BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16761
(261 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CJW|A Chain A, Crystal Structure Of The Human Coup-Tfii Ligand Binding
Domain
Length = 244
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 74 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 133
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRXXXXXXXXXEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L DV + ++Q +
Sbjct: 134 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDVAHVESLQEKS 171
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 172 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 229
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 74 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 133
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 134 ALHVDSAEYSCLKAIVLFTS 153
>pdb|3P0U|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Human
Testicular Receptor 4
pdb|3P0U|B Chain B, Crystal Structure Of The Ligand Binding Domain Of Human
Testicular Receptor 4
Length = 249
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 79/198 (39%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 59 AFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRI 118
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRXXXXXXXXXEHP 180
+ E + + Q N L+ID YEY Y++AI LF +HP
Sbjct: 119 KQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSP-------------------DHP 159
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ Y R +I + LP L+ + S + EELFF
Sbjct: 160 G--LTSTSQIEKFQEAAQMELQDYVQATYSEDTYRLARILVRLPALRLMSSNITEELFFT 217
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N +I I ++ K
Sbjct: 218 GLIG-NVSIDSIIPYILK 234
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 14/85 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 71 LVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE 130
Query: 49 VLNEFKVLNIDPYEYDYIRAITLFK 73
N L+ID YEY Y++AI LF
Sbjct: 131 FCNSMAKLDIDGYEYAYLKAIVLFS 155
>pdb|1Z5X|U Chain U, Hemipteran Ecdysone Receptor Ligand-Binding Domain
Complexed With Ponasterone A
Length = 262
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 73/179 (40%), Gaps = 31/179 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I G + S+ G ++ + H + + F VL E +
Sbjct: 100 ILLKSGWNELLIAGFSHRSMSVKDGIMLATGLVVHRNCAHQAGVGAIFDRVLTELVAKMR 159
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRXXXXXXXXXEHPES-CLRDVIAIAAIQGHT 197
+ +D E +R+I LF +PE+ L+ + ++
Sbjct: 160 EMKMDKTELGCLRSIVLF----------------------NPEAKGLKSTQQVENLREKV 197
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L +Y YP Q RF K+ L LP L+SI LE LFF ++G NT+I + M
Sbjct: 198 YAILEEYCRQTYPDQSGRFAKLLLRLPALRSIGLKCLEHLFFFKLVG-NTSIDSFLLSM 255
>pdb|2Q60|A Chain A, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
pdb|2Q60|B Chain B, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
pdb|2Q60|C Chain C, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
pdb|2Q60|D Chain D, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
Length = 258
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 74/180 (41%), Gaps = 33/180 (18%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHV---DIEEEVIR--FQSVLNE---- 136
+LL W EL I + S+D+ + + HV + + F VL E
Sbjct: 94 ILLRAGWNELLIASFSHR--SIDVKDSILLASGLHVHRHSAHQAGVGPIFDRVLTELVSK 151
Query: 137 FKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRXXXXXXXXXEHPESCLRDVIAIAAIQGH 196
+ + +D E +RA+ LF +++ D I +++
Sbjct: 152 MRDMMMDKTELGCLRAVVLFNPDVKNP---------------------SDSAHIESLREK 190
Query: 197 TQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y + YP QP RF K+ L LP L+SI LE LFF +IG +T I K + +M
Sbjct: 191 VYASLEAYCRSKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDKFLMNM 249
>pdb|2NXX|A Chain A, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
pdb|2NXX|B Chain B, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
pdb|2NXX|C Chain C, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
pdb|2NXX|D Chain D, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
Length = 235
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 66/165 (40%), Gaps = 28/165 (16%)
Query: 87 LLAESWRELFILGL------AQYLPSLDLGELVESCKSRHVDIEEEVIRFQS-VLNEFKV 139
LL W EL I AQ L G V + V + R S ++N+ K
Sbjct: 74 LLRAGWNELLIAAFSHRSMQAQDAIVLATGLTVNKSTAHAVGVGNIYDRVLSELVNKMKE 133
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRXXXXXXXXXEHPESCLRDVIAIAAIQGHTQI 199
+ +D E +RAI L+ + ++ V + ++
Sbjct: 134 MKMDKTELGCLRAIILYNPDVRG---------------------IKSVQEVEMLREKIYG 172
Query: 200 FLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L +Y T +P++P RF K+ L LP L+SI LE LFF +IG
Sbjct: 173 VLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 217
>pdb|3EYB|A Chain A, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
pdb|3EYB|B Chain B, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
pdb|3EYB|C Chain C, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
pdb|3EYB|D Chain D, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
Length = 219
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 71/179 (39%), Gaps = 31/179 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + + G L+ S H + F VL E +
Sbjct: 63 ILLRAGWNELLIAAFSHRSIDVKDGILLASGLHVHRSSAHQAGVGTIFDRVLTELVAKMR 122
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRXXXXXXXXXEHPES-CLRDVIAIAAIQGHT 197
+ +D E +RAI LF +P++ L D + +++
Sbjct: 123 DMKMDKTELGCLRAIVLF----------------------NPDAKGLTDPSLVESLREKV 160
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L +Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 161 YASLEEYCKQQYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 218
>pdb|1LBD|A Chain A, Ligand-Binding Domain Of The Human Nuclear Receptor
Rxr-Alpha
Length = 282
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 71/179 (39%), Gaps = 31/179 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 119 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 178
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRXXXXXXXXXEHPES-CLRDVIAIAAIQGHT 197
+ +D E +RAI LF +P+S L + + A++
Sbjct: 179 DMQMDKTELGCLRAIVLF----------------------NPDSKGLSNPAEVEALREKV 216
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 217 YASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 274
>pdb|1RDT|A Chain A, Crystal Structure Of A New Rexinoid Bound To The Rxralpha
Ligand Binding Doamin In The RxralphaPPARGAMMA
HETERODIMER
pdb|3FC6|A Chain A, Hrxralpha & Mlxralpha With An Indole Pharmacophore,
Sb786875
pdb|3FC6|C Chain C, Hrxralpha & Mlxralpha With An Indole Pharmacophore,
Sb786875
pdb|3FAL|A Chain A, Humanrxr Alpha & Mouse Lxr Alpha Complexed With Retenoic
Acid And Gsk2186
pdb|3FAL|C Chain C, Humanrxr Alpha & Mouse Lxr Alpha Complexed With Retenoic
Acid And Gsk2186
Length = 242
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 71/179 (39%), Gaps = 31/179 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 79 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 138
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRXXXXXXXXXEHPES-CLRDVIAIAAIQGHT 197
+ +D E +RAI LF +P+S L + + A++
Sbjct: 139 DMQMDKTELGCLRAIVLF----------------------NPDSKGLSNPAEVEALREKV 176
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 177 YASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 234
>pdb|3UVV|B Chain B, Crystal Structure Of The Ligand Binding Domains Of The
Thyroid Receptor:retinoid X Receptor Complexed With
3,3',5 Triiodo-L- Thyronine And 9-Cis Retinoic Acid
Length = 244
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 71/179 (39%), Gaps = 31/179 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 79 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 138
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRXXXXXXXXXEHPES-CLRDVIAIAAIQGHT 197
+ +D E +RAI LF +P+S L + + A++
Sbjct: 139 DMQMDKTELGCLRAIVLF----------------------NPDSKGLSNPAEVEALREKV 176
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 177 YASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 234
>pdb|1XDK|A Chain A, Crystal Structure Of The RarbetaRXRALPHA LIGAND BINDING
Domain Heterodimer In Complex With 9-Cis Retinoic Acid
And A Fragment Of The Trap220 Coactivator
pdb|1XDK|E Chain E, Crystal Structure Of The RarbetaRXRALPHA LIGAND BINDING
Domain Heterodimer In Complex With 9-Cis Retinoic Acid
And A Fragment Of The Trap220 Coactivator
Length = 238
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 71/179 (39%), Gaps = 31/179 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 75 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 134
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRXXXXXXXXXEHPES-CLRDVIAIAAIQGHT 197
+ +D E +RAI LF +P+S L + + A++
Sbjct: 135 DMQMDKTELGCLRAIVLF----------------------NPDSKGLSNPAEVEALREKV 172
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 173 YASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 230
>pdb|1FM6|A Chain A, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Rosiglitazone And Co-Activator Peptides.
pdb|1FM6|U Chain U, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Rosiglitazone And Co-Activator Peptides.
pdb|1FM9|A Chain A, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Gi262570 And Co-Activator Peptides.
pdb|1G5Y|A Chain A, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
pdb|1G5Y|B Chain B, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
pdb|1G5Y|C Chain C, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
pdb|1G5Y|D Chain D, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
pdb|1G1U|A Chain A, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
pdb|1G1U|B Chain B, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
pdb|1G1U|C Chain C, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
pdb|1G1U|D Chain D, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
pdb|1K74|A Chain A, The 2.3 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Ppargamma And Rxralpha Ligand
Binding Domains Respectively Bound With Gw409544 And
9-Cis Retinoic Acid And Co-Activator Peptides.
pdb|2ACL|A Chain A, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
pdb|2ACL|C Chain C, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
pdb|2ACL|E Chain E, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
pdb|2ACL|G Chain G, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
pdb|3OZJ|A Chain A, Crystal Structure Of Human Retinoic X Receptor Alpha
Complexed With Bigelovin And Coactivator Src-1
pdb|3OZJ|C Chain C, Crystal Structure Of Human Retinoic X Receptor Alpha
Complexed With Bigelovin And Coactivator Src-1
Length = 238
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 71/179 (39%), Gaps = 31/179 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 75 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 134
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRXXXXXXXXXEHPES-CLRDVIAIAAIQGHT 197
+ +D E +RAI LF +P+S L + + A++
Sbjct: 135 DMQMDKTELGCLRAIVLF----------------------NPDSKGLSNPAEVEALREKV 172
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 173 YASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 230
>pdb|1FBY|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To 9-Cis Retinoic Acid
pdb|1FBY|B Chain B, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To 9-Cis Retinoic Acid
Length = 239
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 71/179 (39%), Gaps = 31/179 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 76 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 135
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRXXXXXXXXXEHPES-CLRDVIAIAAIQGHT 197
+ +D E +RAI LF +P+S L + + A++
Sbjct: 136 DMQMDKTELGCLRAIVLF----------------------NPDSKGLSNPAEVEALREKV 173
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 174 YASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 231
>pdb|3E94|A Chain A, Crystal Structure Of Rxralpha Ligand Binding Domain In
Complex With Tributyltin And A Coactivator Fragment
pdb|3KWY|A Chain A, Crystal Structure Of Rxralpha Ligand Binding Domain In
Complex With Triphenyltin And A Coactivator Fragment
Length = 244
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 71/179 (39%), Gaps = 31/179 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 81 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 140
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRXXXXXXXXXEHPES-CLRDVIAIAAIQGHT 197
+ +D E +RAI LF +P+S L + + A++
Sbjct: 141 DMQMDKTELGCLRAIVLF----------------------NPDSKGLSNPAEVEALREKV 178
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 179 YASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 236
>pdb|1MV9|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To The Eicosanoid Dha (Docosa Hexaenoic
Acid) And A Coactivator Peptide
pdb|1MVC|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To The Synthetic Agonist Compound Bms 649
And A Coactivator Peptide
pdb|1MZN|A Chain A, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
pdb|1MZN|C Chain C, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
pdb|1MZN|E Chain E, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
pdb|1MZN|G Chain G, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
pdb|2P1T|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Retinoid X Receptor Alpha In Complex With
3-(2'-Methoxy)- Tetrahydronaphtyl Cinnamic Acid And A
Fragment Of The Coactivator Tif-2
pdb|2P1U|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Retinoid X Receptor Alpha In Complex With 3-(2'-Ethoxy)-
Tetrahydronaphtyl Cinnamic Acid And A Fragment Of The
Coactivator Tif-2
pdb|2P1V|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Retinoid X Receptor Alpha In Complex With
3-(2'-Propoxy)- Tetrahydronaphtyl Cinnamic Acid And A
Fragment Of The Coactivator Tif-2
pdb|3FUG|A Chain A, Crystal Structure Of The Retinoid X Receptor Ligand
Binding Domain Bound To The Synthetic Agonist
3-[4-Hydroxy-3-(3,5,
5,8,8-Pentamethyl-5,6,7,8-Tetrahydronaphthalen-2-Yl)-
Phenyl]acrylic Acid
pdb|2ZXZ|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To A Synthetic Agonist Compound And A
Coactivator Peptide
pdb|2ZY0|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To A Synthetic Agonist Compound And A
Coactivator Peptide
pdb|2ZY0|C Chain C, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To A Synthetic Agonist Compound And A
Coactivator Peptide
pdb|3NSP|A Chain A, Crystal Structure Of Tetrameric Rxralpha-Lbd
pdb|3NSP|B Chain B, Crystal Structure Of Tetrameric Rxralpha-Lbd
pdb|3NSQ|A Chain A, Crystal Structure Of Tetrameric Rxralpha-Lbd Complexed
With Antagonist Danthron
pdb|3NSQ|B Chain B, Crystal Structure Of Tetrameric Rxralpha-Lbd Complexed
With Antagonist Danthron
pdb|3R29|A Chain A, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2
pdb|3R29|B Chain B, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2
pdb|3R2A|A Chain A, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
pdb|3R2A|B Chain B, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
pdb|3R2A|C Chain C, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
pdb|3R2A|D Chain D, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
pdb|3R5M|A Chain A, Crystal Structure Of Rxralphalbd Complexed With The
Agonist Magnolol
pdb|3R5M|C Chain C, Crystal Structure Of Rxralphalbd Complexed With The
Agonist Magnolol
Length = 240
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 71/179 (39%), Gaps = 31/179 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 77 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 136
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRXXXXXXXXXEHPES-CLRDVIAIAAIQGHT 197
+ +D E +RAI LF +P+S L + + A++
Sbjct: 137 DMQMDKTELGCLRAIVLF----------------------NPDSKGLSNPAEVEALREKV 174
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 175 YASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 232
>pdb|1XV9|A Chain A, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid, And 5b-Pregnane-3,20-Dione.
pdb|1XV9|C Chain C, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid, And 5b-Pregnane-3,20-Dione.
pdb|1XVP|A Chain A, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid And Citco
pdb|1XVP|C Chain C, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid And Citco
Length = 236
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 71/179 (39%), Gaps = 31/179 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 73 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 132
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRXXXXXXXXXEHPES-CLRDVIAIAAIQGHT 197
+ +D E +RAI LF +P+S L + + A++
Sbjct: 133 DMQMDKTELGCLRAIVLF----------------------NPDSKGLSNPAEVEALREKV 170
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 171 YASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 228
>pdb|3OAP|A Chain A, Crystal Structure Of Human Retinoid X Receptor
Alpha-Ligand Binding Domain Complex With 9-Cis Retinoic
Acid And The Coactivator Peptide Grip-1
Length = 231
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 71/179 (39%), Gaps = 31/179 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 72 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 131
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRXXXXXXXXXEHPES-CLRDVIAIAAIQGHT 197
+ +D E +RAI LF +P+S L + + A++
Sbjct: 132 DMQMDKTELGCLRAIVLF----------------------NPDSKGLSNPAEVEALREKV 169
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 170 YASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 227
>pdb|1XLS|A Chain A, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
pdb|1XLS|B Chain B, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
pdb|1XLS|C Chain C, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
pdb|1XLS|D Chain D, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
Length = 232
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 71/179 (39%), Gaps = 31/179 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 73 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 132
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRXXXXXXXXXEHPES-CLRDVIAIAAIQGHT 197
+ +D E +RAI LF +P+S L + + A++
Sbjct: 133 DMQMDKTELGCLRAIVLF----------------------NPDSKGLSNPAEVEALREKV 170
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 171 YASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 228
>pdb|3PCU|A Chain A, Crystal Structure Of Human Retinoic X Receptor Alpha
Ligand-Binding Domain Complexed With Lx0278 And Src1
Peptide
Length = 230
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 71/179 (39%), Gaps = 31/179 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 71 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 130
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRXXXXXXXXXEHPES-CLRDVIAIAAIQGHT 197
+ +D E +RAI LF +P+S L + + A++
Sbjct: 131 DMQMDKTELGCLRAIVLF----------------------NPDSKGLSNPAEVEALREKV 168
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 169 YASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 226
>pdb|3H0A|A Chain A, Crystal Structure Of Peroxisome Proliferator-Activated
Receptor Gamma (Pparg) And Retinoic Acid Receptor Alpha
(Rxra) In Complex With 9-Cis Retinoic Acid, Co-Activator
Peptide, And A Partial Agonist
Length = 228
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 71/179 (39%), Gaps = 31/179 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 72 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 131
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRXXXXXXXXXEHPES-CLRDVIAIAAIQGHT 197
+ +D E +RAI LF +P+S L + + A++
Sbjct: 132 DMQMDKTELGCLRAIVLF----------------------NPDSKGLSNPAEVEALREKV 169
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 170 YASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 227
>pdb|3A9E|A Chain A, Crystal Structure Of A Mixed Agonist-Bound Rar-Alpha And
Antagonist- Bound Rxr-Alpha Heterodimer Ligand Binding
Domains
Length = 240
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 71/179 (39%), Gaps = 31/179 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 77 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 136
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRXXXXXXXXXEHPES-CLRDVIAIAAIQGHT 197
+ +D E +RAI LF +P+S L + + A++
Sbjct: 137 DMQMDKTELGCLRAIVLF----------------------NPDSKGLSNPAEVEALREKV 174
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 175 YASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 232
>pdb|1DKF|A Chain A, Crystal Structure Of A Heterodimeric Complex Of Rar And
Rxr Ligand-Binding Domains
Length = 233
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 71/179 (39%), Gaps = 31/179 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 75 ILLRAGWNELLIASASHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 134
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRXXXXXXXXXEHPES-CLRDVIAIAAIQGHT 197
+ +D E +RAI LF +P+S L + + A++
Sbjct: 135 DMQMDKTELGCLRAIVLF----------------------NPDSKGLSNPAEVEALREKV 172
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 173 YASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 230
>pdb|2GL8|A Chain A, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
pdb|2GL8|B Chain B, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
pdb|2GL8|C Chain C, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
pdb|2GL8|D Chain D, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
Length = 241
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 64/167 (38%), Gaps = 30/167 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + S+ G L+ + H F VL E K
Sbjct: 78 ILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMK 137
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRXXXXXXXXXEHPES-CLRDVIAIAAIQGHT 197
+ +D E +RAI LF +P++ L + + ++
Sbjct: 138 DMQMDKSELGCLRAIVLF----------------------NPDAKGLSNPSEVETLREKV 175
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 176 YATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 222
>pdb|1XIU|A Chain A, Crystal Structure Of The Agonist-Bound Ligand-Binding
Domain Of Biomphalaria Glabrata Rxr
pdb|1XIU|B Chain B, Crystal Structure Of The Agonist-Bound Ligand-Binding
Domain Of Biomphalaria Glabrata Rxr
Length = 230
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 70/187 (37%), Gaps = 41/187 (21%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I G + G L+ + H + F VL E +
Sbjct: 67 ILLRAGWNELLIAGFSHRSIMAKDGILLATGLHVHRSSAHQAGVGTIFDRVLTELVAKMR 126
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRXXXXXXXXXEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RA+ LF D + A+Q Q
Sbjct: 127 DMKMDKTELGCLRAVVLFNP---------------------------DAKGLTAVQEVEQ 159
Query: 199 I------FLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
+ L +Y + YP +P RF K+ L LP L+SI LE LFF +IG + I
Sbjct: 160 LREKVYASLEEYTKSRYPEEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DQPIDTF 218
Query: 253 IWHMYKN 259
+ M +N
Sbjct: 219 LMEMLEN 225
>pdb|3DZU|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Bvt.13, 9-Cis Retinoic Acid And Ncoa2
Peptide
pdb|3DZY|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Rosiglitazone, 9-Cis Retinoic Acid And
Ncoa2 Peptide
pdb|3E00|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Gw9662, 9-Cis Retinoic Acid And Ncoa2
Peptide
Length = 467
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 66/167 (39%), Gaps = 30/167 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 304 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 363
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRXXXXXXXXXEHPES-CLRDVIAIAAIQGHT 197
+ +D E +RAI LF +P+S L + + A++
Sbjct: 364 DMQMDKTELGCLRAIVLF----------------------NPDSKGLSNPAEVEALREKV 401
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 402 YASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 448
>pdb|1UHL|A Chain A, Crystal Structure Of The Lxralfa-Rxrbeta Lbd Heterodimer
Length = 236
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 201 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP Q RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 174 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 228
>pdb|1H9U|A Chain A, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
pdb|1H9U|B Chain B, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
pdb|1H9U|C Chain C, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
pdb|1H9U|D Chain D, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
Length = 224
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 201 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 173 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 216
>pdb|3F5C|B Chain B, Structure Of Dax-1:lrh-1 Complex
pdb|3F5C|C Chain C, Structure Of Dax-1:lrh-1 Complex
Length = 268
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 43/105 (40%), Gaps = 21/105 (20%)
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRXXXXXXXXXEHPESCLRDVIAIAAIQGHTQI 199
LNID EY Y++ LF + L+ V I +Q TQ
Sbjct: 169 LNIDTKEYAYLKGTVLFNPDLPG---------------------LQCVKYIEGLQWRTQQ 207
Query: 200 FLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L ++I + R ++ L L+ I S V+ ELFFR IIG
Sbjct: 208 ILTEHIRMMQREYQIRSAELNSALFLLRFINSDVVTELFFRPIIG 252
>pdb|3FS1|A Chain A, Crystal Structure Of Hnf4a Lbd In Complex With The Ligand
And The Coactivator Pgc-1a Fragment
Length = 230
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 37/172 (21%)
Query: 80 RELAG-HLLLAES-----WRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSV 133
R AG HLLL + ++++ +LG Y+ EL E + ++E V+ FQ
Sbjct: 74 RAHAGEHLLLGATKRSMVFKDVLLLG-NDYIVPRHCPELAEMSRVSIRILDELVLPFQE- 131
Query: 134 LNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRXXXXXXXXXEHPES-CLRDVIAIAA 192
L ID EY Y++AI F P++ L D I
Sbjct: 132 ------LQIDDNEYAYLKAIIFF----------------------DPDAKGLSDPGKIKR 163
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
++ Q+ L YI+ RF ++ L+LP L+SI ++E++ F + G
Sbjct: 164 LRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKLFG 215
>pdb|1PZL|A Chain A, Crystal Structure Of Hnf4a Lbd In Complex With The Ligand
And The Coactivator Src-1 Peptide
Length = 237
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 37/172 (21%)
Query: 80 RELAG-HLLLAES-----WRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSV 133
R AG HLLL + ++++ +LG Y+ EL E + ++E V+ FQ
Sbjct: 80 RAHAGEHLLLGATKRSMVFKDVLLLG-NDYIVPRHCPELAEMSRVSIRILDELVLPFQE- 137
Query: 134 LNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRXXXXXXXXXEHPES-CLRDVIAIAA 192
L ID EY Y++AI F P++ L D I
Sbjct: 138 ------LQIDDNEYAYLKAIIFF----------------------DPDAKGLSDPGKIKR 169
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
++ Q+ L YI+ RF ++ L+LP L+SI ++E++ F + G
Sbjct: 170 LRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKLFG 221
>pdb|2AX8|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain W741l Mutant In Complex With S-1
Length = 256
Score = 30.8 bits (68), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 56/128 (43%), Gaps = 19/128 (14%)
Query: 43 VIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTAFTSRRELAGHLLLAESWRELFILG--L 100
V+++ L F+ L++D D + I + L G ++ A WR + +
Sbjct: 52 VVKWAKALPGFRNLHVD----DQMAVI---------QYSLMGLMVFAMGWRSFTNVNSRM 98
Query: 101 AQYLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVI 160
+ P L E KSR + + +R + + EF L I P E+ ++A+ LF +
Sbjct: 99 LYFAPDLVFNEY-RMHKSR---MYSQCVRMRHLSQEFGWLQITPQEFLCMKALLLFSIIP 154
Query: 161 EDEVKDNR 168
D +K+ +
Sbjct: 155 VDGLKNQK 162
>pdb|1Z95|A Chain A, Crystal Structure Of The Androgen Receptor Ligand-Binding
Domain W741l Mutant Complex With R-Bicalutamide
Length = 246
Score = 30.8 bits (68), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 56/128 (43%), Gaps = 19/128 (14%)
Query: 43 VIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTAFTSRRELAGHLLLAESWRELFILG--L 100
V+++ L F+ L++D D + I + L G ++ A WR + +
Sbjct: 44 VVKWAKALPGFRNLHVD----DQMAVI---------QYSLMGLMVFAMGWRSFTNVNSRM 90
Query: 101 AQYLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVI 160
+ P L E KSR + + +R + + EF L I P E+ ++A+ LF +
Sbjct: 91 LYFAPDLVFNE-YRMHKSR---MYSQCVRMRHLSQEFGWLQITPQEFLCMKALLLFSIIP 146
Query: 161 EDEVKDNR 168
D +K+ +
Sbjct: 147 VDGLKNQK 154
>pdb|1PK5|A Chain A, Crystal Structure Of The Orphan Nuclear Receptor Lrh-1
pdb|1PK5|B Chain B, Crystal Structure Of The Orphan Nuclear Receptor Lrh-1
pdb|3F5C|A Chain A, Structure Of Dax-1:lrh-1 Complex
Length = 248
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 30/61 (49%)
Query: 184 LRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNII 243
L ++ + +Q L Y YP Q +F ++ L LP L++I + L+++++
Sbjct: 171 LENLQLVEGVQEQVNAALLDYTVCNYPQQTEKFGQLLLRLPELRAISKQAEDYLYYKHVN 230
Query: 244 G 244
G
Sbjct: 231 G 231
>pdb|1GS4|A Chain A, Structural Basis For The Glucocorticoid Response In A
Mutant Human Androgen Receptor (Arccr) Derived From An
Androgen-Independent Prostate Cancer
Length = 248
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 84 GHLLLAESWRELFILG--LAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLN 141
G ++ A WR + + + P L E KSR + + +R + + EF L
Sbjct: 74 GLMVFAMGWRSFTNVNSRMLYFAPDLVFNEY-RMHKSR---MYSQCVRMRHLSQEFGWLQ 129
Query: 142 IDPYEYDYIRAITLFKTVIEDEVKDNR 168
I P E+ ++A+ LF + D +K+ +
Sbjct: 130 ITPQEFLCMKALLLFSIIPVDGLKNQK 156
>pdb|1I37|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domain Complex With Dihydrotestosterone
pdb|2IHQ|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domian Complex With An N-Aryl-
Hydroxybicyclohydantoin
pdb|2NW4|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domain Complex With Bms-564929
pdb|3G0W|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domain Complex With An N-Aryl-Oxazolidin 2-Imine
Inhibitor
Length = 260
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 84 GHLLLAESWRELFILG--LAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLN 141
G ++ A WR + + + P L E KSR + + +R + + EF L
Sbjct: 84 GLMVFAMGWRSFTNVNSRMLYFAPDLVFNEY-RMHKSR---MYSQCVRMRHLSQEFGWLQ 139
Query: 142 IDPYEYDYIRAITLFKTVIEDEVKDNR 168
I P E+ ++A+ LF + D +K+ +
Sbjct: 140 ITPQEFLCMKALLLFSIIPVDGLKNQK 166
>pdb|2HVC|A Chain A, The Crystal Structure Of Ligand-Binding Domain (Lbd) Of
Human Androgen Receptor In Complex With A Selective
Modulator Lgd2226
Length = 250
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 84 GHLLLAESWRELFILG--LAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLN 141
G ++ A WR + + + P L E KSR + + +R + + EF L
Sbjct: 75 GLMVFAMGWRSFTNVNSRMLYFAPDLVFNEY-RMHKSR---MYSQCVRMRHLSQEFGWLQ 130
Query: 142 IDPYEYDYIRAITLFKTVIEDEVKDNR 168
I P E+ ++A+ LF + D +K+ +
Sbjct: 131 ITPQEFLCMKALLLFSIIPVDGLKNQK 157
>pdb|1I38|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domain T877a Mutant Complex With
Dihydrotestosterone
pdb|1XNN|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domain T877a Mutant Complex With (3a-Alpha-,4-
Alpha
7-Alpha-,7a-Alpha-)-3a,4,7,7a-Tetrahydro-2-(4-Nitro-
1-Naphthalenyl)-4,7-Ethano-1h-Isoindole-1,3(2h)-Dione
Length = 260
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 84 GHLLLAESWRELFILG--LAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLN 141
G ++ A WR + + + P L E KSR + + +R + + EF L
Sbjct: 84 GLMVFAMGWRSFTNVNSRMLYFAPDLVFNEY-RMHKSR---MYSQCVRMRHLSQEFGWLQ 139
Query: 142 IDPYEYDYIRAITLFKTVIEDEVKDNR 168
I P E+ ++A+ LF + D +K+ +
Sbjct: 140 ITPQEFLCMKALLLFSIIPVDGLKNQK 166
>pdb|1XOW|A Chain A, Crystal Structure Of The Human Androgen Receptor Ligand
Binding Domain Bound With An Androgen Receptor Nh2-
Terminal Peptide, Ar20-30, And R1881
pdb|1XQ3|A Chain A, Crystal Structure Of The Human Androgen Receptor Ligand
Binding Domain Bound With R1881
pdb|2AO6|A Chain A, Crystal Structure Of The Human Androgen Receptor Ligand
Binding Domain Bound With Tif2(Iii) 740-753 Peptide And
R1881
pdb|3B5R|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm C-31
pdb|3B65|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm S-24
pdb|3B66|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm S-21
pdb|3B67|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm C-23
pdb|3B68|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm S-4
pdb|2YHD|A Chain A, Human Androgen Receptor In Complex With Af2 Small Molecule
Inhibitor
pdb|3V4A|A Chain A, Structure Of Ar Lbd With Activator Peptide And Sarm
Inhibitor 2
Length = 249
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 84 GHLLLAESWRELFILG--LAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLN 141
G ++ A WR + + + P L E KSR + + +R + + EF L
Sbjct: 73 GLMVFAMGWRSFTNVNSRMLYFAPDLVFNEY-RMHKSR---MYSQCVRMRHLSQEFGWLQ 128
Query: 142 IDPYEYDYIRAITLFKTVIEDEVKDNR 168
I P E+ ++A+ LF + D +K+ +
Sbjct: 129 ITPQEFLCMKALLLFSIIPVDGLKNQK 155
>pdb|2Z4J|A Chain A, Crystal Structure Of Ar Lbd With Shp Peptide Nr Box 2
Length = 248
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 84 GHLLLAESWRELFILG--LAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLN 141
G ++ A WR + + + P L E KSR + + +R + + EF L
Sbjct: 73 GLMVFAMGWRSFTNVNSRMLYFAPDLVFNEY-RMHKSR---MYSQCVRMRHLSQEFGWLQ 128
Query: 142 IDPYEYDYIRAITLFKTVIEDEVKDNR 168
I P E+ ++A+ LF + D +K+ +
Sbjct: 129 ITPQEFLCMKALLLFSIIPVDGLKNQK 155
>pdb|1T5Z|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain (Lbd) With Dht And A Peptide Derived From Its
Physiological Coactivator Ara70
pdb|1T63|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain With Dht And A Peptide Derived From Its
Physiological Coactivator Grip1 Nr Box3
pdb|1T65|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain With Dht And A Peptide Derived Form Its
Physiological Coactivator Grip1 Nr Box 2 Bound In A Non-
Helical Conformation
pdb|2PIO|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIP|L Chain L, Androgen Receptor Lbd With Small Molecule
pdb|2PIQ|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIR|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIT|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIU|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIV|A Chain A, Androgen Receptor With Small Molecule
pdb|2PIW|A Chain A, Androgen Receptor With Small Molecule
pdb|2PIX|A Chain A, Ar Lbd With Small Molecule
pdb|2PKL|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2QPY|A Chain A, Ar Lbd With Small Molecule
Length = 251
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 84 GHLLLAESWRELFILG--LAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLN 141
G ++ A WR + + + P L E KSR + + +R + + EF L
Sbjct: 75 GLMVFAMGWRSFTNVNSRMLYFAPDLVFNEY-RMHKSR---MYSQCVRMRHLSQEFGWLQ 130
Query: 142 IDPYEYDYIRAITLFKTVIEDEVKDNR 168
I P E+ ++A+ LF + D +K+ +
Sbjct: 131 ITPQEFLCMKALLLFSIIPVDGLKNQK 157
>pdb|1XJ7|A Chain A, Complex Androgen Receptor Lbd And Rac3 Peptide
pdb|2Q7I|A Chain A, The Wild Type Androgen Receptor Ligand Binding Domain
Bound With Testosterone And An Ar 20-30 Peptide
pdb|2Q7J|A Chain A, The Wild Type Androgen Receptor Ligand Binding Domain
Bound With Testosterone And A Tif2 Box 3 Coactivator
Peptide 740-753
Length = 257
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 84 GHLLLAESWRELFILG--LAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLN 141
G ++ A WR + + + P L E KSR + + +R + + EF L
Sbjct: 81 GLMVFAMGWRSFTNVNSRMLYFAPDLVFNEY-RMHKSR---MYSQCVRMRHLSQEFGWLQ 136
Query: 142 IDPYEYDYIRAITLFKTVIEDEVKDNR 168
I P E+ ++A+ LF + D +K+ +
Sbjct: 137 ITPQEFLCMKALLLFSIIPVDGLKNQK 163
>pdb|1T73|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Fxxff Motif
pdb|1T74|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Wxxlf Motif
pdb|1T76|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Wxxvw Motif
pdb|1T79|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Fxxlw Motif
pdb|1T7F|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Lxxll Motif
pdb|1T7M|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Fxxyf Motif
pdb|1T7R|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Fxxlf Motif
pdb|1T7T|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With 5-Alpha Dihydrotestosterone
Length = 269
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 84 GHLLLAESWRELFILG--LAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLN 141
G ++ A WR + + + P L E KSR + + +R + + EF L
Sbjct: 93 GLMVFAMGWRSFTNVNSRMLYFAPDLVFNEY-RMHKSR---MYSQCVRMRHLSQEFGWLQ 148
Query: 142 IDPYEYDYIRAITLFKTVIEDEVKDNR 168
I P E+ ++A+ LF + D +K+ +
Sbjct: 149 ITPQEFLCMKALLLFSIIPVDGLKNQK 175
>pdb|1E3G|A Chain A, Human Androgen Receptor Ligand Binding In Complex With The
Ligand Metribolone (R1881)
Length = 263
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 84 GHLLLAESWRELFILG--LAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLN 141
G ++ A WR + + + P L E KSR + + +R + + EF L
Sbjct: 87 GLMVFAMGWRSFTNVNSRMLYFAPDLVFNEY-RMHKSR---MYSQCVRMRHLSQEFGWLQ 142
Query: 142 IDPYEYDYIRAITLFKTVIEDEVKDNR 168
I P E+ ++A+ LF + D +K+ +
Sbjct: 143 ITPQEFLCMKALLLFSIIPVDGLKNQK 169
>pdb|3L3X|A Chain A, Crystal Structure Of Dht-Bound Androgen Receptor In
Complex With The First Motif Of Steroid Receptor
Coactivator 3
pdb|3L3Z|A Chain A, Crystal Structure Of Dht-Bound Androgen Receptor In
Complex With The Third Motif Of Steroid Receptor
Coactivator 3
Length = 250
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 84 GHLLLAESWRELFILG--LAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLN 141
G ++ A WR + + + P L E KSR + + +R + + EF L
Sbjct: 75 GLMVFAMGWRSFTNVNSRMLYFAPDLVFNEY-RMHKSR---MYSQCVRMRHLSQEFGWLQ 130
Query: 142 IDPYEYDYIRAITLFKTVIEDEVKDNR 168
I P E+ ++A+ LF + D +K+ +
Sbjct: 131 ITPQEFLCMKALLLFSIIPVDGLKNQK 157
>pdb|3RLL|A Chain A, Crystal Structure Of The T877a Androgen Receptor Ligand
Binding Domain In Complex With
(S)-N-(4-Cyano-3-(Trifluoromethyl)phenyl)-3-(4-
Cyanonaphthalen-1-Yloxy)-2-Hydroxy-2-Methylpropanamide
Length = 247
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 84 GHLLLAESWRELFILG--LAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLN 141
G ++ A WR + + + P L E KSR + + +R + + EF L
Sbjct: 73 GLMVFAMGWRSFTNVNSRMLYFAPDLVFNEY-RMHKSR---MYSQCVRMRHLSQEFGWLQ 128
Query: 142 IDPYEYDYIRAITLFKTVIEDEVKDNR 168
I P E+ ++A+ LF + D +K+ +
Sbjct: 129 ITPQEFLCMKALLLFSIIPVDGLKNQK 155
>pdb|3RLJ|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm S-22
Length = 247
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 84 GHLLLAESWRELFILG--LAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLN 141
G ++ A WR + + + P L E KSR + + +R + + EF L
Sbjct: 73 GLMVFAMGWRSFTNVNSRMLYFAPDLVFNEY-RMHKSR---MYSQCVRMRHLSQEFGWLQ 128
Query: 142 IDPYEYDYIRAITLFKTVIEDEVKDNR 168
I P E+ ++A+ LF + D +K+ +
Sbjct: 129 ITPQEFLCMKALLLFSIIPVDGLKNQK 155
>pdb|2OZ7|A Chain A, Crystal Structure Of The Human Androgen Receptor T877a
Mutant Ligand- Binding Domain With Cyproterone Acetate
Length = 249
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 84 GHLLLAESWRELFILG--LAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLN 141
G ++ A WR + + + P L E KSR + + +R + + EF L
Sbjct: 73 GLMVFAMGWRSFTNVNSRMLYFAPDLVFNEY-RMHKSR---MYSQCVRMRHLSQEFGWLQ 128
Query: 142 IDPYEYDYIRAITLFKTVIEDEVKDNR 168
I P E+ ++A+ LF + D +K+ +
Sbjct: 129 ITPQEFLCMKALLLFSIIPVDGLKNQK 155
>pdb|2AX9|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With R-3
pdb|2AXA|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With S-1
pdb|2YLO|A Chain A, Targeting The Binding Function 3 Site Of The Androgen
Receptor Through In Silico Molecular Modeling
pdb|2YLP|A Chain A, Targeting The Binding Function 3 Site Of The Androgen
Receptor Through In Silico Molecular Modeling
pdb|2YLQ|A Chain A, Targeting The Binding Function 3 Site Of The Androgen
Receptor Through In Silico Molecular Modeling
pdb|3ZQT|A Chain A, Targeting The Binding Function 3 Site Of The Androgen
Receptor Through In Silico Molecular Modeling
pdb|4HLW|A Chain A, Targeting The Binding Function 3 (bf3) Site Of The Human
Androgen Receptor Through Virtual Screening. 2.
Development Of 2-((2- Phenoxyethyl)
Thio)-1h-benzoimidazole Derivatives
Length = 256
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 84 GHLLLAESWRELFILG--LAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLN 141
G ++ A WR + + + P L E KSR + + +R + + EF L
Sbjct: 80 GLMVFAMGWRSFTNVNSRMLYFAPDLVFNEY-RMHKSR---MYSQCVRMRHLSQEFGWLQ 135
Query: 142 IDPYEYDYIRAITLFKTVIEDEVKDNR 168
I P E+ ++A+ LF + D +K+ +
Sbjct: 136 ITPQEFLCMKALLLFSIIPVDGLKNQK 162
>pdb|1YUC|A Chain A, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
Bound To Phospholipid And A Fragment Of Human Shp
pdb|1YUC|B Chain B, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
Bound To Phospholipid And A Fragment Of Human Shp
pdb|4DOR|A Chain A, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
In Its Apo State Bound To A Fragment Of Human Shp Box1
pdb|4DOR|B Chain B, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
In Its Apo State Bound To A Fragment Of Human Shp Box1
Length = 255
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 27/55 (49%)
Query: 190 IAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
+ +Q L Y YP Q +F ++ L LP +++I E L+++++ G
Sbjct: 184 VEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNG 238
>pdb|2AM9|A Chain A, Crystal Structure Of Human Androgen Receptor Ligand
Binding Domain In Complex With Testosterone
pdb|2AMA|A Chain A, Crystal Structure Of Human Androgen Receptor Ligand
Binding Domain In Complex With Dihydrotestosterone
pdb|2AMB|A Chain A, Crystal Structure Of Human Androgen Receptor Ligand
Binding Domain In Complex With Tetrahydrogestrinone
pdb|2PNU|A Chain A, Crystal Structure Of Human Androgen Receptor
Ligand-Binding Domain In Complex With Em-5744
pdb|3V49|A Chain A, Structure Of Ar Lbd With Activator Peptide And Sarm
Inhibitor 1
Length = 266
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 84 GHLLLAESWRELFILG--LAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLN 141
G ++ A WR + + + P L E KSR + + +R + + EF L
Sbjct: 90 GLMVFAMGWRSFTNVNSRMLYFAPDLVFNEY-RMHKSR---MYSQCVRMRHLSQEFGWLQ 145
Query: 142 IDPYEYDYIRAITLFKTVIEDEVKDNR 168
I P E+ ++A+ LF + D +K+ +
Sbjct: 146 ITPQEFLCMKALLLFSIIPVDGLKNQK 172
>pdb|2AX6|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain T877a Mutant In Complex With Hydroxyflutamide
pdb|2AX7|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain T877a Mutant In Complex With S-1
Length = 256
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 84 GHLLLAESWRELFILG--LAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLN 141
G ++ A WR + + + P L E KSR + + +R + + EF L
Sbjct: 80 GLMVFAMGWRSFTNVNSRMLYFAPDLVFNEY-RMHKSR---MYSQCVRMRHLSQEFGWLQ 135
Query: 142 IDPYEYDYIRAITLFKTVIEDEVKDNR 168
I P E+ ++A+ LF + D +K+ +
Sbjct: 136 ITPQEFLCMKALLLFSIIPVDGLKNQK 162
>pdb|2Q7K|A Chain A, The Androgen Receptor Prostate Cancer Mutant H874y Ligand
Binding Domain Bound With Testosterone And An Ar 20-30
Peptide
pdb|2Q7L|A Chain A, The Androgen Receptor Prostate Cancer Mutant H874y Ligand
Binding Domain Bound With Testosterone And A Tif2 Box3
Coactivator Peptide 740-753
Length = 257
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 84 GHLLLAESWRELFILG--LAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLN 141
G ++ A WR + + + P L E KSR + + +R + + EF L
Sbjct: 81 GLMVFAMGWRSFTNVNSRMLYFAPDLVFNEY-RMHKSR---MYSQCVRMRHLSQEFGWLQ 136
Query: 142 IDPYEYDYIRAITLFKTVIEDEVKDNR 168
I P E+ ++A+ LF + D +K+ +
Sbjct: 137 ITPQEFLCMKALLLFSIIPVDGLKNQK 163
>pdb|4DOS|A Chain A, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
Bound To Dlpc And A Fragment Of Tif-2
Length = 242
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 27/55 (49%)
Query: 190 IAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
+ +Q L Y YP Q +F ++ L LP +++I E L+++++ G
Sbjct: 174 VEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNG 228
>pdb|1ZDU|A Chain A, The Crystal Structure Of Human Liver Receptor Homologue-1
Length = 245
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 27/55 (49%)
Query: 190 IAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
+ +Q L Y YP Q +F ++ L LP +++I E L+++++ G
Sbjct: 174 VEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNG 228
>pdb|3PLZ|A Chain A, Human Lrh1 Lbd Bound To Gr470
pdb|3PLZ|B Chain B, Human Lrh1 Lbd Bound To Gr470
Length = 257
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 27/55 (49%)
Query: 190 IAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
+ +Q L Y YP Q +F ++ L LP +++I E L+++++ G
Sbjct: 186 VEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNG 240
>pdb|1YOK|A Chain A, Crystal Structure Of Human Lrh-1 Bound With Tif-2 Peptide
And Phosphatidylglycerol
Length = 256
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 27/55 (49%)
Query: 190 IAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
+ +Q L Y YP Q +F ++ L LP +++I E L+++++ G
Sbjct: 185 VEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNG 239
>pdb|1ZH7|A Chain A, Structural And Biochemical Basis For Selective Repression
Of The Orphan Nuclear Receptor Lrh-1 By Shp
pdb|1ZH7|B Chain B, Structural And Biochemical Basis For Selective Repression
Of The Orphan Nuclear Receptor Lrh-1 By Shp
Length = 243
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/61 (22%), Positives = 30/61 (49%)
Query: 184 LRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNII 243
L ++ + +Q L Y YP Q +F ++ L LP +++I + L+++++
Sbjct: 166 LENLQLVEGVQEQVNAALLDYTVCNYPQQTEKFGQLLLRLPEIRAISKQAEDYLYYKHVN 225
Query: 244 G 244
G
Sbjct: 226 G 226
>pdb|1LV2|A Chain A, Hepatocyte Nuclear Factor 4 Is A Transcription Factor That
Constitutively Binds Fatty Acids
Length = 229
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 23/109 (21%)
Query: 137 FKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRXXXXXXXXXEHPES-CLRDVIAIAAIQG 195
F+ + ID EY ++AI F P++ L D + I ++
Sbjct: 128 FQEIQIDDNEYACLKAIVFF----------------------DPDAKGLSDPVKIKNMRF 165
Query: 196 HTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
QI L YI+ RF ++ L+LP L+SI ++E++ F + G
Sbjct: 166 QVQIGLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFG 214
>pdb|2ZVY|A Chain A, Structure Of The Periplasmic Domain Of Motb From
Salmonella (Crystal Form Ii)
pdb|2ZVY|B Chain B, Structure Of The Periplasmic Domain Of Motb From
Salmonella (Crystal Form Ii)
pdb|2ZVZ|A Chain A, Structure Of The Periplasmic Domain Of Motb From
Salmonella (Crystal Form Iii)
pdb|2ZVZ|B Chain B, Structure Of The Periplasmic Domain Of Motb From
Salmonella (Crystal Form Iii)
Length = 183
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 13/75 (17%)
Query: 24 DLGELVES-CKSR------HVDIEEEVIRFQSVLNEFKVL------NIDPYEYDYIRAIT 70
DL +L+ES K R +D+ +E +R Q + ++ + + ++PY D +RAI
Sbjct: 24 DLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIA 83
Query: 71 LFKTAFTSRRELAGH 85
+R LAGH
Sbjct: 84 PVLNGIPNRISLAGH 98
>pdb|1M7W|A Chain A, Hnf4a Ligand Binding Domain With Bound Fatty Acid
pdb|1M7W|B Chain B, Hnf4a Ligand Binding Domain With Bound Fatty Acid
pdb|1M7W|C Chain C, Hnf4a Ligand Binding Domain With Bound Fatty Acid
pdb|1M7W|D Chain D, Hnf4a Ligand Binding Domain With Bound Fatty Acid
Length = 250
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 70/172 (40%), Gaps = 36/172 (20%)
Query: 79 RRELAGHLLLAES-----WRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIRFQSV 133
R HLLL + ++++ +LG Y+ EL E + ++E V+ FQ
Sbjct: 80 RAHAGEHLLLGATKRSMVFKDVLLLG-NDYIVPRHCPELAEMSRVSIRILDELVLPFQE- 137
Query: 134 LNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRXXXXXXXXXEHPES-CLRDVIAIAA 192
L ID EY ++AI F P++ L D I
Sbjct: 138 ------LQIDDNEYACLKAIIFFD----------------------PDAKGLSDPGKIKR 169
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
++ Q+ L YI+ RF ++ L+LP L+SI ++E++ F + G
Sbjct: 170 LRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKLFG 221
>pdb|2ZOV|A Chain A, Structure Of The Periplasmic Domain Of Motb From
Salmonella (Crystal Form I)
Length = 210
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 13/75 (17%)
Query: 24 DLGELVES-CKSR------HVDIEEEVIRFQSVLNE----FKV--LNIDPYEYDYIRAIT 70
DL +L+ES K R +D+ +E +R Q + ++ FK ++PY D +RAI
Sbjct: 35 DLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPXFKTGSAEVEPYXRDILRAIA 94
Query: 71 LFKTAFTSRRELAGH 85
+R LAGH
Sbjct: 95 PVLNGIPNRISLAGH 109
>pdb|3TX7|B Chain B, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 352
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 27/55 (49%)
Query: 190 IAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
+ +Q L Y YP Q +F ++ L LP +++I E L+++++ G
Sbjct: 281 VEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNG 335
>pdb|3EB0|A Chain A, Crystal Structure Of Cgd4_240 From Cryptosporidium Parvum
In Complex With Indirubin E804
pdb|3EB0|C Chain C, Crystal Structure Of Cgd4_240 From Cryptosporidium Parvum
In Complex With Indirubin E804
Length = 383
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 67/167 (40%), Gaps = 50/167 (29%)
Query: 12 FILGLAQYLPSLDL-------GELV--ESCKSRHVDIEE--EVIRFQSVLNEFKVLNIDP 60
+LG +Y PS+DL GEL+ + S I++ +I+ + +++ ++P
Sbjct: 212 LMLGATEYTPSIDLWSIGCVFGELILGKPLFSGETSIDQLVRIIQIMGTPTKEQMIRMNP 271
Query: 61 YEYDYIRAITLFKTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESCKSRH 120
+ Y +R T L A+ WR++ L E S
Sbjct: 272 H-YTEVRFPT----------------LKAKDWRKI----------------LPEGTPSLA 298
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDN 167
+D+ E+++R++ L I+PYE + E EVK+N
Sbjct: 299 IDLLEQILRYEP------DLRINPYEAMAHPFFDHLRNSYESEVKNN 339
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.141 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,426,420
Number of Sequences: 62578
Number of extensions: 280910
Number of successful extensions: 646
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 572
Number of HSP's gapped (non-prelim): 89
length of query: 261
length of database: 14,973,337
effective HSP length: 97
effective length of query: 164
effective length of database: 8,903,271
effective search space: 1460136444
effective search space used: 1460136444
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)