RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16764
(113 letters)
>d1g2na_ a.123.1.1 (A:) Ultraspiracle protein, usp {Heliothis
virescens [TaxId: 7102]}
Length = 256
Score = 55.9 bits (134), Expect = 3e-11
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
++ + L++Y S+ RF + L LP L+SI E LFF +++ +T+I
Sbjct: 189 LREKMFLCLDEYCRRSRSSEEGRFAALLLRLPALRSISLKSFEHLFFFHLVA-DTSIAGY 247
Query: 105 IWHMYKN 111
I +N
Sbjct: 248 IRDALRN 254
>d1hg4a_ a.123.1.1 (A:) Ultraspiracle protein, usp {Drosophila
melanogaster [TaxId: 7227]}
Length = 265
Score = 52.1 bits (124), Expect = 7e-10
Identities = 13/53 (24%), Positives = 22/53 (41%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
+ L+++ +P RF ++ L LP L+SI + LF I
Sbjct: 194 MCREKVYACLDEHCRLEHPGDDGRFAQLLLRLPALRSISLKCQDHLFLFRITS 246
>d2p1ta1 a.123.1.1 (A:229-458) Retinoid-X receptor alpha (RXR-alpha)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 230
Score = 51.2 bits (122), Expect = 1e-09
Identities = 23/53 (43%), Positives = 28/53 (52%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
A++ L Y YP QP RF K+ L LP L+SI LE LFF +IG
Sbjct: 163 ALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 215
>d1pk5a_ a.123.1.1 (A:) Orphan nuclear receptor NR5a2 (LRH-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 242
Score = 50.8 bits (121), Expect = 2e-09
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
+Q L Y YP Q +F ++ L LP L++I + L+++++ G
Sbjct: 174 GVQEQVNAALLDYTVCNYPQQTEKFGQLLLRLPELRAISKQAEDYLYYKHVNG 226
>d1pzla_ a.123.1.1 (A:) Hepatocyte nuclear factor 4-alpha {Human
(Homo sapiens) [TaxId: 9606]}
Length = 233
Score = 48.1 bits (114), Expect = 2e-08
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
++ Q+ L YI+ RF ++ L+LP L+SI ++E++ F + G
Sbjct: 166 LRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKLFG 217
>d1fcya_ a.123.1.1 (A:) Retinoic acid receptor gamma (RAR-gamma)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 236
Score = 47.3 bits (112), Expect = 3e-08
Identities = 11/57 (19%), Positives = 19/57 (33%)
Query: 41 FTAAIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 97
+Q L Y PSQP F ++ + + L+ I + E +
Sbjct: 168 KVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKMEIP 224
>d2e2ra1 a.123.1.1 (A:234-456) Orphan nuclear receptor ERR3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 223
Score = 47.3 bits (112), Expect = 3e-08
Identities = 10/54 (18%), Positives = 20/54 (37%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 97
+Q L Y + P R K+ + LP L+ + ++ + + G
Sbjct: 157 KLQDVLHEALQDYEAGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEGK 210
>d2fvja1 a.123.1.1 (A:207-477) Peroxisome proliferator activated
receptor gamma, PPAR-gamma {Human (Homo sapiens) [TaxId:
9606]}
Length = 271
Score = 45.0 bits (106), Expect = 3e-07
Identities = 11/67 (16%), Positives = 26/67 (38%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
IQ + L + +P F K+ + L+ I + ++ L + ++
Sbjct: 203 IQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPL 262
Query: 105 IWHMYKN 111
+ +YK+
Sbjct: 263 LQEIYKD 269
>d1xpca_ a.123.1.1 (A:) Estrogen receptor alpha {Human (Homo
sapiens) [TaxId: 9606]}
Length = 245
Score = 44.3 bits (104), Expect = 4e-07
Identities = 8/56 (14%), Positives = 18/56 (32%), Gaps = 3/56 (5%)
Query: 44 AIQGHTQIFLNKYI---HTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
+ L + Q R ++ LIL ++ + + +E L+
Sbjct: 171 RVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCKN 226
>d1pq9a_ a.123.1.1 (A:) Oxysterols receptor LXR-beta {Human (Homo
sapiens) [TaxId: 9606]}
Length = 239
Score = 44.3 bits (104), Expect = 5e-07
Identities = 11/53 (20%), Positives = 22/53 (41%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 97
+Q L Y P RF ++ + L L+++ S+ E++F +
Sbjct: 176 LQQPYVEALLSYTRIKRPQDQLRFPRMLMKLVSLRTLSSVHSEQVFALRLQDK 228
>d1osha_ a.123.1.1 (A:) Bile acid receptor FXR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 231
Score = 44.2 bits (104), Expect = 5e-07
Identities = 10/47 (21%), Positives = 14/47 (29%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFF 91
+Q L K P P F + L L++ E L
Sbjct: 167 LQEPLLDVLQKLCKIHQPENPQHFACLLGRLTELRTFNHHHAEMLMS 213
>d2p54a1 a.123.1.1 (A:202-468) Peroxisome proliferator activated
receptor alpha, PPAR-alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 267
Score = 43.8 bits (103), Expect = 7e-07
Identities = 7/68 (10%), Positives = 25/68 (36%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
+Q L ++ + +P F K+ + L+ + + + + + +
Sbjct: 198 KMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMADLRQLVTEHAQLVQIIKKTESDAALHP 257
Query: 104 TIWHMYKN 111
+ +Y++
Sbjct: 258 LLQEIYRD 265
>d1n46a_ a.123.1.1 (A:) Thyroid hormone receptor beta (TR-beta)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 43.1 bits (101), Expect = 1e-06
Identities = 6/67 (8%), Positives = 19/67 (28%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKKT 104
Q + YI+ + K+ + + L+ I + +
Sbjct: 185 YQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPL 244
Query: 105 IWHMYKN 111
++++
Sbjct: 245 FLEVFED 251
>d1ovla_ a.123.1.1 (A:) Orphan nuclear receptor NURR1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 236
Score = 41.5 bits (97), Expect = 4e-06
Identities = 9/56 (16%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 44 AIQGHTQIFLNKYIHTVYP--SQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 97
+Q L ++ ++P K+ LP L+++ + L+ +F+ +
Sbjct: 164 ELQNKIVNCLKDHVTFNNGGLNRPNYLSKLLGKLPELRTLCTQGLQRIFYLKLEDL 219
>d1pdua_ a.123.1.1 (A:) Nuclear hormone receptor HR38 {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 230
Score = 41.5 bits (97), Expect = 4e-06
Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 45 IQGHTQIFLNKYIHTVYPSQ--PTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 97
+Q L ++ +Q F ++ LP L+S+ L+ +F+ +
Sbjct: 162 LQMKIIGSLRDHVTYNAEAQKKQHYFSRLLGKLPELRSLSVQGLQRIFYLKLEDL 216
>d2qw4a1 a.123.1.1 (A:32-264) Orphan nuclear receptor NR4A1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 233
Score = 41.2 bits (96), Expect = 5e-06
Identities = 9/55 (16%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 45 IQGHTQIFLNKYIHTV--YPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 97
+Q L +++ V P + ++ LP L+++ + L+ +F+ +
Sbjct: 165 LQNRIASCLKEHVAAVAGEPQPASCLSRLLGKLPELRTLCTQGLQRIFYLKLEDL 219
>d2b50b1 a.123.1.1 (B:211-475) Peroxisome proliferator-activated
receptor delta, PPAR-DELTA {Human (Homo sapiens) [TaxId:
9606]}
Length = 265
Score = 41.1 bits (96), Expect = 5e-06
Identities = 11/69 (15%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELF-FRNIIGHNTTIK 102
AIQ L ++ +P F K+ + L+ + + + + + T++
Sbjct: 198 AIQDTILRALEFHLQANHPDAQQLFPKLLQKMADLRQLVTEHAQMMQRIKKTET-ETSLH 256
Query: 103 KTIWHMYKN 111
+ +YK+
Sbjct: 257 PLLQEIYKD 265
>d2j7ya1 a.123.1.1 (A:217-452) Estrogen receptor beta {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 236
Score = 41.2 bits (96), Expect = 6e-06
Identities = 6/40 (15%), Positives = 13/40 (32%)
Query: 58 HTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGH 97
Q R + ++L ++ I + +E L
Sbjct: 184 GISSQQQSVRLANLLMLLSHVRHISNKGMEHLLSMKCKNV 223
>d3d24a1 a.123.1.1 (A:194-420) Steroid hormone receptor ERR1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 227
Score = 40.8 bits (95), Expect = 7e-06
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 53 LNKYIHTVY----PSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIG 96
L +Y ++ R ++ L LP L+ VL + + G
Sbjct: 166 LLEYEAGRAGPGGGAERRRAGRLLLTLPLLRQTAGKVLAHFYGVKLEG 213
>d1sqna_ a.123.1.1 (A:) Progesterone receptor {Human (Homo sapiens)
[TaxId: 9606]}
Length = 251
Score = 38.5 bits (89), Expect = 5e-05
Identities = 9/60 (15%), Positives = 18/60 (30%), Gaps = 6/60 (10%)
Query: 44 AIQGHTQIFLNKYI---HTVYPSQPTRFCKIQLILPRLKSIPSLVLE---ELFFRNIIGH 97
++ L K I S RF ++ +L L + + F ++
Sbjct: 162 EMRSSYIRELIKAIGLRQKGVVSSSQRFYQLTKLLDNLHDLVKQLHLYCLNTFIQSRALS 221
>d1nrla_ a.123.1.1 (A:) Pregnane x receptor, PXR {Human (Homo
sapiens) [TaxId: 9606]}
Length = 292
Score = 37.0 bits (85), Expect = 2e-04
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 45 IQGHTQIFLNKYIHTVYPSQP--TRFCKIQLILPRLKSIPSLVLEELFF 91
+Q I L YI P F KI +L L+SI + + L
Sbjct: 224 LQEQFAITLKSYIECNRPQPAHRFLFLKIMAMLTELRSINAQHTQRLLR 272
>d1n83a_ a.123.1.1 (A:) Orphan nuclear receptor ROR-alpha {Human
(Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 36.6 bits (84), Expect = 2e-04
Identities = 8/56 (14%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTT 100
+Q Q+ L + + + K+ + L+++ E+L I +
Sbjct: 185 LQQKIQLALQHVLQKNHR-EDGILTKLICKVSTLRALCGRHTEKLMAFKAIYPDIV 239
>d1nq7a_ a.123.1.1 (A:) Orphan nuclear receptor ROR-beta {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 244
Score = 35.9 bits (82), Expect = 4e-04
Identities = 11/67 (16%), Positives = 22/67 (32%), Gaps = 2/67 (2%)
Query: 44 AIQGHTQIFLNKYIHTVYPSQPTRFCKIQLILPRLKSIPSLVLEELFFRNIIGHNTTIKK 103
+Q L I + K+ +P + ++ +L E+L H +
Sbjct: 176 KLQEKIYFALQHVIQKNHL-DDETLAKLIAKIPTITAVCNLHGEKLQVFKQS-HPDIVNT 233
Query: 104 TIWHMYK 110
+YK
Sbjct: 234 LFPPLYK 240
>d1t7ra_ a.123.1.1 (A:) Androgen receptor {Chimpanzee (Pan
troglodytes) [TaxId: 9598]}
Length = 250
Score = 35.9 bits (82), Expect = 4e-04
Identities = 7/59 (11%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Query: 45 IQGHTQIFLNKYIHTVYPS---QPTRFCKIQLILPRLKSIPSLVLE---ELFFRNIIGH 97
++ + L++ I + RF ++ +L ++ I + + +L ++ +
Sbjct: 162 LRMNYIKELDRIIACKRKNPTSCSRRFYQLTKLLDSVQPIARELHQFTFDLLIKSHMVS 220
>d1xvpb_ a.123.1.1 (B:) Orphan nuclear receptor NR1I3 (CAR) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 246
Score = 35.4 bits (81), Expect = 6e-04
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 44 AIQGHTQIFLNKYIHTVY--PSQPTRFCKIQLILPRLKSIPSLVLEELFF 91
+Q + L YI P + K+ +L L+SI ++
Sbjct: 181 QLQEEMALTLQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQH 230
>d2r40d1 a.123.1.1 (D:287-529) Ecdysone receptor {Noctuid moth
(Heliothis virescens) [TaxId: 7102]}
Length = 243
Score = 34.2 bits (78), Expect = 0.002
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Query: 45 IQGHTQIFLNKYIHTVYPSQP---TRFCKIQLILPRLKSIPSLVLEELFF 91
IQ + L YI + P F KI IL ++++
Sbjct: 175 IQRYYLNTLRVYILNQNSASPRCAVIFGKILGILTEIRTLGMQNSNMCIS 224
>d1ie9a_ a.123.1.1 (A:) Vitamin D nuclear receptor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 255
Score = 33.9 bits (77), Expect = 0.002
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Query: 45 IQGHTQIFLNKYIHTVYP--SQPTRFCKIQLILPRLKSIPSLVLEELFF 91
IQ L YI +P + K+ L L+S+ ++
Sbjct: 187 IQDRLSNTLQTYIRCRHPPPGSHLLYAKMIQKLADLRSLNEEHSKQYRC 235
>d1nhza_ a.123.1.1 (A:) Glucocorticoid receptor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 247
Score = 33.9 bits (77), Expect = 0.002
Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 5/50 (10%)
Query: 53 LNKYI---HTVYPSQPTRFCKIQLILPRLKSIPSLVLEELF--FRNIIGH 97
L K I RF ++ +L + + +L F F +
Sbjct: 168 LGKAIVKREGNSSQNWQRFYQLTKLLDSMHEVVENLLNYCFQTFLDKTMS 217
>d1xnxa_ a.123.1.1 (A:) Orphan nuclear receptor NR1I3 (CAR) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 232
Score = 30.8 bits (69), Expect = 0.025
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 45 IQGHTQIFLNKYIHTVYPSQPTR--FCKIQLILPRLKSIPSLVLEEL 89
+Q + LN +I +R + K+ +L L+SI + EL
Sbjct: 181 LQEEMALILNNHIMEQQSRLQSRFLYAKLMGLLADLRSINNAYSYEL 227
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.136 0.400
Gapped
Lambda K H
0.267 0.0535 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 404,115
Number of extensions: 16075
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 33
Length of query: 113
Length of database: 2,407,596
Length adjustment: 71
Effective length of query: 42
Effective length of database: 1,432,766
Effective search space: 60176172
Effective search space used: 60176172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.3 bits)