RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16761
(261 letters)
>d1g2na_ a.123.1.1 (A:) Ultraspiracle protein, usp {Heliothis
virescens [TaxId: 7102]}
Length = 256
Score = 74.0 bits (181), Expect = 3e-16
Identities = 36/200 (18%), Positives = 65/200 (32%), Gaps = 47/200 (23%)
Query: 85 HLLLAESWRELFILGLAQYLPSLDLGELVESCKS------------------------RH 120
LL+ SW EL + +A E +
Sbjct: 77 ILLIKGSWNELLLFAIAWRSMEFLTEERDGVDGTGNRTTSPPQLMCLMPGMTLHRNSALQ 136
Query: 121 VDIEEEVIR-FQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEH 179
+ + R + + + L +D EY ++AI L
Sbjct: 137 AGVGQIFDRVLSELSLKMRTLRVDQAEYVALKAIILLN---------------------P 175
Query: 180 PESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFF 239
L++ + ++ + L++Y S+ RF + L LP L+SI E LFF
Sbjct: 176 DVKGLKNRQEVEVLREKMFLCLDEYCRRSRSSEEGRFAALLLRLPALRSISLKSFEHLFF 235
Query: 240 RNIIGHNTTIKKTIWHMYKN 259
+++ +T+I I +N
Sbjct: 236 FHLVA-DTSIAGYIRDALRN 254
Score = 32.8 bits (74), Expect = 0.027
Identities = 16/106 (15%), Positives = 29/106 (27%), Gaps = 25/106 (23%)
Query: 1 HLLLAESWRELFILGLAQYLPSLDLGELVESCKS------------------------RH 36
LL+ SW EL + +A E +
Sbjct: 77 ILLIKGSWNELLLFAIAWRSMEFLTEERDGVDGTGNRTTSPPQLMCLMPGMTLHRNSALQ 136
Query: 37 VDIEEEVIR-FQSVLNEFKVLNIDPYEYDYIRAITLFKTAFTSRRE 81
+ + R + + + L +D EY ++AI L +
Sbjct: 137 AGVGQIFDRVLSELSLKMRTLRVDQAEYVALKAIILLNPDVKGLKN 182
>d2fvja1 a.123.1.1 (A:207-477) Peroxisome proliferator activated
receptor gamma, PPAR-gamma {Human (Homo sapiens) [TaxId:
9606]}
Length = 271
Score = 73.9 bits (181), Expect = 3e-16
Identities = 27/192 (14%), Positives = 54/192 (28%), Gaps = 28/192 (14%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGEL-------VESCKSRHVDIEEEV 127
F + LL E+ LA + + E KS + +
Sbjct: 99 GFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTREFLKSLRKPFGDFM 158
Query: 128 IRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDV 187
+F L +D + A+ + L +V
Sbjct: 159 EPKFEFAVKFNALELDDSDLAIFIAVIILS---------------------GDRPGLLNV 197
Query: 188 IAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNT 247
I IQ + L + +P F K+ + L+ I + ++ L +
Sbjct: 198 KPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDM 257
Query: 248 TIKKTIWHMYKN 259
++ + +YK+
Sbjct: 258 SLHPLLQEIYKD 269
Score = 40.0 bits (93), Expect = 1e-04
Identities = 15/111 (13%), Positives = 29/111 (26%), Gaps = 11/111 (9%)
Query: 1 HLLLAESWRELFILGLAQYLPSLDLGEL-------VESCKSRHVDIEEEVIRFQSVLNEF 53
LL E+ LA + + E KS + + +F
Sbjct: 109 VTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKF 168
Query: 54 KVLNIDPYEYDYIRAITLFKTAFTSRRELAGHLLLAESWRELFILGLAQYL 104
L +D + A+ + + E ++ + L L
Sbjct: 169 NALELDDSDLAIFIAVIILSGDRPGLLNVK----PIEDIQDNLLQALELQL 215
>d1pk5a_ a.123.1.1 (A:) Orphan nuclear receptor NR5a2 (LRH-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 242
Score = 72.8 bits (178), Expect = 6e-16
Identities = 29/170 (17%), Positives = 55/170 (32%), Gaps = 32/170 (18%)
Query: 86 LLLAESWRELFILGLAQY----------LPSLDLGELVESCKSRHVDIEEEVIR-FQSVL 134
LL W EL IL + S ++ Q ++
Sbjct: 78 KLLQNCWSELLILDHIYRQVAHGKEGTIFLVTGEHVDYSTIISHTEVAFNNLLSLAQELV 137
Query: 135 NEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQ 194
+ L D E+ ++ + LF + L ++ + +Q
Sbjct: 138 VRLRSLQFDQREFVCLKFLVLFSS---------------------DVKNLENLQLVEGVQ 176
Query: 195 GHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP Q +F ++ L LP L++I + L+++++ G
Sbjct: 177 EQVNAALLDYTVCNYPQQTEKFGQLLLRLPELRAISKQAEDYLYYKHVNG 226
Score = 36.9 bits (85), Expect = 0.001
Identities = 20/114 (17%), Positives = 33/114 (28%), Gaps = 15/114 (13%)
Query: 2 LLLAESWRELFILGLAQY----------LPSLDLGELVESCKSRHVDIEEEVIR-FQSVL 50
LL W EL IL + S ++ Q ++
Sbjct: 78 KLLQNCWSELLILDHIYRQVAHGKEGTIFLVTGEHVDYSTIISHTEVAFNNLLSLAQELV 137
Query: 51 NEFKVLNIDPYEYDYIRAITLFKTAFTSRRELAGHLLLAESWRELFILGLAQYL 104
+ L D E+ ++ + LF + + L L E +E L Y
Sbjct: 138 VRLRSLQFDQREFVCLKFLVLFSSDVKNLENLQ----LVEGVQEQVNAALLDYT 187
>d1pzla_ a.123.1.1 (A:) Hepatocyte nuclear factor 4-alpha {Human
(Homo sapiens) [TaxId: 9606]}
Length = 233
Score = 70.9 bits (173), Expect = 3e-15
Identities = 36/166 (21%), Positives = 60/166 (36%), Gaps = 28/166 (16%)
Query: 86 LLLAESWRELFILGLAQYLPSLDL------GELVESCKSRHVDIEEEVIR-FQSVLNEFK 138
LL E +LG + +V ++ IR ++ F+
Sbjct: 73 ALLRAHAGEHLLLGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQ 132
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
L ID EY Y++AI F + L D I ++ Q
Sbjct: 133 ELQIDDNEYAYLKAIIFFDPDAKG---------------------LSDPGKIKRLRSQVQ 171
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
+ L YI+ RF ++ L+LP L+SI ++E++ F + G
Sbjct: 172 VSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKLFG 217
Score = 37.7 bits (87), Expect = 6e-04
Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 7/80 (8%)
Query: 2 LLLAESWRELFILGLAQYLPSLDL------GELVESCKSRHVDIEEEVIR-FQSVLNEFK 54
LL E +LG + +V ++ IR ++ F+
Sbjct: 73 ALLRAHAGEHLLLGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQ 132
Query: 55 VLNIDPYEYDYIRAITLFKT 74
L ID EY Y++AI F
Sbjct: 133 ELQIDDNEYAYLKAIIFFDP 152
>d2e2ra1 a.123.1.1 (A:234-456) Orphan nuclear receptor ERR3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 223
Score = 70.1 bits (171), Expect = 4e-15
Identities = 27/167 (16%), Positives = 61/167 (36%), Gaps = 27/167 (16%)
Query: 85 HLLLAESWRELFILGLAQYLPSLDL------GELVESCKSRHVDIEEEVIRFQSVLNEFK 138
LL +W E+ ILG+ S + +++ +S+ + + ++ ++K
Sbjct: 65 MSLLQSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAILQLVKKYK 124
Query: 139 VLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQ 198
+ ++ E+ ++AI L + + DV A+ +Q
Sbjct: 125 SMKLEKEEFVTLKAIALANSDS---------------------MHIEDVEAVQKLQDVLH 163
Query: 199 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
L Y + P R K+ + LP L+ + ++ + + G
Sbjct: 164 EALQDYEAGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEGK 210
Score = 36.2 bits (83), Expect = 0.002
Identities = 14/78 (17%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 1 HLLLAESWRELFILGLAQYLPSLDL------GELVESCKSRHVDIEEEVIRFQSVLNEFK 54
LL +W E+ ILG+ S + +++ +S+ + + ++ ++K
Sbjct: 65 MSLLQSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAILQLVKKYK 124
Query: 55 VLNIDPYEYDYIRAITLF 72
+ ++ E+ ++AI L
Sbjct: 125 SMKLEKEEFVTLKAIALA 142
>d2p54a1 a.123.1.1 (A:202-468) Peroxisome proliferator activated
receptor alpha, PPAR-alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 267
Score = 70.4 bits (172), Expect = 5e-15
Identities = 22/192 (11%), Positives = 51/192 (26%), Gaps = 28/192 (14%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELV-------ESCKSRHVDIEEEV 127
F + LL E L+ + + E KS + +
Sbjct: 95 GFANLDLNDQVTLLKYGVYEAIFAMLSSVMNKDGMLVAYGNGFITREFLKSLRKPFCDIM 154
Query: 128 IRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDV 187
+F L +D + A + L +V
Sbjct: 155 EPKFDFAMKFNALELDDSDISLFVAAIICC---------------------GDRPGLLNV 193
Query: 188 IAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNT 247
I +Q L ++ + +P F K+ + L+ + + + + +
Sbjct: 194 GHIEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMADLRQLVTEHAQLVQIIKKTESDA 253
Query: 248 TIKKTIWHMYKN 259
+ + +Y++
Sbjct: 254 ALHPLLQEIYRD 265
Score = 37.7 bits (87), Expect = 8e-04
Identities = 11/80 (13%), Positives = 20/80 (25%), Gaps = 7/80 (8%)
Query: 1 HLLLAESWRELFILGLAQYLPSLDLGELV-------ESCKSRHVDIEEEVIRFQSVLNEF 53
LL E L+ + + E KS + + +F
Sbjct: 105 VTLLKYGVYEAIFAMLSSVMNKDGMLVAYGNGFITREFLKSLRKPFCDIMEPKFDFAMKF 164
Query: 54 KVLNIDPYEYDYIRAITLFK 73
L +D + A +
Sbjct: 165 NALELDDSDISLFVAAIICC 184
>d1xpca_ a.123.1.1 (A:) Estrogen receptor alpha {Human (Homo
sapiens) [TaxId: 9606]}
Length = 245
Score = 69.7 bits (170), Expect = 7e-15
Identities = 24/170 (14%), Positives = 52/170 (30%), Gaps = 23/170 (13%)
Query: 85 HLLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD-------IEEEVIRFQSVLNEF 137
LL +W E+ ++GL L + + E + + F
Sbjct: 70 VHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRF 129
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+++N+ E+ +++I L +S L + I +
Sbjct: 130 RMMNLQGEEFVCLKSIILL-------------NSGVYTFLSSTLKSLEEKDHIHRVLDKI 176
Query: 198 QIFLNKYI---HTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L + Q R ++ LIL ++ + + +E L+
Sbjct: 177 TDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCKN 226
Score = 36.6 bits (84), Expect = 0.002
Identities = 13/81 (16%), Positives = 30/81 (37%), Gaps = 7/81 (8%)
Query: 1 HLLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD-------IEEEVIRFQSVLNEF 53
LL +W E+ ++GL L + + E + + F
Sbjct: 70 VHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRF 129
Query: 54 KVLNIDPYEYDYIRAITLFKT 74
+++N+ E+ +++I L +
Sbjct: 130 RMMNLQGEEFVCLKSIILLNS 150
>d2b50b1 a.123.1.1 (B:211-475) Peroxisome proliferator-activated
receptor delta, PPAR-DELTA {Human (Homo sapiens) [TaxId:
9606]}
Length = 265
Score = 68.8 bits (168), Expect = 2e-14
Identities = 27/193 (13%), Positives = 55/193 (28%), Gaps = 30/193 (15%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGEL-------VESCKSRHVDIEEEV 127
+F+S LL E LA + L E +S + +
Sbjct: 95 SFSSLFLNDQVTLLKYGVHEAIFAMLASIVNKDGLLVANGSGFVTREFLRSLRKPFSDII 154
Query: 128 IRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDV 187
+F L +D + A + L +V
Sbjct: 155 EPKFEFAVKFNALELDDSDLALFIAAIILC---------------------GDRPGLMNV 193
Query: 188 IAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELF-FRNIIGHN 246
+ AIQ L ++ +P F K+ + L+ + + + + +
Sbjct: 194 PRVEAIQDTILRALEFHLQANHPDAQQLFPKLLQKMADLRQLVTEHAQMMQRIKKTET-E 252
Query: 247 TTIKKTIWHMYKN 259
T++ + +YK+
Sbjct: 253 TSLHPLLQEIYKD 265
Score = 39.2 bits (91), Expect = 3e-04
Identities = 12/79 (15%), Positives = 20/79 (25%), Gaps = 7/79 (8%)
Query: 1 HLLLAESWRELFILGLAQYLPSLDLGEL-------VESCKSRHVDIEEEVIRFQSVLNEF 53
LL E LA + L E +S + + +F
Sbjct: 105 VTLLKYGVHEAIFAMLASIVNKDGLLVANGSGFVTREFLRSLRKPFSDIIEPKFEFAVKF 164
Query: 54 KVLNIDPYEYDYIRAITLF 72
L +D + A +
Sbjct: 165 NALELDDSDLALFIAAIIL 183
>d3d24a1 a.123.1.1 (A:194-420) Steroid hormone receptor ERR1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 227
Score = 67.0 bits (163), Expect = 6e-14
Identities = 27/169 (15%), Positives = 56/169 (33%), Gaps = 31/169 (18%)
Query: 86 LLLAESWRELFILGLAQYLPSLDL------GELVESCKSRHVDIEEEVIRFQSVLNEFKV 139
+L W E+ +LG+AQ L +++ +R + E ++ +
Sbjct: 66 SVLQSVWMEVLVLGVAQRSLPLQDELAFAEDLVLDEEGARAAGLGELGAALLQLVRRLQA 125
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQI 199
L ++ EY ++A+ L + D A+ ++
Sbjct: 126 LRLEREEYVLLKALALAN---------------------SDSVHIEDAEAVEQLREALHE 164
Query: 200 FLNKYIHTVY----PSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L +Y ++ R ++ L LP L+ VL + + G
Sbjct: 165 ALLEYEAGRAGPGGGAERRRAGRLLLTLPLLRQTAGKVLAHFYGVKLEG 213
Score = 40.4 bits (94), Expect = 8e-05
Identities = 15/86 (17%), Positives = 34/86 (39%), Gaps = 6/86 (6%)
Query: 2 LLLAESWRELFILGLAQYLPSLDL------GELVESCKSRHVDIEEEVIRFQSVLNEFKV 55
+L W E+ +LG+AQ L +++ +R + E ++ +
Sbjct: 66 SVLQSVWMEVLVLGVAQRSLPLQDELAFAEDLVLDEEGARAAGLGELGAALLQLVRRLQA 125
Query: 56 LNIDPYEYDYIRAITLFKTAFTSRRE 81
L ++ EY ++A+ L + +
Sbjct: 126 LRLEREEYVLLKALALANSDSVHIED 151
>d1fcya_ a.123.1.1 (A:) Retinoic acid receptor gamma (RAR-gamma)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 236
Score = 67.0 bits (163), Expect = 7e-14
Identities = 22/166 (13%), Positives = 45/166 (27%), Gaps = 27/166 (16%)
Query: 86 LLLAESWRELFILGLAQY------LPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKV 139
LL + ++ +L + + G + + + + +
Sbjct: 80 TLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLP 139
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQI 199
L +D E + AI L L + + +Q
Sbjct: 140 LEMDDTETGLLSAICLIC---------------------GDRMDLEEPEKVDKLQEPLLE 178
Query: 200 FLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
L Y PSQP F ++ + + L+ I + E +
Sbjct: 179 ALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKMEIP 224
Score = 34.6 bits (79), Expect = 0.006
Identities = 10/77 (12%), Positives = 23/77 (29%), Gaps = 6/77 (7%)
Query: 2 LLLAESWRELFILGLAQY------LPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKV 55
LL + ++ +L + + G + + + + +
Sbjct: 80 TLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLP 139
Query: 56 LNIDPYEYDYIRAITLF 72
L +D E + AI L
Sbjct: 140 LEMDDTETGLLSAICLI 156
>d1osha_ a.123.1.1 (A:) Bile acid receptor FXR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 231
Score = 66.2 bits (161), Expect = 1e-13
Identities = 30/158 (18%), Positives = 45/158 (28%), Gaps = 26/158 (16%)
Query: 86 LLLAESWRELFILGLAQY----LPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLN 141
LL S E L A+ LPS L E ++ + E + S L
Sbjct: 78 ALLKGSAVEAMFLRSAEIFNKKLPSGHSDLLEERIRNSGISDEY-ITPMFSFYKSIGELK 136
Query: 142 IDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFL 201
+ EY + AI + ++D A+ +Q L
Sbjct: 137 MTQEEYALLTAIVILS---------------------PDRQYIKDREAVEKLQEPLLDVL 175
Query: 202 NKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFF 239
K P P F + L L++ E L
Sbjct: 176 QKLCKIHQPENPQHFACLLGRLTELRTFNHHHAEMLMS 213
Score = 36.2 bits (83), Expect = 0.002
Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 5/84 (5%)
Query: 2 LLLAESWRELFILGLAQY----LPSLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLN 57
LL S E L A+ LPS L E ++ + E + S L
Sbjct: 78 ALLKGSAVEAMFLRSAEIFNKKLPSGHSDLLEERIRNSGISD-EYITPMFSFYKSIGELK 136
Query: 58 IDPYEYDYIRAITLFKTAFTSRRE 81
+ EY + AI + ++
Sbjct: 137 MTQEEYALLTAIVILSPDRQYIKD 160
>d1hg4a_ a.123.1.1 (A:) Ultraspiracle protein, usp {Drosophila
melanogaster [TaxId: 7227]}
Length = 265
Score = 65.9 bits (160), Expect = 2e-13
Identities = 30/193 (15%), Positives = 51/193 (26%), Gaps = 55/193 (28%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKS--------------------------- 118
+LL +W EL I +A
Sbjct: 75 ILLKAAWIELLIANVAWCSIVSLDDGGAGGGGGGLGHDGSFERRSPGLQPQQLFLNQSFS 134
Query: 119 -------RHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSS 171
+ + + K LN+D E ++AI L+ I
Sbjct: 135 YHRNSAIKAGVSAIFDRILSELSVKMKRLNLDRRELSCLKAIILYNPDI----------- 183
Query: 172 SSDDGSEHPESCLRDVIAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPS 231
++ I + L+++ +P RF ++ L LP L+SI
Sbjct: 184 ----------RGIKSRAEIEMCREKVYACLDEHCRLEHPGDDGRFAQLLLRLPALRSISL 233
Query: 232 LVLEELFFRNIIG 244
+ LF I
Sbjct: 234 KCQDHLFLFRITS 246
>d1ovla_ a.123.1.1 (A:) Orphan nuclear receptor NURR1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 236
Score = 65.4 bits (159), Expect = 2e-13
Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 29/167 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLD-----LGELVESCKSRHVDIEEEVIRFQSVLNEFKVL 140
LL ++ ELF+L LA ++ +V E + + + +
Sbjct: 75 LLFESAFLELFVLRLAYRSNPVEGKLIFCNGVVLHRLQCVRGFGEWIDSIVEFSSNLQNM 134
Query: 141 NIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIF 200
NID + I A+ + L++ + +Q
Sbjct: 135 NIDISAFSCIAALAMV----------------------TERHGLKEPKRVEELQNKIVNC 172
Query: 201 LNKYIHTVYP--SQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
L ++ ++P K+ LP L+++ + L+ +F+ +
Sbjct: 173 LKDHVTFNNGGLNRPNYLSKLLGKLPELRTLCTQGLQRIFYLKLEDL 219
Score = 36.1 bits (83), Expect = 0.002
Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 5/79 (6%)
Query: 2 LLLAESWRELFILGLAQYLPSLD-----LGELVESCKSRHVDIEEEVIRFQSVLNEFKVL 56
LL ++ ELF+L LA ++ +V E + + + +
Sbjct: 75 LLFESAFLELFVLRLAYRSNPVEGKLIFCNGVVLHRLQCVRGFGEWIDSIVEFSSNLQNM 134
Query: 57 NIDPYEYDYIRAITLFKTA 75
NID + I A+ +
Sbjct: 135 NIDISAFSCIAALAMVTER 153
>d1pdua_ a.123.1.1 (A:) Nuclear hormone receptor HR38 {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 230
Score = 64.3 bits (156), Expect = 6e-13
Identities = 29/168 (17%), Positives = 49/168 (29%), Gaps = 29/168 (17%)
Query: 85 HLLLAESWRELFILGLAQYLPSLD-----LGELVESCKSRHVDIEEEVIRFQSVLNEFKV 139
LL + ELF+L LA D V E +
Sbjct: 71 ELLFQSASLELFVLRLAYRARIDDTKLIFCNGTVLHRTQCLRSFGEWLNDIMEFSRSLHN 130
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQI 199
L ID + + A+TL LR+ + +Q
Sbjct: 131 LEIDISAFACLCALTLI----------------------TERHGLREPKKVEQLQMKIIG 168
Query: 200 FLNKYIHTVYPSQ--PTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
L ++ +Q F ++ LP L+S+ L+ +F+ +
Sbjct: 169 SLRDHVTYNAEAQKKQHYFSRLLGKLPELRSLSVQGLQRIFYLKLEDL 216
Score = 35.4 bits (81), Expect = 0.004
Identities = 17/79 (21%), Positives = 23/79 (29%), Gaps = 5/79 (6%)
Query: 1 HLLLAESWRELFILGLAQYLPSLD-----LGELVESCKSRHVDIEEEVIRFQSVLNEFKV 55
LL + ELF+L LA D V E +
Sbjct: 71 ELLFQSASLELFVLRLAYRARIDDTKLIFCNGTVLHRTQCLRSFGEWLNDIMEFSRSLHN 130
Query: 56 LNIDPYEYDYIRAITLFKT 74
L ID + + A+TL
Sbjct: 131 LEIDISAFACLCALTLITE 149
>d2p1ta1 a.123.1.1 (A:229-458) Retinoid-X receptor alpha (RXR-alpha)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 230
Score = 63.9 bits (155), Expect = 6e-13
Identities = 40/165 (24%), Positives = 61/165 (36%), Gaps = 28/165 (16%)
Query: 87 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD-------IEEEVIRFQSVLNEFKV 139
LL W EL I + ++ G L+ + H + ++++ +
Sbjct: 72 LLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRD 131
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQI 199
+ +D E +RAI LF L + + A++
Sbjct: 132 MQMDKTELGCLRAIVLFN---------------------PDSKGLSNPAEVEALREKVYA 170
Query: 200 FLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 244
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 171 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 215
Score = 31.2 bits (70), Expect = 0.091
Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 7/86 (8%)
Query: 3 LLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD-------IEEEVIRFQSVLNEFKV 55
LL W EL I + ++ G L+ + H + ++++ +
Sbjct: 72 LLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRD 131
Query: 56 LNIDPYEYDYIRAITLFKTAFTSRRE 81
+ +D E +RAI LF
Sbjct: 132 MQMDKTELGCLRAIVLFNPDSKGLSN 157
>d2j7ya1 a.123.1.1 (A:217-452) Estrogen receptor beta {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 236
Score = 63.6 bits (154), Expect = 1e-12
Identities = 26/178 (14%), Positives = 51/178 (28%), Gaps = 18/178 (10%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELV-------ESCKSRHVDIEEEV 127
F L LL W E+ ++GL + I E
Sbjct: 57 GFVELSLLDQVRLLESCWMEVLMVGLMWRSIDHPGKLIFAPDLVLDRDEGKCVEGILEIF 116
Query: 128 IRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDV 187
+ + F+ L + EY ++A+ L + S++ + S L V
Sbjct: 117 DMLLATTSRFRELKLQHKEYLCVKAMILLN----SSMYPLASANQEAESSRKLTHLLNAV 172
Query: 188 IAIAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
+++ Q R + ++L ++ I + +E L
Sbjct: 173 T-------DALVWVIAKSGISSQQQSVRLANLLMLLSHVRHISNKGMEHLLSMKCKNV 223
Score = 33.5 bits (76), Expect = 0.015
Identities = 22/141 (15%), Positives = 45/141 (31%), Gaps = 16/141 (11%)
Query: 1 HLLLAESWRELFILGLAQYLPSLDLGELV-------ESCKSRHVDIEEEVIRFQSVLNEF 53
LL W E+ ++GL + I E + + F
Sbjct: 67 VRLLESCWMEVLMVGLMWRSIDHPGKLIFAPDLVLDRDEGKCVEGILEIFDMLLATTSRF 126
Query: 54 KVLNIDPYEYDYIRAITLFKTAFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELV 113
+ L + EY ++A+ L + LA + +E +L + LV
Sbjct: 127 RELKLQHKEYLCVKAMILLNS---------SMYPLASANQEAESSRKLTHLLNAVTDALV 177
Query: 114 ESCKSRHVDIEEEVIRFQSVL 134
+ +++ +R ++L
Sbjct: 178 WVIAKSGISSQQQSVRLANLL 198
>d1nhza_ a.123.1.1 (A:) Glucocorticoid receptor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 247
Score = 62.4 bits (151), Expect = 3e-12
Identities = 24/166 (14%), Positives = 45/166 (27%), Gaps = 31/166 (18%)
Query: 85 HLLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD--------IEEEVIRFQSVLNE 136
LL SW L L L+ ++ + ++ V +E
Sbjct: 64 MTLLQYSWMSLMAFALGWRSYRQSSANLLCFAPDLIINEQRMTLPDMYDQCKHMLYVSSE 123
Query: 137 FKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGH 196
L + EY ++ + L + P+ L+ I+
Sbjct: 124 LHRLQVSYEEYLCMKTLLLLSS--------------------VPKDGLKSQELFDEIRMT 163
Query: 197 TQIFLNKYI---HTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFF 239
L K I RF ++ +L + + +L F
Sbjct: 164 YIKELGKAIVKREGNSSQNWQRFYQLTKLLDSMHEVVENLLNYCFQ 209
Score = 41.6 bits (97), Expect = 3e-05
Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 8/82 (9%)
Query: 1 HLLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD--------IEEEVIRFQSVLNE 52
LL SW L L L+ ++ + ++ V +E
Sbjct: 64 MTLLQYSWMSLMAFALGWRSYRQSSANLLCFAPDLIINEQRMTLPDMYDQCKHMLYVSSE 123
Query: 53 FKVLNIDPYEYDYIRAITLFKT 74
L + EY ++ + L +
Sbjct: 124 LHRLQVSYEEYLCMKTLLLLSS 145
>d1n46a_ a.123.1.1 (A:) Thyroid hormone receptor beta (TR-beta)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 60.8 bits (147), Expect = 1e-11
Identities = 22/180 (12%), Positives = 46/180 (25%), Gaps = 27/180 (15%)
Query: 86 LLLAESWRELFILGLAQ-YLPSLDLGELVESCK-----SRHVDIEEEVIRFQSVLNEFKV 139
+LL E+ L A Y P + L ++ + +
Sbjct: 93 ILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSS 152
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQI 199
N+D E ++A+ L L V I Q +
Sbjct: 153 FNLDDTEVALLQAVLLMS---------------------SDRPGLACVERIEKYQDSFLL 191
Query: 200 FLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKN 259
YI+ + K+ + + L+ I + + ++++
Sbjct: 192 AFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 251
Score = 29.6 bits (66), Expect = 0.29
Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 6/77 (7%)
Query: 2 LLLAESWRELFILGLAQ-YLPSLDLGELVESCK-----SRHVDIEEEVIRFQSVLNEFKV 55
+LL E+ L A Y P + L ++ + +
Sbjct: 93 ILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSS 152
Query: 56 LNIDPYEYDYIRAITLF 72
N+D E ++A+ L
Sbjct: 153 FNLDDTEVALLQAVLLM 169
>d1n83a_ a.123.1.1 (A:) Orphan nuclear receptor ROR-alpha {Human
(Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 60.5 bits (146), Expect = 1e-11
Identities = 20/169 (11%), Positives = 49/169 (28%), Gaps = 27/169 (15%)
Query: 85 HLLLAESWRELFILGLAQYLPSLDL-----GELVESCKSRHVDIEEEVIRFQSVLNEFKV 139
+LL E+ + + + S + G+ + + E+ +
Sbjct: 93 IVLLKAGSLEVVFIRMCRAFDSQNNTVYFDGKYASPDVFKSLGCEDFISFVFEFGKSLCS 152
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQI 199
+++ E A L S L++ + I +Q Q+
Sbjct: 153 MHLTEDEIALFSAFVLMS---------------------ADRSWLQEKVKIEKLQQKIQL 191
Query: 200 FLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTT 248
L + + + K+ + L+++ E+L I +
Sbjct: 192 ALQHVLQKNHR-EDGILTKLICKVSTLRALCGRHTEKLMAFKAIYPDIV 239
Score = 36.2 bits (83), Expect = 0.002
Identities = 9/78 (11%), Positives = 23/78 (29%), Gaps = 5/78 (6%)
Query: 1 HLLLAESWRELFILGLAQYLPSLDL-----GELVESCKSRHVDIEEEVIRFQSVLNEFKV 55
+LL E+ + + + S + G+ + + E+ +
Sbjct: 93 IVLLKAGSLEVVFIRMCRAFDSQNNTVYFDGKYASPDVFKSLGCEDFISFVFEFGKSLCS 152
Query: 56 LNIDPYEYDYIRAITLFK 73
+++ E A L
Sbjct: 153 MHLTEDEIALFSAFVLMS 170
>d1pq9a_ a.123.1.1 (A:) Oxysterols receptor LXR-beta {Human (Homo
sapiens) [TaxId: 9606]}
Length = 239
Score = 60.4 bits (146), Expect = 2e-11
Identities = 28/168 (16%), Positives = 54/168 (32%), Gaps = 28/168 (16%)
Query: 85 HLLLAESWRELFILGLAQ-YLPSLDLGELVESCKSRHVDIE------EEVIRFQSVLNEF 137
LL S E+ +L A+ Y + ++ D E +
Sbjct: 82 IALLKASTIEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAM 141
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
+ L +D EY + AI +F +++ + A+Q
Sbjct: 142 RRLGLDDAEYALLIAINIFS---------------------ADRPNVQEPGRVEALQQPY 180
Query: 198 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
L Y P RF ++ + L L+++ S+ E++F +
Sbjct: 181 VEALLSYTRIKRPQDQLRFPRMLMKLVSLRTLSSVHSEQVFALRLQDK 228
Score = 31.6 bits (71), Expect = 0.071
Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 7/88 (7%)
Query: 1 HLLLAESWRELFILGLAQ-YLPSLDLGELVESCKSRHVDIE------EEVIRFQSVLNEF 53
LL S E+ +L A+ Y + ++ D E +
Sbjct: 82 IALLKASTIEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAM 141
Query: 54 KVLNIDPYEYDYIRAITLFKTAFTSRRE 81
+ L +D EY + AI +F + +E
Sbjct: 142 RRLGLDDAEYALLIAINIFSADRPNVQE 169
>d1sqna_ a.123.1.1 (A:) Progesterone receptor {Human (Homo sapiens)
[TaxId: 9606]}
Length = 251
Score = 60.1 bits (145), Expect = 2e-11
Identities = 25/175 (14%), Positives = 49/175 (28%), Gaps = 34/175 (19%)
Query: 85 HLLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD--------IEEEVIRFQSVLNE 136
L+ SW L + GL G+++ ++ + + E
Sbjct: 67 ITLIQYSWMSLMVFGLGWRSYKHVSGQMLYFAPDLILNEQRMKESSFYSLCLTMWQIPQE 126
Query: 137 FKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGH 196
F L + E+ ++ + L T+ P LR ++
Sbjct: 127 FVKLQVSQEEFLCMKVLLLLNTI--------------------PLEGLRSQTQFEEMRSS 166
Query: 197 TQIFLNKYI---HTVYPSQPTRFCKIQLILPRLKSIPSLVLE---ELFFRNIIGH 245
L K I S RF ++ +L L + + F ++
Sbjct: 167 YIRELIKAIGLRQKGVVSSSQRFYQLTKLLDNLHDLVKQLHLYCLNTFIQSRALS 221
Score = 36.6 bits (84), Expect = 0.002
Identities = 13/83 (15%), Positives = 27/83 (32%), Gaps = 8/83 (9%)
Query: 1 HLLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD--------IEEEVIRFQSVLNE 52
L+ SW L + GL G+++ ++ + + E
Sbjct: 67 ITLIQYSWMSLMVFGLGWRSYKHVSGQMLYFAPDLILNEQRMKESSFYSLCLTMWQIPQE 126
Query: 53 FKVLNIDPYEYDYIRAITLFKTA 75
F L + E+ ++ + L T
Sbjct: 127 FVKLQVSQEEFLCMKVLLLLNTI 149
>d2qw4a1 a.123.1.1 (A:32-264) Orphan nuclear receptor NR4A1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 233
Score = 59.7 bits (144), Expect = 3e-11
Identities = 26/167 (15%), Positives = 54/167 (32%), Gaps = 29/167 (17%)
Query: 86 LLLAESWRELFILGLAQYLPSLD-----LGELVESCKSRHVDIEEEVIRFQSVLNEFKVL 140
LLL ++ ELFIL LA + LV + + + L
Sbjct: 75 LLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFGDWIDSILAFSRSLHSL 134
Query: 141 NIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIF 200
+D + + A+ L L++ + +Q
Sbjct: 135 LVDVPAFACLSALVLI----------------------TDRHGLQEPRRVEELQNRIASC 172
Query: 201 LNKYIHTV--YPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 245
L +++ V P + ++ LP L+++ + L+ +F+ +
Sbjct: 173 LKEHVAAVAGEPQPASCLSRLLGKLPELRTLCTQGLQRIFYLKLEDL 219
Score = 31.2 bits (70), Expect = 0.096
Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 5/80 (6%)
Query: 2 LLLAESWRELFILGLAQYLPSLD-----LGELVESCKSRHVDIEEEVIRFQSVLNEFKVL 56
LLL ++ ELFIL LA + LV + + + L
Sbjct: 75 LLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFGDWIDSILAFSRSLHSL 134
Query: 57 NIDPYEYDYIRAITLFKTAF 76
+D + + A+ L
Sbjct: 135 LVDVPAFACLSALVLITDRH 154
>d1nq7a_ a.123.1.1 (A:) Orphan nuclear receptor ROR-beta {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 244
Score = 59.0 bits (142), Expect = 4e-11
Identities = 23/189 (12%), Positives = 51/189 (26%), Gaps = 28/189 (14%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDL-----GELVESCKSRHVDIEEEVIR 129
F + LLL E+ ++ + + L+ G+ + + ++ V
Sbjct: 75 GFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVLFEGKYGGMQMFKALGSDDLVNE 134
Query: 130 FQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIA 189
L + E + L + L +
Sbjct: 135 AFDFAKNLCSLQLTEEEIALFSSAVLIS---------------------PDRAWLLEPRK 173
Query: 190 IAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTI 249
+ +Q L I + K+ +P + ++ +L E+L H +
Sbjct: 174 VQKLQEKIYFALQHVIQKNHL-DDETLAKLIAKIPTITAVCNLHGEKLQVFKQS-HPDIV 231
Query: 250 KKTIWHMYK 258
+YK
Sbjct: 232 NTLFPPLYK 240
Score = 35.9 bits (82), Expect = 0.003
Identities = 10/77 (12%), Positives = 23/77 (29%), Gaps = 5/77 (6%)
Query: 2 LLLAESWRELFILGLAQYLPSLDL-----GELVESCKSRHVDIEEEVIRFQSVLNEFKVL 56
LLL E+ ++ + + L+ G+ + + ++ V L
Sbjct: 86 LLLKSGCLEVVLVRMCRAFNPLNNTVLFEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSL 145
Query: 57 NIDPYEYDYIRAITLFK 73
+ E + L
Sbjct: 146 QLTEEEIALFSSAVLIS 162
>d1t7ra_ a.123.1.1 (A:) Androgen receptor {Chimpanzee (Pan
troglodytes) [TaxId: 9598]}
Length = 250
Score = 58.6 bits (141), Expect = 7e-11
Identities = 23/175 (13%), Positives = 58/175 (33%), Gaps = 34/175 (19%)
Query: 85 HLLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVDIE--------EEVIRFQSVLNE 136
++ SW L + + + ++ + + +R + + E
Sbjct: 66 MAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHKSRMYSQCVRMRHLSQE 125
Query: 137 FKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGH 196
F L I P E+ ++A+ LF S P L++ ++ +
Sbjct: 126 FGWLQITPQEFLCMKALLLF--------------------SIIPVDGLKNQKFFDELRMN 165
Query: 197 TQIFLNKYIHTVYPS---QPTRFCKIQLILPRLKSIPSLVLE---ELFFRNIIGH 245
L++ I + RF ++ +L ++ I + + +L ++ +
Sbjct: 166 YIKELDRIIACKRKNPTSCSRRFYQLTKLLDSVQPIARELHQFTFDLLIKSHMVS 220
>d1nrla_ a.123.1.1 (A:) Pregnane x receptor, PXR {Human (Homo
sapiens) [TaxId: 9606]}
Length = 292
Score = 59.0 bits (142), Expect = 8e-11
Identities = 29/160 (18%), Positives = 49/160 (30%), Gaps = 28/160 (17%)
Query: 87 LLAESWRELFILGLAQYLP----SLDLGELVESCKSRHVDIEEEVIRFQSVLNEF-KVLN 141
LL + EL L + + G L + ++ ++ + K L
Sbjct: 134 LLKGAAFELCQLRFNTVFNAETGTWECGRLSYCLEDTAGGFQQLLLEPMLKFHYMLKKLQ 193
Query: 142 IDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQIFL 201
+ EY ++AI+LF + + +Q I L
Sbjct: 194 LHEEEYVLMQAISLFS---------------------PDRPGVLQHRVVDQLQEQFAITL 232
Query: 202 NKYIHTVYPSQP--TRFCKIQLILPRLKSIPSLVLEELFF 239
YI P F KI +L L+SI + + L
Sbjct: 233 KSYIECNRPQPAHRFLFLKIMAMLTELRSINAQHTQRLLR 272
Score = 37.0 bits (85), Expect = 0.001
Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 9/107 (8%)
Query: 3 LLAESWRELFILGLAQYLP----SLDLGELVESCKSRHVDIEEEVIRFQSVLNEF-KVLN 57
LL + EL L + + G L + ++ ++ + K L
Sbjct: 134 LLKGAAFELCQLRFNTVFNAETGTWECGRLSYCLEDTAGGFQQLLLEPMLKFHYMLKKLQ 193
Query: 58 IDPYEYDYIRAITLFKTAFTSRRELAGHLLLAESWRELFILGLAQYL 104
+ EY ++AI+LF R + + +E F + L Y+
Sbjct: 194 LHEEEYVLMQAISLFSPD----RPGVLQHRVVDQLQEQFAITLKSYI 236
>d2r40d1 a.123.1.1 (D:287-529) Ecdysone receptor {Noctuid moth
(Heliothis virescens) [TaxId: 7102]}
Length = 243
Score = 55.4 bits (133), Expect = 7e-10
Identities = 25/174 (14%), Positives = 48/174 (27%), Gaps = 31/174 (17%)
Query: 75 AFTSRRELAGHLLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD------IEEEVI 128
F + LL E+ +L +A+ + L + ++ D + +
Sbjct: 73 GFAKISQSDQITLLKACSSEVMMLRVARRYDAATDSVLFANNQAYTRDNYRKAGMAYVIE 132
Query: 129 RFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVI 188
+ +D Y + AI +F L +
Sbjct: 133 DLLHFCRCMYSMMMDNVHYALLTAIVIF----------------------SDRPGLEQPL 170
Query: 189 AIAAIQGHTQIFLNKYIHTVYPSQP---TRFCKIQLILPRLKSIPSLVLEELFF 239
+ IQ + L YI + P F KI IL ++++
Sbjct: 171 LVEEIQRYYLNTLRVYILNQNSASPRCAVIFGKILGILTEIRTLGMQNSNMCIS 224
Score = 32.7 bits (74), Expect = 0.030
Identities = 12/78 (15%), Positives = 26/78 (33%), Gaps = 6/78 (7%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD------IEEEVIRFQSVLNEFKV 55
LL E+ +L +A+ + L + ++ D + +
Sbjct: 84 TLLKACSSEVMMLRVARRYDAATDSVLFANNQAYTRDNYRKAGMAYVIEDLLHFCRCMYS 143
Query: 56 LNIDPYEYDYIRAITLFK 73
+ +D Y + AI +F
Sbjct: 144 MMMDNVHYALLTAIVIFS 161
>d1xvpb_ a.123.1.1 (B:) Orphan nuclear receptor NR1I3 (CAR) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 246
Score = 53.5 bits (128), Expect = 3e-09
Identities = 24/162 (14%), Positives = 42/162 (25%), Gaps = 29/162 (17%)
Query: 86 LLLAESWRELFILGLAQYLPS-----LDLGELVESCKSRHVDIEEEVIR-FQSVLNEFKV 139
LL + E+ + L L V + E + +
Sbjct: 90 SLLKGAAVEICHIVLNTTFCLQTQNFLCGPLRYTIEDGARVGFQVEFLELLFHFHGTLRK 149
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQI 199
L + EY + A+ LF + I +Q +
Sbjct: 150 LQLQEPEYVLLAAMALFS---------------------PDRPGVTQRDEIDQLQEEMAL 188
Query: 200 FLNKYIHTVY--PSQPTRFCKIQLILPRLKSIPSLVLEELFF 239
L YI P + K+ +L L+SI ++
Sbjct: 189 TLQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQH 230
Score = 30.4 bits (68), Expect = 0.19
Identities = 13/77 (16%), Positives = 22/77 (28%), Gaps = 6/77 (7%)
Query: 2 LLLAESWRELFILGLAQYLPS-----LDLGELVESCKSRHVDIEEEVIR-FQSVLNEFKV 55
LL + E+ + L L V + E + +
Sbjct: 90 SLLKGAAVEICHIVLNTTFCLQTQNFLCGPLRYTIEDGARVGFQVEFLELLFHFHGTLRK 149
Query: 56 LNIDPYEYDYIRAITLF 72
L + EY + A+ LF
Sbjct: 150 LQLQEPEYVLLAAMALF 166
>d1xnxa_ a.123.1.1 (A:) Orphan nuclear receptor NR1I3 (CAR) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 232
Score = 52.0 bits (124), Expect = 1e-08
Identities = 26/160 (16%), Positives = 44/160 (27%), Gaps = 29/160 (18%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD------IEEEVIRFQSVLNEFKV 139
LL + E+ + L + D E + K
Sbjct: 89 SLLKGAAVEILHISLNTTFCLQTENFFCGPLCYKMEDAVHAGFQYEFLESILHFHKNLKG 148
Query: 140 LNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHTQI 199
L++ EY + A LF + I +Q +
Sbjct: 149 LHLQEPEYVLMAATALFS---------------------PDRPGVTQREEIDQLQEEMAL 187
Query: 200 FLNKYIHTVYPSQPTR--FCKIQLILPRLKSIPSLVLEEL 237
LN +I +R + K+ +L L+SI + EL
Sbjct: 188 ILNNHIMEQQSRLQSRFLYAKLMGLLADLRSINNAYSYEL 227
Score = 33.1 bits (75), Expect = 0.021
Identities = 13/78 (16%), Positives = 21/78 (26%), Gaps = 6/78 (7%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELVESCKSRHVD------IEEEVIRFQSVLNEFKV 55
LL + E+ + L + D E + K
Sbjct: 89 SLLKGAAVEILHISLNTTFCLQTENFFCGPLCYKMEDAVHAGFQYEFLESILHFHKNLKG 148
Query: 56 LNIDPYEYDYIRAITLFK 73
L++ EY + A LF
Sbjct: 149 LHLQEPEYVLMAATALFS 166
>d1ie9a_ a.123.1.1 (A:) Vitamin D nuclear receptor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 255
Score = 51.2 bits (122), Expect = 2e-08
Identities = 29/164 (17%), Positives = 50/164 (30%), Gaps = 31/164 (18%)
Query: 86 LLLAESWRELFILGLAQYLPSLDLGELV--------ESCKSRHVDIEEEVIRFQSVLNEF 137
+LL S E+ +L + D+ S ++ E +
Sbjct: 93 VLLKSSAIEVIMLRSNESFTMDDMSWTCGNQDYKYRVSDVTKAGHSLELIEPLIKFQVGL 152
Query: 138 KVLNIDPYEYDYIRAITLFKTVIEDEVKDNRSSSSSDDGSEHPESCLRDVIAIAAIQGHT 197
K LN+ E+ + AI + S D ++D I AIQ
Sbjct: 153 KKLNLHEEEHVLLMAICIV---------------SPDR------PGVQDAALIEAIQDRL 191
Query: 198 QIFLNKYIHTVYP--SQPTRFCKIQLILPRLKSIPSLVLEELFF 239
L YI +P + K+ L L+S+ ++
Sbjct: 192 SNTLQTYIRCRHPPPGSHLLYAKMIQKLADLRSLNEEHSKQYRC 235
Score = 33.1 bits (75), Expect = 0.024
Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 12/111 (10%)
Query: 2 LLLAESWRELFILGLAQYLPSLDLGELV--------ESCKSRHVDIEEEVIRFQSVLNEF 53
+LL S E+ +L + D+ S ++ E +
Sbjct: 93 VLLKSSAIEVIMLRSNESFTMDDMSWTCGNQDYKYRVSDVTKAGHSLELIEPLIKFQVGL 152
Query: 54 KVLNIDPYEYDYIRAITLFKTAFTSRRELAGHLLLAESWRELFILGLAQYL 104
K LN+ E+ + AI + ++ A L E+ ++ L Y+
Sbjct: 153 KKLNLHEEEHVLLMAICIVSPDRPGVQDAA----LIEAIQDRLSNTLQTYI 199
>d1lfwa1 c.56.5.4 (A:1-186,A:383-468) Aminopeptidase PepV
{Lactobacillus delbrueckii [TaxId: 1584]}
Length = 272
Score = 26.5 bits (57), Expect = 3.5
Identities = 13/58 (22%), Positives = 23/58 (39%)
Query: 106 SLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTVIEDE 163
L+ EL E+ K + EE+I S + P + A+T F + + +
Sbjct: 2 DLNFKELAEAKKDAILKDLEELIAIDSSEDLENATEEYPVGKGPVDAMTKFLSFAKRD 59
Score = 26.1 bits (56), Expect = 4.6
Identities = 13/57 (22%), Positives = 21/57 (36%)
Query: 22 SLDLGELVESCKSRHVDIEEEVIRFQSVLNEFKVLNIDPYEYDYIRAITLFKTAFTS 78
L+ EL E+ K + EE+I S + P + A+T F +
Sbjct: 2 DLNFKELAEAKKDAILKDLEELIAIDSSEDLENATEEYPVGKGPVDAMTKFLSFAKR 58
>d2bcgg2 c.3.1.3 (G:400-446) Guanine nucleotide dissociation
inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 47
Score = 23.5 bits (51), Expect = 5.4
Identities = 15/31 (48%), Positives = 15/31 (48%)
Query: 160 IEDEVKDNRSSSSSDDGSEHPESCLRDVIAI 190
ED KDN S S D S H ES DV I
Sbjct: 2 REDGSKDNIYLSRSYDASSHFESMTDDVKDI 32
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.407
Gapped
Lambda K H
0.267 0.0535 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,021,781
Number of extensions: 48246
Number of successful extensions: 210
Number of sequences better than 10.0: 1
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 62
Length of query: 261
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 177
Effective length of database: 1,254,276
Effective search space: 222006852
Effective search space used: 222006852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.3 bits)