RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16761
(261 letters)
>3p0u_A Nuclear receptor subfamily 2 group C member 2; ligand binding
domain, orphan nuclear receptor, testicular R 4,
signaling protein; 3.00A {Homo sapiens}
Length = 249
Score = 96.9 bits (241), Expect = 2e-24
Identities = 51/188 (27%), Positives = 76/188 (40%), Gaps = 36/188 (19%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD--------------IEEEVIRFQ 131
L+ W ELF LGLAQ + L ++ + + + + E + + Q
Sbjct: 70 SLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQ 129
Query: 132 SVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIA 191
N L+ID YEY Y++AI LF +HP L I
Sbjct: 130 EFCNSMAKLDIDGYEYAYLKAIVLFS-------------------PDHP--GLTSTSQIE 168
Query: 192 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 251
Q Q+ L Y+ Y R +I + LP L+ + S + EELFF +IG N +I
Sbjct: 169 KFQEAAQMELQDYVQATYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIG-NVSIDS 227
Query: 252 TIWHMYKN 259
I ++ K
Sbjct: 228 IIPYILKM 235
Score = 51.9 bits (124), Expect = 4e-08
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 14/86 (16%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD--------------IEEEVIRFQ 47
L+ W ELF LGLAQ + L ++ + + + + E + + Q
Sbjct: 70 SLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQ 129
Query: 48 SVLNEFKVLNIDPYEYDYIRAITLFK 73
N L+ID YEY Y++AI LF
Sbjct: 130 EFCNSMAKLDIDGYEYAYLKAIVLFS 155
>3cjw_A COUP transcription factor 2; COUP-TFII, nuclear receptor, ligand
binding domain, orphan receptor, three-layered helical
sandwich, DNA-binding; 1.48A {Homo sapiens}
Length = 244
Score = 95.6 bits (238), Expect = 6e-24
Identities = 54/182 (29%), Positives = 84/182 (46%), Gaps = 30/182 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELV--------ESCKSRHVDIEEEVIRFQSVLNEF 137
LL +W ELF+L AQ L + L+ R V + + FQ + +
Sbjct: 73 ALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKL 132
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
K L++D EY ++AI LF L DV + ++Q +
Sbjct: 133 KALHVDSAEYSCLKAIVLFT---------------------SDACGLSDVAHVESLQEKS 171
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 172 QCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDML 230
Query: 258 KN 259
+
Sbjct: 231 LS 232
Score = 53.2 bits (128), Expect = 1e-08
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELV--------ESCKSRHVDIEEEVIRFQSVLNEF 53
LL +W ELF+L AQ L + L+ R V + + FQ + +
Sbjct: 73 ALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKL 132
Query: 54 KVLNIDPYEYDYIRAITLFKT 74
K L++D EY ++AI LF +
Sbjct: 133 KALHVDSAEYSCLKAIVLFTS 153
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin,
armadillo repeat, nuclear receptor LIGA binding domain,
protein binding; HET: P6L; 2.76A {Homo sapiens}
Length = 352
Score = 97.0 bits (241), Expect = 1e-23
Identities = 31/185 (16%), Positives = 61/185 (32%), Gaps = 35/185 (18%)
Query: 86 LLLAESWRELFILGLAQ-YLPSLDLGELV---------ESCKSRHVDIEEEVIR-FQSVL 134
LL W EL IL + G + S+ ++ Q ++
Sbjct: 187 KLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLNNLMSHAQELV 246
Query: 135 NEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAI 193
+ + L D E+ ++ + LF + L + + +
Sbjct: 247 AKLRSLQFDQREFVCLKFLVLFS----------------------LDVKNLENFQLVEGV 284
Query: 194 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTI 253
Q L Y YP Q +F ++ L LP +++I E L+++++ G + +
Sbjct: 285 QEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNG-DVPYNNLL 343
Query: 254 WHMYK 258
M
Sbjct: 344 IEMLH 348
Score = 53.1 bits (127), Expect = 2e-08
Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 11/83 (13%)
Query: 2 LLLAESWRELFILGLAQ-YLPSLDLGELV---------ESCKSRHVDIEEEVIR-FQSVL 50
LL W EL IL + G + S+ ++ Q ++
Sbjct: 187 KLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLNNLMSHAQELV 246
Query: 51 NEFKVLNIDPYEYDYIRAITLFK 73
+ + L D E+ ++ + LF
Sbjct: 247 AKLRSLQFDQREFVCLKFLVLFS 269
>2nxx_A Ultraspiracle (USP, NR2B4); hormone receptor, APO and holo ligand
binding pocket, hormone/growth factor complex; HET: P1A;
2.75A {Tribolium castaneum}
Length = 235
Score = 92.1 bits (229), Expect = 1e-22
Identities = 43/182 (23%), Positives = 69/182 (37%), Gaps = 31/182 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDL------GELVESCKSRHVDIEEEVIR-FQSVLNEFK 138
LL W EL I + G V + V + R ++N+ K
Sbjct: 73 QLLRAGWNELLIAAFSHRSMQAQDAIVLATGLTVNKSTAHAVGVGNIYDRVLSELVNKMK 132
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
+ +D E +RAI L+ P+ ++ V + ++
Sbjct: 133 EMKMDKTELGCLRAIILYN----------------------PDVRGIKSVQEVEMLREKI 170
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
L +Y T +P++P RF K+ L LP L+SI LE LFF +IG + I + M
Sbjct: 171 YGVLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DVPIDTFLMEML 229
Query: 258 KN 259
+
Sbjct: 230 EG 231
Score = 49.7 bits (119), Expect = 2e-07
Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 7/80 (8%)
Query: 2 LLLAESWRELFILGLAQYLPSLDL------GELVESCKSRHVDIEEEVIR-FQSVLNEFK 54
LL W EL I + G V + V + R ++N+ K
Sbjct: 73 QLLRAGWNELLIAAFSHRSMQAQDAIVLATGLTVNKSTAHAVGVGNIYDRVLSELVNKMK 132
Query: 55 VLNIDPYEYDYIRAITLFKT 74
+ +D E +RAI L+
Sbjct: 133 EMKMDKTELGCLRAIILYNP 152
>1ymt_A Steroidogenic factor 1; SF-1, ligand-binding domain, ligand,
phosphatidyl glycerol, CO-repressor peptide,
transcription; HET: DR9; 1.20A {Mus musculus} PDB:
3f7d_A* 1yp0_A* 1yow_A* 1zdt_A*
Length = 246
Score = 92.2 bits (229), Expect = 1e-22
Identities = 30/185 (16%), Positives = 59/185 (31%), Gaps = 35/185 (18%)
Query: 86 LLLAESWRELFILGLAQ-----------YLPSLDLGELVESCKSRHVDIEEEVIRFQSVL 134
LL SW EL +L L + EL + V+R Q ++
Sbjct: 81 TLLQNSWSELLVLDHIYRQVQYGKEDSILLVTGQEVELSTVAVQAGSLLHSLVLRAQELV 140
Query: 135 NEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAI 193
+ L +D E+ ++ + LF + L + +
Sbjct: 141 LQLHALQLDRQEFVCLKFLILFS----------------------LDVKFLNNHSLVKDA 178
Query: 194 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTI 253
Q L Y + YP +F ++ L L ++++ E L+ +++ +
Sbjct: 179 QEKANAALLDYTLSHYPHSGDKFQQLLLSLVEVRALSMQAKEYLYHKHLGN-EMPRNNLL 237
Query: 254 WHMYK 258
M +
Sbjct: 238 IEMLQ 242
Score = 51.3 bits (123), Expect = 5e-08
Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 11/83 (13%)
Query: 2 LLLAESWRELFILGLAQ-----------YLPSLDLGELVESCKSRHVDIEEEVIRFQSVL 50
LL SW EL +L L + EL + V+R Q ++
Sbjct: 81 TLLQNSWSELLVLDHIYRQVQYGKEDSILLVTGQEVELSTVAVQAGSLLHSLVLRAQELV 140
Query: 51 NEFKVLNIDPYEYDYIRAITLFK 73
+ L +D E+ ++ + LF
Sbjct: 141 LQLHALQLDRQEFVCLKFLILFS 163
>1pzl_A Hepatocyte nuclear factor 4-alpha; transcription; HET: MYR; 2.10A
{Homo sapiens} SCOP: a.123.1.1 PDB: 3fs1_A* 1m7w_A*
1lv2_A*
Length = 237
Score = 91.3 bits (227), Expect = 2e-22
Identities = 35/166 (21%), Positives = 58/166 (34%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELV-------ESCKSRHVDIEEEVIRFQSVLNEFK 138
LL E +LG + L+ C + ++ F+
Sbjct: 77 ALLRAHAGEHLLLGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQ 136
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
L ID EY Y++AI F + L D I ++ Q
Sbjct: 137 ELQIDDNEYAYLKAIIFFD-------------------PDAKG--LSDPGKIKRLRSQVQ 175
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
+ L YI+ RF ++ L+LP L+SI ++E++ F + G
Sbjct: 176 VSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKLFG 221
Score = 50.9 bits (122), Expect = 8e-08
Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 7/79 (8%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELV-------ESCKSRHVDIEEEVIRFQSVLNEFK 54
LL E +LG + L+ C + ++ F+
Sbjct: 77 ALLRAHAGEHLLLGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQ 136
Query: 55 VLNIDPYEYDYIRAITLFK 73
L ID EY Y++AI F
Sbjct: 137 ELQIDDNEYAYLKAIIFFD 155
>3plz_A FTZ-F1 related protein; alpha helical sandwhich, family five, TRAN
factor, transcription-receptor-agonist comple; HET: 470;
1.75A {Homo sapiens} PDB: 1yok_A* 1yuc_A* 4dor_A*
1zdu_A* 4dos_A* 1zh7_A 1pk5_A 3f5c_A
Length = 257
Score = 91.4 bits (227), Expect = 3e-22
Identities = 31/184 (16%), Positives = 63/184 (34%), Gaps = 33/184 (17%)
Query: 86 LLLAESWRELFILGLAQ-YLPSLDLGELV---------ESCKSRHVD-IEEEVIRFQSVL 134
LL W EL IL + G + S+ + + Q ++
Sbjct: 92 KLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLNNLMSHAQELV 151
Query: 135 NEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQ 194
+ + L D E+ ++ + LF +++ L + + +Q
Sbjct: 152 AKLRSLQFDQREFVCLKFLVLFSLDVKN---------------------LENFQLVEGVQ 190
Query: 195 GHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIW 254
L Y YP Q +F ++ L LP +++I E L+++++ G + +
Sbjct: 191 EQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNG-DVPYNNLLI 249
Query: 255 HMYK 258
M
Sbjct: 250 EMLH 253
Score = 50.5 bits (121), Expect = 1e-07
Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 11/83 (13%)
Query: 2 LLLAESWRELFILGLAQ-YLPSLDLGELV---------ESCKSRHVD-IEEEVIRFQSVL 50
LL W EL IL + G + S+ + + Q ++
Sbjct: 92 KLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLNNLMSHAQELV 151
Query: 51 NEFKVLNIDPYEYDYIRAITLFK 73
+ + L D E+ ++ + LF
Sbjct: 152 AKLRSLQFDQREFVCLKFLVLFS 174
>2iz2_A FTZ-F1 alpha, nuclear hormone receptor FTZ-F1; nuclear protein,
phosphorylation, PAIR-RULE protein; 2.8A {Drosophila
melanogaster} PDB: 2xhs_A
Length = 243
Score = 90.6 bits (225), Expect = 5e-22
Identities = 27/181 (14%), Positives = 60/181 (33%), Gaps = 30/181 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDL--------GELVESCKSRHVDIEEEVIRFQSVLNEF 137
LL SW ++ +L + L G++ + + + F + N+
Sbjct: 82 KLLQHSWSDMLVLDHLHHRIHNGLPDETQLNNGQVFNLMSLGLLGVPQLGDYFNELQNKL 141
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ L D +Y ++ + L + + ++ +
Sbjct: 142 QDLKFDMGDYVCMKFLILLNP---------------------SVRGIVNRKTVSEGHDNV 180
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
Q L Y T YPS +F + ILP + ++ + L+ ++ G + + + M
Sbjct: 181 QAALLDYTLTCYPSVNDKFRGLVNILPEIHAMAVRGEDHLYTKHCAG-SAPTQTLLMEML 239
Query: 258 K 258
Sbjct: 240 H 240
Score = 50.5 bits (121), Expect = 1e-07
Identities = 13/81 (16%), Positives = 29/81 (35%), Gaps = 8/81 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDL--------GELVESCKSRHVDIEEEVIRFQSVLNEF 53
LL SW ++ +L + L G++ + + + F + N+
Sbjct: 82 KLLQHSWSDMLVLDHLHHRIHNGLPDETQLNNGQVFNLMSLGLLGVPQLGDYFNELQNKL 141
Query: 54 KVLNIDPYEYDYIRAITLFKT 74
+ L D +Y ++ + L
Sbjct: 142 QDLKFDMGDYVCMKFLILLNP 162
>3f5c_B Nuclear receptor subfamily 0 group B member 1; transcriptional
corepressor, regulatory complex, DNA-binding,
lipid-binding, metal-binding; 3.00A {Mus musculus}
Length = 268
Score = 87.9 bits (217), Expect = 8e-21
Identities = 44/191 (23%), Positives = 66/191 (34%), Gaps = 53/191 (27%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVE------------------------------- 114
+L+ W L +L LAQ ++ E+ E
Sbjct: 83 VLVRSCWAPLLMLELAQDHLHFEMMEIPETNTTQEMLTTRRQETEGPEPAEPQATEQPQM 142
Query: 115 -SCKSRHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSS 173
S ++ H+ V +S + LNID EY Y++ LF
Sbjct: 143 VSAEAGHLLPAAAVQAIKSFFFKCWSLNIDTKEYAYLKGTVLFN---------------- 186
Query: 174 DDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLV 233
L+ V I +Q TQ L ++I + R ++ L L+ I S V
Sbjct: 187 -----PDLPGLQCVKYIEGLQWRTQQILTEHIRMMQREYQIRSAELNSALFLLRFINSDV 241
Query: 234 LEELFFRNIIG 244
+ ELFFR IIG
Sbjct: 242 VTELFFRPIIG 252
Score = 44.0 bits (103), Expect = 2e-05
Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 32/103 (31%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVE------------------------------- 30
+L+ W L +L LAQ ++ E+ E
Sbjct: 83 VLVRSCWAPLLMLELAQDHLHFEMMEIPETNTTQEMLTTRRQETEGPEPAEPQATEQPQM 142
Query: 31 -SCKSRHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLF 72
S ++ H+ V +S + LNID EY Y++ LF
Sbjct: 143 VSAEAGHLLPAAAVQAIKSFFFKCWSLNIDTKEYAYLKGTVLF 185
>1g2n_A Ultraspiracle protein; antiparallel alpha-helical sandwich,
structural proteomics in europe, spine, structural
genomics, gene regulation; HET: EPH; 1.65A {Heliothis
virescens} SCOP: a.123.1.1 PDB: 2r40_A* 1r20_A* 1r1k_A*
3ixp_A*
Length = 264
Score = 86.8 bits (215), Expect = 1e-20
Identities = 35/199 (17%), Positives = 67/199 (33%), Gaps = 47/199 (23%)
Query: 86 LLLAESWRELFILGLAQY-LPSLDLGELVESCKSRHVDIEEEVIRF-------------- 130
LL+ SW EL + +A + L +++
Sbjct: 78 LLIKGSWNELLLFAIAWRSMEFLTEERDGVDGTGNRTTSPPQLMCLMPGMTLHRNSALQA 137
Query: 131 ----------QSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHP 180
+ + + L +D EY ++AI L ++
Sbjct: 138 GVGQIFDRVLSELSLKMRTLRVDQAEYVALKAIILLNPDVKG------------------ 179
Query: 181 ESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
L++ + ++ + L++Y S+ RF + L LP L+SI E LFF
Sbjct: 180 ---LKNRQEVEVLREKMFLCLDEYCRRSRSSEEGRFAALLLRLPALRSISLKSFEHLFFF 236
Query: 241 NIIGHNTTIKKTIWHMYKN 259
+++ +T+I I +N
Sbjct: 237 HLVA-DTSIAGYIRDALRN 254
>1lbd_A RXR_LBD, retinoid X receptor; transcription factor, nuclear
receptor, structural proteomic europe, spine, structural
genomics; 2.70A {Homo sapiens} SCOP: a.123.1.1 PDB:
1z5x_U* 2q60_A
Length = 282
Score = 84.8 bits (210), Expect = 1e-19
Identities = 46/182 (25%), Positives = 70/182 (38%), Gaps = 31/182 (17%)
Query: 86 LLLAESWRELFILGLAQ-YLPSLD-----LGELVESCKSRHVDIEEEVIR-FQSVLNEFK 138
+LL W EL I + + D G V + + R ++++ +
Sbjct: 119 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 178
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
+ +D E +RAI LF P+S L + + A++
Sbjct: 179 DMQMDKTELGCLRAIVLFN----------------------PDSKGLSNPAEVEALREKV 216
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 257
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 217 YASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEML 275
Query: 258 KN 259
+
Sbjct: 276 EA 277
Score = 46.3 bits (110), Expect = 3e-06
Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 7/80 (8%)
Query: 2 LLLAESWRELFILGLAQ-YLPSLD-----LGELVESCKSRHVDIEEEVIR-FQSVLNEFK 54
+LL W EL I + + D G V + + R ++++ +
Sbjct: 119 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 178
Query: 55 VLNIDPYEYDYIRAITLFKT 74
+ +D E +RAI LF
Sbjct: 179 DMQMDKTELGCLRAIVLFNP 198
>2p1t_A Retinoic acid receptor RXR-alpha; protein-ligand complex, hormone
receptor; HET: 3TN; 1.80A {Homo sapiens} SCOP: a.123.1.1
PDB: 1mvc_A* 1mzn_A* 1mv9_A* 2p1u_A* 2p1v_A* 2zxz_A*
2zy0_A* 3fug_A* 3nsp_A 3nsq_A* 3r29_A 3r2a_A* 3r5m_A*
3e94_A* 3kwy_A* 1fby_A* 3uvv_B* 3fc6_A* 1rdt_A* 3fal_A*
...
Length = 240
Score = 82.9 bits (205), Expect = 3e-19
Identities = 42/167 (25%), Positives = 64/167 (38%), Gaps = 30/167 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLDL------GELVESCKSRHVDIEEEVIR-FQSVLNEFK 138
+LL W EL I + ++ G V + + R ++++ +
Sbjct: 77 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 136
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESC-LRDVIAIAAIQGHT 197
+ +D E +RAI LF P+S L + + A++
Sbjct: 137 DMQMDKTELGCLRAIVLFN----------------------PDSKGLSNPAEVEALREKV 174
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 175 YASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 221
Score = 45.1 bits (107), Expect = 7e-06
Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 7/80 (8%)
Query: 2 LLLAESWRELFILGLAQYLPSLDL------GELVESCKSRHVDIEEEVIR-FQSVLNEFK 54
+LL W EL I + ++ G V + + R ++++ +
Sbjct: 77 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 136
Query: 55 VLNIDPYEYDYIRAITLFKT 74
+ +D E +RAI LF
Sbjct: 137 DMQMDKTELGCLRAIVLFNP 156
>2e2r_A Estrogen-related receptor gamma; ERR gamma, BPA, nuclear receptor,
transcription; HET: 2OH; 1.60A {Homo sapiens} SCOP:
a.123.1.1 PDB: 2zas_A* 2zbs_A 2zkc_A* 2p7g_A* 1vjb_A*
1tfc_A 2p7a_A* 2p7z_A* 2gpu_A* 1kv6_A 2gp7_A 2gpp_A*
2gpo_A* 2gpv_A* 1s9q_A* 1s9p_A* 2ewp_A*
Length = 244
Score = 82.1 bits (203), Expect = 6e-19
Identities = 30/179 (16%), Positives = 65/179 (36%), Gaps = 28/179 (15%)
Query: 86 LLLAESWRELFILGLAQ-YLPSLDL-----GELVESCKSRHVDIEEEVIRFQSVLNEFKV 139
LL +W E+ ILG+ L D +++ +S+ + + ++ ++K
Sbjct: 84 SLLQSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAILQLVKKYKS 143
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQI 199
+ ++ E+ ++AI L + + DV A+ +Q
Sbjct: 144 MKLEKEEFVTLKAIALANSDSMH---------------------IEDVEAVQKLQDVLHE 182
Query: 200 FLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 258
L Y + P R K+ + LP L+ + ++ + + G + K M +
Sbjct: 183 ALQDYEAGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEG-KVPMHKLFLEMLE 240
Score = 47.8 bits (114), Expect = 9e-07
Identities = 15/79 (18%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 2 LLLAESWRELFILGLAQ-YLPSLDL-----GELVESCKSRHVDIEEEVIRFQSVLNEFKV 55
LL +W E+ ILG+ L D +++ +S+ + + ++ ++K
Sbjct: 84 SLLQSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAILQLVKKYKS 143
Query: 56 LNIDPYEYDYIRAITLFKT 74
+ ++ E+ ++AI L +
Sbjct: 144 MKLEKEEFVTLKAIALANS 162
>1xpc_A Estrogen receptor; nuclear receptor, transcription factor,
ER-alpha, antagonist hormone-growth factor receptor
complex; HET: AIT; 1.60A {Homo sapiens} SCOP: a.123.1.1
PDB: 1sj0_A* 1xp1_A* 1xp9_A* 1xp6_A* 1yim_A* 1yin_A*
3ert_A* 1r5k_A* 3erd_A* 1l2i_A* 2iok_A* 1a52_A* 2ouz_A*
1ere_A* 1err_A* 2qxs_A* 3q95_A* 3q97_A* 2b1z_A* 1zky_A*
...
Length = 248
Score = 77.5 bits (191), Expect = 4e-17
Identities = 25/169 (14%), Positives = 56/169 (33%), Gaps = 23/169 (13%)
Query: 86 LLLAESWRELFILGLAQ-YLP---SLDLGE---LVESCKSRHVDIEEEVIRFQSVLNEFK 138
LL +W E+ ++GL + L L + + E + + F+
Sbjct: 71 HLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFR 130
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
++N+ E+ +++I L + + + S L + I +
Sbjct: 131 MMNLQGEEFVCLKSIILLNSGVYTFLSSTLKS-------------LEEKDHIHRVLDKIT 177
Query: 199 IFLNKYI---HTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L + Q R ++ LIL ++ + + +E L+
Sbjct: 178 DTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCKN 226
Score = 45.6 bits (108), Expect = 4e-06
Identities = 14/80 (17%), Positives = 32/80 (40%), Gaps = 7/80 (8%)
Query: 2 LLLAESWRELFILGLAQ-YLP---SLDLGE---LVESCKSRHVDIEEEVIRFQSVLNEFK 54
LL +W E+ ++GL + L L + + E + + F+
Sbjct: 71 HLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFR 130
Query: 55 VLNIDPYEYDYIRAITLFKT 74
++N+ E+ +++I L +
Sbjct: 131 MMNLQGEEFVCLKSIILLNS 150
>2ocf_A Estrogen receptor; estrogen receptor, LBD, monobody, estradiol,
hormone-growth complex; HET: CME EST; 2.95A {Homo
sapiens}
Length = 298
Score = 77.2 bits (190), Expect = 9e-17
Identities = 26/171 (15%), Positives = 60/171 (35%), Gaps = 27/171 (15%)
Query: 86 LLLAESWRELFILGLAQYLPSLDL-GELV--------ESCKSRHVDIEEEVIRFQSVLNE 136
LL +W E+ ++GL S++ G+L+ + + E + +
Sbjct: 80 HLLECAWLEILMIGLVWR--SMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSR 137
Query: 137 FKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGH 196
F+++N+ E+ +++I L + + + S L + I +
Sbjct: 138 FRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKS-------------LEEKDHIHRVLDK 184
Query: 197 TQIFLNKYI---HTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L + Q R ++ LIL ++ + + +E L+
Sbjct: 185 ITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCKN 235
Score = 47.1 bits (112), Expect = 2e-06
Identities = 15/82 (18%), Positives = 36/82 (43%), Gaps = 11/82 (13%)
Query: 2 LLLAESWRELFILGLAQYLPSLDL-GELV--------ESCKSRHVDIEEEVIRFQSVLNE 52
LL +W E+ ++GL S++ G+L+ + + E + +
Sbjct: 80 HLLECAWLEILMIGLVWR--SMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSR 137
Query: 53 FKVLNIDPYEYDYIRAITLFKT 74
F+++N+ E+ +++I L +
Sbjct: 138 FRMMNLQGEEFVCLKSIILLNS 159
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 78.2 bits (192), Expect = 1e-16
Identities = 41/166 (24%), Positives = 62/166 (37%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQ-YLPSLDL-----GELVESCKSRHVDIEEEVIR-FQSVLNEFK 138
+LL W EL I + + D G V + + R ++++ +
Sbjct: 304 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 363
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ +D E +RAI LF + L + + A++
Sbjct: 364 DMQMDKTELGCLRAIVLFNPDSKG---------------------LSNPAEVEALREKVY 402
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 403 ASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 448
Score = 44.3 bits (104), Expect = 2e-05
Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 7/80 (8%)
Query: 2 LLLAESWRELFILGLAQ-YLPSLDL-----GELVESCKSRHVDIEEEVIR-FQSVLNEFK 54
+LL W EL I + + D G V + + R ++++ +
Sbjct: 304 ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 363
Query: 55 VLNIDPYEYDYIRAITLFKT 74
+ +D E +RAI LF
Sbjct: 364 DMQMDKTELGCLRAIVLFNP 383
>1yye_A ER-beta, estrogen receptor beta; ER-beta, nuclear receptor,
transcription factor, agonist; HET: 196; 2.03A {Homo
sapiens} SCOP: a.123.1.1 PDB: 1yy4_A*
Length = 268
Score = 76.1 bits (187), Expect = 1e-16
Identities = 27/168 (16%), Positives = 55/168 (32%), Gaps = 22/168 (13%)
Query: 86 LLLAESWRELFILGLAQYLPSLDL-GELV--------ESCKSRHVDIEEEVIRFQSVLNE 136
LL W E+ ++GL S+D G+L+ I E + +
Sbjct: 67 RLLESCWMEVLMMGLMWR--SIDHPGKLIFAPDLVLDRDEGKCVEGILEIFDMLLATTSR 124
Query: 137 FKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGH 196
F+ L + EY ++A+ L + + +++ D S L V
Sbjct: 125 FRELKLQHKEYLCVKAMILLNS----SMYPLVTATQDADSSRKLAHLLNAVT-------D 173
Query: 197 TQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
+++ Q R + ++L ++ + +E L
Sbjct: 174 ALVWVIAKSGISSQQQSMRLANLLMLLSHVRHASNKGMEHLLNMKCKN 221
Score = 44.9 bits (106), Expect = 9e-06
Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 11/82 (13%)
Query: 2 LLLAESWRELFILGLAQYLPSLDL-GELV--------ESCKSRHVDIEEEVIRFQSVLNE 52
LL W E+ ++GL S+D G+L+ I E + +
Sbjct: 67 RLLESCWMEVLMMGLMWR--SIDHPGKLIFAPDLVLDRDEGKCVEGILEIFDMLLATTSR 124
Query: 53 FKVLNIDPYEYDYIRAITLFKT 74
F+ L + EY ++A+ L +
Sbjct: 125 FRELKLQHKEYLCVKAMILLNS 146
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding,
HOST-virus interaction, metal-binding, nucleus,
receptor, transcription, transcription regulation,
zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo
sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Length = 419
Score = 77.0 bits (189), Expect = 2e-16
Identities = 28/181 (15%), Positives = 55/181 (30%), Gaps = 28/181 (15%)
Query: 86 LLLAESWRELFILGLAQYLPS----LDLGELV---ESCKSRHVDIEEEVIRFQSVLNEFK 138
LL E+ LA + + G+ E KS + + +F
Sbjct: 258 TLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFN 317
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
L +D + A+ + D L +V I IQ +
Sbjct: 318 ALELDDSDLAIFIAVIILSG-------DRPG--------------LLNVKPIEDIQDNLL 356
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 258
L + +P F K+ + L+ I + ++ L + ++ + +YK
Sbjct: 357 QALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPLLQEIYK 416
Query: 259 N 259
+
Sbjct: 417 D 417
Score = 42.4 bits (99), Expect = 8e-05
Identities = 13/80 (16%), Positives = 24/80 (30%), Gaps = 7/80 (8%)
Query: 2 LLLAESWRELFILGLAQYLPS----LDLGELV---ESCKSRHVDIEEEVIRFQSVLNEFK 54
LL E+ LA + + G+ E KS + + +F
Sbjct: 258 TLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFN 317
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L +D + A+ +
Sbjct: 318 ALELDDSDLAIFIAVIILSG 337
>1hg4_A Ultraspiracle; nuclear hormone receptor, transcription factor,
ligand binding; HET: LPP; 2.4A {Drosophila melanogaster}
SCOP: a.123.1.1
Length = 279
Score = 75.4 bits (185), Expect = 3e-16
Identities = 35/194 (18%), Positives = 59/194 (30%), Gaps = 57/194 (29%)
Query: 86 LLLAESWRELFILGLAQ-YLPSLDLGELVESCK--------------------------- 117
+LL +W EL I +A + SLD G
Sbjct: 83 ILLKAAWIELLIANVAWCSIVSLDDGGAGGGGGGLGHDGSFERRSPGLQPQQLFLNQSFS 142
Query: 118 -----SRHVDIEEEVIR-FQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSS 171
+ + R + + K LN+D E ++AI L+
Sbjct: 143 YHRNSAIKAGVSAIFDRILSELSVKMKRLNLDRRELSCLKAIILYN-------------- 188
Query: 172 SSDDGSEHPESC-LRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIP 230
P+ ++ I + L+++ +P RF ++ L LP L+SI
Sbjct: 189 --------PDIRGIKSRAEIEMCREKVYACLDEHCRLEHPGDDGRFAQLLLRLPALRSIS 240
Query: 231 SLVLEELFFRNIIG 244
+ LF I
Sbjct: 241 LKCQDHLFLFRITS 254
>3k6p_A Steroid hormone receptor ERR1; estrogen related receptor alpha,
DNA-binding, isopeptide BON binding, nucleus,
phosphoprotein, transcription; HET: 5FB; 2.00A {Homo
sapiens} PDB: 1xb7_A 2pjl_A* 3d24_A
Length = 248
Score = 74.8 bits (184), Expect = 3e-16
Identities = 32/183 (17%), Positives = 61/183 (33%), Gaps = 32/183 (17%)
Query: 86 LLLAESWRELFILGLAQ-YLPSLDLGELVESCK-----SRHVDIEEEVIRFQSVLNEFKV 139
+L W E+ +LG+AQ LP D E +R + E ++ +
Sbjct: 84 SVLQSVWMEVLVLGVAQRSLPLQDELAFAEDLVLDEEGARAAGLGELGAALLQLVRRLQA 143
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQI 199
L ++ EY ++A+ L + + D A+ ++
Sbjct: 144 LRLEREEYVLLKALALANSDSVH---------------------IEDAEAVEQLREALHE 182
Query: 200 FLNKYIHTVY----PSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWH 255
L +Y ++ R ++ L LP L+ VL + + G + K
Sbjct: 183 ALLEYEAGRAGPGGGAERRRAGRLLLTLPLLRQTAGKVLAHFYGVKLEG-KVPMHKLFLE 241
Query: 256 MYK 258
M +
Sbjct: 242 MLE 244
Score = 46.6 bits (111), Expect = 2e-06
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
Query: 2 LLLAESWRELFILGLAQ-YLPSLDLGELVESCK-----SRHVDIEEEVIRFQSVLNEFKV 55
+L W E+ +LG+AQ LP D E +R + E ++ +
Sbjct: 84 SVLQSVWMEVLVLGVAQRSLPLQDELAFAEDLVLDEEGARAAGLGELGAALLQLVRRLQA 143
Query: 56 LNIDPYEYDYIRAITLFKT 74
L ++ EY ++A+ L +
Sbjct: 144 LRLEREEYVLLKALALANS 162
>3oll_A Estrogen receptor beta; steroid binding, phosphorylation, hormone
receptor-activator; HET: PTR EST; 1.50A {Homo sapiens}
PDB: 1u3s_A* 1u3q_A* 1x78_A* 1x7b_A* 1x7j_A* 1x76_A*
2yjd_A* 3ols_A* 3omo_A* 3omp_A* 3omq_A* 1u3r_A* 1u9e_A*
1qkm_A* 2giu_A* 1nde_A* 2jj3_A* 2i0g_A* 2qtu_A* 2z4b_A*
...
Length = 240
Score = 74.4 bits (183), Expect = 4e-16
Identities = 27/168 (16%), Positives = 55/168 (32%), Gaps = 22/168 (13%)
Query: 86 LLLAESWRELFILGLAQYLPSLDL-GELV--------ESCKSRHVDIEEEVIRFQSVLNE 136
LL W E+ ++GL S+D G+L+ I E + +
Sbjct: 69 RLLESCWMEVLMMGLMWR--SIDHPGKLIFAPDLVLDRDEGKCVEGILEIFDMLLATTSR 126
Query: 137 FKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGH 196
F+ L + EY ++A+ L + + +++ D S L V
Sbjct: 127 FRELKLQHKEYLCVKAMILLNS----SMYPLVTATQDADSSRKLAHLLNAVTD------- 175
Query: 197 TQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
+++ Q R + ++L ++ + +E L
Sbjct: 176 ALVWVIAKSGISSQQQSMRLANLLMLLSHVRHASNKGMEHLLNMKCKN 223
Score = 44.7 bits (106), Expect = 8e-06
Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 11/82 (13%)
Query: 2 LLLAESWRELFILGLAQYLPSLDL-GELV--------ESCKSRHVDIEEEVIRFQSVLNE 52
LL W E+ ++GL S+D G+L+ I E + +
Sbjct: 69 RLLESCWMEVLMMGLMWR--SIDHPGKLIFAPDLVLDRDEGKCVEGILEIFDMLLATTSR 126
Query: 53 FKVLNIDPYEYDYIRAITLFKT 74
F+ L + EY ++A+ L +
Sbjct: 127 FRELKLQHKEYLCVKAMILLNS 148
>1l2j_A Estrogen receptor beta; nuclear receptor, transcription factor,
antagonist transcription receptor; HET: ETC; 2.95A {Homo
sapiens} SCOP: a.123.1.1
Length = 271
Score = 73.9 bits (181), Expect = 9e-16
Identities = 25/167 (14%), Positives = 52/167 (31%), Gaps = 20/167 (11%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELV--------ESCKSRHVDIEEEVIRFQSVLNEF 137
LL W E+ ++GL G+L+ I E + + F
Sbjct: 95 RLLESCWMEVLMMGLMWRSIDHP-GKLIFAPDLVLDRDEGKCVEGILEIFDMLLATTSRF 153
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ L + EY ++A+ L + + +++ D S L V
Sbjct: 154 RELKLQHKEYLCVKAMILLNS----SMYPLVTATQDADSSRKLAHLLNAVT-------DA 202
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
+++ Q R + ++L ++ + +E L
Sbjct: 203 LVWVIAKSGISSQQQSMRLANLLMLLSHVRHASNKGMEHLLNMKCKN 249
Score = 41.5 bits (97), Expect = 1e-04
Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 9/81 (11%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELV--------ESCKSRHVDIEEEVIRFQSVLNEF 53
LL W E+ ++GL G+L+ I E + + F
Sbjct: 95 RLLESCWMEVLMMGLMWRSIDHP-GKLIFAPDLVLDRDEGKCVEGILEIFDMLLATTSRF 153
Query: 54 KVLNIDPYEYDYIRAITLFKT 74
+ L + EY ++A+ L +
Sbjct: 154 RELKLQHKEYLCVKAMILLNS 174
>3ltx_A Estrogen receptor; constitutive, nuclear receptor, DNA-binding,
metal-binding, nucleus, transcription, transcription
regulation, zinc-finger; 2.60A {Crassostrea gigas}
Length = 243
Score = 72.4 bits (178), Expect = 2e-15
Identities = 20/167 (11%), Positives = 46/167 (27%), Gaps = 32/167 (19%)
Query: 87 LLAESWRELFILGLAQYLPSLDL---------GELVESCKSRHVDIEEEVIRFQSVLNEF 137
L+ W EL +L A S++ +++ V++ E + +V +
Sbjct: 73 LIECCWMELLLLNCAFR--SIEHGGKSLAFAPDLVLDRSSWSTVEMTEIFEQVAAVSEQM 130
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
++ E ++A+ L + L I +Q
Sbjct: 131 MQNHLHKDELLLLQAMVLVNAEVRR---------------------LASYNQIFNMQQSL 169
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
+ +P + L+L ++ + G
Sbjct: 170 LDAIVDTAQKYHPDNVRHVPAVLLLLTHIRQAGERGIAFFQRLKSEG 216
Score = 40.5 bits (95), Expect = 2e-04
Identities = 13/81 (16%), Positives = 30/81 (37%), Gaps = 11/81 (13%)
Query: 3 LLAESWRELFILGLAQYLPSLDL---------GELVESCKSRHVDIEEEVIRFQSVLNEF 53
L+ W EL +L A S++ +++ V++ E + +V +
Sbjct: 73 LIECCWMELLLLNCAFR--SIEHGGKSLAFAPDLVLDRSSWSTVEMTEIFEQVAAVSEQM 130
Query: 54 KVLNIDPYEYDYIRAITLFKT 74
++ E ++A+ L
Sbjct: 131 MQNHLHKDELLLLQAMVLVNA 151
>1ovl_A Orphan nuclear receptor NURR1 (MSe 414, 496, 511); NUUR1, LBD,
transcription; 2.20A {Homo sapiens} SCOP: a.123.1.1
Length = 271
Score = 69.0 bits (169), Expect = 5e-14
Identities = 26/166 (15%), Positives = 56/166 (33%), Gaps = 29/166 (17%)
Query: 86 LLLAESWRELFILGLAQ-YLPSLD----LGELVESCKSRHVDIEEEVIRFQSVLNEFKVL 140
LL ++ ELF+L LA P +V E + + + +
Sbjct: 110 LLFESAFLELFVLRLAYRSNPVEGKLIFCNGVVLHRLQCVRGFGEWIDSIVEFSSNLQNM 169
Query: 141 NIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIF 200
NID + I A+ + ++ L++ + +Q
Sbjct: 170 NIDISAFSCIAALAMV----------------TER------HGLKEPKRVEELQNKIVNC 207
Query: 201 LNKYIHTVYP--SQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L ++ ++P K+ LP L+++ + L+ +F+ +
Sbjct: 208 LKDHVTFNNGGLNRPNYLSKLLGKLPELRTLCTQGLQRIFYLKLED 253
Score = 40.1 bits (94), Expect = 4e-04
Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 9/86 (10%)
Query: 2 LLLAESWRELFILGLAQ-YLPSLD----LGELVESCKSRHVDIEEEVIRFQSVLNEFKVL 56
LL ++ ELF+L LA P +V E + + + +
Sbjct: 110 LLFESAFLELFVLRLAYRSNPVEGKLIFCNGVVLHRLQCVRGFGEWIDSIVEFSSNLQNM 169
Query: 57 NIDPYEYDYIRAITLFKTAFTSRREL 82
NID + I A+ + T R L
Sbjct: 170 NIDISAFSCIAALAM----VTERHGL 191
>1yje_A Orphan nuclear receptor NR4A1; NGFI-B, NUR77, ligand-binding
domain, novel coregulator interface, cell-specific;
2.40A {Rattus norvegicus} PDB: 2qw4_A
Length = 264
Score = 67.5 bits (165), Expect = 2e-13
Identities = 31/170 (18%), Positives = 61/170 (35%), Gaps = 35/170 (20%)
Query: 86 LLLAESWRELFILGLAQ-YLPS-----LDLGELV--ESCKSRHVDIEEEVIRFQSVLNEF 137
LLL ++ ELFIL LA P G ++ C D + ++ F L+
Sbjct: 103 LLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFGDWIDNILAFSRSLHS- 161
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
L +D + + A+ L ++ L+D + +Q
Sbjct: 162 --LGVDVPAFACLSALVLI--------------------TDRH--GLQDPRRVEELQNRI 197
Query: 198 QIFLNKYIHTVY--PSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
L +++ V P + ++ LP L+++ + L+ +F +
Sbjct: 198 ASCLKEHMAAVAGDPQPASCLSRLLGKLPELRTLCTQGLQRIFCLKLEDL 247
Score = 39.4 bits (92), Expect = 5e-04
Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 16/111 (14%)
Query: 2 LLLAESWRELFILGLAQ-YLPS-----LDLGELV--ESCKSRHVDIEEEVIRFQSVLNEF 53
LLL ++ ELFIL LA P G ++ C D + ++ F L+
Sbjct: 103 LLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFGDWIDNILAFSRSLHS- 161
Query: 54 KVLNIDPYEYDYIRAITLFKTAFTSRRELAGHLLLAESWRELFILGLAQYL 104
L +D + + A+ L T R L + E + L +++
Sbjct: 162 --LGVDVPAFACLSALVL----ITDRHGLQDPRRV-EELQNRIASCLKEHM 205
>1t7r_A Androgen receptor; nuclear receptor, transcription factor, ligand
binding domain, AF-2, androgen, testosterone, DHT,
alpha-helical sandwich; HET: DHT; 1.40A {Pan
troglodytes} SCOP: a.123.1.1 PDB: 1t73_A* 1t76_A*
1t74_A* 1t79_A* 1t7m_A* 1t7f_A* 1t7t_A* 2am9_A* 2ama_A*
2amb_A* 2pnu_A* 1e3g_A* 2q7i_A* 1xj7_A* 2q7j_A* 3g0w_A*
2ihq_A* 2nw4_A* 1i37_A* 2q7k_A* ...
Length = 269
Score = 66.9 bits (163), Expect = 3e-13
Identities = 24/165 (14%), Positives = 55/165 (33%), Gaps = 31/165 (18%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD--------IEEEVIRFQSVLNEF 137
++ SW L + + + ++ + + + +R + + EF
Sbjct: 85 AVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHKSRMYSQCVRMRHLSQEF 144
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
L I P E+ ++A+ LF S P L++ ++ +
Sbjct: 145 GWLQITPQEFLCMKALLLF--------------------SIIPVDGLKNQKFFDELRMNY 184
Query: 198 QIFLNKYIHTVY---PSQPTRFCKIQLILPRLKSIPSLVLEELFF 239
L++ I S RF ++ +L ++ I + + F
Sbjct: 185 IKELDRIIACKRKNPTSCSRRFYQLTKLLDSVQPIARELHQFTFD 229
Score = 43.4 bits (102), Expect = 3e-05
Identities = 13/81 (16%), Positives = 30/81 (37%), Gaps = 8/81 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD--------IEEEVIRFQSVLNEF 53
++ SW L + + + ++ + + + +R + + EF
Sbjct: 85 AVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHKSRMYSQCVRMRHLSQEF 144
Query: 54 KVLNIDPYEYDYIRAITLFKT 74
L I P E+ ++A+ LF
Sbjct: 145 GWLQITPQEFLCMKALLLFSI 165
>3mnp_A Glucocorticoid receptor; protein-ligand complex, steroid nuclear
receptor, mouse GR, hormone receptor; HET: DEX; 1.50A
{Mus musculus} PDB: 3mno_A* 3mne_A* 1m2z_A* 3k22_A*
3cld_A* 3k23_A* 3e7c_A* 1nhz_A* 1p93_A* 3bqd_A* 3h52_A*
3gn8_A* 4e2j_A*
Length = 261
Score = 66.9 bits (163), Expect = 3e-13
Identities = 25/165 (15%), Positives = 47/165 (28%), Gaps = 31/165 (18%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD--------IEEEVIRFQSVLNEF 137
LL SW L + L G L+ ++ + ++ + E
Sbjct: 78 TLLQYSWMFLMVFALGWRSYRQASGNLLCFAPDLIINEQRMTLPCMYDQCKHMLFISTEL 137
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ L + EY ++ + L S P+ L+ I+
Sbjct: 138 QRLQVSYEEYLCMKTLLLL--------------------SSVPKEGLKSQELFDEIRMTY 177
Query: 198 QIFLNKYI---HTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFF 239
L K I RF ++ +L + + +L F
Sbjct: 178 IKELGKAIAKRGGNSSQNWQRFYQLTKLLDSMHDVVENLLSYCFQ 222
Score = 42.6 bits (100), Expect = 6e-05
Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 8/81 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD--------IEEEVIRFQSVLNEF 53
LL SW L + L G L+ ++ + ++ + E
Sbjct: 78 TLLQYSWMFLMVFALGWRSYRQASGNLLCFAPDLIINEQRMTLPCMYDQCKHMLFISTEL 137
Query: 54 KVLNIDPYEYDYIRAITLFKT 74
+ L + EY ++ + L +
Sbjct: 138 QRLQVSYEEYLCMKTLLLLSS 158
>3u9q_A Peroxisome proliferator-activated receptor gamma; nuclear receptor,
adipogenesis, RXRA, nucleus, transcription; HET: DKA;
1.52A {Homo sapiens} PDB: 1i7i_A* 3ty0_A* 1zeo_A*
2p4y_A* 3et3_A* 3et0_A* 2hwq_A* 2ath_A* 2f4b_A* 2g0g_A*
2g0h_A* 2gtk_A* 2fvj_A* 2hwr_A* 2prg_A* 2q8s_A* 3fej_A*
3g9e_A* 3gbk_A* 3ia6_A* ...
Length = 269
Score = 65.9 bits (161), Expect = 6e-13
Identities = 30/184 (16%), Positives = 55/184 (29%), Gaps = 34/184 (18%)
Query: 86 LLLAESWRELFILGLAQ-YLPSLDL---------GELVESCKSRHVDIEEEVIRFQSVLN 135
LL E+ LA L E ++S + D E F N
Sbjct: 109 TLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFN 168
Query: 136 EFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQG 195
L +D + A+ + + P L +V I IQ
Sbjct: 169 A---LELDDSDLAIFIAVIILS-------------------GDRP--GLLNVKPIEDIQD 204
Query: 196 HTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWH 255
+ L + +P F K+ + L+ I + ++ L + ++ +
Sbjct: 205 NLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPLLQE 264
Query: 256 MYKN 259
+YK+
Sbjct: 265 IYKD 268
Score = 35.9 bits (83), Expect = 0.007
Identities = 15/82 (18%), Positives = 23/82 (28%), Gaps = 13/82 (15%)
Query: 2 LLLAESWRELFILGLAQ-YLPSLDL---------GELVESCKSRHVDIEEEVIRFQSVLN 51
LL E+ LA L E ++S + D E F N
Sbjct: 109 TLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFN 168
Query: 52 EFKVLNIDPYEYDYIRAITLFK 73
L +D + A+ +
Sbjct: 169 A---LELDDSDLAIFIAVIILS 187
>1sqn_A PR, progesterone receptor; nuclear receptor, steroid receptor,
norethindrone, birth control, hormone/growth factor
receptior complex; HET: NDR; 1.45A {Homo sapiens} SCOP:
a.123.1.1 PDB: 3g8o_A* 3g8n_A* 3d90_A* 1e3k_A* 1sr7_A*
1zuc_B* 3zr7_A* 2w8y_A* 3zra_A* 3zrb_A* 4a2j_A* 4apu_A*
1a28_A* 2ovh_A* 2ovm_A* 3hq5_A* 3kba_A*
Length = 261
Score = 65.7 bits (160), Expect = 7e-13
Identities = 23/164 (14%), Positives = 45/164 (27%), Gaps = 31/164 (18%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD--------IEEEVIRFQSVLNEF 137
L+ SW L + GL G+++ ++ + + EF
Sbjct: 77 TLIQYSWMSLMVFGLGWRSYKHVSGQMLYFAPDLILNEQRMKESSFYSLCLTMWQIPQEF 136
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
L + E+ ++ + L T+ P LR ++
Sbjct: 137 VKLQVSQEEFLCMKVLLLLNTI--------------------PLEGLRSQTQFEEMRSSY 176
Query: 198 QIFLNKYIHTVYPS---QPTRFCKIQLILPRLKSIPSLVLEELF 238
L K I RF ++ +L L + +
Sbjct: 177 IRELIKAIGLRQKGVVSSSQRFYQLTKLLDNLHDLVKQLHLYCL 220
Score = 43.0 bits (101), Expect = 4e-05
Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 8/81 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD--------IEEEVIRFQSVLNEF 53
L+ SW L + GL G+++ ++ + + EF
Sbjct: 77 TLIQYSWMSLMVFGLGWRSYKHVSGQMLYFAPDLILNEQRMKESSFYSLCLTMWQIPQEF 136
Query: 54 KVLNIDPYEYDYIRAITLFKT 74
L + E+ ++ + L T
Sbjct: 137 VKLQVSQEEFLCMKVLLLLNT 157
>3cqv_A Nuclear receptor subfamily 1 group D member 2; reverb beta, heme,
NR1D2, DNA-binding, metal-binding, nucleus, repressor,
transcription; HET: HEM; 1.90A {Homo sapiens} PDB:
2v7c_A 2v0v_A
Length = 199
Score = 63.9 bits (156), Expect = 1e-12
Identities = 32/163 (19%), Positives = 57/163 (34%), Gaps = 33/163 (20%)
Query: 86 LLLAESWRELFILGLAQ-YLPSLDLGELV-------ESCKS-RHVDIEEEVIRFQSVLNE 136
LL E+ ++ A + + + S D+ + F LN
Sbjct: 56 NLLKAGTFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNA 115
Query: 137 FKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGH 196
L + E A+ L S+D S + +V ++ A+Q
Sbjct: 116 ---LQLSDEEMSLFTAVVLV---------------SAD------RSGIENVNSVEALQET 151
Query: 197 TQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFF 239
L I +P++ + F K+ L LP L+S+ ++ EEL
Sbjct: 152 LIRALRTLIMKNHPNEASIFTKLLLKLPDLRSLNNMHSEELLA 194
Score = 35.8 bits (83), Expect = 0.007
Identities = 13/80 (16%), Positives = 23/80 (28%), Gaps = 12/80 (15%)
Query: 2 LLLAESWRELFILGLAQ-YLPSLDLGELV-------ESCKS-RHVDIEEEVIRFQSVLNE 52
LL E+ ++ A + + + S D+ + F LN
Sbjct: 56 NLLKAGTFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNA 115
Query: 53 FKVLNIDPYEYDYIRAITLF 72
L + E A+ L
Sbjct: 116 ---LQLSDEEMSLFTAVVLV 132
>3n00_A REV-ERBA-alpha; reverba ncorid1, anti-parallel B-sheet,
transcription regula; 2.60A {Homo sapiens}
Length = 245
Score = 64.8 bits (158), Expect = 1e-12
Identities = 23/166 (13%), Positives = 52/166 (31%), Gaps = 27/166 (16%)
Query: 86 LLLAESWRELFILGLAQ-YLPSLDL-----GELVESCKSRHVDIEEEVIRFQSVLNEFKV 139
LL E+ ++ A + + + + + + +
Sbjct: 101 TLLKAGTFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLSAMFDFSEKLNS 160
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQI 199
L + E A+ L S+D S + + ++ +Q
Sbjct: 161 LALTEEELGLFTAVVLV---------------SAD------RSGMENSASVEQLQETLLR 199
Query: 200 FLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
L + P + +RF K+ L LP L+++ ++ E+L +
Sbjct: 200 ALRALVLKNRPLETSRFTKLLLKLPDLRTLNNMHSEKLLSFRVDAQ 245
Score = 36.7 bits (85), Expect = 0.005
Identities = 8/77 (10%), Positives = 20/77 (25%), Gaps = 6/77 (7%)
Query: 2 LLLAESWRELFILGLAQ-YLPSLDL-----GELVESCKSRHVDIEEEVIRFQSVLNEFKV 55
LL E+ ++ A + + + + + + +
Sbjct: 101 TLLKAGTFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLSAMFDFSEKLNS 160
Query: 56 LNIDPYEYDYIRAITLF 72
L + E A+ L
Sbjct: 161 LALTEEELGLFTAVVLV 177
>3ipq_A Oxysterols receptor LXR-alpha; LXR homodimer, LXR signaling,
alternative DNA-binding, metal-binding, nucleus,
polymorphism, receptor transcription; HET: 965; 2.00A
{Homo sapiens} PDB: 3ips_A* 3ipu_A* 3fc6_B* 3fal_B*
1uhl_B* 2acl_B* 1upv_A* 1upw_A* 1p8d_A* 1pq9_A* 1pq6_A*
1pqc_A* 3kfc_A* 4dk7_A* 4dk8_A* 3l0e_A*
Length = 283
Score = 64.4 bits (157), Expect = 2e-12
Identities = 29/164 (17%), Positives = 60/164 (36%), Gaps = 34/164 (20%)
Query: 86 LLLAESWRELFILGLAQY--------LPSLDLGELVESCKS--RHVDIEEEVIRFQSVLN 135
LL S E+ +L ++ D E V+ + F +N
Sbjct: 124 ALLKTSAIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMN 183
Query: 136 EFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQG 195
E L ++ E+ + AI++F S+D ++D + + +Q
Sbjct: 184 E---LQLNDAEFALLIAISIF---------------SAD------RPNVQDQLQVERLQH 219
Query: 196 HTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFF 239
L+ Y+ +P F ++ + L L+++ S+ E++F
Sbjct: 220 TYVEALHAYVSIHHPHDRLMFPRMLMKLVSLRTLSSVHSEQVFA 263
Score = 36.3 bits (84), Expect = 0.006
Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 13/81 (16%)
Query: 2 LLLAESWRELFILGLAQY--------LPSLDLGELVESCKS--RHVDIEEEVIRFQSVLN 51
LL S E+ +L ++ D E V+ + F +N
Sbjct: 124 ALLKTSAIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMN 183
Query: 52 EFKVLNIDPYEYDYIRAITLF 72
E L ++ E+ + AI++F
Sbjct: 184 E---LQLNDAEFALLIAISIF 201
>1osh_A BIle acid receptor; nuclear receptor, ligand binding domain,
transcription; HET: FEX; 1.80A {Homo sapiens} SCOP:
a.123.1.1 PDB: 3l1b_A* 3bej_A* 3fli_A* 3hc5_A* 3rvf_A*
3dct_A* 3dcu_A* 3ruu_A* 3rut_A* 3olf_A* 3okh_A* 3fxv_A*
3oki_A* 3omk_A* 3omm_A* 3oof_A* 3ook_A* 3hc6_A* 3p89_A*
3p88_A* ...
Length = 232
Score = 63.1 bits (154), Expect = 4e-12
Identities = 32/160 (20%), Positives = 49/160 (30%), Gaps = 30/160 (18%)
Query: 86 LLLAESWRELFILGLAQY----LPSLDLGELVESCKSRHV--DIEEEVIRFQSVLNEFKV 139
LL S E L A+ LPS L E ++ + + + F + E
Sbjct: 78 ALLKGSAVEAMFLRSAEIFNKKLPSGHSDLLEERIRNSGISDEYITPMFSFYKSIGE--- 134
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQI 199
L + EY + AI + S D ++D A+ +Q
Sbjct: 135 LKMTQEEYALLTAIVIL---------------SPD----RQ--YIKDREAVEKLQEPLLD 173
Query: 200 FLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFF 239
L K P P F + L L++ E L
Sbjct: 174 VLQKLCKIHQPENPQHFACLLGRLTELRTFNHHHAEMLMS 213
Score = 37.3 bits (87), Expect = 0.003
Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 9/77 (11%)
Query: 2 LLLAESWRELFILGLAQY----LPSLDLGELVESCKSRHV--DIEEEVIRFQSVLNEFKV 55
LL S E L A+ LPS L E ++ + + + F + E
Sbjct: 78 ALLKGSAVEAMFLRSAEIFNKKLPSGHSDLLEERIRNSGISDEYITPMFSFYKSIGE--- 134
Query: 56 LNIDPYEYDYIRAITLF 72
L + EY + AI +
Sbjct: 135 LKMTQEEYALLTAIVIL 151
>2hc4_A Vitamin D receptor; alpha helical sandwich, gene regulation; HET:
VDX; 2.20A {Danio rerio} PDB: 2hbh_A* 2hcd_A* 3dr1_A*
3o1d_A* 3o1e_A*
Length = 302
Score = 63.7 bits (155), Expect = 5e-12
Identities = 27/161 (16%), Positives = 48/161 (29%), Gaps = 29/161 (18%)
Query: 87 LLAESWRELFILGLAQ-YLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNE-------FK 138
LL S E+ +L Q + ++ + +L K
Sbjct: 139 LLKSSAIEIIMLRSNQSFSLEDMSWSCGGPDFKYCINDVTKAGHTLELLEPLVKFQVGLK 198
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
L + E+ + AI L S D ++D + I A+Q
Sbjct: 199 KLKLHEEEHVLLMAICLL---------------SPD------RPGVQDHVRIEALQDRLC 237
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFF 239
L YI +P + K+ L L+S+ ++
Sbjct: 238 DVLQAYIRIQHPGGRLLYAKMIQKLADLRSLNEEHSKQYRS 278
Score = 37.1 bits (86), Expect = 0.003
Identities = 13/78 (16%), Positives = 23/78 (29%), Gaps = 8/78 (10%)
Query: 3 LLAESWRELFILGLAQ-YLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNE-------FK 54
LL S E+ +L Q + ++ + +L K
Sbjct: 139 LLKSSAIEIIMLRSNQSFSLEDMSWSCGGPDFKYCINDVTKAGHTLELLEPLVKFQVGLK 198
Query: 55 VLNIDPYEYDYIRAITLF 72
L + E+ + AI L
Sbjct: 199 KLKLHEEEHVLLMAICLL 216
>3vhv_A Mineralocorticoid receptor; nuclear receptor, transcription factor,
activating mutation, hypertension, non-steroidal
antagonist; HET: LD1 LD2; 1.35A {Homo sapiens} PDB:
2aax_A* 2aa6_A* 2ab2_A* 2aa2_A* 2aa5_A* 2aa7_A* 2a3i_A*
1y9r_A* 1ya3_A* 2oax_A* 2abi_A* 2q1h_A* 2q1v_A* 2q3y_A*
3ry9_A*
Length = 260
Score = 62.6 bits (152), Expect = 9e-12
Identities = 26/170 (15%), Positives = 50/170 (29%), Gaps = 31/170 (18%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIE--------EEVIRFQSVLNEFK 138
L+ SW L L+ + + + E E + +F
Sbjct: 77 LIQYSWMSLLSFALSWRSYKHTNSQFLYFAPDLVFNEEKMHQSAMYELCQGMHQISLQFV 136
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
L + EY ++ + L S P+ L+ A ++ +
Sbjct: 137 RLQLTFEEYTIMKVLLLL--------------------STIPKDGLKSQAAFEEMRTNYI 176
Query: 199 IFLNKYI---HTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
L K + RF ++ +L + + S +LE F+ H
Sbjct: 177 KELRKMVTKCPNNSGQSWQRFYQLTKLLDSMHDLVSDLLEFCFYTFRESH 226
Score = 38.4 bits (89), Expect = 0.001
Identities = 13/80 (16%), Positives = 24/80 (30%), Gaps = 8/80 (10%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIE--------EEVIRFQSVLNEFK 54
L+ SW L L+ + + + E E + +F
Sbjct: 77 LIQYSWMSLLSFALSWRSYKHTNSQFLYFAPDLVFNEEKMHQSAMYELCQGMHQISLQFV 136
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L + EY ++ + L T
Sbjct: 137 RLQLTFEEYTIMKVLLLLST 156
>3kmr_A Retinoic acid receptor alpha; nuclear receptor transcription factor
ligand binding domain, binding, metal-binding, nucleus,
phosphoprotein; HET: EQN; 1.80A {Homo sapiens} PDB:
3kmz_B* 3a9e_B* 4dm6_A* 1xap_A* 4dm8_A* 2lbd_A* 3lbd_A*
4lbd_A*
Length = 266
Score = 62.4 bits (152), Expect = 1e-11
Identities = 30/169 (17%), Positives = 52/169 (30%), Gaps = 33/169 (19%)
Query: 86 LLLAESWRELFILGLAQ-YLPSLDLGELV--------ESCKSRHVDIEEEVIRFQSVLNE 136
LL + ++ IL + Y P D + + + + V F + L
Sbjct: 104 TLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLP 163
Query: 137 FKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGH 196
L +D E + AI L D L + +Q
Sbjct: 164 ---LEMDDAETGLLSAICLI---------------CGD------RQDLEQPDRVDMLQEP 199
Query: 197 TQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
L Y+ PS+P F K+ + + L+SI + E + +
Sbjct: 200 LLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIP 248
Score = 34.7 bits (80), Expect = 0.021
Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 12/80 (15%)
Query: 2 LLLAESWRELFILGLAQ-YLPSLDLGELV--------ESCKSRHVDIEEEVIRFQSVLNE 52
LL + ++ IL + Y P D + + + + V F + L
Sbjct: 104 TLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLP 163
Query: 53 FKVLNIDPYEYDYIRAITLF 72
L +D E + AI L
Sbjct: 164 ---LEMDDAETGLLSAICLI 180
>3vhu_A Mineralocorticoid receptor; nuclear receptor, transcription factor,
activating mutation, hypertension, antagonist,
spironolactone; HET: SNL; 2.11A {Homo sapiens}
Length = 294
Score = 61.9 bits (150), Expect = 2e-11
Identities = 26/171 (15%), Positives = 50/171 (29%), Gaps = 31/171 (18%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIE--------EEVIRFQSVLNEF 137
L+ SW L L+ + + + E E + +F
Sbjct: 110 TLIQYSWMSLLSFALSWRSYKHTNSQFLYFAPDLVFNEEKMHQSAMYELCQGMHQISLQF 169
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
L + EY ++ + L S P+ L+ A ++ +
Sbjct: 170 VRLQLTFEEYTIMKVLLLL--------------------STIPKDGLKSQAAFEEMRTNY 209
Query: 198 QIFLNKYI---HTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
L K + RF ++ +L + + S +LE F+ H
Sbjct: 210 IKELRKMVTKCPNNSGQSWQRFYQLTKLLDSMHDLVSDLLEFCFYTFRESH 260
Score = 38.8 bits (90), Expect = 0.001
Identities = 13/81 (16%), Positives = 24/81 (29%), Gaps = 8/81 (9%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIE--------EEVIRFQSVLNEF 53
L+ SW L L+ + + + E E + +F
Sbjct: 110 TLIQYSWMSLLSFALSWRSYKHTNSQFLYFAPDLVFNEEKMHQSAMYELCQGMHQISLQF 169
Query: 54 KVLNIDPYEYDYIRAITLFKT 74
L + EY ++ + L T
Sbjct: 170 VRLQLTFEEYTIMKVLLLLST 190
>1xdk_B RAR-beta, retinoic acid receptor, beta; nuclear receptor,
coactivator, ligand, hormone/growth factor receptor
complex; HET: REA; 2.90A {Mus musculus} SCOP: a.123.1.1
Length = 303
Score = 61.7 bits (150), Expect = 2e-11
Identities = 33/163 (20%), Positives = 54/163 (33%), Gaps = 33/163 (20%)
Query: 86 LLLAESWRELFILGLAQ-YLPSLDL-----GELV---ESCKSRHVDIEEEVIRFQSVLNE 136
LL + ++ IL + Y P D G + + + + + V F + L
Sbjct: 107 TLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLP 166
Query: 137 FKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGH 196
L +D E + AI L D L + + +Q
Sbjct: 167 ---LEMDDTETGLLSAICLI---------------CGD------RQDLEEPTKVDKLQEP 202
Query: 197 TQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFF 239
L YI PS+P F KI + + L+SI + E +
Sbjct: 203 LLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVIT 245
Score = 35.2 bits (81), Expect = 0.014
Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 12/80 (15%)
Query: 2 LLLAESWRELFILGLAQ-YLPSLDL-----GELV---ESCKSRHVDIEEEVIRFQSVLNE 52
LL + ++ IL + Y P D G + + + + + V F + L
Sbjct: 107 TLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLP 166
Query: 53 FKVLNIDPYEYDYIRAITLF 72
L +D E + AI L
Sbjct: 167 ---LEMDDTETGLLSAICLI 183
>1fcy_A RAR-gamma-1, retinoic acid receptor gamma-1; isotype selectivity,
retinoid ligand complexes, drug design, antiparallel
alpha-helical sandwich fold; HET: 564 LMU; 1.30A {Homo
sapiens} SCOP: a.123.1.1 PDB: 1fcz_A* 1fcx_A* 1fd0_A*
1exa_A* 1exx_A* 1dkf_B*
Length = 236
Score = 59.3 bits (144), Expect = 9e-11
Identities = 29/169 (17%), Positives = 49/169 (28%), Gaps = 33/169 (19%)
Query: 86 LLLAESWRELFILGLAQ-YLP-------SLDLGELVESCK-SRHVDIEEEVIRFQSVLNE 136
LL + ++ +L + Y P S L + + + V F L
Sbjct: 80 TLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLP 139
Query: 137 FKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGH 196
L +D E + AI L D L + + +Q
Sbjct: 140 ---LEMDDTETGLLSAICLI---------------CGD------RMDLEEPEKVDKLQEP 175
Query: 197 TQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
L Y PSQP F ++ + + L+ I + E +
Sbjct: 176 LLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKMEIP 224
Score = 32.3 bits (74), Expect = 0.11
Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 12/80 (15%)
Query: 2 LLLAESWRELFILGLAQ-YLP-------SLDLGELVESCK-SRHVDIEEEVIRFQSVLNE 52
LL + ++ +L + Y P S L + + + V F L
Sbjct: 80 TLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLP 139
Query: 53 FKVLNIDPYEYDYIRAITLF 72
L +D E + AI L
Sbjct: 140 ---LEMDDTETGLLSAICLI 156
>3ilz_A Thyroid hormone receptor, alpha isoform 1 variant; nuclear
receptor, signaling protein; HET: B72; 1.85A {Homo
sapiens} PDB: 3jzb_A* 3hzf_A* 2h79_A* 2h77_A* 1nav_A*
3uvv_A* 1xzx_X* 1y0x_X* 1nq1_A* 3jzc_A* 1nuo_A* 3imy_A*
1nq0_A* 1bsx_A* 1r6g_A* 1nq2_A* 3gws_X* 1n46_A* 2h6w_X*
2j4a_A* ...
Length = 267
Score = 59.5 bits (144), Expect = 1e-10
Identities = 26/163 (15%), Positives = 49/163 (30%), Gaps = 33/163 (20%)
Query: 86 LLLAESWRELFILGLAQ-YLPSLDLGEL-------VESCKS-RHVDIEEEVIRFQSVLNE 136
+LL E+ L A Y P D L E K+ + + + L+
Sbjct: 106 ILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAVKREQLKNGGLGVVSDAIFELGKSLSA 165
Query: 137 FKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGH 196
N+D E ++A+ L ++ L V I Q
Sbjct: 166 ---FNLDDTEVALLQAVLLMS-------------------TDRS--GLLXVDKIEKSQEA 201
Query: 197 TQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFF 239
+ Y++ + P + K+ + + L+ I +
Sbjct: 202 YLLAFEHYVNHRKHNIPHFWPKLLMKVTDLRMIGAXHASRFLH 244
Score = 37.1 bits (86), Expect = 0.003
Identities = 24/112 (21%), Positives = 40/112 (35%), Gaps = 16/112 (14%)
Query: 2 LLLAESWRELFILGLAQ-YLPSLDLGEL-------VESCKS-RHVDIEEEVIRFQSVLNE 52
+LL E+ L A Y P D L E K+ + + + L+
Sbjct: 106 ILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAVKREQLKNGGLGVVSDAIFELGKSLSA 165
Query: 53 FKVLNIDPYEYDYIRAITLFKTAFTSRRELAGHLLLAESWRELFILGLAQYL 104
N+D E ++A+ L T R L + E +E ++L Y+
Sbjct: 166 ---FNLDDTEVALLQAVLLMS---TDRSGLLXVDKI-EKSQEAYLLAFEHYV 210
>1pdu_A DHR38, nuclear hormone receptor HR38; nuclear receptor,
ligand-binding domain, hormone/growth factor receptor
complex; 2.30A {Drosophila melanogaster} SCOP: a.123.1.1
Length = 244
Score = 58.9 bits (143), Expect = 1e-10
Identities = 29/167 (17%), Positives = 50/167 (29%), Gaps = 29/167 (17%)
Query: 86 LLLAESWRELFILGLAQ-YLPSLD----LGELVESCKSRHVDIEEEVIRFQSVLNEFKVL 140
LL + ELF+L LA V E + L
Sbjct: 83 LLFQSASLELFVLRLAYRARIDDTKLIFCNGTVLHRTQCLRSFGEWLNDIMEFSRSLHNL 142
Query: 141 NIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIF 200
ID + + A+TL +E LR+ + +Q
Sbjct: 143 EIDISAFACLCALTLI--------------------TERH--GLREPKKVEQLQMKIIGS 180
Query: 201 LNKYIHTVYPSQP--TRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
L ++ +Q F ++ LP L+S+ L+ +F+ +
Sbjct: 181 LRDHVTYNAEAQKKQHYFSRLLGKLPELRSLSVQGLQRIFYLKLEDL 227
Score = 33.9 bits (78), Expect = 0.030
Identities = 16/76 (21%), Positives = 22/76 (28%), Gaps = 5/76 (6%)
Query: 2 LLLAESWRELFILGLAQ-YLPSLD----LGELVESCKSRHVDIEEEVIRFQSVLNEFKVL 56
LL + ELF+L LA V E + L
Sbjct: 83 LLFQSASLELFVLRLAYRARIDDTKLIFCNGTVLHRTQCLRSFGEWLNDIMEFSRSLHNL 142
Query: 57 NIDPYEYDYIRAITLF 72
ID + + A+TL
Sbjct: 143 EIDISAFACLCALTLI 158
>1nrl_A Orphan nuclear receptor PXR; PXR, xenobiotic, SRC-1, ligand binding
domain, transcription; HET: SRL; 2.00A {Homo sapiens}
SCOP: a.123.1.1 PDB: 1ilh_A* 1ilg_A* 1m13_A* 2qnv_A*
3r8d_A* 3ctb_A 3ctc_A 3hvl_A* 1skx_A* 2o9i_A*
Length = 316
Score = 59.5 bits (144), Expect = 1e-10
Identities = 34/170 (20%), Positives = 53/170 (31%), Gaps = 34/170 (20%)
Query: 86 LLLAESWRELFILGLAQ-YLPSLDLGELVESCKSRH-------VDIEEEVIRFQSVLNEF 137
LL + EL L + E + E +++F +L +
Sbjct: 156 SLLKGAAFELCQLRFNTVFNAETGTWECGRLSYCLEDTAGGFQQLLLEPMLKFHYMLKK- 214
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
L + EY ++AI+LF S D + + +Q
Sbjct: 215 --LQLHEEEYVLMQAISLF---------------SPD------RPGVLQHRVVDQLQEQF 251
Query: 198 QIFLNKYIHTVYPSQPTR--FCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
I L YI P R F KI +L L+SI + + L I
Sbjct: 252 AITLKSYIECNRPQPAHRFLFLKIMAMLTELRSINAQHTQRLLRIQDIHP 301
Score = 38.7 bits (90), Expect = 0.001
Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 11/79 (13%)
Query: 2 LLLAESWRELFILGLAQ-YLPSLDLGELVESCKSRH-------VDIEEEVIRFQSVLNEF 53
LL + EL L + E + E +++F +L +
Sbjct: 156 SLLKGAAFELCQLRFNTVFNAETGTWECGRLSYCLEDTAGGFQQLLLEPMLKFHYMLKK- 214
Query: 54 KVLNIDPYEYDYIRAITLF 72
L + EY ++AI+LF
Sbjct: 215 --LQLHEEEYVLMQAISLF 231
>3up3_A Acedaf-12; ligand binding domain, nematode, steroid binding
protein- transcription complex; HET: XCA; 1.25A
{Ancylostoma ceylanicum} PDB: 3up0_A*
Length = 243
Score = 57.5 bits (139), Expect = 4e-10
Identities = 23/172 (13%), Positives = 47/172 (27%), Gaps = 38/172 (22%)
Query: 87 LLAESWRELFILGLAQ---------------YLPSLDLGELVESCKSRHVDIEEEVIRFQ 131
LL E+ + + + + + + + ++F
Sbjct: 78 LLKGGMIEMLTVRGVRRFDSSSGSWTTPTLGESSEVSINMFDQLNADVRSEQKMRFLQFF 137
Query: 132 SVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIA 191
+ +E + + I I LF S + D IA
Sbjct: 138 KIFHE--DIRSNDLVISMIMLIVLF----------------SPR---DSITDPEDRRIIA 176
Query: 192 AIQGHTQIFLNKYIHTVYPSQPTR-FCKIQLILPRLKSIPSLVLEELFFRNI 242
LN+Y+ ++Y + ++ L L+ I S LF +
Sbjct: 177 RHHEQFSALLNRYLESLYGDDAHQLNEQLPTALRMLREI-SASSGMLFLGTV 227
Score = 32.5 bits (74), Expect = 0.091
Identities = 9/85 (10%), Positives = 23/85 (27%), Gaps = 17/85 (20%)
Query: 3 LLAESWRELFILGLAQ---------------YLPSLDLGELVESCKSRHVDIEEEVIRFQ 47
LL E+ + + + + + + + ++F
Sbjct: 78 LLKGGMIEMLTVRGVRRFDSSSGSWTTPTLGESSEVSINMFDQLNADVRSEQKMRFLQFF 137
Query: 48 SVLNEFKVLNIDPYEYDYIRAITLF 72
+ +E + + I I LF
Sbjct: 138 KIFHE--DIRSNDLVISMIMLIVLF 160
>1xvp_B Orphan nuclear receptor NR1I3; CAR, RXR, citco, SRC1, DNA binding
protein; HET: F15 CID; 2.60A {Homo sapiens} SCOP:
a.123.1.1 PDB: 1xv9_B* 1xnx_A* 1xls_E*
Length = 246
Score = 57.0 bits (138), Expect = 6e-10
Identities = 25/162 (15%), Positives = 44/162 (27%), Gaps = 29/162 (17%)
Query: 86 LLLAESWRELFILGLAQYLPS-----LDLGELVESCKSRHVDIEEEVIR-FQSVLNEFKV 139
LL + E+ + L L V + E + +
Sbjct: 90 SLLKGAAVEICHIVLNTTFCLQTQNFLCGPLRYTIEDGARVGFQVEFLELLFHFHGTLRK 149
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQI 199
L + EY + A+ LF + P + I +Q +
Sbjct: 150 LQLQEPEYVLLAAMALFS-------------------PDRP--GVTQRDEIDQLQEEMAL 188
Query: 200 FLNKYIHTVY--PSQPTRFCKIQLILPRLKSIPSLVLEELFF 239
L YI P + K+ +L L+SI ++
Sbjct: 189 TLQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQH 230
Score = 37.7 bits (88), Expect = 0.002
Identities = 13/77 (16%), Positives = 22/77 (28%), Gaps = 6/77 (7%)
Query: 2 LLLAESWRELFILGLAQYLPS-----LDLGELVESCKSRHVDIEEEVIR-FQSVLNEFKV 55
LL + E+ + L L V + E + +
Sbjct: 90 SLLKGAAVEICHIVLNTTFCLQTQNFLCGPLRYTIEDGARVGFQVEFLELLFHFHGTLRK 149
Query: 56 LNIDPYEYDYIRAITLF 72
L + EY + A+ LF
Sbjct: 150 LQLQEPEYVLLAAMALF 166
>2p54_A PPAR-alpha, peroxisome proliferator-activated receptor alpha; PPAR
alpha GW735 SRC1 agonist HDLC, transcription; HET: 735;
1.79A {Homo sapiens} SCOP: a.123.1.1 PDB: 3fei_A*
1i7g_A* 3kdu_A* 3kdt_A* 2rew_A* 1kkq_A* 3g8i_A* 3et1_A*
2znn_A* 3sp6_A* 1k7l_A* 2npa_A* 2xyj_A* 2xyw_A* 2xyx_A*
2q5g_A* 3gwx_A* 3dy6_A* 1gwx_A* 3peq_A* ...
Length = 267
Score = 57.2 bits (138), Expect = 7e-10
Identities = 25/164 (15%), Positives = 45/164 (27%), Gaps = 34/164 (20%)
Query: 86 LLLAESWRELFILGLAQ----------YLPSLDLGELVESCKSRHVDIEEEVIRFQSVLN 135
LL E L+ Y E ++S + DI E F N
Sbjct: 106 TLLKYGVYEAIFAMLSSVMNKDGMLVAYGNGFITREFLKSLRKPFCDIMEPKFDFAMKFN 165
Query: 136 EFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQG 195
L +D + A + D L +V I +Q
Sbjct: 166 A---LELDDSDISLFVAAIIC---------------CGD------RPGLLNVGHIEKMQE 201
Query: 196 HTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFF 239
L ++ + +P F K+ + L+ + + + +
Sbjct: 202 GIVHVLRLHLQSNHPDDIFLFPKLLQKMADLRQLVTEHAQLVQI 245
Score = 34.5 bits (79), Expect = 0.022
Identities = 15/81 (18%), Positives = 22/81 (27%), Gaps = 13/81 (16%)
Query: 2 LLLAESWRELFILGLAQ----------YLPSLDLGELVESCKSRHVDIEEEVIRFQSVLN 51
LL E L+ Y E ++S + DI E F N
Sbjct: 106 TLLKYGVYEAIFAMLSSVMNKDGMLVAYGNGFITREFLKSLRKPFCDIMEPKFDFAMKFN 165
Query: 52 EFKVLNIDPYEYDYIRAITLF 72
L +D + A +
Sbjct: 166 A---LELDDSDISLFVAAIIC 183
>1z5x_E Ecdysone receptor ligand binding domain; ponasterone A, nuclear
receptor, ECR, USP, hormone/growth factor receptor
complex; HET: P1A; 3.07A {Bemisia tabaci}
Length = 310
Score = 57.1 bits (138), Expect = 7e-10
Identities = 32/164 (19%), Positives = 55/164 (33%), Gaps = 35/164 (21%)
Query: 86 LLLAESWRELFILGLAQ-YLPSLD---LGELV-----ESCKSRHVDIEEEVIRFQSVLNE 136
LL E+ + +A+ Y D + D E+++RF +
Sbjct: 152 ALLKACSSEVMMFRMARRYDAETDSILFATNQPYTRESYTVAGMGDTVEDLLRFCRHMCA 211
Query: 137 FKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGH 196
+ +D EY + AI +F SE P L + + IQ
Sbjct: 212 ---MKVDNAEYALLTAIVIF--------------------SERP--SLSEGWKVEKIQEI 246
Query: 197 TQIFLNKYIHTVY-PSQPTRFCKIQLILPRLKSIPSLVLEELFF 239
L Y+ P T F K+ +L L+++ ++ E F
Sbjct: 247 YIEALKAYVENRRKPYATTIFAKLLSVLTELRTLGNMNSETCFS 290
Score = 34.4 bits (79), Expect = 0.024
Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 12/80 (15%)
Query: 2 LLLAESWRELFILGLAQ-YLPSLD---LGELV-----ESCKSRHVDIEEEVIRFQSVLNE 52
LL E+ + +A+ Y D + D E+++RF +
Sbjct: 152 ALLKACSSEVMMFRMARRYDAETDSILFATNQPYTRESYTVAGMGDTVEDLLRFCRHMCA 211
Query: 53 FKVLNIDPYEYDYIRAITLF 72
+ +D EY + AI +F
Sbjct: 212 ---MKVDNAEYALLTAIVIF 228
>2nxx_E Ecdysone receptor (ECR, NRH1); hormone receptor, APO and holo
ligand binding pocket, hormone/growth factor complex;
HET: P1A; 2.75A {Tribolium castaneum}
Length = 248
Score = 54.3 bits (131), Expect = 5e-09
Identities = 30/170 (17%), Positives = 56/170 (32%), Gaps = 35/170 (20%)
Query: 86 LLLAESWRELFILGLAQ-YLPSLD----LGELV----ESCKSRHVDIEEEVIRFQSVLNE 136
LL E+ + +A+ Y D + + + E+++ F +
Sbjct: 88 ALLKACSSEVMMFRMARRYDVQTDSILFVNNQPYSRDSYNLAGMGETIEDLLHFCRTMYS 147
Query: 137 FKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGH 196
+ +D EY + AI +F SE P L + + IQ
Sbjct: 148 ---MRVDNAEYALLTAIVIF--------------------SERP--ALIEGWKVEKIQEI 182
Query: 197 TQIFLNKYIHTVYPSQP-TRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
L Y+ +P T F K+ +L L+++ + E F +
Sbjct: 183 YLEALRAYVDNRRKPKPGTIFAKLLSVLTELRTLGNQNSEMCFSLKLKNK 232
Score = 33.5 bits (77), Expect = 0.042
Identities = 14/80 (17%), Positives = 29/80 (36%), Gaps = 12/80 (15%)
Query: 2 LLLAESWRELFILGLAQ-YLPSLD----LGELV----ESCKSRHVDIEEEVIRFQSVLNE 52
LL E+ + +A+ Y D + + + E+++ F +
Sbjct: 88 ALLKACSSEVMMFRMARRYDVQTDSILFVNNQPYSRDSYNLAGMGETIEDLLHFCRTMYS 147
Query: 53 FKVLNIDPYEYDYIRAITLF 72
+ +D EY + AI +F
Sbjct: 148 ---MRVDNAEYALLTAIVIF 164
>1n83_A Nuclear receptor ROR-alpha; three-layered alpha helical sandwich,
transcription regulation, nuclear protein, DNA binding,
lipid binding protein; HET: CLR; 1.63A {Homo sapiens}
SCOP: a.123.1.1 PDB: 1s0x_A*
Length = 270
Score = 52.9 bits (127), Expect = 2e-08
Identities = 26/162 (16%), Positives = 52/162 (32%), Gaps = 33/162 (20%)
Query: 86 LLLAESWRELFILGLAQYLPSLDL-----GELV--ESCKSRHV-DIEEEVIRFQSVLNEF 137
+LL E+ + + + S + G+ + KS D V F L
Sbjct: 101 VLLKAGSLEVVFIRMCRAFDSQNNTVYFDGKYASPDVFKSLGCEDFISFVFEFGKSLCS- 159
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+++ E A L S+D S L++ + I +Q
Sbjct: 160 --MHLTEDEIALFSAFVLM---------------SAD------RSWLQEKVKIEKLQQKI 196
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFF 239
Q+ L + + + K+ + L+++ E+L
Sbjct: 197 QLALQHVLQKNHR-EDGILTKLICKVSTLRALCGRHTEKLMA 237
Score = 32.9 bits (75), Expect = 0.068
Identities = 14/79 (17%), Positives = 25/79 (31%), Gaps = 11/79 (13%)
Query: 2 LLLAESWRELFILGLAQYLPSLDL-----GELV--ESCKSRHV-DIEEEVIRFQSVLNEF 53
+LL E+ + + + S + G+ + KS D V F L
Sbjct: 101 VLLKAGSLEVVFIRMCRAFDSQNNTVYFDGKYASPDVFKSLGCEDFISFVFEFGKSLCS- 159
Query: 54 KVLNIDPYEYDYIRAITLF 72
+++ E A L
Sbjct: 160 --MHLTEDEIALFSAFVLM 176
>2r40_D Ecdysone receptor, 20-hydroxy-ecdysone receptor; nuclear receptor
ligand-binding domain, anti-parallel alpha- sandwich,
ecdysone receptor, ECR, gene regulation; HET: FLC 20E
EPH; 2.40A {Heliothis virescens} SCOP: a.123.1.1 PDB:
1r1k_D* 3ixp_D* 1r20_D*
Length = 266
Score = 51.7 bits (124), Expect = 4e-08
Identities = 29/166 (17%), Positives = 53/166 (31%), Gaps = 37/166 (22%)
Query: 86 LLLAESWRELFILGLAQ-YLPSLD---LGELV-----ESCKSRHVDIEEEVIRFQSVLNE 136
LL E+ +L +A+ Y + D K+ + E+++ F +
Sbjct: 104 TLLKACSSEVMMLRVARRYDAATDSVLFANNQAYTRDNYRKAGMAYVIEDLLHFCRCMYS 163
Query: 137 FKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGH 196
+ +D Y + AI +F S+ P L + + IQ +
Sbjct: 164 ---MMMDNVHYALLTAIVIF--------------------SDRP--GLEQPLLVEEIQRY 198
Query: 197 TQIFLNKYIHTVYPSQP---TRFCKIQLILPRLKSIPSLVLEELFF 239
L YI + P F KI IL ++++
Sbjct: 199 YLNTLRVYILNQNSASPRCAVIFGKILGILTEIRTLGMQNSNMCIS 244
Score = 32.4 bits (74), Expect = 0.13
Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 12/80 (15%)
Query: 2 LLLAESWRELFILGLAQ-YLPSLD---LGELV-----ESCKSRHVDIEEEVIRFQSVLNE 52
LL E+ +L +A+ Y + D K+ + E+++ F +
Sbjct: 104 TLLKACSSEVMMLRVARRYDAATDSVLFANNQAYTRDNYRKAGMAYVIEDLLHFCRCMYS 163
Query: 53 FKVLNIDPYEYDYIRAITLF 72
+ +D Y + AI +F
Sbjct: 164 ---MMMDNVHYALLTAIVIF 180
>1nq7_A Nuclear receptor ROR-beta; ligand-binding domain, retinoids,
retinoic acid, synthetic ligand, antagonist,
transcription; HET: ARL; 1.50A {Rattus norvegicus} SCOP:
a.123.1.1 PDB: 1k4w_A* 1n4h_A*
Length = 244
Score = 50.6 bits (121), Expect = 1e-07
Identities = 19/159 (11%), Positives = 44/159 (27%), Gaps = 27/159 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLD----LGELVESCKSRHVDIEEEVIRF-QSVLNEFKVL 140
LLL E+ ++ + + L+ + ++++ L
Sbjct: 86 LLLKSGCLEVVLVRMCRAFNPLNNTVLFEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSL 145
Query: 141 NIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIF 200
+ E + L S D + L + + +Q
Sbjct: 146 QLTEEEIALFSSAVLI---------------SPD------RAWLLEPRKVQKLQEKIYFA 184
Query: 201 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFF 239
L I + K+ +P + ++ +L E+L
Sbjct: 185 LQHVIQKNHL-DDETLAKLIAKIPTITAVCNLHGEKLQV 222
Score = 31.0 bits (70), Expect = 0.32
Identities = 8/76 (10%), Positives = 21/76 (27%), Gaps = 5/76 (6%)
Query: 2 LLLAESWRELFILGLAQYLPSLD----LGELVESCKSRHVDIEEEVIRF-QSVLNEFKVL 56
LLL E+ ++ + + L+ + ++++ L
Sbjct: 86 LLLKSGCLEVVLVRMCRAFNPLNNTVLFEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSL 145
Query: 57 NIDPYEYDYIRAITLF 72
+ E + L
Sbjct: 146 QLTEEEIALFSSAVLI 161
>2o4j_A Vitamin D3 receptor; nuclear receptor-ligand complex,
hormone/growth factor receptor complex; HET: VD4; 1.74A
{Rattus norvegicus} SCOP: a.123.1.1 PDB: 1rk3_A* 1rjk_A*
1rkh_A* 1rkg_A* 2o4r_A*
Length = 292
Score = 50.6 bits (121), Expect = 1e-07
Identities = 32/167 (19%), Positives = 55/167 (32%), Gaps = 37/167 (22%)
Query: 86 LLLAESWRELFILGLAQYLPSLD-----------LGELVESCKSRHVDIEEEVIRFQSVL 134
+LL S E+ +L Q D S +++ E +I+FQ L
Sbjct: 95 VLLKSSAIEVIMLRSNQSFTMDDMSWDCGSQDYKYDVTDVSKAGHTLELIEPLIKFQVGL 154
Query: 135 NEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQ 194
+ LN+ E+ + AI + S D ++D + AIQ
Sbjct: 155 KK---LNLHEEEHVLLMAICIV---------------SPD------RPGVQDAKLVEAIQ 190
Query: 195 GHTQIFLNKYIHTVY--PSQPTRFCKIQLILPRLKSIPSLVLEELFF 239
L YI + P + K+ L L+S+ ++
Sbjct: 191 DRLSNTLQTYIRCRHPPPGSHQLYAKMIQKLADLRSLNEEHSKQYRS 237
Score = 33.7 bits (77), Expect = 0.042
Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 14/84 (16%)
Query: 2 LLLAESWRELFILGLAQYLPSLD-----------LGELVESCKSRHVDIEEEVIRFQSVL 50
+LL S E+ +L Q D S +++ E +I+FQ L
Sbjct: 95 VLLKSSAIEVIMLRSNQSFTMDDMSWDCGSQDYKYDVTDVSKAGHTLELIEPLIKFQVGL 154
Query: 51 NEFKVLNIDPYEYDYIRAITLFKT 74
+ LN+ E+ + AI +
Sbjct: 155 KK---LNLHEEEHVLLMAICIVSP 175
>3b0t_A Vitamin D3 receptor; nuclear receptor, transcription, gene
regulation; HET: MCZ; 1.30A {Homo sapiens} PDB: 3a40_X*
1s0z_A* 1s19_A* 2ham_A* 2har_A* 2has_A* 1txi_A* 2hb8_A*
2hb7_A* 3a3z_X* 3a78_A* 3auq_A* 3aur_A* 3ax8_A* 3cs4_A*
3cs6_A* 1ie9_A* 1db1_A* 1ie8_A* 3kpz_A* ...
Length = 254
Score = 49.8 bits (119), Expect = 2e-07
Identities = 27/164 (16%), Positives = 49/164 (29%), Gaps = 31/164 (18%)
Query: 86 LLLAESWRELFILGLAQ-YLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNE-------F 137
+LL S E+ +L + + V + ++
Sbjct: 92 VLLKSSAIEVIMLRSNESFTMDDMSWTCGNQDYKYRVSDVTKAGHSLELIEPLIKFQVGL 151
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
K LN+ E+ + AI + S D ++D I AIQ
Sbjct: 152 KKLNLHEEEHVLLMAICIV---------------SPD------RPGVQDAALIEAIQDRL 190
Query: 198 QIFLNKYIHTVYPSQPTR--FCKIQLILPRLKSIPSLVLEELFF 239
L YI +P + + K+ L L+S+ ++
Sbjct: 191 SNTLQTYIRCRHPPPGSHLLYAKMIQKLADLRSLNEEHSKQYRC 234
Score = 32.1 bits (73), Expect = 0.15
Identities = 12/79 (15%), Positives = 24/79 (30%), Gaps = 8/79 (10%)
Query: 2 LLLAESWRELFILGLAQ-YLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNE-------F 53
+LL S E+ +L + + V + ++
Sbjct: 92 VLLKSSAIEVIMLRSNESFTMDDMSWTCGNQDYKYRVSDVTKAGHSLELIEPLIKFQVGL 151
Query: 54 KVLNIDPYEYDYIRAITLF 72
K LN+ E+ + AI +
Sbjct: 152 KKLNLHEEEHVLLMAICIV 170
>3gyt_A Nuclear hormone receptor of the steroid/thyroid hormone receptors
superfamily; nuclear receptor, ligand binding domain,
dafachronic acid, nematode, DNA-binding, metal-binding,
nucleus, receptor; HET: DL4; 2.40A {Strongyloides
stercoralis} PDB: 3gyu_A*
Length = 244
Score = 48.0 bits (114), Expect = 7e-07
Identities = 21/165 (12%), Positives = 49/165 (29%), Gaps = 31/165 (18%)
Query: 87 LLAESWRELFILGLAQ-YLPSLDLGEL---------VESCKSRHVDIEEEVIR-FQSVLN 135
LL E+ + + + + DI++ + F N
Sbjct: 78 LLKGGMIEMLTIRGVTVFNADKGVWQTPVDGHSQISFNMFDKLRPDIKDTQKKGFLHFFN 137
Query: 136 EFKV-LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQ 194
+ + D I + LF S +G + D + +
Sbjct: 138 LLHSDVRKNDLAIDIIVLMVLF--------------DSKREGLVSQQ----DKETVEKLH 179
Query: 195 GHTQIFLNKYIHTVYPSQ-PTRFCKIQLILPRLKSIPSLVLEELF 238
+ + L++Y+++++ + RF I L L+ + +
Sbjct: 180 RNYESLLHRYLYSIHKEEAEQRFASIPKALVALRKVAENAVTLFL 224
Score = 29.9 bits (67), Expect = 0.70
Identities = 15/114 (13%), Positives = 29/114 (25%), Gaps = 13/114 (11%)
Query: 3 LLAESWRELFILGLAQ-YLPSLDLGEL---------VESCKSRHVDIEEEVIR-FQSVLN 51
LL E+ + + + + DI++ + F N
Sbjct: 78 LLKGGMIEMLTIRGVTVFNADKGVWQTPVDGHSQISFNMFDKLRPDIKDTQKKGFLHFFN 137
Query: 52 EFKV-LNIDPYEYDYIRAITLFKTAFTSRRELAGHLLLAESWRELFILGLAQYL 104
+ + D I + LF + E + L +YL
Sbjct: 138 LLHSDVRKNDLAIDIIVLMVLF-DSKREGLVSQQDKETVEKLHRNYESLLHRYL 190
>3l0l_A Nuclear receptor ROR-gamma; nuclear receptor, rorgamma, alternative
splicing, DNA-bindin binding, nucleus, receptor,
zinc-finger, acetylation, activator; HET: HC3; 1.74A
{Homo sapiens} PDB: 3b0w_A* 3kyt_A* 3l0j_A*
Length = 248
Score = 44.9 bits (106), Expect = 8e-06
Identities = 17/159 (10%), Positives = 48/159 (30%), Gaps = 29/159 (18%)
Query: 86 LLLAESWRELFILGLAQYLPSLDL-----GELVESCKSRHVDIEEEVIRFQSVLNEFKVL 140
+LL E+ ++ + + + + G+ R + E + + L
Sbjct: 92 VLLKAGAMEVVLVRMCRAYNADNRTVFFEGKYGGMELFRALGCSELISSIFDFSHSLSAL 151
Query: 141 NIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIF 200
+ E A+ L ++ L++ + +Q + ++
Sbjct: 152 HFSEDEIALYTALVLI---------------NAH------RPGLQEKRKVEQLQYNLELA 190
Query: 201 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFF 239
+ ++ + +L+S+ S +E L
Sbjct: 191 FHHHLCKTHRQSILAKL---PPKGKLRSLCSQHVERLQI 226
Score = 32.6 bits (74), Expect = 0.10
Identities = 10/76 (13%), Positives = 24/76 (31%), Gaps = 5/76 (6%)
Query: 2 LLLAESWRELFILGLAQYLPSLDL-----GELVESCKSRHVDIEEEVIRFQSVLNEFKVL 56
+LL E+ ++ + + + + G+ R + E + + L
Sbjct: 92 VLLKAGAMEVVLVRMCRAYNADNRTVFFEGKYGGMELFRALGCSELISSIFDFSHSLSAL 151
Query: 57 NIDPYEYDYIRAITLF 72
+ E A+ L
Sbjct: 152 HFSEDEIALYTALVLI 167
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.3 bits (99), Expect = 1e-04
Identities = 39/215 (18%), Positives = 68/215 (31%), Gaps = 54/215 (25%)
Query: 53 FKVLNIDPYEYDYIR-AITLFKTAFTSRRELAGHLLLAESWRELFILGLAQYLP--SLDL 109
FK +N Y + L T FT E + ++ S L
Sbjct: 1707 FKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHS--L 1764
Query: 110 GE---LVESCKSRHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEV-K 165
GE L + +V+ +S++ +V+ + R +T+ V DE+ +
Sbjct: 1765 GEYAALA--SLA-------DVMSIESLV---EVV--------FYRGMTMQVAVPRDELGR 1804
Query: 166 DNRSSSSSDDGSEHPESCLRDVIAIAA-IQGHTQIFL---NKY---------------IH 206
N + + G + + + T + N Y +
Sbjct: 1805 SNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVN-YNVENQQYVAAGDLRALD 1863
Query: 207 TVYPSQPTRFCKIQLI-LPRLKSIPSL--VLEELF 238
TV + F K+Q I + L+ SL V LF
Sbjct: 1864 TV--TNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
Score = 34.6 bits (79), Expect = 0.038
Identities = 40/255 (15%), Positives = 75/255 (29%), Gaps = 100/255 (39%)
Query: 54 KVLNIDPYE-YDYIRAITLFKTAFTSRRELAGHLLLAESWRE-----------LFILGLA 101
K+L P E Y++ T + +A +SW LF +G+
Sbjct: 254 KLLGFTPGELRSYLKGATGHSQGLVTAVAIA----ETDSWESFFVSVRKAITVLFFIGVR 309
Query: 102 --QYLP-----------SLDLGELVES----CKS-RHVDIEEEVIRFQSVLNEFKVLNID 143
+ P SL+ E V S + +++ V + S L K +
Sbjct: 310 CYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV--- 366
Query: 144 PYEYDYIRAITLFKT----VIEDEVKDNRSSSSSDDGSEHPES------CLRDVIAIAAI 193
I+L V+ S P+S LR A + +
Sbjct: 367 --------EISLVNGAKNLVV----------------SGPPQSLYGLNLTLRKAKAPSGL 402
Query: 194 -QG---HTQ---IFLNKYI------HTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 240
Q ++ F N+++ H+ L L+ ++L
Sbjct: 403 DQSRIPFSERKLKFSNRFLPVASPFHSHL----------------LVPASDLINKDLVKN 446
Query: 241 NIIGHNTTIKKTIWH 255
N+ + I+ ++
Sbjct: 447 NVSFNAKDIQIPVYD 461
Score = 27.7 bits (61), Expect = 4.8
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 25/70 (35%)
Query: 18 QYLPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTAFT 77
QY+ + G+L ++ +VLN K+ ID I L K+
Sbjct: 1852 QYVAA---GDLR--------ALDT----VTNVLNFIKLQKID--------IIELQKS--L 1886
Query: 78 SRRELAGHLL 87
S E+ GHL
Sbjct: 1887 SLEEVEGHLF 1896
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.5 bits (91), Expect = 0.001
Identities = 37/212 (17%), Positives = 63/212 (29%), Gaps = 54/212 (25%)
Query: 4 LAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIEEEV-IRFQSVLNEFKVLNIDPYE 62
L E + + + L+L +E+ + H I + I ++ +D Y
Sbjct: 416 LVEKQPKESTISI--PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473
Query: 63 YDYIRAITLFKTAFTSRRELAGHLLLAE------SWRELFILGLAQYLPSLDLGELVESC 116
Y +I HL E +R +F LD L
Sbjct: 474 YSHI----------------GHHLKNIEHPERMTLFRMVF----------LDFRFL--EQ 505
Query: 117 KSRHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDG 176
K RH S+LN + L Y+ YI + + + D
Sbjct: 506 KIRHDSTAWNAS--GSILNTLQQLKF--YK-PYICDNDPKYERLVNAILDFLPK------ 554
Query: 177 SEHPESCLR----DVIAIAAIQGHTQIFLNKY 204
E+ + D++ IA + IF +
Sbjct: 555 --IEENLICSKYTDLLRIALMAEDEAIFEEAH 584
Score = 29.4 bits (65), Expect = 1.2
Identities = 43/318 (13%), Positives = 83/318 (26%), Gaps = 100/318 (31%)
Query: 4 LAESWRELFI---LGLAQYLPSLD-LGELVESCKSRHVDIEEEVIRFQSVLNEFKVLNID 59
L + + Y+ D L + +V + ++ + L L +
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL-----LELR 148
Query: 60 PYEYDYIRAITLF------KTAFTSRRELAGHLLLAES----------W-------RELF 96
P + + + KT +A + L+ W
Sbjct: 149 PAKN-----VLIDGVLGSGKTW------VALDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197
Query: 97 ILGLAQYL------PSLDLGELVESCKSRHVDIEEEVIRFQS------------------ 132
+L + Q L + + K R I+ E+ R
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257
Query: 133 VLNEF----KVL----------NIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSE 178
N F K+L + +I T+ DEVK +
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 179 HP-ESCLRDVIAIAAI-----------QGHTQIFLNKYIHTVYPS----QPT--RFCKIQ 220
P E + ++ I + +K + S +P R +
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 221 L-ILPRLKSIPSLVLEEL 237
L + P IP+++L +
Sbjct: 378 LSVFPPSAHIPTILLSLI 395
Score = 27.9 bits (61), Expect = 4.6
Identities = 26/164 (15%), Positives = 49/164 (29%), Gaps = 61/164 (37%)
Query: 120 HVDIE--EEVIRFQSVLNEFK---VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSD 174
H+D E E +++ +L+ F+ V N D + ++D K S D
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKD-------------VQDMPKSILSKEEID 52
Query: 175 D--GSEHPESCLRDVIAIAAIQGHTQI-------------FLNKYIHTVY--PSQPTR-- 215
S+ S + + + FL I T PS TR
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 216 ------------------------FCKIQLILPRLKSIPSLVLE 235
+ K++ L L+ +++++
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding,
metal-binding, zinc-finger, translation; HET: TM2 PAR;
2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E*
1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B
1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B*
1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Length = 256
Score = 29.1 bits (66), Expect = 1.4
Identities = 11/49 (22%), Positives = 15/49 (30%), Gaps = 8/49 (16%)
Query: 141 NIDPYEYDY--------IRAITLFKTVIEDEVKDNRSSSSSDDGSEHPE 181
+ DP DY IR+I L + D + R S
Sbjct: 191 DSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQARGGVVEPSPSYALV 239
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 231
Score = 28.6 bits (65), Expect = 1.5
Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 22/72 (30%)
Query: 121 VDIEEEVIRFQSVLNEFKVLNI----------DPYEYDY--------IRAITLFKTVIED 162
VD +EE L E L I +P D I +I L T +
Sbjct: 164 VDQQEEYT----ALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVF 219
Query: 163 EVKDNRSSSSSD 174
+ + RSS +
Sbjct: 220 AICEGRSSYIRN 231
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP;
2.90A {Saccharomyces cerevisiae}
Length = 766
Score = 28.8 bits (65), Expect = 2.1
Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 7/74 (9%)
Query: 117 KSRHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDG 176
K + E + K + D+ RA++L T + + + + +S+D
Sbjct: 332 KIVRKPLME-------SVKLTKAVAEAIQAKDFKRAMSLRDTEFIEHLNNFMAINSADHN 384
Query: 177 SEHPESCLRDVIAI 190
R IAI
Sbjct: 385 EPKLPKDKRLKIAI 398
>3r8n_B 30S ribosomal protein S2; protein biosynthesis, RNA, tRNA, transfer
RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia
coli} PDB: 2ykr_B 3fih_B* 2wwl_B 3oar_B 3oaq_B 3ofb_B
3ofa_B 3ofp_B 3ofx_B 3ofy_B 3ofo_B 3r8o_B 4a2i_B 3i1m_B
1vs7_B* 3e1a_B 3e1c_B 1vs5_B 3i1o_B 3i1q_B ...
Length = 218
Score = 27.1 bits (61), Expect = 5.5
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 8/37 (21%)
Query: 141 NIDPYEYDY--------IRAITLFKTVIEDEVKDNRS 169
N DP D+ IRA+TL+ + V++ RS
Sbjct: 182 NSDPDGVDFVIPGNDDAIRAVTLYLGAVAATVREGRS 218
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.407
Gapped
Lambda K H
0.267 0.0589 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,156,721
Number of extensions: 246569
Number of successful extensions: 671
Number of sequences better than 10.0: 1
Number of HSP's gapped: 494
Number of HSP's successfully gapped: 125
Length of query: 261
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 169
Effective length of database: 4,133,061
Effective search space: 698487309
Effective search space used: 698487309
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.7 bits)