BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16764
(113 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q91379|NR2E1_CHICK Nuclear receptor subfamily 2 group E member 1 OS=Gallus gallus
GN=NR2E1 PE=2 SV=1
Length = 385
Score = 68.9 bits (167), Expect = 9e-12, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 24 AYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPS 83
A + GS +R + AA+Q Q+ LN YIHT YP+QP RF K+ L+LP L+SI
Sbjct: 296 AVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISP 355
Query: 84 LVLEELFFRNIIGHNTTIKKTIWHMYKNA 112
+EE+FF+ IG N I + + MYK++
Sbjct: 356 STIEEVFFKKTIG-NVPITRLLSDMYKSS 383
>sp|Q9Y466|NR2E1_HUMAN Nuclear receptor subfamily 2 group E member 1 OS=Homo sapiens
GN=NR2E1 PE=2 SV=1
Length = 385
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 24 AYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPS 83
A + GS +R + AA+Q Q+ LN YIHT YP+QP RF K+ L+LP L+SI
Sbjct: 296 AVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISP 355
Query: 84 LVLEELFFRNIIGHNTTIKKTIWHMYKNA 112
+EE+FF+ IG N I + + MYK++
Sbjct: 356 STIEEVFFKKTIG-NVPITRLLSDMYKSS 383
>sp|Q64104|NR2E1_MOUSE Nuclear receptor subfamily 2 group E member 1 OS=Mus musculus
GN=Nr2e1 PE=1 SV=1
Length = 385
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 24 AYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPS 83
A + GS +R + AA+Q Q+ LN YIHT YP+QP RF K+ L+LP L+SI
Sbjct: 296 AVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISP 355
Query: 84 LVLEELFFRNIIGHNTTIKKTIWHMYKNA 112
+EE+FF+ IG N I + + MYK++
Sbjct: 356 STIEEVFFKKTIG-NVPITRLLSDMYKSS 383
>sp|P70052|NR2E1_XENLA Nuclear receptor subfamily 2 group E member 1 OS=Xenopus laevis
GN=nr2e1 PE=2 SV=1
Length = 386
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 61/109 (55%), Gaps = 7/109 (6%)
Query: 4 TELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPS 63
TE L+ + + + ++ GS +R + +A+Q Q+ LN YIHT YP+
Sbjct: 283 TEFACLKCI------VTFKAGVSTHSGSELRNFRNAAAISALQDEAQLTLNSYIHTRYPT 336
Query: 64 QPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 112
QP RF K+ L+LP L+SI +EE+FF+ IG N I + + MYK++
Sbjct: 337 QPCRFGKLLLLLPALRSINPSTIEEVFFKKTIG-NVPITRVLSDMYKSS 384
>sp|Q9YGL3|NR2E1_ORYLA Nuclear receptor subfamily 2 group E member 1 OS=Oryzias latipes
GN=nr2e1 PE=2 SV=1
Length = 396
Score = 63.2 bits (152), Expect = 5e-10, Method: Composition-based stats.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Query: 43 AAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIK 102
AA+Q Q+ LN YIHT YP+QP RF K+ L+LP L+S+ +EE+FF+ IG N I
Sbjct: 326 AALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSVSPSTIEEVFFKKNIG-NVPIT 384
Query: 103 KTIWHMYKNA 112
+ + MYK++
Sbjct: 385 RLLSDMYKSS 394
>sp|Q90733|COT2_CHICK COUP transcription factor 2 OS=Gallus gallus GN=NR2F2 PE=2 SV=1
Length = 410
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 332 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 390
Query: 104 TIWHM 108
I M
Sbjct: 391 LIRDM 395
>sp|P16375|7UP1_DROME Steroid receptor seven-up, isoforms B/C OS=Drosophila melanogaster
GN=svp PE=2 SV=1
Length = 543
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y T YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 465 SLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVG-KTPIET 523
Query: 104 TIWHM 108
I M
Sbjct: 524 LIRDM 528
>sp|Q9TTR7|COT2_BOVIN COUP transcription factor 2 OS=Bos taurus GN=NR2F2 PE=2 SV=1
Length = 414
Score = 55.8 bits (133), Expect = 8e-08, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 336 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 394
Query: 104 TIWHM 108
I M
Sbjct: 395 LIRDM 399
>sp|O09018|COT2_RAT COUP transcription factor 2 OS=Rattus norvegicus GN=Nr2f2 PE=1 SV=1
Length = 414
Score = 55.8 bits (133), Expect = 8e-08, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 336 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 394
Query: 104 TIWHM 108
I M
Sbjct: 395 LIRDM 399
>sp|P43135|COT2_MOUSE COUP transcription factor 2 OS=Mus musculus GN=Nr2f2 PE=1 SV=2
Length = 414
Score = 55.5 bits (132), Expect = 9e-08, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 336 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 394
Query: 104 TIWHM 108
I M
Sbjct: 395 LIRDM 399
>sp|P24468|COT2_HUMAN COUP transcription factor 2 OS=Homo sapiens GN=NR2F2 PE=1 SV=1
Length = 414
Score = 55.5 bits (132), Expect = 9e-08, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 336 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 394
Query: 104 TIWHM 108
I M
Sbjct: 395 LIRDM 399
>sp|Q60632|COT1_MOUSE COUP transcription factor 1 OS=Mus musculus GN=Nr2f1 PE=2 SV=2
Length = 422
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 342 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 400
Query: 104 TIWHM 108
I M
Sbjct: 401 LIRDM 405
>sp|P10589|COT1_HUMAN COUP transcription factor 1 OS=Homo sapiens GN=NR2F1 PE=1 SV=1
Length = 423
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 343 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 401
Query: 104 TIWHM 108
I M
Sbjct: 402 LIRDM 406
>sp|Q9TTR8|COT1_BOVIN COUP transcription factor 1 OS=Bos taurus GN=NR2F1 PE=2 SV=1
Length = 424
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 344 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 402
Query: 104 TIWHM 108
I M
Sbjct: 403 LIRDM 407
>sp|Q06725|N2F1A_DANRE Nuclear receptor subfamily 2 group F member 1-A OS=Danio rerio
GN=nr2f1a PE=2 SV=1
Length = 411
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QP+RF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 333 SLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 391
Query: 104 TIWHM 108
I M
Sbjct: 392 LIRDM 396
>sp|Q6PH18|N2F1B_DANRE Nuclear receptor subfamily 2 group F member 1-B OS=Danio rerio
GN=nr2f1b PE=2 SV=1
Length = 389
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
+Q +Q L +Y+ + YP+QPTRF K+ L LP L+ + S V+E+LFF ++G T I+
Sbjct: 311 GLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPALRMVSSSVIEQLFFVRLVG-KTPIET 369
Query: 104 TIWHM 108
I M
Sbjct: 370 LIRDM 374
>sp|Q9Y5X4|NR2E3_HUMAN Photoreceptor-specific nuclear receptor OS=Homo sapiens GN=NR2E3
PE=1 SV=1
Length = 410
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
A+Q +Q+ L+++ +PSQP RF K+ L+LP L+ I + +E LFFR IG NT ++K
Sbjct: 344 ALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIG-NTPMEK 402
Query: 104 TIWHMYKN 111
+ M+KN
Sbjct: 403 LLCDMFKN 410
>sp|Q9TTF0|NR2E3_BOVIN Photoreceptor-specific nuclear receptor OS=Bos taurus GN=NR2E3 PE=1
SV=2
Length = 411
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
A+Q +Q+ L+++ +PSQ RF K+ L+LP L+ I S +E LFFR IG NT ++K
Sbjct: 345 ALQDQSQVMLSQHSKAHHPSQLVRFGKLLLLLPSLRFISSERVELLFFRKTIG-NTPMEK 403
Query: 104 TIWHMYKN 111
+ M+KN
Sbjct: 404 LLCDMFKN 411
>sp|P18102|TLL_DROME Protein tailless OS=Drosophila melanogaster GN=tll PE=2 SV=1
Length = 452
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 43 AAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIK 102
AA+ + L+ YI +PSQP RF + ++ + + S +EELFFR IG + TI
Sbjct: 382 AAMHNDARSALHNYIQRTHPSQPMRFQTLLGVVQLMHKVSSFTIEELFFRKTIG-DITIV 440
Query: 103 KTIWHMY 109
+ I MY
Sbjct: 441 RLISDMY 447
>sp|Q5I7G2|RXR_LYMST Retinoic acid receptor RXR OS=Lymnaea stagnalis GN=RXR PE=1 SV=1
Length = 436
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 33 VRFKTGSKFTAAIQGHTQI------FLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVL 86
V F +K A+Q Q+ L +Y T YP +P RF K+ L LP L+SI L
Sbjct: 348 VLFNPDAKGLTAVQEVEQLREKVYASLEEYTKTRYPEEPGRFAKLLLRLPALRSIGLKCL 407
Query: 87 EELFFRNIIG 96
E LFF +IG
Sbjct: 408 EHLFFFKLIG 417
>sp|Q9QXZ7|NR2E3_MOUSE Photoreceptor-specific nuclear receptor OS=Mus musculus GN=Nr2e3
PE=1 SV=1
Length = 395
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
A+Q +Q+ L+++ +PSQP RF K+ L+LP L+ + + +E LFFR IG NT ++K
Sbjct: 329 ALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFLTAERIELLFFRKTIG-NTPMEK 387
Query: 104 TIWHMYKN 111
+ M+KN
Sbjct: 388 LLCDMFKN 395
>sp|O16845|TLL_DROVI Protein tailless OS=Drosophila virilis GN=tll PE=3 SV=1
Length = 450
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 39 SKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHN 98
S AA+ + L+ YI +P+QP RF + ++ + + S +EELFFR IG +
Sbjct: 376 SSKVAAMHNDARNALHNYISRTHPNQPLRFQTLLGVVTLMHKVSSFTIEELFFRKTIG-D 434
Query: 99 TTIKKTIWHMY 109
TI + I MY
Sbjct: 435 ITIVRLISDMY 445
>sp|Q8T5C6|RXR_BIOGL Retinoic acid receptor RXR OS=Biomphalaria glabrata GN=RXR PE=1
SV=1
Length = 436
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 33 VRFKTGSKFTAAIQGHTQI------FLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVL 86
V F +K A+Q Q+ L +Y + YP +P RF K+ L LP L+SI L
Sbjct: 348 VLFNPDAKGLTAVQEVEQLREKVYASLEEYTKSRYPEEPGRFAKLLLRLPALRSIGLKCL 407
Query: 87 EELFFRNIIG 96
E LFF +IG
Sbjct: 408 EHLFFFKLIG 417
>sp|P51129|RXRG_XENLA Retinoic acid receptor RXR-gamma OS=Xenopus laevis GN=rxrg PE=2
SV=1
Length = 470
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 408 LESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 451
>sp|Q5REL6|RXRG_PONAB Retinoic acid receptor RXR-gamma OS=Pongo abelii GN=RXRG PE=2 SV=1
Length = 463
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 401 LEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 444
>sp|P48443|RXRG_HUMAN Retinoic acid receptor RXR-gamma OS=Homo sapiens GN=RXRG PE=1 SV=1
Length = 463
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 401 LEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 444
>sp|P28705|RXRG_MOUSE Retinoic acid receptor RXR-gamma OS=Mus musculus GN=Rxrg PE=2 SV=2
Length = 463
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/56 (44%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHM 108
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M
Sbjct: 401 LEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDSFLMEM 455
>sp|Q5BJR8|RXRG_RAT Retinoic acid receptor RXR-gamma OS=Rattus norvegicus GN=Rxrg PE=2
SV=1
Length = 463
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 401 LEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 444
>sp|Q0VC20|RXRG_BOVIN Retinoic acid receptor RXR-gamma OS=Bos taurus GN=RXRG PE=2 SV=1
Length = 463
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 401 LEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 444
>sp|Q0GFF6|RXRG_PIG Retinoic acid receptor RXR-gamma OS=Sus scrofa GN=RXRG PE=2 SV=2
Length = 463
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 401 LEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 444
>sp|P51128|RXRA_XENLA Retinoic acid receptor RXR-alpha OS=Xenopus laevis GN=rxra PE=1
SV=1
Length = 488
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 426 LEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 469
>sp|P28701|RXRG_CHICK Retinoic acid receptor RXR-gamma OS=Gallus gallus GN=RXRG PE=2 SV=1
Length = 467
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 405 LEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 448
>sp|Q90415|RXRAB_DANRE Retinoic acid receptor RXR-alpha-B OS=Danio rerio GN=rxrab PE=2
SV=1
Length = 379
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 317 LEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 360
>sp|Q6DHP9|RXRGB_DANRE Retinoic acid receptor RXR-gamma-B OS=Danio rerio GN=rxrgb PE=2
SV=1
Length = 452
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 390 LETYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 433
>sp|P28700|RXRA_MOUSE Retinoic acid receptor RXR-alpha OS=Mus musculus GN=Rxra PE=1 SV=1
Length = 467
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 405 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 448
>sp|Q90416|RXRGA_DANRE Retinoic acid receptor RXR-gamma-A OS=Danio rerio GN=rxrga PE=2
SV=2
Length = 441
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 8/57 (14%)
Query: 40 KFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
K A+++G+T+ H YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 374 KVYASLEGYTK-------HN-YPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 422
>sp|Q05343|RXRA_RAT Retinoic acid receptor RXR-alpha OS=Rattus norvegicus GN=Rxra PE=2
SV=1
Length = 467
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 405 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 448
>sp|P19793|RXRA_HUMAN Retinoic acid receptor RXR-alpha OS=Homo sapiens GN=RXRA PE=1 SV=1
Length = 462
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 400 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 443
>sp|A2T929|RXRAA_DANRE Retinoic acid receptor RXR-alpha-A OS=Danio rerio GN=rxraa PE=2
SV=2
Length = 430
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 368 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 411
>sp|Q90417|RXRBB_DANRE Retinoic acid receptor RXR-beta-B OS=Danio rerio GN=rxrbb PE=2 SV=1
Length = 422
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKN 111
L Y YP Q RF K+ L LP L+SI LE LFF +IG NT I + M ++
Sbjct: 363 LESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-NTPIDTFLMEMLES 420
>sp|P49117|NR2C2_MOUSE Nuclear receptor subfamily 2 group C member 2 OS=Mus musculus
GN=Nr2c2 PE=1 SV=1
Length = 596
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 37 TGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
TG+ Q Q+ L Y+ Y R +I + LP L+ + S + EELFF +IG
Sbjct: 509 TGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIG 568
Query: 97 HNTTIKKTIWHMYK 110
N +I I ++ K
Sbjct: 569 -NVSIDSIIPYILK 581
>sp|P55094|NR2C2_RAT Nuclear receptor subfamily 2 group C member 2 OS=Rattus norvegicus
GN=Nr2c2 PE=2 SV=1
Length = 596
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 37 TGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
TG+ Q Q+ L Y+ Y R +I + LP L+ + S + EELFF +IG
Sbjct: 509 TGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIG 568
Query: 97 HNTTIKKTIWHMYK 110
N +I I ++ K
Sbjct: 569 -NVSIDSIIPYILK 581
>sp|P10588|NR2F6_HUMAN Nuclear receptor subfamily 2 group F member 6 OS=Homo sapiens
GN=NR2F6 PE=1 SV=2
Length = 404
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 326 SLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIET 384
Query: 104 TIWHM 108
I M
Sbjct: 385 LIRDM 389
>sp|O09017|NR2F6_RAT Nuclear receptor subfamily 2 group F member 6 OS=Rattus norvegicus
GN=Nr2f6 PE=2 SV=1
Length = 390
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 313 SLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIET 371
Query: 104 TIWHM 108
I M
Sbjct: 372 LIRDM 376
>sp|P43136|NR2F6_MOUSE Nuclear receptor subfamily 2 group F member 6 OS=Mus musculus
GN=Nr2f6 PE=1 SV=2
Length = 390
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q Q+ L +Y+ YPSQP RF ++ L LP L+++P+ ++ +LFF ++G T I+
Sbjct: 313 SLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVG-KTPIET 371
Query: 104 TIWHM 108
I M
Sbjct: 372 LIRDM 376
>sp|P49743|RXRB_RAT Retinoic acid receptor RXR-beta (Fragment) OS=Rattus norvegicus
GN=Rxrb PE=2 SV=1
Length = 458
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 396 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 439
>sp|P28704|RXRB_MOUSE Retinoic acid receptor RXR-beta OS=Mus musculus GN=Rxrb PE=2 SV=2
Length = 520
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 458 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 501
>sp|P28702|RXRB_HUMAN Retinoic acid receptor RXR-beta OS=Homo sapiens GN=RXRB PE=1 SV=2
Length = 533
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 471 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 514
>sp|Q5TJF7|RXRB_CANFA Retinoic acid receptor RXR-beta OS=Canis familiaris GN=RXRB PE=3
SV=1
Length = 533
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 471 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 514
>sp|Q7SYN5|RXRBA_DANRE Retinoic acid receptor RXR-beta-A OS=Danio rerio GN=rxrba PE=2 SV=1
Length = 471
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L Y YP Q RF K+ L LP L+SI LE LFF +IG
Sbjct: 409 LEAYCKQRYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 452
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,525,402
Number of Sequences: 539616
Number of extensions: 1267710
Number of successful extensions: 3203
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3127
Number of HSP's gapped (non-prelim): 82
length of query: 113
length of database: 191,569,459
effective HSP length: 81
effective length of query: 32
effective length of database: 147,860,563
effective search space: 4731538016
effective search space used: 4731538016
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)