BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16764
(113 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|47077588|dbj|BAD18677.1| unnamed protein product [Homo sapiens]
gi|119568771|gb|EAW48386.1| nuclear receptor subfamily 2, group E, member 1, isoform CRA_b
[Homo sapiens]
Length = 422
Score = 69.3 bits (168), Expect = 3e-10, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 24 AYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPS 83
A + GS +R + AA+Q Q+ LN YIHT YP+QP RF K+ L+LP L+SI
Sbjct: 333 AVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISP 392
Query: 84 LVLEELFFRNIIGHNTTIKKTIWHMYKNA 112
+EE+FF+ IG N I + + MYK++
Sbjct: 393 STIEEVFFKKTIG-NVPITRLLSDMYKSS 420
>gi|259013325|ref|NP_001158362.1| tailless [Saccoglossus kowalevskii]
gi|32307797|gb|AAP79295.1| tailless [Saccoglossus kowalevskii]
Length = 361
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 43 AAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIK 102
A +Q Q+ L+KYIHT YP+QP RF K+ L+LP+L++I +EELFFR IG N I+
Sbjct: 291 ATLQDQAQLTLSKYIHTKYPTQPFRFGKLLLMLPQLRAIRPSTIEELFFRKTIG-NIPIE 349
Query: 103 KTIWHMYK 110
+ + MYK
Sbjct: 350 RLLCDMYK 357
>gi|354469258|ref|XP_003497047.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Cricetulus griseus]
Length = 518
Score = 68.9 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 24 AYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPS 83
A + GS +R + AA+Q Q+ LN YIHT YP+QP RF K+ L+LP L+SI
Sbjct: 429 AVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISP 488
Query: 84 LVLEELFFRNIIGHNTTIKKTIWHMYKNA 112
+EE+FF+ IG N I + + MYK++
Sbjct: 489 STIEEVFFKKTIG-NVPITRLLSDMYKSS 516
>gi|449273615|gb|EMC83088.1| Nuclear receptor subfamily 2 group E member 1, partial [Columba
livia]
Length = 376
Score = 68.9 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 24 AYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPS 83
A + GS +R + AA+Q Q+ LN YIHT YP+QP RF K+ L+LP L+SI
Sbjct: 287 AVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISP 346
Query: 84 LVLEELFFRNIIGHNTTIKKTIWHMYKNA 112
+EE+FF+ IG N I + + MYK++
Sbjct: 347 STIEEVFFKKTIG-NVPITRLLSDMYKSS 374
>gi|74187239|dbj|BAE22615.1| unnamed protein product [Mus musculus]
Length = 173
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 24 AYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPS 83
A + GS +R + AA+Q Q+ LN YIHT YP+QP RF K+ L+LP L+SI
Sbjct: 84 AVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISP 143
Query: 84 LVLEELFFRNIIGHNTTIKKTIWHMYKNAG 113
+EE+FF+ IG N I + + MYK++
Sbjct: 144 STIEEVFFKKTIG-NVPITRLLSDMYKSSD 172
>gi|291232333|ref|XP_002736112.1| PREDICTED: tailless-like [Saccoglossus kowalevskii]
Length = 308
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 43 AAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIK 102
A +Q Q+ L+KYIHT YP+QP RF K+ L+LP+L++I +EELFFR IG N I+
Sbjct: 238 ATLQDQAQLTLSKYIHTKYPTQPFRFGKLLLMLPQLRAIRPSTIEELFFRKTIG-NIPIE 296
Query: 103 KTIWHMYK 110
+ + MYK
Sbjct: 297 RLLCDMYK 304
>gi|242013777|ref|XP_002427577.1| Orphan nuclear receptor NR2E1, putative [Pediculus humanus
corporis]
gi|212511992|gb|EEB14839.1| Orphan nuclear receptor NR2E1, putative [Pediculus humanus
corporis]
Length = 403
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 43 AAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIK 102
AA+Q HTQ+ LNKYI +P+QP RF K+ L+LP L+S+ + +EELFFR IG N I+
Sbjct: 334 AAVQDHTQLTLNKYISAAHPTQPFRFGKLLLLLPSLRSVSNNTIEELFFRRTIG-NIPIE 392
Query: 103 KTIWHMYK 110
+ I MYK
Sbjct: 393 RIICDMYK 400
>gi|449497928|ref|XP_002192943.2| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Taeniopygia guttata]
Length = 532
Score = 68.9 bits (167), Expect = 4e-10, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 24 AYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPS 83
A + GS +R + AA+Q Q+ LN YIHT YP+QP RF K+ L+LP L+SI
Sbjct: 443 AVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISP 502
Query: 84 LVLEELFFRNIIGHNTTIKKTIWHMYKNA 112
+EE+FF+ IG N I + + MYK++
Sbjct: 503 STIEEVFFKKTIG-NVPITRLLSDMYKSS 530
>gi|45384018|ref|NP_990501.1| nuclear receptor subfamily 2 group E member 1 [Gallus gallus]
gi|6094488|sp|Q91379.1|NR2E1_CHICK RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll
gi|619338|gb|AAB31467.1| nuclear receptor TLX [Gallus gallus]
gi|745066|prf||2015392A nuclear receptor Tlx
Length = 385
Score = 68.9 bits (167), Expect = 4e-10, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 24 AYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPS 83
A + GS +R + AA+Q Q+ LN YIHT YP+QP RF K+ L+LP L+SI
Sbjct: 296 AVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISP 355
Query: 84 LVLEELFFRNIIGHNTTIKKTIWHMYKNA 112
+EE+FF+ IG N I + + MYK++
Sbjct: 356 STIEEVFFKKTIG-NVPITRLLSDMYKSS 383
>gi|300676833|gb|ADK26709.1| nuclear receptor subfamily 2, group E, member 1 [Zonotrichia
albicollis]
gi|300676928|gb|ADK26800.1| nuclear receptor subfamily 2, group E, member 1 [Zonotrichia
albicollis]
Length = 385
Score = 68.6 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 24 AYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPS 83
A + GS +R + AA+Q Q+ LN YIHT YP+QP RF K+ L+LP L+SI
Sbjct: 296 AVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISP 355
Query: 84 LVLEELFFRNIIGHNTTIKKTIWHMYKNA 112
+EE+FF+ IG N I + + MYK++
Sbjct: 356 STIEEVFFKKTIG-NVPITRLLSDMYKSS 383
>gi|348560562|ref|XP_003466082.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Cavia porcellus]
Length = 385
Score = 68.6 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 24 AYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPS 83
A + GS +R + AA+Q Q+ LN YIHT YP+QP RF K+ L+LP L+SI
Sbjct: 296 AVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISP 355
Query: 84 LVLEELFFRNIIGHNTTIKKTIWHMYKNA 112
+EE+FF+ IG N I + + MYK++
Sbjct: 356 STIEEVFFKKTIG-NVPITRLLSDMYKSS 383
>gi|300798463|ref|NP_001179582.1| nuclear receptor subfamily 2 group E member 1 [Bos taurus]
gi|426234591|ref|XP_004011277.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Ovis
aries]
gi|296484166|tpg|DAA26281.1| TPA: nuclear receptor subfamily 2, group E, member 1 [Bos taurus]
Length = 385
Score = 68.6 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 24 AYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPS 83
A + GS +R + AA+Q Q+ LN YIHT YP+QP RF K+ L+LP L+SI
Sbjct: 296 AVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISP 355
Query: 84 LVLEELFFRNIIGHNTTIKKTIWHMYKNA 112
+EE+FF+ IG N I + + MYK++
Sbjct: 356 STIEEVFFKKTIG-NVPITRLLSDMYKSS 383
>gi|444709054|gb|ELW50086.1| Nuclear receptor subfamily 2 group E member 1 [Tupaia chinensis]
Length = 441
Score = 68.6 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 24 AYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPS 83
A + GS +R + AA+Q Q+ LN YIHT YP+QP RF K+ L+LP L+SI
Sbjct: 352 AVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISP 411
Query: 84 LVLEELFFRNIIGHNTTIKKTIWHMYKNA 112
+EE+FF+ IG N I + + MYK++
Sbjct: 412 STIEEVFFKKTIG-NVPITRLLSDMYKSS 439
>gi|284005564|ref|NP_001164794.1| nuclear receptor subfamily 2 group E member 1 [Oryctolagus
cuniculus]
gi|217038306|gb|ACJ76603.1| nuclear receptor subfamily 2 group E member 1 (predicted)
[Oryctolagus cuniculus]
Length = 385
Score = 68.6 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 24 AYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPS 83
A + GS +R + AA+Q Q+ LN YIHT YP+QP RF K+ L+LP L+SI
Sbjct: 296 AVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISP 355
Query: 84 LVLEELFFRNIIGHNTTIKKTIWHMYKNA 112
+EE+FF+ IG N I + + MYK++
Sbjct: 356 STIEEVFFKKTIG-NVPITRLLSDMYKSS 383
>gi|326916109|ref|XP_003204353.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Meleagris gallopavo]
Length = 339
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 24 AYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPS 83
A + GS +R + AA+Q Q+ LN YIHT YP+QP RF K+ L+LP L+SI
Sbjct: 250 AVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISP 309
Query: 84 LVLEELFFRNIIGHNTTIKKTIWHMYKNA 112
+EE+FF+ IG N I + + MYK++
Sbjct: 310 STIEEVFFKKTIG-NVPITRLLSDMYKSS 337
>gi|73973687|ref|XP_532253.2| PREDICTED: nuclear receptor subfamily 2 group E member 1 isoform 1
[Canis lupus familiaris]
gi|194216311|ref|XP_001502073.2| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Equus
caballus]
gi|335279315|ref|XP_003353327.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Sus
scrofa]
gi|190402236|gb|ACE77650.1| nuclear receptor subfamily 2, group E, member 1 homolog (predicted)
[Sorex araneus]
Length = 385
Score = 68.6 bits (166), Expect = 5e-10, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 24 AYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPS 83
A + GS +R + AA+Q Q+ LN YIHT YP+QP RF K+ L+LP L+SI
Sbjct: 296 AVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISP 355
Query: 84 LVLEELFFRNIIGHNTTIKKTIWHMYKNA 112
+EE+FF+ IG N I + + MYK++
Sbjct: 356 STIEEVFFKKTIG-NVPITRLLSDMYKSS 383
>gi|395534716|ref|XP_003769385.1| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Sarcophilus harrisii]
Length = 385
Score = 68.6 bits (166), Expect = 5e-10, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 24 AYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPS 83
A + GS +R + AA+Q Q+ LN YIHT YP+QP RF K+ L+LP L+SI
Sbjct: 296 AVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISP 355
Query: 84 LVLEELFFRNIIGHNTTIKKTIWHMYKNA 112
+EE+FF+ IG N I + + MYK++
Sbjct: 356 STIEEVFFKKTIG-NVPITRLLSDMYKSS 383
>gi|440904093|gb|ELR54654.1| Nuclear receptor subfamily 2 group E member 1, partial [Bos
grunniens mutus]
Length = 396
Score = 68.6 bits (166), Expect = 5e-10, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 24 AYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPS 83
A + GS +R + AA+Q Q+ LN YIHT YP+QP RF K+ L+LP L+SI
Sbjct: 307 AVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISP 366
Query: 84 LVLEELFFRNIIGHNTTIKKTIWHMYKNA 112
+EE+FF+ IG N I + + MYK++
Sbjct: 367 STIEEVFFKKTIG-NVPITRLLSDMYKSS 394
>gi|60828539|gb|AAX36846.1| nuclear receptor subfamily 2 group E member 1 [synthetic construct]
Length = 386
Score = 68.6 bits (166), Expect = 5e-10, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 24 AYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPS 83
A + GS +R + AA+Q Q+ LN YIHT YP+QP RF K+ L+LP L+SI
Sbjct: 296 AVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISP 355
Query: 84 LVLEELFFRNIIGHNTTIKKTIWHMYKNA 112
+EE+FF+ IG N I + + MYK++
Sbjct: 356 STIEEVFFKKTIG-NVPITRLLSDMYKSS 383
>gi|226526921|gb|ACO71279.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Dasypus novemcinctus]
Length = 385
Score = 68.6 bits (166), Expect = 5e-10, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 24 AYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPS 83
A + GS +R + AA+Q Q+ LN YIHT YP+QP RF K+ L+LP L+SI
Sbjct: 296 AVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISP 355
Query: 84 LVLEELFFRNIIGHNTTIKKTIWHMYKNA 112
+EE+FF+ IG N I + + MYK++
Sbjct: 356 STIEEVFFKKTIG-NVPITRLLSDMYKSS 383
>gi|183637194|gb|ACC64552.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Rhinolophus ferrumequinum]
Length = 385
Score = 68.6 bits (166), Expect = 5e-10, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 24 AYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPS 83
A + GS +R + AA+Q Q+ LN YIHT YP+QP RF K+ L+LP L+SI
Sbjct: 296 AVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISP 355
Query: 84 LVLEELFFRNIIGHNTTIKKTIWHMYKNA 112
+EE+FF+ IG N I + + MYK++
Sbjct: 356 STIEEVFFKKTIG-NVPITRLLSDMYKSS 383
>gi|169409578|gb|ACA57920.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Callicebus moloch]
Length = 385
Score = 68.6 bits (166), Expect = 5e-10, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 24 AYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPS 83
A + GS +R + AA+Q Q+ LN YIHT YP+QP RF K+ L+LP L+SI
Sbjct: 296 AVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISP 355
Query: 84 LVLEELFFRNIIGHNTTIKKTIWHMYKNA 112
+EE+FF+ IG N I + + MYK++
Sbjct: 356 STIEEVFFKKTIG-NVPITRLLSDMYKSS 383
>gi|149046956|gb|EDL99704.1| rCG58537 [Rattus norvegicus]
Length = 385
Score = 68.6 bits (166), Expect = 5e-10, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 24 AYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPS 83
A + GS +R + AA+Q Q+ LN YIHT YP+QP RF K+ L+LP L+SI
Sbjct: 296 AVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISP 355
Query: 84 LVLEELFFRNIIGHNTTIKKTIWHMYKNA 112
+EE+FF+ IG N I + + MYK++
Sbjct: 356 STIEEVFFKKTIG-NVPITRLLSDMYKSS 383
>gi|4507537|ref|NP_003260.1| nuclear receptor subfamily 2 group E member 1 [Homo sapiens]
gi|281183082|ref|NP_001162457.1| nuclear receptor subfamily 2 group E member 1 [Papio anubis]
gi|388490051|ref|NP_001252896.1| nuclear receptor subfamily 2 group E member 1 [Macaca mulatta]
gi|114608752|ref|XP_527467.2| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Pan
troglodytes]
gi|332259804|ref|XP_003278973.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Nomascus
leucogenys]
gi|344264555|ref|XP_003404357.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Loxodonta
africana]
gi|403289711|ref|XP_003935987.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Saimiri
boliviensis boliviensis]
gi|426354159|ref|XP_004044535.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Gorilla
gorilla gorilla]
gi|426354161|ref|XP_004044536.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Gorilla gorilla gorilla]
gi|9910804|sp|Q9Y466.1|NR2E1_HUMAN RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll; Short=hTll
gi|11141399|gb|AAG31945.1|AF220532_1 orphan nuclear receptor [Homo sapiens]
gi|15705907|gb|AAL05871.1|AF411525_1 nuclear receptor subfamily 2 group E member 1 [Homo sapiens]
gi|2292902|emb|CAA73725.1| Tailless protein [Homo sapiens]
gi|20380429|gb|AAH28031.1| Nuclear receptor subfamily 2, group E, member 1 [Homo sapiens]
gi|61358419|gb|AAX41565.1| nuclear receptor subfamily 2 group E member 1 [synthetic construct]
gi|119568770|gb|EAW48385.1| nuclear receptor subfamily 2, group E, member 1, isoform CRA_a
[Homo sapiens]
gi|164449656|gb|ABY56294.1| nuclear receptor subfamily 2, group E, member 1 (predicted) [Papio
anubis]
gi|166183798|gb|ABY84160.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Callithrix jacchus]
gi|216409726|dbj|BAH02300.1| tailes-related receptor [Homo sapiens]
gi|261857884|dbj|BAI45464.1| nuclear receptor subfamily 2, group E, member 1 [synthetic
construct]
gi|325495503|gb|ADZ17357.1| nuclear receptor TLX [Homo sapiens]
gi|355562170|gb|EHH18802.1| hypothetical protein EGK_15469 [Macaca mulatta]
gi|380816050|gb|AFE79899.1| nuclear receptor subfamily 2 group E member 1 [Macaca mulatta]
gi|380816052|gb|AFE79900.1| nuclear receptor subfamily 2 group E member 1 [Macaca mulatta]
Length = 385
Score = 68.6 bits (166), Expect = 5e-10, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 24 AYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPS 83
A + GS +R + AA+Q Q+ LN YIHT YP+QP RF K+ L+LP L+SI
Sbjct: 296 AVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISP 355
Query: 84 LVLEELFFRNIIGHNTTIKKTIWHMYKNA 112
+EE+FF+ IG N I + + MYK++
Sbjct: 356 STIEEVFFKKTIG-NVPITRLLSDMYKSS 383
>gi|197215627|gb|ACH53021.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Otolemur garnettii]
Length = 385
Score = 68.6 bits (166), Expect = 5e-10, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 24 AYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPS 83
A + GS +R + AA+Q Q+ LN YIHT YP+QP RF K+ L+LP L+SI
Sbjct: 296 AVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISP 355
Query: 84 LVLEELFFRNIIGHNTTIKKTIWHMYKNA 112
+EE+FF+ IG N I + + MYK++
Sbjct: 356 STIEEVFFKKTIG-NVPITRLLSDMYKSS 383
>gi|22726205|ref|NP_689415.1| nuclear receptor subfamily 2 group E member 1 [Mus musculus]
gi|6094489|sp|Q64104.1|NR2E1_MOUSE RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll; Short=mTll
gi|2143507|pir||I53158 orphan nuclear receptor homolog - mouse
gi|998678|gb|AAB34090.1| orphan nuclear receptor homolog [Mus sp.]
gi|21668101|gb|AAM74229.1| nuclear receptor 2E1 [Mus musculus]
gi|34849469|gb|AAH57104.1| Nuclear receptor subfamily 2, group E, member 1 [Mus musculus]
gi|74205430|dbj|BAE21029.1| unnamed protein product [Mus musculus]
gi|148673056|gb|EDL05003.1| nuclear receptor subfamily 2, group E, member 1 [Mus musculus]
Length = 385
Score = 68.6 bits (166), Expect = 5e-10, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 24 AYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPS 83
A + GS +R + AA+Q Q+ LN YIHT YP+QP RF K+ L+LP L+SI
Sbjct: 296 AVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISP 355
Query: 84 LVLEELFFRNIIGHNTTIKKTIWHMYKNA 112
+EE+FF+ IG N I + + MYK++
Sbjct: 356 STIEEVFFKKTIG-NVPITRLLSDMYKSS 383
>gi|395816268|ref|XP_003781627.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Otolemur
garnettii]
Length = 385
Score = 68.6 bits (166), Expect = 5e-10, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 24 AYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPS 83
A + GS +R + AA+Q Q+ LN YIHT YP+QP RF K+ L+LP L+SI
Sbjct: 296 AVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISP 355
Query: 84 LVLEELFFRNIIGHNTTIKKTIWHMYKNA 112
+EE+FF+ IG N I + + MYK++
Sbjct: 356 STIEEVFFKKTIG-NVPITRLLSDMYKSS 383
>gi|351702072|gb|EHB04991.1| Nuclear receptor subfamily 2 group E member 1 [Heterocephalus
glaber]
Length = 445
Score = 68.6 bits (166), Expect = 5e-10, Method: Composition-based stats.
Identities = 37/83 (44%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query: 30 GSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEEL 89
GS +R + AA+Q Q+ LN YIHT YP+QP RF K+ L+LP L+SI +EE+
Sbjct: 362 GSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEV 421
Query: 90 FFRNIIGHNTTIKKTIWHMYKNA 112
FF+ IG N I + + MYK++
Sbjct: 422 FFKKTIG-NVPITRLLSDMYKSS 443
>gi|301763932|ref|XP_002917384.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
E member 1-like [Ailuropoda melanoleuca]
Length = 380
Score = 68.2 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 24 AYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPS 83
A + GS +R + AA+Q Q+ LN YIHT YP+QP RF K+ L+LP L+SI
Sbjct: 291 AVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISP 350
Query: 84 LVLEELFFRNIIGHNTTIKKTIWHMYKNA 112
+EE+FF+ IG N I + + MYK++
Sbjct: 351 STIEEVFFKKTIG-NVPITRLLSDMYKSS 378
>gi|126310401|ref|XP_001368385.1| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Monodelphis domestica]
Length = 385
Score = 68.2 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 24 AYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPS 83
A + GS +R + AA+Q Q+ LN YIHT YP+QP RF K+ L+LP L+SI
Sbjct: 296 AVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISP 355
Query: 84 LVLEELFFRNIIGHNTTIKKTIWHMYKNA 112
+EE+FF+ IG N I + + MYK++
Sbjct: 356 STIEEVFFKKTIG-NVPITRLLSDMYKSS 383
>gi|344242733|gb|EGV98836.1| Nuclear receptor subfamily 2 group E member 1 [Cricetulus griseus]
Length = 323
Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 24 AYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPS 83
A + GS +R + AA+Q Q+ LN YIHT YP+QP RF K+ L+LP L+SI
Sbjct: 234 AVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISP 293
Query: 84 LVLEELFFRNIIGHNTTIKKTIWHMYKNA 112
+EE+FF+ IG N I + + MYK++
Sbjct: 294 STIEEVFFKKTIG-NVPITRLLSDMYKSS 321
>gi|397507811|ref|XP_003824377.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Pan
paniscus]
Length = 385
Score = 68.2 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 24 AYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPS 83
A + GS +R + AA+Q Q+ LN YIHT YP+QP RF K+ L+LP L+SI
Sbjct: 296 AVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISP 355
Query: 84 LVLEELFFRNIIGHNTTIKKTIWHMYKNA 112
+EE+FF+ IG N I + + MYK++
Sbjct: 356 STIEEVFFKKTIG-NVPITRLLSDMYKSS 383
>gi|443724903|gb|ELU12704.1| hypothetical protein CAPTEDRAFT_226190 [Capitella teleta]
Length = 393
Score = 68.2 bits (165), Expect = 6e-10, Method: Composition-based stats.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
A+Q Q+ L KYI + YP+QP RF K+ L+LP+L+SI +EELFF+ IG N I++
Sbjct: 324 ALQDQAQLTLGKYIQSSYPTQPFRFGKLLLMLPQLRSISGQTIEELFFKKTIG-NIPIER 382
Query: 104 TIWHMYKNA 112
+ MYK++
Sbjct: 383 LMVDMYKSS 391
>gi|327261729|ref|XP_003215681.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Anolis carolinensis]
Length = 382
Score = 68.2 bits (165), Expect = 6e-10, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 24 AYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPS 83
A + GS +R + AA+Q Q+ LN YIHT YP+QP RF K+ L+LP L+SI
Sbjct: 293 AVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISP 352
Query: 84 LVLEELFFRNIIGHNTTIKKTIWHMYKNA 112
+EE+FF+ IG N I + + MYK++
Sbjct: 353 STIEEVFFKKTIG-NVPITRLLSDMYKSS 380
>gi|410959792|ref|XP_003986483.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Felis
catus]
Length = 422
Score = 68.2 bits (165), Expect = 6e-10, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 24 AYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPS 83
A + GS +R + AA+Q Q+ LN YIHT YP+QP RF K+ L+LP L+SI
Sbjct: 333 AVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISP 392
Query: 84 LVLEELFFRNIIGHNTTIKKTIWHMYKNA 112
+EE+FF+ IG N I + + MYK++
Sbjct: 393 STIEEVFFKKTIG-NVPITRLLSDMYKSS 420
>gi|345325277|ref|XP_003430902.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Ornithorhynchus anatinus]
Length = 337
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 63/112 (56%), Gaps = 3/112 (2%)
Query: 1 MFQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTV 60
+F + I + N+ L + + + GS +R + AA+Q Q+ LN YIHT
Sbjct: 227 LFVLGIAQWAIPVDANTLLAV--SVPTHSGSELRSFGNAAAIAALQDEAQLTLNSYIHTR 284
Query: 61 YPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 112
YP+QP RF K+ L+LP L+SI +EE+FF+ IG N I + + MYK++
Sbjct: 285 YPTQPCRFGKLLLLLPALRSIGPSTIEEVFFKKTIG-NVPITRLLSDMYKSS 335
>gi|163954969|ref|NP_001106668.1| nuclear receptor subfamily 2, group E, member 1 [Rattus norvegicus]
gi|163658507|gb|ABY28383.1| tailless-like protein [Rattus norvegicus]
Length = 385
Score = 68.2 bits (165), Expect = 6e-10, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 24 AYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPS 83
A + GS +R + AA+Q Q+ LN YIHT YP+QP RF K+ L+LP L+SI
Sbjct: 296 AVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISP 355
Query: 84 LVLEELFFRNIIGHNTTIKKTIWHMYKNA 112
+EE+FF+ IG N I + + MYK++
Sbjct: 356 STIEEVFFKKTIG-NVPITRLLSDMYKSS 383
>gi|431838686|gb|ELK00616.1| Nuclear receptor subfamily 2 group E member 1 [Pteropus alecto]
Length = 408
Score = 68.2 bits (165), Expect = 6e-10, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 24 AYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPS 83
A + GS +R + AA+Q Q+ LN YIHT YP+QP RF K+ L+LP L+SI
Sbjct: 319 AVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISP 378
Query: 84 LVLEELFFRNIIGHNTTIKKTIWHMYKNA 112
+EE+FF+ IG N I + + MYK++
Sbjct: 379 STIEEVFFKKTIG-NVPITRLLSDMYKSS 406
>gi|120974938|gb|ABM46767.1| NR2E1 [Gorilla gorilla]
Length = 88
Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query: 30 GSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEEL 89
GS +R + AA+Q Q+ LN YIHT YP+QP RF K+ L+LP L+SI +EE+
Sbjct: 5 GSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEV 64
Query: 90 FFRNIIGHNTTIKKTIWHMYKNA 112
FF+ IG N I + + MYK++
Sbjct: 65 FFKKTIG-NVPITRLLSDMYKSS 86
>gi|296198939|ref|XP_002746955.1| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Callithrix jacchus]
Length = 386
Score = 67.8 bits (164), Expect = 8e-10, Method: Composition-based stats.
Identities = 37/86 (43%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Query: 27 SRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVL 86
+ GS +R + AA+Q Q+ LN YIHT YP+QP RF K+ L+LP L+SI +
Sbjct: 300 THSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTI 359
Query: 87 EELFFRNIIGHNTTIKKTIWHMYKNA 112
EE+FF+ IG N I + + MYK++
Sbjct: 360 EEVFFKKTIG-NVPITRLLSDMYKSS 384
>gi|57525699|ref|NP_001003608.1| nuclear receptor subfamily 2 group E member 1 [Danio rerio]
gi|50418146|gb|AAH77146.1| Nuclear receptor subfamily 2, group E, member 1 [Danio rerio]
gi|116517486|gb|ABJ99095.1| nuclear receptor subfamily 2 group E member 1 [Danio rerio]
Length = 396
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 24 AYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPS 83
A + GS +R + AA+Q Q+ LN YIHT YP+QP RF K+ L+LP L+S+
Sbjct: 307 AVPTHSGSELRSFRNASAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSVGP 366
Query: 84 LVLEELFFRNIIGHNTTIKKTIWHMYKNA 112
+EE+FF+ IG N I + + MYK++
Sbjct: 367 STIEEVFFKKTIG-NVPITRLLSDMYKSS 394
>gi|147904762|ref|NP_001079280.1| nuclear receptor subfamily 2 group E member 1 [Xenopus laevis]
gi|6094490|sp|P70052.1|NR2E1_XENLA RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll; Short=xTLL
gi|1527203|gb|AAB07732.1| orphan nuclear receptor XTLL [Xenopus laevis]
Length = 386
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 61/109 (55%), Gaps = 7/109 (6%)
Query: 4 TELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPS 63
TE L+ + + + ++ GS +R + +A+Q Q+ LN YIHT YP+
Sbjct: 283 TEFACLKCI------VTFKAGVSTHSGSELRNFRNAAAISALQDEAQLTLNSYIHTRYPT 336
Query: 64 QPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 112
QP RF K+ L+LP L+SI +EE+FF+ IG N I + + MYK++
Sbjct: 337 QPCRFGKLLLLLPALRSINPSTIEEVFFKKTIG-NVPITRVLSDMYKSS 384
>gi|301615499|ref|XP_002937209.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
E member 1-like [Xenopus (Silurana) tropicalis]
Length = 405
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query: 30 GSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEEL 89
GS +R + AA+Q Q+ LN YIHT YP+QP RF K+ L+LP L+SI +EE+
Sbjct: 322 GSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSINPSTIEEV 381
Query: 90 FFRNIIGHNTTIKKTIWHMYKNA 112
FF+ IG N I + + MYK++
Sbjct: 382 FFKKTIG-NVPITRLLSDMYKSS 403
>gi|297678833|ref|XP_002817264.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Pongo
abelii]
Length = 385
Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 37/89 (41%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 24 AYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPS 83
A + GS +R + AA+Q Q+ LN YIH YP+QP RF K+ L+LP L+SI
Sbjct: 296 AVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHNRYPTQPCRFGKLLLLLPALRSISP 355
Query: 84 LVLEELFFRNIIGHNTTIKKTIWHMYKNA 112
+EE+FF+ IG N I + + MYK++
Sbjct: 356 STIEEVFFKKTIG-NVPITRLLSDMYKSS 383
>gi|348524799|ref|XP_003449910.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
isoform 1 [Oreochromis niloticus]
Length = 396
Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Query: 43 AAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIK 102
AA+Q Q+ LN YIHT YP+QP RF K+ L+LP L+S+ +EE+FF+ IG N I
Sbjct: 326 AALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSVSPSTIEEVFFKKTIG-NVPIT 384
Query: 103 KTIWHMYKNA 112
+ + MYK++
Sbjct: 385 RLLSDMYKSS 394
>gi|348524801|ref|XP_003449911.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
isoform 2 [Oreochromis niloticus]
Length = 385
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Query: 43 AAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIK 102
AA+Q Q+ LN YIHT YP+QP RF K+ L+LP L+S+ +EE+FF+ IG N I
Sbjct: 315 AALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSVSPSTIEEVFFKKTIG-NVPIT 373
Query: 103 KTIWHMYKNA 112
+ + MYK++
Sbjct: 374 RLLSDMYKSS 383
>gi|410916893|ref|XP_003971921.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
isoform 2 [Takifugu rubripes]
gi|21538834|gb|AAM61763.1|AF461063_2 nuclear receptor 2E1 [Takifugu rubripes]
Length = 396
Score = 64.3 bits (155), Expect = 9e-09, Method: Composition-based stats.
Identities = 36/89 (40%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 24 AYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPS 83
A ++ + +R + AA+Q Q+ LN YIHT YP+QP RF K+ L+LP L SI
Sbjct: 307 AVPTQGNAEIRSFRNASAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPSLHSISP 366
Query: 84 LVLEELFFRNIIGHNTTIKKTIWHMYKNA 112
+EE+FF+ IG N I + + MYK++
Sbjct: 367 STIEEVFFKKTIG-NVPITRLLSDMYKSS 394
>gi|47224633|emb|CAG03617.1| unnamed protein product [Tetraodon nigroviridis]
Length = 393
Score = 64.3 bits (155), Expect = 9e-09, Method: Composition-based stats.
Identities = 34/82 (41%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 31 SRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELF 90
+ +R + AA+Q Q+ LN YIHT YP+QP RF K+ L+LP L+S+ +EE+F
Sbjct: 311 AEIRSFRNASAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPSLRSVSPSTIEEVF 370
Query: 91 FRNIIGHNTTIKKTIWHMYKNA 112
F+ IG N I + + MYK++
Sbjct: 371 FKKTIG-NVPITRLLSDMYKSS 391
>gi|410916891|ref|XP_003971920.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
isoform 1 [Takifugu rubripes]
Length = 385
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 36/89 (40%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 24 AYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPS 83
A ++ + +R + AA+Q Q+ LN YIHT YP+QP RF K+ L+LP L SI
Sbjct: 296 AVPTQGNAEIRSFRNASAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPSLHSISP 355
Query: 84 LVLEELFFRNIIGHNTTIKKTIWHMYKNA 112
+EE+FF+ IG N I + + MYK++
Sbjct: 356 STIEEVFFKKTIG-NVPITRLLSDMYKSS 383
>gi|157278483|ref|NP_001098343.1| nuclear receptor subfamily 2 group E member 1 [Oryzias latipes]
gi|9910805|sp|Q9YGL3.1|NR2E1_ORYLA RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll
gi|4468637|emb|CAB38085.1| tailless [Oryzias latipes]
Length = 396
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Query: 43 AAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIK 102
AA+Q Q+ LN YIHT YP+QP RF K+ L+LP L+S+ +EE+FF+ IG N I
Sbjct: 326 AALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSVSPSTIEEVFFKKNIG-NVPIT 384
Query: 103 KTIWHMYKNA 112
+ + MYK++
Sbjct: 385 RLLSDMYKSS 394
>gi|405978560|gb|EKC42940.1| Nuclear receptor subfamily 2 group E member 1 [Crassostrea gigas]
Length = 380
Score = 60.8 bits (146), Expect = 9e-08, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 43 AAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIK 102
A +Q Q+ L+KYI YP+QP RF K+ L +P LK++ + ELFFR IG N I+
Sbjct: 310 AGLQDQAQLTLSKYIQATYPTQPFRFGKLLLSIPTLKTVCGNTIAELFFRKTIG-NIPIE 368
Query: 103 KTIWHMYKNA 112
+ + M+K++
Sbjct: 369 RLLIDMFKSS 378
>gi|321478244|gb|EFX89201.1| tailless-like protein [Daphnia pulex]
Length = 337
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q Q+ L++Y+ T YP+QP RF ++ L+LP L++I +EELFFR IG N I++
Sbjct: 269 LQDQAQLTLSRYVSTAYPNQPLRFGRLLLLLPALRTIAPSTIEELFFRKTIG-NIPIERI 327
Query: 105 IWHMYKNA 112
I MYK+
Sbjct: 328 ISDMYKSG 335
>gi|441617194|ref|XP_004088427.1| PREDICTED: LOW QUALITY PROTEIN: photoreceptor-specific nuclear
receptor [Nomascus leucogenys]
Length = 562
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
A+Q +Q+ L+++ +PSQP RF K+ L LP L+ I + +E LFFR IG NT ++K
Sbjct: 496 ALQDQSQVMLSQHSKAHHPSQPVRFGKLLLXLPSLRFITAERIELLFFRKTIG-NTPMEK 554
Query: 104 TIWHMYKN 111
+ M+KN
Sbjct: 555 LLCDMFKN 562
>gi|242024443|ref|XP_002432637.1| Orphan nuclear receptor NR6A1, putative [Pediculus humanus
corporis]
gi|212518107|gb|EEB19899.1| Orphan nuclear receptor NR6A1, putative [Pediculus humanus
corporis]
Length = 438
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q Q L YI YP QPTRF ++ LILP L+SI L +E+LFF+ IG I++
Sbjct: 372 LQDQAQCILGDYIRNRYPRQPTRFGRLLLILPNLRSIRQLTVEQLFFKETIGE-IPIQRL 430
Query: 105 IWHMY 109
+ MY
Sbjct: 431 LGDMY 435
>gi|242004528|ref|XP_002423135.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212506081|gb|EEB10397.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 467
Score = 57.8 bits (138), Expect = 9e-07, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q Q+ L ++ +P+QP RF ++ L++P LK +P+ +E +FF+ IG NT ++K
Sbjct: 402 LQDQAQVMLGQHARGQHPTQPARFGRLLLMIPLLKHVPTQRVEHIFFQRTIG-NTPMEKV 460
Query: 105 IWHMYKN 111
+ MYKN
Sbjct: 461 LCDMYKN 467
>gi|432861654|ref|XP_004069672.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Oryzias
latipes]
Length = 416
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q +Q+ L ++I++ YP+Q TRF ++ L+LP L + S + +LFF+ IG NT ++K
Sbjct: 351 LQDQSQVLLGQHIYSAYPNQSTRFGRMLLLLPSLHFVSSAKIGQLFFQRTIG-NTPMEKL 409
Query: 105 IWHMYKN 111
+ M+KN
Sbjct: 410 LCDMFKN 416
>gi|348505631|ref|XP_003440364.1| PREDICTED: photoreceptor-specific nuclear receptor-like
[Oreochromis niloticus]
Length = 421
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q +Q+ L ++IH+VYP+Q RF ++ L+LP L+ + S + +LFF+ IG +T ++K
Sbjct: 356 LQDQSQVLLGQHIHSVYPNQGARFGRLILLLPSLRFVNSEKIAKLFFQRTIG-STPMEKL 414
Query: 105 IWHMYKN 111
+ M+KN
Sbjct: 415 LCDMFKN 421
>gi|346456835|dbj|BAK78983.1| COUP-TF homolog [Lethenteron camtschaticum]
Length = 408
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 330 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 388
Query: 104 TIWHM 108
I M
Sbjct: 389 LIRDM 393
>gi|45383323|ref|NP_989752.1| COUP transcription factor 2 [Gallus gallus]
gi|3913114|sp|Q90733.1|COT2_CHICK RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=COUP transcription factor II; Short=COUP-TF II;
AltName: Full=Nuclear receptor subfamily 2 group F
member 2
gi|392817|gb|AAA17733.1| orphan receptor COUP-TFII [Gallus gallus]
Length = 410
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 332 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 390
Query: 104 TIWHM 108
I M
Sbjct: 391 LIRDM 395
>gi|334318448|ref|XP_003340091.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 2-like
[Monodelphis domestica]
gi|395502495|ref|XP_003755615.1| PREDICTED: COUP transcription factor 2 isoform 1 [Sarcophilus
harrisii]
Length = 411
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 333 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 391
Query: 104 TIWHM 108
I M
Sbjct: 392 LIRDM 396
>gi|310703613|ref|NP_001185508.1| COUP transcription factor 2 [Taeniopygia guttata]
Length = 410
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 332 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 390
Query: 104 TIWHM 108
I M
Sbjct: 391 LIRDM 395
>gi|55925261|ref|NP_001007369.1| photoreceptor-specific nuclear receptor [Danio rerio]
gi|55250124|gb|AAH85568.1| Zgc:103631 [Danio rerio]
gi|182889208|gb|AAI64789.1| Zgc:103631 protein [Danio rerio]
Length = 419
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q +Q+ L ++IHT+YPSQ RF ++ L+LP L + S +E LFF+ IG NT ++K
Sbjct: 354 LQDQSQVLLAQHIHTLYPSQVARFGRLLLLLPSLHFVSSERIEHLFFQRTIG-NTPMEKL 412
Query: 105 IWHMYKN 111
+ M+KN
Sbjct: 413 LCDMFKN 419
>gi|442618705|ref|NP_001262499.1| seven up, isoform E [Drosophila melanogaster]
gi|440217344|gb|AGB95881.1| seven up, isoform E [Drosophila melanogaster]
Length = 554
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y T YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 465 SLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIET 523
Query: 104 TIWHM 108
I M
Sbjct: 524 LIRDM 528
>gi|21744271|gb|AAM76194.1| RE08410p [Drosophila melanogaster]
gi|220947910|gb|ACL86498.1| svp-PC [synthetic construct]
gi|220957212|gb|ACL91149.1| svp-PC [synthetic construct]
Length = 543
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y T YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 465 SLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIET 523
Query: 104 TIWHM 108
I M
Sbjct: 524 LIRDM 528
>gi|17737921|ref|NP_524325.1| seven up, isoform B [Drosophila melanogaster]
gi|112858|sp|P16375.1|7UP1_DROME RecName: Full=Steroid receptor seven-up, isoforms B/C; AltName:
Full=Nuclear receptor subfamily 2 group F member 3,
isoforms B/C
gi|158519|gb|AAA62770.1| seven-up protein type 1 [Drosophila melanogaster]
gi|7299588|gb|AAF54773.1| seven up, isoform B [Drosophila melanogaster]
Length = 543
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y T YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 465 SLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIET 523
Query: 104 TIWHM 108
I M
Sbjct: 524 LIRDM 528
>gi|198454165|ref|XP_001359502.2| GA11038 [Drosophila pseudoobscura pseudoobscura]
gi|198132680|gb|EAL28648.2| GA11038 [Drosophila pseudoobscura pseudoobscura]
Length = 777
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y T YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 461 SLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIET 519
Query: 104 TIWHM 108
I M
Sbjct: 520 LIRDM 524
>gi|195571509|ref|XP_002103745.1| GD18809 [Drosophila simulans]
gi|194199672|gb|EDX13248.1| GD18809 [Drosophila simulans]
Length = 680
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y T YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 465 SLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIET 523
Query: 104 TIWHM 108
I M
Sbjct: 524 LIRDM 528
>gi|195443622|ref|XP_002069499.1| GK11542 [Drosophila willistoni]
gi|194165584|gb|EDW80485.1| GK11542 [Drosophila willistoni]
Length = 835
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y T YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 463 SLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIET 521
Query: 104 TIWHM 108
I M
Sbjct: 522 LIRDM 526
>gi|195396200|ref|XP_002056720.1| GJ11090 [Drosophila virilis]
gi|194143429|gb|EDW59832.1| GJ11090 [Drosophila virilis]
Length = 787
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y T YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 460 SLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIET 518
Query: 104 TIWHM 108
I M
Sbjct: 519 LIRDM 523
>gi|195329610|ref|XP_002031503.1| GM24010 [Drosophila sechellia]
gi|194120446|gb|EDW42489.1| GM24010 [Drosophila sechellia]
Length = 1085
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y T YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 760 SLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIET 818
Query: 104 TIWHM 108
I M
Sbjct: 819 LIRDM 823
>gi|194901808|ref|XP_001980443.1| GG18706 [Drosophila erecta]
gi|195500393|ref|XP_002097354.1| GE26169 [Drosophila yakuba]
gi|190652146|gb|EDV49401.1| GG18706 [Drosophila erecta]
gi|194183455|gb|EDW97066.1| GE26169 [Drosophila yakuba]
Length = 543
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y T YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 465 SLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIET 523
Query: 104 TIWHM 108
I M
Sbjct: 524 LIRDM 528
>gi|194741798|ref|XP_001953374.1| GF17240 [Drosophila ananassae]
gi|190626433|gb|EDV41957.1| GF17240 [Drosophila ananassae]
Length = 826
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y T YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 470 SLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIET 528
Query: 104 TIWHM 108
I M
Sbjct: 529 LIRDM 533
>gi|149410809|ref|XP_001508281.1| PREDICTED: COUP transcription factor 2 [Ornithorhynchus anatinus]
Length = 411
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 333 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 391
Query: 104 TIWHM 108
I M
Sbjct: 392 LIRDM 396
>gi|14090242|dbj|BAB55582.1| seven-up alpha [Bombyx mori]
Length = 421
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y T YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 343 SLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIET 401
Query: 104 TIWHM 108
I M
Sbjct: 402 LIRDM 406
>gi|395502499|ref|XP_003755617.1| PREDICTED: COUP transcription factor 2 isoform 3 [Sarcophilus
harrisii]
Length = 418
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 340 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 398
Query: 104 TIWHM 108
I M
Sbjct: 399 LIRDM 403
>gi|197129927|gb|ACH46425.1| putative nuclear receptor subfamily 2 group F member 2 [Taeniopygia
guttata]
Length = 410
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 332 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 390
Query: 104 TIWHM 108
I M
Sbjct: 391 LIRDM 395
>gi|195152898|ref|XP_002017373.1| GL22274 [Drosophila persimilis]
gi|194112430|gb|EDW34473.1| GL22274 [Drosophila persimilis]
Length = 777
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y T YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 461 SLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIET 519
Query: 104 TIWHM 108
I M
Sbjct: 520 LIRDM 524
>gi|116517488|gb|ABJ99096.1| nuclear receptor subfamily 2 group E member 3 [Danio rerio]
Length = 348
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q +Q+ L ++IHT+YPSQ RF ++ L+LP L + S +E LFF+ IG NT ++K
Sbjct: 283 LQDQSQVLLAQHIHTLYPSQVARFGRLLLLLPSLHFVSSERIEHLFFQRTIG-NTPMEKL 341
Query: 105 IWHMYKN 111
+ M+KN
Sbjct: 342 LCDMFKN 348
>gi|195111960|ref|XP_002000544.1| GI10282 [Drosophila mojavensis]
gi|193917138|gb|EDW16005.1| GI10282 [Drosophila mojavensis]
Length = 812
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y T YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 461 SLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIET 519
Query: 104 TIWHM 108
I M
Sbjct: 520 LIRDM 524
>gi|380796215|gb|AFE69983.1| COUP transcription factor 1, partial [Macaca mulatta]
Length = 383
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 303 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 361
Query: 104 TIWHM 108
I M
Sbjct: 362 LIRDM 366
>gi|405977938|gb|EKC42362.1| Nuclear receptor subfamily 2 group F member 1-A [Crassostrea gigas]
Length = 435
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
IQ +Q L +Y+ + YP+QPTRF K+ L LP L+++ + V+E+LFF ++G T I+
Sbjct: 358 IQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSAQVIEQLFFVRLVG-KTPIETL 416
Query: 105 IWHMYKNAG 113
I M + G
Sbjct: 417 IRDMLLSGG 425
>gi|395747169|ref|XP_003778564.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 2 [Pongo
abelii]
Length = 414
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 336 SLQEKSQCXLEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 394
Query: 104 TIWHM 108
I M
Sbjct: 395 LIRDM 399
>gi|158253732|gb|AAI54181.1| Zgc:103631 protein [Danio rerio]
Length = 344
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q +Q+ L ++IHT+YPSQ RF ++ L+LP L + S +E LFF+ IG NT ++K
Sbjct: 279 LQDQSQVLLAQHIHTLYPSQVARFGRLLLLLPSLHFVSSERIEHLFFQRTIG-NTPMEKL 337
Query: 105 IWHMYKN 111
+ M+KN
Sbjct: 338 LCDMFKN 344
>gi|405978561|gb|EKC42941.1| Nuclear receptor subfamily 2 group E member 1 [Crassostrea gigas]
Length = 388
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 33/74 (44%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 39 SKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHN 98
S A +Q Q+ L+KYI + YPSQP RF K+ L+LP L+++ S V+E++FF+ IGH
Sbjct: 314 SHAVALLQDQAQVTLSKYIESTYPSQPFRFGKLLLLLPLLQTVSSKVIEDIFFKRTIGH- 372
Query: 99 TTIKKTIWHMYKNA 112
I K I M+K+
Sbjct: 373 VPIDKLIVDMFKSG 386
>gi|482928|emb|CAA54096.1| ARP-1 [Mus musculus]
Length = 414
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 336 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 394
Query: 104 TIWHM 108
I M
Sbjct: 395 LIRDM 399
>gi|391330852|ref|XP_003739866.1| PREDICTED: photoreceptor-specific nuclear receptor-like
[Metaseiulus occidentalis]
Length = 467
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
A+Q Q+ L +++ + +P+ P RF ++ L+LP L+++ S +E LFF+ IIG +T ++K
Sbjct: 401 ALQDQAQLMLQQHVRSQHPTHPVRFGRLLLMLPSLRTVSSDKIESLFFQKIIG-STPMEK 459
Query: 104 TIWHMYK 110
+ M+K
Sbjct: 460 LLCDMFK 466
>gi|27806025|ref|NP_776827.1| COUP transcription factor 2 [Bos taurus]
gi|10719969|sp|Q9TTR7.1|COT2_BOVIN RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=COUP transcription factor II; Short=COUP-TF II;
AltName: Full=Nuclear receptor subfamily 2 group F
member 2
gi|5870338|emb|CAB55624.1| COUP-TFII transcription factor [Bos taurus]
gi|115305372|gb|AAI23678.1| Nuclear receptor subfamily 2, group F, member 2 [Bos taurus]
gi|296475581|tpg|DAA17696.1| TPA: COUP transcription factor 2 [Bos taurus]
Length = 414
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 336 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 394
Query: 104 TIWHM 108
I M
Sbjct: 395 LIRDM 399
>gi|441616846|ref|XP_004088402.1| PREDICTED: COUP transcription factor 2 [Nomascus leucogenys]
Length = 422
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 344 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 402
Query: 104 TIWHM 108
I M
Sbjct: 403 LIRDM 407
>gi|28974300|gb|AAO61416.1| COUP-TF [Branchiostoma floridae]
Length = 443
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 365 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 423
Query: 104 TIWHM 108
I M
Sbjct: 424 LIRDM 428
>gi|166796001|ref|NP_001107703.1| nuclear receptor subfamily 2, group F, member 2 [Xenopus (Silurana)
tropicalis]
gi|163916021|gb|AAI57200.1| nr2f2 protein [Xenopus (Silurana) tropicalis]
Length = 408
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 330 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 388
Query: 104 TIWHM 108
I M
Sbjct: 389 LIRDM 393
>gi|147901133|ref|NP_001080488.1| nuclear receptor subfamily 2, group F, member 2 [Xenopus laevis]
gi|27924187|gb|AAH44975.1| Nr2f2 protein [Xenopus laevis]
Length = 405
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 327 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 385
Query: 104 TIWHM 108
I M
Sbjct: 386 LIRDM 390
>gi|410049651|ref|XP_003952785.1| PREDICTED: COUP transcription factor 2 [Pan troglodytes]
Length = 421
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 343 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 401
Query: 104 TIWHM 108
I M
Sbjct: 402 LIRDM 406
>gi|383855696|ref|XP_003703346.1| PREDICTED: steroid receptor seven-up, isoforms B/C-like [Megachile
rotundata]
Length = 394
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y T YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 316 SLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIET 374
Query: 104 TIWHM 108
I M
Sbjct: 375 LIRDM 379
>gi|301777570|ref|XP_002924203.1| PREDICTED: COUP transcription factor 2-like [Ailuropoda
melanoleuca]
Length = 383
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 305 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 363
Query: 104 TIWHM 108
I M
Sbjct: 364 LIRDM 368
>gi|298228993|ref|NP_001177181.1| COUP transcription factor 2 isoform 1 [Sus scrofa]
gi|344284391|ref|XP_003413951.1| PREDICTED: COUP transcription factor 2 isoform 1 [Loxodonta
africana]
gi|345798235|ref|XP_849497.2| PREDICTED: COUP transcription factor 2 isoform 2 [Canis lupus
familiaris]
gi|348579089|ref|XP_003475314.1| PREDICTED: COUP transcription factor 2 [Cavia porcellus]
Length = 414
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 336 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 394
Query: 104 TIWHM 108
I M
Sbjct: 395 LIRDM 399
>gi|18158445|ref|NP_542956.1| COUP transcription factor 2 [Rattus norvegicus]
gi|3913096|sp|O09018.1|COT2_RAT RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=Apolipoprotein A-I regulatory protein 1;
Short=ARP-1; AltName: Full=COUP transcription factor II;
Short=COUP-TF II; AltName: Full=COUPb; AltName:
Full=Nuclear receptor subfamily 2 group F member 2;
AltName: Full=Ovalbumin upstream promoter beta nuclear
receptor
gi|2197125|gb|AAB61297.1| ovalbumin upstream promoter beta nuclear receptor rCOUPb [Rattus
norvegicus]
gi|149057164|gb|EDM08487.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_a
[Rattus norvegicus]
Length = 414
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 336 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 394
Query: 104 TIWHM 108
I M
Sbjct: 395 LIRDM 399
>gi|60654339|gb|AAX29860.1| nuclear receptor subfamily 2 group F member 2 [synthetic construct]
Length = 415
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 336 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 394
Query: 104 TIWHM 108
I M
Sbjct: 395 LIRDM 399
>gi|14149746|ref|NP_066285.1| COUP transcription factor 2 isoform a [Homo sapiens]
gi|45598394|ref|NP_033827.2| COUP transcription factor 2 isoform 1 [Mus musculus]
gi|109082429|ref|XP_001099957.1| PREDICTED: COUP transcription factor 2 isoform 4 [Macaca mulatta]
gi|114659046|ref|XP_001135545.1| PREDICTED: COUP transcription factor 2 isoform 4 [Pan troglodytes]
gi|296203984|ref|XP_002749136.1| PREDICTED: COUP transcription factor 2 [Callithrix jacchus]
gi|332238780|ref|XP_003268580.1| PREDICTED: COUP transcription factor 2 isoform 2 [Nomascus
leucogenys]
gi|395831197|ref|XP_003788693.1| PREDICTED: COUP transcription factor 2 [Otolemur garnettii]
gi|402875344|ref|XP_003901468.1| PREDICTED: COUP transcription factor 2 [Papio anubis]
gi|426380391|ref|XP_004056850.1| PREDICTED: COUP transcription factor 2 [Gorilla gorilla gorilla]
gi|114203|sp|P24468.1|COT2_HUMAN RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=Apolipoprotein A-I regulatory protein 1;
Short=ARP-1; AltName: Full=COUP transcription factor II;
Short=COUP-TF II; AltName: Full=Nuclear receptor
subfamily 2 group F member 2
gi|46397833|sp|P43135.2|COT2_MOUSE RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=Apolipoprotein AI regulatory protein 1;
Short=ARP-1; AltName: Full=COUP transcription factor II;
Short=COUP-TF II; AltName: Full=Nuclear receptor
subfamily 2 group F member 2
gi|2137150|pir||I48975 apolipoprotein A-I regulatory protein 1 - mouse
gi|179024|gb|AAA86429.1| apolipoprotein AI regulatory protein-1 [Homo sapiens]
gi|466470|gb|AAA19854.1| COUP-TFII [Mus musculus]
gi|1575343|gb|AAB09475.1| apoliprotein AI regulatory protein-1 [Homo sapiens]
gi|15779213|gb|AAH14664.1| Nuclear receptor subfamily 2, group F, member 2 [Homo sapiens]
gi|27503725|gb|AAH42484.1| Nuclear receptor subfamily 2, group F, member 2 [Mus musculus]
gi|27781285|gb|AAH42897.1| Nuclear receptor subfamily 2, group F, member 2 [Homo sapiens]
gi|61363669|gb|AAX42426.1| nuclear receptor subfamily 2 group F member 2 [synthetic construct]
gi|74148522|dbj|BAE24245.1| unnamed protein product [Mus musculus]
gi|119622600|gb|EAX02195.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_a
[Homo sapiens]
gi|119622603|gb|EAX02198.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_a
[Homo sapiens]
gi|216409730|dbj|BAH02302.1| ovalbumin upstream promoter transcription factor II [Homo sapiens]
gi|307685477|dbj|BAJ20669.1| nuclear receptor subfamily 2, group F, member 2 [synthetic
construct]
gi|325495507|gb|ADZ17359.1| chicken ovalbumin upstream promoter-transcription factor II variant
1 [Homo sapiens]
gi|410216134|gb|JAA05286.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410216138|gb|JAA05288.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410216140|gb|JAA05289.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410258704|gb|JAA17319.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410307120|gb|JAA32160.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410307122|gb|JAA32161.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410307126|gb|JAA32163.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410336357|gb|JAA37125.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410336359|gb|JAA37126.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
Length = 414
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 336 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 394
Query: 104 TIWHM 108
I M
Sbjct: 395 LIRDM 399
>gi|1703646|gb|AAB37686.1| xCOUP-TF-B=proposed retinoid receptor-mediated transcriptional
activation negative regulator [Xenopus, stage 17
embryos, Peptide, 405 aa]
Length = 405
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 327 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 385
Query: 104 TIWHM 108
I M
Sbjct: 386 LIRDM 390
>gi|281353714|gb|EFB29298.1| hypothetical protein PANDA_011329 [Ailuropoda melanoleuca]
Length = 391
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 38 GSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 97
G + A+Q +Q+ L+++ +PSQP RF K+ L+LP L+ I S +E LFFR IG
Sbjct: 319 GPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITSERVELLFFRKTIG- 377
Query: 98 NTTIKKTIWHMYKN 111
NT ++K + M+KN
Sbjct: 378 NTPMEKLLCDMFKN 391
>gi|355778322|gb|EHH63358.1| COUP transcription factor 2, partial [Macaca fascicularis]
Length = 352
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 274 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 332
Query: 104 TIWHM 108
I M
Sbjct: 333 LIRDM 337
>gi|440909469|gb|ELR59375.1| COUP transcription factor 2, partial [Bos grunniens mutus]
Length = 348
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 270 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 328
Query: 104 TIWHM 108
I M
Sbjct: 329 LIRDM 333
>gi|291232327|ref|XP_002736110.1| PREDICTED: tailless-like [Saccoglossus kowalevskii]
Length = 407
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q Q+ L Y+ Y QP RF K L+LP L+SI S LE LFFR+ IG + I++
Sbjct: 341 LQDQAQVMLGDYLRHQYARQPVRFGKCLLMLPSLRSISSRTLEMLFFRDTIG-SIPIERL 399
Query: 105 IWHMYKNA 112
+ M++N+
Sbjct: 400 LCDMFQNS 407
>gi|355693023|gb|EHH27626.1| COUP transcription factor 2, partial [Macaca mulatta]
Length = 380
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 302 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 360
Query: 104 TIWHM 108
I M
Sbjct: 361 LIRDM 365
>gi|195055334|ref|XP_001994574.1| GH17319 [Drosophila grimshawi]
gi|193892337|gb|EDV91203.1| GH17319 [Drosophila grimshawi]
Length = 542
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q +Q L +Y T YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 465 LQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIETL 523
Query: 105 IWHM 108
I M
Sbjct: 524 IRDM 527
>gi|432861725|ref|XP_004069707.1| PREDICTED: COUP transcription factor 2-like isoform 1 [Oryzias
latipes]
Length = 417
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 339 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 397
Query: 104 TIWHM 108
I M
Sbjct: 398 LIRDM 402
>gi|301773902|ref|XP_002922374.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Ailuropoda
melanoleuca]
Length = 483
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 38 GSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 97
G + A+Q +Q+ L+++ +PSQP RF K+ L+LP L+ I S +E LFFR IG
Sbjct: 411 GPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITSERVELLFFRKTIG- 469
Query: 98 NTTIKKTIWHMYKN 111
NT ++K + M+KN
Sbjct: 470 NTPMEKLLCDMFKN 483
>gi|432861727|ref|XP_004069708.1| PREDICTED: COUP transcription factor 2-like isoform 2 [Oryzias
latipes]
Length = 423
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 345 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 403
Query: 104 TIWHM 108
I M
Sbjct: 404 LIRDM 408
>gi|417409902|gb|JAA51440.1| Putative coup transcription factor 2 isoform 1, partial [Desmodus
rotundus]
Length = 346
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 268 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 326
Query: 104 TIWHM 108
I M
Sbjct: 327 LIRDM 331
>gi|281347624|gb|EFB23208.1| hypothetical protein PANDA_013481 [Ailuropoda melanoleuca]
Length = 357
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 279 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 337
Query: 104 TIWHM 108
I M
Sbjct: 338 LIRDM 342
>gi|47224170|emb|CAG13090.1| unnamed protein product [Tetraodon nigroviridis]
Length = 746
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 682 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 740
Query: 104 TIWHM 108
I M
Sbjct: 741 LIRDM 745
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 37/52 (71%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNII 95
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF +I
Sbjct: 301 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLI 352
>gi|431891667|gb|ELK02268.1| COUP transcription factor 2, partial [Pteropus alecto]
gi|432091002|gb|ELK24218.1| COUP transcription factor 2, partial [Myotis davidii]
Length = 343
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 265 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 323
Query: 104 TIWHM 108
I M
Sbjct: 324 LIRDM 328
>gi|91077386|ref|XP_975255.1| PREDICTED: similar to Dissatisfaction (Dsf) [Tribolium castaneum]
gi|270002823|gb|EEZ99270.1| dissatisfaction [Tribolium castaneum]
Length = 483
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q Q L Y+ T YP QPTRF ++ L++P L++I SL +E LFF+ IG I +
Sbjct: 410 LQDQAQCILGDYVRTRYPRQPTRFGRLLLLVPSLRAIRSLTVELLFFKETIGE-IPITQL 468
Query: 105 IWHMY 109
+ MY
Sbjct: 469 LGDMY 473
>gi|444730350|gb|ELW70737.1| COUP transcription factor 2 [Tupaia chinensis]
Length = 413
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 335 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 393
Query: 104 TIWHM 108
I M
Sbjct: 394 LIRDM 398
>gi|410907273|ref|XP_003967116.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 1 [Takifugu rubripes]
Length = 417
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 339 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 397
Query: 104 TIWHM 108
I M
Sbjct: 398 LIRDM 402
>gi|390335482|ref|XP_003724162.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A isoform
1 [Strongylocentrotus purpuratus]
gi|390335484|ref|XP_782295.3| PREDICTED: nuclear receptor subfamily 2 group F member 1-A isoform
2 [Strongylocentrotus purpuratus]
Length = 472
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
A+Q +Q L +Y+ + YP+QP RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 394 ALQEKSQCALEEYVRSQYPNQPNRFGKLLLRLPSLRTVSSHVIEQLFFVRLVG-KTPIET 452
Query: 104 TIWHM 108
I M
Sbjct: 453 LIRDM 457
>gi|348505805|ref|XP_003440451.1| PREDICTED: COUP transcription factor 2-like isoform 1 [Oreochromis
niloticus]
Length = 417
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 339 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 397
Query: 104 TIWHM 108
I M
Sbjct: 398 LIRDM 402
>gi|410907275|ref|XP_003967117.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 2 [Takifugu rubripes]
Length = 423
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 345 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 403
Query: 104 TIWHM 108
I M
Sbjct: 404 LIRDM 408
>gi|340729306|ref|XP_003402945.1| PREDICTED: steroid receptor seven-up, isoforms B/C-like [Bombus
terrestris]
Length = 400
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y T YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 322 SLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIET 380
Query: 104 TIWHM 108
I M
Sbjct: 381 LIRDM 385
>gi|348505807|ref|XP_003440452.1| PREDICTED: COUP transcription factor 2-like isoform 2 [Oreochromis
niloticus]
Length = 423
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 345 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 403
Query: 104 TIWHM 108
I M
Sbjct: 404 LIRDM 408
>gi|307204825|gb|EFN83383.1| Steroid receptor seven-up, isoforms B/C [Harpegnathos saltator]
Length = 458
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y T YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 394 SLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIET 452
Query: 104 TIWHM 108
I M
Sbjct: 453 LIRDM 457
>gi|327285350|ref|XP_003227397.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Anolis
carolinensis]
Length = 418
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q +Q+ L ++ YPSQP RF K+ L+LP LK I S +E LFFR IG NT ++K
Sbjct: 353 LQDQSQVMLGQHNQIHYPSQPVRFGKLLLLLPSLKFISSDRIELLFFRRTIG-NTPMEKL 411
Query: 105 IWHMYKN 111
+ M+KN
Sbjct: 412 LCDMFKN 418
>gi|91092158|ref|XP_967537.1| PREDICTED: similar to COUP-TF/Svp nuclear hormone receptor
[Tribolium castaneum]
gi|270015100|gb|EFA11548.1| seven up [Tribolium castaneum]
Length = 419
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
+IQ +Q L +Y + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 344 SIQEKSQCALEEYCRSQYPNQPTRFGKLLLRLPSLRTVSSAVIEQLFFVRLVG-KTPIET 402
Query: 104 TIWHM 108
I M
Sbjct: 403 LIRDM 407
>gi|328791488|ref|XP_392402.3| PREDICTED: steroid receptor seven-up, isoforms B/C, partial [Apis
mellifera]
Length = 344
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y T YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 266 SLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIET 324
Query: 104 TIWHM 108
I M
Sbjct: 325 LIRDM 329
>gi|440907586|gb|ELR57717.1| COUP transcription factor 1, partial [Bos grunniens mutus]
Length = 368
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 288 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 346
Query: 104 TIWHM 108
I M
Sbjct: 347 LIRDM 351
>gi|13592107|ref|NP_112392.1| nuclear receptor subfamily 2, group F, member 1 [Rattus norvegicus]
gi|506762|gb|AAA83437.1| orphan receptor COUP-TFI [Rattus norvegicus]
Length = 419
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 339 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 397
Query: 104 TIWHM 108
I M
Sbjct: 398 LIRDM 402
>gi|111185902|ref|NP_034281.2| COUP transcription factor 1 [Mus musculus]
gi|466468|gb|AAA19853.1| COUP-TFI [Mus musculus]
gi|80478748|gb|AAI08409.1| Nuclear receptor subfamily 2, group F, member 1 [Mus musculus]
Length = 420
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 340 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 398
Query: 104 TIWHM 108
I M
Sbjct: 399 LIRDM 403
>gi|2500905|sp|Q60632.2|COT1_MOUSE RecName: Full=COUP transcription factor 1; Short=COUP-TF1; AltName:
Full=COUP transcription factor I; Short=COUP-TF I;
AltName: Full=Nuclear receptor subfamily 2 group F
member 1; AltName: Full=V-erbA-related protein 3;
Short=EAR-3
gi|695627|emb|CAA52231.1| COUP-TF1 [Mus musculus]
Length = 422
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 342 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 400
Query: 104 TIWHM 108
I M
Sbjct: 401 LIRDM 405
>gi|30140|emb|CAA34277.1| COUP-TF [Homo sapiens]
gi|226405|prf||1510304A COUP transcription factor
Length = 418
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 338 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 396
Query: 104 TIWHM 108
I M
Sbjct: 397 LIRDM 401
>gi|395511284|ref|XP_003759890.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Sarcophilus harrisii]
Length = 416
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 336 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 394
Query: 104 TIWHM 108
I M
Sbjct: 395 LIRDM 399
>gi|363744735|ref|XP_003643114.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Gallus gallus]
Length = 418
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 338 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 396
Query: 104 TIWHM 108
I M
Sbjct: 397 LIRDM 401
>gi|344265387|ref|XP_003404766.1| PREDICTED: hypothetical protein LOC100660824 [Loxodonta africana]
Length = 1396
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 1316 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 1374
Query: 104 TIWHM 108
I M
Sbjct: 1375 LIRDM 1379
>gi|334325755|ref|XP_003340678.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
F member 1-A-like [Monodelphis domestica]
Length = 416
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 336 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 394
Query: 104 TIWHM 108
I M
Sbjct: 395 LIRDM 399
>gi|332224991|ref|XP_003261656.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1
[Nomascus leucogenys]
Length = 423
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 343 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 401
Query: 104 TIWHM 108
I M
Sbjct: 402 LIRDM 406
>gi|325495569|gb|ADZ17390.1| chicken ovalbumin upstream promoter-transcription factor I [Homo
sapiens]
Length = 398
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 318 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 376
Query: 104 TIWHM 108
I M
Sbjct: 377 LIRDM 381
>gi|325495565|gb|ADZ17388.1| chicken ovalbumin upstream promoter-transcription factor I [Homo
sapiens]
Length = 372
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 292 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 350
Query: 104 TIWHM 108
I M
Sbjct: 351 LIRDM 355
>gi|325495563|gb|ADZ17387.1| chicken ovalbumin upstream promoter-transcription factor I [Homo
sapiens]
Length = 397
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 317 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 375
Query: 104 TIWHM 108
I M
Sbjct: 376 LIRDM 380
>gi|335283225|ref|XP_003354261.1| PREDICTED: COUP transcription factor 1-like isoform 1 [Sus scrofa]
Length = 422
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 342 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 400
Query: 104 TIWHM 108
I M
Sbjct: 401 LIRDM 405
>gi|5032173|ref|NP_005645.1| COUP transcription factor 1 [Homo sapiens]
gi|332821062|ref|XP_517657.3| PREDICTED: COUP transcription factor 1 [Pan troglodytes]
gi|402872088|ref|XP_003899969.1| PREDICTED: COUP transcription factor 1 [Papio anubis]
gi|116959|sp|P10589.1|COT1_HUMAN RecName: Full=COUP transcription factor 1; Short=COUP-TF1; AltName:
Full=COUP transcription factor I; Short=COUP-TF I;
AltName: Full=Nuclear receptor subfamily 2 group F
member 1; AltName: Full=V-erbA-related protein 3;
Short=EAR-3
gi|31067|emb|CAA31283.1| unnamed protein product [Homo sapiens]
gi|13278759|gb|AAH04154.1| Nuclear receptor subfamily 2, group F, member 1 [Homo sapiens]
gi|52790443|gb|AAH17493.1| Nuclear receptor subfamily 2, group F, member 1 [Homo sapiens]
gi|119616415|gb|EAW96009.1| nuclear receptor subfamily 2, group F, member 1, isoform CRA_b
[Homo sapiens]
gi|208966886|dbj|BAG73457.1| nuclear receptor subfamily 2, group F, member 1 [synthetic
construct]
gi|387542998|gb|AFJ72126.1| COUP transcription factor 1 [Macaca mulatta]
Length = 423
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 343 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 401
Query: 104 TIWHM 108
I M
Sbjct: 402 LIRDM 406
>gi|28461227|ref|NP_786998.1| COUP transcription factor 1 [Bos taurus]
gi|10719970|sp|Q9TTR8.1|COT1_BOVIN RecName: Full=COUP transcription factor 1; Short=COUP-TF1; AltName:
Full=COUP transcription factor I; Short=COUP-TF I;
AltName: Full=Nuclear receptor subfamily 2 group F
member 1
gi|5870336|emb|CAB55623.1| transcription factor, COUP-TFI [Bos taurus]
Length = 424
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 344 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 402
Query: 104 TIWHM 108
I M
Sbjct: 403 LIRDM 407
>gi|449513880|ref|XP_002189105.2| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Taeniopygia guttata]
Length = 413
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 333 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 391
Query: 104 TIWHM 108
I M
Sbjct: 392 LIRDM 396
>gi|345798599|ref|XP_848884.2| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1 isoform
2 [Canis lupus familiaris]
Length = 423
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 343 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 401
Query: 104 TIWHM 108
I M
Sbjct: 402 LIRDM 406
>gi|325495567|gb|ADZ17389.1| chicken ovalbumin upstream promoter-transcription factor I [Homo
sapiens]
Length = 382
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 302 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 360
Query: 104 TIWHM 108
I M
Sbjct: 361 LIRDM 365
>gi|24111246|ref|NP_571258.1| COUP transcription factor 2 [Danio rerio]
gi|1311663|gb|AAA99309.1| Drosophila seven-up homolog/mammalian ARP-1 homolog [Danio rerio]
Length = 422
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 344 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 402
Query: 104 TIWHM 108
I M
Sbjct: 403 LIRDM 407
>gi|190339066|gb|AAI62484.1| Nr2f2 protein [Danio rerio]
Length = 428
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 350 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 408
Query: 104 TIWHM 108
I M
Sbjct: 409 LIRDM 413
>gi|380800545|gb|AFE72148.1| COUP transcription factor 1, partial [Macaca mulatta]
Length = 383
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 303 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 361
Query: 104 TIWHM 108
I M
Sbjct: 362 LIRDM 366
>gi|297294717|ref|XP_001089115.2| PREDICTED: COUP transcription factor 1 [Macaca mulatta]
Length = 560
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 480 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 538
Query: 104 TIWHM 108
I M
Sbjct: 539 LIRDM 543
>gi|20589472|ref|NP_571255.1| nuclear receptor subfamily 2 group F member 1-A [Danio rerio]
gi|6094377|sp|Q06725.1|N2F1A_DANRE RecName: Full=Nuclear receptor subfamily 2 group F member 1-A;
AltName: Full=COUP transcription factor 1-A;
Short=COUP-TFalpha-A; Short=zCOUP-TFI; AltName:
Full=Seven-up related 44; Short=Svp[44]; Short=zSvp[44];
AltName: Full=Steroid receptor homolog SVP 44
gi|296419|emb|CAA49780.1| svp 44 [Danio rerio]
gi|45219746|gb|AAH66671.1| Nuclear receptor subfamily 2, group F, member 1a [Danio rerio]
Length = 411
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 333 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 391
Query: 104 TIWHM 108
I M
Sbjct: 392 LIRDM 396
>gi|154147672|ref|NP_001093677.1| nuclear receptor subfamily 2, group F, member 1 [Xenopus (Silurana)
tropicalis]
gi|138519913|gb|AAI35590.1| nr2f1 protein [Xenopus (Silurana) tropicalis]
Length = 410
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 330 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 388
Query: 104 TIWHM 108
I M
Sbjct: 389 LIRDM 393
>gi|34194058|gb|AAH56574.1| Nuclear receptor subfamily 2, group F, member 1a [Danio rerio]
Length = 410
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 332 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 390
Query: 104 TIWHM 108
I M
Sbjct: 391 LIRDM 395
>gi|147900283|ref|NP_001083835.1| nuclear receptor subfamily 2, group F, member 1 [Xenopus laevis]
gi|5353742|gb|AAD42224.1|AF157558_1 COUP transcription factor 1 [Xenopus laevis]
gi|213623636|gb|AAI70009.1| COUP transcription factor 1 [Xenopus laevis]
gi|213626739|gb|AAI70011.1| COUP transcription factor 1 [Xenopus laevis]
Length = 411
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 331 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 389
Query: 104 TIWHM 108
I M
Sbjct: 390 LIRDM 394
>gi|148234557|ref|NP_001087950.1| Nr2f2 protein [Xenopus laevis]
gi|50416274|gb|AAH78057.1| Nr2f2 protein [Xenopus laevis]
Length = 404
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 324 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 382
Query: 104 TIWHM 108
I M
Sbjct: 383 LIRDM 387
>gi|410923623|ref|XP_003975281.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Takifugu rubripes]
Length = 411
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 333 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 391
Query: 104 TIWHM 108
I M
Sbjct: 392 LIRDM 396
>gi|348530340|ref|XP_003452669.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Oreochromis niloticus]
Length = 410
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 332 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 390
Query: 104 TIWHM 108
I M
Sbjct: 391 LIRDM 395
>gi|145228046|gb|ABP48744.1| COUP-TF/Svp nuclear hormone receptor [Callosobruchus maculatus]
Length = 419
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 37/53 (69%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
+IQ +Q L +Y + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G
Sbjct: 344 SIQEKSQCALEEYCRSQYPNQPTRFGKLLLRLPSLRTVSSAVIEQLFFVRLVG 396
>gi|426231150|ref|XP_004023618.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1 [Ovis
aries]
Length = 457
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 377 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 435
Query: 104 TIWHM 108
I M
Sbjct: 436 LIRDM 440
>gi|270002751|gb|EEZ99198.1| tailless [Tribolium castaneum]
Length = 406
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 27 SRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPR-LKSIPSLV 85
S ++ + T S + IQ Q+ LNK++ T YP QP RF KI L++ ++I
Sbjct: 314 SSSSNQEKTTTESAKISVIQDDAQMRLNKHVTTTYPKQPLRFGKILLLVSSTFRTISGRT 373
Query: 86 LEELFFRNIIGHNTTIKKTIWHMYKN 111
+E+LFF+ +I +T I I +MYKN
Sbjct: 374 IEDLFFKKVI-RDTPIVAIISNMYKN 398
>gi|432850560|ref|XP_004066811.1| PREDICTED: hepatocyte nuclear factor 4-gamma-like [Oryzias latipes]
Length = 385
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q +Q+ L ++I + YPSQP RF K+ L+LP L+ + S +E LFF IG NT ++K
Sbjct: 320 LQDQSQVMLGQHIRSHYPSQPARFGKLLLLLPSLRFVNSERIELLFFHRTIG-NTPMEKL 378
Query: 105 IWHMYKN 111
+ M+KN
Sbjct: 379 LCDMFKN 385
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/61 (42%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q +Q+ L ++I + YPSQP RF K+ L+LP L+ + S +E LFF IG NT ++K
Sbjct: 144 LQDQSQVMLGQHIRSHYPSQPARFGKLLLLLPSLRFVNSERIELLFFHRTIG-NTPMEKL 202
Query: 105 I 105
+
Sbjct: 203 L 203
>gi|410911980|ref|XP_003969468.1| PREDICTED: COUP transcription factor 2-like [Takifugu rubripes]
Length = 431
Score = 54.7 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
+Q +Q L +Y+ + YP+QP RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 353 GLQEKSQCALEEYVRSQYPNQPNRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 411
Query: 104 TIWHMYKNAG 113
I M + G
Sbjct: 412 LIRDMLLSGG 421
>gi|347968053|ref|XP_312394.4| AGAP002544-PA [Anopheles gambiae str. PEST]
gi|333468184|gb|EAA07520.4| AGAP002544-PA [Anopheles gambiae str. PEST]
Length = 515
Score = 54.7 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 437 SLQEKSQCALEEYCRSQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIET 495
Query: 104 TIWHM 108
I M
Sbjct: 496 LIRDM 500
>gi|432111648|gb|ELK34747.1| Photoreceptor-specific nuclear receptor [Myotis davidii]
Length = 404
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
A+Q +Q+ L+++ +PSQP RF K+ L+LP L+ I S +E LFFR IG NT ++K
Sbjct: 338 ALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITSERIELLFFRKTIG-NTPMEK 396
Query: 104 TIWHMYKN 111
+ M+KN
Sbjct: 397 LLCDMFKN 404
>gi|148705178|gb|EDL37125.1| nuclear receptor subfamily 2, group F, member 1 [Mus musculus]
Length = 416
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 336 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 394
Query: 104 TIWHM 108
I M
Sbjct: 395 LIRDM 399
>gi|432850556|ref|XP_004066809.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Oryzias
latipes]
Length = 431
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q +Q+ L ++I + YPSQP RF K+ L+LP L+ + S +E LFF IG NT ++K
Sbjct: 366 LQDQSQVMLGQHIRSHYPSQPARFGKLLLLLPSLRFVNSERIELLFFHRTIG-NTPMEKL 424
Query: 105 IWHMYKN 111
+ M+KN
Sbjct: 425 LCDMFKN 431
>gi|242006613|ref|XP_002424143.1| coup transcription factor, putative [Pediculus humanus corporis]
gi|212507468|gb|EEB11405.1| coup transcription factor, putative [Pediculus humanus corporis]
Length = 92
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y T YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 14 SLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIET 72
Query: 104 TIWHM 108
I M
Sbjct: 73 LIRDM 77
>gi|269315847|ref|NP_001161372.1| photoreceptor-specific nuclear receptor [Bos taurus]
gi|296483590|tpg|DAA25705.1| TPA: photoreceptor-specific nuclear receptor [Bos taurus]
Length = 411
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
A+Q +Q+ L+++ +PSQP RF K+ L+LP L+ I S +E LFFR IG NT ++K
Sbjct: 345 ALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFISSERVELLFFRKTIG-NTPMEK 403
Query: 104 TIWHMYKN 111
+ M+KN
Sbjct: 404 LLCDMFKN 411
>gi|344284423|ref|XP_003413967.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Loxodonta
africana]
Length = 608
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
A+Q +Q+ L+++ +PSQP RF K+ L+LP L+ I S +E LFFR IG NT ++K
Sbjct: 542 ALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITSERIELLFFRKTIG-NTPMEK 600
Query: 104 TIWHMYKN 111
+ M+KN
Sbjct: 601 LLCDMFKN 608
>gi|395822830|ref|XP_003784710.1| PREDICTED: photoreceptor-specific nuclear receptor [Otolemur
garnettii]
Length = 693
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
A+Q +Q+ L+++ +PSQP RF K+ L+LP L+ I S +E LFFR IG NT ++K
Sbjct: 627 ALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITSERIELLFFRKTIG-NTPMEK 685
Query: 104 TIWHMYKN 111
+ M+KN
Sbjct: 686 LLCDMFKN 693
>gi|410912674|ref|XP_003969814.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Takifugu
rubripes]
Length = 431
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q +Q+ L ++I + YPSQP RF K+ L+LP L+ + S +E LFF IG NT ++K
Sbjct: 366 LQDQSQVMLGQHIRSHYPSQPARFGKLLLLLPSLRFVNSERIELLFFHRTIG-NTPMEKL 424
Query: 105 IWHMYKN 111
+ M+KN
Sbjct: 425 LCDMFKN 431
>gi|440897500|gb|ELR49170.1| Photoreceptor-specific nuclear receptor, partial [Bos grunniens
mutus]
Length = 427
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
A+Q +Q+ L+++ +PSQP RF K+ L+LP L+ I S +E LFFR IG NT ++K
Sbjct: 361 ALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFISSERVELLFFRKTIG-NTPMEK 419
Query: 104 TIWHMYKN 111
+ M+KN
Sbjct: 420 LLCDMFKN 427
>gi|348533763|ref|XP_003454374.1| PREDICTED: photoreceptor-specific nuclear receptor-like
[Oreochromis niloticus]
Length = 426
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q +Q+ L ++I + YPSQP RF K+ L+LP L+ + S +E LFF IG NT ++K
Sbjct: 361 LQDQSQVMLGQHIRSHYPSQPARFGKLLLLLPSLRFVNSERIELLFFHRTIG-NTPMEKL 419
Query: 105 IWHMYKN 111
+ M+KN
Sbjct: 420 LCDMFKN 426
>gi|281346029|gb|EFB21613.1| hypothetical protein PANDA_017952 [Ailuropoda melanoleuca]
Length = 358
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 278 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 336
Query: 104 TIWHM 108
I M
Sbjct: 337 LIRDM 341
>gi|83835516|gb|ABC47791.1| nuclear receptor subfamily 2 group F member 2, partial [Phodopus
sungorus]
Length = 100
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 22 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 80
Query: 104 TIWHM 108
I M
Sbjct: 81 LIRDM 85
>gi|431893708|gb|ELK03529.1| Photoreceptor-specific nuclear receptor [Pteropus alecto]
Length = 417
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
A+Q +Q+ L+++ +PSQP RF K+ L+LP L+ I S +E LFFR IG NT ++K
Sbjct: 351 ALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITSERVELLFFRKTIG-NTPMEK 409
Query: 104 TIWHMYKN 111
+ M+KN
Sbjct: 410 LLCDMFKN 417
>gi|410960926|ref|XP_003987038.1| PREDICTED: photoreceptor-specific nuclear receptor [Felis catus]
Length = 411
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
A+Q +Q+ L+++ +PSQP RF K+ L+LP L+ I S +E LFFR IG NT ++K
Sbjct: 345 ALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITSERVELLFFRKTIG-NTPMEK 403
Query: 104 TIWHMYKN 111
+ M+KN
Sbjct: 404 LLCDMFKN 411
>gi|350416858|ref|XP_003491138.1| PREDICTED: steroid receptor seven-up, isoforms B/C-like, partial
[Bombus impatiens]
Length = 324
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y T YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 246 SLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIET 304
Query: 104 TIWHM 108
I M
Sbjct: 305 LIRDM 309
>gi|426233871|ref|XP_004010932.1| PREDICTED: photoreceptor-specific nuclear receptor [Ovis aries]
Length = 516
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
A+Q +Q+ L+++ +PSQP RF K+ L+LP L+ I S +E LFFR IG NT ++K
Sbjct: 450 ALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITSERVELLFFRKTIG-NTPMEK 508
Query: 104 TIWHMYKN 111
+ M+KN
Sbjct: 509 LLCDMFKN 516
>gi|55925486|ref|NP_956886.1| nuclear receptor subfamily 2 group F member 1-B [Danio rerio]
gi|82202654|sp|Q6PH18.1|N2F1B_DANRE RecName: Full=Nuclear receptor subfamily 2 group F member 1-B;
AltName: Full=COUP transcription factor 1-B;
Short=COUP-TFalpha-B
gi|34785135|gb|AAH56748.1| Nuclear receptor subfamily 2, group F, member 1b [Danio rerio]
Length = 389
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
+Q +Q L +Y+ + YP+QPTRF K+ L LP L+ + S V+E+LFF ++G T I+
Sbjct: 311 GLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPALRMVSSSVIEQLFFVRLVG-KTPIET 369
Query: 104 TIWHM 108
I M
Sbjct: 370 LIRDM 374
>gi|41351197|gb|AAH65651.1| Nr2f1b protein [Danio rerio]
Length = 388
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
+Q +Q L +Y+ + YP+QPTRF K+ L LP L+ + S V+E+LFF ++G T I+
Sbjct: 310 GLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPALRMVSSSVIEQLFFVRLVG-KTPIET 368
Query: 104 TIWHM 108
I M
Sbjct: 369 LIRDM 373
>gi|1036801|gb|AAA93013.1| svp, partial [Schistocerca americana]
Length = 121
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
+Q +Q L +Y T YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 43 GLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIET 101
Query: 104 TIWHM 108
I M
Sbjct: 102 LIRDM 106
>gi|32454395|gb|AAP82999.1| ovalbumin upstream promoter transcription factor II [Bos taurus]
Length = 339
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 261 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 319
Query: 104 TIWHM 108
I M
Sbjct: 320 LIRDM 324
>gi|193598915|ref|XP_001944021.1| PREDICTED: steroid receptor seven-up, isoforms B/C-like
[Acyrthosiphon pisum]
Length = 446
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y T YP+QP RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 368 SLQEKSQCALEEYCRTQYPNQPIRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIET 426
Query: 104 TIWHM 108
I M
Sbjct: 427 LIRDM 431
>gi|322800489|gb|EFZ21493.1| hypothetical protein SINV_13619 [Solenopsis invicta]
Length = 90
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y T YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 12 SLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIET 70
Query: 104 TIWHM 108
I M
Sbjct: 71 LIRDM 75
>gi|147900594|ref|NP_001090633.1| nuclear receptor subfamily 2, group E, member 3 [Xenopus (Silurana)
tropicalis]
gi|115392210|gb|ABI96907.1| nuclear hormone receptor Nr2e3 [Xenopus (Silurana) tropicalis]
Length = 404
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q +Q+ L ++ YP+QP RF K+ L+ P L+ I S +E LFF IG NT ++K
Sbjct: 339 LQDQSQMMLAQHTRNQYPAQPVRFGKLLLLSPSLRFISSERIELLFFHRTIG-NTPMEKL 397
Query: 105 IWHMYKN 111
+ M+KN
Sbjct: 398 LCDMFKN 404
>gi|156359518|ref|XP_001624815.1| predicted protein [Nematostella vectensis]
gi|156211616|gb|EDO32715.1| predicted protein [Nematostella vectensis]
Length = 327
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q Q L +Y + YP Q RF K+ L+LP LK++ ++E+LFFR + N I++
Sbjct: 261 LQDQAQSMLGEYCRSQYPDQQVRFGKLLLMLPSLKTVSPKMIEDLFFRGTL-DNVPIERM 319
Query: 105 IWHMYKNA 112
+ M+K++
Sbjct: 320 LCDMFKSS 327
>gi|397504531|ref|XP_003822842.1| PREDICTED: COUP transcription factor 1 [Pan paniscus]
Length = 523
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 443 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 501
Query: 104 TIWHM 108
I M
Sbjct: 502 LIRDM 506
>gi|84617148|emb|CAH59197.1| seven-up protein [Cupiennius salei]
Length = 353
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y T YP++PTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 275 SLQEKSQCALEEYCRTQYPNRPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIET 333
Query: 104 TIWHM 108
I M
Sbjct: 334 LIRDM 338
>gi|351697339|gb|EHB00258.1| COUP transcription factor 2 [Heterocephalus glaber]
Length = 271
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 193 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 251
Query: 104 TIWHM 108
I M
Sbjct: 252 LIRDM 256
>gi|307190827|gb|EFN74679.1| Steroid receptor seven-up, isoforms B/C [Camponotus floridanus]
Length = 96
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y T YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 17 SLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIET 75
Query: 104 TIWHM 108
I M
Sbjct: 76 LIRDM 80
>gi|224797875|gb|ACN62901.1| nuclear receptor subfamily 2 group F member 2 [Ovis aries]
Length = 71
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 38/53 (71%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G
Sbjct: 15 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG 67
>gi|209156457|pdb|3CJW|A Chain A, Crystal Structure Of The Human Coup-Tfii Ligand Binding
Domain
Length = 244
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 166 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 224
Query: 104 TIWHM 108
I M
Sbjct: 225 LIRDM 229
>gi|24646230|ref|NP_731682.1| seven up, isoform C [Drosophila melanogaster]
gi|18447096|gb|AAL68139.1| AT29920p [Drosophila melanogaster]
gi|23171092|gb|AAF54774.2| seven up, isoform C [Drosophila melanogaster]
gi|220942234|gb|ACL83660.1| svp-PC [synthetic construct]
gi|220952448|gb|ACL88767.1| svp-PC [synthetic construct]
Length = 281
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y T YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 203 SLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIET 261
Query: 104 TIWHM 108
I M
Sbjct: 262 LIRDM 266
>gi|170056905|ref|XP_001864243.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167876530|gb|EDS39913.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 284
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 95 SLQEKSQCALEEYCRSQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIET 153
Query: 104 TIWHM 108
I M
Sbjct: 154 LIRDM 158
>gi|355707891|gb|AES03097.1| nuclear receptor subfamily 2, group F, member 1 [Mustela putorius
furo]
Length = 275
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 198 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 256
Query: 104 TIWHM 108
I M
Sbjct: 257 LIRDM 261
>gi|242247451|ref|NP_001156015.1| COUP transcription factor 2 [Ovis aries]
gi|134024805|gb|AAI34736.1| NR2F2 protein [Bos taurus]
gi|238799806|gb|ACR55775.1| nuclear receptor subfamily 2 group F member 2 [Ovis aries]
Length = 281
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 203 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 261
Query: 104 TIWHM 108
I M
Sbjct: 262 LIRDM 266
>gi|443688970|gb|ELT91492.1| hypothetical protein CAPTEDRAFT_53417, partial [Capitella teleta]
Length = 390
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L YI YPS RF K+ L+LP LK+I LE LFF IG N +++
Sbjct: 323 SLQDQAQLMLRDYIFQQYPSNKFRFGKLILLLPALKTISPRTLERLFFGKTIG-NVPVER 381
Query: 104 TIWHMYKNA 112
+ M+K++
Sbjct: 382 LLCDMFKSS 390
>gi|73611910|ref|NP_899084.2| COUP transcription factor 2 isoform 2 [Mus musculus]
gi|223555949|ref|NP_001138627.1| COUP transcription factor 2 isoform b [Homo sapiens]
gi|298228995|ref|NP_001177182.1| COUP transcription factor 2 isoform 2 [Sus scrofa]
gi|73951111|ref|XP_536178.2| PREDICTED: COUP transcription factor 2 isoform 1 [Canis lupus
familiaris]
gi|291409135|ref|XP_002720865.1| PREDICTED: nuclear receptor subfamily 2, group F, member 2-like
[Oryctolagus cuniculus]
gi|332238778|ref|XP_003268579.1| PREDICTED: COUP transcription factor 2 isoform 1 [Nomascus
leucogenys]
gi|338717599|ref|XP_003363656.1| PREDICTED: COUP transcription factor 2-like isoform 1 [Equus
caballus]
gi|344284393|ref|XP_003413952.1| PREDICTED: COUP transcription factor 2 isoform 2 [Loxodonta
africana]
gi|354465707|ref|XP_003495319.1| PREDICTED: COUP transcription factor 2-like [Cricetulus griseus]
gi|395502497|ref|XP_003755616.1| PREDICTED: COUP transcription factor 2 isoform 2 [Sarcophilus
harrisii]
gi|403258146|ref|XP_003921638.1| PREDICTED: COUP transcription factor 2 isoform 1 [Saimiri
boliviensis boliviensis]
gi|410960648|ref|XP_003986901.1| PREDICTED: COUP transcription factor 2 isoform 1 [Felis catus]
gi|76780223|gb|AAI06084.1| NR2F2 protein [Homo sapiens]
gi|119622601|gb|EAX02196.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_b
[Homo sapiens]
gi|149057165|gb|EDM08488.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_b
[Rattus norvegicus]
gi|194295609|gb|ACF40832.1| orphan nuclear receptor COUP-TFII [Sus scrofa]
gi|194377044|dbj|BAG63083.1| unnamed protein product [Homo sapiens]
gi|283482326|emb|CAR63888.1| nuclear receptor subfamily 2, group F, member 2 [Homo sapiens]
gi|325495509|gb|ADZ17360.1| chicken ovalbumin upstream promoter-transcription factor II variant
2 [Homo sapiens]
gi|384949090|gb|AFI38150.1| COUP transcription factor 2 isoform b [Macaca mulatta]
gi|387542112|gb|AFJ71683.1| COUP transcription factor 2 isoform b [Macaca mulatta]
gi|410216136|gb|JAA05287.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410258702|gb|JAA17318.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410307124|gb|JAA32162.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
Length = 281
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 203 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 261
Query: 104 TIWHM 108
I M
Sbjct: 262 LIRDM 266
>gi|259013249|ref|NP_001158369.1| transcription factor COUP1 [Saccoglossus kowalevskii]
gi|196123801|gb|ACG70189.1| COUP protein [Saccoglossus kowalevskii]
Length = 435
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q +Q L +Y+ + YP+QP RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 358 LQEKSQCALEEYVRSQYPNQPNRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIETL 416
Query: 105 IWHM 108
I M
Sbjct: 417 IRDM 420
>gi|86515358|ref|NP_001034502.1| tailless [Tribolium castaneum]
gi|8096685|gb|AAF71999.1|AF219117_1 tailless ortholog [Tribolium castaneum]
Length = 406
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 37 TGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPR-LKSIPSLVLEELFFRNII 95
T S + IQ Q+ LNK++ T YP QP RF KI L++ ++I +E+LFF+ +I
Sbjct: 324 TESAKISVIQDDAQMRLNKHVTTTYPKQPLRFGKILLLVSSTFRTISGRTIEDLFFKKVI 383
Query: 96 GHNTTIKKTIWHMYKN 111
+T I I +MYKN
Sbjct: 384 -RDTPIVAIISNMYKN 398
>gi|426248037|ref|XP_004017772.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 2 [Ovis aries]
Length = 281
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 203 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 261
Query: 104 TIWHM 108
I M
Sbjct: 262 LIRDM 266
>gi|301785285|ref|XP_002928058.1| PREDICTED: COUP transcription factor 1-like [Ailuropoda
melanoleuca]
Length = 414
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 334 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 392
Query: 104 TIWHM 108
I M
Sbjct: 393 LIRDM 397
>gi|449281976|gb|EMC88912.1| COUP transcription factor 2 [Columba livia]
Length = 281
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 203 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 261
Query: 104 TIWHM 108
I M
Sbjct: 262 LIRDM 266
>gi|345317530|ref|XP_001520123.2| PREDICTED: COUP transcription factor 1-like [Ornithorhynchus
anatinus]
Length = 124
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 4/92 (4%)
Query: 20 EIRNAYTSRRGSRVRFKTGSKFTA---AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILP 76
E RN + R + G A ++Q +Q L +Y+ + YP+QP+RF K+ L LP
Sbjct: 17 ETRNVAQAYRPTCFSDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLP 76
Query: 77 RLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 108
L+++ S V+E+LFF ++G T I+ I M
Sbjct: 77 SLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 107
>gi|397495508|ref|XP_003818594.1| PREDICTED: photoreceptor-specific nuclear receptor isoform 1 [Pan
paniscus]
Length = 402
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
A+Q +Q+ L+++ +PSQP RF K+ L+LP L+ I + +E LFFR IG NT ++K
Sbjct: 336 ALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIG-NTPMEK 394
Query: 104 TIWHMYKN 111
+ M+KN
Sbjct: 395 LLCDMFKN 402
>gi|284424952|dbj|BAI67122.1| nuclear receptor [Taeniopygia guttata]
Length = 181
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 38/53 (71%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G
Sbjct: 128 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG 180
>gi|114657918|ref|XP_001175025.1| PREDICTED: photoreceptor-specific nuclear receptor isoform 3 [Pan
troglodytes]
Length = 402
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
A+Q +Q+ L+++ +PSQP RF K+ L+LP L+ I + +E LFFR IG NT ++K
Sbjct: 336 ALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIG-NTPMEK 394
Query: 104 TIWHMYKN 111
+ M+KN
Sbjct: 395 LLCDMFKN 402
>gi|426379592|ref|XP_004056476.1| PREDICTED: photoreceptor-specific nuclear receptor [Gorilla gorilla
gorilla]
Length = 402
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
A+Q +Q+ L+++ +PSQP RF K+ L+LP L+ I + +E LFFR IG NT ++K
Sbjct: 336 ALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIG-NTPMEK 394
Query: 104 TIWHMYKN 111
+ M+KN
Sbjct: 395 LLCDMFKN 402
>gi|332021402|gb|EGI61770.1| Steroid receptor seven-up, isoforms B/C [Acromyrmex echinatior]
Length = 212
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y T YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 134 SLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIET 192
Query: 104 TIWHM 108
I M
Sbjct: 193 LIRDM 197
>gi|109081780|ref|XP_001089693.1| PREDICTED: photoreceptor-specific nuclear receptor [Macaca mulatta]
Length = 448
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
A+Q +Q+ L+++ +PSQP RF K+ L+LP L+ I + +E LFFR IG NT ++K
Sbjct: 382 ALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIG-NTPMEK 440
Query: 104 TIWHMYKN 111
+ M+KN
Sbjct: 441 LLCDMFKN 448
>gi|7657395|ref|NP_055064.1| photoreceptor-specific nuclear receptor isoform b [Homo sapiens]
gi|8928275|sp|Q9Y5X4.1|NR2E3_HUMAN RecName: Full=Photoreceptor-specific nuclear receptor; AltName:
Full=Nuclear receptor subfamily 2 group E member 3;
AltName: Full=Retina-specific nuclear receptor
gi|4726075|gb|AAD28301.1|AF121129_1 photoreceptor-specific nuclear receptor [Homo sapiens]
gi|7329721|emb|CAB82769.1| photoreceptor-specific nuclear receptor [Homo sapiens]
gi|119598282|gb|EAW77876.1| nuclear receptor subfamily 2, group E, member 3, isoform CRA_a
[Homo sapiens]
gi|216409728|dbj|BAH02301.1| photoreceptor-specific nuclear receptor [Homo sapiens]
Length = 410
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
A+Q +Q+ L+++ +PSQP RF K+ L+LP L+ I + +E LFFR IG NT ++K
Sbjct: 344 ALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIG-NTPMEK 402
Query: 104 TIWHMYKN 111
+ M+KN
Sbjct: 403 LLCDMFKN 410
>gi|114657922|ref|XP_001175020.1| PREDICTED: photoreceptor-specific nuclear receptor isoform 1 [Pan
troglodytes]
Length = 322
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
A+Q +Q+ L+++ +PSQP RF K+ L+LP L+ I + +E LFFR IG NT ++K
Sbjct: 256 ALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIG-NTPMEK 314
Query: 104 TIWHMYKN 111
+ M+KN
Sbjct: 315 LLCDMFKN 322
>gi|354473494|ref|XP_003498970.1| PREDICTED: photoreceptor-specific nuclear receptor [Cricetulus
griseus]
Length = 403
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
A+Q +Q+ L+++ +PSQP RF K+ L+LP L+ I + +E LFFR IG NT ++K
Sbjct: 337 ALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIG-NTPMEK 395
Query: 104 TIWHMYKN 111
+ M+KN
Sbjct: 396 LLCDMFKN 403
>gi|344248427|gb|EGW04531.1| Photoreceptor-specific nuclear receptor [Cricetulus griseus]
Length = 395
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
A+Q +Q+ L+++ +PSQP RF K+ L+LP L+ I + +E LFFR IG NT ++K
Sbjct: 329 ALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIG-NTPMEK 387
Query: 104 TIWHMYKN 111
+ M+KN
Sbjct: 388 LLCDMFKN 395
>gi|126272955|ref|XP_001371421.1| PREDICTED: photoreceptor-specific nuclear receptor-like
[Monodelphis domestica]
Length = 405
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/67 (44%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q +Q+ L ++ YPSQP RF K+ L+LP L+ I S +E LFFR IG NT ++K
Sbjct: 340 LQDQSQVMLGQHNKMHYPSQPVRFGKLLLLLPALRFISSDRIELLFFRRTIG-NTPMEKL 398
Query: 105 IWHMYKN 111
+ M+KN
Sbjct: 399 LCDMFKN 405
>gi|355692849|gb|EHH27452.1| Retina-specific nuclear receptor, partial [Macaca mulatta]
Length = 411
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
A+Q +Q+ L+++ +PSQP RF K+ L+LP L+ I + +E LFFR IG NT ++K
Sbjct: 345 ALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIG-NTPMEK 403
Query: 104 TIWHMYKN 111
+ M+KN
Sbjct: 404 LLCDMFKN 411
>gi|293349263|ref|XP_002727107.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Rattus
norvegicus]
Length = 397
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 17 SNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILP 76
S E++ A+ R A+Q +Q+ L+++ +PSQP RF K+ L+LP
Sbjct: 304 SERELKGAHCCCFSPETRGLKDPDHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLP 363
Query: 77 RLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKN 111
L+ I + +E LFFR IG NT ++K + M+KN
Sbjct: 364 SLRFITAERIELLFFRKTIG-NTPMEKLLCDMFKN 397
>gi|223555951|ref|NP_001138628.1| COUP transcription factor 2 isoform c [Homo sapiens]
gi|223555953|ref|NP_001138629.1| COUP transcription factor 2 isoform c [Homo sapiens]
gi|73951115|ref|XP_858826.1| PREDICTED: COUP transcription factor 2 isoform 4 [Canis lupus
familiaris]
gi|114659052|ref|XP_001135366.1| PREDICTED: COUP transcription factor 2 isoform 2 [Pan troglodytes]
gi|332238782|ref|XP_003268581.1| PREDICTED: COUP transcription factor 2 isoform 3 [Nomascus
leucogenys]
gi|338717601|ref|XP_003363657.1| PREDICTED: COUP transcription factor 2-like isoform 2 [Equus
caballus]
gi|403258148|ref|XP_003921639.1| PREDICTED: COUP transcription factor 2 isoform 2 [Saimiri
boliviensis boliviensis]
gi|403258150|ref|XP_003921640.1| PREDICTED: COUP transcription factor 2 isoform 3 [Saimiri
boliviensis boliviensis]
gi|410960650|ref|XP_003986902.1| PREDICTED: COUP transcription factor 2 isoform 2 [Felis catus]
gi|410960652|ref|XP_003986903.1| PREDICTED: COUP transcription factor 2 isoform 3 [Felis catus]
gi|441616841|ref|XP_004088401.1| PREDICTED: COUP transcription factor 2 [Nomascus leucogenys]
gi|119622602|gb|EAX02197.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_c
[Homo sapiens]
gi|148675208|gb|EDL07155.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_a [Mus
musculus]
gi|148675209|gb|EDL07156.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_a [Mus
musculus]
gi|194385096|dbj|BAG60954.1| unnamed protein product [Homo sapiens]
gi|221045560|dbj|BAH14457.1| unnamed protein product [Homo sapiens]
gi|325495511|gb|ADZ17361.1| chicken ovalbumin upstream promoter-transcription factor II variant
3 [Homo sapiens]
gi|344238582|gb|EGV94685.1| COUP transcription factor 2 [Cricetulus griseus]
Length = 261
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 183 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 241
Query: 104 TIWHM 108
I M
Sbjct: 242 LIRDM 246
>gi|76364250|gb|ABA41639.1| COUP transcription factor-like protein [Strongylocentrotus
purpuratus]
Length = 336
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
A+Q +Q L +Y+ + YP+QP RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 258 ALQEKSQCALEEYVRSQYPNQPNRFGKLLLRLPSLRTVSSHVIEQLFFVRLVG-KTPIET 316
Query: 104 TIWHM 108
I M
Sbjct: 317 LIRDM 321
>gi|297697018|ref|XP_002825669.1| PREDICTED: photoreceptor-specific nuclear receptor [Pongo abelii]
Length = 614
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
A+Q +Q+ L+++ +PSQP RF K+ L+LP L+ I + +E LFFR IG NT ++K
Sbjct: 548 ALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIG-NTPMEK 606
Query: 104 TIWHMYKN 111
+ M+KN
Sbjct: 607 LLCDMFKN 614
>gi|426248035|ref|XP_004017771.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 1 [Ovis aries]
gi|426248039|ref|XP_004017773.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 3 [Ovis aries]
gi|426248041|ref|XP_004017774.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 4 [Ovis aries]
gi|426248043|ref|XP_004017775.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 5 [Ovis aries]
Length = 261
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 183 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 241
Query: 104 TIWHM 108
I M
Sbjct: 242 LIRDM 246
>gi|403276151|ref|XP_003929774.1| PREDICTED: photoreceptor-specific nuclear receptor [Saimiri
boliviensis boliviensis]
Length = 552
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
A+Q +Q+ L+++ +PSQP RF K+ L+LP L+ I + +E LFFR IG NT ++K
Sbjct: 486 ALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIG-NTPMEK 544
Query: 104 TIWHMYKN 111
+ M+KN
Sbjct: 545 LLCDMFKN 552
>gi|397495510|ref|XP_003818595.1| PREDICTED: photoreceptor-specific nuclear receptor isoform 2 [Pan
paniscus]
Length = 322
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
A+Q +Q+ L+++ +PSQP RF K+ L+LP L+ I + +E LFFR IG NT ++K
Sbjct: 256 ALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIG-NTPMEK 314
Query: 104 TIWHMYKN 111
+ M+KN
Sbjct: 315 LLCDMFKN 322
>gi|402874751|ref|XP_003901191.1| PREDICTED: photoreceptor-specific nuclear receptor [Papio anubis]
Length = 445
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
A+Q +Q+ L+++ +PSQP RF K+ L+LP L+ I + +E LFFR IG NT ++K
Sbjct: 379 ALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIG-NTPMEK 437
Query: 104 TIWHMYKN 111
+ M+KN
Sbjct: 438 LLCDMFKN 445
>gi|391328748|ref|XP_003738846.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
E member 1-like [Metaseiulus occidentalis]
Length = 524
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q Q L Y+ YP QPTRF ++ L+LP L+SI ++ +E+LFF+ IG N ++K
Sbjct: 455 LQDQAQCVLGDYVRERYPRQPTRFGRLLLLLPILRSISNVFIEKLFFKGTIG-NIRVEKI 513
Query: 105 IWHMY 109
+ MY
Sbjct: 514 LGEMY 518
>gi|27371232|gb|AAH41421.1| NR2E3 protein [Homo sapiens]
Length = 322
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
A+Q +Q+ L+++ +PSQP RF K+ L+LP L+ I + +E LFFR IG NT ++K
Sbjct: 256 ALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIG-NTPMEK 314
Query: 104 TIWHMYKN 111
+ M+KN
Sbjct: 315 LLCDMFKN 322
>gi|12484038|gb|AAG53940.1| nuclear hormone receptor [Aedes aegypti]
Length = 493
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y + YP+QPTRF K+ L LP L+++ S V+E+ FF ++G T I+
Sbjct: 415 SLQEKSQCALEEYCRSQYPNQPTRFGKLLLRLPSLRTVSSQVIEQFFFVRLVG-KTPIET 473
Query: 104 TIWHM 108
I M
Sbjct: 474 LIRDM 478
>gi|74145119|dbj|BAE27426.1| unnamed protein product [Mus musculus]
Length = 390
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y+ YPSQP RF ++ L LP ++++P+ ++ +LFF ++G T I+
Sbjct: 313 SLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPAMRAVPASLISQLFFMRLVG-KTPIET 371
Query: 104 TIWHM 108
I M
Sbjct: 372 LIRDM 376
>gi|296213607|ref|XP_002753344.1| PREDICTED: photoreceptor-specific nuclear receptor [Callithrix
jacchus]
Length = 368
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
A+Q +Q+ L+++ +PSQP RF K+ L+LP L+ I + +E LFFR IG NT ++K
Sbjct: 302 ALQDQSQVMLSQHSKAHHPSQPMRFGKLLLLLPSLRFITAERIELLFFRKTIG-NTPMEK 360
Query: 104 TIWHMYKN 111
+ M+KN
Sbjct: 361 LLCDMFKN 368
>gi|355778151|gb|EHH63187.1| hypothetical protein EGM_16101, partial [Macaca fascicularis]
Length = 302
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
A+Q +Q+ L+++ +PSQP RF K+ L+LP L+ I + +E LFFR IG NT ++K
Sbjct: 236 ALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIG-NTPMEK 294
Query: 104 TIWHMYKN 111
+ M+KN
Sbjct: 295 LLCDMFKN 302
>gi|410949022|ref|XP_003981224.1| PREDICTED: COUP transcription factor 1, partial [Felis catus]
Length = 335
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 255 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 313
Query: 104 TIWHM 108
I M
Sbjct: 314 LIRDM 318
>gi|449267650|gb|EMC78568.1| Photoreceptor-specific nuclear receptor [Columba livia]
Length = 406
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q +Q+ L ++ + YP QP RF K+ L+LP L+ I S +E LFFR IG NT ++K
Sbjct: 341 LQDQSQVMLGQHNRSHYPGQPVRFGKLLLLLPALRFISSERVELLFFRRTIG-NTPMEKL 399
Query: 105 IWHMYKN 111
+ M+KN
Sbjct: 400 LCDMFKN 406
>gi|354499555|ref|XP_003511874.1| PREDICTED: COUP transcription factor 1-like [Cricetulus griseus]
Length = 295
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 215 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 273
Query: 104 TIWHM 108
I M
Sbjct: 274 LIRDM 278
>gi|224062203|ref|XP_002192483.1| PREDICTED: photoreceptor-specific nuclear receptor [Taeniopygia
guttata]
Length = 404
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q +Q+ L ++ + YP QP RF K+ L+LP L+ I S +E LFFR IG NT ++K
Sbjct: 339 LQDQSQVMLGQHNRSHYPGQPVRFGKLLLLLPALRFISSERVELLFFRRTIG-NTPMEKL 397
Query: 105 IWHMYKN 111
+ M+KN
Sbjct: 398 LCDMFKN 404
>gi|121484110|gb|ABM54395.1| NR2E3 [Pan paniscus]
Length = 76
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
A+Q +Q+ L+++ +PSQP RF K+ L+LP L+ I + +E LFFR IG NT ++K
Sbjct: 10 ALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIG-NTPMEK 68
Query: 104 TIWHMYKN 111
+ M+KN
Sbjct: 69 LLCDMFKN 76
>gi|355691480|gb|EHH26665.1| COUP transcription factor 1, partial [Macaca mulatta]
Length = 270
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 190 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 248
Query: 104 TIWHM 108
I M
Sbjct: 249 LIRDM 253
>gi|157131845|ref|XP_001655964.1| coup transcription factor [Aedes aegypti]
Length = 102
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 24 SLQEKSQCALEEYCRSQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIET 82
Query: 104 TIWHM 108
I M
Sbjct: 83 LIRDM 87
>gi|355750064|gb|EHH54402.1| COUP transcription factor 1, partial [Macaca fascicularis]
Length = 269
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 189 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGK-TPIET 247
Query: 104 TIWHM 108
I M
Sbjct: 248 LIRDM 252
>gi|335283227|ref|XP_003354262.1| PREDICTED: COUP transcription factor 1-like isoform 2 [Sus scrofa]
gi|426349454|ref|XP_004042315.1| PREDICTED: COUP transcription factor 1 [Gorilla gorilla gorilla]
gi|151554252|gb|AAI49439.1| NR2F1 protein [Bos taurus]
Length = 273
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 193 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 251
Query: 104 TIWHM 108
I M
Sbjct: 252 LIRDM 256
>gi|403256261|ref|XP_003920807.1| PREDICTED: COUP transcription factor 1 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 279
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 199 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 257
Query: 104 TIWHM 108
I M
Sbjct: 258 LIRDM 262
>gi|444519103|gb|ELV12583.1| COUP transcription factor 1 [Tupaia chinensis]
Length = 216
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 136 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 194
Query: 104 TIWHM 108
I M
Sbjct: 195 LIRDM 199
>gi|47211605|emb|CAF91926.1| unnamed protein product [Tetraodon nigroviridis]
Length = 267
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 189 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 247
Query: 104 TIWHM 108
I M
Sbjct: 248 LIRDM 252
>gi|395501668|ref|XP_003755213.1| PREDICTED: LOW QUALITY PROTEIN: photoreceptor-specific nuclear
receptor [Sarcophilus harrisii]
Length = 327
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q +Q+ L ++ YPSQP RF K+ L+LP L+ I S +E LFFR IG NT ++K
Sbjct: 262 LQDQSQVMLGQHNKMHYPSQPVRFGKLLLLLPSLRFISSDRIELLFFRRTIG-NTPMEKL 320
Query: 105 IWHMYKN 111
+ M+KN
Sbjct: 321 LCDMFKN 327
>gi|351709883|gb|EHB12802.1| COUP transcription factor 1 [Heterocephalus glaber]
Length = 251
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 171 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 229
Query: 104 TIWHM 108
I M
Sbjct: 230 LIRDM 234
>gi|403182505|gb|EAT46025.2| AAEL002765-PA, partial [Aedes aegypti]
Length = 274
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 196 SLQEKSQCALEEYCRSQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIET 254
Query: 104 TIWHM 108
I M
Sbjct: 255 LIRDM 259
>gi|431907899|gb|ELK11506.1| COUP transcription factor 1 [Pteropus alecto]
Length = 263
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 183 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 241
Query: 104 TIWHM 108
I M
Sbjct: 242 LIRDM 246
>gi|345794757|ref|XP_544754.3| PREDICTED: photoreceptor-specific nuclear receptor [Canis lupus
familiaris]
Length = 304
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
A+Q +Q+ L+++ +PSQP RF K+ L+LP L+ I S +E LFFR IG NT ++K
Sbjct: 238 ALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITSERVELLFFRKTIG-NTPMEK 296
Query: 104 TIWHMYKN 111
+ M+KN
Sbjct: 297 LLCDMFKN 304
>gi|335283229|ref|XP_003354263.1| PREDICTED: COUP transcription factor 1-like isoform 3 [Sus scrofa]
gi|344253194|gb|EGW09298.1| COUP transcription factor 1 [Cricetulus griseus]
Length = 263
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 183 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 241
Query: 104 TIWHM 108
I M
Sbjct: 242 LIRDM 246
>gi|74223617|dbj|BAE28687.1| unnamed protein product [Mus musculus]
Length = 337
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 183 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 241
Query: 104 TIWHM 108
I M
Sbjct: 242 LIRDM 246
>gi|403256259|ref|XP_003920806.1| PREDICTED: COUP transcription factor 1 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 281
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 201 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 259
Query: 104 TIWHM 108
I M
Sbjct: 260 LIRDM 264
>gi|312374365|gb|EFR21934.1| hypothetical protein AND_16007 [Anopheles darlingi]
Length = 162
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 84 SLQEKSQCALEEYCRSQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIET 142
Query: 104 TIWHM 108
I M
Sbjct: 143 LIRDM 147
>gi|240978306|ref|XP_002402921.1| coup transcription factor, putative [Ixodes scapularis]
gi|215491245|gb|EEC00886.1| coup transcription factor, putative [Ixodes scapularis]
Length = 236
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 34/48 (70%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFF 91
++Q +Q L +Y T YP+QPTRF K+ L LP L+++ S V+E+LFF
Sbjct: 28 SLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF 75
>gi|395736005|ref|XP_002815781.2| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1 [Pongo
abelii]
Length = 422
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 35/48 (72%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFF 91
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF
Sbjct: 343 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 390
>gi|47196001|emb|CAF94879.1| unnamed protein product [Tetraodon nigroviridis]
Length = 132
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
+Q +Q L +Y+ YP+QP RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 54 GLQEKSQCALEEYVRAQYPNQPNRFGKLLLRLPSLRTVSSAVIEQLFFIRLVG-KTPIET 112
Query: 104 TIWHM 108
I M
Sbjct: 113 LIRDM 117
>gi|156387775|ref|XP_001634378.1| predicted protein [Nematostella vectensis]
gi|156221460|gb|EDO42315.1| predicted protein [Nematostella vectensis]
Length = 351
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/51 (45%), Positives = 36/51 (70%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNII 95
+Q +Q L +YI + YPSQPTRF K+ L+L L+ + S V+E+LFF +++
Sbjct: 265 LQDTSQSSLEQYIRSQYPSQPTRFGKLLLMLSSLRKVESTVIEQLFFADVL 315
>gi|391338722|ref|XP_003743704.1| PREDICTED: steroid receptor seven-up, isoforms B/C-like
[Metaseiulus occidentalis]
Length = 394
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q TQ L +Y YP QP+RF K+ L LP L+++ S +E LFF ++G T+I+
Sbjct: 317 SLQEKTQSSLEEYCRAQYPQQPSRFGKLLLRLPSLRTVSSQTIEHLFFVRLVG-KTSIET 375
Query: 104 TIWHM 108
I M
Sbjct: 376 LIRDM 380
>gi|47209636|emb|CAF93476.1| unnamed protein product [Tetraodon nigroviridis]
Length = 467
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q +Q+ L ++I + Y SQP RF K+ L+LP L+ + S +E LFF IG NT ++K
Sbjct: 402 LQDQSQVMLGQHIRSHYSSQPARFGKLLLLLPSLRFVASERIELLFFHRTIG-NTPMEKL 460
Query: 105 IWHMYKN 111
+ M+KN
Sbjct: 461 LCDMFKN 467
>gi|321477464|gb|EFX88423.1| hypothetical protein DAPPUDRAFT_311322 [Daphnia pulex]
Length = 364
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y T Y +QP RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 286 SLQEKSQCALEEYCRTQYANQPVRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIET 344
Query: 104 TIWHM 108
I M
Sbjct: 345 LIRDM 349
>gi|391329670|ref|XP_003739292.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Metaseiulus occidentalis]
Length = 201
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q Q L Y+ YP QPTRF ++ L+LP L+SI ++ +E+LFF+ IG N ++K
Sbjct: 132 LQDRAQCVLGDYVRERYPRQPTRFGRLLLLLPILRSISNVFIEKLFFKGTIG-NIRVEKI 190
Query: 105 IWHMY 109
+ MY
Sbjct: 191 LGEMY 195
>gi|72148318|ref|XP_795547.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Strongylocentrotus purpuratus]
Length = 483
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 6 LTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQP 65
L L + T E + LE + +R K+ +F + +Q+ L +Y + V+P P
Sbjct: 385 LRTLNLSTHEFAFLEAIVLFKPDTKGTLREKSKVEF---FRDQSQVVLAQYENIVHPESP 441
Query: 66 TRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 108
RF K+ L +P LK + + LEELFFR +G I+K + M
Sbjct: 442 ARFGKLLLTMPALKRVGTENLEELFFRRTLG-KVQIEKILERM 483
>gi|189095956|pdb|2Q60|A Chain A, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
gi|189095957|pdb|2Q60|B Chain B, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
gi|189095958|pdb|2Q60|C Chain C, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
gi|189095959|pdb|2Q60|D Chain D, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
Length = 258
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 52/110 (47%), Gaps = 15/110 (13%)
Query: 1 MFQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTV 60
M +TEL LR V N + ++N S +R K + A Y +
Sbjct: 157 MDKTELGCLRAVVLFNPD--VKNPSDSAHIESLREKVYASLEA------------YCRSK 202
Query: 61 YPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 110
YP QP RF K+ L LP L+SI LE LFF +IG +T I K + +M +
Sbjct: 203 YPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDKFLMNMLE 251
>gi|291241519|ref|XP_002740657.1| PREDICTED: Orphan nuclear receptor NR6A1, putative-like
[Saccoglossus kowalevskii]
Length = 404
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 32 RVRFKTGSKFTAAI---QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEE 88
+V FK G T + Q Q+ L +Y+++ P P RF K+ L L L++ S ++EE
Sbjct: 326 KVNFKEGLGNTQQVEFLQDQAQLILAQYVNSKTPQNPARFGKLLLTLASLRTYKSEIIEE 385
Query: 89 LFFRNIIG 96
LFFR IG
Sbjct: 386 LFFRKTIG 393
>gi|443687228|gb|ELT90277.1| hypothetical protein CAPTEDRAFT_177303 [Capitella teleta]
Length = 352
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 37/64 (57%)
Query: 33 VRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 92
V + GS A++ ++ L +Y+ V P+ PT+FCK+ + LKSI + +E FFR
Sbjct: 274 VDYSQGSPSIGALRDQAKLSLAQYVSYVSPNSPTKFCKLLGAMSSLKSISAAEVECFFFR 333
Query: 93 NIIG 96
+IG
Sbjct: 334 GVIG 337
>gi|291225515|ref|XP_002732745.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
Length = 405
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q Q+ L +Y H +PSQ RF ++ L+LP LK++ + +EE+FFR IG + I++
Sbjct: 339 LQDQAQLMLGEYTHARFPSQRVRFGRLLLLLPALKAVSARAIEEIFFRRTIG-SIPIERL 397
Query: 105 IWHMYKNA 112
+ M+K++
Sbjct: 398 LCDMFKSS 405
>gi|241651520|ref|XP_002411276.1| retinoid X receptor, putative [Ixodes scapularis]
gi|215503906|gb|EEC13400.1| retinoid X receptor, putative [Ixodes scapularis]
Length = 370
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q Q L YI +P QPTRF ++ L+LP L++I + +E LFF++ IG N I++
Sbjct: 301 LQDQAQCVLGDYIRHKHPRQPTRFGRLLLLLPSLRAISAATVERLFFKDTIG-NIPIERI 359
Query: 105 IWHMY 109
+ MY
Sbjct: 360 LGDMY 364
>gi|263506139|sp|Q9TTF0.2|NR2E3_BOVIN RecName: Full=Photoreceptor-specific nuclear receptor; AltName:
Full=Nuclear receptor subfamily 2 group E member 3;
AltName: Full=Retina-specific nuclear receptor
Length = 411
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
A+Q +Q+ L+++ +PSQ RF K+ L+LP L+ I S +E LFFR IG NT ++K
Sbjct: 345 ALQDQSQVMLSQHSKAHHPSQLVRFGKLLLLLPSLRFISSERVELLFFRKTIG-NTPMEK 403
Query: 104 TIWHMYKN 111
+ M+KN
Sbjct: 404 LLCDMFKN 411
>gi|328696467|ref|XP_003240033.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Acyrthosiphon pisum]
Length = 459
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q Q L Y+ Y QPTRF ++ L+LP L+++ +E LFF+ IG + I++
Sbjct: 389 LQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPNLRAVRQATIERLFFKETIG-DIPIQRL 447
Query: 105 IWHMY 109
+ MY
Sbjct: 448 LGDMY 452
>gi|6681852|gb|AAF15392.2|AF107729_1 paraneoplastic retinopathy associated protein De [Bos taurus]
Length = 427
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
A+Q +Q+ L+++ +PSQ RF K+ L+LP L+ I S +E LFFR IG NT ++K
Sbjct: 361 ALQDQSQVMLSQHSKAHHPSQLVRFGKLLLLLPSLRFISSERVELLFFRKTIG-NTPMEK 419
Query: 104 TIWHMYKN 111
+ M+KN
Sbjct: 420 LLCDMFKN 427
>gi|397491841|ref|XP_003816848.1| PREDICTED: COUP transcription factor 2 [Pan paniscus]
Length = 367
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 34/47 (72%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELF 90
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LF
Sbjct: 317 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLF 363
>gi|118343705|ref|NP_001071673.1| nuclear receptor [Ciona intestinalis]
gi|70569140|dbj|BAE06356.1| nuclear receptor [Ciona intestinalis]
Length = 416
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ YP+QP+RF K+ L LP L+++ + +E+LFF ++G T I+
Sbjct: 337 SVQEKSQCALEEYVRHQYPNQPSRFGKLLLRLPSLRTVSASAIEQLFFVRLVG-KTPIET 395
Query: 104 TIWHM 108
I M
Sbjct: 396 LIRDM 400
>gi|72099629|ref|XP_789465.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Strongylocentrotus purpuratus]
Length = 457
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 34/53 (64%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
++Q Q+ L Y+ + SQP RF ++ L+L L+++ S LE+LFF+ IIG
Sbjct: 390 SLQDQAQVMLGDYVRYAHLSQPPRFGRLLLMLSALRAVSSKFLEKLFFKQIIG 442
>gi|395825625|ref|XP_003786025.1| PREDICTED: COUP transcription factor 1 [Otolemur garnettii]
Length = 267
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 35/48 (72%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFF 91
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF
Sbjct: 193 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 240
>gi|357627327|gb|EHJ77063.1| putative Orphan nuclear receptor NR2E1 [Danaus plexippus]
Length = 390
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 43 AAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIK 102
A++Q H+Q LN+YI +YP TR ++ L ++++ S + ELFFR IG + I+
Sbjct: 318 ASLQDHSQAVLNEYITRLYPGDTTRSNQLLQSLSAVRNVSSTTIVELFFRATIG-DIPIE 376
Query: 103 KTIWHMYKNA 112
+ I MY++
Sbjct: 377 RIISDMYRSG 386
>gi|55140659|gb|AAV41874.1| tailless [Musca domestica]
Length = 442
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 16 NSNLEIRNAY-TSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLI 74
NS+L N S + R S AA+ ++ L YI ++P QP RF I +
Sbjct: 344 NSSLSTSNGSPNSSISAESRGLIESTKIAALHDESRNALIGYIARLHPGQPMRFQSIMSV 403
Query: 75 LPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 109
L ++ + S +EELFFR IG + TI + I MY
Sbjct: 404 LTQMHKVSSFAIEELFFRKTIG-DITIVRLIGDMY 437
>gi|426228806|ref|XP_004008487.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
F member 6, partial [Ovis aries]
Length = 382
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILP-----RLKSIPSLVLEELFFRNIIGHN 98
++Q Q+ L +Y+ YPSQP RF ++ L LP R +++P+ ++ +LFF ++G
Sbjct: 299 SLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALGARRARAVPASLISQLFFMRLVG-K 357
Query: 99 TTIKKTIWHM 108
T I+ I M
Sbjct: 358 TPIETLIRDM 367
>gi|390341307|ref|XP_794533.3| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Strongylocentrotus purpuratus]
Length = 410
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 7/84 (8%)
Query: 33 VRFKT---GSKFTAAI---QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVL 86
V FKT G K T+++ Q +Q+ L+KYI + +QP RF K+ L+LP +++I L
Sbjct: 323 VIFKTDISGIKETSSVVTLQDQSQLALSKYITVRHQTQPYRFGKLLLLLPSVRAIRPTTL 382
Query: 87 EELFFRNIIGHNTTIKKTIWHMYK 110
E++FF +G +T + +YK
Sbjct: 383 EQIFFWKAVG-STPFHTLLTDLYK 405
>gi|301087323|gb|ADK60866.1| retinoid X receptor [Haliotis diversicolor]
Length = 441
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 33 VRFKTGSKFTAAIQGHTQI------FLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVL 86
V F +K +A+Q Q+ L +Y T YP +P RF K+ L LP L+SI L
Sbjct: 353 VLFNPDAKGLSAVQEVEQLREKVYASLEEYCKTRYPDEPGRFAKLLLRLPALRSIGLKCL 412
Query: 87 EELFFRNIIGHNTTIKKTIWHMYKN 111
E LFF +IG +T I + M +N
Sbjct: 413 EHLFFFKLIG-DTPIDTFLMEMLEN 436
>gi|259013303|ref|NP_001158447.1| photoreceptor-specific nuclear receptor protein [Saccoglossus
kowalevskii]
gi|196475499|gb|ACG76360.1| photoreceptor-specific nuclear receptor protein [Saccoglossus
kowalevskii]
Length = 439
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q Q+ L ++ +P+QPTRF ++ L+LP L+ + +E LFF + IG NT +++
Sbjct: 375 LQDQAQLMLGQHTRN-HPTQPTRFGRLLLMLPSLRFVTPNRIENLFFHHTIG-NTPMERL 432
Query: 105 IWHMYKN 111
+ M+KN
Sbjct: 433 LCDMFKN 439
>gi|419590185|dbj|BAM66778.1| retinoid X receptor [Polyandrocarpa misakiensis]
Length = 539
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 37/108 (34%), Positives = 51/108 (47%), Gaps = 15/108 (13%)
Query: 1 MFQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTV 60
M +TEL LR + N +++N S +R K + A Y +
Sbjct: 412 MDKTELGCLRAIVLFNP--DVKNLSDSAHIESLREKVYASLEA------------YCRSK 457
Query: 61 YPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 108
YP QP RF K+ L LP L+SI LE LFF +IG +T I K + +M
Sbjct: 458 YPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDKFLMNM 504
>gi|221120884|ref|XP_002159396.1| PREDICTED: COUP transcription factor 2-like [Hydra magnipapillata]
Length = 500
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 40 KFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
++ +Q T L YI T YP QPTRF K+ L P ++ I + V+E+LFF ++G
Sbjct: 415 QYIETLQEKTYFALEDYIKTQYPLQPTRFGKLLLRFPSIRIISATVIEQLFFVRLVG 471
>gi|5631312|dbj|BAA82618.1| retinoid X receptor [Polyandrocarpa misakiensis]
Length = 363
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 37/108 (34%), Positives = 51/108 (47%), Gaps = 15/108 (13%)
Query: 1 MFQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTV 60
M +TEL LR + N +++N S +R K + A Y +
Sbjct: 236 MDKTELGCLRAIVLFNP--DVKNLSDSAHIESLREKVYASLEA------------YCRSK 281
Query: 61 YPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 108
YP QP RF K+ L LP L+SI LE LFF +IG +T I K + +M
Sbjct: 282 YPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDKFLMNM 328
>gi|313233664|emb|CBY09835.1| unnamed protein product [Oikopleura dioica]
Length = 490
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
+IQ Q L +Y YP QP+RF ++ L LP ++++ V+E+LFF ++G T I+
Sbjct: 357 SIQEKAQCALEEYTRCQYPGQPSRFGRLLLRLPSVRTVSPHVIEQLFFVRLVG-KTPIET 415
Query: 104 TIWHM 108
I M
Sbjct: 416 LIRDM 420
>gi|390331720|ref|XP_780706.3| PREDICTED: photoreceptor-specific nuclear receptor-like
[Strongylocentrotus purpuratus]
Length = 443
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q + L ++I P+Q RF ++ L+LP L+ + S +E LFFR IG +T +++
Sbjct: 378 LQDQAHMMLTQHIRAHQPAQTARFGRMLLLLPSLRFVTSDQVERLFFRCTIG-DTPMERL 436
Query: 105 IWHMYKN 111
+ M+KN
Sbjct: 437 LCDMFKN 443
>gi|66864094|dbj|BAD99298.1| ultraspiracle [Leptinotarsa decemlineata]
Length = 384
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKN 111
L +Y T +P++P RF K+ L LP L+SI LE LFF +IG + TI I M +N
Sbjct: 323 LEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFRLIG-DVTIDTFITEMLEN 380
>gi|17864126|ref|NP_524596.1| tailless [Drosophila melanogaster]
gi|135913|sp|P18102.1|TLL_DROME RecName: Full=Protein tailless; AltName: Full=Nuclear receptor
subfamily 2 group E member 2
gi|158604|gb|AAA28936.1| tailless (tll) protein [Drosophila melanogaster]
gi|2440022|gb|AAB71371.1| tailless protein [Drosophila melanogaster]
gi|7301986|gb|AAF57091.1| tailless [Drosophila melanogaster]
gi|66571248|gb|AAY51589.1| IP01133p [Drosophila melanogaster]
gi|220943320|gb|ACL84203.1| tll-PA [synthetic construct]
gi|220953302|gb|ACL89194.1| tll-PA [synthetic construct]
Length = 452
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 43 AAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIK 102
AA+ + L+ YI +PSQP RF + ++ + + S +EELFFR IG + TI
Sbjct: 382 AAMHNDARSALHNYIQRTHPSQPMRFQTLLGVVQLMHKVSSFTIEELFFRKTIG-DITIV 440
Query: 103 KTIWHMY 109
+ I MY
Sbjct: 441 RLISDMY 447
>gi|260808486|ref|XP_002599038.1| hypothetical protein BRAFLDRAFT_245659 [Branchiostoma floridae]
gi|229284314|gb|EEN55050.1| hypothetical protein BRAFLDRAFT_245659 [Branchiostoma floridae]
Length = 198
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 29/44 (65%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
LN+Y YP QP RF +I L LP L+SI ++ ELFFR +IG
Sbjct: 139 LNEYTTARYPLQPLRFARILLGLPALRSIKPKIVTELFFRPLIG 182
>gi|195575179|ref|XP_002105557.1| GD21550 [Drosophila simulans]
gi|194201484|gb|EDX15060.1| GD21550 [Drosophila simulans]
Length = 452
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 43 AAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIK 102
AA+ + L+ YI +PSQP RF + ++ + + S +EELFFR IG + TI
Sbjct: 382 AAMHNDARSALHNYIQRTHPSQPMRFQTLLGVVQLMHKVSSFTIEELFFRKTIG-DITIV 440
Query: 103 KTIWHMY 109
+ I MY
Sbjct: 441 RLISDMY 447
>gi|195341628|ref|XP_002037408.1| GM12909 [Drosophila sechellia]
gi|194131524|gb|EDW53567.1| GM12909 [Drosophila sechellia]
Length = 241
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
Query: 13 TEENSNLEIRNAYTSRRGSRVRFKTG---SKFTAAIQGHTQIFLNKYIHTVYPSQPTRFC 69
TE+ +N I S S G S AA+ + L+ YI +PSQP RF
Sbjct: 138 TEDLANSSILTGSGSPNSSASAESRGLLESGKVAAMHNDARSALHNYIQRTHPSQPMRFQ 197
Query: 70 KIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 109
+ +L + + S +EELFFR IG + TI + I MY
Sbjct: 198 TLLGVLQLMHKVSSFTIEELFFRKTIG-DITIVRLISDMY 236
>gi|20302776|gb|AAM18897.1|AF391295_6 unknown [Branchiostoma floridae]
Length = 232
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 112
L +Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M +
Sbjct: 139 LEEYCKQQYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEMLEAP 197
Query: 113 G 113
G
Sbjct: 198 G 198
>gi|195505298|ref|XP_002099444.1| GE10907 [Drosophila yakuba]
gi|194185545|gb|EDW99156.1| GE10907 [Drosophila yakuba]
Length = 452
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 43 AAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIK 102
AA+ + L+ YI +P+QP RF + ++ + + S +EELFFR IG + TI
Sbjct: 382 AAMHNDARSALHNYIQRTHPTQPMRFQTLLGVVQMMHKVSSFTIEELFFRKTIG-DITIV 440
Query: 103 KTIWHMY 109
+ I MY
Sbjct: 441 RLISDMY 447
>gi|194905186|ref|XP_001981146.1| GG11781 [Drosophila erecta]
gi|190655784|gb|EDV53016.1| GG11781 [Drosophila erecta]
Length = 438
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 43 AAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIK 102
AA+ + L+ YI +P+QP RF + ++ + + S +EELFFR IG + TI
Sbjct: 368 AAMHNDARSALHNYIQRTHPAQPMRFQTLLGVVQMMHKVSSFTIEELFFRKTIG-DITIV 426
Query: 103 KTIWHMY 109
+ I MY
Sbjct: 427 RLISDMY 433
>gi|405974187|gb|EKC38851.1| Photoreceptor-specific nuclear receptor [Crassostrea gigas]
Length = 438
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 46 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTI 105
Q Q+ +++++ + YP+Q RF ++ L++P LK +PS +E++FF IG + ++K +
Sbjct: 374 QDQAQMMMSQHVRSNYPTQHIRFGRLLLMIPSLKFVPSDRVEKIFFGRTIG-SVPMEKLL 432
Query: 106 WHMYK 110
M+K
Sbjct: 433 CDMFK 437
>gi|195452812|ref|XP_002073511.1| GK14159 [Drosophila willistoni]
gi|194169596|gb|EDW84497.1| GK14159 [Drosophila willistoni]
Length = 457
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 39 SKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHN 98
S AA+ + L+ YI +P+QP RF + ++ ++ + S +EELFFR IG +
Sbjct: 383 SSKVAAMHNDARNALHNYISRTHPNQPLRFQTLLGVVSQMHKVSSFTIEELFFRKTIG-D 441
Query: 99 TTIKKTIWHMY 109
TI + I MY
Sbjct: 442 ITIVRLISDMY 452
>gi|321465568|gb|EFX76568.1| hypothetical protein DAPPUDRAFT_106791 [Daphnia pulex]
Length = 310
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q Q+ LN++I P +P RF ++ L LP L+ + + LE+L+FR+ IG +T ++K
Sbjct: 245 LQDQAQVMLNQHIRNQQPQRPARFGRLLLTLPLLRHVTAHRLEQLYFRHTIG-STPMEKV 303
Query: 105 IWHMYKN 111
+ MYKN
Sbjct: 304 LCDMYKN 310
>gi|149692277|ref|XP_001495004.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Equus
caballus]
Length = 480
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
A+Q +Q+ L+++ +PSQP RF K+ L+L L+ I S +E LFFR IG NT ++K
Sbjct: 414 ALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLSSLRFITSERVELLFFRKTIG-NTPMEK 472
Query: 104 TIWHMYK 110
+ M+K
Sbjct: 473 LLCDMFK 479
>gi|194765110|ref|XP_001964670.1| GF22927 [Drosophila ananassae]
gi|190614942|gb|EDV30466.1| GF22927 [Drosophila ananassae]
Length = 456
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 43 AAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIK 102
AA+ + L+ YI +P+QP RF + ++ + + S +EELFFR IG + TI
Sbjct: 386 AAMHNDARSALHNYIQRTHPAQPLRFQTLLGVVQLMHKVSSFTIEELFFRKTIG-DITIV 444
Query: 103 KTIWHMY 109
+ I MY
Sbjct: 445 RLISDMY 451
>gi|74902124|sp|Q5I7G2.1|RXR_LYMST RecName: Full=Retinoic acid receptor RXR; AltName: Full=Retinoid X
receptor; Short=LymRXR
gi|57164664|gb|AAW34268.1| retinoid X receptor [Lymnaea stagnalis]
Length = 436
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 33 VRFKTGSKFTAAIQGHTQI------FLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVL 86
V F +K A+Q Q+ L +Y T YP +P RF K+ L LP L+SI L
Sbjct: 348 VLFNPDAKGLTAVQEVEQLREKVYASLEEYTKTRYPEEPGRFAKLLLRLPALRSIGLKCL 407
Query: 87 EELFFRNIIG 96
E LFF +IG
Sbjct: 408 EHLFFFKLIG 417
>gi|156376476|ref|XP_001630386.1| predicted protein [Nematostella vectensis]
gi|156217406|gb|EDO38323.1| predicted protein [Nematostella vectensis]
Length = 358
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 46 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTI 105
Q Q+ L +YI + YP+Q RF ++ L+LP L+ + +L +EELFF+ IG I++ +
Sbjct: 292 QDQAQLMLGEYIRSTYPTQVARFGRLLLLLPALRRVSALAIEELFFKKTIG-TVPIERLL 350
Query: 106 WHMYKN 111
M+KN
Sbjct: 351 SDMFKN 356
>gi|365176244|gb|AEW68002.1| retinoid X receptor [Halocynthia roretzi]
Length = 453
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 26/56 (46%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 108
L Y + YP QP RF K+ L LP L+SI LE LFF +IG +T I K + M
Sbjct: 361 LEAYCRSKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDKFLMDM 415
>gi|21310111|gb|AAM46151.1|AF378829_1 nuclear hormone receptor RXR [Branchiostoma floridae]
Length = 522
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 112
L +Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M +
Sbjct: 429 LEEYCKQQYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEMLEAP 487
Query: 113 G 113
G
Sbjct: 488 G 488
>gi|125772581|ref|XP_001357592.1| GA12521 [Drosophila pseudoobscura pseudoobscura]
gi|195159108|ref|XP_002020424.1| GL13521 [Drosophila persimilis]
gi|54637324|gb|EAL26726.1| GA12521 [Drosophila pseudoobscura pseudoobscura]
gi|194117193|gb|EDW39236.1| GL13521 [Drosophila persimilis]
Length = 454
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 43 AAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIK 102
AA+ + L+ YI +P+QP RF + ++ + + S +EELFFR IG + TI
Sbjct: 384 AAMHNDARSALHNYISRTHPNQPLRFQTLLGVVSMMHKVSSFTIEELFFRKTIG-DITIV 442
Query: 103 KTIWHMY 109
+ I MY
Sbjct: 443 RLISDMY 449
>gi|16565495|gb|AAL26246.1| retinoid X receptor [Petromyzon marinus]
Length = 237
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 28/54 (51%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 97
A+Q L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 183 ALQEKVYASLESYCKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 236
>gi|156374224|ref|XP_001629708.1| predicted protein [Nematostella vectensis]
gi|156216714|gb|EDO37645.1| predicted protein [Nematostella vectensis]
Length = 366
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 37 TGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
T ++ ++Q TQ L +Y YP+QPTRF K+ L LP L+SI S V+E+LFF ++G
Sbjct: 281 TDPQYIESLQEKTQCALEEYTRNQYPNQPTRFGKLLLRLPSLRSISSSVVEQLFFVRLVG 340
>gi|78100924|pdb|1XIU|A Chain A, Crystal Structure Of The Agonist-Bound Ligand-Binding
Domain Of Biomphalaria Glabrata Rxr
gi|78100925|pdb|1XIU|B Chain B, Crystal Structure Of The Agonist-Bound Ligand-Binding
Domain Of Biomphalaria Glabrata Rxr
Length = 230
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 33 VRFKTGSKFTAAIQGHTQI------FLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVL 86
V F +K A+Q Q+ L +Y + YP +P RF K+ L LP L+SI L
Sbjct: 142 VLFNPDAKGLTAVQEVEQLREKVYASLEEYTKSRYPEEPGRFAKLLLRLPALRSIGLKCL 201
Query: 87 EELFFRNIIGHNTTIKKTIWHMYKN 111
E LFF +IG + I + M +N
Sbjct: 202 EHLFFFKLIG-DQPIDTFLMEMLEN 225
>gi|148694040|gb|EDL25987.1| nuclear receptor subfamily 2, group E, member 3, isoform CRA_a [Mus
musculus]
gi|148694041|gb|EDL25988.1| nuclear receptor subfamily 2, group E, member 3, isoform CRA_a [Mus
musculus]
Length = 322
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
A+Q +Q+ L+++ +PSQP RF K+ L+LP L+ + + +E LFFR IG NT ++K
Sbjct: 256 ALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFLTAERIELLFFRKTIG-NTPMEK 314
Query: 104 TIWHMYKN 111
+ M+KN
Sbjct: 315 LLCDMFKN 322
>gi|7305323|ref|NP_038736.1| photoreceptor-specific nuclear receptor [Mus musculus]
gi|10720145|sp|Q9QXZ7.1|NR2E3_MOUSE RecName: Full=Photoreceptor-specific nuclear receptor; AltName:
Full=Nuclear receptor subfamily 2 group E member 3;
AltName: Full=Retina-specific nuclear receptor
gi|6651227|gb|AAF22228.1|AF148129_1 nuclear receptor [Mus musculus]
gi|7770295|gb|AAF69682.1|AF204053_1 photoreceptor specific nuclear receptor [Mus musculus]
gi|17028410|gb|AAH17521.1| Nuclear receptor subfamily 2, group E, member 3 [Mus musculus]
gi|26343545|dbj|BAC35429.1| unnamed protein product [Mus musculus]
gi|148694043|gb|EDL25990.1| nuclear receptor subfamily 2, group E, member 3, isoform CRA_c [Mus
musculus]
Length = 395
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
A+Q +Q+ L+++ +PSQP RF K+ L+LP L+ + + +E LFFR IG NT ++K
Sbjct: 329 ALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFLTAERIELLFFRKTIG-NTPMEK 387
Query: 104 TIWHMYKN 111
+ M+KN
Sbjct: 388 LLCDMFKN 395
>gi|115679027|ref|XP_792757.2| PREDICTED: nuclear receptor subfamily 2 group E member 1-like,
partial [Strongylocentrotus purpuratus]
Length = 297
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 61/114 (53%), Gaps = 7/114 (6%)
Query: 4 TELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKT---GSKFTAAI---QGHTQIFLNKYI 57
+EL +L+ + + L + + + V FKT G K T+++ Q +Q+ L+KYI
Sbjct: 181 SELRVLQELIAKFRQLNVDDTEFACLKGIVIFKTDISGIKETSSVVTLQDQSQLALSKYI 240
Query: 58 HTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKN 111
+ +QP RF K+ L+LP +++I LE++FF +G +T + +YK
Sbjct: 241 TVRHQTQPYRFGKLLLLLPSVRAIRPTTLEQIFFWKAVG-STPFHTLLTDLYKK 293
>gi|195390875|ref|XP_002054093.1| tailless [Drosophila virilis]
gi|194152179|gb|EDW67613.1| tailless [Drosophila virilis]
Length = 450
Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 39 SKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHN 98
S AA+ + L+ YI +P+QP RF + ++ + + S +EELFFR IG +
Sbjct: 376 SSKVAAMHNDARNALHNYISRTHPNQPLRFQTLLGVVTLMHKVSSFTIEELFFRKTIG-D 434
Query: 99 TTIKKTIWHMY 109
TI + I MY
Sbjct: 435 ITIVRLISDMY 445
>gi|291223399|ref|XP_002731697.1| PREDICTED: retinoid X receptor-like protein [Saccoglossus
kowalevskii]
Length = 497
Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 14/96 (14%)
Query: 1 MFQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTV 60
M +TEL LR + N + +N T ++ +R K + L +Y
Sbjct: 398 MDKTELGCLRAIVLFNP--DAKNLGTVQKVEELREKVYAS------------LEEYCRKT 443
Query: 61 YPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
YP +P RF K+ L LP L+SI LE LFF +IG
Sbjct: 444 YPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 479
>gi|390432215|gb|AFL91699.1| retinoid X receptor isoform d [Azumapecten farreri]
Length = 470
Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 27/44 (61%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L +Y T YP +P RF K+ L LP L+SI LE LFF +IG
Sbjct: 408 LEEYSKTRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 451
>gi|390432213|gb|AFL91698.1| retinoid X receptor isoform c [Azumapecten farreri]
Length = 466
Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 27/44 (61%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L +Y T YP +P RF K+ L LP L+SI LE LFF +IG
Sbjct: 404 LEEYSKTRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 447
>gi|390432211|gb|AFL91697.1| retinoid X receptor isoform b [Azumapecten farreri]
Length = 450
Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 27/44 (61%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L +Y T YP +P RF K+ L LP L+SI LE LFF +IG
Sbjct: 388 LEEYSKTRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 431
>gi|390432209|gb|AFL91696.1| retinoid X receptor isoform a [Azumapecten farreri]
Length = 446
Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 27/44 (61%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L +Y T YP +P RF K+ L LP L+SI LE LFF +IG
Sbjct: 384 LEEYSKTRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 427
>gi|6094487|sp|O16845.1|TLL_DROVI RecName: Full=Protein tailless; AltName: Full=Nuclear receptor
subfamily 2 group E member 2
gi|2440021|gb|AAB71370.1| tailless protein [Drosophila virilis]
Length = 450
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 39 SKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHN 98
S AA+ + L+ YI +P+QP RF + ++ + + S +EELFFR IG +
Sbjct: 376 SSKVAAMHNDARNALHNYISRTHPNQPLRFQTLLGVVTLMHKVSSFTIEELFFRKTIG-D 434
Query: 99 TTIKKTIWHMY 109
TI + I MY
Sbjct: 435 ITIVRLISDMY 445
>gi|260828819|ref|XP_002609360.1| hypothetical protein BRAFLDRAFT_236165 [Branchiostoma floridae]
gi|229294716|gb|EEN65370.1| hypothetical protein BRAFLDRAFT_236165 [Branchiostoma floridae]
Length = 427
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 26/44 (59%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L +Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 369 LEEYCKQQYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 412
>gi|195030592|ref|XP_001988152.1| GH11011 [Drosophila grimshawi]
gi|193904152|gb|EDW03019.1| GH11011 [Drosophila grimshawi]
Length = 719
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q Q L+ ++ YP Q TRF ++ L+LP L++I + +E LFF+ IG N I +
Sbjct: 647 LQDQAQCILSDHVRLRYPRQATRFGRLLLLLPSLRTIRAATIEALFFKETIG-NVPIARL 705
Query: 105 IWHMY 109
+ MY
Sbjct: 706 LRDMY 710
>gi|121308144|emb|CAL25729.1| ultraspiracle nuclear receptor [Tribolium castaneum]
Length = 407
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L +Y T +P++P RF K+ L LP L+SI LE LFF +IG
Sbjct: 346 LEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 389
>gi|283464101|gb|ADB22634.1| retinoid X receptor-like protein [Saccoglossus kowalevskii]
Length = 531
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 14/96 (14%)
Query: 1 MFQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTV 60
M +TEL LR + N + +N T ++ +R K + L +Y
Sbjct: 432 MDKTELGCLRAIVLFNP--DAKNLGTVQKVEELREKVYAS------------LEEYCRKT 477
Query: 61 YPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
YP +P RF K+ L LP L+SI LE LFF +IG
Sbjct: 478 YPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 513
>gi|121484053|gb|ABM54354.1| NR2E1 [Pan paniscus]
Length = 53
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 61 YPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 112
YP+QP RF K+ L+LP L+SI +EE+FF+ IG N I + + MYK++
Sbjct: 1 YPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIG-NVPITRLLSDMYKSS 51
>gi|326926346|ref|XP_003209363.1| PREDICTED: LOW QUALITY PROTEIN: photoreceptor-specific nuclear
receptor-like [Meleagris gallopavo]
Length = 395
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q +Q+ L ++ + YP QP RF K+ L+LP L+ + S +E LFFR IG NT ++K
Sbjct: 330 LQDQSQVMLGQHNRSHYPGQPVRFGKLLLLLPALRFLSSERVELLFFRRTIG-NTPMEKL 388
Query: 105 IWHMYKN 111
+ M+KN
Sbjct: 389 LCDMFKN 395
>gi|75017953|sp|Q8T5C6.1|RXR_BIOGL RecName: Full=Retinoic acid receptor RXR; AltName: Full=RXR-like
protein; AltName: Full=Retinoid X receptor; Short=BgRXR
gi|19386469|gb|AAL86461.1| RXR-like protein [Biomphalaria glabrata]
Length = 436
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 33 VRFKTGSKFTAAIQGHTQI------FLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVL 86
V F +K A+Q Q+ L +Y + YP +P RF K+ L LP L+SI L
Sbjct: 348 VLFNPDAKGLTAVQEVEQLREKVYASLEEYTKSRYPEEPGRFAKLLLRLPALRSIGLKCL 407
Query: 87 EELFFRNIIG 96
E LFF +IG
Sbjct: 408 EHLFFFKLIG 417
>gi|282165797|ref|NP_001107766.2| ultraspiracle nuclear receptor [Tribolium castaneum]
gi|270008201|gb|EFA04649.1| ultraspiracle, partial [Tribolium castaneum]
Length = 407
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L +Y T +P++P RF K+ L LP L+SI LE LFF +IG
Sbjct: 346 LEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 389
>gi|195385346|ref|XP_002051367.1| GJ15408 [Drosophila virilis]
gi|194147824|gb|EDW63522.1| GJ15408 [Drosophila virilis]
Length = 726
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q Q L+ ++ YP Q TRF ++ L+LP L++I + +E LFF+ IG N I +
Sbjct: 654 LQDQAQCILSDHVRLRYPRQATRFGRLLLLLPSLRTIRAATIEALFFKETIG-NVPIARL 712
Query: 105 IWHMY 109
+ MY
Sbjct: 713 LRDMY 717
>gi|124431273|gb|ABN11285.1| ultraspiracle protein [Bemisia tabaci]
Length = 251
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 52 FLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKN 111
L +Y YP Q RF K+ L LP L+SI LE LFF ++G NT+I + M ++
Sbjct: 189 ILEEYCRQTYPDQSGRFAKLLLRLPALRSIGLKCLEHLFFFKLVG-NTSIDSFLLSMLES 247
>gi|443691595|gb|ELT93409.1| hypothetical protein CAPTEDRAFT_164614 [Capitella teleta]
Length = 540
Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKN 111
L +Y T YP +P RF K+ L LP L+SI +E LFF +IG +T I + M ++
Sbjct: 478 LEEYCKTHYPEEPGRFAKLLLRLPALRSIGLKCMEHLFFFKLIG-DTPIDSFLMEMLES 535
>gi|348504636|ref|XP_003439867.1| PREDICTED: retinoic acid receptor RXR-gamma-B-like isoform 2
[Oreochromis niloticus]
Length = 407
Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 345 LESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 388
>gi|197941308|gb|ACH78358.1| retinoid X receptor gamma [Sebastiscus marmoratus]
Length = 451
Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 389 LESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 432
>gi|45382987|ref|NP_989925.1| photoreceptor-specific nuclear receptor [Gallus gallus]
gi|15777197|gb|AAL05940.1| photoreceptor-specific nuclear receptor [Gallus gallus]
Length = 406
Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q +Q+ L ++ + YP QP RF K+ L+LP L+ + S +E LFFR IG NT ++K
Sbjct: 341 LQDQSQVMLGQHNRSHYPGQPVRFGKLLLLLPALRFLSSERVELLFFRRTIG-NTPMEKL 399
Query: 105 IWHMYKN 111
+ M+KN
Sbjct: 400 LCDMFKN 406
>gi|62738907|pdb|1Z5X|U Chain U, Hemipteran Ecdysone Receptor Ligand-Binding Domain
Complexed With Ponasterone A
Length = 262
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 52 FLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKN 111
L +Y YP Q RF K+ L LP L+SI LE LFF ++G NT+I + M ++
Sbjct: 200 ILEEYCRQTYPDQSGRFAKLLLRLPALRSIGLKCLEHLFFFKLVG-NTSIDSFLLSMLES 258
>gi|195116317|ref|XP_002002702.1| GI17531 [Drosophila mojavensis]
gi|193913277|gb|EDW12144.1| GI17531 [Drosophila mojavensis]
Length = 736
Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q Q L+ ++ YP Q TRF ++ L+LP L++I + +E LFF+ IG N I +
Sbjct: 664 LQDQAQCILSDHVRLRYPRQATRFGRLLLLLPSLRTIRAATIEALFFKETIG-NVPIARL 722
Query: 105 IWHMY 109
+ MY
Sbjct: 723 LRDMY 727
>gi|443715570|gb|ELU07483.1| hypothetical protein CAPTEDRAFT_224811 [Capitella teleta]
Length = 360
Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q Q+ L +Y + +Q TRF ++ L P L++IP+ ++ +FFR +G N I++
Sbjct: 292 LQDQAQMILAEYSILHHQNQSTRFGRLLLATPALRAIPASLVSRIFFRETVG-NIPIERL 350
Query: 105 IWHMYKN 111
+ +Y+N
Sbjct: 351 VCDIYQN 357
>gi|197941306|gb|ACH78357.1| retinoid X receptor alpha [Sebastiscus marmoratus]
Length = 331
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 108
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 269 LEAYCKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 323
>gi|348504634|ref|XP_003439866.1| PREDICTED: retinoic acid receptor RXR-gamma-B-like isoform 1
[Oreochromis niloticus]
Length = 453
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 391 LESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 434
>gi|328707384|ref|XP_001948870.2| PREDICTED: photoreceptor-specific nuclear receptor-like
[Acyrthosiphon pisum]
Length = 510
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q + L ++ +P QP RF ++ L+LP LK++P+ +E +FF+ IG N ++K
Sbjct: 445 LQDQAHVMLGQHTRNQHPGQPVRFGRLLLMLPLLKNVPAARIEAIFFQRTIG-NIPMEKV 503
Query: 105 IWHMYKN 111
+ MYKN
Sbjct: 504 LCDMYKN 510
>gi|309747087|ref|NP_001026064.2| nuclear receptor subfamily 0 group B member 2 [Gallus gallus]
Length = 262
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%)
Query: 37 TGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
T S + ++Q + L + + ++P RF I LI LKSIP ++ +LFFR IIG
Sbjct: 175 TASLYIESLQREAERALQEVVQILHPKDQDRFALILLITSTLKSIPPALITDLFFRPIIG 234
Query: 97 HNTTIKKTIWHMYK 110
+ ++ + +Y+
Sbjct: 235 NADIVELIVDMLYE 248
>gi|301608498|ref|XP_002933799.1| PREDICTED: retinoic acid receptor RXR-gamma [Xenopus (Silurana)
tropicalis]
Length = 468
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 406 LESYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 449
>gi|113197752|gb|AAI21596.1| LOC779621 protein [Xenopus (Silurana) tropicalis]
Length = 452
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 390 LESYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 433
>gi|148237103|ref|NP_001089591.1| uncharacterized protein LOC734648 [Xenopus laevis]
gi|68533768|gb|AAH99024.1| MGC115510 protein [Xenopus laevis]
Length = 471
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 409 LESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 452
>gi|147902511|ref|NP_001088948.1| retinoid X receptor, gamma [Xenopus laevis]
gi|57032681|gb|AAH88915.1| LOC496325 protein [Xenopus laevis]
Length = 470
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 408 LESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 451
>gi|410986573|ref|XP_003999584.1| PREDICTED: retinoic acid receptor RXR-gamma [Felis catus]
Length = 463
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 401 LEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 444
>gi|301756739|ref|XP_002914218.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Ailuropoda
melanoleuca]
Length = 463
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 401 LEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 444
>gi|444730607|gb|ELW70985.1| Retinoic acid receptor RXR-gamma [Tupaia chinensis]
Length = 425
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 363 LEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 406
>gi|74006096|ref|XP_536146.2| PREDICTED: retinoic acid receptor RXR-gamma isoform 1 [Canis lupus
familiaris]
Length = 463
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 401 LEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 444
>gi|1710810|sp|P51129.1|RXRG_XENLA RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
Length = 470
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 408 LESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 451
>gi|403272547|ref|XP_003928117.1| PREDICTED: retinoic acid receptor RXR-gamma [Saimiri boliviensis
boliviensis]
Length = 463
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 401 LEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 444
>gi|395825135|ref|XP_003785797.1| PREDICTED: retinoic acid receptor RXR-gamma [Otolemur garnettii]
Length = 463
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 401 LEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 444
>gi|344286664|ref|XP_003415077.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Loxodonta
africana]
Length = 489
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 427 LEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 470
>gi|325930187|gb|ADZ45552.1| retinoid X receptor gamma [Taeniopygia guttata]
Length = 468
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 406 LEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 449
>gi|281348859|gb|EFB24443.1| hypothetical protein PANDA_002085 [Ailuropoda melanoleuca]
Length = 447
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 385 LEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 428
>gi|371940918|ref|NP_001243138.1| retinoic acid receptor RXR-gamma [Taeniopygia guttata]
Length = 468
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 406 LEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 449
>gi|189066517|dbj|BAG35767.1| unnamed protein product [Homo sapiens]
Length = 463
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 401 LEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 444
>gi|16797884|gb|AAL29200.1|AF323687_1 nuclear receptor AmNR7 [Acropora millepora]
Length = 368
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 39/60 (65%)
Query: 37 TGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
T ++ ++Q TQ L +Y YP+QPTRF K+ L LP L+SI S ++E+LFF ++G
Sbjct: 283 TDPQYIESLQEKTQCALEEYTRNQYPNQPTRFGKLLLRLPSLRSINSSIVEQLFFVRLVG 342
>gi|197101785|ref|NP_001124824.1| retinoic acid receptor RXR-gamma [Pongo abelii]
gi|402858038|ref|XP_003893537.1| PREDICTED: retinoic acid receptor RXR-gamma [Papio anubis]
gi|75062013|sp|Q5REL6.1|RXRG_PONAB RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|55726030|emb|CAH89791.1| hypothetical protein [Pongo abelii]
Length = 463
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 401 LEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 444
>gi|348565839|ref|XP_003468710.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Cavia porcellus]
Length = 451
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 389 LEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 432
>gi|344236823|gb|EGV92926.1| Retinoic acid receptor RXR-gamma [Cricetulus griseus]
Length = 414
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 352 LEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 395
>gi|195473765|ref|XP_002089163.1| GE25723 [Drosophila yakuba]
gi|194175264|gb|EDW88875.1| GE25723 [Drosophila yakuba]
Length = 691
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q Q L+ ++ YP Q TRF ++ L+LP L++I + +E LFF+ IG N I +
Sbjct: 619 LQDQAQCILSDHVRLRYPRQATRFGRLLLLLPSLRTIRAATIEALFFKETIG-NVPIARL 677
Query: 105 IWHMY 109
+ MY
Sbjct: 678 LRDMY 682
>gi|194856940|ref|XP_001968860.1| GG25103 [Drosophila erecta]
gi|190660727|gb|EDV57919.1| GG25103 [Drosophila erecta]
Length = 693
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q Q L+ ++ YP Q TRF ++ L+LP L++I + +E LFF+ IG N I +
Sbjct: 621 LQDQAQCILSDHVRLRYPRQATRFGRLLLLLPSLRTIRAATIEALFFKETIG-NVPIARL 679
Query: 105 IWHMY 109
+ MY
Sbjct: 680 LRDMY 684
>gi|426332559|ref|XP_004027871.1| PREDICTED: retinoic acid receptor RXR-gamma [Gorilla gorilla
gorilla]
Length = 463
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 401 LEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 444
>gi|84028533|gb|ABC49725.1| retinoid X receptor 2 [Petromyzon marinus]
Length = 512
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 415 LESYCKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 458
>gi|5902068|ref|NP_008848.1| retinoic acid receptor RXR-gamma isoform a [Homo sapiens]
gi|114561087|ref|XP_513962.2| PREDICTED: retinoic acid receptor RXR-gamma isoform 2 [Pan
troglodytes]
gi|397508368|ref|XP_003824630.1| PREDICTED: retinoic acid receptor RXR-gamma [Pan paniscus]
gi|1350913|sp|P48443.1|RXRG_HUMAN RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|1053069|gb|AAA80681.1| retinoid X receptor-gamma [Homo sapiens]
gi|15082315|gb|AAH12063.1| Retinoid X receptor, gamma [Homo sapiens]
gi|48145527|emb|CAG32986.1| RXRG [Homo sapiens]
gi|119611151|gb|EAW90745.1| retinoid X receptor, gamma [Homo sapiens]
gi|190689913|gb|ACE86731.1| retinoid X receptor, gamma protein [synthetic construct]
gi|190691285|gb|ACE87417.1| retinoid X receptor, gamma protein [synthetic construct]
gi|261858858|dbj|BAI45951.1| retinoid X receptor, gamma [synthetic construct]
gi|325495501|gb|ADZ17356.1| retinoid X nuclear receptor gamma variant 1 [Homo sapiens]
gi|326205168|dbj|BAJ83970.1| retinoic acid receptor RXR-gamma [Homo sapiens]
Length = 463
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 401 LEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 444
>gi|332219399|ref|XP_003258843.1| PREDICTED: retinoic acid receptor RXR-gamma [Nomascus leucogenys]
Length = 463
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 401 LEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 444
>gi|296229938|ref|XP_002760488.1| PREDICTED: retinoic acid receptor RXR-gamma [Callithrix jacchus]
Length = 463
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 401 LEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 444
>gi|195342848|ref|XP_002038010.1| GM18580 [Drosophila sechellia]
gi|194132860|gb|EDW54428.1| GM18580 [Drosophila sechellia]
Length = 196
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q Q L+ ++ YP Q TRF ++ L+LP L++I + +E LFF+ IG N I +
Sbjct: 124 LQDQAQCILSDHVRLRYPRQATRFGRLLLLLPSLRTIRAATIEALFFKETIG-NVPIARL 182
Query: 105 IWHMY 109
+ MY
Sbjct: 183 LRDMY 187
>gi|383872390|ref|NP_001244539.1| retinoic acid receptor RXR-gamma [Macaca mulatta]
gi|355558991|gb|EHH15771.1| hypothetical protein EGK_01907 [Macaca mulatta]
gi|355746155|gb|EHH50780.1| hypothetical protein EGM_01657 [Macaca fascicularis]
gi|380815424|gb|AFE79586.1| retinoic acid receptor RXR-gamma isoform a [Macaca mulatta]
Length = 463
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 401 LEAYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 444
>gi|432856175|ref|XP_004068390.1| PREDICTED: retinoic acid receptor RXR-gamma-B [Oryzias latipes]
Length = 455
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 393 LEAYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 436
>gi|440910600|gb|ELR60380.1| Retinoic acid receptor RXR-gamma, partial [Bos grunniens mutus]
Length = 447
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 385 LEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 428
>gi|6677829|ref|NP_033133.1| retinoic acid receptor RXR-gamma isoform 1 [Mus musculus]
gi|1350914|sp|P28705.2|RXRG_MOUSE RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|200882|gb|AAA40082.1| retinoid X receptor-gamma [Mus musculus]
gi|386367|gb|AAB27244.1| retinoid-X receptor-gamma isoform 1 [Mus sp.]
gi|34849539|gb|AAH58401.1| Retinoid X receptor gamma [Mus musculus]
gi|148707231|gb|EDL39178.1| retinoid X receptor gamma [Mus musculus]
Length = 463
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 25/56 (44%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 108
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 401 LEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDSFLMEM 455
>gi|211939465|pdb|3EYB|A Chain A, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
gi|211939466|pdb|3EYB|B Chain B, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
gi|211939467|pdb|3EYB|C Chain C, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
gi|211939468|pdb|3EYB|D Chain D, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
Length = 219
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 108
L +Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 164 LEEYCKQQYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 218
>gi|409194686|gb|AFV31633.1| retinoic X receptor gamma, partial [Acanthopagrus schlegelii]
Length = 453
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 391 LESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 434
>gi|216409720|dbj|BAH02297.1| retinoid X receptor-gamma [Homo sapiens]
Length = 463
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 401 LGAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 444
>gi|194760978|ref|XP_001962709.1| GF15588 [Drosophila ananassae]
gi|190616406|gb|EDV31930.1| GF15588 [Drosophila ananassae]
Length = 702
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q Q L+ ++ YP Q TRF ++ L+LP L++I + +E LFF+ IG N I +
Sbjct: 629 LQDQAQCILSDHVRLRYPRQATRFGRLLLLLPSLRTIRAATIEALFFKETIG-NVPIARL 687
Query: 105 IWHMY 109
+ MY
Sbjct: 688 LRDMY 692
>gi|351696221|gb|EHA99139.1| Retinoic acid receptor RXR-gamma [Heterocephalus glaber]
Length = 463
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 401 LEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 444
>gi|354486852|ref|XP_003505591.1| PREDICTED: LOW QUALITY PROTEIN: retinoic acid receptor
RXR-gamma-like [Cricetulus griseus]
Length = 463
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 401 LEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 444
>gi|426217053|ref|XP_004002768.1| PREDICTED: retinoic acid receptor RXR-gamma [Ovis aries]
Length = 463
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 401 LEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 444
>gi|54026|emb|CAA46964.1| retinoid X receptor-gamma [Mus musculus]
Length = 463
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 25/56 (44%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 108
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 401 LEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDSFLMEM 455
>gi|40886675|gb|AAR96256.1| retinoid X receptor gamma [Sus scrofa]
Length = 431
Score = 44.3 bits (103), Expect = 0.011, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 369 LEXYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 412
>gi|449268313|gb|EMC79183.1| Retinoic acid receptor RXR-gamma, partial [Columba livia]
Length = 451
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 389 LEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 432
>gi|115495279|ref|NP_001068876.1| retinoic acid receptor RXR-gamma [Bos taurus]
gi|119367365|sp|Q0VC20.1|RXRG_BOVIN RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|111305288|gb|AAI20392.1| Retinoid X receptor, gamma [Bos taurus]
gi|296489911|tpg|DAA32024.1| TPA: retinoic acid receptor RXR-gamma [Bos taurus]
Length = 463
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 401 LEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 444
>gi|61657903|ref|NP_113953.1| retinoic acid receptor RXR-gamma [Rattus norvegicus]
gi|81888393|sp|Q5BJR8.1|RXRG_RAT RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|60551535|gb|AAH91363.1| Retinoid X receptor gamma [Rattus norvegicus]
gi|149058122|gb|EDM09279.1| retinoid X receptor gamma, isoform CRA_a [Rattus norvegicus]
Length = 463
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 401 LEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 444
>gi|167016572|sp|Q0GFF6.2|RXRG_PIG RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
Length = 463
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 401 LEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 444
>gi|194332487|ref|NP_001123685.1| retinoic acid receptor RXR-gamma [Sus scrofa]
gi|112820329|gb|ABI24018.1| retinoid X receptor gamma [Sus scrofa]
Length = 463
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 401 LEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 444
>gi|17137164|ref|NP_477140.1| dissatisfaction, isoform A [Drosophila melanogaster]
gi|442626233|ref|NP_001260109.1| dissatisfaction, isoform B [Drosophila melanogaster]
gi|7297033|gb|AAF52303.1| dissatisfaction, isoform A [Drosophila melanogaster]
gi|440213405|gb|AGB92645.1| dissatisfaction, isoform B [Drosophila melanogaster]
Length = 691
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q Q L+ ++ YP Q TRF ++ L+LP L++I + +E LFF+ IG N I +
Sbjct: 619 LQDQAQCILSDHVRLRYPRQATRFGRLLLLLPSLRTIRAATIEALFFKETIG-NVPIARL 677
Query: 105 IWHMY 109
+ MY
Sbjct: 678 LRDMY 682
>gi|1710719|sp|P51128.1|RXRA_XENLA RecName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Nuclear receptor subfamily 2 group B member 1;
AltName: Full=Retinoid X receptor alpha
Length = 488
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 426 LEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 469
>gi|432888946|ref|XP_004075101.1| PREDICTED: retinoic acid receptor RXR-alpha-A [Oryzias latipes]
Length = 471
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 409 LEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 452
>gi|4160012|gb|AAD05225.1| dissatisfaction [Drosophila melanogaster]
Length = 693
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q Q L+ ++ YP Q TRF ++ L+LP L++I + +E LFF+ IG N I +
Sbjct: 621 LQDQAQCILSDHVRLRYPRQATRFGRLLLLLPSLRTIRAATIEALFFKETIG-NVPIARL 679
Query: 105 IWHMY 109
+ MY
Sbjct: 680 LRDMY 684
>gi|403301502|ref|XP_003941427.1| PREDICTED: retinoic acid receptor RXR-alpha [Saimiri boliviensis
boliviensis]
Length = 365
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 303 LEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 346
>gi|348505482|ref|XP_003440290.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like [Oreochromis
niloticus]
Length = 781
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 719 LEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 762
>gi|301611491|ref|XP_002935274.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Xenopus
(Silurana) tropicalis]
Length = 459
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 397 LEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 440
>gi|296191131|ref|XP_002743523.1| PREDICTED: retinoic acid receptor RXR-alpha [Callithrix jacchus]
Length = 603
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 541 LEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 584
>gi|355717631|gb|AES06001.1| retinoid X receptor, gamma [Mustela putorius furo]
Length = 249
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 110
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M +
Sbjct: 187 LEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEMLE 243
>gi|45384256|ref|NP_990625.1| retinoic acid receptor RXR-gamma [Gallus gallus]
gi|133700|sp|P28701.1|RXRG_CHICK RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|63496|emb|CAA41743.1| retinoic acid receptor [Gallus gallus]
Length = 467
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 405 LEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 448
>gi|363740474|ref|XP_003642339.1| PREDICTED: retinoic acid receptor RXR-alpha [Gallus gallus]
Length = 467
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 405 LEAYCKHKYPDQPGRFAKLLLRLPALRSISLKCLEHLFFFKLIG 448
>gi|195113207|ref|XP_002001159.1| GI22125 [Drosophila mojavensis]
gi|193917753|gb|EDW16620.1| GI22125 [Drosophila mojavensis]
Length = 450
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 39 SKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHN 98
S A++ + L+ YI +P+QP RF + ++ + + S +EELFFR IG +
Sbjct: 376 SNKVASMHNDARNALHNYISRTHPNQPLRFQTLLGVVSLMHKVSSFTIEELFFRKTIG-D 434
Query: 99 TTIKKTIWHMY 109
TI + I MY
Sbjct: 435 ITIVRLISDMY 445
>gi|426225979|ref|XP_004007135.1| PREDICTED: uncharacterized protein LOC101108039 [Ovis aries]
Length = 873
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 26/44 (59%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF ++IG
Sbjct: 526 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFHLIG 569
>gi|228480295|ref|NP_001153203.1| retinoic acid receptor RXR-gamma isoform 2 [Mus musculus]
gi|386369|gb|AAB27245.1| retinoid-X receptor-gamma isoform 2 [Mus sp.]
Length = 340
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 25/56 (44%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 108
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 278 LEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDSFLMEM 332
>gi|375151577|ref|NP_001243499.1| retinoic acid receptor RXR-gamma isoform c [Homo sapiens]
gi|375151581|ref|NP_001243500.1| retinoic acid receptor RXR-gamma isoform c [Homo sapiens]
gi|410034069|ref|XP_003949681.1| PREDICTED: retinoic acid receptor RXR-gamma [Pan troglodytes]
gi|410034071|ref|XP_003949682.1| PREDICTED: retinoic acid receptor RXR-gamma [Pan troglodytes]
Length = 340
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 278 LEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 321
>gi|291397512|ref|XP_002715914.1| PREDICTED: retinoid X receptor gamma [Oryctolagus cuniculus]
gi|262263191|dbj|BAI48098.1| retinoid X receptor, gamma [Sus scrofa]
Length = 340
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 278 LEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 321
>gi|70799020|gb|AAZ09200.1| retinoid X receptor alpha protein [Bos taurus]
Length = 152
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 110
L Y YP QP RF K+ L LP L+S+ LE LFF +IG +T I + M +
Sbjct: 90 LGAYCKHKYPEQPGRFAKLLLRLPALRSVGLKCLEHLFFFKLIG-DTPIDTFLMEMLE 146
>gi|405966658|gb|EKC31918.1| Nuclear receptor subfamily 2 group C member 2 [Crassostrea gigas]
Length = 707
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
+Q Q L ++ +PS P R K+ L LP L S+ V+EELFF +IG
Sbjct: 584 VQDRAQRELANHVRQTHPSNPDRLAKLLLRLPALHSLSPSVMEELFFAGLIG 635
>gi|146332014|gb|ABQ22513.1| retinoic acid receptor RXR-alpha-like protein [Callithrix jacchus]
Length = 187
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 110
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M +
Sbjct: 125 LEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEMLE 181
>gi|334321961|ref|XP_001370409.2| PREDICTED: retinoic acid receptor RXR-gamma-like [Monodelphis
domestica]
Length = 473
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 411 LEAYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 454
>gi|302202572|gb|ADL09403.1| retinoid X receptor [Gryllus firmus]
Length = 403
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L +Y T +P +P RF K+ L LP L+SI LE LFF +IG
Sbjct: 342 LEEYTRTTHPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFRLIG 385
>gi|410921388|ref|XP_003974165.1| PREDICTED: retinoic acid receptor RXR-gamma-B-like [Takifugu
rubripes]
Length = 462
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 400 LESYTKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 443
>gi|314955556|gb|ADT64885.1| retinoid X receptor [Gryllus firmus]
Length = 403
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L +Y T +P +P RF K+ L LP L+SI LE LFF +IG
Sbjct: 342 LEEYTRTTHPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFRLIG 385
>gi|195061143|ref|XP_001995934.1| GH14219 [Drosophila grimshawi]
gi|193891726|gb|EDV90592.1| GH14219 [Drosophila grimshawi]
Length = 445
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 39 SKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHN 98
S A + + L+ YI +P+QP RF + ++ + + S +EELFFR IG +
Sbjct: 371 SSKVAGMHNDARNALHNYISRTHPNQPLRFQTLLGVVSLMHKVSSFTIEELFFRKTIG-D 429
Query: 99 TTIKKTIWHMY 109
TI + I MY
Sbjct: 430 ITIVRLISDMY 440
>gi|152149581|pdb|2GL8|A Chain A, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
gi|152149582|pdb|2GL8|B Chain B, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
gi|152149583|pdb|2GL8|C Chain C, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
gi|152149584|pdb|2GL8|D Chain D, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
Length = 241
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 110
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M +
Sbjct: 179 LEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEMLE 235
>gi|27819113|gb|AAO22211.1| retinoid X receptor alpha [Carassius auratus]
Length = 297
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 110
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M +
Sbjct: 235 LEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEMLE 291
>gi|146332495|gb|ABQ22753.1| retinoic acid receptor RXR-gamma-like protein [Callithrix jacchus]
Length = 126
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 110
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M +
Sbjct: 64 LEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEMLE 120
>gi|181330916|ref|NP_001116766.1| nuclear receptor subfamily 2 group C member 2 [Danio rerio]
Length = 623
Score = 43.9 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 46 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTI 105
Q Q+ L Y+ YP + R +I L LP L+ + S + EELFF +IG N I I
Sbjct: 545 QEKAQMELQDYVQKTYPDETYRLARILLRLPALRLMSSSITEELFFTGLIG-NVPIDSII 603
Query: 106 WHMYK 110
++ K
Sbjct: 604 PYILK 608
>gi|126513141|gb|ABO15684.1| retinoid X receptor alpha, partial [Latris lineata]
Length = 274
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 108
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 219 LEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFRLIG-DTPIDTFLMEM 273
>gi|146186456|gb|ABQ09280.1| retinoid X receptor alpha 1 [Oryzias latipes]
Length = 250
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 108
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 195 LEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 249
>gi|74209898|dbj|BAE21258.1| unnamed protein product [Mus musculus]
Length = 115
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 110
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M +
Sbjct: 53 LEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDSFLMEMLE 109
>gi|326932850|ref|XP_003212525.1| PREDICTED: nuclear receptor subfamily 0 group B member 2-like
[Meleagris gallopavo]
Length = 268
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 37 TGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
T S + ++Q + L + + ++P RF I LI LKSIP ++ +LFFR +IG
Sbjct: 181 TASLYIESLQREAERALQEVVRILHPEDQDRFALILLITSTLKSIPPALITDLFFRPVIG 240
Query: 97 HNTTIKKTIWHMYK 110
+ ++ + +Y+
Sbjct: 241 NADIVELIVDMLYE 254
>gi|149039210|gb|EDL93430.1| retinoid X receptor alpha, isoform CRA_b [Rattus norvegicus]
Length = 439
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 377 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 420
>gi|444518523|gb|ELV12209.1| Retinoic acid receptor RXR-alpha [Tupaia chinensis]
Length = 386
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 324 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 367
>gi|400270857|gb|AFP75252.1| retinoid X receptor, partial [Tupaia belangeri]
Length = 431
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 369 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 412
>gi|441623802|ref|XP_003279685.2| PREDICTED: retinoic acid receptor RXR-alpha [Nomascus leucogenys]
Length = 418
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 356 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 399
>gi|440904694|gb|ELR55168.1| Retinoic acid receptor RXR-alpha, partial [Bos grunniens mutus]
Length = 485
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 423 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 466
>gi|431898965|gb|ELK07335.1| Retinoic acid receptor RXR-alpha [Pteropus alecto]
Length = 439
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 377 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 420
>gi|1685271|gb|AAB36777.1| RXR alpha 2 [Mus musculus]
gi|1685273|gb|AAB36778.1| RXR alpha 3 [Mus musculus]
Length = 439
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 377 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 420
>gi|16580815|dbj|BAB71758.1| retinoid X receptor alpha [Paralichthys olivaceus]
Length = 292
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 25/45 (55%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 97
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 243 LESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 287
>gi|417515778|gb|JAA53699.1| retinoic acid receptor RXR-alpha [Sus scrofa]
Length = 467
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 405 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 448
>gi|417401446|gb|JAA47609.1| Putative retinoic acid receptor rxr-alpha [Desmodus rotundus]
Length = 467
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 405 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 448
>gi|410979449|ref|XP_003996096.1| PREDICTED: retinoic acid receptor RXR-alpha [Felis catus]
Length = 527
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 465 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 508
>gi|395844547|ref|XP_003795021.1| PREDICTED: retinoic acid receptor RXR-alpha [Otolemur garnettii]
Length = 487
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 425 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 468
>gi|359070758|ref|XP_002691733.2| PREDICTED: retinoic acid receptor RXR-alpha [Bos taurus]
Length = 756
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 694 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 737
>gi|358414696|ref|XP_887036.4| PREDICTED: retinoic acid receptor RXR-alpha isoform 4 [Bos taurus]
Length = 557
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 495 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 538
>gi|351702679|gb|EHB05598.1| Retinoic acid receptor RXR-gamma-A [Heterocephalus glaber]
Length = 616
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 554 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 597
>gi|348574546|ref|XP_003473051.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Cavia porcellus]
Length = 549
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 487 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 530
>gi|354501950|ref|XP_003513051.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Cricetulus
griseus]
gi|344245296|gb|EGW01400.1| Retinoic acid receptor RXR-alpha [Cricetulus griseus]
Length = 439
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 377 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 420
>gi|296481981|tpg|DAA24096.1| TPA: retinoid X receptor, alpha [Bos taurus]
Length = 404
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 342 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 385
>gi|194225999|ref|XP_001917400.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Equus caballus]
Length = 587
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 525 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 568
>gi|397503782|ref|XP_003822498.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Pan paniscus]
gi|402896147|ref|XP_003911168.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Papio anubis]
gi|410043384|ref|XP_520345.4| PREDICTED: retinoic acid receptor RXR-alpha [Pan troglodytes]
gi|193785958|dbj|BAG54745.1| unnamed protein product [Homo sapiens]
Length = 365
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 303 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 346
>gi|157831763|pdb|1LBD|A Chain A, Ligand-Binding Domain Of The Human Nuclear Receptor
Rxr-Alpha
Length = 282
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 110
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M +
Sbjct: 220 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEMLE 276
>gi|3098334|gb|AAC15588.1| retinoid X receptor [Amblyomma americanum]
Length = 400
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 29/51 (56%)
Query: 46 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
+G + L ++ YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 332 EGESVSALEEHCRQQYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 382
>gi|314955486|gb|ADT64884.1| retinoid X receptor [Gryllus firmus]
Length = 403
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L +Y T +P +P RF K+ L LP L+SI LE LFF +IG
Sbjct: 342 LEEYTRTTHPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFRLIG 385
>gi|345806213|ref|XP_858806.2| PREDICTED: retinoic acid receptor RXR-alpha isoform 11 [Canis lupus
familiaris]
Length = 492
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 430 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 473
>gi|301770651|ref|XP_002920751.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Ailuropoda
melanoleuca]
Length = 516
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 454 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 497
>gi|39645799|gb|AAH63827.1| RXRA protein [Homo sapiens]
Length = 516
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 454 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 497
>gi|426363508|ref|XP_004048881.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Gorilla gorilla
gorilla]
Length = 365
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 303 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 346
>gi|149410285|ref|XP_001506054.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Ornithorhynchus
anatinus]
Length = 433
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 371 LEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 414
>gi|18859345|ref|NP_571228.1| retinoic acid receptor RXR-alpha-B [Danio rerio]
gi|52783417|sp|Q90415.1|RXRAB_DANRE RecName: Full=Retinoic acid receptor RXR-alpha-B; AltName:
Full=Nuclear receptor subfamily 2 group B member 1-B;
AltName: Full=Retinoid X receptor alpha-B
gi|1046289|gb|AAC59719.1| retinoid X receptor [Danio rerio]
Length = 379
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 317 LEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 360
>gi|345487763|ref|XP_001606227.2| PREDICTED: photoreceptor-specific nuclear receptor [Nasonia
vitripennis]
Length = 551
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q Q+ L ++ + +P+ P RF ++ L+LP L+++P+ +E ++F IG NT ++K
Sbjct: 486 LQDQAQVMLGQHTRSQHPNNPARFGRLLLLLPLLRNVPATRVELIYFHRTIG-NTPMEKV 544
Query: 105 IWHMYKN 111
+ MYKN
Sbjct: 545 LCDMYKN 551
>gi|71040954|gb|AAZ20368.1| RXRa nuclear hormone receptor [Gecarcinus lateralis]
Length = 436
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 26/44 (59%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L +Y T YP +P RF K+ L LP L+SI LE LF +IG
Sbjct: 368 LEEYTRTTYPDEPGRFAKLLLRLPALRSIGLKCLEYLFLFKLIG 411
>gi|71040960|gb|AAZ20371.1| RXRd nuclear hormone receptor [Gecarcinus lateralis]
Length = 432
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 26/44 (59%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L +Y T YP +P RF K+ L LP L+SI LE LF +IG
Sbjct: 364 LEEYTRTTYPDEPGRFAKLLLRLPALRSIGLKCLEYLFLFKLIG 407
>gi|71040956|gb|AAZ20369.1| RXRb nuclear hormone receptor [Gecarcinus lateralis]
Length = 431
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 26/44 (59%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L +Y T YP +P RF K+ L LP L+SI LE LF +IG
Sbjct: 363 LEEYTRTTYPDEPGRFAKLLLRLPALRSIGLKCLEYLFLFKLIG 406
>gi|68342537|gb|AAC32789.3| retinoid X receptor homolog [Uca pugilator]
Length = 465
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 26/44 (59%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L +Y T YP +P RF K+ L LP L+SI LE LF +IG
Sbjct: 397 LEEYTRTTYPDEPGRFAKLLLRLPALRSIGLKCLEYLFLFKLIG 440
>gi|6755384|ref|NP_035435.1| retinoic acid receptor RXR-alpha [Mus musculus]
gi|133702|sp|P28700.1|RXRA_MOUSE RecName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Nuclear receptor subfamily 2 group B member 1;
AltName: Full=Retinoid X receptor alpha
gi|54022|emb|CAA46962.1| retinoid X receptor-alpha [Mus musculus]
gi|200878|gb|AAA40080.1| retinoid X receptor alpha [Mus musculus]
gi|187953011|gb|AAI38803.1| Retinoid X receptor alpha [Mus musculus]
gi|187954071|gb|AAI38801.1| Retinoid X receptor alpha [Mus musculus]
Length = 467
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 405 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 448
>gi|326930478|ref|XP_003211374.1| PREDICTED: LOW QUALITY PROTEIN: retinoic acid receptor
RXR-alpha-like [Meleagris gallopavo]
Length = 497
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 435 LEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 478
>gi|238859643|ref|NP_001155023.1| retinoic acid receptor RXR-alpha-A [Danio rerio]
Length = 458
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 396 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 439
>gi|50539758|ref|NP_001002345.1| retinoic acid receptor RXR-gamma-B [Danio rerio]
gi|82200328|sp|Q6DHP9.1|RXRGB_DANRE RecName: Full=Retinoic acid receptor RXR-gamma-B; AltName:
Full=Nuclear receptor subfamily 2 group B member 3-B;
AltName: Full=Retinoid X receptor gamma-B
gi|49902731|gb|AAH75918.1| Zgc:92183 [Danio rerio]
gi|124054092|gb|ABM89230.1| retinoid X receptor gamma b [Danio rerio]
Length = 452
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 390 LETYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 433
>gi|1583309|prf||2120366D retinoid X receptor:ISOTYPE=gamma
Length = 391
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 329 LEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 372
>gi|449478039|ref|XP_002196179.2| PREDICTED: retinoic acid receptor RXR-alpha [Taeniopygia guttata]
Length = 439
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 377 LEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 420
>gi|395530718|ref|XP_003767435.1| PREDICTED: retinoic acid receptor RXR-gamma [Sarcophilus harrisii]
Length = 470
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 408 LEAYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 451
>gi|395506404|ref|XP_003757522.1| PREDICTED: retinoic acid receptor RXR-alpha [Sarcophilus harrisii]
Length = 468
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 406 LEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 449
>gi|347360576|emb|CCA61271.1| retinoid X receptor, isoform S [Lithobius peregrinus]
Length = 305
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 26/44 (59%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L +Y YP +P RF K+ L LP L+SI LE LFF +IG
Sbjct: 259 LEEYCKQQYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 302
>gi|1046295|gb|AAC59720.1| retinoid X receptor alpha [Danio rerio]
gi|1583308|prf||2120366C retinoid X receptor:ISOTYPE=alpha
Length = 441
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 8/57 (14%)
Query: 40 KFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
K A+++G+T+ H YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 374 KVYASLEGYTK-------HN-YPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 422
>gi|410222730|gb|JAA08584.1| retinoid X receptor, alpha [Pan troglodytes]
gi|410251064|gb|JAA13499.1| retinoid X receptor, alpha [Pan troglodytes]
gi|410306614|gb|JAA31907.1| retinoid X receptor, alpha [Pan troglodytes]
gi|410353913|gb|JAA43560.1| retinoid X receptor, alpha [Pan troglodytes]
Length = 462
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 400 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 443
>gi|148676425|gb|EDL08372.1| retinoid X receptor alpha [Mus musculus]
Length = 457
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 395 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 438
>gi|148747360|ref|NP_036937.2| retinoic acid receptor RXR-alpha [Rattus norvegicus]
gi|110781215|emb|CAL25727.1| retinoid X receptor alpha [Rattus norvegicus]
gi|110781217|emb|CAL25728.1| retinoid X receptor alpha [Rattus norvegicus]
gi|112982471|emb|CAL36079.1| retinoid X receptor alpha [Rattus norvegicus]
gi|149039209|gb|EDL93429.1| retinoid X receptor alpha, isoform CRA_a [Rattus norvegicus]
Length = 467
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 405 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 448
>gi|41282088|ref|NP_571292.2| retinoic acid receptor RXR-gamma-A [Danio rerio]
gi|52788288|sp|Q90416.2|RXRGA_DANRE RecName: Full=Retinoic acid receptor RXR-gamma-A; AltName:
Full=Nuclear receptor subfamily 2 group B member 3-A;
AltName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Retinoid X receptor alpha; AltName: Full=Retinoid X
receptor gamma-A
gi|37590367|gb|AAH59576.1| Retinoid x receptor, gamma a [Danio rerio]
Length = 441
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 8/57 (14%)
Query: 40 KFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
K A+++G+T+ H YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 374 KVYASLEGYTK-------HN-YPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 422
>gi|74194825|dbj|BAE26004.1| unnamed protein product [Mus musculus]
Length = 467
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 405 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 448
>gi|355752946|gb|EHH56992.1| hypothetical protein EGM_06542, partial [Macaca fascicularis]
Length = 453
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 391 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 434
>gi|355567352|gb|EHH23693.1| hypothetical protein EGK_07223, partial [Macaca mulatta]
Length = 453
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 391 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 434
>gi|464702|sp|Q05343.1|RXRA_RAT RecName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Nuclear receptor subfamily 2 group B member 1;
AltName: Full=Retinoid X receptor alpha
gi|206819|gb|AAA42093.1| retinoid X receptor alpha [Rattus norvegicus]
Length = 467
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 405 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 448
>gi|9931482|gb|AAG02188.1| retinoid-X-receptor [Cloning vector pFB-ERV]
Length = 472
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 410 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 453
>gi|83026436|gb|ABB96254.1| retinoid X receptor, alpha [Homo sapiens]
Length = 452
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 390 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 433
>gi|4506755|ref|NP_002948.1| retinoic acid receptor RXR-alpha [Homo sapiens]
gi|133701|sp|P19793.1|RXRA_HUMAN RecName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Nuclear receptor subfamily 2 group B member 1;
AltName: Full=Retinoid X receptor alpha
gi|35885|emb|CAA36982.1| unnamed protein product [Homo sapiens]
gi|84201602|gb|AAI10999.1| Retinoid X receptor, alpha [Homo sapiens]
gi|119608529|gb|EAW88123.1| retinoid X receptor, alpha, isoform CRA_b [Homo sapiens]
gi|119608530|gb|EAW88124.1| retinoid X receptor, alpha, isoform CRA_b [Homo sapiens]
gi|167773495|gb|ABZ92182.1| retinoid X receptor, alpha [synthetic construct]
gi|208965438|dbj|BAG72733.1| retinoid X receptor, alpha [synthetic construct]
gi|216409718|dbj|BAH02296.1| retinoid X receptor, alpha [Homo sapiens]
gi|325495497|gb|ADZ17354.1| retinoid X nuclear receptor alpha [Homo sapiens]
gi|380815422|gb|AFE79585.1| retinoic acid receptor RXR-alpha [Macaca mulatta]
gi|383420605|gb|AFH33516.1| retinoic acid receptor RXR-alpha [Macaca mulatta]
gi|226861|prf||1609194A retinoic acid receptor RXRalpha
Length = 462
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 400 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 443
>gi|210060988|pdb|3DZU|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Bvt.13, 9-Cis Retinoic Acid And Ncoa2
Peptide
gi|210060994|pdb|3DZY|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Rosiglitazone, 9-Cis Retinoic Acid And
Ncoa2 Peptide
gi|210061000|pdb|3E00|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Gw9662, 9-Cis Retinoic Acid And Ncoa2
Peptide
Length = 467
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 405 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 448
>gi|147732610|sp|A2T929.2|RXRAA_DANRE RecName: Full=Retinoic acid receptor RXR-alpha-A; AltName:
Full=Nuclear receptor subfamily 2 group B member 1-A;
AltName: Full=RXRalpha-B; AltName: Full=Retinoid X
receptor alpha-A
Length = 430
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 368 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 411
>gi|68132036|gb|AAY85284.1| RXRalpha-B [Danio rerio]
Length = 365
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 303 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 346
>gi|4003528|gb|AAC95154.1| retinoic acid receptor RXR [Cloning vector pERV3]
Length = 479
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 417 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 460
>gi|410903442|ref|XP_003965202.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like [Takifugu
rubripes]
Length = 447
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 385 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 428
>gi|449269065|gb|EMC79874.1| Retinoic acid receptor RXR-alpha, partial [Columba livia]
Length = 458
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 396 LEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 439
>gi|427785707|gb|JAA58305.1| Putative retinoid x receptor alpha a [Rhipicephalus pulchellus]
Length = 433
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 34/96 (35%), Positives = 46/96 (47%), Gaps = 14/96 (14%)
Query: 1 MFQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTV 60
M +TEL LR V N E + ++ + +R K AA++ H +
Sbjct: 334 MDRTELGCLRAVVLFNP--EAKGLRSTAQVEALR----EKVYAALEDHCR--------QQ 379
Query: 61 YPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 380 YPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 415
>gi|347360574|emb|CCA61270.1| retinoid X receptor, isoform M [Lithobius peregrinus]
Length = 320
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 26/44 (59%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L +Y YP +P RF K+ L LP L+SI LE LFF +IG
Sbjct: 274 LEEYCKQQYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 317
>gi|262070641|gb|ACY08799.1| ultraspiracle, partial [Tribolium destructor]
Length = 283
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 28/45 (62%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 97
L +Y T +P++P RF K+ L LP L+SI LE LFF +IG
Sbjct: 234 LEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 278
>gi|148725669|emb|CAN87977.1| retinoid x receptor, alpha b [Danio rerio]
Length = 202
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 110
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M +
Sbjct: 140 LEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEMLE 196
>gi|347360572|emb|CCA61269.1| retinoid X receptor, isoform L [Lithobius peregrinus]
Length = 326
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 26/44 (59%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L +Y YP +P RF K+ L LP L+SI LE LFF +IG
Sbjct: 280 LEEYCKQQYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 323
>gi|395741153|ref|XP_002820405.2| PREDICTED: retinoic acid receptor RXR-alpha-like [Pongo abelii]
Length = 318
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 110
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M +
Sbjct: 256 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEMLE 312
>gi|327276463|ref|XP_003222989.1| PREDICTED: retinoic acid receptor RXR-alpha-like, partial [Anolis
carolinensis]
Length = 451
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 389 LEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 432
>gi|325930183|gb|ADZ45550.1| retinoid X receptor alpha [Taeniopygia guttata]
Length = 467
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 405 LEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 448
>gi|158962474|dbj|BAF91724.1| retinoid X receptor [Ornithodoros moubata]
Length = 453
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 34/96 (35%), Positives = 45/96 (46%), Gaps = 14/96 (14%)
Query: 1 MFQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTV 60
M +TEL LR + N E R S + +R + AA++ H +
Sbjct: 354 MDRTELGCLRAIVLFNP--EARGLRCSAQVEALR----ERVYAALEDHCR--------QQ 399
Query: 61 YPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 400 YPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 435
>gi|126297986|ref|XP_001372307.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Monodelphis
domestica]
Length = 489
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 427 LEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 470
>gi|224983542|pdb|3E94|A Chain A, Crystal Structure Of Rxralpha Ligand Binding Domain In
Complex With Tributyltin And A Coactivator Fragment
gi|284055748|pdb|3KWY|A Chain A, Crystal Structure Of Rxralpha Ligand Binding Domain In
Complex With Triphenyltin And A Coactivator Fragment
Length = 244
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 110
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M +
Sbjct: 182 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEMLE 238
>gi|7766906|pdb|1DKF|A Chain A, Crystal Structure Of A Heterodimeric Complex Of Rar And
Rxr Ligand-Binding Domains
Length = 233
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 110
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M +
Sbjct: 176 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEMLE 232
>gi|314955738|gb|ADT64886.1| retinoid X receptor [Gryllus firmus]
Length = 358
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L +Y T +P +P RF K+ L LP L+SI LE LFF +IG
Sbjct: 297 LEEYTRTTHPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFRLIG 340
>gi|56965939|pdb|1RDT|A Chain A, Crystal Structure Of A New Rexinoid Bound To The Rxralpha
Ligand Binding Doamin In The RxralphaPPARGAMMA
HETERODIMER
gi|223365895|pdb|3FC6|A Chain A, Hrxralpha & Mlxralpha With An Indole Pharmacophore,
Sb786875
gi|223365897|pdb|3FC6|C Chain C, Hrxralpha & Mlxralpha With An Indole Pharmacophore,
Sb786875
gi|226887770|pdb|3FAL|A Chain A, Humanrxr Alpha & Mouse Lxr Alpha Complexed With Retenoic
Acid And Gsk2186
gi|226887772|pdb|3FAL|C Chain C, Humanrxr Alpha & Mouse Lxr Alpha Complexed With Retenoic
Acid And Gsk2186
Length = 242
Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 110
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M +
Sbjct: 180 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEMLE 236
>gi|195434755|ref|XP_002065368.1| GK14705 [Drosophila willistoni]
gi|194161453|gb|EDW76354.1| GK14705 [Drosophila willistoni]
Length = 730
Score = 43.1 bits (100), Expect = 0.018, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q Q L+ ++ YP Q TRF ++ L+LP L++I + +E LFF+ IG N I +
Sbjct: 658 LQDQAQCILSDHVRLRYPRQATRFGRLLLLLPSLRTIRASTIEALFFKETIG-NVPIARL 716
Query: 105 IWHMY 109
+ MY
Sbjct: 717 LRDMY 721
>gi|262070635|gb|ACY08796.1| ultraspiracle, partial [Tribolium brevicornis]
Length = 284
Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 28/45 (62%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 97
L +Y T +P++P RF K+ L LP L+SI LE LFF +IG
Sbjct: 235 LEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 279
>gi|13399885|pdb|1FM6|A Chain A, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Rosiglitazone And Co-Activator Peptides.
gi|13399887|pdb|1FM6|U Chain U, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Rosiglitazone And Co-Activator Peptides.
gi|13399893|pdb|1FM9|A Chain A, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Gi262570 And Co-Activator Peptides.
gi|14278179|pdb|1G5Y|A Chain A, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
gi|14278180|pdb|1G5Y|B Chain B, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
gi|14278181|pdb|1G5Y|C Chain C, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
gi|14278182|pdb|1G5Y|D Chain D, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
gi|14278313|pdb|1G1U|A Chain A, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
gi|14278314|pdb|1G1U|B Chain B, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
gi|14278315|pdb|1G1U|C Chain C, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
gi|14278316|pdb|1G1U|D Chain D, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
gi|17943020|pdb|1K74|A Chain A, The 2.3 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Ppargamma And Rxralpha Ligand
Binding Domains Respectively Bound With Gw409544 And
9-Cis Retinoic Acid And Co-Activator Peptides.
gi|78101296|pdb|2ACL|A Chain A, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
gi|78101298|pdb|2ACL|C Chain C, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
gi|78101300|pdb|2ACL|E Chain E, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
gi|78101302|pdb|2ACL|G Chain G, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
gi|321159910|pdb|3OZJ|A Chain A, Crystal Structure Of Human Retinoic X Receptor Alpha
Complexed With Bigelovin And Coactivator Src-1
gi|321159912|pdb|3OZJ|C Chain C, Crystal Structure Of Human Retinoic X Receptor Alpha
Complexed With Bigelovin And Coactivator Src-1
Length = 238
Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 110
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M +
Sbjct: 176 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEMLE 232
>gi|225001484|gb|ACN78602.1| retinoid X receptor 2 [Fenneropenaeus chinensis]
Length = 437
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 26/44 (59%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L +Y T YP QP RF K+ L LP L+SI LE LF ++G
Sbjct: 371 LEEYTRTSYPDQPGRFAKLLLRLPALRSIGLKCLEYLFLFKLLG 414
>gi|225001482|gb|ACN78601.1| retinoid X receptor 1 [Fenneropenaeus chinensis]
Length = 442
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 26/44 (59%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L +Y T YP QP RF K+ L LP L+SI LE LF ++G
Sbjct: 376 LEEYTRTSYPDQPGRFAKLLLRLPALRSIGLKCLEYLFLFKLLG 419
>gi|323461809|dbj|BAJ76723.1| retinoid X receptor isoform 2 [Reishia clavigera]
Length = 447
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 26/45 (57%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 97
L +Y YP +P RF K+ L LP L+SI LE LFF +IG
Sbjct: 384 LEEYCKQRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGQ 428
>gi|323461807|dbj|BAJ76722.1| retinoid X receptor isoform 1 [Reishia clavigera]
Length = 442
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 26/45 (57%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 97
L +Y YP +P RF K+ L LP L+SI LE LFF +IG
Sbjct: 379 LEEYCKQRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGQ 423
>gi|154936862|dbj|BAF75376.1| retinoid X receptor [Marsupenaeus japonicus]
Length = 442
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 26/44 (59%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L +Y T YP QP RF K+ L LP L+SI LE LF ++G
Sbjct: 376 LEEYTRTSYPDQPGRFAKLLLRLPALRSIGLKCLEYLFLFKLLG 419
>gi|51873224|gb|AAU12572.1| retinoid X receptor [Reishia clavigera]
Length = 431
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 26/45 (57%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 97
L +Y YP +P RF K+ L LP L+SI LE LFF +IG
Sbjct: 368 LEEYCKQRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGQ 412
>gi|384482349|pdb|3UVV|B Chain B, Crystal Structure Of The Ligand Binding Domains Of The
Thyroid Receptor:retinoid X Receptor Complexed With
3,3',5 Triiodo-L- Thyronine And 9-Cis Retinoic Acid
Length = 244
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 110
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M +
Sbjct: 180 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEMLE 236
>gi|24987814|pdb|1MV9|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To The Eicosanoid Dha (Docosa Hexaenoic
Acid) And A Coactivator Peptide
gi|24987816|pdb|1MVC|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To The Synthetic Agonist Compound Bms 649
And A Coactivator Peptide
gi|24987862|pdb|1MZN|A Chain A, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
gi|24987864|pdb|1MZN|C Chain C, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
gi|24987866|pdb|1MZN|E Chain E, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
gi|24987868|pdb|1MZN|G Chain G, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
gi|158429278|pdb|2P1T|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Retinoid X Receptor Alpha In Complex With
3-(2'-Methoxy)- Tetrahydronaphtyl Cinnamic Acid And A
Fragment Of The Coactivator Tif-2
gi|158429280|pdb|2P1U|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Retinoid X Receptor Alpha In Complex With 3-(2'-Ethoxy)-
Tetrahydronaphtyl Cinnamic Acid And A Fragment Of The
Coactivator Tif-2
gi|158429282|pdb|2P1V|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Retinoid X Receptor Alpha In Complex With
3-(2'-Propoxy)- Tetrahydronaphtyl Cinnamic Acid And A
Fragment Of The Coactivator Tif-2
gi|237640540|pdb|3FUG|A Chain A, Crystal Structure Of The Retinoid X Receptor Ligand
Binding Domain Bound To The Synthetic Agonist
3-[4-Hydroxy-3-(3,5,
5,8,8-Pentamethyl-5,6,7,8-Tetrahydronaphthalen-2-Yl)-
Phenyl]acrylic Acid
gi|255917832|pdb|2ZXZ|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To A Synthetic Agonist Compound And A
Coactivator Peptide
gi|255917834|pdb|2ZY0|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To A Synthetic Agonist Compound And A
Coactivator Peptide
gi|255917836|pdb|2ZY0|C Chain C, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To A Synthetic Agonist Compound And A
Coactivator Peptide
gi|312207941|pdb|3NSP|A Chain A, Crystal Structure Of Tetrameric Rxralpha-Lbd
gi|312207942|pdb|3NSP|B Chain B, Crystal Structure Of Tetrameric Rxralpha-Lbd
gi|312207943|pdb|3NSQ|A Chain A, Crystal Structure Of Tetrameric Rxralpha-Lbd Complexed
With Antagonist Danthron
gi|312207944|pdb|3NSQ|B Chain B, Crystal Structure Of Tetrameric Rxralpha-Lbd Complexed
With Antagonist Danthron
gi|333944482|pdb|3R29|A Chain A, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2
gi|333944483|pdb|3R29|B Chain B, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2
gi|333944486|pdb|3R2A|A Chain A, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
gi|333944487|pdb|3R2A|B Chain B, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
gi|333944488|pdb|3R2A|C Chain C, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
gi|333944489|pdb|3R2A|D Chain D, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
gi|374977596|pdb|3R5M|A Chain A, Crystal Structure Of Rxralphalbd Complexed With The
Agonist Magnolol
gi|374977598|pdb|3R5M|C Chain C, Crystal Structure Of Rxralphalbd Complexed With The
Agonist Magnolol
Length = 240
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 110
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M +
Sbjct: 178 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEMLE 234
>gi|9955002|pdb|1FBY|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To 9-Cis Retinoic Acid
gi|9955003|pdb|1FBY|B Chain B, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To 9-Cis Retinoic Acid
Length = 239
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 110
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M +
Sbjct: 177 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEMLE 233
>gi|308198436|pdb|3A9E|A Chain A, Crystal Structure Of A Mixed Agonist-Bound Rar-Alpha And
Antagonist- Bound Rxr-Alpha Heterodimer Ligand Binding
Domains
Length = 240
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 110
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M +
Sbjct: 178 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEMLE 234
>gi|56967064|pdb|1XDK|A Chain A, Crystal Structure Of The RarbetaRXRALPHA LIGAND BINDING
Domain Heterodimer In Complex With 9-Cis Retinoic Acid
And A Fragment Of The Trap220 Coactivator
gi|56967068|pdb|1XDK|E Chain E, Crystal Structure Of The RarbetaRXRALPHA LIGAND BINDING
Domain Heterodimer In Complex With 9-Cis Retinoic Acid
And A Fragment Of The Trap220 Coactivator
Length = 238
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 110
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M +
Sbjct: 176 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEMLE 232
>gi|357380532|pdb|3PCU|A Chain A, Crystal Structure Of Human Retinoic X Receptor Alpha
Ligand-Binding Domain Complexed With Lx0278 And Src1
Peptide
Length = 230
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 110
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M +
Sbjct: 172 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEMLE 228
>gi|262070639|gb|ACY08798.1| ultraspiracle, partial [Tribolium madens]
Length = 284
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 28/45 (62%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 97
L +Y T +P++P RF K+ L LP L+SI LE LFF +IG
Sbjct: 235 LEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 279
>gi|262070637|gb|ACY08797.1| ultraspiracle, partial [Tribolium freemani]
Length = 284
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 28/45 (62%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 97
L +Y T +P++P RF K+ L LP L+SI LE LFF +IG
Sbjct: 235 LEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 279
>gi|312208011|pdb|3OAP|A Chain A, Crystal Structure Of Human Retinoid X Receptor
Alpha-Ligand Binding Domain Complex With 9-Cis Retinoic
Acid And The Coactivator Peptide Grip-1
Length = 231
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 110
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M +
Sbjct: 173 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEMLE 229
>gi|61679483|pdb|1XV9|A Chain A, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid, And 5b-Pregnane-3,20-Dione.
gi|61679485|pdb|1XV9|C Chain C, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid, And 5b-Pregnane-3,20-Dione.
gi|61679491|pdb|1XVP|A Chain A, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid And Citco
gi|61679493|pdb|1XVP|C Chain C, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid And Citco
Length = 236
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 110
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M +
Sbjct: 174 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEMLE 230
>gi|58177375|pdb|1XLS|A Chain A, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
gi|58177376|pdb|1XLS|B Chain B, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
gi|58177377|pdb|1XLS|C Chain C, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
gi|58177378|pdb|1XLS|D Chain D, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
Length = 232
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 110
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M +
Sbjct: 174 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEMLE 230
>gi|355717622|gb|AES05998.1| retinoid X receptor, alpha [Mustela putorius furo]
Length = 202
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 110
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M +
Sbjct: 140 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEMLE 196
>gi|154183749|gb|ABS70715.1| retinoid X receptor a isoform [Nucella lapillus]
Length = 441
Score = 43.1 bits (100), Expect = 0.021, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 33 VRFKTGSKFTAAIQGHTQI------FLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVL 86
V F +K A+Q Q+ L +Y YP +P RF K+ L LP L+SI L
Sbjct: 351 VLFNPDAKGLQAVQEVEQLREKVYASLEEYCKQRYPDEPGRFAKLLLRLPALRSIGLKCL 410
Query: 87 EELFFRNIIG 96
E LFF +IG
Sbjct: 411 EHLFFFKLIG 420
>gi|154183751|gb|ABS70716.1| retinoid X receptor b isoform [Nucella lapillus]
Length = 446
Score = 43.1 bits (100), Expect = 0.021, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 33 VRFKTGSKFTAAIQGHTQI------FLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVL 86
V F +K A+Q Q+ L +Y YP +P RF K+ L LP L+SI L
Sbjct: 356 VLFNPDAKGLQAVQEVEQLREKVYASLEEYCKQRYPDEPGRFAKLLLRLPALRSIGLKCL 415
Query: 87 EELFFRNIIG 96
E LFF +IG
Sbjct: 416 EHLFFFKLIG 425
>gi|242000854|ref|XP_002435070.1| retinoid X receptor, putative [Ixodes scapularis]
gi|215498400|gb|EEC07894.1| retinoid X receptor, putative [Ixodes scapularis]
Length = 400
Score = 43.1 bits (100), Expect = 0.021, Method: Composition-based stats.
Identities = 34/96 (35%), Positives = 46/96 (47%), Gaps = 14/96 (14%)
Query: 1 MFQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTV 60
M +TEL LR V N E + ++ + +R K AA++ H +
Sbjct: 301 MDRTELGCLRAVVLFNP--EAKGLRSTAQVEALR----EKVYAALEEHCR--------QQ 346
Query: 61 YPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 347 YPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 382
>gi|4102801|gb|AAD01591.1| retinoid X receptor gamma [Rattus norvegicus]
Length = 107
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 108
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 45 LEPYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 99
>gi|158429174|pdb|2NXX|A Chain A, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
gi|158429176|pdb|2NXX|B Chain B, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
gi|158429178|pdb|2NXX|C Chain C, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
gi|158429180|pdb|2NXX|D Chain D, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
Length = 235
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 28/45 (62%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 97
L +Y T +P++P RF K+ L LP L+SI LE LFF +IG
Sbjct: 174 LEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 218
>gi|239782043|pdb|3H0A|A Chain A, Crystal Structure Of Peroxisome Proliferator-Activated
Receptor Gamma (Pparg) And Retinoic Acid Receptor Alpha
(Rxra) In Complex With 9-Cis Retinoic Acid, Co-Activator
Peptide, And A Partial Agonist
Length = 228
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 108
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 173 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 227
>gi|357435371|gb|AET79962.1| SHP, partial [Gadus morhua]
Length = 186
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 41 FTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 97
F +Q Q L + ++P P RF +I L L++IP +L ELFFR +IG
Sbjct: 116 FIEGLQQEAQKALEEVGQPLHPDDPGRFARILLSASMLQTIPPTLLTELFFRPLIGQ 172
>gi|327176811|gb|AEA29832.1| retinoid X receptor splice variant [Homarus americanus]
Length = 410
Score = 42.7 bits (99), Expect = 0.024, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 26/44 (59%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L +Y T YP +P RF K+ L LP L+SI LE LF +IG
Sbjct: 344 LEEYTRTSYPEEPGRFAKLLLRLPALRSIGLKCLEYLFLFKLIG 387
>gi|83638436|gb|ABC33911.1| retinoid X receptor alpha transcript variant 1 [Sus scrofa]
Length = 374
Score = 42.7 bits (99), Expect = 0.024, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 312 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKRLEHLFFFKLIG 355
>gi|28628006|gb|AAO18151.1| USP-RXR [Lithobius forficatus]
Length = 305
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 26/44 (59%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L +Y YP +P RF K+ L LP L+SI LE LFF +IG
Sbjct: 260 LEEYCKQHYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 303
>gi|405953743|gb|EKC21345.1| Retinoic acid receptor RXR-alpha [Crassostrea gigas]
Length = 446
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 26/44 (59%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L +Y YP +P RF K+ L LP L+SI LE LFF +IG
Sbjct: 383 LEEYCKMHYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 426
>gi|340025441|gb|AEK27051.1| retinoid X receptor gamma [Lateolabrax japonicus]
Length = 453
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ LP L+SI LE LFF +IG
Sbjct: 391 LESYTKQKYPDQPGRFAKLVFRLPALRSIGLKCLEHLFFFKLIG 434
>gi|290760683|gb|ADD59926.1| retinoid X receptor alpha, partial [Orcinus orca]
Length = 130
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 79 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 122
>gi|449274063|gb|EMC83368.1| Nuclear receptor subfamily 2 group C member 2 [Columba livia]
Length = 596
Score = 42.7 bits (99), Expect = 0.027, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 37 TGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
T S Q Q+ L Y+ YP R +I + LP L+ + S + EELFF +IG
Sbjct: 509 TSSTQIEKFQEKAQMELQDYVQKTYPEDTYRLARILVRLPALRLMSSSITEELFFTGLIG 568
Query: 97 HNTTIKKTIWHMYK 110
N I I ++ K
Sbjct: 569 -NVPIDSIIPYILK 581
>gi|449082861|dbj|BAM83567.1| ultraspiracle long isoform [Periplaneta americana]
Length = 441
Score = 42.7 bits (99), Expect = 0.028, Method: Composition-based stats.
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 13/97 (13%)
Query: 1 MFQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTV 60
M +TEL LR V N ++ +R + + +R K AA L +Y T
Sbjct: 338 MDKTELVCLRSVILFNPDV-VRGLKSRQEVELLR----EKVYAA--------LEEYTRTT 384
Query: 61 YPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 97
+P +P RF K+ LP L+SI LE LFF ++IG+
Sbjct: 385 HPDEPGRFAKLLPSLPSLRSISLKCLEYLFFFSLIGN 421
>gi|105872963|gb|ABF74729.1| retinoid X receptor-like protein [Daphnia magna]
gi|131665089|dbj|BAF49028.1| ultraspiracle [Daphnia magna]
gi|321453064|gb|EFX64341.1| hypothetical protein DAPPUDRAFT_219609 [Daphnia pulex]
Length = 400
Score = 42.7 bits (99), Expect = 0.028, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 108
L +Y T Y +P RF K+ L LP L+SI LE LFF +IG +T I+ + M
Sbjct: 339 LEEYTRTNYADEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIESFLLEM 393
>gi|297269916|ref|XP_001118265.2| PREDICTED: retinoic acid receptor RXR-alpha, partial [Macaca
mulatta]
Length = 277
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 108
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 215 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 269
>gi|226316413|gb|ACO44670.1| retinoid X receptor isoform 3 [Crangon crangon]
Length = 399
Score = 42.7 bits (99), Expect = 0.030, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 26/44 (59%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L +Y T YP +P RF K+ L LP L+SI LE LF +IG
Sbjct: 333 LEEYTRTSYPHEPGRFAKLLLRLPALRSIGLKCLEYLFLFKLIG 376
>gi|226316411|gb|ACO44669.1| retinoid X receptor isoform 2 [Crangon crangon]
Length = 400
Score = 42.7 bits (99), Expect = 0.030, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 26/44 (59%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L +Y T YP +P RF K+ L LP L+SI LE LF +IG
Sbjct: 334 LEEYTRTSYPHEPGRFAKLLLRLPALRSIGLKCLEYLFLFKLIG 377
>gi|226316409|gb|ACO44668.1| retinoid X receptor isoform 1 [Crangon crangon]
Length = 405
Score = 42.7 bits (99), Expect = 0.030, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 26/44 (59%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L +Y T YP +P RF K+ L LP L+SI LE LF +IG
Sbjct: 339 LEEYTRTSYPHEPGRFAKLLLRLPALRSIGLKCLEYLFLFKLIG 382
>gi|449082859|dbj|BAM83566.1| ultraspiracle, partial [Periplaneta americana]
Length = 414
Score = 42.4 bits (98), Expect = 0.031, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 97
L +Y T +P +P RF K+ LP L+SI LE LFF ++IG+
Sbjct: 362 LEEYTRTTHPDEPGRFAKLLPSLPSLRSISLKCLEYLFFFSLIGN 406
>gi|410130138|dbj|BAM63276.2| retinoid X receptor [Periplaneta americana]
Length = 416
Score = 42.4 bits (98), Expect = 0.031, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 97
L +Y T +P +P RF K+ LP L+SI LE LFF ++IG+
Sbjct: 352 LEEYTRTTHPDEPGRFAKLLPSLPSLRSISLKCLEYLFFFSLIGN 396
>gi|354801981|gb|AER39752.1| retinoid X receptor [Sepia officinalis]
Length = 292
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKN 111
L +Y YP + RF K+ L LP L+SI LE LFF +IG +T I + M +N
Sbjct: 230 LEEYCKCQYPEETGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEMLEN 287
>gi|190336859|gb|AAI62302.1| Retinoid x receptor, beta b [Danio rerio]
gi|190337908|gb|AAI62301.1| Retinoid x receptor, beta b [Danio rerio]
Length = 422
Score = 42.4 bits (98), Expect = 0.035, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKN 111
L Y YP Q RF K+ L LP L+SI LE LFF +IG NT I + M ++
Sbjct: 363 LESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-NTPIDTFLMEMLES 420
>gi|18859343|ref|NP_571313.1| retinoic acid receptor RXR-beta-B [Danio rerio]
gi|52783418|sp|Q90417.1|RXRBB_DANRE RecName: Full=Retinoic acid receptor RXR-beta-B; AltName:
Full=Nuclear receptor subfamily 2 group B member 2-B;
AltName: Full=Retinoic acid receptor RXR-delta; AltName:
Full=Retinoid X receptor beta-B; AltName: Full=Retinoid
X receptor delta
gi|1046297|gb|AAC59721.1| retinoid X receptor delta [Danio rerio]
gi|1583306|prf||2120366A retinoid X receptor:ISOTYPE=delta
Length = 422
Score = 42.4 bits (98), Expect = 0.035, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKN 111
L Y YP Q RF K+ L LP L+SI LE LFF +IG NT I + M ++
Sbjct: 363 LESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-NTPIDTFLMEMLES 420
>gi|405966252|gb|EKC31559.1| Nuclear receptor subfamily 2 group C member 2 [Crassostrea gigas]
Length = 622
Score = 42.4 bits (98), Expect = 0.035, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
A+Q QI L Y+ TRF ++ L LP L+++ S +E++FFR IG N I++
Sbjct: 556 ALQDQAQIMLYDYVSN-QKLLKTRFGRLLLQLPALRNVSSRAVEDIFFRRTIG-NIPIER 613
Query: 104 TIWHMYKNA 112
+ M+K++
Sbjct: 614 ILCDMFKSS 622
>gi|224066723|ref|XP_002189996.1| PREDICTED: nuclear receptor subfamily 2 group C member 2
[Taeniopygia guttata]
Length = 629
Score = 42.4 bits (98), Expect = 0.035, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 37 TGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
T S Q Q+ L Y+ YP R +I + LP L+ + S + EELFF +IG
Sbjct: 542 TSSTQIEKFQEKAQMELQDYVQKTYPEDTYRLARILVRLPALRLMSSSITEELFFTGLIG 601
Query: 97 HNTTIKKTIWHMYK 110
N I I ++ K
Sbjct: 602 -NVPIDSIIPYILK 614
>gi|6983809|emb|CAB75361.1| USP protein [Tenebrio molitor]
Length = 408
Score = 42.4 bits (98), Expect = 0.036, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 27/44 (61%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L +Y T +P++P RF K+ L LP L+SI E LFF +IG
Sbjct: 347 LEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCSEHLFFFKLIG 390
>gi|148565467|gb|ABQ88373.1| Dax1 [Trachemys scripta]
Length = 98
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 40 KFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
++ +Q Q LN+++ ++ RF K+ ++L L+SI + V+ ELFFR IIG
Sbjct: 31 QYIQGLQREAQQALNEHVTLIHQGDQARFAKLNVVLSLLRSINANVIAELFFRPIIG 87
>gi|184161287|gb|ACC68675.1| nuclear receptor subfamily 0 group B member 1 [Chrysemys picta]
Length = 89
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%)
Query: 40 KFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
++ +Q Q LN++I ++ RF K+ ++L L+SI + V+ ELFFR IIG
Sbjct: 22 QYIQGLQREAQQALNEHITLIHRGDQARFAKLNVVLSLLRSINANVIAELFFRPIIG 78
>gi|196015032|ref|XP_002117374.1| hypothetical protein TRIADDRAFT_16711 [Trichoplax adhaerens]
gi|190580127|gb|EDV20213.1| hypothetical protein TRIADDRAFT_16711 [Trichoplax adhaerens]
Length = 222
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%)
Query: 31 SRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELF 90
S R T ++QG + L +Y YP QP RF ++ + LP LK+I S +E+LF
Sbjct: 143 SDSRNLTDVSRVESVQGTLYLALQRYTLLNYPEQPLRFAQLLMTLPELKAISSRGIEKLF 202
Query: 91 FRNIIGH 97
+ G
Sbjct: 203 SIKVAGE 209
>gi|46048923|ref|NP_989924.1| nuclear receptor subfamily 0 group B member 1 [Gallus gallus]
gi|6625782|gb|AAF19395.1|AF202991_1 adrenal hyoplasia protein DAX1 [Gallus gallus]
Length = 263
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 35/58 (60%)
Query: 39 SKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
+++ +Q Q LN+++ ++ RF K+ ++L L+SI + V+ ELFFR IIG
Sbjct: 190 TQYIEGLQKEAQEALNEHVRLIHRGDQARFAKLNVVLSLLRSINANVIAELFFRPIIG 247
>gi|327265992|ref|XP_003217791.1| PREDICTED: nuclear receptor subfamily 2 group C member 2-like
[Anolis carolinensis]
Length = 629
Score = 42.4 bits (98), Expect = 0.037, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 37 TGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
T S Q Q+ L Y+ YP R +I + LP L+ + S + EELFF +IG
Sbjct: 542 TNSNQIEKFQEKAQMELQDYVQKTYPEDTYRLARILVRLPALRLMSSSITEELFFTGLIG 601
Query: 97 HNTTIKKTIWHMYK 110
N I I ++ K
Sbjct: 602 -NVPIDSIIPYILK 614
>gi|3098336|gb|AAC15589.1| retinoid X receptor [Amblyomma americanum]
Length = 414
Score = 42.4 bits (98), Expect = 0.039, Method: Composition-based stats.
Identities = 39/109 (35%), Positives = 54/109 (49%), Gaps = 17/109 (15%)
Query: 1 MFQTELTMLRIVTEENSNLE-IRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHT 59
M +TEL LR V N + + +RNA +RV K AA++ H +
Sbjct: 315 MDKTELGCLRAVVLFNPDAKGLRNA------TRVE-ALREKVYAALEEHCRRH------- 360
Query: 60 VYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 108
+P QP RF K+ L LP L+SI LE LFF +IG +T I + +M
Sbjct: 361 -HPDQPGRFGKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDSFLLNM 407
>gi|348583723|ref|XP_003477622.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Cavia
porcellus]
Length = 603
Score = 42.0 bits (97), Expect = 0.042, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
A+Q +Q+ L+++ +PSQP RF K+ L+LP L+ + S +E +FF IG NT ++K
Sbjct: 537 ALQDQSQMMLSQHTKAHHPSQPMRFGKLLLLLPSLRFLTSERIEHVFFCKTIG-NTPMEK 595
Query: 104 TIWHMYKN 111
+ M+KN
Sbjct: 596 LLCDMFKN 603
>gi|326928210|ref|XP_003210274.1| PREDICTED: nuclear receptor subfamily 2 group C member 2-like
[Meleagris gallopavo]
Length = 592
Score = 42.0 bits (97), Expect = 0.042, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 46 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTI 105
Q Q+ L Y+ YP R +I + LP L+ + S + EELFF +IG N I I
Sbjct: 514 QEKAQMELQDYVQKTYPEDTYRLARILVRLPALRLMSSSITEELFFTGLIG-NVPIDSII 572
Query: 106 WHMYK 110
++ K
Sbjct: 573 PYILK 577
>gi|71040958|gb|AAZ20370.1| RXRc nuclear hormone receptor [Gecarcinus lateralis]
Length = 363
Score = 42.0 bits (97), Expect = 0.043, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L +Y T YP +P RF K+ L LP L SI LE LF +IG
Sbjct: 295 LEEYTRTTYPDEPGRFAKLLLRLPALMSIGLKCLEYLFLFKLIG 338
>gi|158298421|ref|XP_318587.4| AGAP009575-PA [Anopheles gambiae str. PEST]
gi|157013872|gb|EAA14563.5| AGAP009575-PA [Anopheles gambiae str. PEST]
Length = 761
Score = 42.0 bits (97), Expect = 0.044, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q Q L++++ YP QPTRF ++ L+LP L++I S +E LFF+ IG I +
Sbjct: 667 LQDQAQCVLSEHVRVRYPRQPTRFGRLLLLLPLLRTIRSTTIETLFFKETIG-TVPISRL 725
Query: 105 IWHMYK 110
+ MY+
Sbjct: 726 LIDMYQ 731
>gi|307199534|gb|EFN80135.1| Photoreceptor-specific nuclear receptor [Harpegnathos saltator]
Length = 538
Score = 42.0 bits (97), Expect = 0.044, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q Q+ L ++ P+ P RF ++ L+LP L+++P+ +E ++F IG NT ++K
Sbjct: 473 LQDQAQVMLGQHARAQQPASPARFGRLLLLLPLLRAVPAARVELIYFHRTIG-NTPMEKV 531
Query: 105 IWHMYKN 111
+ MYKN
Sbjct: 532 LCDMYKN 538
>gi|156357575|ref|XP_001624292.1| predicted protein [Nematostella vectensis]
gi|156211059|gb|EDO32192.1| predicted protein [Nematostella vectensis]
Length = 347
Score = 42.0 bits (97), Expect = 0.045, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG--HNTTIK 102
+Q L ++I+ +P +P RF I L LP L+SI + LE LF N+ G H +T
Sbjct: 279 LQDKVHSALQEHINLAFPREPNRFGNILLRLPELRSIGTKSLERLFMLNLTGQIHPSTSL 338
Query: 103 KTIWHMYK 110
+ H K
Sbjct: 339 SDLLHTGK 346
>gi|118343980|ref|NP_001071809.1| nuclear receptor [Ciona intestinalis]
gi|70571095|dbj|BAE06678.1| nuclear receptor [Ciona intestinalis]
Length = 507
Score = 42.0 bits (97), Expect = 0.048, Method: Composition-based stats.
Identities = 24/51 (47%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
L Y + YP Q RF K+ L LP L+SI LE LFF +IG NT I +
Sbjct: 423 LEVYCKSKYPDQAGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-NTPIDQ 472
>gi|363738759|ref|XP_414462.3| PREDICTED: nuclear receptor subfamily 2 group C member 2 [Gallus
gallus]
Length = 629
Score = 42.0 bits (97), Expect = 0.049, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 46 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTI 105
Q Q+ L Y+ YP R +I + LP L+ + S + EELFF +IG N I I
Sbjct: 551 QEKAQMELQDYVQKTYPEDTYRLARILVRLPALRLMSSSITEELFFTGLIG-NVPIDSII 609
Query: 106 WHMYK 110
++ K
Sbjct: 610 PYILK 614
>gi|84028531|gb|ABC49724.1| retinoid X receptor 1 [Petromyzon marinus]
Length = 476
Score = 42.0 bits (97), Expect = 0.049, Method: Composition-based stats.
Identities = 21/43 (48%), Positives = 24/43 (55%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNII 95
L Y YP QP RF K+ L LP L+SI LE LFF +I
Sbjct: 416 LESYCKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLI 458
>gi|84028535|gb|ABC49726.1| retinoid X receptor 3 [Petromyzon marinus]
Length = 462
Score = 42.0 bits (97), Expect = 0.049, Method: Composition-based stats.
Identities = 21/43 (48%), Positives = 24/43 (55%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNII 95
L Y YP QP RF K+ L LP L+SI LE LFF +I
Sbjct: 402 LESYCKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLI 444
>gi|383848789|ref|XP_003700030.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like [Megachile
rotundata]
Length = 427
Score = 42.0 bits (97), Expect = 0.052, Method: Composition-based stats.
Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 14/96 (14%)
Query: 1 MFQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTV 60
M +TEL LR + N E+R + + + +R K AA++G Y
Sbjct: 328 MDRTELGCLRSIILFNP--EVRGLKSIQEVTLLR----EKIYAALEG--------YCRVA 373
Query: 61 YPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
+P P RF K+ L LP ++SI LE LFF +IG
Sbjct: 374 WPDDPGRFAKLLLRLPAIRSIGLKCLEHLFFFKMIG 409
>gi|60360544|dbj|BAD90516.1| mKIAA4145 protein [Mus musculus]
Length = 363
Score = 42.0 bits (97), Expect = 0.052, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 37 TGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
TG+ Q Q+ L Y+ Y R +I + LP L+ + S + EELFF +IG
Sbjct: 276 TGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIG 335
Query: 97 HNTTIKKTIWHMYK 110
N +I I ++ K
Sbjct: 336 -NVSIDSIIPYILK 348
>gi|348554859|ref|XP_003463242.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 [Cavia
porcellus]
Length = 596
Score = 41.6 bits (96), Expect = 0.053, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 37 TGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
TG+ Q Q+ L Y+ Y R +I + LP L+ + S + EELFF +IG
Sbjct: 509 TGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIG 568
Query: 97 HNTTIKKTIWHMYK 110
N +I I ++ K
Sbjct: 569 -NVSIDSIIPYILK 581
>gi|355703292|gb|EHH29783.1| hypothetical protein EGK_10292, partial [Macaca mulatta]
Length = 227
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 149 SLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIET 207
Query: 104 TIWHM 108
I M
Sbjct: 208 LIRDM 212
>gi|443685606|gb|ELT89160.1| hypothetical protein CAPTEDRAFT_171549 [Capitella teleta]
Length = 428
Score = 41.6 bits (96), Expect = 0.056, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 37 TGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
+ S ++Q Q L +Y + YP+QPTRF K+ L LP L+S+ + V+E+LFF ++G
Sbjct: 343 SDSAHIESLQEKAQCALEEYDRSQYPNQPTRFGKLLLRLPSLRSVSAQVIEQLFFVRLVG 402
Query: 97 HNTTIKKTIWHMYKNAG 113
T I+ I M + G
Sbjct: 403 -KTPIETLIRDMLLSGG 418
>gi|67906168|ref|NP_035760.1| nuclear receptor subfamily 2 group C member 2 [Mus musculus]
gi|1351191|sp|P49117.1|NR2C2_MOUSE RecName: Full=Nuclear receptor subfamily 2 group C member 2;
AltName: Full=Orphan nuclear receptor TAK1; AltName:
Full=Orphan nuclear receptor TR4; AltName:
Full=Testicular receptor 4
gi|885593|gb|AAA93150.1| orphan receptor TAK1 [Mus musculus]
gi|73909027|gb|AAI03684.1| Nr2c2 protein [Mus musculus]
gi|73909185|gb|AAI03685.1| Nr2c2 protein [Mus musculus]
gi|74210203|dbj|BAE23331.1| unnamed protein product [Mus musculus]
Length = 596
Score = 41.6 bits (96), Expect = 0.056, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 37 TGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
TG+ Q Q+ L Y+ Y R +I + LP L+ + S + EELFF +IG
Sbjct: 509 TGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIG 568
Query: 97 HNTTIKKTIWHMYK 110
N +I I ++ K
Sbjct: 569 -NVSIDSIIPYILK 581
>gi|348500378|ref|XP_003437750.1| PREDICTED: COUP transcription factor 2-like [Oreochromis niloticus]
Length = 410
Score = 41.6 bits (96), Expect = 0.056, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
+Q +Q L +Y+ + YP+QP RF K+ L LP L+S+ S V+E+LFF ++G T I+
Sbjct: 332 GLQEKSQCALEEYVRSQYPNQPNRFGKLLLRLPSLRSVSSSVIEQLFFVRLVG-KTPIET 390
Query: 104 TIWHM 108
I M
Sbjct: 391 LIRDM 395
>gi|170031169|ref|XP_001843459.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167869235|gb|EDS32618.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 697
Score = 41.6 bits (96), Expect = 0.059, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q Q L+ ++ YP QPTRF ++ L+LP L++I S +E LFF+ IG I +
Sbjct: 605 LQDQAQCVLSDHVRVRYPRQPTRFGRLLLLLPLLRTIRSTTIETLFFKETIG-TVPISRL 663
Query: 105 IWHMYK 110
+ MY+
Sbjct: 664 LIDMYQ 669
>gi|149036770|gb|EDL91388.1| rCG56527, isoform CRA_c [Rattus norvegicus]
Length = 596
Score = 41.6 bits (96), Expect = 0.060, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 37 TGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
TG+ Q Q+ L Y+ Y R +I + LP L+ + S + EELFF +IG
Sbjct: 509 TGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIG 568
Query: 97 HNTTIKKTIWHMYK 110
N +I I ++ K
Sbjct: 569 -NVSIDSIIPYILK 581
>gi|912822|gb|AAB33314.1| type II zinc finger DNA binding transcription factor [Mus sp.]
gi|148666900|gb|EDK99316.1| nuclear receptor subfamily 2, group C, member 2, isoform CRA_a [Mus
musculus]
Length = 629
Score = 41.6 bits (96), Expect = 0.061, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 37 TGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
TG+ Q Q+ L Y+ Y R +I + LP L+ + S + EELFF +IG
Sbjct: 542 TGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIG 601
Query: 97 HNTTIKKTIWHMYK 110
N +I I ++ K
Sbjct: 602 -NVSIDSIIPYILK 614
>gi|357622948|gb|EHJ74290.1| putative Orphan nuclear receptor NR6A1 [Danaus plexippus]
Length = 307
Score = 41.6 bits (96), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q Q L Y+ T Y QPTRF ++ L+LP L+++ + +E L FR +G + ++
Sbjct: 224 LQDQAQCILADYVRTRYTRQPTRFGRLLLLLPSLRAVRARSIESLLFRETVG-DVSVATL 282
Query: 105 IWHMYK 110
+ MY+
Sbjct: 283 LHDMYR 288
>gi|351695773|gb|EHA98691.1| Nuclear receptor subfamily 2 group C member 2 [Heterocephalus
glaber]
Length = 616
Score = 41.6 bits (96), Expect = 0.062, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 37 TGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
TG+ Q Q+ L Y+ Y R +I + LP L+ + S + EELFF +IG
Sbjct: 529 TGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIG 588
Query: 97 HNTTIKKTIWHMYK 110
N +I I ++ K
Sbjct: 589 -NVSIDSIIPYILK 601
>gi|354465507|ref|XP_003495221.1| PREDICTED: nuclear receptor subfamily 2 group C member 2
[Cricetulus griseus]
gi|344241619|gb|EGV97722.1| Nuclear receptor subfamily 2 group C member 2 [Cricetulus griseus]
Length = 596
Score = 41.6 bits (96), Expect = 0.062, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 37 TGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
TG+ Q Q+ L Y+ Y R +I + LP L+ + S + EELFF +IG
Sbjct: 509 TGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIG 568
Query: 97 HNTTIKKTIWHMYK 110
N +I I ++ K
Sbjct: 569 -NVSIDSIIPYILK 581
>gi|312385998|gb|EFR30376.1| hypothetical protein AND_00091 [Anopheles darlingi]
Length = 787
Score = 41.6 bits (96), Expect = 0.062, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q Q L +++ YP QPTRF ++ L+LP L++I S +E LFF+ IG I +
Sbjct: 690 LQDQAQCVLAEHVRVRYPRQPTRFGRLLLLLPLLRTIRSTTIETLFFKETIG-TVPISRL 748
Query: 105 IWHMYK 110
+ MY+
Sbjct: 749 LIDMYQ 754
>gi|32169341|emb|CAD99183.1| retinoid X receptor [Dicentrarchus labrax]
Length = 274
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 108
L Y YP QP RF K+ L LP L+SI E LFF +IG +T I + M
Sbjct: 219 LEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCQEHLFFFKLIG-DTPIDTFLMEM 273
>gi|8394483|ref|NP_059019.1| nuclear receptor subfamily 2 group C member 2 [Rattus norvegicus]
gi|1730013|sp|P55094.1|NR2C2_RAT RecName: Full=Nuclear receptor subfamily 2 group C member 2;
AltName: Full=Orphan nuclear receptor TR4; AltName:
Full=Testicular receptor 4
gi|538260|gb|AAA21475.1| TR4 orphan receptor [Rattus norvegicus]
Length = 596
Score = 41.6 bits (96), Expect = 0.062, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 37 TGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
TG+ Q Q+ L Y+ Y R +I + LP L+ + S + EELFF +IG
Sbjct: 509 TGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIG 568
Query: 97 HNTTIKKTIWHMYK 110
N +I I ++ K
Sbjct: 569 -NVSIDSIIPYILK 581
>gi|84579197|dbj|BAE73032.1| hypothetical protein [Macaca fascicularis]
Length = 462
Score = 41.6 bits (96), Expect = 0.064, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF + G
Sbjct: 400 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLTG 443
>gi|380799419|gb|AFE71585.1| nuclear receptor subfamily 2 group F member 6, partial [Macaca
mulatta]
Length = 144
Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 66 SLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIET 124
Query: 104 TIWHM 108
I M
Sbjct: 125 LIRDM 129
>gi|348557963|ref|XP_003464788.1| PREDICTED: nuclear receptor subfamily 0 group B member 1-like
[Cavia porcellus]
Length = 475
Score = 41.6 bits (96), Expect = 0.065, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 40 KFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
K+ +Q TQ LN++I + TRF ++ L L+ I S V+ ELFFR IIG
Sbjct: 403 KYIQGLQWGTQQILNEHIRMTHREYQTRFAELNSALFLLRFINSNVIAELFFRPIIG 459
>gi|149036768|gb|EDL91386.1| rCG56527, isoform CRA_a [Rattus norvegicus]
Length = 629
Score = 41.6 bits (96), Expect = 0.066, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 37 TGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
TG+ Q Q+ L Y+ Y R +I + LP L+ + S + EELFF +IG
Sbjct: 542 TGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIG 601
Query: 97 HNTTIKKTIWHMYK 110
N +I I ++ K
Sbjct: 602 -NVSIDSIIPYILK 614
>gi|432095516|gb|ELK26668.1| Usher syndrome type-1C protein-binding protein 1 [Myotis davidii]
Length = 768
Score = 41.6 bits (96), Expect = 0.067, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 690 SLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIET 748
Query: 104 TIWHM 108
I M
Sbjct: 749 LIRDM 753
>gi|327283177|ref|XP_003226318.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 2-like
[Anolis carolinensis]
Length = 359
Score = 41.6 bits (96), Expect = 0.067, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+ F ++G T I+
Sbjct: 281 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIAVSXFVRLVG-KTPIET 339
Query: 104 TIWHM 108
I M
Sbjct: 340 LIRDM 344
>gi|402904691|ref|XP_003915174.1| PREDICTED: Usher syndrome type-1C protein-binding protein 1 [Papio
anubis]
Length = 952
Score = 41.6 bits (96), Expect = 0.067, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 874 SLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIET 932
Query: 104 TIWHM 108
I M
Sbjct: 933 LIRDM 937
>gi|149036142|gb|EDL90808.1| nuclear receptor subfamily 2, group F, member 6, isoform CRA_b
[Rattus norvegicus]
Length = 134
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 57 SLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIET 115
Query: 104 TIWHM 108
I M
Sbjct: 116 LIRDM 120
>gi|383861940|ref|XP_003706442.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Megachile
rotundata]
Length = 537
Score = 41.2 bits (95), Expect = 0.069, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q Q+ L ++ P+ P RF ++ L+LP L+++P+ +E ++F IG NT ++K
Sbjct: 472 LQDQAQVMLGQHARAQQPASPARFGRLLLLLPLLRTVPASRVELIYFHRTIG-NTPMEKV 530
Query: 105 IWHMYKN 111
+ MYKN
Sbjct: 531 LCDMYKN 537
>gi|194223734|ref|XP_001499769.2| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Equus caballus]
Length = 185
Score = 41.2 bits (95), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 107 SLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIET 165
Query: 104 TIWHM 108
I M
Sbjct: 166 LIRDM 170
>gi|126324155|ref|XP_001369925.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Monodelphis domestica]
Length = 732
Score = 41.2 bits (95), Expect = 0.073, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 654 SLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPAALISQLFFMRLVG-KTPIET 712
Query: 104 TIWHM 108
I M
Sbjct: 713 LIRDM 717
>gi|224042660|ref|XP_002191977.1| PREDICTED: nuclear receptor subfamily 0 group B member 1
[Taeniopygia guttata]
Length = 265
Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 35/58 (60%)
Query: 39 SKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
+++ +Q Q LN+++ ++ RF K+ ++L L+SI + V+ ELFFR IIG
Sbjct: 192 TQYIEGLQREAQQALNEHVRLIHRGDEARFAKLNVVLSLLRSINANVVAELFFRPIIG 249
>gi|395750689|ref|XP_002828930.2| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Pongo
abelii]
Length = 215
Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 137 SLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIET 195
Query: 104 TIWHM 108
I M
Sbjct: 196 LIRDM 200
>gi|57965690|ref|XP_561285.1| Anopheles gambiae str. PEST AGAP012921-PA [Anopheles gambiae str.
PEST]
gi|55247184|gb|EAL42340.1| AGAP012921-PA [Anopheles gambiae str. PEST]
Length = 96
Score = 41.2 bits (95), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q Q L++++ YP QPTRF ++ L+LP L++I S +E LFF+ IG I +
Sbjct: 2 LQDQAQCVLSEHVRVRYPRQPTRFGRLLLLLPLLRTIRSTTIETLFFKETIG-TVPISRL 60
Query: 105 IWHMYK 110
+ MY+
Sbjct: 61 LIDMYQ 66
>gi|363745928|ref|XP_003643465.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-B-like
[Gallus gallus]
Length = 300
Score = 41.2 bits (95), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
+Q Q+ L +Y+ + YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 222 GLQEKAQVALTEYVRSQYPSQPQRFGRLLLRLPALRAVPAALISQLFFMRLVG-KTPIET 280
Query: 104 TIWHM 108
I M
Sbjct: 281 LIRDM 285
>gi|301617695|ref|XP_002938282.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 [Xenopus
(Silurana) tropicalis]
Length = 509
Score = 41.2 bits (95), Expect = 0.080, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 46 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTI 105
Q Q+ L Y+ YP R +I + LP L+ + S + EELFF +IG N I I
Sbjct: 431 QEKAQMELQDYVQKTYPDDTYRLARILVRLPALRLMSSNITEELFFTGLIG-NVPIDSII 489
Query: 106 WHMYK 110
++ K
Sbjct: 490 PYILK 494
>gi|296486096|tpg|DAA28209.1| TPA: nuclear receptor subfamily 2, group F, member 6-like [Bos
taurus]
Length = 383
Score = 41.2 bits (95), Expect = 0.080, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 305 SLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIET 363
Query: 104 TIWHM 108
I M
Sbjct: 364 LIRDM 368
>gi|194384988|dbj|BAG60906.1| unnamed protein product [Homo sapiens]
Length = 377
Score = 41.2 bits (95), Expect = 0.081, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 299 SLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIET 357
Query: 104 TIWHM 108
I M
Sbjct: 358 LIRDM 362
>gi|302563813|ref|NP_001181753.1| nuclear receptor subfamily 2 group F member 6 [Macaca mulatta]
Length = 377
Score = 41.2 bits (95), Expect = 0.083, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 299 SLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIET 357
Query: 104 TIWHM 108
I M
Sbjct: 358 LIRDM 362
>gi|283488474|gb|ADB24760.1| retinoid x receptor [Agelena silvatica]
Length = 406
Score = 41.2 bits (95), Expect = 0.083, Method: Composition-based stats.
Identities = 24/49 (48%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTI 101
L +Y +YP Q RF K+ L LP L+SI LE LFF +IG NT I
Sbjct: 345 LEEYCKQMYPQQNGRFPKLLLRLPALRSIGLKCLEHLFFFKLIG-NTPI 392
>gi|73986038|ref|XP_852412.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 isoform 1
[Canis lupus familiaris]
Length = 416
Score = 41.2 bits (95), Expect = 0.085, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 338 SLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIET 396
Query: 104 TIWHM 108
I M
Sbjct: 397 LIRDM 401
>gi|296233223|ref|XP_002761927.1| PREDICTED: nuclear receptor subfamily 2 group F member 6
[Callithrix jacchus]
Length = 386
Score = 41.2 bits (95), Expect = 0.085, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 308 SLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIET 366
Query: 104 TIWHM 108
I M
Sbjct: 367 LIRDM 371
>gi|16797876|gb|AAL29196.1|AF323683_1 nuclear receptor AmNR4 isoform A [Acropora millepora]
Length = 416
Score = 41.2 bits (95), Expect = 0.085, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 28/58 (48%)
Query: 39 SKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
SK IQ L Y+ +P+ P RF KI L LP + + EELFF +IG
Sbjct: 341 SKQVERIQDKAHCALKNYVENKHPNFPERFAKILLRLPATRMLTQRAAEELFFSPLIG 398
>gi|358412829|ref|XP_002704762.2| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Bos
taurus]
gi|359066798|ref|XP_002688591.2| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Bos
taurus]
Length = 412
Score = 41.2 bits (95), Expect = 0.086, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 334 SLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIET 392
Query: 104 TIWHM 108
I M
Sbjct: 393 LIRDM 397
>gi|20070199|ref|NP_005225.2| nuclear receptor subfamily 2 group F member 6 [Homo sapiens]
gi|23503053|sp|P10588.2|NR2F6_HUMAN RecName: Full=Nuclear receptor subfamily 2 group F member 6;
AltName: Full=V-erbA-related protein 2; Short=EAR-2
gi|119604986|gb|EAW84580.1| nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
gi|127798390|gb|AAH02669.3| Nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
gi|127799092|gb|AAH63018.2| Nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
gi|127799948|gb|AAH84544.2| Nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
gi|189054615|dbj|BAG37465.1| unnamed protein product [Homo sapiens]
gi|208966888|dbj|BAG73458.1| nuclear receptor subfamily 2, group F, member 6 [synthetic
construct]
gi|325495513|gb|ADZ17362.1| nuclear receptor V-erbA-related [Homo sapiens]
Length = 404
Score = 41.2 bits (95), Expect = 0.086, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 326 SLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIET 384
Query: 104 TIWHM 108
I M
Sbjct: 385 LIRDM 389
>gi|260829327|ref|XP_002609613.1| hypothetical protein BRAFLDRAFT_87834 [Branchiostoma floridae]
gi|229294975|gb|EEN65623.1| hypothetical protein BRAFLDRAFT_87834 [Branchiostoma floridae]
Length = 414
Score = 41.2 bits (95), Expect = 0.086, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 41 FTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 97
+ A+Q Q LN+Y P + RF +I L++P L+ I + ELFFR +I +
Sbjct: 345 YIEALQKEAQQALNEYTMMTRPLETLRFARILLMVPLLRGIKQEPITELFFRPLIAN 401
>gi|114675979|ref|XP_001173294.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Pan
troglodytes]
gi|410209646|gb|JAA02042.1| nuclear receptor subfamily 2, group F, member 6 [Pan troglodytes]
gi|410259260|gb|JAA17596.1| nuclear receptor subfamily 2, group F, member 6 [Pan troglodytes]
gi|410296550|gb|JAA26875.1| nuclear receptor subfamily 2, group F, member 6 [Pan troglodytes]
gi|410337621|gb|JAA37757.1| nuclear receptor subfamily 2, group F, member 6 [Pan troglodytes]
Length = 404
Score = 41.2 bits (95), Expect = 0.087, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 326 SLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIET 384
Query: 104 TIWHM 108
I M
Sbjct: 385 LIRDM 389
>gi|31065|emb|CAA31282.1| unnamed protein product [Homo sapiens]
Length = 403
Score = 41.2 bits (95), Expect = 0.087, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 325 SLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIET 383
Query: 104 TIWHM 108
I M
Sbjct: 384 LIRDM 388
>gi|440893234|gb|ELR46081.1| Nuclear receptor subfamily 2 group F member 6, partial [Bos
grunniens mutus]
Length = 441
Score = 41.2 bits (95), Expect = 0.088, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 363 SLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIET 421
Query: 104 TIWHM 108
I M
Sbjct: 422 LIRDM 426
>gi|311249241|ref|XP_003123537.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Sus
scrofa]
Length = 414
Score = 41.2 bits (95), Expect = 0.088, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 336 SLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIET 394
Query: 104 TIWHM 108
I M
Sbjct: 395 LIRDM 399
>gi|297276426|ref|XP_001114305.2| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
isoform 1 [Macaca mulatta]
Length = 404
Score = 41.2 bits (95), Expect = 0.088, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 326 SLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIET 384
Query: 104 TIWHM 108
I M
Sbjct: 385 LIRDM 389
>gi|216409732|dbj|BAH02303.1| nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
Length = 401
Score = 41.2 bits (95), Expect = 0.088, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 323 SLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIET 381
Query: 104 TIWHM 108
I M
Sbjct: 382 LIRDM 386
>gi|431921971|gb|ELK19144.1| Nuclear receptor subfamily 2 group F member 6 [Pteropus alecto]
Length = 481
Score = 41.2 bits (95), Expect = 0.088, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 403 SLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIET 461
Query: 104 TIWHM 108
I M
Sbjct: 462 LIRDM 466
>gi|387541468|gb|AFJ71361.1| nuclear receptor subfamily 2 group F member 6 [Macaca mulatta]
Length = 404
Score = 41.2 bits (95), Expect = 0.088, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 326 SLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIET 384
Query: 104 TIWHM 108
I M
Sbjct: 385 LIRDM 389
>gi|148233922|ref|NP_001080181.1| nuclear receptor subfamily 2, group F, member 6 [Xenopus laevis]
gi|33416678|gb|AAH56043.1| Nr2f6 protein [Xenopus laevis]
Length = 389
Score = 41.2 bits (95), Expect = 0.088, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 311 SLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIET 369
Query: 104 TIWHM 108
I M
Sbjct: 370 LIRDM 374
>gi|52345586|ref|NP_001004841.1| nuclear receptor subfamily 2, group F, member 6 [Xenopus (Silurana)
tropicalis]
gi|49250456|gb|AAH74651.1| nuclear receptor subfamily 2, group F, member 6 [Xenopus (Silurana)
tropicalis]
Length = 389
Score = 41.2 bits (95), Expect = 0.089, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 311 SLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIET 369
Query: 104 TIWHM 108
I M
Sbjct: 370 LIRDM 374
>gi|345325512|ref|XP_001506145.2| PREDICTED: nuclear receptor subfamily 2 group F member 1-B-like
[Ornithorhynchus anatinus]
Length = 342
Score = 41.2 bits (95), Expect = 0.089, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 264 SLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIET 322
Query: 104 TIWHM 108
I M
Sbjct: 323 LIRDM 327
>gi|410950838|ref|XP_003982110.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Felis
catus]
Length = 263
Score = 40.8 bits (94), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 185 SLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIET 243
Query: 104 TIWHM 108
I M
Sbjct: 244 LIRDM 248
>gi|397494017|ref|XP_003817891.1| PREDICTED: nuclear receptor subfamily 2 group F member 6, partial
[Pan paniscus]
Length = 429
Score = 40.8 bits (94), Expect = 0.090, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 351 SLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIET 409
Query: 104 TIWHM 108
I M
Sbjct: 410 LIRDM 414
>gi|332253632|ref|XP_003275940.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Nomascus
leucogenys]
Length = 366
Score = 40.8 bits (94), Expect = 0.091, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 288 SLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIET 346
Query: 104 TIWHM 108
I M
Sbjct: 347 LIRDM 351
>gi|189238719|ref|XP_970391.2| PREDICTED: similar to Hormone receptor 51 CG16801-PA [Tribolium
castaneum]
Length = 393
Score = 40.8 bits (94), Expect = 0.091, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q Q+ L ++ T P Q RF ++ L+LP L+ +P+ +E +FF+ IG NT ++K
Sbjct: 328 LQDQAQVMLWQHCRTQLPGQVARFGRLLLMLPLLRIVPASRVEAVFFQKTIG-NTPMEKV 386
Query: 105 IWHMYKN 111
+ MYKN
Sbjct: 387 LCDMYKN 393
>gi|20806167|ref|NP_620813.1| nuclear receptor subfamily 2 group F member 6 [Rattus norvegicus]
gi|10720384|sp|O09017.1|NR2F6_RAT RecName: Full=Nuclear receptor subfamily 2 group F member 6;
AltName: Full=COUPg; AltName: Full=Ovalbumin upstream
promoter gamma nuclear receptor; AltName:
Full=V-erbA-related protein 2; Short=EAR-2
gi|2197123|gb|AAB61296.1| ovalbumin upstream promoter gamma nuclear receptor rCOUPg [Rattus
norvegicus]
Length = 390
Score = 40.8 bits (94), Expect = 0.091, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 313 SLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIET 371
Query: 104 TIWHM 108
I M
Sbjct: 372 LIRDM 376
>gi|409758|gb|AAA37532.1| transcription factor [Mus musculus]
Length = 389
Score = 40.8 bits (94), Expect = 0.092, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 312 SLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIET 370
Query: 104 TIWHM 108
I M
Sbjct: 371 LIRDM 375
>gi|395847866|ref|XP_003796585.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Otolemur
garnettii]
Length = 410
Score = 40.8 bits (94), Expect = 0.092, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 332 SLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIET 390
Query: 104 TIWHM 108
I M
Sbjct: 391 LIRDM 395
>gi|16797878|gb|AAL29197.1|AF323684_1 nuclear receptor AmNR4 isoform B [Acropora millepora]
Length = 408
Score = 40.8 bits (94), Expect = 0.093, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 28/58 (48%)
Query: 39 SKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
SK IQ L Y+ +P+ P RF KI L LP + + EELFF +IG
Sbjct: 333 SKQVERIQDKAHCALKNYVENKHPNFPERFAKILLRLPATRMLTQRAAEELFFSPLIG 390
>gi|312381897|gb|EFR27526.1| hypothetical protein AND_05729 [Anopheles darlingi]
Length = 399
Score = 40.8 bits (94), Expect = 0.094, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q Q+ L ++ T +P Q RF ++ L+LP L+++ S +E ++F+ IG NT ++K
Sbjct: 334 LQDQAQVMLAQHSRTQFPGQIARFGRLLLMLPLLRAVNSQKIESIYFQKTIG-NTPMEKV 392
Query: 105 IWHMYKN 111
+ MYKN
Sbjct: 393 LCDMYKN 399
>gi|242008309|ref|XP_002424949.1| retinoid X receptor, putative [Pediculus humanus corporis]
gi|212508563|gb|EEB12211.1| retinoid X receptor, putative [Pediculus humanus corporis]
Length = 420
Score = 40.8 bits (94), Expect = 0.094, Method: Composition-based stats.
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 14/96 (14%)
Query: 1 MFQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTV 60
M +TEL LR + N E+R + + +R K AA++ +T++
Sbjct: 321 MDRTELGCLRSIILFNP--EVRGLKSGQEVELLR----EKVYAALEEYTRV--------T 366
Query: 61 YPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
P +P RF K+ L LP L+SI LE LFF +IG
Sbjct: 367 RPEEPGRFAKLLLRLPALRSIGLKCLEHLFFFRLIG 402
>gi|156394045|ref|XP_001636637.1| predicted protein [Nematostella vectensis]
gi|156223742|gb|EDO44574.1| predicted protein [Nematostella vectensis]
Length = 196
Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
A+Q TQ L +YI YP P RF ++ L L L ++ ++E +FF ++G
Sbjct: 124 AVQNKTQNALEEYIRVHYPQTPNRFGQVLLRLTALGAVECKIIEHVFFNKLLG 176
>gi|112807199|ref|NP_034280.2| nuclear receptor subfamily 2 group F member 6 [Mus musculus]
gi|341941192|sp|P43136.2|NR2F6_MOUSE RecName: Full=Nuclear receptor subfamily 2 group F member 6;
AltName: Full=COUP transcription factor 3;
Short=COUP-TF3; AltName: Full=V-erbA-related protein 2;
Short=EAR-2
gi|14198162|gb|AAH08138.1| Nuclear receptor subfamily 2, group F, member 6 [Mus musculus]
gi|74143003|dbj|BAE42523.1| unnamed protein product [Mus musculus]
gi|74203464|dbj|BAE20887.1| unnamed protein product [Mus musculus]
gi|148696964|gb|EDL28911.1| nuclear receptor subfamily 2, group F, member 6, isoform CRA_b [Mus
musculus]
Length = 390
Score = 40.8 bits (94), Expect = 0.094, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 313 SLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIET 371
Query: 104 TIWHM 108
I M
Sbjct: 372 LIRDM 376
>gi|403303546|ref|XP_003942387.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Saimiri
boliviensis boliviensis]
Length = 238
Score = 40.8 bits (94), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 160 SLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIET 218
Query: 104 TIWHM 108
I M
Sbjct: 219 LIRDM 223
>gi|14994052|gb|AAK76400.1| retinoid X receptor beta [Scophthalmus maximus]
Length = 277
Score = 40.8 bits (94), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 232 LESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 275
>gi|31376304|dbj|BAC77243.1| retinoid X receptor [Oreochromis niloticus]
Length = 267
Score = 40.8 bits (94), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG---HNT 99
L Y YP Q RF K+ L LP L+SI LE LFF +IG H+T
Sbjct: 209 LEAYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTRHDT 258
>gi|301753845|ref|XP_002912831.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
F member 6-like, partial [Ailuropoda melanoleuca]
Length = 323
Score = 40.8 bits (94), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 245 SLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIET 303
Query: 104 TIWHM 108
I M
Sbjct: 304 LIRDM 308
>gi|16580817|dbj|BAB71759.1| retinoid X receptor gamma [Paralichthys olivaceus]
Length = 293
Score = 40.8 bits (94), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 24/45 (53%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 97
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 244 LESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 288
>gi|327268349|ref|XP_003218960.1| PREDICTED: nuclear receptor subfamily 0 group B member 1-like
[Anolis carolinensis]
Length = 268
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%)
Query: 40 KFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
++ +Q Q LN+++ ++ RF K+ + L L+SI + V+ ELFFR IIG
Sbjct: 196 QYIQGLQQEAQQALNEHVRLIHRGDEARFAKLNVALSMLRSINANVIAELFFRPIIG 252
>gi|427796277|gb|JAA63590.1| Putative retinoid x receptor alpha a, partial [Rhipicephalus
pulchellus]
Length = 420
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 14/96 (14%)
Query: 1 MFQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTV 60
M +TEL LR V N + + ++ R +R K AA++ H +
Sbjct: 321 MDKTELGCLRAVVLFNP--DAKGLKSTERVEMLR----EKVYAALEEHCKRH-------- 366
Query: 61 YPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
+P QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 367 HPDQPGRFGKLLLRLPALRSIGLKCLEHLFFFKLIG 402
>gi|427778501|gb|JAA54702.1| Putative retinoid x receptor alpha a [Rhipicephalus pulchellus]
Length = 448
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 14/96 (14%)
Query: 1 MFQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTV 60
M +TEL LR V N + + ++ R +R K AA++ H +
Sbjct: 349 MDKTELGCLRAVVLFNP--DAKGLKSTERVEMLR----EKVYAALEEHCKRH-------- 394
Query: 61 YPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
+P QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 395 HPDQPGRFGKLLLRLPALRSIGLKCLEHLFFFKLIG 430
>gi|427777855|gb|JAA54379.1| Putative retinoid x receptor alpha a [Rhipicephalus pulchellus]
Length = 407
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 14/96 (14%)
Query: 1 MFQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTV 60
M +TEL LR V N + + ++ R +R K AA++ H +
Sbjct: 308 MDKTELGCLRAVVLFNP--DAKGLKSTERVEMLR----EKVYAALEEHCKRH-------- 353
Query: 61 YPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
+P QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 354 HPDQPGRFGKLLLRLPALRSIGLKCLEHLFFFKLIG 389
>gi|157109777|ref|XP_001650818.1| Dissatisfaction (Dsf) [Aedes aegypti]
gi|108878920|gb|EAT43145.1| AAEL005381-PA, partial [Aedes aegypti]
Length = 723
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q Q L+ ++ YP QPTRF ++ L+LP L++I S+ +E LFF+ IG I +
Sbjct: 636 LQDQAQCVLSDHVRVRYPRQPTRFGRLLLLLPLLRTIRSVTIETLFFKETIG-TVPISRL 694
Query: 105 IWHMYK 110
+ MY+
Sbjct: 695 LIDMYQ 700
>gi|24210302|emb|CAD54660.1| retinoid x receptor, beta [Danio rerio]
Length = 129
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 110
L Y YP Q RF K+ L LP L+SI LE LFF +IG +T I + M +
Sbjct: 67 LEAYCKQRYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEMLE 123
>gi|355707900|gb|AES03100.1| nuclear receptor subfamily 2, group F, member 6 [Mustela putorius
furo]
Length = 214
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 137 SLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIET 195
Query: 104 TIWHM 108
I M
Sbjct: 196 LIRDM 200
>gi|270011038|gb|EFA07486.1| hormone receptor 51 [Tribolium castaneum]
Length = 470
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q Q+ L ++ T P Q RF ++ L+LP L+ +P+ +E +FF+ IG NT ++K
Sbjct: 405 LQDQAQVMLWQHCRTQLPGQVARFGRLLLMLPLLRIVPASRVEAVFFQKTIG-NTPMEKV 463
Query: 105 IWHMYKN 111
+ MYKN
Sbjct: 464 LCDMYKN 470
>gi|432910588|ref|XP_004078428.1| PREDICTED: nuclear receptor subfamily 2 group F member 5-like
[Oryzias latipes]
Length = 404
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 35/53 (66%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
+IQ +Q L +Y+ YPSQP RF ++ L LP L+ + S V+E+LFF ++G
Sbjct: 311 SIQEKSQCALEEYVRNQYPSQPNRFGRLLLRLPSLRIVSSPVIEQLFFVRLVG 363
>gi|328792134|ref|XP_396999.4| PREDICTED: photoreceptor-specific nuclear receptor [Apis mellifera]
gi|380028656|ref|XP_003698008.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Apis
florea]
Length = 538
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q Q+ L ++ P P RF ++ L+LP L+++P+ +E ++F IG NT ++K
Sbjct: 473 LQDQAQVMLGQHARAQQPGSPARFGRLLLLLPLLRTVPASRVELIYFHRTIG-NTPMEKV 531
Query: 105 IWHMYKN 111
+ MYKN
Sbjct: 532 LCDMYKN 538
>gi|184161289|gb|ACC68676.1| nuclear receptor subfamily 0 group B member 1 [Apalone mutica]
Length = 89
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 38 GSKFTAAIQG---HTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNI 94
G + IQG Q LN+++ ++ RF K+ ++L L+SI + V+ ELFFR I
Sbjct: 17 GLQCVQYIQGPQREAQQALNEHVRLIHQGDQARFAKLNVVLSLLRSINANVITELFFRPI 76
Query: 95 IG 96
IG
Sbjct: 77 IG 78
>gi|3929579|gb|AAC80008.1| retinoic acid X receptor [Tripedalia cystophora]
Length = 435
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L ++ +P QP RF K+ L +P LKSI LE L+F +IG
Sbjct: 375 LEDHVKRKHPEQPDRFTKVILRIPALKSIGLQALEHLYFFKLIG 418
>gi|410904505|ref|XP_003965732.1| PREDICTED: nuclear receptor subfamily 2 group F member 5-like
[Takifugu rubripes]
Length = 404
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 35/53 (66%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
+IQ +Q L +Y+ YPSQP RF ++ L LP L+ + S V+E+LFF ++G
Sbjct: 311 SIQEKSQCALEEYVRNQYPSQPNRFGRLLLRLPSLRIVSSPVIEQLFFVRLVG 363
>gi|395533940|ref|XP_003769007.1| PREDICTED: LOW QUALITY PROTEIN: retinoic acid receptor RXR-beta
[Sarcophilus harrisii]
Length = 524
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 462 LESYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 505
>gi|340709633|ref|XP_003393408.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Bombus
terrestris]
gi|350422440|ref|XP_003493165.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Bombus
impatiens]
Length = 540
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q Q+ L ++ P P RF ++ L+LP L+++P+ +E ++F IG NT ++K
Sbjct: 475 LQDQAQVMLGQHARAQQPGSPARFGRLLLLLPLLRTVPASRVELIYFHRTIG-NTPMEKV 533
Query: 105 IWHMYKN 111
+ MYKN
Sbjct: 534 LCDMYKN 540
>gi|334323757|ref|XP_001377435.2| PREDICTED: retinoic acid receptor RXR-beta-like [Monodelphis
domestica]
Length = 597
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 535 LESYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 578
>gi|327290672|ref|XP_003230046.1| PREDICTED: retinoic acid receptor RXR-beta-like, partial [Anolis
carolinensis]
Length = 388
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 326 LESYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 369
>gi|66472508|ref|NP_001018458.1| nuclear receptor subfamily 2 group C member 1 [Danio rerio]
gi|63102167|gb|AAH95365.1| Nuclear receptor subfamily 2, group C, member 1 [Danio rerio]
Length = 600
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 110
L Y+ VYP R K+ + LP L+ + + V EELFF +IG N I I ++ K
Sbjct: 529 LQDYVSKVYPEDTYRLSKLLVRLPALRLMSAAVTEELFFAGLIG-NVQIDSIIPYILK 585
>gi|348511313|ref|XP_003443189.1| PREDICTED: nuclear receptor subfamily 2 group F member 5-like
[Oreochromis niloticus]
Length = 404
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 35/53 (66%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
+IQ +Q L +Y+ YPSQP RF ++ L LP L+ + S V+E+LFF ++G
Sbjct: 311 SIQEKSQCALEEYVRNQYPSQPNRFGRLLLRLPSLRIVSSPVIEQLFFVRLVG 363
>gi|68132040|gb|AAY85286.1| TR2, partial [Danio rerio]
Length = 580
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 110
L Y+ VYP R K+ + LP L+ + + V EELFF +IG N I I ++ K
Sbjct: 513 LQDYVSKVYPEDTYRLSKLLVRLPALRLMSAAVTEELFFAGLIG-NVQIDSIIPYILK 569
>gi|47214501|emb|CAG00925.1| unnamed protein product [Tetraodon nigroviridis]
Length = 383
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 35/53 (66%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
+IQ +Q L +Y+ YPSQP RF ++ L LP L+ + S V+E+LFF ++G
Sbjct: 309 SIQEKSQCALEEYVRNQYPSQPNRFGRLLLRLPSLRIVSSPVIEQLFFVRLVG 361
>gi|83318203|gb|AAI08461.1| Rxrb-a protein [Xenopus laevis]
Length = 458
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 396 LESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 439
>gi|71051362|gb|AAH99003.1| Rxrb-A-prov protein, partial [Xenopus laevis]
Length = 458
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 396 LESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 439
>gi|62860048|ref|NP_001015937.1| retinoid X receptor, beta [Xenopus (Silurana) tropicalis]
gi|89268107|emb|CAJ83850.1| Retinoic acid receptor RXR-beta (Retinoid X receptor beta) [Xenopus
(Silurana) tropicalis]
Length = 449
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 387 LESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 430
>gi|226432209|gb|ACO55650.1| retinoid X receptor beta [Paralichthys olivaceus]
Length = 417
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 355 LESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 398
>gi|215539467|gb|AAI69986.1| Rxrb-a protein [Xenopus laevis]
Length = 445
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 383 LESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 426
>gi|197941310|gb|ACH78359.1| retinoid X receptor beta, partial [Sebastiscus marmoratus]
Length = 450
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 401 LESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 444
>gi|189442705|gb|AAI67577.1| rxrb protein [Xenopus (Silurana) tropicalis]
Length = 412
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 350 LESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 393
>gi|49114890|gb|AAH73179.1| Rxrb-A-prov protein, partial [Xenopus laevis]
Length = 451
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 389 LESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 432
>gi|47940249|gb|AAH72132.1| Rxrb protein [Xenopus laevis]
Length = 449
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 387 LESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 430
>gi|148234156|ref|NP_001081830.1| retinoid X receptor, beta [Xenopus laevis]
gi|685085|gb|AAC60748.1| xRXR beta [Xenopus laevis]
Length = 452
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 390 LESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 433
>gi|18652797|gb|AAL76089.1| nuclear receptor DAX1 [Lepidochelys olivacea]
Length = 87
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%)
Query: 40 KFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
++ +Q Q LN+ + ++ RF K+ ++L L+SI + V+ ELFFR IIG
Sbjct: 24 QYIQGLQREAQQALNERVRLLHRGDQARFAKLNVVLSLLRSINANVIAELFFRPIIG 80
>gi|148230344|ref|NP_001080936.1| retinoid X receptor, beta [Xenopus laevis]
gi|840922|emb|CAA60792.1| retinoid X receptor beta [Xenopus laevis]
Length = 412
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 350 LESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 393
>gi|358251516|gb|AEU04707.1| retinoid X receptor alpha [Lateolabrax japonicus]
Length = 440
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 22/39 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFF 91
L Y YP QP RF K+ L LP L+SI LE LFF
Sbjct: 401 LEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
>gi|146147384|gb|ABQ01987.1| retinoid X receptor beta [Salmo salar]
gi|148362152|gb|ABQ59675.1| RXR [Salmo salar]
Length = 430
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 368 LESYCKQRYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 411
>gi|482930|emb|CAA54097.1| EAR2 [Mus musculus]
Length = 390
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 313 SLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISKLFFMRLVG-KTPIET 371
Query: 104 TIWHM 108
I M
Sbjct: 372 LIRDM 376
>gi|444729063|gb|ELW69492.1| Retinoic acid receptor RXR-beta [Tupaia chinensis]
Length = 408
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 346 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 389
>gi|440909606|gb|ELR59495.1| Retinoic acid receptor RXR-beta [Bos grunniens mutus]
Length = 518
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 456 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 499
>gi|432094623|gb|ELK26129.1| Retinoic acid receptor RXR-beta [Myotis davidii]
Length = 574
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 512 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 555
>gi|431916881|gb|ELK16641.1| Retinoic acid receptor RXR-beta [Pteropus alecto]
Length = 531
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 469 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 512
>gi|426352703|ref|XP_004043849.1| PREDICTED: retinoic acid receptor RXR-beta [Gorilla gorilla
gorilla]
Length = 533
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 471 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 514
>gi|426250132|ref|XP_004018792.1| PREDICTED: retinoic acid receptor RXR-beta [Ovis aries]
Length = 536
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 474 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 517
>gi|139948543|ref|NP_001077109.1| retinoic acid receptor RXR-beta [Bos taurus]
gi|63169170|gb|AAY34706.1| retinoid X receptor beta [Bos taurus]
Length = 532
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 470 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 513
>gi|337720|gb|AAA60293.1| retinoid X receptor beta [Homo sapiens]
Length = 533
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 471 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 514
>gi|7709422|gb|AAA40081.2| retinoid X receptor beta [Mus musculus]
Length = 448
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 386 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 429
>gi|387184|gb|AAA37772.1| MHC class I regulatory element binding protein (H-2RIIBP), partial
[Mus musculus]
Length = 446
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 384 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 427
>gi|73972484|ref|XP_538856.2| PREDICTED: retinoid X receptor, beta isoform 1 [Canis lupus
familiaris]
Length = 532
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 470 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 513
>gi|71681086|gb|AAH99776.1| Rxrb protein, partial [Rattus norvegicus]
Length = 485
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 423 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 466
>gi|327315356|ref|NP_001192143.1| retinoic acid receptor RXR-beta isoform 1 [Mus musculus]
gi|74198206|dbj|BAE35275.1| unnamed protein product [Mus musculus]
Length = 524
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 462 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 505
>gi|62900941|sp|Q5TJF7.1|RXRB_CANFA RecName: Full=Retinoic acid receptor RXR-beta; AltName:
Full=Nuclear receptor subfamily 2 group B member 2;
AltName: Full=Retinoid X receptor beta
gi|55956944|emb|CAI11431.1| retinoid X receptor beta [Canis lupus familiaris]
Length = 533
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 471 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 514
>gi|206603|gb|AAA42025.1| nuclear receptor co-regulator 1 [Rattus sp.]
Length = 451
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 389 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 432
>gi|13489062|ref|NP_035436.1| retinoic acid receptor RXR-beta isoform 2 [Mus musculus]
gi|1350912|sp|P28704.2|RXRB_MOUSE RecName: Full=Retinoic acid receptor RXR-beta; AltName: Full=MHC
class I regulatory element-binding protein H-2RIIBP;
AltName: Full=Nuclear receptor subfamily 2 group B
member 2; AltName: Full=Retinoid X receptor beta
gi|987669|dbj|BAA04858.1| RXR-beta1 isoform [Mus musculus]
gi|3811388|gb|AAC69904.1| RXRbeta [Mus musculus]
gi|29437348|gb|AAH49773.1| Retinoid X receptor beta [Mus musculus]
gi|148678301|gb|EDL10248.1| retinoid X receptor beta, isoform CRA_c [Mus musculus]
Length = 520
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 458 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 501
>gi|417410882|gb|JAA51906.1| Putative retinoic acid receptor rxr-beta, partial [Desmodus
rotundus]
Length = 459
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 397 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 440
>gi|417410382|gb|JAA51665.1| Putative retinoic acid receptor rxr-beta, partial [Desmodus
rotundus]
Length = 398
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 336 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 379
>gi|410958898|ref|XP_003986050.1| PREDICTED: retinoic acid receptor RXR-beta [Felis catus]
Length = 532
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 470 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 513
>gi|403261960|ref|XP_003923366.1| PREDICTED: retinoic acid receptor RXR-beta [Saimiri boliviensis
boliviensis]
Length = 505
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 443 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 486
>gi|395832129|ref|XP_003789128.1| PREDICTED: retinoic acid receptor RXR-beta [Otolemur garnettii]
Length = 532
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 470 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 513
>gi|380800431|gb|AFE72091.1| retinoic acid receptor RXR-beta, partial [Macaca mulatta]
Length = 478
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 416 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 459
>gi|355748459|gb|EHH52942.1| hypothetical protein EGM_13484, partial [Macaca fascicularis]
Length = 475
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 413 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 456
>gi|355561583|gb|EHH18215.1| hypothetical protein EGK_14773 [Macaca mulatta]
Length = 477
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 415 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 458
>gi|354487523|ref|XP_003505922.1| PREDICTED: retinoic acid receptor RXR-beta-like [Cricetulus
griseus]
Length = 546
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 484 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 527
>gi|351703545|gb|EHB06464.1| Retinoic acid receptor RXR-beta [Heterocephalus glaber]
Length = 520
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 458 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 501
>gi|348576404|ref|XP_003473977.1| PREDICTED: retinoic acid receptor RXR-beta-like [Cavia porcellus]
Length = 531
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 469 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 512
>gi|344298826|ref|XP_003421092.1| PREDICTED: retinoic acid receptor RXR-beta-like [Loxodonta
africana]
Length = 532
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 470 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 513
>gi|332246155|ref|XP_003272215.1| PREDICTED: retinoic acid receptor RXR-beta [Nomascus leucogenys]
Length = 533
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 471 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 514
>gi|301757105|ref|XP_002914382.1| PREDICTED: retinoic acid receptor RXR-beta-like [Ailuropoda
melanoleuca]
Length = 532
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 470 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 513
>gi|297661275|ref|XP_002809190.1| PREDICTED: retinoic acid receptor RXR-beta isoform 1 [Pongo abelii]
Length = 532
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 470 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 513
>gi|297290572|ref|XP_001108780.2| PREDICTED: retinoic acid receptor RXR-beta-like [Macaca mulatta]
Length = 534
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 472 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 515
>gi|296197857|ref|XP_002746468.1| PREDICTED: retinoic acid receptor RXR-beta isoform 1 [Callithrix
jacchus]
Length = 532
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 470 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 513
>gi|291396013|ref|XP_002714529.1| PREDICTED: Retinoic acid receptor RXR-beta-like [Oryctolagus
cuniculus]
Length = 537
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 475 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 518
>gi|281338473|gb|EFB14057.1| hypothetical protein PANDA_002281 [Ailuropoda melanoleuca]
Length = 536
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 474 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 517
>gi|66347234|emb|CAI95622.1| retinoid X receptor, beta [Homo sapiens]
Length = 482
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 420 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 463
>gi|148877301|gb|AAI46261.1| Retinoid X receptor, beta [Bos taurus]
gi|296474560|tpg|DAA16675.1| TPA: retinoid X receptor, beta [Bos taurus]
Length = 532
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 470 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 513
>gi|148678299|gb|EDL10246.1| retinoid X receptor beta, isoform CRA_a [Mus musculus]
Length = 451
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 389 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 432
>gi|148678300|gb|EDL10247.1| retinoid X receptor beta, isoform CRA_b [Mus musculus]
Length = 455
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 393 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 436
>gi|298228982|ref|NP_001177175.1| retinoic acid receptor RXR-beta [Sus scrofa]
gi|147223294|emb|CAN13296.1| retinoid X receptor, beta [Sus scrofa]
Length = 532
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 470 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 513
>gi|147223296|emb|CAN13298.1| retinoid X receptor, beta [Sus scrofa]
Length = 414
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 352 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 395
>gi|393715097|ref|NP_001257330.1| retinoic acid receptor RXR-beta isoform 1 [Homo sapiens]
gi|168277536|dbj|BAG10746.1| retinoic acid receptor RXR-beta [synthetic construct]
gi|325495561|gb|ADZ17386.1| retinoid X nuclear receptor beta [Homo sapiens]
gi|410222102|gb|JAA08270.1| retinoid X receptor, beta [Pan troglodytes]
gi|410263018|gb|JAA19475.1| retinoid X receptor, beta [Pan troglodytes]
gi|410295526|gb|JAA26363.1| retinoid X receptor, beta [Pan troglodytes]
gi|410330371|gb|JAA34132.1| retinoid X receptor, beta [Pan troglodytes]
Length = 537
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 475 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 518
>gi|77404367|ref|NP_996731.2| retinoic acid receptor RXR-beta [Rattus norvegicus]
gi|149043372|gb|EDL96823.1| rCG60716 [Rattus norvegicus]
Length = 518
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 456 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 499
>gi|62088068|dbj|BAD92481.1| retinoid X receptor, beta variant [Homo sapiens]
Length = 577
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 515 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 558
>gi|55956943|emb|CAI11430.1| retinoid X receptor beta [Canis lupus familiaris]
Length = 458
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 396 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 439
>gi|46237552|emb|CAE83933.1| retinoid X receptor beta [Rattus norvegicus]
Length = 451
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 389 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 432
>gi|327315358|ref|NP_001192144.1| retinoic acid receptor RXR-beta isoform 3 [Mus musculus]
gi|18044456|gb|AAH19432.1| Rxrb protein [Mus musculus]
gi|74150089|dbj|BAE24359.1| unnamed protein product [Mus musculus]
Length = 414
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 352 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 395
>gi|327315360|ref|NP_001192145.1| retinoic acid receptor RXR-beta isoform 4 [Mus musculus]
gi|54024|emb|CAA46963.1| retinoid X receptor-beta [Mus musculus]
gi|987670|dbj|BAA04859.1| RXR-beta2 isoform [Mus musculus]
Length = 410
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 348 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 391
>gi|16118883|gb|AAL14642.1| retinoid X receptor beta [Neovison vison]
Length = 525
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 463 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 506
>gi|11415052|ref|NP_068811.1| retinoic acid receptor RXR-beta isoform 2 [Homo sapiens]
gi|114606827|ref|XP_001168893.1| PREDICTED: retinoic acid receptor RXR-beta isoform 4 [Pan
troglodytes]
gi|397474336|ref|XP_003808638.1| PREDICTED: retinoic acid receptor RXR-beta [Pan paniscus]
gi|402866633|ref|XP_003897483.1| PREDICTED: retinoic acid receptor RXR-beta [Papio anubis]
gi|1350911|sp|P28702.2|RXRB_HUMAN RecName: Full=Retinoic acid receptor RXR-beta; AltName:
Full=Nuclear receptor subfamily 2 group B member 2;
AltName: Full=Retinoid X receptor beta
gi|30448|emb|CAA45087.1| retinoic acid X receptor b [Homo sapiens]
gi|3172498|gb|AAC18599.1| retinoic X receptor B [Homo sapiens]
gi|3820986|emb|CAA20239.1| retinoid X receptor, beta [Homo sapiens]
gi|4249766|gb|AAD13794.1| retinoic X receptor beta [Homo sapiens]
gi|12654659|gb|AAH01167.1| Retinoid X receptor, beta [Homo sapiens]
gi|30583399|gb|AAP35944.1| retinoid X receptor, beta [Homo sapiens]
gi|60655367|gb|AAX32247.1| retinoid X receptor beta [synthetic construct]
gi|119624084|gb|EAX03679.1| retinoid X receptor, beta [Homo sapiens]
gi|325495499|gb|ADZ17355.1| retinoid X nuclear receptor beta [Homo sapiens]
gi|410222100|gb|JAA08269.1| retinoid X receptor, beta [Pan troglodytes]
gi|410263016|gb|JAA19474.1| retinoid X receptor, beta [Pan troglodytes]
gi|410295524|gb|JAA26362.1| retinoid X receptor, beta [Pan troglodytes]
gi|410330369|gb|JAA34131.1| retinoid X receptor, beta [Pan troglodytes]
Length = 533
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 471 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 514
>gi|1710720|sp|P49743.1|RXRB_RAT RecName: Full=Retinoic acid receptor RXR-beta; AltName:
Full=Nuclear receptor coregulator 1; AltName:
Full=Nuclear receptor subfamily 2 group B member 2;
AltName: Full=Retinoid X receptor beta
Length = 458
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 396 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 439
>gi|344241392|gb|EGV97495.1| Nuclear receptor subfamily 2 group F member 6 [Cricetulus griseus]
Length = 91
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 14 SLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIET 72
Query: 104 TIWHM 108
I M
Sbjct: 73 LIRDM 77
>gi|432908440|ref|XP_004077862.1| PREDICTED: retinoic acid receptor RXR-beta-A [Oryzias latipes]
Length = 443
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 381 LEAYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 424
>gi|348533852|ref|XP_003454418.1| PREDICTED: retinoic acid receptor RXR-beta-A-like isoform 3
[Oreochromis niloticus]
Length = 434
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 372 LEAYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 415
>gi|348533850|ref|XP_003454417.1| PREDICTED: retinoic acid receptor RXR-beta-A-like isoform 2
[Oreochromis niloticus]
Length = 426
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 364 LEAYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 407
>gi|348533848|ref|XP_003454416.1| PREDICTED: retinoic acid receptor RXR-beta-A-like isoform 1
[Oreochromis niloticus]
Length = 412
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 350 LEAYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 393
>gi|338718022|ref|XP_001493349.2| PREDICTED: retinoic acid receptor RXR-beta-like [Equus caballus]
Length = 347
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 285 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 328
>gi|198285543|gb|ACH85310.1| retinoid x receptor beta a [Salmo salar]
Length = 373
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 311 LEAYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 354
>gi|195146576|ref|XP_002014260.1| GL19043 [Drosophila persimilis]
gi|194106213|gb|EDW28256.1| GL19043 [Drosophila persimilis]
Length = 819
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q Q L+ ++ Y Q TRF ++ L+LP L++I + +E LFF+ IG N I +
Sbjct: 745 LQDQAQCILSDHVRLRYSRQATRFGRLLLLLPSLRTIRASTIEALFFKETIG-NVPIARL 803
Query: 105 IWHMY 109
+ MY
Sbjct: 804 LRDMY 808
>gi|410926021|ref|XP_003976477.1| PREDICTED: retinoic acid receptor RXR-beta-A-like isoform 1
[Takifugu rubripes]
Length = 417
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 355 LEAYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 398
>gi|328496564|gb|AEB21388.1| COUP-TF protein [Hydractinia echinata]
Length = 339
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 39 SKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
S + +Q L Y T YP QP RF K+ L L ++ I ++V+E+LFF ++G
Sbjct: 247 SAYIHTLQEKAMNALESYTKTKYPLQPARFGKLLLRLSSIRPINTVVIEQLFFTWLVG 304
>gi|410926023|ref|XP_003976478.1| PREDICTED: retinoic acid receptor RXR-beta-A-like isoform 2
[Takifugu rubripes]
Length = 463
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 401 LEAYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 444
>gi|348541131|ref|XP_003458040.1| PREDICTED: retinoic acid receptor RXR-beta-A isoform 2 [Oreochromis
niloticus]
Length = 462
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 400 LEAYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 443
>gi|348541129|ref|XP_003458039.1| PREDICTED: retinoic acid receptor RXR-beta-A isoform 1 [Oreochromis
niloticus]
Length = 417
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 355 LEAYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 398
>gi|198475944|ref|XP_001357213.2| GA21482 [Drosophila pseudoobscura pseudoobscura]
gi|198137475|gb|EAL34282.2| GA21482 [Drosophila pseudoobscura pseudoobscura]
Length = 691
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q Q L+ ++ Y Q TRF ++ L+LP L++I + +E LFF+ IG N I +
Sbjct: 617 LQDQAQCILSDHVRLRYSRQATRFGRLLLLLPSLRTIRASTIEALFFKETIG-NVPIARL 675
Query: 105 IWHMY 109
+ MY
Sbjct: 676 LRDMY 680
>gi|156119469|ref|NP_001095229.1| nuclear receptor subfamily 2, group F, member 5 [Xenopus laevis]
gi|64643|emb|CAA44806.1| Coup transcription factor [Xenopus laevis]
Length = 397
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
+IQ +Q L +Y+ YP+QPTRF ++ L LP L+ + + V+E+LFF ++G T I+
Sbjct: 319 SIQEKSQCALEEYVRNQYPNQPTRFGRLLLRLPSLRIVSAPVIEQLFFVRLVG-KTPIET 377
Query: 104 TIWHM 108
I M
Sbjct: 378 LIRDM 382
>gi|348529246|ref|XP_003452125.1| PREDICTED: nuclear receptor subfamily 0 group B member 2
[Oreochromis niloticus]
gi|24710927|gb|AAN17673.1| orphan nuclear receptor SHP [Oreochromis niloticus]
gi|24710934|gb|AAN17674.1| orphan nuclear receptor SHP [Oreochromis niloticus]
Length = 258
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%)
Query: 41 FTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTT 100
F +Q Q L+K + ++P RF +I L L+SI ++ ELFFR +IG
Sbjct: 188 FVEGLQQEAQQALSKVVQLLHPGDGDRFARILLTASMLQSITPSLITELFFRPVIGQANL 247
Query: 101 IKKTIWHMY 109
++ + ++
Sbjct: 248 LELLVDMLF 256
>gi|47225542|emb|CAG12025.1| unnamed protein product [Tetraodon nigroviridis]
Length = 370
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 308 LEAYCKQRYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 351
>gi|410905545|ref|XP_003966252.1| PREDICTED: retinoic acid receptor RXR-beta-A-like [Takifugu
rubripes]
Length = 404
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 342 LEAYCKQRYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 385
>gi|358251510|gb|AEU04704.1| retinoid X receptor beta [Lateolabrax japonicus]
Length = 444
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 382 LEAYCKQRYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 425
>gi|225581113|gb|ACN94685.1| GA21482 [Drosophila miranda]
Length = 690
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q Q L+ ++ Y Q TRF ++ L+LP L++I + +E LFF+ IG N I +
Sbjct: 616 LQDQAQCILSDHVRLRYSRQATRFGRLLLLLPSLRTIRASTIEALFFKETIG-NVPIARL 674
Query: 105 IWHMY 109
+ MY
Sbjct: 675 LRDMY 679
>gi|57116110|gb|AAW33564.1| small heterodimer partner [Gallus gallus]
Length = 262
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 110
L + + ++P RF I LI LKSIP ++ +LFFR IIG+ ++ + +Y+
Sbjct: 191 LQEVVQILHPKDQDRFALILLITSTLKSIPPALITDLFFRPIIGNADIVELIVDMLYE 248
>gi|33386531|emb|CAD45002.1| retinoid X receptor beta [Takifugu rubripes]
Length = 370
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 308 LEAYCKQRYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 351
>gi|301618212|ref|XP_002938509.1| PREDICTED: nuclear receptor subfamily 2 group F member 5-like
[Xenopus (Silurana) tropicalis]
Length = 398
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
+IQ +Q L +Y+ YP+QPTRF ++ L LP L+ + + V+E+LFF ++G T I+
Sbjct: 320 SIQEKSQCALEEYVRNQYPNQPTRFGRLLLRLPSLRIVSAPVIEQLFFVRLVG-KTPIET 378
Query: 104 TIWHM 108
I M
Sbjct: 379 LIRDM 383
>gi|260802126|ref|XP_002595944.1| hypothetical protein BRAFLDRAFT_235500 [Branchiostoma floridae]
gi|229281196|gb|EEN51956.1| hypothetical protein BRAFLDRAFT_235500 [Branchiostoma floridae]
Length = 369
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q Q+ L ++ + + P RF ++ L LP L+ + +E +FF+ IG NT +++
Sbjct: 304 LQDQAQLMLAEHTRSQNRNHPIRFGRLLLTLPCLRHVGPDRIETIFFQRTIG-NTPMERL 362
Query: 105 IWHMYKN 111
+ M+KN
Sbjct: 363 LSDMFKN 369
>gi|52783388|sp|Q7SYN5.1|RXRBA_DANRE RecName: Full=Retinoic acid receptor RXR-beta-A; AltName:
Full=Nuclear receptor subfamily 2 group B member 2-A;
AltName: Full=Retinoid X receptor beta-A
gi|32451843|gb|AAH54649.1| Rxrba protein [Danio rerio]
Length = 471
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 409 LEAYCKQRYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 452
>gi|24308520|ref|NP_571350.1| retinoic acid receptor RXR-beta-A [Danio rerio]
gi|1046299|gb|AAC59722.1| retinoid X receptor epsilon [Danio rerio]
gi|94733758|emb|CAK11471.1| retinoid x receptor, beta [Danio rerio]
gi|1583307|prf||2120366B retinoid X receptor:ISOTYPE=epsilon
Length = 438
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 376 LEAYCKQRYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 419
>gi|94733756|emb|CAK11469.1| retinoid x receptor, beta [Danio rerio]
Length = 487
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 425 LEAYCKQRYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 468
>gi|5881250|gb|AAD55095.1|AF180295_1 DAX1 homolog, partial [Alligator mississippiensis]
Length = 245
Score = 40.0 bits (92), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%)
Query: 39 SKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
+++ +Q Q LN+++ ++ RF K+ + L L+SI + V+ ELFFR IIG
Sbjct: 172 TQYIQGLQREAQQALNEHVRLIHRGDQARFAKLNIALSLLRSINANVIAELFFRPIIG 229
>gi|47224450|emb|CAG08700.1| unnamed protein product [Tetraodon nigroviridis]
Length = 597
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 110
L Y+ YP R K+ + LP L+ I + V EELFF +IG N I I ++ K
Sbjct: 531 LQDYVSRTYPEDSYRLSKLLVRLPALRLISAAVTEELFFAGLIG-NVQIDSIIPYILK 587
>gi|355717628|gb|AES06000.1| retinoid X receptor, beta [Mustela putorius furo]
Length = 159
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 110
L Y YP Q RF K+ L LP L+SI LE LFF +IG +T I + M +
Sbjct: 97 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEMLE 153
>gi|224473826|gb|ACN49167.1| retinoid X receptor beta [Oryzias dancena]
Length = 111
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 110
L Y YP Q RF K+ L LP L+SI LE LFF +IG +T I + M +
Sbjct: 49 LEAYCKHKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEMLE 105
>gi|139002557|dbj|BAF52037.1| DSS-AHC critical region on the X chromosome, gene 1 [Xenopus
laevis]
Length = 274
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 35/57 (61%)
Query: 40 KFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
++ +Q Q LN++I ++ + TRF K+ ++L L+++ + + ELFFR IIG
Sbjct: 208 QYIQGLQHEAQQALNEHIKMIHRWEQTRFSKLMIVLSFLRTVNANAIAELFFRPIIG 264
>gi|157115449|ref|XP_001658211.1| expressed protein (HR51) [Aedes aegypti]
gi|108876909|gb|EAT41134.1| AAEL007190-PA [Aedes aegypti]
Length = 594
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q Q+ L ++ T +P Q RF ++ L+LP L+ I S +E ++F+ IG NT ++K
Sbjct: 529 LQDQAQVMLAQHSRTQFPGQIARFGRLLLMLPLLRIINSHKIESIYFQKTIG-NTPMEKV 587
Query: 105 IWHMYKN 111
+ MYKN
Sbjct: 588 LCDMYKN 594
>gi|148362145|gb|ABQ59669.1| RXRB [Salmo salar]
Length = 428
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 366 LESYCKHRYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 409
>gi|332025033|gb|EGI65220.1| Photoreceptor-specific nuclear receptor [Acromyrmex echinatior]
Length = 443
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q Q L Y + YP QP+R ++ +++ L+ + S +E LFF IG I +
Sbjct: 373 LQDQAQRILVDYTRSRYPQQPSRIGRLMILVGYLRCVSSKTVERLFFHETIGE-IPISRL 431
Query: 105 IWHMYK 110
+ MY+
Sbjct: 432 LVDMYQ 437
>gi|242009214|ref|XP_002425386.1| orphan nuclear receptor nr6a1, putative [Pediculus humanus
corporis]
gi|212509180|gb|EEB12648.1| orphan nuclear receptor nr6a1, putative [Pediculus humanus
corporis]
Length = 778
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 36 KTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNII 95
+ GS AIQ + L ++ +P QP RF ++ L LP ++S SL+LE F
Sbjct: 711 RGGSNELEAIQDRYMMCLKSFVEHSFPQQPARFHELLLRLPEIQSAASLLLESKMFYVPF 770
Query: 96 GHNTTIKK 103
N+ I++
Sbjct: 771 LLNSAIQR 778
>gi|35311|emb|CAA46456.1| MHC class I promoter binding protein [Homo sapiens]
Length = 231
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 110
L Y YP Q RF K+ L LP L+SI LE LFF +IG +T I + M +
Sbjct: 169 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEMLE 225
>gi|390354650|ref|XP_784246.3| PREDICTED: retinoic acid receptor RXR [Strongylocentrotus
purpuratus]
Length = 479
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L +Y Y +P RF K+ L LP L+SI LE LFF +IG
Sbjct: 418 LEEYCRNQYTDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 461
>gi|343113489|gb|AEL87703.1| retinoid X receptor alpha [Strongylocentrotus nudus]
Length = 481
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L +Y Y +P RF K+ L LP L+SI LE LFF +IG
Sbjct: 420 LEEYCRNQYTDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 463
>gi|344282642|ref|XP_003413082.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Loxodonta
africana]
Length = 408
Score = 40.0 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y+ YP+QP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 330 SLQEKAQVALTEYVRAQYPAQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIET 388
Query: 104 TIWHM 108
I M
Sbjct: 389 LIRDM 393
>gi|348556980|ref|XP_003464298.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Cavia porcellus]
Length = 396
Score = 40.0 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y+ YP+QP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 318 SLQEKAQVALTEYVRAQYPTQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIET 376
Query: 104 TIWHM 108
I M
Sbjct: 377 LIRDM 381
>gi|49259353|pdb|1UHL|A Chain A, Crystal Structure Of The Lxralfa-Rxrbeta Lbd Heterodimer
Length = 236
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 110
L Y YP Q RF K+ L LP L+SI LE LFF +IG +T I + M +
Sbjct: 174 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEMLE 230
>gi|118777094|ref|XP_307453.3| Anopheles gambiae str. PEST AGAP012600-PA [Anopheles gambiae str.
PEST]
gi|116133146|gb|EAA03055.4| AGAP012600-PA [Anopheles gambiae str. PEST]
Length = 202
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q Q+ L ++ T +P Q RF ++ L+LP L+++ S +E ++F+ IG NT ++K
Sbjct: 137 LQDQAQVMLAQHSRTQFPGQIARFGRLLLMLPLLRAVNSHKIESIYFQKTIG-NTPMEKV 195
Query: 105 IWHMYKN 111
+ MYKN
Sbjct: 196 LCDMYKN 202
>gi|432883656|ref|XP_004074314.1| PREDICTED: retinoic acid receptor RXR-beta-A [Oryzias latipes]
Length = 465
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 403 LETYCKHKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 446
>gi|61657777|emb|CAG17628.1| nuclear receptor subfamily 0, group B, member 1 [Dicentrarchus
labrax]
Length = 301
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 109
LN+++ ++ TRF K+ + L L++I LV+ +LFFR +IG I++ + M+
Sbjct: 243 LNEHVRLIHREDTTRFAKLLIALSMLRAINPLVVAQLFFRPVIGA-VNIEEVLMEMF 298
>gi|170048338|ref|XP_001851983.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167870434|gb|EDS33817.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 325
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 33 VRFKTGSKFTA---AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSI 81
R+ G A ++Q +Q L +Y + YP+QPTRF K+ L LP L+++
Sbjct: 46 ARYACGLSDVAHIESLQEKSQCALEEYCRSQYPNQPTRFGKLLLRLPSLRTV 97
>gi|344252996|gb|EGW09100.1| Retinoic acid receptor RXR-beta [Cricetulus griseus]
Length = 101
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 108
L Y YP Q RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 39 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 93
>gi|44969507|gb|AAS49607.1| nuclear receptor subfamily 2 group F member 1 [Scyliorhinus
canicula]
Length = 273
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVL 86
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+
Sbjct: 231 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVI 273
>gi|262263189|dbj|BAI48097.1| retinoid X receptor, beta [Sus scrofa]
Length = 106
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 108
L Y YP Q RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 44 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEM 98
>gi|44964649|gb|AAS49525.1| nuclear receptor subfamily 2 group F number 1 [Latimeria chalumnae]
Length = 274
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVL 86
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+
Sbjct: 232 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVI 274
>gi|62122587|dbj|BAD93255.1| RXRB [Oryzias latipes]
Length = 427
Score = 39.7 bits (91), Expect = 0.23, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 365 LETYCKHKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 408
>gi|444705543|gb|ELW46965.1| Nuclear receptor subfamily 2 group C member 2 [Tupaia chinensis]
Length = 606
Score = 39.7 bits (91), Expect = 0.24, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 46 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTI 105
Q Q+ L Y+ Y R +I + LP L+ + S + EELFF +IG N +I I
Sbjct: 528 QEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIG-NVSIDSII 586
Query: 106 WHMYK 110
++ K
Sbjct: 587 PYILK 591
>gi|74178793|dbj|BAE34041.1| unnamed protein product [Mus musculus]
Length = 596
Score = 39.7 bits (91), Expect = 0.24, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 37 TGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
TG+ Q Q+ L Y+ Y R + + LP L+ + S + EELFF +IG
Sbjct: 509 TGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARTLVRLPALRLMSSNITEELFFTGLIG 568
Query: 97 HNTTIKKTIWHMYK 110
N +I I ++ K
Sbjct: 569 -NVSIDSIIPYILK 581
>gi|18157523|dbj|BAB83838.1| RXRB [Oryzias latipes]
Length = 427
Score = 39.7 bits (91), Expect = 0.24, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 365 LETYCKHKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 408
>gi|44964709|gb|AAS49526.1| nuclear receptor subfamily 2 group F number 1 [Protopterus dolloi]
Length = 273
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVL 86
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+
Sbjct: 231 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVI 273
>gi|307194605|gb|EFN76894.1| Retinoic acid receptor RXR-alpha-A [Harpegnathos saltator]
Length = 389
Score = 39.7 bits (91), Expect = 0.25, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L +Y P+ P RF K+ L LP ++SI LE LFF +IG
Sbjct: 328 LEEYTRMSRPNDPGRFAKLLLRLPSIRSIGLKCLEHLFFFKVIG 371
>gi|432875136|ref|XP_004072692.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like,
partial [Oryzias latipes]
Length = 330
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 62 PSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 108
P QP+RF K+ L LP L+++ S V+E+LFF ++G T I+ I M
Sbjct: 270 PHQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIETLIRDM 315
>gi|122892563|gb|ABM67333.1| NR2E1 [Hylobates klossii]
Length = 51
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 63 SQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 112
+QP RF K+ L+LP L+SI +EE+FF+ IG N I + + MYK++
Sbjct: 1 TQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIG-NVPITRLLSDMYKSS 49
>gi|300796794|ref|NP_001178990.1| nuclear receptor subfamily 2 group C member 2 [Bos taurus]
gi|296474669|tpg|DAA16784.1| TPA: nuclear receptor subfamily 2 group C member 2-like [Bos
taurus]
gi|440903574|gb|ELR54213.1| Nuclear receptor subfamily 2 group C member 2 [Bos grunniens mutus]
Length = 611
Score = 39.3 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 46 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTI 105
Q Q+ L Y+ Y R +I + LP L+ + S + EELFF +IG N +I I
Sbjct: 533 QEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSSITEELFFTGLIG-NVSIDSII 591
Query: 106 WHMYK 110
++ K
Sbjct: 592 PYILK 596
>gi|281347589|gb|EFB23173.1| hypothetical protein PANDA_010183 [Ailuropoda melanoleuca]
Length = 572
Score = 39.3 bits (90), Expect = 0.28, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 46 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTI 105
Q Q+ L Y+ Y R +I + LP L+ + S + EELFF +IG N +I I
Sbjct: 494 QEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIG-NVSIDSII 552
Query: 106 WHMYK 110
++ K
Sbjct: 553 PYILK 557
>gi|170065210|ref|XP_001867845.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167882297|gb|EDS45680.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 505
Score = 39.3 bits (90), Expect = 0.28, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q Q+ L ++ T +P Q RF ++ L+LP L+ I S +E ++F+ IG NT ++K
Sbjct: 440 LQDQAQVMLAQHSRTQFPGQIARFGRLLLMLPLLRIINSHKIESIYFQKTIG-NTPMEKV 498
Query: 105 IWHMYKN 111
+ MYKN
Sbjct: 499 LCDMYKN 505
>gi|16797886|gb|AAL29201.1|AF323688_1 nuclear receptor AmNR8 [Acropora millepora]
Length = 379
Score = 39.3 bits (90), Expect = 0.28, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L +Y+ +P+ P RF KI L LP + + EELFF +IG
Sbjct: 318 LKQYVENRHPNTPERFAKILLRLPATRMLTKRAAEELFFSPLIG 361
>gi|313230320|emb|CBY08024.1| unnamed protein product [Oikopleura dioica]
Length = 420
Score = 39.3 bits (90), Expect = 0.29, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 25/50 (50%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIK 102
L Y YP QP RF K+ L LP L+SI LE +F +G I+
Sbjct: 365 LEAYSKQKYPEQPGRFAKLLLRLPALRSIGLKCLESMFLFKTVGDTPQIE 414
>gi|301771740|ref|XP_002921290.1| PREDICTED: nuclear receptor subfamily 2 group C member 2-like
[Ailuropoda melanoleuca]
Length = 611
Score = 39.3 bits (90), Expect = 0.29, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 46 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTI 105
Q Q+ L Y+ Y R +I + LP L+ + S + EELFF +IG N +I I
Sbjct: 533 QEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIG-NVSIDSII 591
Query: 106 WHMYK 110
++ K
Sbjct: 592 PYILK 596
>gi|34785966|gb|AAH58069.1| Nr0b2a protein [Danio rerio]
Length = 265
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%)
Query: 38 GSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 97
S F +Q Q L + + +YP RF +I L LKSI ++ ELFFR +IG
Sbjct: 192 ASLFVEGLQYEAQQALKEVLVPLYPQDGGRFARILLTASTLKSITPSLITELFFRPVIGD 251
>gi|426249719|ref|XP_004018597.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 [Ovis
aries]
Length = 596
Score = 39.3 bits (90), Expect = 0.30, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 46 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTI 105
Q Q+ L Y+ Y R +I + LP L+ + S + EELFF +IG N +I I
Sbjct: 518 QEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSSITEELFFTGLIG-NVSIDSII 576
Query: 106 WHMYK 110
++ K
Sbjct: 577 PYILK 581
>gi|410951774|ref|XP_003982568.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Felis catus]
Length = 596
Score = 39.3 bits (90), Expect = 0.31, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 46 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTI 105
Q Q+ L Y+ Y R +I + LP L+ + S + EELFF +IG N +I I
Sbjct: 518 QEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIG-NVSIDSII 576
Query: 106 WHMYK 110
++ K
Sbjct: 577 PYILK 581
>gi|345786121|ref|XP_541755.3| PREDICTED: nuclear receptor subfamily 2 group C member 2 [Canis
lupus familiaris]
Length = 596
Score = 39.3 bits (90), Expect = 0.31, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 46 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTI 105
Q Q+ L Y+ Y R +I + LP L+ + S + EELFF +IG N +I I
Sbjct: 518 QEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIG-NVSIDSII 576
Query: 106 WHMYK 110
++ K
Sbjct: 577 PYILK 581
>gi|20589475|ref|NP_571261.1| nuclear receptor subfamily 2 group F member 5 [Danio rerio]
gi|6094378|sp|Q06726.1|NR2F5_DANRE RecName: Full=Nuclear receptor subfamily 2 group F member 5;
AltName: Full=Steroid receptor homolog SVP 46
gi|296421|emb|CAA49781.1| spv 46 [Danio rerio]
gi|190339654|gb|AAI62999.1| Nr2f5 protein [Danio rerio]
gi|190340229|gb|AAI62963.1| Nuclear receptor subfamily 2, group F, member 5 [Danio rerio]
Length = 403
Score = 39.3 bits (90), Expect = 0.31, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 35/53 (66%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
+IQ +Q L +Y+ YP+QP RF ++ L LP L+ + S V+E+LFF ++G
Sbjct: 311 SIQEKSQCALEEYVRNQYPNQPNRFGRLLLRLPSLRIVSSPVIEQLFFVRLVG 363
>gi|410951776|ref|XP_003982569.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Felis catus]
Length = 615
Score = 39.3 bits (90), Expect = 0.31, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 46 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTI 105
Q Q+ L Y+ Y R +I + LP L+ + S + EELFF +IG N +I I
Sbjct: 537 QEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIG-NVSIDSII 595
Query: 106 WHMYK 110
++ K
Sbjct: 596 PYILK 600
>gi|126336217|ref|XP_001366331.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Monodelphis domestica]
Length = 596
Score = 39.3 bits (90), Expect = 0.31, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 46 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTI 105
Q Q+ L Y+ Y R +I + LP L+ + S + EELFF +IG N +I I
Sbjct: 518 QEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSSITEELFFTGLIG-NVSIDSII 576
Query: 106 WHMYK 110
++ K
Sbjct: 577 PYILK 581
>gi|224587886|gb|ACN58733.1| Nuclear receptor subfamily 2 group F member 5 [Salmo salar]
Length = 178
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 13/102 (12%)
Query: 1 MFQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGS------KFTAAIQGHTQIFLN 54
+FQ ++ L++ L++ A S S V F + + +IQ +Q L
Sbjct: 44 VFQEQVEKLKV-------LQVDTAEYSCLKSIVLFTSDAMGLSDVAHVESIQEKSQCALE 96
Query: 55 KYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
+Y+ YPSQP RF ++ L LP L+ + S V+E+LFF ++G
Sbjct: 97 EYVRNQYPSQPNRFGRLLLRLPSLRIVSSPVIEQLFFVRLVG 138
>gi|130497366|ref|NP_001076416.1| nuclear receptor subfamily 0 group B member 1 [Danio rerio]
gi|126632103|gb|AAI33943.1| LOC100001692 protein [Danio rerio]
Length = 264
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 41 FTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
+ A+Q LN+Y+ ++ RF K+ L L L+SI + V+ LFF+ +IG
Sbjct: 194 YIQALQSEANQALNEYVKMIHRGDSARFAKLFLALSMLRSINANVVAGLFFKPVIG 249
>gi|344275981|ref|XP_003409789.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 [Loxodonta
africana]
Length = 616
Score = 39.3 bits (90), Expect = 0.32, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 46 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTI 105
Q Q+ L Y+ Y R +I + LP L+ + S + EELFF +IG N +I I
Sbjct: 538 QEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIG-NVSIDSII 596
Query: 106 WHMYK 110
++ K
Sbjct: 597 PYILK 601
>gi|149728246|ref|XP_001491100.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Equus caballus]
Length = 611
Score = 39.3 bits (90), Expect = 0.32, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 46 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTI 105
Q Q+ L Y+ Y R +I + LP L+ + S + EELFF +IG N +I I
Sbjct: 533 QEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIG-NVSIDSII 591
Query: 106 WHMYK 110
++ K
Sbjct: 592 PYILK 596
>gi|371875292|ref|NP_001243120.1| nuclear receptor subfamily 0 group B member 2 [Danio rerio]
Length = 248
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%)
Query: 38 GSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 97
S F +Q Q L + + +YP RF +I L LKSI ++ ELFFR +IG
Sbjct: 175 ASLFVEGLQYEAQQALKEVLVPLYPQDGGRFARILLTASTLKSITPSLITELFFRPVIGD 234
>gi|355707885|gb|AES03095.1| nuclear receptor subfamily 2, group C, member 2 [Mustela putorius
furo]
Length = 609
Score = 39.3 bits (90), Expect = 0.32, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 46 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTI 105
Q Q+ L Y+ Y R +I + LP L+ + S + EELFF +IG N +I I
Sbjct: 531 QEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIG-NVSIDSII 589
Query: 106 WHMYK 110
++ K
Sbjct: 590 PYILK 594
>gi|355786362|gb|EHH66545.1| hypothetical protein EGM_03558, partial [Macaca fascicularis]
Length = 572
Score = 39.3 bits (90), Expect = 0.33, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 46 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTI 105
Q Q+ L Y+ Y R +I + LP L+ + S + EELFF +IG N +I I
Sbjct: 494 QEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIG-NVSIDSII 552
Query: 106 WHMYK 110
++ K
Sbjct: 553 PYILK 557
>gi|149728243|ref|XP_001491080.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Equus caballus]
Length = 596
Score = 39.3 bits (90), Expect = 0.33, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 46 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTI 105
Q Q+ L Y+ Y R +I + LP L+ + S + EELFF +IG N +I I
Sbjct: 518 QEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIG-NVSIDSII 576
Query: 106 WHMYK 110
++ K
Sbjct: 577 PYILK 581
>gi|241707738|ref|XP_002403220.1| zinc finger, C4 type, putative [Ixodes scapularis]
gi|215505031|gb|EEC14525.1| zinc finger, C4 type, putative [Ixodes scapularis]
Length = 299
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 63 SQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 112
P RF K+ L LP L+++ + +E+LFFR IG I++ + MYK+
Sbjct: 249 CMPFRFGKLLLTLPCLRTVSATAIEDLFFRKTIG-AIPIERLLCDMYKSG 297
>gi|395847192|ref|XP_003796267.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Otolemur garnettii]
gi|395847194|ref|XP_003796268.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Otolemur garnettii]
Length = 596
Score = 39.3 bits (90), Expect = 0.34, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 46 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTI 105
Q Q+ L Y+ Y R +I + LP L+ + S + EELFF +IG N +I I
Sbjct: 518 QEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIG-NVSIDSII 576
Query: 106 WHMYK 110
++ K
Sbjct: 577 PYILK 581
>gi|307203729|gb|EFN82689.1| Photoreceptor-specific nuclear receptor [Harpegnathos saltator]
Length = 547
Score = 39.3 bits (90), Expect = 0.34, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q Q L Y + YP QP R ++ +++ L+ + S +E LFF IG I +
Sbjct: 477 LQDQAQRILVDYTRSRYPQQPGRIGRLMILVGYLRCVSSKTVERLFFHETIGE-IPISRL 535
Query: 105 IWHMYK 110
+ MY+
Sbjct: 536 LVDMYQ 541
>gi|351702441|gb|EHB05360.1| Nuclear receptor subfamily 2 group F member 6 [Heterocephalus
glaber]
Length = 180
Score = 38.9 bits (89), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y+ YP+QP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 102 SLQEKAQVALTEYVRAQYPTQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIET 160
Query: 104 TIWHM 108
I M
Sbjct: 161 LIRDM 165
>gi|291393486|ref|XP_002713082.1| PREDICTED: nuclear receptor subfamily 2, group C, member 2
[Oryctolagus cuniculus]
Length = 596
Score = 38.9 bits (89), Expect = 0.34, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 37 TGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
+G+ Q Q+ L Y+ Y R +I + LP L+ + + + EELFF +IG
Sbjct: 509 SGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSANITEELFFTGLIG 568
Query: 97 HNTTIKKTIWHMYK 110
N +I I ++ K
Sbjct: 569 -NVSIDSIIPYILK 581
>gi|124111302|gb|ABM92051.1| NR2E1 [Pan troglodytes]
Length = 50
Score = 38.9 bits (89), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 64 QPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 112
QP RF K+ L+LP L+SI +EE+FF+ IG N I + + MYK++
Sbjct: 1 QPCRFGKLLLLLPALRSISPSTIEEVFFKKTIG-NVPITRLLSDMYKSS 48
>gi|395516672|ref|XP_003762511.1| PREDICTED: nuclear receptor subfamily 2 group C member 2
[Sarcophilus harrisii]
Length = 629
Score = 38.9 bits (89), Expect = 0.35, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 46 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTI 105
Q Q+ L Y+ Y R +I + LP L+ + S + EELFF +IG N +I I
Sbjct: 551 QEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSSITEELFFTGLIG-NVSIDSII 609
Query: 106 WHMYK 110
++ K
Sbjct: 610 PYILK 614
>gi|269854075|gb|ACZ51263.1| Dax1 [Cynoglossus semilaevis]
Length = 298
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 109
L ++I ++ TRF K+ + L L+SI LV+ +LFFR +IG I++ + M+
Sbjct: 240 LKEHIRLIHREDTTRFAKLLIALSMLRSISPLVVAQLFFRPVIG-TVNIEEVLMEMF 295
>gi|114585547|ref|XP_001158643.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 6
[Pan troglodytes]
gi|410222744|gb|JAA08591.1| nuclear receptor subfamily 2, group C, member 2 [Pan troglodytes]
gi|410261218|gb|JAA18575.1| nuclear receptor subfamily 2, group C, member 2 [Pan troglodytes]
gi|410287872|gb|JAA22536.1| nuclear receptor subfamily 2, group C, member 2 [Pan troglodytes]
gi|410349801|gb|JAA41504.1| nuclear receptor subfamily 2, group C, member 2 [Pan troglodytes]
Length = 615
Score = 38.9 bits (89), Expect = 0.35, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 46 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTI 105
Q Q+ L Y+ Y R +I + LP L+ + S + EELFF +IG N +I I
Sbjct: 537 QEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIG-NVSIDSII 595
Query: 106 WHMYK 110
++ K
Sbjct: 596 PYILK 600
>gi|114585553|ref|XP_001158452.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 3
[Pan troglodytes]
gi|296225930|ref|XP_002758705.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Callithrix jacchus]
gi|297670033|ref|XP_002813184.1| PREDICTED: uncharacterized protein LOC100448384 isoform 1 [Pongo
abelii]
gi|390475359|ref|XP_003734943.1| PREDICTED: nuclear receptor subfamily 2 group C member 2
[Callithrix jacchus]
gi|397511831|ref|XP_003826268.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Pan paniscus]
gi|402887045|ref|XP_003906916.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Papio anubis]
gi|403268295|ref|XP_003926213.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Saimiri boliviensis boliviensis]
gi|410036591|ref|XP_003950084.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 [Pan
troglodytes]
gi|1351190|sp|P49116.1|NR2C2_HUMAN RecName: Full=Nuclear receptor subfamily 2 group C member 2;
AltName: Full=Orphan nuclear receptor TAK1; AltName:
Full=Orphan nuclear receptor TR4; AltName:
Full=Testicular receptor 4
gi|758382|gb|AAC50118.1| hTAK1 [Homo sapiens]
gi|119584619|gb|EAW64215.1| nuclear receptor subfamily 2, group C, member 2, isoform CRA_b
[Homo sapiens]
gi|158254612|dbj|BAF83279.1| unnamed protein product [Homo sapiens]
Length = 596
Score = 38.9 bits (89), Expect = 0.36, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 46 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTI 105
Q Q+ L Y+ Y R +I + LP L+ + S + EELFF +IG N +I I
Sbjct: 518 QEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIG-NVSIDSII 576
Query: 106 WHMYK 110
++ K
Sbjct: 577 PYILK 581
>gi|348501001|ref|XP_003438059.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Oreochromis niloticus]
Length = 410
Score = 38.9 bits (89), Expect = 0.36, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y YPSQP RF ++ L LP L+++P+ ++ +LFF +IG T I+
Sbjct: 327 SLQEKAQVALTEYERMQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLIG-KTPIET 385
Query: 104 TIWHM 108
I M
Sbjct: 386 LIRDM 390
>gi|36950991|ref|NP_003289.2| nuclear receptor subfamily 2 group C member 2 [Homo sapiens]
gi|296225932|ref|XP_002758706.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Callithrix jacchus]
gi|119584617|gb|EAW64213.1| nuclear receptor subfamily 2, group C, member 2, isoform CRA_a
[Homo sapiens]
gi|119584618|gb|EAW64214.1| nuclear receptor subfamily 2, group C, member 2, isoform CRA_a
[Homo sapiens]
gi|168278006|dbj|BAG10981.1| orphan nuclear receptor TR4 [synthetic construct]
gi|325588346|gb|ADZ31973.1| testicular nuclear receptor 4 [Homo sapiens]
gi|355564520|gb|EHH21020.1| hypothetical protein EGK_03993 [Macaca mulatta]
gi|380816092|gb|AFE79920.1| nuclear receptor subfamily 2 group C member 2 [Macaca mulatta]
gi|383421225|gb|AFH33826.1| nuclear receptor subfamily 2 group C member 2 [Macaca mulatta]
Length = 615
Score = 38.9 bits (89), Expect = 0.36, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 46 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTI 105
Q Q+ L Y+ Y R +I + LP L+ + S + EELFF +IG N +I I
Sbjct: 537 QEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIG-NVSIDSII 595
Query: 106 WHMYK 110
++ K
Sbjct: 596 PYILK 600
>gi|417411925|gb|JAA52381.1| Putative nuclear receptor subfamily protein 2 group c member 2,
partial [Desmodus rotundus]
Length = 610
Score = 38.9 bits (89), Expect = 0.36, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 46 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTI 105
Q Q+ L Y+ Y R +I + LP L+ + S + EELFF +IG N +I I
Sbjct: 532 QEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIG-NVSIDSII 590
Query: 106 WHMYK 110
++ K
Sbjct: 591 PYILK 595
>gi|297263121|ref|XP_001091445.2| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Macaca mulatta]
Length = 596
Score = 38.9 bits (89), Expect = 0.36, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 46 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTI 105
Q Q+ L Y+ Y R +I + LP L+ + S + EELFF +IG N +I I
Sbjct: 518 QEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIG-NVSIDSII 576
Query: 106 WHMYK 110
++ K
Sbjct: 577 PYILK 581
>gi|158302672|dbj|BAF85823.1| ultraspiracle [Liocheles australasiae]
Length = 410
Score = 38.9 bits (89), Expect = 0.36, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y Y QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 350 LEDYCRQNYFDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 393
>gi|538261|gb|AAA21474.1| TR4 orphan receptor [Homo sapiens]
Length = 615
Score = 38.9 bits (89), Expect = 0.37, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 46 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTI 105
Q Q+ L Y+ Y R +I + LP L+ + S + EELFF +IG N +I I
Sbjct: 537 QEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIG-NVSIDSII 595
Query: 106 WHMYK 110
++ K
Sbjct: 596 PYILK 600
>gi|216409724|dbj|BAH02299.1| nuclear receptor subfamily 2, group C, member 2 [Homo sapiens]
Length = 596
Score = 38.9 bits (89), Expect = 0.37, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 46 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTI 105
Q Q+ L Y+ Y R +I + LP L+ + S + EELFF +IG N +I I
Sbjct: 518 QEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIG-NVSIDSII 576
Query: 106 WHMYK 110
++ K
Sbjct: 577 PYILK 581
>gi|195999876|ref|XP_002109806.1| hypothetical protein TRIADDRAFT_21656 [Trichoplax adhaerens]
gi|190587930|gb|EDV27972.1| hypothetical protein TRIADDRAFT_21656 [Trichoplax adhaerens]
Length = 352
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%)
Query: 33 VRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 92
VR + IQ + Q L +++ + YP QP+RF + L L L+SI S V+EE+FF
Sbjct: 271 VRGLVNPNYVEYIQENIQCALKQHVKSQYPDQPSRFGYLLLRLLMLRSISSKVIEEIFFT 330
Query: 93 NII 95
+++
Sbjct: 331 SVL 333
>gi|20663783|pdb|1H9U|A Chain A, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
gi|20663784|pdb|1H9U|B Chain B, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
gi|20663785|pdb|1H9U|C Chain C, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
gi|20663786|pdb|1H9U|D Chain D, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
Length = 224
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 173 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 216
>gi|432110921|gb|ELK34395.1| Nuclear receptor subfamily 2 group C member 2 [Myotis davidii]
Length = 596
Score = 38.9 bits (89), Expect = 0.38, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 46 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTI 105
Q Q+ L Y+ Y R +I + LP L+ + S + EELFF +IG N +I I
Sbjct: 518 QEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIG-NVSIDSII 576
Query: 106 WHMYK 110
++ K
Sbjct: 577 PYILK 581
>gi|1144348|gb|AAC18408.1| TR4, partial [Mus musculus]
Length = 608
Score = 38.9 bits (89), Expect = 0.38, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 46 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTI 105
Q Q+ L Y+ Y R +I + LP L+ + S + EELFF +IG N +I I
Sbjct: 530 QEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIG-NVSIDSII 588
Query: 106 WHMYK 110
++ K
Sbjct: 589 PYILK 593
>gi|395518780|ref|XP_003763535.1| PREDICTED: nuclear receptor subfamily 0 group B member 1-like
[Sarcophilus harrisii]
Length = 305
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 40 KFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
++ +Q Q LN++I ++ RF K+ + L L+SI + V+ ELFFR IIG
Sbjct: 233 QYIQGLQREAQQALNEHIRMLHRGHQARFAKLNVALSLLRSINANVIAELFFRPIIG 289
>gi|146186460|gb|ABQ09282.1| retinoid X receptor beta 1 [Oryzias latipes]
Length = 194
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 142 LETYCKHKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 185
>gi|441665232|ref|XP_003265071.2| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
C member 2 [Nomascus leucogenys]
Length = 648
Score = 38.9 bits (89), Expect = 0.39, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 46 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTI 105
Q Q+ L Y+ Y R +I + LP L+ + S + EELFF +IG N +I I
Sbjct: 570 QEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIG-NVSIDSII 628
Query: 106 WHMYK 110
++ K
Sbjct: 629 PYILK 633
>gi|397511829|ref|XP_003826267.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Pan paniscus]
Length = 648
Score = 38.9 bits (89), Expect = 0.39, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 46 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTI 105
Q Q+ L Y+ Y R +I + LP L+ + S + EELFF +IG N +I I
Sbjct: 570 QEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIG-NVSIDSII 628
Query: 106 WHMYK 110
++ K
Sbjct: 629 PYILK 633
>gi|431916906|gb|ELK16662.1| Nuclear receptor subfamily 2 group C member 2 [Pteropus alecto]
Length = 596
Score = 38.9 bits (89), Expect = 0.40, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 46 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTI 105
Q Q+ L Y+ Y R +I + LP L+ + S + EELFF +IG N +I I
Sbjct: 518 QEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIG-NVSIDSII 576
Query: 106 WHMYK 110
++ K
Sbjct: 577 PYILK 581
>gi|402887043|ref|XP_003906915.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Papio anubis]
gi|403268297|ref|XP_003926214.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Saimiri boliviensis boliviensis]
Length = 648
Score = 38.9 bits (89), Expect = 0.40, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 46 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTI 105
Q Q+ L Y+ Y R +I + LP L+ + S + EELFF +IG N +I I
Sbjct: 570 QEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIG-NVSIDSII 628
Query: 106 WHMYK 110
++ K
Sbjct: 629 PYILK 633
>gi|350591453|ref|XP_003132435.3| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Sus scrofa]
Length = 596
Score = 38.9 bits (89), Expect = 0.40, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 46 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTI 105
Q Q+ L Y+ Y R +I + LP L+ + S + EELFF +IG N +I I
Sbjct: 518 QEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIG-NVSIDSII 576
Query: 106 WHMYK 110
++ K
Sbjct: 577 PYILK 581
>gi|350591455|ref|XP_003483272.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Sus scrofa]
Length = 609
Score = 38.9 bits (89), Expect = 0.40, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 46 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTI 105
Q Q+ L Y+ Y R +I + LP L+ + S + EELFF +IG N +I I
Sbjct: 531 QEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIG-NVSIDSII 589
Query: 106 WHMYK 110
++ K
Sbjct: 590 PYILK 594
>gi|297263119|ref|XP_002798750.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Macaca mulatta]
Length = 648
Score = 38.9 bits (89), Expect = 0.40, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 46 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTI 105
Q Q+ L Y+ Y R +I + LP L+ + S + EELFF +IG N +I I
Sbjct: 570 QEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIG-NVSIDSII 628
Query: 106 WHMYK 110
++ K
Sbjct: 629 PYILK 633
>gi|47223192|emb|CAG11327.1| unnamed protein product [Tetraodon nigroviridis]
Length = 577
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 38 GSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 97
GS Q + L Y+ YP R +I LP L+ + S + EELFF +IG
Sbjct: 496 GSGQIEKFQEKALMELQDYVQKAYPDDTYRLTRILTRLPALRLMNSSITEELFFTGLIG- 554
Query: 98 NTTIKKTIWHMYK 110
N +I I ++ K
Sbjct: 555 NVSIDSIIPYILK 567
>gi|426339581|ref|XP_004033724.1| PREDICTED: nuclear receptor subfamily 2 group C member 2, partial
[Gorilla gorilla gorilla]
Length = 616
Score = 38.9 bits (89), Expect = 0.41, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 46 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTI 105
Q Q+ L Y+ Y R +I + LP L+ + S + EELFF +IG N +I I
Sbjct: 538 QEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIG-NVSIDSII 596
Query: 106 WHMYK 110
++ K
Sbjct: 597 PYILK 601
>gi|112820307|gb|ABI24015.1| Rxr2 [Oikopleura dioica]
Length = 300
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 23/44 (52%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE +F +G
Sbjct: 257 LEAYSKQKYPEQPGRFAKLLLRLPALRSIGLKCLESMFLFKTVG 300
>gi|348502671|ref|XP_003438891.1| PREDICTED: nuclear receptor subfamily 2 group C member 2
[Oreochromis niloticus]
Length = 630
Score = 38.9 bits (89), Expect = 0.43, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 110
L Y+ YP R +I LP L+ + S + EELFF +IG N +I I ++ K
Sbjct: 559 LQDYVQKTYPDDTYRLTRILTRLPALRLMNSSITEELFFTGLIG-NVSIDSIIPYILK 615
>gi|156389667|ref|XP_001635112.1| predicted protein [Nematostella vectensis]
gi|156222202|gb|EDO43049.1| predicted protein [Nematostella vectensis]
Length = 355
Score = 38.9 bits (89), Expect = 0.43, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 92
IQ H Q+ L + T +P+ P+RF K+ L + L S+ +E++ FR
Sbjct: 288 IQDHIQLLLAHHTMTKHPTHPSRFGKLLLSISPLHSLAEKPIEDVLFR 335
>gi|432866384|ref|XP_004070824.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
C member 2-like [Oryzias latipes]
Length = 609
Score = 38.9 bits (89), Expect = 0.43, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 110
L Y+ YP R +I LP L+ + S + EELFF +IG N +I I ++ K
Sbjct: 538 LQDYVQKTYPDDTYRLTRILTRLPALRLMNSSITEELFFTGLIG-NVSIDSIIPYILK 594
>gi|126325545|ref|XP_001362242.1| PREDICTED: nuclear receptor subfamily 0 group B member 1-like
[Monodelphis domestica]
Length = 293
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 40 KFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
++ +Q Q LN++I ++ RF K+ + L L+SI + V+ ELFFR IIG
Sbjct: 221 QYIQGLQREAQQALNEHIRMLHRGHQARFAKLNVALSLLRSIHANVIAELFFRPIIG 277
>gi|307168984|gb|EFN61863.1| Photoreceptor-specific nuclear receptor [Camponotus floridanus]
Length = 279
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q Q+ L + P+ P RF ++ L+LP L+ +P+ +E ++F IG NT ++K
Sbjct: 214 LQDQAQLMLGHHARAQQPNSPARFGRLLLLLPLLRMVPASRVELIYFHRTIG-NTPMEKV 272
Query: 105 IWHMYKN 111
+ MYKN
Sbjct: 273 LCDMYKN 279
>gi|156387534|ref|XP_001634258.1| predicted protein [Nematostella vectensis]
gi|156221339|gb|EDO42195.1| predicted protein [Nematostella vectensis]
Length = 344
Score = 38.5 bits (88), Expect = 0.50, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 97
L YI + YP +P+RF I L LP L+ + + + EE F + H
Sbjct: 282 LRDYIKSSYPEKPSRFAHILLKLPTLRDMATRMAEECLFAQSLLH 326
>gi|311772275|pdb|3P0U|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Human
Testicular Receptor 4
gi|311772276|pdb|3P0U|B Chain B, Crystal Structure Of The Ligand Binding Domain Of Human
Testicular Receptor 4
Length = 249
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 46 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTI 105
Q Q+ L Y+ Y R +I + LP L+ + S + EELFF +IG N +I I
Sbjct: 171 QEAAQMELQDYVQATYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIG-NVSIDSII 229
Query: 106 WHMYK 110
++ K
Sbjct: 230 PYILK 234
>gi|295656541|gb|ADG26733.1| COUP transcription factor 1 [Platynereis dumerilii]
Length = 302
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 35/48 (72%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFF 91
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+S+ + V+E+LFF
Sbjct: 252 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRSVSAQVIEQLFF 299
>gi|149412644|ref|XP_001506287.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Ornithorhynchus anatinus]
Length = 596
Score = 38.5 bits (88), Expect = 0.55, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 46 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTI 105
Q Q+ L Y+ Y R +I + LP L+ + S + EELFF +IG N I I
Sbjct: 518 QEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSSITEELFFTGLIG-NVPIDSII 576
Query: 106 WHMYK 110
++ K
Sbjct: 577 PYILK 581
>gi|301608183|ref|XP_002933661.1| PREDICTED: nuclear receptor subfamily 0 group B member 1-like
[Xenopus (Silurana) tropicalis]
Length = 278
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%)
Query: 40 KFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
++ +Q Q LN+++ ++ + TRF K+ ++L L+++ + + ELFFR IIG
Sbjct: 206 QYIQGLQHEAQQALNEHVKMIHRWEQTRFTKLIIVLSFLRTVNANAIAELFFRPIIG 262
>gi|451774918|gb|AGF50212.1| ultraspiracle protein [Polyrhachis vicina]
Length = 424
Score = 38.5 bits (88), Expect = 0.57, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 14/102 (13%)
Query: 1 MFQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTV 60
M +TEL LR + N ++R + + S +R K AA++ +T++
Sbjct: 324 MDRTELGCLRSIILFNP--DVRGLKSIQEVSMLR----EKIYAALEEYTRVSC------- 370
Query: 61 YPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIK 102
P P RF K+ L LP ++SI LE LFF ++G ++
Sbjct: 371 -PDDPGRFAKLLLRLPSIRSIGLKCLEHLFFFKLLGEERAVE 411
>gi|47216397|emb|CAG01948.1| unnamed protein product [Tetraodon nigroviridis]
Length = 426
Score = 38.5 bits (88), Expect = 0.58, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 350 SLQEKAQVALTEYERMQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIET 408
Query: 104 TIWHM 108
I M
Sbjct: 409 LIRDM 413
>gi|313767044|gb|ADR80691.1| nuclear receptor superfamily subfamily 0 group B member 1
[Epinephelus coioides]
Length = 296
Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 109
LN+++ ++ TRF K+ + L L++I V+ +LFFR +IG +I++ + M+
Sbjct: 238 LNEHVRLIHREDTTRFAKLLIALSMLRAISPPVVAQLFFRPVIG-TVSIEEVLMEMF 293
>gi|410924582|ref|XP_003975760.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Takifugu rubripes]
Length = 404
Score = 38.1 bits (87), Expect = 0.58, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 326 SLQEKAQVALTEYERMQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIET 384
Query: 104 TIWHM 108
I M
Sbjct: 385 LIRDM 389
>gi|399762431|gb|AFP50058.1| Dax1a [Monopterus albus]
Length = 293
Score = 38.1 bits (87), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 109
LN+++ ++ TRF K+ + L L++I V+ +LFFR +IG +I++ + M+
Sbjct: 235 LNEHVRLIHREDTTRFAKLLIALSMLRAISPPVVAQLFFRPVIG-TVSIEEVLMEMF 290
>gi|118788495|ref|XP_316782.3| AGAP000819-PA [Anopheles gambiae str. PEST]
gi|116126135|gb|EAA12047.4| AGAP000819-PA [Anopheles gambiae str. PEST]
Length = 436
Score = 38.1 bits (87), Expect = 0.61, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIK 102
A++ + L YI T P R+ + +LP L+++ S +EELFFR IG +K
Sbjct: 369 ALEESAKEALASYISTCRPGPSNRYRTLLQLLPALRNVSSYTIEELFFRRNIGPAPLLK 427
>gi|149471499|ref|XP_001514355.1| PREDICTED: nuclear receptor subfamily 0 group B member 2-like
[Ornithorhynchus anatinus]
Length = 262
Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 97
++Q Q L + + +P RF ++ L+ LKSIP ++ +LFFR +IG
Sbjct: 195 SLQCEAQRALREELLPRHPEDQGRFARVLLVASTLKSIPPALVRDLFFRPVIGD 248
>gi|410908455|ref|XP_003967706.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-A-like
[Takifugu rubripes]
Length = 601
Score = 38.1 bits (87), Expect = 0.65, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 110
L Y+ YP R K+ + LP L+ I + V EELFF +IG N I I ++ K
Sbjct: 531 LQDYVTRTYPEDCYRLSKLLVRLPALRLISANVTEELFFAGLIG-NVQIDSIIPYILK 587
>gi|432854604|ref|XP_004067983.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Oryzias latipes]
Length = 406
Score = 38.1 bits (87), Expect = 0.67, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 328 SLQEKAQVALTEYERLQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIET 386
Query: 104 TIWHM 108
I M
Sbjct: 387 LIRDM 391
>gi|410899971|ref|XP_003963470.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
C member 2-like [Takifugu rubripes]
Length = 629
Score = 38.1 bits (87), Expect = 0.68, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 38 GSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 97
GS Q + L Y+ YP R +I LP L+ + S + EELFF +IG
Sbjct: 543 GSGQIEKFQEKALMELQDYVQKTYPDDMYRLTRILTRLPALRLMNSSITEELFFTGLIG- 601
Query: 98 NTTIKKTIWHMYK 110
N +I I ++ K
Sbjct: 602 NVSIDSIIPYILK 614
>gi|340719095|ref|XP_003397992.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like isoform 2
[Bombus terrestris]
gi|350396164|ref|XP_003484463.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like isoform 2
[Bombus impatiens]
Length = 405
Score = 38.1 bits (87), Expect = 0.68, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 14/96 (14%)
Query: 1 MFQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTV 60
M +TEL LR + N E+R + + + +R K AA++G Y
Sbjct: 306 MDRTELGCLRSIILFNP--EVRGLKSIQEVTLLR----EKIYAALEG--------YCRVA 351
Query: 61 YPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
+P RF K+ L LP ++SI LE LFF +IG
Sbjct: 352 WPDDAGRFAKLLLRLPAIRSIGLKCLEYLFFFKMIG 387
>gi|299773487|gb|ADJ38818.1| orphan nuclear receptor Dax-1 [Salmo salar]
Length = 295
Score = 38.1 bits (87), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 109
LN+Y+ ++ TRF K+ + L L++I V+ +LFF+ IIG +++ + M+
Sbjct: 237 LNEYVKLIHRDDATRFAKLLIALAMLRAISPPVVAQLFFKPIIGA-VNMEEVLLEMF 292
>gi|312174936|emb|CBH51396.1| DAX-2 nuclear receptor subfamily 0, group B, member 1b
[Dicentrarchus labrax]
Length = 265
Score = 38.1 bits (87), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 1 MFQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTV 60
MFQ LRI +E + L+ +T R ++ A+Q + L +++ TV
Sbjct: 156 MFQVWCRGLRISVKEYAFLKGAILFTPVTELECR-----EYVQALQREAERALYEHVRTV 210
Query: 61 YPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 109
+ + RF +++ +L L+SI + LFFR + G N +I++ + M+
Sbjct: 211 HRGKAGRFGRLRAVLSALRSIEPDAVAGLFFRPVTGSN-SIEEHVLAMF 258
>gi|410929439|ref|XP_003978107.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Takifugu rubripes]
Length = 406
Score = 38.1 bits (87), Expect = 0.74, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 328 SLQEKAQVALTEYERIQYPSQPQRFGRLLLRLPALRAVPANLISQLFFMRLVG-KTPIET 386
Query: 104 TIWHM 108
I M
Sbjct: 387 LIRDM 391
>gi|432913184|ref|XP_004078947.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Oryzias latipes]
Length = 406
Score = 37.7 bits (86), Expect = 0.76, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 328 SLQEKAQVALTEYERMQYPSQPQRFGRLLLRLPALRAVPANLISQLFFMRLVG-KTPIET 386
Query: 104 TIWHM 108
I M
Sbjct: 387 LIRDM 391
>gi|260828845|ref|XP_002609373.1| hypothetical protein BRAFLDRAFT_236186 [Branchiostoma floridae]
gi|229294729|gb|EEN65383.1| hypothetical protein BRAFLDRAFT_236186 [Branchiostoma floridae]
Length = 336
Score = 37.7 bits (86), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 51 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 110
I L +YI + RF ++ L+LP L+ + + LEELFFR IG N I++ + M+K
Sbjct: 276 IMLGEYIASKNSEDKVRFGRLLLLLPALRGVRARGLEELFFRPTIG-NIPIERLLCDMFK 334
Query: 111 NA 112
++
Sbjct: 335 SS 336
>gi|327287768|ref|XP_003228600.1| PREDICTED: COUP transcription factor 2-like, partial [Anolis
carolinensis]
Length = 266
Score = 37.7 bits (86), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q +Q L +Y+ YPSQP+RF ++ L LP L+ + + V+E+LFF ++G T I+
Sbjct: 189 VQEKSQCALEEYVRNQYPSQPSRFGRLLLRLPSLRIVSAPVIEQLFFVRLVG-KTPIETL 247
Query: 105 IWHM 108
I M
Sbjct: 248 IRDM 251
>gi|77632652|gb|ABB00308.1| ultraspiracle protein [Scaptotrigona depilis]
Length = 427
Score = 37.7 bits (86), Expect = 0.83, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 14/96 (14%)
Query: 1 MFQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTV 60
M +TEL LR + N E+R + + + +R K AA++G Y
Sbjct: 328 MDRTELGCLRSIILFNP--EVRGLKSIQEVTLLR----EKIYAALEG--------YCRVA 373
Query: 61 YPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
+P RF K+ L LP ++SI LE LFF +IG
Sbjct: 374 WPDDAGRFAKLLLRLPAIRSIGLKCLEYLFFFKMIG 409
>gi|340719093|ref|XP_003397991.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like isoform 1
[Bombus terrestris]
gi|350396161|ref|XP_003484462.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like isoform 1
[Bombus impatiens]
Length = 427
Score = 37.7 bits (86), Expect = 0.91, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 14/96 (14%)
Query: 1 MFQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTV 60
M +TEL LR + N E+R + + + +R K AA++G Y
Sbjct: 328 MDRTELGCLRSIILFNP--EVRGLKSIQEVTLLR----EKIYAALEG--------YCRVA 373
Query: 61 YPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
+P RF K+ L LP ++SI LE LFF +IG
Sbjct: 374 WPDDAGRFAKLLLRLPAIRSIGLKCLEYLFFFKMIG 409
>gi|56608614|gb|AAW02952.1| ultraspiracle [Melipona scutellaris]
Length = 427
Score = 37.7 bits (86), Expect = 0.91, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 14/96 (14%)
Query: 1 MFQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTV 60
M +TEL LR + N E+R + + + +R K AA++G Y
Sbjct: 328 MDRTELGCLRSIILFNP--EVRGLKSIQEVTLLR----EKIYAALEG--------YCRVA 373
Query: 61 YPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
+P RF K+ L LP ++SI LE LFF +IG
Sbjct: 374 WPDDAGRFAKLLLRLPAIRSIGLKCLEYLFFFKMIG 409
>gi|307170858|gb|EFN62969.1| Photoreceptor-specific nuclear receptor [Camponotus floridanus]
Length = 195
Score = 37.7 bits (86), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q Q L Y + YP QP R ++ +++ L+ + S +E LFF IG I +
Sbjct: 125 LQDQAQRILVDYTRSRYPQQPGRIGRLMILVGYLRCVSSKTVERLFFHETIGE-IPISRL 183
Query: 105 IWHMYK 110
+ MY+
Sbjct: 184 LVDMYQ 189
>gi|221043908|dbj|BAH13631.1| unnamed protein product [Homo sapiens]
Length = 347
Score = 37.7 bits (86), Expect = 0.94, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 23/44 (52%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP +SI LE LFF +IG
Sbjct: 285 LETYCKQKYPEQQGRFAKLLLRLPAPRSIGLKCLEHLFFFKLIG 328
>gi|400270861|gb|AFP75253.1| nuclear receptor subfamily 2 group C member 2, partial [Tupaia
belangeri]
Length = 566
Score = 37.7 bits (86), Expect = 0.97, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 46 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 97
Q Q+ L Y+ Y R +I + LP L+ + S + EELFF +IG+
Sbjct: 513 QEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIGN 564
>gi|24710922|gb|AAN17672.1| orphan nuclear receptor Dax-1 [Oreochromis niloticus]
gi|82659433|gb|ABB88833.1| orphan nuclear receptor DAX1 [Oreochromis niloticus]
Length = 296
Score = 37.7 bits (86), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 109
LN+++ ++ TRF K+ + L L++I V+ +LFFR +IG I++ + M+
Sbjct: 238 LNEHVRLIHREDTTRFAKLLIALSMLRAISPPVVAQLFFRPVIG-TVNIEEVLMEMF 293
>gi|348528222|ref|XP_003451617.1| PREDICTED: nuclear receptor subfamily 0 group B member 1
[Oreochromis niloticus]
Length = 294
Score = 37.7 bits (86), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 109
LN+++ ++ TRF K+ + L L++I V+ +LFFR +IG I++ + M+
Sbjct: 236 LNEHVRLIHREDTTRFAKLLIALSMLRAISPPVVAQLFFRPVIG-TVNIEEVLMEMF 291
>gi|156376474|ref|XP_001630385.1| predicted protein [Nematostella vectensis]
gi|156217405|gb|EDO38322.1| predicted protein [Nematostella vectensis]
Length = 340
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 46 QGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTI 105
Q QI L YI + Q RF K+ L+LP L+ + + +EELFFR IG + I+ +
Sbjct: 275 QDQAQIMLGDYIKRQFAGQQVRFGKLLLMLPSLRLVRNKTIEELFFRQTIG-SVAIESLL 333
Query: 106 WHMYKNA 112
M+K++
Sbjct: 334 CDMFKSS 340
>gi|312174938|emb|CBH51397.1| SHP nuclear receptor subfamily 0, group B, member 2 [Dicentrarchus
labrax]
Length = 259
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 34/69 (49%)
Query: 41 FTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTT 100
F +Q Q L + + ++P RF ++ L L+SI ++ ELFFR +IG
Sbjct: 189 FVEGLQQEAQHALREVVQLLHPGDQERFARVLLTASMLQSITPSLISELFFRPVIGQADL 248
Query: 101 IKKTIWHMY 109
++ + ++
Sbjct: 249 LELLVDMLF 257
>gi|255522857|ref|NP_001157331.1| nuclear receptor subfamily 0 group B member 1 [Equus caballus]
Length = 471
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 40 KFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
K+ +Q TQ L ++I + TRF ++ L L+ I + V+ +LFFR IIG
Sbjct: 399 KYIQGLQWGTQQILTEHIRMTHRGHQTRFAELHSALFLLRFINANVIADLFFRPIIG 455
>gi|213512096|ref|NP_001134122.1| nuclear receptor subfamily 0 group B member 2 [Salmo salar]
gi|209730864|gb|ACI66301.1| Nuclear receptor subfamily 0 group B member 2 [Salmo salar]
Length = 256
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%)
Query: 33 VRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 92
V+ ++F +Q Q L + + ++P+ RF I L LK+I ++ ELFFR
Sbjct: 178 VKDLKAAQFVEDLQQEAQHALREVVQPLHPADLGRFAGILLAASTLKTITPNLITELFFR 237
Query: 93 NIIGH 97
+IG
Sbjct: 238 PVIGQ 242
>gi|403263620|ref|XP_003924120.1| PREDICTED: nuclear receptor subfamily 0 group B member 1 [Saimiri
boliviensis boliviensis]
Length = 470
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 40 KFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
K+ +Q TQ L++++ + Q RF ++ L L+ I + V+ ELFFR IIG
Sbjct: 398 KYIQGLQWGTQQILSEHVRMTHRGQHDRFIELNSALFLLRFINANVIAELFFRPIIG 454
>gi|296235195|ref|XP_002762806.1| PREDICTED: nuclear receptor subfamily 0 group B member 1-like
[Callithrix jacchus]
Length = 408
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 40 KFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
K+ +Q TQ L++++ + Q RF ++ L L+ I + V+ ELFFR IIG
Sbjct: 336 KYIQGLQWGTQQILSEHVRMTHRGQHDRFIELNSALFLLRFINANVIAELFFRPIIG 392
>gi|170058688|ref|XP_001865030.1| nuclear hormone receptor ftz-f1 [Culex quinquefasciatus]
gi|167877706|gb|EDS41089.1| nuclear hormone receptor ftz-f1 [Culex quinquefasciatus]
Length = 183
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%)
Query: 29 RGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEE 88
+G+ VR T K + Q L Y T YPS P +F K+ I+P + I S E
Sbjct: 99 KGADVRGITNRKTVIEGYENVQAALLDYTLTCYPSVPDKFAKLLSIIPEIHVIASRGEEH 158
Query: 89 LFFRNIIG 96
L+ ++ G
Sbjct: 159 LYIKHCAG 166
>gi|327285576|ref|XP_003227509.1| PREDICTED: nuclear receptor subfamily 0 group B member 2-like
[Anolis carolinensis]
Length = 254
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 38 GSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 97
S + ++Q Q L + + ++ RF ++ LI LKSIP +L +LFF+ IIG
Sbjct: 181 ASSYIESLQKEAQRALQEVLALLHLEDQGRFARVLLISSSLKSIPPSLLTDLFFQPIIG- 239
Query: 98 NTTIKKTIWHM 108
N I + + M
Sbjct: 240 NVDILELLSDM 250
>gi|2921396|gb|AAC04761.1| DAX-1 [Sus scrofa]
Length = 464
Score = 37.0 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 40 KFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
K+ +Q TQ L+++I + RF ++ L L+ I + VL ELFFR IIG
Sbjct: 392 KYIQGLQWGTQQILSEHIRMTHRGYQARFAELNSALFLLRFINANVLAELFFRPIIG 448
>gi|47523828|ref|NP_999552.1| nuclear receptor subfamily 0 group B member 1 [Sus scrofa]
gi|3023620|sp|P79386.2|NR0B1_PIG RecName: Full=Nuclear receptor subfamily 0 group B member 1;
AltName: Full=Nuclear receptor DAX-1
gi|2529255|gb|AAB81101.1| DAX-1 [Sus scrofa]
Length = 471
Score = 37.0 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 40 KFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
K+ +Q TQ L+++I + RF ++ L L+ I + VL ELFFR IIG
Sbjct: 399 KYIQGLQWGTQQILSEHIRMTHRGYQARFAELNSALFLLRFINANVLAELFFRPIIG 455
>gi|218683823|gb|ACL00866.1| orphan nuclear receptor Dax-1 [Kryptolebias marmoratus]
Length = 308
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 109
LN+++ ++ TRF K+ + L L++I V+ +LFFR +IG I++ + M+
Sbjct: 250 LNEHVRLIHHEDTTRFAKLLIALSMLRAISPPVVAQLFFRPVIG-TVNIEEVLMEMF 305
>gi|322787044|gb|EFZ13268.1| hypothetical protein SINV_11756 [Solenopsis invicta]
Length = 288
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q Q L Y + YP QP R ++ +++ L+ + S +E LFF IG I +
Sbjct: 218 LQDQAQRILVDYTRSRYPQQPGRIGRLMILVGYLRCVSSKTVERLFFHETIGE-IPISRL 276
Query: 105 IWHMYK 110
+ MY+
Sbjct: 277 LVDMYQ 282
>gi|227150229|gb|ACP19739.1| putative retinoid X receptor [Calanus finmarchicus]
Length = 405
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHN 98
L +Y + + ++ RF K+ L LP L+SI +E LFF IIG +
Sbjct: 343 LEEYTRSTHENETGRFAKLLLRLPALRSIGLKCMEHLFFFKIIGES 388
>gi|391334318|ref|XP_003741552.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Metaseiulus
occidentalis]
Length = 574
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 51 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFF 91
I L +Y YP Q +RF K+ L LP L+SI +E LFF
Sbjct: 512 IALEEYTRMSYPDQNSRFPKLLLRLPALRSIGLKCVENLFF 552
>gi|156330425|ref|XP_001619117.1| hypothetical protein NEMVEDRAFT_v1g152310 [Nematostella vectensis]
gi|156201647|gb|EDO27017.1| predicted protein [Nematostella vectensis]
Length = 261
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 97
L YI + YP +P+RF I L LP L+ + + + EE F + H
Sbjct: 199 LRDYIKSSYPEKPSRFAHILLKLPTLRDMATRMAEECLFAQSLLH 243
>gi|241647785|ref|XP_002409993.1| photoreceptor-specific nuclear receptor, putative [Ixodes
scapularis]
gi|215501485|gb|EEC10979.1| photoreceptor-specific nuclear receptor, putative [Ixodes
scapularis]
Length = 342
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
Query: 35 FKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPT-------RFCKIQLILPRLKSIPSLVLE 87
FK S+ + + G + I +Y + RF ++ L+LP L+ +P+ +E
Sbjct: 260 FKAASRVSTKLLGSPRPLSVHRISLLYRTATNAGVGVYRRFGRLLLMLPSLRYVPAERVE 319
Query: 88 ELFFRNIIGHNTTIKKTIWHMYK 110
L+F+ IG NT ++K + M+K
Sbjct: 320 ALYFQRTIG-NTPMEKLLCDMFK 341
>gi|318037481|ref|NP_001187723.1| nuclear receptor subfamily 0 group b member 2 [Ictalurus punctatus]
gi|308323803|gb|ADO29037.1| nuclear receptor subfamily 0 group b member 2 [Ictalurus punctatus]
Length = 268
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%)
Query: 38 GSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 97
K +Q Q L++ IH V+P+ +R + L L ++ + ELFFR +IG
Sbjct: 192 NCKLIEGLQMEAQQLLHQVIHKVHPNDHSRLTSVLLTASSLHTVTQNFVTELFFRRVIGQ 251
Query: 98 NTTIK 102
++
Sbjct: 252 TDLLE 256
>gi|209522455|ref|ZP_03271055.1| FHA domain containing protein [Burkholderia sp. H160]
gi|209497107|gb|EDZ97362.1| FHA domain containing protein [Burkholderia sp. H160]
Length = 213
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 2 FQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLN----KYI 57
+ E +RI +E ++L +R+ Y SR+ + +RF++G+ + + + FLN K +
Sbjct: 115 YAIEKPNVRIGADEANDLIVRDYYVSRKHANIRFESGTLYLSDLGSSNGTFLNGARVKRV 174
Query: 58 HTVYPSQPTRF 68
T+ P RF
Sbjct: 175 MTLSPGDQIRF 185
>gi|126635937|gb|ABO21861.1| Dax-1 [Acanthopagrus schlegelii]
Length = 287
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 109
LN+++ ++ TRF K+ + L L++I V+ +LFFR +IG I++ + M+
Sbjct: 231 LNEHVRLIHREDTTRFAKLLIALSMLRAISPPVVAQLFFRPVIGA-VNIEEVLMEMF 286
>gi|383859045|ref|XP_003705008.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Megachile rotundata]
Length = 442
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q Q L Y + Y QP R + ++ LKS+ S +E LFF +G I +
Sbjct: 372 LQDQAQCILGDYTTSRYLRQPGRSGTLMYLVGYLKSVSSKTVERLFFHETVGE-IPISRL 430
Query: 105 IWHMYKNAG 113
+ +MY+ G
Sbjct: 431 LVNMYQMEG 439
>gi|156551053|ref|XP_001605819.1| PREDICTED: retinoic acid receptor RXR isoform 1 [Nasonia
vitripennis]
Length = 414
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 51 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
+ L++Y P +P RF K+ L LP L+SI E LFF ++G
Sbjct: 351 VALDEYTRLHRPDEPGRFAKLLLRLPALRSIGLKCTEHLFFFRLLG 396
>gi|4337458|gb|AAD18132.1| retinoid X receptor beta [Sus scrofa domesticus]
Length = 187
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 23/43 (53%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNII 95
L Y YP Q RF K+ L LP L+SI LE LFF +I
Sbjct: 145 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLI 187
>gi|270008322|gb|EFA04770.1| hypothetical protein TcasGA2_TC030676 [Tribolium castaneum]
Length = 357
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
Query: 4 TELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPS 63
T LT+LR+ E++ L+ + S R +Q T + LN+Y +
Sbjct: 255 TRLTLLRVDHTEHACLKALVLFKSE----CRGLCEPSHVELLQDQTHVMLNEYCNQ--RQ 308
Query: 64 QPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
RF K+ L LP ++++ LEEL FR +G
Sbjct: 309 TKGRFGKLLLTLPAVQAVTRRGLEELIFRQTVG 341
>gi|380021453|ref|XP_003694579.1| PREDICTED: protein tailless-like [Apis florea]
Length = 400
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 67 RFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 112
RF K+ L+LP L+S+ + +EELFFR IG I++ I MYK A
Sbjct: 356 RFGKLLLLLPSLRSVSAHAIEELFFRRTIG-VIPIERIICDMYKAA 400
>gi|56090166|ref|NP_991120.1| nuclear receptor subfamily 2, group F, member 6 [Danio rerio]
gi|40807137|gb|AAH65330.1| Nuclear receptor subfamily 2, group F, member 6a [Danio rerio]
Length = 402
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y YP QP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 324 SLQEKAQVALTEYERMQYPGQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIET 382
Query: 104 TIWHM 108
I M
Sbjct: 383 LIRDM 387
>gi|345489439|ref|XP_003426139.1| PREDICTED: retinoic acid receptor RXR [Nasonia vitripennis]
Length = 400
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 51 IFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
+ L++Y P +P RF K+ L LP L+SI E LFF ++G
Sbjct: 337 VALDEYTRLHRPDEPGRFAKLLLRLPALRSIGLKCTEHLFFFRLLG 382
>gi|391332279|ref|XP_003740563.1| PREDICTED: nuclear hormone receptor FTZ-F1-like [Metaseiulus
occidentalis]
Length = 587
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 36/68 (52%)
Query: 33 VRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 92
VR + + Q T+ L +Y + YP+ +F ++ ILP +K++ S E L+F+
Sbjct: 506 VRMLSNPRLVTDAQEQTKQVLLEYCTSNYPNIADKFSQLMAILPEIKAMSSRGEEFLYFK 565
Query: 93 NIIGHNTT 100
++ G+ T
Sbjct: 566 HVNGNAPT 573
>gi|432907930|ref|XP_004077711.1| PREDICTED: nuclear receptor subfamily 0 group B member 2-like
[Oryzias latipes]
Length = 280
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 34/69 (49%)
Query: 41 FTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTT 100
F +Q Q L + + ++P + RF +I L L+ I ++ ELFFR +IG
Sbjct: 210 FVEGLQQEAQHALREVVQLLHPGREERFARILLTASMLQGITPTLVTELFFRPVIGQADL 269
Query: 101 IKKTIWHMY 109
++ + ++
Sbjct: 270 LELLVDMLF 278
>gi|146186444|gb|ABQ09274.1| orphan nuclear receptor Dax-1 [Oryzias latipes]
Length = 222
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 109
LN+++ V TRF K+ + L L++I V+ +LFFR +IG I++ + M+
Sbjct: 164 LNEHVRLVQREDTTRFAKLLIALSMLRTISPPVVAQLFFRPVIG-TVNIEEVLMEMF 219
>gi|189237797|ref|XP_973111.2| PREDICTED: similar to PNR-like [Tribolium castaneum]
Length = 426
Score = 36.2 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
Query: 4 TELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPS 63
T LT+LR+ E++ L+ + S R +Q T + LN+Y +
Sbjct: 324 TRLTLLRVDHTEHACLKALVLFKSE----CRGLCEPSHVELLQDQTHVMLNEYCNQ--RQ 377
Query: 64 QPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
RF K+ L LP ++++ LEEL FR +G
Sbjct: 378 TKGRFGKLLLTLPAVQAVTRRGLEELIFRQTVG 410
>gi|348515163|ref|XP_003445109.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Oreochromis niloticus]
Length = 407
Score = 36.2 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y YP+QP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 329 SLQEKAQVALTEYERLQYPNQPQRFGRLLLRLPALRAVPANLISQLFFMRLVG-KTPIET 387
Query: 104 TIWHM 108
I M
Sbjct: 388 LIRDM 392
>gi|380012603|ref|XP_003690369.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like [Apis florea]
Length = 440
Score = 36.2 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 14/96 (14%)
Query: 1 MFQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTV 60
M +TEL LR + N E+R + + + +R K A++G Y
Sbjct: 341 MDRTELGCLRSIILFNP--EVRGLKSIQEVTLLR----EKIYGALEG--------YCRVA 386
Query: 61 YPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
+P RF K+ L LP ++SI LE LFF +IG
Sbjct: 387 WPDDAGRFAKLLLRLPAIRSIGLKCLEYLFFFKMIG 422
>gi|443685615|gb|ELT89169.1| hypothetical protein CAPTEDRAFT_171557 [Capitella teleta]
Length = 437
Score = 36.2 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q Q+ L ++ P+ P RF ++ L+LP L+ PS +E +FFR IG NT ++K
Sbjct: 372 LQDQAQLMLFQHCRAQRPALPARFGRLLLMLPLLRLAPSSHIENIFFRRTIG-NTPMEKL 430
Query: 105 IWHMYKN 111
+ M+K+
Sbjct: 431 LCDMFKS 437
>gi|47217403|emb|CAG00763.1| unnamed protein product [Tetraodon nigroviridis]
Length = 432
Score = 36.2 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y YP QP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 354 SLQEKAQVALTEYERMQYPGQPQRFGRLLLRLPALRAVPANLISQLFFMRLVG-KTPIET 412
Query: 104 TIWHM 108
I M
Sbjct: 413 LIRDM 417
>gi|296207167|ref|XP_002750522.1| PREDICTED: nuclear receptor subfamily 0 group B member 2
[Callithrix jacchus]
Length = 257
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 97
+Q L + P+ R ++ L+ LKSIP+ +LE+LFFR IIG
Sbjct: 191 LQQEAHWALYDVLEPWCPAAQGRLARVLLMASTLKSIPTSLLEDLFFRPIIGD 243
>gi|160707939|ref|NP_001104259.1| orphan nuclear receptor Dax-1 [Oryzias latipes]
gi|154758877|dbj|BAF74811.1| orphan nuclear receptor Dax1 [Oryzias latipes]
Length = 287
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMY 109
LN+++ V TRF K+ + L L++I V+ +LFFR +IG I++ + M+
Sbjct: 229 LNEHVRLVQREDTTRFAKLLIALSMLRTISPPVVAQLFFRPVIG-TVNIEEVLMEMF 284
>gi|47086055|ref|NP_998404.1| nuclear receptor subfamily 2, group F, member 6b [Danio rerio]
gi|40807068|gb|AAH65332.1| Nuclear receptor subfamily 2, group F, member 6b [Danio rerio]
Length = 404
Score = 36.2 bits (82), Expect = 2.6, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y YP QP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 326 SLQEKAQVALTEYERMQYPGQPQRFGRLLLRLPALRAVPANLISQLFFMRLVG-KTPIET 384
Query: 104 TIWHM 108
I M
Sbjct: 385 LIRDM 389
>gi|58585210|ref|NP_001011634.1| ultraspiracle [Apis mellifera]
gi|8118613|gb|AAF73057.1|AF263459_1 ultraspiracle protein [Apis mellifera]
gi|30691980|gb|AAP33487.1| ultraspiracle protein [Apis mellifera]
Length = 427
Score = 36.2 bits (82), Expect = 2.6, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 14/96 (14%)
Query: 1 MFQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTV 60
M +TEL LR + N E+R + + + +R K A++G Y
Sbjct: 328 MDRTELGCLRSIILFNP--EVRGLKSIQEVTLLR----EKIYGALEG--------YCRVA 373
Query: 61 YPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
+P RF K+ L LP ++SI LE LFF +IG
Sbjct: 374 WPDDAGRFAKLLLRLPAIRSIGLKCLEYLFFFKMIG 409
>gi|340712645|ref|XP_003394866.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Bombus terrestris]
Length = 425
Score = 36.2 bits (82), Expect = 2.6, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 38 GSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 97
S+ +Q Q L Y + Y QP R + ++ RL SI ++E LFF IG
Sbjct: 348 ASESIKMLQDQAQCILGDYTKSRYQRQPGRSGTLMHVVGRLTSIFPKLVERLFFHETIGE 407
Query: 98 NTTIKKTIWHMYKNAG 113
I + + MY+ G
Sbjct: 408 -IPISRLLVDMYQMKG 422
>gi|305690676|gb|ADM64635.1| ultraspiracle protein [Bactrocera dorsalis]
Length = 453
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L+++ T +P +RF ++ L LP L+SI L+ LFF I+G
Sbjct: 393 LDEHCRTEHPGDDSRFAQLLLRLPALRSISLKCLDHLFFFRIMG 436
>gi|224151159|ref|XP_002199588.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Taeniopygia guttata]
Length = 318
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q Q+ L +Y +P+QP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 241 LQEKAQVALTEYERAQFPAQPQRFGRLLLRLPALRAVPAALISQLFFMRLVG-KTPIETL 299
Query: 105 IWHM 108
I M
Sbjct: 300 IRDM 303
>gi|195402633|ref|XP_002059909.1| GJ14974 [Drosophila virilis]
gi|194140775|gb|EDW57246.1| GJ14974 [Drosophila virilis]
Length = 577
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q + L+++ T + +Q RF ++ L+LP L+ I S +E +FF+ IG NT ++K
Sbjct: 512 LQDQAHVMLSQHTKTQFTAQIARFGRLLLMLPLLRMINSHKIESIFFQRTIG-NTPMEKV 570
Query: 105 IWHMYKN 111
+ MYKN
Sbjct: 571 LCDMYKN 577
>gi|291407288|ref|XP_002720050.1| PREDICTED: nuclear receptor subfamily 0, group B, member 1
[Oryctolagus cuniculus]
Length = 471
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 40 KFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
K+ +Q TQ L +++ + RF ++ L L+ I + V+ ELFFR IIG
Sbjct: 399 KYIQGLQWGTQQILTEHVRMTHRGHQARFAELNSALFLLRFINANVIAELFFRPIIG 455
>gi|72013357|ref|XP_784447.1| PREDICTED: retinoic acid receptor RXR-gamma-like
[Strongylocentrotus purpuratus]
Length = 448
Score = 36.2 bits (82), Expect = 2.8, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L KYI + +P++P R+ KI + LP L+ + + +E+ + G
Sbjct: 389 LQKYIASAFPNEPKRYGKILMRLPTLRKVSAKAMEQFMGLKLAG 432
>gi|221124181|ref|XP_002154441.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Hydra
magnipapillata]
Length = 438
Score = 35.8 bits (81), Expect = 2.9, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 40 KFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFR 92
++ +Q + Q L +Y+ +P P RF K+ L+LP L++I + L +LF +
Sbjct: 365 QYIENLQDYAQSMLGEYVRNTHPQTPARFGKLLLLLPSLRAIGAKTLIKLFLK 417
>gi|19310197|dbj|BAB85864.1| Dax-1 [Glandirana rugosa]
Length = 287
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%)
Query: 39 SKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
+++ +Q LN+++ + RF K+ ++L L+SI + + ELFFR IIG
Sbjct: 214 AQYIQGLQQEAHQALNEHVKMIQRWDNARFTKLIIVLSLLRSINANAISELFFRPIIG 271
>gi|223049445|gb|ACM80361.1| orphan nuclear receptor Dax1 [Oncorhynchus mykiss]
Length = 303
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 28/44 (63%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
LN+++ ++ TRF K+ + L L++I V+ +LFF+ +IG
Sbjct: 245 LNEHVQLIHRDDTTRFAKLLITLSMLRAISPAVVAQLFFKPVIG 288
>gi|170053585|ref|XP_001862743.1| tailless [Culex quinquefasciatus]
gi|167874052|gb|EDS37435.1| tailless [Culex quinquefasciatus]
Length = 397
Score = 35.8 bits (81), Expect = 2.9, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIK 102
L YI T P R+ + +LP L+++ + +EELFFR IG +K
Sbjct: 339 LASYIRTCRPGPIDRYRALLQLLPALRNVSTYTIEELFFRRNIGPAPLLK 388
>gi|156378253|ref|XP_001631058.1| predicted protein [Nematostella vectensis]
gi|156218091|gb|EDO38995.1| predicted protein [Nematostella vectensis]
Length = 378
Score = 35.8 bits (81), Expect = 3.2, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 45 IQGHTQIFLNKYIHTVYP-SQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
+Q + L YI + YP RF KI L LP L I +EELFF ++G
Sbjct: 306 LQEQSHCGLKSYIDSKYPIGNSGRFAKILLRLPSLHLIDRFDVEELFFAPLLG 358
>gi|75057170|sp|Q9BG94.1|NR0B1_CALJA RecName: Full=Nuclear receptor subfamily 0 group B member 1;
AltName: Full=Nuclear receptor DAX-1
gi|12698698|gb|AAK01646.1| DAX1 [Callithrix jacchus]
Length = 470
Score = 35.8 bits (81), Expect = 3.2, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 40 KFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
K+ +Q TQ L+++I + RF ++ L L+ I + V+ ELFFR IIG
Sbjct: 398 KYIQGLQWGTQQILSEHIRMTHRGHHDRFIELNSALFLLRFINANVIAELFFRPIIG 454
>gi|60892874|gb|AAX37292.1| nuclear receptor usp/RXR [Polistes fuscatus]
Length = 279
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 97
L +Y P+ RF K+ L LP ++SI LE LFF +IG
Sbjct: 218 LEEYTRVSCPNDSGRFAKLLLRLPSIRSIGLKCLEHLFFYKLIGD 262
>gi|6754886|ref|NP_035980.1| nuclear receptor subfamily 0 group B member 2 [Mus musculus]
gi|9978747|sp|Q62227.1|NR0B2_MOUSE RecName: Full=Nuclear receptor subfamily 0 group B member 2;
AltName: Full=Orphan nuclear receptor SHP; AltName:
Full=Small heterodimer partner
gi|1374949|gb|AAB59732.1| shp [Mus musculus]
gi|18043452|gb|AAH19540.1| Nuclear receptor subfamily 0, group B, member 2 [Mus musculus]
gi|33860557|gb|AAQ55057.1| nuclear receptor subfamily 0 group B member 2 [Mus musculus]
gi|33860559|gb|AAQ55058.1| nuclear receptor subfamily 0 group B member 2 [Mus musculus]
gi|148698113|gb|EDL30060.1| nuclear receptor subfamily 0, group B, member 2, isoform CRA_b [Mus
musculus]
Length = 260
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 38 GSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
S A +Q L + + YP+ R +I L+ LK+IP +L +LFFR I+G
Sbjct: 187 ASCHIAHLQQEAHWALCEVLEPWYPASQGRLARILLMASTLKNIPGTLLVDLFFRPIMG 245
>gi|299773485|gb|ADJ38817.1| orphan nuclear receptor Dax-1 [Salmo salar]
Length = 301
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 33 VRFKTGSKFTAAIQG---HTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEEL 89
V F +G ++ IQ LN+++ ++ TRF K+ + L L++I V+ +L
Sbjct: 220 VLFNSGLRYLHYIQSLRREAHQALNEHVKLIHRDDTTRFAKLLITLSMLRAISPPVVAQL 279
Query: 90 FFRNIIG 96
FF+ +IG
Sbjct: 280 FFKPVIG 286
>gi|322796395|gb|EFZ18932.1| hypothetical protein SINV_11057 [Solenopsis invicta]
Length = 59
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 52 FLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKN 111
L + P+ P RF ++ L+LP L+++P+ +E ++F IG NT ++K + MYKN
Sbjct: 1 MLGHHARAQQPNSPARFGRLLLLLPLLRTVPAARVELIYFHRTIG-NTPMEKVLCDMYKN 59
>gi|28630300|gb|AAN73342.1| nuclear receptor subfamily 2 group F [Petromyzon marinus]
Length = 283
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILP 76
++Q +Q L +Y+ + YP+QPTRF K+ L LP
Sbjct: 251 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLP 283
>gi|260834489|ref|XP_002612243.1| hypothetical protein BRAFLDRAFT_155937 [Branchiostoma floridae]
gi|229297618|gb|EEN68252.1| hypothetical protein BRAFLDRAFT_155937 [Branchiostoma floridae]
Length = 375
Score = 35.8 bits (81), Expect = 3.7, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 36/69 (52%)
Query: 43 AAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIK 102
A +Q TQ+ + +I P QP RF K+ L+L L+ + LE +FF + ++
Sbjct: 307 AVLQDQTQLSFSHHIEMHKPGQPFRFGKLLLLLSSLREVQRSSLESVFFTKTMTGGVSMD 366
Query: 103 KTIWHMYKN 111
+ + MYK+
Sbjct: 367 QLVLDMYKS 375
>gi|383931061|gb|AFH56927.1| Dax-1, partial [Monopterus albus]
Length = 190
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
LN+++ ++ TRF K+ + L L++I V+ +LFFR +IG
Sbjct: 137 LNEHVRLIHREDTTRFAKLLIALSMLRAISPPVVAQLFFRPVIG 180
>gi|339248547|ref|XP_003373261.1| COUP transcription factor 2 [Trichinella spiralis]
gi|316970660|gb|EFV54553.1| COUP transcription factor 2 [Trichinella spiralis]
Length = 110
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q Q L +Y YP+Q RF K+ L LP L+SI S V+E+LFF ++G T I+
Sbjct: 33 LQEKAQCALEEYCKAQYPTQLNRFGKLLLRLPSLRSISSSVIEQLFFVRLVGK-TPIETL 91
Query: 105 IWHM 108
I M
Sbjct: 92 IRDM 95
>gi|84181453|gb|ABC55065.1| orphan nuclear receptor Tll [Nasonia vitripennis]
Length = 368
Score = 35.4 bits (80), Expect = 4.4, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 67 RFCKIQLILPRLKSIPSLVLEELFFRNIIGHNT 99
++ KI L++P LK I + +EELFFR IG T
Sbjct: 321 KYSKIVLLIPMLKHISAHSIEELFFRKTIGDGT 353
>gi|260800821|ref|XP_002595295.1| hypothetical protein BRAFLDRAFT_96828 [Branchiostoma floridae]
gi|229280540|gb|EEN51307.1| hypothetical protein BRAFLDRAFT_96828 [Branchiostoma floridae]
Length = 1206
Score = 35.4 bits (80), Expect = 4.5, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 56 YIHTVYPSQPTRFCKIQLILPRLKSIPSLVLE 87
YI YP QPTRF ++ + LP ++ + S +L+
Sbjct: 499 YIEAQYPHQPTRFRELMMCLPEIRYVTSKILD 530
Score = 35.4 bits (80), Expect = 4.5, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 56 YIHTVYPSQPTRFCKIQLILPRLKSIPSLVLE 87
YI YP QPTRF ++ + LP ++ + S +L+
Sbjct: 972 YIEAQYPHQPTRFRELMMCLPEIRYVTSKILD 1003
Score = 35.4 bits (80), Expect = 4.5, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 56 YIHTVYPSQPTRFCKIQLILPRLKSIPSLVLE 87
YI YP QPTRF ++ + LP ++ + S +L+
Sbjct: 1145 YIEAQYPHQPTRFRELMMCLPEIRYVTSKILD 1176
>gi|194882843|ref|XP_001975519.1| GG20513 [Drosophila erecta]
gi|190658706|gb|EDV55919.1| GG20513 [Drosophila erecta]
Length = 630
Score = 35.4 bits (80), Expect = 4.5, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q + L+++ T + +Q RF ++ L+LP L+ I S +E ++F+ IG NT ++K
Sbjct: 565 LQDQAHVMLSQHTKTQFTAQIARFGRLLLMLPLLRMISSHKIESIYFQRTIG-NTPMEKV 623
Query: 105 IWHMYKN 111
+ MYKN
Sbjct: 624 LCDMYKN 630
>gi|156545912|ref|XP_001606899.1| PREDICTED: protein tailless [Nasonia vitripennis]
Length = 395
Score = 35.4 bits (80), Expect = 4.5, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 67 RFCKIQLILPRLKSIPSLVLEELFFRNIIGHNT 99
++ KI L++P LK I + +EELFFR IG T
Sbjct: 348 KYSKIVLLIPMLKHISAHSIEELFFRKTIGDGT 380
>gi|156387699|ref|XP_001634340.1| predicted protein [Nematostella vectensis]
gi|156221422|gb|EDO42277.1| predicted protein [Nematostella vectensis]
Length = 391
Score = 35.4 bits (80), Expect = 4.5, Method: Composition-based stats.
Identities = 24/55 (43%), Positives = 32/55 (58%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNT 99
+Q TQ L YI T YP+Q TRF K+ L LP L+ + + +E LFF + NT
Sbjct: 296 LQDRTQSALEDYIRTQYPNQTTRFGKLLLRLPALRLLRPVSVENLFFSRLSMGNT 350
>gi|312382715|gb|EFR28076.1| hypothetical protein AND_04416 [Anopheles darlingi]
Length = 542
Score = 35.4 bits (80), Expect = 4.6, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIK 102
L YI P R+ + +LP ++++ S +EELFFR IG +K
Sbjct: 484 LATYIQQCRPGPTNRYRALLQLLPLMRNVSSYTIEELFFRRNIGPAPLLK 533
>gi|390357069|ref|XP_003728922.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Strongylocentrotus purpuratus]
Length = 585
Score = 35.0 bits (79), Expect = 5.0, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPS 83
+Q TQ+ L +Y H Y +Q RF K+ L+LP ++S+ S
Sbjct: 546 LQDETQLTLAEYNHAHYLTQRARFGKLLLLLPSVRSVRS 584
>gi|395842005|ref|XP_003793811.1| PREDICTED: nuclear receptor subfamily 0 group B member 1 [Otolemur
garnettii]
Length = 472
Score = 35.0 bits (79), Expect = 5.2, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 40 KFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
K+ +Q TQ L +++ + RF ++ L L+ I + V+ ELFFR IIG
Sbjct: 400 KYIQGLQWGTQQILGEHVRMTHRDYQARFAELNSALFLLRFINANVIAELFFRPIIG 456
>gi|221330285|ref|NP_611032.2| hormone receptor 51 [Drosophila melanogaster]
gi|220902230|gb|AAM68536.2| hormone receptor 51 [Drosophila melanogaster]
gi|291490761|gb|ADE06696.1| RT06950p1 [Drosophila melanogaster]
Length = 582
Score = 35.0 bits (79), Expect = 5.3, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q + L+++ T + +Q RF ++ L+LP L+ I S +E ++F+ IG NT ++K
Sbjct: 517 LQDQAHVMLSQHTKTQFTAQIARFGRLLLMLPLLRMISSHKIESIYFQRTIG-NTPMEKV 575
Query: 105 IWHMYKN 111
+ MYKN
Sbjct: 576 LCDMYKN 582
>gi|12698696|gb|AAK01645.1| DAX1 [Hylobates sp. TIB-201]
Length = 470
Score = 35.0 bits (79), Expect = 5.4, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 40 KFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
K+ +Q TQ L++++ + RF ++ L L+ I + V+ ELFFR IIG
Sbjct: 398 KYIQGLQWGTQQILSEHVRMTHQGPHDRFIELNSTLFLLRFINANVIAELFFRPIIG 454
>gi|242020457|ref|XP_002430670.1| retinoid X receptor, putative [Pediculus humanus corporis]
gi|212515850|gb|EEB17932.1| retinoid X receptor, putative [Pediculus humanus corporis]
Length = 344
Score = 35.0 bits (79), Expect = 5.4, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
+Q T I L+ Y T S RF K+ ++LP + + +EEL FR IG
Sbjct: 291 LQDQTHIMLHDYC-TSQDSHKARFGKLLMLLPSVNGLSKDFIEELLFRKTIG 341
>gi|193575673|ref|XP_001945915.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Acyrthosiphon pisum]
Length = 396
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 53 LNKYIHTVYPSQP-TRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKN 111
L ++++ V+ ++P R+ ++ ILP ++S+P + ELFFR IG T I+ + Y N
Sbjct: 316 LRRHVNHVHMARPDARYDELIDILPGIRSVPKTTVVELFFRRTIGQ-TPIEPFVCGTYTN 374
>gi|194754966|ref|XP_001959763.1| GF13031 [Drosophila ananassae]
gi|190621061|gb|EDV36585.1| GF13031 [Drosophila ananassae]
Length = 552
Score = 35.0 bits (79), Expect = 5.4, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q + L+++ T + +Q RF ++ L+LP L+ I S +E ++F+ IG NT ++K
Sbjct: 487 LQDQAHVMLSQHTKTQFTAQIARFGRLLLMLPLLRMISSHKIEAIYFQRTIG-NTPMEKV 545
Query: 105 IWHMYKN 111
+ MYKN
Sbjct: 546 LCDMYKN 552
>gi|14624971|gb|AAG01569.1| ultraspiracle protein [Lucilia cuprina]
Length = 467
Score = 35.0 bits (79), Expect = 5.7, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L+++ T +P RF ++ L LP L+SI L+ LFF +IG
Sbjct: 407 LDEHCRTEHPGDDGRFAQLLLRLPALRSISLKCLDHLFFFRLIG 450
>gi|348571110|ref|XP_003471339.1| PREDICTED: nuclear receptor subfamily 0 group B member 2-like
[Cavia porcellus]
Length = 258
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 97
+Q L + + YP+ R ++ L LKSIP +L +LFFR IIG
Sbjct: 192 LQQEAHWALCEVLEPWYPAGQGRLARVLLTASTLKSIPPSLLGDLFFRPIIGD 244
>gi|189233984|ref|XP_001813130.1| PREDICTED: similar to nuclear receptor [Tribolium castaneum]
gi|270015114|gb|EFA11562.1| hormone receptor in 78-like protein [Tribolium castaneum]
Length = 489
Score = 34.7 bits (78), Expect = 6.8, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 97
L Y+H+ +P RF ++ L LP L+ + LVLEELFF +IG
Sbjct: 409 LKNYVHSSFPDDVDRFPRLLLRLPPLRGLEPLVLEELFFAGLIGQ 453
>gi|332224148|ref|XP_003261226.1| PREDICTED: nuclear receptor subfamily 0 group B member 1 [Nomascus
leucogenys]
Length = 470
Score = 34.7 bits (78), Expect = 6.9, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 40 KFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
K+ +Q TQ L++++ + RF ++ L L+ I + V+ ELFFR IIG
Sbjct: 398 KYIQGLQWGTQQILSEHVRMTHRGPHDRFIELNSTLFLLRFINANVIAELFFRPIIG 454
>gi|350596072|ref|XP_003360721.2| PREDICTED: hypothetical protein LOC100620985 [Sus scrofa]
Length = 462
Score = 34.7 bits (78), Expect = 6.9, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 32/47 (68%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELF 90
++Q Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LF
Sbjct: 384 SLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLF 430
>gi|16797870|gb|AAL29193.1|AF323680_1 nuclear receptor Amtll [Acropora millepora]
Length = 380
Score = 34.7 bits (78), Expect = 7.2, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
+ Q Q+ L +Y+ P+Q RF ++ L+LP L+ I + +EELFF+ IG I++
Sbjct: 313 STQDQAQLMLGEYVRAQCPTQLARFGRLLLLLPALRRISTKEIEELFFKKTIG-AVPIER 371
Query: 104 TIWHMYKN 111
+ M KN
Sbjct: 372 LLSDMMKN 379
>gi|195426545|ref|XP_002061388.1| GK20892 [Drosophila willistoni]
gi|194157473|gb|EDW72374.1| GK20892 [Drosophila willistoni]
Length = 573
Score = 34.7 bits (78), Expect = 7.3, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q + L+++ T + +Q RF ++ L+LP L+ I S +E ++F+ IG NT ++K
Sbjct: 508 LQDQAHVMLSQHTKTQFAAQIARFGRLLLMLPLLRMINSHKIESIYFQRTIG-NTPMEKV 566
Query: 105 IWHMYKN 111
+ MYKN
Sbjct: 567 LCDMYKN 573
>gi|2555197|gb|AAB81535.1| orphan nuclear receptor [Sus scrofa]
Length = 80
Score = 34.7 bits (78), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 40 KFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
K+ +Q TQ L+++I + RF ++ L L+ I + VL ELFFR IIG
Sbjct: 8 KYIQGLQWGTQQILSEHIRMTHRGYQARFAELNSALFLLRFINANVLAELFFRPIIG 64
>gi|70907501|emb|CAH69898.1| retinoid X receptor [Blattella germanica]
Length = 436
Score = 34.7 bits (78), Expect = 8.3, Method: Composition-based stats.
Identities = 39/111 (35%), Positives = 54/111 (48%), Gaps = 15/111 (13%)
Query: 1 MFQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTV 60
M +TEL LR V N ++R +S+ +R K AA L +Y T
Sbjct: 336 MDKTELGCLRSVILFNP--DVRGLKSSQEVELLR----EKVYAA--------LEEYTRTT 381
Query: 61 YPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKN 111
YP +P RF K+ L LP L+SI LE LFF +IG N I + + M ++
Sbjct: 382 YPDEPGRFAKLLLRLPSLRSISLKCLEYLFFFRLIG-NVPIDEFLMEMLES 431
>gi|70907499|emb|CAH69897.1| retinoid X receptor [Blattella germanica]
Length = 413
Score = 34.3 bits (77), Expect = 8.8, Method: Composition-based stats.
Identities = 39/111 (35%), Positives = 54/111 (48%), Gaps = 15/111 (13%)
Query: 1 MFQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTV 60
M +TEL LR V N ++R +S+ +R K AA L +Y T
Sbjct: 313 MDKTELGCLRSVILFNP--DVRGLKSSQEVELLR----EKVYAA--------LEEYTRTT 358
Query: 61 YPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKN 111
YP +P RF K+ L LP L+SI LE LFF +IG N I + + M ++
Sbjct: 359 YPDEPGRFAKLLLRLPSLRSISLKCLEYLFFFRLIG-NVPIDEFLMEMLES 408
>gi|291239171|ref|XP_002739506.1| PREDICTED: nuclear orphan receptor TR2/4-like [Saccoglossus
kowalevskii]
Length = 595
Score = 34.3 bits (77), Expect = 8.9, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 97
L +Y+ YP+ P RF K+ L LP L+ + ++EELFF +IG+
Sbjct: 524 LQEYVTRAYPASPDRFAKLLLRLPALRLLTPSIMEELFFAGLIGN 568
>gi|3127936|emb|CAA06690.1| nuclear receptor [Tenebrio molitor]
Length = 489
Score = 34.3 bits (77), Expect = 9.2, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 97
L Y+H +P RF ++ L LP L+ + LVLEELFF +IG
Sbjct: 408 LKTYVHNSFPDDTDRFPRLLLRLPPLRGLEPLVLEELFFAGLIGQ 452
>gi|156395075|ref|XP_001636937.1| predicted protein [Nematostella vectensis]
gi|156224045|gb|EDO44874.1| predicted protein [Nematostella vectensis]
Length = 307
Score = 34.3 bits (77), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSI 81
L ++ TVYPSQP R KI L LP L+ +
Sbjct: 276 LKLHVETVYPSQPERLAKILLRLPALRDV 304
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.324 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,573,249,552
Number of Sequences: 23463169
Number of extensions: 52579053
Number of successful extensions: 123818
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 122782
Number of HSP's gapped (non-prelim): 1059
length of query: 113
length of database: 8,064,228,071
effective HSP length: 81
effective length of query: 32
effective length of database: 6,163,711,382
effective search space: 197238764224
effective search space used: 197238764224
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 69 (31.2 bits)