RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16764
(113 letters)
>3p0u_A Nuclear receptor subfamily 2 group C member 2; ligand binding
domain, orphan nuclear receptor, testicular R 4,
signaling protein; 3.00A {Homo sapiens}
Length = 249
Score = 59.6 bits (144), Expect = 3e-12
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
Q Q+ L Y+ Y R +I + LP L+ + S + EELFF +IG N +I
Sbjct: 169 KFQEAAQMELQDYVQATYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIG-NVSIDS 227
Query: 104 TIWHMYKN 111
I ++ K
Sbjct: 228 IIPYILKM 235
>3f5c_B Nuclear receptor subfamily 0 group B member 1; transcriptional
corepressor, regulatory complex, DNA-binding,
lipid-binding, metal-binding; 3.00A {Mus musculus}
Length = 268
Score = 58.7 bits (141), Expect = 9e-12
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 39 SKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHN 98
K+ +Q TQ L ++I + R ++ L L+ I S V+ ELFFR IIG
Sbjct: 195 VKYIEGLQWRTQQILTEHIRMMQREYQIRSAELNSALFLLRFINSDVVTELFFRPIIG-A 253
Query: 99 TTIKKTIWHM 108
++ + M
Sbjct: 254 VSMDDMMLEM 263
>1g2n_A Ultraspiracle protein; antiparallel alpha-helical sandwich,
structural proteomics in europe, spine, structural
genomics, gene regulation; HET: EPH; 1.65A {Heliothis
virescens} SCOP: a.123.1.1 PDB: 2r40_A* 1r20_A* 1r1k_A*
3ixp_A*
Length = 264
Score = 58.3 bits (141), Expect = 1e-11
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++ + L++Y S+ RF + L LP L+SI E LFF +++ +T+I
Sbjct: 188 VLREKMFLCLDEYCRRSRSSEEGRFAALLLRLPALRSISLKSFEHLFFFHLVA-DTSIAG 246
Query: 104 TIWHMYKN 111
I +N
Sbjct: 247 YIRDALRN 254
>2nxx_A Ultraspiracle (USP, NR2B4); hormone receptor, APO and holo ligand
binding pocket, hormone/growth factor complex; HET: P1A;
2.75A {Tribolium castaneum}
Length = 235
Score = 58.2 bits (141), Expect = 1e-11
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++ L +Y T +P++P RF K+ L LP L+SI LE LFF +IG + I
Sbjct: 165 MLREKIYGVLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DVPIDT 223
Query: 104 TIWHMYKN 111
+ M +
Sbjct: 224 FLMEMLEG 231
>3cjw_A COUP transcription factor 2; COUP-TFII, nuclear receptor, ligand
binding domain, orphan receptor, three-layered helical
sandwich, DNA-binding; 1.48A {Homo sapiens}
Length = 244
Score = 57.1 bits (138), Expect = 3e-11
Identities = 27/68 (39%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
++Q +Q L +Y+ + YP+QPTRF K+ L LP L+++ S V+E+LFF ++G T I+
Sbjct: 166 SLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG-KTPIET 224
Query: 104 TIWHMYKN 111
I M +
Sbjct: 225 LIRDMLLS 232
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin,
armadillo repeat, nuclear receptor LIGA binding domain,
protein binding; HET: P6L; 2.76A {Homo sapiens}
Length = 352
Score = 57.3 bits (138), Expect = 3e-11
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
+Q L Y YP Q +F ++ L LP +++I E L+++++ G +
Sbjct: 283 GVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNG-DVPYNN 341
Query: 104 TIWHMYK 110
+ M
Sbjct: 342 LLIEMLH 348
>2iz2_A FTZ-F1 alpha, nuclear hormone receptor FTZ-F1; nuclear protein,
phosphorylation, PAIR-RULE protein; 2.8A {Drosophila
melanogaster} PDB: 2xhs_A
Length = 243
Score = 56.3 bits (136), Expect = 4e-11
Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
+ Q L Y T YPS +F + ILP + ++ + L+ ++ G + +
Sbjct: 175 EGHDNVQAALLDYTLTCYPSVNDKFRGLVNILPEIHAMAVRGEDHLYTKHCAG-SAPTQT 233
Query: 104 TIWHMYK 110
+ M
Sbjct: 234 LLMEMLH 240
>1ymt_A Steroidogenic factor 1; SF-1, ligand-binding domain, ligand,
phosphatidyl glycerol, CO-repressor peptide,
transcription; HET: DR9; 1.20A {Mus musculus} PDB:
3f7d_A* 1yp0_A* 1yow_A* 1zdt_A*
Length = 246
Score = 55.9 bits (135), Expect = 7e-11
Identities = 11/67 (16%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
Q L Y + YP +F ++ L L ++++ E L+ +++
Sbjct: 177 DAQEKANAALLDYTLSHYPHSGDKFQQLLLSLVEVRALSMQAKEYLYHKHLGN-EMPRNN 235
Query: 104 TIWHMYK 110
+ M +
Sbjct: 236 LLIEMLQ 242
>3plz_A FTZ-F1 related protein; alpha helical sandwhich, family five, TRAN
factor, transcription-receptor-agonist comple; HET: 470;
1.75A {Homo sapiens} PDB: 1yok_A* 1yuc_A* 4dor_A*
1zdu_A* 4dos_A* 1zh7_A 1pk5_A 3f5c_A
Length = 257
Score = 55.9 bits (135), Expect = 8e-11
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
+Q L Y YP Q +F ++ L LP +++I E L+++++ G +
Sbjct: 188 GVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNG-DVPYNN 246
Query: 104 TIWHMYK 110
+ M
Sbjct: 247 LLIEMLH 253
>1pzl_A Hepatocyte nuclear factor 4-alpha; transcription; HET: MYR; 2.10A
{Homo sapiens} SCOP: a.123.1.1 PDB: 3fs1_A* 1m7w_A*
1lv2_A*
Length = 237
Score = 55.5 bits (134), Expect = 1e-10
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
++ Q+ L YI+ RF ++ L+LP L+SI ++E++ F + G
Sbjct: 169 RLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKLFG 221
>1hg4_A Ultraspiracle; nuclear hormone receptor, transcription factor,
ligand binding; HET: LPP; 2.4A {Drosophila melanogaster}
SCOP: a.123.1.1
Length = 279
Score = 54.6 bits (131), Expect = 3e-10
Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
+ L+++ +P RF ++ L LP L+SI + LF I + +++
Sbjct: 202 MCREKVYACLDEHCRLEHPGDDGRFAQLLLRLPALRSISLKCQDHLFLFRITS-DRPLEE 260
Query: 104 TIWHMYKN 111
+
Sbjct: 261 LFLEQLEA 268
>2p1t_A Retinoic acid receptor RXR-alpha; protein-ligand complex, hormone
receptor; HET: 3TN; 1.80A {Homo sapiens} SCOP: a.123.1.1
PDB: 1mvc_A* 1mzn_A* 1mv9_A* 2p1u_A* 2p1v_A* 2zxz_A*
2zy0_A* 3fug_A* 3nsp_A 3nsq_A* 3r29_A 3r2a_A* 3r5m_A*
3e94_A* 3kwy_A* 1fby_A* 3uvv_B* 3fc6_A* 1rdt_A* 3fal_A*
...
Length = 240
Score = 52.8 bits (127), Expect = 9e-10
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
A++ L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I
Sbjct: 169 ALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDT 227
Query: 104 TIWHMYKN 111
+ M +
Sbjct: 228 FLMEMLEA 235
>1lbd_A RXR_LBD, retinoid X receptor; transcription factor, nuclear
receptor, structural proteomic europe, spine, structural
genomics; 2.70A {Homo sapiens} SCOP: a.123.1.1 PDB:
1z5x_U* 2q60_A
Length = 282
Score = 52.1 bits (125), Expect = 2e-09
Identities = 25/59 (42%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKTIWHMYKN 111
L Y YP QP RF K+ L LP L+SI LE LFF +IG +T I + M +
Sbjct: 220 LEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG-DTPIDTFLMEMLEA 277
>2e2r_A Estrogen-related receptor gamma; ERR gamma, BPA, nuclear receptor,
transcription; HET: 2OH; 1.60A {Homo sapiens} SCOP:
a.123.1.1 PDB: 2zas_A* 2zbs_A 2zkc_A* 2p7g_A* 1vjb_A*
1tfc_A 2p7a_A* 2p7z_A* 2gpu_A* 1kv6_A 2gp7_A 2gpp_A*
2gpo_A* 2gpv_A* 1s9q_A* 1s9p_A* 2ewp_A*
Length = 244
Score = 50.1 bits (120), Expect = 1e-08
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
+Q L Y + P R K+ + LP L+ + ++ + + G + K
Sbjct: 176 LQDVLHEALQDYEAGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEG-KVPMHKL 234
Query: 105 IWHMYK 110
M +
Sbjct: 235 FLEMLE 240
>3ltx_A Estrogen receptor; constitutive, nuclear receptor, DNA-binding,
metal-binding, nucleus, transcription, transcription
regulation, zinc-finger; 2.60A {Crassostrea gigas}
Length = 243
Score = 46.6 bits (111), Expect = 1e-07
Identities = 4/44 (9%), Positives = 11/44 (25%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
+ +P + L+L ++ + G
Sbjct: 173 IVDTAQKYHPDNVRHVPAVLLLLTHIRQAGERGIAFFQRLKSEG 216
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding,
HOST-virus interaction, metal-binding, nucleus,
receptor, transcription, transcription regulation,
zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo
sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Length = 419
Score = 47.0 bits (111), Expect = 2e-07
Identities = 11/68 (16%), Positives = 26/68 (38%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
IQ + L + +P F K+ + L+ I + ++ L + ++
Sbjct: 350 DIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHP 409
Query: 104 TIWHMYKN 111
+ +YK+
Sbjct: 410 LLQEIYKD 417
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 45.1 bits (106), Expect = 8e-07
Identities = 23/53 (43%), Positives = 28/53 (52%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
A++ L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 396 ALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 448
>3k6p_A Steroid hormone receptor ERR1; estrogen related receptor alpha,
DNA-binding, isopeptide BON binding, nucleus,
phosphoprotein, transcription; HET: 5FB; 2.00A {Homo
sapiens} PDB: 1xb7_A 2pjl_A* 3d24_A
Length = 248
Score = 43.2 bits (102), Expect = 3e-06
Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 5/71 (7%)
Query: 44 AIQGHTQIFLNKYIHTVY----PSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNT 99
++ L +Y ++ R ++ L LP L+ VL + + G
Sbjct: 175 QLREALHEALLEYEAGRAGPGGGAERRRAGRLLLTLPLLRQTAGKVLAHFYGVKLEG-KV 233
Query: 100 TIKKTIWHMYK 110
+ K M +
Sbjct: 234 PMHKLFLEMLE 244
>1l2j_A Estrogen receptor beta; nuclear receptor, transcription factor,
antagonist transcription receptor; HET: ETC; 2.95A {Homo
sapiens} SCOP: a.123.1.1
Length = 271
Score = 43.1 bits (101), Expect = 4e-06
Identities = 5/48 (10%), Positives = 15/48 (31%)
Query: 49 TQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
+++ Q R + ++L ++ + +E L
Sbjct: 202 ALVWVIAKSGISSQQQSMRLANLLMLLSHVRHASNKGMEHLLNMKCKN 249
>1xpc_A Estrogen receptor; nuclear receptor, transcription factor,
ER-alpha, antagonist hormone-growth factor receptor
complex; HET: AIT; 1.60A {Homo sapiens} SCOP: a.123.1.1
PDB: 1sj0_A* 1xp1_A* 1xp9_A* 1xp6_A* 1yim_A* 1yin_A*
3ert_A* 1r5k_A* 3erd_A* 1l2i_A* 2iok_A* 1a52_A* 2ouz_A*
1ere_A* 1err_A* 2qxs_A* 3q95_A* 3q97_A* 2b1z_A* 1zky_A*
...
Length = 248
Score = 42.5 bits (100), Expect = 5e-06
Identities = 8/56 (14%), Positives = 18/56 (32%), Gaps = 3/56 (5%)
Query: 44 AIQGHTQIFLNKYI---HTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
+ L + Q R ++ LIL ++ + + +E L+
Sbjct: 171 RVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCKN 226
>3u9q_A Peroxisome proliferator-activated receptor gamma; nuclear receptor,
adipogenesis, RXRA, nucleus, transcription; HET: DKA;
1.52A {Homo sapiens} PDB: 1i7i_A* 3ty0_A* 1zeo_A*
2p4y_A* 3et3_A* 3et0_A* 2hwq_A* 2ath_A* 2f4b_A* 2g0g_A*
2g0h_A* 2gtk_A* 2fvj_A* 2hwr_A* 2prg_A* 2q8s_A* 3fej_A*
3g9e_A* 3gbk_A* 3ia6_A* ...
Length = 269
Score = 42.4 bits (100), Expect = 5e-06
Identities = 11/68 (16%), Positives = 26/68 (38%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
IQ + L + +P F K+ + L+ I + ++ L + ++
Sbjct: 201 DIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHP 260
Query: 104 TIWHMYKN 111
+ +YK+
Sbjct: 261 LLQEIYKD 268
>3oll_A Estrogen receptor beta; steroid binding, phosphorylation, hormone
receptor-activator; HET: PTR EST; 1.50A {Homo sapiens}
PDB: 1u3s_A* 1u3q_A* 1x78_A* 1x7b_A* 1x7j_A* 1x76_A*
2yjd_A* 3ols_A* 3omo_A* 3omp_A* 3omq_A* 1u3r_A* 1u9e_A*
1qkm_A* 2giu_A* 1nde_A* 2jj3_A* 2i0g_A* 2qtu_A* 2z4b_A*
...
Length = 240
Score = 42.0 bits (99), Expect = 7e-06
Identities = 5/48 (10%), Positives = 15/48 (31%)
Query: 49 TQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
+++ Q R + ++L ++ + +E L
Sbjct: 176 ALVWVIAKSGISSQQQSMRLANLLMLLSHVRHASNKGMEHLLNMKCKN 223
>3cqv_A Nuclear receptor subfamily 1 group D member 2; reverb beta, heme,
NR1D2, DNA-binding, metal-binding, nucleus, repressor,
transcription; HET: HEM; 1.90A {Homo sapiens} PDB:
2v7c_A 2v0v_A
Length = 199
Score = 41.6 bits (98), Expect = 8e-06
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFF 91
+Q L I +P++ + F K+ L LP L+S+ ++ EEL
Sbjct: 148 LQETLIRALRTLIMKNHPNEASIFTKLLLKLPDLRSLNNMHSEELLA 194
>3ipq_A Oxysterols receptor LXR-alpha; LXR homodimer, LXR signaling,
alternative DNA-binding, metal-binding, nucleus,
polymorphism, receptor transcription; HET: 965; 2.00A
{Homo sapiens} PDB: 3ips_A* 3ipu_A* 3fc6_B* 3fal_B*
1uhl_B* 2acl_B* 1upv_A* 1upw_A* 1p8d_A* 1pq9_A* 1pq6_A*
1pqc_A* 3kfc_A* 4dk7_A* 4dk8_A* 3l0e_A*
Length = 283
Score = 41.7 bits (98), Expect = 9e-06
Identities = 10/47 (21%), Positives = 23/47 (48%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFF 91
+Q L+ Y+ +P F ++ + L L+++ S+ E++F
Sbjct: 217 LQHTYVEALHAYVSIHHPHDRLMFPRMLMKLVSLRTLSSVHSEQVFA 263
>3n00_A REV-ERBA-alpha; reverba ncorid1, anti-parallel B-sheet,
transcription regula; 2.60A {Homo sapiens}
Length = 245
Score = 41.7 bits (98), Expect = 1e-05
Identities = 12/53 (22%), Positives = 24/53 (45%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 97
+Q L + P + +RF K+ L LP L+++ ++ E+L +
Sbjct: 193 LQETLLRALRALVLKNRPLETSRFTKLLLKLPDLRTLNNMHSEKLLSFRVDAQ 245
>1ovl_A Orphan nuclear receptor NURR1 (MSe 414, 496, 511); NUUR1, LBD,
transcription; 2.20A {Homo sapiens} SCOP: a.123.1.1
Length = 271
Score = 41.6 bits (98), Expect = 1e-05
Identities = 9/55 (16%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 44 AIQGHTQIFLNKYIHTVYP--SQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
+Q L ++ ++P K+ LP L+++ + L+ +F+ +
Sbjct: 199 ELQNKIVNCLKDHVTFNNGGLNRPNYLSKLLGKLPELRTLCTQGLQRIFYLKLED 253
>1yye_A ER-beta, estrogen receptor beta; ER-beta, nuclear receptor,
transcription factor, agonist; HET: 196; 2.03A {Homo
sapiens} SCOP: a.123.1.1 PDB: 1yy4_A*
Length = 268
Score = 41.4 bits (97), Expect = 1e-05
Identities = 5/48 (10%), Positives = 15/48 (31%)
Query: 49 TQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
+++ Q R + ++L ++ + +E L
Sbjct: 174 ALVWVIAKSGISSQQQSMRLANLLMLLSHVRHASNKGMEHLLNMKCKN 221
>3kmr_A Retinoic acid receptor alpha; nuclear receptor transcription factor
ligand binding domain, binding, metal-binding, nucleus,
phosphoprotein; HET: EQN; 1.80A {Homo sapiens} PDB:
3kmz_B* 3a9e_B* 4dm6_A* 1xap_A* 4dm8_A* 2lbd_A* 3lbd_A*
4lbd_A*
Length = 266
Score = 41.2 bits (97), Expect = 1e-05
Identities = 12/54 (22%), Positives = 22/54 (40%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 97
+Q L Y+ PS+P F K+ + + L+SI + E + +
Sbjct: 195 MLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIP 248
>1yje_A Orphan nuclear receptor NR4A1; NGFI-B, NUR77, ligand-binding
domain, novel coregulator interface, cell-specific;
2.40A {Rattus norvegicus} PDB: 2qw4_A
Length = 264
Score = 41.3 bits (97), Expect = 1e-05
Identities = 9/70 (12%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Query: 44 AIQGHTQIFLNKYIHTVY--PSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTI 101
+Q L +++ V P + ++ LP L+++ + L+ +F +
Sbjct: 192 ELQNRIASCLKEHMAAVAGDPQPASCLSRLLGKLPELRTLCTQGLQRIFCLKLEDL-VPP 250
Query: 102 KKTIWHMYKN 111
+ ++ +
Sbjct: 251 PPIVDKIFMD 260
>1fcy_A RAR-gamma-1, retinoic acid receptor gamma-1; isotype selectivity,
retinoid ligand complexes, drug design, antiparallel
alpha-helical sandwich fold; HET: 564 LMU; 1.30A {Homo
sapiens} SCOP: a.123.1.1 PDB: 1fcz_A* 1fcx_A* 1fd0_A*
1exa_A* 1exx_A* 1dkf_B*
Length = 236
Score = 40.8 bits (96), Expect = 2e-05
Identities = 10/45 (22%), Positives = 17/45 (37%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 97
L Y PSQP F ++ + + L+ I + E +
Sbjct: 180 LRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKMEIP 224
>1osh_A BIle acid receptor; nuclear receptor, ligand binding domain,
transcription; HET: FEX; 1.80A {Homo sapiens} SCOP:
a.123.1.1 PDB: 3l1b_A* 3bej_A* 3fli_A* 3hc5_A* 3rvf_A*
3dct_A* 3dcu_A* 3ruu_A* 3rut_A* 3olf_A* 3okh_A* 3fxv_A*
3oki_A* 3omk_A* 3omm_A* 3oof_A* 3ook_A* 3hc6_A* 3p89_A*
3p88_A* ...
Length = 232
Score = 40.4 bits (95), Expect = 3e-05
Identities = 9/39 (23%), Positives = 12/39 (30%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFF 91
L K P P F + L L++ E L
Sbjct: 175 LQKLCKIHQPENPQHFACLLGRLTELRTFNHHHAEMLMS 213
>2ocf_A Estrogen receptor; estrogen receptor, LBD, monobody, estradiol,
hormone-growth complex; HET: CME EST; 2.95A {Homo
sapiens}
Length = 298
Score = 40.2 bits (94), Expect = 3e-05
Identities = 8/55 (14%), Positives = 18/55 (32%), Gaps = 3/55 (5%)
Query: 45 IQGHTQIFLNKYI---HTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
+ L + Q R ++ LIL ++ + + +E L+
Sbjct: 181 VLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCKN 235
>2hc4_A Vitamin D receptor; alpha helical sandwich, gene regulation; HET:
VDX; 2.20A {Danio rerio} PDB: 2hbh_A* 2hcd_A* 3dr1_A*
3o1d_A* 3o1e_A*
Length = 302
Score = 40.2 bits (94), Expect = 4e-05
Identities = 10/48 (20%), Positives = 18/48 (37%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFF 91
A+Q L YI +P + K+ L L+S+ ++
Sbjct: 231 ALQDRLCDVLQAYIRIQHPGGRLLYAKMIQKLADLRSLNEEHSKQYRS 278
>1xdk_B RAR-beta, retinoic acid receptor, beta; nuclear receptor,
coactivator, ligand, hormone/growth factor receptor
complex; HET: REA; 2.90A {Mus musculus} SCOP: a.123.1.1
Length = 303
Score = 39.4 bits (92), Expect = 6e-05
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFF 91
+Q L YI PS+P F KI + + L+SI + E +
Sbjct: 198 KLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVIT 245
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 7e-05
Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 21/93 (22%)
Query: 21 IRNAYTSRRGSRVRFKTGSK---FTAAIQGHTQIFL--------NKY------IHTVYPS 63
I+N T+R ++ F S F A +G+ Q+ + Y ++ Y
Sbjct: 123 IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHV 182
Query: 64 QPTRFCKIQLILPRLKSIPSLVL--EELFFRNI 94
I+ L + L E++F + +
Sbjct: 183 LVGDL--IKFSAETLSELIRTTLDAEKVFTQGL 213
>1pdu_A DHR38, nuclear hormone receptor HR38; nuclear receptor,
ligand-binding domain, hormone/growth factor receptor
complex; 2.30A {Drosophila melanogaster} SCOP: a.123.1.1
Length = 244
Score = 38.5 bits (90), Expect = 1e-04
Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQP--TRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 97
+Q L ++ +Q F ++ LP L+S+ L+ +F+ +
Sbjct: 172 QLQMKIIGSLRDHVTYNAEAQKKQHYFSRLLGKLPELRSLSVQGLQRIFYLKLEDL 227
>3ilz_A Thyroid hormone receptor, alpha isoform 1 variant; nuclear
receptor, signaling protein; HET: B72; 1.85A {Homo
sapiens} PDB: 3jzb_A* 3hzf_A* 2h79_A* 2h77_A* 1nav_A*
3uvv_A* 1xzx_X* 1y0x_X* 1nq1_A* 3jzc_A* 1nuo_A* 3imy_A*
1nq0_A* 1bsx_A* 1r6g_A* 1nq2_A* 3gws_X* 1n46_A* 2h6w_X*
2j4a_A* ...
Length = 267
Score = 38.3 bits (89), Expect = 2e-04
Identities = 5/39 (12%), Positives = 14/39 (35%)
Query: 53 LNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFF 91
Y++ + P + K+ + + L+ I +
Sbjct: 206 FEHYVNHRKHNIPHFWPKLLMKVTDLRMIGAXHASRFLH 244
>3vhv_A Mineralocorticoid receptor; nuclear receptor, transcription factor,
activating mutation, hypertension, non-steroidal
antagonist; HET: LD1 LD2; 1.35A {Homo sapiens} PDB:
2aax_A* 2aa6_A* 2ab2_A* 2aa2_A* 2aa5_A* 2aa7_A* 2a3i_A*
1y9r_A* 1ya3_A* 2oax_A* 2abi_A* 2q1h_A* 2q1v_A* 2q3y_A*
3ry9_A*
Length = 260
Score = 38.0 bits (88), Expect = 2e-04
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 53 LNKYI---HTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 97
L K + RF ++ +L + + S +LE F+ H
Sbjct: 179 LRKMVTKCPNNSGQSWQRFYQLTKLLDSMHDLVSDLLEFCFYTFRESH 226
>3mnp_A Glucocorticoid receptor; protein-ligand complex, steroid nuclear
receptor, mouse GR, hormone receptor; HET: DEX; 1.50A
{Mus musculus} PDB: 3mno_A* 3mne_A* 1m2z_A* 3k22_A*
3cld_A* 3k23_A* 3e7c_A* 1nhz_A* 1p93_A* 3bqd_A* 3h52_A*
3gn8_A* 4e2j_A*
Length = 261
Score = 38.0 bits (88), Expect = 2e-04
Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 3/50 (6%)
Query: 45 IQGHTQIFLNKYI---HTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFF 91
I+ L K I RF ++ +L + + +L F
Sbjct: 173 IRMTYIKELGKAIAKRGGNSSQNWQRFYQLTKLLDSMHDVVENLLSYCFQ 222
>3vhu_A Mineralocorticoid receptor; nuclear receptor, transcription factor,
activating mutation, hypertension, antagonist,
spironolactone; HET: SNL; 2.11A {Homo sapiens}
Length = 294
Score = 36.9 bits (85), Expect = 5e-04
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 53 LNKYI---HTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 97
L K + RF ++ +L + + S +LE F+ H
Sbjct: 213 LRKMVTKCPNNSGQSWQRFYQLTKLLDSMHDLVSDLLEFCFYTFRESH 260
>1t7r_A Androgen receptor; nuclear receptor, transcription factor, ligand
binding domain, AF-2, androgen, testosterone, DHT,
alpha-helical sandwich; HET: DHT; 1.40A {Pan
troglodytes} SCOP: a.123.1.1 PDB: 1t73_A* 1t76_A*
1t74_A* 1t79_A* 1t7m_A* 1t7f_A* 1t7t_A* 2am9_A* 2ama_A*
2amb_A* 2pnu_A* 1e3g_A* 2q7i_A* 1xj7_A* 2q7j_A* 3g0w_A*
2ihq_A* 2nw4_A* 1i37_A* 2q7k_A* ...
Length = 269
Score = 36.8 bits (85), Expect = 5e-04
Identities = 8/50 (16%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 45 IQGHTQIFLNKYIHTVY---PSQPTRFCKIQLILPRLKSIPSLVLEELFF 91
++ + L++ I S RF ++ +L ++ I + + F
Sbjct: 180 LRMNYIKELDRIIACKRKNPTSCSRRFYQLTKLLDSVQPIARELHQFTFD 229
>2p54_A PPAR-alpha, peroxisome proliferator-activated receptor alpha; PPAR
alpha GW735 SRC1 agonist HDLC, transcription; HET: 735;
1.79A {Homo sapiens} SCOP: a.123.1.1 PDB: 3fei_A*
1i7g_A* 3kdu_A* 3kdt_A* 2rew_A* 1kkq_A* 3g8i_A* 3et1_A*
2znn_A* 3sp6_A* 1k7l_A* 2npa_A* 2xyj_A* 2xyw_A* 2xyx_A*
2q5g_A* 3gwx_A* 3dy6_A* 1gwx_A* 3peq_A* ...
Length = 267
Score = 36.4 bits (84), Expect = 8e-04
Identities = 6/47 (12%), Positives = 18/47 (38%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFF 91
+Q L ++ + +P F K+ + L+ + + + +
Sbjct: 199 MQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMADLRQLVTEHAQLVQI 245
>1sqn_A PR, progesterone receptor; nuclear receptor, steroid receptor,
norethindrone, birth control, hormone/growth factor
receptior complex; HET: NDR; 1.45A {Homo sapiens} SCOP:
a.123.1.1 PDB: 3g8o_A* 3g8n_A* 3d90_A* 1e3k_A* 1sr7_A*
1zuc_B* 3zr7_A* 2w8y_A* 3zra_A* 3zrb_A* 4a2j_A* 4apu_A*
1a28_A* 2ovh_A* 2ovm_A* 3hq5_A* 3kba_A*
Length = 261
Score = 36.0 bits (83), Expect = 0.001
Identities = 7/49 (14%), Positives = 14/49 (28%), Gaps = 3/49 (6%)
Query: 45 IQGHTQIFLNKYIHTVYPS---QPTRFCKIQLILPRLKSIPSLVLEELF 90
++ L K I RF ++ +L L + +
Sbjct: 172 MRSSYIRELIKAIGLRQKGVVSSSQRFYQLTKLLDNLHDLVKQLHLYCL 220
>3up3_A Acedaf-12; ligand binding domain, nematode, steroid binding
protein- transcription complex; HET: XCA; 1.25A
{Ancylostoma ceylanicum} PDB: 3up0_A*
Length = 243
Score = 35.2 bits (81), Expect = 0.002
Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTR-FCKIQLILPRLKSIPSLVLEELFFRNI 94
LN+Y+ ++Y + ++ L L+ I S LF +
Sbjct: 177 RHHEQFSALLNRYLESLYGDDAHQLNEQLPTALRMLREI-SASSGMLFLGTV 227
>1nrl_A Orphan nuclear receptor PXR; PXR, xenobiotic, SRC-1, ligand binding
domain, transcription; HET: SRL; 2.00A {Homo sapiens}
SCOP: a.123.1.1 PDB: 1ilh_A* 1ilg_A* 1m13_A* 2qnv_A*
3r8d_A* 3ctb_A 3ctc_A 3hvl_A* 1skx_A* 2o9i_A*
Length = 316
Score = 34.1 bits (78), Expect = 0.004
Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 53 LNKYIHTVYPSQPTR--FCKIQLILPRLKSIPSLVLEELFFRNIIGH 97
L YI P R F KI +L L+SI + + L I
Sbjct: 255 LKSYIECNRPQPAHRFLFLKIMAMLTELRSINAQHTQRLLRIQDIHP 301
>1z5x_E Ecdysone receptor ligand binding domain; ponasterone A, nuclear
receptor, ECR, USP, hormone/growth factor receptor
complex; HET: P1A; 3.07A {Bemisia tabaci}
Length = 310
Score = 34.0 bits (78), Expect = 0.005
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 53 LNKYIHTVY-PSQPTRFCKIQLILPRLKSIPSLVLEELFF 91
L Y+ P T F K+ +L L+++ ++ E F
Sbjct: 251 LKAYVENRRKPYATTIFAKLLSVLTELRTLGNMNSETCFS 290
>1n83_A Nuclear receptor ROR-alpha; three-layered alpha helical sandwich,
transcription regulation, nuclear protein, DNA binding,
lipid binding protein; HET: CLR; 1.63A {Homo sapiens}
SCOP: a.123.1.1 PDB: 1s0x_A*
Length = 270
Score = 32.9 bits (75), Expect = 0.012
Identities = 7/47 (14%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFF 91
+Q Q+ L + + + K+ + L+++ E+L
Sbjct: 192 LQQKIQLALQHVLQKNHR-EDGILTKLICKVSTLRALCGRHTEKLMA 237
>1xvp_B Orphan nuclear receptor NR1I3; CAR, RXR, citco, SRC1, DNA binding
protein; HET: F15 CID; 2.60A {Homo sapiens} SCOP:
a.123.1.1 PDB: 1xv9_B* 1xnx_A* 1xls_E*
Length = 246
Score = 32.7 bits (75), Expect = 0.013
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 53 LNKYIHTVY--PSQPTRFCKIQLILPRLKSIPSLVLEELFF 91
L YI P + K+ +L L+SI ++
Sbjct: 190 LQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQH 230
>2nxx_E Ecdysone receptor (ECR, NRH1); hormone receptor, APO and holo
ligand binding pocket, hormone/growth factor complex;
HET: P1A; 2.75A {Tribolium castaneum}
Length = 248
Score = 32.7 bits (75), Expect = 0.013
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 53 LNKYIHTVYPSQP-TRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 97
L Y+ +P T F K+ +L L+++ + E F +
Sbjct: 187 LRAYVDNRRKPKPGTIFAKLLSVLTELRTLGNQNSEMCFSLKLKNK 232
>1nq7_A Nuclear receptor ROR-beta; ligand-binding domain, retinoids,
retinoic acid, synthetic ligand, antagonist,
transcription; HET: ARL; 1.50A {Rattus norvegicus} SCOP:
a.123.1.1 PDB: 1k4w_A* 1n4h_A*
Length = 244
Score = 32.1 bits (73), Expect = 0.020
Identities = 8/47 (17%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFF 91
+Q L I + K+ +P + ++ +L E+L
Sbjct: 177 LQEKIYFALQHVIQKNHL-DDETLAKLIAKIPTITAVCNLHGEKLQV 222
>3gyt_A Nuclear hormone receptor of the steroid/thyroid hormone receptors
superfamily; nuclear receptor, ligand binding domain,
dafachronic acid, nematode, DNA-binding, metal-binding,
nucleus, receptor; HET: DL4; 2.40A {Strongyloides
stercoralis} PDB: 3gyu_A*
Length = 244
Score = 32.2 bits (73), Expect = 0.020
Identities = 9/50 (18%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQ-PTRFCKIQLILPRLKSIPSLVLEELFFR 92
+ + + L++Y+++++ + RF I L L+ + + LF
Sbjct: 177 KLHRNYESLLHRYLYSIHKEEAEQRFASIPKALVALRKV-AENAVTLFLG 225
>2r40_D Ecdysone receptor, 20-hydroxy-ecdysone receptor; nuclear receptor
ligand-binding domain, anti-parallel alpha- sandwich,
ecdysone receptor, ECR, gene regulation; HET: FLC 20E
EPH; 2.40A {Heliothis virescens} SCOP: a.123.1.1 PDB:
1r1k_D* 3ixp_D* 1r20_D*
Length = 266
Score = 32.0 bits (73), Expect = 0.022
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Query: 45 IQGHTQIFLNKYIHTVYPSQP---TRFCKIQLILPRLKSIPSLVLEELFF 91
IQ + L YI + P F KI IL ++++
Sbjct: 195 IQRYYLNTLRVYILNQNSASPRCAVIFGKILGILTEIRTLGMQNSNMCIS 244
>3b0t_A Vitamin D3 receptor; nuclear receptor, transcription, gene
regulation; HET: MCZ; 1.30A {Homo sapiens} PDB: 3a40_X*
1s0z_A* 1s19_A* 2ham_A* 2har_A* 2has_A* 1txi_A* 2hb8_A*
2hb7_A* 3a3z_X* 3a78_A* 3auq_A* 3aur_A* 3ax8_A* 3cs4_A*
3cs6_A* 1ie9_A* 1db1_A* 1ie8_A* 3kpz_A* ...
Length = 254
Score = 31.3 bits (71), Expect = 0.043
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTR--FCKIQLILPRLKSIPSLVLEELFF 91
AIQ L YI +P + + K+ L L+S+ ++
Sbjct: 185 AIQDRLSNTLQTYIRCRHPPPGSHLLYAKMIQKLADLRSLNEEHSKQYRC 234
>2o4j_A Vitamin D3 receptor; nuclear receptor-ligand complex,
hormone/growth factor receptor complex; HET: VD4; 1.74A
{Rattus norvegicus} SCOP: a.123.1.1 PDB: 1rk3_A* 1rjk_A*
1rkh_A* 1rkg_A* 2o4r_A*
Length = 292
Score = 30.2 bits (68), Expect = 0.095
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 53 LNKYIHTVY--PSQPTRFCKIQLILPRLKSIPSLVLEELFF 91
L YI + P + K+ L L+S+ ++
Sbjct: 197 LQTYIRCRHPPPGSHQLYAKMIQKLADLRSLNEEHSKQYRS 237
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: d.58.7.1
Length = 124
Score = 25.6 bits (56), Expect = 3.4
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 33 VRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTRFCK-IQLILPRLKSIPS 83
V F+ + + AA+ H Q N++I V+P + I +I RL+S PS
Sbjct: 72 VEFRNEADYKAALCRHKQYMGNRFIQ-VHPITKKGMLEKIDMIRKRLQSGPS 122
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.6 bits (55), Expect = 4.8
Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 18/80 (22%)
Query: 8 MLRIVTEENSNLEIRNAYTSRRGSRVRFKTGSKFTAAIQGHTQIFLNKYIHTVYPSQPTR 67
M I TE+ + Y +R R+ + F KY V QP
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQR-DRL-YNDNQVFA------------KY--NVSRLQP-- 136
Query: 68 FCKIQLILPRLKSIPSLVLE 87
+ K++ L L+ +++++
Sbjct: 137 YLKLRQALLELRPAKNVLID 156
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.136 0.400
Gapped
Lambda K H
0.267 0.0752 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,607,261
Number of extensions: 79360
Number of successful extensions: 226
Number of sequences better than 10.0: 1
Number of HSP's gapped: 221
Number of HSP's successfully gapped: 60
Length of query: 113
Length of database: 6,701,793
Length adjustment: 77
Effective length of query: 36
Effective length of database: 4,551,876
Effective search space: 163867536
Effective search space used: 163867536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.4 bits)