BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16761
(261 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q64104|NR2E1_MOUSE Nuclear receptor subfamily 2 group E member 1 OS=Mus musculus
GN=Nr2e1 PE=1 SV=1
Length = 385
Score = 105 bits (261), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 98/183 (53%), Gaps = 23/183 (12%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 137
+LL ++WRELF+LG+AQ+ +D L V + + D ++ E+ Q V+ F
Sbjct: 216 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNTDNTDSQKLNKIISEIQALQEVVARF 275
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ L +D E+ ++ I FK V + RS R+ AIAA+Q
Sbjct: 276 RQLRLDATEFACLKCIVTFKAVPTHSGSELRS--------------FRNAAAIAALQDEA 321
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ LN YIHT YP+QP RF K+ L+LP L+SI +EE+FF+ IG N I + + MY
Sbjct: 322 QLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIG-NVPITRLLSDMY 380
Query: 258 KNA 260
K++
Sbjct: 381 KSS 383
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 53
+LL ++WRELF+LG+AQ+ +D L V + + D ++ E+ Q V+ F
Sbjct: 216 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNTDNTDSQKLNKIISEIQALQEVVARF 275
Query: 54 KVLNIDPYEYDYIRAITLFKTAFT 77
+ L +D E+ ++ I FK T
Sbjct: 276 RQLRLDATEFACLKCIVTFKAVPT 299
>sp|Q9Y466|NR2E1_HUMAN Nuclear receptor subfamily 2 group E member 1 OS=Homo sapiens
GN=NR2E1 PE=2 SV=1
Length = 385
Score = 104 bits (260), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 97/183 (53%), Gaps = 23/183 (12%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 137
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 216 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARF 275
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ L +D E+ ++ I FK V + RS R+ AIAA+Q
Sbjct: 276 RQLRLDATEFACLKCIVTFKAVPTHSGSELRS--------------FRNAAAIAALQDEA 321
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ LN YIHT YP+QP RF K+ L+LP L+SI +EE+FF+ IG N I + + MY
Sbjct: 322 QLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIG-NVPITRLLSDMY 380
Query: 258 KNA 260
K++
Sbjct: 381 KSS 383
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 53
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 216 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARF 275
Query: 54 KVLNIDPYEYDYIRAITLFKTAFT 77
+ L +D E+ ++ I FK T
Sbjct: 276 RQLRLDATEFACLKCIVTFKAVPT 299
>sp|Q91379|NR2E1_CHICK Nuclear receptor subfamily 2 group E member 1 OS=Gallus gallus
GN=NR2E1 PE=2 SV=1
Length = 385
Score = 104 bits (260), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 97/183 (53%), Gaps = 23/183 (12%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 137
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 216 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARF 275
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ L +D E+ ++ I FK V + RS R+ AIAA+Q
Sbjct: 276 RQLRLDATEFACLKCIVTFKAVPTHSGSELRS--------------FRNAAAIAALQDEA 321
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ LN YIHT YP+QP RF K+ L+LP L+SI +EE+FF+ IG N I + + MY
Sbjct: 322 QLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIG-NVPITRLLSDMY 380
Query: 258 KNA 260
K++
Sbjct: 381 KSS 383
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGEL--VESCKSRHVDIEE------EVIRFQSVLNEF 53
+LL ++WRELF+LG+AQ+ +D L V + D ++ E+ Q V+ F
Sbjct: 216 MLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARF 275
Query: 54 KVLNIDPYEYDYIRAITLFKTAFT 77
+ L +D E+ ++ I FK T
Sbjct: 276 RQLRLDATEFACLKCIVTFKAVPT 299
>sp|P70052|NR2E1_XENLA Nuclear receptor subfamily 2 group E member 1 OS=Xenopus laevis
GN=nr2e1 PE=2 SV=1
Length = 386
Score = 103 bits (258), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 103/183 (56%), Gaps = 22/183 (12%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELV-------ESCKSRHVD-IEEEVIRFQSVLNEF 137
+LL ++WRELF+LG+AQ+ +D L+ E+ +S ++ I E+ Q V++ F
Sbjct: 216 MLLEDAWRELFVLGIAQWAIPVDASTLLAVSGMNNENTESPKLNKIISEIQALQDVVSRF 275
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ L +D E+ ++ I FK + S+ GSE R+ AI+A+Q
Sbjct: 276 RQLRLDATEFACLKCIVTFKAGV-----------STHSGSELRN--FRNAAAISALQDEA 322
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ LN YIHT YP+QP RF K+ L+LP L+SI +EE+FF+ IG N I + + MY
Sbjct: 323 QLTLNSYIHTRYPTQPCRFGKLLLLLPALRSINPSTIEEVFFKKTIG-NVPITRVLSDMY 381
Query: 258 KNA 260
K++
Sbjct: 382 KSS 384
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 8/85 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELV-------ESCKSRHVD-IEEEVIRFQSVLNEF 53
+LL ++WRELF+LG+AQ+ +D L+ E+ +S ++ I E+ Q V++ F
Sbjct: 216 MLLEDAWRELFVLGIAQWAIPVDASTLLAVSGMNNENTESPKLNKIISEIQALQDVVSRF 275
Query: 54 KVLNIDPYEYDYIRAITLFKTAFTS 78
+ L +D E+ ++ I FK ++
Sbjct: 276 RQLRLDATEFACLKCIVTFKAGVST 300
>sp|Q9YGL3|NR2E1_ORYLA Nuclear receptor subfamily 2 group E member 1 OS=Oryzias latipes
GN=nr2e1 PE=2 SV=1
Length = 396
Score = 100 bits (250), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 101/183 (55%), Gaps = 23/183 (12%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELV-------ESCKSRHVD-IEEEVIRFQSVLNEF 137
+LL ++WRELF+LG+AQ+ +D L+ E+ +++ ++ I E+ Q V+ F
Sbjct: 227 ILLEDAWRELFVLGIAQWAIPVDSTTLLAVSGLNSENMEAQRMNKIMAEIQALQEVVTRF 286
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ + +D E+ ++ I FK V + R+ R+ AIAA+Q
Sbjct: 287 RQMRLDATEFACLKCIVTFKAVPTQGSAELRA--------------FRNASAIAALQDEA 332
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q+ LN YIHT YP+QP RF K+ L+LP L+S+ +EE+FF+ IG N I + + MY
Sbjct: 333 QLTLNSYIHTRYPTQPCRFGKLLLLLPALRSVSPSTIEEVFFKKNIG-NVPITRLLSDMY 391
Query: 258 KNA 260
K++
Sbjct: 392 KSS 394
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 8/84 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELV-------ESCKSRHVD-IEEEVIRFQSVLNEF 53
+LL ++WRELF+LG+AQ+ +D L+ E+ +++ ++ I E+ Q V+ F
Sbjct: 227 ILLEDAWRELFVLGIAQWAIPVDSTTLLAVSGLNSENMEAQRMNKIMAEIQALQEVVTRF 286
Query: 54 KVLNIDPYEYDYIRAITLFKTAFT 77
+ + +D E+ ++ I FK T
Sbjct: 287 RQMRLDATEFACLKCIVTFKAVPT 310
>sp|P18102|TLL_DROME Protein tailless OS=Drosophila melanogaster GN=tll PE=2 SV=1
Length = 452
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 101/193 (52%), Gaps = 29/193 (15%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD------IEEEVIRFQSVLNEFKV 139
LLL ESW+E FIL +AQYL ++ +L+ +S + + + EV FQ VLN+
Sbjct: 263 LLLEESWKEFFILAMAQYLMPMNFAQLLFVYESENANREIMGMVTREVHAFQEVLNQLCH 322
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDD--------GSEHPESC-------L 184
LNID EY+ +RAI+LF+ K S+SS++D GS P S L
Sbjct: 323 LNIDSTEYECLRAISLFR-------KSPPSASSTEDLANSSILTGSGSPNSSASAESRGL 375
Query: 185 RDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
+ +AA+ + L+ YI +PSQP RF + ++ + + S +EELFFR IG
Sbjct: 376 LESGKVAAMHNDARSALHNYIQRTHPSQPMRFQTLLGVVQLMHKVSSFTIEELFFRKTIG 435
Query: 245 HNTTIKKTIWHMY 257
+ TI + I MY
Sbjct: 436 -DITIVRLISDMY 447
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 58/99 (58%), Gaps = 9/99 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD------IEEEVIRFQSVLNEFKV 55
LLL ESW+E FIL +AQYL ++ +L+ +S + + + EV FQ VLN+
Sbjct: 263 LLLEESWKEFFILAMAQYLMPMNFAQLLFVYESENANREIMGMVTREVHAFQEVLNQLCH 322
Query: 56 LNIDPYEYDYIRAITLFK---TAFTSRRELAGHLLLAES 91
LNID EY+ +RAI+LF+ + +S +LA +L S
Sbjct: 323 LNIDSTEYECLRAISLFRKSPPSASSTEDLANSSILTGS 361
>sp|O16845|TLL_DROVI Protein tailless OS=Drosophila virilis GN=tll PE=3 SV=1
Length = 450
Score = 94.7 bits (234), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 99/186 (53%), Gaps = 15/186 (8%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD------IEEEVIRFQSVLNEFKV 139
LLL ESW+E FIL +AQYL ++ +L+ +S + + + EV FQ+V N
Sbjct: 261 LLLEESWKEFFILAMAQYLMPMNFAQLLFVYESENANREIVTIVAREVHAFQAVPNRLCH 320
Query: 140 LNIDPYEYDYIRAITLF-KTVIEDEVKDNRSSSSSDDGSEHPESC-------LRDVIAIA 191
LNID EY+ +RAI+LF K+ ++ ++SS GS P S L + +A
Sbjct: 321 LNIDSTEYECLRAISLFRKSPPAASSTEDLANSSILTGSGSPNSSASAESRGLLESSKVA 380
Query: 192 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 251
A+ + L+ YI +P+QP RF + ++ + + S +EELFFR IG + TI +
Sbjct: 381 AMHNDARNALHNYISRTHPNQPLRFQTLLGVVTLMHKVSSFTIEELFFRKTIG-DITIVR 439
Query: 252 TIWHMY 257
I MY
Sbjct: 440 LISDMY 445
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 57/99 (57%), Gaps = 9/99 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD------IEEEVIRFQSVLNEFKV 55
LLL ESW+E FIL +AQYL ++ +L+ +S + + + EV FQ+V N
Sbjct: 261 LLLEESWKEFFILAMAQYLMPMNFAQLLFVYESENANREIVTIVAREVHAFQAVPNRLCH 320
Query: 56 LNIDPYEYDYIRAITLFK---TAFTSRRELAGHLLLAES 91
LNID EY+ +RAI+LF+ A +S +LA +L S
Sbjct: 321 LNIDSTEYECLRAISLFRKSPPAASSTEDLANSSILTGS 359
>sp|Q9Y5X4|NR2E3_HUMAN Photoreceptor-specific nuclear receptor OS=Homo sapiens GN=NR2E3
PE=1 SV=1
Length = 410
Score = 81.6 bits (200), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 91/183 (49%), Gaps = 32/183 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVE--------SCKSRHVDIEEEVIRFQSVLNEF 137
+LL E+W ELF+LG Q+ LD L+ + R E Q ++ F
Sbjct: 251 ILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAQGRLTLASMETRVLQETISRF 310
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGH 196
+ L +DP E+ ++A+ LFK PE+ L+D + A+Q
Sbjct: 311 RALAVDPTEFACMKALVLFK----------------------PETRGLKDPEHVEALQDQ 348
Query: 197 TQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
+Q+ L+++ +PSQP RF K+ L+LP L+ I + +E LFFR IG NT ++K + M
Sbjct: 349 SQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIG-NTPMEKLLCDM 407
Query: 257 YKN 259
+KN
Sbjct: 408 FKN 410
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVE--------SCKSRHVDIEEEVIRFQSVLNEF 53
+LL E+W ELF+LG Q+ LD L+ + R E Q ++ F
Sbjct: 251 ILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAQGRLTLASMETRVLQETISRF 310
Query: 54 KVLNIDPYEYDYIRAITLFK 73
+ L +DP E+ ++A+ LFK
Sbjct: 311 RALAVDPTEFACMKALVLFK 330
>sp|Q9TTF0|NR2E3_BOVIN Photoreceptor-specific nuclear receptor OS=Bos taurus GN=NR2E3 PE=1
SV=2
Length = 411
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 92/183 (50%), Gaps = 32/183 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVE--------SCKSRHVDIEEEVIRFQSVLNEF 137
+LL E+W ELF+LG Q+ LD L+ S + R V E Q ++ F
Sbjct: 252 ILLEEAWSELFLLGAIQWSLPLDNCPLLALPEASAGGSSQGRLVLASAETRILQETISRF 311
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGH 196
+ L +DP E+ ++A+ LFK PE+ L+D + A+Q
Sbjct: 312 RALAVDPTEFACMKALVLFK----------------------PETRGLKDPEHVEALQDQ 349
Query: 197 TQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
+Q+ L+++ +PSQ RF K+ L+LP L+ I S +E LFFR IG NT ++K + M
Sbjct: 350 SQVMLSQHSKAHHPSQLVRFGKLLLLLPSLRFISSERVELLFFRKTIG-NTPMEKLLCDM 408
Query: 257 YKN 259
+KN
Sbjct: 409 FKN 411
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVE--------SCKSRHVDIEEEVIRFQSVLNEF 53
+LL E+W ELF+LG Q+ LD L+ S + R V E Q ++ F
Sbjct: 252 ILLEEAWSELFLLGAIQWSLPLDNCPLLALPEASAGGSSQGRLVLASAETRILQETISRF 311
Query: 54 KVLNIDPYEYDYIRAITLFK 73
+ L +DP E+ ++A+ LFK
Sbjct: 312 RALAVDPTEFACMKALVLFK 331
>sp|Q9TTR7|COT2_BOVIN COUP transcription factor 2 OS=Bos taurus GN=NR2F2 PE=2 SV=1
Length = 414
Score = 78.2 bits (191), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 244 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 303
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L DV + ++Q +
Sbjct: 304 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDVAHVESLQEKS 341
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 342 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 399
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 244 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 303
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 304 ALHVDSAEYSCLKAIVLFTS 323
>sp|O09018|COT2_RAT COUP transcription factor 2 OS=Rattus norvegicus GN=Nr2f2 PE=1 SV=1
Length = 414
Score = 78.2 bits (191), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 244 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 303
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L DV + ++Q +
Sbjct: 304 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDVAHVESLQEKS 341
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 342 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 399
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 244 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 303
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 304 ALHVDSAEYSCLKAIVLFTS 323
>sp|P43135|COT2_MOUSE COUP transcription factor 2 OS=Mus musculus GN=Nr2f2 PE=1 SV=2
Length = 414
Score = 78.2 bits (191), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 244 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 303
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L DV + ++Q +
Sbjct: 304 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDVAHVESLQEKS 341
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 342 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 399
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 244 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 303
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 304 ALHVDSAEYSCLKAIVLFTS 323
>sp|P24468|COT2_HUMAN COUP transcription factor 2 OS=Homo sapiens GN=NR2F2 PE=1 SV=1
Length = 414
Score = 78.2 bits (191), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 244 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 303
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L DV + ++Q +
Sbjct: 304 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDVAHVESLQEKS 341
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 342 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 399
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 244 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 303
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 304 ALHVDSAEYSCLKAIVLFTS 323
>sp|Q90733|COT2_CHICK COUP transcription factor 2 OS=Gallus gallus GN=NR2F2 PE=2 SV=1
Length = 410
Score = 77.8 bits (190), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 240 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 299
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L DV + ++Q +
Sbjct: 300 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDVAHVESLQEKS 337
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 338 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 395
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 240 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 299
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 300 ALHVDSAEYSCLKAIVLFTS 319
>sp|P16375|7UP1_DROME Steroid receptor seven-up, isoforms B/C OS=Drosophila melanogaster
GN=svp PE=2 SV=1
Length = 543
Score = 77.4 bits (189), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 84/174 (48%), Gaps = 32/174 (18%)
Query: 92 WRELFILGLAQYLPSLDLGELVESCK--------SRHVDIEEEVIRFQSVLNEFKVLNID 143
W ELF+L +Q L + L+ + R V + + FQ + + K L++D
Sbjct: 378 WSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVD 437
Query: 144 PYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHTQIFLN 202
EY ++AI LF T ++C L DV I ++Q +Q L
Sbjct: 438 SAEYSCLKAIVLFTT----------------------DACGLSDVTHIESLQEKSQCALE 475
Query: 203 KYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
+Y T YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 476 EYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIETLIRDM 528
Score = 35.8 bits (81), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 8 WRELFILGLAQYLPSLDLGELVESCK--------SRHVDIEEEVIRFQSVLNEFKVLNID 59
W ELF+L +Q L + L+ + R V + + FQ + + K L++D
Sbjct: 378 WSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVD 437
Query: 60 PYEYDYIRAITLFKT 74
EY ++AI LF T
Sbjct: 438 SAEYSCLKAIVLFTT 452
>sp|Q9QXZ7|NR2E3_MOUSE Photoreceptor-specific nuclear receptor OS=Mus musculus GN=Nr2e3
PE=1 SV=1
Length = 395
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 91/181 (50%), Gaps = 30/181 (16%)
Query: 86 LLLAESWRELFILGLAQY------LPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKV 139
+LL E+W ELF+LG Q+ P L E S + R E Q ++ F+
Sbjct: 238 ILLEEAWNELFLLGAIQWSLPLDSCPLLAPPEASGSSQGRLALASAETRFLQETISRFRA 297
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHTQ 198
L +DP E+ ++A+ LFK PE+ L+D + A+Q +Q
Sbjct: 298 LAVDPTEFACLKALVLFK----------------------PETRGLKDPEHVEALQDQSQ 335
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 258
+ L+++ +PSQP RF K+ L+LP L+ + + +E LFFR IG NT ++K + M+K
Sbjct: 336 VMLSQHSKAHHPSQPVRFGKLLLLLPSLRFLTAERIELLFFRKTIG-NTPMEKLLCDMFK 394
Query: 259 N 259
N
Sbjct: 395 N 395
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 2 LLLAESWRELFILGLAQY------LPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKV 55
+LL E+W ELF+LG Q+ P L E S + R E Q ++ F+
Sbjct: 238 ILLEEAWNELFLLGAIQWSLPLDSCPLLAPPEASGSSQGRLALASAETRFLQETISRFRA 297
Query: 56 LNIDPYEYDYIRAITLFK 73
L +DP E+ ++A+ LFK
Sbjct: 298 LAVDPTEFACLKALVLFK 315
>sp|Q06725|N2F1A_DANRE Nuclear receptor subfamily 2 group F member 1-A OS=Danio rerio
GN=nr2f1a PE=2 SV=1
Length = 411
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 241 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 300
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY I+AI LF + ++C L D I ++Q +
Sbjct: 301 ALHVDSAEYSCIKAIVLFTS----------------------DACGLSDAAHIESLQEKS 338
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 339 QCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 396
Score = 38.1 bits (87), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 241 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 300
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY I+AI LF +
Sbjct: 301 ALHVDSAEYSCIKAIVLFTS 320
>sp|Q6PH18|N2F1B_DANRE Nuclear receptor subfamily 2 group F member 1-B OS=Danio rerio
GN=nr2f1b PE=2 SV=1
Length = 389
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 84/179 (46%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 219 LLRLTWSELFVLNAAQSSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRFFQEQVEKLK 278
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L +D EY +AI LF + ++C L D+ I +Q +
Sbjct: 279 ALQVDSAEYSCAKAIVLFTS----------------------DACGLSDIPHIEGLQEKS 316
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QPTRF K+ L LP L+ + S V+E+LFF ++G T I+ I M
Sbjct: 317 QCALEEYVRSQYPNQPTRFGKLLLRLPALRMVSSSVIEQLFFVRLVG-KTPIETLIRDM 374
Score = 36.2 bits (82), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 219 LLRLTWSELFVLNAAQSSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRFFQEQVEKLK 278
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L +D EY +AI LF +
Sbjct: 279 ALQVDSAEYSCAKAIVLFTS 298
>sp|Q60632|COT1_MOUSE COUP transcription factor 1 OS=Mus musculus GN=Nr2f1 PE=2 SV=2
Length = 422
Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 250 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 309
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L D I ++Q +
Sbjct: 310 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDAAHIESLQEKS 347
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 348 QCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 405
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 250 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 309
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 310 ALHVDSAEYSCLKAIVLFTS 329
>sp|P10589|COT1_HUMAN COUP transcription factor 1 OS=Homo sapiens GN=NR2F1 PE=1 SV=1
Length = 423
Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 251 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 310
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L D I ++Q +
Sbjct: 311 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDAAHIESLQEKS 348
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 349 QCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 406
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 251 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 310
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 311 ALHVDSAEYSCLKAIVLFTS 330
>sp|Q9TTR8|COT1_BOVIN COUP transcription factor 1 OS=Bos taurus GN=NR2F1 PE=2 SV=1
Length = 424
Score = 75.1 bits (183), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 252 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 311
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L++D EY ++AI LF + ++C L D I ++Q +
Sbjct: 312 ALHVDSAEYSCLKAIVLFTS----------------------DACGLSDAAHIESLQEKS 349
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 350 QCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 407
Score = 37.0 bits (84), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL +W ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 252 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK 311
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L++D EY ++AI LF +
Sbjct: 312 ALHVDSAEYSCLKAIVLFTS 331
>sp|O09017|NR2F6_RAT Nuclear receptor subfamily 2 group F member 6 OS=Rattus norvegicus
GN=Nr2f6 PE=2 SV=1
Length = 390
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 84/179 (46%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL SW ELF+L AQ L L+ + R V ++V FQ +++
Sbjct: 221 LLRLSWSELFVLNAAQAPVPLHTAPLLAAAGLHAGPMAAERAVAFMDQVRAFQEQVDKLG 280
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L +D EY ++AI LF P++C L D + ++Q
Sbjct: 281 RLQVDAAEYGCLKAIALFT----------------------PDACGLSDPAHVESLQEKA 318
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+ I M
Sbjct: 319 QVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIETLIRDM 376
Score = 38.1 bits (87), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL SW ELF+L AQ L L+ + R V ++V FQ +++
Sbjct: 221 LLRLSWSELFVLNAAQAPVPLHTAPLLAAAGLHAGPMAAERAVAFMDQVRAFQEQVDKLG 280
Query: 55 VLNIDPYEYDYIRAITLF 72
L +D EY ++AI LF
Sbjct: 281 RLQVDAAEYGCLKAIALF 298
>sp|P49116|NR2C2_HUMAN Nuclear receptor subfamily 2 group C member 2 OS=Homo sapiens
GN=NR2C2 PE=1 SV=1
Length = 596
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 79/198 (39%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 406 AFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRI 465
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N L+ID YEY Y++AI LF +HP
Sbjct: 466 KQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFS-------------------PDHP 506
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ Y R +I + LP L+ + S + EELFF
Sbjct: 507 G--LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFT 564
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N +I I ++ K
Sbjct: 565 GLIG-NVSIDSIIPYILK 581
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 418 LVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE 477
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L+ID YEY Y++AI LF
Sbjct: 478 FCNSMAKLDIDGYEYAYLKAIVLF 501
>sp|P49117|NR2C2_MOUSE Nuclear receptor subfamily 2 group C member 2 OS=Mus musculus
GN=Nr2c2 PE=1 SV=1
Length = 596
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 79/198 (39%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 406 AFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRI 465
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N L+ID YEY Y++AI LF +HP
Sbjct: 466 KQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFS-------------------PDHP 506
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ Y R +I + LP L+ + S + EELFF
Sbjct: 507 G--LTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFT 564
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N +I I ++ K
Sbjct: 565 GLIG-NVSIDSIIPYILK 581
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 418 LVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE 477
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L+ID YEY Y++AI LF
Sbjct: 478 FCNSMAKLDIDGYEYAYLKAIVLF 501
>sp|P55094|NR2C2_RAT Nuclear receptor subfamily 2 group C member 2 OS=Rattus norvegicus
GN=Nr2c2 PE=2 SV=1
Length = 596
Score = 64.3 bits (155), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 79/198 (39%), Gaps = 36/198 (18%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRH 120
AF + + L+ W ELF LGLAQ + L ++ + R
Sbjct: 406 AFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRI 465
Query: 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ E + + Q N L+ID +EY Y++AI LF +HP
Sbjct: 466 KQVMEHIWKLQEFCNSMAKLDIDGHEYAYLKAIVLFS-------------------PDHP 506
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L I Q Q+ L Y+ Y R +I + LP L+ + S + EELFF
Sbjct: 507 G--LTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFT 564
Query: 241 NIIGHNTTIKKTIWHMYK 258
+IG N +I I ++ K
Sbjct: 565 GLIG-NVSIDSIIPYILK 581
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ + L ++ + R + E + + Q
Sbjct: 418 LVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE 477
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L+ID +EY Y++AI LF
Sbjct: 478 FCNSMAKLDIDGHEYAYLKAIVLF 501
>sp|P10588|NR2F6_HUMAN Nuclear receptor subfamily 2 group F member 6 OS=Homo sapiens
GN=NR2F6 PE=1 SV=2
Length = 404
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 83/179 (46%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQY-LP-------SLDLGELVESCKSRHVDIEEEVIRFQSVLNEFK 138
LL SW ELF+L AQ LP + R V ++V FQ +++
Sbjct: 234 LLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLG 293
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L +D EY ++AI LF P++C L D + ++Q
Sbjct: 294 RLQVDSAEYGCLKAIALFT----------------------PDACGLSDPAHVESLQEKA 331
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+ I M
Sbjct: 332 QVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIETLIRDM 389
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 3 LLAESWRELFILGLAQY-LP-------SLDLGELVESCKSRHVDIEEEVIRFQSVLNEFK 54
LL SW ELF+L AQ LP + R V ++V FQ +++
Sbjct: 234 LLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLG 293
Query: 55 VLNIDPYEYDYIRAITLF 72
L +D EY ++AI LF
Sbjct: 294 RLQVDSAEYGCLKAIALF 311
>sp|P43136|NR2F6_MOUSE Nuclear receptor subfamily 2 group F member 6 OS=Mus musculus
GN=Nr2f6 PE=1 SV=2
Length = 390
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 83/179 (46%), Gaps = 32/179 (17%)
Query: 87 LLAESWRELFILGLAQY-LP-------SLDLGELVESCKSRHVDIEEEVIRFQSVLNEFK 138
LL SW ELF+L AQ LP + R V ++V FQ +++
Sbjct: 221 LLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLG 280
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
L +D EY ++AI LF P++C L D + ++Q
Sbjct: 281 RLQVDAAEYGCLKAIALFT----------------------PDACGLSDPAHVESLQEKA 318
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+ I M
Sbjct: 319 QVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIETLIRDM 376
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 3 LLAESWRELFILGLAQY-LP-------SLDLGELVESCKSRHVDIEEEVIRFQSVLNEFK 54
LL SW ELF+L AQ LP + R V ++V FQ +++
Sbjct: 221 LLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLG 280
Query: 55 VLNIDPYEYDYIRAITLF 72
L +D EY ++AI LF
Sbjct: 281 RLQVDAAEYGCLKAIALF 298
>sp|Q06726|NR2F5_DANRE Nuclear receptor subfamily 2 group F member 5 OS=Danio rerio
GN=nr2f5 PE=2 SV=1
Length = 403
Score = 61.2 bits (147), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 138
LL SW ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 219 LLRMSWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSAERVVAFMDHIRVFQEQVEKLK 278
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
L +D EY +++I LF + D + L DV + +IQ +Q
Sbjct: 279 ALQVDTAEYSCLKSIVLFTS---DAMG------------------LSDVAHVESIQEKSQ 317
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L +Y+ YP+QP RF ++ L LP L+ + S V+E+LFF ++G
Sbjct: 318 CALEEYVRNQYPNQPNRFGRLLLRLPSLRIVSSPVIEQLFFVRLVG 363
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESC--------KSRHVDIEEEVIRFQSVLNEFK 54
LL SW ELF+L AQ L + L+ + R V + + FQ + + K
Sbjct: 219 LLRMSWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSAERVVAFMDHIRVFQEQVEKLK 278
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L +D EY +++I LF +
Sbjct: 279 ALQVDTAEYSCLKSIVLFTS 298
>sp|Q62227|NR0B2_MOUSE Nuclear receptor subfamily 0 group B member 2 OS=Mus musculus
GN=Nr0b2 PE=1 SV=1
Length = 260
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 67/177 (37%), Gaps = 40/177 (22%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEE-------------------V 127
LL W LF+LGLAQ + ++ E + + +EE V
Sbjct: 90 LLECCWGPLFLLGLAQDAVTFEVAEAPVPSILKKILLEEASSGTQGAQPSDRPQPSLAAV 149
Query: 128 IRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDV 187
Q L F L + P EY Y++ LF + LR
Sbjct: 150 QWLQRCLESFWSLELGPKEYAYLKGTILFNPDVPG---------------------LRAS 188
Query: 188 IAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
IA +Q L + + YP+ R +I L+ LK+IP +L +LFFR I+G
Sbjct: 189 CHIAHLQQEAHWALCEVLEPWYPASQGRLARILLMASTLKNIPGTLLVDLFFRPIMG 245
>sp|P13056|NR2C1_HUMAN Nuclear receptor subfamily 2 group C member 1 OS=Homo sapiens
GN=NR2C1 PE=1 SV=2
Length = 603
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 77/186 (41%), Gaps = 36/186 (19%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 132
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 425 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQDKMSTERRKLLMEHIFKLQE 484
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
N L ID YEY Y++AI LF +HP L ++ I
Sbjct: 485 FCNSMVKLCIDGYEYAYLKAIVLFS-------------------PDHPS--LENMEQIEK 523
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
Q + YI YP R ++ L LP L+ + + + EELFF+ +IG N I
Sbjct: 524 FQEKAYVEFQDYITKTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIG-NIRIDSV 582
Query: 253 IWHMYK 258
I H+ K
Sbjct: 583 IPHILK 588
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 425 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQDKMSTERRKLLMEHIFKLQE 484
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L ID YEY Y++AI LF
Sbjct: 485 FCNSMVKLCIDGYEYAYLKAIVLF 508
>sp|A0JNE3|NR2C1_BOVIN Nuclear receptor subfamily 2 group C member 1 OS=Bos taurus
GN=NR2C1 PE=2 SV=1
Length = 608
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 77/186 (41%), Gaps = 36/186 (19%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 132
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 430 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHSSLQQDKISAERRKLLMEHIFKLQE 489
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
N L ID YEY Y++AI LF +HP L ++ I
Sbjct: 490 FCNSMVKLCIDGYEYAYLKAIVLFS-------------------PDHPG--LENMEQIEK 528
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
Q + YI YP R ++ L LP L+ + + + EELFF+ +IG N I
Sbjct: 529 FQEKAYVEFQDYITKTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIG-NVRIDSV 587
Query: 253 IWHMYK 258
I H+ K
Sbjct: 588 IPHILK 593
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 430 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHSSLQQDKISAERRKLLMEHIFKLQE 489
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L ID YEY Y++AI LF
Sbjct: 490 FCNSMVKLCIDGYEYAYLKAIVLF 513
>sp|Q5RCZ5|NR2C1_PONAB Nuclear receptor subfamily 2 group C member 1 OS=Pongo abelii
GN=NR2C1 PE=2 SV=1
Length = 601
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 77/186 (41%), Gaps = 36/186 (19%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 132
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 426 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQDKMSTERRKLLMEHIFKLQE 485
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
N L ID YEY Y++AI LF +HP L ++ I
Sbjct: 486 FCNSMVKLCIDGYEYAYLKAIVLFS-------------------PDHPG--LENMEQIEK 524
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
Q + YI YP R ++ L LP L+ + + + EELFF+ +IG N I
Sbjct: 525 FQEKAYVEFQDYITKTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIG-NIRIDSV 583
Query: 253 IWHMYK 258
I H+ K
Sbjct: 584 IPHILK 589
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 426 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQDKMSTERRKLLMEHIFKLQE 485
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L ID YEY Y++AI LF
Sbjct: 486 FCNSMVKLCIDGYEYAYLKAIVLF 509
>sp|Q95K90|NR2C1_MACFA Nuclear receptor subfamily 2 group C member 1 OS=Macaca
fascicularis GN=NR2C1 PE=2 SV=1
Length = 603
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 77/186 (41%), Gaps = 36/186 (19%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 132
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 425 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQDKMSTERRKLLMEHIFKLQE 484
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
N L ID YEY Y++AI LF +HP L ++ I
Sbjct: 485 FCNSMVKLCIDGYEYAYLKAIVLFS-------------------PDHPG--LENMEQIEK 523
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
Q + YI YP R ++ L LP L+ + + + EELFF+ +IG N I
Sbjct: 524 FQEKAYVEFQDYITKTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIG-NIRIDSV 582
Query: 253 IWHMYK 258
I H+ K
Sbjct: 583 IPHILK 588
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 425 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQDKMSTERRKLLMEHIFKLQE 484
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L ID YEY Y++AI LF
Sbjct: 485 FCNSMVKLCIDGYEYAYLKAIVLF 508
>sp|Q505F1|NR2C1_MOUSE Nuclear receptor subfamily 2 group C member 1 OS=Mus musculus
GN=Nr2c1 PE=1 SV=3
Length = 590
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 77/186 (41%), Gaps = 36/186 (19%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 132
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 412 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHSSLQQDKMSPERRKSLMEHIFKLQE 471
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
N L ID +EY Y++AI LF +HP L ++ I
Sbjct: 472 FCNSMVKLCIDGHEYAYLKAIVLFS-------------------PDHPG--LENMELIER 510
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
Q + YI YP R ++ L LP L+ + + + EELFF+ +IG N I
Sbjct: 511 FQEKAYVEFQDYITRTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIG-NVRIDSV 569
Query: 253 IWHMYK 258
I H+ K
Sbjct: 570 IPHILK 575
Score = 40.0 bits (92), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 412 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHSSLQQDKMSPERRKSLMEHIFKLQE 471
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L ID +EY Y++AI LF
Sbjct: 472 FCNSMVKLCIDGHEYAYLKAIVLF 495
>sp|P51129|RXRG_XENLA Retinoic acid receptor RXR-gamma OS=Xenopus laevis GN=rxrg PE=2
SV=1
Length = 470
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 63/166 (37%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + S+ G L+ + H F VL E K
Sbjct: 307 ILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHNAGVGSIFDRVLTELVSKMK 366
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+++D E +RAI LF + L + + A++
Sbjct: 367 DMDMDKSELGCLRAIVLFNPDAKG---------------------LSNAAEVEALREKVY 405
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 406 ATLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 451
>sp|Q26622|SHR2_STRPU Orphan steroid hormone receptor 2 OS=Strongylocentrotus purpuratus
GN=SHR2 PE=1 SV=1
Length = 583
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 73/173 (42%), Gaps = 35/173 (20%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 132
++ + W ELF LGLAQ ++ L ++ + R + E + + Q
Sbjct: 398 MVQKCWSELFTLGLAQCAQAMALSTILTAIVNHLQTSLQQDKLSADRVKAVMEHIWKLQE 457
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
+ L++D E+ Y++ I LF +HP L +V I
Sbjct: 458 FVTTTSKLDVDQTEFAYLKTIVLFS-------------------PDHPG--LSNVRQIEK 496
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
Q L+ Y YPS+ RF K+ L LP L+ + ++EELFF +IG+
Sbjct: 497 FQEMAISELHDYEAQTYPSKLNRFSKLLLRLPTLRLLSPAIMEELFFAGLIGN 549
Score = 34.7 bits (78), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES--------------CKSRHVDIEEEVIRFQS 48
++ + W ELF LGLAQ ++ L ++ + R + E + + Q
Sbjct: 398 MVQKCWSELFTLGLAQCAQAMALSTILTAIVNHLQTSLQQDKLSADRVKAVMEHIWKLQE 457
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
+ L++D E+ Y++ I LF
Sbjct: 458 FVTTTSKLDVDQTEFAYLKTIVLF 481
>sp|Q8VIJ4|NR2C1_RAT Nuclear receptor subfamily 2 group C member 1 OS=Rattus norvegicus
GN=Nr2c1 PE=2 SV=1
Length = 590
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 77/186 (41%), Gaps = 36/186 (19%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 132
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 412 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQDKMSPERRKLLMEHIFKLQE 471
Query: 133 VLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAA 192
N L ID +EY Y++AI LF +HP L ++ I
Sbjct: 472 FCNSMVKLCIDGHEYAYLKAIVLFS-------------------PDHPG--LENMELIEK 510
Query: 193 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 252
Q + YI YP R ++ L LP L+ + + + EELFF+ +IG N I
Sbjct: 511 FQEKAYVEFQDYITRTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIG-NVRIDSV 569
Query: 253 IWHMYK 258
I H+ K
Sbjct: 570 IPHILK 575
Score = 38.5 bits (88), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVES---C-----------KSRHVDIEEEVIRFQS 48
L+ W ELF LGLAQ +++ ++ + C R + E + + Q
Sbjct: 412 LVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQDKMSPERRKLLMEHIFKLQE 471
Query: 49 VLNEFKVLNIDPYEYDYIRAITLF 72
N L ID +EY Y++AI LF
Sbjct: 472 FCNSMVKLCIDGHEYAYLKAIVLF 495
>sp|Q90415|RXRAB_DANRE Retinoic acid receptor RXR-alpha-B OS=Danio rerio GN=rxrab PE=2
SV=1
Length = 379
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 70/178 (39%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 216 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHTAGVGAIFDRVLTELVSKMR 275
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N S + SE + A++
Sbjct: 276 DMQMDKTELGCLRAIVLF----------NPDSKGLSNPSE-----------VEALRERVY 314
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 315 ASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 371
>sp|P97947|NR0B2_RAT Nuclear receptor subfamily 0 group B member 2 OS=Rattus norvegicus
GN=Nr0b2 PE=1 SV=1
Length = 260
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 40/177 (22%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEE-------------------V 127
LL W LF+LGLAQ + ++ E + + +EE V
Sbjct: 90 LLEGCWGPLFLLGLAQDTVTFEVAEAPVPSILKKILLEEPNSGAQGAQPPDPPQPSLAAV 149
Query: 128 IRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDV 187
Q L F L + P EY Y++ LF + L
Sbjct: 150 QWLQHCLESFWSLELGPKEYAYLKGTILFNPDVPG---------------------LHAS 188
Query: 188 IAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
IA +Q L + + YP+ R +I L+ LK+I +L +LFFR +IG
Sbjct: 189 CHIAHLQQEAHWALCEVLEPWYPASQGRLARILLMASTLKNISCTLLVDLFFRPVIG 245
>sp|P28701|RXRG_CHICK Retinoic acid receptor RXR-gamma OS=Gallus gallus GN=RXRG PE=2 SV=1
Length = 467
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 69/178 (38%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + S+ G L+ + H F VL E K
Sbjct: 304 ILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMK 363
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF D + SS + + +++
Sbjct: 364 DMQMDKSELGCLRAIVLFN-------PDAKGLSSPSE--------------VESLREKVY 402
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 403 ATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 459
>sp|P51128|RXRA_XENLA Retinoic acid receptor RXR-alpha OS=Xenopus laevis GN=rxra PE=1
SV=1
Length = 488
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 66/166 (39%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 325 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 384
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF D++ L + + + A++
Sbjct: 385 DMQMDKTELGCLRAIVLFN-------PDSKG--------------LSNPLEVEALREKVY 423
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 424 ASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 469
>sp|Q6DHP9|RXRGB_DANRE Retinoic acid receptor RXR-gamma-B OS=Danio rerio GN=rxrgb PE=2
SV=1
Length = 452
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 65/166 (39%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + ++ G L+ + H F VL E K
Sbjct: 289 ILLRAGWNELLIASFSHRSITVKDGILLGTGLHVHRSSAHSAGVGSIFNRVLTELVSKMK 348
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF D + S+S + + A++
Sbjct: 349 DMQMDKTELGCLRAIVLFN-------PDAKGLSNS--------------LEVEALREKVY 387
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 388 ASLETYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 433
>sp|Q5I7G2|RXR_LYMST Retinoic acid receptor RXR OS=Lymnaea stagnalis GN=RXR PE=1 SV=1
Length = 436
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 64/172 (37%), Gaps = 40/172 (23%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I G + G L+ + H + F VL E +
Sbjct: 273 ILLRAGWNELLIAGFSHRSIMAKDGILLATGLHVHRSSAHQAGVGTIFDRVLTELVAKMR 332
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RA+ LF D + A+Q Q
Sbjct: 333 EMKMDKTELGCLRAVVLFNP---------------------------DAKGLTAVQEVEQ 365
Query: 199 I------FLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
+ L +Y T YP +P RF K+ L LP L+SI LE LFF +IG
Sbjct: 366 LREKVYASLEEYTKTRYPEEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 417
>sp|Q15466|NR0B2_HUMAN Nuclear receptor subfamily 0 group B member 2 OS=Homo sapiens
GN=NR0B2 PE=1 SV=2
Length = 257
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 64/177 (36%), Gaps = 40/177 (22%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEE-------------------V 127
LL W LF+LGLAQ + ++ E + + +EE V
Sbjct: 87 LLQGCWGPLFLLGLAQDAVTFEVAEAPVPSILKKILLEEPSSSGGSGQLPDRPQPSLAAV 146
Query: 128 IRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDV 187
Q L F L + P EY ++ LF + L+
Sbjct: 147 QWLQCCLESFWSLELSPKEYACLKGTILFNPDVPG---------------------LQAA 185
Query: 188 IAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
I +Q L + + P+ R ++ L LKSIP+ +L +LFFR IIG
Sbjct: 186 SHIGHLQQEAHWVLCEVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPIIG 242
>sp|P19793|RXRA_HUMAN Retinoic acid receptor RXR-alpha OS=Homo sapiens GN=RXRA PE=1 SV=1
Length = 462
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 71/179 (39%), Gaps = 31/179 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 299 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 358
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPES-CLRDVIAIAAIQGHT 197
+ +D E +RAI LF +P+S L + + A++
Sbjct: 359 DMQMDKTELGCLRAIVLF----------------------NPDSKGLSNPAEVEALREKV 396
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 397 YASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 454
>sp|P28705|RXRG_MOUSE Retinoic acid receptor RXR-gamma OS=Mus musculus GN=Rxrg PE=2 SV=2
Length = 463
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 68/178 (38%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + S+ G L+ + H F VL E K
Sbjct: 300 ILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMK 359
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N + + SE + ++
Sbjct: 360 DMQMDKSELGCLRAIVLF----------NPDAKGLSNPSE-----------VETLREKVY 398
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 399 ATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDSFLMEM 455
>sp|A2T929|RXRAA_DANRE Retinoic acid receptor RXR-alpha-A OS=Danio rerio GN=rxraa PE=2
SV=2
Length = 430
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 71/178 (39%), Gaps = 29/178 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV---IRFQSVLNE----FK 138
+LL W EL I + ++ G L+ + H + F VL E +
Sbjct: 267 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 326
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF D++ S+ + + A++
Sbjct: 327 DMQMDKTELGCLRAIVLFNP-------DSKGLSNPGE--------------VEALREKVY 365
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 256
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 366 ASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 422
>sp|Q0GFF6|RXRG_PIG Retinoic acid receptor RXR-gamma OS=Sus scrofa GN=RXRG PE=2 SV=2
Length = 463
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 63/166 (37%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + S+ G L+ + H F VL E K
Sbjct: 300 ILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMK 359
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N + + SE + ++
Sbjct: 360 DMQMDKSELGCLRAIVLF----------NPDAKGLSNPSE-----------VETLREKVY 398
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 399 ATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 444
>sp|Q6GN21|N2C1A_XENLA Nuclear receptor subfamily 2 group C member 1-A OS=Xenopus laevis
GN=nr2c1-a PE=2 SV=1
Length = 637
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 72/174 (41%), Gaps = 37/174 (21%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD---------------IEEEVIRFQ 131
L+ W ELF LGLAQ +++ E + + H+ + + + + Q
Sbjct: 459 LVKACWNELFSLGLAQCSQVMNV-ETILAAFVNHLQNSMQHDKLSSDKVKLVTDHIFKLQ 517
Query: 132 SVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIA 191
N L +D YEY Y++AI LF +HP L +V I
Sbjct: 518 EFCNSMVKLCVDGYEYAYLKAIALF-------------------SPDHPG--LENVSHIE 556
Query: 192 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
+Q + Y+ YP R ++ L LP L+ + + + EELFF +IG+
Sbjct: 557 KLQEKAYMEFQDYVTKTYPEDTYRLSRLLLRLPALRLMNAAITEELFFAGLIGN 610
Score = 37.7 bits (86), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 16/85 (18%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD---------------IEEEVIRFQ 47
L+ W ELF LGLAQ +++ E + + H+ + + + + Q
Sbjct: 459 LVKACWNELFSLGLAQCSQVMNV-ETILAAFVNHLQNSMQHDKLSSDKVKLVTDHIFKLQ 517
Query: 48 SVLNEFKVLNIDPYEYDYIRAITLF 72
N L +D YEY Y++AI LF
Sbjct: 518 EFCNSMVKLCVDGYEYAYLKAIALF 542
>sp|Q0VC20|RXRG_BOVIN Retinoic acid receptor RXR-gamma OS=Bos taurus GN=RXRG PE=2 SV=1
Length = 463
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 63/166 (37%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR---FQSVLNE----FK 138
+LL W EL I + S+ G L+ + H F VL E K
Sbjct: 300 ILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMK 359
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF N + + SE + ++
Sbjct: 360 DMQMDKSELGCLRAIVLF----------NPDAKGLSNPSE-----------VETLREKVY 398
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 399 ATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 444
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,186,448
Number of Sequences: 539616
Number of extensions: 3922391
Number of successful extensions: 9783
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 9541
Number of HSP's gapped (non-prelim): 158
length of query: 261
length of database: 191,569,459
effective HSP length: 115
effective length of query: 146
effective length of database: 129,513,619
effective search space: 18908988374
effective search space used: 18908988374
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)