris suum]
Length = 417
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 32/168 (19%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC---------KSRHVDIEEEVIRFQSVLNEF 137
LL SW ELF++ AQ+ + L+ + R V + + FQ +
Sbjct: 241 LLRASWAELFVVNAAQFGMPVHAAPLLAASVLHSTSPLPPDRLVLFMDRIRVFQGQVERL 300
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGH 196
K L++D E+ ++A+ LF + C L DV+ + +IQ
Sbjct: 301 KSLHMDSAEFSSLKAVILFSA----------------------DCCGLSDVMRVESIQEK 338
Query: 197 TQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
Q L +Y T Q RF ++ L LP L++I S ++E+LFF ++G
Sbjct: 339 VQSALEEYCRTQRQQQIGRFGRLLLRLPSLRTISSTMIEQLFFVKLVG 386
>gi|344286664|ref|XP_003415077.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Loxodonta
africana]
Length = 489
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 64/166 (38%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + S+ G L+ + H F VL E K
Sbjct: 326 ILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMK 385
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N + + SE + A++
Sbjct: 386 DMQMDKSELGCLRAIVLF----------NPDAKGLSNPSE-----------VEALREKVY 424
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 425 ATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 470
>gi|45383862|ref|NP_989455.1| nuclear receptor subfamily 2 group C member 1 [Gallus gallus]
gi|21518633|gb|AAM60748.1|AF323691_1 testis-specific receptor 2-like protein TRR [Gallus gallus]
Length = 569
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 70/173 (40%), Gaps = 35/173 (20%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 132
L+ W ELF LGLAQ +++ ++ + R + E + + Q
Sbjct: 391 LVKACWNELFTLGLAQCSQVMNVATILAAFVNHLHDSLQQDKLPTDRGKLVMEHIFKLQE 450
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
N L +D YEY Y++AI L +HP L +V+ I
Sbjct: 451 FCNSMVKLCLDGYEYAYLKAIVLLS-------------------PDHPG--LENVVQIEK 489
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
Q + Y+ YP R ++ L LP L+ + + + EELFF +IG+
Sbjct: 490 FQEKAYMEFQDYVTKAYPDDTYRLSRLLLRLPALRLMSAAITEELFFAGLIGN 542
Score = 37.4 bits (85), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ +++ ++ + R + E + + Q
Sbjct: 391 LVKACWNELFTLGLAQCSQVMNVATILAAFVNHLHDSLQQDKLPTDRGKLVMEHIFKLQE 450
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L +D YEY Y++AI L
Sbjct: 451 FCNSMVKLCLDGYEYAYLKAIVLL 474
>gi|154936862|dbj|BAF75376.1| retinoid X receptor [Marsupenaeus japonicus]
Length = 442
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 69/167 (41%), Gaps = 30/167 (17%)
Query: 86 LLLAESWRELFI-------LGLAQYLPSLDLGELVESCKSRHVDIEEEVIRFQS-VLNEF 137
+LL W EL I +G+ + L G +V + H + + R S ++ +
Sbjct: 275 ILLKAGWNELLIASFSHRSMGVKDGI-VLATGLVVHRSSAHHAGVGDIFDRVLSELVAKM 333
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
K + +D E +R+I LF D + S+ D I ++
Sbjct: 334 KEMKMDKTELGCLRSIVLFNP-------DVKGLSACD--------------TIEVLREKV 372
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L +Y T YP QP RF K+ L LP L+SI LE LF ++G
Sbjct: 373 YATLEEYTRTSYPDQPGRFAKLLLRLPALRSIGLKCLEYLFLFKLLG 419
>gi|18859345|ref|NP_571228.1| retinoic acid receptor RXR-alpha-B [Danio rerio]
gi|52783417|sp|Q90415.1|RXRAB_DANRE RecName: Full=Retinoic acid receptor RXR-alpha-B; AltName:
Full=Nuclear receptor subfamily 2 group B member 1-B;
AltName: Full=Retinoid X receptor alpha-B
gi|1046289|gb|AAC59719.1| retinoid X receptor [Danio rerio]
Length = 379
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 70/178 (39%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 216 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHTAGVGAIFDRVLTELVSKMR 275
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N S + SE + A++
Sbjct: 276 DMQMDKTELGCLRAIVLF----------NPDSKGLSNPSE-----------VEALRERVY 314
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 315 ASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 371
>gi|197941306|gb|ACH78357.1| retinoid X receptor alpha [Sebastiscus marmoratus]
Length = 331
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 66/166 (39%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 168 ILLRAGWNELLIASFSHRSIAIKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 227
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF D++ S+ + + A++
Sbjct: 228 DMQMDKTELGCLRAIVLFNP-------DSKGLSNPGE--------------VEALREKVY 266
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 267 ASLEAYCKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 312
>gi|126513141|gb|ABO15684.1| retinoid X receptor alpha, partial [Latris lineata]
Length = 274
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 71/178 (39%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 118 ILLRAGWNELLIASFSHRSIAIKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 177
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF D++ S+ + + A++
Sbjct: 178 DMQMDKTELGCLRAIVLFNP-------DSKGLSNPGE--------------VEALREKVY 216
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 217 ASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFRLIG-DTPIDTFLMEM 273
>gi|307210265|gb|EFN86915.1| Nuclear receptor subfamily 2 group C member 2 [Harpegnathos
saltator]
Length = 565
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 18/106 (16%)
Query: 65 YIRAITLFKTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------- 115
+ R I F+ A S + A L+ SW +LF LGLAQ +L L ++ S
Sbjct: 376 WARGIPAFQ-ALPSEIQTA---LVRSSWGQLFTLGLAQCAYTLSLPSILSSIINHLQASI 431
Query: 116 -----CKSRHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLF 156
S+ + E + R Q +N L +D EY Y++A+TLF
Sbjct: 432 AQEKITASKVKSLTEHICRLQDCVNSLHKLQVDSVEYAYLKALTLF 477
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 20/111 (18%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ SW +LF LGLAQ +L L ++ S S+ + E + R Q
Sbjct: 394 LVRSSWGQLFTLGLAQCAYTLSLPSILSSIINHLQASIAQEKITASKVKSLTEHICRLQD 453
Query: 49 VLNEFKVLNIDPYEYDYIRAITLFKT----AFTSRRELAGHLLLAESWREL 95
+N L +D EY Y++A+TLF A RR++ +L +W EL
Sbjct: 454 CVNSLHKLQVDSVEYAYLKALTLFSPDNMLAGVWRRKV--EVLQDAAWTEL 502
>gi|146332014|gb|ABQ22513.1| retinoic acid receptor RXR-alpha-like protein [Callithrix jacchus]
Length = 187
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 70/178 (39%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNEF----K 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 24 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 83
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N S + +E + A++
Sbjct: 84 DMQMDKTELGCLRAIVLF----------NPDSKGLSNPAE-----------VEALREKVY 122
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 123 ASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 179
>gi|149695045|ref|XP_001500718.1| PREDICTED: nuclear receptor subfamily 0 group B member 2-like
[Equus caballus]
Length = 313
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 67/177 (37%), Gaps = 40/177 (22%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR----------------- 129
LL W LF+LGLAQ + ++ E + + +EE R
Sbjct: 90 LLRGCWAPLFLLGLAQDTVTFEVTEAPVPSILKKILLEEPSSRAGSGQLLDRPQPSLAAV 149
Query: 130 --FQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDV 187
Q L F L + P EY Y++ LF + +V +SS
Sbjct: 150 QWLQYCLESFWSLELGPKEYAYLKGTILF----DPDVPGLHASSH--------------- 190
Query: 188 IAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
I +Q L + + P+ R ++ L LKSIP +L +LFFR IIG
Sbjct: 191 --IGHLQQEAHQALCEVLEPWCPAGQGRLARVLLTASTLKSIPPSLLGDLFFRPIIG 245
>gi|66864094|dbj|BAD99298.1| ultraspiracle [Leptinotarsa decemlineata]
Length = 384
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 74/181 (40%), Gaps = 29/181 (16%)
Query: 86 LLLAESWRELFILGLA------QYLPSLDLGELVESCKSRHVDIEEEVIRFQS-VLNEFK 138
LLL W EL I + Q L G + ++ V + R S ++N+ K
Sbjct: 222 LLLRAGWNELLIASFSHRSMQTQEGIILATGLTINKSTAQAVGVGNIYDRVLSELVNKMK 281
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI L+ + L+ + ++
Sbjct: 282 EMRMDKTELGCLRAIILYNPDVRG---------------------LQSTQEVEILREKIY 320
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 258
L +Y T +P++P RF K+ L LP L+SI LE LFF +IG + TI I M +
Sbjct: 321 ENLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFRLIG-DVTIDTFITEMLE 379
Query: 259 N 259
N
Sbjct: 380 N 380
>gi|16930821|ref|NP_476474.1| nuclear receptor subfamily 0 group B member 2 [Rattus norvegicus]
gi|81882239|sp|P97947.1|NR0B2_RAT RecName: Full=Nuclear receptor subfamily 0 group B member 2;
AltName: Full=Orphan nuclear receptor SHP; AltName:
Full=Small heterodimer partner
gi|1871465|dbj|BAA13127.1| small heterodimer partner homolog [Rattus norvegicus]
gi|1871469|dbj|BAA13171.1| small heterodimer partner homologue [Rattus norvegicus]
gi|56972355|gb|AAH88117.1| Nuclear receptor subfamily 0, group B, member 2 [Rattus norvegicus]
gi|149024178|gb|EDL80675.1| nuclear receptor subfamily 0, group B, member 2 [Rattus norvegicus]
Length = 260
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 40/177 (22%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEE-------------------V 127
LL W LF+LGLAQ + ++ E + + +EE V
Sbjct: 90 LLEGCWGPLFLLGLAQDTVTFEVAEAPVPSILKKILLEEPNSGAQGAQPPDPPQPSLAAV 149
Query: 128 IRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDV 187
Q L F L + P EY Y++ LF + L
Sbjct: 150 QWLQHCLESFWSLELGPKEYAYLKGTILFNPDVPG---------------------LHAS 188
Query: 188 IAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
IA +Q L + + YP+ R +I L+ LK+I +L +LFFR +IG
Sbjct: 189 CHIAHLQQEAHWALCEVLEPWYPASQGRLARILLMASTLKNISCTLLVDLFFRPVIG 245
>gi|354801981|gb|AER39752.1| retinoid X receptor [Sepia officinalis]
Length = 292
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 75/183 (40%), Gaps = 35/183 (19%)
Query: 87 LLAESWRELFILGLA-QYLPSLD-----LGELVESCKSRHVDIEEEVIRFQSVLNE---- 136
LL W EL I G + + +P D G V + H ++ F VL+E
Sbjct: 130 LLRAGWNELLIAGFSHRSIPVKDGILLATGIHVHRSSAHHAGVD---TIFDRVLSELVAK 186
Query: 137 FKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGH 196
+ + +D E +RAI LF D + S+ + + +++
Sbjct: 187 MREMKMDKSELGCLRAIVLFNP-------DAKGLVSTQE--------------VESLREK 225
Query: 197 TQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L +Y YP + RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 226 VYATLEEYCKCQYPEETGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 284
Query: 257 YKN 259
+N
Sbjct: 285 LEN 287
>gi|242000854|ref|XP_002435070.1| retinoid X receptor, putative [Ixodes scapularis]
gi|215498400|gb|EEC07894.1| retinoid X receptor, putative [Ixodes scapularis]
Length = 400
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 56/132 (42%), Gaps = 28/132 (21%)
Query: 130 FQSVLNE----FKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CL 184
F VL E + + +D E +RA+ LF +PE+ L
Sbjct: 285 FDRVLTELVAKMREMKMDRTELGCLRAVVLF----------------------NPEAKGL 322
Query: 185 RDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
R + A++ L ++ YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 323 RSTAQVEALREKVYAALEEHCRQQYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 382
Query: 245 HNTTIKKTIWHM 256
+T I + M
Sbjct: 383 -DTPIDNFLLSM 393
>gi|45384256|ref|NP_990625.1| retinoic acid receptor RXR-gamma [Gallus gallus]
gi|133700|sp|P28701.1|RXRG_CHICK RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|63496|emb|CAA41743.1| retinoic acid receptor [Gallus gallus]
Length = 467
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 69/178 (38%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + S+ G L+ + H F VL E K
Sbjct: 304 ILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMK 363
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF D + SS + + +++
Sbjct: 364 DMQMDKSELGCLRAIVLFN-------PDAKGLSSPSE--------------VESLREKVY 402
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 403 ATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 459
>gi|1583309|prf||2120366D retinoid X receptor:ISOTYPE=gamma
Length = 391
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 70/178 (39%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 228 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHTAGVGAIFDRVLTELVSKMR 287
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N S + SE + A++
Sbjct: 288 DMQMDKTELGCLRAIVLF----------NPDSKGLSNPSE-----------VEALRERVY 326
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 327 ASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 383
>gi|355717631|gb|AES06001.1| retinoid X receptor, gamma [Mustela putorius furo]
Length = 249
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 68/178 (38%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + S+ G L+ + H F VL E K
Sbjct: 86 ILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMK 145
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N + + SE + ++
Sbjct: 146 DMQMDKSELGCLRAIVLF----------NPDAKGLSNPSE-----------VETLREKVY 184
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 185 ATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 241
>gi|325930187|gb|ADZ45552.1| retinoid X receptor gamma [Taeniopygia guttata]
Length = 468
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 69/178 (38%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + S+ G L+ + H F VL E K
Sbjct: 305 ILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMK 364
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF D + SS + + +++
Sbjct: 365 DMQMDKSELGCLRAIVLFN-------PDAKGLSSPSE--------------VESLREKVY 403
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 404 ATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 460
>gi|371940918|ref|NP_001243138.1| retinoic acid receptor RXR-gamma [Taeniopygia guttata]
Length = 468
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 69/178 (38%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + S+ G L+ + H F VL E K
Sbjct: 305 ILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMK 364
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF D + SS + + +++
Sbjct: 365 DMQMDKSELGCLRAIVLFN-------PDAKGLSSPSE--------------VESLREKVY 403
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 404 ATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 460
>gi|152149581|pdb|2GL8|A Chain A, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
gi|152149582|pdb|2GL8|B Chain B, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
gi|152149583|pdb|2GL8|C Chain C, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
gi|152149584|pdb|2GL8|D Chain D, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
Length = 241
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 63/166 (37%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNEF----K 138
+LL W EL I + S+ G L+ + H F VL E K
Sbjct: 78 ILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMK 137
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N + + SE + ++
Sbjct: 138 DMQMDKSELGCLRAIVLF----------NPDAKGLSNPSE-----------VETLREKVY 176
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 177 ATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 222
>gi|449268313|gb|EMC79183.1| Retinoic acid receptor RXR-gamma, partial [Columba livia]
Length = 451
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 69/178 (38%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + S+ G L+ + H F VL E K
Sbjct: 288 ILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMK 347
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF D + SS + + +++
Sbjct: 348 DMQMDKSELGCLRAIVLFN-------PDAKGLSSPSE--------------VESLREKVY 386
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 387 ATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 443
>gi|355717622|gb|AES05998.1| retinoid X receptor, alpha [Mustela putorius furo]
Length = 202
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 70/178 (39%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNEF----K 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 39 ILLRAGWNELLIASFSHRSITVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 98
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N S + +E + A++
Sbjct: 99 DMQMDKTELGCLRAIVLF----------NPDSKGLSNPAE-----------VEALREKVY 137
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 138 ASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 194
>gi|84028533|gb|ABC49725.1| retinoid X receptor 2 [Petromyzon marinus]
Length = 512
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 62/166 (37%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + + G L+ + H F VL E +
Sbjct: 314 ILLRAGWNELHIASFSHRSIGVSDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMR 373
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+N+D E +RAI LF D + SS + A +
Sbjct: 374 DMNMDKAELGCLRAIVLFNP-------DAKGLSSPS--------------GVEAFREKVY 412
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 413 ASLESYCKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 458
>gi|24710922|gb|AAN17672.1| orphan nuclear receptor Dax-1 [Oreochromis niloticus]
gi|82659433|gb|ABB88833.1| orphan nuclear receptor DAX1 [Oreochromis niloticus]
Length = 296
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 78/197 (39%), Gaps = 51/197 (25%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVE---------SCKSRH---------------- 120
+L+ W L +LGLAQ + E VE C R
Sbjct: 123 VLIRSGWAPLLVLGLAQDRVDFETTETVEPSMLQRILTGCPDRQSEAVGGQNRGAPGVSV 182
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
VDIE ++ L + ++I EY Y++ LF +E
Sbjct: 183 VDIEA----IKAFLKKCWSVDISTKEYAYLKGAVLFNPDLEG------------------ 220
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
LR + I +++ LN+++ ++ TRF K+ + L L++I V+ +LFFR
Sbjct: 221 ---LRCLHYIQSLRREAHQALNEHVRLIHREDTTRFAKLLIALSMLRAISPPVVAQLFFR 277
Query: 241 NIIGHNTTIKKTIWHMY 257
+IG I++ + M+
Sbjct: 278 PVIG-TVNIEEVLMEMF 293
>gi|403301502|ref|XP_003941427.1| PREDICTED: retinoic acid receptor RXR-alpha [Saimiri boliviensis
boliviensis]
Length = 365
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 71/179 (39%), Gaps = 31/179 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 202 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 261
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHT 197
+ +D E +RAI LF +P+S L + + A++
Sbjct: 262 DMQMDKTELGCLRAIVLF----------------------NPDSKGLSNPAEVEALREKV 299
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 300 YASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 357
>gi|348528222|ref|XP_003451617.1| PREDICTED: nuclear receptor subfamily 0 group B member 1
[Oreochromis niloticus]
Length = 294
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 78/197 (39%), Gaps = 51/197 (25%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVE---------SCKSRH---------------- 120
+L+ W L +LGLAQ + E VE C R
Sbjct: 121 VLIRSGWAPLLVLGLAQDRVDFETTETVEPSMLQRILTGCPDRQSEAVGGQNRGAPGVSV 180
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
VDIE ++ L + ++I EY Y++ LF +E
Sbjct: 181 VDIEA----IKAFLKKCWSVDISTKEYAYLKGAVLFNPDLEG------------------ 218
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
LR + I +++ LN+++ ++ TRF K+ + L L++I V+ +LFFR
Sbjct: 219 ---LRCLHYIQSLRREAHQALNEHVRLIHREDTTRFAKLLIALSMLRAISPPVVAQLFFR 275
Query: 241 NIIGHNTTIKKTIWHMY 257
+IG I++ + M+
Sbjct: 276 PVIG-TVNIEEVLMEMF 291
>gi|291241519|ref|XP_002740657.1| PREDICTED: Orphan nuclear receptor NR6A1, putative-like
[Saccoglossus kowalevskii]
Length = 404
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 61/159 (38%), Gaps = 47/159 (29%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLNIDPY 145
LLL + W ELF+L A Y P VD+ +++FQ + D
Sbjct: 282 LLLEDCWGELFLLHAA-YWP---------------VDLATLIVQFQGSADTAAGSGFDSL 325
Query: 146 EYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYI 205
+ ++ L + + +Q Q+ L +Y+
Sbjct: 326 KVNFKEG-------------------------------LGNTQQVEFLQDQAQLILAQYV 354
Query: 206 HTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
++ P P RF K+ L L L++ S ++EELFFR IG
Sbjct: 355 NSKTPQNPARFGKLLLTLASLRTYKSEIIEELFFRKTIG 393
>gi|1710719|sp|P51128.1|RXRA_XENLA RecName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Nuclear receptor subfamily 2 group B member 1;
AltName: Full=Retinoid X receptor alpha
Length = 488
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 66/166 (39%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 325 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 384
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF D++ L + + + A++
Sbjct: 385 DMQMDKTELGCLRAIVLFN-------PDSKG--------------LSNPLEVEALREKVY 423
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 424 ASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 469
>gi|154183751|gb|ABS70716.1| retinoid X receptor b isoform [Nucella lapillus]
Length = 446
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 64/166 (38%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I G + + G L+ + H + F VL E +
Sbjct: 281 ILLRAGWNELLIAGFSHRSTQVTDGILLATGLHVHRSSAHQAGVGTIFDRVLTELVAKMR 340
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF + L+ V + ++
Sbjct: 341 EMKMDKTELGCLRAIVLFNPDAKG---------------------LQAVQEVEQLREKVY 379
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L +Y YP +P RF K+ L LP L+SI LE LFF +IG
Sbjct: 380 ASLEEYCKQRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 425
>gi|375151577|ref|NP_001243499.1| retinoic acid receptor RXR-gamma isoform c [Homo sapiens]
gi|375151581|ref|NP_001243500.1| retinoic acid receptor RXR-gamma isoform c [Homo sapiens]
gi|410034069|ref|XP_003949681.1| PREDICTED: retinoic acid receptor RXR-gamma [Pan troglodytes]
gi|410034071|ref|XP_003949682.1| PREDICTED: retinoic acid receptor RXR-gamma [Pan troglodytes]
Length = 340
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 63/166 (37%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + S+ G L+ + H F VL E K
Sbjct: 177 ILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMK 236
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N + + SE + ++
Sbjct: 237 DMQMDKSELGCLRAIVLF----------NPDAKGLSNPSE-----------VETLREKVY 275
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 276 ATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 321
>gi|242008309|ref|XP_002424949.1| retinoid X receptor, putative [Pediculus humanus corporis]
gi|212508563|gb|EEB12211.1| retinoid X receptor, putative [Pediculus humanus corporis]
Length = 420
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 88/236 (37%), Gaps = 41/236 (17%)
Query: 29 VESCKSRHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTAFTSRRELAGH--- 85
VES + D+ E I E KV N + YE T E A H
Sbjct: 188 VESSGAMQADMPVERILEAEKRVECKVENQNEYENAVANICQATNTQLYQLVEWAKHIPH 247
Query: 86 ----------LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQS 132
LLL W EL I + + G ++ + + H + + F
Sbjct: 248 FSSLPIEDQVLLLRAGWNELLIAAFSHRSVEVRDGIVLGAGITVHRNSAHQAGVGTIFDR 307
Query: 133 VLNE----FKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVI 188
VL E + +N+D E +R+I LF EV+ +S + LR+ +
Sbjct: 308 VLTELVAKMRDMNMDRTELGCLRSIILFNP----EVRGLKSGQEVE--------LLREKV 355
Query: 189 AIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
A L +Y P +P RF K+ L LP L+SI LE LFF +IG
Sbjct: 356 YAA---------LEEYTRVTRPEEPGRFAKLLLRLPALRSIGLKCLEHLFFFRLIG 402
>gi|347360576|emb|CCA61271.1| retinoid X receptor, isoform S [Lithobius peregrinus]
Length = 305
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 49/119 (41%), Gaps = 26/119 (21%)
Query: 130 FQSVLNE----FKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLR 185
F VL E + + +D E +RAI LF +P LR
Sbjct: 206 FDRVLTELVAKMREMKMDRTELGCLRAIILF----------------------NPVKGLR 243
Query: 186 DVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
I +++ L +Y YP +P RF K+ L LP L+SI LE LFF +IG
Sbjct: 244 SSQVIESLRERVYAALEEYCKQQYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 302
>gi|146186456|gb|ABQ09280.1| retinoid X receptor alpha 1 [Oryzias latipes]
Length = 250
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 71/178 (39%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 94 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 153
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF D++ S+ + + A++
Sbjct: 154 DMQMDKTELGCLRAIVLFNP-------DSKGLSNPGE--------------VEALREKVY 192
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 193 ASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 249
>gi|228480295|ref|NP_001153203.1| retinoic acid receptor RXR-gamma isoform 2 [Mus musculus]
gi|386369|gb|AAB27245.1| retinoid-X receptor-gamma isoform 2 [Mus sp.]
Length = 340
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 68/178 (38%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + S+ G L+ + H F VL E K
Sbjct: 177 ILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMK 236
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N + + SE + ++
Sbjct: 237 DMQMDKSELGCLRAIVLF----------NPDAKGLSNPSE-----------VETLREKVY 275
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 276 ATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDSFLMEM 332
>gi|154183749|gb|ABS70715.1| retinoid X receptor a isoform [Nucella lapillus]
Length = 441
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 64/166 (38%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I G + + G L+ + H + F VL E +
Sbjct: 276 ILLRAGWNELLIAGFSHRSTQVTDGILLATGLHVHRSSAHQAGVGTIFDRVLTELVAKMR 335
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF + L+ V + ++
Sbjct: 336 EMKMDKTELGCLRAIVLFNPDAKG---------------------LQAVQEVEQLREKVY 374
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L +Y YP +P RF K+ L LP L+SI LE LFF +IG
Sbjct: 375 ASLEEYCKQRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 420
>gi|354492413|ref|XP_003508343.1| PREDICTED: nuclear receptor subfamily 0 group B member 2-like
[Cricetulus griseus]
gi|344245840|gb|EGW01944.1| Nuclear receptor subfamily 0 group B member 2 [Cricetulus griseus]
Length = 260
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 40/177 (22%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEE-------------------V 127
LL W LF+LGLAQ + ++ E + + +EE V
Sbjct: 90 LLGVCWGPLFLLGLAQDTVTFEVAEAPVPSILKKILLEEPSSGTQGTQLPDRPQPSLAAV 149
Query: 128 IRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDV 187
Q L F L + P EY Y++ LF + L
Sbjct: 150 QWLQRCLESFWSLELGPKEYAYLKGTILFNPDVPG---------------------LHAS 188
Query: 188 IAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
I+ +Q L + + YP+ R +I L+ LK+I +L +LFFR IIG
Sbjct: 189 CHISHLQQEAHWALCEVLEPWYPASQGRLARILLMASTLKNISCSLLVDLFFRPIIG 245
>gi|239782043|pdb|3H0A|A Chain A, Crystal Structure Of Peroxisome Proliferator-Activated
Receptor Gamma (Pparg) And Retinoic Acid Receptor Alpha
(Rxra) In Complex With 9-Cis Retinoic Acid, Co-Activator
Peptide, And A Partial Agonist
Length = 228
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 70/178 (39%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNEF----K 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 72 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 131
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N S + +E + A++
Sbjct: 132 DMQMDKTELGCLRAIVLF----------NPDSKGLSNPAE-----------VEALREKVY 170
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 171 ASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 227
>gi|291397512|ref|XP_002715914.1| PREDICTED: retinoid X receptor gamma [Oryctolagus cuniculus]
gi|262263191|dbj|BAI48098.1| retinoid X receptor, gamma [Sus scrofa]
Length = 340
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 63/166 (37%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + S+ G L+ + H F VL E K
Sbjct: 177 ILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMK 236
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N + + SE + ++
Sbjct: 237 DMQMDKSELGCLRAIVLF----------NPDAKGLSNPSE-----------VETLREKVY 275
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 276 ATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 321
>gi|323461809|dbj|BAJ76723.1| retinoid X receptor isoform 2 [Reishia clavigera]
Length = 447
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 64/168 (38%), Gaps = 28/168 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I G + + G L+ + H + F VL E +
Sbjct: 283 ILLRAGWNELLIGGFSHRSTQVTDGILLATGLHVHRSSAHQAGVGTIFDRVLTELVAKMR 342
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF + L+ V + ++
Sbjct: 343 EMKMDKTELGCLRAIVLFNPDAKG---------------------LQSVQEVEQLREKVY 381
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHN 246
L +Y YP +P RF K+ L LP L+SI LE LFF +IG
Sbjct: 382 ASLEEYCKQRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGQT 429
>gi|224983542|pdb|3E94|A Chain A, Crystal Structure Of Rxralpha Ligand Binding Domain In
Complex With Tributyltin And A Coactivator Fragment
gi|284055748|pdb|3KWY|A Chain A, Crystal Structure Of Rxralpha Ligand Binding Domain In
Complex With Triphenyltin And A Coactivator Fragment
Length = 244
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 70/178 (39%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 81 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 140
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N S + +E + A++
Sbjct: 141 DMQMDKTELGCLRAIVLF----------NPDSKGLSNPAE-----------VEALREKVY 179
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 180 ASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 236
>gi|157831763|pdb|1LBD|A Chain A, Ligand-Binding Domain Of The Human Nuclear Receptor
Rxr-Alpha
Length = 282
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 71/179 (39%), Gaps = 31/179 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 119 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 178
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHT 197
+ +D E +RAI LF +P+S L + + A++
Sbjct: 179 DMQMDKTELGCLRAIVLF----------------------NPDSKGLSNPAEVEALREKV 216
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 217 YASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 274
>gi|56967064|pdb|1XDK|A Chain A, Crystal Structure Of The RarbetaRXRALPHA LIGAND BINDING
Domain Heterodimer In Complex With 9-Cis Retinoic Acid
And A Fragment Of The Trap220 Coactivator
gi|56967068|pdb|1XDK|E Chain E, Crystal Structure Of The RarbetaRXRALPHA LIGAND BINDING
Domain Heterodimer In Complex With 9-Cis Retinoic Acid
And A Fragment Of The Trap220 Coactivator
Length = 238
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 70/178 (39%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNEF----K 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 75 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 134
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N S + +E + A++
Sbjct: 135 DMQMDKTELGCLRAIVLF----------NPDSKGLSNPAE-----------VEALREKVY 173
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 174 ASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 230
>gi|357380532|pdb|3PCU|A Chain A, Crystal Structure Of Human Retinoic X Receptor Alpha
Ligand-Binding Domain Complexed With Lx0278 And Src1
Peptide
Length = 230
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 70/178 (39%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNEF----K 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 71 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 130
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N S + +E + A++
Sbjct: 131 DMQMDKTELGCLRAIVLF----------NPDSKGLSNPAE-----------VEALREKVY 169
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 170 ASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 226
>gi|27819113|gb|AAO22211.1| retinoid X receptor alpha [Carassius auratus]
Length = 297
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 71/178 (39%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 134 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 193
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF D++ S+ + + A++
Sbjct: 194 DMQMDKTELGCLRAIVLFNP-------DSKGLSNPGE--------------VEALREKVY 232
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 233 ASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 289
>gi|61679483|pdb|1XV9|A Chain A, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid, And 5b-Pregnane-3,20-Dione.
gi|61679485|pdb|1XV9|C Chain C, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid, And 5b-Pregnane-3,20-Dione.
gi|61679491|pdb|1XVP|A Chain A, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid And Citco
gi|61679493|pdb|1XVP|C Chain C, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid And Citco
Length = 236
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 70/178 (39%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 73 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 132
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N S + +E + A++
Sbjct: 133 DMQMDKTELGCLRAIVLF----------NPDSKGLSNPAE-----------VEALREKVY 171
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 172 ASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 228
>gi|54026|emb|CAA46964.1| retinoid X receptor-gamma [Mus musculus]
Length = 463
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 74/180 (41%), Gaps = 33/180 (18%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELV--------ESCKSRHV-DIEEEVIRFQSVLNE 136
+LL W EL I + S+ G L+ S SR V I + V+ ++++
Sbjct: 300 ILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSRGVGSIFDRVL--TELVSK 357
Query: 137 FKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGH 196
K + +D E +RAI LF N + + SE + ++
Sbjct: 358 MKDMQMDKSELGCLRAIVLF----------NPDAKGLSNPSE-----------VETLREK 396
Query: 197 TQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 397 VYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDSFLMEM 455
>gi|156387699|ref|XP_001634340.1| predicted protein [Nematostella vectensis]
gi|156221422|gb|EDO42277.1| predicted protein [Nematostella vectensis]
Length = 391
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 75/179 (41%), Gaps = 39/179 (21%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHV---------------DIEEEVIR- 129
+LL W ELF L AQ+ + + S S D + ++
Sbjct: 194 VLLRSCWSELFTLNAAQHCSPFHISPTLTSNSSGFAGNGGGYLNTRVMSAFDCQNNNMKL 253
Query: 130 FQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVI 188
F+ + + K ++ID E+ ++AI LF +P+S L +
Sbjct: 254 FEEQVEKLKNMHIDSAEFACLKAIVLF----------------------NPDSQGLSEPA 291
Query: 189 AIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNT 247
+ +Q TQ L YI T YP+Q TRF K+ L LP L+ + + +E LFF + NT
Sbjct: 292 QVENLQDRTQSALEDYIRTQYPNQTTRFGKLLLRLPALRLLRPVSVENLFFSRLSMGNT 350
>gi|50539758|ref|NP_001002345.1| retinoic acid receptor RXR-gamma-B [Danio rerio]
gi|82200328|sp|Q6DHP9.1|RXRGB_DANRE RecName: Full=Retinoic acid receptor RXR-gamma-B; AltName:
Full=Nuclear receptor subfamily 2 group B member 3-B;
AltName: Full=Retinoid X receptor gamma-B
gi|49902731|gb|AAH75918.1| Zgc:92183 [Danio rerio]
gi|124054092|gb|ABM89230.1| retinoid X receptor gamma b [Danio rerio]
Length = 452
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 65/166 (39%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + ++ G L+ + H F VL E K
Sbjct: 289 ILLRAGWNELLIASFSHRSITVKDGILLGTGLHVHRSSAHSAGVGSIFNRVLTELVSKMK 348
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF D + S+S + + A++
Sbjct: 349 DMQMDKTELGCLRAIVLFN-------PDAKGLSNS--------------LEVEALREKVY 387
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 388 ASLETYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 433
>gi|449498088|ref|XP_002189453.2| PREDICTED: nuclear receptor subfamily 0 group B member 2-like
[Taeniopygia guttata]
Length = 297
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 77/180 (42%), Gaps = 39/180 (21%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEE------------------EV 127
+L+ ++W LF+LG+AQ DL E+ + + + + + EV
Sbjct: 123 VLIQQNWAPLFVLGMAQEGVDFDLREIPGTSLLKKILLNQSSTAMNKLDSSSAGASFTEV 182
Query: 128 IRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDV 187
+ +++L +F L+I EY Y++ I LF + H CL V
Sbjct: 183 QKMKNLLWKFWDLDISGKEYAYVKGIILFNSEC------------------HVLKCLPYV 224
Query: 188 IAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNT 247
++Q Q L ++I ++ +RF I ++ L+ I + +EELFFR + T
Sbjct: 225 ---QSLQQEAQKALMEFISIMFHGSLSRFTSILQLITSLRDIDAEAIEELFFRPFLEEAT 281
>gi|323461807|dbj|BAJ76722.1| retinoid X receptor isoform 1 [Reishia clavigera]
Length = 442
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 64/168 (38%), Gaps = 28/168 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I G + + G L+ + H + F VL E +
Sbjct: 278 ILLRAGWNELLIGGFSHRSTQVTDGILLATGLHVHRSSAHQAGVGTIFDRVLTELVAKMR 337
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF + L+ V + ++
Sbjct: 338 EMKMDKTELGCLRAIVLFNPDAKG---------------------LQSVQEVEQLREKVY 376
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHN 246
L +Y YP +P RF K+ L LP L+SI LE LFF +IG
Sbjct: 377 ASLEEYCKQRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGQT 424
>gi|58177375|pdb|1XLS|A Chain A, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
gi|58177376|pdb|1XLS|B Chain B, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
gi|58177377|pdb|1XLS|C Chain C, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
gi|58177378|pdb|1XLS|D Chain D, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
Length = 232
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 70/178 (39%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNEF----K 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 73 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 132
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N S + +E + A++
Sbjct: 133 DMQMDKTELGCLRAIVLF----------NPDSKGLSNPAE-----------VEALREKVY 171
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 172 ASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 228
>gi|13399885|pdb|1FM6|A Chain A, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Rosiglitazone And Co-Activator Peptides.
gi|13399887|pdb|1FM6|U Chain U, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Rosiglitazone And Co-Activator Peptides.
gi|13399893|pdb|1FM9|A Chain A, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Gi262570 And Co-Activator Peptides.
gi|14278179|pdb|1G5Y|A Chain A, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
gi|14278180|pdb|1G5Y|B Chain B, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
gi|14278181|pdb|1G5Y|C Chain C, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
gi|14278182|pdb|1G5Y|D Chain D, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
gi|14278313|pdb|1G1U|A Chain A, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
gi|14278314|pdb|1G1U|B Chain B, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
gi|14278315|pdb|1G1U|C Chain C, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
gi|14278316|pdb|1G1U|D Chain D, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
gi|17943020|pdb|1K74|A Chain A, The 2.3 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Ppargamma And Rxralpha Ligand
Binding Domains Respectively Bound With Gw409544 And
9-Cis Retinoic Acid And Co-Activator Peptides.
gi|78101296|pdb|2ACL|A Chain A, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
gi|78101298|pdb|2ACL|C Chain C, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
gi|78101300|pdb|2ACL|E Chain E, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
gi|78101302|pdb|2ACL|G Chain G, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
gi|321159910|pdb|3OZJ|A Chain A, Crystal Structure Of Human Retinoic X Receptor Alpha
Complexed With Bigelovin And Coactivator Src-1
gi|321159912|pdb|3OZJ|C Chain C, Crystal Structure Of Human Retinoic X Receptor Alpha
Complexed With Bigelovin And Coactivator Src-1
Length = 238
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 70/178 (39%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNEF----K 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 75 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 134
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N S + +E + A++
Sbjct: 135 DMQMDKTELGCLRAIVLF----------NPDSKGLSNPAE-----------VEALREKVY 173
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 174 ASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 230
>gi|384482349|pdb|3UVV|B Chain B, Crystal Structure Of The Ligand Binding Domains Of The
Thyroid Receptor:retinoid X Receptor Complexed With
3,3',5 Triiodo-L- Thyronine And 9-Cis Retinoic Acid
Length = 244
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 70/178 (39%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 79 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 138
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N S + +E + A++
Sbjct: 139 DMQMDKTELGCLRAIVLF----------NPDSKGLSNPAE-----------VEALREKVY 177
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 178 ASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 234
>gi|308198436|pdb|3A9E|A Chain A, Crystal Structure Of A Mixed Agonist-Bound Rar-Alpha And
Antagonist- Bound Rxr-Alpha Heterodimer Ligand Binding
Domains
Length = 240
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 70/178 (39%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNEF----K 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 77 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 136
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N S + +E + A++
Sbjct: 137 DMQMDKTELGCLRAIVLF----------NPDSKGLSNPAE-----------VEALREKVY 175
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 176 ASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 232
>gi|312208011|pdb|3OAP|A Chain A, Crystal Structure Of Human Retinoid X Receptor
Alpha-Ligand Binding Domain Complex With 9-Cis Retinoic
Acid And The Coactivator Peptide Grip-1
Length = 231
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 70/178 (39%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNEF----K 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 72 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 131
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N S + +E + A++
Sbjct: 132 DMQMDKTELGCLRAIVLF----------NPDSKGLSNPAE-----------VEALREKVY 170
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 171 ASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 227
>gi|51873224|gb|AAU12572.1| retinoid X receptor [Reishia clavigera]
Length = 431
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 65/168 (38%), Gaps = 28/168 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I G + + G L+ + H + F VL E +
Sbjct: 267 ILLRAGWNELLIGGFSHRSTQVTDGILLATGLHVHRSSAHQAGVGTIFDRVLTELVAKMR 326
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF D + L+ V + ++
Sbjct: 327 EMKMDKTELGCLRAIVLFNP-------DAKG--------------LQSVQEVEQLREKVY 365
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHN 246
L +Y YP +P RF K+ L LP L+SI LE LFF +IG
Sbjct: 366 ASLEEYCKQRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGQT 413
>gi|348505482|ref|XP_003440290.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like [Oreochromis
niloticus]
Length = 781
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 66/166 (39%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 618 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 677
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF D++ S+ + + A++
Sbjct: 678 DMQMDKTELGCLRAIVLFN-------PDSKGLSNPGE--------------VEALREKVY 716
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 717 ASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 762
>gi|211939465|pdb|3EYB|A Chain A, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
gi|211939466|pdb|3EYB|B Chain B, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
gi|211939467|pdb|3EYB|C Chain C, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
gi|211939468|pdb|3EYB|D Chain D, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
Length = 219
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 71/179 (39%), Gaps = 31/179 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNEF----K 138
+LL W EL I + + G L+ S H + F VL E +
Sbjct: 63 ILLRAGWNELLIAAFSHRSIDVKDGILLASGLHVHRSSAHQAGVGTIFDRVLTELVAKMR 122
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHT 197
+ +D E +RAI LF +P++ L D + +++
Sbjct: 123 DMKMDKTELGCLRAIVLF----------------------NPDAKGLTDPSLVESLREKV 160
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L +Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 161 YASLEEYCKQQYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 218
>gi|9955002|pdb|1FBY|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To 9-Cis Retinoic Acid
gi|9955003|pdb|1FBY|B Chain B, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To 9-Cis Retinoic Acid
Length = 239
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 70/178 (39%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNEF----K 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 76 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 135
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N S + +E + A++
Sbjct: 136 DMQMDKTELGCLRAIVLF----------NPDSKGLSNPAE-----------VEALREKVY 174
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 175 ASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 231
>gi|397503782|ref|XP_003822498.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Pan paniscus]
gi|402896147|ref|XP_003911168.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Papio anubis]
gi|410043384|ref|XP_520345.4| PREDICTED: retinoic acid receptor RXR-alpha [Pan troglodytes]
gi|193785958|dbj|BAG54745.1| unnamed protein product [Homo sapiens]
Length = 365
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 71/179 (39%), Gaps = 31/179 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 202 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 261
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHT 197
+ +D E +RAI LF +P+S L + + A++
Sbjct: 262 DMQMDKTELGCLRAIVLF----------------------NPDSKGLSNPAEVEALREKV 299
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 300 YASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 357
>gi|56965939|pdb|1RDT|A Chain A, Crystal Structure Of A New Rexinoid Bound To The Rxralpha
Ligand Binding Doamin In The RxralphaPPARGAMMA
HETERODIMER
gi|223365895|pdb|3FC6|A Chain A, Hrxralpha & Mlxralpha With An Indole Pharmacophore,
Sb786875
gi|223365897|pdb|3FC6|C Chain C, Hrxralpha & Mlxralpha With An Indole Pharmacophore,
Sb786875
gi|226887770|pdb|3FAL|A Chain A, Humanrxr Alpha & Mouse Lxr Alpha Complexed With Retenoic
Acid And Gsk2186
gi|226887772|pdb|3FAL|C Chain C, Humanrxr Alpha & Mouse Lxr Alpha Complexed With Retenoic
Acid And Gsk2186
Length = 242
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 70/178 (39%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 79 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 138
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N S + +E + A++
Sbjct: 139 DMQMDKTELGCLRAIVLF----------NPDSKGLSNPAE-----------VEALREKVY 177
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 178 ASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 234
>gi|347360574|emb|CCA61270.1| retinoid X receptor, isoform M [Lithobius peregrinus]
Length = 320
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 49/119 (41%), Gaps = 26/119 (21%)
Query: 130 FQSVLNE----FKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLR 185
F VL E + + +D E +RAI LF +P LR
Sbjct: 221 FDRVLTELVAKMREMKMDRTELGCLRAIILF----------------------NPVKGLR 258
Query: 186 DVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
I +++ L +Y YP +P RF K+ L LP L+SI LE LFF +IG
Sbjct: 259 SSQVIESLRERVYAALEEYCKQQYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 317
>gi|24987814|pdb|1MV9|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To The Eicosanoid Dha (Docosa Hexaenoic
Acid) And A Coactivator Peptide
gi|24987816|pdb|1MVC|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To The Synthetic Agonist Compound Bms 649
And A Coactivator Peptide
gi|24987862|pdb|1MZN|A Chain A, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
gi|24987864|pdb|1MZN|C Chain C, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
gi|24987866|pdb|1MZN|E Chain E, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
gi|24987868|pdb|1MZN|G Chain G, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
gi|158429278|pdb|2P1T|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Retinoid X Receptor Alpha In Complex With
3-(2'-Methoxy)- Tetrahydronaphtyl Cinnamic Acid And A
Fragment Of The Coactivator Tif-2
gi|158429280|pdb|2P1U|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Retinoid X Receptor Alpha In Complex With 3-(2'-Ethoxy)-
Tetrahydronaphtyl Cinnamic Acid And A Fragment Of The
Coactivator Tif-2
gi|158429282|pdb|2P1V|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Retinoid X Receptor Alpha In Complex With
3-(2'-Propoxy)- Tetrahydronaphtyl Cinnamic Acid And A
Fragment Of The Coactivator Tif-2
gi|237640540|pdb|3FUG|A Chain A, Crystal Structure Of The Retinoid X Receptor Ligand
Binding Domain Bound To The Synthetic Agonist
3-[4-Hydroxy-3-(3,5,
5,8,8-Pentamethyl-5,6,7,8-Tetrahydronaphthalen-2-Yl)-
Phenyl]acrylic Acid
gi|255917832|pdb|2ZXZ|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To A Synthetic Agonist Compound And A
Coactivator Peptide
gi|255917834|pdb|2ZY0|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To A Synthetic Agonist Compound And A
Coactivator Peptide
gi|255917836|pdb|2ZY0|C Chain C, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To A Synthetic Agonist Compound And A
Coactivator Peptide
gi|312207941|pdb|3NSP|A Chain A, Crystal Structure Of Tetrameric Rxralpha-Lbd
gi|312207942|pdb|3NSP|B Chain B, Crystal Structure Of Tetrameric Rxralpha-Lbd
gi|312207943|pdb|3NSQ|A Chain A, Crystal Structure Of Tetrameric Rxralpha-Lbd Complexed
With Antagonist Danthron
gi|312207944|pdb|3NSQ|B Chain B, Crystal Structure Of Tetrameric Rxralpha-Lbd Complexed
With Antagonist Danthron
gi|333944482|pdb|3R29|A Chain A, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2
gi|333944483|pdb|3R29|B Chain B, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2
gi|333944486|pdb|3R2A|A Chain A, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
gi|333944487|pdb|3R2A|B Chain B, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
gi|333944488|pdb|3R2A|C Chain C, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
gi|333944489|pdb|3R2A|D Chain D, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
gi|374977596|pdb|3R5M|A Chain A, Crystal Structure Of Rxralphalbd Complexed With The
Agonist Magnolol
gi|374977598|pdb|3R5M|C Chain C, Crystal Structure Of Rxralphalbd Complexed With The
Agonist Magnolol
Length = 240
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 70/178 (39%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNEF----K 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 77 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 136
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N S + +E + A++
Sbjct: 137 DMQMDKTELGCLRAIVLF----------NPDSKGLSNPAE-----------VEALREKVY 175
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 176 ASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 232
>gi|395530718|ref|XP_003767435.1| PREDICTED: retinoic acid receptor RXR-gamma [Sarcophilus harrisii]
Length = 470
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 64/166 (38%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + ++ G L+ + H F VL E K
Sbjct: 307 ILLRAGWNELLIASFSHRSVTVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMK 366
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N + + SE + A++
Sbjct: 367 DMQMDKSELGCLRAIVLF----------NPDAKGLSNPSE-----------VEALREKVY 405
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 406 ATLEAYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 451
>gi|225001482|gb|ACN78601.1| retinoid X receptor 1 [Fenneropenaeus chinensis]
Length = 442
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 67/167 (40%), Gaps = 30/167 (17%)
Query: 86 LLLAESWRELFI-------LGLAQYLPSLDLGELVESCKSRHVDIEEEVIRFQS-VLNEF 137
+LL W EL I +G+ + L G +V + H + + R S ++ +
Sbjct: 275 ILLKAGWNELLIASFSHRSMGVKDGI-VLATGLVVHRSSAHHAGVGDIFDRVLSELVAKM 333
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
K + +D E +R+I LF ++ L I ++
Sbjct: 334 KEMKMDKTELGCLRSIVLFNPDVKG---------------------LSACETIEVLREKV 372
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L +Y T YP QP RF K+ L LP L+SI LE LF ++G
Sbjct: 373 YATLEEYTRTSYPDQPGRFAKLLLRLPALRSIGLKCLEYLFLFKLLG 419
>gi|3929579|gb|AAC80008.1| retinoic acid X receptor [Tripedalia cystophora]
Length = 435
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 36/170 (21%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELV--------ESCKSRHVDIEEEVIRFQSVLNEF 137
+LL SW EL I G ++ G L+ ++ K V + I F V+ +
Sbjct: 274 VLLQWSWPELLIGGFCHRSCAVKDGILLSTGLHLTRDNLKKAGVGAIIDKI-FSEVIEKM 332
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ + +D E+ +RAI LF P++ + + AI ++ +
Sbjct: 333 QEIQMDRAEWGCLRAIMLFS----------------------PDA--KGLTAIDQVENYR 368
Query: 198 QIF---LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
+++ L ++ +P QP RF K+ L +P LKSI LE L+F +IG
Sbjct: 369 ELYTSTLEDHVKRKHPEQPDRFTKVILRIPALKSIGLQALEHLYFFKLIG 418
>gi|410950838|ref|XP_003982110.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Felis
catus]
Length = 263
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
Query: 180 PESC-LRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELF 238
P++C L D + ++Q Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LF
Sbjct: 172 PDACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLF 231
Query: 239 FRNIIGHNTTIKKTIWHM 256
F ++G T I+ I M
Sbjct: 232 FMRLVG-KTPIETLIRDM 248
>gi|347360572|emb|CCA61269.1| retinoid X receptor, isoform L [Lithobius peregrinus]
Length = 326
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 49/119 (41%), Gaps = 26/119 (21%)
Query: 130 FQSVLNE----FKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLR 185
F VL E + + +D E +RAI LF +P LR
Sbjct: 227 FDRVLTELVAKMREMKMDRTELGCLRAIILF----------------------NPVKGLR 264
Query: 186 DVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
I +++ L +Y YP +P RF K+ L LP L+SI LE LFF +IG
Sbjct: 265 SSQVIESLRERVYAALEEYCKQQYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 323
>gi|225001484|gb|ACN78602.1| retinoid X receptor 2 [Fenneropenaeus chinensis]
Length = 437
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 67/167 (40%), Gaps = 30/167 (17%)
Query: 86 LLLAESWRELFI-------LGLAQYLPSLDLGELVESCKSRHVDIEEEVIRFQS-VLNEF 137
+LL W EL I +G+ + L G +V + H + + R S ++ +
Sbjct: 270 ILLKAGWNELLIASFSHRSMGVKDGI-VLATGLVVHRSSAHHAGVGDIFDRVLSELVAKM 328
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
K + +D E +R+I LF ++ L I ++
Sbjct: 329 KEMKMDKTELGCLRSIVLFNPDVKG---------------------LSACETIEVLREKV 367
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L +Y T YP QP RF K+ L LP L+SI LE LF ++G
Sbjct: 368 YATLEEYTRTSYPDQPGRFAKLLLRLPALRSIGLKCLEYLFLFKLLG 414
>gi|432888946|ref|XP_004075101.1| PREDICTED: retinoic acid receptor RXR-alpha-A [Oryzias latipes]
Length = 471
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 66/166 (39%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 308 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 367
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF D++ S+ + + A++
Sbjct: 368 DMQMDKTELGCLRAIVLFNP-------DSKGLSNPGE--------------VEALREKVY 406
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 407 ASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 452
>gi|395741153|ref|XP_002820405.2| PREDICTED: retinoic acid receptor RXR-alpha-like [Pongo abelii]
Length = 318
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 71/179 (39%), Gaps = 31/179 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 155 ILLRAGWNELLIASFSNRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 214
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHT 197
+ +D E +RAI LF +P+S L + + A++
Sbjct: 215 DMQMDKTELGCLRAIVLF----------------------NPDSKGLSNPAEVEALREKV 252
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 253 YASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 310
>gi|301611491|ref|XP_002935274.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Xenopus
(Silurana) tropicalis]
Length = 459
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 65/166 (39%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 296 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 355
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N S + SE + A++
Sbjct: 356 DMQMDKTELGCLRAIVLF----------NPDSKGLSNPSE-----------VEALREKVY 394
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 395 ASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 440
>gi|7766906|pdb|1DKF|A Chain A, Crystal Structure Of A Heterodimeric Complex Of Rar And
Rxr Ligand-Binding Domains
Length = 233
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 70/178 (39%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 75 ILLRAGWNELLIASASHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 134
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N S + +E + A++
Sbjct: 135 DMQMDKTELGCLRAIVLF----------NPDSKGLSNPAE-----------VEALREKVY 173
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 174 ASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 230
>gi|334321961|ref|XP_001370409.2| PREDICTED: retinoic acid receptor RXR-gamma-like [Monodelphis
domestica]
Length = 473
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 63/166 (37%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + S+ G L+ + H F VL E K
Sbjct: 310 ILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMK 369
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N + + SE + ++
Sbjct: 370 DMQMDKSELGCLRAIVLF----------NPDAKGLSNPSE-----------VEGLREKVY 408
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 409 ATLEAYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 454
>gi|68132036|gb|AAY85284.1| RXRalpha-B [Danio rerio]
Length = 365
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 66/166 (39%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 202 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 261
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF D++ S+ + + A++
Sbjct: 262 DMQMDKTELGCLRAIVLFNP-------DSKGLSNPGE--------------VEALREKVY 300
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 301 ASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 346
>gi|444518523|gb|ELV12209.1| Retinoic acid receptor RXR-alpha [Tupaia chinensis]
Length = 386
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 71/179 (39%), Gaps = 31/179 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 223 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 282
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHT 197
+ +D E +RAI LF +P+S L + + A++
Sbjct: 283 DMQMDKTELGCLRAIVLF----------------------NPDSKGLSNPAEVEALREKV 320
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 321 YASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 378
>gi|301755064|ref|XP_002913407.1| PREDICTED: nuclear receptor subfamily 0 group B member 2-like
[Ailuropoda melanoleuca]
Length = 279
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 69/177 (38%), Gaps = 40/177 (22%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGE----------LVESCKSRHVDIE---------EEV 127
LL W LF+LGLAQ + ++ E L+E +SR + V
Sbjct: 90 LLRGCWGPLFLLGLAQDAVTFEVAEAPVPSILKKILLEEPRSRAGSGQLPDRPQPSLAAV 149
Query: 128 IRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDV 187
Q L F L + P EY Y++ +F +V +SS
Sbjct: 150 QWLQCCLESFWSLKLGPKEYAYLKETIIFNP----DVPGLHASSH--------------- 190
Query: 188 IAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
I +Q + L + + P+ R ++ L LKSIP +L +LFFR IIG
Sbjct: 191 --IGHLQQEARHALCEVLEPGRPAGQGRVARVLLTASTLKSIPPSLLGDLFFRPIIG 245
>gi|21310111|gb|AAM46151.1|AF378829_1 nuclear hormone receptor RXR [Branchiostoma floridae]
Length = 522
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 70/183 (38%), Gaps = 29/183 (15%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + + G L+ S H + F VL E +
Sbjct: 328 ILLRAGWNELLIAAFSHRSIDVKDGILLASGLHVHRSSAHQAGVGTIFDRVLTELVAKMR 387
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF + L D + +++
Sbjct: 388 DMKMDKTELGCLRAIVLFNPDAKG---------------------LTDPSLVESLREKVY 426
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 258
L +Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M +
Sbjct: 427 ASLEEYCKQQYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEMLE 485
Query: 259 NAG 261
G
Sbjct: 486 APG 488
>gi|444730607|gb|ELW70985.1| Retinoic acid receptor RXR-gamma [Tupaia chinensis]
Length = 425
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 68/178 (38%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + S+ G L+ + H F VL E K
Sbjct: 262 ILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMK 321
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N + + SE + ++
Sbjct: 322 DMQMDKSELGCLRAIVLF----------NPDAKGLSNPSE-----------VETLREKVY 360
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 361 ATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 417
>gi|281351608|gb|EFB27192.1| hypothetical protein PANDA_001162 [Ailuropoda melanoleuca]
Length = 259
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 69/177 (38%), Gaps = 40/177 (22%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGE----------LVESCKSRHVDIE---------EEV 127
LL W LF+LGLAQ + ++ E L+E +SR + V
Sbjct: 90 LLRGCWGPLFLLGLAQDAVTFEVAEAPVPSILKKILLEEPRSRAGSGQLPDRPQPSLAAV 149
Query: 128 IRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDV 187
Q L F L + P EY Y++ +F +V +SS
Sbjct: 150 QWLQCCLESFWSLKLGPKEYAYLKETIIFNP----DVPGLHASSH--------------- 190
Query: 188 IAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
I +Q + L + + P+ R ++ L LKSIP +L +LFFR IIG
Sbjct: 191 --IGHLQQEARHALCEVLEPGRPAGQGRVARVLLTASTLKSIPPSLLGDLFFRPIIG 245
>gi|432856175|ref|XP_004068390.1| PREDICTED: retinoic acid receptor RXR-gamma-B [Oryzias latipes]
Length = 455
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 69/178 (38%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + ++ G L+ + H F VL E K
Sbjct: 292 ILLRAGWNELLIASFSHRSVTVKDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMK 351
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N + + SE + A++
Sbjct: 352 DMQMDKTELGCLRAIVLF----------NPDAKGLSNPSE-----------VEALREKVY 390
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 391 ASLEAYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 447
>gi|121484053|gb|ABM54354.1| NR2E1 [Pan paniscus]
Length = 53
Score = 45.4 bits (106), Expect = 0.022, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 209 YPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 260
YP+QP RF K+ L+LP L+SI +EE+FF+ IG N I + + MYK++
Sbjct: 1 YPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIG-NVPITRLLSDMYKSS 51
>gi|216409720|dbj|BAH02297.1| retinoid X receptor-gamma [Homo sapiens]
Length = 463
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 68/178 (38%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + S+ G L+ + H F VL E K
Sbjct: 300 ILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMK 359
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N + + SE + ++
Sbjct: 360 DMQMDKSELGCLRAIVLF----------NPDAKGLSNPSE-----------VETLREKVY 398
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 399 ATLGAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 455
>gi|74902124|sp|Q5I7G2.1|RXR_LYMST RecName: Full=Retinoic acid receptor RXR; AltName: Full=Retinoid X
receptor; Short=LymRXR
gi|57164664|gb|AAW34268.1| retinoid X receptor [Lymnaea stagnalis]
Length = 436
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 64/172 (37%), Gaps = 40/172 (23%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I G + G L+ + H + F VL E +
Sbjct: 273 ILLRAGWNELLIAGFSHRSIMAKDGILLATGLHVHRSSAHQAGVGTIFDRVLTELVAKMR 332
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RA+ LF D + A+Q Q
Sbjct: 333 EMKMDKTELGCLRAVVLFNP---------------------------DAKGLTAVQEVEQ 365
Query: 199 I------FLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
+ L +Y T YP +P RF K+ L LP L+SI LE LFF +IG
Sbjct: 366 LREKVYASLEEYTKTRYPEEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 417
>gi|410903442|ref|XP_003965202.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like [Takifugu
rubripes]
Length = 447
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 64/166 (38%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + + G L+ + H + F VL E +
Sbjct: 284 ILLRAGWNELLIASFSHRSIGIKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 343
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N S + SE + A++
Sbjct: 344 DMQMDKTELGCLRAIVLF----------NPDSKGLSNPSE-----------VEALREKVY 382
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 383 ASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 428
>gi|296481981|tpg|DAA24096.1| TPA: retinoid X receptor, alpha [Bos taurus]
Length = 404
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 71/179 (39%), Gaps = 31/179 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 241 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 300
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHT 197
+ +D E +RAI LF +P+S L + + A++
Sbjct: 301 DMQMDKTELGCLRAIVLF----------------------NPDSKGLSNPAEVEALREKV 338
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 339 YASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 396
>gi|441623802|ref|XP_003279685.2| PREDICTED: retinoic acid receptor RXR-alpha [Nomascus leucogenys]
Length = 418
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 65/166 (39%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 255 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 314
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N S + +E + A++
Sbjct: 315 DMQMDKTELGCLRAIVLF----------NPDSKGLSNPAE-----------VEALREKVY 353
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 354 ASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 399
>gi|269854075|gb|ACZ51263.1| Dax1 [Cynoglossus semilaevis]
Length = 298
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 79/195 (40%), Gaps = 47/195 (24%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVE---------SCKSRHVD-------------- 122
+L+ W L +LGLAQ + E VE RH +
Sbjct: 125 VLIRSGWAPLLVLGLAQDRVDFETTETVEPSMLQRILTGLPERHSEPVAGHGHGAVGVSV 184
Query: 123 IEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES 182
+E E I+ + L + ++I EY Y++ LF +E
Sbjct: 185 VEIEAIK--AFLKKCWSVDISTKEYAYLKGAVLFNPDLEG-------------------- 222
Query: 183 CLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNI 242
LR + I +++ L ++I ++ TRF K+ + L L+SI LV+ +LFFR +
Sbjct: 223 -LRCLHYIQSLRREAHQALKEHIRLIHREDTTRFAKLLIALSMLRSISPLVVAQLFFRPV 281
Query: 243 IGHNTTIKKTIWHMY 257
IG I++ + M+
Sbjct: 282 IG-TVNIEEVLMEMF 295
>gi|348574546|ref|XP_003473051.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Cavia porcellus]
Length = 549
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 66/167 (39%), Gaps = 30/167 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 386 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 445
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHT 197
+ +D E +RAI LF +P+S L + + A++
Sbjct: 446 DMQMDKTELGCLRAIVLF----------------------NPDSKGLSNPAEVEALREKV 483
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 484 YASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 530
>gi|149410285|ref|XP_001506054.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Ornithorhynchus
anatinus]
Length = 433
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 71/179 (39%), Gaps = 31/179 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 270 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 329
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHT 197
+ +D E +RAI LF +P+S L + + A++
Sbjct: 330 DMQMDKTELGCLRAIVLF----------------------NPDSKGLSNPAEVEALREKV 367
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 368 YASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 425
>gi|16580815|dbj|BAB71758.1| retinoid X receptor alpha [Paralichthys olivaceus]
Length = 292
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 48/119 (40%), Gaps = 25/119 (21%)
Query: 130 FQSVLNE----FKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLR 185
F VL E K + +D E +RAI LF + + S PE
Sbjct: 189 FDRVLTELVSKMKDMQMDKTELGCLRAIVLF-------------NPDAKGLSNPPE---- 231
Query: 186 DVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
+ ++ L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 232 ----VEGLREKVYASLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 286
>gi|121484125|gb|ABM54405.1| NR0B2 [Pan paniscus]
gi|124111348|gb|ABM92081.1| NR0B2 [Pan troglodytes]
Length = 186
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 64/177 (36%), Gaps = 40/177 (22%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEE-------------------V 127
LL W LF+LGLAQ + ++ E + + +EE V
Sbjct: 16 LLQGCWGPLFLLGLAQDAVTFEVAEAPVPSILKKILLEEPSSSGGSGQLPDRPQPSLAAV 75
Query: 128 IRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDV 187
Q L F L + P EY ++ LF + L+
Sbjct: 76 QWLQCCLESFWSLELSPKEYACLKGTILFNPDVPG---------------------LQAA 114
Query: 188 IAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
I +Q L + + P+ R ++ L LKSIP+ +L +LFFR IIG
Sbjct: 115 SHIGHLQQEAHWALCEVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPIIG 171
>gi|28628006|gb|AAO18151.1| USP-RXR [Lithobius forficatus]
Length = 305
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 49/119 (41%), Gaps = 26/119 (21%)
Query: 130 FQSVLNE----FKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLR 185
F VL E + + +D E +RAI LF +P LR
Sbjct: 207 FDRVLTELVAKMREMKMDRTELGCLRAIILF----------------------NPVKGLR 244
Query: 186 DVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
I +++ L +Y YP +P RF K+ L LP L+SI LE LFF +IG
Sbjct: 245 SSQVIESLRERVYATLEEYCKQHYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 303
>gi|327276463|ref|XP_003222989.1| PREDICTED: retinoic acid receptor RXR-alpha-like, partial [Anolis
carolinensis]
Length = 451
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 66/167 (39%), Gaps = 30/167 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 288 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 347
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHT 197
+ +D E +RAI LF +P+S L + + A++
Sbjct: 348 DMQMDKTELGCLRAIVLF----------------------NPDSKGLSNPAEVEALREKV 385
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 386 YASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 432
>gi|299773487|gb|ADJ38818.1| orphan nuclear receptor Dax-1 [Salmo salar]
Length = 295
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 74/185 (40%), Gaps = 47/185 (25%)
Query: 86 LLLAESWRELFILGLAQ----------YLPSLDLGELVESCKS------RHVDIEE---- 125
LL+ W L +LGLAQ PS+ L C S R V+ E+
Sbjct: 117 LLVRNGWVPLLVLGLAQDRVDFETTETAEPSMLQRILTGGCVSQGSLMDRQVEPEQSAGT 176
Query: 126 ------EVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEH 179
++ ++ L + L+I EY Y++ LF S+
Sbjct: 177 PGVSLADIQGIKAFLKKCWGLDISTKEYAYLKGAVLFN-------------------SDL 217
Query: 180 PESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFF 239
P C + I + H LN+Y+ ++ TRF K+ + L L++I V+ +LFF
Sbjct: 218 PGLCYLNYIQSLRREAHQA--LNEYVKLIHRDDATRFAKLLIALAMLRAISPPVVAQLFF 275
Query: 240 RNIIG 244
+ IIG
Sbjct: 276 KPIIG 280
>gi|61364969|gb|AAX42633.1| nuclear receptor subfamily 0 group B member 2 [synthetic construct]
Length = 258
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 64/177 (36%), Gaps = 40/177 (22%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEE-------------------V 127
LL W LF+LGLAQ + ++ E + + +EE V
Sbjct: 87 LLQGCWGPLFLLGLAQDAVTFEVAEAPVPSILKKILLEEPSSSGGSGQLPDRPQPSLAAV 146
Query: 128 IRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDV 187
Q L F L + P EY ++ LF + L+
Sbjct: 147 QWLQCCLESFWSLELSPKEYACLKGTILFNPDVPG---------------------LQAA 185
Query: 188 IAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
I +Q L + + P+ R ++ L LKSIP+ +L +LFFR IIG
Sbjct: 186 SHIGHLQQEAHWVLCEVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPIIG 242
>gi|311258764|ref|XP_003127768.1| PREDICTED: nuclear receptor subfamily 0 group B member 2-like [Sus
scrofa]
Length = 260
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 68/177 (38%), Gaps = 40/177 (22%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEE-------------------V 127
LL W LF+LGLAQ + + ++ E+ + + +EE V
Sbjct: 90 LLRGCWGPLFLLGLAQDIVTFEVAEVPVPSILKKILLEEPSSGAGSGQPLDRPQPSLAAV 149
Query: 128 IRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDV 187
Q L L + P EY Y++ LF +V +SS
Sbjct: 150 QWLQCCLESLWSLELGPKEYAYLKGTILFNP----DVPGLYASSH--------------- 190
Query: 188 IAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
I +Q L + + P+ +R ++ L LKSIP +L +LFFR +IG
Sbjct: 191 --IGHLQHEAHQALWEVLEPWCPAGQSRLARVLLAASTLKSIPPTLLGDLFFRPVIG 245
>gi|410986573|ref|XP_003999584.1| PREDICTED: retinoic acid receptor RXR-gamma [Felis catus]
Length = 463
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 68/178 (38%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + S+ G L+ + H F VL E K
Sbjct: 300 ILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMK 359
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N + + SE + ++
Sbjct: 360 DMQMDKAELGCLRAIVLF----------NPDAKGLSNPSE-----------VETLREKVY 398
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 399 ATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 455
>gi|363740474|ref|XP_003642339.1| PREDICTED: retinoic acid receptor RXR-alpha [Gallus gallus]
Length = 467
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 71/179 (39%), Gaps = 31/179 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 304 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 363
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHT 197
+ +D E +RAI LF +P+S L + + A++
Sbjct: 364 DMQMDKTELGCLRAIVLF----------------------NPDSKGLSNPAEVEALREKV 401
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 402 YASLEAYCKHKYPDQPGRFAKLLLRLPALRSISLKCLEHLFFFKLIG-DTPIDTFLMEM 459
>gi|260828819|ref|XP_002609360.1| hypothetical protein BRAFLDRAFT_236165 [Branchiostoma floridae]
gi|229294716|gb|EEN65370.1| hypothetical protein BRAFLDRAFT_236165 [Branchiostoma floridae]
Length = 427
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 68/178 (38%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + + G L+ S H + F VL E +
Sbjct: 268 ILLRAGWNELLIAAFSHRSIDVKDGILLASGLHVHRSSAHQAGVGTIFDRVLTELVAKMR 327
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF + L D + +++
Sbjct: 328 DMKMDKTELGCLRAIVLFNPDAKG---------------------LTDPSLVESLREKVY 366
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L +Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 367 ASLEEYCKQQYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 423
>gi|9931482|gb|AAG02188.1| retinoid-X-receptor [Cloning vector pFB-ERV]
Length = 472
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 71/179 (39%), Gaps = 31/179 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 309 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 368
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHT 197
+ +D E +RAI LF +P+S L + + A++
Sbjct: 369 DMQMDKTELGCLRAIVLF----------------------NPDSKGLSNPAEVEALREKV 406
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 407 YASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 464
>gi|395506404|ref|XP_003757522.1| PREDICTED: retinoic acid receptor RXR-alpha [Sarcophilus harrisii]
Length = 468
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 66/167 (39%), Gaps = 30/167 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 305 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 364
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHT 197
+ +D E +RAI LF +P+S L + + A++
Sbjct: 365 DMQMDKTELGCLRAIVLF----------------------NPDSKGLSNPAEVEALREKV 402
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 403 YASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 449
>gi|431898965|gb|ELK07335.1| Retinoic acid receptor RXR-alpha [Pteropus alecto]
Length = 439
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 71/178 (39%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 276 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 335
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+++D E +RAI LF D++ L + + A++
Sbjct: 336 DMHMDKTELGCLRAIVLFNP-------DSKG--------------LSNPAEVEALREKVY 374
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 375 ASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 431
>gi|426332559|ref|XP_004027871.1| PREDICTED: retinoic acid receptor RXR-gamma [Gorilla gorilla
gorilla]
Length = 463
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 68/178 (38%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + S+ G L+ + H F VL E K
Sbjct: 300 ILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMK 359
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N + + SE + ++
Sbjct: 360 DMQMDKSELGCLRAIVLF----------NPDAKGLSNPSE-----------VETLREKVY 398
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 399 ATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 455
>gi|417515778|gb|JAA53699.1| retinoic acid receptor RXR-alpha [Sus scrofa]
Length = 467
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 71/179 (39%), Gaps = 31/179 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 304 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 363
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHT 197
+ +D E +RAI LF +P+S L + + A++
Sbjct: 364 DMQMDKTELGCLRAIVLF----------------------NPDSKGLSNPAEVEALREKV 401
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 402 YASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 459
>gi|358414696|ref|XP_887036.4| PREDICTED: retinoic acid receptor RXR-alpha isoform 4 [Bos taurus]
Length = 557
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 65/166 (39%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 394 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 453
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF D++ L + + A++
Sbjct: 454 DMQMDKTELGCLRAIVLFN-------PDSKG--------------LSNPAEVEALREKVY 492
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 493 ASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 538
>gi|326930478|ref|XP_003211374.1| PREDICTED: LOW QUALITY PROTEIN: retinoic acid receptor
RXR-alpha-like [Meleagris gallopavo]
Length = 497
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 66/167 (39%), Gaps = 30/167 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 334 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 393
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHT 197
+ +D E +RAI LF +P+S L + + A++
Sbjct: 394 DMQMDKTELGCLRAIVLF----------------------NPDSKGLSNPAEVEALREKV 431
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 432 YASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 478
>gi|13259503|ref|NP_068804.1| nuclear receptor subfamily 0 group B member 2 [Homo sapiens]
gi|9978744|sp|Q15466.2|NR0B2_HUMAN RecName: Full=Nuclear receptor subfamily 0 group B member 2;
AltName: Full=Orphan nuclear receptor SHP; AltName:
Full=Small heterodimer partner
gi|15787843|dbj|BAB68530.1| small heterodimer partner [Homo sapiens]
gi|20987404|gb|AAH30207.1| Nuclear receptor subfamily 0, group B, member 2 [Homo sapiens]
gi|60812464|gb|AAX36213.1| nuclear receptor subfamily 0 group B member 2 [synthetic construct]
gi|61354784|gb|AAX41058.1| nuclear receptor subfamily 0 group B member 2 [synthetic construct]
gi|119628186|gb|EAX07781.1| nuclear receptor subfamily 0, group B, member 2 [Homo sapiens]
gi|325495477|gb|ADZ17344.1| nuclear receptor SHP [Homo sapiens]
Length = 257
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 64/177 (36%), Gaps = 40/177 (22%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEE-------------------V 127
LL W LF+LGLAQ + ++ E + + +EE V
Sbjct: 87 LLQGCWGPLFLLGLAQDAVTFEVAEAPVPSILKKILLEEPSSSGGSGQLPDRPQPSLAAV 146
Query: 128 IRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDV 187
Q L F L + P EY ++ LF + L+
Sbjct: 147 QWLQCCLESFWSLELSPKEYACLKGTILFNPDVPG---------------------LQAA 185
Query: 188 IAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
I +Q L + + P+ R ++ L LKSIP+ +L +LFFR IIG
Sbjct: 186 SHIGHLQQEAHWVLCEVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPIIG 242
>gi|4003528|gb|AAC95154.1| retinoic acid receptor RXR [Cloning vector pERV3]
Length = 479
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 71/179 (39%), Gaps = 31/179 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 316 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 375
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHT 197
+ +D E +RAI LF +P+S L + + A++
Sbjct: 376 DMQMDKTELGCLRAIVLF----------------------NPDSKGLSNPAEVEALREKV 413
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 414 YASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 471
>gi|74209898|dbj|BAE21258.1| unnamed protein product [Mus musculus]
Length = 115
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 53/124 (42%), Gaps = 22/124 (17%)
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
++++ K + +D E +RAI LF N + + SE +
Sbjct: 6 LVSKMKDMQMDKSELGCLRAIVLF----------NPDAKGLSNPSE-----------VET 44
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
++ L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I
Sbjct: 45 LREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDSF 103
Query: 253 IWHM 256
+ M
Sbjct: 104 LMEM 107
>gi|410222730|gb|JAA08584.1| retinoid X receptor, alpha [Pan troglodytes]
gi|410251064|gb|JAA13499.1| retinoid X receptor, alpha [Pan troglodytes]
gi|410306614|gb|JAA31907.1| retinoid X receptor, alpha [Pan troglodytes]
gi|410353913|gb|JAA43560.1| retinoid X receptor, alpha [Pan troglodytes]
Length = 462
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 71/179 (39%), Gaps = 31/179 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 299 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 358
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHT 197
+ +D E +RAI LF +P+S L + + A++
Sbjct: 359 DMQMDKTELGCLRAIVLF----------------------NPDSKGLSNPAEVEALREKV 396
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 397 YASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 454
>gi|395854776|ref|XP_003799855.1| PREDICTED: nuclear receptor subfamily 0 group B member 2 [Otolemur
garnettii]
Length = 257
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 69/177 (38%), Gaps = 40/177 (22%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEE------------------VI 128
LL W LF+LGLAQ + ++ E + + +EE +
Sbjct: 87 LLQGGWGPLFLLGLAQDTVTFEVAEAPVPSILKKILLEEPGSSRGGSQLPDRPQPSLAAV 146
Query: 129 RF-QSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDV 187
R+ Q L L + P EY Y++ LF + ++ ++SS
Sbjct: 147 RWLQCCLESLWNLELGPKEYAYLKGTILFNS----DLPGLQASSH--------------- 187
Query: 188 IAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
I +Q L + + P+ R ++ L LKSIP +L +LFFR IIG
Sbjct: 188 --IGHLQQEAHWALCEVLEPWCPAGQGRLARVLLTASTLKSIPPSLLRDLFFRPIIG 242
>gi|32169341|emb|CAD99183.1| retinoid X receptor [Dicentrarchus labrax]
Length = 274
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 68/177 (38%), Gaps = 29/177 (16%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FKV 139
LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 119 LLRAGWNELLIASFSHRSIAIKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRD 178
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQI 199
+ +D E +RAI LF N S + SE + A++
Sbjct: 179 MQMDKTELGCLRAIVLF----------NPDSKGLSNPSE-----------VEALREKVYA 217
Query: 200 FLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI E LFF +IG +T I + M
Sbjct: 218 SLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCQEHLFFFKLIG-DTPIDTFLMEM 273
>gi|1374879|gb|AAC41998.1| nuclear hormone receptor, partial [Homo sapiens]
Length = 256
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 64/177 (36%), Gaps = 40/177 (22%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEE-------------------V 127
LL W LF+LGLAQ + ++ E + + +EE V
Sbjct: 86 LLQGCWGPLFLLGLAQDAVTFEVAEAPVPSILKKILLEEPSSSGGSGQLPDRPQPSLAAV 145
Query: 128 IRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDV 187
Q L F L + P EY ++ LF + L+
Sbjct: 146 QWLQCCLESFWSLELSPKEYACLKGTILFNPDVPG---------------------LQAA 184
Query: 188 IAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
I +Q L + + P+ R ++ L LKSIP+ +L +LFFR IIG
Sbjct: 185 SHIGHLQQEAHWVLCEVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPIIG 241
>gi|426225979|ref|XP_004007135.1| PREDICTED: uncharacterized protein LOC101108039 [Ovis aries]
Length = 873
Score = 45.1 bits (105), Expect = 0.029, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 21/112 (18%)
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
++++ + + +D E +RAI LF N S + +E + A
Sbjct: 479 LVSKMRDMQMDKTELGCLRAIVLF----------NPDSKGLSNPAE-----------VEA 517
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
++ L Y YP QP RF K+ L LP L+SI LE LFF ++IG
Sbjct: 518 LREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFHLIG 569
>gi|355752946|gb|EHH56992.1| hypothetical protein EGM_06542, partial [Macaca fascicularis]
Length = 453
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 71/179 (39%), Gaps = 31/179 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 290 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 349
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHT 197
+ +D E +RAI LF +P+S L + + A++
Sbjct: 350 DMQMDKTELGCLRAIVLF----------------------NPDSKGLSNPAEVEALREKV 387
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 388 YASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 445
>gi|383872390|ref|NP_001244539.1| retinoic acid receptor RXR-gamma [Macaca mulatta]
gi|355558991|gb|EHH15771.1| hypothetical protein EGK_01907 [Macaca mulatta]
gi|355746155|gb|EHH50780.1| hypothetical protein EGM_01657 [Macaca fascicularis]
gi|380815424|gb|AFE79586.1| retinoic acid receptor RXR-gamma isoform a [Macaca mulatta]
Length = 463
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 68/178 (38%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + S+ G L+ + H F VL E K
Sbjct: 300 ILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMK 359
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N + + SE + ++
Sbjct: 360 DMQMDKSELGCLRAIVLF----------NPDAKGLSNPSE-----------VETLREKVY 398
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 399 ATLEAYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 455
>gi|4506755|ref|NP_002948.1| retinoic acid receptor RXR-alpha [Homo sapiens]
gi|133701|sp|P19793.1|RXRA_HUMAN RecName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Nuclear receptor subfamily 2 group B member 1;
AltName: Full=Retinoid X receptor alpha
gi|35885|emb|CAA36982.1| unnamed protein product [Homo sapiens]
gi|84201602|gb|AAI10999.1| Retinoid X receptor, alpha [Homo sapiens]
gi|119608529|gb|EAW88123.1| retinoid X receptor, alpha, isoform CRA_b [Homo sapiens]
gi|119608530|gb|EAW88124.1| retinoid X receptor, alpha, isoform CRA_b [Homo sapiens]
gi|167773495|gb|ABZ92182.1| retinoid X receptor, alpha [synthetic construct]
gi|208965438|dbj|BAG72733.1| retinoid X receptor, alpha [synthetic construct]
gi|216409718|dbj|BAH02296.1| retinoid X receptor, alpha [Homo sapiens]
gi|325495497|gb|ADZ17354.1| retinoid X nuclear receptor alpha [Homo sapiens]
gi|380815422|gb|AFE79585.1| retinoic acid receptor RXR-alpha [Macaca mulatta]
gi|383420605|gb|AFH33516.1| retinoic acid receptor RXR-alpha [Macaca mulatta]
gi|226861|prf||1609194A retinoic acid receptor RXRalpha
Length = 462
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 71/179 (39%), Gaps = 31/179 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 299 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 358
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHT 197
+ +D E +RAI LF +P+S L + + A++
Sbjct: 359 DMQMDKTELGCLRAIVLF----------------------NPDSKGLSNPAEVEALREKV 396
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 397 YASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 454
>gi|70799020|gb|AAZ09200.1| retinoid X receptor alpha protein [Bos taurus]
Length = 152
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 54/124 (43%), Gaps = 22/124 (17%)
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
++++ + + +D E +RAI LF N S + +E + A
Sbjct: 43 LVSKMRDMQMDKTELGCLRAIVLF----------NPDSKGLSNPAE-----------VEA 81
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
++ L Y YP QP RF K+ L LP L+S+ LE LFF +IG +T I
Sbjct: 82 LREKVYASLGAYCKHKYPEQPGRFAKLLLRLPALRSVGLKCLEHLFFFKLIG-DTPIDTF 140
Query: 253 IWHM 256
+ M
Sbjct: 141 LMEM 144
>gi|332245128|ref|XP_003271715.1| PREDICTED: nuclear receptor subfamily 0 group B member 2 [Nomascus
leucogenys]
Length = 257
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 64/177 (36%), Gaps = 40/177 (22%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEE-------------------V 127
LL W LF+LGLAQ + ++ E + + +EE V
Sbjct: 87 LLQGCWGPLFLLGLAQDAVTFEVAEAPVPSILKKILLEEPSSSGGSGQLPDRPQPSLAAV 146
Query: 128 IRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDV 187
Q L F L + P EY ++ LF + L+
Sbjct: 147 QWLQCCLESFWSLELSPKEYACLKGTILFNPDVPG---------------------LQAA 185
Query: 188 IAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
I +Q L + + P+ R ++ L LKSIP+ +L +LFFR IIG
Sbjct: 186 SHIGHLQQEAHWALCEVLEPWCPAAQGRLARVLLTASTLKSIPTSLLGDLFFRPIIG 242
>gi|40886675|gb|AAR96256.1| retinoid X receptor gamma [Sus scrofa]
Length = 431
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 68/178 (38%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + S+ G L+ + H F VL E K
Sbjct: 268 ILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMK 327
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N + + SE + ++
Sbjct: 328 DMQMDKSELGCLRAIVLF----------NPDAKGLSNPSE-----------VETLREKVY 366
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 367 ATLEXYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 423
>gi|395844547|ref|XP_003795021.1| PREDICTED: retinoic acid receptor RXR-alpha [Otolemur garnettii]
Length = 487
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 65/166 (39%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 324 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 383
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF D++ L + + A++
Sbjct: 384 DMQMDKTELGCLRAIVLFN-------PDSKG--------------LSNPAEVEALREKVY 422
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 423 ASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 468
>gi|449269065|gb|EMC79874.1| Retinoic acid receptor RXR-alpha, partial [Columba livia]
Length = 458
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 71/179 (39%), Gaps = 31/179 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 295 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 354
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHT 197
+ +D E +RAI LF +P+S L + + A++
Sbjct: 355 DMQMDKTELGCLRAIVLF----------------------NPDSKGLSNPAEVEALREKV 392
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 393 YASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 450
>gi|83638436|gb|ABC33911.1| retinoid X receptor alpha transcript variant 1 [Sus scrofa]
Length = 374
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 71/179 (39%), Gaps = 31/179 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 211 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 270
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHT 197
+ +D E +RAI LF +P+S L + + A++
Sbjct: 271 DMQMDKTELGCLRAIVLF----------------------NPDSKGLSNPAEVEALREKV 308
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 309 YASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKRLEHLFFFKLIG-DTPIDTFLMEM 366
>gi|83026436|gb|ABB96254.1| retinoid X receptor, alpha [Homo sapiens]
Length = 452
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 70/178 (39%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 289 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 348
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF D++ L + + A++
Sbjct: 349 DMQMDKTELGCLRAIVLFN-------PDSKG--------------LSNPAEVEALREKVY 387
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 388 ASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 444
>gi|403272547|ref|XP_003928117.1| PREDICTED: retinoic acid receptor RXR-gamma [Saimiri boliviensis
boliviensis]
Length = 463
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 63/166 (37%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + S+ G L+ + H F VL E K
Sbjct: 300 ILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMK 359
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N + + SE + ++
Sbjct: 360 DMQMDKSELGCLRAIVLF----------NPDAKGLSNPSE-----------VETLREKVY 398
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 399 ATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 444
>gi|301756739|ref|XP_002914218.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Ailuropoda
melanoleuca]
Length = 463
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 68/178 (38%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + S+ G L+ + H F VL E K
Sbjct: 300 ILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMK 359
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N + + SE + ++
Sbjct: 360 DMQMDKSELGCLRAIVLF----------NPDAKGLSNPSE-----------VETLREKVY 398
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 399 ATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 455
>gi|355567352|gb|EHH23693.1| hypothetical protein EGK_07223, partial [Macaca mulatta]
Length = 453
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 71/179 (39%), Gaps = 31/179 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 290 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 349
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHT 197
+ +D E +RAI LF +P+S L + + A++
Sbjct: 350 DMQMDKTELGCLRAIVLF----------------------NPDSKGLSNPAEVEALREKV 387
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 388 YASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 445
>gi|354486852|ref|XP_003505591.1| PREDICTED: LOW QUALITY PROTEIN: retinoic acid receptor
RXR-gamma-like [Cricetulus griseus]
Length = 463
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 68/178 (38%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + S+ G L+ + H F VL E K
Sbjct: 300 ILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMK 359
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N + + SE + ++
Sbjct: 360 DMQMDKSELGCLRAIVLF----------NPDAKGLSNPSE-----------VETLREKVY 398
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 399 ATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 455
>gi|332219399|ref|XP_003258843.1| PREDICTED: retinoic acid receptor RXR-gamma [Nomascus leucogenys]
Length = 463
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 63/166 (37%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + S+ G L+ + H F VL E K
Sbjct: 300 ILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMK 359
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N + + SE + ++
Sbjct: 360 DMQMDKSELGCLRAIVLF----------NPDAKGLSNPSE-----------VETLREKVY 398
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 399 ATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 444
>gi|296229938|ref|XP_002760488.1| PREDICTED: retinoic acid receptor RXR-gamma [Callithrix jacchus]
Length = 463
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 63/166 (37%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + S+ G L+ + H F VL E K
Sbjct: 300 ILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMK 359
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N + + SE + ++
Sbjct: 360 DMQMDKSELGCLRAIVLF----------NPDAKGLSNPSE-----------VETLREKVY 398
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 399 ATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 444
>gi|427785707|gb|JAA58305.1| Putative retinoid x receptor alpha a [Rhipicephalus pulchellus]
Length = 433
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 48/119 (40%), Gaps = 25/119 (21%)
Query: 130 FQSVLNE----FKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLR 185
F VL E + + +D E +RA+ LF E K LR
Sbjct: 318 FDRVLTELVAKMREMKMDRTELGCLRAVVLFNP----EAKG-----------------LR 356
Query: 186 DVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
+ A++ L + YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 357 STAQVEALREKVYAALEDHCRQQYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 415
>gi|74006096|ref|XP_536146.2| PREDICTED: retinoic acid receptor RXR-gamma isoform 1 [Canis lupus
familiaris]
Length = 463
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 68/178 (38%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + S+ G L+ + H F VL E K
Sbjct: 300 ILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMK 359
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N + + SE + ++
Sbjct: 360 DMQMDKSELGCLRAIVLF----------NPDAKGLSNPSE-----------VETLREKVY 398
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 399 ATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 455
>gi|74194825|dbj|BAE26004.1| unnamed protein product [Mus musculus]
Length = 467
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 71/179 (39%), Gaps = 31/179 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 304 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 363
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHT 197
+ +D E +RAI LF +P+S L + + A++
Sbjct: 364 DMQMDKTELGCLRAIVLF----------------------NPDSKGLSNPAEVEALREKV 401
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 402 YASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 459
>gi|6677829|ref|NP_033133.1| retinoic acid receptor RXR-gamma isoform 1 [Mus musculus]
gi|1350914|sp|P28705.2|RXRG_MOUSE RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|200882|gb|AAA40082.1| retinoid X receptor-gamma [Mus musculus]
gi|386367|gb|AAB27244.1| retinoid-X receptor-gamma isoform 1 [Mus sp.]
gi|34849539|gb|AAH58401.1| Retinoid X receptor gamma [Mus musculus]
gi|148707231|gb|EDL39178.1| retinoid X receptor gamma [Mus musculus]
Length = 463
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 68/178 (38%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + S+ G L+ + H F VL E K
Sbjct: 300 ILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMK 359
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N + + SE + ++
Sbjct: 360 DMQMDKSELGCLRAIVLF----------NPDAKGLSNPSE-----------VETLREKVY 398
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 399 ATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDSFLMEM 455
>gi|297665875|ref|XP_002811273.1| PREDICTED: nuclear receptor subfamily 0 group B member 2 [Pongo
abelii]
Length = 257
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 64/177 (36%), Gaps = 40/177 (22%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEE-------------------V 127
LL W LF+LGLAQ + ++ E + + +EE V
Sbjct: 87 LLQGCWGPLFLLGLAQDAVTFEVAEAPVPSILKKILLEEPSSSGGSGQLPNRPQPSLAAV 146
Query: 128 IRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDV 187
Q L F L + P EY ++ LF + L+
Sbjct: 147 QWLQCCLESFWSLELSPKEYACLKGTILFNPDVPG---------------------LQAA 185
Query: 188 IAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
I +Q L + + P+ R ++ L LKSIP+ +L +LFFR IIG
Sbjct: 186 SHIGHLQQEAHWALCEVLEPWCPAAQGRLARVLLTASTLKSIPTSLLGDLFFRPIIG 242
>gi|147732610|sp|A2T929.2|RXRAA_DANRE RecName: Full=Retinoic acid receptor RXR-alpha-A; AltName:
Full=Nuclear receptor subfamily 2 group B member 1-A;
AltName: Full=RXRalpha-B; AltName: Full=Retinoid X
receptor alpha-A
Length = 430
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 71/178 (39%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 267 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 326
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF D++ S+ + + A++
Sbjct: 327 DMQMDKTELGCLRAIVLFNP-------DSKGLSNPGE--------------VEALREKVY 365
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 366 ASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 422
>gi|395825135|ref|XP_003785797.1| PREDICTED: retinoic acid receptor RXR-gamma [Otolemur garnettii]
Length = 463
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 68/178 (38%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + S+ G L+ + H F VL E K
Sbjct: 300 ILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMK 359
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N + + SE + ++
Sbjct: 360 DMQMDKSELGCLRAIVLF----------NPDAKGLSNPSE-----------VETLREKVY 398
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 399 ATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 455
>gi|351696221|gb|EHA99139.1| Retinoic acid receptor RXR-gamma [Heterocephalus glaber]
Length = 463
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 68/178 (38%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + S+ G L+ + H F VL E K
Sbjct: 300 ILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMK 359
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N + + SE + ++
Sbjct: 360 DMQMDKSELGCLRAIVLF----------NPDAKGLSNPSE-----------VETLREKVY 398
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 399 ATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 455
>gi|238859643|ref|NP_001155023.1| retinoic acid receptor RXR-alpha-A [Danio rerio]
Length = 458
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 71/178 (39%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 295 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 354
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF D++ S+ + + A++
Sbjct: 355 DMQMDKTELGCLRAIVLFN-------PDSKGLSNPGE--------------VEALREKVY 393
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 394 ASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 450
>gi|167016572|sp|Q0GFF6.2|RXRG_PIG RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
Length = 463
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 63/166 (37%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + S+ G L+ + H F VL E K
Sbjct: 300 ILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMK 359
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N + + SE + ++
Sbjct: 360 DMQMDKSELGCLRAIVLF----------NPDAKGLSNPSE-----------VETLREKVY 398
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 399 ATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 444
>gi|146332495|gb|ABQ22753.1| retinoic acid receptor RXR-gamma-like protein [Callithrix jacchus]
Length = 126
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 53/131 (40%), Gaps = 26/131 (19%)
Query: 130 FQSVLNEF----KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLR 185
F VL E K + +D E +RAI LF N + + SE
Sbjct: 10 FDRVLTELVSKMKDMQMDKSELGCLRAIVLF----------NPDAKGLSNPSE------- 52
Query: 186 DVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
+ ++ L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 53 ----VETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG- 107
Query: 246 NTTIKKTIWHM 256
+T I + M
Sbjct: 108 DTPIDTFLMEM 118
>gi|147899545|ref|NP_001084198.1| nuclear receptor subfamily 2 group C member 1-A [Xenopus laevis]
gi|82201033|sp|Q6GN21.1|N2C1A_XENLA RecName: Full=Nuclear receptor subfamily 2 group C member 1-A;
AltName: Full=Developmental orphan receptor 2-A;
Short=DOR2-A; Short=xDOR2-A; AltName: Full=Orphan
nuclear receptor TR2-A; AltName: Full=Testicular
receptor 2-A
gi|49118996|gb|AAH73700.1| DOR2 protein [Xenopus laevis]
Length = 637
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 72/174 (41%), Gaps = 37/174 (21%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD---------------IEEEVIRFQ 131
L+ W ELF LGLAQ +++ E + + H+ + + + + Q
Sbjct: 459 LVKACWNELFSLGLAQCSQVMNV-ETILAAFVNHLQNSMQHDKLSSDKVKLVTDHIFKLQ 517
Query: 132 SVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIA 191
N L +D YEY Y++AI LF +HP L +V I
Sbjct: 518 EFCNSMVKLCVDGYEYAYLKAIALF-------------------SPDHPG--LENVSHIE 556
Query: 192 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
+Q + Y+ YP R ++ L LP L+ + + + EELFF +IG+
Sbjct: 557 KLQEKAYMEFQDYVTKTYPEDTYRLSRLLLRLPALRLMNAAITEELFFAGLIGN 610
Score = 37.7 bits (86), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 16/85 (18%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD---------------IEEEVIRFQ 47
L+ W ELF LGLAQ +++ E + + H+ + + + + Q
Sbjct: 459 LVKACWNELFSLGLAQCSQVMNV-ETILAAFVNHLQNSMQHDKLSSDKVKLVTDHIFKLQ 517
Query: 48 SVLNEFKVLNIDPYEYDYIRAITLF 72
N L +D YEY Y++AI LF
Sbjct: 518 EFCNSMVKLCVDGYEYAYLKAIALF 542
>gi|400270857|gb|AFP75252.1| retinoid X receptor, partial [Tupaia belangeri]
Length = 431
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 70/178 (39%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 268 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 327
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF D++ L + + A++
Sbjct: 328 DMQMDKTELGCLRAIVLFNP-------DSKG--------------LSNPAEVEALREKVY 366
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 367 ASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 423
>gi|115495279|ref|NP_001068876.1| retinoic acid receptor RXR-gamma [Bos taurus]
gi|119367365|sp|Q0VC20.1|RXRG_BOVIN RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|111305288|gb|AAI20392.1| Retinoid X receptor, gamma [Bos taurus]
gi|296489911|tpg|DAA32024.1| TPA: retinoic acid receptor RXR-gamma [Bos taurus]
Length = 463
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 63/166 (37%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + S+ G L+ + H F VL E K
Sbjct: 300 ILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMK 359
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N + + SE + ++
Sbjct: 360 DMQMDKSELGCLRAIVLF----------NPDAKGLSNPSE-----------VETLREKVY 398
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 399 ATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 444
>gi|390432215|gb|AFL91699.1| retinoid X receptor isoform d [Azumapecten farreri]
Length = 470
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 71/178 (39%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + + G L+ + H + F VL E +
Sbjct: 307 ILLRAGWNELLIAAFSHRSIVVKDGILLATGLHVHRSSAHQAGVGTIFDRVLTELVAKMR 366
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF D + S+ + + A++
Sbjct: 367 EMKMDKTELGCLRAIVLFNP-------DAKGLSA--------------IQEVEALREKVY 405
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L +Y T YP +P RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 406 ASLEEYSKTRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 462
>gi|149039210|gb|EDL93430.1| retinoid X receptor alpha, isoform CRA_b [Rattus norvegicus]
Length = 439
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 70/178 (39%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 276 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 335
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF D++ L + + A++
Sbjct: 336 DMQMDKTELGCLRAIVLFN-------PDSKG--------------LSNPAEVEALREKVY 374
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 375 ASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 431
>gi|6755384|ref|NP_035435.1| retinoic acid receptor RXR-alpha [Mus musculus]
gi|133702|sp|P28700.1|RXRA_MOUSE RecName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Nuclear receptor subfamily 2 group B member 1;
AltName: Full=Retinoid X receptor alpha
gi|54022|emb|CAA46962.1| retinoid X receptor-alpha [Mus musculus]
gi|200878|gb|AAA40080.1| retinoid X receptor alpha [Mus musculus]
gi|187953011|gb|AAI38803.1| Retinoid X receptor alpha [Mus musculus]
gi|187954071|gb|AAI38801.1| Retinoid X receptor alpha [Mus musculus]
Length = 467
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 71/179 (39%), Gaps = 31/179 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 304 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 363
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHT 197
+ +D E +RAI LF +P+S L + + A++
Sbjct: 364 DMQMDKTELGCLRAIVLF----------------------NPDSKGLSNPAEVEALREKV 401
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 402 YASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 459
>gi|210060988|pdb|3DZU|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Bvt.13, 9-Cis Retinoic Acid And Ncoa2
Peptide
gi|210060994|pdb|3DZY|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Rosiglitazone, 9-Cis Retinoic Acid And
Ncoa2 Peptide
gi|210061000|pdb|3E00|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Gw9662, 9-Cis Retinoic Acid And Ncoa2
Peptide
Length = 467
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 66/167 (39%), Gaps = 30/167 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 304 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 363
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHT 197
+ +D E +RAI LF +P+S L + + A++
Sbjct: 364 DMQMDKTELGCLRAIVLF----------------------NPDSKGLSNPAEVEALREKV 401
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 402 YASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 448
>gi|120975018|gb|ABM46804.1| NR0B2 [Gorilla gorilla]
Length = 195
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 64/177 (36%), Gaps = 40/177 (22%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEE-------------------EV 127
LL W LF+LGLAQ + ++ E + + +EE V
Sbjct: 26 LLQGCWGPLFLLGLAQDAVTFEVAEAPVPSILKKILLEEPSSSGGSGQLPDRPQPSLASV 85
Query: 128 IRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDV 187
Q L F L + P EY ++ LF + L+
Sbjct: 86 QWLQCCLESFWSLELSPKEYACLKGTILFNPDVPG---------------------LQAA 124
Query: 188 IAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
I +Q L + + P+ R ++ L LKSIP+ +L +LFFR IIG
Sbjct: 125 SHIGHLQQEAHWALCEVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPIIG 181
>gi|5902068|ref|NP_008848.1| retinoic acid receptor RXR-gamma isoform a [Homo sapiens]
gi|114561087|ref|XP_513962.2| PREDICTED: retinoic acid receptor RXR-gamma isoform 2 [Pan
troglodytes]
gi|397508368|ref|XP_003824630.1| PREDICTED: retinoic acid receptor RXR-gamma [Pan paniscus]
gi|1350913|sp|P48443.1|RXRG_HUMAN RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|1053069|gb|AAA80681.1| retinoid X receptor-gamma [Homo sapiens]
gi|15082315|gb|AAH12063.1| Retinoid X receptor, gamma [Homo sapiens]
gi|48145527|emb|CAG32986.1| RXRG [Homo sapiens]
gi|119611151|gb|EAW90745.1| retinoid X receptor, gamma [Homo sapiens]
gi|190689913|gb|ACE86731.1| retinoid X receptor, gamma protein [synthetic construct]
gi|190691285|gb|ACE87417.1| retinoid X receptor, gamma protein [synthetic construct]
gi|261858858|dbj|BAI45951.1| retinoid X receptor, gamma [synthetic construct]
gi|325495501|gb|ADZ17356.1| retinoid X nuclear receptor gamma variant 1 [Homo sapiens]
gi|326205168|dbj|BAJ83970.1| retinoic acid receptor RXR-gamma [Homo sapiens]
Length = 463
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 68/178 (38%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + S+ G L+ + H F VL E K
Sbjct: 300 ILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMK 359
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N + + SE + ++
Sbjct: 360 DMQMDKSELGCLRAIVLF----------NPDAKGLSNPSE-----------VETLREKVY 398
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 399 ATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 455
>gi|390432211|gb|AFL91697.1| retinoid X receptor isoform b [Azumapecten farreri]
Length = 450
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 71/178 (39%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + + G L+ + H + F VL E +
Sbjct: 287 ILLRAGWNELLIAAFSHRSIVVKDGILLATGLHVHRSSAHQAGVGTIFDRVLTELVAKMR 346
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF D + S+ + + A++
Sbjct: 347 EMKMDKTELGCLRAIVLFNP-------DAKGLSA--------------IQEVEALREKVY 385
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L +Y T YP +P RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 386 ASLEEYSKTRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 442
>gi|301770651|ref|XP_002920751.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Ailuropoda
melanoleuca]
Length = 516
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 71/179 (39%), Gaps = 31/179 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 353 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 412
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHT 197
+ +D E +RAI LF +P+S L + + A++
Sbjct: 413 DMQMDKTELGCLRAIVLF----------------------NPDSKGLSNPAEVEALREKV 450
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 451 YASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 508
>gi|390432213|gb|AFL91698.1| retinoid X receptor isoform c [Azumapecten farreri]
Length = 466
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 71/178 (39%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + + G L+ + H + F VL E +
Sbjct: 303 ILLRAGWNELLIAAFSHRSIVVKDGILLATGLHVHRSSAHQAGVGTIFDRVLTELVAKMR 362
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF D + S+ + + A++
Sbjct: 363 EMKMDKTELGCLRAIVLFNP-------DAKGLSA--------------IQEVEALREKVY 401
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L +Y T YP +P RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 402 ASLEEYSKTRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 458
>gi|126635937|gb|ABO21861.1| Dax-1 [Acanthopagrus schlegelii]
Length = 287
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 77/194 (39%), Gaps = 44/194 (22%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHV-----DIEEEVIRFQSVLNEFKV- 139
+L+ W L +LGLAQ + E VE + + D + E + QS V
Sbjct: 115 MLIRSCWAPLLVLGLAQDRVDFETTETVEPSMLQRILTGVPDRQSEALAGQSSRGAAGVS 174
Query: 140 ----------------LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC 183
++I EY Y++ LF +E
Sbjct: 175 VVDIEAIKAFLKKCWSVDISTKEYAYLKGAVLFNPDVEG--------------------- 213
Query: 184 LRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNII 243
LR + I +++ LN+++ ++ TRF K+ + L L++I V+ +LFFR +I
Sbjct: 214 LRCLHYIQSLRREAHQALNEHVRLIHREDTTRFAKLLIALSMLRAISPPVVAQLFFRPVI 273
Query: 244 GHNTTIKKTIWHMY 257
G I++ + M+
Sbjct: 274 GA-VNIEEVLMEMF 286
>gi|345806213|ref|XP_858806.2| PREDICTED: retinoic acid receptor RXR-alpha isoform 11 [Canis lupus
familiaris]
Length = 492
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 66/167 (39%), Gaps = 30/167 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 329 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 388
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHT 197
+ +D E +RAI LF +P+S L + + A++
Sbjct: 389 DMQMDKSELGCLRAIVLF----------------------NPDSKGLSNPAEVEALREKV 426
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 427 YASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 473
>gi|390432209|gb|AFL91696.1| retinoid X receptor isoform a [Azumapecten farreri]
Length = 446
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 71/178 (39%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + + G L+ + H + F VL E +
Sbjct: 283 ILLRAGWNELLIAAFSHRSIVVKDGILLATGLHVHRSSAHQAGVGTIFDRVLTELVARMR 342
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF D + S+ + + A++
Sbjct: 343 EMKMDKTELGCLRAIVLFNP-------DAKGLSA--------------IQEVEALREKVY 381
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L +Y T YP +P RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 382 ASLEEYSKTRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 438
>gi|296191131|ref|XP_002743523.1| PREDICTED: retinoic acid receptor RXR-alpha [Callithrix jacchus]
Length = 603
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 70/178 (39%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 440 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 499
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF D++ L + + A++
Sbjct: 500 DMQMDKTELGCLRAIVLFN-------PDSKG--------------LSNPAEVEALREKVY 538
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 539 ASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 595
>gi|148676425|gb|EDL08372.1| retinoid X receptor alpha [Mus musculus]
Length = 457
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 71/179 (39%), Gaps = 31/179 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 294 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 353
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHT 197
+ +D E +RAI LF +P+S L + + A++
Sbjct: 354 DMQMDKTELGCLRAIVLF----------------------NPDSKGLSNPAEVEALREKV 391
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 392 YASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 449
>gi|426217053|ref|XP_004002768.1| PREDICTED: retinoic acid receptor RXR-gamma [Ovis aries]
Length = 463
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 63/166 (37%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + S+ G L+ + H F VL E K
Sbjct: 300 ILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMK 359
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N + + SE + ++
Sbjct: 360 DMQMDKSELGCLRAIVLF----------NPDAKGLSNPSE-----------VETLREKVY 398
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 399 ATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 444
>gi|39645799|gb|AAH63827.1| RXRA protein [Homo sapiens]
Length = 516
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 70/178 (39%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 353 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 412
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF D++ L + + A++
Sbjct: 413 DMQMDKTELGCLRAIVLFN-------PDSKG--------------LSNPAEVEALREKVY 451
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 452 ASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 508
>gi|197101785|ref|NP_001124824.1| retinoic acid receptor RXR-gamma [Pongo abelii]
gi|402858038|ref|XP_003893537.1| PREDICTED: retinoic acid receptor RXR-gamma [Papio anubis]
gi|75062013|sp|Q5REL6.1|RXRG_PONAB RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|55726030|emb|CAH89791.1| hypothetical protein [Pongo abelii]
Length = 463
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 68/178 (38%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + S+ G L+ + H F VL E K
Sbjct: 300 ILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMK 359
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N + + SE + ++
Sbjct: 360 DMQMDKSELGCLRAIVLF----------NPDAKGLSNPSE-----------VETLREKVY 398
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 399 ATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 455
>gi|339245569|ref|XP_003378710.1| photoreceptor-specific nuclear receptor [Trichinella spiralis]
gi|316972367|gb|EFV56045.1| photoreceptor-specific nuclear receptor [Trichinella spiralis]
Length = 547
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 36/185 (19%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD----IEEEVIR------FQSVLN 135
+LL ESW +LF+L L Q+ S+ +G S V I + R Q +L
Sbjct: 388 ILLEESWSDLFLLTLYQW--SMPMGSSALLSHSSFVQFAGGINSNIFRPSDLRYLQDLLA 445
Query: 136 EFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQ 194
F+ +DP E+ ++AI LF+ PE+ L+D I +Q
Sbjct: 446 RFRSCALDPAEFVCLKAIALFR----------------------PEARGLKDPAQIELLQ 483
Query: 195 GHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIW 254
Q L ++ P+ RF ++ L+LP L+++ + +E LFF + I ++K +
Sbjct: 484 DQAQYMLIQHTQISQPNPAQRFGRLLLMLPLLRTVGTEKIEILFFNHGI-RCMQMEKILC 542
Query: 255 HMYKN 259
MYK+
Sbjct: 543 DMYKS 547
>gi|1685271|gb|AAB36777.1| RXR alpha 2 [Mus musculus]
gi|1685273|gb|AAB36778.1| RXR alpha 3 [Mus musculus]
Length = 439
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 70/178 (39%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 276 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 335
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF D++ L + + A++
Sbjct: 336 DMQMDKTELGCLRAIVLFNP-------DSKG--------------LSNPAEVEALREKVY 374
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 375 ASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 431
>gi|312065719|ref|XP_003135926.1| hypothetical protein LOAG_00338 [Loa loa]
gi|307768898|gb|EFO28132.1| hypothetical protein LOAG_00338 [Loa loa]
Length = 212
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 73/170 (42%), Gaps = 32/170 (18%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC---------KSRHVDIEEEVIRFQSVLNEF 137
LL SW ELF++ AQ+ + + L+ + + V + + FQ +
Sbjct: 36 LLRASWAELFVVNAAQFGMPVHVAPLLAASGLHSSPPLPTDQLVVFMDRIRVFQGQIERL 95
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGH 196
K L +D E+ ++A+ LF + C L DVI + IQ
Sbjct: 96 KALQMDSAEFCSLKAVILFSV----------------------DCCGLNDVIRVETIQEK 133
Query: 197 TQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHN 246
Q L +Y T Q RF ++ L LP L+SI + V+E+LFF ++G
Sbjct: 134 VQSALEEYCRTQKQLQVGRFGRLLLRLPSLRSISASVIEQLFFVKLVGET 183
>gi|139002557|dbj|BAF52037.1| DSS-AHC critical region on the X chromosome, gene 1 [Xenopus
laevis]
Length = 274
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 73/190 (38%), Gaps = 53/190 (27%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESC----------------------------- 116
LL+ W L +LGLAQ + E E
Sbjct: 97 LLVRSCWAPLLVLGLAQDKVDFETVETSEPSMLQRILTTRQEGERKQQLQQQDSLLGSPQ 156
Query: 117 -KSRHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDD 175
K H+ E+ + L++ L+I EY Y++ I LF
Sbjct: 157 HKLSHLPSAAEIRWIKEFLDKCWNLDISTKEYAYLKGIVLF------------------- 197
Query: 176 GSEHPE-SCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVL 234
+PE L + I +Q Q LN++I ++ + TRF K+ ++L L+++ + +
Sbjct: 198 ---NPELPGLHCIQYIQGLQHEAQQALNEHIKMIHRWEQTRFSKLMIVLSFLRTVNANAI 254
Query: 235 EELFFRNIIG 244
ELFFR IIG
Sbjct: 255 AELFFRPIIG 264
>gi|464702|sp|Q05343.1|RXRA_RAT RecName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Nuclear receptor subfamily 2 group B member 1;
AltName: Full=Retinoid X receptor alpha
gi|206819|gb|AAA42093.1| retinoid X receptor alpha [Rattus norvegicus]
Length = 467
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 71/179 (39%), Gaps = 31/179 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 304 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 363
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHT 197
+ +D E +RAI LF +P+S L + + A++
Sbjct: 364 DMQMDKTELGCLRAIVLF----------------------NPDSKGLSNPAEVEALREKV 401
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 402 YASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 459
>gi|348565839|ref|XP_003468710.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Cavia porcellus]
Length = 451
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 63/166 (37%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + S+ G L+ + H F VL E K
Sbjct: 288 ILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMK 347
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N + + SE + ++
Sbjct: 348 DMQMDKSELGCLRAIVLF----------NPDAKGLSNPSE-----------VETLREKVY 386
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 387 ATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 432
>gi|354501950|ref|XP_003513051.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Cricetulus
griseus]
gi|344245296|gb|EGW01400.1| Retinoic acid receptor RXR-alpha [Cricetulus griseus]
Length = 439
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 70/178 (39%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 276 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 335
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF D++ L + + A++
Sbjct: 336 DMQMDKTELGCLRAIVLFN-------PDSKG--------------LSNPAEVEALREKVY 374
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 375 ASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 431
>gi|126297986|ref|XP_001372307.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Monodelphis
domestica]
Length = 489
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 65/166 (39%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 326 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 385
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF D++ L + + A++
Sbjct: 386 DMQMDKTELGCLRAIVLFN-------PDSKG--------------LSNPAEVEALREKVY 424
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 425 ASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 470
>gi|148747360|ref|NP_036937.2| retinoic acid receptor RXR-alpha [Rattus norvegicus]
gi|110781215|emb|CAL25727.1| retinoid X receptor alpha [Rattus norvegicus]
gi|110781217|emb|CAL25728.1| retinoid X receptor alpha [Rattus norvegicus]
gi|112982471|emb|CAL36079.1| retinoid X receptor alpha [Rattus norvegicus]
gi|149039209|gb|EDL93429.1| retinoid X receptor alpha, isoform CRA_a [Rattus norvegicus]
Length = 467
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 71/179 (39%), Gaps = 31/179 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 304 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 363
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHT 197
+ +D E +RAI LF +P+S L + + A++
Sbjct: 364 DMQMDKTELGCLRAIVLF----------------------NPDSKGLSNPAEVEALREKV 401
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 402 YASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 459
>gi|281348859|gb|EFB24443.1| hypothetical protein PANDA_002085 [Ailuropoda melanoleuca]
Length = 447
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 68/178 (38%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + S+ G L+ + H F VL E K
Sbjct: 284 ILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMK 343
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N + + SE + ++
Sbjct: 344 DMQMDKSELGCLRAIVLF----------NPDAKGLSNPSE-----------VETLREKVY 382
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 383 ATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 439
>gi|189066517|dbj|BAG35767.1| unnamed protein product [Homo sapiens]
Length = 463
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 68/178 (38%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + S+ G L+ + H F VL E K
Sbjct: 300 ILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMK 359
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N + + SE + ++
Sbjct: 360 DMQMDKSELGCLRAIVLF----------NPDAKGLSNPSE-----------VETLREKVY 398
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 399 ATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 455
>gi|108999785|ref|XP_001110533.1| PREDICTED: nuclear receptor subfamily 0 group B member 2-like
[Macaca mulatta]
gi|402853541|ref|XP_003891451.1| PREDICTED: nuclear receptor subfamily 0 group B member 2 [Papio
anubis]
gi|355557715|gb|EHH14495.1| hypothetical protein EGK_00429 [Macaca mulatta]
gi|355758486|gb|EHH61480.1| hypothetical protein EGM_20825 [Macaca fascicularis]
Length = 257
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 64/177 (36%), Gaps = 40/177 (22%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEE-------------------V 127
LL W LF+LGLAQ + ++ E + + +EE V
Sbjct: 87 LLQGCWGPLFLLGLAQDAVTFEVAEAPVPSILKKILLEEPSSSGGSGQPPDRPQPSLAAV 146
Query: 128 IRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDV 187
Q L F L + P EY ++ LF + L+
Sbjct: 147 QWLQCCLESFWGLELSPKEYACLKGTILFNPDVPG---------------------LQAA 185
Query: 188 IAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
I +Q L + + P+ R ++ L LKSIP+ +L +LFFR IIG
Sbjct: 186 SHIGHLQQEAHWALCEVLEPWCPAAQGRLARVLLTASTLKSIPTSLLGDLFFRPIIG 242
>gi|440910600|gb|ELR60380.1| Retinoic acid receptor RXR-gamma, partial [Bos grunniens mutus]
Length = 447
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 63/166 (37%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + S+ G L+ + H F VL E K
Sbjct: 284 ILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMK 343
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N + + SE + ++
Sbjct: 344 DMQMDKSELGCLRAIVLF----------NPDAKGLSNPSE-----------VETLREKVY 382
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 383 ATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 428
>gi|61657903|ref|NP_113953.1| retinoic acid receptor RXR-gamma [Rattus norvegicus]
gi|81888393|sp|Q5BJR8.1|RXRG_RAT RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|60551535|gb|AAH91363.1| Retinoid X receptor gamma [Rattus norvegicus]
gi|149058122|gb|EDM09279.1| retinoid X receptor gamma, isoform CRA_a [Rattus norvegicus]
Length = 463
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 68/178 (38%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + S+ G L+ + H F VL E K
Sbjct: 300 ILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMK 359
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N + + SE + ++
Sbjct: 360 DMRMDKSELGCLRAIVLF----------NPDAKGLSNPSE-----------VETLREKVY 398
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 399 ATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 455
>gi|327268349|ref|XP_003218960.1| PREDICTED: nuclear receptor subfamily 0 group B member 1-like
[Anolis carolinensis]
Length = 268
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 69/177 (38%), Gaps = 39/177 (22%)
Query: 86 LLLAESWRELFILGLAQ----------YLPSLDLGELV-------ESCKSR-HVDIEEEV 127
+L+ W L LGLAQ PS+ L E +SR + E+
Sbjct: 97 VLVRSCWAPLLALGLAQDRVHFETVESARPSMLQRILTTQRRPEEEPGRSRPQLPSAGEI 156
Query: 128 IRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDV 187
Q L + L+I EY Y++ LF + L V
Sbjct: 157 QAIQGFLAKCWSLDISTKEYAYLKGTVLFNPDLPG---------------------LHCV 195
Query: 188 IAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
I +Q Q LN+++ ++ RF K+ + L L+SI + V+ ELFFR IIG
Sbjct: 196 QYIQGLQQEAQQALNEHVRLIHRGDEARFAKLNVALSMLRSINANVIAELFFRPIIG 252
>gi|114554971|ref|XP_001146990.1| PREDICTED: nuclear receptor subfamily 0 group B member 2 [Pan
troglodytes]
gi|397476159|ref|XP_003809477.1| PREDICTED: nuclear receptor subfamily 0 group B member 2 [Pan
paniscus]
Length = 257
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 64/177 (36%), Gaps = 40/177 (22%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEE-------------------V 127
LL W LF+LGLAQ + ++ E + + +EE V
Sbjct: 87 LLQGCWGPLFLLGLAQDAVTFEVAEAPVPSILKKILLEEPSSSGGSGQLPDRPQPSLAAV 146
Query: 128 IRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDV 187
Q L F L + P EY ++ LF + L+
Sbjct: 147 QWLQCCLESFWSLELSPKEYACLKGTILFNPDVPG---------------------LQAA 185
Query: 188 IAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
I +Q L + + P+ R ++ L LKSIP+ +L +LFFR IIG
Sbjct: 186 SHIGHLQQEAHWALCEVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPIIG 242
>gi|426328522|ref|XP_004025301.1| PREDICTED: nuclear receptor subfamily 0 group B member 2 [Gorilla
gorilla gorilla]
Length = 257
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 64/177 (36%), Gaps = 40/177 (22%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEE-------------------EV 127
LL W LF+LGLAQ + ++ E + + +EE V
Sbjct: 87 LLQGCWGPLFLLGLAQDAVTFEVAEAPVPSILKKILLEEPSSSGGSGQLPDRPQPSLASV 146
Query: 128 IRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDV 187
Q L F L + P EY ++ LF + L+
Sbjct: 147 QWLQCCLESFWSLELSPKEYACLKGTILFNPDVPG---------------------LQAA 185
Query: 188 IAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
I +Q L + + P+ R ++ L LKSIP+ +L +LFFR IIG
Sbjct: 186 SHIGHLQQEAHWALCEVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPIIG 242
>gi|314955556|gb|ADT64885.1| retinoid X receptor [Gryllus firmus]
Length = 403
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
LLL W EL I + + G ++ + + H + + F VL E +
Sbjct: 241 LLLRAGWNELLIAAFSHRSMEVKDGIVLATGLTIHRNSAHQAGVGTIFDRVLTELVAKMR 300
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +R++ LF +V+ +S + LR+ + A
Sbjct: 301 EMKMDKTELGCLRSVILFNP----DVRGLKSQQEVE--------MLREKVYAA------- 341
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L +Y T +P +P RF K+ L LP L+SI LE LFF +IG
Sbjct: 342 --LEEYTRTTHPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFRLIG 385
>gi|62859085|ref|NP_001016207.1| nuclear receptor subfamily 2 group C member 1 [Xenopus (Silurana)
tropicalis]
gi|123892381|sp|Q28CK1.1|NR2C1_XENTR RecName: Full=Nuclear receptor subfamily 2 group C member 1;
AltName: Full=Developmental orphan receptor 2;
Short=DOR2; AltName: Full=Orphan nuclear receptor TR2;
AltName: Full=Testicular receptor 2
gi|89268137|emb|CAJ83740.1| nuclear receptor subfamily 2, group C, member 1; orphan receptor,
TR2-11; nuclear receptor subfamily 2, group H, member 1;
developmental orphan receptor 2 [Xenopus (Silurana)
tropicalis]
gi|114108029|gb|AAI23035.1| nr2c1 protein [Xenopus (Silurana) tropicalis]
Length = 636
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 73/174 (41%), Gaps = 37/174 (21%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD---------------IEEEVIRFQ 131
L+ W ELF LGLAQ +++ E + + H+ + + + + Q
Sbjct: 458 LVKACWNELFSLGLAQCCQVMNV-ETILAAFVNHLHNSMQHDKLSADKVKLVMDHIFKLQ 516
Query: 132 SVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIA 191
N L++D YEY Y++AI LF +HP L +V I
Sbjct: 517 EFCNSMVKLSVDGYEYAYLKAIALF-------------------SPDHPG--LENVSHIE 555
Query: 192 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
+Q + Y+ YP R ++ L LP L+ + + + EELFF +IG+
Sbjct: 556 KLQEKAYMEFQDYVTKTYPEDTYRLSRLLLRLPALRLLNAAITEELFFAGLIGN 609
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 16/85 (18%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD---------------IEEEVIRFQ 47
L+ W ELF LGLAQ +++ E + + H+ + + + + Q
Sbjct: 458 LVKACWNELFSLGLAQCCQVMNV-ETILAAFVNHLHNSMQHDKLSADKVKLVMDHIFKLQ 516
Query: 48 SVLNEFKVLNIDPYEYDYIRAITLF 72
N L++D YEY Y++AI LF
Sbjct: 517 EFCNSMVKLSVDGYEYAYLKAIALF 541
>gi|302202572|gb|ADL09403.1| retinoid X receptor [Gryllus firmus]
Length = 403
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
LLL W EL I + + G ++ + + H + + F VL E +
Sbjct: 241 LLLRAGWNELLIAAFSHRSMEVKDGIVLATGLTIHRNSAHQAGVGTIFDRVLTELVAKMR 300
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +R++ LF +V+ +S + LR+ + A
Sbjct: 301 EMKMDKTELGCLRSVILFNP----DVRGLKSQQEVE--------MLREKVYAA------- 341
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L +Y T +P +P RF K+ L LP L+SI LE LFF +IG
Sbjct: 342 --LEEYTRTTHPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFRLIG 385
>gi|410979449|ref|XP_003996096.1| PREDICTED: retinoic acid receptor RXR-alpha [Felis catus]
Length = 527
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 70/178 (39%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 364 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 423
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF D++ L + + A++
Sbjct: 424 DMQMDKTELGCLRAIVLFN-------PDSKG--------------LSNPAEVEALREKVY 462
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 463 ASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 519
>gi|348504636|ref|XP_003439867.1| PREDICTED: retinoic acid receptor RXR-gamma-B-like isoform 2
[Oreochromis niloticus]
Length = 407
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 68/178 (38%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + ++ G L+ + H F VL E K
Sbjct: 244 ILLRAGWNELLIASFSHRSVTVKDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMK 303
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N + + SE + ++
Sbjct: 304 DMQMDKTELGCLRAIVLF----------NPDAKGLSNPSE-----------VEGLREKVY 342
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 343 ASLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 399
>gi|344236823|gb|EGV92926.1| Retinoic acid receptor RXR-gamma [Cricetulus griseus]
Length = 414
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 63/166 (37%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + S+ G L+ + H F VL E K
Sbjct: 251 ILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMK 310
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N + + SE + ++
Sbjct: 311 DMQMDKSELGCLRAIVLF----------NPDAKGLSNPSE-----------VETLREKVY 349
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 350 ATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 395
>gi|283464101|gb|ADB22634.1| retinoid X receptor-like protein [Saccoglossus kowalevskii]
Length = 531
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 64/166 (38%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 369 ILLRAGWNELLIAAFSHRSIAVKDGILLATGLHVHRNSAHSAGVGTIFDRVLTELVAKMR 428
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF ++ L V + ++
Sbjct: 429 EMKMDKTELGCLRAIVLFNPDAKN---------------------LGTVQKVEELREKVY 467
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L +Y YP +P RF K+ L LP L+SI LE LFF +IG
Sbjct: 468 ASLEEYCRKTYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 513
>gi|226316413|gb|ACO44670.1| retinoid X receptor isoform 3 [Crangon crangon]
Length = 399
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 68/165 (41%), Gaps = 27/165 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR--FQSVLNE----FKV 139
+LL W EL I + + G ++ + + + F VL+E K
Sbjct: 233 VLLKAGWNELLIAAFSHRSIGVKDGIVLATGLVHRSSAHQAGVGTIFDRVLSELVAKMKE 292
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQI 199
+ +D E +R+I LF D R +S +D LR+ + A
Sbjct: 293 MKMDKTELGCLRSIVLFN-------PDARGLTSCND-----VEILREKVYAA-------- 332
Query: 200 FLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L +Y T YP +P RF K+ L LP L+SI LE LF +IG
Sbjct: 333 -LEEYTRTSYPHEPGRFAKLLLRLPALRSIGLKCLEYLFLFKLIG 376
>gi|73950543|ref|XP_854945.1| PREDICTED: nuclear receptor subfamily 0 group B member 2 [Canis
lupus familiaris]
Length = 279
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 65/179 (36%), Gaps = 40/179 (22%)
Query: 85 HLLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEE------------------ 126
LLL W LF+LGLAQ + ++ E + + +EE
Sbjct: 88 QLLLRVCWGPLFLLGLAQDTVTFEVAEAPVPSILKKILLEEPSSGAHSGQLPDRPQPSLA 147
Query: 127 -VIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLR 185
V Q L F L + P EY Y++ LF + S H
Sbjct: 148 AVQWLQCCLESFWSLELGPKEYAYLKETILFNPGLPGL-----------HASSH------ 190
Query: 186 DVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
I +Q L + + P+ R ++ L LKSIP +L +LFFR I+G
Sbjct: 191 ----IGHLQEEAHHALCEALEPWCPAGQGRLARVLLTASTLKSIPPSLLGDLFFRPIVG 245
>gi|84028535|gb|ABC49726.1| retinoid X receptor 3 [Petromyzon marinus]
Length = 462
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 62/165 (37%), Gaps = 28/165 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + + G L+ + H F VL E +
Sbjct: 301 ILLRAGWNELLIASFSHRSIGVSDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMR 360
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+N+D E +RA LF D + SS D + A++
Sbjct: 361 DMNMDKAELGCLRATVLFN-------PDAKGLSSPCD--------------VEALREKVY 399
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNII 243
L Y YP QP RF K+ L LP L+SI LE LFF +I
Sbjct: 400 ASLESYCKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLI 444
>gi|417401446|gb|JAA47609.1| Putative retinoic acid receptor rxr-alpha [Desmodus rotundus]
Length = 467
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 70/178 (39%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H F VL E +
Sbjct: 304 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRSSAHSAGVGAIFDRVLTELVSKMR 363
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+++D E +RAI LF D++ L + + A++
Sbjct: 364 DMHMDKTELGCLRAIVLFN-------PDSKG--------------LSNPAEVEALREKVY 402
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 403 ASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 459
>gi|314955738|gb|ADT64886.1| retinoid X receptor [Gryllus firmus]
Length = 358
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
LLL W EL I + + G ++ + + H + + F VL E +
Sbjct: 196 LLLRAGWNELLIAAFSHRSMEVKDGIVLATGLTIHRNSAHQAGVGTIFDRVLTELVAKMR 255
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +R++ LF +V+ +S + LR+ + A
Sbjct: 256 EMKMDKTELGCLRSVILFNP----DVRGLKSQQEVE--------MLREKVYAA------- 296
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L +Y T +P +P RF K+ L LP L+SI LE LFF +IG
Sbjct: 297 --LEEYTRTTHPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFRLIG 340
>gi|431898750|gb|ELK07126.1| Nuclear receptor subfamily 0 group B member 1 [Pteropus alecto]
Length = 475
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 22/141 (15%)
Query: 104 LPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDE 163
LP+L LV+ ++RH+ EV + L + L I EY Y++ LF +
Sbjct: 341 LPTLQP-HLVQPTEARHLPSAAEVQAIKGFLAKCWSLEISTKEYAYLKGTVLFNPDLPG- 398
Query: 164 VKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLIL 223
L+ V I +Q TQ L+++I + RF ++ L
Sbjct: 399 --------------------LQCVNYIQGLQQGTQQILSEHIRMTHRGHQARFAELNSAL 438
Query: 224 PRLKSIPSLVLEELFFRNIIG 244
L+ I + V+ ELFFR +IG
Sbjct: 439 FLLRFINASVVAELFFRPVIG 459
>gi|84028531|gb|ABC49724.1| retinoid X receptor 1 [Petromyzon marinus]
Length = 476
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 62/165 (37%), Gaps = 28/165 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + + G L+ + H F VL E +
Sbjct: 315 ILLRAGWNELLIASFSHRSIGVSDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMR 374
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+N+D E +RA LF D + SS D + A++
Sbjct: 375 DMNMDKAELGCLRATVLFN-------PDAKGLSSPCD--------------VEALREKVY 413
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNII 243
L Y YP QP RF K+ L LP L+SI LE LFF +I
Sbjct: 414 ASLESYCKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLI 458
>gi|399762431|gb|AFP50058.1| Dax1a [Monopterus albus]
Length = 293
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 79/195 (40%), Gaps = 47/195 (24%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVE---------SCKSRHVD-------------- 122
+L+ W L +LGLAQ + E VE R D
Sbjct: 120 MLIRSGWAPLLVLGLAQDRVDFETTETVEPSMLQRILTGLPDRQSDGPAGQSRVAAGVSV 179
Query: 123 IEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES 182
+E E I+ + L + ++I EY Y++ LF +E
Sbjct: 180 VEIEAIK--AFLKKCWSIDISTKEYAYLKGAVLFNPDLEG-------------------- 217
Query: 183 CLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNI 242
LR + I +++ LN+++ ++ TRF K+ + L L++I V+ +LFFR +
Sbjct: 218 -LRCLHYIQSLRREAHQALNEHVRLIHREDTTRFAKLLIALSMLRAISPPVVAQLFFRPV 276
Query: 243 IGHNTTIKKTIWHMY 257
IG +I++ + M+
Sbjct: 277 IG-TVSIEEVLMEMF 290
>gi|324510528|gb|ADY44403.1| Photoreceptor-specific nuclear receptor [Ascaris suum]
Length = 471
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 83/176 (47%), Gaps = 32/176 (18%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIRF-QSVLNEFKVLNIDP 144
+LL E W +LF+L + Q+ ++ L+ S + + +R+ Q + + NID
Sbjct: 326 ILLEEGWCDLFLLSVFQWSLPMEKCPLLTS----TLPLSTNGLRYLQDLFLRIRNHNIDQ 381
Query: 145 YEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHTQIFLNK 203
E+ ++A+ LF+ PE+ L+D + +Q Q L +
Sbjct: 382 GEFACLKALVLFR----------------------PETRGLKDFAHVEELQDQAQQMLAR 419
Query: 204 YIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKN 259
+ S PTRF ++ L+LP L+++ + +E++FF G N +I+K I MYK
Sbjct: 420 HSMA---SGPTRFGRLLLLLPLLRTVGADKIEKMFFEATFG-NMSIEKMICKMYKG 471
>gi|314955486|gb|ADT64884.1| retinoid X receptor [Gryllus firmus]
Length = 403
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
LLL W EL I + + G ++ + + H + + F VL E +
Sbjct: 241 LLLRAGWNELLIAAFSHRSMEVKDGIVLATGLTIHRNSAHQAGVGTIFDRVLTELVAKMR 300
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +R++ LF +V+ +S + LR+ + A
Sbjct: 301 EMKMDKTELGCLRSVILFNP----DVRGLKSQQEVE--------MLREKVYAA------- 341
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L +Y T +P +P RF K+ L LP L+SI LE LFF +IG
Sbjct: 342 --LEEYTRTTHPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFRLIG 385
>gi|41282088|ref|NP_571292.2| retinoic acid receptor RXR-gamma-A [Danio rerio]
gi|52788288|sp|Q90416.2|RXRGA_DANRE RecName: Full=Retinoic acid receptor RXR-gamma-A; AltName:
Full=Nuclear receptor subfamily 2 group B member 3-A;
AltName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Retinoid X receptor alpha; AltName: Full=Retinoid X
receptor gamma-A
gi|37590367|gb|AAH59576.1| Retinoid x receptor, gamma a [Danio rerio]
Length = 441
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 64/166 (38%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + ++ G L+ + H F VL E +
Sbjct: 278 ILLRAGWNELLIASFSHRSVTVKDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMR 337
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N + + SE + A++
Sbjct: 338 DMQMDKTELGCLRAIVLF----------NPDAKGLSNPSE-----------VEALREKVY 376
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 377 ASLEGYTKHNYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 422
>gi|291223399|ref|XP_002731697.1| PREDICTED: retinoid X receptor-like protein [Saccoglossus
kowalevskii]
Length = 497
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 64/166 (38%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 335 ILLRAGWNELLIAAFSHRSIAVKDGILLATGLHVHRNSAHSAGVGTIFDRVLTELVAKMR 394
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF ++ L V + ++
Sbjct: 395 EMKMDKTELGCLRAIVLFNPDAKN---------------------LGTVQKVEELREKVY 433
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L +Y YP +P RF K+ L LP L+SI LE LFF +IG
Sbjct: 434 ASLEEYCRKTYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 479
>gi|61825859|ref|XP_592675.1| PREDICTED: nuclear receptor subfamily 0 group B member 2 [Bos
taurus]
gi|297472194|ref|XP_002685805.1| PREDICTED: nuclear receptor subfamily 0 group B member 2 [Bos
taurus]
gi|296490109|tpg|DAA32222.1| TPA: short heterodimer partner-like [Bos taurus]
Length = 260
Score = 44.7 bits (104), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 70/177 (39%), Gaps = 40/177 (22%)
Query: 87 LLAESWRELFILGLAQ----------YLPSLDLGELVE-----SCKSRHVDIEE----EV 127
LL W LF+LGLAQ +PS+ L+E + S+ D + EV
Sbjct: 90 LLRGCWGPLFLLGLAQDTVTFQVAEVPMPSILKKILLEKPSNGAGSSQRPDRPQPSLAEV 149
Query: 128 IRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDV 187
Q L F L + P EY Y++ LF +V +SS
Sbjct: 150 QWLQCCLESFWSLELGPKEYAYLKGTILFNP----DVPGLYASSH--------------- 190
Query: 188 IAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
I +Q L + + P+ +R ++ L LKSIP +L +LF R +IG
Sbjct: 191 --IGHLQQEAHQALWEVLEPWCPAGQSRLARVLLTASTLKSIPPSLLGDLFLRPVIG 245
>gi|78100924|pdb|1XIU|A Chain A, Crystal Structure Of The Agonist-Bound Ligand-Binding
Domain Of Biomphalaria Glabrata Rxr
gi|78100925|pdb|1XIU|B Chain B, Crystal Structure Of The Agonist-Bound Ligand-Binding
Domain Of Biomphalaria Glabrata Rxr
Length = 230
Score = 44.7 bits (104), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 14/91 (15%)
Query: 182 SCLRDVI-------AIAAIQGHTQI------FLNKYIHTVYPSQPTRFCKIQLILPRLKS 228
CLR V+ + A+Q Q+ L +Y + YP +P RF K+ L LP L+S
Sbjct: 136 GCLRAVVLFNPDAKGLTAVQEVEQLREKVYASLEEYTKSRYPEEPGRFAKLLLRLPALRS 195
Query: 229 IPSLVLEELFFRNIIGHNTTIKKTIWHMYKN 259
I LE LFF +IG + I + M +N
Sbjct: 196 IGLKCLEHLFFFKLIG-DQPIDTFLMEMLEN 225
>gi|226316409|gb|ACO44668.1| retinoid X receptor isoform 1 [Crangon crangon]
Length = 405
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 68/166 (40%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + + G ++ + H + F VL+E K
Sbjct: 238 VLLKAGWNELLIAAFSHRSIGVKDGIVLATGLVVHRSSAHQAGVGTIFDRVLSELVAKMK 297
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +R+I LF D R +S +D LR+ + A
Sbjct: 298 EMKMDKTELGCLRSIVLFN-------PDARGLTSCND-----VEILREKVYAA------- 338
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L +Y T YP +P RF K+ L LP L+SI LE LF +IG
Sbjct: 339 --LEEYTRTSYPHEPGRFAKLLLRLPALRSIGLKCLEYLFLFKLIG 382
>gi|426363508|ref|XP_004048881.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Gorilla gorilla
gorilla]
Length = 365
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 70/179 (39%), Gaps = 31/179 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 202 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 261
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHT 197
+ +D E +RAI LF +P+S L + + ++
Sbjct: 262 DMQMDKTELGCLRAIVLF----------------------NPDSKGLSNPAEVETLREKV 299
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 300 YASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 357
>gi|75017953|sp|Q8T5C6.1|RXR_BIOGL RecName: Full=Retinoic acid receptor RXR; AltName: Full=RXR-like
protein; AltName: Full=Retinoid X receptor; Short=BgRXR
gi|19386469|gb|AAL86461.1| RXR-like protein [Biomphalaria glabrata]
Length = 436
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 64/172 (37%), Gaps = 40/172 (23%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I G + G L+ + H + F VL E +
Sbjct: 273 ILLRAGWNELLIAGFSHRSIMAKDGILLATGLHVHRSSAHQAGVGTIFDRVLTELVAKMR 332
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RA+ LF D + A+Q Q
Sbjct: 333 DMKMDKTELGCLRAVVLFNP---------------------------DAKGLTAVQEVEQ 365
Query: 199 I------FLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
+ L +Y + YP +P RF K+ L LP L+SI LE LFF +IG
Sbjct: 366 LREKVYASLEEYTKSRYPEEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 417
>gi|197941308|gb|ACH78358.1| retinoid X receptor gamma [Sebastiscus marmoratus]
Length = 451
Score = 44.3 bits (103), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 66/178 (37%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
LL W EL I + ++ G L+ + H + F VL E K
Sbjct: 288 FLLRAGWNELLIASFSHRSVTVKDGILLATGLHVHRNSAHSAGVGSIFDRVLTELVSKMK 347
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF + L + + ++
Sbjct: 348 DMQMDKTELGCLRAIVLFNPDAKG---------------------LSNPPEVEGLREKVY 386
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 387 ASLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 443
>gi|226316411|gb|ACO44669.1| retinoid X receptor isoform 2 [Crangon crangon]
Length = 400
Score = 44.3 bits (103), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 68/166 (40%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + + G ++ + H + F VL+E K
Sbjct: 233 VLLKAGWNELLIAAFSHRSIGVKDGIVLATGLVVHRSSAHQAGVGTIFDRVLSELVAKMK 292
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +R+I LF D R +S +D LR+ + A
Sbjct: 293 EMKMDKTELGCLRSIVLFN-------PDARGLTSCND-----VEILREKVYAA------- 333
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L +Y T YP +P RF K+ L LP L+SI LE LF +IG
Sbjct: 334 --LEEYTRTSYPHEPGRFAKLLLRLPALRSIGLKCLEYLFLFKLIG 377
>gi|45708743|gb|AAH51670.1| NR2C2 protein [Homo sapiens]
gi|313882494|gb|ADR82733.1| Unknown protein [synthetic construct]
Length = 530
Score = 44.3 bits (103), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 14/96 (14%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 425 AFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRI 484
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLF 156
+ E + + Q N L+ID YEY Y++AI LF
Sbjct: 485 KQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLF 520
Score = 43.9 bits (102), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 437 LVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE 496
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L+ID YEY Y++AI LF
Sbjct: 497 FCNSMAKLDIDGYEYAYLKAIVLF 520
>gi|380014638|ref|XP_003691332.1| PREDICTED: uncharacterized protein LOC100870376 [Apis florea]
Length = 992
Score = 44.3 bits (103), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 20/111 (18%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ SW +LF LGLAQ +L L ++ S S+ + E + R Q
Sbjct: 413 LVRSSWGQLFTLGLAQCAYTLSLPSILTSIINHLQASIAQEKITASKVKSVTEHICRLQD 472
Query: 49 VLNEFKVLNIDPYEYDYIRAITLFKT----AFTSRRELAGHLLLAESWREL 95
++ L +D EY Y++A+TLF A R+++ +L +W EL
Sbjct: 473 CVSSLHKLQVDSVEYAYLKALTLFSADNVLAGVWRKKV--EVLQEAAWTEL 521
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 14/84 (16%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 132
L+ SW +LF LGLAQ +L L ++ S S+ + E + R Q
Sbjct: 413 LVRSSWGQLFTLGLAQCAYTLSLPSILTSIINHLQASIAQEKITASKVKSVTEHICRLQD 472
Query: 133 VLNEFKVLNIDPYEYDYIRAITLF 156
++ L +D EY Y++A+TLF
Sbjct: 473 CVSSLHKLQVDSVEYAYLKALTLF 496
>gi|194225999|ref|XP_001917400.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Equus caballus]
Length = 587
Score = 44.3 bits (103), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 70/178 (39%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 424 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 483
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF D++ L + + A++
Sbjct: 484 DMQMDKTELGCLRAIVLFNP-------DSKG--------------LSNPAEVEALREKVY 522
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 523 ASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 579
>gi|158962474|dbj|BAF91724.1| retinoid X receptor [Ornithodoros moubata]
Length = 453
Score = 44.3 bits (103), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 54/131 (41%), Gaps = 26/131 (19%)
Query: 130 FQSVLNE----FKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLR 185
F VL E + L +D E +RAI LF E + R S+
Sbjct: 338 FDRVLTELVAKMRELRMDRTELGCLRAIVLFNP----EARGLRCSAQ------------- 380
Query: 186 DVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
+ A++ L + YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 381 ----VEALRERVYAALEDHCRQQYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG- 435
Query: 246 NTTIKKTIWHM 256
+T I + M
Sbjct: 436 DTPIDNFLLSM 446
>gi|149036769|gb|EDL91387.1| rCG56527, isoform CRA_b [Rattus norvegicus]
Length = 607
Score = 44.3 bits (103), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 14/96 (14%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 439 AFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRI 498
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLF 156
+ E + + Q N L+ID YEY Y++AI LF
Sbjct: 499 KQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLF 534
Score = 43.9 bits (102), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 451 LVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE 510
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L+ID YEY Y++AI LF
Sbjct: 511 FCNSMAKLDIDGYEYAYLKAIVLF 534
>gi|405953743|gb|EKC21345.1| Retinoic acid receptor RXR-alpha [Crassostrea gigas]
Length = 446
Score = 44.3 bits (103), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 65/166 (39%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I G + + G L+ + H + F VL E +
Sbjct: 282 ILLRAGWNELLIAGFSHRSIVVKDGILLATGLHVHRSSAHQAGVGTIFDRVLTELVAKMR 341
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF D + S+ V + ++
Sbjct: 342 EMKMDKTELGCLRAIVLFNP-------DAKGVSA--------------VSEVEQLREKVY 380
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L +Y YP +P RF K+ L LP L+SI LE LFF +IG
Sbjct: 381 ASLEEYCKMHYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 426
>gi|383862587|ref|XP_003706765.1| PREDICTED: uncharacterized protein LOC100878424 [Megachile
rotundata]
Length = 991
Score = 44.3 bits (103), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 20/111 (18%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ SW +LF LGLAQ +L L ++ S S+ + E + R Q
Sbjct: 412 LVRSSWGQLFTLGLAQCAYTLSLPSILTSIINHLQASIAQEKITASKVKSVTEHICRLQD 471
Query: 49 VLNEFKVLNIDPYEYDYIRAITLFKT----AFTSRRELAGHLLLAESWREL 95
++ L +D EY Y++A+TLF A R+++ +L +W EL
Sbjct: 472 CVSSLHKLQVDSVEYAYLKALTLFSADNVLAGVWRKKV--EVLQEAAWSEL 520
Score = 43.9 bits (102), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 14/84 (16%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 132
L+ SW +LF LGLAQ +L L ++ S S+ + E + R Q
Sbjct: 412 LVRSSWGQLFTLGLAQCAYTLSLPSILTSIINHLQASIAQEKITASKVKSVTEHICRLQD 471
Query: 133 VLNEFKVLNIDPYEYDYIRAITLF 156
++ L +D EY Y++A+TLF
Sbjct: 472 CVSSLHKLQVDSVEYAYLKALTLF 495
>gi|355703292|gb|EHH29783.1| hypothetical protein EGK_10292, partial [Macaca mulatta]
Length = 227
Score = 44.3 bits (103), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 184 LRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNII 243
L D + ++Q Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++
Sbjct: 141 LSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLV 200
Query: 244 GHNTTIKKTIWHM 256
G T I+ I M
Sbjct: 201 G-KTPIETLIRDM 212
>gi|170587670|ref|XP_001898597.1| Steroid receptor seven-up type 2 [Brugia malayi]
gi|158593867|gb|EDP32461.1| Steroid receptor seven-up type 2, putative [Brugia malayi]
Length = 530
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 73/168 (43%), Gaps = 32/168 (19%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC---------KSRHVDIEEEVIRFQSVLNEF 137
LL SW ELF++ AQ+ + + L+ + + V + + FQ +
Sbjct: 354 LLRASWAELFVINAAQFGMPVHVAPLLAASGLHSSPPLPTDQLVVFMDRIRVFQGQIERL 413
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGH 196
K L +D E+ ++A+ LF + C L DVI + IQ
Sbjct: 414 KALQMDLAEFCSLKAVILFSV----------------------DCCGLNDVIRVETIQEK 451
Query: 197 TQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
Q L +Y T Q RF ++ L LP L+SI + V+E+LFF ++G
Sbjct: 452 VQSALEEYCRTQKQLQVGRFGRLLLRLPSLRSISASVIEQLFFVKLVG 499
>gi|1046295|gb|AAC59720.1| retinoid X receptor alpha [Danio rerio]
gi|1583308|prf||2120366C retinoid X receptor:ISOTYPE=alpha
Length = 441
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 64/166 (38%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + ++ G L+ + H F VL E +
Sbjct: 278 ILLRAGWNELLIASFSHRSVTVKDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMR 337
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N + + SE + A++
Sbjct: 338 DMQMDKTELGCLRAIVLF----------NPDAKGLSNPSE-----------VEALREKVY 376
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 377 ASLEGYTKHNYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 422
>gi|351702679|gb|EHB05598.1| Retinoic acid receptor RXR-gamma-A [Heterocephalus glaber]
Length = 616
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 21/112 (18%)
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
++++ + + +D E +RAI LF D++ L + + A
Sbjct: 507 LVSKMRDMQMDKTELGCLRAIVLFN-------PDSKG--------------LSNPAEVEA 545
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
++ L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 546 LREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 597
>gi|348504634|ref|XP_003439866.1| PREDICTED: retinoic acid receptor RXR-gamma-B-like isoform 1
[Oreochromis niloticus]
Length = 453
Score = 43.9 bits (102), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 63/166 (37%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + ++ G L+ + H F VL E K
Sbjct: 290 ILLRAGWNELLIASFSHRSVTVKDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMK 349
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N + + SE + ++
Sbjct: 350 DMQMDKTELGCLRAIVLF----------NPDAKGLSNPSE-----------VEGLREKVY 388
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 389 ASLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 434
>gi|340710944|ref|XP_003394042.1| PREDICTED: hypothetical protein LOC100642195 [Bombus terrestris]
Length = 992
Score = 43.9 bits (102), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 20/111 (18%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ SW +LF LGLAQ +L L ++ S S+ + E + R Q
Sbjct: 413 LVRSSWGQLFTLGLAQCAYTLSLPSILTSIINHLQASIAQEKITASKVKSVTEHICRLQD 472
Query: 49 VLNEFKVLNIDPYEYDYIRAITLFKT----AFTSRRELAGHLLLAESWREL 95
++ L +D EY Y++A+TLF A R+++ +L +W EL
Sbjct: 473 CVSSLHKLQVDSVEYAYLKALTLFSADNVLAGVWRKKV--EVLQEAAWTEL 521
Score = 43.9 bits (102), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 14/84 (16%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 132
L+ SW +LF LGLAQ +L L ++ S S+ + E + R Q
Sbjct: 413 LVRSSWGQLFTLGLAQCAYTLSLPSILTSIINHLQASIAQEKITASKVKSVTEHICRLQD 472
Query: 133 VLNEFKVLNIDPYEYDYIRAITLF 156
++ L +D EY Y++A+TLF
Sbjct: 473 CVSSLHKLQVDSVEYAYLKALTLF 496
>gi|4102801|gb|AAD01591.1| retinoid X receptor gamma [Rattus norvegicus]
Length = 107
Score = 43.9 bits (102), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 51/121 (42%), Gaps = 22/121 (18%)
Query: 136 EFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQG 195
+ K + +D E +RAI LF N + + SE + +++
Sbjct: 1 KMKDMRMDKSELGCLRAIVLF----------NPDAKGLSNPSE-----------VESLRE 39
Query: 196 HTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWH 255
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I +
Sbjct: 40 KVYATLEPYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLME 98
Query: 256 M 256
M
Sbjct: 99 M 99
>gi|158302672|dbj|BAF85823.1| ultraspiracle [Liocheles australasiae]
Length = 410
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 65/167 (38%), Gaps = 30/167 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + + G ++ S H + F VL E +
Sbjct: 249 VLLKAGWNELLIAAFSHRSIDVKDGIVLASGLIVHRNSAHGAGVGTIFDRVLTELVAKMR 308
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHT 197
+N+D E +RAI LF +PE+ L+ V + ++
Sbjct: 309 EMNMDKTELGCLRAIVLF----------------------NPEAKGLKSVTHVENLRERV 346
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y Y QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 347 YSALEDYCRQNYFDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 393
>gi|296207167|ref|XP_002750522.1| PREDICTED: nuclear receptor subfamily 0 group B member 2
[Callithrix jacchus]
Length = 257
Score = 43.9 bits (102), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 40/177 (22%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEE-------------------V 127
LL W LF+LGLAQ + ++ E + + +E+ V
Sbjct: 87 LLQGGWGPLFLLGLAQDAVTFEVAEAPVPSILKKILLEDPSSSGGSGQLPDRPQPSLAAV 146
Query: 128 IRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDV 187
Q L F L + P EY ++ LF + S H
Sbjct: 147 QWLQCCLESFWSLELSPKEYACLKGTILFNPDLPGL-----------HASSH-------- 187
Query: 188 IAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
I +Q L + P+ R ++ L+ LKSIP+ +LE+LFFR IIG
Sbjct: 188 --IEHLQQEAHWALYDVLEPWCPAAQGRLARVLLMASTLKSIPTSLLEDLFFRPIIG 242
>gi|170048338|ref|XP_001851983.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167870434|gb|EDS33817.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 325
Score = 43.9 bits (102), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 184 LRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSI 229
L DV I ++Q +Q L +Y + YP+QPTRF K+ L LP L+++
Sbjct: 52 LSDVAHIESLQEKSQCALEEYCRSQYPNQPTRFGKLLLRLPSLRTV 97
>gi|328786232|ref|XP_392769.4| PREDICTED: hypothetical protein LOC409246 [Apis mellifera]
Length = 992
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 20/111 (18%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ SW +LF LGLAQ +L L ++ S S+ + E + R Q
Sbjct: 413 LVRSSWGQLFTLGLAQCAYTLSLPSILTSIINHLQASIAQEKITASKVKSVTEHICRLQD 472
Query: 49 VLNEFKVLNIDPYEYDYIRAITLFKT----AFTSRRELAGHLLLAESWREL 95
++ L +D EY Y++A+TLF A R+++ +L +W EL
Sbjct: 473 CVSSLHKLQVDSIEYAYLKALTLFSADNVLAGVWRKKV--EVLQEAAWTEL 521
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 14/84 (16%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 132
L+ SW +LF LGLAQ +L L ++ S S+ + E + R Q
Sbjct: 413 LVRSSWGQLFTLGLAQCAYTLSLPSILTSIINHLQASIAQEKITASKVKSVTEHICRLQD 472
Query: 133 VLNEFKVLNIDPYEYDYIRAITLF 156
++ L +D EY Y++A+TLF
Sbjct: 473 CVSSLHKLQVDSIEYAYLKALTLF 496
>gi|409194686|gb|AFV31633.1| retinoic X receptor gamma, partial [Acanthopagrus schlegelii]
Length = 453
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 61/166 (36%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + ++ G L+ + H F VL E K
Sbjct: 290 ILLRAGWNELLIASFSHRSVTVKDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMK 349
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF + L + + ++
Sbjct: 350 DMQMDKTELGCLRAIVLFNPDAKG---------------------LSNPPEVEGLREKVY 388
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 389 ASLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 434
>gi|340722756|ref|XP_003399768.1| PREDICTED: COUP transcription factor 1-like [Bombus terrestris]
Length = 392
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVES--CKSRHVDIEEEVIRFQSVLNEFKVLNID 59
+LL ESW ELF+L AQ+ +D LV + R + +EV + + +L + +L +D
Sbjct: 242 ILLEESWSELFVLTAAQWNFPVDESTLVPNDLSSERKETLVDEVRKLRELLAKCALLRVD 301
Query: 60 PYEYDYIRAITLFK 73
EY ++AI LFK
Sbjct: 302 HSEYACLKAIVLFK 315
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVES--CKSRHVDIEEEVIRFQSVLNEFKVLNID 143
+LL ESW ELF+L AQ+ +D LV + R + +EV + + +L + +L +D
Sbjct: 242 ILLEESWSELFVLTAAQWNFPVDESTLVPNDLSSERKETLVDEVRKLRELLAKCALLRVD 301
Query: 144 PYEYDYIRAITLFK 157
EY ++AI LFK
Sbjct: 302 HSEYACLKAIVLFK 315
>gi|307181122|gb|EFN68856.1| MAP kinase-activated protein kinase 2 [Camponotus floridanus]
Length = 962
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 24/106 (22%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ SW +LFILGLAQ +L L ++ S + + E + R Q
Sbjct: 376 LVRSSWGQLFILGLAQCAYTLSLPSILTSIINHLQASIAQEKVTAGKVKCVTEHICRLQD 435
Query: 49 VLNEFKVLNIDPYEYDYIRAITLFKTAFTSRRELAGHLLLAESWRE 94
++ L +D EY Y++A+TLF + +L SWR+
Sbjct: 436 CVSSLHKLQVDSVEYAYLKALTLF----------SADNILTGSWRK 471
>gi|218683823|gb|ACL00866.1| orphan nuclear receptor Dax-1 [Kryptolebias marmoratus]
Length = 308
Score = 43.9 bits (102), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 78/193 (40%), Gaps = 43/193 (22%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESC------------------KSRHVDIEEEV 127
LL+ W L +LGLAQ + E VE H + V
Sbjct: 135 LLIRSGWAPLLVLGLAQDRVDFETTETVEPSMLQRILTGLPERQSDAPSGQSHAPLGVSV 194
Query: 128 IRFQSV---LNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCL 184
+ +++ L + ++I EY Y++ LF + DG L
Sbjct: 195 VDIEAIKAFLKKCWSVDISTKEYAYLKGAVLFNPDL--------------DG-------L 233
Query: 185 RDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
R + I +++ LN+++ ++ TRF K+ + L L++I V+ +LFFR +IG
Sbjct: 234 RCLHYIQSLRREAHQALNEHVRLIHHEDTTRFAKLLIALSMLRAISPPVVAQLFFRPVIG 293
Query: 245 HNTTIKKTIWHMY 257
I++ + M+
Sbjct: 294 -TVNIEEVLMEMF 305
>gi|105872963|gb|ABF74729.1| retinoid X receptor-like protein [Daphnia magna]
gi|131665089|dbj|BAF49028.1| ultraspiracle [Daphnia magna]
gi|321453064|gb|EFX64341.1| hypothetical protein DAPPUDRAFT_219609 [Daphnia pulex]
Length = 400
Score = 43.9 bits (102), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 73/178 (41%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + + G ++ + H + + F VL E +
Sbjct: 238 VLLRAGWNELLIAAFSHRSVGVKDGIVLATGLVIHRNSAHQAGVGSIFDRVLTELVSKMR 297
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF + P+ L+ V + A++
Sbjct: 298 EMKLDLAELGCLRAIILF--------------------NPDPKG-LKSVSQVEALREKVY 336
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L +Y T Y +P RF K+ L LP L+SI LE LFF +IG +T I+ + M
Sbjct: 337 ATLEEYTRTNYADEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIESFLLEM 393
>gi|410921388|ref|XP_003974165.1| PREDICTED: retinoic acid receptor RXR-gamma-B-like [Takifugu
rubripes]
Length = 462
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 63/166 (37%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + ++ G L+ + H F VL E K
Sbjct: 299 ILLRAGWNELLIASFSHRSVTVKDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMK 358
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF + G +P+ + ++
Sbjct: 359 DMQMDKTELGCLRAIVLFNPDAK--------------GLSNPQE-------VEGLREKVY 397
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 398 ASLESYTKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 443
>gi|3098336|gb|AAC15589.1| retinoid X receptor [Amblyomma americanum]
Length = 414
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 73/179 (40%), Gaps = 33/179 (18%)
Query: 87 LLAESWRELFILGLAQYLPSLDLG-----ELVESCKSRHV----DIEEEVIRFQSVLNEF 137
LL W EL I + ++ G LV S H DI + V+ ++ +
Sbjct: 253 LLKAGWNELLIAAFSHRSVAVRDGIVLATGLVVQRHSAHGAGVGDIFDRVL--AELVAKM 310
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ + +D E +RA+ LF + LR+ + A++
Sbjct: 311 RDMKMDKTELGCLRAVVLFNPDAKG---------------------LRNATRVEALREKV 349
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L ++ +P QP RF K+ L LP L+SI LE LFF +IG +T I + +M
Sbjct: 350 YAALEEHCRRHHPDQPGRFGKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDSFLLNM 407
>gi|359070758|ref|XP_002691733.2| PREDICTED: retinoic acid receptor RXR-alpha [Bos taurus]
Length = 756
Score = 43.9 bits (102), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 65/166 (39%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 593 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 652
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF D++ L + + A++
Sbjct: 653 DMQMDKTELGCLRAIVLFN-------PDSKG--------------LSNPAEVEALREKVY 691
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 692 ASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 737
>gi|350400753|ref|XP_003485947.1| PREDICTED: hypothetical protein LOC100747039 [Bombus impatiens]
Length = 992
Score = 43.9 bits (102), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 20/111 (18%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ SW +LF LGLAQ +L L ++ S S+ + E + R Q
Sbjct: 413 LVRTSWGQLFTLGLAQCAYTLSLPSILTSIINHLQASIAQEKITASKVKSVTEHICRLQD 472
Query: 49 VLNEFKVLNIDPYEYDYIRAITLFKT----AFTSRRELAGHLLLAESWREL 95
++ L +D EY Y++A+TLF A R+++ +L +W EL
Sbjct: 473 CVSSLHKLQVDSVEYAYLKALTLFSADNVLAGVWRKKV--EVLQEAAWTEL 521
Score = 43.5 bits (101), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 14/84 (16%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 132
L+ SW +LF LGLAQ +L L ++ S S+ + E + R Q
Sbjct: 413 LVRTSWGQLFTLGLAQCAYTLSLPSILTSIINHLQASIAQEKITASKVKSVTEHICRLQD 472
Query: 133 VLNEFKVLNIDPYEYDYIRAITLF 156
++ L +D EY Y++A+TLF
Sbjct: 473 CVSSLHKLQVDSVEYAYLKALTLF 496
>gi|449478039|ref|XP_002196179.2| PREDICTED: retinoic acid receptor RXR-alpha [Taeniopygia guttata]
Length = 439
Score = 43.5 bits (101), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 65/166 (39%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 276 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 335
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF D++ L + + A++
Sbjct: 336 DMLMDKTELGCLRAIVLFN-------PDSKG--------------LSNPAEVEALREKVY 374
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 375 ASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 420
>gi|395750689|ref|XP_002828930.2| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Pongo
abelii]
Length = 215
Score = 43.5 bits (101), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 184 LRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNII 243
L D + ++Q Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++
Sbjct: 129 LSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLV 188
Query: 244 GHNTTIKKTIWHM 256
G T I+ I M
Sbjct: 189 G-KTPIETLIRDM 200
>gi|349605259|gb|AEQ00558.1| Nuclear receptor subfamily 2 group C member 1-like protein, partial
[Equus caballus]
Length = 323
Score = 43.5 bits (101), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
Query: 8 WRELFILGLAQYLPSLDLGELVES---C------KSRHVDIEEEVIRFQSVLNEFKVLNI 58
W ELF LGLAQ +++ ++ + C + R + E + + Q N L I
Sbjct: 249 WNELFTLGLAQCWQVMNVATILATFVNCLHSSLQQERRKLLMEHIFKLQEFCNSMVKLCI 308
Query: 59 DPYEYDYIRAITLF 72
D YEY Y++AI LF
Sbjct: 309 DGYEYAYLKAIVLF 322
Score = 43.5 bits (101), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
Query: 92 WRELFILGLAQYLPSLDLGELVES---C------KSRHVDIEEEVIRFQSVLNEFKVLNI 142
W ELF LGLAQ +++ ++ + C + R + E + + Q N L I
Sbjct: 249 WNELFTLGLAQCWQVMNVATILATFVNCLHSSLQQERRKLLMEHIFKLQEFCNSMVKLCI 308
Query: 143 DPYEYDYIRAITLF 156
D YEY Y++AI LF
Sbjct: 309 DGYEYAYLKAIVLF 322
>gi|432866384|ref|XP_004070824.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
C member 2-like [Oryzias latipes]
Length = 609
Score = 43.5 bits (101), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 75/184 (40%), Gaps = 30/184 (16%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSVL 134
AF++ + A L+ W ELF LGLAQ ++L + +++
Sbjct: 441 AFSALGQEANTSLVRACWNELFTLGLAQCAHVMNLSTI-----------------LAAII 483
Query: 135 NEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQ 194
N + D + T+ K ++ E K +S + HP + I +Q
Sbjct: 484 NHLQSSIQDGMDK------TISKXKLKKETKAKLLVASKN----HPG--VDSSGQIEKLQ 531
Query: 195 GHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIW 254
+ L Y+ YP R +I LP L+ + S + EELFF +IG N +I I
Sbjct: 532 EKALMELQDYVQKTYPDDTYRLTRILTRLPALRLMNSSITEELFFTGLIG-NVSIDSIIP 590
Query: 255 HMYK 258
++ K
Sbjct: 591 YILK 594
>gi|340025441|gb|AEK27051.1| retinoid X receptor gamma [Lateolabrax japonicus]
Length = 453
Score = 43.5 bits (101), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 66/178 (37%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + ++ G L+ + H F VL E K
Sbjct: 290 ILLRAGWNELLIASFSHRSVTVKDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMK 349
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF + L + + A++
Sbjct: 350 DMQMDKTELGCLRAIVLFNPDAKG---------------------LSNPPEVEALREKVY 388
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ LP L+SI LE LFF +IG +T I + M
Sbjct: 389 ASLESYTKQKYPDQPGRFAKLVFRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 445
>gi|325930183|gb|ADZ45550.1| retinoid X receptor alpha [Taeniopygia guttata]
Length = 467
Score = 43.5 bits (101), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 66/167 (39%), Gaps = 30/167 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 304 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 363
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHT 197
+ +D E +RAI LF +P+S L + + A++
Sbjct: 364 DMLMDKTELGCLRAIVLF----------------------NPDSKGLSNPAEVEALREKV 401
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 402 YASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 448
>gi|344241392|gb|EGV97495.1| Nuclear receptor subfamily 2 group F member 6 [Cricetulus griseus]
Length = 91
Score = 43.5 bits (101), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 181 ESC-LRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFF 239
++C L D + ++Q Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF
Sbjct: 2 DACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 61
Query: 240 RNIIGHNTTIKKTIWHM 256
++G T I+ I M
Sbjct: 62 MRLVG-KTPIETLIRDM 77
>gi|130497366|ref|NP_001076416.1| nuclear receptor subfamily 0 group B member 1 [Danio rerio]
gi|126632103|gb|AAI33943.1| LOC100001692 protein [Danio rerio]
Length = 264
Score = 43.5 bits (101), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 70/176 (39%), Gaps = 37/176 (21%)
Query: 85 HLLLAESWRELFILGLAQ----------YLPS-----LDLGELVESCKSRHVDIE-EEVI 128
H L+ W L +LG+AQ PS L G+ + +S + + +V
Sbjct: 95 HTLVRSGWAPLLVLGMAQDRIDFETSETQEPSMLQRILTSGQDKQDNQSHNGGVALTDVQ 154
Query: 129 RFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVI 188
+ L + L+I EY Y++ LF + L+
Sbjct: 155 GIKMFLRKCWGLDISTKEYAYLKGAILFNPDVAG---------------------LQCQH 193
Query: 189 AIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
I A+Q LN+Y+ ++ RF K+ L L L+SI + V+ LFF+ +IG
Sbjct: 194 YIQALQSEANQALNEYVKMIHRGDSARFAKLFLALSMLRSINANVVAGLFFKPVIG 249
>gi|148565467|gb|ABQ88373.1| Dax1 [Trachemys scripta]
Length = 98
Score = 43.5 bits (101), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 21/105 (20%)
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQI 199
L+I EY Y++ LF + L+ V I +Q Q
Sbjct: 4 LDIGTKEYAYLKGTVLFNPDLPG---------------------LQCVQYIQGLQREAQQ 42
Query: 200 FLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
LN+++ ++ RF K+ ++L L+SI + V+ ELFFR IIG
Sbjct: 43 ALNEHVTLIHQGDQARFAKLNVVLSLLRSINANVIAELFFRPIIG 87
>gi|3098334|gb|AAC15588.1| retinoid X receptor [Amblyomma americanum]
Length = 400
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 179 HPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELF 238
+PE+ +G + L ++ YP QP RF K+ L LP L+SI LE LF
Sbjct: 317 NPEAKGLRTCPSGGPEGESVSALEEHCRQQYPDQPGRFAKLLLRLPALRSIGLKCLEHLF 376
Query: 239 FRNIIGHNTTIKKTIWHM 256
F +IG +T I + M
Sbjct: 377 FFKLIG-DTPIDNFLLSM 393
>gi|332019107|gb|EGI59632.1| Nuclear receptor subfamily 2 group C member 2 [Acromyrmex
echinatior]
Length = 554
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 24/113 (21%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ SW +LF LGLAQ +L L ++ S + + E + R Q
Sbjct: 383 LVRSSWGQLFTLGLAQCAYTLSLPSILTSIINHLQASIAQEKVTAGKVKCVTEHIWRLQD 442
Query: 49 VLNEFKVLNIDPYEYDYIRAITLFKTAFTSRRELAG------HLLLAESWREL 95
+N L +D EY Y++A+TL F++ LAG +L +W EL
Sbjct: 443 CVNSLHKLQVDSVEYAYLKALTL----FSADNVLAGIWHKKVEVLQEAAWTEL 491
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 14/84 (16%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 132
L+ SW +LF LGLAQ +L L ++ S + + E + R Q
Sbjct: 383 LVRSSWGQLFTLGLAQCAYTLSLPSILTSIINHLQASIAQEKVTAGKVKCVTEHIWRLQD 442
Query: 133 VLNEFKVLNIDPYEYDYIRAITLF 156
+N L +D EY Y++A+TLF
Sbjct: 443 CVNSLHKLQVDSVEYAYLKALTLF 466
>gi|150387545|gb|ABR68259.1| short heterodimer partner, partial [Monodelphis domestica]
Length = 105
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 13/87 (14%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEE-------------VIRFQS 48
LLLA W LF+LGLAQ + ++ E+ + + +EE V R Q
Sbjct: 19 LLLANCWAPLFLLGLAQDAVTFEVTEMPAPSMLKKILLEERSPEPQRPQPTLAGVHRLQC 78
Query: 49 VLNEFKVLNIDPYEYDYIRAITLFKTA 75
L+ F +++ P EY Y++ LF
Sbjct: 79 CLHTFWSMDLSPKEYAYLKGAILFNPG 105
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 13/84 (15%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEE-------------VIRFQS 132
LLLA W LF+LGLAQ + ++ E+ + + +EE V R Q
Sbjct: 19 LLLANCWAPLFLLGLAQDAVTFEVTEMPAPSMLKKILLEERSPEPQRPQPTLAGVHRLQC 78
Query: 133 VLNEFKVLNIDPYEYDYIRAITLF 156
L+ F +++ P EY Y++ LF
Sbjct: 79 CLHTFWSMDLSPKEYAYLKGAILF 102
>gi|440905970|gb|ELR56286.1| Nuclear receptor subfamily 0 group B member 2 [Bos grunniens mutus]
Length = 267
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 70/177 (39%), Gaps = 40/177 (22%)
Query: 87 LLAESWRELFILGLAQ----------YLPSLDLGELVE-----SCKSRHVDIEE----EV 127
LL W LF+LGLAQ +PS+ L+E + S+ D + EV
Sbjct: 97 LLRGCWGPLFLLGLAQDTVTFQVAEVPMPSILKKILLEKPSNGAGSSQRPDRPQPSLAEV 156
Query: 128 IRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDV 187
Q L F L + P EY Y++ LF +V +SS
Sbjct: 157 QWLQCCLESFWSLELGPKEYAYLKGTILFNP----DVPGLYASSH--------------- 197
Query: 188 IAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
I +Q L + + P+ +R ++ L LKSIP +L +LF R +IG
Sbjct: 198 --IRHLQQEAHQALWEVLEPWCPAGQSRLARVLLTASTLKSIPPSLLGDLFLRPVIG 252
>gi|84579197|dbj|BAE73032.1| hypothetical protein [Macaca fascicularis]
Length = 462
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 70/179 (39%), Gaps = 31/179 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 299 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 358
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHT 197
+ +D E +RAI LF +P+S L + + A++
Sbjct: 359 DMQMDKTELGCLRAIVLF----------------------NPDSKGLSNPAEVEALREKV 396
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF + G +T I + M
Sbjct: 397 YASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLTG-DTPIDTFLMEM 454
>gi|403257407|ref|XP_003921311.1| PREDICTED: nuclear receptor subfamily 0 group B member 2 [Saimiri
boliviensis boliviensis]
Length = 257
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 64/177 (36%), Gaps = 40/177 (22%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEE-------------------V 127
LL W LF+LGLAQ + ++ E + + +EE V
Sbjct: 87 LLQGGWGPLFLLGLAQDAVTFEVAEAPVPSILKKILLEEPSSSGGSGPLPDRPQPSLAAV 146
Query: 128 IRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDV 187
Q L F L + P EY ++ LF + S H
Sbjct: 147 QWLQCCLESFWSLELSPKEYACLKGTILFNPDLPGL-----------HASSH-------- 187
Query: 188 IAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
I +Q L + P+ R ++ L+ LKSIP+ +L +LFFR IIG
Sbjct: 188 --IEHLQQEAHWALCDVLEPWCPAAQGRLARVLLMASTLKSIPTSLLGDLFFRPIIG 242
>gi|440904694|gb|ELR55168.1| Retinoic acid receptor RXR-alpha, partial [Bos grunniens mutus]
Length = 485
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 21/112 (18%)
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
++++ + + +D E +RAI LF D++ L + + A
Sbjct: 376 LVSKMRDMQMDKTELGCLRAIVLFN-------PDSKG--------------LSNPAEVEA 414
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
++ L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 415 LREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 466
>gi|118343980|ref|NP_001071809.1| nuclear receptor [Ciona intestinalis]
gi|70571095|dbj|BAE06678.1| nuclear receptor [Ciona intestinalis]
Length = 507
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 52/126 (41%), Gaps = 26/126 (20%)
Query: 130 FQSVLNE----FKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLR 185
F VL E + +++D E +RAI LF +D L
Sbjct: 369 FDRVLTELIAKMRDMSMDRTELGCLRAIVLFNPDAKD---------------------LT 407
Query: 186 DVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
D I ++ L Y + YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 408 DPAYIETLREKVYASLEVYCKSKYPDQAGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG- 466
Query: 246 NTTIKK 251
NT I +
Sbjct: 467 NTPIDQ 472
>gi|194332487|ref|NP_001123685.1| retinoic acid receptor RXR-gamma [Sus scrofa]
gi|112820329|gb|ABI24018.1| retinoid X receptor gamma [Sus scrofa]
Length = 463
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 62/166 (37%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + S+ G L+ + H F VL E K
Sbjct: 300 ILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMK 359
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+D E +RA+ LF N + + SE + ++
Sbjct: 360 DTQMDKSELGCLRAVVLF----------NPDAKGLSNPSE-----------VETLREKVY 398
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 399 ATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 444
>gi|71040960|gb|AAZ20371.1| RXRd nuclear hormone receptor [Gecarcinus lateralis]
Length = 432
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 68/166 (40%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G ++ + H + F VL+E K
Sbjct: 263 VLLKAGWNELLIASFSHRSMGVEDGIVLATGLVIHRSSAHQAGVGAIFDRVLSELVAKMK 322
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ ID E +R+I LF D + + +D LR+ + A
Sbjct: 323 EMKIDKTELGCLRSIVLFN-------PDAKGLNCCND-----VEILREKVYAA------- 363
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L +Y T YP +P RF K+ L LP L+SI LE LF +IG
Sbjct: 364 --LEEYTRTTYPDEPGRFAKLLLRLPALRSIGLKCLEYLFLFKLIG 407
>gi|290760683|gb|ADD59926.1| retinoid X receptor alpha, partial [Orcinus orca]
Length = 130
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 48/119 (40%), Gaps = 25/119 (21%)
Query: 130 FQSVLNEF----KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLR 185
F VL E + + +D E +RAI LF N S + +E
Sbjct: 25 FDRVLTELVSKVRDMQMDKTELGCLRAIVLF----------NPDSKGLSNPAE------- 67
Query: 186 DVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
+ ++ L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 68 ----VETLREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 122
>gi|345497210|ref|XP_001599315.2| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Nasonia
vitripennis]
Length = 417
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVES--CKSRHVDIEEEVIRFQSVLNEFKVLNID 59
+LL ESW ELF+L AQ+ ++ +L+ + R + +E R + +L +L ID
Sbjct: 267 ILLEESWCELFVLTAAQWNFPVEESQLIPAHLSPDRKQILSDEARRLRELLARCAILRID 326
Query: 60 PYEYDYIRAITLFK 73
EY ++AI LFK
Sbjct: 327 HSEYACLKAIVLFK 340
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVES--CKSRHVDIEEEVIRFQSVLNEFKVLNID 143
+LL ESW ELF+L AQ+ ++ +L+ + R + +E R + +L +L ID
Sbjct: 267 ILLEESWCELFVLTAAQWNFPVEESQLIPAHLSPDRKQILSDEARRLRELLARCAILRID 326
Query: 144 PYEYDYIRAITLFK 157
EY ++AI LFK
Sbjct: 327 HSEYACLKAIVLFK 340
>gi|328698474|ref|XP_001948311.2| PREDICTED: nuclear receptor subfamily 2 group C member 2-like
[Acyrthosiphon pisum]
Length = 486
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 73/168 (43%), Gaps = 37/168 (22%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------------KSRHVDIEEEVIRFQS 48
LL SW +LFILGL Q +L L ++ S S+ ++ + + R Q
Sbjct: 308 LLKSSWSQLFILGLTQCAQALSLIPVLSSMITHLQNDEIHNSPNSSKAKELIDYLNRIQD 367
Query: 49 VLNEFKVLNIDPYEYDYIRAITLFKTAFTSRR------------ELAGHLLLAESWRELF 96
+ E + + ++ EY Y++ I+LF T S R EL H L+ E E
Sbjct: 368 YITEMENIEVNDVEYAYLKLISLFNTDNPSERQQLYKLQEKAVKELKQH-LIKECNDEHR 426
Query: 97 ILGLAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLNIDP 144
I L LP+L +S +I EE+ F S+L F++ + P
Sbjct: 427 IAILLLRLPTL---------RSLQPNIIEEIF-FSSLLGSFQIDAVIP 464
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 76/172 (44%), Gaps = 38/172 (22%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------------KSRHVDIEEEVIRFQS 132
LL SW +LFILGL Q +L L ++ S S+ ++ + + R Q
Sbjct: 308 LLKSSWSQLFILGLTQCAQALSLIPVLSSMITHLQNDEIHNSPNSSKAKELIDYLNRIQD 367
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
+ E + + ++ EY Y++ I+LF T D+ SE + A+
Sbjct: 368 YITEMENIEVNDVEYAYLKLISLFNT---------------DNPSERQQLYKLQEKAVKE 412
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
++ H L K + + R + L LP L+S+ ++EE+FF +++G
Sbjct: 413 LKQH----LIKECNDEH-----RIAILLLRLPTLRSLQPNIIEEIFFSSLLG 455
>gi|383848789|ref|XP_003700030.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like [Megachile
rotundata]
Length = 427
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 65/166 (39%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
LLL W EL I + + G ++ + + H + ++ F VL+E +
Sbjct: 265 LLLRAGWNELLIASFSHRSIDVKDGIVLATGITVHRNSAQQAGVGTIFDRVLSELVSKMR 324
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +R+I LF + L+ + + ++
Sbjct: 325 EMKMDRTELGCLRSIILFNPEVRG---------------------LKSIQEVTLLREKIY 363
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y +P P RF K+ L LP ++SI LE LFF +IG
Sbjct: 364 AALEGYCRVAWPDDPGRFAKLLLRLPAIRSIGLKCLEHLFFFKMIG 409
>gi|348533848|ref|XP_003454416.1| PREDICTED: retinoic acid receptor RXR-beta-A-like isoform 1
[Oreochromis niloticus]
Length = 412
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 69/176 (39%), Gaps = 27/176 (15%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR-FQSVL----NEFKVL 140
+LL W EL I + L G L+ S R V F VL N+ + +
Sbjct: 251 ILLRAGWNELLIASFSHRSIPLKDGVLLASELQRDSAHSAGVGAIFDRVLTELVNKMRDM 310
Query: 141 NIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIF 200
+D E +RAI LF D + S++ + + ++
Sbjct: 311 QMDKIELGCLRAIVLFNP-------DAKGLSNTGE--------------VELLREKVYAS 349
Query: 201 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP Q RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 350 LEAYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 404
>gi|184161287|gb|ACC68675.1| nuclear receptor subfamily 0 group B member 1 [Chrysemys picta]
Length = 89
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%)
Query: 190 IAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
I +Q Q LN++I ++ RF K+ ++L L+SI + V+ ELFFR IIG
Sbjct: 24 IQGLQREAQQALNEHITLIHRGDQARFAKLNVVLSLLRSINANVIAELFFRPIIG 78
>gi|351702441|gb|EHB05360.1| Nuclear receptor subfamily 2 group F member 6 [Heterocephalus
glaber]
Length = 180
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 176 GSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLE 235
G++ L D + ++Q Q+ L +Y+ YP+QP RF ++ L LP L+++P+ ++
Sbjct: 86 GTQQDACGLSDPAHVESLQEKAQVALTEYVRAQYPTQPQRFGRLLLRLPALRAVPASLIS 145
Query: 236 ELFFRNIIGHNTTIKKTIWHM 256
+LFF ++G T I+ I M
Sbjct: 146 QLFFMRLVG-KTPIETLIRDM 165
>gi|449672836|ref|XP_002165675.2| PREDICTED: retinoic acid receptor RXR-like [Hydra magnipapillata]
Length = 502
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 78/179 (43%), Gaps = 28/179 (15%)
Query: 87 LLAESWRELFILGLA-QYLPS----LDLGELVESCKSRHVDIEEEVIR-FQSVLNEFKVL 140
+L +W EL I L + L S L+ G V + IE + R F VL+ K L
Sbjct: 345 VLQSNWSELLIGALCFRSLTSNGLMLETGLYVPRGSIQDNSIETTLTRTFDKVLDRMKDL 404
Query: 141 NIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIF 200
+D E+ +RA+ LF + D S L V + I+ +
Sbjct: 405 QVDMTEWGCLRAVILF---------------NPDTNS------LGAVNQVEEIRERYLLT 443
Query: 201 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKN 259
L Y ++P++ RF ++ L LPR+KS+ VLE L + +I N++I I + N
Sbjct: 444 LIDYCKLIFPNENNRFSRLLLCLPRIKSLAIEVLEILKYSKLI-MNSSIDSFICDILAN 501
>gi|71040954|gb|AAZ20368.1| RXRa nuclear hormone receptor [Gecarcinus lateralis]
Length = 436
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 68/166 (40%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G ++ + H + F VL+E K
Sbjct: 267 VLLKAGWNELLIASFSHRSMGVEDGIVLATGLVIHRSSAHQAGVGAIFDRVLSELVAKMK 326
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ ID E +R+I LF D + + +D LR+ + A
Sbjct: 327 EMKIDKTELGCLRSIVLFN-------PDAKGLNCCND-----VEILREKVYAA------- 367
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L +Y T YP +P RF K+ L LP L+SI LE LF +IG
Sbjct: 368 --LEEYTRTTYPDEPGRFAKLLLRLPALRSIGLKCLEYLFLFKLIG 411
>gi|33386531|emb|CAD45002.1| retinoid X receptor beta [Takifugu rubripes]
Length = 370
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 22/124 (17%)
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
++N+ + + +D E +RAI LF D + S S + +
Sbjct: 261 LVNKMRDMQMDKTELGCLRAIVLFNP-------DAKGLSKSSE--------------VEL 299
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
++ L Y YP Q RF K+ L LP L+SI LE LFF +IG +T I
Sbjct: 300 LREKVYASLEAYCKQRYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTF 358
Query: 253 IWHM 256
+ M
Sbjct: 359 LMEM 362
>gi|47225542|emb|CAG12025.1| unnamed protein product [Tetraodon nigroviridis]
Length = 370
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 22/124 (17%)
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
++N+ + + +D E +RAI LF D + S S + +
Sbjct: 261 LVNKMRDMQMDKTELGCLRAIVLFNP-------DAKGLSKSSE--------------VEL 299
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
++ L Y YP Q RF K+ L LP L+SI LE LFF +IG +T I
Sbjct: 300 LREKVYASLEAYCKQRYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTF 358
Query: 253 IWHM 256
+ M
Sbjct: 359 LMEM 362
>gi|71040956|gb|AAZ20369.1| RXRb nuclear hormone receptor [Gecarcinus lateralis]
Length = 431
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 68/166 (40%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G ++ + H + F VL+E K
Sbjct: 262 VLLKAGWNELLIASFSHRSMGVEDGIVLATGLVIHRSSAHQAGVGAIFDRVLSELVAKMK 321
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ ID E +R+I LF D + + +D LR+ + A
Sbjct: 322 EMKIDKTELGCLRSIVLFN-------PDAKGLNCCND-----VEILREKVYAA------- 362
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L +Y T YP +P RF K+ L LP L+SI LE LF +IG
Sbjct: 363 --LEEYTRTTYPDEPGRFAKLLLRLPALRSIGLKCLEYLFLFKLIG 406
>gi|358251516|gb|AEU04707.1| retinoid X receptor alpha [Lateolabrax japonicus]
Length = 440
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 62/161 (38%), Gaps = 28/161 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 300 ILLRAGWNELLIASFSHRSIAIKDGILLATGLHVHRNNAHSAGVGAIFDRVLTELVSKMR 359
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N S + SE + A++
Sbjct: 360 DMQMDKTELGCLRAIVLF----------NPDSKGLSNPSE-----------VEALREKVY 398
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFF 239
L Y YP QP RF K+ L LP L+SI LE LFF
Sbjct: 399 ASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
>gi|146186444|gb|ABQ09274.1| orphan nuclear receptor Dax-1 [Oryzias latipes]
Length = 222
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 75/197 (38%), Gaps = 51/197 (25%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRH------------------------- 120
LL+ W L +LGLAQ D E VE +
Sbjct: 49 LLIRSGWASLLVLGLAQDRVDFDTTETVEPSMLQRILTGLPHRQSEPQPGHSRTAAGVSV 108
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
VDIE ++ L + ++I EY Y++ LF ++
Sbjct: 109 VDIEA----IKAFLKKCWSVDISTKEYAYLKGAVLFNPDLQG------------------ 146
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
LR I +++ LN+++ V TRF K+ + L L++I V+ +LFFR
Sbjct: 147 ---LRCQHYIQSLRREAHEALNEHVRLVQREDTTRFAKLLIALSMLRTISPPVVAQLFFR 203
Query: 241 NIIGHNTTIKKTIWHMY 257
+IG I++ + M+
Sbjct: 204 PVIG-TVNIEEVLMEMF 219
>gi|402590411|gb|EJW84341.1| hypothetical protein WUBG_04747 [Wuchereria bancrofti]
Length = 537
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 32/168 (19%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC---KSRHVDIEEEVI------RFQSVLNEF 137
LL SW ELF++ AQ+ + + L+ + S + ++ V+ FQ +
Sbjct: 361 LLRASWAELFVVNAAQFGMPVHVAPLLAASGLHSSPPLPTDQLVVFMDRIRVFQGQIERL 420
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGH 196
K L +D E+ ++A+ LF + C L DVI + IQ
Sbjct: 421 KALQMDLAEFCSLKAVILFSI----------------------DCCGLNDVIRVETIQEK 458
Query: 197 TQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
Q L +Y T Q RF ++ L LP L+SI + V+E+LFF ++G
Sbjct: 459 VQSALEEYCRTQKQLQIGRFGRLLLRLPSLRSISASVIEQLFFVKLVG 506
>gi|301608183|ref|XP_002933661.1| PREDICTED: nuclear receptor subfamily 0 group B member 1-like
[Xenopus (Silurana) tropicalis]
Length = 278
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 23/106 (21%)
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPE-SCLRDVIAIAAIQGHTQ 198
L+I EY Y++ I LF +PE L + I +Q Q
Sbjct: 179 LDISTKEYAYLKGIVLF----------------------NPELPGLHCIQYIQGLQHEAQ 216
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
LN+++ ++ + TRF K+ ++L L+++ + + ELFFR IIG
Sbjct: 217 QALNEHVKMIHRWEQTRFTKLIIVLSFLRTVNANAIAELFFRPIIG 262
>gi|449082859|dbj|BAM83566.1| ultraspiracle, partial [Periplaneta americana]
Length = 414
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 69/167 (41%), Gaps = 27/167 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
LLL W EL I + + G ++ + + H + + F VL E +
Sbjct: 260 LLLRAGWNELLIAAFSHRSVEVKDGIVLATGLTVHRNSAHQAGVGTIFDRVLTELVAKMR 319
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +R++ LF + +K S LR+ + A
Sbjct: 320 EMKMDKTELVCLRSVILFNPDVVRGLK-----------SRQEVELLREKVYAA------- 361
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
L +Y T +P +P RF K+ LP L+SI LE LFF ++IG+
Sbjct: 362 --LEEYTRTTHPDEPGRFAKLLPSLPSLRSISLKCLEYLFFFSLIGN 406
>gi|68342537|gb|AAC32789.3| retinoid X receptor homolog [Uca pugilator]
Length = 465
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 66/166 (39%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G ++ + H + F VL+E K
Sbjct: 296 VLLKAGWNELLIASFSHRSMGVEDGIVLATGLVIHRSSAHQAGVGAIFDRVLSELVAKMK 355
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ ID E +R+I LF D N C+ DV ++
Sbjct: 356 EMKIDKTELGCLRSIVLFN---PDAKGLN---------------CVNDV---EILREKVY 394
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L +Y T YP +P RF K+ L LP L+SI LE LF +IG
Sbjct: 395 AALEEYTRTTYPDEPGRFAKLLLRLPALRSIGLKCLEYLFLFKLIG 440
>gi|345489439|ref|XP_003426139.1| PREDICTED: retinoic acid receptor RXR [Nasonia vitripennis]
Length = 400
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 71/165 (43%), Gaps = 28/165 (16%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FKV 139
LL W EL I + ++ G ++ + + H + ++ F+ VL E K
Sbjct: 239 LLRAGWNELQIAAFSHRSIDIEDGIILMTGFTLHKNSAQQAGVGAIFERVLTELVHKMKS 298
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQI 199
+ +D E +RAI LF EV+ ++ D LR+ + +A
Sbjct: 299 MKMDKTELGCLRAIILFNP----EVRGLKAHQEVD--------MLREKVYVA-------- 338
Query: 200 FLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L++Y P +P RF K+ L LP L+SI E LFF ++G
Sbjct: 339 -LDEYTRLHRPDEPGRFAKLLLRLPALRSIGLKCTEHLFFFRLLG 382
>gi|339248543|ref|XP_003373259.1| COUP transcription factor 1 [Trichinella spiralis]
gi|316970658|gb|EFV54551.1| COUP transcription factor 1 [Trichinella spiralis]
Length = 490
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 398 LLRMAWSELFVLNAAQAGMPLHVAPLLAAAGLQTSLMAAERVVLFMDHIRIFQDQIEKLK 457
Query: 139 VLNIDPYEYDYIRAITLFKTVI 160
+L +D EY I+AI LF TV+
Sbjct: 458 MLQVDSAEYSCIKAIVLFTTVV 479
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 398 LLRMAWSELFVLNAAQAGMPLHVAPLLAAAGLQTSLMAAERVVLFMDHIRIFQDQIEKLK 457
Query: 55 VLNIDPYEYDYIRAITLFKT 74
+L +D EY I+AI LF T
Sbjct: 458 MLQVDSAEYSCIKAIVLFTT 477
>gi|410905545|ref|XP_003966252.1| PREDICTED: retinoic acid receptor RXR-beta-A-like [Takifugu
rubripes]
Length = 404
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 22/124 (17%)
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
++N+ + + +D E +RAI LF D + S S + +
Sbjct: 295 LVNKMRDMQMDKTELGCLRAIVLFNP-------DAKGLSKSSE--------------VEL 333
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
++ L Y YP Q RF K+ L LP L+SI LE LFF +IG +T I
Sbjct: 334 LREKVYASLEAYCKQRYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTF 392
Query: 253 IWHM 256
+ M
Sbjct: 393 LMEM 396
>gi|148230344|ref|NP_001080936.1| retinoid X receptor, beta [Xenopus laevis]
gi|840922|emb|CAA60792.1| retinoid X receptor beta [Xenopus laevis]
Length = 412
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 68/178 (38%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + S+ G L+ + H + F VL E +
Sbjct: 249 ILLRAGWNELLIASFSHRSISVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 308
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF D + S+ D + ++
Sbjct: 309 DMRMDKTELGCLRAIILFNP-------DAKGLSNPGD--------------VEVLREKVY 347
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP Q RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 348 ASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 404
>gi|146186460|gb|ABQ09282.1| retinoid X receptor beta 1 [Oryzias latipes]
Length = 194
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 64/166 (38%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNEF----K 138
+LL W EL I + S+ G L+ + H + F VL E +
Sbjct: 41 ILLRAGWNELLIASFSHRSISVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 100
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF D + S+S + + ++
Sbjct: 101 DMQMDKTELGCLRAIILFNP-------DAKGLSNSSE--------------VELLRERVY 139
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 140 ASLETYCKHKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 185
>gi|156556067|emb|CAO79103.1| PNR-like [Aedes aegypti]
gi|403182930|gb|EAT40209.2| AAEL008043-PA [Aedes aegypti]
Length = 422
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRH--VDIEEEVIRFQSVLNEFKVLNID 59
+LL ESW ELF++ AQ+ +D GE C S + R + + +F + +D
Sbjct: 274 VLLEESWAELFVITAAQWGLPIDNGEFCSCCLSSPDFITRNPSARRLHAAIQQFTLARVD 333
Query: 60 PYEYDYIRAITLFKT 74
E ++A+ LF++
Sbjct: 334 YREAACLKALILFRS 348
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRH--VDIEEEVIRFQSVLNEFKVLNID 143
+LL ESW ELF++ AQ+ +D GE C S + R + + +F + +D
Sbjct: 274 VLLEESWAELFVITAAQWGLPIDNGEFCSCCLSSPDFITRNPSARRLHAAIQQFTLARVD 333
Query: 144 PYEYDYIRAITLFKT 158
E ++A+ LF++
Sbjct: 334 YREAACLKALILFRS 348
>gi|160707939|ref|NP_001104259.1| orphan nuclear receptor Dax-1 [Oryzias latipes]
gi|154758877|dbj|BAF74811.1| orphan nuclear receptor Dax1 [Oryzias latipes]
Length = 287
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 75/197 (38%), Gaps = 51/197 (25%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRH------------------------- 120
LL+ W L +LGLAQ D E VE +
Sbjct: 114 LLIRSGWASLLVLGLAQDRVDFDTTETVEPSMLQRILTGLPHRQSEPQPGHSRTAAGVSV 173
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
VDIE ++ L + ++I EY Y++ LF ++
Sbjct: 174 VDIEA----IKAFLKKCWGVDISTKEYAYLKGAVLFNPDLQG------------------ 211
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
LR I +++ LN+++ V TRF K+ + L L++I V+ +LFFR
Sbjct: 212 ---LRCQHYIQSLRREAHEALNEHVRLVQREDTTRFAKLLIALSMLRTISPPVVAQLFFR 268
Query: 241 NIIGHNTTIKKTIWHMY 257
+IG I++ + M+
Sbjct: 269 PVIG-TVNIEEVLMEMF 284
>gi|189442705|gb|AAI67577.1| rxrb protein [Xenopus (Silurana) tropicalis]
Length = 412
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 68/178 (38%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + S+ G L+ + H + F VL E +
Sbjct: 249 ILLRAGWNELLIASFSHRSISVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 308
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF D + S+ D + ++
Sbjct: 309 DMRMDKTELGCLRAIILFNP-------DAKGLSNPGD--------------VEVLREKVY 347
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP Q RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 348 ASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 404
>gi|383858852|ref|XP_003704913.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Megachile rotundata]
Length = 392
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVES--CKSRHVDIEEEVIRFQSVLNEFKVLNID 59
+LL ESW ELF+L AQ+ ++ LV + R + +EV R + +L + +L +D
Sbjct: 242 ILLEESWSELFVLTAAQWNFPVEETTLVPNDLLSERKEVLVDEVRRLRELLGKCALLRVD 301
Query: 60 PYEYDYIRAITLFK 73
EY ++AI LFK
Sbjct: 302 HSEYACLKAIVLFK 315
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVES--CKSRHVDIEEEVIRFQSVLNEFKVLNID 143
+LL ESW ELF+L AQ+ ++ LV + R + +EV R + +L + +L +D
Sbjct: 242 ILLEESWSELFVLTAAQWNFPVEETTLVPNDLLSERKEVLVDEVRRLRELLGKCALLRVD 301
Query: 144 PYEYDYIRAITLFK 157
EY ++AI LFK
Sbjct: 302 HSEYACLKAIVLFK 315
>gi|383931061|gb|AFH56927.1| Dax-1, partial [Monopterus albus]
Length = 190
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 72/182 (39%), Gaps = 46/182 (25%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVE---------SCKSRHVD-------------- 122
+L+ W L +LGLAQ + E VE R D
Sbjct: 22 MLIRSGWAPLLVLGLAQDRVDFETTETVEPSMLQRILTGLPDRQSDGPAGQSRVAAGVSV 81
Query: 123 IEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES 182
+E E I+ + L + ++I EY Y++ LF +E
Sbjct: 82 VEIEAIK--AFLKKCWSIDISTKEYAYLKGAVLFNPDLEG-------------------- 119
Query: 183 CLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNI 242
LR + I +++ LN+++ ++ TRF K+ + L L++I V+ +LFFR +
Sbjct: 120 -LRCLHYIQSLRREAHQALNEHVRLIHREDTTRFAKLLIALSMLRAISPPVVAQLFFRPV 178
Query: 243 IG 244
IG
Sbjct: 179 IG 180
>gi|47940249|gb|AAH72132.1| Rxrb protein [Xenopus laevis]
Length = 449
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 68/178 (38%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + S+ G L+ + H + F VL E +
Sbjct: 286 ILLRAGWNELLIASFSHRSISVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 345
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF D + S+ D + ++
Sbjct: 346 DMRMDKTELGCLRAIILFNP-------DAKGLSNPGD--------------VEVLREKVY 384
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP Q RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 385 ASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 441
>gi|301617695|ref|XP_002938282.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 [Xenopus
(Silurana) tropicalis]
Length = 509
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 178 EHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEEL 237
+HP L I Q Q+ L Y+ YP R +I + LP L+ + S + EEL
Sbjct: 417 DHPG--LSSTAQIEKFQEKAQMELQDYVQKTYPDDTYRLARILVRLPALRLMSSNITEEL 474
Query: 238 FFRNIIGHNTTIKKTIWHMYK 258
FF +IG N I I ++ K
Sbjct: 475 FFTGLIG-NVPIDSIIPYILK 494
>gi|156551053|ref|XP_001605819.1| PREDICTED: retinoic acid receptor RXR isoform 1 [Nasonia
vitripennis]
Length = 414
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 71/165 (43%), Gaps = 28/165 (16%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FKV 139
LL W EL I + ++ G ++ + + H + ++ F+ VL E K
Sbjct: 253 LLRAGWNELQIAAFSHRSIDIEDGIILMTGFTLHKNSAQQAGVGAIFERVLTELVHKMKS 312
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQI 199
+ +D E +RAI LF EV+ ++ D LR+ + +A
Sbjct: 313 MKMDKTELGCLRAIILFNP----EVRGLKAHQEVD--------MLREKVYVA-------- 352
Query: 200 FLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L++Y P +P RF K+ L LP L+SI E LFF ++G
Sbjct: 353 -LDEYTRLHRPDEPGRFAKLLLRLPALRSIGLKCTEHLFFFRLLG 396
>gi|449082861|dbj|BAM83567.1| ultraspiracle long isoform [Periplaneta americana]
Length = 441
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 69/167 (41%), Gaps = 27/167 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
LLL W EL I + + G ++ + + H + + F VL E +
Sbjct: 275 LLLRAGWNELLIAAFSHRSVEVKDGIVLATGLTVHRNSAHQAGVGTIFDRVLTELVAKMR 334
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +R++ LF + +K S LR+ + A
Sbjct: 335 EMKMDKTELVCLRSVILFNPDVVRGLK-----------SRQEVELLREKVYAA------- 376
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
L +Y T +P +P RF K+ LP L+SI LE LFF ++IG+
Sbjct: 377 --LEEYTRTTHPDEPGRFAKLLPSLPSLRSISLKCLEYLFFFSLIGN 421
>gi|170586218|ref|XP_001897876.1| photoreceptor-specific nuclear receptor [Brugia malayi]
gi|158594271|gb|EDP32855.1| photoreceptor-specific nuclear receptor, putative [Brugia malayi]
Length = 486
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 81/174 (46%), Gaps = 33/174 (18%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIRF-QSVLNEFKVLNIDPY 145
LL E+W +LF+L + Q+ +D L+ + + + R+ + + ID
Sbjct: 343 LLKENWCDLFLLSVFQWSLPMDKCPLLNT-----LQTDPSSFRYLNDLFFRIRSYGIDHG 397
Query: 146 EYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHTQIFLNKY 204
E+ ++AI LF+ PE+ L++++ I +Q Q L K
Sbjct: 398 EFACLKAIVLFR----------------------PETRGLKNLVQIEDLQDQAQQTLAK- 434
Query: 205 IHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 258
HT+ S P RF ++ L+LP L++I + +E +FF G NT+I + I MY
Sbjct: 435 -HTMN-SSPARFGRLLLLLPLLRTISAEKIERMFFMATFG-NTSIDQIICKMYN 485
>gi|190336859|gb|AAI62302.1| Retinoid x receptor, beta b [Danio rerio]
gi|190337908|gb|AAI62301.1| Retinoid x receptor, beta b [Danio rerio]
Length = 422
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 53/131 (40%), Gaps = 26/131 (19%)
Query: 130 FQSVLNE----FKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLR 185
F VL E + + +D E +RAI LF D + +SS +
Sbjct: 309 FDRVLTELVCKMRDMQMDKTELGCLRAIVLFNP-------DAKGLTSSSE---------- 351
Query: 186 DVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
+ ++ L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 352 ----VELLREKVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG- 406
Query: 246 NTTIKKTIWHM 256
NT I + M
Sbjct: 407 NTPIDTFLMEM 417
>gi|18859343|ref|NP_571313.1| retinoic acid receptor RXR-beta-B [Danio rerio]
gi|52783418|sp|Q90417.1|RXRBB_DANRE RecName: Full=Retinoic acid receptor RXR-beta-B; AltName:
Full=Nuclear receptor subfamily 2 group B member 2-B;
AltName: Full=Retinoic acid receptor RXR-delta; AltName:
Full=Retinoid X receptor beta-B; AltName: Full=Retinoid
X receptor delta
gi|1046297|gb|AAC59721.1| retinoid X receptor delta [Danio rerio]
gi|1583306|prf||2120366A retinoid X receptor:ISOTYPE=delta
Length = 422
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 53/131 (40%), Gaps = 26/131 (19%)
Query: 130 FQSVLNE----FKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLR 185
F VL E + + +D E +RAI LF D + +SS +
Sbjct: 309 FDRVLTELVCKMRDMQMDKTELGCLRAIVLFNP-------DAKGLTSSSE---------- 351
Query: 186 DVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
+ ++ L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 352 ----VELLREKVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG- 406
Query: 246 NTTIKKTIWHM 256
NT I + M
Sbjct: 407 NTPIDTFLMEM 417
>gi|156357575|ref|XP_001624292.1| predicted protein [Nematostella vectensis]
gi|156211059|gb|EDO32192.1| predicted protein [Nematostella vectensis]
Length = 347
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 190 IAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG--HNT 247
I +Q L ++I+ +P +P RF I L LP L+SI + LE LF N+ G H +
Sbjct: 276 IEQLQDKVHSALQEHINLAFPREPNRFGNILLRLPELRSIGTKSLERLFMLNLTGQIHPS 335
Query: 248 TIKKTIWHMYK 258
T + H K
Sbjct: 336 TSLSDLLHTGK 346
>gi|410130138|dbj|BAM63276.2| retinoid X receptor [Periplaneta americana]
Length = 416
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 69/167 (41%), Gaps = 27/167 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
LLL W EL I + + G ++ + + H + + F VL E +
Sbjct: 250 LLLRAGWNELLIAAFSHRSVEVKDGIVLATGLTVHRNSAHQAGVGTIFDRVLTELVAKMR 309
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +R++ LF + +K S LR+ + A
Sbjct: 310 EMKMDKTELVCLRSVILFNPDVVRGLK-----------SRQEVELLREKVYAA------- 351
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
L +Y T +P +P RF K+ LP L+SI LE LFF ++IG+
Sbjct: 352 --LEEYTRTTHPDEPGRFAKLLPSLPSLRSISLKCLEYLFFFSLIGN 396
>gi|350424111|ref|XP_003493692.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Bombus impatiens]
Length = 392
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVES--CKSRHVDIEEEVIRFQSVLNEFKVLNID 59
+LL ESW ELF+L AQ+ ++ LV + R + +EV + + +L + +L +D
Sbjct: 242 ILLEESWSELFVLTAAQWNFPVEESTLVPNDLSSERKETLVDEVRKLRELLAKCALLRVD 301
Query: 60 PYEYDYIRAITLFK 73
EY ++AI LFK
Sbjct: 302 HSEYACLKAIVLFK 315
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVES--CKSRHVDIEEEVIRFQSVLNEFKVLNID 143
+LL ESW ELF+L AQ+ ++ LV + R + +EV + + +L + +L +D
Sbjct: 242 ILLEESWSELFVLTAAQWNFPVEESTLVPNDLSSERKETLVDEVRKLRELLAKCALLRVD 301
Query: 144 PYEYDYIRAITLFK 157
EY ++AI LFK
Sbjct: 302 HSEYACLKAIVLFK 315
>gi|410896630|ref|XP_003961802.1| PREDICTED: nuclear receptor subfamily 0 group B member 1-like
[Takifugu rubripes]
Length = 306
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 77/196 (39%), Gaps = 51/196 (26%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVE-------------------SCKSRH------V 121
L+ W L +LGLAQ + E VE C SR +
Sbjct: 134 LIRSGWAPLLVLGLAQDRVDFETTETVEPSMLQRILTGSPEGRNQALGCHSRTAAGVSVL 193
Query: 122 DIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPE 181
DIE ++ L + ++I EY Y++ LF +E
Sbjct: 194 DIEA----IKAFLKKCWSVDISTKEYAYLKGAVLFNPDVEG------------------- 230
Query: 182 SCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRN 241
LR + I +++ LN+++ ++ TRF K+ + L L++I V+ +LF +
Sbjct: 231 --LRCLHYIQSLRREAHQALNEHVRLIHREDTTRFAKLLIALSMLRAIRPPVVAQLFLKP 288
Query: 242 IIGHNTTIKKTIWHMY 257
+IG I++ + M+
Sbjct: 289 VIG-TVNIEEVLMEMF 303
>gi|417410382|gb|JAA51665.1| Putative retinoic acid receptor rxr-beta, partial [Desmodus
rotundus]
Length = 398
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 22/124 (17%)
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
++++ + + +D E +RAI LF D + SS + + A
Sbjct: 289 LVSKMRDMRMDKTELGCLRAIILFNP-------DAKGLSSPSE--------------VEA 327
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
++ L Y YP Q RF K+ L LP L+SI LE LFF +IG +T I
Sbjct: 328 LRERVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTF 386
Query: 253 IWHM 256
+ M
Sbjct: 387 LMEM 390
>gi|157117591|ref|XP_001658841.1| nuclear receptor [Aedes aegypti]
Length = 299
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRH--VDIEEEVIRFQSVLNEFKVLNID 59
+LL ESW ELF++ AQ+ +D GE C S + R + + +F + +D
Sbjct: 151 VLLEESWAELFVITAAQWGLPIDNGEFCSCCLSSPDFITRNPSARRLHAAIQQFTLARVD 210
Query: 60 PYEYDYIRAITLFKT 74
E ++A+ LF++
Sbjct: 211 YREAACLKALILFRS 225
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRH--VDIEEEVIRFQSVLNEFKVLNID 143
+LL ESW ELF++ AQ+ +D GE C S + R + + +F + +D
Sbjct: 151 VLLEESWAELFVITAAQWGLPIDNGEFCSCCLSSPDFITRNPSARRLHAAIQQFTLARVD 210
Query: 144 PYEYDYIRAITLFKT 158
E ++A+ LF++
Sbjct: 211 YREAACLKALILFRS 225
>gi|313230320|emb|CBY08024.1| unnamed protein product [Oikopleura dioica]
Length = 420
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 32/67 (47%)
Query: 184 LRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNII 243
L+D I + ++ L Y YP QP RF K+ L LP L+SI LE +F +
Sbjct: 348 LQDPILVEDLREKVYATLEAYSKQKYPEQPGRFAKLLLRLPALRSIGLKCLESMFLFKTV 407
Query: 244 GHNTTIK 250
G I+
Sbjct: 408 GDTPQIE 414
>gi|31376304|dbj|BAC77243.1| retinoid X receptor [Oreochromis niloticus]
Length = 267
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 66/172 (38%), Gaps = 31/172 (18%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + S+ G L+ + H + F VL E +
Sbjct: 108 ILLRAGWNELLIASFSHRSISVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 167
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N + + SE + ++
Sbjct: 168 DMQMDKTELGCLRAIILF----------NPDAKGLSNPSE-----------VELLRERVY 206
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG---HNT 247
L Y YP Q RF K+ L LP L+SI LE LFF +IG H+T
Sbjct: 207 ASLEAYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTRHDT 258
>gi|62860048|ref|NP_001015937.1| retinoid X receptor, beta [Xenopus (Silurana) tropicalis]
gi|89268107|emb|CAJ83850.1| Retinoic acid receptor RXR-beta (Retinoid X receptor beta) [Xenopus
(Silurana) tropicalis]
Length = 449
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 68/178 (38%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + S+ G L+ + H + F VL E +
Sbjct: 286 ILLRAGWNELLIASFSHRSISVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 345
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF D + S+ D + ++
Sbjct: 346 DMRMDKTELGCLRAIILFNP-------DAKGLSNPGD--------------VEVLREKVY 384
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP Q RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 385 ASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 441
>gi|417410882|gb|JAA51906.1| Putative retinoic acid receptor rxr-beta, partial [Desmodus
rotundus]
Length = 459
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 22/124 (17%)
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
++++ + + +D E +RAI LF D + SS + + A
Sbjct: 350 LVSKMRDMRMDKTELGCLRAIILFNP-------DAKGLSSPSE--------------VEA 388
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
++ L Y YP Q RF K+ L LP L+SI LE LFF +IG +T I
Sbjct: 389 LRERVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTF 447
Query: 253 IWHM 256
+ M
Sbjct: 448 LMEM 451
>gi|122892614|gb|ABM67369.1| NR2E3 [Hylobates klossii]
Length = 140
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 12/82 (14%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRH----------VDIEEEVIRFQSVLN 51
+LL E+W ELF+LG Q+ LD L+ ++ +E V+R ++
Sbjct: 60 ILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAQGRLTLASMETRVLR--ETIS 117
Query: 52 EFKVLNIDPYEYDYIRAITLFK 73
F+ L +DP E+ ++A+ LFK
Sbjct: 118 RFRALAVDPTEFACMKALVLFK 139
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 12/82 (14%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRH----------VDIEEEVIRFQSVLN 135
+LL E+W ELF+LG Q+ LD L+ ++ +E V+R ++
Sbjct: 60 ILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAQGRLTLASMETRVLR--ETIS 117
Query: 136 EFKVLNIDPYEYDYIRAITLFK 157
F+ L +DP E+ ++A+ LFK
Sbjct: 118 RFRALAVDPTEFACMKALVLFK 139
>gi|148230541|ref|NP_001087654.1| nuclear receptor subfamily 2 group C member 1-B [Xenopus laevis]
gi|82198455|sp|Q66J63.1|N2C1B_XENLA RecName: Full=Nuclear receptor subfamily 2 group C member 1-B;
AltName: Full=Developmental orphan receptor 2-B;
Short=DOR2-B; Short=xDOR2-B; AltName: Full=Orphan
nuclear receptor TR2-B; AltName: Full=Testicular
receptor 2-B
gi|51703645|gb|AAH81046.1| MGC81787 protein [Xenopus laevis]
Length = 637
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 71/173 (41%), Gaps = 35/173 (20%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELV-------------ESCKSRHVD-IEEEVIRFQS 132
L+ W ELF LGLAQ +++ ++ + S V + + + + Q
Sbjct: 459 LVKACWNELFSLGLAQCCQVMNVETILAAFVNHLHNSMQHDKLSSDKVKLVMDHIFKLQE 518
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
N +D YEY Y++AI LF +HP L +V I
Sbjct: 519 FCNSMVKRCVDGYEYAYLKAIALF-------------------SPDHPG--LENVSHIEK 557
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
+Q + Y+ YP R ++ L LP L+ + + + EELFF +IG+
Sbjct: 558 LQEKAYMEFQDYVTKTYPEDTYRLSRLLLRLPALRLLNAAITEELFFAGLIGN 610
>gi|71051362|gb|AAH99003.1| Rxrb-A-prov protein, partial [Xenopus laevis]
Length = 458
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 68/178 (38%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + S+ G L+ + H + F VL E +
Sbjct: 295 ILLRAGWNELLIASFSHRSISVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 354
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF D + S+ D + ++
Sbjct: 355 DMRMDKTELGCLRAIILFNP-------DAKGLSNPGD--------------VEVLREKVY 393
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP Q RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 394 ASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 450
>gi|380027402|ref|XP_003697414.1| PREDICTED: COUP transcription factor 2-like [Apis florea]
Length = 393
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVES--CKSRHVDIEEEVIRFQSVLNEFKVLNID 59
+LL ESW ELF+L AQ+ ++ LV + R + +E + + +L + +L +D
Sbjct: 243 ILLEESWSELFVLTAAQWNFPVEEATLVPNDLSSERKETLVDEARKLRELLGKCALLRVD 302
Query: 60 PYEYDYIRAITLFK 73
EY ++AI LFK
Sbjct: 303 HSEYACLKAIVLFK 316
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVES--CKSRHVDIEEEVIRFQSVLNEFKVLNID 143
+LL ESW ELF+L AQ+ ++ LV + R + +E + + +L + +L +D
Sbjct: 243 ILLEESWSELFVLTAAQWNFPVEEATLVPNDLSSERKETLVDEARKLRELLGKCALLRVD 302
Query: 144 PYEYDYIRAITLFK 157
EY ++AI LFK
Sbjct: 303 HSEYACLKAIVLFK 316
>gi|322794241|gb|EFZ17417.1| hypothetical protein SINV_08914 [Solenopsis invicta]
Length = 547
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ SW +LF LGLAQ +L L ++ S + + E + R Q
Sbjct: 376 LVRSSWGQLFTLGLAQCAYTLSLPSILTSIINHLQASIAQEKITAGKVKCVTEHICRLQD 435
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
++ L +D EY Y++A+TLF
Sbjct: 436 CVSSLHKLQVDSVEYAYLKALTLF 459
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 14/84 (16%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 132
L+ SW +LF LGLAQ +L L ++ S + + E + R Q
Sbjct: 376 LVRSSWGQLFTLGLAQCAYTLSLPSILTSIINHLQASIAQEKITAGKVKCVTEHICRLQD 435
Query: 133 VLNEFKVLNIDPYEYDYIRAITLF 156
++ L +D EY Y++A+TLF
Sbjct: 436 CVSSLHKLQVDSVEYAYLKALTLF 459
>gi|83318203|gb|AAI08461.1| Rxrb-a protein [Xenopus laevis]
Length = 458
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 68/178 (38%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + S+ G L+ + H + F VL E +
Sbjct: 295 ILLRAGWNELLIASFSHRSISVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 354
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF D + S+ D + ++
Sbjct: 355 DMRMDKTELGCLRAIILFNP-------DAKGLSNPGD--------------VEVLREKVY 393
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP Q RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 394 ASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 450
>gi|432908440|ref|XP_004077862.1| PREDICTED: retinoic acid receptor RXR-beta-A [Oryzias latipes]
Length = 443
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 73/192 (38%), Gaps = 45/192 (23%)
Query: 86 LLLAESWRELFILGLA-QYLPSLDLGELV-------------------ESCKSRHVD-IE 124
+LL W EL I + + +P D G L ES +S V I
Sbjct: 268 ILLRAGWNELLIASFSHRSIPLKDGGSLASELQRDGSHAAGVGAIFDRESVQSAEVGAIF 327
Query: 125 EEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCL 184
+ V+ ++N+ + + +D E +RAI LF + L
Sbjct: 328 DRVL--TELVNKMRDMQMDKTELGCLRAIVLFNPDAKG---------------------L 364
Query: 185 RDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
+ + ++ L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 365 SNTSEVELLREKVYASLEAYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 424
Query: 245 HNTTIKKTIWHM 256
+T I + M
Sbjct: 425 -DTPIDTFLMEM 435
>gi|215539467|gb|AAI69986.1| Rxrb-a protein [Xenopus laevis]
Length = 445
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 68/178 (38%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + S+ G L+ + H + F VL E +
Sbjct: 282 ILLRAGWNELLIASFSHRSISVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 341
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF D + S+ D + ++
Sbjct: 342 DMRMDKTELGCLRAIILFNP-------DAKGLSNPGD--------------VEVLREKVY 380
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP Q RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 381 ASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 437
>gi|156392347|ref|XP_001636010.1| predicted protein [Nematostella vectensis]
gi|156223109|gb|EDO43947.1| predicted protein [Nematostella vectensis]
Length = 351
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 73/168 (43%), Gaps = 30/168 (17%)
Query: 87 LLAESWRELFILGLAQY---LPSLDLGELVES----CKSRHVDIEEEVIRFQSVLNEFKV 139
+L W E+ I+ AQY + + L VE C + + ++ + FQ + +++
Sbjct: 177 VLRSRWCEMLIVSAAQYEVHIDGIPLAYEVEMNPGFCNEKQIQLKRSLRNFQESV--WRL 234
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQI 199
++ EY ++ I LF S D SE P V ++Q
Sbjct: 235 RGLEEAEYACLKTIILF----------------SPDASEGP-----FVQEFESLQELVLS 273
Query: 200 FLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNT 247
L+++ +P +P+R+ K+ L L LKS+ + +E L F + H++
Sbjct: 274 ALDRFCRARFPEEPSRYGKVLLKLMSLKSVIAEDIETLVFSKLFPHSS 321
>gi|395518780|ref|XP_003763535.1| PREDICTED: nuclear receptor subfamily 0 group B member 1-like
[Sarcophilus harrisii]
Length = 305
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 21/119 (17%)
Query: 126 EVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLR 185
+V + L + L+I EY Y++ LF + L
Sbjct: 192 QVQAIKGFLTKCWSLDISTKEYAYLKGTVLFNPDLPG---------------------LH 230
Query: 186 DVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
V I +Q Q LN++I ++ RF K+ + L L+SI + V+ ELFFR IIG
Sbjct: 231 CVQYIQGLQREAQQALNEHIRMLHRGHQARFAKLNVALSLLRSINANVIAELFFRPIIG 289
>gi|148234156|ref|NP_001081830.1| retinoid X receptor, beta [Xenopus laevis]
gi|685085|gb|AAC60748.1| xRXR beta [Xenopus laevis]
Length = 452
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 68/178 (38%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + S G L+ + H + F+ VL E +
Sbjct: 289 ILLRAGWNELLIASFSHRSISEKDGILLATGLHVHRNSAHSAGVGAIFERVLTELVSKMR 348
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF D + S+ D + ++
Sbjct: 349 DMRMDKTELGCLRAIILFNP-------DAKGLSNPGD--------------VEVLREKVY 387
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP Q RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 388 ACLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 444
>gi|426395480|ref|XP_004063999.1| PREDICTED: nuclear receptor subfamily 0 group B member 1 [Gorilla
gorilla gorilla]
Length = 470
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 64/159 (40%), Gaps = 25/159 (15%)
Query: 87 LLAESWRELFILGLAQYLPSLDL-GELVESCKSRHVDIEEEVIRFQSVLNEFKVLNIDPY 145
+L WRE G + LP L L ++R V +V + L++ LNI
Sbjct: 320 ILTTRWRET---GGNEPLPVPTLQPHLAPPAEARKVPSASQVQAIKCFLSKCWSLNISTK 376
Query: 146 EYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYI 205
EY Y++ LF + L+ V I +Q TQ L+++
Sbjct: 377 EYAYLKGTVLFNPDVPG---------------------LQCVKYIQGLQWGTQQILSEHA 415
Query: 206 HTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
+ RF ++ L L+ I + V+ ELFFR IIG
Sbjct: 416 RMTHQGPHDRFIELNSTLFLLRFINANVIAELFFRPIIG 454
>gi|198459166|ref|XP_002138651.1| GA25604, partial [Drosophila pseudoobscura pseudoobscura]
gi|198136600|gb|EDY69209.1| GA25604, partial [Drosophila pseudoobscura pseudoobscura]
Length = 275
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 89/212 (41%), Gaps = 66/212 (31%)
Query: 86 LLLAESWRELFILGLAQYLPSLD-----LGELVESCKSRHVD-------IEEEV------ 127
+LL ESW ELF+L Q+ LD L + E C + + +EEV
Sbjct: 92 ILLEESWSELFLLNAIQWCIPLDPTGCALFSVAEHCNNLENNANGDTCTTKEEVSLSTIG 151
Query: 128 IRFQSVLNE-------------------FKVLNIDPYEYDYIRAITLFKTVIEDEVKDNR 168
+R V N+ +K + +DP E+ ++AI LF+
Sbjct: 152 LRVLVVRNDIVVGQLAADVRTLHEIFCKYKAVLVDPAEFACLKAIVLFR----------- 200
Query: 169 SSSSSDDGSEHPES-CLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLK 227
PE+ L+D I +Q + T + +Q RF ++ L+LP L+
Sbjct: 201 -----------PETRGLKDPAQIENLQDQAH-----HTKTQFTAQIARFGRLLLMLPLLR 244
Query: 228 SIPSLVLEELFFRNIIGHNTTIKKTIWHMYKN 259
I S +E ++F+ IG NT ++K + MYKN
Sbjct: 245 MISSHKIESIYFQRTIG-NTPMEKVLCDMYKN 275
>gi|16580817|dbj|BAB71759.1| retinoid X receptor gamma [Paralichthys olivaceus]
Length = 293
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 63/166 (37%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + S+ G L+ + H + F VL E +
Sbjct: 143 ILLRAGWNELLIASFSHRSISVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 202
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N + + SE + ++
Sbjct: 203 DMQMDKSELGCLRAIILF----------NPDAKGLSNPSE-----------VELLRERVY 241
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 242 ASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 287
>gi|124001868|gb|ABM87882.1| NR2E1 [Papio hamadryas]
Length = 84
Score = 41.2 bits (95), Expect = 0.39, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 14/85 (16%)
Query: 123 IEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES 182
I E+ Q V+ F+ L +D E+ ++ I FK V + RS
Sbjct: 14 IISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRS------------- 60
Query: 183 CLRDVIAIAAIQGHTQIFLNKYIHT 207
R+ AIAA+Q Q+ LN YIHT
Sbjct: 61 -FRNAAAIAALQDEAQLTLNSYIHT 84
>gi|49114890|gb|AAH73179.1| Rxrb-A-prov protein, partial [Xenopus laevis]
Length = 451
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 68/178 (38%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + S+ G L+ + H + F VL E +
Sbjct: 288 ILLRAGWNELLIASFSHRSISVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 347
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF D + S+ D + ++
Sbjct: 348 DMRMDKTELGCLRAIILFNP-------DAKGLSNPGD--------------VEVLREKVY 386
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP Q RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 387 ASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 443
>gi|224042660|ref|XP_002191977.1| PREDICTED: nuclear receptor subfamily 0 group B member 1
[Taeniopygia guttata]
Length = 265
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 21/105 (20%)
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQI 199
L+I EY Y++ LF + L+ I +Q Q
Sbjct: 166 LDISTKEYAYLKGTVLFNPDLPG---------------------LQCTQYIEGLQREAQQ 204
Query: 200 FLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
LN+++ ++ RF K+ ++L L+SI + V+ ELFFR IIG
Sbjct: 205 ALNEHVRLIHRGDEARFAKLNVVLSLLRSINANVVAELFFRPIIG 249
>gi|358251510|gb|AEU04704.1| retinoid X receptor beta [Lateolabrax japonicus]
Length = 444
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 53/124 (42%), Gaps = 22/124 (17%)
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
++N+ + + +D E +RAI LF D + S++ + +
Sbjct: 335 LVNKMRDMQMDKTELGCLRAIALFNP-------DAKGLSNTSE--------------VEL 373
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
++ L Y YP Q RF K+ L LP L+SI LE LFF +IG +T I
Sbjct: 374 LREKVYASLEAYCKQRYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTF 432
Query: 253 IWHM 256
+ M
Sbjct: 433 LMEM 436
>gi|327176811|gb|AEA29832.1| retinoid X receptor splice variant [Homarus americanus]
Length = 410
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 68/166 (40%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G ++ + H + F VL+E K
Sbjct: 243 VLLKAGWNELLIASFSHRSMGVEDGIVLATGLVVHRSSAHQAGVGTIFDRVLSELVAKMK 302
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +R+I L+ D + + +D LR+ + A
Sbjct: 303 EMKMDKTELGCLRSIVLYN-------PDAKGLTCCND-----VEILREKVYAA------- 343
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L +Y T YP +P RF K+ L LP L+SI LE LF +IG
Sbjct: 344 --LEEYTRTSYPEEPGRFAKLLLRLPALRSIGLKCLEYLFLFKLIG 387
>gi|75057170|sp|Q9BG94.1|NR0B1_CALJA RecName: Full=Nuclear receptor subfamily 0 group B member 1;
AltName: Full=Nuclear receptor DAX-1
gi|12698698|gb|AAK01646.1| DAX1 [Callithrix jacchus]
Length = 470
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 21/133 (15%)
Query: 112 LVESCKSRHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSS 171
L ++R V +V + L++ LNI EY Y++ LF +
Sbjct: 343 LAPPAEARKVPSASQVQAIKCFLSKCWSLNISTKEYAYLKGTVLFNPDVPG--------- 393
Query: 172 SSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPS 231
L+ V I +Q TQ L+++I + RF ++ L L+ I +
Sbjct: 394 ------------LQCVKYIQGLQWGTQQILSEHIRMTHRGHHDRFIELNSALFLLRFINA 441
Query: 232 LVLEELFFRNIIG 244
V+ ELFFR IIG
Sbjct: 442 NVIAELFFRPIIG 454
>gi|57965690|ref|XP_561285.1| Anopheles gambiae str. PEST AGAP012921-PA [Anopheles gambiae str.
PEST]
gi|55247184|gb|EAL42340.1| AGAP012921-PA [Anopheles gambiae str. PEST]
Length = 96
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
+Q Q L++++ YP QPTRF ++ L+LP L++I S +E LFF+ IG I +
Sbjct: 2 LQDQAQCVLSEHVRVRYPRQPTRFGRLLLLLPLLRTIRSTTIETLFFKETIG-TVPISRL 60
Query: 253 IWHMYK 258
+ MY+
Sbjct: 61 LIDMYQ 66
>gi|184161289|gb|ACC68676.1| nuclear receptor subfamily 0 group B member 1 [Apalone mutica]
Length = 89
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 184 LRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNII 243
L+ V I Q Q LN+++ ++ RF K+ ++L L+SI + V+ ELFFR II
Sbjct: 18 LQCVQYIQGPQREAQQALNEHVRLIHQGDQARFAKLNVVLSLLRSINANVITELFFRPII 77
Query: 244 G 244
G
Sbjct: 78 G 78
>gi|126325545|ref|XP_001362242.1| PREDICTED: nuclear receptor subfamily 0 group B member 1-like
[Monodelphis domestica]
Length = 293
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 21/119 (17%)
Query: 126 EVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLR 185
+V + L + L+I EY Y++ LF + L
Sbjct: 180 QVQAIKGFLTKCWSLDISTKEYAYLKGTVLFNPDLPG---------------------LH 218
Query: 186 DVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
V I +Q Q LN++I ++ RF K+ + L L+SI + V+ ELFFR IIG
Sbjct: 219 CVQYIQGLQREAQQALNEHIRMLHRGHQARFAKLNVALSLLRSIHANVIAELFFRPIIG 277
>gi|156380693|ref|XP_001631902.1| predicted protein [Nematostella vectensis]
gi|156218950|gb|EDO39839.1| predicted protein [Nematostella vectensis]
Length = 378
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 87/218 (39%), Gaps = 47/218 (21%)
Query: 64 DYIRAITLFKTAFTSRRELAGHLLLAESWRELFILGLAQY---LPSLDLGELVE---SCK 117
D+ R I AF S L LL SW +F LG+ Q P L LV+ +C
Sbjct: 186 DWARGIP----AFLSLPSLDQITLLEASWSGIFCLGVVQCTEIFPLDVLSRLVKKKFACA 241
Query: 118 ----SRH----------VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDE 163
++H + + + + +++++ + +++D E+ Y++ + LF
Sbjct: 242 DDDDAKHDGRGVAFVSKLSLGQRLTAMRNLISSMRRMSVDATEFAYLKGLLLF------- 294
Query: 164 VKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLIL 223
P+ ++ I +Q L Y+ P + TRF + L L
Sbjct: 295 ---------------DPDKATVNIKQITDLQETISESLQVYLSKRQPPETTRFASLLLRL 339
Query: 224 PRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNAG 261
P + + VLEE+FF + +N+ I I +AG
Sbjct: 340 PAARMLTHEVLEEVFFPPVF-NNSKILLLIAGAVGDAG 376
>gi|307189123|gb|EFN73579.1| Photoreceptor-specific nuclear receptor [Camponotus floridanus]
Length = 380
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 10/92 (10%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIE------EEVIRFQSVLNEFKV 139
+LL ESW ELF+L AQ+ +D LV + V IE ++ R + +L +
Sbjct: 230 ILLEESWSELFVLTAAQWSFPVDESTLVPT----DVPIERREVLLDKARRLRELLAKCVA 285
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSS 171
L +D EY ++AI LFK + + R S+
Sbjct: 286 LRVDHSEYACLKAIVLFKAESRNLCEPGRVSA 317
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 10/79 (12%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIE------EEVIRFQSVLNEFKV 55
+LL ESW ELF+L AQ+ +D LV + V IE ++ R + +L +
Sbjct: 230 ILLEESWSELFVLTAAQWSFPVDESTLVPT----DVPIERREVLLDKARRLRELLAKCVA 285
Query: 56 LNIDPYEYDYIRAITLFKT 74
L +D EY ++AI LFK
Sbjct: 286 LRVDHSEYACLKAIVLFKA 304
>gi|223049445|gb|ACM80361.1| orphan nuclear receptor Dax1 [Oncorhynchus mykiss]
Length = 303
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 71/187 (37%), Gaps = 49/187 (26%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVE------------SCKSRHVDIEEEVIRFQSV 133
LL+ W L +LG AQ ++ E E +S D + E + QS
Sbjct: 123 LLVRNCWAPLLVLGFAQDRVDFEITETAEPSMLQRILTGGSGSQSGLTDRQGEPLLEQST 182
Query: 134 ----------------LNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGS 177
L + L+I EY YI+ LF + +
Sbjct: 183 ETSGVSLADIRASKRSLKKCWALDISTKEYAYIKGAVLFNSDLPG--------------- 227
Query: 178 EHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEEL 237
LR + I +++ LN+++ ++ TRF K+ + L L++I V+ +L
Sbjct: 228 ------LRYLHYIQSLRREAHQALNEHVQLIHRDDTTRFAKLLITLSMLRAISPAVVAQL 281
Query: 238 FFRNIIG 244
FF+ +IG
Sbjct: 282 FFKPVIG 288
>gi|348533850|ref|XP_003454417.1| PREDICTED: retinoic acid receptor RXR-beta-A-like isoform 2
[Oreochromis niloticus]
Length = 426
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 53/124 (42%), Gaps = 22/124 (17%)
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
++N+ + + +D E +RAI LF D + S++ + +
Sbjct: 317 LVNKMRDMQMDKIELGCLRAIVLFNP-------DAKGLSNTGE--------------VEL 355
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
++ L Y YP Q RF K+ L LP L+SI LE LFF +IG +T I
Sbjct: 356 LREKVYASLEAYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTF 414
Query: 253 IWHM 256
+ M
Sbjct: 415 LMEM 418
>gi|112820307|gb|ABI24015.1| Rxr2 [Oikopleura dioica]
Length = 300
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%)
Query: 184 LRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNII 243
L+D I + ++ L Y YP QP RF K+ L LP L+SI LE +F +
Sbjct: 240 LQDPILVEDLREKVYASLEAYSKQKYPEQPGRFAKLLLRLPALRSIGLKCLESMFLFKTV 299
Query: 244 G 244
G
Sbjct: 300 G 300
>gi|328787581|ref|XP_624042.2| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Apis
mellifera]
Length = 394
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVES--CKSRHVDIEEEVIRFQSVLNEFKVLNID 59
+LL ESW ELF+L AQ+ ++ LV + R + +E + + +L + +L +D
Sbjct: 244 ILLEESWSELFVLTAAQWNFPVEEAALVPNDLSSERKETLVDEARKLRELLAKCALLRVD 303
Query: 60 PYEYDYIRAITLFK 73
EY ++AI LFK
Sbjct: 304 HSEYACLKAIVLFK 317
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVES--CKSRHVDIEEEVIRFQSVLNEFKVLNID 143
+LL ESW ELF+L AQ+ ++ LV + R + +E + + +L + +L +D
Sbjct: 244 ILLEESWSELFVLTAAQWNFPVEEAALVPNDLSSERKETLVDEARKLRELLAKCALLRVD 303
Query: 144 PYEYDYIRAITLFK 157
EY ++AI LFK
Sbjct: 304 HSEYACLKAIVLFK 317
>gi|348533852|ref|XP_003454418.1| PREDICTED: retinoic acid receptor RXR-beta-A-like isoform 3
[Oreochromis niloticus]
Length = 434
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 53/124 (42%), Gaps = 22/124 (17%)
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
++N+ + + +D E +RAI LF D + S++ + +
Sbjct: 325 LVNKMRDMQMDKIELGCLRAIVLFNP-------DAKGLSNTGE--------------VEL 363
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
++ L Y YP Q RF K+ L LP L+SI LE LFF +IG +T I
Sbjct: 364 LREKVYASLEAYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTF 422
Query: 253 IWHM 256
+ M
Sbjct: 423 LMEM 426
>gi|18652797|gb|AAL76089.1| nuclear receptor DAX1 [Lepidochelys olivacea]
Length = 87
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%)
Query: 190 IAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
I +Q Q LN+ + ++ RF K+ ++L L+SI + V+ ELFFR IIG
Sbjct: 26 IQGLQREAQQALNERVRLLHRGDQARFAKLNVVLSLLRSINANVIAELFFRPIIG 80
>gi|297269916|ref|XP_001118265.2| PREDICTED: retinoic acid receptor RXR-alpha, partial [Macaca
mulatta]
Length = 277
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 184 LRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNII 243
L + + A++ L Y YP QP RF K+ L LP L+SI LE LFF +I
Sbjct: 198 LSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLI 257
Query: 244 GHNTTIKKTIWHM 256
G +T I + M
Sbjct: 258 G-DTPIDTFLMEM 269
>gi|47226885|emb|CAG05777.1| unnamed protein product [Tetraodon nigroviridis]
Length = 207
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 73/183 (39%), Gaps = 50/183 (27%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVE-------------------SCKSRH------V 121
L+ W L +LGLAQ + E VE C SR +
Sbjct: 39 LIRSGWAPLLVLGLAQDRVDFETTETVEPSMLQRILTGAPEGQSQALGCHSRTAAGVSVL 98
Query: 122 DIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPE 181
DIE ++ L + ++I EY Y++ LF + DG
Sbjct: 99 DIEA----IKAFLKKCWSVDISTKEYAYLKGAVLFNPDV--------------DG----- 135
Query: 182 SCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRN 241
LR + I +++ + LN+++ ++ TRF K+ + L L+SI V+ +LF +
Sbjct: 136 --LRCLHYIQSLRREARQALNEHVRLLHREDTTRFAKLLIALSMLRSIRPAVVAQLFLKP 193
Query: 242 IIG 244
+IG
Sbjct: 194 VIG 196
>gi|312174936|emb|CBH51396.1| DAX-2 nuclear receptor subfamily 0, group B, member 1b
[Dicentrarchus labrax]
Length = 265
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 79/192 (41%), Gaps = 45/192 (23%)
Query: 87 LLAESWRELFILGLAQ----------YLPSLDLGELVESCKSRHVDIEEEVIRFQSV--- 133
L+ SW L +LG+ Q PSL L ++ K R + I+ V
Sbjct: 91 LVRNSWAPLLVLGMVQDSVNFDTVETQQPSL-LHMILTHSKERQQERTPAEIQGPGVPVS 149
Query: 134 ----LNEFKV----LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLR 185
+ F+V L I EY +++ LF V E E ++
Sbjct: 150 DAEGIKMFQVWCRGLRISVKEYAFLKGAILFTPVTELECREY------------------ 191
Query: 186 DVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
+ A+Q + L +++ TV+ + RF +++ +L L+SI + LFFR + G
Sbjct: 192 ----VQALQREAERALYEHVRTVHRGKAGRFGRLRAVLSALRSIEPDAVAGLFFRPVTGS 247
Query: 246 NTTIKKTIWHMY 257
N +I++ + M+
Sbjct: 248 N-SIEEHVLAMF 258
>gi|391334318|ref|XP_003741552.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Metaseiulus
occidentalis]
Length = 574
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 65/161 (40%), Gaps = 30/161 (18%)
Query: 87 LLAESWRELFILGLAQYLPS------LDLGELVESCKSRHVDIEEEVIR-FQSVLNEFKV 139
L+ + W EL I G + + L G +V+ + + R ++ + +
Sbjct: 414 LIKQGWNELLIAGFSHRSINVKDGIVLATGLVVQRDSAHQAGVGAIFDRVLAELVTKMRD 473
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHTQ 198
+ +D E +RAI L+ +PE+ LR V + +
Sbjct: 474 IKMDKTELGCLRAIVLY----------------------NPEARGLRSVAEVEQFREGVY 511
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFF 239
I L +Y YP Q +RF K+ L LP L+SI +E LFF
Sbjct: 512 IALEEYTRMSYPDQNSRFPKLLLRLPALRSIGLKCVENLFF 552
>gi|345494486|ref|XP_003427303.1| PREDICTED: orphan steroid hormone receptor 2 isoform 2 [Nasonia
vitripennis]
gi|345494490|ref|XP_003427304.1| PREDICTED: orphan steroid hormone receptor 2 isoform 3 [Nasonia
vitripennis]
Length = 626
Score = 40.8 bits (94), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 24/109 (22%)
Query: 7 SWRELFILGLAQYLPSLDLGELV--------------ESCKSRHVDIEEEVIRFQSVLNE 52
SW +LF LGLAQ +L L ++ + ++ + E + R Q ++
Sbjct: 457 SWGQLFTLGLAQCAYTLSLPSILTWIINHLQASIAQEKMTANKIKSVTEHICRLQDCVSS 516
Query: 53 FKVLNIDPYEYDYIRAITLFKTAFTSRRELAG------HLLLAESWREL 95
L +D EY Y++A+TL F++ LAG +L +W EL
Sbjct: 517 LHKLQVDSVEYAYLKALTL----FSADNVLAGVWRKRVQILQEAAWTEL 561
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 14/82 (17%)
Query: 91 SWRELFILGLAQYLPSLDLGELV--------------ESCKSRHVDIEEEVIRFQSVLNE 136
SW +LF LGLAQ +L L ++ + ++ + E + R Q ++
Sbjct: 457 SWGQLFTLGLAQCAYTLSLPSILTWIINHLQASIAQEKMTANKIKSVTEHICRLQDCVSS 516
Query: 137 FKVLNIDPYEYDYIRAITLFKT 158
L +D EY Y++A+TLF
Sbjct: 517 LHKLQVDSVEYAYLKALTLFSA 538
>gi|14994052|gb|AAK76400.1| retinoid X receptor beta [Scophthalmus maximus]
Length = 277
Score = 40.8 bits (94), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 201 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 232 LESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 275
>gi|12698696|gb|AAK01645.1| DAX1 [Hylobates sp. TIB-201]
Length = 470
Score = 40.8 bits (94), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 21/133 (15%)
Query: 112 LVESCKSRHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSS 171
L ++R V +V + L++ LNI EY Y++ LF +
Sbjct: 343 LAPPAEARKVPSASQVQAIKCFLSKCWSLNISTKEYAYLKGTVLFNPDVPG--------- 393
Query: 172 SSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPS 231
L+ V I +Q TQ L++++ + RF ++ L L+ I +
Sbjct: 394 ------------LQCVKYIQGLQWGTQQILSEHVRMTHQGPHDRFIELNSTLFLLRFINA 441
Query: 232 LVLEELFFRNIIG 244
V+ ELFFR IIG
Sbjct: 442 NVIAELFFRPIIG 454
>gi|24210302|emb|CAD54660.1| retinoid x receptor, beta [Danio rerio]
Length = 129
Score = 40.8 bits (94), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 52/131 (39%), Gaps = 26/131 (19%)
Query: 130 FQSVLNEF----KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLR 185
F VL E + + +D E +RAI LF D + SS +
Sbjct: 13 FDRVLTELVSKMRDMQMDKTELGCLRAIILFNP-------DAKGLSSPSE---------- 55
Query: 186 DVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
+ ++ L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 56 ----VELLREKVYASLEAYCKQRYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG- 110
Query: 246 NTTIKKTIWHM 256
+T I + M
Sbjct: 111 DTPIDTFLMEM 121
>gi|332224148|ref|XP_003261226.1| PREDICTED: nuclear receptor subfamily 0 group B member 1 [Nomascus
leucogenys]
Length = 470
Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 21/133 (15%)
Query: 112 LVESCKSRHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSS 171
L ++R V +V + L++ LNI EY Y++ LF +
Sbjct: 343 LAPPAEARKVPSASQVQAIKCFLSKCWSLNISTKEYAYLKGTVLFNPDVPG--------- 393
Query: 172 SSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPS 231
L+ V I +Q TQ L++++ + RF ++ L L+ I +
Sbjct: 394 ------------LQCVKYIQGLQWGTQQILSEHVRMTHRGPHDRFIELNSTLFLLRFINA 441
Query: 232 LVLEELFFRNIIG 244
V+ ELFFR IIG
Sbjct: 442 NVIAELFFRPIIG 454
>gi|224473826|gb|ACN49167.1| retinoid X receptor beta [Oryzias dancena]
Length = 111
Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 53/124 (42%), Gaps = 22/124 (17%)
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
++++ + + +D E +RAI LF D + S+S + +
Sbjct: 2 LVSKMRDMQMDKTELGCLRAIILFNP-------DAKGLSNSSE--------------VEL 40
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
++ L Y YP Q RF K+ L LP L+SI LE LFF +IG +T I
Sbjct: 41 LRERVYASLEAYCKHKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTF 99
Query: 253 IWHM 256
+ M
Sbjct: 100 LMEM 103
>gi|307196423|gb|EFN78012.1| Photoreceptor-specific nuclear receptor [Harpegnathos saltator]
Length = 394
Score = 40.4 bits (93), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEEEVIRFQSVLNEFKVLNID 59
+LL ESW ELF+L AQ+ S+D L V+ R + ++ R + +L + L +D
Sbjct: 244 ILLEESWSELFVLTAAQWNFSVDETSLVPVDLPPERREILVDKARRLRELLAKCVALRVD 303
Query: 60 PYEYDYIRAITLFKT 74
EY ++AI LFK
Sbjct: 304 HSEYACLKAIVLFKA 318
Score = 40.4 bits (93), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEEEVIRFQSVLNEFKVLNID 143
+LL ESW ELF+L AQ+ S+D L V+ R + ++ R + +L + L +D
Sbjct: 244 ILLEESWSELFVLTAAQWNFSVDETSLVPVDLPPERREILVDKARRLRELLAKCVALRVD 303
Query: 144 PYEYDYIRAITLFKT 158
EY ++AI LFK
Sbjct: 304 HSEYACLKAIVLFKA 318
>gi|345494488|ref|XP_001604432.2| PREDICTED: orphan steroid hormone receptor 2 isoform 1 [Nasonia
vitripennis]
Length = 659
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 24/109 (22%)
Query: 7 SWRELFILGLAQYLPSLDLGELV--------------ESCKSRHVDIEEEVIRFQSVLNE 52
SW +LF LGLAQ +L L ++ + ++ + E + R Q ++
Sbjct: 490 SWGQLFTLGLAQCAYTLSLPSILTWIINHLQASIAQEKMTANKIKSVTEHICRLQDCVSS 549
Query: 53 FKVLNIDPYEYDYIRAITLFKTAFTSRRELAG------HLLLAESWREL 95
L +D EY Y++A+TL F++ LAG +L +W EL
Sbjct: 550 LHKLQVDSVEYAYLKALTL----FSADNVLAGVWRKRVQILQEAAWTEL 594
Score = 40.0 bits (92), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 14/80 (17%)
Query: 91 SWRELFILGLAQYLPSLDLGELV--------------ESCKSRHVDIEEEVIRFQSVLNE 136
SW +LF LGLAQ +L L ++ + ++ + E + R Q ++
Sbjct: 490 SWGQLFTLGLAQCAYTLSLPSILTWIINHLQASIAQEKMTANKIKSVTEHICRLQDCVSS 549
Query: 137 FKVLNIDPYEYDYIRAITLF 156
L +D EY Y++A+TLF
Sbjct: 550 LHKLQVDSVEYAYLKALTLF 569
>gi|198285543|gb|ACH85310.1| retinoid x receptor beta a [Salmo salar]
Length = 373
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 201 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP Q RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 311 LEAYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 365
>gi|349804913|gb|AEQ17929.1| putative nuclear receptor subfamily 2 group f number 1
[Hymenochirus curtipes]
Length = 168
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 31/135 (22%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES--------CKSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 56 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHAAPMSADRVVAFMDHIRIFQEQVEKLK 115
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L DV + ++Q +
Sbjct: 116 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDVAHVESLQEKS 153
Query: 198 QIFLNKYIHTVYPSQ 212
Q L +Y+ + YP+Q
Sbjct: 154 QCALEEYVRSQYPNQ 168
>gi|410926021|ref|XP_003976477.1| PREDICTED: retinoic acid receptor RXR-beta-A-like isoform 1
[Takifugu rubripes]
Length = 417
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 68/178 (38%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + S+ G L+ + H + F VL E +
Sbjct: 254 ILLRAGWNELLIASFSHRSISVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 313
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N + + SE + ++
Sbjct: 314 DMQMDKTELGCLRAIILF----------NPDAKGLSNPSE-----------VELLRERVY 352
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP Q RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 353 ASLEAYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 409
>gi|260834495|ref|XP_002612246.1| hypothetical protein BRAFLDRAFT_100080 [Branchiostoma floridae]
gi|229297621|gb|EEN68255.1| hypothetical protein BRAFLDRAFT_100080 [Branchiostoma floridae]
Length = 167
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 9/138 (6%)
Query: 130 FQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDD----GSEHPESCLR 185
Q L++F L +D EY ++ I LFKT ++ ++D+ + + D GS S
Sbjct: 2 LQETLHKFHQLQVDAVEYACLKGIVLFKTDVQ-SLRDHGAVAVLQDQTQRGSSATASRCT 60
Query: 186 DVIAIAAIQGHTQIF----LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRN 241
++ I+A + +I QP RF K+ L+L L+ + LE +FF
Sbjct: 61 NLANISASANYCSFCPAYESGHHIEMHKAGQPFRFGKLLLLLSSLRKVQRSSLESVFFTK 120
Query: 242 IIGHNTTIKKTIWHMYKN 259
+ ++ + + MYK+
Sbjct: 121 AMTGGVSMDQLVLDMYKS 138
>gi|148362145|gb|ABQ59669.1| RXRB [Salmo salar]
Length = 428
Score = 40.4 bits (93), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 22/124 (17%)
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
++++ + + +D E +RAI LF D + SSS + +
Sbjct: 319 LVSKMRDMQMDKTELGCLRAIILFNP-------DAKGLSSSSE--------------VEL 357
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
++ L Y YP Q RF K+ L LP L+SI LE LFF +IG +T I
Sbjct: 358 LREKVYASLESYCKHRYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTF 416
Query: 253 IWHM 256
+ M
Sbjct: 417 LMEM 420
>gi|321463821|gb|EFX74834.1| hypothetical protein DAPPUDRAFT_323993 [Daphnia pulex]
Length = 539
Score = 40.0 bits (92), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 72/173 (41%), Gaps = 37/173 (21%)
Query: 87 LLAESWRELFILGLAQ-----YLPS--------LDLGELVESCKSRHVD-IEEEVIRFQS 132
L+ W ELF LG+AQ LP+ L + ++ V + E V++ Q
Sbjct: 358 LVRGCWSELFALGMAQCSHIMSLPAILTAIITHLQASVAQDKVSAQRVKLVTEHVLQLQD 417
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
+N L +D +EY Y++AI LF +H S R V
Sbjct: 418 YVNTMSKLQVDEHEYAYLKAIALFSP-------------------DHAGSTGRQV---ER 455
Query: 193 IQGHTQIFLNKYIHTVYPSQP-TRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
Q L Y+ + + RF ++ L LP L+S+ ++EELFF +IG
Sbjct: 456 FQDKAVKELRTYVTQTWNEEAEDRFPRLLLRLPPLRSLQPGLMEELFFAALIG 508
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQ-----YLPS--------LDLGELVESCKSRHVD-IEEEVIRFQS 48
L+ W ELF LG+AQ LP+ L + ++ V + E V++ Q
Sbjct: 358 LVRGCWSELFALGMAQCSHIMSLPAILTAIITHLQASVAQDKVSAQRVKLVTEHVLQLQD 417
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
+N L +D +EY Y++AI LF
Sbjct: 418 YVNTMSKLQVDEHEYAYLKAIALF 441
>gi|71040958|gb|AAZ20370.1| RXRc nuclear hormone receptor [Gecarcinus lateralis]
Length = 363
Score = 40.0 bits (92), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 25/44 (56%)
Query: 201 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L +Y T YP +P RF K+ L LP L SI LE LF +IG
Sbjct: 295 LEEYTRTTYPDEPGRFAKLLLRLPALMSIGLKCLEYLFLFKLIG 338
>gi|332025246|gb|EGI65420.1| Nuclear receptor subfamily 2 group E member 1 [Acromyrmex
echinatior]
Length = 393
Score = 40.0 bits (92), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVE---SCKSRHVDIEEEVIRFQSVLNEFKVLNI 142
+LL ESW ELF+L AQ+ +D LV + R V + ++ R + +L + L +
Sbjct: 243 ILLEESWSELFVLTAAQWNFPVDETTLVSMDLPTERREV-LLDKARRLRELLAKCAALRV 301
Query: 143 DPYEYDYIRAITLFKTVIEDEVKDNRSSS 171
D EY ++AI LFK + + R S+
Sbjct: 302 DHSEYACLKAIVLFKAESRNLCEPGRVSA 330
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVE---SCKSRHVDIEEEVIRFQSVLNEFKVLNI 58
+LL ESW ELF+L AQ+ +D LV + R V + ++ R + +L + L +
Sbjct: 243 ILLEESWSELFVLTAAQWNFPVDETTLVSMDLPTERREV-LLDKARRLRELLAKCAALRV 301
Query: 59 DPYEYDYIRAITLFK 73
D EY ++AI LFK
Sbjct: 302 DHSEYACLKAIVLFK 316
>gi|403263620|ref|XP_003924120.1| PREDICTED: nuclear receptor subfamily 0 group B member 1 [Saimiri
boliviensis boliviensis]
Length = 470
Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 21/133 (15%)
Query: 112 LVESCKSRHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSS 171
L ++R V +V + L + L I EY Y++ LF +
Sbjct: 343 LAPPAEARQVPSASQVQAIKCFLTKCWSLEISTKEYAYLKGTVLFNPDLPG--------- 393
Query: 172 SSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPS 231
L+ V I +Q TQ L++++ + Q RF ++ L L+ I +
Sbjct: 394 ------------LQCVKYIQGLQWGTQQILSEHVRMTHRGQHDRFIELNSALFLLRFINA 441
Query: 232 LVLEELFFRNIIG 244
V+ ELFFR IIG
Sbjct: 442 NVIAELFFRPIIG 454
>gi|348557963|ref|XP_003464788.1| PREDICTED: nuclear receptor subfamily 0 group B member 1-like
[Cavia porcellus]
Length = 475
Score = 40.0 bits (92), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 21/114 (18%)
Query: 131 QSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAI 190
+S L + L I EY Y++ LF + L+ V I
Sbjct: 367 KSFLAKCWSLEISTKEYAYLKGTVLFNPDLPG---------------------LQCVKYI 405
Query: 191 AAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
+Q TQ LN++I + TRF ++ L L+ I S V+ ELFFR IIG
Sbjct: 406 QGLQWGTQQILNEHIRMTHREYQTRFAELNSALFLLRFINSNVIAELFFRPIIG 459
>gi|226432209|gb|ACO55650.1| retinoid X receptor beta [Paralichthys olivaceus]
Length = 417
Score = 40.0 bits (92), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 68/178 (38%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + S+ G L+ + H + F VL E +
Sbjct: 254 ILLRAGWNELLIASFSHRSISVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 313
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N + + SE + ++
Sbjct: 314 DMQMDKSELGCLRAIILF----------NPDAKGLSNPSE-----------VELLRERVY 352
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP Q RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 353 ASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 409
>gi|410988304|ref|XP_004000426.1| PREDICTED: nuclear receptor subfamily 0 group B member 1 [Felis
catus]
Length = 471
Score = 40.0 bits (92), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 21/128 (16%)
Query: 117 KSRHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDG 176
++ H+ EV + L + L+I EY Y++ LF +
Sbjct: 349 EAGHLPSAAEVQVIKCFLAKCWSLDISTKEYAYLKGTVLFNPGLPG-------------- 394
Query: 177 SEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEE 236
L+ V I +Q TQ L+ +I + RF ++ L L+ + + VL E
Sbjct: 395 -------LQCVTYIQGLQWGTQQILSDHIRMTHRGHHIRFAQLNSALFLLRYVNANVLAE 447
Query: 237 LFFRNIIG 244
LFFR +IG
Sbjct: 448 LFFRPVIG 455
>gi|307194605|gb|EFN76894.1| Retinoic acid receptor RXR-alpha-A [Harpegnathos saltator]
Length = 389
Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 66/168 (39%), Gaps = 32/168 (19%)
Query: 86 LLLAESWRELFILGLAQYLPSLDL--------GELVESCKSRHVDIEEEVIRFQS-VLNE 136
LLL W EL I + S+D+ G V ++ + R S ++++
Sbjct: 227 LLLRAGWNELLIAAFSHR--SIDVKDGIVLATGTTVNRNSAQQAGVGTIFDRVLSELVSK 284
Query: 137 FKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGH 196
+ + +D E +R+I LF + L+ V + ++
Sbjct: 285 MREMEMDRTELGCLRSIILFNPDVRG---------------------LKSVQEVNLLREK 323
Query: 197 TQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L +Y P+ P RF K+ L LP ++SI LE LFF +IG
Sbjct: 324 IYAALEEYTRMSRPNDPGRFAKLLLRLPSIRSIGLKCLEHLFFFKVIG 371
>gi|348541129|ref|XP_003458039.1| PREDICTED: retinoic acid receptor RXR-beta-A isoform 1 [Oreochromis
niloticus]
Length = 417
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 68/178 (38%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + S+ G L+ + H + F VL E +
Sbjct: 254 ILLRAGWNELLIASFSHRSISVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 313
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N + + SE + ++
Sbjct: 314 DMQMDKTELGCLRAIILF----------NPDAKGLSNPSE-----------VELLRERVY 352
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP Q RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 353 ASLEAYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 409
>gi|122892563|gb|ABM67333.1| NR2E1 [Hylobates klossii]
Length = 51
Score = 40.0 bits (92), Expect = 1.1, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 211 SQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 260
+QP RF K+ L+LP L+SI +EE+FF+ IG N I + + MYK++
Sbjct: 1 TQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIG-NVPITRLLSDMYKSS 49
>gi|296235195|ref|XP_002762806.1| PREDICTED: nuclear receptor subfamily 0 group B member 1-like
[Callithrix jacchus]
Length = 408
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 21/133 (15%)
Query: 112 LVESCKSRHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSS 171
L ++R V +V + L + L I EY Y++ LF +
Sbjct: 281 LAPPAEARQVPSASQVQAIKCFLTKCWSLEISTKEYAYLKGTVLFNPDLPG--------- 331
Query: 172 SSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPS 231
L+ V I +Q TQ L++++ + Q RF ++ L L+ I +
Sbjct: 332 ------------LQCVKYIQGLQWGTQQILSEHVRMTHRGQHDRFIELNSALFLLRFINA 379
Query: 232 LVLEELFFRNIIG 244
V+ ELFFR IIG
Sbjct: 380 NVIAELFFRPIIG 392
>gi|338718022|ref|XP_001493349.2| PREDICTED: retinoic acid receptor RXR-beta-like [Equus caballus]
Length = 347
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 201 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP Q RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 285 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 339
>gi|297709661|ref|XP_002831544.1| PREDICTED: nuclear receptor subfamily 0 group B member 1 [Pongo
abelii]
Length = 470
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 21/133 (15%)
Query: 112 LVESCKSRHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSS 171
L ++R V +V + L++ LNI EY Y++ LF +
Sbjct: 343 LAPPAEARKVPSASQVQAIKCFLSKCWSLNISTKEYAYLKGTVLFNPDVPG--------- 393
Query: 172 SSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPS 231
L+ V I +Q TQ L+++ + RF ++ L L+ I +
Sbjct: 394 ------------LQCVKYIQGLQWGTQQILSEHTRMTHQGPHDRFIELNSTLFLLRFINA 441
Query: 232 LVLEELFFRNIIG 244
V+ ELFFR IIG
Sbjct: 442 NVIAELFFRPIIG 454
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.139 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,045,452,571
Number of Sequences: 23463169
Number of extensions: 159564150
Number of successful extensions: 387817
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 294
Number of HSP's that attempted gapping in prelim test: 384407
Number of HSP's gapped (non-prelim): 2150
length of query: 261
length of database: 8,064,228,071
effective HSP length: 139
effective length of query: 122
effective length of database: 9,097,814,876
effective search space: 1109933414872
effective search space used: 1109933414872
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 75 (33.5 bits)