Query psy16764
Match_columns 113
No_of_seqs 112 out of 697
Neff 7.7
Searched_HMMs 29240
Date Fri Aug 16 21:24:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16764.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16764hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f5c_B Nuclear receptor subfam 100.0 4.7E-30 1.6E-34 189.2 11.0 106 2-112 162-267 (268)
2 3p0u_A Nuclear receptor subfam 100.0 1.3E-29 4.4E-34 184.7 9.6 106 2-112 131-236 (249)
3 1fcy_A RAR-gamma-1, retinoic a 100.0 3.3E-29 1.1E-33 180.9 9.1 104 2-110 133-236 (236)
4 3plz_A FTZ-F1 related protein; 100.0 1.8E-29 6.2E-34 184.8 7.8 106 2-112 150-255 (257)
5 3k6p_A Steroid hormone recepto 100.0 3.2E-29 1.1E-33 182.5 8.9 106 2-112 137-246 (248)
6 3ltx_A Estrogen receptor; cons 100.0 2.3E-29 7.9E-34 182.7 8.1 106 2-112 126-231 (243)
7 3vi8_A Peroxisome proliferator 100.0 4.4E-29 1.5E-33 184.4 8.8 105 2-111 166-271 (273)
8 2iz2_A FTZ-F1 alpha, nuclear h 100.0 4.3E-29 1.5E-33 181.4 7.5 106 2-112 137-242 (243)
9 3kmr_A Retinoic acid receptor 100.0 7E-29 2.4E-33 182.6 8.6 106 2-112 157-262 (266)
10 2e2r_A Estrogen-related recept 100.0 6.5E-29 2.2E-33 180.4 8.1 106 2-112 137-242 (244)
11 3v3e_B Nuclear receptor subfam 100.0 5.5E-29 1.9E-33 182.5 7.6 103 2-110 140-244 (257)
12 3cjw_A COUP transcription fact 100.0 1.5E-28 5.2E-33 178.1 9.8 106 2-112 128-233 (244)
13 2nxx_A Ultraspiracle (USP, NR2 100.0 1.7E-28 5.9E-33 176.9 8.9 106 2-112 127-232 (235)
14 1ymt_A Steroidogenic factor 1; 100.0 1.4E-28 4.6E-33 178.6 8.2 106 2-112 139-244 (246)
15 1g2n_A Ultraspiracle protein; 100.0 3.3E-28 1.1E-32 178.3 10.2 106 2-112 150-255 (264)
16 3ilz_A Thyroid hormone recepto 100.0 3.1E-28 1.1E-32 179.0 9.9 106 2-112 159-265 (267)
17 1hg4_A Ultraspiracle; nuclear 99.9 6.2E-28 2.1E-32 177.8 10.1 106 2-112 164-269 (279)
18 3tx7_B Nuclear receptor subfam 99.9 2.8E-28 9.7E-33 185.8 7.5 106 2-112 245-350 (352)
19 3u9q_A Peroxisome proliferator 99.9 9.9E-28 3.4E-32 176.8 9.1 105 2-111 163-268 (269)
20 1xdk_B RAR-beta, retinoic acid 99.9 1.1E-27 3.9E-32 178.8 9.1 106 2-112 160-265 (303)
21 1osh_A BIle acid receptor; nuc 99.9 1.3E-27 4.4E-32 171.9 9.1 104 2-111 128-231 (232)
22 3dzy_D Peroxisome proliferator 99.9 1.2E-27 4.1E-32 185.7 9.3 105 2-111 312-417 (419)
23 3b0t_A Vitamin D3 receptor; nu 99.9 8E-28 2.7E-32 175.2 7.1 104 2-110 147-254 (254)
24 2p1t_A Retinoic acid receptor 99.9 1.4E-27 4.9E-32 172.3 7.9 106 2-112 131-236 (240)
25 3oll_A Estrogen receptor beta; 99.9 1.3E-27 4.6E-32 172.7 5.9 106 2-112 123-238 (240)
26 2hc4_A Vitamin D receptor; alp 99.9 2.6E-27 8.9E-32 177.0 7.5 106 2-112 193-300 (302)
27 3ipq_A Oxysterols receptor LXR 99.9 3.7E-27 1.3E-31 174.5 8.3 105 2-112 178-282 (283)
28 1lbd_A RXR_LBD, retinoid X rec 99.9 1.9E-27 6.6E-32 175.5 6.7 106 2-112 173-278 (282)
29 1nq7_A Nuclear receptor ROR-be 99.9 2.8E-27 9.6E-32 171.7 7.3 103 2-110 138-244 (244)
30 1xvp_B Orphan nuclear receptor 99.9 3.3E-27 1.1E-31 171.2 7.7 102 2-110 143-246 (246)
31 1pdu_A DHR38, nuclear hormone 99.9 1.8E-27 6.3E-32 173.1 5.8 105 2-112 135-241 (244)
32 3dzy_A Retinoic acid receptor 99.9 2.3E-27 8E-32 186.3 6.7 106 2-112 358-463 (467)
33 1nrl_A Orphan nuclear receptor 99.9 4.8E-27 1.6E-31 176.8 8.0 105 2-112 208-314 (316)
34 2o4j_A Vitamin D3 receptor; nu 99.9 5.9E-27 2E-31 174.3 7.3 106 2-112 150-259 (292)
35 1n83_A Nuclear receptor ROR-al 99.9 6.3E-27 2.1E-31 172.5 6.5 105 2-112 153-261 (270)
36 1xpc_A Estrogen receptor; nucl 99.9 5.8E-27 2E-31 170.2 5.7 110 2-112 125-241 (248)
37 2r40_D Ecdysone receptor, 20-h 99.9 2E-26 6.8E-31 169.3 8.2 104 2-112 157-263 (266)
38 1yye_A ER-beta, estrogen recep 99.9 1.2E-26 4E-31 170.8 4.5 106 2-112 121-236 (268)
39 1l2j_A Estrogen receptor beta; 99.9 2.7E-26 9.1E-31 169.1 6.3 106 2-112 149-264 (271)
40 2ocf_A Estrogen receptor; estr 99.9 1.7E-26 5.8E-31 172.5 5.2 110 2-112 134-250 (298)
41 3up3_A Acedaf-12; ligand bindi 99.9 2.1E-26 7.2E-31 167.6 4.7 103 2-112 136-243 (243)
42 2nxx_E Ecdysone receptor (ECR, 99.9 1.1E-25 3.7E-30 163.7 8.1 104 2-112 141-245 (248)
43 3l0l_A Nuclear receptor ROR-ga 99.9 1.6E-26 5.6E-31 168.2 3.7 102 2-110 144-248 (248)
44 1ovl_A Orphan nuclear receptor 99.9 1.3E-25 4.6E-30 164.8 8.5 103 2-110 162-266 (271)
45 1pzl_A Hepatocyte nuclear fact 99.9 2.1E-25 7.3E-30 160.0 8.2 107 2-113 131-237 (237)
46 3cqv_A Nuclear receptor subfam 99.9 3.6E-25 1.2E-29 156.2 8.6 90 2-95 109-198 (199)
47 3vhv_A Mineralocorticoid recep 99.9 1.5E-25 5.2E-30 164.2 5.4 105 2-111 131-242 (260)
48 1z5x_E Ecdysone receptor ligan 99.9 4.3E-25 1.5E-29 165.7 8.0 104 2-112 205-309 (310)
49 3n00_A REV-ERBA-alpha; reverba 99.9 1.1E-24 3.8E-29 158.6 7.2 90 2-95 154-243 (245)
50 1t7r_A Androgen receptor; nucl 99.9 8.9E-25 3E-29 160.7 5.0 105 2-111 140-251 (269)
51 3vhu_A Mineralocorticoid recep 99.9 1.4E-24 4.9E-29 161.9 5.1 105 2-111 165-276 (294)
52 1sqn_A PR, progesterone recept 99.9 1.1E-24 3.9E-29 159.5 4.0 103 2-111 132-243 (261)
53 3gyt_A Nuclear hormone recepto 99.9 1.3E-24 4.6E-29 158.4 4.2 96 9-111 143-242 (244)
54 3mnp_A Glucocorticoid receptor 99.9 5.5E-24 1.9E-28 156.1 7.0 105 2-111 133-243 (261)
55 3e9v_A Protein BTG2; B-cell tr 39.0 30 0.001 22.0 3.2 32 36-67 22-54 (120)
56 2v9v_A Selenocysteine-specific 36.3 36 0.0012 20.9 3.3 28 37-65 59-86 (135)
57 2z15_A Protein TOB1; human TOB 34.7 38 0.0013 21.8 3.2 31 37-67 27-58 (130)
58 3rau_A Tyrosine-protein phosph 31.6 24 0.00081 26.3 2.1 31 50-80 25-55 (363)
59 1or4_A Heme-based aerotactic t 27.6 1.1E+02 0.0038 19.8 4.8 19 4-22 36-54 (178)
60 2ixn_A Serine/threonine-protei 26.2 51 0.0017 24.4 3.0 31 39-70 49-82 (310)
61 3c3r_A Programmed cell death 6 24.9 41 0.0014 25.1 2.4 31 50-80 39-72 (380)
62 2ixm_A Serine/threonine-protei 24.0 31 0.0011 25.4 1.5 32 38-70 51-83 (303)
63 4akr_A F-actin-capping protein 21.3 78 0.0027 22.9 3.2 25 40-64 109-133 (281)
64 2aua_A Hypothetical protein; d 20.0 47 0.0016 23.4 1.7 33 39-71 94-131 (224)
No 1
>3f5c_B Nuclear receptor subfamily 0 group B member 1; transcriptional corepressor, regulatory complex, DNA-binding, lipid-binding, metal-binding; 3.00A {Mus musculus}
Probab=99.96 E-value=4.7e-30 Score=189.24 Aligned_cols=106 Identities=25% Similarity=0.240 Sum_probs=103.6
Q ss_pred hHHhhccccCCHHHHHHHHHHHhhcCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHhchhhhcC
Q psy16764 2 FQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSI 81 (113)
Q Consensus 2 f~~~l~~L~ld~~E~~~Lkai~l~~~~~g~~~~~l~~~~~Ve~lqe~~~~aL~~~~~~~~p~~~~Rf~kLLl~Lp~Lr~l 81 (113)
|..+|++|++|++||+|||||++|+||+ +|+.+..+|+++|++++.+|.+|+..+||++|.||++||++||+||++
T Consensus 162 ~~~~l~~L~ld~~E~~lLkAivL~npd~----~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~Lp~LR~i 237 (268)
T 3f5c_B 162 FFFKCWSLNIDTKEYAYLKGTVLFNPDL----PGLQCVKYIEGLQWRTQQILTEHIRMMQREYQIRSAELNSALFLLRFI 237 (268)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHSCTTS----TTCSCHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCC----CCCchHHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999998 799999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhhhcccccCCCCcHHHHHHHHHhCC
Q psy16764 82 PSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 112 (113)
Q Consensus 82 ~~~~~e~L~f~~~~g~~~~i~~Ll~eml~~~ 112 (113)
++.++|++||.+.+| +++|++||.||+++|
T Consensus 238 ~~~~~e~l~~~k~~g-~~~i~~Ll~Eml~a~ 267 (268)
T 3f5c_B 238 NSDVVTELFFRPIIG-AVSMDDMMLEMLCAK 267 (268)
T ss_dssp CSSHHHHHHTHHHHC-SCCHHHHHHHHTTSC
T ss_pred HHHHHHHHhhhhhcC-CCCchHHHHHHHhCc
Confidence 999999999999999 999999999999987
No 2
>3p0u_A Nuclear receptor subfamily 2 group C member 2; ligand binding domain, orphan nuclear receptor, testicular R 4, signaling protein; 3.00A {Homo sapiens}
Probab=99.96 E-value=1.3e-29 Score=184.66 Aligned_cols=106 Identities=26% Similarity=0.372 Sum_probs=102.5
Q ss_pred hHHhhccccCCHHHHHHHHHHHhhcCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHhchhhhcC
Q psy16764 2 FQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSI 81 (113)
Q Consensus 2 f~~~l~~L~ld~~E~~~Lkai~l~~~~~g~~~~~l~~~~~Ve~lqe~~~~aL~~~~~~~~p~~~~Rf~kLLl~Lp~Lr~l 81 (113)
|..+|++|++|++||+|||||++|+||+ +|+.+..+|+++|++++.+|.+||..+||++|.||++||++||+||++
T Consensus 131 ~~~~l~~L~ld~~E~~lLkAivL~~pd~----~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~Rf~~LL~~L~~Lr~i 206 (249)
T 3p0u_A 131 FCNSMAKLDIDGYEYAYLKAIVLFSPDH----PGLTSTSQIEKFQEAAQMELQDYVQATYSEDTYRLARILVRLPALRLM 206 (249)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHTCSCS----TTCCCSHHHHHHHHHHHHHHHHHHHHHTTTCSTHHHHHHTTHHHHHTS
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHhcCCC----CCCccHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999998 799999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhhhcccccCCCCcHHHHHHHHHhCC
Q psy16764 82 PSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 112 (113)
Q Consensus 82 ~~~~~e~L~f~~~~g~~~~i~~Ll~eml~~~ 112 (113)
+++++|++||.+.+| .+++++|+.||++.+
T Consensus 207 ~~~~~e~l~f~~~~g-~~~i~~Ll~eml~~~ 236 (249)
T 3p0u_A 207 SSNITEELFFTGLIG-NVSIDSIIPYILKME 236 (249)
T ss_dssp CHHHHHHHHCCSSHH-HHCHHHHHHHHTTC-
T ss_pred HHHHHHHeeeecccC-CCCHHHHHHHHHhCC
Confidence 999999999999999 999999999999864
No 3
>1fcy_A RAR-gamma-1, retinoic acid receptor gamma-1; isotype selectivity, retinoid ligand complexes, drug design, antiparallel alpha-helical sandwich fold; HET: 564 LMU; 1.30A {Homo sapiens} SCOP: a.123.1.1 PDB: 1fcz_A* 1fcx_A* 1fd0_A* 1exa_A* 1exx_A* 1dkf_B*
Probab=99.96 E-value=3.3e-29 Score=180.89 Aligned_cols=104 Identities=18% Similarity=0.131 Sum_probs=101.2
Q ss_pred hHHhhccccCCHHHHHHHHHHHhhcCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHhchhhhcC
Q psy16764 2 FQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSI 81 (113)
Q Consensus 2 f~~~l~~L~ld~~E~~~Lkai~l~~~~~g~~~~~l~~~~~Ve~lqe~~~~aL~~~~~~~~p~~~~Rf~kLLl~Lp~Lr~l 81 (113)
|..+|++|++|++||+|||||++|+||+ +|+.+..+|+++|+++..+|.+||..+||++|.||++||++||+||++
T Consensus 133 ~~~~l~~L~ld~~E~~lLkaivL~~pd~----~gL~~~~~v~~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~L~~Lr~l 208 (236)
T 1fcy_A 133 FAGQLLPLEMDDTETGLLSAICLICGDR----MDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGI 208 (236)
T ss_dssp HHHHHGGGCCCHHHHHHHHHHHHSCTTS----TTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCchhHHHHHHHHhHHHHHH
Confidence 6789999999999999999999999998 799999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhhhcccccCCCCcHHHHHHHHHh
Q psy16764 82 PSLVLEELFFRNIIGHNTTIKKTIWHMYK 110 (113)
Q Consensus 82 ~~~~~e~L~f~~~~g~~~~i~~Ll~eml~ 110 (113)
++.++|+++|.+.+| ++++++|+.||++
T Consensus 209 ~~~~~e~l~~~~~~~-~~~~~~Ll~Eml~ 236 (236)
T 1fcy_A 209 STKGAERAITLKMEI-PGPMPPLIREMLE 236 (236)
T ss_dssp HHHHHHHHHHHHTTS-SSCCCHHHHHHHC
T ss_pred HHHHHHHHHHHHccC-CCCccHHHHHHhC
Confidence 999999999999999 9999999999985
No 4
>3plz_A FTZ-F1 related protein; alpha helical sandwhich, family five, TRAN factor, transcription-receptor-agonist comple; HET: 470; 1.75A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yok_A* 1yuc_A* 4dor_A* 1zdu_A* 4dos_A* 1zh7_A 1pk5_A 3f5c_A
Probab=99.96 E-value=1.8e-29 Score=184.83 Aligned_cols=106 Identities=18% Similarity=0.308 Sum_probs=102.7
Q ss_pred hHHhhccccCCHHHHHHHHHHHhhcCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHhchhhhcC
Q psy16764 2 FQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSI 81 (113)
Q Consensus 2 f~~~l~~L~ld~~E~~~Lkai~l~~~~~g~~~~~l~~~~~Ve~lqe~~~~aL~~~~~~~~p~~~~Rf~kLLl~Lp~Lr~l 81 (113)
|..+|++|++|++||+|||||++|+||+ +|+.+..+|+++|++++.+|.+|+..+||++|.||++||++||+||++
T Consensus 150 ~~~~l~~L~ld~~E~~lLkAivL~npd~----~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~Lp~Lr~l 225 (257)
T 3plz_A 150 LVAKLRSLQFDQREFVCLKFLVLFSLDV----KNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAI 225 (257)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHSCTTC----CSCTTHHHHHHHHHHHHHHHHHHHHHHCTTSTTHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCC----CCCccHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHhHHHHHH
Confidence 7789999999999999999999999998 799999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhhhcccccCCCCcHHHHHHHHHhCC
Q psy16764 82 PSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 112 (113)
Q Consensus 82 ~~~~~e~L~f~~~~g~~~~i~~Ll~eml~~~ 112 (113)
++.++|+++|.+.+| .+++++|+.||+++|
T Consensus 226 ~~~~~e~l~~~~~~g-~~~i~~Ll~Eml~~k 255 (257)
T 3plz_A 226 SMQAEEYLYYKHLNG-DVPYNNLLIEMLHAK 255 (257)
T ss_dssp HHHHHHHHHHHHHTT-CSCCCSHHHHHHTC-
T ss_pred HHHHHHHHhhhhhcC-CCCHHHHHHHHHhcc
Confidence 999999999999999 999999999999986
No 5
>3k6p_A Steroid hormone receptor ERR1; estrogen related receptor alpha, DNA-binding, isopeptide BON binding, nucleus, phosphoprotein, transcription; HET: 5FB; 2.00A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xb7_A 2pjl_A* 3d24_A
Probab=99.96 E-value=3.2e-29 Score=182.52 Aligned_cols=106 Identities=18% Similarity=0.186 Sum_probs=98.9
Q ss_pred hHHhhccccCCHHHHHHHHHHHhhcCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHhhCC----CcchHHHHHHHhchh
Q psy16764 2 FQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYP----SQPTRFCKIQLILPR 77 (113)
Q Consensus 2 f~~~l~~L~ld~~E~~~Lkai~l~~~~~g~~~~~l~~~~~Ve~lqe~~~~aL~~~~~~~~p----~~~~Rf~kLLl~Lp~ 77 (113)
|..+|++|++|++||+|||||++|+||+ +|+.+..+|+++|++++.+|.+|+..+|| ++|.||++||++||+
T Consensus 137 ~~~~l~~L~ld~~E~~lLkAivL~npd~----~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~~~~~Rf~~LL~~Lp~ 212 (248)
T 3k6p_A 137 LVRRLQALRLEREEYVLLKALALANSDS----VHIEDAEAVEQLREALHEALLEYEAGRAGPGGGAERRRAGRLLLTLPL 212 (248)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHTCCC----TTCSCHHHHHHHHHHHHHHHHHHHHTC----CCCCCH-HHHHHTTHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCccchHHHHHHHHHHHHH
Confidence 6789999999999999999999999998 79999999999999999999999999999 899999999999999
Q ss_pred hhcCChhhhhhhhcccccCCCCcHHHHHHHHHhCC
Q psy16764 78 LKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 112 (113)
Q Consensus 78 Lr~l~~~~~e~L~f~~~~g~~~~i~~Ll~eml~~~ 112 (113)
||++++.++|+++|.+.+| .+++++|+.||+++|
T Consensus 213 Lr~l~~~~~e~l~~~k~~g-~~~i~~Ll~Eml~~k 246 (248)
T 3k6p_A 213 LRQTAGKVLAHFYGVKLEG-KVPMHKLFLEMLEAM 246 (248)
T ss_dssp HHHHHHHHHHHHHCC-CCC-SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccC-CCCHHHHHHHHHhcc
Confidence 9999999999999999999 999999999999875
No 6
>3ltx_A Estrogen receptor; constitutive, nuclear receptor, DNA-binding, metal-binding, nucleus, transcription, transcription regulation, zinc-finger; 2.60A {Crassostrea gigas}
Probab=99.96 E-value=2.3e-29 Score=182.65 Aligned_cols=106 Identities=9% Similarity=-0.010 Sum_probs=102.8
Q ss_pred hHHhhccccCCHHHHHHHHHHHhhcCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHhchhhhcC
Q psy16764 2 FQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSI 81 (113)
Q Consensus 2 f~~~l~~L~ld~~E~~~Lkai~l~~~~~g~~~~~l~~~~~Ve~lqe~~~~aL~~~~~~~~p~~~~Rf~kLLl~Lp~Lr~l 81 (113)
|..+|++|++|++||+|||||++|+||+ +++.+..+|+.+|++++.+|.+||..+||++|.||++||++||+||++
T Consensus 126 ~~~~l~~L~ld~~E~~lLkaivL~~pd~----~gL~~~~~v~~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~Lp~Lr~l 201 (243)
T 3ltx_A 126 VSEQMMQNHLHKDELLLLQAMVLVNAEV----RRLASYNQIFNMQQSLLDAIVDTAQKYHPDNVRHVPAVLLLLTHIRQA 201 (243)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTSCC----SCCTTHHHHHHHHHHHHHHHHHHHHHHSTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999998 799999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhhhcccccCCCCcHHHHHHHHHhCC
Q psy16764 82 PSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 112 (113)
Q Consensus 82 ~~~~~e~L~f~~~~g~~~~i~~Ll~eml~~~ 112 (113)
++.+++++++.+.+| .+++++|+.||++++
T Consensus 202 ~~~~~e~l~~~~~~g-~~~~~~Ll~Eml~~~ 231 (243)
T 3ltx_A 202 GERGIAFFQRLKSEG-VVTFCDLLKEMLDAQ 231 (243)
T ss_dssp HHHHHHHHHHHHHHC-SSCCCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcC-CCChhHHHHHHHhCc
Confidence 999999999999999 999999999999864
No 7
>3vi8_A Peroxisome proliferator-activated receptor alpha; nuclear receptor, protein-ligand complex, PPAR, transcriptio; HET: 13M; 1.75A {Homo sapiens} PDB: 2znn_A* 3et1_A* 3kdu_A* 3kdt_A* 2rew_A* 1i7g_A* 3g8i_A* 1kkq_A* 1k7l_A* 3sp6_A* 2npa_A* 2p54_A* 3fei_A* 3tkm_A* 2znq_A* 2znp_A* 3sp9_A* 3gwx_A* 3dy6_A* 1gwx_A* ...
Probab=99.96 E-value=4.4e-29 Score=184.45 Aligned_cols=105 Identities=10% Similarity=0.105 Sum_probs=100.1
Q ss_pred hHHhhccccCCHHHHHHHHHHHhhcCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHhchhhhcC
Q psy16764 2 FQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSI 81 (113)
Q Consensus 2 f~~~l~~L~ld~~E~~~Lkai~l~~~~~g~~~~~l~~~~~Ve~lqe~~~~aL~~~~~~~~p~~~~Rf~kLLl~Lp~Lr~l 81 (113)
|..+|++|++|++||+|||||+||+||+ +|+.++.+|+.+|++++.+|++||..+||++|.||++||++||+||++
T Consensus 166 ~~~~~~~L~ld~~E~alLkAivLf~pd~----~gL~~~~~Ve~lqe~~~~aL~~yi~~~~p~~~~rF~kLL~~Lp~LR~l 241 (273)
T 3vi8_A 166 FAMKFNALELDDSDISLFVAAIICCGDR----PGLLNVGHIEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMADLRQL 241 (273)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHSCTTC----TTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCCC----CCcccHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999 799999999999999999999999999999999999999999999999
Q ss_pred Chhhhhhhh-cccccCCCCcHHHHHHHHHhC
Q psy16764 82 PSLVLEELF-FRNIIGHNTTIKKTIWHMYKN 111 (113)
Q Consensus 82 ~~~~~e~L~-f~~~~g~~~~i~~Ll~eml~~ 111 (113)
++.++++++ |++..| ++++++|+.||+.+
T Consensus 242 ~~~~~e~l~~~k~~~~-~~~~~~Ll~Emf~d 271 (273)
T 3vi8_A 242 VTEHAQLVQIIKKTES-DAALHPLLQEIYRD 271 (273)
T ss_dssp HHHHHHHHHHHHHHCT-TCCCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHccCC-CCCccHHHHHHHHh
Confidence 999999998 455678 99999999999974
No 8
>2iz2_A FTZ-F1 alpha, nuclear hormone receptor FTZ-F1; nuclear protein, phosphorylation, PAIR-RULE protein; 2.8A {Drosophila melanogaster} PDB: 2xhs_A
Probab=99.95 E-value=4.3e-29 Score=181.36 Aligned_cols=106 Identities=18% Similarity=0.233 Sum_probs=103.3
Q ss_pred hHHhhccccCCHHHHHHHHHHHhhcCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHhchhhhcC
Q psy16764 2 FQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSI 81 (113)
Q Consensus 2 f~~~l~~L~ld~~E~~~Lkai~l~~~~~g~~~~~l~~~~~Ve~lqe~~~~aL~~~~~~~~p~~~~Rf~kLLl~Lp~Lr~l 81 (113)
|..+|++|++|++||+|||||++|+|++ +|+.+..+|+++|+++..+|.+||..+||++|.||++||++||+||++
T Consensus 137 ~~~~l~~L~ld~~E~~lLkAivL~npd~----~gL~~~~~v~~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~L~~Lr~l 212 (243)
T 2iz2_A 137 LQNKLQDLKFDMGDYVCMKFLILLNPSV----RGIVNRKTVSEGHDNVQAALLDYTLTCYPSVNDKFRGLVNILPEIHAM 212 (243)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHCCTTS----TTCSCHHHHHHHHHHHHHHHHHHHHHHCTTSTTHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCCC----CCcccHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999998 799999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhhhcccccCCCCcHHHHHHHHHhCC
Q psy16764 82 PSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 112 (113)
Q Consensus 82 ~~~~~e~L~f~~~~g~~~~i~~Ll~eml~~~ 112 (113)
++.++|+++|.+.+| .+++++|+.||++++
T Consensus 213 ~~~~~e~l~~~~~~g-~~~~~~Ll~Eml~~~ 242 (243)
T 2iz2_A 213 AVRGEDHLYTKHCAG-SAPTQTLLMEMLHAK 242 (243)
T ss_dssp HHHHHHHHHHHHHTT-CSCSSSHHHHHHHTT
T ss_pred HHHHHHHHHHhhccC-CCcHHHHHHHHHhcC
Confidence 999999999999999 999999999999986
No 9
>3kmr_A Retinoic acid receptor alpha; nuclear receptor transcription factor ligand binding domain, binding, metal-binding, nucleus, phosphoprotein; HET: EQN; 1.80A {Homo sapiens} PDB: 3kmz_B* 3a9e_B* 4dm6_A* 1xap_A* 4dm8_A* 2lbd_A* 3lbd_A* 4lbd_A*
Probab=99.95 E-value=7e-29 Score=182.59 Aligned_cols=106 Identities=20% Similarity=0.189 Sum_probs=101.8
Q ss_pred hHHhhccccCCHHHHHHHHHHHhhcCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHhchhhhcC
Q psy16764 2 FQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSI 81 (113)
Q Consensus 2 f~~~l~~L~ld~~E~~~Lkai~l~~~~~g~~~~~l~~~~~Ve~lqe~~~~aL~~~~~~~~p~~~~Rf~kLLl~Lp~Lr~l 81 (113)
|..+|++|++|++||+|||||++|+||+ +++.+..+|+++|++++.+|.+||..+||++|.||++||++||+||++
T Consensus 157 ~~~~l~~L~ld~~E~~lLkAIvL~~pd~----~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~Lp~Lr~i 232 (266)
T 3kmr_A 157 FANQLLPLEMDDAETGLLSAICLICGDR----QDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSI 232 (266)
T ss_dssp HHHHHGGGCCCHHHHHHHHHHHHSCTTS----TTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcccHHHHHHHHhHHHHHH
Confidence 6789999999999999999999999998 799999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhhhcccccCCCCcHHHHHHHHHhCC
Q psy16764 82 PSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 112 (113)
Q Consensus 82 ~~~~~e~L~f~~~~g~~~~i~~Ll~eml~~~ 112 (113)
++.++|+++|.+.+| .+++++|+.||++++
T Consensus 233 ~~~~~e~l~~~k~~~-~~~~~~Ll~Eml~~~ 262 (266)
T 3kmr_A 233 SAKGAERVITLKMEI-PGSMPPLIQEMLENS 262 (266)
T ss_dssp HHHHHHHHHHHHHHS-SSCCCHHHHHHHC--
T ss_pred HHHHHHHHHHHHhcC-CCCcchHHHHHhcCC
Confidence 999999999999999 999999999999874
No 10
>2e2r_A Estrogen-related receptor gamma; ERR gamma, BPA, nuclear receptor, transcription; HET: 2OH; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 2zas_A* 2zbs_A 2zkc_A* 2p7g_A* 1vjb_A* 1tfc_A 2p7a_A* 2p7z_A* 2gpu_A* 1kv6_A 2gp7_A 2gpp_A* 2gpo_A* 2gpv_A* 1s9q_A* 1s9p_A* 2ewp_A*
Probab=99.95 E-value=6.5e-29 Score=180.37 Aligned_cols=106 Identities=15% Similarity=0.192 Sum_probs=103.1
Q ss_pred hHHhhccccCCHHHHHHHHHHHhhcCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHhchhhhcC
Q psy16764 2 FQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSI 81 (113)
Q Consensus 2 f~~~l~~L~ld~~E~~~Lkai~l~~~~~g~~~~~l~~~~~Ve~lqe~~~~aL~~~~~~~~p~~~~Rf~kLLl~Lp~Lr~l 81 (113)
|..+|++|++|++||+|||||++|+||+ +++.+..+|+++|++++.+|.+|+..+||++|.||++||++||+||++
T Consensus 137 ~~~~l~~L~ld~~E~~lLkAivL~~pd~----~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~Rf~~LL~~L~~Lr~~ 212 (244)
T 2e2r_A 137 LVKKYKSMKLEKEEFVTLKAIALANSDS----MHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMTLPLLRQT 212 (244)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHTCCC----TTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccCC----CCCcCHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999998 789999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhhhcccccCCCCcHHHHHHHHHhCC
Q psy16764 82 PSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 112 (113)
Q Consensus 82 ~~~~~e~L~f~~~~g~~~~i~~Ll~eml~~~ 112 (113)
++.++++++|.+.+| .+++++|+.||++++
T Consensus 213 ~~~~~e~l~~~~~~~-~~~~~~Ll~Eml~~~ 242 (244)
T 2e2r_A 213 STKAVQHFYNIKLEG-KVPMHKLFLEMLEAK 242 (244)
T ss_dssp HHHHHHHHHHHHHHC-CSCCCHHHHHHHTSC
T ss_pred HHHHHHHHHHhhcCC-CCChHHHHHHHHhCc
Confidence 999999999999999 999999999999986
No 11
>3v3e_B Nuclear receptor subfamily 4 group A member 1; orphan nuclear receptor, transcription; 2.06A {Homo sapiens} PDB: 3v3q_A* 2qw4_A 1yje_A
Probab=99.95 E-value=5.5e-29 Score=182.53 Aligned_cols=103 Identities=15% Similarity=0.160 Sum_probs=96.7
Q ss_pred hHHhhccccCCHHHHHHHHHHHhhcCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHh--hCCCcchHHHHHHHhchhhh
Q psy16764 2 FQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHT--VYPSQPTRFCKIQLILPRLK 79 (113)
Q Consensus 2 f~~~l~~L~ld~~E~~~Lkai~l~~~~~g~~~~~l~~~~~Ve~lqe~~~~aL~~~~~~--~~p~~~~Rf~kLLl~Lp~Lr 79 (113)
|+++|++|++|++||+|||||+||| |+ +|+.|+.+|+++|++++.+|++|+.. .+|+++.||++||++||+||
T Consensus 140 ~~~~l~~L~ld~~E~a~LkAivLfs-d~----~gL~~~~~Ve~lqe~~~~aL~~yi~~~~~~p~~~~rf~kLL~~Lp~LR 214 (257)
T 3v3e_B 140 FSRSLHSLLVDVPAFACLSALVLIT-DR----HGLQEPRRVEELQNRIASCLKEHVAAVAGEPQPASCLSRLLGKLPELR 214 (257)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHSS-CC----TTCSSHHHHHHHHHHHHHHHHHHHHHHHCSCC-CHHHHHHHTHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhC-CC----CCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCcHhhHHHHHHHHHHHHH
Confidence 7889999999999999999999998 55 57999999999999999999999974 47899999999999999999
Q ss_pred cCChhhhhhhhcccccCCCCcHHHHHHHHHh
Q psy16764 80 SIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 110 (113)
Q Consensus 80 ~l~~~~~e~L~f~~~~g~~~~i~~Ll~eml~ 110 (113)
+++++++|++||.|..| .+++++|+.||+.
T Consensus 215 ~l~~~~~e~l~~~k~~~-~~~~~~Ll~Emf~ 244 (257)
T 3v3e_B 215 TLCTQGLQRIFYLKLED-LVPPPPIIDKIFM 244 (257)
T ss_dssp HHHHHHHHHHHHHHHHC-SSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCC-CCCccHHHHHHHH
Confidence 99999999999999999 9999999999985
No 12
>3cjw_A COUP transcription factor 2; COUP-TFII, nuclear receptor, ligand binding domain, orphan receptor, three-layered helical sandwich, DNA-binding; 1.48A {Homo sapiens}
Probab=99.95 E-value=1.5e-28 Score=178.08 Aligned_cols=106 Identities=32% Similarity=0.486 Sum_probs=102.4
Q ss_pred hHHhhccccCCHHHHHHHHHHHhhcCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHhchhhhcC
Q psy16764 2 FQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSI 81 (113)
Q Consensus 2 f~~~l~~L~ld~~E~~~Lkai~l~~~~~g~~~~~l~~~~~Ve~lqe~~~~aL~~~~~~~~p~~~~Rf~kLLl~Lp~Lr~l 81 (113)
|..+|++|++|++||+|||||++|+||+ +++.+...|+++|++++.+|.+||..+||++|.||++||++||+||++
T Consensus 128 ~~~~~~~L~ld~~E~~lLkaivL~~pd~----~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~Rf~~LLl~L~~Lr~l 203 (244)
T 3cjw_A 128 QVEKLKALHVDSAEYSCLKAIVLFTSDA----CGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTV 203 (244)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHSCTTS----TTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHTTHHHHHHS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhHHHHhh
Confidence 4678999999999999999999999998 789999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhhhcccccCCCCcHHHHHHHHHhCC
Q psy16764 82 PSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 112 (113)
Q Consensus 82 ~~~~~e~L~f~~~~g~~~~i~~Ll~eml~~~ 112 (113)
+++++|++++.+.+| .+++++|+.||+.++
T Consensus 204 ~~~~~e~l~~~~~~~-~~~~~~Ll~eml~~~ 233 (244)
T 3cjw_A 204 SSSVIEQLFFVRLVG-KTPIETLIRDMLLSG 233 (244)
T ss_dssp CHHHHHHHHTHHHHT-TCCGGGTHHHHHTCC
T ss_pred hHHHHHHHHhhcccC-CCcHHHHHHHHHhCC
Confidence 999999999999999 999999999999875
No 13
>2nxx_A Ultraspiracle (USP, NR2B4); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}
Probab=99.95 E-value=1.7e-28 Score=176.94 Aligned_cols=106 Identities=25% Similarity=0.378 Sum_probs=102.3
Q ss_pred hHHhhccccCCHHHHHHHHHHHhhcCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHhchhhhcC
Q psy16764 2 FQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSI 81 (113)
Q Consensus 2 f~~~l~~L~ld~~E~~~Lkai~l~~~~~g~~~~~l~~~~~Ve~lqe~~~~aL~~~~~~~~p~~~~Rf~kLLl~Lp~Lr~l 81 (113)
|..+|++|++|++||+|||||++|+|++ +|+.+...|+++|+++..+|.+|+..+||++|.||++||++||+||++
T Consensus 127 ~~~~l~~L~ld~~E~~lLkaivL~~pd~----~gL~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~Rf~~LL~~L~~Lr~~ 202 (235)
T 2nxx_A 127 LVNKMKEMKMDKTELGCLRAIILYNPDV----RGIKSVQEVEMLREKIYGVLEEYTRTTHPNEPGRFAKLLLRLPALRSI 202 (235)
T ss_dssp THHHHHHHTCCHHHHHHHHHHHHCCTTS----TTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhHHHHHH
Confidence 6789999999999999999999999998 789999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhhhcccccCCCCcHHHHHHHHHhCC
Q psy16764 82 PSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 112 (113)
Q Consensus 82 ~~~~~e~L~f~~~~g~~~~i~~Ll~eml~~~ 112 (113)
++.++|+++|.+.+| .+++++|+.||++++
T Consensus 203 ~~~~~e~l~~~~~~g-~~~~~~Ll~eml~~~ 232 (235)
T 2nxx_A 203 GLKCLEHLFFFKLIG-DVPIDTFLMEMLEGT 232 (235)
T ss_dssp HHTCCSCTTTTSSSS-CCCHHHHHHHHTTC-
T ss_pred HHHHHHHHHhhcccC-CCcHHHHHHHHHhCC
Confidence 999999999999999 999999999999875
No 14
>1ymt_A Steroidogenic factor 1; SF-1, ligand-binding domain, ligand, phosphatidyl glycerol, CO-repressor peptide, transcription; HET: DR9; 1.20A {Mus musculus} PDB: 3f7d_A* 1yp0_A* 1yow_A* 1zdt_A*
Probab=99.95 E-value=1.4e-28 Score=178.64 Aligned_cols=106 Identities=15% Similarity=0.242 Sum_probs=102.4
Q ss_pred hHHhhccccCCHHHHHHHHHHHhhcCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHhchhhhcC
Q psy16764 2 FQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSI 81 (113)
Q Consensus 2 f~~~l~~L~ld~~E~~~Lkai~l~~~~~g~~~~~l~~~~~Ve~lqe~~~~aL~~~~~~~~p~~~~Rf~kLLl~Lp~Lr~l 81 (113)
|..+|++|++|++||+|||||++|+||+ +|+.+..+|+++|+++..+|.+|+..+||++|.||++||++||+||++
T Consensus 139 ~~~~~~~L~ld~~E~~lLkAivL~~pd~----~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~Rf~~LL~~L~~Lr~~ 214 (246)
T 1ymt_A 139 LVLQLHALQLDRQEFVCLKFLILFSLDV----KFLNNHSLVKDAQEKANAALLDYTLSHYPHSGDKFQQLLLSLVEVRAL 214 (246)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHTCSCG----GGSSCHHHHHHHHHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcCCcc----cccccHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHhHHHHHH
Confidence 6789999999999999999999999998 789999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhhhcccccCCCCcHHHHHHHHHhCC
Q psy16764 82 PSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 112 (113)
Q Consensus 82 ~~~~~e~L~f~~~~g~~~~i~~Ll~eml~~~ 112 (113)
++.++++++|.+.+| .+++++|+.||++++
T Consensus 215 ~~~~~e~l~~~~~~~-~~~~~~Ll~Eml~~~ 244 (246)
T 1ymt_A 215 SMQAKEYLYHKHLGN-EMPRNNLLIEMLQAK 244 (246)
T ss_dssp HHHHHHHHHHHHHTT-CSCTTCHHHHHHHC-
T ss_pred HHHHHHHHHhhcccC-CCcHHHHHHHHHhCc
Confidence 999999999999999 999999999999876
No 15
>1g2n_A Ultraspiracle protein; antiparallel alpha-helical sandwich, structural proteomics in europe, spine, structural genomics, gene regulation; HET: EPH; 1.65A {Heliothis virescens} SCOP: a.123.1.1 PDB: 2r40_A* 1r20_A* 1r1k_A* 3ixp_A*
Probab=99.95 E-value=3.3e-28 Score=178.28 Aligned_cols=106 Identities=22% Similarity=0.309 Sum_probs=102.6
Q ss_pred hHHhhccccCCHHHHHHHHHHHhhcCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHhchhhhcC
Q psy16764 2 FQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSI 81 (113)
Q Consensus 2 f~~~l~~L~ld~~E~~~Lkai~l~~~~~g~~~~~l~~~~~Ve~lqe~~~~aL~~~~~~~~p~~~~Rf~kLLl~Lp~Lr~l 81 (113)
|..+|++|++|++||+|||||+||+|++ +|+.+..+|+++|++++.+|.+|+..+||++|.||++||++||+||++
T Consensus 150 ~~~~~~~L~ld~~E~~lLkAivL~npd~----~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~Rf~~LL~~L~~Lr~l 225 (264)
T 1g2n_A 150 LSLKMRTLRVDQAEYVALKAIILLNPDV----KGLKNRQEVEVLREKMFLCLDEYCRRSRSSEEGRFAALLLRLPALRSI 225 (264)
T ss_dssp THHHHHHTTCCHHHHHHHHHHHHSCTTC----TTCSCHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHTHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCCC----CCCccHHHHHHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999998 789999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhhhcccccCCCCcHHHHHHHHHhCC
Q psy16764 82 PSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 112 (113)
Q Consensus 82 ~~~~~e~L~f~~~~g~~~~i~~Ll~eml~~~ 112 (113)
++.++++++|.+.+| .+++++|+.||+.++
T Consensus 226 ~~~~~e~l~~~~~~~-~~~~~~Ll~Eml~~~ 255 (264)
T 1g2n_A 226 SLKSFEHLFFFHLVA-DTSIAGYIRDALRNH 255 (264)
T ss_dssp HHHHHHHHHHTTCBC-TTTHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhhcC-CCChHHHHHHHHhCC
Confidence 999999999999999 999999999999864
No 16
>3ilz_A Thyroid hormone receptor, alpha isoform 1 variant; nuclear receptor, signaling protein; HET: B72; 1.85A {Homo sapiens} SCOP: a.123.1.1 PDB: 3jzb_A* 3hzf_A* 2h79_A* 2h77_A* 1nav_A* 3uvv_A* 1xzx_X* 1y0x_X* 1nq1_A* 3jzc_A* 1nuo_A* 3imy_A* 1nq0_A* 1bsx_A* 1r6g_A* 1nq2_A* 3gws_X* 1n46_A* 2h6w_X* 2j4a_A* ...
Probab=99.95 E-value=3.1e-28 Score=179.01 Aligned_cols=106 Identities=10% Similarity=0.117 Sum_probs=101.6
Q ss_pred hHHhhccccCCHHHHHHHHHHHhhcCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHhchhhhcC
Q psy16764 2 FQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSI 81 (113)
Q Consensus 2 f~~~l~~L~ld~~E~~~Lkai~l~~~~~g~~~~~l~~~~~Ve~lqe~~~~aL~~~~~~~~p~~~~Rf~kLLl~Lp~Lr~l 81 (113)
|..+|++|++|++||+|||||++|+||+ +|+.+..+|+++|++++.+|.+||..+||++|.||++||++||+||++
T Consensus 159 ~~~~l~~L~ld~~E~~lLkAivL~~pd~----~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~Rf~~LL~~Lp~Lr~l 234 (267)
T 3ilz_A 159 LGKSLSAFNLDDTEVALLQAVLLMSTDR----SGLLXVDKIEKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKVTDLRMI 234 (267)
T ss_dssp HHHHHGGGCCCHHHHHHHHHHHHSCCCS----SSCSCHHHHHHHHHHHHHHHHHHHHHHTCSSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCC----CCCchHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhHHHHHH
Confidence 7889999999999999999999999998 799999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhhhcccccCCCCcH-HHHHHHHHhCC
Q psy16764 82 PSLVLEELFFRNIIGHNTTI-KKTIWHMYKNA 112 (113)
Q Consensus 82 ~~~~~e~L~f~~~~g~~~~i-~~Ll~eml~~~ 112 (113)
++.++|+++|.+..| .+++ ++|+.||+++.
T Consensus 235 ~~~~~e~l~~~k~~~-~~~~~~~Ll~Em~~~~ 265 (267)
T 3ilz_A 235 GAXHASRFLHMKVEX-PTELFPPLFLEVFEDQ 265 (267)
T ss_dssp HHHHHHHHHC-CCSS-CGGGSCHHHHHHTCCS
T ss_pred HHHHHHHHHHHHhcC-CccCCCcHHHHHhcCC
Confidence 999999999999999 9998 99999999863
No 17
>1hg4_A Ultraspiracle; nuclear hormone receptor, transcription factor, ligand binding; HET: LPP; 2.4A {Drosophila melanogaster} SCOP: a.123.1.1
Probab=99.95 E-value=6.2e-28 Score=177.79 Aligned_cols=106 Identities=18% Similarity=0.217 Sum_probs=102.8
Q ss_pred hHHhhccccCCHHHHHHHHHHHhhcCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHhchhhhcC
Q psy16764 2 FQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSI 81 (113)
Q Consensus 2 f~~~l~~L~ld~~E~~~Lkai~l~~~~~g~~~~~l~~~~~Ve~lqe~~~~aL~~~~~~~~p~~~~Rf~kLLl~Lp~Lr~l 81 (113)
|..+|++|++|.+||+|||||++|+|++ +|+.+...|+++|++++.+|.+|+..+||++|.||++||++||+||++
T Consensus 164 ~~~~~~~L~ld~~E~~lLkAivL~npd~----~gL~~~~~v~~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~L~~Lr~~ 239 (279)
T 1hg4_A 164 LSVKMKRLNLDRRELSCLKAIILYNPDI----RGIKSRAEIEMCREKVYACLDEHCRLEHPGDDGRFAQLLLRLPALRSI 239 (279)
T ss_dssp THHHHHHHTCCHHHHHHHHHHHHSCTTS----TTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHcCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999998 789999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhhhcccccCCCCcHHHHHHHHHhCC
Q psy16764 82 PSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 112 (113)
Q Consensus 82 ~~~~~e~L~f~~~~g~~~~i~~Ll~eml~~~ 112 (113)
+..++++++|.+.+| .+++++|+.||+.++
T Consensus 240 ~~~~~e~l~~~~~~g-~~~~~~Ll~Eml~~~ 269 (279)
T 1hg4_A 240 SLKCQDHLFLFRITS-DRPLEELFLEQLEAP 269 (279)
T ss_dssp HHHHHHHHHHHTCBC-SSCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHhhhC-CCcHHHHHHHHHhCC
Confidence 999999999999999 999999999999875
No 18
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens}
Probab=99.95 E-value=2.8e-28 Score=185.84 Aligned_cols=106 Identities=18% Similarity=0.308 Sum_probs=97.2
Q ss_pred hHHhhccccCCHHHHHHHHHHHhhcCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHhchhhhcC
Q psy16764 2 FQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSI 81 (113)
Q Consensus 2 f~~~l~~L~ld~~E~~~Lkai~l~~~~~g~~~~~l~~~~~Ve~lqe~~~~aL~~~~~~~~p~~~~Rf~kLLl~Lp~Lr~l 81 (113)
|..+|++|++|++||+|||||+||+||+ +++.+..+|+++|++++.+|.+||..+||+++.||++||++||+||++
T Consensus 245 l~~~l~~L~ld~~EyalLkAIvLfnpd~----~gLs~~~~Ve~lQe~~~~aL~~y~~~~~p~~~~RF~kLLllLp~LR~l 320 (352)
T 3tx7_B 245 LVAKLRSLQFDQREFVCLKFLVLFSLDV----KNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAI 320 (352)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHSCSCC----------CHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC----CCCchHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHH
Confidence 7789999999999999999999999998 789999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhhhcccccCCCCcHHHHHHHHHhCC
Q psy16764 82 PSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 112 (113)
Q Consensus 82 ~~~~~e~L~f~~~~g~~~~i~~Ll~eml~~~ 112 (113)
+++++|+++|.+.+| .+++++||.||+++|
T Consensus 321 s~~~~e~L~~~kl~g-~~~i~~LL~EMl~ak 350 (352)
T 3tx7_B 321 SMQAEEYLYYKHLNG-DVPYNNLLIEMLHAK 350 (352)
T ss_dssp HHHHHHHHHHHHTTT-CSCSSCHHHHHHHC-
T ss_pred HHHHHHHHHHhhhcC-CCCccHHHHHHHhcc
Confidence 999999999999999 999999999999986
No 19
>3u9q_A Peroxisome proliferator-activated receptor gamma; nuclear receptor, adipogenesis, RXRA, nucleus, transcription; HET: DKA; 1.52A {Homo sapiens} SCOP: a.123.1.1 PDB: 1i7i_A* 3ty0_A* 1zeo_A* 2p4y_A* 3et3_A* 3et0_A* 2hwq_A* 2ath_A* 2f4b_A* 2g0g_A* 2g0h_A* 2gtk_A* 2fvj_A* 2hwr_A* 2prg_A* 2q8s_A* 3fej_A* 3g9e_A* 3gbk_A* 3ia6_A* ...
Probab=99.95 E-value=9.9e-28 Score=176.84 Aligned_cols=105 Identities=14% Similarity=0.143 Sum_probs=99.6
Q ss_pred hHHhhccccCCHHHHHHHHHHHhhcCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHhchhhhcC
Q psy16764 2 FQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSI 81 (113)
Q Consensus 2 f~~~l~~L~ld~~E~~~Lkai~l~~~~~g~~~~~l~~~~~Ve~lqe~~~~aL~~~~~~~~p~~~~Rf~kLLl~Lp~Lr~l 81 (113)
|+.+|++|++|++||+|||||++|+||+ +|+.++.+|+++|++++.+|.+||..+||++|.||++||++||+||++
T Consensus 163 ~~~~l~~L~ld~~E~alLkAIvLfnpd~----~gL~~~~~Ve~lqe~~~~aL~~y~~~~~p~~~~Rf~kLL~~Lp~LR~i 238 (269)
T 3u9q_A 163 FAVKFNALELDDSDLAIFIAVIILSGDR----PGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQI 238 (269)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHTCTTS----TTCSCHHHHHHHHHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHhCCCC----CCCccHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhHHHHHH
Confidence 7889999999999999999999999998 799999999999999999999999999999999999999999999999
Q ss_pred Chhhhhhhhc-ccccCCCCcHHHHHHHHHhC
Q psy16764 82 PSLVLEELFF-RNIIGHNTTIKKTIWHMYKN 111 (113)
Q Consensus 82 ~~~~~e~L~f-~~~~g~~~~i~~Ll~eml~~ 111 (113)
+..+++.+++ .+..| ++++++|+.||+++
T Consensus 239 ~~~~~~~l~~~k~~~~-~~~~~~Ll~Em~~~ 268 (269)
T 3u9q_A 239 VTEHVQLLQVIKKTET-DMSLHPLLQEIYKD 268 (269)
T ss_dssp HHHHHHHHHHHHHSCS-SCCCCHHHHHHHSC
T ss_pred HHHHHHHHHHHhCcCC-CCCcCHHHHHHHhh
Confidence 9999999964 45678 99999999999974
No 20
>1xdk_B RAR-beta, retinoic acid receptor, beta; nuclear receptor, coactivator, ligand, hormone/growth factor receptor complex; HET: REA; 2.90A {Mus musculus} SCOP: a.123.1.1
Probab=99.95 E-value=1.1e-27 Score=178.83 Aligned_cols=106 Identities=22% Similarity=0.195 Sum_probs=102.6
Q ss_pred hHHhhccccCCHHHHHHHHHHHhhcCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHhchhhhcC
Q psy16764 2 FQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSI 81 (113)
Q Consensus 2 f~~~l~~L~ld~~E~~~Lkai~l~~~~~g~~~~~l~~~~~Ve~lqe~~~~aL~~~~~~~~p~~~~Rf~kLLl~Lp~Lr~l 81 (113)
|..+|++|++|++||+|||||+||+||+ +|+.+..+|+.+|++++.+|.+||..+||++|.||++||++||+||++
T Consensus 160 ~~~~l~~L~ld~~E~~lLkAivL~~pd~----~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~L~~Lr~l 235 (303)
T 1xdk_B 160 FANQLLPLEMDDTETGLLSAICLICGDR----QDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSI 235 (303)
T ss_dssp HHHHHGGGCCCHHHHHHHHHHHHSCSCS----SSCSSHHHHHHHTHHHHHHHHHHHHHHCTTCTTHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhCCCC----CCCccHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999998 799999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhhhcccccCCCCcHHHHHHHHHhCC
Q psy16764 82 PSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 112 (113)
Q Consensus 82 ~~~~~e~L~f~~~~g~~~~i~~Ll~eml~~~ 112 (113)
++.++++++|.+.+| ++++++|+.|||+++
T Consensus 236 ~~~~~e~l~~~~~~~-~~~~~~Ll~Eml~~~ 265 (303)
T 1xdk_B 236 SAKGAERVITLKMEI-PGSMPPLIQEMLENS 265 (303)
T ss_dssp HHHHHHHHHHHTTTC-SSCCCHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcC-CCCccHHHHHHHcCC
Confidence 999999999999999 999999999999864
No 21
>1osh_A BIle acid receptor; nuclear receptor, ligand binding domain, transcription; HET: FEX; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 3l1b_A* 3bej_A* 3fli_A* 3hc5_A* 3rvf_A* 3dct_A* 3dcu_A* 3ruu_A* 3rut_A* 3olf_A* 3okh_A* 3fxv_A* 3oki_A* 3omk_A* 3omm_A* 3oof_A* 3ook_A* 3hc6_A* 3p89_A* 3p88_A* ...
Probab=99.95 E-value=1.3e-27 Score=171.90 Aligned_cols=104 Identities=15% Similarity=0.206 Sum_probs=100.1
Q ss_pred hHHhhccccCCHHHHHHHHHHHhhcCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHhchhhhcC
Q psy16764 2 FQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSI 81 (113)
Q Consensus 2 f~~~l~~L~ld~~E~~~Lkai~l~~~~~g~~~~~l~~~~~Ve~lqe~~~~aL~~~~~~~~p~~~~Rf~kLLl~Lp~Lr~l 81 (113)
|..+|++|++|++||+|||||++|+||+ +|+.+...|+++|+++..+|.+||..+||++|.||++||++||+||++
T Consensus 128 ~~~~l~~L~ld~~E~~lLkaivL~~pd~----~gL~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~Rf~~LL~~L~~Lr~l 203 (232)
T 1osh_A 128 FYKSIGELKMTQEEYALLTAIVILSPDR----QYIKDREAVEKLQEPLLDVLQKLCKIHQPENPQHFACLLGRLTELRTF 203 (232)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHTCTTC----TTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHTH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCC----CCCCChHHHHHHHHHHHHHHHHHHHHHCCCchhHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999998 789999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhhhcccccCCCCcHHHHHHHHHhC
Q psy16764 82 PSLVLEELFFRNIIGHNTTIKKTIWHMYKN 111 (113)
Q Consensus 82 ~~~~~e~L~f~~~~g~~~~i~~Ll~eml~~ 111 (113)
+..++|.++|.+. | ++++++|+.||++.
T Consensus 204 ~~~~~e~l~~~k~-~-~~~~~~Ll~Em~~~ 231 (232)
T 1osh_A 204 NHHHAEMLMSWRV-N-DHKFTPLLCEIWDV 231 (232)
T ss_dssp HHHHHHHHHHHHH-T-TCCCCHHHHHHHTC
T ss_pred HHHHHHHHHHHHh-C-CCCCChHHHHHhcC
Confidence 9999999999997 8 89999999999975
No 22
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=99.94 E-value=1.2e-27 Score=185.74 Aligned_cols=105 Identities=14% Similarity=0.127 Sum_probs=99.9
Q ss_pred hHHhhccccCCHHHHHHHHHHHhhcCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHhchhhhcC
Q psy16764 2 FQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSI 81 (113)
Q Consensus 2 f~~~l~~L~ld~~E~~~Lkai~l~~~~~g~~~~~l~~~~~Ve~lqe~~~~aL~~~~~~~~p~~~~Rf~kLLl~Lp~Lr~l 81 (113)
|+.+|+.|++|++||+|||||+||+||+ +|+.+..+|+++|++++.||++|+..+||+++.||++||++||+||++
T Consensus 312 f~~~l~~L~ld~~E~alLkAivLf~pD~----~gL~~~~~Ve~lQe~~~~aL~~yi~~~~p~~~~rf~kLLl~Lp~LR~i 387 (419)
T 3dzy_D 312 FAVKFNALELDDSDLAIFIAVIILSGDR----PGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQI 387 (419)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHSCTTS----TTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999 799999999999999999999999999999999999999999999999
Q ss_pred Chhhhhhhhcc-cccCCCCcHHHHHHHHHhC
Q psy16764 82 PSLVLEELFFR-NIIGHNTTIKKTIWHMYKN 111 (113)
Q Consensus 82 ~~~~~e~L~f~-~~~g~~~~i~~Ll~eml~~ 111 (113)
++.+++.+++. +..| ++++++||.|||+.
T Consensus 388 ~~~~~~~l~~~k~~~~-~~~l~~Ll~Em~~d 417 (419)
T 3dzy_D 388 VTEHVQLLQVIKKTET-DMSLHPLLQEIYKD 417 (419)
T ss_dssp HHHHHHHHHHHTTSCS-CCCCCHHHHHHHTT
T ss_pred HHHHHHHHHHhhccCC-CCCccHHHHHHHHh
Confidence 99999999544 5678 89999999999975
No 23
>3b0t_A Vitamin D3 receptor; nuclear receptor, transcription, gene regulation; HET: MCZ; 1.30A {Homo sapiens} PDB: 3a40_X* 1s0z_A* 1s19_A* 2ham_A* 2har_A* 2has_A* 1txi_A* 2hb8_A* 2hb7_A* 3a3z_X* 3a78_A* 3auq_A* 3aur_A* 3ax8_A* 3cs4_A* 3cs6_A* 1ie9_A* 1db1_A* 1ie8_A* 3kpz_A* ...
Probab=99.94 E-value=8e-28 Score=175.16 Aligned_cols=104 Identities=18% Similarity=0.175 Sum_probs=99.7
Q ss_pred hHHhhccccCCHHHHHHHHHHHhhcCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHhhCC--CcchHHHHHHHhchhhh
Q psy16764 2 FQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYP--SQPTRFCKIQLILPRLK 79 (113)
Q Consensus 2 f~~~l~~L~ld~~E~~~Lkai~l~~~~~g~~~~~l~~~~~Ve~lqe~~~~aL~~~~~~~~p--~~~~Rf~kLLl~Lp~Lr 79 (113)
|..+|++|++|++||+|||||++|+||+ +|+.+..+|+++|+++..+|.+||..+|| ++|.||++||++||+||
T Consensus 147 ~~~~l~~L~ld~~E~~lLkAivL~~pd~----~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~~Rf~~LL~~L~~Lr 222 (254)
T 3b0t_A 147 FQVGLKKLNLHEEEHVLLMAICIVSPDR----PGVQDAALIEAIQDRLSNTLQTYIRCRHPPPGSHLLYAKMIQKLADLR 222 (254)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHSCSCS----TTCSCHHHHHHHHHHHHHHHHHHHHHHCCTTTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCc----cCCcCHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHhHHHH
Confidence 7889999999999999999999999998 78999999999999999999999999999 88999999999999999
Q ss_pred cCChhhhhhhhcccc--cCCCCcHHHHHHHHHh
Q psy16764 80 SIPSLVLEELFFRNI--IGHNTTIKKTIWHMYK 110 (113)
Q Consensus 80 ~l~~~~~e~L~f~~~--~g~~~~i~~Ll~eml~ 110 (113)
++++.++|+++|.+. .| ++++++|+.||++
T Consensus 223 ~l~~~~~e~l~~~~~~~~~-~~~~~~Ll~Em~~ 254 (254)
T 3b0t_A 223 SLNEEHSKQYRCLSFQPEC-SMKLTPLVLEVFG 254 (254)
T ss_dssp HHHHHHHHHHHHHTTSTTH-HHHSCHHHHHHHC
T ss_pred HHHHHHHHHHHHHhccccC-CCCCChHHHHhcC
Confidence 999999999999999 77 7889999999984
No 24
>2p1t_A Retinoic acid receptor RXR-alpha; protein-ligand complex, hormone receptor; HET: 3TN; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 1mvc_A* 1mzn_A* 1mv9_A* 2p1u_A* 2p1v_A* 2zxz_A* 2zy0_A* 3fug_A* 3nsp_A 3nsq_A* 3r29_A 3r2a_A* 3r5m_A* 3e94_A* 3kwy_A* 1fby_A* 3uvv_B* 3fc6_A* 1rdt_A* 3fal_A* ...
Probab=99.94 E-value=1.4e-27 Score=172.27 Aligned_cols=106 Identities=26% Similarity=0.399 Sum_probs=102.6
Q ss_pred hHHhhccccCCHHHHHHHHHHHhhcCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHhchhhhcC
Q psy16764 2 FQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSI 81 (113)
Q Consensus 2 f~~~l~~L~ld~~E~~~Lkai~l~~~~~g~~~~~l~~~~~Ve~lqe~~~~aL~~~~~~~~p~~~~Rf~kLLl~Lp~Lr~l 81 (113)
|..+|++|++|++||+|||||++|+|++ +|+.+..+|+++|+++..+|.+|+..+||++|.||++||++||+||++
T Consensus 131 ~~~~l~~L~ld~~E~~~Lkai~l~~pd~----~gl~~~~~ve~~q~~~~~~L~~y~~~~~~~~~~Rf~~LL~~l~~Lr~~ 206 (240)
T 2p1t_A 131 LVSKMRDMQMDKTELGCLRAIVLFNPDS----KGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSI 206 (240)
T ss_dssp THHHHHHTTCCHHHHHHHHHHHHSCTTC----TTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHTTHHHHHHH
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHhcCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999998 689999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhhhcccccCCCCcHHHHHHHHHhCC
Q psy16764 82 PSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 112 (113)
Q Consensus 82 ~~~~~e~L~f~~~~g~~~~i~~Ll~eml~~~ 112 (113)
+..++++++|.+.+| .+++++|+.||++++
T Consensus 207 ~~~~~e~l~~~~~~~-~~~~~~ll~eml~~~ 236 (240)
T 2p1t_A 207 GLKCLEHLFFFKLIG-DTPIDTFLMEMLEAP 236 (240)
T ss_dssp HHHHHHHHHHHHHHC-CSCCCHHHHHHTSCC
T ss_pred HHHHHHHHHHhCcCC-CCchHHHHHHHHcCC
Confidence 999999999999999 999999999999875
No 25
>3oll_A Estrogen receptor beta; steroid binding, phosphorylation, hormone receptor-activator; HET: PTR EST; 1.50A {Homo sapiens} SCOP: a.123.1.1 PDB: 1u3s_A* 1u3q_A* 1x78_A* 1x7b_A* 1x7j_A* 1x76_A* 2yjd_A* 3ols_A* 3omo_A* 3omp_A* 3omq_A* 1u3r_A* 1u9e_A* 1qkm_A* 2giu_A* 1nde_A* 2jj3_A* 2i0g_A* 2qtu_A* 2z4b_A* ...
Probab=99.94 E-value=1.3e-27 Score=172.72 Aligned_cols=106 Identities=12% Similarity=0.071 Sum_probs=98.1
Q ss_pred hHHhhccccCCHHHHHHHHHHHhhcCCCCCcccCCCC-------hhHHHHHHHHHHHHHHHHHHhh---CCCcchHHHHH
Q psy16764 2 FQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTG-------SKFTAAIQGHTQIFLNKYIHTV---YPSQPTRFCKI 71 (113)
Q Consensus 2 f~~~l~~L~ld~~E~~~Lkai~l~~~~~g~~~~~l~~-------~~~Ve~lqe~~~~aL~~~~~~~---~p~~~~Rf~kL 71 (113)
|..+|++|++|++||+|||||++|+||+ +|+.+ .++|+.+|+++..+|.+|+..+ +|++|.||++|
T Consensus 123 ~~~~l~~L~ld~~E~~lLkAivL~~pd~----~gLs~~~~~~~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~~~~Rf~~L 198 (240)
T 3oll_A 123 TTSRFRELKLQHKEYLCVKAMILLNSSM----YPLVTATQDADSSRKLAHLLNAVTDALVWVIAKSGISSQQQSMRLANL 198 (240)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHCSCC----CCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHcCCCC----CCcccccchhhHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHH
Confidence 6789999999999999999999999997 56543 5789999999999999999876 46789999999
Q ss_pred HHhchhhhcCChhhhhhhhcccccCCCCcHHHHHHHHHhCC
Q psy16764 72 QLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 112 (113)
Q Consensus 72 Ll~Lp~Lr~l~~~~~e~L~f~~~~g~~~~i~~Ll~eml~~~ 112 (113)
|++||+||+++++++|+++|.+.+| .+++++|+.||++++
T Consensus 199 L~~Lp~Lr~l~~~~~e~l~~~~~~g-~~~~~~Ll~eml~~~ 238 (240)
T 3oll_A 199 LMLLSHVRHASNKGMEHLLNMKCKN-VVPVYDLLLEMLNAH 238 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-SSCCCHHHHHHHHHC
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHhcc
Confidence 9999999999999999999999999 999999999999876
No 26
>2hc4_A Vitamin D receptor; alpha helical sandwich, gene regulation; HET: VDX; 2.20A {Danio rerio} PDB: 2hbh_A* 2hcd_A* 3dr1_A* 3o1d_A* 3o1e_A*
Probab=99.94 E-value=2.6e-27 Score=177.04 Aligned_cols=106 Identities=17% Similarity=0.146 Sum_probs=101.5
Q ss_pred hHHhhccccCCHHHHHHHHHHHhhcCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHhchhhhcC
Q psy16764 2 FQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSI 81 (113)
Q Consensus 2 f~~~l~~L~ld~~E~~~Lkai~l~~~~~g~~~~~l~~~~~Ve~lqe~~~~aL~~~~~~~~p~~~~Rf~kLLl~Lp~Lr~l 81 (113)
|..+|++|++|++||+|||||+||+|++ +++.+..+|+++|++++.+|.+||..+||++|.||++||++||+||++
T Consensus 193 ~~~~l~~L~ld~~E~alLkAIvLfnpd~----~gL~~~~~Ve~lqe~~~~aL~~y~~~~~p~~~~RF~~LLl~L~~Lr~l 268 (302)
T 2hc4_A 193 FQVGLKKLKLHEEEHVLLMAICLLSPDR----PGVQDHVRIEALQDRLCDVLQAYIRIQHPGGRLLYAKMIQKLADLRSL 268 (302)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHTCSCS----TTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCC----CCCcCHHHHHHHHHHHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHH
Confidence 7789999999999999999999999998 799999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhhhcccccCCC--CcHHHHHHHHHhCC
Q psy16764 82 PSLVLEELFFRNIIGHN--TTIKKTIWHMYKNA 112 (113)
Q Consensus 82 ~~~~~e~L~f~~~~g~~--~~i~~Ll~eml~~~ 112 (113)
++.+++++++.+..| . +++++|+.||+.++
T Consensus 269 ~~~~~e~l~~~~~~~-~~~~~~~~Ll~Em~~~~ 300 (302)
T 2hc4_A 269 NEEHSKQYRSLSFQP-EHSMQLTPLVLEVFGSE 300 (302)
T ss_dssp HHHHHHHHHHHHHCH-HHHTTSCHHHHHHSSSC
T ss_pred HHHHHHHHHHhhccC-CCCCCccHHHHHHHcCC
Confidence 999999999999986 5 78999999999865
No 27
>3ipq_A Oxysterols receptor LXR-alpha; LXR homodimer, LXR signaling, alternative DNA-binding, metal-binding, nucleus, polymorphism, receptor transcription; HET: 965; 2.00A {Homo sapiens} PDB: 3ips_A* 3ipu_A* 3fc6_B* 3fal_B* 1uhl_B* 2acl_B* 1upv_A* 1upw_A* 1p8d_A* 1pq9_A* 1pq6_A* 1pqc_A* 3kfc_A* 4dk7_A* 4dk8_A* 3l0e_A*
Probab=99.94 E-value=3.7e-27 Score=174.51 Aligned_cols=105 Identities=14% Similarity=0.192 Sum_probs=100.5
Q ss_pred hHHhhccccCCHHHHHHHHHHHhhcCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHhchhhhcC
Q psy16764 2 FQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSI 81 (113)
Q Consensus 2 f~~~l~~L~ld~~E~~~Lkai~l~~~~~g~~~~~l~~~~~Ve~lqe~~~~aL~~~~~~~~p~~~~Rf~kLLl~Lp~Lr~l 81 (113)
|..+|++|++|++||+|||||++|+||+ +|+.+...|+++|+++..+|.+||..+||++|.||++||++||+||++
T Consensus 178 ~~~~l~~L~ld~~E~~lLkAIvL~npd~----~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~Lp~Lr~l 253 (283)
T 3ipq_A 178 FSRAMNELQLNDAEFALLIAISIFSADR----PNVQDQLQVERLQHTYVEALHAYVSIHHPHDRLMFPRMLMKLVSLRTL 253 (283)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHTCTTS----TTCSCHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCC----CCCCcHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHH
Confidence 7789999999999999999999999998 799999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhhhcccccCCCCcHHHHHHHHHhCC
Q psy16764 82 PSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 112 (113)
Q Consensus 82 ~~~~~e~L~f~~~~g~~~~i~~Ll~eml~~~ 112 (113)
++.++|++||.+..| .++++|+.||++..
T Consensus 254 ~~~~~e~l~~~k~~~--~~~~~Ll~Em~~~~ 282 (283)
T 3ipq_A 254 SSVHSEQVFALRLQD--KKLPPLLSEIWDVH 282 (283)
T ss_dssp HHHHHHHHHHHHHTT--CCCCHHHHHHHCC-
T ss_pred HHHHHHHHhhhcCCC--CCCChHHHHHhcCC
Confidence 999999999999998 59999999999864
No 28
>1lbd_A RXR_LBD, retinoid X receptor; transcription factor, nuclear receptor, structural proteomic europe, spine, structural genomics; 2.70A {Homo sapiens} SCOP: a.123.1.1 PDB: 1z5x_U* 2q60_A
Probab=99.94 E-value=1.9e-27 Score=175.52 Aligned_cols=106 Identities=26% Similarity=0.399 Sum_probs=102.7
Q ss_pred hHHhhccccCCHHHHHHHHHHHhhcCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHhchhhhcC
Q psy16764 2 FQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSI 81 (113)
Q Consensus 2 f~~~l~~L~ld~~E~~~Lkai~l~~~~~g~~~~~l~~~~~Ve~lqe~~~~aL~~~~~~~~p~~~~Rf~kLLl~Lp~Lr~l 81 (113)
|..+|++|++|.+||+|||||++|+|++ +++.+..+|+++|++++.+|.+|+..+||++|.||++||++||.||++
T Consensus 173 ~~~~l~~L~ld~~E~~lLkaivL~~pd~----~gLs~~~~v~~lq~~~~~~L~~y~~~~~~~~~~Rf~~LL~~L~~Lr~~ 248 (282)
T 1lbd_A 173 LVSKMRDMQMDKTELGCLRAIVLFNPDS----KGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSI 248 (282)
T ss_dssp HHHHTTTTCCCHHHHHHHHHHHHSCTTC----TTCSCHHHHHHHHHHHHHHHHHHHHHHSCCSTTTHHHHHTTHHHHHHH
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHcCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999998 789999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhhhcccccCCCCcHHHHHHHHHhCC
Q psy16764 82 PSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 112 (113)
Q Consensus 82 ~~~~~e~L~f~~~~g~~~~i~~Ll~eml~~~ 112 (113)
+..++|+++|.+++| .+++++++.||+.++
T Consensus 249 ~~~~~e~l~~~~~~~-~~~i~~ll~eml~~~ 278 (282)
T 1lbd_A 249 GLKCLEHLFFFKLIG-DTPIDTFLMEMLEAP 278 (282)
T ss_dssp HHHHHTTTHHHHHHH-HHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHhccCC-CCcHHHHHHHHHcCC
Confidence 999999999999999 999999999999875
No 29
>1nq7_A Nuclear receptor ROR-beta; ligand-binding domain, retinoids, retinoic acid, synthetic ligand, antagonist, transcription; HET: ARL; 1.50A {Rattus norvegicus} SCOP: a.123.1.1 PDB: 1k4w_A* 1n4h_A*
Probab=99.94 E-value=2.8e-27 Score=171.74 Aligned_cols=103 Identities=14% Similarity=0.137 Sum_probs=98.8
Q ss_pred hHHhhccccCCHHHHHHHHHHHhhcCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHhchhhhcC
Q psy16764 2 FQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSI 81 (113)
Q Consensus 2 f~~~l~~L~ld~~E~~~Lkai~l~~~~~g~~~~~l~~~~~Ve~lqe~~~~aL~~~~~~~~p~~~~Rf~kLLl~Lp~Lr~l 81 (113)
|..+|++|++|++||+|||||++|+||+ +|+.+..+|+++|+++..+|.+||..+||++| ||++||++||+||++
T Consensus 138 ~~~~l~~L~ld~~E~~lLkAivL~~pd~----~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~-Rf~~LL~~L~~Lr~l 212 (244)
T 1nq7_A 138 FAKNLCSLQLTEEEIALFSSAVLISPDR----AWLLEPRKVQKLQEKIYFALQHVIQKNHLDDE-TLAKLIAKIPTITAV 212 (244)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHSCTTS----TTCSCHHHHHHHHHHHHHHHHHHHHHHCSCTT-HHHHHHHTHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHcCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHHH
Confidence 6889999999999999999999999998 79999999999999999999999999999998 999999999999999
Q ss_pred ChhhhhhhhcccccCCCC----cHHHHHHHHHh
Q psy16764 82 PSLVLEELFFRNIIGHNT----TIKKTIWHMYK 110 (113)
Q Consensus 82 ~~~~~e~L~f~~~~g~~~----~i~~Ll~eml~ 110 (113)
++.++++++|.+..| .. ++++|+.||+.
T Consensus 213 ~~~~~e~l~~~~~~~-~~~~~~~~~~Ll~Em~~ 244 (244)
T 1nq7_A 213 CNLHGEKLQVFKQSH-PDIVNTLFPPLYKELFN 244 (244)
T ss_dssp HHHHHHHHHHHHHHC-HHHHHHTSCHHHHHHHC
T ss_pred HHHHHHHHHHHHhhC-cccccCCCChHHHHhhC
Confidence 999999999999999 65 89999999984
No 30
>1xvp_B Orphan nuclear receptor NR1I3; CAR, RXR, citco, SRC1, DNA binding protein; HET: F15 CID; 2.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xv9_B* 1xnx_A* 1xls_E*
Probab=99.94 E-value=3.3e-27 Score=171.19 Aligned_cols=102 Identities=18% Similarity=0.183 Sum_probs=96.4
Q ss_pred hHHhhccccCCHHHHHHHHHHHhhcCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHh--hCCCcchHHHHHHHhchhhh
Q psy16764 2 FQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHT--VYPSQPTRFCKIQLILPRLK 79 (113)
Q Consensus 2 f~~~l~~L~ld~~E~~~Lkai~l~~~~~g~~~~~l~~~~~Ve~lqe~~~~aL~~~~~~--~~p~~~~Rf~kLLl~Lp~Lr 79 (113)
|..+|++|++|++||+|||||++|+||+ +|+.+..+|+++|++++.+|.+||.. .+|++|.||++||++||+||
T Consensus 143 ~~~~l~~L~ld~~E~~lLkAivL~~pd~----~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~~rf~~LL~~L~~Lr 218 (246)
T 1xvp_B 143 FHGTLRKLQLQEPEYVLLAAMALFSPDR----PGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLYAKLLGLLAELR 218 (246)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHSCSSS----TTCSCHHHHHHHHHHHHHHHHHHHHTCSSCCSCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHH
Confidence 6789999999999999999999999998 79999999999999999999999994 46889999999999999999
Q ss_pred cCChhhhhhhhcccccCCCCcHHHHHHHHHh
Q psy16764 80 SIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 110 (113)
Q Consensus 80 ~l~~~~~e~L~f~~~~g~~~~i~~Ll~eml~ 110 (113)
++++.+++++++. .| .+++++|+.||++
T Consensus 219 ~i~~~~~e~l~~~--~~-~~~~~~Ll~Em~~ 246 (246)
T 1xvp_B 219 SINEAYGYQIQHI--QG-LSAMMPLLQEICS 246 (246)
T ss_dssp HHHHHHHHHHHHS--TT-HHHHCHHHHHHTC
T ss_pred HHHHHHHHHHHHH--hC-CCCccHHHHHhcC
Confidence 9999999999995 69 9999999999984
No 31
>1pdu_A DHR38, nuclear hormone receptor HR38; nuclear receptor, ligand-binding domain, hormone/growth factor receptor complex; 2.30A {Drosophila melanogaster} SCOP: a.123.1.1
Probab=99.94 E-value=1.8e-27 Score=173.12 Aligned_cols=105 Identities=18% Similarity=0.140 Sum_probs=99.7
Q ss_pred hHHhhccccCCHHHHHHHHHHHhhcCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHhhCC--CcchHHHHHHHhchhhh
Q psy16764 2 FQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYP--SQPTRFCKIQLILPRLK 79 (113)
Q Consensus 2 f~~~l~~L~ld~~E~~~Lkai~l~~~~~g~~~~~l~~~~~Ve~lqe~~~~aL~~~~~~~~p--~~~~Rf~kLLl~Lp~Lr 79 (113)
|..+|++|++|++||+|||||++|+ ++ +|+.+..+|+++|++++.+|.+||..+|| ++|.||++||++||+||
T Consensus 135 ~~~~l~~L~ld~~E~~lLkAIvLfn-d~----~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~~~Rf~~LL~~L~~Lr 209 (244)
T 1pdu_A 135 FSRSLHNLEIDISAFACLCALTLIT-ER----HGLREPKKVEQLQMKIIGSLRDHVTYNAEAQKKQHYFSRLLGKLPELR 209 (244)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHSS-CC----TTCSCHHHHHHHHHHHHHHHHHHHHHCHHHHTSTTHHHHHHTHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhC-CC----CCCccHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHH
Confidence 6889999999999999999999998 55 68999999999999999999999999887 57899999999999999
Q ss_pred cCChhhhhhhhcccccCCCCcHHHHHHHHHhCC
Q psy16764 80 SIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 112 (113)
Q Consensus 80 ~l~~~~~e~L~f~~~~g~~~~i~~Ll~eml~~~ 112 (113)
+++++++|++||.+.+| .+++++|+.||+.+.
T Consensus 210 ~l~~~~~e~l~~~~~~g-~~~~~~Ll~Eml~~~ 241 (244)
T 1pdu_A 210 SLSVQGLQRIFYLKLED-LVPAPALIENMFVTT 241 (244)
T ss_dssp HHHHHHHHHHHHHHHHC-SSCCCHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHccCC-CCCchHHHHHHHhCC
Confidence 99999999999999999 999999999999875
No 32
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=99.94 E-value=2.3e-27 Score=186.30 Aligned_cols=106 Identities=26% Similarity=0.399 Sum_probs=100.8
Q ss_pred hHHhhccccCCHHHHHHHHHHHhhcCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHhchhhhcC
Q psy16764 2 FQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSI 81 (113)
Q Consensus 2 f~~~l~~L~ld~~E~~~Lkai~l~~~~~g~~~~~l~~~~~Ve~lqe~~~~aL~~~~~~~~p~~~~Rf~kLLl~Lp~Lr~l 81 (113)
|..+|++|++|++||+|||||++|+||+ +++.+..+|+++|++++.+|.+|+..+||+++.||++||++||+||++
T Consensus 358 lv~~l~~L~ld~~E~~lLkAIvLfnpd~----~gL~~~~~Ve~lQe~~~~aL~~Y~~~~~p~~p~Rf~kLLl~Lp~LRsi 433 (467)
T 3dzy_A 358 LVSKMRDMQMDKTELGCLRAIVLFNPDS----KGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSI 433 (467)
T ss_dssp THHHHHHHTCCHHHHHHHHHHHHSCTTS----TTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHTHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCcCC----CCCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999998 799999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhhhcccccCCCCcHHHHHHHHHhCC
Q psy16764 82 PSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 112 (113)
Q Consensus 82 ~~~~~e~L~f~~~~g~~~~i~~Ll~eml~~~ 112 (113)
+++++|++||.+++| .++|++|+.|||+++
T Consensus 434 ~~~~~E~l~~~kl~g-~v~i~~Ll~EMl~a~ 463 (467)
T 3dzy_A 434 GLKCLEHLFFFKLIG-DTPIDTFLMEMLEAP 463 (467)
T ss_dssp HHHHHHTTTTTSTTS-CCCCCSHHHHCC---
T ss_pred HHHHHHHHHHhhccC-CccHHHHHHHHHcCC
Confidence 999999999999999 999999999999875
No 33
>1nrl_A Orphan nuclear receptor PXR; PXR, xenobiotic, SRC-1, ligand binding domain, transcription; HET: SRL; 2.00A {Homo sapiens} SCOP: a.123.1.1 PDB: 1ilh_A* 1ilg_A* 1m13_A* 2qnv_A* 3r8d_A* 3ctb_A 3ctc_A 3hvl_A* 1skx_A* 2o9i_A*
Probab=99.94 E-value=4.8e-27 Score=176.83 Aligned_cols=105 Identities=20% Similarity=0.220 Sum_probs=101.0
Q ss_pred hHHhhccccCCHHHHHHHHHHHhhcCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHhhCC--CcchHHHHHHHhchhhh
Q psy16764 2 FQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYP--SQPTRFCKIQLILPRLK 79 (113)
Q Consensus 2 f~~~l~~L~ld~~E~~~Lkai~l~~~~~g~~~~~l~~~~~Ve~lqe~~~~aL~~~~~~~~p--~~~~Rf~kLLl~Lp~Lr 79 (113)
|..+|++|++|++||+|||||+||+||+ +++.+..+|+++|++++.+|.+||..+|| ++|.||++||++||+||
T Consensus 208 ~~~~l~~L~ld~~E~alLkAIvLfnpd~----~gL~~~~~Ve~lqe~~~~aL~~y~~~~~p~~~~~~RF~kLLl~Lp~LR 283 (316)
T 1nrl_A 208 FHYMLKKLQLHEEEYVLMQAISLFSPDR----PGVLQHRVVDQLQEQFAITLKSYIECNRPQPAHRFLFLKIMAMLTELR 283 (316)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHTCTTS----TTCSCHHHHHHHHHHHHHHHHHHHHHHCCSGGGTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCCC----CCCccHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHH
Confidence 7889999999999999999999999998 79999999999999999999999999999 78999999999999999
Q ss_pred cCChhhhhhhhcccccCCCCcHHHHHHHHHhCC
Q psy16764 80 SIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 112 (113)
Q Consensus 80 ~l~~~~~e~L~f~~~~g~~~~i~~Ll~eml~~~ 112 (113)
++++.++|+++|.+.+| . ++++|+.||+.++
T Consensus 284 ~l~~~~~e~l~~~k~~~-~-~i~~Ll~Eml~~~ 314 (316)
T 1nrl_A 284 SINAQHTQRLLRIQDIH-P-FATPLMQELFGIT 314 (316)
T ss_dssp HHHHHHHHHHHHHHHHS-C-CCCHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhcC-C-chHHHHHHHHcCC
Confidence 99999999999999999 6 9999999999875
No 34
>2o4j_A Vitamin D3 receptor; nuclear receptor-ligand complex, hormone/growth factor receptor complex; HET: VD4; 1.74A {Rattus norvegicus} SCOP: a.123.1.1 PDB: 1rk3_A* 1rjk_A* 1rkh_A* 1rkg_A* 2o4r_A*
Probab=99.93 E-value=5.9e-27 Score=174.28 Aligned_cols=106 Identities=20% Similarity=0.205 Sum_probs=101.0
Q ss_pred hHHhhccccCCHHHHHHHHHHHhhcCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHhhCC--CcchHHHHHHHhchhhh
Q psy16764 2 FQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYP--SQPTRFCKIQLILPRLK 79 (113)
Q Consensus 2 f~~~l~~L~ld~~E~~~Lkai~l~~~~~g~~~~~l~~~~~Ve~lqe~~~~aL~~~~~~~~p--~~~~Rf~kLLl~Lp~Lr 79 (113)
|..+|++|++|++||+|||||+||+||+ +|+.+..+|+++|+++..+|.+||..+|| ++|.||++||++||+||
T Consensus 150 ~~~~l~~L~ld~~E~~lLkAIvLfnpd~----~gL~~~~~Ve~lq~~~~~aL~~y~~~~~p~~~~~~Rf~~LL~~L~~Lr 225 (292)
T 2o4j_A 150 FQVGLKKLNLHEEEHVLLMAICIVSPDR----PGVQDAKLVEAIQDRLSNTLQTYIRCRHPPPGSHQLYAKMIQKLADLR 225 (292)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHSCTTS----TTCSCHHHHHHHHHHHHHHHHHHHHHHSCTTTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCC----CCCccHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHH
Confidence 7889999999999999999999999998 79999999999999999999999999999 88999999999999999
Q ss_pred cCChhhhhhhhccccc--CCCCcHHHHHHHHHhCC
Q psy16764 80 SIPSLVLEELFFRNII--GHNTTIKKTIWHMYKNA 112 (113)
Q Consensus 80 ~l~~~~~e~L~f~~~~--g~~~~i~~Ll~eml~~~ 112 (113)
++++.+++++++.+.+ | ++++++|+.||+.++
T Consensus 226 ~l~~~~~e~l~~~~~~~~~-~~~~~~Ll~Eml~~~ 259 (292)
T 2o4j_A 226 SLNEEHSKQYRSLSFQPEN-SMKLTPLVLEVFGNE 259 (292)
T ss_dssp HHHHHHHHHHHHHHHSHHH-HTTSCHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhhccccC-CCChhHHHHHHHcCC
Confidence 9999999999999994 6 789999999999864
No 35
>1n83_A Nuclear receptor ROR-alpha; three-layered alpha helical sandwich, transcription regulation, nuclear protein, DNA binding, lipid binding protein; HET: CLR; 1.63A {Homo sapiens} SCOP: a.123.1.1 PDB: 1s0x_A*
Probab=99.93 E-value=6.3e-27 Score=172.47 Aligned_cols=105 Identities=11% Similarity=0.107 Sum_probs=97.7
Q ss_pred hHHhhccccCCHHHHHHHHHHHhhcCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHhchhhhcC
Q psy16764 2 FQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSI 81 (113)
Q Consensus 2 f~~~l~~L~ld~~E~~~Lkai~l~~~~~g~~~~~l~~~~~Ve~lqe~~~~aL~~~~~~~~p~~~~Rf~kLLl~Lp~Lr~l 81 (113)
|..+|++|++|++||+|||||++|+||+ +|+.+..+|+++|+++..+|.+||..+|| +|.||++||++||+||++
T Consensus 153 ~~~~l~~L~ld~~E~~lLkAivLfnpd~----~gL~~~~~ve~lq~~~~~aL~~y~~~~~~-~~~Rf~~LL~~L~~Lr~l 227 (270)
T 1n83_A 153 FGKSLCSMHLTEDEIALFSAFVLMSADR----SWLQEKVKIEKLQQKIQLALQHVLQKNHR-EDGILTKLICKVSTLRAL 227 (270)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHSCTTS----TTCSCHHHHHHHHHHHHHHHHHHHHHHCT-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHhCC-chhHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999998 79999999999999999999999999998 689999999999999999
Q ss_pred ChhhhhhhhcccccCCC----CcHHHHHHHHHhCC
Q psy16764 82 PSLVLEELFFRNIIGHN----TTIKKTIWHMYKNA 112 (113)
Q Consensus 82 ~~~~~e~L~f~~~~g~~----~~i~~Ll~eml~~~ 112 (113)
++++++++++.+.+| . +++++|+.||+.++
T Consensus 228 ~~~~~e~l~~~~~~~-~~~~~~~~~~Ll~Em~~~~ 261 (270)
T 1n83_A 228 CGRHTEKLMAFKAIY-PDIVRLHFPPLYKELFTSE 261 (270)
T ss_dssp HHHHHHHHHHHHHHC-HHHHHHHSCHHHHHHC---
T ss_pred HHHHHHHHHHHHhcC-cccccCCcCHHHHHHhCCC
Confidence 999999999999998 6 48999999999864
No 36
>1xpc_A Estrogen receptor; nuclear receptor, transcription factor, ER-alpha, antagonist hormone-growth factor receptor complex; HET: AIT; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 1sj0_A* 1xp1_A* 1xp9_A* 1xp6_A* 1yim_A* 1yin_A* 3ert_A* 1r5k_A* 3erd_A* 1l2i_A* 2iok_A* 1a52_A* 2ouz_A* 1ere_A* 1err_A* 2qxs_A* 3q95_A* 3q97_A* 2b1z_A* 1zky_A* ...
Probab=99.93 E-value=5.8e-27 Score=170.22 Aligned_cols=110 Identities=13% Similarity=0.119 Sum_probs=99.0
Q ss_pred hHHhhccccCCHHHHHHHHHHHhhcCCCCC----cccCCCChhHHHHHHHHHHHHHHHHHHhhC---CCcchHHHHHHHh
Q psy16764 2 FQTELTMLRIVTEENSNLEIRNAYTSRRGS----RVRFKTGSKFTAAIQGHTQIFLNKYIHTVY---PSQPTRFCKIQLI 74 (113)
Q Consensus 2 f~~~l~~L~ld~~E~~~Lkai~l~~~~~g~----~~~~l~~~~~Ve~lqe~~~~aL~~~~~~~~---p~~~~Rf~kLLl~ 74 (113)
|..+|++|++|.+||+|||||++|+|++.. ..+|+.+..+|+++|+++..+|.+|+..++ |++|.||++||++
T Consensus 125 ~~~~l~~L~ld~~E~~lLkAivL~~pd~~~ls~~~~~gl~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~~~Rf~~LL~~ 204 (248)
T 1xpc_A 125 TSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLI 204 (248)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTTTTCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHcCCcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCCCCcchhhHHHHHHHH
Confidence 678999999999999999999999998610 013456789999999999999999999875 5778999999999
Q ss_pred chhhhcCChhhhhhhhcccccCCCCcHHHHHHHHHhCC
Q psy16764 75 LPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 112 (113)
Q Consensus 75 Lp~Lr~l~~~~~e~L~f~~~~g~~~~i~~Ll~eml~~~ 112 (113)
||+||++++.++|+++|.+.+| .+++++|+.||++++
T Consensus 205 L~~Lr~~~~~~~e~l~~~~~~~-~~~~~~Ll~eml~~~ 241 (248)
T 1xpc_A 205 LSHIRHMSNKGMEHLYSMKCKN-VVPLYDLLLEMLDAH 241 (248)
T ss_dssp HHHHHHHHHHHHHHHTTSSSCC-SSCHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHhCC
Confidence 9999999999999999999999 999999999999875
No 37
>2r40_D Ecdysone receptor, 20-hydroxy-ecdysone receptor; nuclear receptor ligand-binding domain, anti-parallel alpha- sandwich, ecdysone receptor, ECR, gene regulation; HET: FLC 20E EPH; 2.40A {Heliothis virescens} SCOP: a.123.1.1 PDB: 1r1k_D* 3ixp_D* 1r20_D*
Probab=99.93 E-value=2e-26 Score=169.28 Aligned_cols=104 Identities=14% Similarity=0.071 Sum_probs=99.3
Q ss_pred hHHhhccccCCHHHHHHHHHHHhhcCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHhhC---CCcchHHHHHHHhchhh
Q psy16764 2 FQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVY---PSQPTRFCKIQLILPRL 78 (113)
Q Consensus 2 f~~~l~~L~ld~~E~~~Lkai~l~~~~~g~~~~~l~~~~~Ve~lqe~~~~aL~~~~~~~~---p~~~~Rf~kLLl~Lp~L 78 (113)
|..+|++|++|++||+|||||++|+ |+ +++.+..+|+++|+++..||.+||..+| |++|.||++||++||+|
T Consensus 157 ~~~~l~~L~ld~~E~~lLkAivL~n-d~----~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~~~Rf~~LL~~L~~L 231 (266)
T 2r40_D 157 FCRCMYSMMMDNVHYALLTAIVIFS-DR----PGLEQPLLVEEIQRYYLNTLRVYILNQNSASPRCAVIFGKILGILTEI 231 (266)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHTS-CC----TTCSCHHHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccCCHHHHHHHhhheeec-CC----CCCcCHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHH
Confidence 6789999999999999999999999 87 7899999999999999999999999999 88999999999999999
Q ss_pred hcCChhhhhhhhcccccCCCCcHHHHHHHHHhCC
Q psy16764 79 KSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 112 (113)
Q Consensus 79 r~l~~~~~e~L~f~~~~g~~~~i~~Ll~eml~~~ 112 (113)
|++++.+++++++.+.+| .++++|+.||++..
T Consensus 232 r~l~~~~~e~l~~~~~~~--~~~~~Ll~Em~~~~ 263 (266)
T 2r40_D 232 RTLGMQNSNMCISLKLKN--RKLPPFLEEIWDVA 263 (266)
T ss_dssp HHHHHHHHHHHHHHHHTT--CCCCHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHhcC--CCccHHHHHHhCCC
Confidence 999999999999999999 59999999999764
No 38
>1yye_A ER-beta, estrogen receptor beta; ER-beta, nuclear receptor, transcription factor, agonist; HET: 196; 2.03A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yy4_A*
Probab=99.93 E-value=1.2e-26 Score=170.75 Aligned_cols=106 Identities=12% Similarity=0.075 Sum_probs=96.0
Q ss_pred hHHhhccccCCHHHHHHHHHHHhhcCCCCCcccCCC-------ChhHHHHHHHHHHHHHHHHHHhh---CCCcchHHHHH
Q psy16764 2 FQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKT-------GSKFTAAIQGHTQIFLNKYIHTV---YPSQPTRFCKI 71 (113)
Q Consensus 2 f~~~l~~L~ld~~E~~~Lkai~l~~~~~g~~~~~l~-------~~~~Ve~lqe~~~~aL~~~~~~~---~p~~~~Rf~kL 71 (113)
|..+|++|++|.+||+|||||+||+||+ +++. +..+|+++|+++..+|.+||..+ +|++|.||++|
T Consensus 121 ~~~~l~~L~ld~~E~~lLkAIvLfnpd~----~gLs~~~~~~~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~~~~Rf~~L 196 (268)
T 1yye_A 121 TTSRFRELKLQHKEYLCVKAMILLNSSM----YPLVTATQDADSSRKLAHLLNAVTDALVWVIAKSGISSQQQSMRLANL 196 (268)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHTCCC--------------CCHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHcCCCC----CCcccchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhHHHHH
Confidence 6789999999999999999999999987 5664 47899999999999999999987 46789999999
Q ss_pred HHhchhhhcCChhhhhhhhcccccCCCCcHHHHHHHHHhCC
Q psy16764 72 QLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 112 (113)
Q Consensus 72 Ll~Lp~Lr~l~~~~~e~L~f~~~~g~~~~i~~Ll~eml~~~ 112 (113)
|++||+||+++++++++++|.+.+| .+++++|+.||++++
T Consensus 197 Ll~Lp~Lr~i~~~~~e~l~~~~~~g-~~~~~~Ll~Eml~~~ 236 (268)
T 1yye_A 197 LMLLSHVRHASNKGMEHLLNMKCKN-VVPVYDLLLEMLNAH 236 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-CSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCC-CCCHHHHHHHHHhCc
Confidence 9999999999999999999999999 999999999999853
No 39
>1l2j_A Estrogen receptor beta; nuclear receptor, transcription factor, antagonist transcription receptor; HET: ETC; 2.95A {Homo sapiens} SCOP: a.123.1.1
Probab=99.93 E-value=2.7e-26 Score=169.11 Aligned_cols=106 Identities=12% Similarity=0.071 Sum_probs=94.6
Q ss_pred hHHhhccccCCHHHHHHHHHHHhhcCCCCCcccCCCC-------hhHHHHHHHHHHHHHHHHHHhh---CCCcchHHHHH
Q psy16764 2 FQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTG-------SKFTAAIQGHTQIFLNKYIHTV---YPSQPTRFCKI 71 (113)
Q Consensus 2 f~~~l~~L~ld~~E~~~Lkai~l~~~~~g~~~~~l~~-------~~~Ve~lqe~~~~aL~~~~~~~---~p~~~~Rf~kL 71 (113)
|..+|++|++|++||+|||||+||+||. +++.+ ..+|+++|+++..+|.+||..+ +|++|.||++|
T Consensus 149 ~~~~l~~L~ld~~E~~lLkAIvLfnpd~----~gLs~~~~~~~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~~~~Rf~~L 224 (271)
T 1l2j_A 149 TTSRFRELKLQHKEYLCVKAMILLNSSM----YPLVTATQDADSSRKLAHLLNAVTDALVWVIAKSGISSQQQSMRLANL 224 (271)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHC--------CCCCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHcCCCc----CCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHH
Confidence 6789999999999999999999999987 56654 4689999999999999999876 47789999999
Q ss_pred HHhchhhhcCChhhhhhhhcccccCCCCcHHHHHHHHHhCC
Q psy16764 72 QLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 112 (113)
Q Consensus 72 Ll~Lp~Lr~l~~~~~e~L~f~~~~g~~~~i~~Ll~eml~~~ 112 (113)
|++||+||++++.++|+++|.+.+| .+++++|+.||++++
T Consensus 225 Ll~Lp~Lr~i~~~~~e~l~~~~~~g-~~~~~~Ll~Eml~~~ 264 (271)
T 1l2j_A 225 LMLLSHVRHASNKGMEHLLNMKCKN-VVPVYDLLLEMLNAH 264 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCTTS-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCC-CCChHHHHHHHHcCC
Confidence 9999999999999999999999999 999999999999853
No 40
>2ocf_A Estrogen receptor; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens}
Probab=99.93 E-value=1.7e-26 Score=172.47 Aligned_cols=110 Identities=14% Similarity=0.128 Sum_probs=95.9
Q ss_pred hHHhhccccCCHHHHHHHHHHHhhcCCCC----CcccCCCChhHHHHHHHHHHHHHHHHHHhhC---CCcchHHHHHHHh
Q psy16764 2 FQTELTMLRIVTEENSNLEIRNAYTSRRG----SRVRFKTGSKFTAAIQGHTQIFLNKYIHTVY---PSQPTRFCKIQLI 74 (113)
Q Consensus 2 f~~~l~~L~ld~~E~~~Lkai~l~~~~~g----~~~~~l~~~~~Ve~lqe~~~~aL~~~~~~~~---p~~~~Rf~kLLl~ 74 (113)
|..+|++|++|.+||+|||||+||+||+. +.++++.+..+|+.+|+++..+|.+||..++ |++|.||++||++
T Consensus 134 ~~~~l~~L~ld~~Ey~lLkAIvLfnpd~~~LS~~~~~gL~~~~~ve~lqe~~~~aL~~y~~~~~~~~~~~~~RF~~LLl~ 213 (298)
T 2ocf_A 134 TSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLI 213 (298)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHCSCCC-----------CHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHhHhhhCcCHHHHHHHHHHHHcCCCccccccccccccccHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 57899999999999999999999999861 0114678899999999999999999999864 5778999999999
Q ss_pred chhhhcCChhhhhhhhcccccCCCCcHHHHHHHHHhCC
Q psy16764 75 LPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 112 (113)
Q Consensus 75 Lp~Lr~l~~~~~e~L~f~~~~g~~~~i~~Ll~eml~~~ 112 (113)
||+||++++.++|+++|.+.+| .+++++|+.||++++
T Consensus 214 Lp~Lr~i~~~~~e~l~~~kl~g-~~~i~~Ll~Eml~~~ 250 (298)
T 2ocf_A 214 LSHIRHMSNKGMEHLYSMKCKN-VVPLSDLLLEMLDAH 250 (298)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-SSCCCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhcCC-CCcHHHHHHHHHcCC
Confidence 9999999999999999999999 999999999999865
No 41
>3up3_A Acedaf-12; ligand binding domain, nematode, steroid binding protein- transcription complex; HET: XCA; 1.25A {Ancylostoma ceylanicum} PDB: 3up0_A*
Probab=99.92 E-value=2.1e-26 Score=167.58 Aligned_cols=103 Identities=16% Similarity=0.200 Sum_probs=93.2
Q ss_pred hHHhhcc-ccCCHHHHHHHHHHHhhcCCCCCcccCCCCh---hHHHHHHHHHHHHHHHHHHhhC-CCcchHHHHHHHhch
Q psy16764 2 FQTELTM-LRIVTEENSNLEIRNAYTSRRGSRVRFKTGS---KFTAAIQGHTQIFLNKYIHTVY-PSQPTRFCKIQLILP 76 (113)
Q Consensus 2 f~~~l~~-L~ld~~E~~~Lkai~l~~~~~g~~~~~l~~~---~~Ve~lqe~~~~aL~~~~~~~~-p~~~~Rf~kLLl~Lp 76 (113)
|..+|+. |++|++||+|||||++|+|+. |+.++ .+|+++|++++.||.+||..+| |++|.||++||++||
T Consensus 136 ~~~~~~~~L~ld~~E~alLkAivLfsp~~-----gL~~~~~~~~Ve~lQe~~~~aL~~y~~~~~~p~~~~rf~kLL~~Lp 210 (243)
T 3up3_A 136 FFKIFHEDIRSNDLVISMIMLIVLFSPRD-----SITDPEDRRIIARHHEQFSALLNRYLESLYGDDAHQLNEQLPTALR 210 (243)
T ss_dssp HHHTSCHHHHTCHHHHHHHHHHHHSCCCT-----TCCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHhhcCCCC-----CCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHH
Confidence 6788997 999999999999999999875 57655 8999999999999999999776 889999999999999
Q ss_pred hhhcCChhhhhhhhcccccCCCCcHHHHHHHHHhCC
Q psy16764 77 RLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 112 (113)
Q Consensus 77 ~Lr~l~~~~~e~L~f~~~~g~~~~i~~Ll~eml~~~ 112 (113)
+||++++ +++++|+.+. + ..++++|+.||++.+
T Consensus 211 ~LR~i~~-~~e~lf~~k~-~-~~~~~pLl~E~f~~~ 243 (243)
T 3up3_A 211 MLREISA-SSGMLFLGTV-N-TSEAEPLPREFFKVE 243 (243)
T ss_dssp HHHHHHH-TCTTTTTTSC-C-GGGSCHHHHTTSCCC
T ss_pred HHHHHHH-HHHHHHhccc-C-CCCCCcHHHHHhCCC
Confidence 9999999 8999999875 5 679999999998753
No 42
>2nxx_E Ecdysone receptor (ECR, NRH1); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}
Probab=99.92 E-value=1.1e-25 Score=163.72 Aligned_cols=104 Identities=16% Similarity=0.165 Sum_probs=97.6
Q ss_pred hHHhhccccCCHHHHHHHHHHHhhcCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHhhC-CCcchHHHHHHHhchhhhc
Q psy16764 2 FQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVY-PSQPTRFCKIQLILPRLKS 80 (113)
Q Consensus 2 f~~~l~~L~ld~~E~~~Lkai~l~~~~~g~~~~~l~~~~~Ve~lqe~~~~aL~~~~~~~~-p~~~~Rf~kLLl~Lp~Lr~ 80 (113)
|..+|++|++|++||+|||||++|+ ++ +|+.+...|+++|+++..+|.+||..+| |++|.||++||++||+||+
T Consensus 141 ~~~~l~~L~ld~~E~~lLkAivL~~-d~----~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~Rf~~LL~~L~~Lr~ 215 (248)
T 2nxx_E 141 FCRTMYSMRVDNAEYALLTAIVIFS-ER----PALIEGWKVEKIQEIYLEALRAYVDNRRKPKPGTIFAKLLSVLTELRT 215 (248)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHTC-CC----SSCTTHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHcC-CC----CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHH
Confidence 6789999999999999999999997 66 6899999999999999999999999999 5589999999999999999
Q ss_pred CChhhhhhhhcccccCCCCcHHHHHHHHHhCC
Q psy16764 81 IPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 112 (113)
Q Consensus 81 l~~~~~e~L~f~~~~g~~~~i~~Ll~eml~~~ 112 (113)
+++.+++++|+.+..| .++++|+.||++.+
T Consensus 216 l~~~~~e~l~~~~~~~--~~~~~Ll~Em~~~~ 245 (248)
T 2nxx_E 216 LGNQNSEMCFSLKLKN--KKLPPFLAEIWDVD 245 (248)
T ss_dssp HHHHHHHHHHHHHHTT--CCCCHHHHHHTTTT
T ss_pred HHHHHHHHHHHHhCCC--CCccHHHHHHhcCc
Confidence 9999999999999987 69999999999865
No 43
>3l0l_A Nuclear receptor ROR-gamma; nuclear receptor, rorgamma, alternative splicing, DNA-bindin binding, nucleus, receptor, zinc-finger, acetylation, activator; HET: HC3; 1.74A {Homo sapiens} SCOP: a.123.1.0 PDB: 3b0w_A* 3kyt_A* 3l0j_A*
Probab=99.92 E-value=1.6e-26 Score=168.25 Aligned_cols=102 Identities=12% Similarity=0.093 Sum_probs=95.7
Q ss_pred hHHhhccccCCHHHHHHHHHHHhhcCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHhchhhhcC
Q psy16764 2 FQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSI 81 (113)
Q Consensus 2 f~~~l~~L~ld~~E~~~Lkai~l~~~~~g~~~~~l~~~~~Ve~lqe~~~~aL~~~~~~~~p~~~~Rf~kLLl~Lp~Lr~l 81 (113)
|..+|++|++|++||+|||||++|+||+ +|+.++.+|+++|++++.+|.+|+..+|| |.||++||++ |+||++
T Consensus 144 ~~~~l~~L~ld~~E~~lLkAivLfnpd~----~gL~~~~~ve~lqe~~~~aL~~y~~~~~~--~~rf~~LLl~-p~LR~i 216 (248)
T 3l0l_A 144 FSHSLSALHFSEDEIALYTALVLINAHR----PGLQEKRKVEQLQYNLELAFHHHLCKTHR--QSILAKLPPK-GKLRSL 216 (248)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHSCTTC----TTCSCHHHHHHHHHHHHHHHHHHHHHTTC--GGGGGGSCCT-THHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCC----CCCccHHHHHHHHHHHHHHHHHHHHhhCh--HHHHHHhhcc-HHHHHH
Confidence 7889999999999999999999999998 79999999999999999999999999986 6899999999 999999
Q ss_pred ChhhhhhhhcccccCCC---CcHHHHHHHHHh
Q psy16764 82 PSLVLEELFFRNIIGHN---TTIKKTIWHMYK 110 (113)
Q Consensus 82 ~~~~~e~L~f~~~~g~~---~~i~~Ll~eml~ 110 (113)
+++++|+++|.|.+|++ +++++|+.||+.
T Consensus 217 ~~~~~e~l~~~k~~~p~~~~~~~p~Ll~Emf~ 248 (248)
T 3l0l_A 217 CSQHVERLQIFQHLHPIVVQAAFPPLYKELFS 248 (248)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHSCHHHHHHHC
T ss_pred HHHHHHHHHHHHhhCcccccCCCChHHHHhhC
Confidence 99999999999999932 578999999974
No 44
>1ovl_A Orphan nuclear receptor NURR1 (MSe 414, 496, 511); NUUR1, LBD, transcription; 2.20A {Homo sapiens} SCOP: a.123.1.1
Probab=99.92 E-value=1.3e-25 Score=164.84 Aligned_cols=103 Identities=17% Similarity=0.163 Sum_probs=97.1
Q ss_pred hHHhhccccCCHHHHHHHHHHHhhcCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHhh--CCCcchHHHHHHHhchhhh
Q psy16764 2 FQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTV--YPSQPTRFCKIQLILPRLK 79 (113)
Q Consensus 2 f~~~l~~L~ld~~E~~~Lkai~l~~~~~g~~~~~l~~~~~Ve~lqe~~~~aL~~~~~~~--~p~~~~Rf~kLLl~Lp~Lr 79 (113)
|..+|++|++|++||+|||||++|++ + +|+.+...|+++|++++.+|.+||..+ +|++|.||++||++||+||
T Consensus 162 ~~~~l~~L~ld~~E~~lLkAivL~~~-~----~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~~Rf~~LL~~L~~Lr 236 (271)
T 1ovl_A 162 FSSNLQNMNIDISAFSCIAALAMVTE-R----HGLKEPKRVEELQNKIVNCLKDHVTFNNGGLNRPNYLSKLLGKLPELR 236 (271)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHSSC-C----TTCSCHHHHHHHHHHHHHHHHHHHHGGGTTTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC-C----CCCCcHHHHHHHHHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHH
Confidence 78899999999999999999999996 4 579999999999999999999999987 4788999999999999999
Q ss_pred cCChhhhhhhhcccccCCCCcHHHHHHHHHh
Q psy16764 80 SIPSLVLEELFFRNIIGHNTTIKKTIWHMYK 110 (113)
Q Consensus 80 ~l~~~~~e~L~f~~~~g~~~~i~~Ll~eml~ 110 (113)
++++.++|+++|.+++| .+++++++.||+.
T Consensus 237 ~l~~~~~e~l~~~~~~~-~~~~~~Ll~el~~ 266 (271)
T 1ovl_A 237 TLCTQGLQRIFYLKLED-LVPPPAIIDKLFL 266 (271)
T ss_dssp HHHHHHHHHHHHHHHHT-SSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC-CCCCcHHHHHHHH
Confidence 99999999999999999 9999999999875
No 45
>1pzl_A Hepatocyte nuclear factor 4-alpha; transcription; HET: MYR; 2.10A {Homo sapiens} SCOP: a.123.1.1 PDB: 3fs1_A* 1m7w_A* 1lv2_A*
Probab=99.92 E-value=2.1e-25 Score=160.03 Aligned_cols=107 Identities=20% Similarity=0.281 Sum_probs=102.8
Q ss_pred hHHhhccccCCHHHHHHHHHHHhhcCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHhchhhhcC
Q psy16764 2 FQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSI 81 (113)
Q Consensus 2 f~~~l~~L~ld~~E~~~Lkai~l~~~~~g~~~~~l~~~~~Ve~lqe~~~~aL~~~~~~~~p~~~~Rf~kLLl~Lp~Lr~l 81 (113)
|..+|++|++|++||+||||+++|+|++ +++.+..+|+++|+++..+|++|+..+||+.|.||++||+++|.||++
T Consensus 131 l~~~l~~L~ld~~E~~~L~ai~l~~~~~----~~l~~~~~ve~~q~~~~~~L~~y~~~~~~~~~~Rf~~LL~~l~~lr~~ 206 (237)
T 1pzl_A 131 LVLPFQELQIDDNEYAYLKAIIFFDPDA----KGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 206 (237)
T ss_dssp THHHHHHHTCCHHHHHHHHHHHHCCTTC----TTCSCHHHHHHHHHHHHHHHHHHHHSSSSCCTTHHHHHHTHHHHHHHH
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHhCCCC----CCCCcHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHH
Confidence 5688999999999999999999999998 689999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhhhcccccCCCCcHHHHHHHHHhCCC
Q psy16764 82 PSLVLEELFFRNIIGHNTTIKKTIWHMYKNAG 113 (113)
Q Consensus 82 ~~~~~e~L~f~~~~g~~~~i~~Ll~eml~~~~ 113 (113)
+..+.+++++.+.+| .+++++++.||+.+++
T Consensus 207 ~~~~~e~l~~~~~~~-~~~~~~l~~em~~~~~ 237 (237)
T 1pzl_A 207 TWQMIEQIQFIKLFG-MAKIDNLLQEMLLGGS 237 (237)
T ss_dssp HHHHHHHHHHHHHTT-CSCCCHHHHHHHTTCC
T ss_pred HHHHHHHhhhHHHhC-CCcHHHHHHHHHcCCC
Confidence 999999999999999 9999999999999864
No 46
>3cqv_A Nuclear receptor subfamily 1 group D member 2; reverb beta, heme, NR1D2, DNA-binding, metal-binding, nucleus, repressor, transcription; HET: HEM; 1.90A {Homo sapiens} PDB: 2v7c_A 2v0v_A
Probab=99.92 E-value=3.6e-25 Score=156.18 Aligned_cols=90 Identities=24% Similarity=0.262 Sum_probs=85.8
Q ss_pred hHHhhccccCCHHHHHHHHHHHhhcCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHhchhhhcC
Q psy16764 2 FQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSI 81 (113)
Q Consensus 2 f~~~l~~L~ld~~E~~~Lkai~l~~~~~g~~~~~l~~~~~Ve~lqe~~~~aL~~~~~~~~p~~~~Rf~kLLl~Lp~Lr~l 81 (113)
|..+|++|++|++||+|||||++|+||+ +|+.+...|+++|+++..+|.+|+..+||++|.||++||++||+||++
T Consensus 109 ~~~~~~~L~ld~~E~~lLkaivL~~pd~----~gL~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~Rf~~LL~~L~~Lr~l 184 (199)
T 3cqv_A 109 FSEKLNALQLSDEEMSLFTAVVLVSADR----SGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDLRSL 184 (199)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHTSCC----TTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCC----CCCcCHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999998 689999999999999999999999999999999999999999999999
Q ss_pred Chhhhhhhhccccc
Q psy16764 82 PSLVLEELFFRNII 95 (113)
Q Consensus 82 ~~~~~e~L~f~~~~ 95 (113)
++.++|+++|.|..
T Consensus 185 ~~~~~E~l~~~k~~ 198 (199)
T 3cqv_A 185 NNMHSEELLAFKVH 198 (199)
T ss_dssp HHHHHHHHHTCC--
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999998864
No 47
>3vhv_A Mineralocorticoid receptor; nuclear receptor, transcription factor, activating mutation, hypertension, non-steroidal antagonist; HET: LD1 LD2; 1.35A {Homo sapiens} SCOP: a.123.1.1 PDB: 2aax_A* 2aa6_A* 2ab2_A* 2aa2_A* 2aa5_A* 2aa7_A* 2a3i_A* 1y9r_A* 1ya3_A* 2oax_A* 2abi_A* 2q1h_A* 2q1v_A* 2q3y_A* 3ry9_A* 4fne_A* 4fn9_A*
Probab=99.91 E-value=1.5e-25 Score=164.23 Aligned_cols=105 Identities=11% Similarity=0.114 Sum_probs=93.4
Q ss_pred hHHhhccccCCHHHHHHHHHHHhhcC-CCCCcccCCCChhHHHHHHHHHHHHHHHHHHhhCCCc---chHHHHHHHhchh
Q psy16764 2 FQTELTMLRIVTEENSNLEIRNAYTS-RRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQ---PTRFCKIQLILPR 77 (113)
Q Consensus 2 f~~~l~~L~ld~~E~~~Lkai~l~~~-~~g~~~~~l~~~~~Ve~lqe~~~~aL~~~~~~~~p~~---~~Rf~kLLl~Lp~ 77 (113)
|..+|++|++|++||+|||||++|+| |+ +|+.+..+|+++|++++.+|.+||..+||++ |.||++||++||+
T Consensus 131 ~~~~l~~L~ld~~E~~lLkAIvLfnp~d~----~gL~~~~~ve~lqe~~~~aL~~y~~~~~~~~~~~~~RF~~LL~~Lp~ 206 (260)
T 3vhv_A 131 ISLQFVRLQLTFEEYTIMKVLLLLSTIPK----DGLKSQAAFEEMRTNYIKELRKMVTKCPNNSGQSWQRFYQLTKLLDS 206 (260)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHTSEEET----TCCTTHHHHHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHcCCcCC----CCCcCHHHHHHHHHHHHHHHHHHHHhcCCCCCcHhhHHHHHHHHHHH
Confidence 77899999999999999999999999 87 7899999999999999999999999999876 7999999999999
Q ss_pred hhcCChhhhhhhhcccc---cCCCCcHHHHHHHHHhC
Q psy16764 78 LKSIPSLVLEELFFRNI---IGHNTTIKKTIWHMYKN 111 (113)
Q Consensus 78 Lr~l~~~~~e~L~f~~~---~g~~~~i~~Ll~eml~~ 111 (113)
||++++.++|++||... .+ .+++++|+.||+.+
T Consensus 207 Lr~l~~~~~e~lff~~~~~~~~-~~~~p~Ll~Ei~~~ 242 (260)
T 3vhv_A 207 MHDLVSDLLEFCFYTFRESHAL-KVEFPAMLVEIISD 242 (260)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHH-TCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcc-cCCCcHHHHHHHhc
Confidence 99999999999997553 56 78999999999974
No 48
>1z5x_E Ecdysone receptor ligand binding domain; ponasterone A, nuclear receptor, ECR, USP, hormone/growth factor receptor complex; HET: P1A; 3.07A {Bemisia tabaci}
Probab=99.91 E-value=4.3e-25 Score=165.68 Aligned_cols=104 Identities=15% Similarity=0.193 Sum_probs=97.7
Q ss_pred hHHhhccccCCHHHHHHHHHHHhhcCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHhhC-CCcchHHHHHHHhchhhhc
Q psy16764 2 FQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVY-PSQPTRFCKIQLILPRLKS 80 (113)
Q Consensus 2 f~~~l~~L~ld~~E~~~Lkai~l~~~~~g~~~~~l~~~~~Ve~lqe~~~~aL~~~~~~~~-p~~~~Rf~kLLl~Lp~Lr~ 80 (113)
|..+|++|++|++||+|||||+||+ |+ +|+.+...|+.+|++++.+|.+||..+| |++|.||++||++||+||+
T Consensus 205 ~~~~l~~L~ld~~E~alLkAIvLf~-d~----~gL~~~~~Ve~lqe~~~~aL~~y~~~~~~~~~~~RF~kLLl~Lp~LR~ 279 (310)
T 1z5x_E 205 FCRHMCAMKVDNAEYALLTAIVIFS-ER----PSLSEGWKVEKIQEIYIEALKAYVENRRKPYATTIFAKLLSVLTELRT 279 (310)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHTC-CC----TTCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHcC-CC----CCCccHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999997 66 6899999999999999999999999998 6789999999999999999
Q ss_pred CChhhhhhhhcccccCCCCcHHHHHHHHHhCC
Q psy16764 81 IPSLVLEELFFRNIIGHNTTIKKTIWHMYKNA 112 (113)
Q Consensus 81 l~~~~~e~L~f~~~~g~~~~i~~Ll~eml~~~ 112 (113)
+++.+++++|+.+..| .++++|+.||++..
T Consensus 280 l~~~~~e~l~~~~~~~--~~~~~Ll~Eml~~~ 309 (310)
T 1z5x_E 280 LGNMNSETCFSLKLKN--RKVPSFLEEIWDVV 309 (310)
T ss_dssp HHHHHHHHHHHHHHTT--CCCCHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhcCC--CCchHHHHHHHcCC
Confidence 9999999999999987 59999999999864
No 49
>3n00_A REV-ERBA-alpha; reverba ncorid1, anti-parallel B-sheet, transcription regula; 2.60A {Homo sapiens}
Probab=99.91 E-value=1.1e-24 Score=158.57 Aligned_cols=90 Identities=21% Similarity=0.234 Sum_probs=86.4
Q ss_pred hHHhhccccCCHHHHHHHHHHHhhcCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHhchhhhcC
Q psy16764 2 FQTELTMLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSI 81 (113)
Q Consensus 2 f~~~l~~L~ld~~E~~~Lkai~l~~~~~g~~~~~l~~~~~Ve~lqe~~~~aL~~~~~~~~p~~~~Rf~kLLl~Lp~Lr~l 81 (113)
|..+|++|++|++||+|||||++|+||+ +|+.+..+|+++|++++.+|.+||..+||++|.||++||++||+||++
T Consensus 154 ~~~~l~~L~ld~~E~~lLkAIvL~npd~----~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~RF~~LLl~Lp~LR~l 229 (245)
T 3n00_A 154 FSEKLNSLALTEEELGLFTAVVLVSADR----SGMENSASVEQLQETLLRALRALVLKNRPLETSRFTKLLLKLPDLRTL 229 (245)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHTSCC----TTCSSHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCC----CCCccHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhHHHHHH
Confidence 7889999999999999999999999998 799999999999999999999999999999999999999999999999
Q ss_pred Chhhhhhhhccccc
Q psy16764 82 PSLVLEELFFRNII 95 (113)
Q Consensus 82 ~~~~~e~L~f~~~~ 95 (113)
++.++|+++|.|.-
T Consensus 230 ~~~~~E~L~~~k~~ 243 (245)
T 3n00_A 230 NNMHSEKLLSFRVD 243 (245)
T ss_dssp HHHHTTCEEEEEC-
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999998863
No 50
>1t7r_A Androgen receptor; nuclear receptor, transcription factor, ligand binding domain, AF-2, androgen, testosterone, DHT, alpha-helical sandwich; HET: DHT; 1.40A {Pan troglodytes} SCOP: a.123.1.1 PDB: 1t73_A* 1t76_A* 1t74_A* 1t79_A* 1t7m_A* 1t7f_A* 1t7t_A* 2am9_A* 2ama_A* 2amb_A* 2pnu_A* 1e3g_A* 2q7i_A* 1xj7_A* 2q7j_A* 3g0w_A* 2ihq_A* 2nw4_A* 1i37_A* 2q7k_A* ...
Probab=99.90 E-value=8.9e-25 Score=160.72 Aligned_cols=105 Identities=13% Similarity=0.105 Sum_probs=95.2
Q ss_pred hHHhhccccCCHHHHHHHHHHHhhcC-CCCCcccCCCChhHHHHHHHHHHHHHHHHHHhhC---CCcchHHHHHHHhchh
Q psy16764 2 FQTELTMLRIVTEENSNLEIRNAYTS-RRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVY---PSQPTRFCKIQLILPR 77 (113)
Q Consensus 2 f~~~l~~L~ld~~E~~~Lkai~l~~~-~~g~~~~~l~~~~~Ve~lqe~~~~aL~~~~~~~~---p~~~~Rf~kLLl~Lp~ 77 (113)
|..+|++|++|++||+|||||++|+| ++ +++.+..+|+++|+++..+|.+||..++ |++|.||++||++||+
T Consensus 140 ~~~~l~~L~ld~~E~~lLkAIvLfnp~~~----~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~~~~Rf~~LL~~L~~ 215 (269)
T 1t7r_A 140 LSQEFGWLQITPQEFLCMKALLLFSIIPV----DGLKNQKFFDELRMNYIKELDRIIACKRKNPTSCSRRFYQLTKLLDS 215 (269)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHTSEEET----TCCTTHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHcCCCcc----CCCccHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHH
Confidence 67899999999999999999999999 77 6899999999999999999999998775 4678999999999999
Q ss_pred hhcCChhhhhhhhc--cc-ccCCCCcHHHHHHHHHhC
Q psy16764 78 LKSIPSLVLEELFF--RN-IIGHNTTIKKTIWHMYKN 111 (113)
Q Consensus 78 Lr~l~~~~~e~L~f--~~-~~g~~~~i~~Ll~eml~~ 111 (113)
||+++..++|.+|. .+ ..| .+++++|+.||+.+
T Consensus 216 Lr~l~~~~~e~lf~~~~~~~~~-~~~~~~Ll~E~~~~ 251 (269)
T 1t7r_A 216 VQPIARELHQFTFDLLIKSHMV-SVDFPEMMAEIISV 251 (269)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHH-TCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcC-CcChHHHHHHHHhC
Confidence 99999999999883 23 347 89999999999974
No 51
>3vhu_A Mineralocorticoid receptor; nuclear receptor, transcription factor, activating mutation, hypertension, antagonist, spironolactone; HET: SNL; 2.11A {Homo sapiens}
Probab=99.90 E-value=1.4e-24 Score=161.86 Aligned_cols=105 Identities=11% Similarity=0.114 Sum_probs=91.8
Q ss_pred hHHhhccccCCHHHHHHHHHHHhhcC-CCCCcccCCCChhHHHHHHHHHHHHHHHHHHhhCCCc---chHHHHHHHhchh
Q psy16764 2 FQTELTMLRIVTEENSNLEIRNAYTS-RRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQ---PTRFCKIQLILPR 77 (113)
Q Consensus 2 f~~~l~~L~ld~~E~~~Lkai~l~~~-~~g~~~~~l~~~~~Ve~lqe~~~~aL~~~~~~~~p~~---~~Rf~kLLl~Lp~ 77 (113)
|..+|++|++|++||+|||||++|+| ++ +|+.+..+|+++|++++.+|.+||..++|+. |.||++||++||+
T Consensus 165 ~~~~l~~L~ld~~EyalLkAIvLfnp~d~----~gL~~~~~Ve~lQe~~~~aL~~y~~~~~~~~~~~~~RF~~LL~lLp~ 240 (294)
T 3vhu_A 165 ISLQFVRLQLTFEEYTIMKVLLLLSTIPK----DGLKSQAAFEEMRTNYIKELRKMVTKCPNNSGQSWQRFYQLTKLLDS 240 (294)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHTSEEET----TCCTTHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCCCC----CCCCcHHHHHHHHHHHHHHHHHHHHhcCCCCccHhHHHHHHHHHHHH
Confidence 67899999999999999999999999 87 7899999999999999999999999988875 7999999999999
Q ss_pred hhcCChhhhhhhhcccc---cCCCCcHHHHHHHHHhC
Q psy16764 78 LKSIPSLVLEELFFRNI---IGHNTTIKKTIWHMYKN 111 (113)
Q Consensus 78 Lr~l~~~~~e~L~f~~~---~g~~~~i~~Ll~eml~~ 111 (113)
||++++.++|++||... .+ .+++++|+.||+.+
T Consensus 241 Lr~l~~~~~e~lff~~~q~~~~-~~~~p~Ll~Ei~~~ 276 (294)
T 3vhu_A 241 MHDLVSDLLEFCFYTFRESHAL-KVEFPAMLVEIISD 276 (294)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHH-TCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccC-cCCCCHHHHHHHcC
Confidence 99999999999996543 45 68899999999974
No 52
>1sqn_A PR, progesterone receptor; nuclear receptor, steroid receptor, norethindrone, birth control, hormone/growth factor receptior complex; HET: NDR; 1.45A {Homo sapiens} SCOP: a.123.1.1 PDB: 3g8o_A* 3g8n_A* 3d90_A* 1e3k_A* 1sr7_A* 1zuc_B* 3zr7_A* 2w8y_A* 3zra_A* 3zrb_A* 4a2j_A* 4apu_A* 1a28_A* 2ovh_A* 2ovm_A* 3hq5_A* 3kba_A*
Probab=99.90 E-value=1.1e-24 Score=159.52 Aligned_cols=103 Identities=14% Similarity=0.102 Sum_probs=94.1
Q ss_pred hHHhhccccCCHHHHHHHHHHHhhcC-CCCCcccCCCChhHHHHHHHHHHHHHHHHHHhh---CCCcchHHHHHHHhchh
Q psy16764 2 FQTELTMLRIVTEENSNLEIRNAYTS-RRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTV---YPSQPTRFCKIQLILPR 77 (113)
Q Consensus 2 f~~~l~~L~ld~~E~~~Lkai~l~~~-~~g~~~~~l~~~~~Ve~lqe~~~~aL~~~~~~~---~p~~~~Rf~kLLl~Lp~ 77 (113)
|..+|++|++|++||+|||||++|+| ++ +|+.+..+|+++|+++..+|.+||..+ +|++|.||++||++||+
T Consensus 132 ~~~~l~~L~ld~~E~~lLkAIvLfnp~~~----~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~~~~Rf~~LL~~L~~ 207 (261)
T 1sqn_A 132 IPQEFVKLQVSQEEFLCMKVLLLLNTIPL----EGLRSQTQFEEMRSSYIRELIKAIGLRQKGVVSSSQRFYQLTKLLDN 207 (261)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHTSEECT----TCCTTHHHHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCCcc----cccccHHHHHHHHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHhHH
Confidence 67899999999999999999999999 77 689999999999999999999999874 57789999999999999
Q ss_pred hhcCChhhhhhhhccccc-----CCCCcHHHHHHHHHhC
Q psy16764 78 LKSIPSLVLEELFFRNII-----GHNTTIKKTIWHMYKN 111 (113)
Q Consensus 78 Lr~l~~~~~e~L~f~~~~-----g~~~~i~~Ll~eml~~ 111 (113)
||+++... ++++.+.+ | ++++++|+.||+.+
T Consensus 208 Lr~~~~~~--~~~~~~~~~q~~~~-~~~~~~Ll~Ei~~~ 243 (261)
T 1sqn_A 208 LHDLVKQL--HLYCLNTFIQSRAL-SVEFPEMMSEVIAA 243 (261)
T ss_dssp HHHHHHHH--HHHHHHHHHTHHHH-TCCCCHHHHHHHHH
T ss_pred HHHHHHHH--HHHHHHHHHHhcCC-CCChHHHHHHHHhc
Confidence 99998764 66777888 9 99999999999974
No 53
>3gyt_A Nuclear hormone receptor of the steroid/thyroid hormone receptors superfamily; nuclear receptor, ligand binding domain, dafachronic acid, nematode, DNA-binding, metal-binding, nucleus, receptor; HET: DL4; 2.40A {Strongyloides stercoralis} PDB: 3gyu_A*
Probab=99.90 E-value=1.3e-24 Score=158.44 Aligned_cols=96 Identities=14% Similarity=0.195 Sum_probs=86.3
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCCcccCCC---ChhHHHHHHHHHHHHHHHHHHhhC-CCcchHHHHHHHhchhhhcCChh
Q psy16764 9 LRIVTEENSNLEIRNAYTSRRGSRVRFKT---GSKFTAAIQGHTQIFLNKYIHTVY-PSQPTRFCKIQLILPRLKSIPSL 84 (113)
Q Consensus 9 L~ld~~E~~~Lkai~l~~~~~g~~~~~l~---~~~~Ve~lqe~~~~aL~~~~~~~~-p~~~~Rf~kLLl~Lp~Lr~l~~~ 84 (113)
++.++.||+|||||+||+||+ +|+. |+.+|+++|++++.||++|+..+| |++|.||+|||++||+||++++.
T Consensus 143 l~~~~~E~alLkAivLfspDr----~gL~~~~d~~~Ve~lQe~~~~aL~~y~~~~~~p~~~~rf~kLL~~Lp~LR~i~~~ 218 (244)
T 3gyt_A 143 VRKNDLAIDIIVLMVLFDSKR----EGLVSQQDKETVEKLHRNYESLLHRYLYSIHKEEAEQRFASIPKALVALRKVAEN 218 (244)
T ss_dssp HHTCHHHHHHHHHHHHSCTTS----TTCCCHHHHHHHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhHHHHHHHHHHHHHhccC----CCCCccccHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 444677999999999999999 7999 799999999999999999999888 88999999999999999999999
Q ss_pred hhhhhhcccccCCCCcHHHHHHHHHhC
Q psy16764 85 VLEELFFRNIIGHNTTIKKTIWHMYKN 111 (113)
Q Consensus 85 ~~e~L~f~~~~g~~~~i~~Ll~eml~~ 111 (113)
+++ +|+ +..+ +.++++|+.||++.
T Consensus 219 ~~~-lf~-~~~~-~~~~~pLl~Eif~~ 242 (244)
T 3gyt_A 219 AVT-LFL-GAGN-TTEAASLPKEFFAT 242 (244)
T ss_dssp TTT-TTT-TSCC-CTTSCTTGGGTSCC
T ss_pred HHH-HHH-hccC-CccCCcHHHHHhCc
Confidence 998 655 4555 67899999999875
No 54
>3mnp_A Glucocorticoid receptor; protein-ligand complex, steroid nuclear receptor, mouse GR, hormone receptor; HET: DEX; 1.50A {Mus musculus} SCOP: a.123.1.1 PDB: 3mno_A* 3mne_A* 1m2z_A* 3k22_A* 3cld_A* 3k23_A* 3e7c_A* 1nhz_A* 1p93_A* 3bqd_A* 3h52_A* 3gn8_A* 4e2j_A*
Probab=99.90 E-value=5.5e-24 Score=156.09 Aligned_cols=105 Identities=16% Similarity=0.099 Sum_probs=97.1
Q ss_pred hHHhhccccCCHHHHHHHHHHHhhcC-CCCCcccCCCChhHHHHHHHHHHHHHHHHHHhhCCC---cchHHHHHHHhchh
Q psy16764 2 FQTELTMLRIVTEENSNLEIRNAYTS-RRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPS---QPTRFCKIQLILPR 77 (113)
Q Consensus 2 f~~~l~~L~ld~~E~~~Lkai~l~~~-~~g~~~~~l~~~~~Ve~lqe~~~~aL~~~~~~~~p~---~~~Rf~kLLl~Lp~ 77 (113)
|..+|++|++|++||+|||||++|+| ++ +|+.+..+|+++|+++..+|.+||..+||+ ++.||++||++||+
T Consensus 133 ~~~~l~~L~ld~~E~~lLkAIvL~np~d~----~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~~~~Rf~~LL~lL~~ 208 (261)
T 3mnp_A 133 ISTELQRLQVSYEEYLCMKTLLLLSSVPK----EGLKSQELFDEIRMTYIKELGKAIAKRGGNSSQNWQRFYQLTKLLDS 208 (261)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHTSEEET----TCCTTHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHcCCCCc----CCCccHHHHHHHHHHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHH
Confidence 67899999999999999999999999 88 789999999999999999999999999995 48999999999999
Q ss_pred hhcCChhhhhhhhccccc--CCCCcHHHHHHHHHhC
Q psy16764 78 LKSIPSLVLEELFFRNII--GHNTTIKKTIWHMYKN 111 (113)
Q Consensus 78 Lr~l~~~~~e~L~f~~~~--g~~~~i~~Ll~eml~~ 111 (113)
||+++..+.+.+|+.+.. + +..+++|+.||+..
T Consensus 209 Lr~l~~~~~e~~f~~~~~~~~-~~~~p~Ll~Ei~~~ 243 (261)
T 3mnp_A 209 MHDVVENLLSYCFQTFLDKSM-SIEFPEMLAEIITN 243 (261)
T ss_dssp HHHHHHHHHHHHHHHHHCGGG-CCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcc-cCCCcHHHHHHHhc
Confidence 999999999999877665 4 67889999999973
No 55
>3e9v_A Protein BTG2; B-cell translocation gene 2, structural genomics, PSI- 2, protein structure initiative; 1.70A {Homo sapiens} SCOP: d.370.1.1 PDB: 3dju_B 3djn_B
Probab=39.04 E-value=30 Score=21.95 Aligned_cols=32 Identities=16% Similarity=0.264 Sum_probs=26.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhh-CCCcchH
Q psy16764 36 KTGSKFTAAIQGHTQIFLNKYIHTV-YPSQPTR 67 (113)
Q Consensus 36 l~~~~~Ve~lqe~~~~aL~~~~~~~-~p~~~~R 67 (113)
.-+..+|+...+....+|.+..+.+ ||+.|.|
T Consensus 22 ~l~~~~v~~F~~~L~~~L~~~y~~HW~P~~P~k 54 (120)
T 3e9v_A 22 CVSEQRLKVFSGALQEALTEHYKHHWFPEKPSK 54 (120)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTTSCCTTSTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Confidence 3457899999999999999988766 6888854
No 56
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=36.34 E-value=36 Score=20.91 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=23.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhhCCCcc
Q psy16764 37 TGSKFTAAIQGHTQIFLNKYIHTVYPSQP 65 (113)
Q Consensus 37 ~~~~~Ve~lqe~~~~aL~~~~~~~~p~~~ 65 (113)
-.....+.+++++...|.+| ...||..+
T Consensus 59 ~~~~~~~~l~~~l~~~L~~y-H~~~P~~~ 86 (135)
T 2v9v_A 59 ISTERYQAWWQAVTRALEEF-HSRYPLRP 86 (135)
T ss_dssp EEHHHHHHHHHHHHHHHHHH-HHHCTTSS
T ss_pred ecHHHHHHHHHHHHHHHHHH-HHhCCCcc
Confidence 45789999999999999999 56788765
No 57
>2z15_A Protein TOB1; human TOB1 protein, phosphorylation, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.30A {Homo sapiens} SCOP: d.370.1.1 PDB: 2d5r_B
Probab=34.67 E-value=38 Score=21.78 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=25.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhh-CCCcchH
Q psy16764 37 TGSKFTAAIQGHTQIFLNKYIHTV-YPSQPTR 67 (113)
Q Consensus 37 ~~~~~Ve~lqe~~~~aL~~~~~~~-~p~~~~R 67 (113)
-...+|+...+.....|.++.+.+ ||+.|.|
T Consensus 27 lp~~~v~~F~~~L~~~L~~~y~~HWyP~~P~k 58 (130)
T 2z15_A 27 LPRRRVNIFGEELERLLKKKYEGHWYPEKPYK 58 (130)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTCCCTTCTTT
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCCCCCCCc
Confidence 357889999999999999987655 5888865
No 58
>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens}
Probab=31.56 E-value=24 Score=26.33 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=25.7
Q ss_pred HHHHHHHHHhhCCCcchHHHHHHHhchhhhc
Q psy16764 50 QIFLNKYIHTVYPSQPTRFCKIQLILPRLKS 80 (113)
Q Consensus 50 ~~aL~~~~~~~~p~~~~Rf~kLLl~Lp~Lr~ 80 (113)
...|.+||..+|.++|..|..-+..|..||.
T Consensus 25 ~~~L~~~I~~~y~e~~~~~~~~l~~l~~LR~ 55 (363)
T 3rau_A 25 QPAVKKFVLKNYGENPEAYNEELKKLELLRQ 55 (363)
T ss_dssp HHHHHHHHHHTTCSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 4568889999998888888888888888885
No 59
>1or4_A Heme-based aerotactic transducer hemat; globin fold, signaling protein; HET: HEM; 2.15A {Bacillus subtilis} SCOP: a.1.1.2 PDB: 1or6_A*
Probab=27.58 E-value=1.1e+02 Score=19.83 Aligned_cols=19 Identities=32% Similarity=0.286 Sum_probs=11.8
Q ss_pred HhhccccCCHHHHHHHHHH
Q psy16764 4 TELTMLRIVTEENSNLEIR 22 (113)
Q Consensus 4 ~~l~~L~ld~~E~~~Lkai 22 (113)
.+++-++++++....++++
T Consensus 36 ~~~~~~~lt~~d~~~l~~~ 54 (178)
T 1or4_A 36 KQLKMVRLGDAELYVLEQL 54 (178)
T ss_dssp HHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHH
Confidence 4455566666666666665
No 60
>2ixn_A Serine/threonine-protein phosphatase 2A activator; PP2A phosphatase activator prolyl isomerase PTPA, isomerase; 2.8A {Saccharomyces cerevisiae} SCOP: a.268.1.1
Probab=26.23 E-value=51 Score=24.38 Aligned_cols=31 Identities=13% Similarity=0.069 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhCCC--c-chHHHH
Q psy16764 39 SKFTAAIQGHTQIFLNKYIHTVYPS--Q-PTRFCK 70 (113)
Q Consensus 39 ~~~Ve~lqe~~~~aL~~~~~~~~p~--~-~~Rf~k 70 (113)
+..|+++. .+++.|...+....|. + |+|||+
T Consensus 49 s~~v~~l~-~iL~~l~~~ide~PP~~~~~~~RFGN 82 (310)
T 2ixn_A 49 SESINSMM-NLLSQIKDITQKHPVIKDADSSRFGK 82 (310)
T ss_dssp CHHHHHHH-HHHHHHHHHHTTCCCCC-----CCCC
T ss_pred CHHHHHHH-HHHHHHHHHHHHCCCCCCCCCCCCCC
Confidence 57888888 7888899999988885 4 677654
No 61
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A
Probab=24.89 E-value=41 Score=25.09 Aligned_cols=31 Identities=26% Similarity=0.590 Sum_probs=25.5
Q ss_pred HHHHHHHHHhhCC---CcchHHHHHHHhchhhhc
Q psy16764 50 QIFLNKYIHTVYP---SQPTRFCKIQLILPRLKS 80 (113)
Q Consensus 50 ~~aL~~~~~~~~p---~~~~Rf~kLLl~Lp~Lr~ 80 (113)
...|.+||..+|. ++|..|.+.+..|..||.
T Consensus 39 ~~~l~~~I~~~y~~~~e~~~~~~~~l~~l~~LR~ 72 (380)
T 3c3r_A 39 AKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRR 72 (380)
T ss_dssp HHHHHHHHHHHCCCCSSSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHHH
Confidence 4568889988887 678889999988888886
No 62
>2ixm_A Serine/threonine-protein phosphatase 2A regulatory subunit B'; 2 PTPA, ppiase, hydrolase activator; 1.5A {Homo sapiens} SCOP: a.268.1.1 PDB: 2hv6_A 2hv7_A* 2g62_A
Probab=24.03 E-value=31 Score=25.41 Aligned_cols=32 Identities=25% Similarity=0.354 Sum_probs=24.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhCC-CcchHHHH
Q psy16764 38 GSKFTAAIQGHTQIFLNKYIHTVYP-SQPTRFCK 70 (113)
Q Consensus 38 ~~~~Ve~lqe~~~~aL~~~~~~~~p-~~~~Rf~k 70 (113)
.++.|+++. .+++.|...+....| ++|+|||+
T Consensus 51 ~s~~v~~l~-~iL~~l~~~i~e~PP~~~p~RFGN 83 (303)
T 2ixm_A 51 VSEAIEKLL-ALLNTLDRWIDETPPVDQPSRFGN 83 (303)
T ss_dssp CCHHHHHHH-HHHHHHHHHHHTSCCCCCSCSSSC
T ss_pred CCHHHHHHH-HHHHHHHHHHHhCCCCCCCCCcCC
Confidence 357888888 788889999988877 34667653
No 63
>4akr_A F-actin-capping protein subunit alpha; actin-binding protein; 2.20A {Dictyostelium discoideum}
Probab=21.30 E-value=78 Score=22.94 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhCCCc
Q psy16764 40 KFTAAIQGHTQIFLNKYIHTVYPSQ 64 (113)
Q Consensus 40 ~~Ve~lqe~~~~aL~~~~~~~~p~~ 64 (113)
..++.+++.+..+|..|+...||+.
T Consensus 109 ~~~e~~R~al~~~l~~Yv~~hYp~g 133 (281)
T 4akr_A 109 QDIEQYRAAFDEEATKYCNEYYPNG 133 (281)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred cchHHHHHHHHHHHHHHHHhhCCCC
Confidence 3578899999999999999999964
No 64
>2aua_A Hypothetical protein; dimer, structural genomics, PSI, prote structure initiative, midwest center for structural genomic unknown function; 2.35A {Bacillus cereus} SCOP: d.166.1.6
Probab=20.02 E-value=47 Score=23.36 Aligned_cols=33 Identities=18% Similarity=0.288 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHHHHHHHHH----H-hhCCCcchHHHHH
Q psy16764 39 SKFTAAIQGHTQIFLNKYI----H-TVYPSQPTRFCKI 71 (113)
Q Consensus 39 ~~~Ve~lqe~~~~aL~~~~----~-~~~p~~~~Rf~kL 71 (113)
...+-..++++..+|.+.| + ..+|+-|+||..+
T Consensus 94 ~~v~~~y~d~~~ralrElIfE~VR~~eFPe~PSRl~Sl 131 (224)
T 2aua_A 94 AKVVISYMDQTIRAARETIVEMVRLQEFPEYPSRLSCL 131 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCTTSCE
T ss_pred ceeecchHHHHHHHHHHHHHHHHHHHhCCCCCchhhhh
Confidence 3445556666666666653 3 4589999886543
Done!