Query psy16761
Match_columns 261
No_of_seqs 202 out of 1648
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 21:20:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16761.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16761hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ltx_A Estrogen receptor; cons 100.0 1.6E-33 5.3E-38 243.9 11.6 166 73-260 59-231 (243)
2 3p0u_A Nuclear receptor subfam 100.0 9.1E-33 3.1E-37 240.0 14.7 166 73-260 57-236 (249)
3 3k6p_A Steroid hormone recepto 100.0 7.1E-33 2.4E-37 240.5 12.0 164 73-259 71-245 (248)
4 1fcy_A RAR-gamma-1, retinoic a 100.0 7.6E-33 2.6E-37 238.5 11.3 163 73-258 67-236 (236)
5 3v3e_B Nuclear receptor subfam 100.0 1.3E-32 4.4E-37 240.1 11.0 163 73-259 75-245 (257)
6 3cjw_A COUP transcription fact 100.0 5.3E-32 1.8E-36 234.3 14.3 166 73-260 60-233 (244)
7 3f5c_B Nuclear receptor subfam 100.0 4.9E-32 1.7E-36 237.7 13.9 165 73-259 70-266 (268)
8 3plz_A FTZ-F1 related protein; 100.0 2.1E-32 7.2E-37 238.8 10.3 166 73-260 79-255 (257)
9 3kmr_A Retinoic acid receptor 100.0 2.6E-32 8.9E-37 239.3 10.8 165 73-260 91-262 (266)
10 2e2r_A Estrogen-related recept 100.0 1.2E-31 4.1E-36 232.2 13.1 165 73-260 71-242 (244)
11 1g2n_A Ultraspiracle protein; 100.0 1.4E-31 4.7E-36 234.4 13.6 166 73-260 65-255 (264)
12 3vi8_A Peroxisome proliferator 100.0 1.3E-31 4.6E-36 235.6 13.1 171 66-259 89-271 (273)
13 3ilz_A Thyroid hormone recepto 100.0 1E-31 3.4E-36 235.7 11.8 165 73-260 93-265 (267)
14 2iz2_A FTZ-F1 alpha, nuclear h 100.0 9.3E-32 3.2E-36 232.8 10.7 166 73-260 69-242 (243)
15 2nxx_A Ultraspiracle (USP, NR2 100.0 2.3E-31 7.8E-36 229.0 13.1 165 73-260 60-232 (235)
16 1ymt_A Steroidogenic factor 1; 100.0 2.9E-31 9.9E-36 230.0 11.9 166 73-260 68-244 (246)
17 1xdk_B RAR-beta, retinoic acid 100.0 2.3E-31 7.8E-36 237.4 11.4 165 73-260 94-265 (303)
18 3oll_A Estrogen receptor beta; 100.0 1.1E-31 3.9E-36 231.6 9.0 165 73-260 56-238 (240)
19 1xpc_A Estrogen receptor; nucl 100.0 2.5E-31 8.5E-36 230.6 9.8 173 73-260 58-241 (248)
20 1pdu_A DHR38, nuclear hormone 100.0 8.8E-31 3E-35 226.9 10.9 164 73-260 70-241 (244)
21 3tx7_B Nuclear receptor subfam 100.0 1.3E-30 4.6E-35 236.5 11.0 166 73-260 174-350 (352)
22 1l2j_A Estrogen receptor beta; 100.0 1E-30 3.6E-35 229.7 9.8 165 73-260 82-264 (271)
23 2ocf_A Estrogen receptor; estr 100.0 8E-31 2.7E-35 233.3 8.9 173 73-260 67-250 (298)
24 1hg4_A Ultraspiracle; nuclear 100.0 8.3E-30 2.8E-34 224.6 15.3 166 73-260 70-269 (279)
25 3b0t_A Vitamin D3 receptor; nu 100.0 1.5E-30 5.1E-35 226.4 9.6 163 73-258 79-254 (254)
26 1yye_A ER-beta, estrogen recep 100.0 8.9E-31 3.1E-35 229.8 8.1 164 73-259 54-235 (268)
27 1lbd_A RXR_LBD, retinoid X rec 100.0 2.7E-30 9.4E-35 228.1 10.4 165 73-260 106-278 (282)
28 1nq7_A Nuclear receptor ROR-be 100.0 2.5E-30 8.5E-35 223.9 9.0 161 73-258 73-244 (244)
29 2p1t_A Retinoic acid receptor 100.0 1E-29 3.6E-34 219.2 12.8 165 73-260 64-236 (240)
30 1ovl_A Orphan nuclear receptor 100.0 1.1E-29 3.7E-34 223.1 11.5 162 73-258 97-266 (271)
31 3u9q_A Peroxisome proliferator 100.0 1E-29 3.5E-34 223.1 11.3 162 73-259 96-268 (269)
32 3ipq_A Oxysterols receptor LXR 100.0 1.3E-29 4.4E-34 224.0 11.8 164 73-260 111-282 (283)
33 1n83_A Nuclear receptor ROR-al 100.0 7.4E-30 2.5E-34 224.2 9.9 164 73-260 88-261 (270)
34 2o4j_A Vitamin D3 receptor; nu 100.0 7.5E-30 2.6E-34 226.5 9.8 165 73-260 82-259 (292)
35 2r40_D Ecdysone receptor, 20-h 100.0 2.5E-29 8.6E-34 220.3 11.7 163 73-260 91-263 (266)
36 1xvp_B Orphan nuclear receptor 100.0 9.4E-30 3.2E-34 220.4 8.5 160 73-258 77-246 (246)
37 3dzy_A Retinoic acid receptor 100.0 3.6E-29 1.2E-33 235.0 12.7 165 73-260 291-463 (467)
38 1nrl_A Orphan nuclear receptor 100.0 8.4E-30 2.9E-34 228.3 7.8 163 73-260 143-314 (316)
39 2hc4_A Vitamin D receptor; alp 100.0 4.5E-29 1.5E-33 222.5 12.2 165 73-260 125-300 (302)
40 3dzy_D Peroxisome proliferator 100.0 1.1E-28 3.7E-33 229.0 13.5 167 68-259 237-417 (419)
41 3vhv_A Mineralocorticoid recep 100.0 1.2E-29 4.1E-34 221.7 6.3 165 73-259 63-242 (260)
42 1osh_A BIle acid receptor; nuc 100.0 3.4E-29 1.2E-33 215.0 8.7 164 73-259 65-231 (232)
43 3cqv_A Nuclear receptor subfam 100.0 7.7E-29 2.6E-33 208.2 10.6 149 73-243 43-198 (199)
44 3l0l_A Nuclear receptor ROR-ga 100.0 2.3E-29 7.7E-34 218.5 7.2 161 73-258 79-248 (248)
45 2nxx_E Ecdysone receptor (ECR, 100.0 1.6E-28 5.3E-33 213.1 11.9 163 73-260 75-245 (248)
46 3n00_A REV-ERBA-alpha; reverba 100.0 2.5E-28 8.4E-33 211.6 12.2 148 73-242 88-242 (245)
47 1z5x_E Ecdysone receptor ligan 100.0 2E-28 7E-33 218.8 11.8 163 73-260 139-309 (310)
48 1sqn_A PR, progesterone recept 100.0 3E-29 1E-33 219.2 5.1 163 73-259 64-243 (261)
49 1t7r_A Androgen receptor; nucl 100.0 4E-29 1.4E-33 219.3 5.7 166 73-260 72-252 (269)
50 3vhu_A Mineralocorticoid recep 99.9 6E-29 2.1E-33 220.7 5.5 165 73-259 97-276 (294)
51 3mnp_A Glucocorticoid receptor 99.9 9E-29 3.1E-33 216.2 6.1 165 73-259 65-243 (261)
52 1pzl_A Hepatocyte nuclear fact 99.9 6.8E-28 2.3E-32 207.0 11.5 166 73-261 64-237 (237)
53 3up3_A Acedaf-12; ligand bindi 99.9 2.7E-28 9.4E-33 211.0 7.3 162 73-259 64-242 (243)
54 3gyt_A Nuclear hormone recepto 99.9 3.2E-26 1.1E-30 198.0 7.4 160 73-260 64-243 (244)
55 3v3e_B Nuclear receptor subfam 99.6 7.6E-15 2.6E-19 127.6 8.5 99 2-101 88-191 (257)
56 3vi8_A Peroxisome proliferator 99.5 5.8E-14 2E-18 123.0 11.4 102 2-103 112-220 (273)
57 2e2r_A Estrogen-related recept 99.5 4.5E-14 1.5E-18 121.7 9.8 101 2-102 84-190 (244)
58 3f5c_B Nuclear receptor subfam 99.5 1.7E-13 5.6E-18 119.8 12.6 136 2-153 83-250 (268)
59 1fcy_A RAR-gamma-1, retinoic a 99.5 4.2E-14 1.4E-18 121.2 8.6 102 2-103 80-187 (236)
60 3l0l_A Nuclear receptor ROR-ga 99.5 8.3E-14 2.9E-18 120.3 10.5 102 2-103 92-198 (248)
61 1nq7_A Nuclear receptor ROR-be 99.5 1.2E-13 4.1E-18 119.0 10.9 101 2-103 86-192 (244)
62 3k6p_A Steroid hormone recepto 99.5 7.3E-14 2.5E-18 120.7 9.0 100 2-101 84-189 (248)
63 3p0u_A Nuclear receptor subfam 99.5 2.2E-13 7.7E-18 117.7 11.8 102 2-103 70-185 (249)
64 3ltx_A Estrogen receptor; cons 99.5 1.7E-13 5.7E-18 118.0 10.4 102 2-103 72-180 (243)
65 1n83_A Nuclear receptor ROR-al 99.5 2.3E-13 7.8E-18 119.0 10.7 101 2-102 101-206 (270)
66 3ilz_A Thyroid hormone recepto 99.5 2E-13 6.8E-18 119.2 9.8 102 2-103 106-213 (267)
67 2ocf_A Estrogen receptor; estr 99.5 4.2E-13 1.4E-17 119.0 11.9 100 2-101 80-194 (298)
68 3cqv_A Nuclear receptor subfam 99.4 2.1E-13 7.1E-18 113.9 8.9 102 2-103 56-163 (199)
69 3cjw_A COUP transcription fact 99.4 3.3E-13 1.1E-17 116.1 10.3 101 2-102 73-181 (244)
70 2r40_D Ecdysone receptor, 20-h 99.4 7.7E-13 2.6E-17 115.4 12.4 101 2-103 104-210 (266)
71 2iz2_A FTZ-F1 alpha, nuclear h 99.4 1.8E-13 6.3E-18 117.8 8.3 101 2-102 82-190 (243)
72 1ymt_A Steroidogenic factor 1; 99.4 2.5E-13 8.5E-18 117.0 8.9 100 2-101 81-191 (246)
73 1yye_A ER-beta, estrogen recep 99.4 6.8E-13 2.3E-17 115.9 11.6 100 2-101 67-180 (268)
74 3kmr_A Retinoic acid receptor 99.4 2.4E-13 8.3E-18 118.6 8.6 102 2-103 104-211 (266)
75 3oll_A Estrogen receptor beta; 99.4 1.4E-12 5E-17 111.8 13.3 100 2-101 69-182 (240)
76 3b0t_A Vitamin D3 receptor; nu 99.4 3.3E-13 1.1E-17 116.8 9.1 101 2-102 92-200 (254)
77 1xpc_A Estrogen receptor; nucl 99.4 3E-13 1E-17 116.7 8.7 100 2-101 71-185 (248)
78 1xdk_B RAR-beta, retinoic acid 99.4 2.3E-13 8E-18 120.9 8.1 102 2-103 107-214 (303)
79 3n00_A REV-ERBA-alpha; reverba 99.4 8.7E-13 3E-17 113.8 11.5 102 2-103 101-208 (245)
80 1g2n_A Ultraspiracle protein; 99.4 2.9E-13 1E-17 117.8 8.2 101 2-102 78-203 (264)
81 1l2j_A Estrogen receptor beta; 99.4 7.8E-13 2.7E-17 115.7 10.9 100 2-101 95-208 (271)
82 2nxx_A Ultraspiracle (USP, NR2 99.4 5.3E-13 1.8E-17 114.2 8.9 101 2-102 73-180 (235)
83 1xvp_B Orphan nuclear receptor 99.4 5.1E-13 1.7E-17 115.0 8.6 99 2-101 90-195 (246)
84 2nxx_E Ecdysone receptor (ECR, 99.4 1.7E-12 5.9E-17 112.0 11.8 100 2-102 88-193 (248)
85 1z5x_E Ecdysone receptor ligan 99.4 1.4E-12 4.8E-17 116.2 11.5 99 2-101 152-256 (310)
86 2o4j_A Vitamin D3 receptor; nu 99.4 5.8E-13 2E-17 117.7 8.9 102 2-103 95-204 (292)
87 3plz_A FTZ-F1 related protein; 99.4 7.2E-13 2.5E-17 115.0 9.1 101 2-102 92-203 (257)
88 1sqn_A PR, progesterone recept 99.4 3.8E-13 1.3E-17 117.1 7.3 100 2-101 77-185 (261)
89 1nrl_A Orphan nuclear receptor 99.4 7.7E-13 2.6E-17 118.1 9.1 102 2-103 156-262 (316)
90 1pdu_A DHR38, nuclear hormone 99.4 6.9E-13 2.4E-17 114.3 8.3 99 2-101 83-186 (244)
91 3ipq_A Oxysterols receptor LXR 99.4 9.8E-13 3.4E-17 115.7 9.4 102 2-103 124-232 (283)
92 3up3_A Acedaf-12; ligand bindi 99.4 1.8E-12 6.1E-17 111.7 10.6 99 2-101 77-191 (243)
93 3tx7_B Nuclear receptor subfam 99.4 1.8E-12 6.2E-17 117.3 11.1 101 2-102 187-298 (352)
94 3vhv_A Mineralocorticoid recep 99.4 3.6E-13 1.2E-17 117.2 5.9 100 2-101 76-184 (260)
95 3mnp_A Glucocorticoid receptor 99.4 5E-13 1.7E-17 116.3 6.8 100 2-101 78-186 (261)
96 1ovl_A Orphan nuclear receptor 99.4 1.4E-12 4.9E-17 113.8 9.5 100 2-102 110-214 (271)
97 3dzy_D Peroxisome proliferator 99.4 1.9E-12 6.4E-17 119.9 10.4 100 2-103 258-366 (419)
98 1t7r_A Androgen receptor; nucl 99.4 7.7E-13 2.6E-17 115.6 6.7 100 2-101 85-193 (269)
99 2hc4_A Vitamin D receptor; alp 99.4 2.7E-12 9.2E-17 114.0 10.3 101 2-102 138-246 (302)
100 1lbd_A RXR_LBD, retinoid X rec 99.4 2.8E-12 9.7E-17 112.6 10.2 100 2-101 119-225 (282)
101 2p1t_A Retinoic acid receptor 99.3 4.7E-12 1.6E-16 108.5 10.5 100 2-101 77-183 (240)
102 3vhu_A Mineralocorticoid recep 99.3 9.1E-13 3.1E-17 116.6 6.0 100 2-101 110-218 (294)
103 1hg4_A Ultraspiracle; nuclear 99.3 3.8E-12 1.3E-16 111.6 9.5 101 2-102 83-217 (279)
104 3u9q_A Peroxisome proliferator 99.3 2.9E-12 9.9E-17 112.0 8.2 100 2-103 109-217 (269)
105 3dzy_A Retinoic acid receptor 99.3 1.4E-11 4.8E-16 115.5 10.3 100 2-101 304-410 (467)
106 1pzl_A Hepatocyte nuclear fact 99.2 1E-10 3.5E-15 99.6 12.8 100 2-101 77-183 (237)
107 1osh_A BIle acid receptor; nuc 99.2 1E-11 3.5E-16 105.9 5.9 100 2-101 78-180 (232)
108 3gyt_A Nuclear hormone recepto 99.2 8.9E-11 3.1E-15 101.1 11.2 97 2-101 77-191 (244)
No 1
>3ltx_A Estrogen receptor; constitutive, nuclear receptor, DNA-binding, metal-binding, nucleus, transcription, transcription regulation, zinc-finger; 2.60A {Crassostrea gigas}
Probab=100.00 E-value=1.6e-33 Score=243.93 Aligned_cols=166 Identities=14% Similarity=0.059 Sum_probs=154.6
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCccccccccccc-------hhHHHHHHHHHHHHHHHHhcCCChh
Q psy16761 73 KTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESCKSRH-------VDIEEEVIRFQSVLNEFKVLNIDPY 145 (261)
Q Consensus 73 ~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~~~~~ll~~~~~~~-------~~~~~~~~~l~~~~~~l~~L~l~~~ 145 (261)
.|+|..|+.+||+.++|++|.++++++.|+++++.+.+.+++++|... .++.+.++.+.+++.+|++|++|.+
T Consensus 59 ip~F~~L~~~DQ~~LLk~~~~el~~L~~a~~s~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~l~~L~ld~~ 138 (243)
T 3ltx_A 59 VPGYTDLSLSDQVHLIECCWMELLLLNCAFRSIEHGGKSLAFAPDLVLDRSSWSTVEMTEIFEQVAAVSEQMMQNHLHKD 138 (243)
T ss_dssp STTGGGSCHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSEEEEETTEEEEHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHH
T ss_pred CcchhcCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEecCCcccchhhhcccCHHHHHHHHHHHHHHHHHhCCCHH
Confidence 599999999999999999999999999999999887777777777543 2445667788899999999999999
Q ss_pred hhhhhhHhhhcccCcccccccCCCCCCCCCCCCCCCcCcCcHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHhhccc
Q psy16761 146 EYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPR 225 (261)
Q Consensus 146 E~~lLkai~l~~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~lq~~~~~~L~~~~~~~~~~~~~Rf~~LL~~Lp~ 225 (261)
||+|||||+||||| ++|+++..+|+++|++++.+|.+||..+||++|.||++||++||.
T Consensus 139 E~~lLkaivL~~pd---------------------~~gL~~~~~v~~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~Lp~ 197 (243)
T 3ltx_A 139 ELLLLQAMVLVNAE---------------------VRRLASYNQIFNMQQSLLDAIVDTAQKYHPDNVRHVPAVLLLLTH 197 (243)
T ss_dssp HHHHHHHHHHHTSC---------------------CSCCTTHHHHHHHHHHHHHHHHHHHHHHSTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC---------------------CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHH
Confidence 99999999999999 999999999999999999999999999999999999999999999
Q ss_pred ccCCCcccchhhhcccccCCCCcHHHHHHHHHhcC
Q psy16761 226 LKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 260 (261)
Q Consensus 226 Lr~~~~~~~e~l~f~~~~g~~~~i~~ll~eml~~~ 260 (261)
||+++.++++.+++.+++| ++|+++++.||+++.
T Consensus 198 Lr~l~~~~~e~l~~~~~~g-~~~~~~Ll~Eml~~~ 231 (243)
T 3ltx_A 198 IRQAGERGIAFFQRLKSEG-VVTFCDLLKEMLDAQ 231 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHC-SSCCCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhcC-CCChhHHHHHHHhCc
Confidence 9999999999999999999 999999999999863
No 2
>3p0u_A Nuclear receptor subfamily 2 group C member 2; ligand binding domain, orphan nuclear receptor, testicular R 4, signaling protein; 3.00A {Homo sapiens}
Probab=100.00 E-value=9.1e-33 Score=239.97 Aligned_cols=166 Identities=31% Similarity=0.505 Sum_probs=151.3
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccccc--------------chhHHHHHHHHHHHHHHHH
Q psy16761 73 KTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESCKSR--------------HVDIEEEVIRFQSVLNEFK 138 (261)
Q Consensus 73 ~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~~~~~ll~~~~~~--------------~~~~~~~~~~l~~~~~~l~ 138 (261)
.|+|..|+.+||+.++|.+|.|+++++.|+++.+.+.+.++.+.+.. ...+.+.++.+.+++.+|+
T Consensus 57 iP~F~~L~~~DQ~~LLk~~w~el~~L~~a~~s~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~l~ 136 (249)
T 3p0u_A 57 IPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMA 136 (249)
T ss_dssp CTTTGGGCHHHHHHHHHTTHHHHHHHHHHHTTTSCCCCCCCCC-CC---CC---------CCCCHHHHHHHHHHHHHHHH
T ss_pred CcchhcCCHHHHHHHHHHHHHHHHHHHHHHHcccCCcchhhcccccccccccccccchhhhhhhHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999877766666544321 1345567778889999999
Q ss_pred hcCCChhhhhhhhHhhhcccCcccccccCCCCCCCCCCCCCCCcCcCcHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHH
Q psy16761 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCK 218 (261)
Q Consensus 139 ~L~l~~~E~~lLkai~l~~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~lq~~~~~~L~~~~~~~~~~~~~Rf~~ 218 (261)
+|++|.+||+|||||+||||| ++|+++..+|+++|++++.+|.+||..+||++|.||++
T Consensus 137 ~L~ld~~E~~lLkAivL~~pd---------------------~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~Rf~~ 195 (249)
T 3p0u_A 137 KLDIDGYEYAYLKAIVLFSPD---------------------HPGLTSTSQIEKFQEAAQMELQDYVQATYSEDTYRLAR 195 (249)
T ss_dssp HTTCCHHHHHHHHHHHHTCSC---------------------STTCCCSHHHHHHHHHHHHHHHHHHHHHTTTCSTHHHH
T ss_pred hhCCCHHHHHHHHHHHHhcCC---------------------CCCCccHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHH
Confidence 999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHhhcccccCCCcccchhhhcccccCCCCcHHHHHHHHHhcC
Q psy16761 219 IQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 260 (261)
Q Consensus 219 LL~~Lp~Lr~~~~~~~e~l~f~~~~g~~~~i~~ll~eml~~~ 260 (261)
||++||.||+++.+++|++||.+++| ++||++++.|||++.
T Consensus 196 LL~~L~~Lr~i~~~~~e~l~f~~~~g-~~~i~~Ll~eml~~~ 236 (249)
T 3p0u_A 196 ILVRLPALRLMSSNITEELFFTGLIG-NVSIDSIIPYILKME 236 (249)
T ss_dssp HHTTHHHHHTSCHHHHHHHHCCSSHH-HHCHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHeeeecccC-CCCHHHHHHHHHhCC
Confidence 99999999999999999999999999 999999999999864
No 3
>3k6p_A Steroid hormone receptor ERR1; estrogen related receptor alpha, DNA-binding, isopeptide BON binding, nucleus, phosphoprotein, transcription; HET: 5FB; 2.00A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xb7_A 2pjl_A* 3d24_A
Probab=100.00 E-value=7.1e-33 Score=240.52 Aligned_cols=164 Identities=20% Similarity=0.263 Sum_probs=148.7
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCccccccccccc-------hhHHHHHHHHHHHHHHHHhcCCChh
Q psy16761 73 KTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESCKSRH-------VDIEEEVIRFQSVLNEFKVLNIDPY 145 (261)
Q Consensus 73 ~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~~~~~ll~~~~~~~-------~~~~~~~~~l~~~~~~l~~L~l~~~ 145 (261)
.|+|..|+.+||+.++|.+|.++++++.|+++.+.+ +.+++++|... .++.+.++.+.+++.+|++|++|.+
T Consensus 71 ip~F~~L~~~DQ~~LLk~~~~el~lL~~a~~s~~~~-~~l~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld~~ 149 (248)
T 3k6p_A 71 IPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSLPLQ-DELAFAEDLVLDEEGARAAGLGELGAALLQLVRRLQALRLERE 149 (248)
T ss_dssp STTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHTTSS-SCEEEETTEEECHHHHHHTTTTTHHHHHHHHHHHHHTTTCCHH
T ss_pred CcccccCCHHHHHHHHHHHHHHHHHHHHHHHccCCC-CeEEeCCCcccChhhhhhccHHHHHHHHHHHHHHHHHhCCCHH
Confidence 599999999999999999999999999999999877 66777777543 2344567888999999999999999
Q ss_pred hhhhhhHhhhcccCcccccccCCCCCCCCCCCCCCCcCcCcHHHHHHHHHHHHHHHHHHHHhcCC----CCccHHHHHHh
Q psy16761 146 EYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYP----SQPTRFCKIQL 221 (261)
Q Consensus 146 E~~lLkai~l~~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~lq~~~~~~L~~~~~~~~~----~~~~Rf~~LL~ 221 (261)
||+|||||+||||| ++|+++.++|+++|++++.+|++||..+|| ++|.||++||+
T Consensus 150 E~~lLkAivL~npd---------------------~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~~~~~Rf~~LL~ 208 (248)
T 3k6p_A 150 EYVLLKALALANSD---------------------SVHIEDAEAVEQLREALHEALLEYEAGRAGPGGGAERRRAGRLLL 208 (248)
T ss_dssp HHHHHHHHHHHTCC---------------------CTTCSCHHHHHHHHHHHHHHHHHHHHTC----CCCCCH-HHHHHT
T ss_pred HHHHHHHHHHhCCC---------------------CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCccchHHHHHHHHH
Confidence 99999999999999 899999999999999999999999999999 89999999999
Q ss_pred hcccccCCCcccchhhhcccccCCCCcHHHHHHHHHhc
Q psy16761 222 ILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKN 259 (261)
Q Consensus 222 ~Lp~Lr~~~~~~~e~l~f~~~~g~~~~i~~ll~eml~~ 259 (261)
++|.||+++.+.+|+++|.+++| ++|+++++.||+++
T Consensus 209 ~Lp~Lr~l~~~~~e~l~~~k~~g-~~~i~~Ll~Eml~~ 245 (248)
T 3k6p_A 209 TLPLLRQTAGKVLAHFYGVKLEG-KVPMHKLFLEMLEA 245 (248)
T ss_dssp THHHHHHHHHHHHHHHHCC-CCC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccC-CCCHHHHHHHHHhc
Confidence 99999999999999999999999 99999999999975
No 4
>1fcy_A RAR-gamma-1, retinoic acid receptor gamma-1; isotype selectivity, retinoid ligand complexes, drug design, antiparallel alpha-helical sandwich fold; HET: 564 LMU; 1.30A {Homo sapiens} SCOP: a.123.1.1 PDB: 1fcz_A* 1fcx_A* 1fd0_A* 1exa_A* 1exx_A* 1dkf_B*
Probab=99.98 E-value=7.6e-33 Score=238.51 Aligned_cols=163 Identities=16% Similarity=0.105 Sum_probs=149.7
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCccccccccccc-------hhHHHHHHHHHHHHHHHHhcCCChh
Q psy16761 73 KTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESCKSRH-------VDIEEEVIRFQSVLNEFKVLNIDPY 145 (261)
Q Consensus 73 ~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~~~~~ll~~~~~~~-------~~~~~~~~~l~~~~~~l~~L~l~~~ 145 (261)
.|+|..|+.+||+.++|.+|.++++++.|+++.+. .+.+++++|... .++.+.++.+.+++.+|++|++|.+
T Consensus 67 lp~F~~L~~~DQ~~LLk~~~~el~~l~~a~~~~~~-~~~l~~~~g~~~~~~~~~~~g~~~~~~~i~~~~~~l~~L~ld~~ 145 (236)
T 1fcy_A 67 LPGFTGLSIADQITLLKAACLDILMLRICTRYTPE-QDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDT 145 (236)
T ss_dssp STTGGGSCHHHHHHHHHHHHHHHHHHHHHHTEETT-TTEEECTTCBEEEHHHHHHHTTGGGHHHHHHHHHHHGGGCCCHH
T ss_pred CCCcccCCHHHHHHHHHHhHHHHHHHHHHHHhccC-CCeEEeCCCceecHHHHHHcCcHHHHHHHHHHHHHHHHHcCCHH
Confidence 59999999999999999999999999999999874 355777777543 2233456778899999999999999
Q ss_pred hhhhhhHhhhcccCcccccccCCCCCCCCCCCCCCCcCcCcHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHhhccc
Q psy16761 146 EYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPR 225 (261)
Q Consensus 146 E~~lLkai~l~~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~lq~~~~~~L~~~~~~~~~~~~~Rf~~LL~~Lp~ 225 (261)
||+|||||+||||| ++|+++...|+++|+++..+|.+||..+||++|.||++||+++|.
T Consensus 146 E~~lLkaivL~~pd---------------------~~gL~~~~~v~~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~L~~ 204 (236)
T 1fcy_A 146 ETGLLSAICLICGD---------------------RMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITD 204 (236)
T ss_dssp HHHHHHHHHHSCTT---------------------STTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC---------------------CCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCchhHHHHHHHHhHH
Confidence 99999999999999 999999999999999999999999999999999999999999999
Q ss_pred ccCCCcccchhhhcccccCCCCcHHHHHHHHHh
Q psy16761 226 LKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 258 (261)
Q Consensus 226 Lr~~~~~~~e~l~f~~~~g~~~~i~~ll~eml~ 258 (261)
||+++.+.+|++||.+++| ++|+++|+.||++
T Consensus 205 Lr~l~~~~~e~l~~~~~~~-~~~~~~Ll~Eml~ 236 (236)
T 1fcy_A 205 LRGISTKGAERAITLKMEI-PGPMPPLIREMLE 236 (236)
T ss_dssp HHHHHHHHHHHHHHHHTTS-SSCCCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHccC-CCCccHHHHHHhC
Confidence 9999999999999999999 9999999999984
No 5
>3v3e_B Nuclear receptor subfamily 4 group A member 1; orphan nuclear receptor, transcription; 2.06A {Homo sapiens} PDB: 3v3q_A* 2qw4_A 1yje_A
Probab=99.98 E-value=1.3e-32 Score=240.08 Aligned_cols=163 Identities=17% Similarity=0.221 Sum_probs=146.8
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCccccccccccc------hhHHHHHHHHHHHHHHHHhcCCChhh
Q psy16761 73 KTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESCKSRH------VDIEEEVIRFQSVLNEFKVLNIDPYE 146 (261)
Q Consensus 73 ~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~~~~~ll~~~~~~~------~~~~~~~~~l~~~~~~l~~L~l~~~E 146 (261)
.|+|..|+.+||+.+||.+|.|++++++|+++.+.+ +.+++++|... .++.+.++.+.+++.+|++|++|.+|
T Consensus 75 iP~F~~L~~~DQi~LLk~~w~ElllL~~a~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld~~E 153 (257)
T 3v3e_B 75 IPGFAELSPADQDLLLESAFLELFILRLAYRSKPGE-GKLIFCSGLVLHRLQCARGFGDWIDSILAFSRSLHSLLVDVPA 153 (257)
T ss_dssp STTGGGSCHHHHHHHHHHHHHHHHHHHHHHHSBGGG-TEEECTTSBEEEHHHHHHHHTTHHHHHHHHHHHHHHTTCCHHH
T ss_pred CCCcccCCHHHHHHHHHHHHHHHHHHHHHHhccCCC-CeeEeCCCccccHHHHHhhhHHHHHHHHHHHHHHHhcCCCHHH
Confidence 699999999999999999999999999999997643 44566666533 34556778899999999999999999
Q ss_pred hhhhhHhhhcccCcccccccCCCCCCCCCCCCCCCcCcCcHHHHHHHHHHHHHHHHHHHHh--cCCCCccHHHHHHhhcc
Q psy16761 147 YDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHT--VYPSQPTRFCKIQLILP 224 (261)
Q Consensus 147 ~~lLkai~l~~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~lq~~~~~~L~~~~~~--~~~~~~~Rf~~LL~~Lp 224 (261)
|+|||||+||| | ++|++++.+|+++|++++.+|++|+.. ++|+++.||++||++||
T Consensus 154 ~a~LkAivLfs-d---------------------~~gL~~~~~Ve~lqe~~~~aL~~yi~~~~~~p~~~~rf~kLL~~Lp 211 (257)
T 3v3e_B 154 FACLSALVLIT-D---------------------RHGLQEPRRVEELQNRIASCLKEHVAAVAGEPQPASCLSRLLGKLP 211 (257)
T ss_dssp HHHHHHHHHSS-C---------------------CTTCSSHHHHHHHHHHHHHHHHHHHHHHHCSCC-CHHHHHHHTHHH
T ss_pred HHHHHHHHHhC-C---------------------CCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCcHhhHHHHHHHHHH
Confidence 99999999998 7 799999999999999999999999964 47899999999999999
Q ss_pred cccCCCcccchhhhcccccCCCCcHHHHHHHHHhc
Q psy16761 225 RLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKN 259 (261)
Q Consensus 225 ~Lr~~~~~~~e~l~f~~~~g~~~~i~~ll~eml~~ 259 (261)
.||+++.+++|++||.+++| ++|+++|+.|||.+
T Consensus 212 ~LR~l~~~~~e~l~~~k~~~-~~~~~~Ll~Emf~~ 245 (257)
T 3v3e_B 212 ELRTLCTQGLQRIFYLKLED-LVPPPPIIDKIFMD 245 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-SSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCC-CCCccHHHHHHHHh
Confidence 99999999999999999999 99999999999963
No 6
>3cjw_A COUP transcription factor 2; COUP-TFII, nuclear receptor, ligand binding domain, orphan receptor, three-layered helical sandwich, DNA-binding; 1.48A {Homo sapiens}
Probab=99.97 E-value=5.3e-32 Score=234.28 Aligned_cols=166 Identities=33% Similarity=0.542 Sum_probs=147.8
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCccccccccccc--------hhHHHHHHHHHHHHHHHHhcCCCh
Q psy16761 73 KTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESCKSRH--------VDIEEEVIRFQSVLNEFKVLNIDP 144 (261)
Q Consensus 73 ~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~~~~~ll~~~~~~~--------~~~~~~~~~l~~~~~~l~~L~l~~ 144 (261)
.|+|..|+.+||+.++|.+|.++++++.|+++.+.+.+.++.++|... ..+.+.++.+.+++.+|++|++|.
T Consensus 60 lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~~s~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ld~ 139 (244)
T 3cjw_A 60 IPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDS 139 (244)
T ss_dssp SSSGGGSCHHHHHHHHHHHHHHHHHHHHHHHTCCCSCCC-----------------CCCSHHHHHHHHHHHHHHHTTCCH
T ss_pred CCChhcCCHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccCccchhhhHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 599999999999999999999999999999999887776666655432 233345677889999999999999
Q ss_pred hhhhhhhHhhhcccCcccccccCCCCCCCCCCCCCCCcCcCcHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHhhcc
Q psy16761 145 YEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILP 224 (261)
Q Consensus 145 ~E~~lLkai~l~~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~lq~~~~~~L~~~~~~~~~~~~~Rf~~LL~~Lp 224 (261)
+||+|||||+||||| ++|+++...|+++|++++.+|.+||..+||++|.||++||++||
T Consensus 140 ~E~~lLkaivL~~pd---------------------~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~Rf~~LLl~L~ 198 (244)
T 3cjw_A 140 AEYSCLKAIVLFTSD---------------------ACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLP 198 (244)
T ss_dssp HHHHHHHHHHHSCTT---------------------STTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHTTHH
T ss_pred HHHHHHHHHHHhcCC---------------------CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhH
Confidence 999999999999999 99999999999999999999999999999999999999999999
Q ss_pred cccCCCcccchhhhcccccCCCCcHHHHHHHHHhcC
Q psy16761 225 RLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 260 (261)
Q Consensus 225 ~Lr~~~~~~~e~l~f~~~~g~~~~i~~ll~eml~~~ 260 (261)
.||+++.+..|++++.+++| .+|+++++.||+.++
T Consensus 199 ~Lr~l~~~~~e~l~~~~~~~-~~~~~~Ll~eml~~~ 233 (244)
T 3cjw_A 199 SLRTVSSSVIEQLFFVRLVG-KTPIETLIRDMLLSG 233 (244)
T ss_dssp HHHHSCHHHHHHHHTHHHHT-TCCGGGTHHHHHTCC
T ss_pred HHHhhhHHHHHHHHhhcccC-CCcHHHHHHHHHhCC
Confidence 99999999999999999999 999999999999865
No 7
>3f5c_B Nuclear receptor subfamily 0 group B member 1; transcriptional corepressor, regulatory complex, DNA-binding, lipid-binding, metal-binding; 3.00A {Mus musculus}
Probab=99.97 E-value=4.9e-32 Score=237.74 Aligned_cols=165 Identities=27% Similarity=0.332 Sum_probs=146.5
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCcccccc--------cccc------------------------c
Q psy16761 73 KTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES--------CKSR------------------------H 120 (261)
Q Consensus 73 ~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~~~~~ll~~--------~~~~------------------------~ 120 (261)
.|+|..|+.+||+.+||.+|.|++++++||++.+.+...+..+ ++.. .
T Consensus 70 iP~F~~L~~~DQv~LLk~~w~ElllL~~A~rs~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 149 (268)
T 3f5c_B 70 LPCFQILPLDQQLVLVRSCWAPLLMLELAQDHLHFEMMEIPETNTTQEMLTTRRQETEGPEPAEPQATEQPQMVSAEAGH 149 (268)
T ss_dssp CHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCC---------------------------------------C
T ss_pred CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHhccccccccchhhhhhhhhcccccccccccccccccccccccccchhcc
Confidence 6999999999999999999999999999999987665432111 0000 0
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCChhhhhhhhHhhhcccCcccccccCCCCCCCCCCCCCCCcCcCcHHHHHHHHHHHHHH
Q psy16761 121 VDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIF 200 (261)
Q Consensus 121 ~~~~~~~~~l~~~~~~l~~L~l~~~E~~lLkai~l~~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~lq~~~~~~ 200 (261)
+...+.++.+.+++.+|++|++|.+||+|||||+||||| ++|+++..+|+++|++++.+
T Consensus 150 ~~~~~~i~~l~~~~~~l~~L~ld~~E~~lLkAivL~npd---------------------~~gL~~~~~ve~lq~~~~~a 208 (268)
T 3f5c_B 150 LLPAAAVQAIKSFFFKCWSLNIDTKEYAYLKGTVLFNPD---------------------LPGLQCVKYIEGLQWRTQQI 208 (268)
T ss_dssp CCCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCTT---------------------STTCSCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC---------------------CCCCchHHHHHHHHHHHHHH
Confidence 112345778899999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHhcCCCCccHHHHHHhhcccccCCCcccchhhhcccccCCCCcHHHHHHHHHhc
Q psy16761 201 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKN 259 (261)
Q Consensus 201 L~~~~~~~~~~~~~Rf~~LL~~Lp~Lr~~~~~~~e~l~f~~~~g~~~~i~~ll~eml~~ 259 (261)
|.+||..+||+++.||++||++||.||+++.+.+|++||.+++| ++||++++.|||.+
T Consensus 209 L~~y~~~~~p~~~~Rf~~LL~~Lp~LR~i~~~~~e~l~~~k~~g-~~~i~~Ll~Eml~a 266 (268)
T 3f5c_B 209 LTEHIRMMQREYQIRSAELNSALFLLRFINSDVVTELFFRPIIG-AVSMDDMMLEMLCA 266 (268)
T ss_dssp HHHHHHHHSSCSSHHHHHHHHHHHHHTTSCSSHHHHHHTHHHHC-SCCHHHHHHHHTTS
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC-CCCchHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999 99999999999986
No 8
>3plz_A FTZ-F1 related protein; alpha helical sandwhich, family five, TRAN factor, transcription-receptor-agonist comple; HET: 470; 1.75A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yok_A* 1yuc_A* 4dor_A* 1zdu_A* 4dos_A* 1zh7_A 1pk5_A 3f5c_A
Probab=99.97 E-value=2.1e-32 Score=238.76 Aligned_cols=166 Identities=19% Similarity=0.303 Sum_probs=151.2
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCC-Cccccccccccc--------hhH--HHHHHHHHHHHHHHHhcC
Q psy16761 73 KTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLD-LGELVESCKSRH--------VDI--EEEVIRFQSVLNEFKVLN 141 (261)
Q Consensus 73 ~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~~-~~~ll~~~~~~~--------~~~--~~~~~~l~~~~~~l~~L~ 141 (261)
.|+|..|+.+||+.++|.+|.++++++.|++++..+ .+.+++++|..+ .+. .+.++.+.+++.+|++|+
T Consensus 79 ip~F~~L~~~DQ~~LLk~~~~el~lL~~a~rs~~~~~~~~l~~~~g~~~~~~~~~~~~g~~~~~~~~~l~~~~~~l~~L~ 158 (257)
T 3plz_A 79 SIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQ 158 (257)
T ss_dssp STTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCBTTEEECTTSCEEEHHHHHTTSCHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcChhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCccChHHHhhhcCCcHHHHHHHHHHHHHHHHHHC
Confidence 699999999999999999999999999999887543 356666766532 112 556788999999999999
Q ss_pred CChhhhhhhhHhhhcccCcccccccCCCCCCCCCCCCCCCcCcCcHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHh
Q psy16761 142 IDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQL 221 (261)
Q Consensus 142 l~~~E~~lLkai~l~~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~lq~~~~~~L~~~~~~~~~~~~~Rf~~LL~ 221 (261)
+|.+||+|||||+||||| ++|+++..+|+++|++++.+|.+||..+||++|.||++||+
T Consensus 159 ld~~E~~lLkAivL~npd---------------------~~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~ 217 (257)
T 3plz_A 159 FDQREFVCLKFLVLFSLD---------------------VKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLL 217 (257)
T ss_dssp CCHHHHHHHHHHHHSCTT---------------------CCSCTTHHHHHHHHHHHHHHHHHHHHHHCTTSTTHHHHHHT
T ss_pred CCHHHHHHHHHHHHhcCC---------------------CCCCccHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 999999999999999999 99999999999999999999999999999999999999999
Q ss_pred hcccccCCCcccchhhhcccccCCCCcHHHHHHHHHhcC
Q psy16761 222 ILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 260 (261)
Q Consensus 222 ~Lp~Lr~~~~~~~e~l~f~~~~g~~~~i~~ll~eml~~~ 260 (261)
+||.||+++.+.+|++||.+++| ++|+++++.||+++.
T Consensus 218 ~Lp~Lr~l~~~~~e~l~~~~~~g-~~~i~~Ll~Eml~~k 255 (257)
T 3plz_A 218 RLPEIRAISMQAEEYLYYKHLNG-DVPYNNLLIEMLHAK 255 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-CSCCCSHHHHHHTC-
T ss_pred HhHHHHHHHHHHHHHHhhhhhcC-CCCHHHHHHHHHhcc
Confidence 99999999999999999999999 999999999999863
No 9
>3kmr_A Retinoic acid receptor alpha; nuclear receptor transcription factor ligand binding domain, binding, metal-binding, nucleus, phosphoprotein; HET: EQN; 1.80A {Homo sapiens} PDB: 3kmz_B* 3a9e_B* 4dm6_A* 1xap_A* 4dm8_A* 2lbd_A* 3lbd_A* 4lbd_A*
Probab=99.97 E-value=2.6e-32 Score=239.30 Aligned_cols=165 Identities=18% Similarity=0.148 Sum_probs=149.5
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCccccccccccc-------hhHHHHHHHHHHHHHHHHhcCCChh
Q psy16761 73 KTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESCKSRH-------VDIEEEVIRFQSVLNEFKVLNIDPY 145 (261)
Q Consensus 73 ~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~~~~~ll~~~~~~~-------~~~~~~~~~l~~~~~~l~~L~l~~~ 145 (261)
.|+|..|+.+||+.++|.+|.++++++.|+++.+.+ +.+++++|..+ .++.+..+.+.+++.+|++|++|.+
T Consensus 91 lP~F~~L~~~DQi~LLk~~~~el~lL~~a~~s~~~~-~~l~~~~g~~~~~~~~~~~g~~~~~~~i~~~~~~l~~L~ld~~ 169 (266)
T 3kmr_A 91 LPGFTTLTIADQITLLKAACLDILILRICTRYTPEQ-DTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDA 169 (266)
T ss_dssp STTGGGSCHHHHHHHHHHHHHHHHHHHHHHTEETTT-TEEECTTSBEEEHHHHHHHTTGGGHHHHHHHHHHHGGGCCCHH
T ss_pred CcChhhCCHHHHHHHHHHHHHHHHHHHHHHHhccCC-CeEEecCCcccchHHHhhcchHHHHHHHHHHHHHHHHhCCCHH
Confidence 699999999999999999999999999999987643 55667776543 2233456677899999999999999
Q ss_pred hhhhhhHhhhcccCcccccccCCCCCCCCCCCCCCCcCcCcHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHhhccc
Q psy16761 146 EYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPR 225 (261)
Q Consensus 146 E~~lLkai~l~~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~lq~~~~~~L~~~~~~~~~~~~~Rf~~LL~~Lp~ 225 (261)
||+|||||+||||| ++|+++..+|+++|++++.+|++||..+||++|.||++||++||.
T Consensus 170 E~~lLkAIvL~~pd---------------------~~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~Lp~ 228 (266)
T 3kmr_A 170 ETGLLSAICLICGD---------------------RQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITD 228 (266)
T ss_dssp HHHHHHHHHHSCTT---------------------STTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC---------------------CCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcccHHHHHHHHhHH
Confidence 99999999999999 999999999999999999999999999999999999999999999
Q ss_pred ccCCCcccchhhhcccccCCCCcHHHHHHHHHhcC
Q psy16761 226 LKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 260 (261)
Q Consensus 226 Lr~~~~~~~e~l~f~~~~g~~~~i~~ll~eml~~~ 260 (261)
||+++.+.+|.+||.+++| ++|+++|+.|||+++
T Consensus 229 Lr~i~~~~~e~l~~~k~~~-~~~~~~Ll~Eml~~~ 262 (266)
T 3kmr_A 229 LRSISAKGAERVITLKMEI-PGSMPPLIQEMLENS 262 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHS-SSCCCHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHhcC-CCCcchHHHHHhcCC
Confidence 9999999999999999999 999999999999874
No 10
>2e2r_A Estrogen-related receptor gamma; ERR gamma, BPA, nuclear receptor, transcription; HET: 2OH; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 2zas_A* 2zbs_A 2zkc_A* 2p7g_A* 1vjb_A* 1tfc_A 2p7a_A* 2p7z_A* 2gpu_A* 1kv6_A 2gp7_A 2gpp_A* 2gpo_A* 2gpv_A* 1s9q_A* 1s9p_A* 2ewp_A*
Probab=99.97 E-value=1.2e-31 Score=232.21 Aligned_cols=165 Identities=19% Similarity=0.270 Sum_probs=151.6
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCccccccccccc-------hhHHHHHHHHHHHHHHHHhcCCChh
Q psy16761 73 KTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESCKSRH-------VDIEEEVIRFQSVLNEFKVLNIDPY 145 (261)
Q Consensus 73 ~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~~~~~ll~~~~~~~-------~~~~~~~~~l~~~~~~l~~L~l~~~ 145 (261)
.|+|..|+.+||+.++|.+|.++++++.|+++.+.+.. +++++|... .++.+.++.+.+++.+|++|++|.+
T Consensus 71 ip~F~~L~~~DQ~~LLk~~~~el~~L~~a~rs~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld~~ 149 (244)
T 2e2r_A 71 IPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDE-LVYADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKE 149 (244)
T ss_dssp STTGGGSCHHHHHHHHHHHHHHHHHHHHHHHTTTSSSC-EEEETTEEECHHHHHHTTCHHHHHHHHHHHHHHHHHTCCHH
T ss_pred CCChhhCCHHHHHHHHHHhHHHHHHHHHHHHhcccCCe-EEecCCEeecHHHhhhccHHHHHHHHHHHHHHHHHHcCCHH
Confidence 69999999999999999999999999999999887544 555555422 3445667788899999999999999
Q ss_pred hhhhhhHhhhcccCcccccccCCCCCCCCCCCCCCCcCcCcHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHhhccc
Q psy16761 146 EYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPR 225 (261)
Q Consensus 146 E~~lLkai~l~~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~lq~~~~~~L~~~~~~~~~~~~~Rf~~LL~~Lp~ 225 (261)
||+|||||+||||| ++|+++.++|+++|+++..+|.+||..+||++|.||++||++||.
T Consensus 150 E~~lLkAivL~~pd---------------------~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~Rf~~LL~~L~~ 208 (244)
T 2e2r_A 150 EFVTLKAIALANSD---------------------SMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMTLPL 208 (244)
T ss_dssp HHHHHHHHHHHTCC---------------------CTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHTTHHH
T ss_pred HHHHHHHHHHhccC---------------------CCCCcCHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 99999999999999 899999999999999999999999999999999999999999999
Q ss_pred ccCCCcccchhhhcccccCCCCcHHHHHHHHHhcC
Q psy16761 226 LKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 260 (261)
Q Consensus 226 Lr~~~~~~~e~l~f~~~~g~~~~i~~ll~eml~~~ 260 (261)
||+++.+.+|+++|.+++| ++|+++|+.||+++.
T Consensus 209 Lr~~~~~~~e~l~~~~~~~-~~~~~~Ll~Eml~~~ 242 (244)
T 2e2r_A 209 LRQTSTKAVQHFYNIKLEG-KVPMHKLFLEMLEAK 242 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CSCCCHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHhhcCC-CCChHHHHHHHHhCc
Confidence 9999999999999999999 999999999999874
No 11
>1g2n_A Ultraspiracle protein; antiparallel alpha-helical sandwich, structural proteomics in europe, spine, structural genomics, gene regulation; HET: EPH; 1.65A {Heliothis virescens} SCOP: a.123.1.1 PDB: 2r40_A* 1r20_A* 1r1k_A* 3ixp_A*
Probab=99.97 E-value=1.4e-31 Score=234.37 Aligned_cols=166 Identities=21% Similarity=0.318 Sum_probs=148.8
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCC---CCcc--------------ccccccccc-------hhHHHHH-
Q psy16761 73 KTAFTSRRELAGHLLLAESWRELFILGLAQYLPSL---DLGE--------------LVESCKSRH-------VDIEEEV- 127 (261)
Q Consensus 73 ~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~---~~~~--------------ll~~~~~~~-------~~~~~~~- 127 (261)
.|+|..|+.+||+.++|++|.++++++.|+++.+. +.+. +++++|... .++.+.+
T Consensus 65 lp~F~~L~~~DQ~~LLk~~w~el~lL~~a~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~ 144 (264)
T 1g2n_A 65 IPHFSQLEMEDQILLIKGSWNELLLFAIAWRSMEFLTEERDGVDGTGNRTTSPPQLMCLMPGMTLHRNSALQAGVGQIFD 144 (264)
T ss_dssp STTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHGGGSCCC----------CCCCCCEEEEETTEEEEHHHHHHHTCHHHHH
T ss_pred CCChhcCCHHHHHHHHHHhhHHHHHHHHHHHccccccccccccccccccccccccceeecCCcccCchhhhhccHHHHHH
Confidence 59999999999999999999999999999998765 1333 666666533 2333444
Q ss_pred HHHHHHHHHHHhcCCChhhhhhhhHhhhcccCcccccccCCCCCCCCCCCCCCCcCcCcHHHHHHHHHHHHHHHHHHHHh
Q psy16761 128 IRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHT 207 (261)
Q Consensus 128 ~~l~~~~~~l~~L~l~~~E~~lLkai~l~~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~lq~~~~~~L~~~~~~ 207 (261)
+.+.+++.+|++|++|.+||+|||||+||||| ++|+++...|+++|++++.+|.+||..
T Consensus 145 ~~~~~~~~~~~~L~ld~~E~~lLkAivL~npd---------------------~~gL~~~~~ve~lq~~~~~aL~~y~~~ 203 (264)
T 1g2n_A 145 RVLSELSLKMRTLRVDQAEYVALKAIILLNPD---------------------VKGLKNRQEVEVLREKMFLCLDEYCRR 203 (264)
T ss_dssp HHHHHTHHHHHHTTCCHHHHHHHHHHHHSCTT---------------------CTTCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC---------------------CCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999 899999999999999999999999999
Q ss_pred cCCCCccHHHHHHhhcccccCCCcccchhhhcccccCCCCcHHHHHHHHHhcC
Q psy16761 208 VYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 260 (261)
Q Consensus 208 ~~~~~~~Rf~~LL~~Lp~Lr~~~~~~~e~l~f~~~~g~~~~i~~ll~eml~~~ 260 (261)
+||+++.||++||++||.||+++.+.+|+++|.+++| ++|+++|+.||+.+.
T Consensus 204 ~~~~~~~Rf~~LL~~L~~Lr~l~~~~~e~l~~~~~~~-~~~~~~Ll~Eml~~~ 255 (264)
T 1g2n_A 204 SRSSEEGRFAALLLRLPALRSISLKSFEHLFFFHLVA-DTSIAGYIRDALRNH 255 (264)
T ss_dssp HSTTCTTHHHHHHTHHHHHHHHHHHHHHHHHHTTCBC-TTTHHHHHHHHHTCC
T ss_pred hCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCChHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999 999999999999864
No 12
>3vi8_A Peroxisome proliferator-activated receptor alpha; nuclear receptor, protein-ligand complex, PPAR, transcriptio; HET: 13M; 1.75A {Homo sapiens} PDB: 2znn_A* 3et1_A* 3kdu_A* 3kdt_A* 2rew_A* 1i7g_A* 3g8i_A* 1kkq_A* 1k7l_A* 3sp6_A* 2npa_A* 2p54_A* 3fei_A* 3tkm_A* 2znq_A* 2znp_A* 3sp9_A* 3gwx_A* 3dy6_A* 1gwx_A* ...
Probab=99.97 E-value=1.3e-31 Score=235.56 Aligned_cols=171 Identities=13% Similarity=0.077 Sum_probs=150.5
Q ss_pred HHHHHhh---ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccccc--------chhHHHHHHHHHHHH
Q psy16761 66 IRAITLF---KTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESCKSR--------HVDIEEEVIRFQSVL 134 (261)
Q Consensus 66 Lkaivlf---~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~~~~~ll~~~~~~--------~~~~~~~~~~l~~~~ 134 (261)
++.+|-| .|+|..|+.+||+.+||.+|.|+++++.|+++.. +...+.++.+.. ...+.+.++.+.+++
T Consensus 89 v~~iVewAK~iPgF~~L~~~DQi~LLk~~w~ElllL~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 167 (273)
T 3vi8_A 89 VTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNK-DGMLVAYGNGFITREFLKSLRKPFCDIMEPKFDFA 167 (273)
T ss_dssp HHHHHHHGGGSTTTTTSCHHHHHHHHHHHHHHHHHHHHGGGEET-TEEEETTTTEEEEHHHHHHSCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHccCcCcccCCHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCeeeeCCCccchHHHHHhhhhHHHHHHHHHHHH
Confidence 3445555 7999999999999999999999999999988754 333334443321 145667788899999
Q ss_pred HHHHhcCCChhhhhhhhHhhhcccCcccccccCCCCCCCCCCCCCCCcCcCcHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q psy16761 135 NEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPT 214 (261)
Q Consensus 135 ~~l~~L~l~~~E~~lLkai~l~~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~lq~~~~~~L~~~~~~~~~~~~~ 214 (261)
.+|++|++|.+||+|||||+||||| ++|++++.+|+++|++++.+|++|+..+||+++.
T Consensus 168 ~~~~~L~ld~~E~alLkAivLf~pd---------------------~~gL~~~~~Ve~lqe~~~~aL~~yi~~~~p~~~~ 226 (273)
T 3vi8_A 168 MKFNALELDDSDISLFVAAIICCGD---------------------RPGLLNVGHIEKMQEGIVHVLRLHLQSNHPDDIF 226 (273)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHSCTT---------------------CTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhCCC---------------------CCCcccHHHHHHHHHHHHHHHHHHHHHhCCChhh
Confidence 9999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccCCCcccchhhh-cccccCCCCcHHHHHHHHHhc
Q psy16761 215 RFCKIQLILPRLKSIPSLVLEELF-FRNIIGHNTTIKKTIWHMYKN 259 (261)
Q Consensus 215 Rf~~LL~~Lp~Lr~~~~~~~e~l~-f~~~~g~~~~i~~ll~eml~~ 259 (261)
||++||++||.||+++.++.+.++ |+...| ++|+++|+.||+++
T Consensus 227 rF~kLL~~Lp~LR~l~~~~~e~l~~~k~~~~-~~~~~~Ll~Emf~d 271 (273)
T 3vi8_A 227 LFPKLLQKMADLRQLVTEHAQLVQIIKKTES-DAALHPLLQEIYRD 271 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-TCCCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-CCCccHHHHHHHHh
Confidence 999999999999999999999998 566789 99999999999974
No 13
>3ilz_A Thyroid hormone receptor, alpha isoform 1 variant; nuclear receptor, signaling protein; HET: B72; 1.85A {Homo sapiens} SCOP: a.123.1.1 PDB: 3jzb_A* 3hzf_A* 2h79_A* 2h77_A* 1nav_A* 3uvv_A* 1xzx_X* 1y0x_X* 1nq1_A* 3jzc_A* 1nuo_A* 3imy_A* 1nq0_A* 1bsx_A* 1r6g_A* 1nq2_A* 3gws_X* 1n46_A* 2h6w_X* 2j4a_A* ...
Probab=99.97 E-value=1e-31 Score=235.69 Aligned_cols=165 Identities=15% Similarity=0.135 Sum_probs=150.0
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCccccccccccc-------hhHHHHHHHHHHHHHHHHhcCCChh
Q psy16761 73 KTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESCKSRH-------VDIEEEVIRFQSVLNEFKVLNIDPY 145 (261)
Q Consensus 73 ~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~~~~~ll~~~~~~~-------~~~~~~~~~l~~~~~~l~~L~l~~~ 145 (261)
.|+|..|+.+||+.++|.+|.++++++.|+++.+.+ +.+++++|..+ .++...++.+.+++.+|++|++|.+
T Consensus 93 lP~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~-~~l~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~l~~L~ld~~ 171 (267)
T 3ilz_A 93 LPMFSELPXEDQIILLKGCCMEIMSLRAAVRYDPES-DTLTLSGEMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDT 171 (267)
T ss_dssp SHHHHTSCHHHHHHHHHHHHHHHHHHHHHTTCBTTT-TBEEETTTEEECHHHHHHTTTTHHHHHHHHHHHHHGGGCCCHH
T ss_pred CcchhhCCHhHHHHHHHHHHHHHHHHHHHHHhcCCC-CEEEecCCeeecHHHHhccCHHHHHHHHHHHHHHHHHhcCCHH
Confidence 599999999999999999999999999999987643 55666666532 2334566788899999999999999
Q ss_pred hhhhhhHhhhcccCcccccccCCCCCCCCCCCCCCCcCcCcHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHhhccc
Q psy16761 146 EYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPR 225 (261)
Q Consensus 146 E~~lLkai~l~~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~lq~~~~~~L~~~~~~~~~~~~~Rf~~LL~~Lp~ 225 (261)
||+|||||+||||| ++|+++..+|+++|++++.+|.+||..+||++|.||++||++||.
T Consensus 172 E~~lLkAivL~~pd---------------------~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~Rf~~LL~~Lp~ 230 (267)
T 3ilz_A 172 EVALLQAVLLMSTD---------------------RSGLLXVDKIEKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKVTD 230 (267)
T ss_dssp HHHHHHHHHHSCCC---------------------SSSCSCHHHHHHHHHHHHHHHHHHHHHHTCSSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC---------------------CCCCchHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhHH
Confidence 99999999999999 999999999999999999999999999999999999999999999
Q ss_pred ccCCCcccchhhhcccccCCCCcH-HHHHHHHHhcC
Q psy16761 226 LKSIPSLVLEELFFRNIIGHNTTI-KKTIWHMYKNA 260 (261)
Q Consensus 226 Lr~~~~~~~e~l~f~~~~g~~~~i-~~ll~eml~~~ 260 (261)
||+++.+++|++||.+..| ++|+ ++|+.||+.++
T Consensus 231 Lr~l~~~~~e~l~~~k~~~-~~~~~~~Ll~Em~~~~ 265 (267)
T 3ilz_A 231 LRMIGAXHASRFLHMKVEX-PTELFPPLFLEVFEDQ 265 (267)
T ss_dssp HHHHHHHHHHHHHC-CCSS-CGGGSCHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHHHhcC-CccCCCcHHHHHhcCC
Confidence 9999999999999999999 9998 99999999875
No 14
>2iz2_A FTZ-F1 alpha, nuclear hormone receptor FTZ-F1; nuclear protein, phosphorylation, PAIR-RULE protein; 2.8A {Drosophila melanogaster} PDB: 2xhs_A
Probab=99.97 E-value=9.3e-32 Score=232.81 Aligned_cols=166 Identities=16% Similarity=0.225 Sum_probs=149.1
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCC-Cccccccccccc-------hhHHHHHHHHHHHHHHHHhcCCCh
Q psy16761 73 KTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLD-LGELVESCKSRH-------VDIEEEVIRFQSVLNEFKVLNIDP 144 (261)
Q Consensus 73 ~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~~-~~~ll~~~~~~~-------~~~~~~~~~l~~~~~~l~~L~l~~ 144 (261)
.|+|..|+.+||+.++|++|.++++++.|+++...+ .+.+++++|... .++.+.++.+.+++.+|++|++|.
T Consensus 69 lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~rs~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ld~ 148 (243)
T 2iz2_A 69 TVFFKDLKVDDQMKLLQHSWSDMLVLDHLHHRIHNGLPDETQLNNGQVFNLMSLGLLGVPQLGDYFNELQNKLQDLKFDM 148 (243)
T ss_dssp CTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSCCBCSSSCBCCCCTTTTSSTTSSHHHHHHHHHHHHHTTCCH
T ss_pred ChhHhhCChHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceeecCCcccChhhHhhcchHHHHHHHHHHHHHHHHHCCCH
Confidence 699999999999999999999999999999987532 344555555422 123344567889999999999999
Q ss_pred hhhhhhhHhhhcccCcccccccCCCCCCCCCCCCCCCcCcCcHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHhhcc
Q psy16761 145 YEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILP 224 (261)
Q Consensus 145 ~E~~lLkai~l~~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~lq~~~~~~L~~~~~~~~~~~~~Rf~~LL~~Lp 224 (261)
+||+|||||+||||| ++|+++.++|+++|+++..+|.+||..+||++|.||++||+++|
T Consensus 149 ~E~~lLkAivL~npd---------------------~~gL~~~~~v~~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~L~ 207 (243)
T 2iz2_A 149 GDYVCMKFLILLNPS---------------------VRGIVNRKTVSEGHDNVQAALLDYTLTCYPSVNDKFRGLVNILP 207 (243)
T ss_dssp HHHHHHHHHHHCCTT---------------------STTCSCHHHHHHHHHHHHHHHHHHHHHHCTTSTTHHHHHHTHHH
T ss_pred HHHHHHHHHHHcCCC---------------------CCCcccHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHH
Confidence 999999999999999 99999999999999999999999999999999999999999999
Q ss_pred cccCCCcccchhhhcccccCCCCcHHHHHHHHHhcC
Q psy16761 225 RLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 260 (261)
Q Consensus 225 ~Lr~~~~~~~e~l~f~~~~g~~~~i~~ll~eml~~~ 260 (261)
.||+++.+.+|+++|.+++| ++|+++++.||+++.
T Consensus 208 ~Lr~l~~~~~e~l~~~~~~g-~~~~~~Ll~Eml~~~ 242 (243)
T 2iz2_A 208 EIHAMAVRGEDHLYTKHCAG-SAPTQTLLMEMLHAK 242 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CSCSSSHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhccC-CCcHHHHHHHHHhcC
Confidence 99999999999999999999 999999999999874
No 15
>2nxx_A Ultraspiracle (USP, NR2B4); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}
Probab=99.97 E-value=2.3e-31 Score=229.05 Aligned_cols=165 Identities=26% Similarity=0.393 Sum_probs=147.7
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCccccccccccc-------hhHHHHH-HHHHHHHHHHHhcCCCh
Q psy16761 73 KTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESCKSRH-------VDIEEEV-IRFQSVLNEFKVLNIDP 144 (261)
Q Consensus 73 ~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~~~~~ll~~~~~~~-------~~~~~~~-~~l~~~~~~l~~L~l~~ 144 (261)
.|+|..|+.+||+.++|++|.++++++.|+++++.+ +.+++++|... .++.+.+ +.+.+++.+|++|++|.
T Consensus 60 ip~F~~L~~~DQ~~LLk~~~~el~~L~~a~rs~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ld~ 138 (235)
T 2nxx_A 60 VPHFTSLPLTDQVQLLRAGWNELLIAAFSHRSMQAQ-DAIVLATGLTVNKSTAHAVGVGNIYDRVLSELVNKMKEMKMDK 138 (235)
T ss_dssp STTSTTSCHHHHHHHHHHHHHHHHHHHHHHTTSSSS-SSEECSSSCEECSSSCSSSSCSSSHHHHHHHTHHHHHHHTCCH
T ss_pred CCChhhCCHHHHHHHHHHhHHHHHHHHHHHhcccCC-CceEecCCcccccchhhhhchHHHHHHHHHHHHHHHHHHcCCH
Confidence 599999999999999999999999999999998864 44666666432 1222222 33578999999999999
Q ss_pred hhhhhhhHhhhcccCcccccccCCCCCCCCCCCCCCCcCcCcHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHhhcc
Q psy16761 145 YEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILP 224 (261)
Q Consensus 145 ~E~~lLkai~l~~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~lq~~~~~~L~~~~~~~~~~~~~Rf~~LL~~Lp 224 (261)
+||+|||||+||||| ++|+++...|+++|++++.+|.+||..+||++|.||++||+++|
T Consensus 139 ~E~~lLkaivL~~pd---------------------~~gL~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~Rf~~LL~~L~ 197 (235)
T 2nxx_A 139 TELGCLRAIILYNPD---------------------VRGIKSVQEVEMLREKIYGVLEEYTRTTHPNEPGRFAKLLLRLP 197 (235)
T ss_dssp HHHHHHHHHHHCCTT---------------------STTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHTHHH
T ss_pred HHHHHHHHHHHhcCC---------------------CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhH
Confidence 999999999999999 89999999999999999999999999999999999999999999
Q ss_pred cccCCCcccchhhhcccccCCCCcHHHHHHHHHhcC
Q psy16761 225 RLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 260 (261)
Q Consensus 225 ~Lr~~~~~~~e~l~f~~~~g~~~~i~~ll~eml~~~ 260 (261)
.||+++.+.+|+++|.+++| ++|+++++.||+.++
T Consensus 198 ~Lr~~~~~~~e~l~~~~~~g-~~~~~~Ll~eml~~~ 232 (235)
T 2nxx_A 198 ALRSIGLKCLEHLFFFKLIG-DVPIDTFLMEMLEGT 232 (235)
T ss_dssp HHHHHHHTCCSCTTTTSSSS-CCCHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHhhcccC-CCcHHHHHHHHHhCC
Confidence 99999999999999999999 999999999999875
No 16
>1ymt_A Steroidogenic factor 1; SF-1, ligand-binding domain, ligand, phosphatidyl glycerol, CO-repressor peptide, transcription; HET: DR9; 1.20A {Mus musculus} PDB: 3f7d_A* 1yp0_A* 1yow_A* 1zdt_A*
Probab=99.97 E-value=2.9e-31 Score=229.97 Aligned_cols=166 Identities=17% Similarity=0.250 Sum_probs=150.5
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCC-CCccccccccccc--h------h--HHHHHHHHHHHHHHHHhcC
Q psy16761 73 KTAFTSRRELAGHLLLAESWRELFILGLAQYLPSL-DLGELVESCKSRH--V------D--IEEEVIRFQSVLNEFKVLN 141 (261)
Q Consensus 73 ~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~-~~~~ll~~~~~~~--~------~--~~~~~~~l~~~~~~l~~L~ 141 (261)
.|+|..|+.+||+.++|.+|.++++++.|+++... +.+.+++++|..+ + + ..+.++.+.+++.+|++|+
T Consensus 68 lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~rs~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 147 (246)
T 1ymt_A 68 CMVFKELEVADQMTLLQNSWSELLVLDHIYRQVQYGKEDSILLVTGQEVELSTVAVQAGSLLHSLVLRAQELVLQLHALQ 147 (246)
T ss_dssp STTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTEEECTTSCEEEHHHHHHHCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred ChhHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeeEecCCCccchhhhhhhcchhHHHHHHHHHHHHHHHHHHC
Confidence 69999999999999999999999999999998764 3455666666532 1 1 2356778899999999999
Q ss_pred CChhhhhhhhHhhhcccCcccccccCCCCCCCCCCCCCCCcCcCcHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHh
Q psy16761 142 IDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQL 221 (261)
Q Consensus 142 l~~~E~~lLkai~l~~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~lq~~~~~~L~~~~~~~~~~~~~Rf~~LL~ 221 (261)
+|.+||+|||||+||||| ++|+++...|+++|+++..+|.+||..+||+++.||++||+
T Consensus 148 ld~~E~~lLkAivL~~pd---------------------~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~Rf~~LL~ 206 (246)
T 1ymt_A 148 LDRQEFVCLKFLILFSLD---------------------VKFLNNHSLVKDAQEKANAALLDYTLSHYPHSGDKFQQLLL 206 (246)
T ss_dssp CCHHHHHHHHHHHHTCSC---------------------GGGSSCHHHHHHHHHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCc---------------------ccccccHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHH
Confidence 999999999999999999 99999999999999999999999999999999999999999
Q ss_pred hcccccCCCcccchhhhcccccCCCCcHHHHHHHHHhcC
Q psy16761 222 ILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 260 (261)
Q Consensus 222 ~Lp~Lr~~~~~~~e~l~f~~~~g~~~~i~~ll~eml~~~ 260 (261)
+||.||+++.+.+++++|.+++| ++|+++|+.||+++.
T Consensus 207 ~L~~Lr~~~~~~~e~l~~~~~~~-~~~~~~Ll~Eml~~~ 244 (246)
T 1ymt_A 207 SLVEVRALSMQAKEYLYHKHLGN-EMPRNNLLIEMLQAK 244 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-CSCTTCHHHHHHHC-
T ss_pred HhHHHHHHHHHHHHHHHhhcccC-CCcHHHHHHHHHhCc
Confidence 99999999999999999999999 999999999999864
No 17
>1xdk_B RAR-beta, retinoic acid receptor, beta; nuclear receptor, coactivator, ligand, hormone/growth factor receptor complex; HET: REA; 2.90A {Mus musculus} SCOP: a.123.1.1
Probab=99.97 E-value=2.3e-31 Score=237.43 Aligned_cols=165 Identities=19% Similarity=0.162 Sum_probs=151.4
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCccccccccccc-------hhHHHHHHHHHHHHHHHHhcCCChh
Q psy16761 73 KTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESCKSRH-------VDIEEEVIRFQSVLNEFKVLNIDPY 145 (261)
Q Consensus 73 ~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~~~~~ll~~~~~~~-------~~~~~~~~~l~~~~~~l~~L~l~~~ 145 (261)
.|+|..|+.+||+.+||.+|.++++++.|+++...+ +.+++++|..+ .++.+.++.+.+++.+|++|++|.+
T Consensus 94 iP~F~~L~~~DQi~LLk~~~~el~lL~~a~~s~~~~-~~l~~~~g~~~~~~~~~~~g~~~~~~~i~~~~~~l~~L~ld~~ 172 (303)
T 1xdk_B 94 LPGFTGLTIADQITLLKAACLDILILRICTRYTPEQ-DTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDT 172 (303)
T ss_dssp STTTSSSCHHHHHHHHHHHHHHHHHHHHHTTEETTT-TEEECTTCBEEEHHHHHHTTTGGGHHHHHHHHHHHGGGCCCHH
T ss_pred CcccccCCHHHHHHHHHhhHHHHHHHHHHHHhcccC-CeEEecCCceecHHHHhhcCcHHHHHHHHHHHHHHHHHhCCHH
Confidence 699999999999999999999999999999998753 56777777543 2233456778899999999999999
Q ss_pred hhhhhhHhhhcccCcccccccCCCCCCCCCCCCCCCcCcCcHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHhhccc
Q psy16761 146 EYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPR 225 (261)
Q Consensus 146 E~~lLkai~l~~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~lq~~~~~~L~~~~~~~~~~~~~Rf~~LL~~Lp~ 225 (261)
||+|||||+||||| ++|+++...|+++|++++.+|.+||..+||+++.||++||++||.
T Consensus 173 E~~lLkAivL~~pd---------------------~~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~L~~ 231 (303)
T 1xdk_B 173 ETGLLSAICLICGD---------------------RQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITD 231 (303)
T ss_dssp HHHHHHHHHHSCSC---------------------SSSCSSHHHHHHHTHHHHHHHHHHHHHHCTTCTTHHHHHHTHHHH
T ss_pred HHHHHHHHHHhCCC---------------------CCCCccHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Confidence 99999999999999 999999999999999999999999999999999999999999999
Q ss_pred ccCCCcccchhhhcccccCCCCcHHHHHHHHHhcC
Q psy16761 226 LKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 260 (261)
Q Consensus 226 Lr~~~~~~~e~l~f~~~~g~~~~i~~ll~eml~~~ 260 (261)
||+++.+.+|++||.+++| ++|+++|+.||+.+.
T Consensus 232 Lr~l~~~~~e~l~~~~~~~-~~~~~~Ll~Eml~~~ 265 (303)
T 1xdk_B 232 LRSISAKGAERVITLKMEI-PGSMPPLIQEMLENS 265 (303)
T ss_dssp HHHHHHHHHHHHHHHTTTC-SSCCCHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHhcC-CCCccHHHHHHHcCC
Confidence 9999999999999999999 999999999999754
No 18
>3oll_A Estrogen receptor beta; steroid binding, phosphorylation, hormone receptor-activator; HET: PTR EST; 1.50A {Homo sapiens} SCOP: a.123.1.1 PDB: 1u3s_A* 1u3q_A* 1x78_A* 1x7b_A* 1x7j_A* 1x76_A* 2yjd_A* 3ols_A* 3omo_A* 3omp_A* 3omq_A* 1u3r_A* 1u9e_A* 1qkm_A* 2giu_A* 1nde_A* 2jj3_A* 2i0g_A* 2qtu_A* 2z4b_A* ...
Probab=99.97 E-value=1.1e-31 Score=231.64 Aligned_cols=165 Identities=16% Similarity=0.174 Sum_probs=147.2
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCccccccccccc--------hhHHHHHHHHHHHHHHHHhcCCCh
Q psy16761 73 KTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESCKSRH--------VDIEEEVIRFQSVLNEFKVLNIDP 144 (261)
Q Consensus 73 ~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~~~~~ll~~~~~~~--------~~~~~~~~~l~~~~~~l~~L~l~~ 144 (261)
.|+|..|+.+||+.++|++|.++++++.|+++.+.+ +.+++++|... .++.+.++.+.+++.+|++|++|.
T Consensus 56 lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~~s~~~~-~~l~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld~ 134 (240)
T 3oll_A 56 IPGFVELSLFDQVRLLESCWMEVLMMGLMWRSIDHP-GKLIFAPDLVLDRDEGKCVEGILEIFDMLLATTSRFRELKLQH 134 (240)
T ss_dssp STTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHTTST-TEEEEETBEEEEGGGGGGSTTHHHHHHHHHHHHHHHHHTTCCH
T ss_pred CcCcccCCHHHHHHHHHHHHHHHHHHHHHHHccCCC-CeeEecCCcccchhhHHHHhhHHHHHHHHHHHHHHHHHhCCCH
Confidence 599999999999999999999999999999998855 55666666422 456677788899999999999999
Q ss_pred hhhhhhhHhhhcccCcccccccCCCCCCCCCCCCCCCcCcC-------cHHHHHHHHHHHHHHHHHHHHhcC---CCCcc
Q psy16761 145 YEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLR-------DVIAIAAIQGHTQIFLNKYIHTVY---PSQPT 214 (261)
Q Consensus 145 ~E~~lLkai~l~~pd~~~~~~~~~~~~~~~~~~~~~~~~l~-------~~~~i~~lq~~~~~~L~~~~~~~~---~~~~~ 214 (261)
+||+|||||+||||| ++|++ +.++|+++|+++..+|.+||..++ |++|.
T Consensus 135 ~E~~lLkAivL~~pd---------------------~~gLs~~~~~~~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~~~~ 193 (240)
T 3oll_A 135 KEYLCVKAMILLNSS---------------------MYPLVTATQDADSSRKLAHLLNAVTDALVWVIAKSGISSQQQSM 193 (240)
T ss_dssp HHHHHHHHHHHHCSC---------------------CCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHHcCCC---------------------CCCcccccchhhHHHHHHHHHHHHHHHHHHHHhccCCCCcchhh
Confidence 999999999999999 66654 457899999999999999998763 57899
Q ss_pred HHHHHHhhcccccCCCcccchhhhcccccCCCCcHHHHHHHHHhcC
Q psy16761 215 RFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 260 (261)
Q Consensus 215 Rf~~LL~~Lp~Lr~~~~~~~e~l~f~~~~g~~~~i~~ll~eml~~~ 260 (261)
||++||++||.||+++.+++|++||.+++| ++|+++++.||+++.
T Consensus 194 Rf~~LL~~Lp~Lr~l~~~~~e~l~~~~~~g-~~~~~~Ll~eml~~~ 238 (240)
T 3oll_A 194 RLANLLMLLSHVRHASNKGMEHLLNMKCKN-VVPVYDLLLEMLNAH 238 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSCCCHHHHHHHHHC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHhcc
Confidence 999999999999999999999999999999 999999999999863
No 19
>1xpc_A Estrogen receptor; nuclear receptor, transcription factor, ER-alpha, antagonist hormone-growth factor receptor complex; HET: AIT; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 1sj0_A* 1xp1_A* 1xp9_A* 1xp6_A* 1yim_A* 1yin_A* 3ert_A* 1r5k_A* 3erd_A* 1l2i_A* 2iok_A* 1a52_A* 2ouz_A* 1ere_A* 1err_A* 2qxs_A* 3q95_A* 3q97_A* 2b1z_A* 1zky_A* ...
Probab=99.97 E-value=2.5e-31 Score=230.64 Aligned_cols=173 Identities=15% Similarity=0.177 Sum_probs=150.5
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCccccccccccc--------hhHHHHHHHHHHHHHHHHhcCCCh
Q psy16761 73 KTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESCKSRH--------VDIEEEVIRFQSVLNEFKVLNIDP 144 (261)
Q Consensus 73 ~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~~~~~ll~~~~~~~--------~~~~~~~~~l~~~~~~l~~L~l~~ 144 (261)
.|+|..|+.+||+.++|.+|.++++++.|+++...+ +.+++++|... .++.+.++.+.+++.+|++|++|.
T Consensus 58 lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~~s~~~~-~~l~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld~ 136 (248)
T 1xpc_A 58 VPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHP-GKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQG 136 (248)
T ss_dssp STTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHTTST-TEEEEETTEEEEHHHHTTSTTHHHHHHHHHHHHHHHHHHTCCH
T ss_pred CCccccCCHHHHHHHHHHHhHHHHHHHHHHHhcccc-CceeecCCceeCccchhhhccHHHHHHHHHHHHHHHHHhCCCH
Confidence 499999999999999999999999999999998765 55666666432 345667788899999999999999
Q ss_pred hhhhhhhHhhhcccCcccccccCCCCCCCCCCCCCCCcCcCcHHHHHHHHHHHHHHHHHHHHhcC---CCCccHHHHHHh
Q psy16761 145 YEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVY---PSQPTRFCKIQL 221 (261)
Q Consensus 145 ~E~~lLkai~l~~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~lq~~~~~~L~~~~~~~~---~~~~~Rf~~LL~ 221 (261)
+||+|||||+|||||.. +-|.++++|+++..+|+++|++++.+|.+||..++ |++|.||++||+
T Consensus 137 ~E~~lLkAivL~~pd~~-------------~ls~~~~~gl~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~~~Rf~~LL~ 203 (248)
T 1xpc_A 137 EEFVCLKSIILLNSGVY-------------TFLSSTLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLL 203 (248)
T ss_dssp HHHHHHHHHHHHHTTTT-------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccc-------------ccccccccccccHHHHHHHHHHHHHHHHHHHHccCCCCcchhhHHHHHHH
Confidence 99999999999999910 01111147888889999999999999999998875 478899999999
Q ss_pred hcccccCCCcccchhhhcccccCCCCcHHHHHHHHHhcC
Q psy16761 222 ILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 260 (261)
Q Consensus 222 ~Lp~Lr~~~~~~~e~l~f~~~~g~~~~i~~ll~eml~~~ 260 (261)
+||.||+++.+.+|+++|.+++| ++|+++|+.||+++.
T Consensus 204 ~L~~Lr~~~~~~~e~l~~~~~~~-~~~~~~Ll~eml~~~ 241 (248)
T 1xpc_A 204 ILSHIRHMSNKGMEHLYSMKCKN-VVPLYDLLLEMLDAH 241 (248)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSCC-SSCHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHhCC
Confidence 99999999999999999999999 999999999999864
No 20
>1pdu_A DHR38, nuclear hormone receptor HR38; nuclear receptor, ligand-binding domain, hormone/growth factor receptor complex; 2.30A {Drosophila melanogaster} SCOP: a.123.1.1
Probab=99.97 E-value=8.8e-31 Score=226.86 Aligned_cols=164 Identities=18% Similarity=0.171 Sum_probs=149.6
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCccccccccccc------hhHHHHHHHHHHHHHHHHhcCCChhh
Q psy16761 73 KTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESCKSRH------VDIEEEVIRFQSVLNEFKVLNIDPYE 146 (261)
Q Consensus 73 ~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~~~~~ll~~~~~~~------~~~~~~~~~l~~~~~~l~~L~l~~~E 146 (261)
.|+|..|+.+||+.++|.+|.|+++++.|+++.. +.+.+++++|... .++.+.++.+.+++.+|++|++|.+|
T Consensus 70 lP~F~~L~~~DQi~LLk~~~~el~lL~~a~rs~~-~~~~l~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld~~E 148 (244)
T 1pdu_A 70 IPGYFDLLPEDQELLFQSASLELFVLRLAYRARI-DDTKLIFCNGTVLHRTQCLRSFGEWLNDIMEFSRSLHNLEIDISA 148 (244)
T ss_dssp STTGGGSCHHHHHHHHHHHHHHHHHHHHHHHCCS-SCSEEECTTSBEEEHHHHHHHHTTHHHHHHHHHHHHHHHCCCHHH
T ss_pred CCCcccCCHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCceEeeCCeeecHHHHHhHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5999999999999999999999999999999975 4556777777543 23445677888999999999999999
Q ss_pred hhhhhHhhhcccCcccccccCCCCCCCCCCCCCCCcCcCcHHHHHHHHHHHHHHHHHHHHhcCC--CCccHHHHHHhhcc
Q psy16761 147 YDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYP--SQPTRFCKIQLILP 224 (261)
Q Consensus 147 ~~lLkai~l~~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~lq~~~~~~L~~~~~~~~~--~~~~Rf~~LL~~Lp 224 (261)
|+|||||+||| | ++|+++.+.|+++|++++.+|.+||..+|| ++|.||++||++||
T Consensus 149 ~~lLkAIvLfn-d---------------------~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~~~Rf~~LL~~L~ 206 (244)
T 1pdu_A 149 FACLCALTLIT-E---------------------RHGLREPKKVEQLQMKIIGSLRDHVTYNAEAQKKQHYFSRLLGKLP 206 (244)
T ss_dssp HHHHHHHHHSS-C---------------------CTTCSCHHHHHHHHHHHHHHHHHHHHHCHHHHTSTTHHHHHHTHHH
T ss_pred HHHHHHHHHhC-C---------------------CCCCccHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHH
Confidence 99999999998 7 899999999999999999999999998886 68999999999999
Q ss_pred cccCCCcccchhhhcccccCCCCcHHHHHHHHHhcC
Q psy16761 225 RLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 260 (261)
Q Consensus 225 ~Lr~~~~~~~e~l~f~~~~g~~~~i~~ll~eml~~~ 260 (261)
.||+++.+.+|++||.+++| .+|+++|+.||+.++
T Consensus 207 ~Lr~l~~~~~e~l~~~~~~g-~~~~~~Ll~Eml~~~ 241 (244)
T 1pdu_A 207 ELRSLSVQGLQRIFYLKLED-LVPAPALIENMFVTT 241 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-SSCCCHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHHccCC-CCCchHHHHHHHhCC
Confidence 99999999999999999999 999999999999875
No 21
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens}
Probab=99.97 E-value=1.3e-30 Score=236.47 Aligned_cols=166 Identities=19% Similarity=0.311 Sum_probs=135.2
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCC-Cccccccccccc--------hh--HHHHHHHHHHHHHHHHhcC
Q psy16761 73 KTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLD-LGELVESCKSRH--------VD--IEEEVIRFQSVLNEFKVLN 141 (261)
Q Consensus 73 ~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~~-~~~ll~~~~~~~--------~~--~~~~~~~l~~~~~~l~~L~ 141 (261)
.|+|..|+.+||+.+||++|.|+++++.|+++...+ .+.+++++|..+ .+ +.+.++.+.+++.+|++|+
T Consensus 174 iP~F~~L~~~DQi~LLk~~w~ElllL~~a~rs~~~~~~~~ll~~~G~~i~~~~~~~~~g~~~~~l~~~l~~l~~~l~~L~ 253 (352)
T 3tx7_B 174 SIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQ 253 (352)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHHHHHHTCCSSCCBCTTCCBCCHHHHHHTSCHHHHHHHHHHHHHHHHHHHTT
T ss_pred ChhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCCcccHHHHHHhccccHHHHHHHHHHHHHHHHHHc
Confidence 799999999999999999999999999999886543 355666666533 11 2456788899999999999
Q ss_pred CChhhhhhhhHhhhcccCcccccccCCCCCCCCCCCCCCCcCcCcHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHh
Q psy16761 142 IDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQL 221 (261)
Q Consensus 142 l~~~E~~lLkai~l~~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~lq~~~~~~L~~~~~~~~~~~~~Rf~~LL~ 221 (261)
+|.+||+|||||+||||| ++|+++..+|+++|++++.+|.+||..+||+++.||++||+
T Consensus 254 ld~~EyalLkAIvLfnpd---------------------~~gLs~~~~Ve~lQe~~~~aL~~y~~~~~p~~~~RF~kLLl 312 (352)
T 3tx7_B 254 FDQREFVCLKFLVLFSLD---------------------VKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLL 312 (352)
T ss_dssp CCHHHHHHHHHHHHSCSC---------------------C------CHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCC---------------------CCCCchHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 999999999999999999 89999999999999999999999999999999999999999
Q ss_pred hcccccCCCcccchhhhcccccCCCCcHHHHHHHHHhcC
Q psy16761 222 ILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 260 (261)
Q Consensus 222 ~Lp~Lr~~~~~~~e~l~f~~~~g~~~~i~~ll~eml~~~ 260 (261)
+||.||+++.+.+|++||++++| .+|+++|+.||+++.
T Consensus 313 lLp~LR~ls~~~~e~L~~~kl~g-~~~i~~LL~EMl~ak 350 (352)
T 3tx7_B 313 RLPEIRAISMQAEEYLYYKHLNG-DVPYNNLLIEMLHAK 350 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT-CSCSSCHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhhhcC-CCCccHHHHHHHhcc
Confidence 99999999999999999999999 999999999999864
No 22
>1l2j_A Estrogen receptor beta; nuclear receptor, transcription factor, antagonist transcription receptor; HET: ETC; 2.95A {Homo sapiens} SCOP: a.123.1.1
Probab=99.97 E-value=1e-30 Score=229.69 Aligned_cols=165 Identities=16% Similarity=0.177 Sum_probs=144.2
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCccccccccccc--------hhHHHHHHHHHHHHHHHHhcCCCh
Q psy16761 73 KTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESCKSRH--------VDIEEEVIRFQSVLNEFKVLNIDP 144 (261)
Q Consensus 73 ~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~~~~~ll~~~~~~~--------~~~~~~~~~l~~~~~~l~~L~l~~ 144 (261)
.|+|..|+.+||+.++|.+|.++++++.||++++.+ +.+++++|... .++.+.++.+.+++.+|++|++|.
T Consensus 82 lP~F~~L~~~DQi~LLk~~w~el~iL~~a~rs~~~~-~~l~~~~g~~~~~~~~~~~~g~~~~~~~l~~~~~~l~~L~ld~ 160 (271)
T 1l2j_A 82 IPGFVELSLFDQVRLLESCWMEVLMMGLMWRSIDHP-GKLIFAPDLVLDRDEGKCVEGILEIFDMLLATTSRFRELKLQH 160 (271)
T ss_dssp STTGGGSCHHHHHHHHHTTHHHHHHHHHHHHTSSST-TEECSSSSCCEETGGGGGSTTHHHHHHHHHHHHHHHHHTTCCH
T ss_pred CcccccCCHHHHHHHHHHHHHHHHHHHHHHHhhccC-CeeeecCCccccchhhhhhccHHHHHHHHHHHHHHHHHhCCCH
Confidence 699999999999999999999999999999998765 55666666422 355677788889999999999999
Q ss_pred hhhhhhhHhhhcccCcccccccCCCCCCCCCCCCCCCcCcCc-------HHHHHHHHHHHHHHHHHHHHhc---CCCCcc
Q psy16761 145 YEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRD-------VIAIAAIQGHTQIFLNKYIHTV---YPSQPT 214 (261)
Q Consensus 145 ~E~~lLkai~l~~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~i~~lq~~~~~~L~~~~~~~---~~~~~~ 214 (261)
+||+|||||+||||| ++|+++ .++|+++|++|..+|.+||..+ +|++|.
T Consensus 161 ~E~~lLkAIvLfnpd---------------------~~gLs~~~~~~~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~~~~ 219 (271)
T 1l2j_A 161 KEYLCVKAMILLNSS---------------------MYPLVTATQDADSSRKLAHLLNAVTDALVWVIAKSGISSQQQSM 219 (271)
T ss_dssp HHHHHHHHHHHHHC-------------------------CCCCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHHcCCC---------------------cCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhH
Confidence 999999999999999 666654 5689999999999999999876 357899
Q ss_pred HHHHHHhhcccccCCCcccchhhhcccccCCCCcHHHHHHHHHhcC
Q psy16761 215 RFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 260 (261)
Q Consensus 215 Rf~~LL~~Lp~Lr~~~~~~~e~l~f~~~~g~~~~i~~ll~eml~~~ 260 (261)
||++||++||.||+++.+.+|+++|.+++| ++|+++|+.||+++.
T Consensus 220 Rf~~LLl~Lp~Lr~i~~~~~e~l~~~~~~g-~~~~~~Ll~Eml~~~ 264 (271)
T 1l2j_A 220 RLANLLMLLSHVRHASNKGMEHLLNMKCKN-VVPVYDLLLEMLNAH 264 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCTTS-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCChHHHHHHHHcCC
Confidence 999999999999999999999999999999 999999999999753
No 23
>2ocf_A Estrogen receptor; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens}
Probab=99.97 E-value=8e-31 Score=233.30 Aligned_cols=173 Identities=15% Similarity=0.181 Sum_probs=145.0
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCccccccccccc--------hhHHHHHHHHHHHHHHHHhcCCCh
Q psy16761 73 KTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESCKSRH--------VDIEEEVIRFQSVLNEFKVLNIDP 144 (261)
Q Consensus 73 ~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~~~~~ll~~~~~~~--------~~~~~~~~~l~~~~~~l~~L~l~~ 144 (261)
.|+|..|+.+||+.+||.+|.++++++.|+++...+ +.+++++|... .++.+.++.+.+++.+|++|++|.
T Consensus 67 lP~F~~L~~~DQi~LLk~~w~el~lL~~a~rs~~~~-~~l~~~~g~~~~~~~~~~~~g~~~~~~~l~~~~~~l~~L~ld~ 145 (298)
T 2ocf_A 67 VPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHP-GKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQG 145 (298)
T ss_dssp STTGGGSCHHHHHHHHHHHHHHHHHHHHHHHTTTST-TEEEEETTEEEEHHHHTTSTTHHHHHHHHHHHHHHHHHTTCCH
T ss_pred CcchhcCCHHHHHHHHHHhhHHHHHHHHHHHhcccC-CceeecCCceechhhhhhhhhHHHHHHHHHHHHHhHhhhCcCH
Confidence 599999999999999999999999999999998764 55666666422 345667788889999999999999
Q ss_pred hhhhhhhHhhhcccCcccccccCCCCCCCCCCCCCCCcCcCcHHHHHHHHHHHHHHHHHHHHhcC---CCCccHHHHHHh
Q psy16761 145 YEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVY---PSQPTRFCKIQL 221 (261)
Q Consensus 145 ~E~~lLkai~l~~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~lq~~~~~~L~~~~~~~~---~~~~~Rf~~LL~ 221 (261)
+||+|||||+|||||.. +-|+++.+|+++..+|+++|+++..+|.+||..++ |+++.||++||+
T Consensus 146 ~Ey~lLkAIvLfnpd~~-------------~LS~~~~~gL~~~~~ve~lqe~~~~aL~~y~~~~~~~~~~~~~RF~~LLl 212 (298)
T 2ocf_A 146 EEFVCLKSIILLNSGVY-------------TFLSSTLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLL 212 (298)
T ss_dssp HHHHHHHHHHHHHCSCC-------------C-----------CHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcc-------------ccccccccccccHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 99999999999999910 00111137888999999999999999999998764 578899999999
Q ss_pred hcccccCCCcccchhhhcccccCCCCcHHHHHHHHHhcC
Q psy16761 222 ILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 260 (261)
Q Consensus 222 ~Lp~Lr~~~~~~~e~l~f~~~~g~~~~i~~ll~eml~~~ 260 (261)
+||.||+++.+.+|+++|.+++| ++|+++|+.||+.+.
T Consensus 213 ~Lp~Lr~i~~~~~e~l~~~kl~g-~~~i~~Ll~Eml~~~ 250 (298)
T 2ocf_A 213 ILSHIRHMSNKGMEHLYSMKCKN-VVPLSDLLLEMLDAH 250 (298)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-SSCCCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC-CCcHHHHHHHHHcCC
Confidence 99999999999999999999999 999999999999864
No 24
>1hg4_A Ultraspiracle; nuclear hormone receptor, transcription factor, ligand binding; HET: LPP; 2.4A {Drosophila melanogaster} SCOP: a.123.1.1
Probab=99.97 E-value=8.3e-30 Score=224.61 Aligned_cols=166 Identities=19% Similarity=0.215 Sum_probs=144.5
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCcc--------------------------ccccccccc------
Q psy16761 73 KTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGE--------------------------LVESCKSRH------ 120 (261)
Q Consensus 73 ~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~~~~~--------------------------ll~~~~~~~------ 120 (261)
.|+|..|+.+||+.++|.+|.++++++.||+++..+.+. ++++.+...
T Consensus 70 lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~rs~~~~~~~~~~~~~~~~~~dGs~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (279)
T 1hg4_A 70 MPHFAQVPLDDQVILLKAAWIELLIANVAWCSIVSLDDGGAGGGGGGLGHDGSFERRSPGLQPQQLFLNQSFSYHRNSAI 149 (279)
T ss_dssp STTGGGSCHHHHHHHHHHHHHHHHHHHHHHHTTTTC-------------------------CCCEEESSSSCEEEHHHHH
T ss_pred CCChhhCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccccccccccccCccccccccccccceeeecCCcccchhhHh
Confidence 599999999999999999999999999999988764331 222222211
Q ss_pred -hhHHHHH-HHHHHHHHHHHhcCCChhhhhhhhHhhhcccCcccccccCCCCCCCCCCCCCCCcCcCcHHHHHHHHHHHH
Q psy16761 121 -VDIEEEV-IRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198 (261)
Q Consensus 121 -~~~~~~~-~~l~~~~~~l~~L~l~~~E~~lLkai~l~~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~lq~~~~ 198 (261)
.++...+ +.+.+++.+|++|++|.+||+|||||+||||| ++|+++...|+++|++++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~L~ld~~E~~lLkAivL~npd---------------------~~gL~~~~~v~~lq~~~~ 208 (279)
T 1hg4_A 150 KAGVSAIFDRILSELSVKMKRLNLDRRELSCLKAIILYNPD---------------------IRGIKSRAEIEMCREKVY 208 (279)
T ss_dssp HHTCHHHHHHHHHHTHHHHHHHTCCHHHHHHHHHHHHSCTT---------------------STTCSCHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC---------------------CCCCCCHHHHHHHHHHHH
Confidence 1222333 34568999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHhcCCCCccHHHHHHhhcccccCCCcccchhhhcccccCCCCcHHHHHHHHHhcC
Q psy16761 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 260 (261)
Q Consensus 199 ~~L~~~~~~~~~~~~~Rf~~LL~~Lp~Lr~~~~~~~e~l~f~~~~g~~~~i~~ll~eml~~~ 260 (261)
.+|.+||..+||+++.||++||+++|.||+++.+.+++++|.+++| ++|+++|+.||+.++
T Consensus 209 ~aL~~y~~~~~p~~~~Rf~~LL~~L~~Lr~~~~~~~e~l~~~~~~g-~~~~~~Ll~Eml~~~ 269 (279)
T 1hg4_A 209 ACLDEHCRLEHPGDDGRFAQLLLRLPALRSISLKCQDHLFLFRITS-DRPLEELFLEQLEAP 269 (279)
T ss_dssp HHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCBC-SSCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC-CCcHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999 999999999999864
No 25
>3b0t_A Vitamin D3 receptor; nuclear receptor, transcription, gene regulation; HET: MCZ; 1.30A {Homo sapiens} PDB: 3a40_X* 1s0z_A* 1s19_A* 2ham_A* 2har_A* 2has_A* 1txi_A* 2hb8_A* 2hb7_A* 3a3z_X* 3a78_A* 3auq_A* 3aur_A* 3ax8_A* 3cs4_A* 3cs6_A* 1ie9_A* 1db1_A* 1ie8_A* 3kpz_A* ...
Probab=99.96 E-value=1.5e-30 Score=226.42 Aligned_cols=163 Identities=17% Similarity=0.129 Sum_probs=145.9
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCccccccc-cccc-------hhHH-HHHHHHHHHHHHHHhcCCC
Q psy16761 73 KTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESC-KSRH-------VDIE-EEVIRFQSVLNEFKVLNID 143 (261)
Q Consensus 73 ~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~~~~~ll~~~-~~~~-------~~~~-~~~~~l~~~~~~l~~L~l~ 143 (261)
.|+|..|+.+||+.++|.+|.++++++.|+++.+ +.+.+++++ +... .++. +.++.+.+++.+|++|++|
T Consensus 79 ip~F~~L~~~DQ~~LLk~~~~el~~l~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld 157 (254)
T 3b0t_A 79 IPGFRDLTSEDQIVLLKSSAIEVIMLRSNESFTM-DDMSWTCGNQDYKYRVSDVTKAGHSLELIEPLIKFQVGLKKLNLH 157 (254)
T ss_dssp STTGGGSCHHHHHHHHHHHHHHHHHHHGGGTEET-TTTEEECSSGGGEECHHHHHTTTCCHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCeEEecCCCeeeeHHHHHHcCCcHHHHHHHHHHHHHHHHhcCC
Confidence 5999999999999999999999999999998655 344455553 3211 1333 6677888999999999999
Q ss_pred hhhhhhhhHhhhcccCcccccccCCCCCCCCCCCCCCCcCcCcHHHHHHHHHHHHHHHHHHHHhcCC--CCccHHHHHHh
Q psy16761 144 PYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYP--SQPTRFCKIQL 221 (261)
Q Consensus 144 ~~E~~lLkai~l~~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~lq~~~~~~L~~~~~~~~~--~~~~Rf~~LL~ 221 (261)
.+||+|||||+||||| ++|+++...|+++|++++.+|.+||..+|| ++|.||++||+
T Consensus 158 ~~E~~lLkAivL~~pd---------------------~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~~Rf~~LL~ 216 (254)
T 3b0t_A 158 EEEHVLLMAICIVSPD---------------------RPGVQDAALIEAIQDRLSNTLQTYIRCRHPPPGSHLLYAKMIQ 216 (254)
T ss_dssp HHHHHHHHHHHHSCSC---------------------STTCSCHHHHHHHHHHHHHHHHHHHHHHCCTTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC---------------------ccCCcCHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHH
Confidence 9999999999999999 999999999999999999999999999999 88999999999
Q ss_pred hcccccCCCcccchhhhcccc--cCCCCcHHHHHHHHHh
Q psy16761 222 ILPRLKSIPSLVLEELFFRNI--IGHNTTIKKTIWHMYK 258 (261)
Q Consensus 222 ~Lp~Lr~~~~~~~e~l~f~~~--~g~~~~i~~ll~eml~ 258 (261)
+||.||+++.+.+|++||.++ .| ++|+++|+.||+.
T Consensus 217 ~L~~Lr~l~~~~~e~l~~~~~~~~~-~~~~~~Ll~Em~~ 254 (254)
T 3b0t_A 217 KLADLRSLNEEHSKQYRCLSFQPEC-SMKLTPLVLEVFG 254 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTH-HHHSCHHHHHHHC
T ss_pred HhHHHHHHHHHHHHHHHHHhccccC-CCCCChHHHHhcC
Confidence 999999999999999999999 77 7899999999984
No 26
>1yye_A ER-beta, estrogen receptor beta; ER-beta, nuclear receptor, transcription factor, agonist; HET: 196; 2.03A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yy4_A*
Probab=99.96 E-value=8.9e-31 Score=229.77 Aligned_cols=164 Identities=16% Similarity=0.175 Sum_probs=144.0
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccccc--------chhHHHHHHHHHHHHHHHHhcCCCh
Q psy16761 73 KTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESCKSR--------HVDIEEEVIRFQSVLNEFKVLNIDP 144 (261)
Q Consensus 73 ~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~~~~~ll~~~~~~--------~~~~~~~~~~l~~~~~~l~~L~l~~ 144 (261)
.|+|..|+.+||+.++|.+|.++++++.|+++++.+ +.+++++|.. ..++.+.++.+.+++.+|++|++|.
T Consensus 54 lp~F~~L~~~DQi~LLk~~w~el~lL~~a~rs~~~~-~~l~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld~ 132 (268)
T 1yye_A 54 IPGFVELSLFDQVRLLESCWMEVLMMGLMWRSIDHP-GKLIFAPDLVLDRDEGKCVEGILEIFDMLLATTSRFRELKLQH 132 (268)
T ss_dssp STTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHTTST-TEEEEETTEEEEGGGGGGSTTHHHHHHHHHHHHHHHHHHTCCH
T ss_pred CcchhcCCHHHHHHHHHHHHHHHHHHHHHHHhccCC-CceEecCCcccChhhHhhhccHHHHHHHHHHHHHHHHHhCCCH
Confidence 599999999999999999999999999999998765 5566665532 2355677788899999999999999
Q ss_pred hhhhhhhHhhhcccCcccccccCCCCCCCCCCCCCCCcCcCc-------HHHHHHHHHHHHHHHHHHHHhcC---CCCcc
Q psy16761 145 YEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRD-------VIAIAAIQGHTQIFLNKYIHTVY---PSQPT 214 (261)
Q Consensus 145 ~E~~lLkai~l~~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~i~~lq~~~~~~L~~~~~~~~---~~~~~ 214 (261)
+||+|||||+||||| ++|+++ ..+|+++|+++..+|.+||..++ |+++.
T Consensus 133 ~E~~lLkAIvLfnpd---------------------~~gLs~~~~~~~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~~~~ 191 (268)
T 1yye_A 133 KEYLCVKAMILLNSS---------------------MYPLVTATQDADSSRKLAHLLNAVTDALVWVIAKSGISSQQQSM 191 (268)
T ss_dssp HHHHHHHHHHHHTCC---------------------C----------CCHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHcCCC---------------------CCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhh
Confidence 999999999999999 777754 67999999999999999998774 57899
Q ss_pred HHHHHHhhcccccCCCcccchhhhcccccCCCCcHHHHHHHHHhc
Q psy16761 215 RFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKN 259 (261)
Q Consensus 215 Rf~~LL~~Lp~Lr~~~~~~~e~l~f~~~~g~~~~i~~ll~eml~~ 259 (261)
||++||++||.||+++.+.+|++||.+++| ++|+++|+.||+.+
T Consensus 192 Rf~~LLl~Lp~Lr~i~~~~~e~l~~~~~~g-~~~~~~Ll~Eml~~ 235 (268)
T 1yye_A 192 RLANLLMLLSHVRHASNKGMEHLLNMKCKN-VVPVYDLLLEMLNA 235 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCCHHHHHHHHHhC
Confidence 999999999999999999999999999999 99999999999975
No 27
>1lbd_A RXR_LBD, retinoid X receptor; transcription factor, nuclear receptor, structural proteomic europe, spine, structural genomics; 2.70A {Homo sapiens} SCOP: a.123.1.1 PDB: 1z5x_U* 2q60_A
Probab=99.96 E-value=2.7e-30 Score=228.07 Aligned_cols=165 Identities=25% Similarity=0.403 Sum_probs=148.6
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCccccccccccc-------hhHHHHHH-HHHHHHHHHHhcCCCh
Q psy16761 73 KTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESCKSRH-------VDIEEEVI-RFQSVLNEFKVLNIDP 144 (261)
Q Consensus 73 ~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~~~~~ll~~~~~~~-------~~~~~~~~-~l~~~~~~l~~L~l~~ 144 (261)
.|+|..|+.+||+.+||.+|.++++++.|+++++.+.+ +++++|..+ .++...+. .+.+++.+|++|++|.
T Consensus 106 ip~F~~L~~~DQ~~LLk~~~~el~il~~a~rs~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ld~ 184 (282)
T 1lbd_A 106 IPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG-ILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDK 184 (282)
T ss_dssp STTGGGSCHHHHHHHHHHHHHHHHHHHHHHGGGGSSSE-EECTTSCEEEHHHHHHTTTHHHHHHHHHHHHHHTTTTCCCH
T ss_pred CcChhcCCHHHHHHHHHHHHHHHHHHHHHHhcccCCCc-eEecCCcccccchhhhcccHHHHHHHHHHHHHHHHhhcCCH
Confidence 69999999999999999999999999999999876544 455666533 12333333 4568999999999999
Q ss_pred hhhhhhhHhhhcccCcccccccCCCCCCCCCCCCCCCcCcCcHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHhhcc
Q psy16761 145 YEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILP 224 (261)
Q Consensus 145 ~E~~lLkai~l~~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~lq~~~~~~L~~~~~~~~~~~~~Rf~~LL~~Lp 224 (261)
+||+|||||+||||| ++|+++..+|+++|++++.+|.+||..+||++|.||++||++||
T Consensus 185 ~E~~lLkaivL~~pd---------------------~~gLs~~~~v~~lq~~~~~~L~~y~~~~~~~~~~Rf~~LL~~L~ 243 (282)
T 1lbd_A 185 TELGCLRAIVLFNPD---------------------SKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLP 243 (282)
T ss_dssp HHHHHHHHHHHSCTT---------------------CTTCSCHHHHHHHHHHHHHHHHHHHHHHSCCSTTTHHHHHTTHH
T ss_pred HHHHHHHHHHHcCCC---------------------CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 999999999999999 89999999999999999999999999999999999999999999
Q ss_pred cccCCCcccchhhhcccccCCCCcHHHHHHHHHhcC
Q psy16761 225 RLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 260 (261)
Q Consensus 225 ~Lr~~~~~~~e~l~f~~~~g~~~~i~~ll~eml~~~ 260 (261)
.||.++.+.+|++||.+++| ++|+++++.|||.++
T Consensus 244 ~Lr~~~~~~~e~l~~~~~~~-~~~i~~ll~eml~~~ 278 (282)
T 1lbd_A 244 ALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEMLEAP 278 (282)
T ss_dssp HHHHHHHHHHTTTHHHHHHH-HHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHhccCC-CCcHHHHHHHHHcCC
Confidence 99999999999999999999 999999999999875
No 28
>1nq7_A Nuclear receptor ROR-beta; ligand-binding domain, retinoids, retinoic acid, synthetic ligand, antagonist, transcription; HET: ARL; 1.50A {Rattus norvegicus} SCOP: a.123.1.1 PDB: 1k4w_A* 1n4h_A*
Probab=99.96 E-value=2.5e-30 Score=223.91 Aligned_cols=161 Identities=12% Similarity=0.099 Sum_probs=145.6
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCccccccccccc-------hhHHHHHHHHHHHHHHHHhcCCChh
Q psy16761 73 KTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESCKSRH-------VDIEEEVIRFQSVLNEFKVLNIDPY 145 (261)
Q Consensus 73 ~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~~~~~ll~~~~~~~-------~~~~~~~~~l~~~~~~l~~L~l~~~ 145 (261)
.|+|..|+.+||+.++|.+|.++++++.|+++.+. .+.+++ +|... .+..+.++.+.+++.+|++|++|.+
T Consensus 73 lp~F~~L~~~DQ~~LLk~~~~el~~l~~a~~~~~~-~~~~~~-~g~~~~~~~~~~~~~~~~~~~i~~~~~~l~~L~ld~~ 150 (244)
T 1nq7_A 73 ITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPL-NNTVLF-EGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEE 150 (244)
T ss_dssp CHHHHTSCHHHHHHHHHHHHHHHHHHHHGGGEETT-TTEEEE-TTEEEEGGGGGGGSCHHHHHHHHHHHHHHHTTCCCHH
T ss_pred CCCcccCCHHHHHHHHHHhHHHHHHHHHHHHhcCC-CCEEeE-CCEEecHHHHhhcChHHHHHHHHHHHHHHHHhCCCHH
Confidence 69999999999999999999999999999988653 344555 44321 2456678888999999999999999
Q ss_pred hhhhhhHhhhcccCcccccccCCCCCCCCCCCCCCCcCcCcHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHhhccc
Q psy16761 146 EYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPR 225 (261)
Q Consensus 146 E~~lLkai~l~~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~lq~~~~~~L~~~~~~~~~~~~~Rf~~LL~~Lp~ 225 (261)
||+|||||+||||| ++|+++.+.|+++|+++..+|.+||..+||+++ ||++||++||.
T Consensus 151 E~~lLkAivL~~pd---------------------~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~-Rf~~LL~~L~~ 208 (244)
T 1nq7_A 151 EIALFSSAVLISPD---------------------RAWLLEPRKVQKLQEKIYFALQHVIQKNHLDDE-TLAKLIAKIPT 208 (244)
T ss_dssp HHHHHHHHHHSCTT---------------------STTCSCHHHHHHHHHHHHHHHHHHHHHHCSCTT-HHHHHHHTHHH
T ss_pred HHHHHHHHHHcCCC---------------------CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcc-HHHHHHHHHHH
Confidence 99999999999999 999999999999999999999999999999888 99999999999
Q ss_pred ccCCCcccchhhhcccccCCCC----cHHHHHHHHHh
Q psy16761 226 LKSIPSLVLEELFFRNIIGHNT----TIKKTIWHMYK 258 (261)
Q Consensus 226 Lr~~~~~~~e~l~f~~~~g~~~----~i~~ll~eml~ 258 (261)
||+++.+.+|+++|.+..| +. |+++|+.||+.
T Consensus 209 Lr~l~~~~~e~l~~~~~~~-~~~~~~~~~~Ll~Em~~ 244 (244)
T 1nq7_A 209 ITAVCNLHGEKLQVFKQSH-PDIVNTLFPPLYKELFN 244 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHC-HHHHHHTSCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhhC-cccccCCCChHHHHhhC
Confidence 9999999999999999999 65 89999999984
No 29
>2p1t_A Retinoic acid receptor RXR-alpha; protein-ligand complex, hormone receptor; HET: 3TN; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 1mvc_A* 1mzn_A* 1mv9_A* 2p1u_A* 2p1v_A* 2zxz_A* 2zy0_A* 3fug_A* 3nsp_A 3nsq_A* 3r29_A 3r2a_A* 3r5m_A* 3e94_A* 3kwy_A* 1fby_A* 3uvv_B* 3fc6_A* 1rdt_A* 3fal_A* ...
Probab=99.96 E-value=1e-29 Score=219.18 Aligned_cols=165 Identities=25% Similarity=0.403 Sum_probs=148.3
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCccccccccccc-------hhHHHHHH-HHHHHHHHHHhcCCCh
Q psy16761 73 KTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESCKSRH-------VDIEEEVI-RFQSVLNEFKVLNIDP 144 (261)
Q Consensus 73 ~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~~~~~ll~~~~~~~-------~~~~~~~~-~l~~~~~~l~~L~l~~ 144 (261)
.|+|..|+.+||+.++|.+|.++++++.++++...+.+ ++.++|..+ .++...+. .+.+++.+|++|++|.
T Consensus 64 ip~F~~L~~~DQ~~LLk~~w~e~~il~~a~rs~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ld~ 142 (240)
T 2p1t_A 64 IPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG-ILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDK 142 (240)
T ss_dssp STTGGGSCHHHHHHHHHHHHHHHHHHHHHHHTTTSSSE-EECTTSCEEEHHHHHTTTCHHHHHHHHHHTHHHHHHTTCCH
T ss_pred CcChhcCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCc-eEecCCcccccchhhhhchHHHHHHHHHHHHHHHHhhCCCH
Confidence 59999999999999999999999999999998876544 455666432 12233333 4568999999999999
Q ss_pred hhhhhhhHhhhcccCcccccccCCCCCCCCCCCCCCCcCcCcHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHhhcc
Q psy16761 145 YEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILP 224 (261)
Q Consensus 145 ~E~~lLkai~l~~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~lq~~~~~~L~~~~~~~~~~~~~Rf~~LL~~Lp 224 (261)
+||+||||+++|||| ++|+++..+|+++|+++..+|.+|+..+||+++.||++||+++|
T Consensus 143 ~E~~~Lkai~l~~pd---------------------~~gl~~~~~ve~~q~~~~~~L~~y~~~~~~~~~~Rf~~LL~~l~ 201 (240)
T 2p1t_A 143 TELGCLRAIVLFNPD---------------------SKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLP 201 (240)
T ss_dssp HHHHHHHHHHHSCTT---------------------CTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHTTHH
T ss_pred HHHHHHHHHHHhcCC---------------------CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 999999999999999 89999999999999999999999999999999999999999999
Q ss_pred cccCCCcccchhhhcccccCCCCcHHHHHHHHHhcC
Q psy16761 225 RLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 260 (261)
Q Consensus 225 ~Lr~~~~~~~e~l~f~~~~g~~~~i~~ll~eml~~~ 260 (261)
.||.++.+.+++++|.+++| .+|+++++.||+.++
T Consensus 202 ~Lr~~~~~~~e~l~~~~~~~-~~~~~~ll~eml~~~ 236 (240)
T 2p1t_A 202 ALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEMLEAP 236 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-CSCCCHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHhCcCC-CCchHHHHHHHHcCC
Confidence 99999999999999999999 999999999999865
No 30
>1ovl_A Orphan nuclear receptor NURR1 (MSe 414, 496, 511); NUUR1, LBD, transcription; 2.20A {Homo sapiens} SCOP: a.123.1.1
Probab=99.96 E-value=1.1e-29 Score=223.07 Aligned_cols=162 Identities=17% Similarity=0.234 Sum_probs=147.1
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCccccccccccc------hhHHHHHHHHHHHHHHHHhcCCChhh
Q psy16761 73 KTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESCKSRH------VDIEEEVIRFQSVLNEFKVLNIDPYE 146 (261)
Q Consensus 73 ~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~~~~~ll~~~~~~~------~~~~~~~~~l~~~~~~l~~L~l~~~E 146 (261)
.|+|..|+.+||+.++|.+|.++++++.|+++.+.+ +.+++++|... .++.+.++.+.+++.+|++|++|.+|
T Consensus 97 ip~F~~L~~~DQ~~LLk~~~~el~~L~~a~~s~~~~-~~l~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld~~E 175 (271)
T 1ovl_A 97 IPGFADLPKADQDLLFESAFLELFVLRLAYRSNPVE-GKLIFCNGVVLHRLQCVRGFGEWIDSIVEFSSNLQNMNIDISA 175 (271)
T ss_dssp STTGGGSCHHHHHHHHHHHHHHHHHHHHHHHSBTTT-TEEECTTSBEEEHHHHTTTTTTHHHHHHHHHHHHHTTCCCHHH
T ss_pred CCCcccCChHHHHHHHHHhHHHHHHHHHHHHhcCCC-CeEEeeCCeeecHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 699999999999999999999999999999998765 46777776542 23445677888999999999999999
Q ss_pred hhhhhHhhhcccCcccccccCCCCCCCCCCCCCCCcCcCcHHHHHHHHHHHHHHHHHHHHhc--CCCCccHHHHHHhhcc
Q psy16761 147 YDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTV--YPSQPTRFCKIQLILP 224 (261)
Q Consensus 147 ~~lLkai~l~~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~lq~~~~~~L~~~~~~~--~~~~~~Rf~~LL~~Lp 224 (261)
|+|||||+||| + ++|+++...|+++|++++.+|.+||..+ +|+++.||++||++||
T Consensus 176 ~~lLkAivL~~-~---------------------~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~~Rf~~LL~~L~ 233 (271)
T 1ovl_A 176 FSCIAALAMVT-E---------------------RHGLKEPKRVEELQNKIVNCLKDHVTFNNGGLNRPNYLSKLLGKLP 233 (271)
T ss_dssp HHHHHHHHHSS-C---------------------CTTCSCHHHHHHHHHHHHHHHHHHHHGGGTTTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHhC-C---------------------CCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCCccccHHHHHHHHHH
Confidence 99999999999 4 5899999999999999999999999876 4688999999999999
Q ss_pred cccCCCcccchhhhcccccCCCCcHHHHHHHHHh
Q psy16761 225 RLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 258 (261)
Q Consensus 225 ~Lr~~~~~~~e~l~f~~~~g~~~~i~~ll~eml~ 258 (261)
.||+++.+.+|++||.+++| .+|+++++.||+.
T Consensus 234 ~Lr~l~~~~~e~l~~~~~~~-~~~~~~Ll~el~~ 266 (271)
T 1ovl_A 234 ELRTLCTQGLQRIFYLKLED-LVPPPAIIDKLFL 266 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-SSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCC-CCCCcHHHHHHHH
Confidence 99999999999999999999 9999999999986
No 31
>3u9q_A Peroxisome proliferator-activated receptor gamma; nuclear receptor, adipogenesis, RXRA, nucleus, transcription; HET: DKA; 1.52A {Homo sapiens} SCOP: a.123.1.1 PDB: 1i7i_A* 3ty0_A* 1zeo_A* 2p4y_A* 3et3_A* 3et0_A* 2hwq_A* 2ath_A* 2f4b_A* 2g0g_A* 2g0h_A* 2gtk_A* 2fvj_A* 2hwr_A* 2prg_A* 2q8s_A* 3fej_A* 3g9e_A* 3gbk_A* 3ia6_A* ...
Probab=99.96 E-value=1e-29 Score=223.10 Aligned_cols=162 Identities=15% Similarity=0.144 Sum_probs=143.4
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCccccccccccc----------hhHHHHHHHHHHHHHHHHhcCC
Q psy16761 73 KTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESCKSRH----------VDIEEEVIRFQSVLNEFKVLNI 142 (261)
Q Consensus 73 ~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~~~~~ll~~~~~~~----------~~~~~~~~~l~~~~~~l~~L~l 142 (261)
.|+|..|+.+||+.+||.+|.|+++++.|++..+ +.++.++|... .++.+.++.+.+++.+|++|++
T Consensus 96 iP~F~~L~~~DQi~LLk~~~~el~lL~~a~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~l 172 (269)
T 3u9q_A 96 IPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNK---DGVLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALEL 172 (269)
T ss_dssp STTGGGSCHHHHHHHHHHHHHHHHHHHHHHTEET---TEEEETTTTEEEEHHHHHHSCTTGGGSSHHHHHHHHHHHTTCC
T ss_pred CCChhhcCHHHHHHHHHHhhHHHHHHHHHHhcCC---CCeEEeCCCccccHHHHHHhhhhHHHHHHHHHHHHHHHHhhcC
Confidence 6999999999999999999999999999976432 34454444321 2344456778899999999999
Q ss_pred ChhhhhhhhHhhhcccCcccccccCCCCCCCCCCCCCCCcCcCcHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHhh
Q psy16761 143 DPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLI 222 (261)
Q Consensus 143 ~~~E~~lLkai~l~~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~lq~~~~~~L~~~~~~~~~~~~~Rf~~LL~~ 222 (261)
|.+||+|||||+||||| ++|++++.+|+++|+++..+|++||..+||++|.||++||++
T Consensus 173 d~~E~alLkAIvLfnpd---------------------~~gL~~~~~Ve~lqe~~~~aL~~y~~~~~p~~~~Rf~kLL~~ 231 (269)
T 3u9q_A 173 DDSDLAIFIAVIILSGD---------------------RPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQK 231 (269)
T ss_dssp CHHHHHHHHHHHHTCTT---------------------STTCSCHHHHHHHHHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCC---------------------CCCCccHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHH
Confidence 99999999999999999 999999999999999999999999999999999999999999
Q ss_pred cccccCCCcccchhhh-cccccCCCCcHHHHHHHHHhc
Q psy16761 223 LPRLKSIPSLVLEELF-FRNIIGHNTTIKKTIWHMYKN 259 (261)
Q Consensus 223 Lp~Lr~~~~~~~e~l~-f~~~~g~~~~i~~ll~eml~~ 259 (261)
||.||+++..+++.++ |.+..| ++|+++|+.||+++
T Consensus 232 Lp~LR~i~~~~~~~l~~~k~~~~-~~~~~~Ll~Em~~~ 268 (269)
T 3u9q_A 232 MTDLRQIVTEHVQLLQVIKKTET-DMSLHPLLQEIYKD 268 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCS-SCCCCHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHHHHhCcCC-CCCcCHHHHHHHhh
Confidence 9999999999999885 556789 99999999999974
No 32
>3ipq_A Oxysterols receptor LXR-alpha; LXR homodimer, LXR signaling, alternative DNA-binding, metal-binding, nucleus, polymorphism, receptor transcription; HET: 965; 2.00A {Homo sapiens} PDB: 3ips_A* 3ipu_A* 3fc6_B* 3fal_B* 1uhl_B* 2acl_B* 1upv_A* 1upw_A* 1p8d_A* 1pq9_A* 1pq6_A* 1pqc_A* 3kfc_A* 4dk7_A* 4dk8_A* 3l0e_A*
Probab=99.96 E-value=1.3e-29 Score=224.04 Aligned_cols=164 Identities=14% Similarity=0.174 Sum_probs=146.8
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCccccccccccc-------hhH-HHHHHHHHHHHHHHHhcCCCh
Q psy16761 73 KTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESCKSRH-------VDI-EEEVIRFQSVLNEFKVLNIDP 144 (261)
Q Consensus 73 ~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~~~~~ll~~~~~~~-------~~~-~~~~~~l~~~~~~l~~L~l~~ 144 (261)
.|+|..|+.+||+.+|+.+|.++++++.|+++.+ +.+.+.+++|... .++ .+.++.+.+++.+|++|++|.
T Consensus 111 lP~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~-~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~l~~~~~~l~~L~ld~ 189 (283)
T 3ipq_A 111 LPGFLQLSREDQIALLKTSAIEVMLLETSRRYNP-GSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLND 189 (283)
T ss_dssp STTGGGSCHHHHHHHHHHHHHHHHHHHHHHTEET-TTTEEEETTTEEECHHHHHHTTCCHHHHHHHHHHHHHHHHHTCCH
T ss_pred CcChhhCCHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCeEEeCCCceecHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 6999999999999999999999999999987754 3345566666432 112 256778889999999999999
Q ss_pred hhhhhhhHhhhcccCcccccccCCCCCCCCCCCCCCCcCcCcHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHhhcc
Q psy16761 145 YEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILP 224 (261)
Q Consensus 145 ~E~~lLkai~l~~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~lq~~~~~~L~~~~~~~~~~~~~Rf~~LL~~Lp 224 (261)
+||+|||||+||||| ++|+++...|+++|+++..+|.+||..+||+++.||++||++||
T Consensus 190 ~E~~lLkAIvL~npd---------------------~~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~Lp 248 (283)
T 3ipq_A 190 AEFALLIAISIFSAD---------------------RPNVQDQLQVERLQHTYVEALHAYVSIHHPHDRLMFPRMLMKLV 248 (283)
T ss_dssp HHHHHHHHHHHTCTT---------------------STTCSCHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC---------------------CCCCCcHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHH
Confidence 999999999999999 99999999999999999999999999999999999999999999
Q ss_pred cccCCCcccchhhhcccccCCCCcHHHHHHHHHhcC
Q psy16761 225 RLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 260 (261)
Q Consensus 225 ~Lr~~~~~~~e~l~f~~~~g~~~~i~~ll~eml~~~ 260 (261)
.||+++.+.+|++||.++.| . ++++|+.||+..+
T Consensus 249 ~Lr~l~~~~~e~l~~~k~~~-~-~~~~Ll~Em~~~~ 282 (283)
T 3ipq_A 249 SLRTLSSVHSEQVFALRLQD-K-KLPPLLSEIWDVH 282 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-C-CCCHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHhhhcCCC-C-CCChHHHHHhcCC
Confidence 99999999999999999988 4 9999999999754
No 33
>1n83_A Nuclear receptor ROR-alpha; three-layered alpha helical sandwich, transcription regulation, nuclear protein, DNA binding, lipid binding protein; HET: CLR; 1.63A {Homo sapiens} SCOP: a.123.1.1 PDB: 1s0x_A*
Probab=99.96 E-value=7.4e-30 Score=224.16 Aligned_cols=164 Identities=13% Similarity=0.101 Sum_probs=144.0
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccccc------chhHHHHHHHHHHHHHHHHhcCCChhh
Q psy16761 73 KTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESCKSR------HVDIEEEVIRFQSVLNEFKVLNIDPYE 146 (261)
Q Consensus 73 ~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~~~~~ll~~~~~~------~~~~~~~~~~l~~~~~~l~~L~l~~~E 146 (261)
.|+|..|+.+||+.++|.+|.++++++.|+++.+. .+.++++.+.. ..+..+.++.+.+++.+|++|++|.+|
T Consensus 88 lP~F~~L~~~DQi~LLk~~~~el~lL~~a~~~~~~-~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~~l~~L~ld~~E 166 (270)
T 1n83_A 88 IDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQ-NNTVYFDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDE 166 (270)
T ss_dssp STTTTTSCHHHHHHHHHHHHHHHHHHHGGGGEETT-TTEEEETTEEECGGGGGGGSCHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred CCChhhcCHHHHHHHHHHhHHHHHHHHHHHHhcCC-CCeEEeCCccccHHHHHhcCHHHHHHHHHHHHHHHHHHCCCHHH
Confidence 69999999999999999999999999999997654 33444432211 124567788899999999999999999
Q ss_pred hhhhhHhhhcccCcccccccCCCCCCCCCCCCCCCcCcCcHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHhhcccc
Q psy16761 147 YDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRL 226 (261)
Q Consensus 147 ~~lLkai~l~~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~lq~~~~~~L~~~~~~~~~~~~~Rf~~LL~~Lp~L 226 (261)
|+|||||+||||| ++|+++.+.|+++|+++..+|++||..+|| +|.||++||++||.|
T Consensus 167 ~~lLkAivLfnpd---------------------~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~-~~~Rf~~LL~~L~~L 224 (270)
T 1n83_A 167 IALFSAFVLMSAD---------------------RSWLQEKVKIEKLQQKIQLALQHVLQKNHR-EDGILTKLICKVSTL 224 (270)
T ss_dssp HHHHHHHHHSCTT---------------------STTCSCHHHHHHHHHHHHHHHHHHHHHHCT-TSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC---------------------CCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-chhHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999999999987 689999999999999
Q ss_pred cCCCcccchhhhcccccCCC----CcHHHHHHHHHhcC
Q psy16761 227 KSIPSLVLEELFFRNIIGHN----TTIKKTIWHMYKNA 260 (261)
Q Consensus 227 r~~~~~~~e~l~f~~~~g~~----~~i~~ll~eml~~~ 260 (261)
|+++.+.++++++.+++| + +|+++|+.||+.++
T Consensus 225 r~l~~~~~e~l~~~~~~~-~~~~~~~~~~Ll~Em~~~~ 261 (270)
T 1n83_A 225 RALCGRHTEKLMAFKAIY-PDIVRLHFPPLYKELFTSE 261 (270)
T ss_dssp HHHHHHHHHHHHHHHHHC-HHHHHHHSCHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHhcC-cccccCCcCHHHHHHhCCC
Confidence 999999999999999999 5 48999999999764
No 34
>2o4j_A Vitamin D3 receptor; nuclear receptor-ligand complex, hormone/growth factor receptor complex; HET: VD4; 1.74A {Rattus norvegicus} SCOP: a.123.1.1 PDB: 1rk3_A* 1rjk_A* 1rkh_A* 1rkg_A* 2o4r_A*
Probab=99.96 E-value=7.5e-30 Score=226.48 Aligned_cols=165 Identities=17% Similarity=0.127 Sum_probs=147.1
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCcccccc-ccccc-------hhHH-HHHHHHHHHHHHHHhcCCC
Q psy16761 73 KTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVES-CKSRH-------VDIE-EEVIRFQSVLNEFKVLNID 143 (261)
Q Consensus 73 ~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~~~~~ll~~-~~~~~-------~~~~-~~~~~l~~~~~~l~~L~l~ 143 (261)
.|+|..|+.+||+.+||.+|.++++++.|+++.. +.+.++++ +|... .++. +.++.+.+++.+|++|++|
T Consensus 82 iP~F~~L~~~DQi~LLk~~~~el~lL~~a~~~~~-~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~l~~L~ld 160 (292)
T 2o4j_A 82 IPGFRDLTSDDQIVLLKSSAIEVIMLRSNQSFTM-DDMSWDCGSQDYKYDVTDVSKAGHTLELIEPLIKFQVGLKKLNLH 160 (292)
T ss_dssp STTGGGSCHHHHHHHHHHHHHHHHHHHGGGTEET-TTTEEECSSGGGEECHHHHHTTTCCHHHHHHHHHHHHHHHHTCCC
T ss_pred CcchhhccHHHHHHHHHHhHHHHHHHHHHHHhcC-CCCeEEecCCCeEEcHHHHHhcCCcHHHHHHHHHHHHHHHHHcCC
Confidence 5999999999999999999999999999987654 44555555 24321 1333 6677888999999999999
Q ss_pred hhhhhhhhHhhhcccCcccccccCCCCCCCCCCCCCCCcCcCcHHHHHHHHHHHHHHHHHHHHhcCC--CCccHHHHHHh
Q psy16761 144 PYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYP--SQPTRFCKIQL 221 (261)
Q Consensus 144 ~~E~~lLkai~l~~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~lq~~~~~~L~~~~~~~~~--~~~~Rf~~LL~ 221 (261)
.+||+|||||+||||| ++|+++...|+++|++++.+|++||..+|| +++.||++||+
T Consensus 161 ~~E~~lLkAIvLfnpd---------------------~~gL~~~~~Ve~lq~~~~~aL~~y~~~~~p~~~~~~Rf~~LL~ 219 (292)
T 2o4j_A 161 EEEHVLLMAICIVSPD---------------------RPGVQDAKLVEAIQDRLSNTLQTYIRCRHPPPGSHQLYAKMIQ 219 (292)
T ss_dssp HHHHHHHHHHHHSCTT---------------------STTCSCHHHHHHHHHHHHHHHHHHHHHHSCTTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC---------------------CCCCccHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHH
Confidence 9999999999999999 999999999999999999999999999999 88999999999
Q ss_pred hcccccCCCcccchhhhccccc--CCCCcHHHHHHHHHhcC
Q psy16761 222 ILPRLKSIPSLVLEELFFRNII--GHNTTIKKTIWHMYKNA 260 (261)
Q Consensus 222 ~Lp~Lr~~~~~~~e~l~f~~~~--g~~~~i~~ll~eml~~~ 260 (261)
+||.||+++.+.++.++|.+++ | ++++++|+.||+.++
T Consensus 220 ~L~~Lr~l~~~~~e~l~~~~~~~~~-~~~~~~Ll~Eml~~~ 259 (292)
T 2o4j_A 220 KLADLRSLNEEHSKQYRSLSFQPEN-SMKLTPLVLEVFGNE 259 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSHHH-HTTSCHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHhhccccC-CCChhHHHHHHHcCC
Confidence 9999999999999999999994 6 789999999999764
No 35
>2r40_D Ecdysone receptor, 20-hydroxy-ecdysone receptor; nuclear receptor ligand-binding domain, anti-parallel alpha- sandwich, ecdysone receptor, ECR, gene regulation; HET: FLC 20E EPH; 2.40A {Heliothis virescens} SCOP: a.123.1.1 PDB: 1r1k_D* 3ixp_D* 1r20_D*
Probab=99.96 E-value=2.5e-29 Score=220.29 Aligned_cols=163 Identities=15% Similarity=0.142 Sum_probs=148.6
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCccccccccccc-------hhHHHHHHHHHHHHHHHHhcCCChh
Q psy16761 73 KTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESCKSRH-------VDIEEEVIRFQSVLNEFKVLNIDPY 145 (261)
Q Consensus 73 ~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~~~~~ll~~~~~~~-------~~~~~~~~~l~~~~~~l~~L~l~~~ 145 (261)
.|+|..|+.+||+.++|.+|.++++++.|+++.+. .+.+++++|... .++.+.++.+.+++.+|++|++|.+
T Consensus 91 lp~F~~L~~~DQi~LLk~~~~el~~L~~a~~~~~~-~~~l~~~~g~~~~~~~~~~~g~~~~~~~l~~~~~~l~~L~ld~~ 169 (266)
T 2r40_D 91 LPGFAKISQSDQITLLKACSSEVMMLRVARRYDAA-TDSVLFANNQAYTRDNYRKAGMAYVIEDLLHFCRCMYSMMMDNV 169 (266)
T ss_dssp STTGGGSCHHHHHHHHHHHHHHHHHHHHHTTEETT-TTEEECTTSCEECHHHHHHTTCHHHHHHHHHHHHHHHTTTCCHH
T ss_pred CcccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCeEEecCCceecHHHHhhcCHHHHHHHHHHHHHHHhcccCCHH
Confidence 79999999999999999999999999999997653 455677776533 2445678889999999999999999
Q ss_pred hhhhhhHhhhcccCcccccccCCCCCCCCCCCCCCCcCcCcHHHHHHHHHHHHHHHHHHHHhcC---CCCccHHHHHHhh
Q psy16761 146 EYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVY---PSQPTRFCKIQLI 222 (261)
Q Consensus 146 E~~lLkai~l~~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~lq~~~~~~L~~~~~~~~---~~~~~Rf~~LL~~ 222 (261)
||+|||||+||| | ++|+++...|+++|+++..+|++||..+| |++|.||++||++
T Consensus 170 E~~lLkAivL~n-d---------------------~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~~~Rf~~LL~~ 227 (266)
T 2r40_D 170 HYALLTAIVIFS-D---------------------RPGLEQPLLVEEIQRYYLNTLRVYILNQNSASPRCAVIFGKILGI 227 (266)
T ss_dssp HHHHHHHHHHTS-C---------------------CTTCSCHHHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHH
T ss_pred HHHHHhhheeec-C---------------------CCCCcCHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHH
Confidence 999999999999 9 89999999999999999999999999998 7889999999999
Q ss_pred cccccCCCcccchhhhcccccCCCCcHHHHHHHHHhcC
Q psy16761 223 LPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 260 (261)
Q Consensus 223 Lp~Lr~~~~~~~e~l~f~~~~g~~~~i~~ll~eml~~~ 260 (261)
||.||+++.+.+|+++|.+.+| +++++|+.||+..+
T Consensus 228 L~~Lr~l~~~~~e~l~~~~~~~--~~~~~Ll~Em~~~~ 263 (266)
T 2r40_D 228 LTEIRTLGMQNSNMCISLKLKN--RKLPPFLEEIWDVA 263 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT--CCCCHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--CCccHHHHHHhCCC
Confidence 9999999999999999999999 49999999999764
No 36
>1xvp_B Orphan nuclear receptor NR1I3; CAR, RXR, citco, SRC1, DNA binding protein; HET: F15 CID; 2.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xv9_B* 1xnx_A* 1xls_E*
Probab=99.96 E-value=9.4e-30 Score=220.37 Aligned_cols=160 Identities=17% Similarity=0.142 Sum_probs=139.5
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCccccccccccc-------hhHH-HHHHHHHHHHHHHHhcCCCh
Q psy16761 73 KTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESCKSRH-------VDIE-EEVIRFQSVLNEFKVLNIDP 144 (261)
Q Consensus 73 ~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~~~~~ll~~~~~~~-------~~~~-~~~~~l~~~~~~l~~L~l~~ 144 (261)
.|+|..|+.+||+.++|.+|.++++++.|+++...+ +.++. ++... .++. +.++.+.+++.+|++|++|.
T Consensus 77 lp~F~~L~~~DQ~~LLk~~~~el~~l~~a~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~L~ld~ 154 (246)
T 1xvp_B 77 LPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQT-QNFLC-GPLRYTIEDGARVGFQVEFLELLFHFHGTLRKLQLQE 154 (246)
T ss_dssp CHHHHHSCHHHHHHHHHHHHHHHHHHHHGGGEETTT-TEEEC-SSCEECHHHHHHHTCCHHHHHHHHHHHHHHHHTCCCH
T ss_pred CcchhhCCHHHHHHHHHhhHHHHHHHHHHHHhcccc-CeEee-CCeeecHHHHHHccccHHHHHHHHHHHHHHHHHcCCH
Confidence 699999999999999999999999999999876543 23322 22111 1222 55678889999999999999
Q ss_pred hhhhhhhHhhhcccCcccccccCCCCCCCCCCCCCCCcCcCcHHHHHHHHHHHHHHHHHHHHhc--CCCCccHHHHHHhh
Q psy16761 145 YEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTV--YPSQPTRFCKIQLI 222 (261)
Q Consensus 145 ~E~~lLkai~l~~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~lq~~~~~~L~~~~~~~--~~~~~~Rf~~LL~~ 222 (261)
+||+|||||+||||| ++|+++.+.|+++|++++.+|.+||..+ +|+++.||++||++
T Consensus 155 ~E~~lLkAivL~~pd---------------------~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~~rf~~LL~~ 213 (246)
T 1xvp_B 155 PEYVLLAAMALFSPD---------------------RPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLYAKLLGL 213 (246)
T ss_dssp HHHHHHHHHHHSCSS---------------------STTCSCHHHHHHHHHHHHHHHHHHHHTCSSCCSCSSHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC---------------------CCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHH
Confidence 999999999999999 9999999999999999999999999844 67899999999999
Q ss_pred cccccCCCcccchhhhcccccCCCCcHHHHHHHHHh
Q psy16761 223 LPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 258 (261)
Q Consensus 223 Lp~Lr~~~~~~~e~l~f~~~~g~~~~i~~ll~eml~ 258 (261)
||.||+++.+++|++++. .| .+|+++|+.||+.
T Consensus 214 L~~Lr~i~~~~~e~l~~~--~~-~~~~~~Ll~Em~~ 246 (246)
T 1xvp_B 214 LAELRSINEAYGYQIQHI--QG-LSAMMPLLQEICS 246 (246)
T ss_dssp HHHHHHHHHHHHHHHHHS--TT-HHHHCHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHH--hC-CCCccHHHHHhcC
Confidence 999999999999999995 69 9999999999983
No 37
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=99.96 E-value=3.6e-29 Score=235.02 Aligned_cols=165 Identities=26% Similarity=0.412 Sum_probs=146.5
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCccccccccccc-------hhHHHHHHHH-HHHHHHHHhcCCCh
Q psy16761 73 KTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESCKSRH-------VDIEEEVIRF-QSVLNEFKVLNIDP 144 (261)
Q Consensus 73 ~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~~~~~ll~~~~~~~-------~~~~~~~~~l-~~~~~~l~~L~l~~ 144 (261)
.|+|..|+.+||+.+||..|.++++++.++++...+.. +++++|..+ .++.+.++.+ .+++.+|++|++|+
T Consensus 291 iP~F~~L~~~DQi~LLK~~w~elliL~~a~rs~~~~~~-~ll~~g~~i~~~~~~~~~~~~~~~~il~~lv~~l~~L~ld~ 369 (467)
T 3dzy_A 291 IPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG-ILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDK 369 (467)
T ss_dssp STTSTTSCHHHHHHHHHHHHHHHHHHHHHHHTSSSTTB-CCCSSSCCCBTHHHHTTTCHHHHHHHHHHTHHHHHHHTCCH
T ss_pred CcchhcCCHHHHHHHHHhHHHHHHHHHHHHHhccCCCc-eEecCCceechhhhhhhcchHHHHHHHHHHHHHHHHhcCCH
Confidence 79999999999999999999999999999999875544 455665432 2233444444 48999999999999
Q ss_pred hhhhhhhHhhhcccCcccccccCCCCCCCCCCCCCCCcCcCcHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHhhcc
Q psy16761 145 YEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILP 224 (261)
Q Consensus 145 ~E~~lLkai~l~~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~lq~~~~~~L~~~~~~~~~~~~~Rf~~LL~~Lp 224 (261)
+||+|||||+||||| ++||++.++|+++|++++.+|.+|+..+||+++.||++||++||
T Consensus 370 ~E~~lLkAIvLfnpd---------------------~~gL~~~~~Ve~lQe~~~~aL~~Y~~~~~p~~p~Rf~kLLl~Lp 428 (467)
T 3dzy_A 370 TELGCLRAIVLFNPD---------------------SKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLP 428 (467)
T ss_dssp HHHHHHHHHHHSCTT---------------------STTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHTHHH
T ss_pred HHHHHHHHHHHhCcC---------------------CCCCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 999999999999999 99999999999999999999999999999999999999999999
Q ss_pred cccCCCcccchhhhcccccCCCCcHHHHHHHHHhcC
Q psy16761 225 RLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 260 (261)
Q Consensus 225 ~Lr~~~~~~~e~l~f~~~~g~~~~i~~ll~eml~~~ 260 (261)
.||+++.+.+|++||.+++| .+||++|+.|||+++
T Consensus 429 ~LRsi~~~~~E~l~~~kl~g-~v~i~~Ll~EMl~a~ 463 (467)
T 3dzy_A 429 ALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEMLEAP 463 (467)
T ss_dssp HHHHHHHHHHHTTTTTSTTS-CCCCCSHHHHCC---
T ss_pred HHHHHHHHHHHHHHHhhccC-CccHHHHHHHHHcCC
Confidence 99999999999999999999 999999999999875
No 38
>1nrl_A Orphan nuclear receptor PXR; PXR, xenobiotic, SRC-1, ligand binding domain, transcription; HET: SRL; 2.00A {Homo sapiens} SCOP: a.123.1.1 PDB: 1ilh_A* 1ilg_A* 1m13_A* 2qnv_A* 3r8d_A* 3ctb_A 3ctc_A 3hvl_A* 1skx_A* 2o9i_A*
Probab=99.96 E-value=8.4e-30 Score=228.28 Aligned_cols=163 Identities=18% Similarity=0.134 Sum_probs=146.2
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCccccccccccc------hhHH-HHHHHHHHHHHHHHhcCCChh
Q psy16761 73 KTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESCKSRH------VDIE-EEVIRFQSVLNEFKVLNIDPY 145 (261)
Q Consensus 73 ~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~~~~~ll~~~~~~~------~~~~-~~~~~l~~~~~~l~~L~l~~~ 145 (261)
.|+|..|+.+||+.+||.+|.++++++.|+++.+.+ +.+++++ ... .++. +.++.+.+++.+|++|++|.+
T Consensus 143 lP~F~~L~~~DQi~LLk~~w~el~lL~~a~~~~~~~-~~~l~~~-~~~~~~~~~~g~~~~~~~~i~~~~~~l~~L~ld~~ 220 (316)
T 1nrl_A 143 ISYFRDLPIEDQISLLKGAAFELCQLRFNTVFNAET-GTWECGR-LSYCLEDTAGGFQQLLLEPMLKFHYMLKKLQLHEE 220 (316)
T ss_dssp CHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTEETTT-TEEEETT-EEEEECCCSSCHHHHTTSHHHHHHHHHHHTCCCHH
T ss_pred CcchhhcCHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CeEEECC-EeecHHHHhccccHHHHHHHHHHHHHHHHhCCCHH
Confidence 599999999999999999999999999999876533 3344433 111 2444 566788899999999999999
Q ss_pred hhhhhhHhhhcccCcccccccCCCCCCCCCCCCCCCcCcCcHHHHHHHHHHHHHHHHHHHHhcCC--CCccHHHHHHhhc
Q psy16761 146 EYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYP--SQPTRFCKIQLIL 223 (261)
Q Consensus 146 E~~lLkai~l~~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~lq~~~~~~L~~~~~~~~~--~~~~Rf~~LL~~L 223 (261)
||+|||||+||||| ++||++...|+++|++|+.+|.+||..+|| +++.||++||++|
T Consensus 221 E~alLkAIvLfnpd---------------------~~gL~~~~~Ve~lqe~~~~aL~~y~~~~~p~~~~~~RF~kLLl~L 279 (316)
T 1nrl_A 221 EYVLMQAISLFSPD---------------------RPGVLQHRVVDQLQEQFAITLKSYIECNRPQPAHRFLFLKIMAML 279 (316)
T ss_dssp HHHHHHHHHHTCTT---------------------STTCSCHHHHHHHHHHHHHHHHHHHHHHCCSGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC---------------------CCCCccHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Confidence 99999999999999 999999999999999999999999999999 7899999999999
Q ss_pred ccccCCCcccchhhhcccccCCCCcHHHHHHHHHhcC
Q psy16761 224 PRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 260 (261)
Q Consensus 224 p~Lr~~~~~~~e~l~f~~~~g~~~~i~~ll~eml~~~ 260 (261)
|.||+++.+.+|++||.+.+| + |+++|+.||+.++
T Consensus 280 p~LR~l~~~~~e~l~~~k~~~-~-~i~~Ll~Eml~~~ 314 (316)
T 1nrl_A 280 TELRSINAQHTQRLLRIQDIH-P-FATPLMQELFGIT 314 (316)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS-C-CCCHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHhcC-C-chHHHHHHHHcCC
Confidence 999999999999999999999 7 9999999999875
No 39
>2hc4_A Vitamin D receptor; alpha helical sandwich, gene regulation; HET: VDX; 2.20A {Danio rerio} PDB: 2hbh_A* 2hcd_A* 3dr1_A* 3o1d_A* 3o1e_A*
Probab=99.96 E-value=4.5e-29 Score=222.45 Aligned_cols=165 Identities=16% Similarity=0.118 Sum_probs=146.3
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCccccccc-cccc-------hhH-HHHHHHHHHHHHHHHhcCCC
Q psy16761 73 KTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESC-KSRH-------VDI-EEEVIRFQSVLNEFKVLNID 143 (261)
Q Consensus 73 ~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~~~~~ll~~~-~~~~-------~~~-~~~~~~l~~~~~~l~~L~l~ 143 (261)
.|+|..|+.+||+.+||.+|.++++++.|++.. .+.+.+++++ +... .++ .+.++.+.+++.+|++|++|
T Consensus 125 iP~F~~L~~~DQi~LLk~~w~el~lL~~a~~~~-~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~l~~L~ld 203 (302)
T 2hc4_A 125 IPGFRDLTAEDQIALLKSSAIEIIMLRSNQSFS-LEDMSWSCGGPDFKYCINDVTKAGHTLELLEPLVKFQVGLKKLKLH 203 (302)
T ss_dssp STTTTTSCHHHHHHHHHHHHHHHHHHHGGGTEE-TTTTEEECSSSTTEECHHHHHTTTCCHHHHHHHHHHHHHHHTTCCC
T ss_pred CCChhhCCHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCeEEecCCCeeecHHHHHHccCcHHHHHHHHHHHHHHHHhcCC
Confidence 799999999999999999999999999997543 3444455543 2211 122 45678889999999999999
Q ss_pred hhhhhhhhHhhhcccCcccccccCCCCCCCCCCCCCCCcCcCcHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHhhc
Q psy16761 144 PYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLIL 223 (261)
Q Consensus 144 ~~E~~lLkai~l~~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~lq~~~~~~L~~~~~~~~~~~~~Rf~~LL~~L 223 (261)
.+||+|||||+||||| ++|+++...|+++|++++.+|.+||..+||+++.||++||++|
T Consensus 204 ~~E~alLkAIvLfnpd---------------------~~gL~~~~~Ve~lqe~~~~aL~~y~~~~~p~~~~RF~~LLl~L 262 (302)
T 2hc4_A 204 EEEHVLLMAICLLSPD---------------------RPGVQDHVRIEALQDRLCDVLQAYIRIQHPGGRLLYAKMIQKL 262 (302)
T ss_dssp HHHHHHHHHHHHTCSC---------------------STTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC---------------------CCCCcCHHHHHHHHHHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 9999999999999999 9999999999999999999999999999999999999999999
Q ss_pred ccccCCCcccchhhhcccccCCC--CcHHHHHHHHHhcC
Q psy16761 224 PRLKSIPSLVLEELFFRNIIGHN--TTIKKTIWHMYKNA 260 (261)
Q Consensus 224 p~Lr~~~~~~~e~l~f~~~~g~~--~~i~~ll~eml~~~ 260 (261)
|.||+++.+.++++++.++.| . +++++|+.||+.++
T Consensus 263 ~~Lr~l~~~~~e~l~~~~~~~-~~~~~~~~Ll~Em~~~~ 300 (302)
T 2hc4_A 263 ADLRSLNEEHSKQYRSLSFQP-EHSMQLTPLVLEVFGSE 300 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHCH-HHHTTSCHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHHHHhhccC-CCCCCccHHHHHHHcCC
Confidence 999999999999999999987 5 89999999999875
No 40
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=99.96 E-value=1.1e-28 Score=229.05 Aligned_cols=167 Identities=16% Similarity=0.162 Sum_probs=145.6
Q ss_pred HHHhh---ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCccccccccccc----------hhHHHHHHHHHHHH
Q psy16761 68 AITLF---KTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESCKSRH----------VDIEEEVIRFQSVL 134 (261)
Q Consensus 68 aivlf---~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~~~~~ll~~~~~~~----------~~~~~~~~~l~~~~ 134 (261)
.+|-| .|+|..|+.+||+.+||.+|.|+++++.++.... +..+...|... ..+.+.++.+++++
T Consensus 237 ~~VewAK~iP~F~~L~~~DQi~LLk~~w~Ell~L~~a~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~f~ 313 (419)
T 3dzy_D 237 EITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNK---DGVLISEGQGFMTREFLKSLRKPFGDFMEPKFEFA 313 (419)
T ss_dssp HHHHHHTTSTTTTTSCHHHHHHHHHHHHHHHHHHHHGGGBCS---SEEEEGGGTEEEEHHHHHSSSGGGSGGGHHHHHHH
T ss_pred HHHHHhccCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHhcC---CCceeecCcccccHHHHHhhhhhHHHHHHHHHHHH
Confidence 35555 7999999999999999999999999999966533 33333333211 23456677889999
Q ss_pred HHHHhcCCChhhhhhhhHhhhcccCcccccccCCCCCCCCCCCCCCCcCcCcHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q psy16761 135 NEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPT 214 (261)
Q Consensus 135 ~~l~~L~l~~~E~~lLkai~l~~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~lq~~~~~~L~~~~~~~~~~~~~ 214 (261)
.+|++|++|++||+|||||+||||| ++||+++++|+++|++++.+|.+|+..+||+++.
T Consensus 314 ~~l~~L~ld~~E~alLkAivLf~pD---------------------~~gL~~~~~Ve~lQe~~~~aL~~yi~~~~p~~~~ 372 (419)
T 3dzy_D 314 VKFNALELDDSDLAIFIAVIILSGD---------------------RPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQ 372 (419)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHSCTT---------------------STTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhCCC---------------------CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCChhh
Confidence 9999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccCCCcccchhh-hcccccCCCCcHHHHHHHHHhc
Q psy16761 215 RFCKIQLILPRLKSIPSLVLEEL-FFRNIIGHNTTIKKTIWHMYKN 259 (261)
Q Consensus 215 Rf~~LL~~Lp~Lr~~~~~~~e~l-~f~~~~g~~~~i~~ll~eml~~ 259 (261)
||++||++||+||+++..+++.+ +|.+..| ++++++|+.||+++
T Consensus 373 rf~kLLl~Lp~LR~i~~~~~~~l~~~k~~~~-~~~l~~Ll~Em~~d 417 (419)
T 3dzy_D 373 LFAKLLQKMTDLRQIVTEHVQLLQVIKKTET-DMSLHPLLQEIYKD 417 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCS-CCCCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-CCCccHHHHHHHHh
Confidence 99999999999999999999988 5556788 99999999999974
No 41
>3vhv_A Mineralocorticoid receptor; nuclear receptor, transcription factor, activating mutation, hypertension, non-steroidal antagonist; HET: LD1 LD2; 1.35A {Homo sapiens} SCOP: a.123.1.1 PDB: 2aax_A* 2aa6_A* 2ab2_A* 2aa2_A* 2aa5_A* 2aa7_A* 2a3i_A* 1y9r_A* 1ya3_A* 2oax_A* 2abi_A* 2q1h_A* 2q1v_A* 2q3y_A* 3ry9_A* 4fne_A* 4fn9_A*
Probab=99.96 E-value=1.2e-29 Score=221.66 Aligned_cols=165 Identities=15% Similarity=0.128 Sum_probs=142.5
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCC-ccccccccccc-------hhHHHHHHHHHHHHHHHHhcCCCh
Q psy16761 73 KTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDL-GELVESCKSRH-------VDIEEEVIRFQSVLNEFKVLNIDP 144 (261)
Q Consensus 73 ~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~~~-~~ll~~~~~~~-------~~~~~~~~~l~~~~~~l~~L~l~~ 144 (261)
.|+|..|+.+||+.++|++|.++++++.|+++++.+. +.+++++|... .++.+.++.+.+++.+|++|++|.
T Consensus 63 lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~rs~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld~ 142 (260)
T 3vhv_A 63 LPGFKNLPLEDQITLIQYSWMSLLSFALSWRSYKHTNSQFLYFAPDLVFNEEKMHQSAMYELCQGMHQISLQFVRLQLTF 142 (260)
T ss_dssp STTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEETTEEECHHHHHHTTCHHHHHHHHHHHHHHHHHTCCH
T ss_pred ChHHhcCCHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCeEEecCCccccHHHhhcccHHHHHHHHHHHHHHHHHcCCCH
Confidence 5999999999999999999999999999999876543 35566666432 334566788899999999999999
Q ss_pred hhhhhhhHhhhccc-CcccccccCCCCCCCCCCCCCCCcCcCcHHHHHHHHHHHHHHHHHHHHhcCCCC---ccHHHHHH
Q psy16761 145 YEYDYIRAITLFKT-VIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQ---PTRFCKIQ 220 (261)
Q Consensus 145 ~E~~lLkai~l~~p-d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~lq~~~~~~L~~~~~~~~~~~---~~Rf~~LL 220 (261)
+||+|||||+|||| | ++|+++..+|+++|++++.+|.+||..+||+. +.||++||
T Consensus 143 ~E~~lLkAIvLfnp~d---------------------~~gL~~~~~ve~lqe~~~~aL~~y~~~~~~~~~~~~~RF~~LL 201 (260)
T 3vhv_A 143 EEYTIMKVLLLLSTIP---------------------KDGLKSQAAFEEMRTNYIKELRKMVTKCPNNSGQSWQRFYQLT 201 (260)
T ss_dssp HHHHHHHHHHHTSEEE---------------------TTCCTTHHHHHHHHHHHHHHHHHHHHC-----CCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcC---------------------CCCCcCHHHHHHHHHHHHHHHHHHHHhcCCCCCcHhhHHHHHH
Confidence 99999999999999 8 89999999999999999999999999998865 69999999
Q ss_pred hhcccccCCCcccchhhhcccc---cCCCCcHHHHHHHHHhc
Q psy16761 221 LILPRLKSIPSLVLEELFFRNI---IGHNTTIKKTIWHMYKN 259 (261)
Q Consensus 221 ~~Lp~Lr~~~~~~~e~l~f~~~---~g~~~~i~~ll~eml~~ 259 (261)
++||.||+++.+.+|++||... .+ .+++++++.||+.+
T Consensus 202 ~~Lp~Lr~l~~~~~e~lff~~~~~~~~-~~~~p~Ll~Ei~~~ 242 (260)
T 3vhv_A 202 KLLDSMHDLVSDLLEFCFYTFRESHAL-KVEFPAMLVEIISD 242 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHH-TCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc-cCCCcHHHHHHHhc
Confidence 9999999999999999997653 57 88999999999974
No 42
>1osh_A BIle acid receptor; nuclear receptor, ligand binding domain, transcription; HET: FEX; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 3l1b_A* 3bej_A* 3fli_A* 3hc5_A* 3rvf_A* 3dct_A* 3dcu_A* 3ruu_A* 3rut_A* 3olf_A* 3okh_A* 3fxv_A* 3oki_A* 3omk_A* 3omm_A* 3oof_A* 3ook_A* 3hc6_A* 3p89_A* 3p88_A* ...
Probab=99.95 E-value=3.4e-29 Score=215.01 Aligned_cols=164 Identities=17% Similarity=0.175 Sum_probs=140.4
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCC--ccccccccccchhH-HHHHHHHHHHHHHHHhcCCChhhhhh
Q psy16761 73 KTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDL--GELVESCKSRHVDI-EEEVIRFQSVLNEFKVLNIDPYEYDY 149 (261)
Q Consensus 73 ~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~~~--~~ll~~~~~~~~~~-~~~~~~l~~~~~~l~~L~l~~~E~~l 149 (261)
.|+|..|+.+||+.++|.+|.++++++.|+++..... +..+.++.....++ .+.++.+.+++.+|++|++|.+||+|
T Consensus 65 lp~F~~L~~~DQ~~LLk~~~~e~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~L~ld~~E~~l 144 (232)
T 1osh_A 65 LPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLPSGHSDLLEERIRNSGISDEYITPMFSFYKSIGELKMTQEEYAL 144 (232)
T ss_dssp STTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHTSSCCTTTHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred CCchhhCCHHHHHHHHHHhHHHHHHHHHHHHhCCccCCCCceecHHHHHHcCCcHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 6999999999999999999999999999987532211 01111111101122 23456778899999999999999999
Q ss_pred hhHhhhcccCcccccccCCCCCCCCCCCCCCCcCcCcHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHhhcccccCC
Q psy16761 150 IRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSI 229 (261)
Q Consensus 150 Lkai~l~~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~lq~~~~~~L~~~~~~~~~~~~~Rf~~LL~~Lp~Lr~~ 229 (261)
||||+||||| ++|+++...|+++|+++..+|.+||..+||++|.||++||+++|.||++
T Consensus 145 LkaivL~~pd---------------------~~gL~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~Rf~~LL~~L~~Lr~l 203 (232)
T 1osh_A 145 LTAIVILSPD---------------------RQYIKDREAVEKLQEPLLDVLQKLCKIHQPENPQHFACLLGRLTELRTF 203 (232)
T ss_dssp HHHHHHTCTT---------------------CTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHTH
T ss_pred HHHHHHhCCC---------------------CCCCCChHHHHHHHHHHHHHHHHHHHHHCCCchhHHHHHHHHHHHHHHH
Confidence 9999999999 8999999999999999999999999999999999999999999999999
Q ss_pred CcccchhhhcccccCCCCcHHHHHHHHHhc
Q psy16761 230 PSLVLEELFFRNIIGHNTTIKKTIWHMYKN 259 (261)
Q Consensus 230 ~~~~~e~l~f~~~~g~~~~i~~ll~eml~~ 259 (261)
+.+..|.++|.+. | ++|+++|+.||+..
T Consensus 204 ~~~~~e~l~~~k~-~-~~~~~~Ll~Em~~~ 231 (232)
T 1osh_A 204 NHHHAEMLMSWRV-N-DHKFTPLLCEIWDV 231 (232)
T ss_dssp HHHHHHHHHHHHH-T-TCCCCHHHHHHHTC
T ss_pred HHHHHHHHHHHHh-C-CCCCChHHHHHhcC
Confidence 9999999999997 8 99999999999964
No 43
>3cqv_A Nuclear receptor subfamily 1 group D member 2; reverb beta, heme, NR1D2, DNA-binding, metal-binding, nucleus, repressor, transcription; HET: HEM; 1.90A {Homo sapiens} PDB: 2v7c_A 2v0v_A
Probab=99.95 E-value=7.7e-29 Score=208.17 Aligned_cols=149 Identities=17% Similarity=0.202 Sum_probs=133.0
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCccccccccccc-------hhHHHHHHHHHHHHHHHHhcCCChh
Q psy16761 73 KTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESCKSRH-------VDIEEEVIRFQSVLNEFKVLNIDPY 145 (261)
Q Consensus 73 ~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~~~~~ll~~~~~~~-------~~~~~~~~~l~~~~~~l~~L~l~~~ 145 (261)
.|+|..|+.+||+.++|++|.++++++.|+++. .+.+.+.+++|... .++.+.++.+.+++.+|++|++|.+
T Consensus 43 lp~F~~L~~~DQ~~LLk~~~~e~~~l~~a~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~L~ld~~ 121 (199)
T 3cqv_A 43 IPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFD-AKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 121 (199)
T ss_dssp SGGGGGSCHHHHHHHHHHHHHHHHHHHTGGGEE-TTTTEEECTTSCEEEHHHHHHTTCCHHHHHHHHHHHHHHTTCCCHH
T ss_pred CCChhhCCHHHHHHHHHHhHHHHHHHHHHHHhC-CCCCeEEecCCCeecHHHHHhcCcHHHHHHHHHHHHHHHHhCCCHH
Confidence 599999999999999999999999999998653 34555667776543 2334567788899999999999999
Q ss_pred hhhhhhHhhhcccCcccccccCCCCCCCCCCCCCCCcCcCcHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHhhccc
Q psy16761 146 EYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPR 225 (261)
Q Consensus 146 E~~lLkai~l~~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~lq~~~~~~L~~~~~~~~~~~~~Rf~~LL~~Lp~ 225 (261)
||+|||||+||||| ++|+++.+.|+++|++++.+|.+||..+||++|.||++||+++|.
T Consensus 122 E~~lLkaivL~~pd---------------------~~gL~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~Rf~~LL~~L~~ 180 (199)
T 3cqv_A 122 EMSLFTAVVLVSAD---------------------RSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPD 180 (199)
T ss_dssp HHHHHHHHHHHTSC---------------------CTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC---------------------CCCCcCHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 99999999999999 899999999999999999999999999999999999999999999
Q ss_pred ccCCCcccchhhhccccc
Q psy16761 226 LKSIPSLVLEELFFRNII 243 (261)
Q Consensus 226 Lr~~~~~~~e~l~f~~~~ 243 (261)
||+++.+.+|+++|.++.
T Consensus 181 Lr~l~~~~~E~l~~~k~~ 198 (199)
T 3cqv_A 181 LRSLNNMHSEELLAFKVH 198 (199)
T ss_dssp HHHHHHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 999999999999999864
No 44
>3l0l_A Nuclear receptor ROR-gamma; nuclear receptor, rorgamma, alternative splicing, DNA-bindin binding, nucleus, receptor, zinc-finger, acetylation, activator; HET: HC3; 1.74A {Homo sapiens} SCOP: a.123.1.0 PDB: 3b0w_A* 3kyt_A* 3l0j_A*
Probab=99.95 E-value=2.3e-29 Score=218.45 Aligned_cols=161 Identities=12% Similarity=0.117 Sum_probs=141.8
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCccccccccc------cchhHHHHHHHHHHHHHHHHhcCCChhh
Q psy16761 73 KTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESCKS------RHVDIEEEVIRFQSVLNEFKVLNIDPYE 146 (261)
Q Consensus 73 ~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~~~~~ll~~~~~------~~~~~~~~~~~l~~~~~~l~~L~l~~~E 146 (261)
.|+|..|+.+||+.++|.+|.|+++++.|+++.+.+ +.+++++.. ...++.+.++.+.+++.+|++|++|.+|
T Consensus 79 iP~F~~L~~~DQi~LLk~~~~el~lL~~a~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld~~E 157 (248)
T 3l0l_A 79 LSGFMELCQNDQIVLLKAGAMEVVLVRMCRAYNADN-RTVFFEGKYGGMELFRALGCSELISSIFDFSHSLSALHFSEDE 157 (248)
T ss_dssp STTGGGSCHHHHHHHHHHHHHHHHHHHGGGGEETTT-TEEEETTEEECGGGGGGGSCHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred CCCcccCCHHHHHHHHHHhHHHHHHHHHHHHhcCCC-CEEEeCCCcccHHHHhhccHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 599999999999999999999999999998876543 334432211 1134567788899999999999999999
Q ss_pred hhhhhHhhhcccCcccccccCCCCCCCCCCCCCCCcCcCcHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHhhcccc
Q psy16761 147 YDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRL 226 (261)
Q Consensus 147 ~~lLkai~l~~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~lq~~~~~~L~~~~~~~~~~~~~Rf~~LL~~Lp~L 226 (261)
|+|||||+||||| ++|++++.+|+++|++++.+|++||..+|| +.||++||++ |.|
T Consensus 158 ~~lLkAivLfnpd---------------------~~gL~~~~~ve~lqe~~~~aL~~y~~~~~~--~~rf~~LLl~-p~L 213 (248)
T 3l0l_A 158 IALYTALVLINAH---------------------RPGLQEKRKVEQLQYNLELAFHHHLCKTHR--QSILAKLPPK-GKL 213 (248)
T ss_dssp HHHHHHHHHSCTT---------------------CTTCSCHHHHHHHHHHHHHHHHHHHHHTTC--GGGGGGSCCT-THH
T ss_pred HHHHHHHHHHCCC---------------------CCCCccHHHHHHHHHHHHHHHHHHHHhhCh--HHHHHHhhcc-HHH
Confidence 9999999999999 999999999999999999999999998885 6899999999 999
Q ss_pred cCCCcccchhhhcccccCCC---CcHHHHHHHHHh
Q psy16761 227 KSIPSLVLEELFFRNIIGHN---TTIKKTIWHMYK 258 (261)
Q Consensus 227 r~~~~~~~e~l~f~~~~g~~---~~i~~ll~eml~ 258 (261)
|+++.+++|++||.+.+|+. +|+++|+.||+.
T Consensus 214 R~i~~~~~e~l~~~k~~~p~~~~~~~p~Ll~Emf~ 248 (248)
T 3l0l_A 214 RSLCSQHVERLQIFQHLHPIVVQAAFPPLYKELFS 248 (248)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHSCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhhCcccccCCCChHHHHhhC
Confidence 99999999999999999932 579999999984
No 45
>2nxx_E Ecdysone receptor (ECR, NRH1); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}
Probab=99.95 E-value=1.6e-28 Score=213.11 Aligned_cols=163 Identities=15% Similarity=0.173 Sum_probs=147.1
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCccccccccccc-------hhHHHHHHHHHHHHHHHHhcCCChh
Q psy16761 73 KTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESCKSRH-------VDIEEEVIRFQSVLNEFKVLNIDPY 145 (261)
Q Consensus 73 ~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~~~~~ll~~~~~~~-------~~~~~~~~~l~~~~~~l~~L~l~~~ 145 (261)
.|+|..|+.+||+.++|.+|.++++++.|+++.+ +.+.+++++|... .++.+.++.+.+++.+|++|++|.+
T Consensus 75 lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~l~~L~ld~~ 153 (248)
T 2nxx_E 75 LPGFDKLLREDQIALLKACSSEVMMFRMARRYDV-QTDSILFVNNQPYSRDSYNLAGMGETIEDLLHFCRTMYSMRVDNA 153 (248)
T ss_dssp STTGGGSCHHHHHHHHHHHHHHHHHHHHHTTEET-TTTEEECTTSCEECHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHH
T ss_pred CCchhhCCHHHHHHHHHHhHHHHHHHHHHHHhcC-CCCeEEecCCceecHHHHHhcchHHHHHHHHHHHHHHHHhcCCHH
Confidence 5999999999999999999999999999999765 4556777776542 2445677888999999999999999
Q ss_pred hhhhhhHhhhcccCcccccccCCCCCCCCCCCCCCCcCcCcHHHHHHHHHHHHHHHHHHHHhcCC-CCccHHHHHHhhcc
Q psy16761 146 EYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYP-SQPTRFCKIQLILP 224 (261)
Q Consensus 146 E~~lLkai~l~~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~lq~~~~~~L~~~~~~~~~-~~~~Rf~~LL~~Lp 224 (261)
||+|||||+||| | ++|+++.+.|+++|++++.+|.+||..+|+ ++|.||++||++||
T Consensus 154 E~~lLkAivL~~-d---------------------~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~Rf~~LL~~L~ 211 (248)
T 2nxx_E 154 EYALLTAIVIFS-E---------------------RPALIEGWKVEKIQEIYLEALRAYVDNRRKPKPGTIFAKLLSVLT 211 (248)
T ss_dssp HHHHHHHHHHTC-C---------------------CSSCTTHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-C---------------------CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 999999999997 8 899999999999999999999999999984 68999999999999
Q ss_pred cccCCCcccchhhhcccccCCCCcHHHHHHHHHhcC
Q psy16761 225 RLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 260 (261)
Q Consensus 225 ~Lr~~~~~~~e~l~f~~~~g~~~~i~~ll~eml~~~ 260 (261)
.||+++.+..|++|+.++.| +++++|+.||+..+
T Consensus 212 ~Lr~l~~~~~e~l~~~~~~~--~~~~~Ll~Em~~~~ 245 (248)
T 2nxx_E 212 ELRTLGNQNSEMCFSLKLKN--KKLPPFLAEIWDVD 245 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--CCCCHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHhCCC--CCccHHHHHHhcCc
Confidence 99999999999999999977 59999999999764
No 46
>3n00_A REV-ERBA-alpha; reverba ncorid1, anti-parallel B-sheet, transcription regula; 2.60A {Homo sapiens}
Probab=99.95 E-value=2.5e-28 Score=211.59 Aligned_cols=148 Identities=15% Similarity=0.217 Sum_probs=128.0
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCccccccccccc-------hhHHHHHHHHHHHHHHHHhcCCChh
Q psy16761 73 KTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESCKSRH-------VDIEEEVIRFQSVLNEFKVLNIDPY 145 (261)
Q Consensus 73 ~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~~~~~ll~~~~~~~-------~~~~~~~~~l~~~~~~l~~L~l~~~ 145 (261)
.|+|..|+.+||+.++|.+|.++++++.|++. ..+.+.+++++|... .++.+.++.+.+++.+|++|++|.+
T Consensus 88 lP~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~l~~L~ld~~ 166 (245)
T 3n00_A 88 IPGFRDLSQHDQVTLLKAGTFEVLMVRFASLF-NVKDQTVMFLSRTTYSLQELGAMGMGDLLSAMFDFSEKLNSLALTEE 166 (245)
T ss_dssp STTGGGSCHHHHHHHHHHHHHHHHHHHHHHTC-CSCC--------------CCGGGTTHHHHHHHHHHHHHHHHTCCCHH
T ss_pred CCChhhCCHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCeEEecCCCeecHHHHhhccHHHHHHHHHHHHHHHHHHcCCHH
Confidence 59999999999999999999999999999864 334455666665432 3466778889999999999999999
Q ss_pred hhhhhhHhhhcccCcccccccCCCCCCCCCCCCCCCcCcCcHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHhhccc
Q psy16761 146 EYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPR 225 (261)
Q Consensus 146 E~~lLkai~l~~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~lq~~~~~~L~~~~~~~~~~~~~Rf~~LL~~Lp~ 225 (261)
||+|||||+||||| ++|+++.++|+++|+++..+|.+||..+||++|.||++||++||.
T Consensus 167 E~~lLkAIvL~npd---------------------~~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~RF~~LLl~Lp~ 225 (245)
T 3n00_A 167 ELGLFTAVVLVSAD---------------------RSGMENSASVEQLQETLLRALRALVLKNRPLETSRFTKLLLKLPD 225 (245)
T ss_dssp HHHHHHHHHHHTSC---------------------CTTCSSHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHTHHHH
T ss_pred HHHHHHHHHHhCCC---------------------CCCCccHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhHH
Confidence 99999999999999 999999999999999999999999999999999999999999999
Q ss_pred ccCCCcccchhhhcccc
Q psy16761 226 LKSIPSLVLEELFFRNI 242 (261)
Q Consensus 226 Lr~~~~~~~e~l~f~~~ 242 (261)
||+++.+++|++||.+.
T Consensus 226 LR~l~~~~~E~L~~~k~ 242 (245)
T 3n00_A 226 LRTLNNMHSEKLLSFRV 242 (245)
T ss_dssp HHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999999875
No 47
>1z5x_E Ecdysone receptor ligand binding domain; ponasterone A, nuclear receptor, ECR, USP, hormone/growth factor receptor complex; HET: P1A; 3.07A {Bemisia tabaci}
Probab=99.95 E-value=2e-28 Score=218.84 Aligned_cols=163 Identities=15% Similarity=0.223 Sum_probs=148.1
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCccccccccccc-------hhHHHHHHHHHHHHHHHHhcCCChh
Q psy16761 73 KTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESCKSRH-------VDIEEEVIRFQSVLNEFKVLNIDPY 145 (261)
Q Consensus 73 ~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~~~~~ll~~~~~~~-------~~~~~~~~~l~~~~~~l~~L~l~~~ 145 (261)
.|+|..|+.+||+.+|+.+|.++++++.|+++.+ +.+.+++++|... .++.+.++.+.+++.+|++|++|.+
T Consensus 139 lP~F~~L~~~DQi~LLk~~w~el~lL~~a~rs~~-~~~~l~~~~g~~~~~~~~~~~g~~~~~~~i~~~~~~l~~L~ld~~ 217 (310)
T 1z5x_E 139 LPGFDKLIREDQIALLKACSSEVMMFRMARRYDA-ETDSILFATNQPYTRESYTVAGMGDTVEDLLRFCRHMCAMKVDNA 217 (310)
T ss_dssp STTGGGSCHHHHHHHHHHHHHHHHHHHHHTTEET-TTTEEECTTSCEECHHHHHHTTTHHHHHHHHHHHHHHHHHTCCHH
T ss_pred CcchhhCCHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCeEEeCCCccccHHHHHhcchhHHHHHHHHHHHHHHHHcCCHH
Confidence 7999999999999999999999999999999876 4556777777542 2455678889999999999999999
Q ss_pred hhhhhhHhhhcccCcccccccCCCCCCCCCCCCCCCcCcCcHHHHHHHHHHHHHHHHHHHHhcC-CCCccHHHHHHhhcc
Q psy16761 146 EYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVY-PSQPTRFCKIQLILP 224 (261)
Q Consensus 146 E~~lLkai~l~~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~lq~~~~~~L~~~~~~~~-~~~~~Rf~~LL~~Lp 224 (261)
||+|||||+||| | ++||++...|+++|++++.+|.+||..+| |+++.||++||++||
T Consensus 218 E~alLkAIvLf~-d---------------------~~gL~~~~~Ve~lqe~~~~aL~~y~~~~~~~~~~~RF~kLLl~Lp 275 (310)
T 1z5x_E 218 EYALLTAIVIFS-E---------------------RPSLSEGWKVEKIQEIYIEALKAYVENRRKPYATTIFAKLLSVLT 275 (310)
T ss_dssp HHHHHHHHHHTC-C---------------------CTTCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-C---------------------CCCCccHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 999999999997 8 89999999999999999999999999887 578999999999999
Q ss_pred cccCCCcccchhhhcccccCCCCcHHHHHHHHHhcC
Q psy16761 225 RLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 260 (261)
Q Consensus 225 ~Lr~~~~~~~e~l~f~~~~g~~~~i~~ll~eml~~~ 260 (261)
.||+++.+.++.+||.++.| +++++|+.||+..+
T Consensus 276 ~LR~l~~~~~e~l~~~~~~~--~~~~~Ll~Eml~~~ 309 (310)
T 1z5x_E 276 ELRTLGNMNSETCFSLKLKN--RKVPSFLEEIWDVV 309 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--CCCCHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHhcCC--CCchHHHHHHHcCC
Confidence 99999999999999999987 49999999999864
No 48
>1sqn_A PR, progesterone receptor; nuclear receptor, steroid receptor, norethindrone, birth control, hormone/growth factor receptior complex; HET: NDR; 1.45A {Homo sapiens} SCOP: a.123.1.1 PDB: 3g8o_A* 3g8n_A* 3d90_A* 1e3k_A* 1sr7_A* 1zuc_B* 3zr7_A* 2w8y_A* 3zra_A* 3zrb_A* 4a2j_A* 4apu_A* 1a28_A* 2ovh_A* 2ovm_A* 3hq5_A* 3kba_A*
Probab=99.95 E-value=3e-29 Score=219.20 Aligned_cols=163 Identities=17% Similarity=0.156 Sum_probs=142.0
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCc-cccccccccc-------hhHHHHHHHHHHHHHHHHhcCCCh
Q psy16761 73 KTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLG-ELVESCKSRH-------VDIEEEVIRFQSVLNEFKVLNIDP 144 (261)
Q Consensus 73 ~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~~~~-~ll~~~~~~~-------~~~~~~~~~l~~~~~~l~~L~l~~ 144 (261)
.|+|..|+.+||+.++|++|.|+++++.|+++.+.+.+ .+++++|... .++.+.++.+.+++.+|++|++|.
T Consensus 64 ip~F~~L~~~DQ~~LLk~~~~el~~L~~a~~s~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~L~ld~ 143 (261)
T 1sqn_A 64 LPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSGQMLYFAPDLILNEQRMKESSFYSLCLTMWQIPQEFVKLQVSQ 143 (261)
T ss_dssp STTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEETTEEECGGGCCSHHHHHHHHHHHHHHHHHHHHTCCH
T ss_pred CccHhhCCHHHHHHHHHhhHHHHHHHHHHHHhhhcCCCCeEEeCCCcccchHhhhhhhHHHHHHHHHHHHHHHHHHCCCH
Confidence 59999999999999999999999999999998765433 3445544321 345567788999999999999999
Q ss_pred hhhhhhhHhhhccc-CcccccccCCCCCCCCCCCCCCCcCcCcHHHHHHHHHHHHHHHHHHHHhc---CCCCccHHHHHH
Q psy16761 145 YEYDYIRAITLFKT-VIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTV---YPSQPTRFCKIQ 220 (261)
Q Consensus 145 ~E~~lLkai~l~~p-d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~lq~~~~~~L~~~~~~~---~~~~~~Rf~~LL 220 (261)
+||+|||||+|||| | ++|+++..+|+++|+++..+|.+||..+ +|+++.||++||
T Consensus 144 ~E~~lLkAIvLfnp~~---------------------~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~~~~Rf~~LL 202 (261)
T 1sqn_A 144 EEFLCMKVLLLLNTIP---------------------LEGLRSQTQFEEMRSSYIRELIKAIGLRQKGVVSSSQRFYQLT 202 (261)
T ss_dssp HHHHHHHHHHHTSEEC---------------------TTCCTTHHHHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCc---------------------ccccccHHHHHHHHHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Confidence 99999999999999 8 8999999999999999999999999864 457899999999
Q ss_pred hhcccccCCCcccchhhhccccc-----CCCCcHHHHHHHHHhc
Q psy16761 221 LILPRLKSIPSLVLEELFFRNII-----GHNTTIKKTIWHMYKN 259 (261)
Q Consensus 221 ~~Lp~Lr~~~~~~~e~l~f~~~~-----g~~~~i~~ll~eml~~ 259 (261)
+++|.||+++... +.++.+++ | ++++++++.||+.+
T Consensus 203 ~~L~~Lr~~~~~~--~~~~~~~~~q~~~~-~~~~~~Ll~Ei~~~ 243 (261)
T 1sqn_A 203 KLLDNLHDLVKQL--HLYCLNTFIQSRAL-SVEFPEMMSEVIAA 243 (261)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHTHHHH-TCCCCHHHHHHHHH
T ss_pred HHhHHHHHHHHHH--HHHHHHHHHHhcCC-CCChHHHHHHHHhc
Confidence 9999999998754 66667887 9 99999999999974
No 49
>1t7r_A Androgen receptor; nuclear receptor, transcription factor, ligand binding domain, AF-2, androgen, testosterone, DHT, alpha-helical sandwich; HET: DHT; 1.40A {Pan troglodytes} SCOP: a.123.1.1 PDB: 1t73_A* 1t76_A* 1t74_A* 1t79_A* 1t7m_A* 1t7f_A* 1t7t_A* 2am9_A* 2ama_A* 2amb_A* 2pnu_A* 1e3g_A* 2q7i_A* 1xj7_A* 2q7j_A* 3g0w_A* 2ihq_A* 2nw4_A* 1i37_A* 2q7k_A* ...
Probab=99.95 E-value=4e-29 Score=219.35 Aligned_cols=166 Identities=14% Similarity=0.149 Sum_probs=143.3
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCc-cccccccccc-------hhHHHHHHHHHHHHHHHHhcCCCh
Q psy16761 73 KTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLG-ELVESCKSRH-------VDIEEEVIRFQSVLNEFKVLNIDP 144 (261)
Q Consensus 73 ~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~~~~-~ll~~~~~~~-------~~~~~~~~~l~~~~~~l~~L~l~~ 144 (261)
.|+|..|+.+||+.++|++|.|+++++.||+++..+.+ .+++++|... ..+.+.++.+.+++.+|++|++|.
T Consensus 72 ip~F~~L~~~DQv~LLk~~w~el~iL~~a~rs~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~l~~L~ld~ 151 (269)
T 1t7r_A 72 LPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHKSRMYSQCVRMRHLSQEFGWLQITP 151 (269)
T ss_dssp STTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEETTEEECHHHHHHTTCHHHHHHHHHHHHHHHHTTCCH
T ss_pred CccHhhCCHHHHHHHHHHhHHHHHHHHHHHHhcccCCCCeEEeCCCceecHHhhhhhhHHHHHHHHHHHHHHHHHhCCCH
Confidence 59999999999999999999999999999998765433 4555655432 223356678899999999999999
Q ss_pred hhhhhhhHhhhccc-CcccccccCCCCCCCCCCCCCCCcCcCcHHHHHHHHHHHHHHHHHHHHhcC---CCCccHHHHHH
Q psy16761 145 YEYDYIRAITLFKT-VIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVY---PSQPTRFCKIQ 220 (261)
Q Consensus 145 ~E~~lLkai~l~~p-d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~lq~~~~~~L~~~~~~~~---~~~~~Rf~~LL 220 (261)
+||+|||||+|||| | ++|+++...|+++|++++.+|.+||..++ |+++.||++||
T Consensus 152 ~E~~lLkAIvLfnp~~---------------------~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~~~~Rf~~LL 210 (269)
T 1t7r_A 152 QEFLCMKALLLFSIIP---------------------VDGLKNQKFFDELRMNYIKELDRIIACKRKNPTSCSRRFYQLT 210 (269)
T ss_dssp HHHHHHHHHHHTSEEE---------------------TTCCTTHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCc---------------------cCCCccHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHH
Confidence 99999999999999 8 89999999999999999999999998775 46789999999
Q ss_pred hhcccccCCCcccchhhhc--cc-ccCCCCcHHHHHHHHHhcC
Q psy16761 221 LILPRLKSIPSLVLEELFF--RN-IIGHNTTIKKTIWHMYKNA 260 (261)
Q Consensus 221 ~~Lp~Lr~~~~~~~e~l~f--~~-~~g~~~~i~~ll~eml~~~ 260 (261)
++||.||+++.+.+|.+|. .+ ..| .+++++|+.||+.++
T Consensus 211 ~~L~~Lr~l~~~~~e~lf~~~~~~~~~-~~~~~~Ll~E~~~~~ 252 (269)
T 1t7r_A 211 KLLDSVQPIARELHQFTFDLLIKSHMV-SVDFPEMMAEIISVQ 252 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHH-TCCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcC-CcChHHHHHHHHhCc
Confidence 9999999999999998883 23 448 899999999999753
No 50
>3vhu_A Mineralocorticoid receptor; nuclear receptor, transcription factor, activating mutation, hypertension, antagonist, spironolactone; HET: SNL; 2.11A {Homo sapiens}
Probab=99.95 E-value=6e-29 Score=220.74 Aligned_cols=165 Identities=15% Similarity=0.128 Sum_probs=141.2
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCC-ccccccccccc-------hhHHHHHHHHHHHHHHHHhcCCCh
Q psy16761 73 KTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDL-GELVESCKSRH-------VDIEEEVIRFQSVLNEFKVLNIDP 144 (261)
Q Consensus 73 ~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~~~-~~ll~~~~~~~-------~~~~~~~~~l~~~~~~l~~L~l~~ 144 (261)
.|+|..|+.+||+.++|.+|.++++++.|++++..+. +.+++++|... .++.+.++.+.+++.+|++|++|.
T Consensus 97 lP~F~~L~~~DQi~LLk~~~~el~lL~~a~rS~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld~ 176 (294)
T 3vhu_A 97 LPGFKNLPLEDQITLIQYSWMSLLSFALSWRSYKHTNSQFLYFAPDLVFNEEKMHQSAMYELCQGMHQISLQFVRLQLTF 176 (294)
T ss_dssp CTTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEETTEEECHHHHHHTTCHHHHHHHHHHHHHHHHHTCCH
T ss_pred CcchhhCCHHHHHHHHHHhHHHHHHHHHHHHhhhcCCCCeEEeCCCccccHHHhhcccHHHHHHHHHHHHHHHHHhCCCH
Confidence 5999999999999999999999999999999876543 35566666432 234566788899999999999999
Q ss_pred hhhhhhhHhhhccc-CcccccccCCCCCCCCCCCCCCCcCcCcHHHHHHHHHHHHHHHHHHHHhcCCCC---ccHHHHHH
Q psy16761 145 YEYDYIRAITLFKT-VIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQ---PTRFCKIQ 220 (261)
Q Consensus 145 ~E~~lLkai~l~~p-d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~lq~~~~~~L~~~~~~~~~~~---~~Rf~~LL 220 (261)
+||+|||||+|||| | ++|+++..+|+++|++++.+|.+||..+++++ +.||++||
T Consensus 177 ~EyalLkAIvLfnp~d---------------------~~gL~~~~~Ve~lQe~~~~aL~~y~~~~~~~~~~~~~RF~~LL 235 (294)
T 3vhu_A 177 EEYTIMKVLLLLSTIP---------------------KDGLKSQAAFEEMRTNYIKELRKMVTKCPNNSGQSWQRFYQLT 235 (294)
T ss_dssp HHHHHHHHHHHTSEEE---------------------TTCCTTHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCC---------------------CCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCCccHhHHHHHHH
Confidence 99999999999999 8 89999999999999999999999999888765 78999999
Q ss_pred hhcccccCCCcccchhhhcccc---cCCCCcHHHHHHHHHhc
Q psy16761 221 LILPRLKSIPSLVLEELFFRNI---IGHNTTIKKTIWHMYKN 259 (261)
Q Consensus 221 ~~Lp~Lr~~~~~~~e~l~f~~~---~g~~~~i~~ll~eml~~ 259 (261)
++||.||+++.+.+|++||... .+ .+++++|+.||+.+
T Consensus 236 ~lLp~Lr~l~~~~~e~lff~~~q~~~~-~~~~p~Ll~Ei~~~ 276 (294)
T 3vhu_A 236 KLLDSMHDLVSDLLEFCFYTFRESHAL-KVEFPAMLVEIISD 276 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHH-TCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccC-cCCCCHHHHHHHcC
Confidence 9999999999999999997554 56 78999999999975
No 51
>3mnp_A Glucocorticoid receptor; protein-ligand complex, steroid nuclear receptor, mouse GR, hormone receptor; HET: DEX; 1.50A {Mus musculus} SCOP: a.123.1.1 PDB: 3mno_A* 3mne_A* 1m2z_A* 3k22_A* 3cld_A* 3k23_A* 3e7c_A* 1nhz_A* 1p93_A* 3bqd_A* 3h52_A* 3gn8_A* 4e2j_A*
Probab=99.95 E-value=9e-29 Score=216.24 Aligned_cols=165 Identities=15% Similarity=0.102 Sum_probs=145.6
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCc-cccccccccc-------hhHHHHHHHHHHHHHHHHhcCCCh
Q psy16761 73 KTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLG-ELVESCKSRH-------VDIEEEVIRFQSVLNEFKVLNIDP 144 (261)
Q Consensus 73 ~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~~~~-~ll~~~~~~~-------~~~~~~~~~l~~~~~~l~~L~l~~ 144 (261)
.|+|..|+.+||+.++|.+|.++++++.|+++++.+.+ .+.+++|... .++.+.++.+.+++.+|++|++|.
T Consensus 65 iP~F~~L~~~DQ~~LLk~~~~el~iL~~a~rs~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld~ 144 (261)
T 3mnp_A 65 IPGFRNLHLDDQMTLLQYSWMFLMVFALGWRSYRQASGNLLCFAPDLIINEQRMTLPCMYDQCKHMLFISTELQRLQVSY 144 (261)
T ss_dssp STTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEETTEEECHHHHTSTTTHHHHHHHHHHHHHHHHHTCCH
T ss_pred CcChhcCCHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCEEEecCCcccchhhhhhhhHHHHHHHHHHHHHHHHHhCCCH
Confidence 59999999999999999999999999999998765444 3555655422 345567788899999999999999
Q ss_pred hhhhhhhHhhhccc-CcccccccCCCCCCCCCCCCCCCcCcCcHHHHHHHHHHHHHHHHHHHHhcCCC---CccHHHHHH
Q psy16761 145 YEYDYIRAITLFKT-VIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPS---QPTRFCKIQ 220 (261)
Q Consensus 145 ~E~~lLkai~l~~p-d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~lq~~~~~~L~~~~~~~~~~---~~~Rf~~LL 220 (261)
+||+|||||+|||| | ++|+++..+|+++|++++.+|.+||..+||+ ++.||++||
T Consensus 145 ~E~~lLkAIvL~np~d---------------------~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~~~~Rf~~LL 203 (261)
T 3mnp_A 145 EEYLCMKTLLLLSSVP---------------------KEGLKSQELFDEIRMTYIKELGKAIAKRGGNSSQNWQRFYQLT 203 (261)
T ss_dssp HHHHHHHHHHHTSEEE---------------------TTCCTTHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCC---------------------cCCCccHHHHHHHHHHHHHHHHHHHHhhCCCCchhhhHHHHHH
Confidence 99999999999999 8 8999999999999999999999999999984 589999999
Q ss_pred hhcccccCCCcccchhhhccccc--CCCCcHHHHHHHHHhc
Q psy16761 221 LILPRLKSIPSLVLEELFFRNII--GHNTTIKKTIWHMYKN 259 (261)
Q Consensus 221 ~~Lp~Lr~~~~~~~e~l~f~~~~--g~~~~i~~ll~eml~~ 259 (261)
+++|.||+++.+..+.+|+..+. + ++.+++++.||+..
T Consensus 204 ~lL~~Lr~l~~~~~e~~f~~~~~~~~-~~~~p~Ll~Ei~~~ 243 (261)
T 3mnp_A 204 KLLDSMHDVVENLLSYCFQTFLDKSM-SIEFPEMLAEIITN 243 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCGGG-CCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc-cCCCcHHHHHHHhc
Confidence 99999999999999998876665 5 67899999999864
No 52
>1pzl_A Hepatocyte nuclear factor 4-alpha; transcription; HET: MYR; 2.10A {Homo sapiens} SCOP: a.123.1.1 PDB: 3fs1_A* 1m7w_A* 1lv2_A*
Probab=99.95 E-value=6.8e-28 Score=207.03 Aligned_cols=166 Identities=24% Similarity=0.325 Sum_probs=148.5
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCccccccccccc-------hhHHHHHHH-HHHHHHHHHhcCCCh
Q psy16761 73 KTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESCKSRH-------VDIEEEVIR-FQSVLNEFKVLNIDP 144 (261)
Q Consensus 73 ~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~~~~~ll~~~~~~~-------~~~~~~~~~-l~~~~~~l~~L~l~~ 144 (261)
.|+|..|+.+||+.++|.+|.+.+++..|+++.+. .+.++.++|... .++...... +.+++.+|++|++|.
T Consensus 64 ~p~F~~L~~~DQ~~LLk~~~~~~~~L~~a~~s~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~ld~ 142 (237)
T 1pzl_A 64 IPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVF-KDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDD 142 (237)
T ss_dssp CHHHHTSCHHHHHHHHHHSHHHHHHHHHHHHHTTS-SSEEECTTSCEEESSCGGGGGGHHHHHHHHHHTHHHHHHHTCCH
T ss_pred CcCcccCCHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCceeecCCcccCccchhhhhhHHHHHHHHHHHHHHHHhhCCCH
Confidence 69999999999999999999999999999999774 444556655422 233333333 568999999999999
Q ss_pred hhhhhhhHhhhcccCcccccccCCCCCCCCCCCCCCCcCcCcHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHhhcc
Q psy16761 145 YEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILP 224 (261)
Q Consensus 145 ~E~~lLkai~l~~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~lq~~~~~~L~~~~~~~~~~~~~Rf~~LL~~Lp 224 (261)
+||+||||+++|+|| ++|+++..+|+++|+++..+|.+|+..++|+++.||++||+++|
T Consensus 143 ~E~~~L~ai~l~~~~---------------------~~~l~~~~~ve~~q~~~~~~L~~y~~~~~~~~~~Rf~~LL~~l~ 201 (237)
T 1pzl_A 143 NEYAYLKAIIFFDPD---------------------AKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLP 201 (237)
T ss_dssp HHHHHHHHHHHCCTT---------------------CTTCSCHHHHHHHHHHHHHHHHHHHHSSSSCCTTHHHHHHTHHH
T ss_pred HHHHHHHHHHHhCCC---------------------CCCCCcHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Confidence 999999999999999 89999999999999999999999999999999999999999999
Q ss_pred cccCCCcccchhhhcccccCCCCcHHHHHHHHHhcCC
Q psy16761 225 RLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNAG 261 (261)
Q Consensus 225 ~Lr~~~~~~~e~l~f~~~~g~~~~i~~ll~eml~~~~ 261 (261)
.||.++.+..+++++.+++| .+++++++.||+.+++
T Consensus 202 ~lr~~~~~~~e~l~~~~~~~-~~~~~~l~~em~~~~~ 237 (237)
T 1pzl_A 202 TLQSITWQMIEQIQFIKLFG-MAKIDNLLQEMLLGGS 237 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CSCCCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhhhHHHhC-CCcHHHHHHHHHcCCC
Confidence 99999999999999999999 9999999999999874
No 53
>3up3_A Acedaf-12; ligand binding domain, nematode, steroid binding protein- transcription complex; HET: XCA; 1.25A {Ancylostoma ceylanicum} PDB: 3up0_A*
Probab=99.95 E-value=2.7e-28 Score=211.05 Aligned_cols=162 Identities=17% Similarity=0.205 Sum_probs=137.8
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCcc--ccccccccc---------hhHHH-HHHHHHHHHHHHHh-
Q psy16761 73 KTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGE--LVESCKSRH---------VDIEE-EVIRFQSVLNEFKV- 139 (261)
Q Consensus 73 ~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~~~~~--ll~~~~~~~---------~~~~~-~~~~l~~~~~~l~~- 139 (261)
.|+|..|+.+||+.+||.+|.|+++++.|+++.+.+..- ..++++... .++.+ .++.+.+++.+|++
T Consensus 64 iP~F~~L~~~DQi~LLk~~w~Ell~L~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~ 143 (243)
T 3up3_A 64 LPAFNDLSQDGKFALLKGGMIEMLTVRGVRRFDSSSGSWTTPTLGESSEVSINMFDQLNADVRSEQKMRFLQFFKIFHED 143 (243)
T ss_dssp CHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHEETTTTEECCTTSCTTCCEEGGGGGGSCTTTHHHHHHHHHHHHHTSCHH
T ss_pred CCCcccCCHHHHHHHHHHhHHHHHHHHHHHHhcccCCeeeecccCCCccccHHHHhhhcccccHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999987644331 122232211 34554 57788999999997
Q ss_pred cCCChhhhhhhhHhhhcccCcccccccCCCCCCCCCCCCCCCcCcCcH---HHHHHHHHHHHHHHHHHHHhcC-CCCccH
Q psy16761 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDV---IAIAAIQGHTQIFLNKYIHTVY-PSQPTR 215 (261)
Q Consensus 140 L~l~~~E~~lLkai~l~~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~i~~lq~~~~~~L~~~~~~~~-~~~~~R 215 (261)
|++|.+||+|||||+||||+ +|++++ .+|+++|++++.+|++||..+| |++|.|
T Consensus 144 L~ld~~E~alLkAivLfsp~----------------------~gL~~~~~~~~Ve~lQe~~~~aL~~y~~~~~~p~~~~r 201 (243)
T 3up3_A 144 IRSNDLVISMIMLIVLFSPR----------------------DSITDPEDRRIIARHHEQFSALLNRYLESLYGDDAHQL 201 (243)
T ss_dssp HHTCHHHHHHHHHHHHSCCC----------------------TTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHH
T ss_pred HCCCHHHHHHHHHHhhcCCC----------------------CCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCChhHH
Confidence 99999999999999999976 699866 7999999999999999998666 788999
Q ss_pred HHHHHhhcccccCCCcccchhhhcccccCCCCcHHHHHHHHHhc
Q psy16761 216 FCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKN 259 (261)
Q Consensus 216 f~~LL~~Lp~Lr~~~~~~~e~l~f~~~~g~~~~i~~ll~eml~~ 259 (261)
|++||+++|.||+++. .++++|+.+ ++ +.++++|+.||++-
T Consensus 202 f~kLL~~Lp~LR~i~~-~~e~lf~~k-~~-~~~~~pLl~E~f~~ 242 (243)
T 3up3_A 202 NEQLPTALRMLREISA-SSGMLFLGT-VN-TSEAEPLPREFFKV 242 (243)
T ss_dssp HHHHHHHHHHHHHHHH-TCTTTTTTS-CC-GGGSCHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHhcc-cC-CCCCCcHHHHHhCC
Confidence 9999999999999999 889999877 46 67999999999863
No 54
>3gyt_A Nuclear hormone receptor of the steroid/thyroid hormone receptors superfamily; nuclear receptor, ligand binding domain, dafachronic acid, nematode, DNA-binding, metal-binding, nucleus, receptor; HET: DL4; 2.40A {Strongyloides stercoralis} PDB: 3gyu_A*
Probab=99.92 E-value=3.2e-26 Score=197.96 Aligned_cols=160 Identities=16% Similarity=0.214 Sum_probs=129.0
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccccc--c---------hh-----HHHHHHHHHHHHHH
Q psy16761 73 KTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESCKSR--H---------VD-----IEEEVIRFQSVLNE 136 (261)
Q Consensus 73 ~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~~~~~ll~~~~~~--~---------~~-----~~~~~~~l~~~~~~ 136 (261)
.|+|..|+.+||+.+||.+|.|+++++.|+++.+ +.+.+.++.+.. . .+ ....++.+.+|..+
T Consensus 64 iPgF~~L~~~DQi~LLK~~~~ElliLr~a~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~~ 142 (244)
T 3gyt_A 64 LGAFNEISEAGKFSLLKGGMIEMLTIRGVTVFNA-DKGVWQTPVDGHSQISFNMFDKLRPDIKDTQKKGFLHFFNLLHSD 142 (244)
T ss_dssp CGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTEET-TTTEECCTTSTTCCEEGGGGGGSCTTTHHHHHHHHHHHHHHSCHH
T ss_pred CCCcccCCHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCeEeecCCcccchhHHHHHHhhhcchhhHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999999988544 333344443310 0 01 12234445555555
Q ss_pred HHhcCCChhhhhhhhHhhhcccCcccccccCCCCCCCCCCCCCCCcCcC---cHHHHHHHHHHHHHHHHHHHHhcC-CCC
Q psy16761 137 FKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLR---DVIAIAAIQGHTQIFLNKYIHTVY-PSQ 212 (261)
Q Consensus 137 l~~L~l~~~E~~lLkai~l~~pd~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~i~~lq~~~~~~L~~~~~~~~-~~~ 212 (261)
++. +..||+|||||+||||| ++|++ ++.+|+++|++++.+|++|+..+| |++
T Consensus 143 l~~---~~~E~alLkAivLfspD---------------------r~gL~~~~d~~~Ve~lQe~~~~aL~~y~~~~~~p~~ 198 (244)
T 3gyt_A 143 VRK---NDLAIDIIVLMVLFDSK---------------------REGLVSQQDKETVEKLHRNYESLLHRYLYSIHKEEA 198 (244)
T ss_dssp HHT---CHHHHHHHHHHHHSCTT---------------------STTCCCHHHHHHHHHHHHHHHHHHHHHHHHHCSSSH
T ss_pred HHH---hHHHHHHHHHHHHHhcc---------------------CCCCCccccHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 555 56699999999999999 99999 789999999999999999998888 788
Q ss_pred ccHHHHHHhhcccccCCCcccchhhhcccccCCCCcHHHHHHHHHhcC
Q psy16761 213 PTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 260 (261)
Q Consensus 213 ~~Rf~~LL~~Lp~Lr~~~~~~~e~l~f~~~~g~~~~i~~ll~eml~~~ 260 (261)
+.||+|||++||+||+++.++++ +|+ +.++ +.++++|+.||++.+
T Consensus 199 ~~rf~kLL~~Lp~LR~i~~~~~~-lf~-~~~~-~~~~~pLl~Eif~~~ 243 (244)
T 3gyt_A 199 EQRFASIPKALVALRKVAENAVT-LFL-GAGN-TTEAASLPKEFFATN 243 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTT-TTT-TSCC-CTTSCTTGGGTSCCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH-HHH-hccC-CccCCcHHHHHhCcC
Confidence 99999999999999999999998 554 5677 778999999998753
No 55
>3v3e_B Nuclear receptor subfamily 4 group A member 1; orphan nuclear receptor, transcription; 2.06A {Homo sapiens} PDB: 3v3q_A* 2qw4_A 1yje_A
Probab=99.55 E-value=7.6e-15 Score=127.61 Aligned_cols=99 Identities=19% Similarity=0.117 Sum_probs=86.5
Q ss_pred hhhhhccHHHHHHHHHhhcCCCCCccccccccc--c---ccchHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhhcccc
Q psy16761 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKS--R---HVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTAF 76 (261)
Q Consensus 2 ~LL~~~w~ell~l~~a~rs~~~~~~~l~~~~~~--~---~~~~~~~~~~~~~~~~~~~~l~ld~~E~~~Lkaivlf~p~f 76 (261)
+|||+||.|++++++|||+.+..++.+++++.. + ..+..+.++.+++++.+|+++++|.+||+||||||+|+ +.
T Consensus 88 ~LLk~~w~ElllL~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld~~E~a~LkAivLfs-d~ 166 (257)
T 3v3e_B 88 LLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFGDWIDSILAFSRSLHSLLVDVPAFACLSALVLIT-DR 166 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHSBGGGTEEECTTSBEEEHHHHHHHHTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSS-CC
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCeeEeCCCccccHHHHHhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC-CC
Confidence 699999999999999999999888888877631 1 12345667889999999999999999999999999998 78
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHh
Q psy16761 77 TSRRELAGHLLLAESWRELFILGLA 101 (261)
Q Consensus 77 ~~L~~~dqv~lLq~~~~e~l~L~~a 101 (261)
+||.+..+|+.+|+++..++.-++.
T Consensus 167 ~gL~~~~~Ve~lqe~~~~aL~~yi~ 191 (257)
T 3v3e_B 167 HGLQEPRRVEELQNRIASCLKEHVA 191 (257)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999876654
No 56
>3vi8_A Peroxisome proliferator-activated receptor alpha; nuclear receptor, protein-ligand complex, PPAR, transcriptio; HET: 13M; 1.75A {Homo sapiens} PDB: 2znn_A* 3et1_A* 3kdu_A* 3kdt_A* 2rew_A* 1i7g_A* 3g8i_A* 1kkq_A* 1k7l_A* 3sp6_A* 2npa_A* 2p54_A* 3fei_A* 3tkm_A* 2znq_A* 2znp_A* 3sp9_A* 3gwx_A* 3dy6_A* 1gwx_A* ...
Probab=99.52 E-value=5.8e-14 Score=123.04 Aligned_cols=102 Identities=12% Similarity=-0.021 Sum_probs=85.4
Q ss_pred hhhhhccHHHHHHHHHhhcCCCCCcccccccc-------ccccchHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhhcc
Q psy16761 2 LLLAESWRELFILGLAQYLPSLDLGELVESCK-------SRHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKT 74 (261)
Q Consensus 2 ~LL~~~w~ell~l~~a~rs~~~~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~ld~~E~~~Lkaivlf~p 74 (261)
+|||+||.|++++++|+++.+.+.....+++. ....+..+.++.+++++.+|+++++|.+||+|||||++|+|
T Consensus 112 ~LLk~~w~ElllL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~ld~~E~alLkAivLf~p 191 (273)
T 3vi8_A 112 TLLKYGVYEAIFAMLSSVMNKDGMLVAYGNGFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCG 191 (273)
T ss_dssp HHHHHHHHHHHHHHHGGGEETTEEEETTTTEEEEHHHHHHSCTTTHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCeeeeCCCccchHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Confidence 69999999999999999997654444444331 11234567788999999999999999999999999999999
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHhhh
Q psy16761 75 AFTSRRELAGHLLLAESWRELFILGLAQY 103 (261)
Q Consensus 75 ~f~~L~~~dqv~lLq~~~~e~l~L~~a~~ 103 (261)
|.+||.+..+|+.+|+.+..++.-++..+
T Consensus 192 d~~gL~~~~~Ve~lqe~~~~aL~~yi~~~ 220 (273)
T 3vi8_A 192 DRPGLLNVGHIEKMQEGIVHVLRLHLQSN 220 (273)
T ss_dssp TCTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998666543
No 57
>2e2r_A Estrogen-related receptor gamma; ERR gamma, BPA, nuclear receptor, transcription; HET: 2OH; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 2zas_A* 2zbs_A 2zkc_A* 2p7g_A* 1vjb_A* 1tfc_A 2p7a_A* 2p7z_A* 2gpu_A* 1kv6_A 2gp7_A 2gpp_A* 2gpo_A* 2gpv_A* 1s9q_A* 1s9p_A* 2ewp_A*
Probab=99.51 E-value=4.5e-14 Score=121.65 Aligned_cols=101 Identities=16% Similarity=0.186 Sum_probs=87.7
Q ss_pred hhhhhccHHHHHHHHHhhcCCCCCccccccccc------cccchHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhhccc
Q psy16761 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKS------RHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTA 75 (261)
Q Consensus 2 ~LL~~~w~ell~l~~a~rs~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~ld~~E~~~Lkaivlf~p~ 75 (261)
.|||++|.|+++++.|||+.+.++..++.++.. +..+..+..+.+++++.+|+++++|.+||+|||||++|+|+
T Consensus 84 ~LLk~~~~el~~L~~a~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~~pd 163 (244)
T 2e2r_A 84 SLLQSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIALANSD 163 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSSSCEEEETTEEECHHHHHHTTCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTCC
T ss_pred HHHHHhHHHHHHHHHHHHhcccCCeEEecCCEeecHHHhhhccHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC
Confidence 699999999999999999999888877776521 12344566778889999999999999999999999999999
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHhh
Q psy16761 76 FTSRRELAGHLLLAESWRELFILGLAQ 102 (261)
Q Consensus 76 f~~L~~~dqv~lLq~~~~e~l~L~~a~ 102 (261)
.++|++..+++.+|+.+..++.-++..
T Consensus 164 ~~gL~~~~~v~~lq~~~~~aL~~y~~~ 190 (244)
T 2e2r_A 164 SMHIEDVEAVQKLQDVLHEALQDYEAG 190 (244)
T ss_dssp CTTCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998866543
No 58
>3f5c_B Nuclear receptor subfamily 0 group B member 1; transcriptional corepressor, regulatory complex, DNA-binding, lipid-binding, metal-binding; 3.00A {Mus musculus}
Probab=99.50 E-value=1.7e-13 Score=119.83 Aligned_cols=136 Identities=20% Similarity=0.250 Sum_probs=101.3
Q ss_pred hhhhhccHHHHHHHHHhhcCCCCCcccc---------ccccc-----------------------cccchHHHHHHHHHH
Q psy16761 2 LLLAESWRELFILGLAQYLPSLDLGELV---------ESCKS-----------------------RHVDIEEEVIRFQSV 49 (261)
Q Consensus 2 ~LL~~~w~ell~l~~a~rs~~~~~~~l~---------~~~~~-----------------------~~~~~~~~~~~~~~~ 49 (261)
+|||++|.|+++|++|||+++.+...+. .++.. +.....+.++.++++
T Consensus 83 ~LLk~~w~ElllL~~A~rs~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 162 (268)
T 3f5c_B 83 VLVRSCWAPLLMLELAQDHLHFEMMEIPETNTTQEMLTTRRQETEGPEPAEPQATEQPQMVSAEAGHLLPAAAVQAIKSF 162 (268)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCCCC---------------------------------------CCCCSSHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHhccccccccchhhhhhhhhcccccccccccccccccccccccccchhccccHHHHHHHHHHH
Confidence 6999999999999999999987655321 11111 001123457889999
Q ss_pred HHHhhcCCCChHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCccccccccccchhHHHHHHH
Q psy16761 50 LNEFKVLNIDPYEYDYIRAITLFKTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEVIR 129 (261)
Q Consensus 50 ~~~~~~l~ld~~E~~~Lkaivlf~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~s~~~~~~~ll~~~~~~~~~~~~~~~~ 129 (261)
+.+|+++++|.+||+|||||++|+|+.+||.+..+|+.+|+.+..++.-++.... +.+ .. .+..
T Consensus 163 ~~~l~~L~ld~~E~~lLkAivL~npd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~-p~~-----------~~----Rf~~ 226 (268)
T 3f5c_B 163 FFKCWSLNIDTKEYAYLKGTVLFNPDLPGLQCVKYIEGLQWRTQQILTEHIRMMQ-REY-----------QI----RSAE 226 (268)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHS-SCS-----------SH----HHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHC-CCh-----------HH----HHHH
Confidence 9999999999999999999999999999999999999999999999986665432 211 01 2334
Q ss_pred HHHHHHHHHhcCCChhhhhhhhHh
Q psy16761 130 FQSVLNEFKVLNIDPYEYDYIRAI 153 (261)
Q Consensus 130 l~~~~~~l~~L~l~~~E~~lLkai 153 (261)
+...+..++.+.-...|....+-+
T Consensus 227 LL~~Lp~LR~i~~~~~e~l~~~k~ 250 (268)
T 3f5c_B 227 LNSALFLLRFINSDVVTELFFRPI 250 (268)
T ss_dssp HHHHHHHHTTSCSSHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Confidence 556677788888888887655443
No 59
>1fcy_A RAR-gamma-1, retinoic acid receptor gamma-1; isotype selectivity, retinoid ligand complexes, drug design, antiparallel alpha-helical sandwich fold; HET: 564 LMU; 1.30A {Homo sapiens} SCOP: a.123.1.1 PDB: 1fcz_A* 1fcx_A* 1fd0_A* 1exa_A* 1exx_A* 1dkf_B*
Probab=99.50 E-value=4.2e-14 Score=121.16 Aligned_cols=102 Identities=15% Similarity=0.049 Sum_probs=87.1
Q ss_pred hhhhhccHHHHHHHHHhhcCCCCCccccccccc--c----ccchHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhhccc
Q psy16761 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKS--R----HVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTA 75 (261)
Q Consensus 2 ~LL~~~w~ell~l~~a~rs~~~~~~~l~~~~~~--~----~~~~~~~~~~~~~~~~~~~~l~ld~~E~~~Lkaivlf~p~ 75 (261)
+|||++|.|+++++.|+|+.+.+++.++.++.. + ..+..+.++.+.+++.+|+++++|.+||+|||||++|+|+
T Consensus 80 ~LLk~~~~el~~l~~a~~~~~~~~~l~~~~g~~~~~~~~~~~g~~~~~~~i~~~~~~l~~L~ld~~E~~lLkaivL~~pd 159 (236)
T 1fcy_A 80 TLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGD 159 (236)
T ss_dssp HHHHHHHHHHHHHHHHHTEETTTTEEECTTCBEEEHHHHHHHTTGGGHHHHHHHHHHHGGGCCCHHHHHHHHHHHHSCTT
T ss_pred HHHHHhHHHHHHHHHHHHhccCCCeEEeCCCceecHHHHHHcCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCC
Confidence 699999999999999999998888777776631 1 1233345677889999999999999999999999999999
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHhhh
Q psy16761 76 FTSRRELAGHLLLAESWRELFILGLAQY 103 (261)
Q Consensus 76 f~~L~~~dqv~lLq~~~~e~l~L~~a~~ 103 (261)
.+||++..+|+.+|+.+..++.-++...
T Consensus 160 ~~gL~~~~~v~~lq~~~~~aL~~y~~~~ 187 (236)
T 1fcy_A 160 RMDLEEPEKVDKLQEPLLEALRLYARRR 187 (236)
T ss_dssp STTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999998666543
No 60
>3l0l_A Nuclear receptor ROR-gamma; nuclear receptor, rorgamma, alternative splicing, DNA-bindin binding, nucleus, receptor, zinc-finger, acetylation, activator; HET: HC3; 1.74A {Homo sapiens} SCOP: a.123.1.0 PDB: 3b0w_A* 3kyt_A* 3l0j_A*
Probab=99.50 E-value=8.3e-14 Score=120.33 Aligned_cols=102 Identities=14% Similarity=0.094 Sum_probs=87.1
Q ss_pred hhhhhccHHHHHHHHHhhcCCCCCccccccc---cc--cccchHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhhcccc
Q psy16761 2 LLLAESWRELFILGLAQYLPSLDLGELVESC---KS--RHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTAF 76 (261)
Q Consensus 2 ~LL~~~w~ell~l~~a~rs~~~~~~~l~~~~---~~--~~~~~~~~~~~~~~~~~~~~~l~ld~~E~~~Lkaivlf~p~f 76 (261)
+|||++|.|+++++.|+|+.+.++..++++. .+ +..+..+.++.+.+++.+|+++++|.+||+|||||++|+||.
T Consensus 92 ~LLk~~~~el~lL~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAivLfnpd~ 171 (248)
T 3l0l_A 92 VLLKAGAMEVVLVRMCRAYNADNRTVFFEGKYGGMELFRALGCSELISSIFDFSHSLSALHFSEDEIALYTALVLINAHR 171 (248)
T ss_dssp HHHHHHHHHHHHHHGGGGEETTTTEEEETTEEECGGGGGGGSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHSCTTC
T ss_pred HHHHHhHHHHHHHHHHHHhcCCCCEEEeCCCcccHHHHhhccHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Confidence 6999999999999999999887776666332 11 223456778889999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHhhh
Q psy16761 77 TSRRELAGHLLLAESWRELFILGLAQY 103 (261)
Q Consensus 77 ~~L~~~dqv~lLq~~~~e~l~L~~a~~ 103 (261)
+||.+..+|+.+|+.+..++.-++...
T Consensus 172 ~gL~~~~~ve~lqe~~~~aL~~y~~~~ 198 (248)
T 3l0l_A 172 PGLQEKRKVEQLQYNLELAFHHHLCKT 198 (248)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999998665543
No 61
>1nq7_A Nuclear receptor ROR-beta; ligand-binding domain, retinoids, retinoic acid, synthetic ligand, antagonist, transcription; HET: ARL; 1.50A {Rattus norvegicus} SCOP: a.123.1.1 PDB: 1k4w_A* 1n4h_A*
Probab=99.49 E-value=1.2e-13 Score=118.97 Aligned_cols=101 Identities=14% Similarity=0.072 Sum_probs=87.5
Q ss_pred hhhhhccHHHHHHHHHhhcCCCCCcccccccc----c--cccchHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhhccc
Q psy16761 2 LLLAESWRELFILGLAQYLPSLDLGELVESCK----S--RHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTA 75 (261)
Q Consensus 2 ~LL~~~w~ell~l~~a~rs~~~~~~~l~~~~~----~--~~~~~~~~~~~~~~~~~~~~~l~ld~~E~~~Lkaivlf~p~ 75 (261)
+|||++|.|+++++.|+|+.+.++..++ ++. + +..+..+.++.+++++.+|+++++|.+||+|||||++|+|+
T Consensus 86 ~LLk~~~~el~~l~~a~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~i~~~~~~l~~L~ld~~E~~lLkAivL~~pd 164 (244)
T 1nq7_A 86 LLLKSGCLEVVLVRMCRAFNPLNNTVLF-EGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPD 164 (244)
T ss_dssp HHHHHHHHHHHHHHHGGGEETTTTEEEE-TTEEEEGGGGGGGSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHSCTT
T ss_pred HHHHHhHHHHHHHHHHHHhcCCCCEEeE-CCEEecHHHHhhcChHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCC
Confidence 6999999999999999999888787777 552 1 12245677888899999999999999999999999999999
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHhhh
Q psy16761 76 FTSRRELAGHLLLAESWRELFILGLAQY 103 (261)
Q Consensus 76 f~~L~~~dqv~lLq~~~~e~l~L~~a~~ 103 (261)
.+||++..+++.+|+.+..++.-++...
T Consensus 165 ~~gL~~~~~v~~lq~~~~~aL~~y~~~~ 192 (244)
T 1nq7_A 165 RAWLLEPRKVQKLQEKIYFALQHVIQKN 192 (244)
T ss_dssp STTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999988665543
No 62
>3k6p_A Steroid hormone receptor ERR1; estrogen related receptor alpha, DNA-binding, isopeptide BON binding, nucleus, phosphoprotein, transcription; HET: 5FB; 2.00A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xb7_A 2pjl_A* 3d24_A
Probab=99.48 E-value=7.3e-14 Score=120.65 Aligned_cols=100 Identities=19% Similarity=0.223 Sum_probs=86.3
Q ss_pred hhhhhccHHHHHHHHHhhcCCCCCccccccccc------cccchHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhhccc
Q psy16761 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKS------RHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTA 75 (261)
Q Consensus 2 ~LL~~~w~ell~l~~a~rs~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~ld~~E~~~Lkaivlf~p~ 75 (261)
.|||++|.|+++++.|||+.+.++..++.++.. +..+..+.++.+++++.+|+++++|.+||+|||||++|+|+
T Consensus 84 ~LLk~~~~el~lL~~a~~s~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~npd 163 (248)
T 3k6p_A 84 SVLQSVWMEVLVLGVAQRSLPLQDELAFAEDLVLDEEGARAAGLGELGAALLQLVRRLQALRLEREEYVLLKALALANSD 163 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSCEEEETTEEECHHHHHHTTTTTHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHccCCCCeEEeCCCcccChhhhhhccHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Confidence 699999999999999999999887777776521 11233456788899999999999999999999999999999
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHh
Q psy16761 76 FTSRRELAGHLLLAESWRELFILGLA 101 (261)
Q Consensus 76 f~~L~~~dqv~lLq~~~~e~l~L~~a 101 (261)
.+||++..+++.+|+.+..++.-++.
T Consensus 164 ~~gL~~~~~ve~lq~~~~~aL~~y~~ 189 (248)
T 3k6p_A 164 SVHIEDAEAVEQLREALHEALLEYEA 189 (248)
T ss_dssp CTTCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999875544
No 63
>3p0u_A Nuclear receptor subfamily 2 group C member 2; ligand binding domain, orphan nuclear receptor, testicular R 4, signaling protein; 3.00A {Homo sapiens}
Probab=99.48 E-value=2.2e-13 Score=117.66 Aligned_cols=102 Identities=26% Similarity=0.405 Sum_probs=84.7
Q ss_pred hhhhhccHHHHHHHHHhhcCCCCCccccccc-c-------------ccccchHHHHHHHHHHHHHhhcCCCChHHHHHHH
Q psy16761 2 LLLAESWRELFILGLAQYLPSLDLGELVESC-K-------------SRHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIR 67 (261)
Q Consensus 2 ~LL~~~w~ell~l~~a~rs~~~~~~~l~~~~-~-------------~~~~~~~~~~~~~~~~~~~~~~l~ld~~E~~~Lk 67 (261)
+|||++|.|+++++.|||+.+.+...++..+ . .......+.++.+++++.+|+++++|.+||+|||
T Consensus 70 ~LLk~~w~el~~L~~a~~s~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~L~ld~~E~~lLk 149 (249)
T 3p0u_A 70 SLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLK 149 (249)
T ss_dssp HHHHTTHHHHHHHHHHHTTTSCCCCCCCCC-CC---CC---------CCCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccCCcchhhcccccccccccccccchhhhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 6999999999999999999887655544322 0 0112344567778999999999999999999999
Q ss_pred HHHhhccccccccchhHHHHHHHHHHHHHHHHHhhh
Q psy16761 68 AITLFKTAFTSRRELAGHLLLAESWRELFILGLAQY 103 (261)
Q Consensus 68 aivlf~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~ 103 (261)
||++|+|+.+||.+..+|+.+|+.+..++.-++..+
T Consensus 150 AivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~ 185 (249)
T 3p0u_A 150 AIVLFSPDHPGLTSTSQIEKFQEAAQMELQDYVQAT 185 (249)
T ss_dssp HHHHTCSCSTTCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998666543
No 64
>3ltx_A Estrogen receptor; constitutive, nuclear receptor, DNA-binding, metal-binding, nucleus, transcription, transcription regulation, zinc-finger; 2.60A {Crassostrea gigas}
Probab=99.47 E-value=1.7e-13 Score=118.03 Aligned_cols=102 Identities=14% Similarity=0.115 Sum_probs=85.9
Q ss_pred hhhhhccHHHHHHHHHhhcCCCCCc-cccccccc------cccchHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhhcc
Q psy16761 2 LLLAESWRELFILGLAQYLPSLDLG-ELVESCKS------RHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKT 74 (261)
Q Consensus 2 ~LL~~~w~ell~l~~a~rs~~~~~~-~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~ld~~E~~~Lkaivlf~p 74 (261)
.|||++|.|+++|+.|||+.+.+.. .++.++.. ...+..+..+.+++++.+|+++++|.+||+|||||++|+|
T Consensus 72 ~LLk~~~~el~~L~~a~~s~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~l~~L~ld~~E~~lLkaivL~~p 151 (243)
T 3ltx_A 72 HLIECCWMELLLLNCAFRSIEHGGKSLAFAPDLVLDRSSWSTVEMTEIFEQVAAVSEQMMQNHLHKDELLLLQAMVLVNA 151 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTTSEEEEETTEEEEHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCeEEecCCcccchhhhcccCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Confidence 6999999999999999999888765 44444421 1124456677888999999999999999999999999999
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHhhh
Q psy16761 75 AFTSRRELAGHLLLAESWRELFILGLAQY 103 (261)
Q Consensus 75 ~f~~L~~~dqv~lLq~~~~e~l~L~~a~~ 103 (261)
+.+||++..+|+.+|+.+..++.-++...
T Consensus 152 d~~gL~~~~~v~~lq~~~~~aL~~y~~~~ 180 (243)
T 3ltx_A 152 EVRRLASYNQIFNMQQSLLDAIVDTAQKY 180 (243)
T ss_dssp CCSCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999988666543
No 65
>1n83_A Nuclear receptor ROR-alpha; three-layered alpha helical sandwich, transcription regulation, nuclear protein, DNA binding, lipid binding protein; HET: CLR; 1.63A {Homo sapiens} SCOP: a.123.1.1 PDB: 1s0x_A*
Probab=99.46 E-value=2.3e-13 Score=119.04 Aligned_cols=101 Identities=11% Similarity=0.053 Sum_probs=86.5
Q ss_pred hhhhhccHHHHHHHHHhhcCCCCCccccccc---cc--cccchHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhhcccc
Q psy16761 2 LLLAESWRELFILGLAQYLPSLDLGELVESC---KS--RHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTAF 76 (261)
Q Consensus 2 ~LL~~~w~ell~l~~a~rs~~~~~~~l~~~~---~~--~~~~~~~~~~~~~~~~~~~~~l~ld~~E~~~Lkaivlf~p~f 76 (261)
+|||++|.|+++++.|+|+.+.++..++++. .. +..+..+.++.+++++.+|+++++|.+||+|||||++|+|+.
T Consensus 101 ~LLk~~~~el~lL~~a~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~~l~~L~ld~~E~~lLkAivLfnpd~ 180 (270)
T 1n83_A 101 VLLKAGSLEVVFIRMCRAFDSQNNTVYFDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEIALFSAFVLMSADR 180 (270)
T ss_dssp HHHHHHHHHHHHHHGGGGEETTTTEEEETTEEECGGGGGGGSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHSCTTS
T ss_pred HHHHHhHHHHHHHHHHHHhcCCCCeEEeCCccccHHHHHhcCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCC
Confidence 6999999999999999999887777666432 11 122456778889999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHhh
Q psy16761 77 TSRRELAGHLLLAESWRELFILGLAQ 102 (261)
Q Consensus 77 ~~L~~~dqv~lLq~~~~e~l~L~~a~ 102 (261)
+||++..+|+.+|+.+..++.-++..
T Consensus 181 ~gL~~~~~ve~lq~~~~~aL~~y~~~ 206 (270)
T 1n83_A 181 SWLQEKVKIEKLQQKIQLALQHVLQK 206 (270)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999866553
No 66
>3ilz_A Thyroid hormone receptor, alpha isoform 1 variant; nuclear receptor, signaling protein; HET: B72; 1.85A {Homo sapiens} SCOP: a.123.1.1 PDB: 3jzb_A* 3hzf_A* 2h79_A* 2h77_A* 1nav_A* 3uvv_A* 1xzx_X* 1y0x_X* 1nq1_A* 3jzc_A* 1nuo_A* 3imy_A* 1nq0_A* 1bsx_A* 1r6g_A* 1nq2_A* 3gws_X* 1n46_A* 2h6w_X* 2j4a_A* ...
Probab=99.45 E-value=2e-13 Score=119.20 Aligned_cols=102 Identities=13% Similarity=0.039 Sum_probs=87.6
Q ss_pred hhhhhccHHHHHHHHHhhcCCCCCccccccccc------cccchHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhhccc
Q psy16761 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKS------RHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTA 75 (261)
Q Consensus 2 ~LL~~~w~ell~l~~a~rs~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~ld~~E~~~Lkaivlf~p~ 75 (261)
+|||++|.|+++|+.|+|+.+.++..++.++.. ...+.....+.+.+++.+|+++++|.+||+|||||++|+|+
T Consensus 106 ~LLk~~~~el~lL~~a~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~l~~L~ld~~E~~lLkAivL~~pd 185 (267)
T 3ilz_A 106 ILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTD 185 (267)
T ss_dssp HHHHHHHHHHHHHHHHTTCBTTTTBEEETTTEEECHHHHHHTTTTHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCEEEecCCeeecHHHHhccCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Confidence 699999999999999999998877777766521 11234456778889999999999999999999999999999
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHhhh
Q psy16761 76 FTSRRELAGHLLLAESWRELFILGLAQY 103 (261)
Q Consensus 76 f~~L~~~dqv~lLq~~~~e~l~L~~a~~ 103 (261)
.+||.+..+|+.+|+.+..++.-++...
T Consensus 186 ~~gL~~~~~ve~lq~~~~~aL~~y~~~~ 213 (267)
T 3ilz_A 186 RSGLLXVDKIEKSQEAYLLAFEHYVNHR 213 (267)
T ss_dssp SSSCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998666543
No 67
>2ocf_A Estrogen receptor; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens}
Probab=99.45 E-value=4.2e-13 Score=119.00 Aligned_cols=100 Identities=17% Similarity=0.190 Sum_probs=81.7
Q ss_pred hhhhhccHHHHHHHHHhhcCCCCCcccccccc----c---cccchHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhhcc
Q psy16761 2 LLLAESWRELFILGLAQYLPSLDLGELVESCK----S---RHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKT 74 (261)
Q Consensus 2 ~LL~~~w~ell~l~~a~rs~~~~~~~l~~~~~----~---~~~~~~~~~~~~~~~~~~~~~l~ld~~E~~~Lkaivlf~p 74 (261)
.|||++|.|+++|+.|||+.+..+..++.++. . ...+..+.++.+++++.+|+++++|.+||+|||||++|+|
T Consensus 80 ~LLk~~w~el~lL~~a~rs~~~~~~l~~~~g~~~~~~~~~~~~g~~~~~~~l~~~~~~l~~L~ld~~Ey~lLkAIvLfnp 159 (298)
T 2ocf_A 80 HLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNS 159 (298)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSTTEEEEETTEEEEHHHHTTSTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhHHHHHHHHHHHhcccCCceeecCCceechhhhhhhhhHHHHHHHHHHHHHhHhhhCcCHHHHHHHHHHHHcCC
Confidence 69999999999999999999888777777652 1 1234556677888999999999999999999999999999
Q ss_pred cc--------ccccchhHHHHHHHHHHHHHHHHHh
Q psy16761 75 AF--------TSRRELAGHLLLAESWRELFILGLA 101 (261)
Q Consensus 75 ~f--------~~L~~~dqv~lLq~~~~e~l~L~~a 101 (261)
+. ++|.+..+|+.+|+.+..++.-++.
T Consensus 160 d~~~LS~~~~~gL~~~~~ve~lqe~~~~aL~~y~~ 194 (298)
T 2ocf_A 160 GVYTFLSSTLKSLEEKDHIHRVLDKITDTLIHLMA 194 (298)
T ss_dssp SCCC-----------CHHHHHHHHHHHHHHHHHHH
T ss_pred CccccccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 98 7888889999999999999876554
No 68
>3cqv_A Nuclear receptor subfamily 1 group D member 2; reverb beta, heme, NR1D2, DNA-binding, metal-binding, nucleus, repressor, transcription; HET: HEM; 1.90A {Homo sapiens} PDB: 2v7c_A 2v0v_A
Probab=99.45 E-value=2.1e-13 Score=113.90 Aligned_cols=102 Identities=12% Similarity=0.088 Sum_probs=86.2
Q ss_pred hhhhhccHHHHHHHHHhhcCCCCCccccccccc------cccchHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhhccc
Q psy16761 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKS------RHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTA 75 (261)
Q Consensus 2 ~LL~~~w~ell~l~~a~rs~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~ld~~E~~~Lkaivlf~p~ 75 (261)
.|||++|.|+++++.|+++.+.++...+.++.. +..+..+.++.+++++.+|+++++|.+||+|||||++|+|+
T Consensus 56 ~LLk~~~~e~~~l~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~L~ld~~E~~lLkaivL~~pd 135 (199)
T 3cqv_A 56 NLLKAGTFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDEEMSLFTAVVLVSAD 135 (199)
T ss_dssp HHHHHHHHHHHHHHTGGGEETTTTEEECTTSCEEEHHHHHHTTCCHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTSC
T ss_pred HHHHHhHHHHHHHHHHHHhCCCCCeEEecCCCeecHHHHHhcCcHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 699999999999999999877667676766521 11233456778889999999999999999999999999999
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHhhh
Q psy16761 76 FTSRRELAGHLLLAESWRELFILGLAQY 103 (261)
Q Consensus 76 f~~L~~~dqv~lLq~~~~e~l~L~~a~~ 103 (261)
.+||++..+++.+|+.+..++.-++...
T Consensus 136 ~~gL~~~~~v~~~q~~~~~aL~~y~~~~ 163 (199)
T 3cqv_A 136 RSGIENVNSVEALQETLIRALRTLIMKN 163 (199)
T ss_dssp CTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988666543
No 69
>3cjw_A COUP transcription factor 2; COUP-TFII, nuclear receptor, ligand binding domain, orphan receptor, three-layered helical sandwich, DNA-binding; 1.48A {Homo sapiens}
Probab=99.44 E-value=3.3e-13 Score=116.08 Aligned_cols=101 Identities=27% Similarity=0.371 Sum_probs=81.0
Q ss_pred hhhhhccHHHHHHHHHhhcCCCCCccccccc-c-------ccccchHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhhc
Q psy16761 2 LLLAESWRELFILGLAQYLPSLDLGELVESC-K-------SRHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFK 73 (261)
Q Consensus 2 ~LL~~~w~ell~l~~a~rs~~~~~~~l~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~l~ld~~E~~~Lkaivlf~ 73 (261)
.|||++|.|+++++.|+|+++.....++..+ . ++.....+.++.+.+++.+|+++++|.+||+|||||++|+
T Consensus 73 ~LLk~~~~el~~L~~a~~s~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ld~~E~~lLkaivL~~ 152 (244)
T 3cjw_A 73 ALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFT 152 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCSCCC-----------------CCCSHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccccccccccCccchhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 6999999999999999999987766555432 1 1112233456778899999999999999999999999999
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHhh
Q psy16761 74 TAFTSRRELAGHLLLAESWRELFILGLAQ 102 (261)
Q Consensus 74 p~f~~L~~~dqv~lLq~~~~e~l~L~~a~ 102 (261)
|+.+||++..+++.+|+.+..++.-++..
T Consensus 153 pd~~gL~~~~~ve~lq~~~~~aL~~y~~~ 181 (244)
T 3cjw_A 153 SDACGLSDVAHVESLQEKSQCALEEYVRS 181 (244)
T ss_dssp TTSTTCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998766543
No 70
>2r40_D Ecdysone receptor, 20-hydroxy-ecdysone receptor; nuclear receptor ligand-binding domain, anti-parallel alpha- sandwich, ecdysone receptor, ECR, gene regulation; HET: FLC 20E EPH; 2.40A {Heliothis virescens} SCOP: a.123.1.1 PDB: 1r1k_D* 3ixp_D* 1r20_D*
Probab=99.44 E-value=7.7e-13 Score=115.39 Aligned_cols=101 Identities=12% Similarity=0.106 Sum_probs=87.4
Q ss_pred hhhhhccHHHHHHHHHhhcCCCCCccccccccc------cccchHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhhccc
Q psy16761 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKS------RHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTA 75 (261)
Q Consensus 2 ~LL~~~w~ell~l~~a~rs~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~ld~~E~~~Lkaivlf~p~ 75 (261)
+|||++|.|+++++.|||+.+.+++.++.++.. +..+..+.++.+++++.+|+++++|.+||+|||||++|+ +
T Consensus 104 ~LLk~~~~el~~L~~a~~~~~~~~~l~~~~g~~~~~~~~~~~g~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~n-d 182 (266)
T 2r40_D 104 TLLKACSSEVMMLRVARRYDAATDSVLFANNQAYTRDNYRKAGMAYVIEDLLHFCRCMYSMMMDNVHYALLTAIVIFS-D 182 (266)
T ss_dssp HHHHHHHHHHHHHHHHTTEETTTTEEECTTSCEECHHHHHHTTCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTS-C
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceecHHHHhhcCHHHHHHHHHHHHHHHhcccCCHHHHHHHhhheeec-C
Confidence 699999999999999999988888877776621 122445678888999999999999999999999999999 9
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHhhh
Q psy16761 76 FTSRRELAGHLLLAESWRELFILGLAQY 103 (261)
Q Consensus 76 f~~L~~~dqv~lLq~~~~e~l~L~~a~~ 103 (261)
.+||++..+|+.+|+.+..++.-++...
T Consensus 183 ~~gL~~~~~v~~lq~~~~~aL~~y~~~~ 210 (266)
T 2r40_D 183 RPGLEQPLLVEEIQRYYLNTLRVYILNQ 210 (266)
T ss_dssp CTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999988665543
No 71
>2iz2_A FTZ-F1 alpha, nuclear hormone receptor FTZ-F1; nuclear protein, phosphorylation, PAIR-RULE protein; 2.8A {Drosophila melanogaster} PDB: 2xhs_A
Probab=99.44 E-value=1.8e-13 Score=117.79 Aligned_cols=101 Identities=12% Similarity=0.111 Sum_probs=84.0
Q ss_pred hhhhhccHHHHHHHHHhhcCC--CCCccccccccc------cccchHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhhc
Q psy16761 2 LLLAESWRELFILGLAQYLPS--LDLGELVESCKS------RHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFK 73 (261)
Q Consensus 2 ~LL~~~w~ell~l~~a~rs~~--~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~ld~~E~~~Lkaivlf~ 73 (261)
+|||++|.|+++++.|+|+.+ .++...+.++.. ...++.+..+.+++++.+|+++++|.+||+|||||++|+
T Consensus 82 ~LLk~~~~el~~L~~a~rs~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ld~~E~~lLkAivL~n 161 (243)
T 2iz2_A 82 KLLQHSWSDMLVLDHLHHRIHNGLPDETQLNNGQVFNLMSLGLLGVPQLGDYFNELQNKLQDLKFDMGDYVCMKFLILLN 161 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCCSCCBCSSSCBCCCCTTTTSSTTSSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCceeecCCcccChhhHhhcchHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC
Confidence 699999999999999999865 345555665521 112334456788999999999999999999999999999
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHhh
Q psy16761 74 TAFTSRRELAGHLLLAESWRELFILGLAQ 102 (261)
Q Consensus 74 p~f~~L~~~dqv~lLq~~~~e~l~L~~a~ 102 (261)
|+.+||++..+++.+|+.+..++.-++..
T Consensus 162 pd~~gL~~~~~v~~lq~~~~~aL~~y~~~ 190 (243)
T 2iz2_A 162 PSVRGIVNRKTVSEGHDNVQAALLDYTLT 190 (243)
T ss_dssp TTSTTCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998866554
No 72
>1ymt_A Steroidogenic factor 1; SF-1, ligand-binding domain, ligand, phosphatidyl glycerol, CO-repressor peptide, transcription; HET: DR9; 1.20A {Mus musculus} PDB: 3f7d_A* 1yp0_A* 1yow_A* 1zdt_A*
Probab=99.43 E-value=2.5e-13 Score=117.04 Aligned_cols=100 Identities=17% Similarity=0.162 Sum_probs=83.9
Q ss_pred hhhhhccHHHHHHHHHhhcCCC--CCccccccccc----c-----ccchHHHHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q psy16761 2 LLLAESWRELFILGLAQYLPSL--DLGELVESCKS----R-----HVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAIT 70 (261)
Q Consensus 2 ~LL~~~w~ell~l~~a~rs~~~--~~~~l~~~~~~----~-----~~~~~~~~~~~~~~~~~~~~l~ld~~E~~~Lkaiv 70 (261)
+|||++|.|+++++.|||+.+. ++..++.++.. . +....+.++.+++++.+|+++++|.+||+|||||+
T Consensus 81 ~LLk~~~~el~~L~~a~rs~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ld~~E~~lLkAiv 160 (246)
T 1ymt_A 81 TLLQNSWSELLVLDHIYRQVQYGKEDSILLVTGQEVELSTVAVQAGSLLHSLVLRAQELVLQLHALQLDRQEFVCLKFLI 160 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCTTEEECTTSCEEEHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCeeEecCCCccchhhhhhhcchhHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6999999999999999999764 56666666521 0 11224567789999999999999999999999999
Q ss_pred hhccccccccchhHHHHHHHHHHHHHHHHHh
Q psy16761 71 LFKTAFTSRRELAGHLLLAESWRELFILGLA 101 (261)
Q Consensus 71 lf~p~f~~L~~~dqv~lLq~~~~e~l~L~~a 101 (261)
+|+|+.+||++..+++.+|+.+..++.-++.
T Consensus 161 L~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~ 191 (246)
T 1ymt_A 161 LFSLDVKFLNNHSLVKDAQEKANAALLDYTL 191 (246)
T ss_dssp HTCSCGGGSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCcccccccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999875554
No 73
>1yye_A ER-beta, estrogen receptor beta; ER-beta, nuclear receptor, transcription factor, agonist; HET: 196; 2.03A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yy4_A*
Probab=99.43 E-value=6.8e-13 Score=115.88 Aligned_cols=100 Identities=16% Similarity=0.173 Sum_probs=80.6
Q ss_pred hhhhhccHHHHHHHHHhhcCCCCCcccccccc----cc---ccchHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhhcc
Q psy16761 2 LLLAESWRELFILGLAQYLPSLDLGELVESCK----SR---HVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKT 74 (261)
Q Consensus 2 ~LL~~~w~ell~l~~a~rs~~~~~~~l~~~~~----~~---~~~~~~~~~~~~~~~~~~~~l~ld~~E~~~Lkaivlf~p 74 (261)
.|||++|.|+++|+.|||+.+..+..++.++. .. ..+..+.++.+++++.+|+++++|.+||+|||||++|+|
T Consensus 67 ~LLk~~w~el~lL~~a~rs~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAIvLfnp 146 (268)
T 1yye_A 67 RLLESCWMEVLMMGLMWRSIDHPGKLIFAPDLVLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNS 146 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTEEEEETTEEEEGGGGGGSTTHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCceEecCCcccChhhHhhhccHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCC
Confidence 69999999999999999999887777776651 11 234556678888999999999999999999999999999
Q ss_pred ccccccc-------hhHHHHHHHHHHHHHHHHHh
Q psy16761 75 AFTSRRE-------LAGHLLLAESWRELFILGLA 101 (261)
Q Consensus 75 ~f~~L~~-------~dqv~lLq~~~~e~l~L~~a 101 (261)
+.++|++ .++++.+|+.+..++.-++.
T Consensus 147 d~~gLs~~~~~~~~~~~v~~~q~~~~~aL~~y~~ 180 (268)
T 1yye_A 147 SMYPLVTATQDADSSRKLAHLLNAVTDALVWVIA 180 (268)
T ss_dssp CC----------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999864 67899999999998875554
No 74
>3kmr_A Retinoic acid receptor alpha; nuclear receptor transcription factor ligand binding domain, binding, metal-binding, nucleus, phosphoprotein; HET: EQN; 1.80A {Homo sapiens} PDB: 3kmz_B* 3a9e_B* 4dm6_A* 1xap_A* 4dm8_A* 2lbd_A* 3lbd_A* 4lbd_A*
Probab=99.43 E-value=2.4e-13 Score=118.61 Aligned_cols=102 Identities=15% Similarity=0.078 Sum_probs=86.8
Q ss_pred hhhhhccHHHHHHHHHhhcCCCCCccccccccc--c----ccchHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhhccc
Q psy16761 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKS--R----HVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTA 75 (261)
Q Consensus 2 ~LL~~~w~ell~l~~a~rs~~~~~~~l~~~~~~--~----~~~~~~~~~~~~~~~~~~~~l~ld~~E~~~Lkaivlf~p~ 75 (261)
+|||++|.|+++++.|+|+.+.++..++.++.. + ..+.....+.+.+++.+|+++++|.+||+|||||++|+|+
T Consensus 104 ~LLk~~~~el~lL~~a~~s~~~~~~l~~~~g~~~~~~~~~~~g~~~~~~~i~~~~~~l~~L~ld~~E~~lLkAIvL~~pd 183 (266)
T 3kmr_A 104 TLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGD 183 (266)
T ss_dssp HHHHHHHHHHHHHHHHHTEETTTTEEECTTSBEEEHHHHHHHTTGGGHHHHHHHHHHHGGGCCCHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCeEEecCCcccchHHHhhcchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Confidence 699999999999999999998877777776621 1 1223345667789999999999999999999999999999
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHhhh
Q psy16761 76 FTSRRELAGHLLLAESWRELFILGLAQY 103 (261)
Q Consensus 76 f~~L~~~dqv~lLq~~~~e~l~L~~a~~ 103 (261)
.+||++..+|+.+|+.+..++.-++...
T Consensus 184 ~~gL~~~~~ve~lq~~~~~aL~~y~~~~ 211 (266)
T 3kmr_A 184 RQDLEQPDRVDMLQEPLLEALKVYVRKR 211 (266)
T ss_dssp STTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999998666544
No 75
>3oll_A Estrogen receptor beta; steroid binding, phosphorylation, hormone receptor-activator; HET: PTR EST; 1.50A {Homo sapiens} SCOP: a.123.1.1 PDB: 1u3s_A* 1u3q_A* 1x78_A* 1x7b_A* 1x7j_A* 1x76_A* 2yjd_A* 3ols_A* 3omo_A* 3omp_A* 3omq_A* 1u3r_A* 1u9e_A* 1qkm_A* 2giu_A* 1nde_A* 2jj3_A* 2i0g_A* 2qtu_A* 2z4b_A* ...
Probab=99.43 E-value=1.4e-12 Score=111.79 Aligned_cols=100 Identities=16% Similarity=0.164 Sum_probs=82.7
Q ss_pred hhhhhccHHHHHHHHHhhcCCCCCcccccccc----c---cccchHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhhcc
Q psy16761 2 LLLAESWRELFILGLAQYLPSLDLGELVESCK----S---RHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKT 74 (261)
Q Consensus 2 ~LL~~~w~ell~l~~a~rs~~~~~~~l~~~~~----~---~~~~~~~~~~~~~~~~~~~~~l~ld~~E~~~Lkaivlf~p 74 (261)
+|||++|.|+++++.|||+.+.++..++.++. . ...+..+.++.+++++.+|+++++|.+||+|||||++|+|
T Consensus 69 ~LLk~~~~el~~L~~a~~s~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~~p 148 (240)
T 3oll_A 69 RLLESCWMEVLMMGLMWRSIDHPGKLIFAPDLVLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNS 148 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTEEEEETBEEEEGGGGGGSTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHccCCCCeeEecCCcccchhhHHHHhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCC
Confidence 69999999999999999999888777777652 1 1234566678888999999999999999999999999999
Q ss_pred ccccccc-------hhHHHHHHHHHHHHHHHHHh
Q psy16761 75 AFTSRRE-------LAGHLLLAESWRELFILGLA 101 (261)
Q Consensus 75 ~f~~L~~-------~dqv~lLq~~~~e~l~L~~a 101 (261)
+.+||++ .++++.+|+.+..++.-++.
T Consensus 149 d~~gLs~~~~~~~~~~~v~~~q~~~~~aL~~y~~ 182 (240)
T 3oll_A 149 SMYPLVTATQDADSSRKLAHLLNAVTDALVWVIA 182 (240)
T ss_dssp CCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcccccchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 9998864 45788888888888775544
No 76
>3b0t_A Vitamin D3 receptor; nuclear receptor, transcription, gene regulation; HET: MCZ; 1.30A {Homo sapiens} PDB: 3a40_X* 1s0z_A* 1s19_A* 2ham_A* 2har_A* 2has_A* 1txi_A* 2hb8_A* 2hb7_A* 3a3z_X* 3a78_A* 3auq_A* 3aur_A* 3ax8_A* 3cs4_A* 3cs6_A* 1ie9_A* 1db1_A* 1ie8_A* 3kpz_A* ...
Probab=99.43 E-value=3.3e-13 Score=116.76 Aligned_cols=101 Identities=14% Similarity=0.034 Sum_probs=85.6
Q ss_pred hhhhhccHHHHHHHHHhhcCCCCCcccccc-cc--cc----ccchH-HHHHHHHHHHHHhhcCCCChHHHHHHHHHHhhc
Q psy16761 2 LLLAESWRELFILGLAQYLPSLDLGELVES-CK--SR----HVDIE-EEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFK 73 (261)
Q Consensus 2 ~LL~~~w~ell~l~~a~rs~~~~~~~l~~~-~~--~~----~~~~~-~~~~~~~~~~~~~~~l~ld~~E~~~Lkaivlf~ 73 (261)
+|||++|.|+++++.|+|+.+.++..++.+ +. .+ ..+.. +.++.+++++.+|+++++|.+||+|||||++|+
T Consensus 92 ~LLk~~~~el~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~~ 171 (254)
T 3b0t_A 92 VLLKSSAIEVIMLRSNESFTMDDMSWTCGNQDYKYRVSDVTKAGHSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVS 171 (254)
T ss_dssp HHHHHHHHHHHHHHGGGTEETTTTEEECSSGGGEECHHHHHTTTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHSC
T ss_pred HHHHHhhHHHHHHHHHHHhccCCCeEEecCCCeeeeHHHHHHcCCcHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Confidence 699999999999999999988777766664 31 11 11333 667888899999999999999999999999999
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHhh
Q psy16761 74 TAFTSRRELAGHLLLAESWRELFILGLAQ 102 (261)
Q Consensus 74 p~f~~L~~~dqv~lLq~~~~e~l~L~~a~ 102 (261)
|+.+||++..+|+.+|+.+..++.-++..
T Consensus 172 pd~~gL~~~~~v~~lq~~~~~aL~~y~~~ 200 (254)
T 3b0t_A 172 PDRPGVQDAALIEAIQDRLSNTLQTYIRC 200 (254)
T ss_dssp SCSTTCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999866553
No 77
>1xpc_A Estrogen receptor; nuclear receptor, transcription factor, ER-alpha, antagonist hormone-growth factor receptor complex; HET: AIT; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 1sj0_A* 1xp1_A* 1xp9_A* 1xp6_A* 1yim_A* 1yin_A* 3ert_A* 1r5k_A* 3erd_A* 1l2i_A* 2iok_A* 1a52_A* 2ouz_A* 1ere_A* 1err_A* 2qxs_A* 3q95_A* 3q97_A* 2b1z_A* 1zky_A* ...
Probab=99.42 E-value=3e-13 Score=116.65 Aligned_cols=100 Identities=17% Similarity=0.190 Sum_probs=84.9
Q ss_pred hhhhhccHHHHHHHHHhhcCCCCCcccccccc----c---cccchHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhhcc
Q psy16761 2 LLLAESWRELFILGLAQYLPSLDLGELVESCK----S---RHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKT 74 (261)
Q Consensus 2 ~LL~~~w~ell~l~~a~rs~~~~~~~l~~~~~----~---~~~~~~~~~~~~~~~~~~~~~l~ld~~E~~~Lkaivlf~p 74 (261)
.|||++|.|+++++.|||+.+.++..++.++. . ...+..+.++.+++++.+|+++++|.+||+|||||++|+|
T Consensus 71 ~LLk~~~~el~~L~~a~~s~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~~p 150 (248)
T 1xpc_A 71 HLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNS 150 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTEEEEETTEEEEHHHHTTSTTHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhHHHHHHHHHHHhccccCceeecCCceeCccchhhhccHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCC
Confidence 69999999999999999999887777776652 1 1234556678888999999999999999999999999999
Q ss_pred cc--------ccccchhHHHHHHHHHHHHHHHHHh
Q psy16761 75 AF--------TSRRELAGHLLLAESWRELFILGLA 101 (261)
Q Consensus 75 ~f--------~~L~~~dqv~lLq~~~~e~l~L~~a 101 (261)
+. +||.+..+++.+|+.+..++.-++.
T Consensus 151 d~~~ls~~~~~gl~~~~~v~~lq~~~~~aL~~y~~ 185 (248)
T 1xpc_A 151 GVYTFLSSTLKSLEEKDHIHRVLDKITDTLIHLMA 185 (248)
T ss_dssp TTTCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 98 6777788999999999999875554
No 78
>1xdk_B RAR-beta, retinoic acid receptor, beta; nuclear receptor, coactivator, ligand, hormone/growth factor receptor complex; HET: REA; 2.90A {Mus musculus} SCOP: a.123.1.1
Probab=99.42 E-value=2.3e-13 Score=120.85 Aligned_cols=102 Identities=15% Similarity=0.067 Sum_probs=87.0
Q ss_pred hhhhhccHHHHHHHHHhhcCCCCCccccccccc------cccchHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhhccc
Q psy16761 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKS------RHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTA 75 (261)
Q Consensus 2 ~LL~~~w~ell~l~~a~rs~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~ld~~E~~~Lkaivlf~p~ 75 (261)
.|||++|.|+++|+.|+|+.+.++..++.++.. ...+..+.++.+.+++.+|+++++|.+||+|||||++|+|+
T Consensus 107 ~LLk~~~~el~lL~~a~~s~~~~~~l~~~~g~~~~~~~~~~~g~~~~~~~i~~~~~~l~~L~ld~~E~~lLkAivL~~pd 186 (303)
T 1xdk_B 107 TLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGD 186 (303)
T ss_dssp HHHHHHHHHHHHHHHHTTEETTTTEEECTTCBEEEHHHHHHTTTGGGHHHHHHHHHHHGGGCCCHHHHHHHHHHHHSCSC
T ss_pred HHHHhhHHHHHHHHHHHHhcccCCeEEecCCceecHHHHhhcCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCC
Confidence 699999999999999999998877777776621 11233445677889999999999999999999999999999
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHhhh
Q psy16761 76 FTSRRELAGHLLLAESWRELFILGLAQY 103 (261)
Q Consensus 76 f~~L~~~dqv~lLq~~~~e~l~L~~a~~ 103 (261)
.+||.+..+|+.+|+.+..++.-++...
T Consensus 187 ~~gL~~~~~ve~lq~~~~~aL~~y~~~~ 214 (303)
T 1xdk_B 187 RQDLEEPTKVDKLQEPLLEALKIYIRKR 214 (303)
T ss_dssp SSSCSSHHHHHHHTHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998666543
No 79
>3n00_A REV-ERBA-alpha; reverba ncorid1, anti-parallel B-sheet, transcription regula; 2.60A {Homo sapiens}
Probab=99.42 E-value=8.7e-13 Score=113.76 Aligned_cols=102 Identities=13% Similarity=0.089 Sum_probs=81.3
Q ss_pred hhhhhccHHHHHHHHHhhcCCCCCcccccccc----c--cccchHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhhccc
Q psy16761 2 LLLAESWRELFILGLAQYLPSLDLGELVESCK----S--RHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTA 75 (261)
Q Consensus 2 ~LL~~~w~ell~l~~a~rs~~~~~~~l~~~~~----~--~~~~~~~~~~~~~~~~~~~~~l~ld~~E~~~Lkaivlf~p~ 75 (261)
+|||++|.|+++|+.|++..+..+..++.++. + ...+..+.++.+.+++.+|+++++|.+||+|||||++|+|+
T Consensus 101 ~LLk~~~~el~lL~~a~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~l~~L~ld~~E~~lLkAIvL~npd 180 (245)
T 3n00_A 101 TLLKAGTFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLSAMFDFSEKLNSLALTEEELGLFTAVVLVSAD 180 (245)
T ss_dssp HHHHHHHHHHHHHHHHHTCCSCC--------------CCGGGTTHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCeEEecCCCeecHHHHhhccHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 69999999999999999876666666665552 1 12345677888999999999999999999999999999999
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHhhh
Q psy16761 76 FTSRRELAGHLLLAESWRELFILGLAQY 103 (261)
Q Consensus 76 f~~L~~~dqv~lLq~~~~e~l~L~~a~~ 103 (261)
.+||++..+++.+|+.+..++.-++...
T Consensus 181 ~~gL~~~~~ve~lq~~~~~aL~~y~~~~ 208 (245)
T 3n00_A 181 RSGMENSASVEQLQETLLRALRALVLKN 208 (245)
T ss_dssp CTTCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999988666543
No 80
>1g2n_A Ultraspiracle protein; antiparallel alpha-helical sandwich, structural proteomics in europe, spine, structural genomics, gene regulation; HET: EPH; 1.65A {Heliothis virescens} SCOP: a.123.1.1 PDB: 2r40_A* 1r20_A* 1r1k_A* 3ixp_A*
Probab=99.42 E-value=2.9e-13 Score=117.85 Aligned_cols=101 Identities=17% Similarity=0.189 Sum_probs=81.9
Q ss_pred hhhhhccHHHHHHHHHhhcCCC----CCc--------------cccccccc------cccchHHHH-HHHHHHHHHhhcC
Q psy16761 2 LLLAESWRELFILGLAQYLPSL----DLG--------------ELVESCKS------RHVDIEEEV-IRFQSVLNEFKVL 56 (261)
Q Consensus 2 ~LL~~~w~ell~l~~a~rs~~~----~~~--------------~l~~~~~~------~~~~~~~~~-~~~~~~~~~~~~l 56 (261)
.|||++|.|+++++.|||+.+. .+. .++.++.. +..+..+.. +.+.+++.+|+++
T Consensus 78 ~LLk~~w~el~lL~~a~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 157 (264)
T 1g2n_A 78 LLIKGSWNELLLFAIAWRSMEFLTEERDGVDGTGNRTTSPPQLMCLMPGMTLHRNSALQAGVGQIFDRVLSELSLKMRTL 157 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGSCCC----------CCCCCCEEEEETTEEEEHHHHHHHTCHHHHHHHHHHTHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHccccccccccccccccccccccccceeecCCcccCchhhhhccHHHHHHHHHHHHHHHHHHh
Confidence 6999999999999999999877 554 55555421 112334444 6788999999999
Q ss_pred CCChHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHhh
Q psy16761 57 NIDPYEYDYIRAITLFKTAFTSRRELAGHLLLAESWRELFILGLAQ 102 (261)
Q Consensus 57 ~ld~~E~~~Lkaivlf~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~ 102 (261)
++|.+||+|||||++|+|+.+||++..+++.+|+.+..++.-++..
T Consensus 158 ~ld~~E~~lLkAivL~npd~~gL~~~~~ve~lq~~~~~aL~~y~~~ 203 (264)
T 1g2n_A 158 RVDQAEYVALKAIILLNPDVKGLKNRQEVEVLREKMFLCLDEYCRR 203 (264)
T ss_dssp TCCHHHHHHHHHHHHSCTTCTTCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998765543
No 81
>1l2j_A Estrogen receptor beta; nuclear receptor, transcription factor, antagonist transcription receptor; HET: ETC; 2.95A {Homo sapiens} SCOP: a.123.1.1
Probab=99.42 E-value=7.8e-13 Score=115.67 Aligned_cols=100 Identities=16% Similarity=0.183 Sum_probs=78.4
Q ss_pred hhhhhccHHHHHHHHHhhcCCCCCcccccccc----c--c-ccchHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhhcc
Q psy16761 2 LLLAESWRELFILGLAQYLPSLDLGELVESCK----S--R-HVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKT 74 (261)
Q Consensus 2 ~LL~~~w~ell~l~~a~rs~~~~~~~l~~~~~----~--~-~~~~~~~~~~~~~~~~~~~~l~ld~~E~~~Lkaivlf~p 74 (261)
+|||++|.|+++|+.|||+.+.++..++.++. . . ..+..+.++.+++++.+|+++++|.+||+|||||++|+|
T Consensus 95 ~LLk~~w~el~iL~~a~rs~~~~~~l~~~~g~~~~~~~~~~~~g~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAIvLfnp 174 (271)
T 1l2j_A 95 RLLESCWMEVLMMGLMWRSIDHPGKLIFAPDLVLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNS 174 (271)
T ss_dssp HHHHTTHHHHHHHHHHHHTSSSTTEECSSSSCCEETGGGGGSTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCeeeecCCccccchhhhhhccHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCC
Confidence 69999999999999999999888777776652 1 1 234556778888999999999999999999999999999
Q ss_pred ccccccch-------hHHHHHHHHHHHHHHHHHh
Q psy16761 75 AFTSRREL-------AGHLLLAESWRELFILGLA 101 (261)
Q Consensus 75 ~f~~L~~~-------dqv~lLq~~~~e~l~L~~a 101 (261)
+.++|++. ++++.+|+.+.+++.-++.
T Consensus 175 d~~gLs~~~~~~~~~~~v~~~q~~~~~aL~~y~~ 208 (271)
T 1l2j_A 175 SMYPLVTATQDADSSRKLAHLLNAVTDALVWVIA 208 (271)
T ss_dssp ----CCCCGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888663 5677788888887765444
No 82
>2nxx_A Ultraspiracle (USP, NR2B4); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}
Probab=99.41 E-value=5.3e-13 Score=114.20 Aligned_cols=101 Identities=18% Similarity=0.227 Sum_probs=84.0
Q ss_pred hhhhhccHHHHHHHHHhhcCCCCCcccccccc----c--cccchHHH-HHHHHHHHHHhhcCCCChHHHHHHHHHHhhcc
Q psy16761 2 LLLAESWRELFILGLAQYLPSLDLGELVESCK----S--RHVDIEEE-VIRFQSVLNEFKVLNIDPYEYDYIRAITLFKT 74 (261)
Q Consensus 2 ~LL~~~w~ell~l~~a~rs~~~~~~~l~~~~~----~--~~~~~~~~-~~~~~~~~~~~~~l~ld~~E~~~Lkaivlf~p 74 (261)
.|||++|.|+++++.|||+.+.++..++.++. + ...++... .+.+++++.+|+++++|.+||+|||||++|+|
T Consensus 73 ~LLk~~~~el~~L~~a~rs~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ld~~E~~lLkaivL~~p 152 (235)
T 2nxx_A 73 QLLRAGWNELLIAAFSHRSMQAQDAIVLATGLTVNKSTAHAVGVGNIYDRVLSELVNKMKEMKMDKTELGCLRAIILYNP 152 (235)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSSSSEECSSSCEECSSSCSSSSCSSSHHHHHHHTHHHHHHHTCCHHHHHHHHHHHHCCT
T ss_pred HHHHHhHHHHHHHHHHHhcccCCCceEecCCcccccchhhhhchHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 69999999999999999999887777777652 1 11122222 34578899999999999999999999999999
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHhh
Q psy16761 75 AFTSRRELAGHLLLAESWRELFILGLAQ 102 (261)
Q Consensus 75 ~f~~L~~~dqv~lLq~~~~e~l~L~~a~ 102 (261)
+.+||++..+++.+|+.+..++.-++..
T Consensus 153 d~~gL~~~~~v~~~q~~~~~aL~~y~~~ 180 (235)
T 2nxx_A 153 DVRGIKSVQEVEMLREKIYGVLEEYTRT 180 (235)
T ss_dssp TSTTCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998765543
No 83
>1xvp_B Orphan nuclear receptor NR1I3; CAR, RXR, citco, SRC1, DNA binding protein; HET: F15 CID; 2.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xv9_B* 1xnx_A* 1xls_E*
Probab=99.40 E-value=5.1e-13 Score=115.04 Aligned_cols=99 Identities=14% Similarity=0.056 Sum_probs=81.9
Q ss_pred hhhhhccHHHHHHHHHhhcCCCCCcccccccc--c----cccchH-HHHHHHHHHHHHhhcCCCChHHHHHHHHHHhhcc
Q psy16761 2 LLLAESWRELFILGLAQYLPSLDLGELVESCK--S----RHVDIE-EEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKT 74 (261)
Q Consensus 2 ~LL~~~w~ell~l~~a~rs~~~~~~~l~~~~~--~----~~~~~~-~~~~~~~~~~~~~~~l~ld~~E~~~Lkaivlf~p 74 (261)
+|||++|.|+++++.|+|+.+..++ ++.++. . ...+.. +..+.+++++.+|+++++|.+||+|||||++|+|
T Consensus 90 ~LLk~~~~el~~l~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~L~ld~~E~~lLkAivL~~p 168 (246)
T 1xvp_B 90 SLLKGAAVEICHIVLNTTFCLQTQN-FLCGPLRYTIEDGARVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSP 168 (246)
T ss_dssp HHHHHHHHHHHHHHHGGGEETTTTE-EECSSCEECHHHHHHHTCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHSCS
T ss_pred HHHHhhHHHHHHHHHHHHhccccCe-EeeCCeeecHHHHHHccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC
Confidence 6999999999999999998776554 333321 1 111222 5677888999999999999999999999999999
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHh
Q psy16761 75 AFTSRRELAGHLLLAESWRELFILGLA 101 (261)
Q Consensus 75 ~f~~L~~~dqv~lLq~~~~e~l~L~~a 101 (261)
+.+||++..+|+.+|+.+..++.-++.
T Consensus 169 d~~gL~~~~~v~~lq~~~~~aL~~y~~ 195 (246)
T 1xvp_B 169 DRPGVTQRDEIDQLQEEMALTLQSYIK 195 (246)
T ss_dssp SSTTCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999875554
No 84
>2nxx_E Ecdysone receptor (ECR, NRH1); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}
Probab=99.40 E-value=1.7e-12 Score=111.97 Aligned_cols=100 Identities=15% Similarity=0.127 Sum_probs=85.8
Q ss_pred hhhhhccHHHHHHHHHhhcCCCCCccccccccc------cccchHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhhccc
Q psy16761 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKS------RHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTA 75 (261)
Q Consensus 2 ~LL~~~w~ell~l~~a~rs~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~ld~~E~~~Lkaivlf~p~ 75 (261)
.|||++|.|+++++.|+|+.+.++..++.++.. +..+..+.++.+++++.+|+++++|.+||+|||||++|+ +
T Consensus 88 ~LLk~~~~el~~L~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~l~~L~ld~~E~~lLkAivL~~-d 166 (248)
T 2nxx_E 88 ALLKACSSEVMMFRMARRYDVQTDSILFVNNQPYSRDSYNLAGMGETIEDLLHFCRTMYSMRVDNAEYALLTAIVIFS-E 166 (248)
T ss_dssp HHHHHHHHHHHHHHHHTTEETTTTEEECTTSCEECHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTC-C
T ss_pred HHHHHhHHHHHHHHHHHHhcCCCCeEEecCCceecHHHHHhcchHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC-C
Confidence 699999999999999999988778777776521 112445677888899999999999999999999999997 8
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHhh
Q psy16761 76 FTSRRELAGHLLLAESWRELFILGLAQ 102 (261)
Q Consensus 76 f~~L~~~dqv~lLq~~~~e~l~L~~a~ 102 (261)
.+||++..+++.+|+.+..++.-++..
T Consensus 167 ~~gL~~~~~v~~lq~~~~~aL~~y~~~ 193 (248)
T 2nxx_E 167 RPALIEGWKVEKIQEIYLEALRAYVDN 193 (248)
T ss_dssp CSSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999998865543
No 85
>1z5x_E Ecdysone receptor ligand binding domain; ponasterone A, nuclear receptor, ECR, USP, hormone/growth factor receptor complex; HET: P1A; 3.07A {Bemisia tabaci}
Probab=99.40 E-value=1.4e-12 Score=116.21 Aligned_cols=99 Identities=16% Similarity=0.150 Sum_probs=85.9
Q ss_pred hhhhhccHHHHHHHHHhhcCCCCCccccccccc------cccchHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhhccc
Q psy16761 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKS------RHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTA 75 (261)
Q Consensus 2 ~LL~~~w~ell~l~~a~rs~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~ld~~E~~~Lkaivlf~p~ 75 (261)
+|||++|.|+++|+.|||+.+..+..++.++.. ...+..+.++.+++++.+|+++++|.+||+|||||++|+ +
T Consensus 152 ~LLk~~w~el~lL~~a~rs~~~~~~l~~~~g~~~~~~~~~~~g~~~~~~~i~~~~~~l~~L~ld~~E~alLkAIvLf~-d 230 (310)
T 1z5x_E 152 ALLKACSSEVMMFRMARRYDAETDSILFATNQPYTRESYTVAGMGDTVEDLLRFCRHMCAMKVDNAEYALLTAIVIFS-E 230 (310)
T ss_dssp HHHHHHHHHHHHHHHHTTEETTTTEEECTTSCEECHHHHHHTTTHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTC-C
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCeEEeCCCccccHHHHHhcchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-C
Confidence 699999999999999999988878777776521 112445677888999999999999999999999999996 8
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHh
Q psy16761 76 FTSRRELAGHLLLAESWRELFILGLA 101 (261)
Q Consensus 76 f~~L~~~dqv~lLq~~~~e~l~L~~a 101 (261)
.+||.+..+|+.+|+.+..++.-++.
T Consensus 231 ~~gL~~~~~Ve~lqe~~~~aL~~y~~ 256 (310)
T 1z5x_E 231 RPSLSEGWKVEKIQEIYIEALKAYVE 256 (310)
T ss_dssp CTTCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999886654
No 86
>2o4j_A Vitamin D3 receptor; nuclear receptor-ligand complex, hormone/growth factor receptor complex; HET: VD4; 1.74A {Rattus norvegicus} SCOP: a.123.1.1 PDB: 1rk3_A* 1rjk_A* 1rkh_A* 1rkg_A* 2o4r_A*
Probab=99.40 E-value=5.8e-13 Score=117.75 Aligned_cols=102 Identities=15% Similarity=0.018 Sum_probs=86.0
Q ss_pred hhhhhccHHHHHHHHHhhcCCCCCcccccc-ccc--c----ccchH-HHHHHHHHHHHHhhcCCCChHHHHHHHHHHhhc
Q psy16761 2 LLLAESWRELFILGLAQYLPSLDLGELVES-CKS--R----HVDIE-EEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFK 73 (261)
Q Consensus 2 ~LL~~~w~ell~l~~a~rs~~~~~~~l~~~-~~~--~----~~~~~-~~~~~~~~~~~~~~~l~ld~~E~~~Lkaivlf~ 73 (261)
+|||++|.|+++++.|||+.+.++..++.+ +.. + ..+.. +.++.+++++.+|+++++|.+||+|||||++|+
T Consensus 95 ~LLk~~~~el~lL~~a~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAIvLfn 174 (292)
T 2o4j_A 95 VLLKSSAIEVIMLRSNQSFTMDDMSWDCGSQDYKYDVTDVSKAGHTLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVS 174 (292)
T ss_dssp HHHHHHHHHHHHHHGGGTEETTTTEEECSSGGGEECHHHHHTTTCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHSC
T ss_pred HHHHHhHHHHHHHHHHHHhcCCCCeEEecCCCeEEcHHHHHhcCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 699999999999999999888777766663 311 1 11333 667888899999999999999999999999999
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHhhh
Q psy16761 74 TAFTSRRELAGHLLLAESWRELFILGLAQY 103 (261)
Q Consensus 74 p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~ 103 (261)
|+.+||.+..+|+.+|+.+..++.-++...
T Consensus 175 pd~~gL~~~~~Ve~lq~~~~~aL~~y~~~~ 204 (292)
T 2o4j_A 175 PDRPGVQDAKLVEAIQDRLSNTLQTYIRCR 204 (292)
T ss_dssp TTSTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998666543
No 87
>3plz_A FTZ-F1 related protein; alpha helical sandwhich, family five, TRAN factor, transcription-receptor-agonist comple; HET: 470; 1.75A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yok_A* 1yuc_A* 4dor_A* 1zdu_A* 4dos_A* 1zh7_A 1pk5_A 3f5c_A
Probab=99.39 E-value=7.2e-13 Score=115.04 Aligned_cols=101 Identities=14% Similarity=0.152 Sum_probs=84.5
Q ss_pred hhhhhccHHHHHHHHHhhcCCC--CCccccccccc-------cccch--HHHHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q psy16761 2 LLLAESWRELFILGLAQYLPSL--DLGELVESCKS-------RHVDI--EEEVIRFQSVLNEFKVLNIDPYEYDYIRAIT 70 (261)
Q Consensus 2 ~LL~~~w~ell~l~~a~rs~~~--~~~~l~~~~~~-------~~~~~--~~~~~~~~~~~~~~~~l~ld~~E~~~Lkaiv 70 (261)
+|||++|.|+++++.|+|+.+. +++.++.++.. ...+. .+.++.+.+++.+|+++++|.+||+|||||+
T Consensus 92 ~LLk~~~~el~lL~~a~rs~~~~~~~~l~~~~g~~~~~~~~~~~~g~~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAiv 171 (257)
T 3plz_A 92 KLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLV 171 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCBTTEEECTTSCEEEHHHHHTTSCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCccChHHHhhhcCCcHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6999999999999999998654 35566665521 01122 5667889999999999999999999999999
Q ss_pred hhccccccccchhHHHHHHHHHHHHHHHHHhh
Q psy16761 71 LFKTAFTSRRELAGHLLLAESWRELFILGLAQ 102 (261)
Q Consensus 71 lf~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~ 102 (261)
+|+|+.+||++..+++.+|+.+..++.-++..
T Consensus 172 L~npd~~gL~~~~~ve~lq~~~~~aL~~y~~~ 203 (257)
T 3plz_A 172 LFSLDVKNLENFQLVEGVQEQVNAALLDYTMC 203 (257)
T ss_dssp HSCTTCCSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998866554
No 88
>1sqn_A PR, progesterone receptor; nuclear receptor, steroid receptor, norethindrone, birth control, hormone/growth factor receptior complex; HET: NDR; 1.45A {Homo sapiens} SCOP: a.123.1.1 PDB: 3g8o_A* 3g8n_A* 3d90_A* 1e3k_A* 1sr7_A* 1zuc_B* 3zr7_A* 2w8y_A* 3zra_A* 3zrb_A* 4a2j_A* 4apu_A* 1a28_A* 2ovh_A* 2ovm_A* 3hq5_A* 3kba_A*
Probab=99.39 E-value=3.8e-13 Score=117.05 Aligned_cols=100 Identities=16% Similarity=0.220 Sum_probs=83.2
Q ss_pred hhhhhccHHHHHHHHHhhcCCCCCc--ccccccc----c--cccchHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhhc
Q psy16761 2 LLLAESWRELFILGLAQYLPSLDLG--ELVESCK----S--RHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFK 73 (261)
Q Consensus 2 ~LL~~~w~ell~l~~a~rs~~~~~~--~l~~~~~----~--~~~~~~~~~~~~~~~~~~~~~l~ld~~E~~~Lkaivlf~ 73 (261)
.|||++|.|+++++.|||+.+..+. .++.++. . +..+..+.++.+++++.+|+++++|.+||+|||||++|+
T Consensus 77 ~LLk~~~~el~~L~~a~~s~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~L~ld~~E~~lLkAIvLfn 156 (261)
T 1sqn_A 77 TLIQYSWMSLMVFGLGWRSYKHVSGQMLYFAPDLILNEQRMKESSFYSLCLTMWQIPQEFVKLQVSQEEFLCMKVLLLLN 156 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSEEEETTEEECGGGCCSHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTS
T ss_pred HHHHhhHHHHHHHHHHHHhhhcCCCCeEEeCCCcccchHhhhhhhHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC
Confidence 6999999999999999999766432 3344441 1 122445667889999999999999999999999999999
Q ss_pred c-ccccccchhHHHHHHHHHHHHHHHHHh
Q psy16761 74 T-AFTSRRELAGHLLLAESWRELFILGLA 101 (261)
Q Consensus 74 p-~f~~L~~~dqv~lLq~~~~e~l~L~~a 101 (261)
| +.+||++..+++.+|+.+..++.-++.
T Consensus 157 p~~~~gL~~~~~ve~lq~~~~~aL~~y~~ 185 (261)
T 1sqn_A 157 TIPLEGLRSQTQFEEMRSSYIRELIKAIG 185 (261)
T ss_dssp EECTTCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccccHHHHHHHHHHHHHHHHHHHH
Confidence 9 899999999999999999999876654
No 89
>1nrl_A Orphan nuclear receptor PXR; PXR, xenobiotic, SRC-1, ligand binding domain, transcription; HET: SRL; 2.00A {Homo sapiens} SCOP: a.123.1.1 PDB: 1ilh_A* 1ilg_A* 1m13_A* 2qnv_A* 3r8d_A* 3ctb_A 3ctc_A 3hvl_A* 1skx_A* 2o9i_A*
Probab=99.39 E-value=7.7e-13 Score=118.15 Aligned_cols=102 Identities=15% Similarity=-0.010 Sum_probs=85.7
Q ss_pred hhhhhccHHHHHHHHHhhcCCCCCccccccc---ccc-ccchH-HHHHHHHHHHHHhhcCCCChHHHHHHHHHHhhcccc
Q psy16761 2 LLLAESWRELFILGLAQYLPSLDLGELVESC---KSR-HVDIE-EEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTAF 76 (261)
Q Consensus 2 ~LL~~~w~ell~l~~a~rs~~~~~~~l~~~~---~~~-~~~~~-~~~~~~~~~~~~~~~l~ld~~E~~~Lkaivlf~p~f 76 (261)
+|||++|.|+++|+.|||+.+.++..++++. .+. ..+.. +.++.+++++.+|+++++|.+||+|||||++|+|+.
T Consensus 156 ~LLk~~w~el~lL~~a~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~i~~~~~~l~~L~ld~~E~alLkAIvLfnpd~ 235 (316)
T 1nrl_A 156 SLLKGAAFELCQLRFNTVFNAETGTWECGRLSYCLEDTAGGFQQLLLEPMLKFHYMLKKLQLHEEEYVLMQAISLFSPDR 235 (316)
T ss_dssp HHHHHHHHHHHHHHHHHTEETTTTEEEETTEEEEECCCSSCHHHHTTSHHHHHHHHHHHTCCCHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCeEEECCEeecHHHHhccccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Confidence 6999999999999999999887776665431 111 12444 556788899999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHhhh
Q psy16761 77 TSRRELAGHLLLAESWRELFILGLAQY 103 (261)
Q Consensus 77 ~~L~~~dqv~lLq~~~~e~l~L~~a~~ 103 (261)
+||.+..+|+.+|+.+..++.-++...
T Consensus 236 ~gL~~~~~Ve~lqe~~~~aL~~y~~~~ 262 (316)
T 1nrl_A 236 PGVLQHRVVDQLQEQFAITLKSYIECN 262 (316)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998666543
No 90
>1pdu_A DHR38, nuclear hormone receptor HR38; nuclear receptor, ligand-binding domain, hormone/growth factor receptor complex; 2.30A {Drosophila melanogaster} SCOP: a.123.1.1
Probab=99.38 E-value=6.9e-13 Score=114.33 Aligned_cols=99 Identities=20% Similarity=0.097 Sum_probs=84.4
Q ss_pred hhhhhccHHHHHHHHHhhcCCCCCccccccccc--c---ccchHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhhcccc
Q psy16761 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKS--R---HVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTAF 76 (261)
Q Consensus 2 ~LL~~~w~ell~l~~a~rs~~~~~~~l~~~~~~--~---~~~~~~~~~~~~~~~~~~~~l~ld~~E~~~Lkaivlf~p~f 76 (261)
+|||++|.|+++++.|||+.+.++..++.++.. + ..+..+.++.+++++.+|+++++|.+||+|||||++|+ +.
T Consensus 83 ~LLk~~~~el~lL~~a~rs~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAIvLfn-d~ 161 (244)
T 1pdu_A 83 LLFQSASLELFVLRLAYRARIDDTKLIFCNGTVLHRTQCLRSFGEWLNDIMEFSRSLHNLEIDISAFACLCALTLIT-ER 161 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSSCSEEECTTSBEEEHHHHHHHHTTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHSS-CC
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCceEeeCCeeecHHHHHhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CC
Confidence 699999999999999999988777777776631 1 11334567788899999999999999999999999997 78
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHh
Q psy16761 77 TSRRELAGHLLLAESWRELFILGLA 101 (261)
Q Consensus 77 ~~L~~~dqv~lLq~~~~e~l~L~~a 101 (261)
+||++..+|+.+|+.+..++.-++.
T Consensus 162 ~gL~~~~~ve~lq~~~~~aL~~y~~ 186 (244)
T 1pdu_A 162 HGLREPKKVEQLQMKIIGSLRDHVT 186 (244)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999886554
No 91
>3ipq_A Oxysterols receptor LXR-alpha; LXR homodimer, LXR signaling, alternative DNA-binding, metal-binding, nucleus, polymorphism, receptor transcription; HET: 965; 2.00A {Homo sapiens} PDB: 3ips_A* 3ipu_A* 3fc6_B* 3fal_B* 1uhl_B* 2acl_B* 1upv_A* 1upw_A* 1p8d_A* 1pq9_A* 1pq6_A* 1pqc_A* 3kfc_A* 4dk7_A* 4dk8_A* 3l0e_A*
Probab=99.38 E-value=9.8e-13 Score=115.71 Aligned_cols=102 Identities=15% Similarity=0.089 Sum_probs=86.4
Q ss_pred hhhhhccHHHHHHHHHhhcCCCCCccccccccc--c----ccch-HHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhhcc
Q psy16761 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKS--R----HVDI-EEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKT 74 (261)
Q Consensus 2 ~LL~~~w~ell~l~~a~rs~~~~~~~l~~~~~~--~----~~~~-~~~~~~~~~~~~~~~~l~ld~~E~~~Lkaivlf~p 74 (261)
+|||++|.|+++|+.|+++.+..+...+.++.. + ..+. .+.++.+.+++.+|+++++|.+||+|||||++|+|
T Consensus 124 ~LLk~~~~el~lL~~a~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAIvL~np 203 (283)
T 3ipq_A 124 ALLKTSAIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLNDAEFALLIAISIFSA 203 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTEETTTTEEEETTTEEECHHHHHHTTCCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCceecHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Confidence 699999999999999999988777777766521 1 1122 35677888999999999999999999999999999
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHhhh
Q psy16761 75 AFTSRRELAGHLLLAESWRELFILGLAQY 103 (261)
Q Consensus 75 ~f~~L~~~dqv~lLq~~~~e~l~L~~a~~ 103 (261)
+.+||++..+|+.+|+.+..++.-++...
T Consensus 204 d~~gL~~~~~ve~lq~~~~~aL~~y~~~~ 232 (283)
T 3ipq_A 204 DRPNVQDQLQVERLQHTYVEALHAYVSIH 232 (283)
T ss_dssp TSTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999988666543
No 92
>3up3_A Acedaf-12; ligand binding domain, nematode, steroid binding protein- transcription complex; HET: XCA; 1.25A {Ancylostoma ceylanicum} PDB: 3up0_A*
Probab=99.38 E-value=1.8e-12 Score=111.67 Aligned_cols=99 Identities=16% Similarity=0.138 Sum_probs=81.5
Q ss_pred hhhhhccHHHHHHHHHhhcCCCCCcc---cccccc----c--c--ccchHH-HHHHHHHHHHHhhc-CCCChHHHHHHHH
Q psy16761 2 LLLAESWRELFILGLAQYLPSLDLGE---LVESCK----S--R--HVDIEE-EVIRFQSVLNEFKV-LNIDPYEYDYIRA 68 (261)
Q Consensus 2 ~LL~~~w~ell~l~~a~rs~~~~~~~---l~~~~~----~--~--~~~~~~-~~~~~~~~~~~~~~-l~ld~~E~~~Lka 68 (261)
+|||+||.|+++++.|+|+.+..++. .++++. + . ..++.+ .++.+.+++.+|++ +++|.+||+||||
T Consensus 77 ~LLk~~w~Ell~L~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~L~ld~~E~alLkA 156 (243)
T 3up3_A 77 ALLKGGMIEMLTVRGVRRFDSSSGSWTTPTLGESSEVSINMFDQLNADVRSEQKMRFLQFFKIFHEDIRSNDLVISMIML 156 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHEETTTTEECCTTSCTTCCEEGGGGGGSCTTTHHHHHHHHHHHHHTSCHHHHTCHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHhcccCCeeeecccCCCccccHHHHhhhcccccHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 69999999999999999998877763 233321 1 1 134444 57889999999997 9999999999999
Q ss_pred HHhhccccccccch---hHHHHHHHHHHHHHHHHHh
Q psy16761 69 ITLFKTAFTSRREL---AGHLLLAESWRELFILGLA 101 (261)
Q Consensus 69 ivlf~p~f~~L~~~---dqv~lLq~~~~e~l~L~~a 101 (261)
|++|+|+ +||.+. .+|+.+|+.+..++.-++.
T Consensus 157 ivLfsp~-~gL~~~~~~~~Ve~lQe~~~~aL~~y~~ 191 (243)
T 3up3_A 157 IVLFSPR-DSITDPEDRRIIARHHEQFSALLNRYLE 191 (243)
T ss_dssp HHHSCCC-TTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCCC-CCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 999865 7999999999999886654
No 93
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens}
Probab=99.38 E-value=1.8e-12 Score=117.32 Aligned_cols=101 Identities=14% Similarity=0.159 Sum_probs=78.3
Q ss_pred hhhhhccHHHHHHHHHhhcCCC--CCccccccccc--c-----ccc--hHHHHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q psy16761 2 LLLAESWRELFILGLAQYLPSL--DLGELVESCKS--R-----HVD--IEEEVIRFQSVLNEFKVLNIDPYEYDYIRAIT 70 (261)
Q Consensus 2 ~LL~~~w~ell~l~~a~rs~~~--~~~~l~~~~~~--~-----~~~--~~~~~~~~~~~~~~~~~l~ld~~E~~~Lkaiv 70 (261)
.|||++|.|+++|+.|+|+... ++..++.++.. . ..+ +.+.++.+++++.+|+++++|.+||+|||||+
T Consensus 187 ~LLk~~w~ElllL~~a~rs~~~~~~~~ll~~~G~~i~~~~~~~~~g~~~~~l~~~l~~l~~~l~~L~ld~~EyalLkAIv 266 (352)
T 3tx7_B 187 KLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLV 266 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCSSCCBCTTCCBCCHHHHHHTSCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCCcccHHHHHHhccccHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6999999999999999998654 35566665521 0 112 25667889999999999999999999999999
Q ss_pred hhccccccccchhHHHHHHHHHHHHHHHHHhh
Q psy16761 71 LFKTAFTSRRELAGHLLLAESWRELFILGLAQ 102 (261)
Q Consensus 71 lf~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~ 102 (261)
+|+|+.+||++..+|+.+|+.+..++.-++..
T Consensus 267 Lfnpd~~gLs~~~~Ve~lQe~~~~aL~~y~~~ 298 (352)
T 3tx7_B 267 LFSLDVKNLENFQLVEGVQEQVNAALLDYTMC 298 (352)
T ss_dssp HSCSCC------CHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998865543
No 94
>3vhv_A Mineralocorticoid receptor; nuclear receptor, transcription factor, activating mutation, hypertension, non-steroidal antagonist; HET: LD1 LD2; 1.35A {Homo sapiens} SCOP: a.123.1.1 PDB: 2aax_A* 2aa6_A* 2ab2_A* 2aa2_A* 2aa5_A* 2aa7_A* 2a3i_A* 1y9r_A* 1ya3_A* 2oax_A* 2abi_A* 2q1h_A* 2q1v_A* 2q3y_A* 3ry9_A* 4fne_A* 4fn9_A*
Probab=99.37 E-value=3.6e-13 Score=117.16 Aligned_cols=100 Identities=13% Similarity=0.087 Sum_probs=83.7
Q ss_pred hhhhhccHHHHHHHHHhhcCCCCC--ccccccccc------cccchHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhhc
Q psy16761 2 LLLAESWRELFILGLAQYLPSLDL--GELVESCKS------RHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFK 73 (261)
Q Consensus 2 ~LL~~~w~ell~l~~a~rs~~~~~--~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~ld~~E~~~Lkaivlf~ 73 (261)
+|||++|.|+++++.|||+.+... ..++.++.. +..+..+.++.+++++.+|+++++|.+||+|||||++|+
T Consensus 76 ~LLk~~~~el~~L~~a~rs~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAIvLfn 155 (260)
T 3vhv_A 76 TLIQYSWMSLLSFALSWRSYKHTNSQFLYFAPDLVFNEEKMHQSAMYELCQGMHQISLQFVRLQLTFEEYTIMKVLLLLS 155 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSEEEETTEEECHHHHHHTTCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTS
T ss_pred HHHHHhHHHHHHHHHHHHhhccCCCCeEEecCCccccHHHhhcccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcC
Confidence 699999999999999999876543 345555421 112445667889999999999999999999999999999
Q ss_pred c-ccccccchhHHHHHHHHHHHHHHHHHh
Q psy16761 74 T-AFTSRRELAGHLLLAESWRELFILGLA 101 (261)
Q Consensus 74 p-~f~~L~~~dqv~lLq~~~~e~l~L~~a 101 (261)
| +.+||++..+++.+|+.+..++.-++.
T Consensus 156 p~d~~gL~~~~~ve~lqe~~~~aL~~y~~ 184 (260)
T 3vhv_A 156 TIPKDGLKSQAAFEEMRTNYIKELRKMVT 184 (260)
T ss_dssp EEETTCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 9 999999999999999999999875554
No 95
>3mnp_A Glucocorticoid receptor; protein-ligand complex, steroid nuclear receptor, mouse GR, hormone receptor; HET: DEX; 1.50A {Mus musculus} SCOP: a.123.1.1 PDB: 3mno_A* 3mne_A* 1m2z_A* 3k22_A* 3cld_A* 3k23_A* 3e7c_A* 1nhz_A* 1p93_A* 3bqd_A* 3h52_A* 3gn8_A* 4e2j_A*
Probab=99.37 E-value=5e-13 Score=116.29 Aligned_cols=100 Identities=13% Similarity=0.088 Sum_probs=83.7
Q ss_pred hhhhhccHHHHHHHHHhhcCCCCCc--ccccccc----c--cccchHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhhc
Q psy16761 2 LLLAESWRELFILGLAQYLPSLDLG--ELVESCK----S--RHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFK 73 (261)
Q Consensus 2 ~LL~~~w~ell~l~~a~rs~~~~~~--~l~~~~~----~--~~~~~~~~~~~~~~~~~~~~~l~ld~~E~~~Lkaivlf~ 73 (261)
+|||++|.|+++++.|||+.+.... ..+.++. . ...+..+.++.+++++.+|+++++|.+||+|||||++|+
T Consensus 78 ~LLk~~~~el~iL~~a~rs~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAIvL~n 157 (261)
T 3mnp_A 78 TLLQYSWMFLMVFALGWRSYRQASGNLLCFAPDLIINEQRMTLPCMYDQCKHMLFISTELQRLQVSYEEYLCMKTLLLLS 157 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSEEEETTEEECHHHHTSTTTHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHcccCCCCCEEEecCCcccchhhhhhhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC
Confidence 6999999999999999998765443 3444441 1 123455667888899999999999999999999999999
Q ss_pred c-ccccccchhHHHHHHHHHHHHHHHHHh
Q psy16761 74 T-AFTSRRELAGHLLLAESWRELFILGLA 101 (261)
Q Consensus 74 p-~f~~L~~~dqv~lLq~~~~e~l~L~~a 101 (261)
| +.+||++..+++.+|+.+..++.-++.
T Consensus 158 p~d~~gL~~~~~ve~lq~~~~~aL~~y~~ 186 (261)
T 3mnp_A 158 SVPKEGLKSQELFDEIRMTYIKELGKAIA 186 (261)
T ss_dssp EEETTCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 9 999999999999999999999886554
No 96
>1ovl_A Orphan nuclear receptor NURR1 (MSe 414, 496, 511); NUUR1, LBD, transcription; 2.20A {Homo sapiens} SCOP: a.123.1.1
Probab=99.37 E-value=1.4e-12 Score=113.84 Aligned_cols=100 Identities=17% Similarity=0.131 Sum_probs=85.4
Q ss_pred hhhhhccHHHHHHHHHhhcCCCCCccccccccc--c---ccchHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhhcccc
Q psy16761 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKS--R---HVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTAF 76 (261)
Q Consensus 2 ~LL~~~w~ell~l~~a~rs~~~~~~~l~~~~~~--~---~~~~~~~~~~~~~~~~~~~~l~ld~~E~~~Lkaivlf~p~f 76 (261)
+|||++|.|+++++.|||+.+.++..++.++.. + ..+..+.++.+.+++.+|+++++|.+||+|||||++|+| .
T Consensus 110 ~LLk~~~~el~~L~~a~~s~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~~~-~ 188 (271)
T 1ovl_A 110 LLFESAFLELFVLRLAYRSNPVEGKLIFCNGVVLHRLQCVRGFGEWIDSIVEFSSNLQNMNIDISAFSCIAALAMVTE-R 188 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHSBTTTTEEECTTSBEEEHHHHTTTTTTHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHSSC-C
T ss_pred HHHHHhHHHHHHHHHHHHhcCCCCeEEeeCCeeecHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-C
Confidence 699999999999999999999888777766531 1 123445677888999999999999999999999999996 7
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHhh
Q psy16761 77 TSRRELAGHLLLAESWRELFILGLAQ 102 (261)
Q Consensus 77 ~~L~~~dqv~lLq~~~~e~l~L~~a~ 102 (261)
+||++..+++.+|+.+..++.-++..
T Consensus 189 ~gL~~~~~v~~lq~~~~~aL~~y~~~ 214 (271)
T 1ovl_A 189 HGLKEPKRVEELQNKIVNCLKDHVTF 214 (271)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHHHHG
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999998866553
No 97
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=99.36 E-value=1.9e-12 Score=119.92 Aligned_cols=100 Identities=13% Similarity=0.081 Sum_probs=82.9
Q ss_pred hhhhhccHHHHHHHHHhhcCCCCCccccccccc---------cccchHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhh
Q psy16761 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKS---------RHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLF 72 (261)
Q Consensus 2 ~LL~~~w~ell~l~~a~rs~~~~~~~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~l~ld~~E~~~Lkaivlf 72 (261)
+|||++|.|+++|++|++..+ +..++.++.. ...+..+.++.+++++.+|+++++|.+||+|||||+||
T Consensus 258 ~LLk~~w~Ell~L~~a~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~f~~~l~~L~ld~~E~alLkAivLf 335 (419)
T 3dzy_D 258 TLLKYGVHEIIYTMLASLMNK--DGVLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIIL 335 (419)
T ss_dssp HHHHHHHHHHHHHHHGGGBCS--SEEEEGGGTEEEEHHHHHSSSGGGSGGGHHHHHHHHHHHHTCCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHhcC--CCceeecCcccccHHHHHhhhhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 799999999999999977654 4455544421 11234566778899999999999999999999999999
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhh
Q psy16761 73 KTAFTSRRELAGHLLLAESWRELFILGLAQY 103 (261)
Q Consensus 73 ~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~ 103 (261)
+||.+||.+..+|+.+|+.+..+|.-++...
T Consensus 336 ~pD~~gL~~~~~Ve~lQe~~~~aL~~yi~~~ 366 (419)
T 3dzy_D 336 SGDRPGLLNVKPIEDIQDNLLQALELQLKLN 366 (419)
T ss_dssp CTTSTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998666543
No 98
>1t7r_A Androgen receptor; nuclear receptor, transcription factor, ligand binding domain, AF-2, androgen, testosterone, DHT, alpha-helical sandwich; HET: DHT; 1.40A {Pan troglodytes} SCOP: a.123.1.1 PDB: 1t73_A* 1t76_A* 1t74_A* 1t79_A* 1t7m_A* 1t7f_A* 1t7t_A* 2am9_A* 2ama_A* 2amb_A* 2pnu_A* 1e3g_A* 2q7i_A* 1xj7_A* 2q7j_A* 3g0w_A* 2ihq_A* 2nw4_A* 1i37_A* 2q7k_A* ...
Probab=99.35 E-value=7.7e-13 Score=115.55 Aligned_cols=100 Identities=15% Similarity=0.169 Sum_probs=81.6
Q ss_pred hhhhhccHHHHHHHHHhhcCCCCCc--ccccccc--c----cccchHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhhc
Q psy16761 2 LLLAESWRELFILGLAQYLPSLDLG--ELVESCK--S----RHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFK 73 (261)
Q Consensus 2 ~LL~~~w~ell~l~~a~rs~~~~~~--~l~~~~~--~----~~~~~~~~~~~~~~~~~~~~~l~ld~~E~~~Lkaivlf~ 73 (261)
.|||++|.|+++++.|||+.+..+. .++.++. . ...+..+.++.+++++.+|+++++|.+||+|||||++|+
T Consensus 85 ~LLk~~w~el~iL~~a~rs~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~l~~L~ld~~E~~lLkAIvLfn 164 (269)
T 1t7r_A 85 AVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALLLFS 164 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSEEEETTEEECHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTS
T ss_pred HHHHHhHHHHHHHHHHHHhcccCCCCeEEeCCCceecHHhhhhhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC
Confidence 6999999999999999998765332 3344431 1 112334566788999999999999999999999999999
Q ss_pred c-ccccccchhHHHHHHHHHHHHHHHHHh
Q psy16761 74 T-AFTSRRELAGHLLLAESWRELFILGLA 101 (261)
Q Consensus 74 p-~f~~L~~~dqv~lLq~~~~e~l~L~~a 101 (261)
| +.++|++..+++.+|+.+..++.-++.
T Consensus 165 p~~~~gL~~~~~ve~lq~~~~~aL~~y~~ 193 (269)
T 1t7r_A 165 IIPVDGLKNQKFFDELRMNYIKELDRIIA 193 (269)
T ss_dssp EEETTCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 9 899999999999999999999875554
No 99
>2hc4_A Vitamin D receptor; alpha helical sandwich, gene regulation; HET: VDX; 2.20A {Danio rerio} PDB: 2hbh_A* 2hcd_A* 3dr1_A* 3o1d_A* 3o1e_A*
Probab=99.35 E-value=2.7e-12 Score=113.96 Aligned_cols=101 Identities=15% Similarity=0.029 Sum_probs=83.3
Q ss_pred hhhhhccHHHHHHHHHhhcCCCCCcccccc-cc--cc----ccch-HHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhhc
Q psy16761 2 LLLAESWRELFILGLAQYLPSLDLGELVES-CK--SR----HVDI-EEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFK 73 (261)
Q Consensus 2 ~LL~~~w~ell~l~~a~rs~~~~~~~l~~~-~~--~~----~~~~-~~~~~~~~~~~~~~~~l~ld~~E~~~Lkaivlf~ 73 (261)
+|||++|.|+++++.|+++.+.++..++.+ +. .. ..+. .+.++.+++++.+|+++++|.+||+|||||++|+
T Consensus 138 ~LLk~~w~el~lL~~a~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~l~~L~ld~~E~alLkAIvLfn 217 (302)
T 2hc4_A 138 ALLKSSAIEIIMLRSNQSFSLEDMSWSCGGPDFKYCINDVTKAGHTLELLEPLVKFQVGLKKLKLHEEEHVLLMAICLLS 217 (302)
T ss_dssp HHHHHHHHHHHHHHGGGTEETTTTEEECSSSTTEECHHHHHTTTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCeEEecCCCeeecHHHHHHccCcHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Confidence 699999999999999988766555555543 21 11 1122 4667888999999999999999999999999999
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHhh
Q psy16761 74 TAFTSRRELAGHLLLAESWRELFILGLAQ 102 (261)
Q Consensus 74 p~f~~L~~~dqv~lLq~~~~e~l~L~~a~ 102 (261)
|+.+||.+..+|+.+|+.+..++.-++..
T Consensus 218 pd~~gL~~~~~Ve~lqe~~~~aL~~y~~~ 246 (302)
T 2hc4_A 218 PDRPGVQDHVRIEALQDRLCDVLQAYIRI 246 (302)
T ss_dssp SCSTTCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998866553
No 100
>1lbd_A RXR_LBD, retinoid X receptor; transcription factor, nuclear receptor, structural proteomic europe, spine, structural genomics; 2.70A {Homo sapiens} SCOP: a.123.1.1 PDB: 1z5x_U* 2q60_A
Probab=99.35 E-value=2.8e-12 Score=112.56 Aligned_cols=100 Identities=18% Similarity=0.223 Sum_probs=83.4
Q ss_pred hhhhhccHHHHHHHHHhhcCCCCCccccccccc------cccchHHHH-HHHHHHHHHhhcCCCChHHHHHHHHHHhhcc
Q psy16761 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKS------RHVDIEEEV-IRFQSVLNEFKVLNIDPYEYDYIRAITLFKT 74 (261)
Q Consensus 2 ~LL~~~w~ell~l~~a~rs~~~~~~~l~~~~~~------~~~~~~~~~-~~~~~~~~~~~~l~ld~~E~~~Lkaivlf~p 74 (261)
+|||++|.|+++++.|||+.+.++..++.++.. ...+..... +.+.+++.+|+++++|.+||+|||||++|+|
T Consensus 119 ~LLk~~~~el~il~~a~rs~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ld~~E~~lLkaivL~~p 198 (282)
T 1lbd_A 119 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNP 198 (282)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGSSSEEECTTSCEEEHHHHHHTTTHHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCceEecCCcccccchhhhcccHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHcCC
Confidence 689999999999999999998888777766521 111233333 4567899999999999999999999999999
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHh
Q psy16761 75 AFTSRRELAGHLLLAESWRELFILGLA 101 (261)
Q Consensus 75 ~f~~L~~~dqv~lLq~~~~e~l~L~~a 101 (261)
+.++|++..+++.+|+.+..++.-++.
T Consensus 199 d~~gLs~~~~v~~lq~~~~~~L~~y~~ 225 (282)
T 1lbd_A 199 DSKGLSNPAEVEALREKVYASLEAYCK 225 (282)
T ss_dssp TCTTCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998765544
No 101
>2p1t_A Retinoic acid receptor RXR-alpha; protein-ligand complex, hormone receptor; HET: 3TN; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 1mvc_A* 1mzn_A* 1mv9_A* 2p1u_A* 2p1v_A* 2zxz_A* 2zy0_A* 3fug_A* 3nsp_A 3nsq_A* 3r29_A 3r2a_A* 3r5m_A* 3e94_A* 3kwy_A* 1fby_A* 3uvv_B* 3fc6_A* 1rdt_A* 3fal_A* ...
Probab=99.34 E-value=4.7e-12 Score=108.46 Aligned_cols=100 Identities=18% Similarity=0.223 Sum_probs=83.1
Q ss_pred hhhhhccHHHHHHHHHhhcCCCCCccccccccc------cccchHHHH-HHHHHHHHHhhcCCCChHHHHHHHHHHhhcc
Q psy16761 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKS------RHVDIEEEV-IRFQSVLNEFKVLNIDPYEYDYIRAITLFKT 74 (261)
Q Consensus 2 ~LL~~~w~ell~l~~a~rs~~~~~~~l~~~~~~------~~~~~~~~~-~~~~~~~~~~~~l~ld~~E~~~Lkaivlf~p 74 (261)
.|||++|.|+++++.|+|+.+.++..++.++.. ...+..... +.+.+++.+|+++++|.+||+|||||++|+|
T Consensus 77 ~LLk~~w~e~~il~~a~rs~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ld~~E~~~Lkai~l~~p 156 (240)
T 2p1t_A 77 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNP 156 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSSSEEECTTSCEEEHHHHHTTTCHHHHHHHHHHTHHHHHHTTCCHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCceEecCCcccccchhhhhchHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC
Confidence 689999999999999999998888777766521 112233333 4567899999999999999999999999999
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHh
Q psy16761 75 AFTSRRELAGHLLLAESWRELFILGLA 101 (261)
Q Consensus 75 ~f~~L~~~dqv~lLq~~~~e~l~L~~a 101 (261)
+.+||++..+++.+|+.+...+.-++.
T Consensus 157 d~~gl~~~~~ve~~q~~~~~~L~~y~~ 183 (240)
T 2p1t_A 157 DSKGLSNPAEVEALREKVYASLEAYCK 183 (240)
T ss_dssp TCTTCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998765444
No 102
>3vhu_A Mineralocorticoid receptor; nuclear receptor, transcription factor, activating mutation, hypertension, antagonist, spironolactone; HET: SNL; 2.11A {Homo sapiens}
Probab=99.33 E-value=9.1e-13 Score=116.60 Aligned_cols=100 Identities=13% Similarity=0.087 Sum_probs=83.4
Q ss_pred hhhhhccHHHHHHHHHhhcCCCCC--ccccccccc------cccchHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhhc
Q psy16761 2 LLLAESWRELFILGLAQYLPSLDL--GELVESCKS------RHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFK 73 (261)
Q Consensus 2 ~LL~~~w~ell~l~~a~rs~~~~~--~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~ld~~E~~~Lkaivlf~ 73 (261)
+|||++|.|+++|+.|||+.+... ..++.++.. +..+..+.++.+++++.+|+++++|.+||+|||||++|+
T Consensus 110 ~LLk~~~~el~lL~~a~rS~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld~~EyalLkAIvLfn 189 (294)
T 3vhu_A 110 TLIQYSWMSLLSFALSWRSYKHTNSQFLYFAPDLVFNEEKMHQSAMYELCQGMHQISLQFVRLQLTFEEYTIMKVLLLLS 189 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSEEEETTEEECHHHHHHTTCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTS
T ss_pred HHHHHhHHHHHHHHHHHHhhhcCCCCeEEeCCCccccHHHhhcccHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 699999999999999999876533 345555421 122445667889999999999999999999999999999
Q ss_pred c-ccccccchhHHHHHHHHHHHHHHHHHh
Q psy16761 74 T-AFTSRRELAGHLLLAESWRELFILGLA 101 (261)
Q Consensus 74 p-~f~~L~~~dqv~lLq~~~~e~l~L~~a 101 (261)
| +.+||++..+++.+|+.+..++.-++.
T Consensus 190 p~d~~gL~~~~~Ve~lQe~~~~aL~~y~~ 218 (294)
T 3vhu_A 190 TIPKDGLKSQAAFEEMRTNYIKELRKMVT 218 (294)
T ss_dssp EEETTCCTTHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 9 999999999999999999999875544
No 103
>1hg4_A Ultraspiracle; nuclear hormone receptor, transcription factor, ligand binding; HET: LPP; 2.4A {Drosophila melanogaster} SCOP: a.123.1.1
Probab=99.32 E-value=3.8e-12 Score=111.57 Aligned_cols=101 Identities=19% Similarity=0.157 Sum_probs=79.1
Q ss_pred hhhhhccHHHHHHHHHhhcCCCCCc---------------------------cccccccc--c----ccchHHH-HHHHH
Q psy16761 2 LLLAESWRELFILGLAQYLPSLDLG---------------------------ELVESCKS--R----HVDIEEE-VIRFQ 47 (261)
Q Consensus 2 ~LL~~~w~ell~l~~a~rs~~~~~~---------------------------~l~~~~~~--~----~~~~~~~-~~~~~ 47 (261)
.|||++|.|+++++.|||+.+..+. ..++.+.. + ..++... .+.++
T Consensus 83 ~LLk~~~~el~~L~~a~rs~~~~~~~~~~~~~~~~~~dGs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (279)
T 1hg4_A 83 ILLKAAWIELLIANVAWCSIVSLDDGGAGGGGGGLGHDGSFERRSPGLQPQQLFLNQSFSYHRNSAIKAGVSAIFDRILS 162 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTC-------------------------CCCEEESSSSCEEEHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhccCcccccccccccccCccccccccccccceeeecCCcccchhhHhhcchHHHHHHHHH
Confidence 6999999999999999999876543 22222210 0 1122223 34567
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHhh
Q psy16761 48 SVLNEFKVLNIDPYEYDYIRAITLFKTAFTSRRELAGHLLLAESWRELFILGLAQ 102 (261)
Q Consensus 48 ~~~~~~~~l~ld~~E~~~Lkaivlf~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~ 102 (261)
+++.+|+++++|.+||+|||||++|+|+.+||++..+++.+|+.+..++.-++..
T Consensus 163 ~~~~~~~~L~ld~~E~~lLkAivL~npd~~gL~~~~~v~~lq~~~~~aL~~y~~~ 217 (279)
T 1hg4_A 163 ELSVKMKRLNLDRRELSCLKAIILYNPDIRGIKSRAEIEMCREKVYACLDEHCRL 217 (279)
T ss_dssp HTHHHHHHHTCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999998866553
No 104
>3u9q_A Peroxisome proliferator-activated receptor gamma; nuclear receptor, adipogenesis, RXRA, nucleus, transcription; HET: DKA; 1.52A {Homo sapiens} SCOP: a.123.1.1 PDB: 1i7i_A* 3ty0_A* 1zeo_A* 2p4y_A* 3et3_A* 3et0_A* 2hwq_A* 2ath_A* 2f4b_A* 2g0g_A* 2g0h_A* 2gtk_A* 2fvj_A* 2hwr_A* 2prg_A* 2q8s_A* 3fej_A* 3g9e_A* 3gbk_A* 3ia6_A* ...
Probab=99.32 E-value=2.9e-12 Score=111.97 Aligned_cols=100 Identities=14% Similarity=0.104 Sum_probs=82.0
Q ss_pred hhhhhccHHHHHHHHHhhcCCCCCccccccccc---c------ccchHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhh
Q psy16761 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKS---R------HVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLF 72 (261)
Q Consensus 2 ~LL~~~w~ell~l~~a~rs~~~~~~~l~~~~~~---~------~~~~~~~~~~~~~~~~~~~~l~ld~~E~~~Lkaivlf 72 (261)
+|||++|.|+++++.|++..+ +..++.++.. + ..+..+.++.+.+++.+|+++++|.+||+|||||++|
T Consensus 109 ~LLk~~~~el~lL~~a~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld~~E~alLkAIvLf 186 (269)
T 3u9q_A 109 TLLKYGVHEIIYTMLASLMNK--DGVLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIIL 186 (269)
T ss_dssp HHHHHHHHHHHHHHHHHTEET--TEEEETTTTEEEEHHHHHHSCTTGGGSSHHHHHHHHHHHTTCCCHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHhcCC--CCeEEeCCCccccHHHHHHhhhhHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 699999999999999988754 4455554421 1 1233445677889999999999999999999999999
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhh
Q psy16761 73 KTAFTSRRELAGHLLLAESWRELFILGLAQY 103 (261)
Q Consensus 73 ~p~f~~L~~~dqv~lLq~~~~e~l~L~~a~~ 103 (261)
+|+.+||.+..+|+.+|+.+..++.-++...
T Consensus 187 npd~~gL~~~~~Ve~lqe~~~~aL~~y~~~~ 217 (269)
T 3u9q_A 187 SGDRPGLLNVKPIEDIQDNLLQALELQLKLN 217 (269)
T ss_dssp CTTSTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998665543
No 105
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=99.27 E-value=1.4e-11 Score=115.49 Aligned_cols=100 Identities=19% Similarity=0.237 Sum_probs=84.0
Q ss_pred hhhhhccHHHHHHHHHhhcCCCCCccccccccc--c----ccchHHHH-HHHHHHHHHhhcCCCChHHHHHHHHHHhhcc
Q psy16761 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKS--R----HVDIEEEV-IRFQSVLNEFKVLNIDPYEYDYIRAITLFKT 74 (261)
Q Consensus 2 ~LL~~~w~ell~l~~a~rs~~~~~~~l~~~~~~--~----~~~~~~~~-~~~~~~~~~~~~l~ld~~E~~~Lkaivlf~p 74 (261)
.|||++|.|+++++.|+|+.+..+..++.++.. + ..++.... +.+.+++.+|+++++|.+||+||+||++|+|
T Consensus 304 ~LLK~~w~elliL~~a~rs~~~~~~~ll~~g~~i~~~~~~~~~~~~~~~~il~~lv~~l~~L~ld~~E~~lLkAIvLfnp 383 (467)
T 3dzy_A 304 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNP 383 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSSTTBCCCSSSCCCBTHHHHTTTCHHHHHHHHHHTHHHHHHHTCCHHHHHHHHHHHHSCT
T ss_pred HHHHhHHHHHHHHHHHHHhccCCCceEecCCceechhhhhhhcchHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCc
Confidence 699999999999999999998888887776521 1 12233333 4566999999999999999999999999999
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHh
Q psy16761 75 AFTSRRELAGHLLLAESWRELFILGLA 101 (261)
Q Consensus 75 ~f~~L~~~dqv~lLq~~~~e~l~L~~a 101 (261)
+.++|.+..+++.+|+.+..+|.-++.
T Consensus 384 d~~gL~~~~~Ve~lQe~~~~aL~~Y~~ 410 (467)
T 3dzy_A 384 DSKGLSNPAEVEALREKVYASLEAYCK 410 (467)
T ss_dssp TSTTCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998775554
No 106
>1pzl_A Hepatocyte nuclear factor 4-alpha; transcription; HET: MYR; 2.10A {Homo sapiens} SCOP: a.123.1.1 PDB: 3fs1_A* 1m7w_A* 1lv2_A*
Probab=99.23 E-value=1e-10 Score=99.64 Aligned_cols=100 Identities=17% Similarity=0.143 Sum_probs=82.7
Q ss_pred hhhhhccHHHHHHHHHhhcCCCCCccccccccc------cccchHHHH-HHHHHHHHHhhcCCCChHHHHHHHHHHhhcc
Q psy16761 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKS------RHVDIEEEV-IRFQSVLNEFKVLNIDPYEYDYIRAITLFKT 74 (261)
Q Consensus 2 ~LL~~~w~ell~l~~a~rs~~~~~~~l~~~~~~------~~~~~~~~~-~~~~~~~~~~~~l~ld~~E~~~Lkaivlf~p 74 (261)
.|||++|.|+++|+.|+|+.+.++..++.++.. ...+..... +.+.+++.+|+++++|.+||+||||+++|+|
T Consensus 77 ~LLk~~~~~~~~L~~a~~s~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~ld~~E~~~L~ai~l~~~ 156 (237)
T 1pzl_A 77 ALLRAHAGEHLLLGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYLKAIIFFDP 156 (237)
T ss_dssp HHHHHSHHHHHHHHHHHHHTTSSSEEECTTSCEEESSCGGGGGGHHHHHHHHHHTHHHHHHHTCCHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCceeecCCcccCccchhhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhCC
Confidence 689999999999999999988777666665421 111333333 4567899999999999999999999999999
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHh
Q psy16761 75 AFTSRRELAGHLLLAESWRELFILGLA 101 (261)
Q Consensus 75 ~f~~L~~~dqv~lLq~~~~e~l~L~~a 101 (261)
+.+|+++..+++.+|+.+..++.-++.
T Consensus 157 ~~~~l~~~~~ve~~q~~~~~~L~~y~~ 183 (237)
T 1pzl_A 157 DAKGLSDPGKIKRLRSQVQVSLEDYIN 183 (237)
T ss_dssp TCTTCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998876554
No 107
>1osh_A BIle acid receptor; nuclear receptor, ligand binding domain, transcription; HET: FEX; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 3l1b_A* 3bej_A* 3fli_A* 3hc5_A* 3rvf_A* 3dct_A* 3dcu_A* 3ruu_A* 3rut_A* 3olf_A* 3okh_A* 3fxv_A* 3oki_A* 3omk_A* 3omm_A* 3oof_A* 3ook_A* 3hc6_A* 3p89_A* 3p88_A* ...
Probab=99.21 E-value=1e-11 Score=105.90 Aligned_cols=100 Identities=17% Similarity=0.109 Sum_probs=77.5
Q ss_pred hhhhhccHHHHHHHHHhhcCCCCCc--cccccccccccch-HHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhhcccccc
Q psy16761 2 LLLAESWRELFILGLAQYLPSLDLG--ELVESCKSRHVDI-EEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTAFTS 78 (261)
Q Consensus 2 ~LL~~~w~ell~l~~a~rs~~~~~~--~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~ld~~E~~~Lkaivlf~p~f~~ 78 (261)
+|||++|.|+++++.|+++.+.... ..+..+..+..+. .+.++.+++++.+|+++++|.+||+|||||++|+|+.+|
T Consensus 78 ~LLk~~~~e~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~L~ld~~E~~lLkaivL~~pd~~g 157 (232)
T 1osh_A 78 ALLKGSAVEAMFLRSAEIFNKKLPSGHSDLLEERIRNSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQY 157 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHTSSCCTTTHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCTTCTT
T ss_pred HHHHHhHHHHHHHHHHHHhCCccCCCCceecHHHHHHcCCcHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Confidence 6999999999999999987432110 0010000011122 245677888999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHh
Q psy16761 79 RRELAGHLLLAESWRELFILGLA 101 (261)
Q Consensus 79 L~~~dqv~lLq~~~~e~l~L~~a 101 (261)
|++..+++.+|+.+..++.-++.
T Consensus 158 L~~~~~v~~~q~~~~~aL~~y~~ 180 (232)
T 1osh_A 158 IKDREAVEKLQEPLLDVLQKLCK 180 (232)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999886654
No 108
>3gyt_A Nuclear hormone receptor of the steroid/thyroid hormone receptors superfamily; nuclear receptor, ligand binding domain, dafachronic acid, nematode, DNA-binding, metal-binding, nucleus, receptor; HET: DL4; 2.40A {Strongyloides stercoralis} PDB: 3gyu_A*
Probab=99.20 E-value=8.9e-11 Score=101.06 Aligned_cols=97 Identities=12% Similarity=0.027 Sum_probs=74.5
Q ss_pred hhhhhccHHHHHHHHHhhcCCCCCccccccccc---------c-ccc-----hHHHHHHHHHHHHHhhcCCCChHHHHHH
Q psy16761 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKS---------R-HVD-----IEEEVIRFQSVLNEFKVLNIDPYEYDYI 66 (261)
Q Consensus 2 ~LL~~~w~ell~l~~a~rs~~~~~~~l~~~~~~---------~-~~~-----~~~~~~~~~~~~~~~~~l~ld~~E~~~L 66 (261)
+|||+||.|+++++.|+|+.+..++..+.++.. . ..+ ..+.++.++++..+++. +..||+|+
T Consensus 77 ~LLK~~~~ElliLr~a~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~~l~~---~~~E~alL 153 (244)
T 3gyt_A 77 SLLKGGMIEMLTIRGVTVFNADKGVWQTPVDGHSQISFNMFDKLRPDIKDTQKKGFLHFFNLLHSDVRK---NDLAIDII 153 (244)
T ss_dssp HHHHHHHHHHHHHHHHHTEETTTTEECCTTSTTCCEEGGGGGGSCTTTHHHHHHHHHHHHHHSCHHHHT---CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCeEeecCCcccchhHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHH---hHHHHHHH
Confidence 699999999999999999877666555543310 0 001 12345566677777776 45699999
Q ss_pred HHHHhhcccccccc---chhHHHHHHHHHHHHHHHHHh
Q psy16761 67 RAITLFKTAFTSRR---ELAGHLLLAESWRELFILGLA 101 (261)
Q Consensus 67 kaivlf~p~f~~L~---~~dqv~lLq~~~~e~l~L~~a 101 (261)
+|||+|+||.+||. +..+|+.+|+.+..++.-++.
T Consensus 154 kAivLfspDr~gL~~~~d~~~Ve~lQe~~~~aL~~y~~ 191 (244)
T 3gyt_A 154 VLMVLFDSKREGLVSQQDKETVEKLHRNYESLLHRYLY 191 (244)
T ss_dssp HHHHHSCTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCCCccccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 789999999999999886654
Done!