BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16766
(621 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|328784193|ref|XP_001121092.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Apis
mellifera]
Length = 1708
Score = 367 bits (941), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 213/520 (40%), Positives = 314/520 (60%), Gaps = 28/520 (5%)
Query: 114 ITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDP 173
+T + + P+ L +T +++ LSV K+ +P++FN LGH + GGLYD A+GP+ E DP
Sbjct: 11 LTPKHLDPKCLMFSMFTANDIRNLSVAKIRTPLSFNILGHPLKGGLYDPALGPLLESSDP 70
Query: 174 CTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQ 233
C TCG N KC GH GHIELP+PVIN LF + + +L+KL+C C + IP+ +LL +
Sbjct: 71 CGTCGCNVFKCPGHFGHIELPMPVINPLFHKGLCMLIKLACLNCFNLQIPSYVKLLLSAK 130
Query: 234 IKLLDAGYVTQAKDLEE----TLFNEENLRLHPAQLVQ-LVDSHVQSILAHGT------- 281
+KLL GY++ + LE+ +FN +N Q VQ ++D++++++L
Sbjct: 131 LKLLQQGYLSDLESLEQEVMIVVFNSDNPYNVDIQSVQNVIDNYIENLLNKQRFNQSFVQ 190
Query: 282 -KICDINDYKGGEELRSAFVAQVLSRHVKRK-CIFCATPINAISYQQRKIIKSFKIDKDN 339
DIN + + V VL ++ K C++C PI+ I+ + KI+ + KI N
Sbjct: 191 YDETDINTKNINTQWHTC-VENVLKQYTTPKICVYCEEPISKITTLKNKIMTT-KIS--N 246
Query: 340 LDQSLDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIA 399
L +S +I K + +M + + +KLW NE FLK +IP
Sbjct: 247 LSNETIQS-----RGVIHKLDTIMIMPDQSKDYLRKLWQNEKNFLKVIIPCFGMVDIEYP 301
Query: 400 TDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDL 459
TDI F + V P +RP++ +EH ++++Y+SI+ C L+++I +++ + L
Sbjct: 302 TDIFFFEVIPVLPPIVRPVNFINGQMIEHPQSQVYKSIIQDCLVLRNIIQTIQDGDTEQL 361
Query: 460 LSEA---LKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGK 516
E I+G+T KL N+W LQ NVD LMD ++N+TT + GLKQ+++ K
Sbjct: 362 PEEGKVVYDHIKGNTAIEKLHNAWQNLQVNVDHLMDR--DMNRTTDSANCQGLKQVIEKK 419
Query: 517 TGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMV 576
G+IR +MMGKRVNFA RSVITPDP LNID IG+P FA LTYP PVTPWNV LR++V
Sbjct: 420 EGIIRMHMMGKRVNFAARSVITPDPNLNIDEIGIPEAFALKLTYPTPVTPWNVVQLRQLV 479
Query: 577 INGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLIT 616
+NGPN++PGA MI+NEDGS+ RIS S A+QRE++AKRL+T
Sbjct: 480 LNGPNIHPGAVMIENEDGSIQRISISDAIQREAIAKRLLT 519
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/113 (58%), Positives = 83/113 (73%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVITPDP LNID IG+P FA LTYP PVTPWNV LR++V+NGPN++PGA MI+
Sbjct: 434 FAARSVITPDPNLNIDEIGIPEAFALKLTYPTPVTPWNVVQLRQLVLNGPNIHPGAVMIE 493
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKIITRQEVVPEILKL 126
NEDGS+ RIS S A+QRE++AKRL+T D+ ++ KI+ R +IL L
Sbjct: 494 NEDGSIQRISISDAIQREAIAKRLLTTSDKANKFFKGIKIVHRHLQNGDILLL 546
>gi|380020146|ref|XP_003693956.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I
subunit RPA1-like [Apis florea]
Length = 1706
Score = 366 bits (940), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 212/520 (40%), Positives = 312/520 (60%), Gaps = 28/520 (5%)
Query: 114 ITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDP 173
+T + + P+ L +T +++ LSV K+ +P++FN LGH + GGLYD A+GP+ E DP
Sbjct: 11 LTPKHLDPKCLMFSMFTANDIRNLSVAKIRTPLSFNILGHPLKGGLYDPALGPLLESSDP 70
Query: 174 CTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQ 233
C TCG N KC GH GHIELP+PVIN LF + + +L+KL+C C + IP+ +LL +
Sbjct: 71 CGTCGCNVFKCPGHFGHIELPMPVINPLFHKGLCMLIKLACLNCFNLQIPSYVKLLLSAK 130
Query: 234 IKLLDAGYVTQAKDLEE----TLFNEENLRLHPAQLVQ-LVDSHVQSILAHGT------- 281
+KLL GY++ + LE+ +FN +N Q VQ ++D++++++
Sbjct: 131 LKLLQQGYLSDLESLEQEVMIVVFNSDNPYDVDIQSVQNVIDNYIENLFNKQRFNQSFVQ 190
Query: 282 -KICDINDYKGGEELRSAFVAQVLSRHVKRK-CIFCATPINAISYQQRKIIKSFKIDKDN 339
DIN + + V VL ++ K C++C PI+ I+ + KI+ + KI N
Sbjct: 191 YNETDINTKNINTQWHTC-VENVLKQYTTPKICVYCEEPISKITTLKNKIMTT-KIS--N 246
Query: 340 LDQSLDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIA 399
L S +I K E +M + + +KLW NE FLK +IP
Sbjct: 247 LPNE-----TMQSRGVIHKLETVMIMPDQSKDYLRKLWQNEKNFLKIIIPCFGMVDIEYP 301
Query: 400 TDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDL 459
TDI F + V P +RP++ +EH ++++Y+SI+ C L+++I +++ + L
Sbjct: 302 TDIFFFEVIPVLPPIVRPVNFINGQMIEHPQSQVYKSIIQDCLVLRNIIQTIQDGDTEQL 361
Query: 460 LSEA---LKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGK 516
E I+G+T KL N+W LQ NVD LMD ++N+T + GLKQ+++ K
Sbjct: 362 PEEGKVVYDHIKGNTAIEKLHNAWQNLQVNVDHLMDR--DMNRTADSANCQGLKQVIEKK 419
Query: 517 TGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMV 576
G+IR +MMGKRVNFA RSVITPDP LNID IG+P FA LTYP PVTPWNV LR++V
Sbjct: 420 EGIIRMHMMGKRVNFAARSVITPDPNLNIDEIGIPEAFALKLTYPTPVTPWNVVQLRQLV 479
Query: 577 INGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLIT 616
+NGPN++PGA MI+NEDGS+ RIS+S A+QRE++AKRL+T
Sbjct: 480 LNGPNIHPGAVMIENEDGSIQRISTSDAIQREAIAKRLLT 519
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/113 (58%), Positives = 84/113 (74%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVITPDP LNID IG+P FA LTYP PVTPWNV LR++V+NGPN++PGA MI+
Sbjct: 434 FAARSVITPDPNLNIDEIGIPEAFALKLTYPTPVTPWNVVQLRQLVLNGPNIHPGAVMIE 493
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKIITRQEVVPEILKL 126
NEDGS+ RIS+S A+QRE++AKRL+T D+ ++ KI+ R +IL L
Sbjct: 494 NEDGSIQRISTSDAIQREAIAKRLLTTSDKANKFFKGIKIVHRHLQNGDILLL 546
>gi|350414724|ref|XP_003490399.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Bombus
impatiens]
Length = 1713
Score = 365 bits (937), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 205/519 (39%), Positives = 311/519 (59%), Gaps = 24/519 (4%)
Query: 114 ITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDP 173
+T + + P+ L +T +++ LSV K+ +P++FN LGH + GGLYD A+G + E DP
Sbjct: 11 LTPKHLDPKCLMFSMFTANDIRNLSVTKIRTPLSFNILGHPLKGGLYDPALGSLLESSDP 70
Query: 174 CTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQ 233
C TCG N KC GH GHIELP+PV+N LF R + +L+KL+C C + IP+ +LL +
Sbjct: 71 CGTCGCNVFKCPGHFGHIELPMPVVNPLFHRRLSMLIKLACLNCFSLQIPSYVKLLLTAK 130
Query: 234 IKLLDAGYVTQAKDLEETLFNEENLRLHP----AQLVQ-LVDSHVQSILAHGTKICDIND 288
+ LL GY+++ + LE+ + + +P Q VQ ++D++ +++L I
Sbjct: 131 LNLLQKGYLSELESLEQEIMFVVSCSGNPYEVDVQAVQNVIDNYTENLLNRPKLNQSIVQ 190
Query: 289 Y-------KGGEELRSAFVAQVLSRHVKRK-CIFCATPINAISYQQRKIIKSFKIDKDNL 340
Y K A+V V+ ++ K C+ C PI I+ + KI+ + + N
Sbjct: 191 YDEIQLNTKNINMQWHAYVENVIKQYASLKICVNCQEPIPKITTLKNKIMTTKMPETPNT 250
Query: 341 DQSLDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIAT 400
+++ S +I K E +M + + +KLW NE FLK LIP T
Sbjct: 251 PRTV------KSRGVIHKLESVMIMPDQSKDYLRKLWQNERDFLKVLIPCFGMVDIEYPT 304
Query: 401 DIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLL 460
DI F + V P +RP++ +EH ++++Y+SI+ C L+++I +++ + + L
Sbjct: 305 DIFFFEVIPVLPPIVRPVNFVNGQMIEHPQSQVYKSIIQDCLVLRNIIQTIQDGDTNQLT 364
Query: 461 SEA---LKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKT 517
E + I+G+T KL N+W LQ NVD LMD ++N+T + GLKQ+++ K
Sbjct: 365 EEGKLVFEQIKGNTAVEKLHNAWQNLQINVDHLMDR--DMNRTADSANCQGLKQVIEKKE 422
Query: 518 GMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVI 577
G+IR +MMGKRVNFA RSVITPDP LNID IG+P FA LTYP PVTPWNV LR++V+
Sbjct: 423 GIIRMHMMGKRVNFAARSVITPDPNLNIDEIGIPEAFAMKLTYPTPVTPWNVVQLRQLVL 482
Query: 578 NGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLIT 616
NGPN++PGA M+++EDGS+ RIS++ AVQRE++AKRL+T
Sbjct: 483 NGPNIHPGAVMVEHEDGSIQRISNTNAVQREAIAKRLLT 521
Score = 135 bits (340), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 62/104 (59%), Positives = 80/104 (76%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVITPDP LNID IG+P FA LTYP PVTPWNV LR++V+NGPN++PGA M++
Sbjct: 436 FAARSVITPDPNLNIDEIGIPEAFAMKLTYPTPVTPWNVVQLRQLVLNGPNIHPGAVMVE 495
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKIITRQ 117
+EDGS+ RIS++ AVQRE++AKRL+T D+ ++ KII R
Sbjct: 496 HEDGSIQRISNTNAVQREAIAKRLLTTSDKANKFFKGIKIIHRH 539
>gi|340715117|ref|XP_003396066.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I
subunit RPA1-like [Bombus terrestris]
Length = 1713
Score = 365 bits (937), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 204/519 (39%), Positives = 310/519 (59%), Gaps = 24/519 (4%)
Query: 114 ITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDP 173
+T + + P+ L +T +++ LSV K+ +P++FN LGH + GGLYD +GP+ E DP
Sbjct: 11 LTPKHLDPKCLMFSMFTANDIRNLSVTKIRTPLSFNILGHPLKGGLYDPTLGPLLESSDP 70
Query: 174 CTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQ 233
C TCG N KC GH GHIELP+PV+N LF R + +L+KL+C C + IP +LL +
Sbjct: 71 CGTCGCNVFKCPGHFGHIELPMPVVNPLFHRGLFMLIKLACLNCFSLQIPPYIKLLLTAK 130
Query: 234 IKLLDAGYVTQAKDLEETLFNEENLRLHP----AQLVQ-LVDSHVQSILAHGTKICDIND 288
+ LL GY+++ +DLE+ + + +P Q VQ ++D++ +++L I
Sbjct: 131 LNLLQQGYLSELEDLEQEIMFVVSCSGNPYEVDVQAVQNVIDNYTENLLNRPRLNQRIMQ 190
Query: 289 Y-------KGGEELRSAFVAQVLSRHVKRK-CIFCATPINAISYQQRKIIKSFKIDKDNL 340
Y K +V V+ ++ K C+ C PI I+ + KI+ + + N
Sbjct: 191 YDEIQLNTKNINMQWHTYVENVIKQYATLKVCVNCQEPIPKITTXKNKIMTTKICETPNT 250
Query: 341 DQSLDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIAT 400
+++ S ++ K E +M + + +KLW NE FLK LIP T
Sbjct: 251 PRTV------KSRGVVHKLETVIIMPDQSKDYLRKLWQNERDFLKVLIPCFGMVDIEYPT 304
Query: 401 DIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLL 460
DI F + V P +RP++ +EH ++++Y+SI+ C L+++I +++ + + L
Sbjct: 305 DIFFFEVIPVLPPIVRPVNFVNGQMIEHPQSQVYKSIIQDCLVLRNIIQTIQDGDTNQLT 364
Query: 461 SEA---LKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKT 517
E + I+G+T KL N+W LQ NVD LMD ++N+T + GLKQ+++ K
Sbjct: 365 EEGKLVFEQIKGNTAIEKLHNAWQNLQINVDHLMDR--DMNRTADSANCQGLKQVIEKKE 422
Query: 518 GMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVI 577
G+IR +MMGKRVNFA RSVITPDP LNID IG+P FA LTYP PVTPWNV LR++V+
Sbjct: 423 GIIRMHMMGKRVNFAARSVITPDPNLNIDEIGIPEAFAMKLTYPTPVTPWNVVQLRQLVL 482
Query: 578 NGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLIT 616
NGPN++PGA M+++EDGS+ RIS++ AVQRE++AKRL+T
Sbjct: 483 NGPNIHPGAVMVEHEDGSIQRISNTNAVQREAIAKRLLT 521
Score = 135 bits (340), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 84/113 (74%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVITPDP LNID IG+P FA LTYP PVTPWNV LR++V+NGPN++PGA M++
Sbjct: 436 FAARSVITPDPNLNIDEIGIPEAFAMKLTYPTPVTPWNVVQLRQLVLNGPNIHPGAVMVE 495
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKIITRQEVVPEILKL 126
+EDGS+ RIS++ AVQRE++AKRL+T D+ ++ KII R +IL L
Sbjct: 496 HEDGSIQRISNTNAVQREAIAKRLLTTSDKANKFFKGIKIIHRHLQNGDILLL 548
>gi|345483754|ref|XP_001602617.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Nasonia
vitripennis]
Length = 1706
Score = 347 bits (891), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 195/517 (37%), Positives = 303/517 (58%), Gaps = 26/517 (5%)
Query: 114 ITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDP 173
+T + + P+ L +T ++K LSV K+ +P +FN LGH + GGL+D A+GP+++ DP
Sbjct: 11 MTVKHLDPKSLAFSVFTADDIKNLSVKKITTPDSFNVLGHPLIGGLHDPALGPLTDTSDP 70
Query: 174 CTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQ 233
C TCG N KC GH GHI+LP+PVIN LF + +Q LLKL+C C + IP ++LL +
Sbjct: 71 CRTCGCNVYKCTGHFGHIDLPMPVINPLFHKALQTLLKLACLNCFSLQIPPLAKLLLSAK 130
Query: 234 IKLLDAGYVTQAKDLEETLFNE-----ENLRLHPAQLVQLVDSHVQSILA-----HGTKI 283
+ LL GY + + E+ + ++ + + +++ +Q +L KI
Sbjct: 131 LTLLQRGYFSHIEGFEQEVMSQIADSNDGQGADIEYVRDQINAGLQKVLEVTRFKKSYKI 190
Query: 284 CDINDYKGGEELRSAFVAQVLSRH-VKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQ 342
D N K +V L ++ +KCI C I+ I+ + KI+ + +
Sbjct: 191 ADFNT-KNTNMQWHLYVDSFLKQYSAGKKCIHCHEAISKITVLKNKIM---------IQR 240
Query: 343 SLDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDI 402
L + S ++ K EQ ++M + + +KLW NE LK + P L+ TD+
Sbjct: 241 VLQNADKNESQGVVHKLEQVFLMPDQTKEYMQKLWQNEEETLKVIFPCLNNLTIKNPTDV 300
Query: 403 MFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSE 462
F + V P +RP++ +EH + ++Y+SI+ +C +L+++I A+++ + S L
Sbjct: 301 FFFEVIPVLPPIVRPVNFLDGQLIEHPQTQVYRSIIINCLTLRNIIQAIQDGDTSRLPDA 360
Query: 463 A---LKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGM 519
RG + KL N+W ELQ NVD L+D +++KTT + GLKQ+++ K G+
Sbjct: 361 GKLVYNNTRGSSAIEKLHNAWQELQANVDHLIDR--DMSKTTESANCQGLKQVIEKKQGV 418
Query: 520 IRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVING 579
IR +MMGKRVN+A RSVITPDP LNID IG+P FA LTYPVPVTPWNV LR++++NG
Sbjct: 419 IRMHMMGKRVNYAARSVITPDPNLNIDEIGIPEAFATKLTYPVPVTPWNVAELRQLILNG 478
Query: 580 PNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLIT 616
P+V+PGA MI+ +DG + R+++ VQRE++AKRL+T
Sbjct: 479 PDVHPGAVMIEGDDGFITRLTAENYVQREAIAKRLLT 515
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/104 (52%), Positives = 77/104 (74%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVITPDP LNID IG+P FA LTYPVPVTPWNV LR++++NGP+V+PGA MI+
Sbjct: 430 YAARSVITPDPNLNIDEIGIPEAFATKLTYPVPVTPWNVAELRQLILNGPDVHPGAVMIE 489
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKIITRQ 117
+DG + R+++ VQRE++AKRL+T ++ ++ KI+ R
Sbjct: 490 GDDGFITRLTAENYVQREAIAKRLLTVTEKANKFFHGVKIVHRH 533
>gi|383860778|ref|XP_003705866.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like
[Megachile rotundata]
Length = 1702
Score = 343 bits (881), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 200/533 (37%), Positives = 308/533 (57%), Gaps = 28/533 (5%)
Query: 104 QHRAIMKEKIITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLA 163
QH+ ++ T + + P+ L +T +++ LSV K+ +P++FN LGH + GGLYD A
Sbjct: 3 QHKHTRSSRV-TPKHLDPKCLMFSMFTANDIRNLSVTKIRTPLSFNILGHPLKGGLYDPA 61
Query: 164 MGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIP 223
+GP+ E DPC TCG N KC+GH GHIELP+PV+N LF + + +L+KL+C C + IP
Sbjct: 62 LGPLLESSDPCGTCGCNVFKCQGHFGHIELPMPVVNPLFHKGLCMLIKLACLKCFTLQIP 121
Query: 224 ATSQLLFINQIKLLDAGYVTQAKDLEETLF-----NEENLRLHPAQLVQLVDSHVQSILA 278
+LL +++LL GY++ + LE+ + + + + L + D ++++++
Sbjct: 122 PYVKLLLSTKLRLLQQGYLSDVEGLEQEIMFIVSNSNDPYDVDLESLQNVTDDYIENLIN 181
Query: 279 HGTKICDINDYKGGEELRSA--------FVAQVLSRHVKRK-CIFCATPINAISYQQRKI 329
Y ++L + +V VL ++ K C C PI I+ + KI
Sbjct: 182 KSRFNQSAVQY-NEDQLNTKNINMQWHMYVENVLKQYTAPKICKNCQKPIPKITTLRNKI 240
Query: 330 IKSFKIDKDNLDQSLDKSLNK-SSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLI 388
+ I N D+ K + K S I K E ++ + + +KLW NE FLK ++
Sbjct: 241 MT---IKTPNEDE---KKIEKVRSRGTIHKLETTMILPDQSKEILRKLWENEGNFLKIIL 294
Query: 389 PVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVI 448
P TD+ F + V P +RP++ +EH ++++Y+SI+ C L+++I
Sbjct: 295 PCFGMVDIEYPTDVFFFEVIPVLPPIVRPVNFVNGQMIEHPQSQVYKSIIQDCLVLRNII 354
Query: 449 MAMKNKEQSDLLSEA---LKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQ 505
+++ + L E + I+G+T KL N+W LQ NVD LMD ++NKT +
Sbjct: 355 QTIQDGNTNQLPEEGKLVFEQIKGNTAIEKLHNAWQSLQINVDHLMDR--DMNKTAESAN 412
Query: 506 IDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVT 565
GLKQ+++ K G+IR +MMGKRVNFA RSVITPDP LNID IG+P FA LTYPVPVT
Sbjct: 413 CQGLKQVIEKKEGVIRMHMMGKRVNFAARSVITPDPNLNIDEIGIPETFALKLTYPVPVT 472
Query: 566 PWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPE 618
WN LRK+++NGP+V+PGA M+++EDGSV RIS QR+++AKRL+T +
Sbjct: 473 SWNAAWLRKLILNGPDVHPGAVMVEHEDGSVQRISGDNDQQRKAIAKRLLTSD 525
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/113 (54%), Positives = 79/113 (69%), Gaps = 1/113 (0%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVITPDP LNID IG+P FA LTYPVPVT WN LRK+++NGP+V+PGA M++
Sbjct: 438 FAARSVITPDPNLNIDEIGIPETFALKLTYPVPVTSWNAAWLRKLILNGPDVHPGAVMVE 497
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKIITRQEVVPEILKL 126
+EDGSV RIS QR+++AKRL+T D+ H+ K+I R +IL L
Sbjct: 498 HEDGSVQRISGDNDQQRKAIAKRLLT-SDKAHKFFKGVKVIHRHLQNGDILLL 549
>gi|307202220|gb|EFN81707.1| DNA-directed RNA polymerase I subunit RPA1 [Harpegnathos saltator]
Length = 1687
Score = 342 bits (878), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 193/505 (38%), Positives = 292/505 (57%), Gaps = 25/505 (4%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
+T +++ LSV K+ +P++FN LGH + GGLYD +GP+ +PC TCG N C GH
Sbjct: 5 FTANDIRNLSVTKIRTPLSFNILGHPLKGGLYDPVLGPLMGNSEPCGTCGGNVHTCTGHF 64
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIEL +PV+N LF + + +L+KLSC C IP +LL + KLL G ++ +L
Sbjct: 65 GHIELSMPVVNPLFHKVLCMLIKLSCLSCFTFQIPPYVKLLLSAKWKLLYEGQLSDIDNL 124
Query: 249 EETLFNE-----ENLRLHPAQLVQLVDSHVQSILAHGTKICDI-------NDYKGGEELR 296
++ + + L + +D+++Q+I C + + K
Sbjct: 125 DQEVTSTVAEIPNVLEAQTEYIRDFIDNYIQNIYNRDRFSCGVPQNHENQMNTKNINMQW 184
Query: 297 SAFVAQVLSRHVKRK-CIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKS-SNQ 354
+V +L ++ K CI C I IS Q KI+ + L+ S D + + S+
Sbjct: 185 HMYVDNILKQYKAVKICINCHEVIPKISVMQNKIMTT------KLNNSKDSAPKEMVSST 238
Query: 355 IIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNN 414
++ K E +M + + +KLW NE FLK +IP LD TD+ F+ + V P
Sbjct: 239 VVHKLETVMIMPDQSKEYLRKLWNNEKDFLKLIIPCLDLMDIEYPTDVFFLEVIPVLPPI 298
Query: 415 LRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEA---LKGIRGDT 471
+RP+++ +EH + ++Y++I+ C L+++I +++ L E + IRG T
Sbjct: 299 VRPVNILHGQVIEHPQTQVYKNIMQDCLILRNIIQTIQDGGTDQLPQEGRLVFEQIRGLT 358
Query: 472 LNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNF 531
KL N+W LQ NVD LMD +++ KT+ + GLKQ+++ K G+IR +MMGKRVNF
Sbjct: 359 AIEKLHNAWQGLQVNVDHLMDREMS--KTSESVHCQGLKQIIEKKEGIIRMHMMGKRVNF 416
Query: 532 AGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQN 591
A RSVITPDP LNID IG+P FA LTYPVPVTPWNV LR++++NGP+V+PGA M++N
Sbjct: 417 AARSVITPDPNLNIDEIGIPEAFALKLTYPVPVTPWNVVELRRLILNGPDVHPGAVMVEN 476
Query: 592 EDGSVVRISSSQAVQRESLAKRLIT 616
EDG + ISS+ + +RE++AKRL T
Sbjct: 477 EDGMIQAISSNDSTKREAVAKRLFT 501
Score = 125 bits (313), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 57/104 (54%), Positives = 76/104 (73%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVITPDP LNID IG+P FA LTYPVPVTPWNV LR++++NGP+V+PGA M++
Sbjct: 416 FAARSVITPDPNLNIDEIGIPEAFALKLTYPVPVTPWNVVELRRLILNGPDVHPGAVMVE 475
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKIITRQ 117
NEDG + ISS+ + +RE++AKRL T + ++ K+I R
Sbjct: 476 NEDGMIQAISSNDSTKREAVAKRLFTTNSRTNKFFSGIKVIYRH 519
>gi|157134596|ref|XP_001663321.1| DNA-directed RNA polymerase I largest subunit [Aedes aegypti]
gi|108870419|gb|EAT34644.1| AAEL013134-PA [Aedes aegypti]
Length = 1686
Score = 330 bits (845), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 178/508 (35%), Positives = 298/508 (58%), Gaps = 28/508 (5%)
Query: 121 PEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNN 180
P L+ ++ +++K++SV K+ + +F+ LGH IPGGLYD AMGP S +G+ C TC +
Sbjct: 13 PTNLQFSVFSSEDIKRISVTKIVTQRSFDELGHAIPGGLYDAAMGP-SGKGEVCATCVKD 71
Query: 181 YTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAG 240
+C+GH GHIE+ VPV N F + V LL++ C C ++ I + + L Q++L+DAG
Sbjct: 72 MNQCEGHFGHIEICVPVFNPFFVKTVYNLLRICCTDCFRLQIHDSMKSLLELQLQLVDAG 131
Query: 241 YVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFV 300
Y+ +A++LE +F ++ L + + + + ++ H + + K E +R+A V
Sbjct: 132 YIVEAEELE--VFKQKVALAPVGDLPEGISYYTEMLMKHPYN--KLGNTKNSEAIRNAIV 187
Query: 301 AQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKRE 360
+ +K+ CI C +P+ + ++++ F + + + + K++N+II
Sbjct: 188 NSTMKECIKKLCIHCKSPMQKVRVSNKRLV--FSMTRAEMRADVADEKTKATNRII---- 241
Query: 361 QGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIA--TDIMFIRSLVVPPNNLRPL 418
A E + F +L+ N+ L L P+L + + D+ F+ + V P +RP+
Sbjct: 242 ----FAEECQRYFYELYKNDGALLDLLFPILKNSARTMKHPVDMFFMDVVPVQPPLVRPV 297
Query: 419 S-MEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNK----EQSDLLSEALKGI----RG 469
++ M +EH + + ++IL + +L++V++ K E + L +K + +G
Sbjct: 298 RRVDGMEILEHPQTAILRNILMANATLRAVLVMSKKDDAEGESASTLEAEMKKVYESAKG 357
Query: 470 DTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRV 529
+ KL N+W ELQ VD+ +D + ++K+ + GLKQ+++ K G++R +MMGKRV
Sbjct: 358 GSAYEKLYNAWVELQSYVDMSLDINMALDKSKA--RGFGLKQIIEKKEGLVRMHMMGKRV 415
Query: 530 NFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 589
N+A R+VITPDP + +D IG+P+ FAK LTYPVPVT WNV LRKMV+NGP+ YPGAN I
Sbjct: 416 NYAARTVITPDPNIGVDEIGIPITFAKRLTYPVPVTSWNVAELRKMVLNGPDNYPGANSI 475
Query: 590 QNEDGSVVRISSSQAVQRESLAKRLITP 617
++ +G V RIS+ QRES+AK L+TP
Sbjct: 476 EDSNGQVSRISALNVTQRESVAKTLLTP 503
Score = 122 bits (305), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 58/113 (51%), Positives = 78/113 (69%), Gaps = 3/113 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ R+VITPDP + +D IG+P+ FAK LTYPVPVT WNV LRKMV+NGP+ YPGAN I+
Sbjct: 417 YAARTVITPDPNIGVDEIGIPITFAKRLTYPVPVTSWNVAELRKMVLNGPDNYPGANSIE 476
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKIITRQEVVPEILKL 126
+ +G V RIS+ QRES+AK L+TP + + KI+ R + ++L L
Sbjct: 477 DSNGQVSRISALNVTQRESVAKTLLTPHSSNDQGV---KIVHRHLLNGDVLLL 526
>gi|91084933|ref|XP_970918.1| PREDICTED: similar to DNA-directed RNA polymerase I largest subunit
[Tribolium castaneum]
gi|270008555|gb|EFA05003.1| hypothetical protein TcasGA2_TC015082 [Tribolium castaneum]
Length = 1619
Score = 323 bits (829), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 186/503 (36%), Positives = 291/503 (57%), Gaps = 29/503 (5%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
+T +E+K+L + K+ +P+T + LGH + GGLYD ++GP++E+ +PC TC N C GH
Sbjct: 25 FTKEEIKKLCITKICTPLTLDPLGHPLSGGLYDKSLGPMTEKSEPCGTCRKNLYFCPGHF 84
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
G+IELP+PV+N +F+R + +L+++C C + IP + QI+LL+ G VT+A ++
Sbjct: 85 GYIELPLPVVNPIFYRMIGTILRMACLSCFRFQIPEHVKYSITLQIRLLNCGLVTEAVEI 144
Query: 249 EETL----FNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDY---KGGEELRSAFVA 301
++ E+L P +V + + LA + +Y K E LR+ FV
Sbjct: 145 ANSIALLILVHESLENIPEDVVLPIRKY--ETLAQEMQEKLNGEYVLTKNTETLRNQFVN 202
Query: 302 QVLSRHVKRK--CIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKR 359
++L R VK + C+ C + + + KII S K N+ + + L K ++
Sbjct: 203 EML-REVKARETCMHCKHSMEKVQVLRNKIILS---KKRNVAKGSTEVLGK-----VKAF 253
Query: 360 EQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLS 419
E YV E + +W E ++ +I VL + TD+ + + V P N+RP++
Sbjct: 254 EAKYVTPDESRTYMRNIWKEEKELMREIIAVLGGVEGEHPTDVFYWDVIPVIPPNMRPVN 313
Query: 420 MEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGI----RGDTLNNK 475
+ EH ++LY++I+++ L+ +I +KNK L KG +G + K
Sbjct: 314 IVNSRVSEHPTSQLYKNIIHNTILLRLIIQVVKNKGDLGSLPPEAKGAYNVSKGSSPIEK 373
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRS 535
L +W LQ VD L+D N + GLKQ+++ KTG+IR +MMGKRVNF+ R+
Sbjct: 374 LNLAWESLQSEVDSLIDTTYIRNA-----NVAGLKQIIEKKTGIIRMHMMGKRVNFSART 428
Query: 536 VITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGS 595
VITPDP LNID IG+P FAK LTYPVPVT WNV LRKM++NGP+V+PGA M++ EDG+
Sbjct: 429 VITPDPNLNIDEIGIPEVFAKHLTYPVPVTSWNVEELRKMIMNGPDVHPGAVMVEYEDGT 488
Query: 596 VVRISSSQAVQRESLAKRLITPE 618
+ RI+++ Q+ES+ KRL+TP+
Sbjct: 489 IKRINTNNTTQQESILKRLLTPD 511
Score = 121 bits (304), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 54/88 (61%), Positives = 71/88 (80%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP LNID IG+P FAK LTYPVPVT WNV LRKM++NGP+V+PGA M++
Sbjct: 424 FSARTVITPDPNLNIDEIGIPEVFAKHLTYPVPVTSWNVEELRKMIMNGPDVHPGAVMVE 483
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPE 101
EDG++ RI+++ Q+ES+ KRL+TP+
Sbjct: 484 YEDGTIKRINTNNTTQQESILKRLLTPD 511
>gi|195486012|ref|XP_002091328.1| GE12306 [Drosophila yakuba]
gi|194177429|gb|EDW91040.1| GE12306 [Drosophila yakuba]
Length = 1642
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 191/514 (37%), Positives = 293/514 (57%), Gaps = 34/514 (6%)
Query: 119 VVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCG 178
+ P L+ +TDQE+++LSVVKV + ITF++LGH IPGGLYD+ MG + DPC TC
Sbjct: 11 MFPSDLEFAVFTDQEIRKLSVVKVITGITFDALGHAIPGGLYDIRMGSYGKCMDPCGTC- 69
Query: 179 NNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLD 238
C GH+GHIEL PV N F + VQ LL + C C+K+ + + + Q++L+D
Sbjct: 70 LKLQDCPGHMGHIELGTPVYNPFFIKIVQRLLCIFCLHCYKLQMKDHECEIIMLQLRLID 129
Query: 239 AGYVTQAKDLEETLFNEENLRLHPAQLVQL-----VDSHVQ---SILAHGTKICDINDYK 290
AGY+ +A++LE LF E + + +LV L V H+ S+L + K N K
Sbjct: 130 AGYIIEAQELE--LFKSEIVCQNSDELVALKNGDMVHPHIAAMYSLLENNGKNSS-NSTK 186
Query: 291 GGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNK 350
LR+A L R + +KC C + + Y R+++ F + ++ + +
Sbjct: 187 TSCSLRTAITHAALQR-LGKKCRHCNKSMRFVRYMHRRLV--FYVTLADIKERVGTGAET 243
Query: 351 SSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLD------TTKELIATDIMF 404
S + + A E ++++ N LK L+PVL T + D+ F
Sbjct: 244 SGQNKV-------IFADECRRYLRQIYANYPDLLKLLVPVLGLSNTDLTQGDRSPVDLFF 296
Query: 405 IRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQ--SDLLSE 462
+ ++ V P RPL+M + + +Y +I+ + L V+ MK ++ +D
Sbjct: 297 MDTIPVTPPRARPLNMVGDMLKGNPQTDIYINIIENNHVLNVVLKYMKGGQEKLTDEAKA 356
Query: 463 ALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQ 522
A + ++GDT + KL +W LQ +VD+L+D ++ +G +GLKQ+++ K+G+IR
Sbjct: 357 AYQTLKGDTAHEKLYAAWLALQMSVDVLLDVNMSREMKSG----EGLKQIIEKKSGLIRS 412
Query: 523 NMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNV 582
+MMGKRVN+A R+VITPDP +N+D IG+P FAK L+YPVPVT WNVT LRKMV+NGP+V
Sbjct: 413 HMMGKRVNYAARTVITPDPNINVDEIGIPDIFAKKLSYPVPVTEWNVTELRKMVMNGPDV 472
Query: 583 YPGANMIQNEDGSVVRISSSQAVQRESLAKRLIT 616
+PGAN IQ+++G I + A +RESLAK L++
Sbjct: 473 HPGANYIQDKNGFTTYIPADNASKRESLAKLLLS 506
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/90 (58%), Positives = 70/90 (77%), Gaps = 1/90 (1%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ R+VITPDP +N+D IG+P FAK L+YPVPVT WNVT LRKMV+NGP+V+PGAN IQ
Sbjct: 421 YAARTVITPDPNINVDEIGIPDIFAKKLSYPVPVTEWNVTELRKMVMNGPDVHPGANYIQ 480
Query: 74 NEDGSVVRISSSQAVQRESLAKRLIT-PED 102
+++G I + A +RESLAK L++ P+D
Sbjct: 481 DKNGFTTYIPADNASKRESLAKLLLSNPKD 510
>gi|170067707|ref|XP_001868588.1| DNA-directed RNA polymerase I largest subunit [Culex
quinquefasciatus]
gi|167863791|gb|EDS27174.1| DNA-directed RNA polymerase I largest subunit [Culex
quinquefasciatus]
Length = 1692
Score = 319 bits (817), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 181/505 (35%), Positives = 294/505 (58%), Gaps = 17/505 (3%)
Query: 121 PEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNN 180
P L+ ++D+++K++SV K+ +P +F+ LG++IPGGLYD AMGP S R + C TC +
Sbjct: 13 PTNLQFAVFSDEDIKRMSVTKIVTPRSFDDLGNSIPGGLYDAAMGP-SGRSEVCATCVKD 71
Query: 181 YTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAG 240
+C+GH GHIE+ +PV N F + V LL++SC CH++ + + L Q++L+DAG
Sbjct: 72 MAQCEGHFGHIEICLPVFNPFFIKTVYNLLRISCNACHRLQMSDPLKELLQLQLQLVDAG 131
Query: 241 YVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFV 300
Y+ +A++LE +F + L + V + + ++ H + + K E +R++ V
Sbjct: 132 YIVEAEELE--MFKAKVCANPTEPLPEAVAYYSELLMNHPYN--KLANTKNSEAIRTSIV 187
Query: 301 AQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKRE 360
L V++ CI C I + ++++ F + + + +K K
Sbjct: 188 NSTLRDCVRKICISCKEAIQKVRVSNKRLV--FSMTRAEMRAFYEKQGKTEIPDEKTKAT 245
Query: 361 QGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIA--TDIMFIRSLVVPPNNLRPL 418
V+A E + F++L+ N+ L L P++ T+ + D+ F+ + V P +RP+
Sbjct: 246 VKVVLAEEAQKSFRELYANDGKLLTLLFPIMATSSATMRHPVDLFFMNVIPVQPPLVRPV 305
Query: 419 S-MEQMPPVEHSRNKLYQSILYSCGSLKSV-IMAMKNKEQSDLLSEALKGI----RGDTL 472
+E +EH + + ++IL + L+S+ +M+ K+ E + +K + +G T
Sbjct: 306 RRVEGQEILEHPQTTILRNILMANAVLRSILVMSTKDDEALGAMDVEMKKVYESAKGGTG 365
Query: 473 NNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFA 532
KL +W +LQ VD +D ++ K G + GLKQ+++ K G++R +MMGKRVN+A
Sbjct: 366 LEKLYLAWIDLQNFVDQSLDINMSQEKQKG--RGCGLKQIIEKKEGLVRMHMMGKRVNYA 423
Query: 533 GRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
R+VITPDP + +D IG+P+ FAK LTYPVPVTPWNV LRKMVINGP+ YPGANM+++
Sbjct: 424 ARTVITPDPNIGVDEIGIPITFAKRLTYPVPVTPWNVAELRKMVINGPDGYPGANMVEDS 483
Query: 593 DGSVVRISSSQAVQRESLAKRLITP 617
+G V RIS A RES+AK L+TP
Sbjct: 484 NGQVSRISGHNATHRESMAKTLLTP 508
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 79/113 (69%), Gaps = 3/113 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ R+VITPDP + +D IG+P+ FAK LTYPVPVTPWNV LRKMVINGP+ YPGANM++
Sbjct: 422 YAARTVITPDPNIGVDEIGIPITFAKRLTYPVPVTPWNVAELRKMVINGPDGYPGANMVE 481
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKIITRQEVVPEILKL 126
+ +G V RIS A RES+AK L+TP + + KI+ R + ++L L
Sbjct: 482 DSNGQVSRISGHNATHRESMAKTLLTPHSSNQQGV---KIVHRHLLSGDVLLL 531
>gi|195583416|ref|XP_002081518.1| GD25674 [Drosophila simulans]
gi|194193527|gb|EDX07103.1| GD25674 [Drosophila simulans]
Length = 1642
Score = 319 bits (817), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 186/513 (36%), Positives = 290/513 (56%), Gaps = 32/513 (6%)
Query: 119 VVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCG 178
+ P L+ +TDQE+++LSVVKV + ITF++LGH IPGGLYD+ MG DPC TC
Sbjct: 11 MFPSDLEFAVFTDQEIRKLSVVKVITGITFDALGHAIPGGLYDIRMGSYGRCMDPCGTC- 69
Query: 179 NNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLD 238
C GH+GHIEL PV N F + VQ LL + C C+K+ + + + + Q++L+D
Sbjct: 70 LKLQDCPGHMGHIELGTPVYNPFFIKFVQRLLCIFCLHCYKLQMKDHEREIIMLQLRLID 129
Query: 239 AGYVTQAKDLEETLFNEENLRLHPAQLV-----QLVDSHVQSI--LAHGTKICDINDYKG 291
AGY+ +A++LE LF E + + LV +V H+ ++ L + N K
Sbjct: 130 AGYIIEAQELE--LFKSETVCQNTDNLVAIKNGDMVHPHIAAMYSLLEKNEKNSSNSTKT 187
Query: 292 GEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKS 351
LR+A L R + +KC C + + Y R+++ F + ++ + +
Sbjct: 188 SCSLRTAITHSALQR-LGKKCRHCNKSMRFVRYMHRRLV--FYVTLADIKERVGTGAEAG 244
Query: 352 SNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLD------TTKELIATDIMFI 405
+ + A E ++++ N LK L+P+L T + D+ F+
Sbjct: 245 GQNKV-------IFADECRRYLRQIYANYPELLKLLVPILGLSNTDFTQGDRSPVDLFFM 297
Query: 406 RSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQ--SDLLSEA 463
+L V P RPL+M + + +Y +I+ + L V+ MK ++ ++ A
Sbjct: 298 DTLPVTPPRARPLNMVGDMLKGNPQTDMYLNIIENNHVLNVVLKYMKGGQEKLTEEAKAA 357
Query: 464 LKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQN 523
+ I+G+T + KL +W LQ +VD+L+D ++ +G +GLKQ+++ K+G+IR +
Sbjct: 358 YQTIKGETAHEKLYAAWLALQMSVDVLLDVNMSREMKSG----EGLKQIIEKKSGLIRSH 413
Query: 524 MMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVY 583
MMGKRVN+A R+VITPDP +N+D IG+P FAK L+YPVPVT WNVT LRKMV+NGP+V+
Sbjct: 414 MMGKRVNYAARTVITPDPNINVDEIGIPDIFAKKLSYPVPVTDWNVTELRKMVMNGPDVH 473
Query: 584 PGANMIQNEDGSVVRISSSQAVQRESLAKRLIT 616
PGAN IQ+++G I + A +RESLAK L++
Sbjct: 474 PGANYIQDKNGFTTYIPADNASKRESLAKLLLS 506
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/90 (58%), Positives = 70/90 (77%), Gaps = 1/90 (1%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ R+VITPDP +N+D IG+P FAK L+YPVPVT WNVT LRKMV+NGP+V+PGAN IQ
Sbjct: 421 YAARTVITPDPNINVDEIGIPDIFAKKLSYPVPVTDWNVTELRKMVMNGPDVHPGANYIQ 480
Query: 74 NEDGSVVRISSSQAVQRESLAKRLIT-PED 102
+++G I + A +RESLAK L++ P+D
Sbjct: 481 DKNGFTTYIPADNASKRESLAKLLLSNPKD 510
>gi|195334386|ref|XP_002033864.1| GM20204 [Drosophila sechellia]
gi|194125834|gb|EDW47877.1| GM20204 [Drosophila sechellia]
Length = 1585
Score = 318 bits (815), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 186/513 (36%), Positives = 290/513 (56%), Gaps = 32/513 (6%)
Query: 119 VVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCG 178
+ P L+ +TDQE+++LSVVKV + ITF++LGH IPGGLYD+ MG DPC TC
Sbjct: 11 MFPSDLEFAVFTDQEIRKLSVVKVITGITFDALGHAIPGGLYDIRMGSYGRCMDPCGTC- 69
Query: 179 NNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLD 238
C GH+GHIEL PV N F + VQ LL + C C+K+ + + + + Q++L+D
Sbjct: 70 LKLQDCPGHMGHIELGTPVYNPFFIKFVQRLLCIFCLHCYKLQMKDHEREIIMLQLRLID 129
Query: 239 AGYVTQAKDLEETLFNEENLRLHPAQLV-----QLVDSHVQSI--LAHGTKICDINDYKG 291
AGY+ +A++LE LF E + + LV +V H+ ++ L + N K
Sbjct: 130 AGYIIEAQELE--LFKSETVCQNTDNLVAIKNGDMVHPHIAAMYSLLEKNEKNSSNSTKT 187
Query: 292 GEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKS 351
LR+A L R + +KC C + + Y R+++ F + ++ + +
Sbjct: 188 SCSLRTAITHSALQR-LGKKCRHCNKSMRFVRYMHRRLV--FYVTLADIKERVGTGAEAG 244
Query: 352 SNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLD------TTKELIATDIMFI 405
+ + A E ++++ N LK L+PVL T + D+ F+
Sbjct: 245 GQNKV-------IFADECRRYLRQIYANYPELLKLLVPVLGLSNTEFTQGDRSPVDLFFM 297
Query: 406 RSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQ--SDLLSEA 463
+L V P RPL+M + + +Y +I+ + L V+ MK ++ ++ A
Sbjct: 298 DTLPVTPPRARPLNMVGDMLKGNPQTDIYINIIENNHVLNVVLKYMKGGQEKLTEEAKAA 357
Query: 464 LKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQN 523
+ ++G+T + KL +W LQ +VD+L+D ++ +G +GLKQ+++ K+G+IR +
Sbjct: 358 YQTLKGETAHEKLYAAWLALQMSVDVLLDVNMSREMKSG----EGLKQIIEKKSGLIRSH 413
Query: 524 MMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVY 583
MMGKRVN+A R+VITPDP +N+D IG+P FAK L+YPVPVT WNVT LRKMV+NGP+V+
Sbjct: 414 MMGKRVNYAARTVITPDPNINVDEIGIPDIFAKKLSYPVPVTEWNVTELRKMVMNGPDVH 473
Query: 584 PGANMIQNEDGSVVRISSSQAVQRESLAKRLIT 616
PGAN IQ+++G I + A +RESLAK L++
Sbjct: 474 PGANYIQDKNGFTTYIPADNASKRESLAKLLLS 506
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/90 (58%), Positives = 70/90 (77%), Gaps = 1/90 (1%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ R+VITPDP +N+D IG+P FAK L+YPVPVT WNVT LRKMV+NGP+V+PGAN IQ
Sbjct: 421 YAARTVITPDPNINVDEIGIPDIFAKKLSYPVPVTEWNVTELRKMVMNGPDVHPGANYIQ 480
Query: 74 NEDGSVVRISSSQAVQRESLAKRLIT-PED 102
+++G I + A +RESLAK L++ P+D
Sbjct: 481 DKNGFTTYIPADNASKRESLAKLLLSNPKD 510
>gi|194883048|ref|XP_001975616.1| GG22417 [Drosophila erecta]
gi|190658803|gb|EDV56016.1| GG22417 [Drosophila erecta]
Length = 1642
Score = 318 bits (814), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 188/513 (36%), Positives = 289/513 (56%), Gaps = 32/513 (6%)
Query: 119 VVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCG 178
+ P L+ +TDQE+++LSVVKV + ITF++LGH IPGGLYD+ MG DPC TC
Sbjct: 11 MFPSDLEFAVFTDQEIRKLSVVKVITGITFDALGHAIPGGLYDIRMGSYGRCMDPCGTC- 69
Query: 179 NNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLD 238
C GH+GHIEL PV N F + VQ LL + C C+K+ + + + Q++L+D
Sbjct: 70 LKLQDCPGHMGHIELGTPVYNPFFIKFVQRLLCIFCLHCYKLQMKDHECEIIMLQLRLID 129
Query: 239 AGYVTQAKDLEETLFNEENLRLHPAQLVQL-----VDSHVQSI--LAHGTKICDINDYKG 291
AGY+ +A++LE LF E + + LV L V H+ ++ L + N K
Sbjct: 130 AGYIIEAQELE--LFKSEIVCQNTDDLVALKNGDKVHPHIAAMYSLLEKNEKNSSNSTKT 187
Query: 292 GEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKS 351
LR+A L R + +KC C + + Y R+++ F + ++ + +
Sbjct: 188 SCSLRTAITHAALQR-LGKKCRHCNKSMRFVRYMHRRLV--FYVTLADIKERVGTGTETG 244
Query: 352 SNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLD------TTKELIATDIMFI 405
+ + A E ++++ N LK L+PVL T + D+ F+
Sbjct: 245 GQNKV-------IFADECRRYLRQIYANYPDLLKLLVPVLGLSNTDLTQGDRSPVDLFFM 297
Query: 406 RSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQ--SDLLSEA 463
++ V P RPL+M + + +Y +I+ + L V+ MK ++ +D A
Sbjct: 298 DTIPVTPPRARPLNMVGDMLKGNPQTDIYINIIENNHVLNVVLKYMKGGQEKLTDEAKAA 357
Query: 464 LKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQN 523
+ ++GDT + KL +W LQ +VD+L+D ++ +G +GLKQ+++ K+G+IR +
Sbjct: 358 YQTLKGDTAHEKLYAAWLALQMSVDVLLDVNMSREMKSG----EGLKQIIEKKSGLIRSH 413
Query: 524 MMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVY 583
MMGKRVN+A R+VITPDP +N+D IG+P FAK L+YPVPVT WNVT LRKMV+NGP+V+
Sbjct: 414 MMGKRVNYAARTVITPDPNINVDEIGIPDIFAKKLSYPVPVTEWNVTELRKMVMNGPDVH 473
Query: 584 PGANMIQNEDGSVVRISSSQAVQRESLAKRLIT 616
PGAN IQ+++G I + A +RESLAK L++
Sbjct: 474 PGANYIQDKNGFTTYIPADNASKRESLAKLLLS 506
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/90 (58%), Positives = 70/90 (77%), Gaps = 1/90 (1%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ R+VITPDP +N+D IG+P FAK L+YPVPVT WNVT LRKMV+NGP+V+PGAN IQ
Sbjct: 421 YAARTVITPDPNINVDEIGIPDIFAKKLSYPVPVTEWNVTELRKMVMNGPDVHPGANYIQ 480
Query: 74 NEDGSVVRISSSQAVQRESLAKRLIT-PED 102
+++G I + A +RESLAK L++ P+D
Sbjct: 481 DKNGFTTYIPADNASKRESLAKLLLSNPKD 510
>gi|194757042|ref|XP_001960774.1| GF13529 [Drosophila ananassae]
gi|190622072|gb|EDV37596.1| GF13529 [Drosophila ananassae]
Length = 1643
Score = 317 bits (813), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 192/515 (37%), Positives = 293/515 (56%), Gaps = 37/515 (7%)
Query: 119 VVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCG 178
+ P L+ +TD+E+++LSVVKV + ITF++LGH +PGGLYD+ +G + DPC TC
Sbjct: 11 MFPSDLEFAVFTDEEIRKLSVVKVITGITFDALGHPMPGGLYDIRLGSYGKCMDPCGTC- 69
Query: 179 NNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLD 238
+C GH+GHIEL PV N F + VQ LL + C C+K+ + Q + + Q++L+D
Sbjct: 70 LKMQECSGHMGHIELGTPVYNPFFIKLVQRLLCIFCLHCYKLQMKDHEQQIIMLQLRLID 129
Query: 239 AGYVTQAKDLEETLF--------NEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYK 290
AGY+ +A++LE LF +E ++L LV + + +LA K N K
Sbjct: 130 AGYIIEAQELE--LFKSEIVCQNTDELIKLKNGDLVHPRIAAMYELLAKNEKNSS-NSTK 186
Query: 291 GGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNK 350
LR+A L + +KC C + + Y R+++ F + +L + + +
Sbjct: 187 TSCSLRTAVTHAALQK-AGKKCRHCNKSMRFVRYMHRRLV--FYVTLADLKERVGTTETG 243
Query: 351 SSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVL-----DTTKELIA-TDIMF 404
N++ V A E ++++ N LK L+PVL D+T + D+ F
Sbjct: 244 GQNKV--------VFADECRRYLREIYNNYPELLKLLVPVLALSNTDSTDSGRSPVDMFF 295
Query: 405 IRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEAL 464
+ ++ V P RP++M + + +Y I+ + L VI MK Q L EAL
Sbjct: 296 MEAIPVTPPRARPMNMINDMLKGNPQTDVYIHIIENNHVLNVVIKCMKGM-QEKLSPEAL 354
Query: 465 KG---IRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIR 521
++G + KL N+W LQ +VD+L+D ++ + T +GLKQ+L+ K G+IR
Sbjct: 355 SAYNNLKGGNAHEKLYNAWLALQTSVDVLLDVNMSRDMKTA----EGLKQVLEKKEGLIR 410
Query: 522 QNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPN 581
++MMGKRVN+A R+VITPDP +N+D IG+P FAK L+YPVPVT WNVT LRKMV+NGP+
Sbjct: 411 KHMMGKRVNYAARTVITPDPNINVDEIGIPDIFAKKLSYPVPVTEWNVTELRKMVMNGPD 470
Query: 582 VYPGANMIQNEDGSVVRISSSQAVQRESLAKRLIT 616
V+PGAN IQ+++G I + A +RESLAK L++
Sbjct: 471 VHPGANYIQDKNGYTTYIPADNAAKRESLAKLLLS 505
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/90 (58%), Positives = 70/90 (77%), Gaps = 1/90 (1%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ R+VITPDP +N+D IG+P FAK L+YPVPVT WNVT LRKMV+NGP+V+PGAN IQ
Sbjct: 420 YAARTVITPDPNINVDEIGIPDIFAKKLSYPVPVTEWNVTELRKMVMNGPDVHPGANYIQ 479
Query: 74 NEDGSVVRISSSQAVQRESLAKRLIT-PED 102
+++G I + A +RESLAK L++ P+D
Sbjct: 480 DKNGYTTYIPADNAAKRESLAKLLLSNPKD 509
>gi|17647875|ref|NP_523743.1| RNA polymerase I subunit [Drosophila melanogaster]
gi|7303170|gb|AAF58234.1| RNA polymerase I subunit [Drosophila melanogaster]
Length = 1642
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 186/513 (36%), Positives = 289/513 (56%), Gaps = 32/513 (6%)
Query: 119 VVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCG 178
+ P L+ +TDQE+++LSVVKV + ITF++LGH IPGGLYD+ MG DPC TC
Sbjct: 11 MFPSDLEFAVFTDQEIRKLSVVKVITGITFDALGHAIPGGLYDIRMGSYGRCMDPCGTC- 69
Query: 179 NNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLD 238
C GH+GHIEL PV N F + VQ LL + C C+K+ + + + Q++L+D
Sbjct: 70 LKLQDCPGHMGHIELGTPVYNPFFIKFVQRLLCIFCLHCYKLQMKDHECEIIMLQLRLID 129
Query: 239 AGYVTQAKDLEETLFNEENLRLHPAQLV-----QLVDSHVQSI--LAHGTKICDINDYKG 291
AGY+ +A++LE LF E + + LV +V H+ ++ L + N K
Sbjct: 130 AGYIIEAQELE--LFKSEIVCQNTENLVAIKNGDMVHPHIAAMYKLLEKNEKNSSNSTKT 187
Query: 292 GEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKS 351
LR+A L R + +KC C + + Y R+++ F + ++ + +
Sbjct: 188 SCSLRTAITHSALQR-LGKKCRHCNKSMRFVRYMHRRLV--FYVTLADIKERVGTGAETG 244
Query: 352 SNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLD------TTKELIATDIMFI 405
+ + A E ++++ N LK L+PVL T + D+ F+
Sbjct: 245 GQNKV-------IFADECRRYLRQIYANYPELLKLLVPVLGLSNTDLTQGDRSPVDLFFM 297
Query: 406 RSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQ--SDLLSEA 463
+L V P RPL+M + + +Y +I+ + L V+ MK ++ ++ A
Sbjct: 298 DTLPVTPPRARPLNMVGDMLKGNPQTDIYINIIENNHVLNVVLKYMKGGQEKLTEEAKAA 357
Query: 464 LKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQN 523
+ ++G+T + KL +W LQ +VD+L+D ++ +G +GLKQ+++ K+G+IR +
Sbjct: 358 YQTLKGETAHEKLYTAWLALQMSVDVLLDVNMSREMKSG----EGLKQIIEKKSGLIRSH 413
Query: 524 MMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVY 583
MMGKRVN+A R+VITPDP +N+D IG+P FAK L+YPVPVT WNVT LRKMV+NGP+V+
Sbjct: 414 MMGKRVNYAARTVITPDPNINVDEIGIPDIFAKKLSYPVPVTEWNVTELRKMVMNGPDVH 473
Query: 584 PGANMIQNEDGSVVRISSSQAVQRESLAKRLIT 616
PGAN IQ+++G I + A +RESLAK L++
Sbjct: 474 PGANYIQDKNGFTTYIPADNASKRESLAKLLLS 506
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/90 (58%), Positives = 70/90 (77%), Gaps = 1/90 (1%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ R+VITPDP +N+D IG+P FAK L+YPVPVT WNVT LRKMV+NGP+V+PGAN IQ
Sbjct: 421 YAARTVITPDPNINVDEIGIPDIFAKKLSYPVPVTEWNVTELRKMVMNGPDVHPGANYIQ 480
Query: 74 NEDGSVVRISSSQAVQRESLAKRLIT-PED 102
+++G I + A +RESLAK L++ P+D
Sbjct: 481 DKNGFTTYIPADNASKRESLAKLLLSNPKD 510
>gi|56405368|sp|P91875.2|RPA1_DROME RecName: Full=DNA-directed RNA polymerase I subunit RPA1; Short=RNA
polymerase I subunit A1; AltName: Full=DNA-directed RNA
polymerase I largest subunit; AltName: Full=DNA-directed
RNA polymerase I subunit A
Length = 1642
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 186/513 (36%), Positives = 289/513 (56%), Gaps = 32/513 (6%)
Query: 119 VVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCG 178
+ P L+ +TDQE+++LSVVKV + ITF++LGH IPGGLYD+ MG DPC TC
Sbjct: 11 MFPSDLEFAVFTDQEIRKLSVVKVITGITFDALGHAIPGGLYDIRMGSYGRCMDPCGTC- 69
Query: 179 NNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLD 238
C GH+GHIEL PV N F + VQ LL + C C+K+ + + + Q++L+D
Sbjct: 70 LKLQDCPGHMGHIELGTPVYNPFFIKFVQRLLCIFCLHCYKLQMKDHECEIIMLQLRLID 129
Query: 239 AGYVTQAKDLEETLFNEENLRLHPAQLV-----QLVDSHVQSI--LAHGTKICDINDYKG 291
AGY+ +A++LE LF E + + LV +V H+ ++ L + N K
Sbjct: 130 AGYIIEAQELE--LFKSEIVCQNTENLVAIKNGDMVHPHIAAMYKLLEKNEKNSSNSTKT 187
Query: 292 GEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKS 351
LR+A L R + +KC C + + Y R+++ F + ++ + +
Sbjct: 188 SCSLRTAITHSALQR-LGKKCRHCNKSMRFVRYMHRRLV--FYVTLADIKERVGTGAETG 244
Query: 352 SNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLD------TTKELIATDIMFI 405
+ + A E ++++ N LK L+PVL T + D+ F+
Sbjct: 245 GQNKV-------IFADECRRYLRQIYANYPELLKLLVPVLGLSNTDLTQGDRSPVDLFFM 297
Query: 406 RSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQ--SDLLSEA 463
+L V P RPL+M + + +Y +I+ + L V+ MK ++ ++ A
Sbjct: 298 DTLPVTPPRARPLNMVGDMLKGNPQTDIYINIIENNHVLNVVLKYMKGGQEKLTEEAKAA 357
Query: 464 LKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQN 523
+ ++G+T + KL +W LQ +VD+L+D ++ +G +GLKQ+++ K+G+IR +
Sbjct: 358 YQTLKGETAHEKLYTAWLALQMSVDVLLDVNMSREMKSG----EGLKQIIEKKSGLIRSH 413
Query: 524 MMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVY 583
MMGKRVN+A R+VITPDP +N+D IG+P FAK L+YPVPVT WNVT LRKMV+NGP+V+
Sbjct: 414 MMGKRVNYAARTVITPDPNINVDEIGIPDIFAKKLSYPVPVTEWNVTELRKMVMNGPDVH 473
Query: 584 PGANMIQNEDGSVVRISSSQAVQRESLAKRLIT 616
PGAN IQ+++G I + A +RESLAK L++
Sbjct: 474 PGANYIQDKNGFTTYIPADNASKRESLAKLLLS 506
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/90 (58%), Positives = 70/90 (77%), Gaps = 1/90 (1%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ R+VITPDP +N+D IG+P FAK L+YPVPVT WNVT LRKMV+NGP+V+PGAN IQ
Sbjct: 421 YAARTVITPDPNINVDEIGIPDIFAKKLSYPVPVTEWNVTELRKMVMNGPDVHPGANYIQ 480
Query: 74 NEDGSVVRISSSQAVQRESLAKRLIT-PED 102
+++G I + A +RESLAK L++ P+D
Sbjct: 481 DKNGFTTYIPADNASKRESLAKLLLSNPKD 510
>gi|307179175|gb|EFN67613.1| DNA-directed RNA polymerase I subunit RPA1 [Camponotus floridanus]
Length = 1686
Score = 315 bits (807), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 194/514 (37%), Positives = 300/514 (58%), Gaps = 37/514 (7%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
L +T +++ LSV K+ + ++FN LGH + GGLYD ++G ++ + C+TCG N K
Sbjct: 19 LLFSMFTANDIRNLSVTKIRTSLSFNILGHPLKGGLYDPSLG-TTKNFELCSTCGYNSFK 77
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVT 243
C GH GHIELPVPV+N LF R++ L KLSC C IP + L ++KLL G +
Sbjct: 78 CPGHFGHIELPVPVVNPLFHRELATLFKLSCLNCFTFQIPPDIKTLLAAKLKLLYQGQLA 137
Query: 244 QAKDLEETLF----NEENLRLHPAQLVQLVDSHVQSILAHGTKICD--INDYKGGEELRS 297
+ L++ + NE++ + ++D+++Q+ + T++ I ++ +++
Sbjct: 138 DLEILDQEITYVKSNEKDKEKQTQYICDIIDTYMQNFF-NRTRLSQSMIESHEHKSNMKN 196
Query: 298 A------FVAQVLSRHVKRK---CIFCATPINAISYQQRKIIKSFK--IDKDNLDQSLDK 346
+V VL +V+ K C C + IS Q KI+ K + K+ L
Sbjct: 197 INTQWHIYVKNVLKEYVRNKVGKCRNCNNVLPKISTLQNKIMIRNKGGVSKEIL------ 250
Query: 347 SLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIR 406
S+++I K +M ++ + ++LW NE F + +IP L+ TDI F
Sbjct: 251 -----SHEVIHKLHTVMIMPNQSKEYLRQLWNNEKDFFQIIIPCLELVDIEYPTDIFFFE 305
Query: 407 SLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEA--- 463
+ V P +RP++ +EH + +Y++I+ C L+++I +++ D L +A
Sbjct: 306 VIPVLPPIVRPVNFINGQMIEHPQTYIYKNIIQDCLILRNIIQTIQDG-SIDHLPQASRL 364
Query: 464 -LKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQ 522
+ IRG+T KL N+W LQ N+D LMD +IN+T + GLKQ+L+ K G+IR
Sbjct: 365 VFEQIRGNTTVEKLHNAWQTLQSNIDHLMDR--DINRTPESINGLGLKQILEKKEGIIRM 422
Query: 523 NMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNV 582
+MMGKRVNFA RSVITPDP LNID IG+P FA+ LTYP VTPWNV LR++V+NGP+V
Sbjct: 423 HMMGKRVNFAARSVITPDPDLNIDEIGIPEAFARKLTYPTTVTPWNVVELRRLVLNGPDV 482
Query: 583 YPGANMIQNEDGSVVRISSSQAVQRESLAKRLIT 616
+PGA +I+NEDGSV I+S+ ++QRE++AKRL+T
Sbjct: 483 HPGAVIIENEDGSVQAINSNDSMQREAIAKRLLT 516
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 79/104 (75%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVITPDP LNID IG+P FA+ LTYP VTPWNV LR++V+NGP+V+PGA +I+
Sbjct: 431 FAARSVITPDPDLNIDEIGIPEAFARKLTYPTTVTPWNVVELRRLVLNGPDVHPGAVIIE 490
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKIITRQ 117
NEDGSV I+S+ ++QRE++AKRL+T D+ + + KI+ R
Sbjct: 491 NEDGSVQAINSNDSMQREAIAKRLLTTNDKTNESFTGIKIVHRH 534
>gi|328713218|ref|XP_001942957.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like
[Acyrthosiphon pisum]
Length = 1646
Score = 312 bits (800), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 187/506 (36%), Positives = 285/506 (56%), Gaps = 35/506 (6%)
Query: 121 PEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNN 180
P ++ ++ +EVK+LSV ++ S I+F LG + GGLYD +G I C+TC N
Sbjct: 14 PISMEFNTFSSEEVKKLSVARIDSLISFTPLGEPVQGGLYDSRLGSIHMSSGKCSTCNQN 73
Query: 181 YTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAG 240
C GH GHIELP PVIN +F V +LK+SC C+ + +P S +L Q+KLLD G
Sbjct: 74 SVLCSGHFGHIELPCPVINPIFTTAVIHILKISCLSCYCVLLPRESTILLAAQLKLLDNG 133
Query: 241 YVTQAKDLE---ETLFNEENLRLHPAQLVQLVDSHVQSILA--HGTKICDINDYKGGEEL 295
+T A +L L ++ +L +L + +++ L +G+ + K +E+
Sbjct: 134 QLTHAHELATEINGLCEDDERKLSVDELETFISLYLKERLQENNGSYV------KCADEI 187
Query: 296 RSAFVAQVLSRHVKRK-CIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQ 354
R F+A+ +++ +R C+ C P++ IS KSF +++++S
Sbjct: 188 RQTFIAETINQVARRTGCMHCKQPLSTIS-------KSFST----------ITISQASKS 230
Query: 355 IIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNN 414
K+ + Y+ +++ ++LW E F+ L+PVL K TD+ F+ ++V P+N
Sbjct: 231 KKEKKIKEYLFPADIREHMRQLWVKEKHFISALLPVLAGLKIEYPTDVCFMTEILVTPSN 290
Query: 415 LRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGI---RGDT 471
LRP M + VE RN Y+SIL ++ + + KE ++ SE + + +G
Sbjct: 291 LRPNLMVKGKLVESPRNSTYKSILREAKVIQYIWLLQDQKEGQEISSEITELVNDSQGKD 350
Query: 472 LNNKLQNSWHELQYNVDLLMDAKL--NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRV 529
K+Q H LQ VD L+D L + N A +I GLKQ+L+ K+G+IRQNMMGKRV
Sbjct: 351 SIEKVQIGMHNLQMCVDALLDGNLFRSYNNKDQAPRI-GLKQLLEKKSGIIRQNMMGKRV 409
Query: 530 NFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 589
++ RSVITPDPYL+ D IG+P+EFAK LTYPV VT WN L +V+NGPN YPGANMI
Sbjct: 410 DYFARSVITPDPYLDTDEIGIPVEFAKKLTYPVAVTDWNNKGLHGVVLNGPNHYPGANMI 469
Query: 590 QNEDGSVVRISSSQAVQRESLAKRLI 615
+ + G V +S++ +RE+L+K L
Sbjct: 470 ETDAGIVKWLSATNKSRREALSKTLF 495
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/82 (58%), Positives = 61/82 (74%)
Query: 17 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 76
RSVITPDPYL+ D IG+P+EFAK LTYPV VT WN L +V+NGPN YPGANMI+ +
Sbjct: 414 RSVITPDPYLDTDEIGIPVEFAKKLTYPVAVTDWNNKGLHGVVLNGPNHYPGANMIETDA 473
Query: 77 GSVVRISSSQAVQRESLAKRLI 98
G V +S++ +RE+L+K L
Sbjct: 474 GIVKWLSATNKSRREALSKTLF 495
>gi|1865779|emb|CAA70321.1| largest subunit of RNA polymerase I (A) [Drosophila melanogaster]
Length = 1644
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 184/514 (35%), Positives = 287/514 (55%), Gaps = 33/514 (6%)
Query: 119 VVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCG 178
+ P L+ +TDQE+++LSVVKV + ITF++LGH IPGGLYD+ MG DPC TC
Sbjct: 11 MFPSDLEFAVFTDQEIRKLSVVKVITGITFDALGHAIPGGLYDIRMGSYGRCMDPCGTC- 69
Query: 179 NNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLD 238
C GH+GHIEL PV N F + VQ LL + C C+K+ + + + Q++L+D
Sbjct: 70 LKLQDCPGHMGHIELGTPVYNPFFIKFVQRLLCIFCLHCYKLQMKDHECEIIMLQLRLID 129
Query: 239 AGYVTQAKDLEETLFNEENLRLHPAQLV-----QLVDSHVQSI--LAHGTKICDINDYKG 291
AGY+ +A++LE LF E + + LV +V H+ ++ L + N K
Sbjct: 130 AGYIIEAQELE--LFKSEIVCQNTENLVAIKNGDMVHPHIAAMYKLLEKNEKNSSNSTKT 187
Query: 292 GEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKS 351
LR+A L R + +KC C + + Y R+++ F + ++ + +
Sbjct: 188 SCSLRTAITHSALQR-LGKKCRHCNKSMRFVRYMHRRLV--FYVTLADIKERVGTGAETG 244
Query: 352 SNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLD------TTKELIATDIMFI 405
+ + A E ++++ N LK L+PVL T + D+ F+
Sbjct: 245 GQNKV-------IFADECRRYLRQIYANYPELLKLLVPVLGLSNTDLTQGDRSPVDLFFM 297
Query: 406 RSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQ--SDLLSEA 463
+L V P RPL+M + + +Y +I+ + L V+ MK ++ ++ A
Sbjct: 298 DTLPVTPPRARPLNMVGDMLKGNPQTDIYINIIENNHVLNVVLKYMKGGQEKLTEEAKAA 357
Query: 464 LKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQN 523
+ ++G+T + KL +W LQ +VD+L+D ++ +G +GLKQ+++ K G+IR +
Sbjct: 358 YQTLKGETAHEKLYTAWLALQMSVDVLLDVNMSREMKSG----EGLKQIIEKKCGLIRSH 413
Query: 524 MMGKRVNFAGRSVITPD-PYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNV 582
MMGKRVN+A R+VITP P +N+D IG+P FAK L+YPVPVT WNVT +RKMV+NGP+V
Sbjct: 414 MMGKRVNYAARTVITPAYPNINVDEIGIPDIFAKKLSYPVPVTEWNVTDVRKMVMNGPDV 473
Query: 583 YPGANMIQNEDGSVVRISSSQAVQRESLAKRLIT 616
+PGAN IQ+++G I + A +RESLAK L++
Sbjct: 474 HPGANYIQDKNGFTTYIPADNASKRESLAKLLLS 507
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/91 (56%), Positives = 69/91 (75%), Gaps = 2/91 (2%)
Query: 14 FPHRSVITPD-PYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 72
+ R+VITP P +N+D IG+P FAK L+YPVPVT WNVT +RKMV+NGP+V+PGAN I
Sbjct: 421 YAARTVITPAYPNINVDEIGIPDIFAKKLSYPVPVTEWNVTDVRKMVMNGPDVHPGANYI 480
Query: 73 QNEDGSVVRISSSQAVQRESLAKRLIT-PED 102
Q+++G I + A +RESLAK L++ P+D
Sbjct: 481 QDKNGFTTYIPADNASKRESLAKLLLSNPKD 511
>gi|195381961|ref|XP_002049701.1| GJ20610 [Drosophila virilis]
gi|194144498|gb|EDW60894.1| GJ20610 [Drosophila virilis]
Length = 1648
Score = 306 bits (783), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 187/515 (36%), Positives = 287/515 (55%), Gaps = 35/515 (6%)
Query: 119 VVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCG 178
+ P L+ +T +E+++LSVVKV + +TF++LGH IPGGLYD+ +G DPC TC
Sbjct: 11 MFPSDLEFAVFTPEEIRKLSVVKVITGLTFDALGHPIPGGLYDIRLGSYGRCTDPCGTC- 69
Query: 179 NNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLD 238
C GH+GHIEL V N F + VQ LL + C C+K+ + + + Q++L+D
Sbjct: 70 LKMQDCPGHMGHIELGSLVYNPFFIKLVQRLLCIFCLHCYKLQMKDHESEIVMLQLRLID 129
Query: 239 AGYVTQAKDLEETLFNEENLRLHPAQLVQL-----VDSHVQSI---LAHGTKICDINDYK 290
AGY+ +A++LE LF E + +LV+L V H+ ++ LA T N K
Sbjct: 130 AGYIIEAQELE--LFKSEIACQNTEELVKLDNGDAVHPHIAAVNELLAKNTSNAS-NVTK 186
Query: 291 GGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSL-DKSLN 349
LR+A L R +KC C + + Y R+++ + + +L + L D N
Sbjct: 187 TSCSLRTAITHAALQRASSKKCRHCNKSMRFVRYLHRRLV--YYVTIADLKERLGDVPEN 244
Query: 350 KSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIAT------DIM 403
N++I A E +K++ N LK L+PVL+ E T DI
Sbjct: 245 SGQNKVI--------FADECRRYLRKIYENYPQLLKLLVPVLNMNNEASVTGDCSPVDIF 296
Query: 404 FIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQ--SDLLS 461
F+ ++ V P RP+++ + + +Y +I+ + L V+ MK +++ S+
Sbjct: 297 FMDTIPVTPPRARPMNVINDMMKGNPQTDIYVNIIENNHVLNVVLKFMKGQQEKLSEQAK 356
Query: 462 EALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIR 521
A + +RG + KL N+W LQ +VD+L+D +N + +GLKQ+L+ K G+IR
Sbjct: 357 AAYQNMRGANSHEKLYNAWLALQSSVDVLLD----VNMSRDIKSAEGLKQVLEKKEGLIR 412
Query: 522 QNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPN 581
++MMGKRVN+A R+VITPDP +++D IG+P FA+ L+YPVPVT WNV LRKMV+NGP
Sbjct: 413 KHMMGKRVNYAARTVITPDPNIDVDEIGIPDIFARKLSYPVPVTEWNVIELRKMVMNGPE 472
Query: 582 VYPGANMIQNEDGSVVRISSSQAVQRESLAKRLIT 616
V+PGAN IQ+ G I + A +R S+AK L++
Sbjct: 473 VHPGANYIQDSKGLTTFIPADNAAKRASMAKLLLS 507
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/90 (53%), Positives = 65/90 (72%), Gaps = 1/90 (1%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ R+VITPDP +++D IG+P FA+ L+YPVPVT WNV LRKMV+NGP V+PGAN IQ
Sbjct: 422 YAARTVITPDPNIDVDEIGIPDIFARKLSYPVPVTEWNVIELRKMVMNGPEVHPGANYIQ 481
Query: 74 NEDGSVVRISSSQAVQRESLAKRLIT-PED 102
+ G I + A +R S+AK L++ P+D
Sbjct: 482 DSKGLTTFIPADNAAKRASMAKLLLSNPKD 511
>gi|195123291|ref|XP_002006141.1| GI20875 [Drosophila mojavensis]
gi|193911209|gb|EDW10076.1| GI20875 [Drosophila mojavensis]
Length = 1649
Score = 305 bits (781), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 182/515 (35%), Positives = 288/515 (55%), Gaps = 34/515 (6%)
Query: 119 VVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCG 178
+ P L+ +T +E+++LSVVK+ + +TF++LGH IPGGLYD+ +G DPC TC
Sbjct: 11 MFPSDLEFAVFTPEEIRKLSVVKIITGLTFDALGHPIPGGLYDIRLGSYGRCMDPCGTC- 69
Query: 179 NNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLD 238
C GH+GHIEL V N F + VQ LL + C CHK+ + + + Q++L+D
Sbjct: 70 LKMQDCPGHMGHIELGSLVYNPFFIKLVQRLLCIFCLHCHKLQMRDHESEIIMLQLRLID 129
Query: 239 AGYVTQAKDLEETLFNEENLRLHPAQLVQLVD--------SHVQSILAHGTKICDINDYK 290
AGY+ +A++LE LF E + + ++V+L + + VQ +LA N K
Sbjct: 130 AGYIIEAQELE--LFKSEVVCQNTDEMVKLDNGDAVHPRIAAVQEMLAKNVSNAS-NATK 186
Query: 291 GGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNK 350
LR+A L R +KC C + + Y R+++ I D ++ D +
Sbjct: 187 TSCSLRTAITHAALQRGSSKKCRHCNKSMRFVRYLHRRLVYYVTI-ADMKERIGDVPESS 245
Query: 351 SSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDT-------TKELIATDIM 403
N++I A E +K++ N FLK L+PVL+ +++ DI
Sbjct: 246 GQNKVI--------FADECRRYLRKIYENYPEFLKLLVPVLNLNSSESSPSEDYSPVDIF 297
Query: 404 FIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQ--SDLLS 461
F+ ++ V P RP+++ + + +Y +I+ + L ++ MK ++ +D
Sbjct: 298 FMDTIPVTPPRARPMNVINDMMKGNPQTDIYVNIIENNHVLNVILKFMKGQQDKLNDAAR 357
Query: 462 EALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIR 521
A + +RG + + KL N+W LQ +VD+L+D +N + +GLKQ+L+ K G+IR
Sbjct: 358 AAYQNMRGVSGHEKLYNAWLSLQSSVDVLLD----VNLSRDIKSAEGLKQVLEKKEGLIR 413
Query: 522 QNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPN 581
++MMGKRVN+A R+VITPDP +++D IG+P FA+ L+YPVPVT WNV LRKMV+NGP+
Sbjct: 414 KHMMGKRVNYAARTVITPDPNIDVDEIGIPDIFARKLSYPVPVTEWNVIELRKMVMNGPD 473
Query: 582 VYPGANMIQNEDGSVVRISSSQAVQRESLAKRLIT 616
V+PGAN IQ+ G I + A +R S+AK L++
Sbjct: 474 VHPGANYIQDSKGLTTYIPADNAAKRASMAKLLLS 508
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/90 (53%), Positives = 66/90 (73%), Gaps = 1/90 (1%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ R+VITPDP +++D IG+P FA+ L+YPVPVT WNV LRKMV+NGP+V+PGAN IQ
Sbjct: 423 YAARTVITPDPNIDVDEIGIPDIFARKLSYPVPVTEWNVIELRKMVMNGPDVHPGANYIQ 482
Query: 74 NEDGSVVRISSSQAVQRESLAKRLIT-PED 102
+ G I + A +R S+AK L++ P+D
Sbjct: 483 DSKGLTTYIPADNAAKRASMAKLLLSNPKD 512
>gi|195025047|ref|XP_001985990.1| GH20790 [Drosophila grimshawi]
gi|193901990|gb|EDW00857.1| GH20790 [Drosophila grimshawi]
Length = 724
Score = 295 bits (754), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 178/517 (34%), Positives = 283/517 (54%), Gaps = 36/517 (6%)
Query: 119 VVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCG 178
+ P L+ ++ +E+++LSVVK+ + +TF++LGH IPGGLYD+ +G DPC TC
Sbjct: 11 MFPSDLEFAVFSPEEIRKLSVVKIITGLTFDALGHPIPGGLYDIRLGSYGRCMDPCGTCL 70
Query: 179 NNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLD 238
C GH+G IEL V N F + VQ LL + C C K+ + + + Q++L+D
Sbjct: 71 R-MQDCPGHMGRIELGSLVYNPFFIKMVQRLLCIFCLHCFKLQMKDHESEIIMLQLRLID 129
Query: 239 AGYVTQAKDLEETLFNEENLRLHPAQLVQLVD--------SHVQSILAHGTKICDINDYK 290
AGY+ +A++LE LF E + +LV+L + + + +LA N K
Sbjct: 130 AGYIIEAQELE--LFKSEIACQNTEELVKLDNGDSVHPRIAAISELLAKNENNA-TNMTK 186
Query: 291 GGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNK 350
LR+A L R +KC C + + Y R+++ I D ++ D N
Sbjct: 187 TSCSLRTAITHAALQRASSKKCRHCNKSMRFVRYLHRRLVYYVTI-ADMKERLGDVPDNT 245
Query: 351 SSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVL---------DTTKELIATD 401
N++I A E + +K++ + LK L+PVL ++ + D
Sbjct: 246 GQNKVI--------FADEAQRYLRKIYEHYPQLLKLLVPVLSLNSDASGSNSNSDYSPVD 297
Query: 402 IMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQ--SDL 459
I F+ ++ V P RP+++ + + +Y +I+ + L V+ MK +++ S+
Sbjct: 298 IFFMDTIPVTPPRARPMNVINDMMKGNPQTDIYVNIIENNNVLNVVLKFMKGQQENLSEQ 357
Query: 460 LSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGM 519
A + +RG + KL N+W LQ +VD+L+D +N + +GLKQ+L+ K G+
Sbjct: 358 ARAAYQNMRGSNSHEKLYNAWLSLQSSVDVLLD----VNMSRDIKSAEGLKQVLEKKDGL 413
Query: 520 IRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVING 579
IR++MMGKRVN+A R+VITPDP +++D IG+P FA+ L+YPVPVT WNV LRKMV+NG
Sbjct: 414 IRKHMMGKRVNYAARTVITPDPNIDVDEIGIPDIFARKLSYPVPVTEWNVVELRKMVMNG 473
Query: 580 PNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLIT 616
P+V+PGAN IQ+ GS I + +R S+AK L++
Sbjct: 474 PDVHPGANYIQDSKGSTTFIPADNVAKRASMAKLLLS 510
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 72/105 (68%), Gaps = 4/105 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ R+VITPDP +++D IG+P FA+ L+YPVPVT WNV LRKMV+NGP+V+PGAN IQ
Sbjct: 425 YAARTVITPDPNIDVDEIGIPDIFARKLSYPVPVTEWNVVELRKMVMNGPDVHPGANYIQ 484
Query: 74 NEDGSVVRISSSQAVQRESLAKRLIT-PEDQ---QHRAIMKEKII 114
+ GS I + +R S+AK L++ P+D HR ++ ++
Sbjct: 485 DSKGSTTFIPADNVAKRASMAKLLLSNPKDGVKIVHRHVLNGDVL 529
>gi|432880189|ref|XP_004073596.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Oryzias
latipes]
Length = 1705
Score = 294 bits (753), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 175/520 (33%), Positives = 280/520 (53%), Gaps = 45/520 (8%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+++LSV + +P +++G+ P LYDLA+GP ++ + C+TC ++ C GH
Sbjct: 20 YSAEEIRKLSVKTITNPKFLDAVGNVAPNSLYDLALGP-ADLKEVCSTCCQDFNNCPGHF 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELP+PV N LFF + LL++ SC CH + P + L +NQ+KL+D G + + +
Sbjct: 79 GHIELPLPVYNPLFFDKLYLLIRGSCLSCHMLTCPRAAIHLLLNQLKLVDHGAIREVYQI 138
Query: 249 EETLFN--EENLRLHPAQLVQLVDSHVQSILAHGTKICD-INDYKGGEELRSAFVAQVLS 305
E L EEN + ++ +L+ + + I + K E ++ +
Sbjct: 139 EHVLNQHLEENPKATGDEIEELLRHYTNETIETSVNISENFKPTKHVVEKKACLINDFWK 198
Query: 306 RHVK-RKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYV 364
H+K RKC +C + R +++ K + N+++N+ + + Y+
Sbjct: 199 IHMKTRKCPYCRS--------GRTLVRREHNSKLIITAPSGAQTNENTNENVMAGRRVYL 250
Query: 365 MASEVEADFKKLWTNEHLFLKCLIPVLDTT------KELIATDIMFIRSLVVPPNNLRPL 418
AS + K+W E FL CL P L+ T + D+ F LVVPP RP+
Sbjct: 251 TASTAKDHIIKIWEKEGFFLSCLFPGLEETASPADGQGGFYPDLFFTELLVVPPCRFRPI 310
Query: 419 SM--EQMPPVEHSRNKLYQSILYSCGSLKSVIMAM---KNKEQSDLLSEA---------- 463
+ +QM + N Q+++ C ++ ++ M KN E + SE
Sbjct: 311 NRLGDQMFTNGQTVN--MQAVMKDCEIIRKLLALMAGEKNAEGEETFSEIPLHQIFQAPD 368
Query: 464 ------LKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKT 517
L GI G TL +KL N W LQ +V+++ D+ ++ T + G++Q+L+ K
Sbjct: 369 QMDPTFLSGITGLTLTDKLYNMWIRLQSHVNIVFDSDMDKLMT---EKYPGVRQILEKKE 425
Query: 518 GMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVI 577
G+ R++MMGKRV++A RSVI PD Y+ + IG+P+ FA LTYP PVTPWNV LR+ V+
Sbjct: 426 GLFRKHMMGKRVDYAARSVICPDMYIETNEIGIPMVFATKLTYPQPVTPWNVKELRQAVL 485
Query: 578 NGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
NGPNV+PGA+M+ NEDG +S + QRE++AK+L+TP
Sbjct: 486 NGPNVHPGASMVINEDGRKTILSPTNFTQREAVAKQLLTP 525
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 71/104 (68%), Gaps = 2/104 (1%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+ + IG+P+ FA LTYP PVTPWNV LR+ V+NGPNV+PGA+M+
Sbjct: 439 YAARSVICPDMYIETNEIGIPMVFATKLTYPQPVTPWNVKELRQAVLNGPNVHPGASMVI 498
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKIITRQ 117
NEDG +S + QRE++AK+L+TP H+ M KI+ R
Sbjct: 499 NEDGRKTILSPTNFTQREAVAKQLLTPSLGPHK--MSMKIVNRH 540
>gi|260798706|ref|XP_002594341.1| hypothetical protein BRAFLDRAFT_201044 [Branchiostoma floridae]
gi|229279574|gb|EEN50352.1| hypothetical protein BRAFLDRAFT_201044 [Branchiostoma floridae]
Length = 1731
Score = 292 bits (747), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 184/530 (34%), Positives = 276/530 (52%), Gaps = 45/530 (8%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
++ Y+ +E+ +LSV +V +P TF++L H GGLYD A+GP ++R D C TC NY
Sbjct: 14 VQFSTYSAEEICRLSVKEVTNPQTFDNLLHPTTGGLYDPALGP-TDRDDLCGTCAQNYLH 72
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVT 243
C GH+GH+ LP+PV N LF R + +L+ SCF CH++ P L +Q+K LD G V
Sbjct: 73 CPGHMGHVNLPLPVFNPLFLRLLYQMLRGSCFYCHRLMCPKIQAQLITSQLKALDHGMVQ 132
Query: 244 QAKDLEETLFN--EENLRLHPAQLVQLVDSHVQ-SILAHGTKICDIN-DYKGGEELRSAF 299
+ L E L EE + Q ++ +Q +I TK+ + K R
Sbjct: 133 MVEKLHEVLSGILEEEGDADDDYISQQLEEELQKAISGVDTKVTQTQQNIKTAVGKRKDL 192
Query: 300 VAQVLSRHVKR---KCIFCATPINAISYQQ--RKIIKSF-------KIDKDNLDQSLDKS 347
V + + K+ KC+ C +P+ + Q R + K K D D L LD
Sbjct: 193 VKEFTKDYFKKRGSKCVHCKSPVRNLKMQHNSRILFKGIPKRHHKRKNDDDWLADKLDVK 252
Query: 348 LNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKE-LIATDIMFIR 406
N ++ + E GY+ E A + LW E L L L + DI F+
Sbjct: 253 -NVITDPTV---ESGYLTPYEARAHLRALWKKEGELLSNLFGALRLVPQGTCPIDIFFLE 308
Query: 407 SLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEA--- 463
L VPP+ RP+S+ E+++ +L C ++ ++ M +E +
Sbjct: 309 VLPVPPSRFRPVSVLGDKRFENAQTSNLAKVLAECVVVRKLLQEMGKEEAESTKTGKVNT 368
Query: 464 -------------LKGIRGDTLNNKLQNSWHELQYNVDLLMDA---KLNINKTTGAHQID 507
L I G T+ K+ N+W LQ +V+ ++D+ KL+ +K+ G Q+
Sbjct: 369 ILLIVFGFYTQTILDEISGTTVTEKVNNTWLRLQASVNRVVDSDLDKLSNDKSPGIKQV- 427
Query: 508 GLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPW 567
+++ K G+ R++MMGKRV++A RSVI+PDPY+N+D IG+PL FA LTYP PVT W
Sbjct: 428 ---LLIEKKDGLFRKHMMGKRVDYAARSVISPDPYINMDEIGIPLVFATKLTYPQPVTTW 484
Query: 568 NVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
NV LR+ VINGPNV+PGA + NE+G +S S QRE++AK+L+TP
Sbjct: 485 NVRELRQAVINGPNVHPGAAFVVNENGHKTVLSVSDPTQREAIAKQLLTP 534
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/104 (53%), Positives = 71/104 (68%), Gaps = 1/104 (0%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDPY+N+D IG+PL FA LTYP PVT WNV LR+ VINGPNV+PGA +
Sbjct: 448 YAARSVISPDPYINMDEIGIPLVFATKLTYPQPVTTWNVRELRQAVINGPNVHPGAAFVV 507
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKIITRQ 117
NE+G +S S QRE++AK+L+TP A M KI+ R
Sbjct: 508 NENGHKTVLSVSDPTQREAIAKQLLTPSSYPG-AAMGTKIVHRH 550
>gi|125808018|ref|XP_001360603.1| GA10089 [Drosophila pseudoobscura pseudoobscura]
gi|54635775|gb|EAL25178.1| GA10089 [Drosophila pseudoobscura pseudoobscura]
Length = 1647
Score = 291 bits (746), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 178/518 (34%), Positives = 287/518 (55%), Gaps = 42/518 (8%)
Query: 119 VVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCG 178
+ P L+ +TDQE+++LSVVKV + I F++LGH +PGGLYD+ MG DPC TC
Sbjct: 11 MFPSDLEFAVFTDQEIRKLSVVKVITGIAFDALGHPMPGGLYDIRMGSYGRCIDPCGTC- 69
Query: 179 NNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLD 238
C GH+GHIEL V N F + VQ LL + C C K+ + + + Q++L+D
Sbjct: 70 LKMQDCPGHMGHIELGTLVYNPFFIKLVQRLLCIFCLHCFKLQMKDHECEIIMLQLRLID 129
Query: 239 AGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHV---------QSILAHGTKICDINDY 289
AGY+ +A++LE +F E + + +L++L + + +L GT+ +
Sbjct: 130 AGYIIEAQELE--IFKSEIVCQNSEELIKLDNGDAVHPRIAAMHELLLKSGTE--PTHST 185
Query: 290 KGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSL-DKSL 348
K LR+A L R K KC C + + Y R+++ F + ++ + L D +
Sbjct: 186 KSTCSLRTAVTHSALQRPGK-KCRHCNKSMRYVRYMHRRLV--FYVTIADIKERLGDGAE 242
Query: 349 NKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIA------TDI 402
N++I A E ++++ N L+ L+PVL + A D+
Sbjct: 243 TGGQNKVI--------FADECRRYLRQIYANYPELLRLLMPVLSLSNTDAADSGYSPVDM 294
Query: 403 MFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSE 462
F+ ++ V RP+++ + + +Y +I+ + L V+ M+ ++ L+E
Sbjct: 295 FFMDTIPVTAPRARPMNVVNGMVKGNPQTDIYVNIIENNNVLNVVLRHMRGNQEK--LTE 352
Query: 463 ----ALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTG 518
A + ++G + KL N+W LQ +VD+L+D +N + +GLKQ+L+ K G
Sbjct: 353 HALAAYQDMKGSNAHEKLYNAWLSLQTSVDVLLD----VNMSREVQSAEGLKQVLEKKDG 408
Query: 519 MIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVIN 578
+IR++MMGKRVN+A R+VITPDP +++D IG+P FA+ L+YP+PVT WNVT LRKMV+N
Sbjct: 409 LIRKHMMGKRVNYAARTVITPDPNIDVDEIGIPDIFARKLSYPIPVTEWNVTDLRKMVMN 468
Query: 579 GPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLIT 616
GP+V+PGAN IQ+ +G I + A +R S+AK L++
Sbjct: 469 GPDVHPGANYIQDSNGFTTYIPADNAAKRASMAKLLLS 506
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/90 (53%), Positives = 68/90 (75%), Gaps = 1/90 (1%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ R+VITPDP +++D IG+P FA+ L+YP+PVT WNVT LRKMV+NGP+V+PGAN IQ
Sbjct: 421 YAARTVITPDPNIDVDEIGIPDIFARKLSYPIPVTEWNVTDLRKMVMNGPDVHPGANYIQ 480
Query: 74 NEDGSVVRISSSQAVQRESLAKRLIT-PED 102
+ +G I + A +R S+AK L++ P+D
Sbjct: 481 DSNGFTTYIPADNAAKRASMAKLLLSNPKD 510
>gi|195150452|ref|XP_002016168.1| GL11448 [Drosophila persimilis]
gi|194110015|gb|EDW32058.1| GL11448 [Drosophila persimilis]
Length = 1647
Score = 291 bits (746), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 178/518 (34%), Positives = 287/518 (55%), Gaps = 42/518 (8%)
Query: 119 VVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCG 178
+ P L+ +TDQE+++LSVVKV + I F++LGH +PGGLYD+ MG DPC TC
Sbjct: 11 MFPSDLEFAVFTDQEIRKLSVVKVITGIAFDALGHPMPGGLYDIRMGSYGRCIDPCGTC- 69
Query: 179 NNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLD 238
C GH+GHIEL V N F + VQ LL + C C K+ + + + Q++L+D
Sbjct: 70 LKMQDCPGHMGHIELGTLVYNPFFIKLVQRLLCIFCLHCFKLQMKDHECEIIMLQLRLID 129
Query: 239 AGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHV---------QSILAHGTKICDINDY 289
AGY+ +A++LE +F E + + +L++L + + +L GT+ +
Sbjct: 130 AGYIIEAQELE--IFKSEIVCQNSEELIKLDNGDAVHPRIAAMHELLLKSGTE--PTHST 185
Query: 290 KGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSL-DKSL 348
K LR+A L R K KC C + + Y R+++ F + ++ + L D +
Sbjct: 186 KSTCSLRTAVTHSALQRPGK-KCRHCNKSMRYVRYMHRRLV--FYVTIADIKERLGDGAE 242
Query: 349 NKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIA------TDI 402
N++I A E ++++ N L+ L+PVL + A D+
Sbjct: 243 TGGQNKVI--------FADECRRYLRQIYANYPELLRLLMPVLSLSNTDAADSGYSPVDM 294
Query: 403 MFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSE 462
F+ ++ V RP+++ + + +Y +I+ + L V+ M+ ++ L+E
Sbjct: 295 FFMDTIPVTAPRARPMNVVNGMVKGNPQTDIYVNIIENNNVLNVVLRHMRGNQEK--LTE 352
Query: 463 ----ALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTG 518
A + ++G + KL N+W LQ +VD+L+D +N + +GLKQ+L+ K G
Sbjct: 353 HALAAYQDMKGSNAHEKLYNAWLSLQTSVDVLLD----VNMSREVQSAEGLKQVLEKKDG 408
Query: 519 MIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVIN 578
+IR++MMGKRVN+A R+VITPDP +++D IG+P FA+ L+YP+PVT WNVT LRKMV+N
Sbjct: 409 LIRKHMMGKRVNYAARTVITPDPNIDVDEIGIPDIFARKLSYPIPVTEWNVTDLRKMVMN 468
Query: 579 GPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLIT 616
GP+V+PGAN IQ+ +G I + A +R S+AK L++
Sbjct: 469 GPDVHPGANYIQDSNGFTTYIPADNAAKRASMAKLLLS 506
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/90 (53%), Positives = 68/90 (75%), Gaps = 1/90 (1%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ R+VITPDP +++D IG+P FA+ L+YP+PVT WNVT LRKMV+NGP+V+PGAN IQ
Sbjct: 421 YAARTVITPDPNIDVDEIGIPDIFARKLSYPIPVTEWNVTDLRKMVMNGPDVHPGANYIQ 480
Query: 74 NEDGSVVRISSSQAVQRESLAKRLIT-PED 102
+ +G I + A +R S+AK L++ P+D
Sbjct: 481 DSNGFTTYIPADNAAKRASMAKLLLSNPKD 510
>gi|195431457|ref|XP_002063757.1| GK15841 [Drosophila willistoni]
gi|194159842|gb|EDW74743.1| GK15841 [Drosophila willistoni]
Length = 1649
Score = 291 bits (745), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 181/515 (35%), Positives = 285/515 (55%), Gaps = 37/515 (7%)
Query: 119 VVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCG 178
+ P L+ +TD+E+++LSVVKV + +TF++LGH I GGLYD+ +G DPC TC
Sbjct: 11 MFPSDLEFAVFTDEEIRKLSVVKVVTGLTFDALGHPIVGGLYDIRLGSYGRCMDPCGTC- 69
Query: 179 NNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLD 238
C GH+GHIEL V N F + VQ LL + C C K+ + + + Q++L+D
Sbjct: 70 LLMQDCPGHMGHIELGSLVYNPFFIKLVQRLLCIFCLHCFKMQMKDHECEIIMLQLRLID 129
Query: 239 AGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSH-VQSILAHGTKICDINDY------KG 291
AGY+ +A++LE LF E + + +LV+L + V +A ++ + N K
Sbjct: 130 AGYIIEAQELE--LFKSEIVCQNTEELVKLDNGDAVHPRIAAMYELLEKNQSNASNVTKT 187
Query: 292 GEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKID--KDNLDQSLDKSLN 349
LR+A L R +KC C+ + + Y R+++ + K+ L + D +
Sbjct: 188 SCSLRTAITHAALQR-AGKKCRHCSKSMRFVRYMHRRLVYYVTLADIKERLGDAGDAT-- 244
Query: 350 KSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIA-----TDIMF 404
N++I A E ++++ N LK L+PVL D+ F
Sbjct: 245 -GQNKVI--------FADECRRYLRQIYNNYPQLLKLLVPVLALGNSSAGDGYSPVDMFF 295
Query: 405 IRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEAL 464
+ ++ V P RP+++ + + +Y +I+ + L +V++ N Q L EA+
Sbjct: 296 METIPVTPPRARPMNVINDMLKGNPQTDIYVNIILNNHVL-NVVLKFMNGNQEKLSEEAM 354
Query: 465 ---KGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIR 521
+ ++G + KL N+W LQ +VD+L+D +N + +GLKQ+L+ K G+IR
Sbjct: 355 AAYQNLKGSNSHEKLYNAWLSLQTSVDVLLD----VNMSREVKSAEGLKQVLEKKDGLIR 410
Query: 522 QNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPN 581
++MMGKRVN+A R+VITPDP +N+D IG+P FA+ L+YPVPVT WNVT LRKMV+NGP+
Sbjct: 411 KHMMGKRVNYAARTVITPDPNINVDEIGIPDIFARKLSYPVPVTEWNVTELRKMVMNGPD 470
Query: 582 VYPGANMIQNEDGSVVRISSSQAVQRESLAKRLIT 616
V+PGAN IQ +G I + A +R S+AK L++
Sbjct: 471 VHPGANYIQESNGFTTYIPADNAAKRASMAKLLLS 505
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 64/86 (74%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ R+VITPDP +N+D IG+P FA+ L+YPVPVT WNVT LRKMV+NGP+V+PGAN IQ
Sbjct: 420 YAARTVITPDPNINVDEIGIPDIFARKLSYPVPVTEWNVTELRKMVMNGPDVHPGANYIQ 479
Query: 74 NEDGSVVRISSSQAVQRESLAKRLIT 99
+G I + A +R S+AK L++
Sbjct: 480 ESNGFTTYIPADNAAKRASMAKLLLS 505
>gi|390354095|ref|XP_794863.3| PREDICTED: DNA-directed RNA polymerase I subunit RPA1
[Strongylocentrotus purpuratus]
Length = 1738
Score = 285 bits (730), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 183/527 (34%), Positives = 274/527 (51%), Gaps = 55/527 (10%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
++ Y+ Q++KQLSV ++ +P +F+ LGH GGLYD A+GP S+R + C TC
Sbjct: 14 VRFSTYSSQDLKQLSVKELTNPRSFDDLGHPTLGGLYDPALGP-SDRDELCGTCSLGQFH 72
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVT 243
C GH+GH+ LP+PV N LFF V+ LL SC C+ + P + L + Q++ LD G +
Sbjct: 73 CPGHMGHVTLPLPVFNPLFFPLVRQLLHGSCLECNHLLAPRWTLRLVVQQLRCLDHGLLG 132
Query: 244 QAKDLEE---TLFNEENLRLHPA-QLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAF 299
DL E T+ +E + A Q+ + +V IL+ K ++ + EE R
Sbjct: 133 SVGDLAELASTVISESDDGEGLADQMETTLKEYVDEILSKHVKE-QPSEARHIEECRRHV 191
Query: 300 VAQVLSRHVK---RKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQII 356
+ + +HV RKC C P+ I +I L K ++ S +
Sbjct: 192 IQSFIRQHVASRGRKCPLCKKPVREIRPHHNSVI-------------LTKVISASGQGL- 237
Query: 357 RKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLD---TTKELIATDIMFIRSLVVPPN 413
+ Y+ E + L N+ + L+ + VLD E D F+ +L V P+
Sbjct: 238 ---QMVYLSPHEARKHLRNLMANDGVGLRHIFGVLDLPSKRGEDSTIDQFFLEALPVIPS 294
Query: 414 NLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKN-------------------- 453
RP+S E+ + +L C L ++ M+
Sbjct: 295 KFRPISTAGEKTFENPQTGNLSKVLKDCHVLHLLLRVMRQSTSQQGSQDVENGVMEIDVK 354
Query: 454 ---KEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLK 510
K++ ++ L I G TL KLQN+ +LQ +V+ ++D+ L+ T A G+K
Sbjct: 355 LTVKDKENVDQSILSTIPGKTLPEKLQNALTQLQTHVNCVIDSDLDKISTDKA---PGIK 411
Query: 511 QMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVT 570
Q+L+ K G+ R++MMGKRVN+A RSVI+PDPY+N D IG+P AK LTYP PVT WN
Sbjct: 412 QLLERKEGLFRKHMMGKRVNYAARSVISPDPYINTDEIGIPQVIAKRLTYPQPVTDWNAQ 471
Query: 571 LLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
LR+MV+NGP+V+PGA +I+NEDGS VR+ + QRES+AKRL+TP
Sbjct: 472 ELRQMVMNGPDVHPGALLIENEDGSQVRLRADNQSQRESVAKRLLTP 518
Score = 118 bits (296), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 53/89 (59%), Positives = 68/89 (76%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDPY+N D IG+P AK LTYP PVT WN LR+MV+NGP+V+PGA +I+
Sbjct: 432 YAARSVISPDPYINTDEIGIPQVIAKRLTYPQPVTDWNAQELRQMVMNGPDVHPGALLIE 491
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPED 102
NEDGS VR+ + QRES+AKRL+TP +
Sbjct: 492 NEDGSQVRLRADNQSQRESVAKRLLTPSN 520
>gi|242012717|ref|XP_002427074.1| DNA-directed RNA polymerase I largest subunit, putative [Pediculus
humanus corporis]
gi|212511332|gb|EEB14336.1| DNA-directed RNA polymerase I largest subunit, putative [Pediculus
humanus corporis]
Length = 1659
Score = 285 bits (730), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 176/493 (35%), Positives = 264/493 (53%), Gaps = 44/493 (8%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
+ ++ LSVV++ + I FN+L H + GLYDL MGP + C TC C GH
Sbjct: 16 FNASDIYNLSVVEIKTSICFNALDHPLKDGLYDLVMGPSGMLKESCLTCRQTIRNCCGHF 75
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHI LP+PVIN LF ++V LLKLSC C+K+ IP + LFI Q+KLLD G + +A+DL
Sbjct: 76 GHINLPLPVINPLFHKEVLTLLKLSCSYCYKLAIPPNLRNLFIYQMKLLDHGKMAEAEDL 135
Query: 249 EETLFNEENLRLHPAQLVQLVDSHVQSI--LAHGTKICDINDYKGGEELRSAFVAQVLSR 306
E N + + + AQ + +++ + + L + +I + E LR F+ + + +
Sbjct: 136 ETKALNLKEMDSNDAQNYVVKENYSEYLKELELDSNPVNIPSSRSIESLRLKFLNEFIKQ 195
Query: 307 HV-KRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSL----DKSLNKSSNQIIRKREQ 361
+ + C C P I Q KII S I K + + + NK S K+E
Sbjct: 196 IILPKSCTHCKNPFKRIIKFQNKIISS--ITKVEIAKKFKDVPQNAFNKGS-----KQET 248
Query: 362 GYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSME 421
++ E +K+W ++ L+P+L + TD+ F+ ++V P RP+
Sbjct: 249 TFITPKESRETLRKIWEESKDLVEELMPILKNSNLSYPTDLFFMDVILVTPPKARPVEFA 308
Query: 422 QMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWH 481
+ V+ G S K + GIRG T+ KL W
Sbjct: 309 NVKAVD-------------TGDYNSFPPEYK---------VYIDGIRGATVLEKLHECWL 346
Query: 482 ELQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
+LQ ++D L+D A++++ K I GLKQ+L+ K G++R +MMGKRVNFA R+VIT
Sbjct: 347 QLQNDIDTLLDSSAARISLKKG-----ISGLKQVLEKKEGVLRMHMMGKRVNFAARTVIT 401
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVR 598
PDP LNI IGVP FAK LTYPV V +NV LRKMV NGP+VYPGA +I+NE+GS+++
Sbjct: 402 PDPNLNIQEIGVPEYFAKKLTYPVGVNFFNVEELRKMVQNGPDVYPGATLIENENGSLIK 461
Query: 599 ISSSQAVQRESLA 611
++ + +++ +
Sbjct: 462 LTGGEENRKKRIG 474
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/81 (54%), Positives = 60/81 (74%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP LNI IGVP FAK LTYPV V +NV LRKMV NGP+VYPGA +I+
Sbjct: 394 FAARTVITPDPNLNIQEIGVPEYFAKKLTYPVGVNFFNVEELRKMVQNGPDVYPGATLIE 453
Query: 74 NEDGSVVRISSSQAVQRESLA 94
NE+GS+++++ + +++ +
Sbjct: 454 NENGSLIKLTGGEENRKKRIG 474
>gi|410927310|ref|XP_003977092.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like
[Takifugu rubripes]
Length = 1749
Score = 283 bits (725), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 174/515 (33%), Positives = 287/515 (55%), Gaps = 34/515 (6%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNY 181
E + Y+ +E+++LSV + + +++G+ P LYDLA+GP ++ + C+TC ++
Sbjct: 13 ESMSFGVYSAEELRKLSVKAITNARFLDAVGNVAPNSLYDLALGP-ADHKEVCSTCYQDF 71
Query: 182 TKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGY 241
C GH+GH+ELP+PV N LFF + LLL+ SC +CH + P + L +NQ+KLLD G
Sbjct: 72 NNCPGHLGHVELPLPVYNPLFFDKLYLLLRGSCLVCHSLTCPRAALHLLLNQLKLLDHGA 131
Query: 242 VTQAKDLEETLFN--EENLRLHPAQLVQLVDSHVQSILAHGTKIC-DINDYKGGEELRSA 298
+ + +E+ L EEN + ++ +++ S+LA K D K E RS+
Sbjct: 132 IQEVYQIEQFLNQHLEENPKATGDEIEKILKDFTASVLAMTCKDAEDSKPVKHTVEKRSS 191
Query: 299 FVAQVLSRHVK-RKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIR 357
+ +K RKC C + + + + + +++ +D +
Sbjct: 192 LINDFWKIQMKTRKCPHCRSGRHVVRREHNSKLIVTLPGGESVGSQMDDDMMAG------ 245
Query: 358 KREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLD---TTKELIATDIMFIRSLVVPPNN 414
++ Y+ AS KLW NE FLKCL ++ + + +D+ F+ LVVPP
Sbjct: 246 --KRFYMTASVAREHTNKLWENEGFFLKCLFSGVEEMPSQQGDRCSDLFFLEMLVVPPCR 303
Query: 415 LRPLSM--EQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEA--------- 463
RP++ +QM + N Q+++ CG+++ +MA+ +E++ + +E
Sbjct: 304 YRPVNRLGDQMFTNGQTVN--MQAVMKDCGTIRK-LMALIAEEKTAVETEVMAPHQEDQT 360
Query: 464 -LKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQ 522
L I G TL +KL N W LQ +V+++ D+ ++ + G++Q+L+ K G+ R+
Sbjct: 361 FLSSIHGLTLTDKLYNIWIRLQTHVNIVFDSDMD---KMMMEKYPGIRQILEKKDGLFRK 417
Query: 523 NMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNV 582
+MMGKRV+FA RSVI PD Y+ + IG+PL FA LTYP PVTPWNV LR+ V+NGPNV
Sbjct: 418 HMMGKRVDFAARSVICPDMYIGTNEIGIPLVFATKLTYPQPVTPWNVKELRQAVLNGPNV 477
Query: 583 YPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
+PGA+M+ +EDG +S++ QR ++AK+L+TP
Sbjct: 478 HPGASMVIHEDGRKTILSATNTAQRTAVAKQLLTP 512
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/104 (50%), Positives = 72/104 (69%), Gaps = 2/104 (1%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI PD Y+ + IG+PL FA LTYP PVTPWNV LR+ V+NGPNV+PGA+M+
Sbjct: 426 FAARSVICPDMYIGTNEIGIPLVFATKLTYPQPVTPWNVKELRQAVLNGPNVHPGASMVI 485
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKIITRQ 117
+EDG +S++ QR ++AK+L+TP + H+ M K++ R
Sbjct: 486 HEDGRKTILSATNTAQRTAVAKQLLTPCPEPHK--MPIKVVNRH 527
>gi|240977019|ref|XP_002402573.1| DNA-directed RNA polymerase I largest subunit, putative [Ixodes
scapularis]
gi|215491199|gb|EEC00840.1| DNA-directed RNA polymerase I largest subunit, putative [Ixodes
scapularis]
Length = 1640
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 166/514 (32%), Positives = 274/514 (53%), Gaps = 28/514 (5%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
++ E+ +LSV+ V TF+ +GH GGL+D +GP S+R + C TCG + C GHI
Sbjct: 19 FSTDELLRLSVLSVTCSETFDIVGHPTKGGLHDSLLGP-SDRDEVCATCGLGFVACPGHI 77
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHI LP+ N LFFR + LL+ SCF C ++ P L + Q+++L G V ++L
Sbjct: 78 GHISLPLLTFNPLFFRTLYQLLRGSCFGCARLLSPPAVCQLTLAQLQVLQYGAVGAVQEL 137
Query: 249 EE---TLFNEENLRLHPA----QLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVA 301
+E +E + + L + +D V+SI+ + ++ + + + L FV
Sbjct: 138 QELAAEAITDEKGKASRSVMGLALKKRIDERVKSIMEGRANVKNVVECR--QRLIKTFVR 195
Query: 302 QVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQ 361
+ L RKC C ++ Q + +D ++ + + Q
Sbjct: 196 EHLM-GAPRKCPHCGDVRRGMTIQNNARF-VYTGRAQGMDIPEEEEEVPVKEESVDTGAQ 253
Query: 362 GYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSME 421
Y+ E + LW NE L+ L L + + D+ F+ +LVVPP RP++
Sbjct: 254 TYLTPLEARKHLRLLWQNESPLLRHLFGALGSDSQKHPVDMFFLEALVVPPTRFRPMNFM 313
Query: 422 QMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIR------------- 468
EH + +L C + ++V+ M+ + S+ + ++ R
Sbjct: 314 HGRKYEHPQTVSLSKVLQCCDAARAVLKLMERNQDSESSEDTMEMQRLQVCTFRQVVDKL 373
Query: 469 -GDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGK 527
G L++KL +W+ LQ V++++D++L+ + + G+KQ+L+ K G+ R++MMGK
Sbjct: 374 PGKDLSSKLHVAWNNLQVAVNVVVDSELD--RLSSNKATPGIKQILEKKEGLFRKHMMGK 431
Query: 528 RVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGAN 587
RVN+A RSVI+PDPY+ +D IGVP+ FA L+YP PVT NV+ LRK VINGPNVYPGA
Sbjct: 432 RVNYAARSVISPDPYIGVDEIGVPMVFATRLSYPEPVTDRNVSELRKAVINGPNVYPGAL 491
Query: 588 MIQNEDGSVVRISSSQAVQRESLAKRLITPEGNY 621
++++ DG+V R+ + V+RE++AK+L+TP ++
Sbjct: 492 LVEHGDGTVTRLDPTNRVRREAIAKQLMTPSDSF 525
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 54/113 (47%), Positives = 78/113 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDPY+ +D IGVP+ FA L+YP PVT NV+ LRK VINGPNVYPGA +++
Sbjct: 435 YAARSVISPDPYIGVDEIGVPMVFATRLSYPEPVTDRNVSELRKAVINGPNVYPGALLVE 494
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKIITRQEVVPEILKL 126
+ DG+V R+ + V+RE++AK+L+TP D + + K + R ++L L
Sbjct: 495 HGDGTVTRLDPTNRVRREAIAKQLMTPSDSFKNTLARCKTVHRHLRTGDMLLL 547
>gi|363733636|ref|XP_420851.3| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I
subunit RPA1 [Gallus gallus]
Length = 1703
Score = 282 bits (721), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 170/508 (33%), Positives = 278/508 (54%), Gaps = 26/508 (5%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
YT +E+++LSV + +P +++G+ GLYDLA+GP + + C TC N++ C GH
Sbjct: 20 YTAEEIRKLSVKAITNPQYLDNVGNPSINGLYDLALGPPDSK-EACATCMQNFSNCPGHF 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELP+ V N LFF + LL++ SC CH + L ++Q+K+L+ G + DL
Sbjct: 79 GHIELPLTVYNPLFFDKLYLLIRGSCLNCHMLTCTRAVVHLLLSQLKVLEHGLLHAVHDL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSR 306
E L F E++ ++ + ++ HV IL ++ K E R+ ++Q
Sbjct: 139 EVILNRFLEQSADATALEIEEELNHHVDEILQSQELSDQCSNVKNVCECRNKLISQFWKA 198
Query: 307 HV-KRKCIFCATPINAISYQQRKIIK----SFKIDKDNLDQSLDKSLNKSSNQIIRKREQ 361
H+ +KC C + + + + + S + K + D+ Q+ ++
Sbjct: 199 HMTSKKCPNCKSRRSLVRKEHNSKLTVTYPSTVLRKAGEEGIGDEPAAIDETQLGKR--- 255
Query: 362 GYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKE-LIATDIMFIRSLVVPPNNLRPLSM 420
GY+ + LW NE FL+ L P +D K+ + D+ F+ LVVPP+ RP++
Sbjct: 256 GYLTPMTAKEFVLALWKNEGFFLRYLFPGMDPHKDSAFSPDMFFLDLLVVPPSRYRPINR 315
Query: 421 EQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKE---------QSD--LLSEALKGIRG 469
+ + Q+++ ++ +++ M ++ +SD L L I G
Sbjct: 316 VGDRMFTNGQTVNLQAVMKDATLIRKLLVFMAKEQCQPIKIETGESDEPLDRSVLATIPG 375
Query: 470 DTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRV 529
T+ +KL N+W LQ +V+++ D+ ++ T + G++Q+L+ K G+ R++MMGKRV
Sbjct: 376 QTIADKLYNAWIRLQTHVNIVFDSDMDKMMT---EKYPGIRQLLEKKEGLFRKHMMGKRV 432
Query: 530 NFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 589
+FA RSVI PD Y+ + IG+P+ FA LTYP PVTPWNV LR+ VINGP V+PGA+M+
Sbjct: 433 DFAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQAVINGPKVHPGASMV 492
Query: 590 QNEDGSVVRISSSQAVQRESLAKRLITP 617
NEDGS +S+S QRE++AK+L+TP
Sbjct: 493 INEDGSRTVLSASSLTQREAIAKQLLTP 520
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 65/87 (74%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI PD Y+ + IG+P+ FA LTYP PVTPWNV LR+ VINGP V+PGA+M+
Sbjct: 434 FAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQAVINGPKVHPGASMVI 493
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +S+S QRE++AK+L+TP
Sbjct: 494 NEDGSRTVLSASSLTQREAIAKQLLTP 520
>gi|326919609|ref|XP_003206072.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like
[Meleagris gallopavo]
Length = 1646
Score = 281 bits (720), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 169/514 (32%), Positives = 276/514 (53%), Gaps = 32/514 (6%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
YT +E+++LSV + +P +++G+ GLYDLA+GP + + C TC N++ C GH
Sbjct: 20 YTAEEIRKLSVKAITNPQYLDNVGNPSVNGLYDLALGPPDSK-EACATCMQNFSNCPGHF 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELP+ V N LFF + LL++ SC CH + L ++Q+K+L+ G + DL
Sbjct: 79 GHIELPLTVYNPLFFDKLYLLIRGSCLNCHMLTCTRAVVHLLLSQLKVLEHGLLHAVHDL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSR 306
E L F E++ ++ + ++ HV IL ++ K E R+ ++Q
Sbjct: 139 EVILNRFLEQSADATALEIEEELNRHVDEILQSQELSDQCSNVKNVCECRNKLISQFWKA 198
Query: 307 HV-KRKCIFCATPINAISYQQRKIIK----SFKIDKDNLDQSLDKSLNKSSNQIIRKREQ 361
H+ +KC C + + + + + S K ++ D+ + Q+ ++
Sbjct: 199 HMTSKKCPNCKSRRSLVRKEHNSKLTVTYPSTVFHKAGVEGVTDEPVAIDETQLGKR--- 255
Query: 362 GYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKE-LIATDIMFIRSLVVPPNNLRPLSM 420
GY+ + LW NE FL+ L P +D K+ + D+ F+ LVVPP+ RP++
Sbjct: 256 GYLTPMTAKDFVLALWKNEGFFLRYLFPGMDPHKDSAFSPDMFFLDLLVVPPSRYRPINR 315
Query: 421 EQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNK-----------------EQSDLLSEA 463
+ + Q+++ ++ +++ M + E L
Sbjct: 316 VGDRMFTNGQTVNLQAVMKDATLIRKLLVFMAKEQCQPIKIVEDKIQTETGESEPLDRSV 375
Query: 464 LKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQN 523
L I G T+ +KL N+W LQ +V+++ D+ ++ T + G++Q+L+ K G+ R++
Sbjct: 376 LATIPGQTIADKLYNAWIRLQTHVNIVFDSDMDKLMT---EKYPGIRQLLEKKEGLFRKH 432
Query: 524 MMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVY 583
MMGKRV+FA RSVI PD Y+ + IG+P+ FA LTYP PVTPWNV LR+ VINGP V+
Sbjct: 433 MMGKRVDFAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQAVINGPKVH 492
Query: 584 PGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
PGA+M+ NEDGS +S+S QRE++AK+L+TP
Sbjct: 493 PGASMVINEDGSRTVLSASSLTQREAIAKQLLTP 526
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 65/87 (74%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI PD Y+ + IG+P+ FA LTYP PVTPWNV LR+ VINGP V+PGA+M+
Sbjct: 440 FAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQAVINGPKVHPGASMVI 499
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +S+S QRE++AK+L+TP
Sbjct: 500 NEDGSRTVLSASSLTQREAIAKQLLTP 526
>gi|405966808|gb|EKC32045.1| DNA-directed RNA polymerase I subunit RPA1 [Crassostrea gigas]
Length = 1685
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 177/522 (33%), Positives = 276/522 (52%), Gaps = 46/522 (8%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y E+ +LSV ++ +P TF+ L H GGLYD +GP +E+ D C TCG C GH+
Sbjct: 33 YNSSEILELSVKEITNPQTFDGLLHPTLGGLYDPKLGP-TEKDDKCQTCGMGQGGCPGHL 91
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHI LP+P N FF + LLK +CF CH++ + + + + + +LL+ G ++ D+
Sbjct: 92 GHITLPLPTYNPFFFSVLYQLLKGTCFDCHRLAVHSLKSAVLVQKFRLLEHGLISSVADV 151
Query: 249 EE--TLFNEENLRLHPA----QLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQ 302
+E T F E QL ++V S + + + I ++ K R AF+ +
Sbjct: 152 DEFATHFTSEYGNDAEEKILEQLNEIVLSKINNTIEQDFHIKNVEACK--NNTRRAFIHE 209
Query: 303 VLSRHVKRKCIFCAT---PINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKR 359
+ VK KC+ C T P+ + Q KI+ S + K + + +
Sbjct: 210 HFT--VKGKCVHCRTKRMPLRKV--QNAKIMLSTVTSSRTKKSTKPKQVKEKKDNDADDD 265
Query: 360 E-----------------QGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDI 402
E Q Y+ +++V +++W + LKCL L + TD
Sbjct: 266 EEDDDGEGEEEDDLESGTQIYLTSADVRDHLRQVWQKDQQVLKCLFHFLSGSSADYPTDS 325
Query: 403 MFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSE 462
FI + VPP+ RP+S + E+ + + ++L ++ ++ +E ++E
Sbjct: 326 FFIDVVPVPPSRFRPVSSLRDKKFENPQTQTLCNVLKGAALIRKILSLKSTQENGKEITE 385
Query: 463 ----ALKGIRGDTLNNKLQNSWHELQYNVDLLMDA---KLNINKTTGAHQIDGLKQMLDG 515
A+ I G TLN KLQN+ +LQ ++ ++D KL ++K TG +KQ+L+
Sbjct: 386 IEPTAITEIPGKTLNEKLQNALVKLQVVMNCIVDGDSDKLAVDKITG------VKQILEK 439
Query: 516 KTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKM 575
K G+ R+NMMGKRVNFA RSVI+PDP ++ IG+P FAK LT+P PVTPWNV LR+
Sbjct: 440 KEGLFRKNMMGKRVNFAARSVISPDPCISTCEIGIPEVFAKKLTFPQPVTPWNVHELRQA 499
Query: 576 VINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
VINGP+ YPGA++I DGS V ++ + VQRE++AK+L+TP
Sbjct: 500 VINGPDTYPGASLIDMPDGSKVILNKKEKVQREAIAKQLLTP 541
Score = 108 bits (271), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 50/93 (53%), Positives = 67/93 (72%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP ++ IG+P FAK LT+P PVTPWNV LR+ VINGP+ YPGA++I
Sbjct: 455 FAARSVISPDPCISTCEIGIPEVFAKKLTFPQPVTPWNVHELRQAVINGPDTYPGASLID 514
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHR 106
DGS V ++ + VQRE++AK+L+TP H+
Sbjct: 515 MPDGSKVILNKKEKVQREAIAKQLLTPSPDPHQ 547
>gi|312372078|gb|EFR20121.1| hypothetical protein AND_20631 [Anopheles darlingi]
Length = 1721
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 173/503 (34%), Positives = 278/503 (55%), Gaps = 21/503 (4%)
Query: 121 PEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNN 180
P L+ +T ++++++SV K+ +F+ LGH + GGLYD AMGP S RG+ C TC +
Sbjct: 8 PTNLEFSVFTAEDIRKISVAKITLARSFDELGHPLRGGLYDPAMGP-SNRGEICFTCARD 66
Query: 181 YTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAG 240
C+GH GHIE+ + V N F R + LL++SC C ++ I + L Q++L DAG
Sbjct: 67 ELHCEGHFGHIEIDLSVYNPFFVRTLYNLLRISCMSCTRLLIHDNVKALLELQLRLSDAG 126
Query: 241 YVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFV 300
Y+ +A++L+ + ++ P + + + + + D K +RSA V
Sbjct: 127 YIVEAEELD---VYKAKMQAFPTEPIPTEELNQYEEQLRNEPYNKLGDTKLSTAIRSAIV 183
Query: 301 AQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKS---SNQIIR 357
L V +KCI C + + K+ S K + L + LN + +Q+
Sbjct: 184 NNTLKECVLKKCIHCHAAVQKVRMSDGKL--SINWTKGDKKAFLVQKLNTTDVPEDQLTS 241
Query: 358 KREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLD--TTKELIATDIMFIRSLVVPPNNL 415
E ++A + + ++L+ E L+ L P++ + + TDI F+ + V P +
Sbjct: 242 SIE--VMIARDCKMYLRRLFDMEGPTLQLLFPMIRKMSRDQPFPTDIFFMDVVPVSPPKM 299
Query: 416 RPLS-MEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNN 474
RP+ E+ VEHS++ + IL + ++++++M N+ Q+ E + + D
Sbjct: 300 RPVRRTERGTVVEHSQSAILNHILLANSTVRAILMW--NEAQAKRNQEGTEEDQSD---- 353
Query: 475 KLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGR 534
+ Q S + D L+DA+ N A GLKQ+++ K G+IR +MMGKRVN+A R
Sbjct: 354 EAQLSTAKRVIGHDQLLDAQTR-NAKNAAVAPPGLKQVIEKKMGIIRMHMMGKRVNYAAR 412
Query: 535 SVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDG 594
+VITPDP + ++ IG+P FAK LTYPVPVTPWNV LR+ V+NGP+VYPGAN+I++ +G
Sbjct: 413 TVITPDPNIGVEEIGIPKLFAKKLTYPVPVTPWNVAELRQWVLNGPDVYPGANLIEDSNG 472
Query: 595 SVVRISSSQAVQRESLAKRLITP 617
V +ISS QR+S+AK L+TP
Sbjct: 473 RVSKISSFNVTQRQSMAKTLLTP 495
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 68/87 (78%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ R+VITPDP + ++ IG+P FAK LTYPVPVTPWNV LR+ V+NGP+VYPGAN+I+
Sbjct: 409 YAARTVITPDPNIGVEEIGIPKLFAKKLTYPVPVTPWNVAELRQWVLNGPDVYPGANLIE 468
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
+ +G V +ISS QR+S+AK L+TP
Sbjct: 469 DSNGRVSKISSFNVTQRQSMAKTLLTP 495
>gi|391344300|ref|XP_003746439.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Metaseiulus
occidentalis]
Length = 1726
Score = 275 bits (703), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 171/526 (32%), Positives = 270/526 (51%), Gaps = 42/526 (7%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
L + +E+ + SV+++ + TF+ +GH GGLYD MG + ER + C TC +
Sbjct: 16 LSFTTMSSEEILRQSVMEITNVQTFDLIGHPTRGGLYDSRMGAL-ERDEVCDTCSLSQLH 74
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVT 243
C GH+GH+ LP+P N ++FRD+ LL+ SC CH++ P + L + Q+++LD G V
Sbjct: 75 CPGHLGHVTLPLPAFNPIYFRDLHKLLRGSCLSCHRLLSPPAASQLILAQMQVLDYGLVG 134
Query: 244 QAKDLEETLFNEENLRLHPAQ------LVQLVDSHVQSILAHGTKICD----INDYKGGE 293
A ++EE E + AQ + V +Q L + D D K
Sbjct: 135 IAGEIEEVA--TEVINCMTAQKCDQNDIGSEVRRKIQKYLENKQLTGDDPRHAADVKNVV 192
Query: 294 ELRSAFVAQVLSRHV---KRKCIFCATPINAISYQQ-RKIIKSFKIDKDNLDQSLDKSLN 349
E++ V + +H+ ++KC FC I Q+ + I S K D D D +L LN
Sbjct: 193 EMKHTLVKNFVQKHLMRARKKCSFCGDTKTNIQVQEVARFIFSSKPD-DCEDDTL--VLN 249
Query: 350 KSSNQIIRKRE------QGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKEL---IAT 400
+ + K E Q ++ A + ++LW EH L L + + T
Sbjct: 250 EEDERKFLKAEYVEGGSQTFLTAVQARKHLRELWLKEHTVLGYLFGAMREAQARGIEHPT 309
Query: 401 DIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLL 460
D+ FI L + P RP + EH ++ + L+ +++ MK E
Sbjct: 310 DLFFIEVLAISPPKFRPCNFMNGRKYEHQLTTCLNRVVRTAHDLQDILVVMKANESDGPK 369
Query: 461 SEALKGIR---------GDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQ 511
+ ++ ++ G L KL + W LQ +++L D+ L+ N + + G+KQ
Sbjct: 370 EQKMEILKMNVSTLEPAGADLTIKLHHHWKLLQVRINVLYDSDLDRN----SKEKTGVKQ 425
Query: 512 MLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTL 571
+L+ K G++R++MMGKRVN+A RSVI+PDPY+N+D IG+P+ FA L+YP PVTP NV
Sbjct: 426 ILEKKAGLLRKHMMGKRVNYAARSVISPDPYINVDEIGIPMVFATKLSYPTPVTPRNVDQ 485
Query: 572 LRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
LR+ VINGP+ YPGA ++ EDG +R+ + +RE +AK L+TP
Sbjct: 486 LRRAVINGPDQYPGALSVEFEDGRKIRLDVASLTKREGIAKTLLTP 531
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 63/87 (72%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDPY+N+D IG+P+ FA L+YP PVTP NV LR+ VINGP+ YPGA ++
Sbjct: 445 YAARSVISPDPYINVDEIGIPMVFATKLSYPTPVTPRNVDQLRRAVINGPDQYPGALSVE 504
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
EDG +R+ + +RE +AK L+TP
Sbjct: 505 FEDGRKIRLDVASLTKREGIAKTLLTP 531
>gi|301615743|ref|XP_002937328.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Xenopus
(Silurana) tropicalis]
Length = 1665
Score = 275 bits (702), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 175/520 (33%), Positives = 281/520 (54%), Gaps = 41/520 (7%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+++LSV + +P ++LG+ + GLYDLA+GP + + C+TC ++ C GH+
Sbjct: 20 YSAEEIRKLSVKALTNPHYMDNLGNPMMNGLYDLALGPADGK-EVCSTCAQDFNNCPGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELP+ V N LFF + LL++ SCF CH + + L +NQ+K+LD G V + +L
Sbjct: 79 GHIELPLTVYNPLFFDKLYLLVRGSCFHCHLLTCHRSVIHLLLNQLKVLDRGAVHEVHEL 138
Query: 249 EETLFN--EENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVL-S 305
E L E N ++ + + H + +L K K R+ + +
Sbjct: 139 ENVLHRLLEANAAATGNEIREELGDHTRKVLKKYKKQPGGISVKNTCVTRNQLIGNFWKT 198
Query: 306 RHVKRKCIFCATPINAISYQQRKII-------KSFKIDKDNLDQSLDKSLNKSSNQIIRK 358
+ V KC C P + + + + S N D + SS + K
Sbjct: 199 QMVSAKCPNCKAPRSVVRKEHNSKLTIIMSSKSSASSKGGNKPAEGDTEVADSSQ--LAK 256
Query: 359 REQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIAT-DIMFIRSLVVPPNNLRP 417
R GY+ + + K LW NE FL+ L + E T D F+ +VVPP+ RP
Sbjct: 257 R--GYLTPNSTKELIKALWENEGFFLQHLFSGITGNGESAFTPDTFFLDIIVVPPSRYRP 314
Query: 418 LSM--EQMPPVEHSRNKLYQSILYSCGSLKSVIMAM-KNKEQSDLLSEA----------- 463
++ +Q+ H+ N Q++L ++ ++ M +++EQ ++E+
Sbjct: 315 VNRLGDQVFTNGHTVN--LQAVLKDVSMIQKLLAVMAQDQEQMPEVTESGMSLKEGEVTE 372
Query: 464 ------LKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKT 517
L + G +L +KL NSW LQ +V+++ D+ ++ T + G++Q+L+ K
Sbjct: 373 NIDRSFLATLMGQSLTDKLYNSWVRLQSHVNIVFDSDMDKLMT---EKYPGIRQVLEKKE 429
Query: 518 GMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVI 577
G+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ V+
Sbjct: 430 GLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVM 489
Query: 578 NGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
NGPNV+PGA+M+ +EDGS ++SS QRE++AK+L+TP
Sbjct: 490 NGPNVHPGASMVISEDGSRTILNSSNVSQREAVAKQLLTP 529
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 72/104 (69%), Gaps = 2/104 (1%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ V+NGPNV+PGA+M+
Sbjct: 443 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVMNGPNVHPGASMVI 502
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKIITRQ 117
+EDGS ++SS QRE++AK+L+TP + KI+ R
Sbjct: 503 SEDGSRTILNSSNVSQREAVAKQLLTPSTGAQ--TLAAKIVCRH 544
>gi|449501452|ref|XP_004176870.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I
subunit RPA1 [Taeniopygia guttata]
Length = 1636
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 167/508 (32%), Positives = 276/508 (54%), Gaps = 33/508 (6%)
Query: 136 QLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPV 195
+LSV + +P +++G+ GLYDLA+GP R + C TC N++ C GH GHIELP+
Sbjct: 8 KLSVKPITNPQYLDNVGNPAVNGLYDLALGPPDSR-EVCATCMQNFSNCPGHFGHIELPL 66
Query: 196 PVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETL--F 253
V N LFF + LL++ SC CH + P L ++Q+K+L+ G + DLE L F
Sbjct: 67 AVYNPLFFDKLYLLIRGSCLNCHMLTCPRAVVHLLLSQLKVLEKGLLHAVHDLEVILNKF 126
Query: 254 NEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHV-KRKC 312
E+ +++ + ++ HVQ +L ++ K E R+ V+Q H+ +KC
Sbjct: 127 VEQCADATGSEIEEELNRHVQEMLQSSQIRDRCSNVKNVRECRNKLVSQFWKAHMASKKC 186
Query: 313 IFCATPINAISYQQRKIIK----SFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASE 368
C + + + + + S K + LD++ +Q+ ++ GY+
Sbjct: 187 PNCKSRRSLVRKEHNSKLTVTYPSTVYHKPGEEGILDQTAGIDESQLGKR---GYLTPMT 243
Query: 369 VEADFKKLWTNEHLFLKCLIPVLDTTKEL-IATDIMFIRSLVVPPNNLRPLSMEQMPPVE 427
+ LW NE FL+ L P L + + D+ F+ LVVPP+ RP++
Sbjct: 244 AKEYILALWKNEGFFLRYLFPGLYPNESSGFSPDMFFLDLLVVPPSRYRPVNRLGDRLFT 303
Query: 428 HSRNKLYQSILYSCGSLKSVIMAM-KNKEQSDLLSEALKGIR-----------------G 469
+ + Q+++ ++ +++ M K + Q ++E ++ +R G
Sbjct: 304 NGQTVNLQAVMKDAQVIRKLLVFMAKEQCQPIKITEEIQTVRTGEDTEPLDRSVLTTIPG 363
Query: 470 DTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRV 529
++ +KL N+W LQ +V+++ D+ ++ T + G++Q+L+ K G+ R++MMGKRV
Sbjct: 364 QSIADKLYNAWIRLQSHVNIVFDSDMDKLMT---EKYPGIRQLLEKKEGLFRKHMMGKRV 420
Query: 530 NFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 589
+FA RSVI PD Y+ + IG+P+ FA LTYP PVTPWNV LR+ VINGP V+PGA+M+
Sbjct: 421 DFAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQAVINGPKVHPGASMV 480
Query: 590 QNEDGSVVRISSSQAVQRESLAKRLITP 617
NEDGS +S++ QRE++AK+L+TP
Sbjct: 481 INEDGSHTVLSATSLTQREAIAKQLLTP 508
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 65/87 (74%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI PD Y+ + IG+P+ FA LTYP PVTPWNV LR+ VINGP V+PGA+M+
Sbjct: 422 FAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQAVINGPKVHPGASMVI 481
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +S++ QRE++AK+L+TP
Sbjct: 482 NEDGSHTVLSATSLTQREAIAKQLLTP 508
>gi|183985780|gb|AAI66364.1| LOC100158635 protein [Xenopus (Silurana) tropicalis]
Length = 1424
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 174/520 (33%), Positives = 280/520 (53%), Gaps = 41/520 (7%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+++LSV + +P ++LG+ + GLYDLA+GP + + C+TC ++ C GH+
Sbjct: 20 YSAEEIRKLSVKALTNPHYMDNLGNPMMNGLYDLALGPADGK-EVCSTCAQDFNNCPGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELP+ V N LFF + LL++ SCF CH + + L +NQ+K+LD G V + +L
Sbjct: 79 GHIELPLTVYNPLFFDKLYLLVRGSCFHCHLLTCHRSVIHLLLNQLKVLDRGAVHEVHEL 138
Query: 249 EETLFN--EENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVL-S 305
E L E N ++ + + H + +L K K R+ + +
Sbjct: 139 ENVLHRLLEANAAATGNEIREELGDHTRKVLKKYKKQPGGISVKNTCVTRNQLIGNFWKT 198
Query: 306 RHVKRKCIFCATPINAISYQQRKII-------KSFKIDKDNLDQSLDKSLNKSSNQIIRK 358
+ V KC C P + + + + S N D + SS + K
Sbjct: 199 QMVSAKCPNCKAPRSVVRKEHNSKLTIIMSSKSSTSSKGGNKPAEGDTEVADSSQ--LAK 256
Query: 359 REQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIAT-DIMFIRSLVVPPNNLRP 417
R GY+ + + K LW NE FL+ L + E T D F+ +VVPP+ RP
Sbjct: 257 R--GYLTPNSTKELIKALWENEGFFLQHLFSGITGNGESAFTPDTFFLDIIVVPPSRYRP 314
Query: 418 LSM--EQMPPVEHSRNKLYQSILYSCGSLKSVI-----------------MAMKNKEQSD 458
++ +Q+ H+ N Q++L ++ ++ M++K E ++
Sbjct: 315 VNRLGDQVFTNGHTVN--LQAVLKDVSMIQKLLAVMAQDQEQMPEVTKSGMSLKEGEVTE 372
Query: 459 LLSEA-LKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKT 517
+ + L + G +L +KL NSW LQ +V+++ D+ ++ T + G++Q+L+ K
Sbjct: 373 NIDRSFLATLMGQSLTDKLYNSWVRLQSHVNIVFDSDMDKLMT---EKYPGIRQVLEKKE 429
Query: 518 GMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVI 577
G+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ V+
Sbjct: 430 GLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVM 489
Query: 578 NGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
NGPNV+PGA+M+ +EDGS ++SS QRE++AK+L+TP
Sbjct: 490 NGPNVHPGASMVISEDGSRTILNSSNVSQREAVAKQLLTP 529
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 72/104 (69%), Gaps = 2/104 (1%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ V+NGPNV+PGA+M+
Sbjct: 443 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVMNGPNVHPGASMVI 502
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKIITRQ 117
+EDGS ++SS QRE++AK+L+TP + KI+ R
Sbjct: 503 SEDGSRTILNSSNVSQREAVAKQLLTPSTGAQ--TLAAKIVCRH 544
>gi|26350055|dbj|BAC38667.1| unnamed protein product [Mus musculus]
Length = 1424
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 172/522 (32%), Positives = 278/522 (53%), Gaps = 42/522 (8%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P + LG+ GLYDLA+GP + + C TC ++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYVDYLGNPSANGLYDLALGPADSK-EVCATCVQDFNNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHI+LP+ V N F + LLL+ SC CH + P + L I+Q+++L+ G + +L
Sbjct: 79 GHIDLPLTVYNPFLFDKLYLLLRGSCLSCHMLTCPRAAIYLLISQLRVLEVGALQAVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSR 306
E L F EE ++ + ++ + IL + K E RS VAQ
Sbjct: 139 ERILSRFLEETGDPSAFEIQEELEEYTSKILQNNLLGSQGTHVKNVCESRSKLVAQFWKT 198
Query: 307 HVKRK-CIFCATPINAISYQQR-KIIKSF------KIDKDN--LDQSLDKSLNKSSNQII 356
H+ K C C T + + + K+I ++ K D++ L + + ++ Q+
Sbjct: 199 HMAAKQCPHCKTGRSVVRKEHNSKLIITYPATVHKKSDQEGTELPEGVPEAPGIDKAQMG 258
Query: 357 RKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTT--KELIATDIMFIRSLVVPPNN 414
++ GY+ S + +W NE FL L LD + + F+ +VVPP+
Sbjct: 259 KR---GYLTPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGPESSFNPSMFFLDFIVVPPSR 315
Query: 415 LRPLSM--EQMPPVEHSRNKLYQSILYSCGSLKSVIMAM----------------KNKEQ 456
RP++ +QM + N Q+++ ++ ++ M K +
Sbjct: 316 YRPVNRLGDQMFTNGQTVN--LQAVMKDAVLIRKLLALMAQEQKLPCEMTELTIDKENDS 373
Query: 457 SDLLSEALKGIR-GDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDG 515
S + + G+ G +L +KL N W LQ +V+++ D++++ + G++Q+L+
Sbjct: 374 SVAIDRSFLGLLPGPSLTDKLYNIWIRLQSHVNIVFDSEMD---KLMLEKYPGIRQILEK 430
Query: 516 KTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKM 575
K G+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+
Sbjct: 431 KEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQA 490
Query: 576 VINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
VINGPNV+PGA+M+ NEDGS +SS A QRE++AK+L+TP
Sbjct: 491 VINGPNVHPGASMVINEDGSRTALSSVDAAQREAVAKQLLTP 532
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 67/87 (77%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 446 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 505
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +SS A QRE++AK+L+TP
Sbjct: 506 NEDGSRTALSSVDAAQREAVAKQLLTP 532
>gi|2330007|gb|AAB66718.1| RNA polymerase I largest subunit [Mus musculus]
Length = 1717
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 172/522 (32%), Positives = 278/522 (53%), Gaps = 42/522 (8%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P + LG+ GLYDLA+GP + + C TC ++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYVDYLGNPSANGLYDLALGPADSK-EVCATCVQDFNNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHI+LP+ V N F + LLL+ SC CH + P + L I+Q+++L+ G + +L
Sbjct: 79 GHIDLPLTVYNPFLFDKLYLLLRGSCLSCHMLTCPRAAIYLLISQLRVLEVGALQAVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSR 306
E L F EE ++ + ++ + IL + K E RS VAQ
Sbjct: 139 ERILSRFLEETGDPSAFEIQEELEEYTSKILQNNLLGSQGTHVKNVCESRSKLVAQFWKT 198
Query: 307 HVKRK-CIFCATPINAISYQQ-RKIIKSF------KIDKDN--LDQSLDKSLNKSSNQII 356
H+ K C C T + + + K+I ++ K D++ L + + ++ Q+
Sbjct: 199 HMAAKQCPHCKTGRSVVRKEHNSKLIITYPATVHKKSDQEGTELPEGVPEAPGIDKAQMG 258
Query: 357 RKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTT--KELIATDIMFIRSLVVPPNN 414
++ GY+ S + +W NE FL L LD + + F+ +VVPP+
Sbjct: 259 KR---GYLTPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGPESSFNPSMFFLDFIVVPPSR 315
Query: 415 LRPLSM--EQMPPVEHSRNKLYQSILYSCGSLKSVIMAM----------------KNKEQ 456
RP++ +QM + N Q+++ ++ ++ M K +
Sbjct: 316 YRPVNRLGDQMFTNGQTVN--LQAVMKDAVLIRKLLALMAQEQKLPCEMTELTIDKENDS 373
Query: 457 SDLLSEALKGIR-GDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDG 515
S + + G+ G +L +KL N W LQ +V+++ D++++ + G++Q+L+
Sbjct: 374 SVAIDRSFLGLLPGPSLTDKLYNIWIRLQSHVNIVFDSEMD---KLMLEKYPGIRQILEK 430
Query: 516 KTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKM 575
K G+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+
Sbjct: 431 KEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQA 490
Query: 576 VINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
VINGPNV+PGA+M+ NEDGS +SS A QRE++AK+L+TP
Sbjct: 491 VINGPNVHPGASMVINEDGSRTALSSVDAAQREAVAKQLLTP 532
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 67/87 (77%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 446 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 505
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +SS A QRE++AK+L+TP
Sbjct: 506 NEDGSRTALSSVDAAQREAVAKQLLTP 532
>gi|116283856|gb|AAH34785.1| Polr1a protein [Mus musculus]
Length = 1366
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 172/522 (32%), Positives = 278/522 (53%), Gaps = 42/522 (8%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P + LG+ GLYDLA+GP + + C TC ++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYVDYLGNPSANGLYDLALGPADSK-EVCATCVQDFNNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHI+LP+ V N F + LLL+ SC CH + P + L I+Q+++L+ G + +L
Sbjct: 79 GHIDLPLTVYNPFLFDKLYLLLRGSCLSCHMLTCPRAAIYLLISQLRVLEVGALQAVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSR 306
E L F EE ++ + ++ + IL + K E RS VAQ
Sbjct: 139 ERILSRFLEETGDPSAFEIQEELEEYTSKILQNNLLGSQGTHVKNVCESRSKLVAQFWKT 198
Query: 307 HVKRK-CIFCATPINAISYQQ-RKIIKSF------KIDKDN--LDQSLDKSLNKSSNQII 356
H+ K C C T + + + K+I ++ K D++ L + + ++ Q+
Sbjct: 199 HMAAKQCPHCKTGRSVVRKEHNSKLIITYPATVHKKSDQEGTELPEGVPEAPGIDKAQMG 258
Query: 357 RKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTT--KELIATDIMFIRSLVVPPNN 414
++ GY+ S + +W NE FL L LD + + F+ +VVPP+
Sbjct: 259 KR---GYLTPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGPESSFNPSMFFLDFIVVPPSR 315
Query: 415 LRPLSM--EQMPPVEHSRNKLYQSILYSCGSLKSVIMAM----------------KNKEQ 456
RP++ +QM + N Q+++ ++ ++ M K +
Sbjct: 316 YRPVNRLGDQMFTNGQTVN--LQAVMKDAVLIRKLLALMAQEQKLPCEMTELTIDKENDS 373
Query: 457 SDLLSEALKGIR-GDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDG 515
S + + G+ G +L +KL N W LQ +V+++ D++++ + G++Q+L+
Sbjct: 374 SVAIDRSFLGLLPGPSLTDKLYNIWIRLQSHVNIVFDSEMD---KLMLEKYPGIRQILEK 430
Query: 516 KTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKM 575
K G+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+
Sbjct: 431 KEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQA 490
Query: 576 VINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
VINGPNV+PGA+M+ NEDGS +SS A QRE++AK+L+TP
Sbjct: 491 VINGPNVHPGASMVINEDGSRTALSSVDAAQREAVAKQLLTP 532
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 67/87 (77%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 446 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 505
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +SS A QRE++AK+L+TP
Sbjct: 506 NEDGSRTALSSVDAAQREAVAKQLLTP 532
>gi|74144282|dbj|BAE36009.1| unnamed protein product [Mus musculus]
Length = 1424
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 172/522 (32%), Positives = 278/522 (53%), Gaps = 42/522 (8%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P + LG+ GLYDLA+GP + + C TC ++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYVDYLGNPSANGLYDLALGPADSK-EVCATCVQDFNNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHI+LP+ V N F + LLL+ SC CH + P + L I+Q+++L+ G + +L
Sbjct: 79 GHIDLPLTVYNPFLFDKLYLLLRGSCLSCHMLTCPRAAIYLLISQLRVLEVGALQAVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSR 306
E L F EE ++ + ++ + IL + K E RS VAQ
Sbjct: 139 ERILSRFLEETGDPSAFEIQEELEEYTSKILQNNLLGSQGTHVKNVCESRSKLVAQFWKT 198
Query: 307 HVKRK-CIFCATPINAISYQQR-KIIKSF------KIDKDN--LDQSLDKSLNKSSNQII 356
H+ K C C T + + + K+I ++ K D++ L + + ++ Q+
Sbjct: 199 HMAAKQCPHCKTGRSVVRKEHNSKLIITYPATVHKKSDQEGTELPEGVPEAPGIDKAQMG 258
Query: 357 RKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTT--KELIATDIMFIRSLVVPPNN 414
++ GY+ S + +W NE FL L LD + + F+ +VVPP+
Sbjct: 259 KR---GYLTPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGPESSFNPSMFFLDFIVVPPSR 315
Query: 415 LRPLSM--EQMPPVEHSRNKLYQSILYSCGSLKSVIMAM----------------KNKEQ 456
RP++ +QM + N Q+++ ++ ++ M K +
Sbjct: 316 YRPVNRLGDQMFTNGQTVN--LQAVMKDAVLIRKLLALMAQEQKLPCEMTELTIDKENDS 373
Query: 457 SDLLSEALKGIR-GDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDG 515
S + + G+ G +L +KL N W LQ +V+++ D++++ + G++Q+L+
Sbjct: 374 SVAIDRSFLGLLPGPSLTDKLYNIWIRLQSHVNIVFDSEMD---KLMLEKYPGIRQILEK 430
Query: 516 KTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKM 575
K G+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+
Sbjct: 431 KEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQA 490
Query: 576 VINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
VINGPNV+PGA+M+ NEDGS +SS A QRE++AK+L+TP
Sbjct: 491 VINGPNVHPGASMVINEDGSRTALSSVDAAQREAVAKQLLTP 532
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 67/87 (77%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 446 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 505
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +SS A QRE++AK+L+TP
Sbjct: 506 NEDGSRTALSSVDAAQREAVAKQLLTP 532
>gi|74145323|dbj|BAE36122.1| unnamed protein product [Mus musculus]
Length = 1361
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 172/522 (32%), Positives = 278/522 (53%), Gaps = 42/522 (8%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P + LG+ GLYDLA+GP + + C TC ++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYVDYLGNPSANGLYDLALGPADSK-EVCATCVQDFNNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHI+LP+ V N F + LLL+ SC CH + P + L I+Q+++L+ G + +L
Sbjct: 79 GHIDLPLTVYNPFLFDKLYLLLRGSCLSCHMLTCPRAAIYLLISQLRVLEVGALQAVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSR 306
E L F EE ++ + ++ + IL + K E RS VAQ
Sbjct: 139 ERILSRFLEETGDPSAFEIQEELEEYTSKILQNNLLGSQGTHVKNVCESRSKLVAQFWKT 198
Query: 307 HVKRK-CIFCATPINAISYQQ-RKIIKSF------KIDKDN--LDQSLDKSLNKSSNQII 356
H+ K C C T + + + K+I ++ K D++ L + + ++ Q+
Sbjct: 199 HMAAKQCPHCKTGRSVVRKEHNSKLIITYPATVHKKSDQEGTELPEGVPEAPGIDKAQMG 258
Query: 357 RKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTT--KELIATDIMFIRSLVVPPNN 414
++ GY+ S + +W NE FL L LD + + F+ +VVPP+
Sbjct: 259 KR---GYLTPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGPESSFNPSMFFLDFIVVPPSR 315
Query: 415 LRPLSM--EQMPPVEHSRNKLYQSILYSCGSLKSVIMAM----------------KNKEQ 456
RP++ +QM + N Q+++ ++ ++ M K +
Sbjct: 316 YRPVNRLGDQMFTNGQTVN--LQAVMKDAVLIRKLLALMAQEQKLPCEMTELTIDKENDS 373
Query: 457 SDLLSEALKGIR-GDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDG 515
S + + G+ G +L +KL N W LQ +V+++ D++++ + G++Q+L+
Sbjct: 374 SVAIDRSFLGLLPGPSLTDKLYNIWIRLQSHVNIVFDSEMD---KLMLEKYPGIRQILEK 430
Query: 516 KTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKM 575
K G+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+
Sbjct: 431 KEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQA 490
Query: 576 VINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
VINGPNV+PGA+M+ NEDGS +SS A QRE++AK+L+TP
Sbjct: 491 VINGPNVHPGASMVINEDGSRTALSSVDAAQREAVAKQLLTP 532
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 67/87 (77%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 446 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 505
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +SS A QRE++AK+L+TP
Sbjct: 506 NEDGSRTALSSVDAAQREAVAKQLLTP 532
>gi|29165712|gb|AAH49190.1| Polr1a protein [Mus musculus]
Length = 1366
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 172/522 (32%), Positives = 278/522 (53%), Gaps = 42/522 (8%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P + LG+ GLYDLA+GP + + C TC ++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYVDYLGNPSANGLYDLALGPADSK-EVCATCVQDFNNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHI+LP+ V N F + LLL+ SC CH + P + L I+Q+++L+ G + +L
Sbjct: 79 GHIDLPLTVYNPFLFDKLYLLLRGSCLSCHMLTCPRAAIYLLISQLRVLEVGALQAVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSR 306
E L F EE ++ + ++ + IL + K E RS VAQ
Sbjct: 139 ERILSRFLEETGDPSAFEIQEELEEYTSKILQNNLLGSQGTHVKNVCESRSKLVAQFWKT 198
Query: 307 HVKRK-CIFCATPINAISYQQ-RKIIKSF------KIDKDN--LDQSLDKSLNKSSNQII 356
H+ K C C T + + + K+I ++ K D++ L + + ++ Q+
Sbjct: 199 HMAAKQCPHCKTGRSVVRKEHNSKLIITYPATVHKKSDQEGTELPEGVPEAPGIDKAQMG 258
Query: 357 RKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTT--KELIATDIMFIRSLVVPPNN 414
++ GY+ S + +W NE FL L LD + + F+ +VVPP+
Sbjct: 259 KR---GYLTPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGPESSFNPSMFFLDFIVVPPSR 315
Query: 415 LRPLSM--EQMPPVEHSRNKLYQSILYSCGSLKSVIMAM----------------KNKEQ 456
RP++ +QM + N Q+++ ++ ++ M K +
Sbjct: 316 YRPVNRLGDQMFTNGQTVN--LQAVMKDAVLIRKLLALMAQEQKLPCEMTELTIDKENDS 373
Query: 457 SDLLSEALKGIR-GDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDG 515
S + + G+ G +L +KL N W LQ +V+++ D++++ + G++Q+L+
Sbjct: 374 SVAIDRSFLGLLPGPSLTDKLYNIWIRLQSHVNIVFDSEMD---KLMLEKYPGIRQILEK 430
Query: 516 KTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKM 575
K G+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+
Sbjct: 431 KEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQA 490
Query: 576 VINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
VINGPNV+PGA+M+ NEDGS +SS A QRE++AK+L+TP
Sbjct: 491 VINGPNVHPGASMVINEDGSRTALSSVDAAQREAVAKQLLTP 532
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 67/87 (77%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 446 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 505
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +SS A QRE++AK+L+TP
Sbjct: 506 NEDGSRTALSSVDAAQREAVAKQLLTP 532
>gi|116283365|gb|AAH10254.1| Polr1a protein [Mus musculus]
Length = 1366
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 172/522 (32%), Positives = 278/522 (53%), Gaps = 42/522 (8%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P + LG+ GLYDLA+GP + + C TC ++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYVDYLGNPSANGLYDLALGPADSK-EVCATCVQDFNNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHI+LP+ V N F + LLL+ SC CH + P + L I+Q+++L+ G + +L
Sbjct: 79 GHIDLPLTVYNPFLFDKLYLLLRGSCLSCHMLTCPRAAIYLLISQLRVLEVGALQAVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSR 306
E L F EE ++ + ++ + IL + K E RS VAQ
Sbjct: 139 ERILSRFLEETGDPSAFEIQEELEEYTSKILQNNLLGSQGTHVKNVCESRSKLVAQFWKT 198
Query: 307 HVKRK-CIFCATPINAISYQQ-RKIIKSF------KIDKDN--LDQSLDKSLNKSSNQII 356
H+ K C C T + + + K+I ++ K D++ L + + ++ Q+
Sbjct: 199 HMAAKQCPHCKTGRSVVRKEHNSKLIITYPATVHKKSDQEGTELPEGVPEAPGIDKAQMG 258
Query: 357 RKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTT--KELIATDIMFIRSLVVPPNN 414
++ GY+ S + +W NE FL L LD + + F+ +VVPP+
Sbjct: 259 KR---GYLTPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGPESSFNPSMFFLDFIVVPPSR 315
Query: 415 LRPLSM--EQMPPVEHSRNKLYQSILYSCGSLKSVIMAM----------------KNKEQ 456
RP++ +QM + N Q+++ ++ ++ M K +
Sbjct: 316 YRPVNRLGDQMFTNGQTVN--LQAVMKDAVLIRKLLALMAQEQKLPCEMTELTIDKENDS 373
Query: 457 SDLLSEALKGIR-GDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDG 515
S + + G+ G +L +KL N W LQ +V+++ D++++ + G++Q+L+
Sbjct: 374 SVAIDRSFLGLLPGPSLTDKLYNIWIRLQSHVNIVFDSEMD---KLMLEKYPGIRQILEK 430
Query: 516 KTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKM 575
K G+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+
Sbjct: 431 KEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQA 490
Query: 576 VINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
VINGPNV+PGA+M+ NEDGS +SS A QRE++AK+L+TP
Sbjct: 491 VINGPNVHPGASMVINEDGSRTALSSVDAAQREAVAKQLLTP 532
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 67/87 (77%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 446 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 505
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +SS A QRE++AK+L+TP
Sbjct: 506 NEDGSRTALSSVDAAQREAVAKQLLTP 532
>gi|74184497|dbj|BAE27874.1| unnamed protein product [Mus musculus]
Length = 1717
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 172/522 (32%), Positives = 278/522 (53%), Gaps = 42/522 (8%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P + LG+ GLYDLA+GP + + C TC ++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYVDYLGNPSANGLYDLALGPADSK-EVCATCVQDFNNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHI+LP+ V N F + LLL+ SC CH + P + L I+Q+++L+ G + +L
Sbjct: 79 GHIDLPLTVYNPFLFDKLYLLLRGSCLSCHMLTCPRAAIYLLISQLRVLEVGALQAVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSR 306
E L F EE ++ + ++ + IL + K E RS VAQ
Sbjct: 139 ERILSRFLEETGDPSAFEIQEELEEYTSKILQNNLLGSQGTHVKNVCESRSKLVAQFWKT 198
Query: 307 HVKRK-CIFCATPINAISYQQ-RKIIKSF------KIDKDN--LDQSLDKSLNKSSNQII 356
H+ K C C T + + + K+I ++ K D++ L + + ++ Q+
Sbjct: 199 HMAAKQCPHCKTGRSVVRKEHNSKLIITYPATVHKKSDQEGTELPEGVPEAPGIDKAQMG 258
Query: 357 RKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTT--KELIATDIMFIRSLVVPPNN 414
++ GY+ S + +W NE FL L LD + + F+ +VVPP+
Sbjct: 259 KR---GYLTPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGPESSFNPSMFFLDFIVVPPSR 315
Query: 415 LRPLSM--EQMPPVEHSRNKLYQSILYSCGSLKSVIMAM----------------KNKEQ 456
RP++ +QM + N Q+++ ++ ++ M K +
Sbjct: 316 YRPVNRLGDQMFTNGQTVN--LQAVMKDAVLIRKLLALMAQEQKLPCEMTELTIDKENDS 373
Query: 457 SDLLSEALKGIR-GDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDG 515
S + + G+ G +L +KL N W LQ +V+++ D++++ + G++Q+L+
Sbjct: 374 SVAIDRSFLGLLPGPSLTDKLYNIWIRLQSHVNIVFDSEMD---KLMLEKYPGIRQILEK 430
Query: 516 KTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKM 575
K G+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+
Sbjct: 431 KEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQA 490
Query: 576 VINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
VINGPNV+PGA+M+ NEDGS +SS A QRE++AK+L+TP
Sbjct: 491 VINGPNVHPGASMVINEDGSRTALSSVDAAQREAVAKQLLTP 532
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 67/87 (77%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 446 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 505
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +SS A QRE++AK+L+TP
Sbjct: 506 NEDGSRTALSSVDAAQREAVAKQLLTP 532
>gi|256985188|ref|NP_033114.3| DNA-directed RNA polymerase I subunit RPA1 [Mus musculus]
gi|56405300|sp|O35134.2|RPA1_MOUSE RecName: Full=DNA-directed RNA polymerase I subunit RPA1; Short=RNA
polymerase I subunit A1; AltName: Full=DNA-directed RNA
polymerase I largest subunit; AltName: Full=DNA-directed
RNA polymerase I subunit A; AltName: Full=RNA polymerase
I 194 kDa subunit; Short=RPA194
Length = 1717
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 172/522 (32%), Positives = 278/522 (53%), Gaps = 42/522 (8%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P + LG+ GLYDLA+GP + + C TC ++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYVDYLGNPSANGLYDLALGPADSK-EVCATCVQDFNNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHI+LP+ V N F + LLL+ SC CH + P + L I+Q+++L+ G + +L
Sbjct: 79 GHIDLPLTVYNPFLFDKLYLLLRGSCLSCHMLTCPRAAIYLLISQLRVLEVGALQAVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSR 306
E L F EE ++ + ++ + IL + K E RS VAQ
Sbjct: 139 ERILSRFLEETGDPSAFEIQEELEEYTSKILQNNLLGSQGTHVKNVCESRSKLVAQFWKT 198
Query: 307 HVKRK-CIFCATPINAISYQQR-KIIKSF------KIDKDN--LDQSLDKSLNKSSNQII 356
H+ K C C T + + + K+I ++ K D++ L + + ++ Q+
Sbjct: 199 HMAAKQCPHCKTGRSVVRKEHNSKLIITYPATVHKKSDQEGTELPEGVPEAPGIDKAQMG 258
Query: 357 RKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTT--KELIATDIMFIRSLVVPPNN 414
++ GY+ S + +W NE FL L LD + + F+ +VVPP+
Sbjct: 259 KR---GYLTPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGPESSFNPSMFFLDFIVVPPSR 315
Query: 415 LRPLSM--EQMPPVEHSRNKLYQSILYSCGSLKSVIMAM----------------KNKEQ 456
RP++ +QM + N Q+++ ++ ++ M K +
Sbjct: 316 YRPVNRLGDQMFTNGQTVN--LQAVMKDAVLIRKLLALMAQEQKLPCEMTELTIDKENDS 373
Query: 457 SDLLSEALKGIR-GDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDG 515
S + + G+ G +L +KL N W LQ +V+++ D++++ + G++Q+L+
Sbjct: 374 SVAIDRSFLGLLPGPSLTDKLYNIWIRLQSHVNIVFDSEMD---KLMLEKYPGIRQILEK 430
Query: 516 KTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKM 575
K G+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+
Sbjct: 431 KEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQA 490
Query: 576 VINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
VINGPNV+PGA+M+ NEDGS +SS A QRE++AK+L+TP
Sbjct: 491 VINGPNVHPGASMVINEDGSRTALSSVDAAQREAVAKQLLTP 532
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 67/87 (77%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 446 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 505
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +SS A QRE++AK+L+TP
Sbjct: 506 NEDGSRTALSSVDAAQREAVAKQLLTP 532
>gi|31753226|gb|AAH53744.1| Polymerase (RNA) I polypeptide A [Mus musculus]
Length = 1717
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 172/522 (32%), Positives = 278/522 (53%), Gaps = 42/522 (8%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P + LG+ GLYDLA+GP + + C TC ++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYVDYLGNPSANGLYDLALGPADSK-EVCATCVQDFNNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHI+LP+ V N F + LLL+ SC CH + P + L I+Q+++L+ G + +L
Sbjct: 79 GHIDLPLTVYNPFLFDKLYLLLRGSCLSCHMLTCPRAAIYLLISQLRVLEVGALQAVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSR 306
E L F EE ++ + ++ + IL + K E RS VAQ
Sbjct: 139 ERILSRFLEETGDPSAFEIQEELEEYTSKILQNNLLGSQGTHVKNVCESRSKLVAQFWKT 198
Query: 307 HVKRK-CIFCATPINAISYQQ-RKIIKSF------KIDKDN--LDQSLDKSLNKSSNQII 356
H+ K C C T + + + K+I ++ K D++ L + + ++ Q+
Sbjct: 199 HMAAKQCPHCKTGRSVVRKEHNSKLIITYPATVHKKSDQEGTELPEGVPEAPGIDKAQMG 258
Query: 357 RKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTT--KELIATDIMFIRSLVVPPNN 414
++ GY+ S + +W NE FL L LD + + F+ +VVPP+
Sbjct: 259 KR---GYLTPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGPESSFNPSMFFLDFIVVPPSR 315
Query: 415 LRPLSM--EQMPPVEHSRNKLYQSILYSCGSLKSVIMAM----------------KNKEQ 456
RP++ +QM + N Q+++ ++ ++ M K +
Sbjct: 316 YRPVNRLGDQMFTNGQTVN--LQAVMKDAVLIRKLLALMAQEQKLPCEMTELTIDKENDS 373
Query: 457 SDLLSEALKGIR-GDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDG 515
S + + G+ G +L +KL N W LQ +V+++ D++++ + G++Q+L+
Sbjct: 374 SVAIDRSFLGLLPGPSLTDKLYNIWIRLQSHVNIVFDSEMD---KLMLEKYPGIRQILEK 430
Query: 516 KTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKM 575
K G+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+
Sbjct: 431 KEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQA 490
Query: 576 VINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
VINGPNV+PGA+M+ NEDGS +SS A QRE++AK+L+TP
Sbjct: 491 VINGPNVHPGASMVINEDGSRTALSSVDAAQREAVAKQLLTP 532
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 67/87 (77%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 446 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 505
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +SS A QRE++AK+L+TP
Sbjct: 506 NEDGSRTALSSVDAAQREAVAKQLLTP 532
>gi|148666542|gb|EDK98958.1| RNA polymerase 1-4 [Mus musculus]
Length = 1717
Score = 269 bits (688), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 171/522 (32%), Positives = 278/522 (53%), Gaps = 42/522 (8%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P + LG+ GLYDLA+GP + + C TC ++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYVDYLGNPSANGLYDLALGPADSK-EVCATCVQDFNNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHI+LP+ V N F + LLL+ SC CH + P + L I+Q+++L+ G + +L
Sbjct: 79 GHIDLPLTVYNPFLFDKLYLLLRGSCLSCHMLTCPRAAIYLLISQLRVLEVGALQAVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSR 306
E L F EE ++ + ++ + IL + K E RS VAQ
Sbjct: 139 ERILSRFLEETGDPSAFEIQEELEEYTSKILQNNLLGSQGTHVKNVCESRSKLVAQFWKT 198
Query: 307 HVKRK-CIFCATPINAISYQQR-KIIKSF------KIDKDN--LDQSLDKSLNKSSNQII 356
H+ K C C T + + + K+I ++ K D++ L + + ++ Q+
Sbjct: 199 HMAAKQCPHCKTGRSVVRKEHNSKLIITYPATVHKKSDQEGTELPEGVPEAPGIDKAQMG 258
Query: 357 RKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTT--KELIATDIMFIRSLVVPPNN 414
++ GY+ S + +W NE FL L LD + + F+ +VVPP+
Sbjct: 259 KR---GYLTPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGPESSFNPSMFFLDFIVVPPSR 315
Query: 415 LRPLSM--EQMPPVEHSRNKLYQSILYSCGSLKSVIMAM----------------KNKEQ 456
RP++ +QM + N Q+++ ++ ++ M K +
Sbjct: 316 YRPVNRLGDQMFTNGQTVN--LQAVMKDAVLIRKLLALMAQEQKLPCEMTELTIDKENDS 373
Query: 457 SDLLSEALKGIR-GDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDG 515
S + + G+ G +L +KL N W LQ +V+++ D++++ + G++Q+L+
Sbjct: 374 SVAIDRSFLGLLPGPSLTDKLYNIWIRLQSHVNIVFDSEMD---KLMLEKYPGIRQILEK 430
Query: 516 KTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKM 575
K G+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+
Sbjct: 431 KEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQA 490
Query: 576 VINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
VINGPNV+PGA+M+ NEDGS +S+ A QRE++AK+L+TP
Sbjct: 491 VINGPNVHPGASMVINEDGSRTALSAVDAAQREAVAKQLLTP 532
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 67/87 (77%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 446 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 505
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +S+ A QRE++AK+L+TP
Sbjct: 506 NEDGSRTALSAVDAAQREAVAKQLLTP 532
>gi|325179800|emb|CCA14203.1| DNAdirected RNA polymerase I subunit RPA1 putative [Albugo
laibachii Nc14]
Length = 1800
Score = 268 bits (684), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 182/555 (32%), Positives = 285/555 (51%), Gaps = 61/555 (10%)
Query: 111 EKIITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISER 170
++ I R E P+ ++ Y+D E++QLSV ++ S +TF++L + + GGLYD A+GPI +
Sbjct: 6 DQTIIRHE--PKTVQFGIYSDHEIRQLSVKEIVSQVTFDALNNAVVGGLYDPALGPI-DY 62
Query: 171 GDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLF 230
C TC +C GH+GHIELPVPV N + F + +LK CF CHK+ + + ++
Sbjct: 63 NRICPTCHQTQKECPGHMGHIELPVPVYNPVLFPKLLTILKRKCFNCHKLRVDCSKSRVY 122
Query: 231 INQIKLLDAGYVTQAKDLEETLFNEENLRLH-PAQLV---QLVDSHVQSILAHGTKICDI 286
+I L D G V + L E L + + P Q++ Q + + A K+
Sbjct: 123 RVKIMLYDCGLVEEVATLTELLEQRDGIEDEAPNQIIKRQQAILDEYERFAATNRKLFSR 182
Query: 287 NDYKGGEELRSAFVAQVLSRHVKRKCIFCA--TP-----------INAISYQQRK--IIK 331
+ + R VAQVL + K+KC C TP I ++S + R+ K
Sbjct: 183 TRSRTVQVERERLVAQVL-KTTKQKCENCGAITPSIRQDSNAKIFIKSLSARSRRNNRQK 241
Query: 332 SFKIDK--DNLDQSL-----------------DKSLNKSSNQIIRKRE-----QGYVMAS 367
+ KI D + Q+L D +L +++ R+R ++
Sbjct: 242 NLKIGAAVDQVTQTLTSKSKEQYEDESDLSSEDSTLEMDLSEVARQRNSIVANHTFLPPL 301
Query: 368 EVEADFKKLWTNEHLFLK-CL---IPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQM 423
EV++ + LW +E ++ C + + F+ + V P+ RP
Sbjct: 302 EVQSQLQLLWKHETGLMELCFGENTAAISGKPRMDGWQSFFLHVIPVTPSRFRPPVFLGD 361
Query: 424 PPVEHSRNKLYQSILYSCGSLKSVIMAMKNK-EQSDLLSEALKGIRGDT-LNNKLQNSWH 481
EH++N I+ L I+ NK + L+++++ GD L KL + W
Sbjct: 362 DQFEHAQNTYLSKII----QLSQAIVQKTNKVGKESGLADSVEDSSGDVDLFQKL-SLWT 416
Query: 482 ELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDP 541
ELQ NV+ L+D+ G G++Q+++ K G+ R+NMMGKRVN+A RSVI+PDP
Sbjct: 417 ELQVNVNSLVDS---TKARPGQDTPQGIRQLIEKKEGLFRKNMMGKRVNYAARSVISPDP 473
Query: 542 YLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISS 601
Y++ IGVPL FAKTLTYP PVTPWN+ LR++VINGP V+PGAN ++NE G ++ +S
Sbjct: 474 YISTSQIGVPLRFAKTLTYPQPVTPWNIEQLRELVINGPEVHPGANFVENEMGRLIDLSK 533
Query: 602 SQAVQRESLAKRLIT 616
QR +++K L+T
Sbjct: 534 RSPHQRFAISKTLLT 548
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 65/86 (75%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDPY++ IGVPL FAKTLTYP PVTPWN+ LR++VINGP V+PGAN ++
Sbjct: 463 YAARSVISPDPYISTSQIGVPLRFAKTLTYPQPVTPWNIEQLRELVINGPEVHPGANFVE 522
Query: 74 NEDGSVVRISSSQAVQRESLAKRLIT 99
NE G ++ +S QR +++K L+T
Sbjct: 523 NEMGRLIDLSKRSPHQRFAISKTLLT 548
>gi|327275261|ref|XP_003222392.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Anolis
carolinensis]
Length = 1690
Score = 266 bits (681), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 178/523 (34%), Positives = 274/523 (52%), Gaps = 54/523 (10%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
L Y +E+++LS+ + +P+ ++ G P GLYDL++GP+ + + C TC ++
Sbjct: 14 LSFGMYAAEEIRKLSMKSITNPVFLDNAGTPSPNGLYDLSLGPLDNK-EVCATCMQDFNS 72
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVT 243
C GH+GHIELP+ V N LFF + LL++ SC C + P L NQ+KLL+ G +
Sbjct: 73 CPGHLGHIELPLTVYNPLFFDKLFLLIRGSCLNCCHLTCPRAVIHLLFNQLKLLEVGLLQ 132
Query: 244 QAKDLEETL--FNEEN--------LRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGE 293
A DLE L F EEN LRLH +++ H G + + +Y
Sbjct: 133 AAHDLEAVLSRFLEENRDGDIEEALRLHVEEVL-----HNNQFRDQGAPVKTVCEY---- 183
Query: 294 ELRSAFVAQVL-SRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSS 352
RS ++Q S+ +KC C + + + K+ N + KS K+
Sbjct: 184 --RSKLISQFWKSQMSSKKCPNCKAGRSLVRKEHNS-----KLTVTNSTIVIQKSGKKT- 235
Query: 353 NQIIRKRE--QGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKEL-IATDIMFIRSLV 409
I+ + +GY+ + + LW N+ L L + + D+ F+ LV
Sbjct: 236 --IVEEAASIRGYLTPLTAKHHVEALWKNDGFLLYKLFSGMTIAGDSSFNPDMFFLDQLV 293
Query: 410 VPPNNLRPLSM--EQMPPVEHSRNKLYQSILYSCGSLKSV--IMAMKNKEQSDL------ 459
VPP RP+S +QM + N Q+++ + V I+A ++ + DL
Sbjct: 294 VPPARYRPVSCVGDQMFANGQTVN--LQAVMKDAQLTRKVLAIIAQEDSQMEDLKMVTEQ 351
Query: 460 LSEAL-----KGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLD 514
SE L + I G T+ +KL N W LQ V+++ D+ ++ T + G++Q L+
Sbjct: 352 ASEPLDRSFLQTIPGQTVADKLYNIWIRLQSRVNIVFDSDMDKVIT---EKYPGVRQFLE 408
Query: 515 GKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRK 574
K G+ R++MMGKRV++A RSVI PD Y+ + IG+P+ FA LTYP PVTPWNV LR+
Sbjct: 409 KKDGLFRKHMMGKRVDYAARSVICPDMYIRTNEIGIPMVFATKLTYPQPVTPWNVQELRQ 468
Query: 575 MVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
VINGPN +PGA+MI NEDGS +S++ QRE++AK+L+TP
Sbjct: 469 AVINGPNQHPGASMIINEDGSRTILSAANETQREAIAKQLLTP 511
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 65/87 (74%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+ + IG+P+ FA LTYP PVTPWNV LR+ VINGPN +PGA+MI
Sbjct: 425 YAARSVICPDMYIRTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNQHPGASMII 484
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +S++ QRE++AK+L+TP
Sbjct: 485 NEDGSRTILSAANETQREAIAKQLLTP 511
>gi|26352734|dbj|BAC39997.1| unnamed protein product [Mus musculus]
Length = 1012
Score = 264 bits (675), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 169/517 (32%), Positives = 274/517 (52%), Gaps = 42/517 (8%)
Query: 134 VKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIEL 193
K+LSV + +P + LG+ GLYDLA+GP + + C TC ++ C GH+GHI+L
Sbjct: 47 TKKLSVKSITNPRYVDYLGNPSANGLYDLALGPADSK-EVCATCVQDFNNCSGHLGHIDL 105
Query: 194 PVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE--T 251
P+ V N F + LLL+ SC CH + P + L I+Q+++L+ G + +LE +
Sbjct: 106 PLTVYNPFLFDKLYLLLRGSCLSCHMLTCPRAAIYLLISQLRVLEVGALQAVYELERILS 165
Query: 252 LFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRK 311
+F EE ++ + ++ + IL + K E RS VAQ H+ K
Sbjct: 166 MFLEETGDPSAFEIQEELEEYTSKILQNNLLGSQGTHVKNVCESRSKLVAQFWKTHMAAK 225
Query: 312 -CIFCATPINAISYQQ-RKIIKSF------KIDKDN--LDQSLDKSLNKSSNQIIRKREQ 361
C C T + + + K+I ++ K D++ L + + ++ Q+ ++
Sbjct: 226 QCPHCKTGRSVVRKEHNSKLIITYPATVHKKSDQEGTELPEGVPEAPGIDKAQMGKR--- 282
Query: 362 GYVMASEVEADFKKLWTNEHLFLKCLIPVLDTT--KELIATDIMFIRSLVVPPNNLRPLS 419
GY+ S + +W NE FL L LD + + F+ +VVPP+ RP++
Sbjct: 283 GYLTPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGPESSFNPSMFFLDFIVVPPSRYRPVN 342
Query: 420 M--EQMPPVEHSRNKLYQSILYSCGSLKSVIMAM----------------KNKEQSDLLS 461
+QM + N Q+++ ++ ++ M K + S +
Sbjct: 343 RLGDQMFTNGQTVN--LQAVMKDAVLIRKLLALMAQEQKLPCEMTELTIDKENDSSVAID 400
Query: 462 EALKGIR-GDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMI 520
+ G+ G +L +KL N W LQ +V+++ D++++ + G++Q+L+ K G+
Sbjct: 401 RSFLGLLPGPSLTDKLYNIWIRLQSHVNIVFDSEMD---KLMLEKYPGIRQILEKKEGLF 457
Query: 521 RQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGP 580
R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGP
Sbjct: 458 RKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGP 517
Query: 581 NVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
NV+PGA+M+ NEDGS +SS A QRE++AK+L+TP
Sbjct: 518 NVHPGASMVINEDGSRTALSSVDAAQREAVAKQLLTP 554
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 67/87 (77%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 468 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 527
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +SS A QRE++AK+L+TP
Sbjct: 528 NEDGSRTALSSVDAAQREAVAKQLLTP 554
>gi|344302025|gb|EGW32330.1| DNA-directed RNA polymerase I 190 kDa polypeptide [Spathaspora
passalidarum NRRL Y-27907]
Length = 1639
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 177/532 (33%), Positives = 279/532 (52%), Gaps = 61/532 (11%)
Query: 130 TDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+D E+K+LS ++ +P F++LGH I GLYDLA+G + CTTCG + C GH+G
Sbjct: 20 SDNEIKRLSAKQITNPTVFDNLGHPINSGLYDLALGAFLR--NVCTTCGLDEKFCPGHMG 77
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLE 249
HIELPVPV N LFF + +LL+ SC CHK + A + +++L+ G + + DLE
Sbjct: 78 HIELPVPVYNPLFFNQLYILLRASCLYCHKFKLNALEVHKYQCKLRLIQYGLLLECVDLE 137
Query: 250 ETLFNEENLRLHPAQLVQ-----------------------LVDSHVQSILAHG-TKICD 285
N+ AQ ++ V++ + L+ G T
Sbjct: 138 -------NMLAKGAQEIEDDDDDNDTLDQKTKQELMERRELFVNTAIAKALSEGRTSERG 190
Query: 286 INDYKGGEELRSA---FVAQVLSRHVKRKCIFCA--TPI-----------NAISYQQRKI 329
+ GEE + F ++LSR KC C +P NA++ +Q
Sbjct: 191 VVTATVGEERKDTIHDFYKRLLSRP---KCDNCGMYSPTFRKDGFTKIFENALTDKQVSN 247
Query: 330 IKSFKIDKDNLDQSLDKSLNKSSNQ----IIRKREQGYVMASEVEADFKKLWTNEHLFLK 385
+ + + ++ ++ + N SS I K YV++SE+ + ++TNE ++
Sbjct: 248 NRVKGLQRPDMIRNTKGNSNTSSGDNLPNIRHKGGSKYVLSSEIRNIIRAVFTNEQPIIQ 307
Query: 386 CLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLK 445
+ KE++ DI F + ++VPP R S E+S+N+L +IL +
Sbjct: 308 KVFHSRPYQKEIVKGDIFFRQCILVPPTRFRLPSKLGDEIHENSQNELLSNILKT----- 362
Query: 446 SVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQ 505
S+++ N + S++ E L G + + N+L N++ +Q +V+ +D+ N N G
Sbjct: 363 SLLIRDLNDQISNMYQEKLSGEQKKIIFNRLMNAFVTIQNDVNAFIDSTKNQNAPAGKVP 422
Query: 506 IDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVT 565
G+KQ L+ K G+ R++MMGKRVN+A RSVI+PDP L + IGVP FAK LTYP PVT
Sbjct: 423 NPGIKQALEKKEGLFRKHMMGKRVNYAARSVISPDPNLETNEIGVPPVFAKKLTYPEPVT 482
Query: 566 PWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
+N + LR+ VINGP+ +PGA +QNEDGS+V + QR+++A +L+TP
Sbjct: 483 SYNASELRQAVINGPDKWPGAVQVQNEDGSLVSLIGMSLEQRKAIANQLLTP 534
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 63/89 (70%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP L + IGVP FAK LTYP PVT +N + LR+ VINGP+ +PGA +Q
Sbjct: 448 YAARSVISPDPNLETNEIGVPPVFAKKLTYPEPVTSYNASELRQAVINGPDKWPGAVQVQ 507
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPED 102
NEDGS+V + QR+++A +L+TP +
Sbjct: 508 NEDGSLVSLIGMSLEQRKAIANQLLTPSN 536
>gi|351705321|gb|EHB08240.1| DNA-directed RNA polymerase I subunit RPA1 [Heterocephalus glaber]
Length = 1715
Score = 263 bits (672), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 171/524 (32%), Positives = 279/524 (53%), Gaps = 53/524 (10%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P +SLG+ GLYDLA+GP + + C+TC ++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSK-EVCSTCVQDFNNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELP+ V N L F + LLL+ SC CH + P L + Q+K+L+ G + +L
Sbjct: 79 GHIELPLTVYNPLLFEKLYLLLRGSCLNCHMLTCPRAVIHLLVCQLKVLEVGALQAVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSIL---------AHGTKICDINDYKGGEELRS 297
E+ L F EEN ++ + ++ +V I+ AH +C E RS
Sbjct: 139 EQILTRFLEENGDPSGFEIQEELEQYVAKIVQNNFLGAQGAHVKNVC---------ESRS 189
Query: 298 AFVAQVLSRHV-KRKCIFCATPINAI--SYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQ 354
+A H+ ++C C T + + + + + + DQ + + L Q
Sbjct: 190 KLIAYFWKAHMTAKRCPHCKTGRSVVRKEHNSKLTVTYPAVVHKKSDQKITEPLGIEEAQ 249
Query: 355 IIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTT--KELIATDIMFIRSLVVPP 412
+ ++ GY+ S + +W NE FL L LD + + F+ +VVPP
Sbjct: 250 MGKR---GYLTPSSAQEHLGAIWKNEGFFLNYLFLGLDDVGMESRFNPSVFFLDFIVVPP 306
Query: 413 NNLRPLSM--EQMPPVEHSRNKLYQSILYSCGSLKSVIMAM----------------KNK 454
+ RP++ +QM + N Q+++ ++ ++ M + K
Sbjct: 307 SRYRPVNRLGDQMFTNGQTVN--LQAVMKDIVLIRKLLALMAQEQKLPINVAALATDEEK 364
Query: 455 EQSDLLSEA-LKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQML 513
+ S ++ + L + G +L +KL N W LQ +V+++ D++++ + G++Q+L
Sbjct: 365 DSSVVMDRSFLSMLPGQSLTDKLYNIWIRLQSHVNIVFDSEMD---KLMMEKFPGIRQIL 421
Query: 514 DGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLR 573
+ K G+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR
Sbjct: 422 EKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELR 481
Query: 574 KMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
+ VINGPNV+PGA+M+ NEDGS +S+ QRE++AK+L+TP
Sbjct: 482 QAVINGPNVHPGASMVINEDGSRTALSAVDVAQREAVAKQLLTP 525
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 66/87 (75%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 439 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 498
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +S+ QRE++AK+L+TP
Sbjct: 499 NEDGSRTALSAVDVAQREAVAKQLLTP 525
>gi|334313345|ref|XP_003339889.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I
subunit RPA1-like [Monodelphis domestica]
Length = 1831
Score = 261 bits (666), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 172/528 (32%), Positives = 278/528 (52%), Gaps = 47/528 (8%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ E+++LSV + +P +++G+ GLYDL++GP + + C+TC ++ C GH+
Sbjct: 20 YSADELRKLSVKSITNPQYMDNVGNPSVNGLYDLSLGPADSK-EACSTCVQDFGSCPGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELP+ V N LFF + LL++ SC CH + P L Q+++L+ G + +L
Sbjct: 79 GHIELPLIVYNPLFFDKLYLLIRGSCLNCHLLTCPRPVVHLLYCQLRVLEVGALQGVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSR 306
E TL F EEN ++ ++ H ++IL + + K E +S +AQ
Sbjct: 139 ETTLNRFQEENPDASIYEIQGELEQHTRAILENNLLGAQGSQVKNVCESKSKLIAQFWKT 198
Query: 307 HV-KRKCIFCATPINAISYQQRK---------IIKSFKIDKDNLDQSLDKSLNKSS---N 353
H+ ++C C T + + + + + K ++D ++ K +S +
Sbjct: 199 HMASKRCPHCKTGKSVVRKEHNSKLTVTYPAVVHRKAKGEEDKAKKAAGKMAPDASEIDD 258
Query: 354 QIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLD--TTKELIATDIMFIRSLVVP 411
+ KR GY+ S LW NE FL L L+ K +I F+ +VVP
Sbjct: 259 AYLGKR--GYLTPSTAREHVLALWKNEGFFLNYLFSGLEDPGVKSKFNPNIFFLDLVVVP 316
Query: 412 PNNLRPLSM--EQMPPVEHSRNKLYQSILYSC-----------------GSLKS--VIMA 450
P+ RP++ +QM + + Q++L G + S V+M
Sbjct: 317 PSRYRPVNRLGDQM--FTNGQTVNLQAVLKDVVLIRKLLALMAQEQVLPGPVASLTVLMF 374
Query: 451 MKNKEQSDLLSEA-LKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGL 509
+ E S + + L + G +L KL W LQ +V+++ D+ ++ + G+
Sbjct: 375 PQELEASVPMDRSFLAMLPGQSLTEKLYGIWIRLQSHVNIVFDSDMD---KLMMEKYPGI 431
Query: 510 KQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNV 569
+Q+L+ K G+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV
Sbjct: 432 RQILEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNV 491
Query: 570 TLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
LR+ VINGPNV+PGA+M+ NEDGS +S++ QRE++AK+L+TP
Sbjct: 492 QELRQAVINGPNVHPGASMVINEDGSRTALSATDVTQREAVAKQLLTP 539
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 67/87 (77%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 453 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 512
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +S++ QRE++AK+L+TP
Sbjct: 513 NEDGSRTALSATDVTQREAVAKQLLTP 539
>gi|448509658|ref|XP_003866188.1| Rpa190 RNA polymerase I subunit A190 [Candida orthopsilosis Co
90-125]
gi|380350526|emb|CCG20748.1| Rpa190 RNA polymerase I subunit A190 [Candida orthopsilosis Co
90-125]
Length = 1651
Score = 261 bits (666), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 177/531 (33%), Positives = 280/531 (52%), Gaps = 50/531 (9%)
Query: 130 TDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+D EV++LS ++ +PI F++LGH + GGLYDL++G + CTTCG + C GH+G
Sbjct: 20 SDSEVQKLSSKQITNPIVFDNLGHPVNGGLYDLSLGAFLR--NVCTTCGLDEKFCPGHMG 77
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLE 249
HIELPVPV N +FF + + L+ SC CH + LF +++L+ G + + +LE
Sbjct: 78 HIELPVPVYNPMFFNQLYIFLRSSCLYCHHFKLSHLEVHLFKCKLQLIQYGLLLECTELE 137
Query: 250 ---------ETLFNEENLRLHPAQLVQ------------LVDSHVQSILAHG-TKICDIN 287
+ + N++ A + + V + + + L G T +
Sbjct: 138 NIMPAGKSAKEMSNDDEEEEEGASVDEKTKKKLMETRERFVKNAISAALKDGRTSAKGVI 197
Query: 288 DYKGGEELRSAFVAQVLSRHVKR-KCIFCATPINAISYQQRKIIKSFKI---DK---DNL 340
GEE R A + R + R KC C + + S+++ K F+ DK +N
Sbjct: 198 TASVGEE-RKATIHDFYRRLLSRPKCSNCG--MYSPSFRKDGFTKIFENSLNDKQITNNR 254
Query: 341 DQSLDK--------SLNKSSNQIIRKREQG---YVMASEVEADFKKLWTNEHLFLKCLIP 389
+ L + S N +++ I + +G YV++SEV + ++ NE L+ +
Sbjct: 255 VRGLQRPDMIRKNGSSNSTASDIPNIKHKGGSKYVLSSEVRNIIRAVFKNEQAVLQKVFH 314
Query: 390 VLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIM 449
+E ++ DI F +S++VPP R S E+++N+L +IL + +V++
Sbjct: 315 SRPHQREYVSGDIFFKQSILVPPTRFRLPSKLGDEIHENAQNELLSNILKT-----TVLI 369
Query: 450 AMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGL 509
A N + S + L G + N+L NS+ LQ +V+ +D+ N N G G+
Sbjct: 370 ADLNTQISQMYEAKLSGEQKKIAFNRLMNSFVTLQNDVNAFIDSTKNQNAPAGKVPNPGI 429
Query: 510 KQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNV 569
KQ L+ K G+ R++MMGKRVN+A RSVI+PDP L + IGVP FA+ LTYP PVT N
Sbjct: 430 KQALEKKEGLFRKHMMGKRVNYAARSVISPDPNLETNEIGVPPVFARKLTYPEPVTSHNA 489
Query: 570 TLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPEGN 620
LR+ +INGP +PGA IQNEDGS++ + QR++LA +L+TP G+
Sbjct: 490 AELRQAIINGPEKWPGAVQIQNEDGSLISLIGMGLEQRKALANQLLTPTGS 540
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 59/87 (67%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP L + IGVP FA+ LTYP PVT N LR+ +INGP +PGA IQ
Sbjct: 451 YAARSVISPDPNLETNEIGVPPVFARKLTYPEPVTSHNAAELRQAIINGPEKWPGAVQIQ 510
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS++ + QR++LA +L+TP
Sbjct: 511 NEDGSLISLIGMGLEQRKALANQLLTP 537
>gi|449665133|ref|XP_002164942.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Hydra
magnipapillata]
Length = 1698
Score = 260 bits (664), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 181/570 (31%), Positives = 288/570 (50%), Gaps = 92/570 (16%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHI 191
+E+++L++ K+ +P TF+ L H GGLYDLA+GP +E+ D C TC + KC GH G+I
Sbjct: 17 EEIRKLAIKKIDNPETFDLLRHPNKGGLYDLALGP-NEKDDICDTCSLGHIKCPGHFGYI 75
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEET 251
ELP+PV + +FF+ + +L+ SCF CH++ + LFI Q LL+ G++++A L E
Sbjct: 76 ELPLPVYHPMFFKLMISILRGSCFNCHRLVQKSCQLKLFIRQCNLLEKGFLSEAAALNE- 134
Query: 252 LFN----EENLRLHPAQLVQL-----VDSHVQSILAHG---TKICDINDYKGGEELRSAF 299
L++ E + VQ+ ++S+ +S++ + + N + ++L F
Sbjct: 135 LYDYYTAEARANISSDSNVQMMVCSKIESYYESVVNNSPSEQRSSTKNLLQYRQDLLKKF 194
Query: 300 VAQVLSRHVKRKCIFCATPINAI-----------SYQQRKI-------------IKSFKI 335
+ VL + VK +C C I S Q+ I IK KI
Sbjct: 195 IKSVLLKKVK-ECPHCTMIKRDIRSEYNIRLYFSSASQKSIQKAIHDLKNLKPEIKPSKI 253
Query: 336 ------------------DKDNLDQSL-DKSLNKSSNQIIRKRE---------------- 360
D+D+ L ++ NKS N I K
Sbjct: 254 EDNFPDEEDEEEQNNDDFDEDDYCPKLQNRKKNKSGNSSIVKENFKENEDRYNEYKKLGL 313
Query: 361 QGYVMASEVEADFKKLWTNEHLFLKCLIPVLDT---TKELIATDIMFIRSLVVPPNNLRP 417
+ Y+ EV+ +LW E+ L L ++ + ++ F+ + VPP+ RP
Sbjct: 314 EEYITPEEVKKHLIELWNTEYSVLNALFGSFNSPSCQSRQTSPEMFFLDVIAVPPSKFRP 373
Query: 418 LSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMK----NKE-------QSDLLSEALKG 466
+S E+ + IL++C + ++ +K +K + + K
Sbjct: 374 MSYRDEKKFENPETENMCKILWNCKFIHELLNRLKLPTDDKPYVPVAFVSTSVSQSKRKV 433
Query: 467 IRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMG 526
I G + +LQN+W ELQ +V+ LMD LN I G++Q+L+ K G+ R+NMMG
Sbjct: 434 IPGSSHKEQLQNAWEELQSSVNTLMDNTLN---KLDNKNIPGIRQLLEKKEGLFRKNMMG 490
Query: 527 KRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGA 586
KRVNFA RSVI+PDP++N+D +G+PL FAK LTY PVT WN++ L++MVINGPN +PGA
Sbjct: 491 KRVNFACRSVISPDPFINMDEVGIPLVFAKKLTYVQPVTTWNLSKLKQMVINGPNKWPGA 550
Query: 587 NMIQNEDGSVVRISSSQAVQRESLAKRLIT 616
M++ EDG I S +R ++AK+L++
Sbjct: 551 TMVEYEDGRKT-ILSDDEYERRAVAKQLLS 579
Score = 102 bits (253), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 47/99 (47%), Positives = 69/99 (69%), Gaps = 1/99 (1%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP++N+D +G+PL FAK LTY PVT WN++ L++MVINGPN +PGA M++
Sbjct: 495 FACRSVISPDPFINMDEVGIPLVFAKKLTYVQPVTTWNLSKLKQMVINGPNKWPGATMVE 554
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEK 112
EDG I S +R ++AK+L++ + + I + K
Sbjct: 555 YEDGRKT-ILSDDEYERRAVAKQLLSSSHENNLKIGRTK 592
>gi|291386401|ref|XP_002709703.1| PREDICTED: DNA-directed RNA polymerase I A isoform 1 [Oryctolagus
cuniculus]
Length = 1713
Score = 260 bits (664), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 175/526 (33%), Positives = 279/526 (53%), Gaps = 57/526 (10%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P +SLG+ GLYDLA+GP + + C TC ++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYVDSLGNPSANGLYDLALGPADSK-EVCATCVQDFNNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELP+ V N L F + LLL+ SC CH + P L Q+++L+ G + +L
Sbjct: 79 GHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLFCQLRVLEVGALQAVFEL 138
Query: 249 EETL--FNEEN-----------LRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEEL 295
E L F EEN L + A++VQ ++ + S AH +C E
Sbjct: 139 ERILNRFLEENADPSAFEIQEELEKYTAEIVQ--NNLLGSQGAHVKNVC---------ES 187
Query: 296 RSAFVAQVLSRHV-KRKCIFCATPINAI--SYQQRKIIKSFKIDKDNLDQSLDKSLNKSS 352
RS +A H+ ++C C T + + + + I I Q +SL
Sbjct: 188 RSKLIAYFWKTHMTAKRCPHCKTGRSVVRKEHNSKLTITYPAIVHKKAGQQDSESLGIEE 247
Query: 353 NQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDT--TKELIATDIMFIRSLVV 410
+Q+ ++ GY+ + +W NE FL L LD T+ + F+ +VV
Sbjct: 248 SQMGKR---GYLTPNSAREHLFAIWKNEGFFLNYLFSGLDDVGTESGFNPAVFFLDFMVV 304
Query: 411 PPNNLRPLSM--EQMPPVEHSRNKLYQSILYSCGSLKSVIMAM----------------K 452
PP+ RP++ +QM + N Q+++ ++ ++ M +
Sbjct: 305 PPSRYRPVNRLGDQMFTNGQTVN--LQAVMKDVVLIRKLLALMAQEQKLPCEVALPVTEE 362
Query: 453 NKEQSDLLSEA-LKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQ 511
+K+ S + + L + G +L +KL N W LQ +V+++ D++++ + G++Q
Sbjct: 363 DKDTSVAVDRSFLSALPGQSLTDKLYNIWIRLQSHVNIVFDSEMD---KLMMEKYPGIRQ 419
Query: 512 MLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTL 571
+L+ K G+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV
Sbjct: 420 ILEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQE 479
Query: 572 LRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
LR+ VINGPNV+PGA+M+ NEDGS +S++ QRE++AK+L+TP
Sbjct: 480 LRQAVINGPNVHPGASMVINEDGSRTALSATDVTQREAVAKQLLTP 525
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 67/87 (77%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 439 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 498
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +S++ QRE++AK+L+TP
Sbjct: 499 NEDGSRTALSATDVTQREAVAKQLLTP 525
>gi|196008945|ref|XP_002114338.1| hypothetical protein TRIADDRAFT_27970 [Trichoplax adhaerens]
gi|190583357|gb|EDV23428.1| hypothetical protein TRIADDRAFT_27970 [Trichoplax adhaerens]
Length = 1724
Score = 260 bits (664), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 173/532 (32%), Positives = 271/532 (50%), Gaps = 40/532 (7%)
Query: 121 PEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNN 180
P ++ YT +++++LSV ++ + TF+ L + GGL D A+GPI E PC+TCG
Sbjct: 14 PLAVRFSTYTSEDIRKLSVKQITNVHTFDRLMNANHGGLCDPALGPI-ETLSPCSTCGQI 72
Query: 181 YTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAG 240
C GH GHI+L +PV + LFF+ + +LLK CF CH ++ + LF+ Q+KLL+ G
Sbjct: 73 MDYCPGHFGHIDLHLPVYHPLFFKHMLMLLKGMCFQCHHLHGTPAALNLFVCQLKLLEYG 132
Query: 241 YVTQAKDLEE-------TLFNEENLRLHPAQ--LVQLVDSHVQSILAH-----GTKICDI 286
+T+ +L + TL + E++ Q ++ +++ VQ LA+
Sbjct: 133 LLTKCYELPDIADAVANTLSSSEDMSFQQIQKGIIHAINAEVQHALANIPLQDKKNTSKW 192
Query: 287 NDYKGGEELRSAFVAQVLS---RHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQS 343
K + R + Q H +KC C P + I Q K+ +S
Sbjct: 193 TYSKNVTQCRKLILHQFFHYCISHGSKKCNRCKGPPHIIRAQHHA-----KVFYKQRVKS 247
Query: 344 LDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLD--TTKELIATD 401
+D+ N Q Y+ EV ++LW NE L + + T+ IA +
Sbjct: 248 IDQGKNTEMESEYSLARQKYMHPIEVRYHLRQLWKNEKRILTLVFGTFNKLTSNRRIANE 307
Query: 402 IMFIRSLV-VPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLL 460
F ++ VPP RP+S E + IL ++ +I +K +E ++
Sbjct: 308 NSFFLDVIPVPPTRFRPVSTLGDSRFESPQTTNLNKILEDNVVVEDLIDNLKQEENKNVN 367
Query: 461 SEALK-----------GIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGL 509
+K I G T +L N+W LQ +V+ +D+ L+ + + G+
Sbjct: 368 DHDVKVKSYYFGGRSIKIAGSTPTARLHNAWLRLQTHVNCFVDSDLD---KLSSDKAPGI 424
Query: 510 KQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNV 569
KQ+L+ K G++R++MMGKRVNFA RSVI+PD +N D +GVP FA LTY PVTP+NV
Sbjct: 425 KQILEKKEGLLRKHMMGKRVNFAARSVISPDLSINCDEVGVPEVFATKLTYCQPVTPFNV 484
Query: 570 TLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPEGNY 621
LR VINGPN +PGA +I+ EDG++ +IS QR++LAK+L+TP ++
Sbjct: 485 RQLRNAVINGPNKHPGATLIEFEDGNIKKISQHSFNQRQALAKQLLTPNTSH 536
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 62/87 (71%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PD +N D +GVP FA LTY PVTP+NV LR VINGPN +PGA +I+
Sbjct: 446 FAARSVISPDLSINCDEVGVPEVFATKLTYCQPVTPFNVRQLRNAVINGPNKHPGATLIE 505
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
EDG++ +IS QR++LAK+L+TP
Sbjct: 506 FEDGNIKKISQHSFNQRQALAKQLLTP 532
>gi|397491322|ref|XP_003816616.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Pan
paniscus]
Length = 1720
Score = 260 bits (664), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 172/524 (32%), Positives = 278/524 (53%), Gaps = 53/524 (10%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P +SLG+ GLYDLA+GP + + C+TC +++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSK-EVCSTCVQDFSNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELP+ V N L F + LLL+ SC CH + P L + Q+++L+ G + +L
Sbjct: 79 GHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSIL---------AHGTKICDINDYKGGEELRS 297
E L F EEN +++ + ++ + I+ AH +C E RS
Sbjct: 139 ERILNRFLEENADPSASEIREELEQYTTEIVQNNLLGSQGAHVKNVC---------ESRS 189
Query: 298 AFVAQVLSRHV-KRKCIFCATPINAISYQQR-KIIKSF-KIDKDNLDQSLDKSLNKSSNQ 354
+A H+ ++C C T + + + K+ +F + Q + L Q
Sbjct: 190 KLIALFWKAHMNAKRCPHCKTGRSIVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQ 249
Query: 355 IIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDT--TKELIATDIMFIRSLVVPP 412
I ++ GY+ + LW NE FL L +D + + F+ LVVPP
Sbjct: 250 IGKR---GYLTPTSAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPP 306
Query: 413 NNLRPLSM--EQMPPVEHSRNKLYQSILYSCGSLKSVIMAMK--------------NKEQ 456
+ RP+S +QM + N Q+++ ++ ++ M ++E+
Sbjct: 307 SRYRPVSRLGDQMFTNGQTVN--LQAVMKDVVLIRKLLALMAQEQNLPEEVATPTTDEEK 364
Query: 457 SDLLS---EALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQML 513
L++ L + G +L +KL N W LQ +V+++ D++++ + G++Q+L
Sbjct: 365 DSLIAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMD---KLMMDKYPGIRQIL 421
Query: 514 DGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLR 573
+ K G+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR
Sbjct: 422 EKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELR 481
Query: 574 KMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
+ VINGPNV+PGA+M+ NEDGS +S+ QRE++AK+L+TP
Sbjct: 482 QAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTP 525
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 66/87 (75%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 439 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 498
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +S+ QRE++AK+L+TP
Sbjct: 499 NEDGSRTALSAVDMTQREAVAKQLLTP 525
>gi|410353619|gb|JAA43413.1| polymerase (RNA) I polypeptide A, 194kDa [Pan troglodytes]
Length = 1720
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 172/524 (32%), Positives = 278/524 (53%), Gaps = 53/524 (10%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P +SLG+ GLYDLA+GP + + C+TC +++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSK-EVCSTCVQDFSNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELP+ V N L F + LLL+ SC CH + P L + Q+++L+ G + +L
Sbjct: 79 GHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSIL---------AHGTKICDINDYKGGEELRS 297
E L F EEN +++ + ++ + I+ AH +C E RS
Sbjct: 139 ERILNRFLEENADPSASEIREELEQYTTEIVQNNLLGSQGAHVKNVC---------ESRS 189
Query: 298 AFVAQVLSRHV-KRKCIFCATPINAISYQQR-KIIKSF-KIDKDNLDQSLDKSLNKSSNQ 354
+A H+ ++C C T + + + K+ +F + Q + L Q
Sbjct: 190 KLIALFWKAHMNAKRCPHCKTGRSIVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQ 249
Query: 355 IIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDT--TKELIATDIMFIRSLVVPP 412
I ++ GY+ + LW NE FL L +D + + F+ LVVPP
Sbjct: 250 IGKR---GYLTPTSAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPP 306
Query: 413 NNLRPLSM--EQMPPVEHSRNKLYQSILYSCGSLKSVIMAMK--------------NKEQ 456
+ RP+S +QM + N Q+++ ++ ++ M ++E+
Sbjct: 307 SRYRPVSRLGDQMFTNGQTVN--LQAVMKDVVLIQKLLALMAQEQNLPEEVATPTTDEEK 364
Query: 457 SDLLS---EALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQML 513
L++ L + G +L +KL N W LQ +V+++ D++++ + G++Q+L
Sbjct: 365 DSLIAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMD---KLMMDKYPGIRQIL 421
Query: 514 DGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLR 573
+ K G+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR
Sbjct: 422 EKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELR 481
Query: 574 KMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
+ VINGPNV+PGA+M+ NEDGS +S+ QRE++AK+L+TP
Sbjct: 482 QAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTP 525
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 66/87 (75%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 439 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 498
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +S+ QRE++AK+L+TP
Sbjct: 499 NEDGSRTALSAVDMTQREAVAKQLLTP 525
>gi|410035335|ref|XP_003949878.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Pan
troglodytes]
Length = 1659
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 172/524 (32%), Positives = 278/524 (53%), Gaps = 53/524 (10%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P +SLG+ GLYDLA+GP + + C+TC +++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSK-EVCSTCVQDFSNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELP+ V N L F + LLL+ SC CH + P L + Q+++L+ G + +L
Sbjct: 79 GHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSIL---------AHGTKICDINDYKGGEELRS 297
E L F EEN +++ + ++ + I+ AH +C E RS
Sbjct: 139 ERILNRFLEENADPSASEIREELEQYTTEIVQNNLLGSQGAHVKNVC---------ESRS 189
Query: 298 AFVAQVLSRHV-KRKCIFCATPINAISYQQR-KIIKSF-KIDKDNLDQSLDKSLNKSSNQ 354
+A H+ ++C C T + + + K+ +F + Q + L Q
Sbjct: 190 KLIALFWKAHMNAKRCPHCKTGRSIVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQ 249
Query: 355 IIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDT--TKELIATDIMFIRSLVVPP 412
I ++ GY+ + LW NE FL L +D + + F+ LVVPP
Sbjct: 250 IGKR---GYLTPTSAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPP 306
Query: 413 NNLRPLSM--EQMPPVEHSRNKLYQSILYSCGSLKSVIMAMK--------------NKEQ 456
+ RP+S +QM + N Q+++ ++ ++ M ++E+
Sbjct: 307 SRYRPVSRLGDQMFTNGQTVN--LQAVMKDVVLIQKLLALMAQEQNLPEEVATPTTDEEK 364
Query: 457 SDLLS---EALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQML 513
L++ L + G +L +KL N W LQ +V+++ D++++ + G++Q+L
Sbjct: 365 DSLIAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMD---KLMMDKYPGIRQIL 421
Query: 514 DGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLR 573
+ K G+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR
Sbjct: 422 EKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELR 481
Query: 574 KMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
+ VINGPNV+PGA+M+ NEDGS +S+ QRE++AK+L+TP
Sbjct: 482 QAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTP 525
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 66/87 (75%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 439 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 498
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +S+ QRE++AK+L+TP
Sbjct: 499 NEDGSRTALSAVDMTQREAVAKQLLTP 525
>gi|348566419|ref|XP_003468999.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Cavia
porcellus]
Length = 1716
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 171/528 (32%), Positives = 276/528 (52%), Gaps = 55/528 (10%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+++LSV + +P +SLG+ GLYDLA+GP + + C+TC ++ C GH+
Sbjct: 20 YSAEELRKLSVKSITNPQYLDSLGNPSANGLYDLALGPADSK-EVCSTCVQDFNNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELP+ V N L F + LLL+ SC CH + P L + Q+++L+ G + +L
Sbjct: 79 GHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLVCQLRVLEVGALQAVYEL 138
Query: 249 EE--TLFNEENLRLHPAQLVQLVDSHVQSIL---------AHGTKICDINDYKGGEELRS 297
E T F EEN ++ + ++ + I+ AH +C E RS
Sbjct: 139 ERILTTFLEENADPSSFEIQEELEQYTTKIVQNNLLGAQGAHVKNVC---------ESRS 189
Query: 298 AFVAQVLSRHV-KRKCIFCATPINAISYQQR-KIIKSF------KIDKDNLDQSLDKSLN 349
+ H+ ++C C T + + + K+ ++ K D+ + + L K
Sbjct: 190 KLITYFWKAHMTAKRCPHCKTGRSVVRKEHNSKLTVTYPTMVHKKPDQKDTE-GLGKQPG 248
Query: 350 KSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTT--KELIATDIMFIRS 407
+ + ++GY+ S +W NE FL L LD K + F+
Sbjct: 249 APGIEEAQMGKRGYLTPSSAREHLGAIWKNEGFFLNYLFLGLDDVGMKSRFNPSVFFLDF 308
Query: 408 LVVPPNNLRPLSM--EQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALK 465
LVVPP+ RP++ +QM + N Q+++ ++ ++ M ++Q EAL
Sbjct: 309 LVVPPSRYRPVNRLGDQMFTNGQTVN--LQAVMKDIVLIRKLLALMAQEQQLPTDVEALT 366
Query: 466 G----------------IRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGL 509
+ G +L +KL N W LQ +V+++ D++++ + G+
Sbjct: 367 DEQKDPLVAVDRSFLSMLPGQSLTDKLYNIWIRLQSHVNIVFDSEMD---KLMMEKFPGI 423
Query: 510 KQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNV 569
+Q+L+ K G+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV
Sbjct: 424 RQILEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNV 483
Query: 570 TLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
LR+ VINGPNV+PGA+M+ NEDGS +S+ QRE++AK+L+TP
Sbjct: 484 QELRQAVINGPNVHPGASMVINEDGSRTALSTGDIAQREAVAKQLLTP 531
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 66/87 (75%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 445 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 504
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +S+ QRE++AK+L+TP
Sbjct: 505 NEDGSRTALSTGDIAQREAVAKQLLTP 531
>gi|332813686|ref|XP_001135380.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 isoform 3
[Pan troglodytes]
Length = 1720
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 172/524 (32%), Positives = 278/524 (53%), Gaps = 53/524 (10%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P +SLG+ GLYDLA+GP + + C+TC +++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSK-EVCSTCVQDFSNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELP+ V N L F + LLL+ SC CH + P L + Q+++L+ G + +L
Sbjct: 79 GHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSIL---------AHGTKICDINDYKGGEELRS 297
E L F EEN +++ + ++ + I+ AH +C E RS
Sbjct: 139 ERILNRFLEENADPSASEIREELEQYTTEIVQNNLLGSQGAHVKNVC---------ESRS 189
Query: 298 AFVAQVLSRHV-KRKCIFCATPINAISYQQR-KIIKSF-KIDKDNLDQSLDKSLNKSSNQ 354
+A H+ ++C C T + + + K+ +F + Q + L Q
Sbjct: 190 KLIALFWKAHMNAKRCPHCKTGRSIVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQ 249
Query: 355 IIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDT--TKELIATDIMFIRSLVVPP 412
I ++ GY+ + LW NE FL L +D + + F+ LVVPP
Sbjct: 250 IGKR---GYLTPTSAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPP 306
Query: 413 NNLRPLSM--EQMPPVEHSRNKLYQSILYSCGSLKSVIMAMK--------------NKEQ 456
+ RP+S +QM + N Q+++ ++ ++ M ++E+
Sbjct: 307 SRYRPVSRLGDQMFTNGQTVN--LQAVMKDVVLIQKLLALMAQEQNLPEEVATPTTDEEK 364
Query: 457 SDLLS---EALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQML 513
L++ L + G +L +KL N W LQ +V+++ D++++ + G++Q+L
Sbjct: 365 DSLIAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMD---KLMMDKYPGIRQIL 421
Query: 514 DGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLR 573
+ K G+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR
Sbjct: 422 EKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELR 481
Query: 574 KMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
+ VINGPNV+PGA+M+ NEDGS +S+ QRE++AK+L+TP
Sbjct: 482 QAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTP 525
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 66/87 (75%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 439 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 498
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +S+ QRE++AK+L+TP
Sbjct: 499 NEDGSRTALSAVDMTQREAVAKQLLTP 525
>gi|410216876|gb|JAA05657.1| polymerase (RNA) I polypeptide A, 194kDa [Pan troglodytes]
gi|410255060|gb|JAA15497.1| polymerase (RNA) I polypeptide A, 194kDa [Pan troglodytes]
gi|410306946|gb|JAA32073.1| polymerase (RNA) I polypeptide A, 194kDa [Pan troglodytes]
Length = 1720
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 172/524 (32%), Positives = 278/524 (53%), Gaps = 53/524 (10%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P +SLG+ GLYDLA+GP + + C+TC +++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSK-EVCSTCVQDFSNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELP+ V N L F + LLL+ SC CH + P L + Q+++L+ G + +L
Sbjct: 79 GHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSIL---------AHGTKICDINDYKGGEELRS 297
E L F EEN +++ + ++ + I+ AH +C E RS
Sbjct: 139 ERILNRFLEENADPSASEIREELEQYTTEIVQNNLLGSQGAHVKNVC---------ESRS 189
Query: 298 AFVAQVLSRHV-KRKCIFCATPINAISYQQR-KIIKSF-KIDKDNLDQSLDKSLNKSSNQ 354
+A H+ ++C C T + + + K+ +F + Q + L Q
Sbjct: 190 KLIALFWKAHMNAKRCPHCKTGRSIVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQ 249
Query: 355 IIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDT--TKELIATDIMFIRSLVVPP 412
I ++ GY+ + LW NE FL L +D + + F+ LVVPP
Sbjct: 250 IGKR---GYLTPTSAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPP 306
Query: 413 NNLRPLSM--EQMPPVEHSRNKLYQSILYSCGSLKSVIMAMK--------------NKEQ 456
+ RP+S +QM + N Q+++ ++ ++ M ++E+
Sbjct: 307 SRYRPVSRLGDQMFTNGQTVN--LQAVMKDVVLIQKLLALMAQEQNLPEEVATPTTDEEK 364
Query: 457 SDLLS---EALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQML 513
L++ L + G +L +KL N W LQ +V+++ D++++ + G++Q+L
Sbjct: 365 DSLIAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMD---KLMMDKYPGIRQIL 421
Query: 514 DGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLR 573
+ K G+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR
Sbjct: 422 EKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELR 481
Query: 574 KMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
+ VINGPNV+PGA+M+ NEDGS +S+ QRE++AK+L+TP
Sbjct: 482 QAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTP 525
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 66/87 (75%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 439 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 498
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +S+ QRE++AK+L+TP
Sbjct: 499 NEDGSRTALSAVDMTQREAVAKQLLTP 525
>gi|219518786|gb|AAI43346.1| Polymerase (RNA) I polypeptide A, 194kDa [Homo sapiens]
Length = 1720
Score = 259 bits (663), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 171/524 (32%), Positives = 278/524 (53%), Gaps = 53/524 (10%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P +SLG+ GLYDLA+GP + + C+TC +++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSK-EVCSTCVQDFSNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELP+ V N L F + LLL+ SC CH + P L + Q+++L+ G + +L
Sbjct: 79 GHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSIL---------AHGTKICDINDYKGGEELRS 297
E L F EEN +++ + ++ + I+ AH +C E +S
Sbjct: 139 ERILNRFLEENADPSASEIREELEQYTTEIVQNNLLGSQGAHVKNVC---------ESKS 189
Query: 298 AFVAQVLSRHV-KRKCIFCATPINAISYQQR-KIIKSF-KIDKDNLDQSLDKSLNKSSNQ 354
+A H+ ++C C T + + + K+ +F + Q + L Q
Sbjct: 190 KLIALFWKAHMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQ 249
Query: 355 IIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDT--TKELIATDIMFIRSLVVPP 412
I ++ GY+ + LW NE FL L +D + + F+ LVVPP
Sbjct: 250 IGKR---GYLTPTSAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPP 306
Query: 413 NNLRPLSM--EQMPPVEHSRNKLYQSILYSCGSLKSVIMAMK--------------NKEQ 456
+ RP+S +QM + N Q+++ ++ ++ M ++E+
Sbjct: 307 SRYRPVSRLGDQMFTNGQTVN--LQAVMKDVVLIRKLLALMAQEQKLPEEVATPTTDEEE 364
Query: 457 SDLLS---EALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQML 513
L++ L + G +L +KL N W LQ +V+++ D++++ + G++Q+L
Sbjct: 365 DSLIAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMD---KLMMDKYPGIRQIL 421
Query: 514 DGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLR 573
+ K G+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR
Sbjct: 422 EKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELR 481
Query: 574 KMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
+ VINGPNV+PGA+M+ NEDGS +S+ QRE++AK+L+TP
Sbjct: 482 QAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTP 525
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 66/87 (75%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 439 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 498
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +S+ QRE++AK+L+TP
Sbjct: 499 NEDGSRTALSAVDMTQREAVAKQLLTP 525
>gi|403303957|ref|XP_003942581.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Saimiri
boliviensis boliviensis]
Length = 1720
Score = 259 bits (662), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 174/515 (33%), Positives = 276/515 (53%), Gaps = 35/515 (6%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P +SLG+ GLYDLA+GP + + C+TC ++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRFLDSLGNPSANGLYDLALGPADSK-EVCSTCVQDFNNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELP+ V N L F + LLL+ SC CH + P L I Q+++L+ G + +L
Sbjct: 79 GHIELPLMVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLICQLRVLEVGALQAVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSR 306
E L F EEN +++ + ++ + I+ + K E RS +A
Sbjct: 139 ERILNRFLEENADPSASEIQEELEQYTTEIVQNNLLGSQGAQVKNVCESRSKLIAFFWKT 198
Query: 307 HVK-RKCIFCATPINAISYQQR-KIIKSF-KIDKDNLDQSLDKSLNKSSNQIIRKREQGY 363
H+ ++C C T + + + K+ +F + Q + L Q+ ++ GY
Sbjct: 199 HMNPKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQMGKR---GY 255
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPVL--DTTKELIATDIMFIRSLVVPPNNLRPLSM- 420
+ + LW NE FL L + D T+ + F+ LVVPP+ RP+S
Sbjct: 256 LTPTSAREQLLALWKNEGFFLNYLFSGVEDDDTESRFNPSVFFLDFLVVPPSRYRPVSRV 315
Query: 421 -EQMPPVEHSRNKLYQSILYSCGSLKSVI--MAMKNK-----------EQSDLL----SE 462
+QM + N Q+++ ++ ++ MA + K E+ D L
Sbjct: 316 GDQMFTNGQTVN--LQAVMKDVVLIRKLLALMAQEQKLPGDVAVPPTDEEKDSLIAIDRS 373
Query: 463 ALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQ 522
L + G + +KL N W LQ +V+++ D++++ T + G++Q+L+ K G+ R+
Sbjct: 374 FLSTLPGQSFIDKLYNIWVRLQSHVNIVFDSEMDKLMTD---KYPGIRQILEKKEGLFRK 430
Query: 523 NMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNV 582
+MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV
Sbjct: 431 HMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNV 490
Query: 583 YPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
+PGA+M+ NEDGS +S+ QRE++AK+L+TP
Sbjct: 491 HPGASMVINEDGSRTALSTVDVSQREAVAKQLLTP 525
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 66/87 (75%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 439 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 498
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +S+ QRE++AK+L+TP
Sbjct: 499 NEDGSRTALSTVDVSQREAVAKQLLTP 525
>gi|119619873|gb|EAW99467.1| polymerase (RNA) I polypeptide A, 194kDa, isoform CRA_a [Homo
sapiens]
gi|119619875|gb|EAW99469.1| polymerase (RNA) I polypeptide A, 194kDa, isoform CRA_a [Homo
sapiens]
Length = 1720
Score = 259 bits (662), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 174/524 (33%), Positives = 278/524 (53%), Gaps = 53/524 (10%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P +SLG+ GLYDLA+GP + + C+TC +++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSK-EVCSTCVQDFSNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELP+ V N L F + LLL+ SC CH + P L + Q+++L+ G + +L
Sbjct: 79 GHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSIL---------AHGTKICDINDYKGGEELRS 297
E L F EEN +++ + ++ + I+ AH +C E +S
Sbjct: 139 ERILNRFLEENADPSASEIREELEQYTTEIVQNNLLGSQGAHVKNVC---------ESKS 189
Query: 298 AFVAQVLSRHV-KRKCIFCATPINAISYQQR-KIIKSF-KIDKDNLDQSLDKSLNKSSNQ 354
+A H+ ++C C T + + + K+ +F + Q + L Q
Sbjct: 190 KLIALFWKAHMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQ 249
Query: 355 IIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDT--TKELIATDIMFIRSLVVPP 412
I ++ GY+ + LW NE FL L +D + + F+ LVVPP
Sbjct: 250 IGKR---GYLTPTSAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPP 306
Query: 413 NNLRPLSM--EQMPPVEHSRNKLYQSILYSCGSLKSVI--MAMKNK-----------EQS 457
+ RP+S +QM + N Q+++ ++ ++ MA + K E+
Sbjct: 307 SRYRPVSRLGDQMFTNGQTVN--LQAVMKDVVLIRKLLALMAQEQKLPEEVATPTTDEEK 364
Query: 458 DLL----SEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQML 513
D L L + G +L +KL N W LQ +V+++ D++++ + G++Q+L
Sbjct: 365 DSLIAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMD---KLMMDKYPGIRQIL 421
Query: 514 DGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLR 573
+ K G+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR
Sbjct: 422 EKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELR 481
Query: 574 KMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
+ VINGPNV+PGA+M+ NEDGS +S+ QRE++AK+L+TP
Sbjct: 482 QAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTP 525
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 66/87 (75%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 439 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 498
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +S+ QRE++AK+L+TP
Sbjct: 499 NEDGSRTALSAVDMTQREAVAKQLLTP 525
>gi|149247078|ref|XP_001527964.1| DNA-directed RNA polymerase I 190 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
gi|146447918|gb|EDK42306.1| DNA-directed RNA polymerase I 190 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
Length = 1668
Score = 259 bits (662), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 179/542 (33%), Positives = 276/542 (50%), Gaps = 61/542 (11%)
Query: 130 TDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+D E+++LS ++ +PI F++LGH + GGLYDL++G + C TCG + C GH+G
Sbjct: 20 SDAEIQKLSAKQISNPIVFDNLGHPVNGGLYDLSLGAFLR--NVCATCGLDEKFCPGHMG 77
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLE 249
HI+LPVPV N +FF + + L+ SC CH + LF +++L+ G + + +LE
Sbjct: 78 HIDLPVPVYNPMFFNQLYIFLRSSCLYCHHFKMNWLEVNLFKCKLQLIQYGLLLECVELE 137
Query: 250 ETL--------------------------FNEENLRLHPAQLVQLVDSHVQSILAHG-TK 282
L +E+ R + Q V + + L G T
Sbjct: 138 NILPSGKSTKGSIDEVEEAEEGEGEEDVTGDEKTRRELMEKREQFVKNAIADALRDGRTT 197
Query: 283 ICDINDYKGGEELRSAFVAQVLSRHVKR-KCIFCATPINAISYQQRKIIKSF-------K 334
+ GEE R A + R + R KC C + + S+++ K F +
Sbjct: 198 PKGVITASVGEE-RKAVIHDFYKRLLARPKCSNCG--MYSPSFRKDGFTKIFENALNDKQ 254
Query: 335 IDKDNLD--QSLD---------KSLNKSSN-----QIIRKREQGYVMASEVEADFKKLWT 378
+ + + Q LD +++ K+SN I K Y++ASEV + ++
Sbjct: 255 VSNNRVKGLQRLDMIRSSSVGKEAVKKASNASDIPNIKHKGGSKYMLASEVRNIMRAVFE 314
Query: 379 NEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSIL 438
E L+ + ELI DI F ++LVVPP R S E+++N+ +IL
Sbjct: 315 KEQAVLQKVFHSRPYQHELIKGDIFFKQALVVPPTRFRLPSKLGDQIHENAQNESLSNIL 374
Query: 439 YSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNIN 498
+ ++++ N + S + + + G + L N+L NS+ LQ +V+ +DA N N
Sbjct: 375 KTSALIRNL-----NGQISQMYKDKISGEQKKILFNRLMNSFVTLQNDVNAFIDATKNQN 429
Query: 499 KTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTL 558
G G+KQ L+ K G+ R++MMGKRVN+A RSVI+PDP L + IGVP FAK L
Sbjct: 430 APAGKVPNPGIKQDLEKKEGLFRKHMMGKRVNYAARSVISPDPNLETNEIGVPPVFAKKL 489
Query: 559 TYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPE 618
TYP PVT N LR+ VINGP+V+PGA IQNEDG ++ ++ QR++LA +L+TP
Sbjct: 490 TYPEPVTAHNAAELRQAVINGPDVWPGAVQIQNEDGKLINLTGMSVEQRKALANQLLTPS 549
Query: 619 GN 620
GN
Sbjct: 550 GN 551
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 61/87 (70%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP L + IGVP FAK LTYP PVT N LR+ VINGP+V+PGA IQ
Sbjct: 462 YAARSVISPDPNLETNEIGVPPVFAKKLTYPEPVTAHNAAELRQAVINGPDVWPGAVQIQ 521
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDG ++ ++ QR++LA +L+TP
Sbjct: 522 NEDGKLINLTGMSVEQRKALANQLLTP 548
>gi|426336242|ref|XP_004029609.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Gorilla
gorilla gorilla]
Length = 1720
Score = 259 bits (662), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 174/524 (33%), Positives = 278/524 (53%), Gaps = 53/524 (10%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P +SLG+ GLYDLA+GP + + C+TC +++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSK-EVCSTCVQDFSNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELP+ V N L F + LLL+ SC CH + P L + Q+++L+ G + +L
Sbjct: 79 GHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSIL---------AHGTKICDINDYKGGEELRS 297
E L F EEN +++ + ++ + I+ AH +C E +S
Sbjct: 139 ERILNRFLEENADPSASEIREELEQYTTEIVQNNLLGSQGAHVKNVC---------ESKS 189
Query: 298 AFVAQVLSRHV-KRKCIFCATPINAISYQQR-KIIKSF-KIDKDNLDQSLDKSLNKSSNQ 354
+A H+ ++C C T + + + K+ +F + Q + L Q
Sbjct: 190 KLIALFWKAHMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQ 249
Query: 355 IIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDT--TKELIATDIMFIRSLVVPP 412
I ++ GY+ + LW NE FL L +D + + F+ LVVPP
Sbjct: 250 IGKR---GYLTPTSAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPP 306
Query: 413 NNLRPLSM--EQMPPVEHSRNKLYQSILYSCGSLKSVI--MAMKNK-----------EQS 457
+ RP+S +QM + N Q+++ ++ ++ MA + K E+
Sbjct: 307 SRYRPVSRLGDQMFTNGQTVN--LQAVMKDVVLIRKLLALMAQEQKLPEEVATPTTDEEK 364
Query: 458 DLL----SEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQML 513
D L L + G +L +KL N W LQ +V+++ D++++ + G++Q+L
Sbjct: 365 DSLIAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMD---KLMMDKYPGIRQIL 421
Query: 514 DGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLR 573
+ K G+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR
Sbjct: 422 EKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELR 481
Query: 574 KMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
+ VINGPNV+PGA+M+ NEDGS +S+ QRE++AK+L+TP
Sbjct: 482 QAVINGPNVHPGASMVINEDGSRTALSAVNMTQREAVAKQLLTP 525
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 66/87 (75%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 439 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 498
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +S+ QRE++AK+L+TP
Sbjct: 499 NEDGSRTALSAVNMTQREAVAKQLLTP 525
>gi|395853511|ref|XP_003799250.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 isoform 1
[Otolemur garnettii]
Length = 1720
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 172/514 (33%), Positives = 275/514 (53%), Gaps = 33/514 (6%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P +SLG+ GLYDLA+GP + + C+TC +++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSK-EVCSTCVQDFSNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELP+ V N L F + LLL+ SC CH + P L + Q+K+L+ G + +L
Sbjct: 79 GHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLVCQLKVLEVGALQAVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSR 306
E+ L F EEN ++ + ++ + I+ + K E RS +A
Sbjct: 139 EQILNRFLEENANPSAFEIQEELERYTTEIVQNNLLGSQGAYVKNVCESRSRLIAYFWKA 198
Query: 307 HV-KRKCIFCATPINAISYQQ-RKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYV 364
H+ ++C C T + + + K+ +F D + + + KR GY+
Sbjct: 199 HMTAKRCPHCKTGRSLVRKEHNSKLTVTFPTMVHRKAGQKDPEIVGIEDMQMGKR--GYL 256
Query: 365 MASEVEADFKKLWTNEHLFLKCLIPVLDT--TKELIATDIMFIRSLVVPPNNLRPLSM-- 420
+ LW NE FL L LD T+ + F+ LVVPP+ RP++
Sbjct: 257 TPTSAREHLFSLWKNEGFFLNYLFSGLDDVGTESAFNPSMFFLDFLVVPPSRYRPVNRLG 316
Query: 421 EQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQ---------SDLLSEALKGIR--- 468
+QM + N Q+++ ++ ++ M +++ +D ++ GI
Sbjct: 317 DQMFTNGQTVN--LQAVMKDIVLIRKLLALMAQEQKLPWEVAIPTTDEEKDSTTGIDRSF 374
Query: 469 -----GDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQN 523
G L +KL N W LQ +V+++ D++++ K T + G++Q+L+ K G+ R++
Sbjct: 375 LSALPGQALTDKLYNIWIRLQSHVNIVFDSEMD--KLT-VEKYPGIRQILEKKEGLFRKH 431
Query: 524 MMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVY 583
MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGP V+
Sbjct: 432 MMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPGVH 491
Query: 584 PGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
PGA+M+ NEDGS +S+ QRE++AK+L+TP
Sbjct: 492 PGASMVINEDGSRTALSTVDISQREAVAKQLLTP 525
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 65/87 (74%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGP V+PGA+M+
Sbjct: 439 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPGVHPGASMVI 498
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +S+ QRE++AK+L+TP
Sbjct: 499 NEDGSRTALSTVDISQREAVAKQLLTP 525
>gi|354483551|ref|XP_003503956.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Cricetulus
griseus]
Length = 707
Score = 259 bits (661), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 173/530 (32%), Positives = 281/530 (53%), Gaps = 58/530 (10%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P +SLG+ GLYDLA+GP + + C+TC +++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYVDSLGNPSANGLYDLALGPADSK-EVCSTCVQDFSNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELP+ V N L F + LLL+ SC CH + P + L + Q+++L+ G + +L
Sbjct: 79 GHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAAIHLLVCQLRVLEVGALQAVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSIL---------AHGTKICDINDYKGGEELRS 297
E L F EE ++ + ++ + IL AH +C E RS
Sbjct: 139 ERILSRFLEETANPSAFEIQEELEEYTSKILQNNLLGSQGAHVKNVC---------ESRS 189
Query: 298 AFVAQVLSRHV-KRKCIFCATPINAISYQQR-KIIKSFKIDKDNLDQSLDKSLNKS---- 351
+A H+ ++C C T + I + K+ ++ + D ++
Sbjct: 190 RLIAYFWKTHMTAKRCPHCKTGRSVIRKEHNSKLTITYPVTAHKKSGQKDAEPSEGVPVA 249
Query: 352 ---SNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDT--TKELIATDIMFIR 406
++ KR GY+ S + +W NE FL L LD + + F+
Sbjct: 250 PGIEEALMGKR--GYLTPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGMESSFNPSMFFLD 307
Query: 407 SLVVPPNNLRPLSM--EQMPPVEHSRNKLYQSILYSCGSLKSVI--MAMKNK---EQSDL 459
+VVPP+ RP++ +QM + N Q+++ ++ ++ MA + K E ++L
Sbjct: 308 FIVVPPSRYRPVNRLGDQMFTNGQTVN--LQAVMKDAVLIRKLLALMAQEQKLPCEVTEL 365
Query: 460 LSEA------------LKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQID 507
++ L + G +L +KL N W LQ +V+++ D++++ +
Sbjct: 366 TTDKENDSSVAIDRSFLSMLPGQSLTDKLYNIWIRLQSHVNIVFDSEMD---KLMMEKYP 422
Query: 508 GLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPW 567
G++Q+L+ K G+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPW
Sbjct: 423 GIRQILEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPW 482
Query: 568 NVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
NV LR+ VINGPNV+PGA+M+ NEDGS +S+ A QRE++AK+L+TP
Sbjct: 483 NVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDATQREAVAKQLLTP 532
Score = 115 bits (289), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 67/87 (77%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 446 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 505
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +S+ A QRE++AK+L+TP
Sbjct: 506 NEDGSRTALSAVDATQREAVAKQLLTP 532
>gi|395853513|ref|XP_003799251.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 isoform 2
[Otolemur garnettii]
Length = 1668
Score = 259 bits (661), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 172/514 (33%), Positives = 275/514 (53%), Gaps = 33/514 (6%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P +SLG+ GLYDLA+GP + + C+TC +++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSK-EVCSTCVQDFSNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELP+ V N L F + LLL+ SC CH + P L + Q+K+L+ G + +L
Sbjct: 79 GHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLVCQLKVLEVGALQAVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSR 306
E+ L F EEN ++ + ++ + I+ + K E RS +A
Sbjct: 139 EQILNRFLEENANPSAFEIQEELERYTTEIVQNNLLGSQGAYVKNVCESRSRLIAYFWKA 198
Query: 307 HV-KRKCIFCATPINAISYQQR-KIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYV 364
H+ ++C C T + + + K+ +F D + + + KR GY+
Sbjct: 199 HMTAKRCPHCKTGRSLVRKEHNSKLTVTFPTMVHRKAGQKDPEIVGIEDMQMGKR--GYL 256
Query: 365 MASEVEADFKKLWTNEHLFLKCLIPVLDT--TKELIATDIMFIRSLVVPPNNLRPLSM-- 420
+ LW NE FL L LD T+ + F+ LVVPP+ RP++
Sbjct: 257 TPTSAREHLFSLWKNEGFFLNYLFSGLDDVGTESAFNPSMFFLDFLVVPPSRYRPVNRLG 316
Query: 421 EQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQ---------SDLLSEALKGIR--- 468
+QM + N Q+++ ++ ++ M +++ +D ++ GI
Sbjct: 317 DQMFTNGQTVN--LQAVMKDIVLIRKLLALMAQEQKLPWEVAIPTTDEEKDSTTGIDRSF 374
Query: 469 -----GDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQN 523
G L +KL N W LQ +V+++ D++++ K T + G++Q+L+ K G+ R++
Sbjct: 375 LSALPGQALTDKLYNIWIRLQSHVNIVFDSEMD--KLT-VEKYPGIRQILEKKEGLFRKH 431
Query: 524 MMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVY 583
MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGP V+
Sbjct: 432 MMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPGVH 491
Query: 584 PGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
PGA+M+ NEDGS +S+ QRE++AK+L+TP
Sbjct: 492 PGASMVINEDGSRTALSTVDISQREAVAKQLLTP 525
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 65/87 (74%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGP V+PGA+M+
Sbjct: 439 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPGVHPGASMVI 498
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +S+ QRE++AK+L+TP
Sbjct: 499 NEDGSRTALSTVDISQREAVAKQLLTP 525
>gi|354545083|emb|CCE41808.1| hypothetical protein CPAR2_803580 [Candida parapsilosis]
Length = 1670
Score = 259 bits (661), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 178/542 (32%), Positives = 268/542 (49%), Gaps = 70/542 (12%)
Query: 130 TDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+D EV++LS ++ +PI F++LGH + GGLYDL++G + CTTCG + C GH+G
Sbjct: 20 SDNEVQKLSSKQITNPIVFDNLGHPVNGGLYDLSLGAFLR--NVCTTCGLDEKFCPGHMG 77
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLE 249
HIELPVPV N +FF + + L+ SC CH + LF +++L+ G + + +LE
Sbjct: 78 HIELPVPVYNPMFFNQLYIFLRSSCLYCHHFKLSHLEVHLFKCKLQLIQYGLLLECSELE 137
Query: 250 ETLFNEENLRLHPA-QLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHV 308
+ PA + + + ++ + G + D K E R FV +S +
Sbjct: 138 NIM---------PAGKSAKEMSNNDEDEEDEGVSV-DAKTKKELMERREEFVKNAISAAL 187
Query: 309 KRKCIFCATPINAISYQQRK-IIKSF------------------KIDKDNLDQSLDKSLN 349
K I A ++RK +I F KD + + SLN
Sbjct: 188 KDGRTNAKGIITASVGEERKEVIHGFYRRLLSRPKCSNCGMYSPSFRKDGFTKIFENSLN 247
Query: 350 KSSNQIIRKREQG-------------------------------YVMASEVEADFKKLWT 378
QI R +G YV++SEV + ++
Sbjct: 248 --DKQITNNRVRGLQRPDMIKKNGSSNSSAASDIPNIKHKGGSKYVLSSEVRNIIRAVFK 305
Query: 379 NEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSIL 438
NE L+ + E ++ DI F +S++VPP R S E+++N+L +IL
Sbjct: 306 NEQPVLQKVFHSRPYQHEYVSGDIFFKQSILVPPTRFRLPSKLGDEIHENAQNELLSNIL 365
Query: 439 YSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNIN 498
+ +V++A N + S + L G + N+L NS+ LQ +V+ +D+ N N
Sbjct: 366 KT-----TVLIAELNTQISQMYEAKLSGEQKKIAFNRLMNSFVTLQNDVNAFIDSTKNQN 420
Query: 499 KTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTL 558
G G+KQ L+ K G+ R++MMGKRVN+A RSVI+PDP L + IGVP FAK L
Sbjct: 421 APAGKVPNPGIKQALEKKEGLFRKHMMGKRVNYAARSVISPDPNLETNEIGVPPVFAKKL 480
Query: 559 TYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPE 618
TYP PVT N LR+ VINGP +PGA IQNEDGS++ + QR++LA +L+TP
Sbjct: 481 TYPEPVTSHNAAELRQAVINGPEKWPGAVQIQNEDGSLISLIGMSLEQRKALANQLLTPT 540
Query: 619 GN 620
G+
Sbjct: 541 GS 542
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 59/87 (67%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP L + IGVP FAK LTYP PVT N LR+ VINGP +PGA IQ
Sbjct: 453 YAARSVISPDPNLETNEIGVPPVFAKKLTYPEPVTSHNAAELRQAVINGPEKWPGAVQIQ 512
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS++ + QR++LA +L+TP
Sbjct: 513 NEDGSLISLIGMSLEQRKALANQLLTP 539
>gi|119619874|gb|EAW99468.1| polymerase (RNA) I polypeptide A, 194kDa, isoform CRA_b [Homo
sapiens]
Length = 1128
Score = 259 bits (661), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 171/524 (32%), Positives = 278/524 (53%), Gaps = 53/524 (10%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P +SLG+ GLYDLA+GP + + C+TC +++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSK-EVCSTCVQDFSNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELP+ V N L F + LLL+ SC CH + P L + Q+++L+ G + +L
Sbjct: 79 GHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSIL---------AHGTKICDINDYKGGEELRS 297
E L F EEN +++ + ++ + I+ AH +C E +S
Sbjct: 139 ERILNRFLEENADPSASEIREELEQYTTEIVQNNLLGSQGAHVKNVC---------ESKS 189
Query: 298 AFVAQVLSRHV-KRKCIFCATPINAISYQQR-KIIKSF-KIDKDNLDQSLDKSLNKSSNQ 354
+A H+ ++C C T + + + K+ +F + Q + L Q
Sbjct: 190 KLIALFWKAHMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQ 249
Query: 355 IIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDT--TKELIATDIMFIRSLVVPP 412
I ++ GY+ + LW NE FL L +D + + F+ LVVPP
Sbjct: 250 IGKR---GYLTPTSAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPP 306
Query: 413 NNLRPLSM--EQMPPVEHSRNKLYQSILYSCGSLKSVIMAMK--------------NKEQ 456
+ RP+S +QM + N Q+++ ++ ++ M ++E+
Sbjct: 307 SRYRPVSRLGDQMFTNGQTVN--LQAVMKDVVLIRKLLALMAQEQKLPEEVATPTTDEEK 364
Query: 457 SDLLS---EALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQML 513
L++ L + G +L +KL N W LQ +V+++ D++++ + G++Q+L
Sbjct: 365 DSLIAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMD---KLMMDKYPGIRQIL 421
Query: 514 DGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLR 573
+ K G+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR
Sbjct: 422 EKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELR 481
Query: 574 KMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
+ VINGPNV+PGA+M+ NEDGS +S+ QRE++AK+L+TP
Sbjct: 482 QAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTP 525
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 66/87 (75%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 439 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 498
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +S+ QRE++AK+L+TP
Sbjct: 499 NEDGSRTALSAVDMTQREAVAKQLLTP 525
>gi|103471997|ref|NP_056240.2| DNA-directed RNA polymerase I subunit RPA1 [Homo sapiens]
gi|215273873|sp|O95602.2|RPA1_HUMAN RecName: Full=DNA-directed RNA polymerase I subunit RPA1; Short=RNA
polymerase I subunit A1; AltName: Full=A190; AltName:
Full=DNA-directed RNA polymerase I largest subunit;
AltName: Full=DNA-directed RNA polymerase I subunit A;
AltName: Full=RNA polymerase I 194 kDa subunit;
Short=RPA194
gi|111599664|gb|AAI17174.1| Polymerase (RNA) I polypeptide A, 194kDa [Homo sapiens]
gi|116497177|gb|AAI26304.1| Polymerase (RNA) I polypeptide A, 194kDa [Homo sapiens]
gi|221044078|dbj|BAH13716.1| unnamed protein product [Homo sapiens]
Length = 1720
Score = 258 bits (660), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 174/524 (33%), Positives = 278/524 (53%), Gaps = 53/524 (10%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P +SLG+ GLYDLA+GP + + C+TC +++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSK-EVCSTCVQDFSNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELP+ V N L F + LLL+ SC CH + P L + Q+++L+ G + +L
Sbjct: 79 GHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSIL---------AHGTKICDINDYKGGEELRS 297
E L F EEN +++ + ++ + I+ AH +C E +S
Sbjct: 139 ERILNRFLEENPDPSASEIREELEQYTTEIVQNNLLGSQGAHVKNVC---------ESKS 189
Query: 298 AFVAQVLSRHV-KRKCIFCATPINAISYQQR-KIIKSF-KIDKDNLDQSLDKSLNKSSNQ 354
+A H+ ++C C T + + + K+ +F + Q + L Q
Sbjct: 190 KLIALFWKAHMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQ 249
Query: 355 IIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDT--TKELIATDIMFIRSLVVPP 412
I ++ GY+ + LW NE FL L +D + + F+ LVVPP
Sbjct: 250 IGKR---GYLTPTSAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPP 306
Query: 413 NNLRPLSM--EQMPPVEHSRNKLYQSILYSCGSLKSVI--MAMKNK-----------EQS 457
+ RP+S +QM + N Q+++ ++ ++ MA + K E+
Sbjct: 307 SRYRPVSRLGDQMFTNGQTVN--LQAVMKDVVLIRKLLALMAQEQKLPEEVATPTTDEEK 364
Query: 458 DLL----SEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQML 513
D L L + G +L +KL N W LQ +V+++ D++++ + G++Q+L
Sbjct: 365 DSLIAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMD---KLMMDKYPGIRQIL 421
Query: 514 DGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLR 573
+ K G+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR
Sbjct: 422 EKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELR 481
Query: 574 KMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
+ VINGPNV+PGA+M+ NEDGS +S+ QRE++AK+L+TP
Sbjct: 482 QAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTP 525
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 66/87 (75%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 439 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 498
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +S+ QRE++AK+L+TP
Sbjct: 499 NEDGSRTALSAVDMTQREAVAKQLLTP 525
>gi|426223541|ref|XP_004005933.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I
subunit RPA1 [Ovis aries]
Length = 1720
Score = 258 bits (659), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 171/513 (33%), Positives = 272/513 (53%), Gaps = 31/513 (6%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P +SLG+ GLYDLA+GP + + C+TC ++T C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYLDSLGNPSVNGLYDLALGPADSK-EVCSTCVQDFTHCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELP+ V N L F + LLL+ SC CH + P L + Q+++L+ G + +L
Sbjct: 79 GHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVVHLLLCQLRVLEVGALQAVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSR 306
E L F EEN ++ + ++ + IL + K E RS ++
Sbjct: 139 ERILYRFLEENANPTACEIQEELEQYTIEILQNNLLGSQGAQVKNVCESRSKLISVFWKV 198
Query: 307 HV-KRKCIFCATPINAI--SYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGY 363
H+ ++C C T + I + + I + DQ + Q+ ++ GY
Sbjct: 199 HMTAKRCPHCKTGRSVIRKEHNSKLTITYPAMVHRRADQKDTEPQGIEEAQMGKR---GY 255
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPVLDTT--KELIATDIMFIRSLVVPPNNLRPLSM- 420
+ S + LW NE FL L L+ + + F+ LVVPP+ RP++
Sbjct: 256 LTPSSAQEHLIALWKNEGFFLNYLFLGLEDVGMESRFNPSMFFLDFLVVPPSRYRPVNRL 315
Query: 421 -EQMPPVEHSRN-----------KLYQSILYSCGSLKSVIMAMKNKEQSD----LLSEAL 464
+QM + N + +++ L S + A +E+ D + L
Sbjct: 316 GDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQELPSEVAAPTTEEEKDSSMTMDRSFL 375
Query: 465 KGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNM 524
+ G +L ++L N W LQ +V+++ D++++ + G++Q+L+ K G+ R++M
Sbjct: 376 SQLPGQSLTDRLYNIWIRLQSHVNIVFDSEMD---KLMMEKYPGIRQILEKKDGLFRKHM 432
Query: 525 MGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYP 584
MGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+P
Sbjct: 433 MGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHP 492
Query: 585 GANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
GA+M+ NEDGS +S+S QRE++AK+L+TP
Sbjct: 493 GASMVINEDGSRTALSASDLTQREAVAKQLLTP 525
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 67/87 (77%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 439 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 498
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +S+S QRE++AK+L+TP
Sbjct: 499 NEDGSRTALSASDLTQREAVAKQLLTP 525
>gi|148238249|ref|NP_001082182.1| polymerase (RNA) I polypeptide A, 194kDa [Xenopus laevis]
gi|18032797|gb|AAL56846.1|AF309686_1 RNA polymerase I large subunit [Xenopus laevis]
Length = 1730
Score = 258 bits (659), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 173/521 (33%), Positives = 286/521 (54%), Gaps = 41/521 (7%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+++LSV + +P +SLG+ + GL+DLA GP + + C++C ++T C GH+
Sbjct: 20 YSAEEIRKLSVKALTNPRYMDSLGNPLMNGLHDLAQGPADGK-EVCSSCFQDFTSCPGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELP+ V N LFF + L++ SCF CH + + L +NQ+KLLD G + +L
Sbjct: 79 GHIELPLTVYNPLFFDKLYFLVRGSCFHCHLLTCNRSVIHLLLNQLKLLDRGVEHEVYEL 138
Query: 249 EETLFN--EENLRLHPAQLVQLVDSHVQSILAHGTKI-----CDINDYKGGEELRSAFVA 301
E L E N ++ + ++++ + +L K+ C + K R+ +
Sbjct: 139 ENVLHRVLEANAAATGHEIQEELENYTRKVLKKYKKLPRGTSCQV---KNTCVTRNRLIG 195
Query: 302 QVLSRH-VKRKCIFCATPINAISYQQRK---IIKSFKIDKDNLDQSLDKSLNKSSNQIIR 357
+ V KC C P + + + II S K + ++ + +
Sbjct: 196 NFWKKQMVSAKCPNCKAPRSVVRKEHNSKLTIIMSSKPSSSSKGGAMPAEGDMDVIDSTQ 255
Query: 358 KREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIAT-DIMFIRSLVVPPNNLR 416
++GY+ + + +LW NE FL+ L + E T D F+ +VVPP+ R
Sbjct: 256 LAKRGYLTPNTTKELIMELWKNEGFFLQHLFSGITGGGESAFTPDTFFLDIIVVPPSRFR 315
Query: 417 PLSM--EQMPPVEHSRNKLYQSILYSCGSLKSVIMAM-KNKEQSDLLSEA---------- 463
P++ +QM H+ N QS+L +++ ++ M +++EQ+ L+E+
Sbjct: 316 PVNRLGDQMFTNGHTIN--LQSVLKDISTIQKLLAVMAQDQEQTPELTESGMNLKEAEVT 373
Query: 464 -------LKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGK 516
L + G +L +KL NSW LQ +V+++ D+ ++ + + G++Q+L+ K
Sbjct: 374 ENIDRSFLATLTGLSLTDKLYNSWVRLQSHVNIVFDSDMD---KLMSDKYPGIRQVLEKK 430
Query: 517 TGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMV 576
G+ R++MMGKRV+FA RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LRK V
Sbjct: 431 DGLFRKHMMGKRVDFAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRKAV 490
Query: 577 INGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
+NGPNV+PGA+M+ NEDGS ++S+ QR+++AK+L+TP
Sbjct: 491 LNGPNVHPGASMVINEDGSRTILNSTDLSQRDAVAKQLLTP 531
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/104 (51%), Positives = 72/104 (69%), Gaps = 2/104 (1%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LRK V+NGPNV+PGA+M+
Sbjct: 445 FAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRKAVLNGPNVHPGASMVI 504
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKIITRQ 117
NEDGS ++S+ QR+++AK+L+TP + KI+ R
Sbjct: 505 NEDGSRTILNSTDLSQRDAVAKQLLTPSTGTQ--TLNAKIVCRH 546
>gi|345782345|ref|XP_532976.3| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Canis lupus
familiaris]
Length = 1717
Score = 258 bits (658), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 168/521 (32%), Positives = 276/521 (52%), Gaps = 47/521 (9%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P +SLG+ GLYDLA+GP + + C+TC ++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSK-EVCSTCVQDFNNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELP+ V N L F + LLL+ SC CH + P L + Q+++L+ G + +L
Sbjct: 79 GHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLVCQLRVLEVGALQAVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSILA------HGTKICDINDYKGGEELRSAFV 300
E L F EEN ++ + ++ + I+ HG + ++ D RS +
Sbjct: 139 ERILNRFLEENADPTAFKIQEELEQYTAKIVQNNLLGPHGAHVKNVCDS------RSKLI 192
Query: 301 AQVLSRHV-KRKCIFCATPINAI--SYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIR 357
A H+ ++C C T + + + + + + DQ + L Q+ +
Sbjct: 193 AYFWKAHMTAKRCPHCKTGRSVVRKEHNSKLTVTYPAMVHKKADQKDTEPLGIEETQLGK 252
Query: 358 KREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTT--KELIATDIMFIRSLVVPPNNL 415
+ GY+ + LW NE FL L L+ + + F+ LVVPP+
Sbjct: 253 R---GYLTPTSAREHLTALWKNEGFFLNYLFSGLEDVDMESRFNPSVFFLDFLVVPPSRY 309
Query: 416 RPLSM--EQMPPVEHSRNKLYQSILYSCGSLKSVIMAM--------------KNKEQSDL 459
RP++ +QM + N Q+++ ++ ++ M K++E+
Sbjct: 310 RPVNRLGDQMFTNGQTVN--LQAVMKDMVLIRKLLALMAQEQELPCEVSGPAKDEEKDSS 367
Query: 460 LS---EALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGK 516
++ L + G +L +KL N W LQ +V+++ D++++ + G++Q+L+ K
Sbjct: 368 IALDRSFLSMLPGQSLTDKLYNIWIRLQSHVNIVFDSEMD---KLMMEKYPGIRQILEKK 424
Query: 517 TGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMV 576
G+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ V
Sbjct: 425 DGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAV 484
Query: 577 INGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
INGPNV+PGA+M+ NEDGS +S+ QRE++AK+L+TP
Sbjct: 485 INGPNVHPGASMVINEDGSRTALSAIDLTQREAVAKQLLTP 525
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 66/87 (75%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 439 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 498
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +S+ QRE++AK+L+TP
Sbjct: 499 NEDGSRTALSAIDLTQREAVAKQLLTP 525
>gi|390474234|ref|XP_003734751.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 isoform 2
[Callithrix jacchus]
Length = 1660
Score = 257 bits (657), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 173/515 (33%), Positives = 274/515 (53%), Gaps = 35/515 (6%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P +SLG+ GLYDLA+GP + + C+TC ++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRFLDSLGNPSANGLYDLALGPADSK-EVCSTCAQDFNNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELP+ V N L F + LLL+ SC CH + P L + Q+++L+ G + +L
Sbjct: 79 GHIELPLMVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSR 306
E L F EEN +++ + ++ + I+ + + K E RS +A
Sbjct: 139 ERILNRFLEENADPSASEIQEELEQYTTEIVQNNLLGSQGSHVKNVCESRSKIIAFFWKT 198
Query: 307 HVK-RKCIFCATPINAISYQQR-KIIKSFKID-KDNLDQSLDKSLNKSSNQIIRKREQGY 363
H+ ++C C T + + + K+ +F Q + L Q+ ++ GY
Sbjct: 199 HMNPKRCPHCKTGRSVVRKEHNSKLTITFPATVHRTAGQKDSEPLGIEEAQMGKR---GY 255
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPVLDT--TKELIATDIMFIRSLVVPPNNLRPLSM- 420
+ + LW NE FL L +D + + F+ LVVPP+ RP+S
Sbjct: 256 LTPTSAREHLFALWKNEGFFLNYLFSGVDNDGMESRFNPSVFFLDFLVVPPSRYRPVSRL 315
Query: 421 -EQMPPVEHSRNKLYQSILYSCGSLKSVI--MAMKNKEQSD----LLSEA---------- 463
+QM + N Q+++ ++ ++ MA + K D L E
Sbjct: 316 GDQMFTNGQTVN--LQAVMKDVVLIRKLLALMAQEQKLPGDVAVPLTDEGKDSLITIDRA 373
Query: 464 -LKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQ 522
L I G + +KL N W LQ +V+++ D++++ T + G++Q+L+ K G+ R+
Sbjct: 374 FLSTIPGQSFIDKLYNIWIRLQSHVNIVFDSEMDKLMTD---KYPGIRQILEKKEGLFRK 430
Query: 523 NMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNV 582
+MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV
Sbjct: 431 HMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNV 490
Query: 583 YPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
+PGA+M+ NEDGS +S+ QRE++AK+L+TP
Sbjct: 491 HPGASMVINEDGSRTALSAVDVSQREAVAKQLLTP 525
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 66/87 (75%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 439 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 498
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +S+ QRE++AK+L+TP
Sbjct: 499 NEDGSRTALSAVDVSQREAVAKQLLTP 525
>gi|296223364|ref|XP_002757589.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 isoform 1
[Callithrix jacchus]
Length = 1720
Score = 257 bits (657), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 173/515 (33%), Positives = 274/515 (53%), Gaps = 35/515 (6%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P +SLG+ GLYDLA+GP + + C+TC ++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRFLDSLGNPSANGLYDLALGPADSK-EVCSTCAQDFNNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELP+ V N L F + LLL+ SC CH + P L + Q+++L+ G + +L
Sbjct: 79 GHIELPLMVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSR 306
E L F EEN +++ + ++ + I+ + + K E RS +A
Sbjct: 139 ERILNRFLEENADPSASEIQEELEQYTTEIVQNNLLGSQGSHVKNVCESRSKIIAFFWKT 198
Query: 307 HVK-RKCIFCATPINAISYQQR-KIIKSFKID-KDNLDQSLDKSLNKSSNQIIRKREQGY 363
H+ ++C C T + + + K+ +F Q + L Q+ ++ GY
Sbjct: 199 HMNPKRCPHCKTGRSVVRKEHNSKLTITFPATVHRTAGQKDSEPLGIEEAQMGKR---GY 255
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPVLDT--TKELIATDIMFIRSLVVPPNNLRPLSM- 420
+ + LW NE FL L +D + + F+ LVVPP+ RP+S
Sbjct: 256 LTPTSAREHLFALWKNEGFFLNYLFSGVDNDGMESRFNPSVFFLDFLVVPPSRYRPVSRL 315
Query: 421 -EQMPPVEHSRNKLYQSILYSCGSLKSVI--MAMKNKEQSD----LLSEA---------- 463
+QM + N Q+++ ++ ++ MA + K D L E
Sbjct: 316 GDQMFTNGQTVN--LQAVMKDVVLIRKLLALMAQEQKLPGDVAVPLTDEGKDSLITIDRA 373
Query: 464 -LKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQ 522
L I G + +KL N W LQ +V+++ D++++ T + G++Q+L+ K G+ R+
Sbjct: 374 FLSTIPGQSFIDKLYNIWIRLQSHVNIVFDSEMDKLMTD---KYPGIRQILEKKEGLFRK 430
Query: 523 NMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNV 582
+MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV
Sbjct: 431 HMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNV 490
Query: 583 YPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
+PGA+M+ NEDGS +S+ QRE++AK+L+TP
Sbjct: 491 HPGASMVINEDGSRTALSAVDVSQREAVAKQLLTP 525
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 66/87 (75%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 439 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 498
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +S+ QRE++AK+L+TP
Sbjct: 499 NEDGSRTALSAVDVSQREAVAKQLLTP 525
>gi|321464634|gb|EFX75641.1| hypothetical protein DAPPUDRAFT_323145 [Daphnia pulex]
Length = 1740
Score = 257 bits (656), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 166/534 (31%), Positives = 276/534 (51%), Gaps = 41/534 (7%)
Query: 121 PEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNN 180
PE + ++T ++ ++SVV+V TFN+LGH I GLYD+ MGP S C TC
Sbjct: 11 PESVTFGFHTAHDITKISVVEVTQTDTFNALGHPITNGLYDMKMGPFSNDAGKCPTCSLG 70
Query: 181 YTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAG 240
C GH GHI LP+P + LF R+V ++K++C +C IP +L+ + Q++LL G
Sbjct: 71 MLHCPGHFGHIALPLPCYHPLFLRNVVAIMKMTCPVCKTFAIPEKDKLVLVGQLQLLKYG 130
Query: 241 YVTQAKDLEETL------FNEEN---LRLHPAQLVQL---VDSHVQSILAHGTKICDIND 288
+ A +L + ++E++ +L+ QL +L ++ ++ C N
Sbjct: 131 LIIDAHNLWQKTKPTVEDYDEDDGKATQLNEEQLDELRVNIEEEIKRAKEDAGITCGDNP 190
Query: 289 --YKGGEELRSAFVAQVLSRHV--KRKCI-FCATPINAISYQQRKIIKSFKIDKDNLDQS 343
+ E ++ F+ + + K+KC C I + +I+ S + D
Sbjct: 191 PPTRHVENMKMEFLKLFMLKFKTGKKKCAQGCKGGFERIQQYRSRIVYSLRHDTPTTSLG 250
Query: 344 LDKSLN----------------KSSNQIIRK-REQGYVMASEVEADFKKLWTNEHLFLKC 386
+ +N K+ ++ RK R YV + + LW N+
Sbjct: 251 GNMMINPVEFEEDLEDEDDVEGKTPSKHKRKPRATMYVTPKDARDLLRLLWENDKELFGQ 310
Query: 387 LIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKS 446
+ PVL T TD+ F+ + V P+ RP+++ ++ + + + I+ +K+
Sbjct: 311 MYPVLFKTNIDYPTDVFFLEVISVMPSKFRPVNIVGGIMSDNKQTAVLRKIVQDTYVVKT 370
Query: 447 VIMAMKNKEQSDLLSEA---LKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGA 503
+ + K ++ ++ LK ++G+TL KLQ +WH LQ NV++++DA N ++
Sbjct: 371 ALFCHEQKTMDNVPEDSKRFLKSLQGETLLEKLQTAWHALQENVNMIVDASTNKDE---- 426
Query: 504 HQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVP 563
+ G KQ+L+ K G++R NMMGKRVNFA RSVITPDP L+++ +GVP FAK LT+P P
Sbjct: 427 KNMIGFKQILEKKEGLLRMNMMGKRVNFAARSVITPDPNLDVEEVGVPDCFAKRLTFPTP 486
Query: 564 VTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
VT +NV +R V NGPNV+PGA I+ +G + ++ + R ++AK L+TP
Sbjct: 487 VTSFNVCEMRDAVRNGPNVWPGATHIEESNGKKINLNPNDEKSRAAIAKTLLTP 540
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 65/99 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVITPDP L+++ +GVP FAK LT+P PVT +NV +R V NGPNV+PGA I+
Sbjct: 454 FAARSVITPDPNLDVEEVGVPDCFAKRLTFPTPVTSFNVCEMRDAVRNGPNVWPGATHIE 513
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEK 112
+G + ++ + R ++AK L+TP + +A + EK
Sbjct: 514 ESNGKKINLNPNDEKSRAAIAKTLLTPFEASSQAAVYEK 552
>gi|197102302|ref|NP_001127373.1| DNA-directed RNA polymerase I subunit RPA1 [Pongo abelii]
gi|55728685|emb|CAH91082.1| hypothetical protein [Pongo abelii]
Length = 1659
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 173/524 (33%), Positives = 277/524 (52%), Gaps = 53/524 (10%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P +SLG+ GLYDLA+GP + + C+TC +++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSK-EVCSTCVQDFSNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELP+ V N L F + LLL+ SC CH + P L + Q+++L+ G + +L
Sbjct: 79 GHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSIL---------AHGTKICDINDYKGGEELRS 297
E L EEN +++ + ++ + I+ AH +C E +S
Sbjct: 139 ERILNRLLEENADPSASEIQEELEQYTAEIVQNNLLGSQGAHVKNVC---------ESKS 189
Query: 298 AFVAQVLSRHV-KRKCIFCATPINAISYQQR-KIIKSF-KIDKDNLDQSLDKSLNKSSNQ 354
+A H+ ++C C T + + + K+ +F + Q + L Q
Sbjct: 190 KLIALFWKAHMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQ 249
Query: 355 IIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDT--TKELIATDIMFIRSLVVPP 412
I ++ GY+ + LW NE FL L +D + + F+ LVVPP
Sbjct: 250 IGKR---GYLTPTSAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPP 306
Query: 413 NNLRPLSM--EQMPPVEHSRNKLYQSILYSCGSLKSVI--MAMKNK-----------EQS 457
+ RP+S +QM + N Q+++ ++ ++ MA + K E+
Sbjct: 307 SRYRPVSRLGDQMFTNGQTVN--LQAVMKDVVLIRKLLALMAQEQKLPEEVAAPTTDEEK 364
Query: 458 DLL----SEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQML 513
D L L + G +L +KL N W LQ +V+++ D++++ + G++Q+L
Sbjct: 365 DSLIAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMD---KLMMDKYPGIRQIL 421
Query: 514 DGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLR 573
+ K G+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR
Sbjct: 422 EKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELR 481
Query: 574 KMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
+ VINGPNV+PGA+M+ NEDGS +S+ QRE++AK+L+TP
Sbjct: 482 QAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTP 525
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 66/87 (75%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 439 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 498
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +S+ QRE++AK+L+TP
Sbjct: 499 NEDGSRTALSAVDMTQREAVAKQLLTP 525
>gi|149036393|gb|EDL91011.1| RNA polymerase 1-4 [Rattus norvegicus]
Length = 1716
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 172/532 (32%), Positives = 274/532 (51%), Gaps = 62/532 (11%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P +SLG+ GLYDLA+GP + + C+TC ++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYVDSLGNPSADGLYDLALGPADSK-EVCSTCVQDFNNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHI+LP+ V N L F + LLL+ SC CH + P + L + Q+K+LD G + +L
Sbjct: 79 GHIDLPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAAIHLLVCQLKVLDVGALQAVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSIL---------AHGTKICDINDYKGGEELRS 297
E L F EE ++ + ++ + IL AH +C E RS
Sbjct: 139 ERILSRFLEETSDPSAFEIQEELEEYTSKILQNNLLGSQGAHVKNVC---------ESRS 189
Query: 298 AFVAQVLSRHVK-RKCIFCATPINAISYQQRKII----------KSFKIDKDNLDQSLDK 346
VA H+ ++C C T + + + + KS + D + L +
Sbjct: 190 KLVAHFWKTHMAAKRCPHCKTGRSVVRKEHNSKLTITYPAMVHKKSGQKDAE-LPEGAPA 248
Query: 347 SLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTT--KELIATDIMF 404
+ Q+ ++ GY+ S + +W NE FL L LD + + F
Sbjct: 249 APGIDEAQMGKR---GYLTPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGPESSFNPSMFF 305
Query: 405 IRSLVVPPNNLRPLSM--EQMPPVEHSRNKLYQSILYSCGSLKSVIMAM----------- 451
+ +VVPP+ RP++ +QM + N Q+++ ++ ++ M
Sbjct: 306 LDFIVVPPSRYRPINRLGDQMFTNGQTVN--LQAVMKDAVLIRKLLAVMAQEQKLPCEMT 363
Query: 452 ------KNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQ 505
+N + L + G +L +KL N W LQ +V+++ D+ ++ +
Sbjct: 364 EITIDKENDSSGAIDRSFLSLLPGQSLTDKLYNIWIRLQSHVNIVFDSDMD---KLMLEK 420
Query: 506 IDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVT 565
G++Q+L+ K G+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVT
Sbjct: 421 YPGIRQILEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVT 480
Query: 566 PWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
PWNV LR+ VINGPNV+PGA+M+ NEDGS +S+ A QRE++AK+L+TP
Sbjct: 481 PWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDATQREAVAKQLLTP 532
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 67/87 (77%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 446 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 505
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +S+ A QRE++AK+L+TP
Sbjct: 506 NEDGSRTALSAVDATQREAVAKQLLTP 532
>gi|348688967|gb|EGZ28781.1| hypothetical protein PHYSODRAFT_322406 [Phytophthora sojae]
Length = 1813
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 172/560 (30%), Positives = 279/560 (49%), Gaps = 67/560 (11%)
Query: 111 EKIITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISER 170
++ I R EV + +Y+D E++ LSV ++ S ++F+SL + + GGLYD A+GP+ +
Sbjct: 6 DQTILRHEVAE--VAFGFYSDAEIRDLSVKQLTSRLSFDSLNNPVVGGLYDPALGPV-DF 62
Query: 171 GDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLF 230
C TC +C GH+GHIELPVPV N + F + LLK CF CHK + + +
Sbjct: 63 NMICPTCHQTQKECPGHLGHIELPVPVYNPVLFGQMLNLLKRKCFTCHKFRVASARSRVV 122
Query: 231 INQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKIC---DIN 287
+I LLD G+ +A L E L + P Q Q+IL ++ N
Sbjct: 123 RVKILLLDNGFENEAAQLSELLEQRNGVEDEPPQRTF---QRQQAILDEYERLALSKSAN 179
Query: 288 DYKGGEEL-----------RSAFVAQVLSRHVKRKCIFCA--TP-----------INAIS 323
+ G +L R + L + +K KC C +P + +S
Sbjct: 180 NTNGKTQLLRPLPRLAEVTREKLAIEFL-KGMKNKCENCGAISPAIRQDANAKIFLKGLS 238
Query: 324 YQQRKIIKSFKID--------KDNLDQSLDKSLNKSSNQIIRKREQGYVMAS-------- 367
+ RK+ +S + + N+ + D+S++ ++ + E Y
Sbjct: 239 ARSRKVNRSKNLTVTSALDTIRGNVSDNGDESMSGDDSESEMENEDKYATTEDSSSRSKY 298
Query: 368 ----EVEADFKKLWTNEHLFLKCLIPVLD------TTKELIATDIMFIRSLVVPPNNLRP 417
EV++ + +W NE ++ L + T ++ F+ + V P+ RP
Sbjct: 299 LPPLEVQSQLQLMWQNEDGLMELLYGDRNIASGRVTGRKADGWRKFFLNVIPVAPSRFRP 358
Query: 418 LSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLN-NKL 476
EH++N I+ +S++ + K Q+ S+ + +N ++
Sbjct: 359 PVFMGDKQFEHAQNSHLSKIMTMS---ESIVQSDYYKRQAATTSDEDDAEKEQQVNLSRK 415
Query: 477 QNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSV 536
W ELQ V+LL+D+ G G+KQ+++ K G+ R++MMGKRVN+A RSV
Sbjct: 416 LALWTELQTAVNLLVDSS---KAKPGTDVAQGIKQVIEKKEGLFRKHMMGKRVNYAARSV 472
Query: 537 ITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSV 596
I+PDPY++ IGVPL FAKTLTYP PVTPWNV +R++VINGP+V+PGAN +++E+G +
Sbjct: 473 ISPDPYISTSQIGVPLRFAKTLTYPQPVTPWNVEEMRQLVINGPDVHPGANFMESENGRL 532
Query: 597 VRISSSQAVQRESLAKRLIT 616
+ +S QRE+++K L+T
Sbjct: 533 IDLSKRTPHQREAISKTLLT 552
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 68/86 (79%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDPY++ IGVPL FAKTLTYP PVTPWNV +R++VINGP+V+PGAN ++
Sbjct: 467 YAARSVISPDPYISTSQIGVPLRFAKTLTYPQPVTPWNVEEMRQLVINGPDVHPGANFME 526
Query: 74 NEDGSVVRISSSQAVQRESLAKRLIT 99
+E+G ++ +S QRE+++K L+T
Sbjct: 527 SENGRLIDLSKRTPHQREAISKTLLT 552
>gi|13929086|ref|NP_113960.1| DNA-directed RNA polymerase I subunit RPA1 [Rattus norvegicus]
gi|3914802|sp|O54889.1|RPA1_RAT RecName: Full=DNA-directed RNA polymerase I subunit RPA1; Short=RNA
polymerase I subunit A1; AltName: Full=DNA-directed RNA
polymerase I largest subunit; AltName: Full=DNA-directed
RNA polymerase I subunit A; AltName: Full=RNA polymerase
I 194 kDa subunit; Short=A194; Short=RPA194
gi|2739050|gb|AAB94601.1| RNA polymerase I 194 kDa subunit [Rattus norvegicus]
Length = 1716
Score = 256 bits (654), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 172/532 (32%), Positives = 274/532 (51%), Gaps = 62/532 (11%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P +SLG+ GLYDLA+GP + + C+TC ++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYVDSLGNPSADGLYDLALGPADSK-EVCSTCVQDFNNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHI+LP+ V N L F + LLL+ SC CH + P + L + Q+K+LD G + +L
Sbjct: 79 GHIDLPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAAIHLLVCQLKVLDVGALQAVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSIL---------AHGTKICDINDYKGGEELRS 297
E L F EE ++ + ++ + IL AH +C E RS
Sbjct: 139 ERILSRFLEETSDPSAFEIQEELEEYTSKILQNNLLGSQGAHVKNVC---------ESRS 189
Query: 298 AFVAQVLSRHVK-RKCIFCATPINAISYQQRKII----------KSFKIDKDNLDQSLDK 346
VA H+ ++C C T + + + + KS + D + L +
Sbjct: 190 KLVAHFWKTHMAAKRCPHCKTGRSVVRKEHNSKLTITYPAMVHKKSGQKDAE-LPEGAPA 248
Query: 347 SLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTT--KELIATDIMF 404
+ Q+ ++ GY+ S + +W NE FL L LD + + F
Sbjct: 249 APGIDEAQMGKR---GYLTPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGPESSFNPSMFF 305
Query: 405 IRSLVVPPNNLRPLSM--EQMPPVEHSRNKLYQSILYSCGSLKSVIMAM----------- 451
+ +VVPP+ RP++ +QM + N Q+++ ++ ++ M
Sbjct: 306 LDFIVVPPSRYRPINRLGDQMFTNGQTVN--LQAVMKDAVLIRKLLAVMAQEQKLPCEMT 363
Query: 452 ------KNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQ 505
+N + L + G +L +KL N W LQ +V+++ D+ ++ +
Sbjct: 364 EITIDKENDSSGAIDRSFLSLLPGQSLTDKLYNIWIRLQSHVNIVFDSDMD---KLMLEK 420
Query: 506 IDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVT 565
G++Q+L+ K G+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVT
Sbjct: 421 YPGIRQILEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVT 480
Query: 566 PWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
PWNV LR+ VINGPNV+PGA+M+ NEDGS +S+ A QRE++AK+L+TP
Sbjct: 481 PWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDATQREAVAKQLLTP 532
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 67/87 (77%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 446 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 505
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +S+ A QRE++AK+L+TP
Sbjct: 506 NEDGSRTALSAVDATQREAVAKQLLTP 532
>gi|291386403|ref|XP_002709704.1| PREDICTED: DNA-directed RNA polymerase I A isoform 2 [Oryctolagus
cuniculus]
Length = 1720
Score = 255 bits (651), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 174/530 (32%), Positives = 277/530 (52%), Gaps = 58/530 (10%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P +SLG+ GLYDLA+GP + + C TC ++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYVDSLGNPSANGLYDLALGPADSK-EVCATCVQDFNNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELP+ V N L F + LLL+ SC CH + P L Q+++L+ G + +L
Sbjct: 79 GHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLFCQLRVLEVGALQAVFEL 138
Query: 249 EETL--FNEEN-----------LRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEEL 295
E L F EEN L + A++VQ ++ + S AH +C E
Sbjct: 139 ERILNRFLEENADPSAFEIQEELEKYTAEIVQ--NNLLGSQGAHVKNVC---------ES 187
Query: 296 RSAFVAQVLSRHV-KRKCIFCATPINAISYQQRK---IIKSFKIDKDNLDQSLDKSLNKS 351
RS +A H+ ++C C T + + + I + K Q +K
Sbjct: 188 RSKLIAYFWKTHMTAKRCPHCKTGRSVVRKEHNSKLTITYPAIVHKKAGQQDSEKPTRIP 247
Query: 352 SNQIIRKRE---QGYVMASEVEADFKKLWTNEHLFLKCLIPVLDT--TKELIATDIMFIR 406
I + + +GY+ + +W NE FL L LD T+ + F+
Sbjct: 248 QTPGIEESQMGKRGYLTPNSAREHLFAIWKNEGFFLNYLFSGLDDVGTESGFNPAVFFLD 307
Query: 407 SLVVPPNNLRPLSM--EQMPPVEHSRNKLYQSILYSCGSLKSVIMAM------------- 451
+VVPP+ RP++ +QM + N Q+++ ++ ++ M
Sbjct: 308 FMVVPPSRYRPVNRLGDQMFTNGQTVN--LQAVMKDVVLIRKLLALMAQEQKLPCEVALP 365
Query: 452 ---KNKEQSDLLSEA-LKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQID 507
++K+ S + + L + G +L +KL N W LQ +V+++ D++++ +
Sbjct: 366 VTEEDKDTSVAVDRSFLSALPGQSLTDKLYNIWIRLQSHVNIVFDSEMD---KLMMEKYP 422
Query: 508 GLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPW 567
G++Q+L+ K G+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPW
Sbjct: 423 GIRQILEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPW 482
Query: 568 NVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
NV LR+ VINGPNV+PGA+M+ NEDGS +S++ QRE++AK+L+TP
Sbjct: 483 NVQELRQAVINGPNVHPGASMVINEDGSRTALSATDVTQREAVAKQLLTP 532
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 67/87 (77%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 446 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 505
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +S++ QRE++AK+L+TP
Sbjct: 506 NEDGSRTALSATDVTQREAVAKQLLTP 532
>gi|344297574|ref|XP_003420472.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I
subunit RPA1-like [Loxodonta africana]
Length = 1711
Score = 255 bits (651), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 172/523 (32%), Positives = 272/523 (52%), Gaps = 51/523 (9%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P +SLG+ GLYDLA+GP + + C+TC ++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYLDSLGNPSVNGLYDLALGPADSK-EVCSTCVQDFNNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELP+ V N L F + LLL+ SC CH + P L + Q+K+L+ + +L
Sbjct: 79 GHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVVHLLVCQLKVLEVXALQAVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSIL---------AHGTKICDINDYKGGEELRS 297
E L F EEN ++ + ++ + I+ AH +C E RS
Sbjct: 139 EHILSRFLEENSDPSAFEIQEELEQYTAKIVQNNLLGPQGAHVKNVC---------ESRS 189
Query: 298 AFVAQVLSRHVK-RKCIFCATPINAISYQQ-RKIIKSFKIDKDNLDQSLDKSLNKSSNQI 355
VA H+ ++C C T + + + K+ ++ D +
Sbjct: 190 KLVAHFWKTHMSAKRCPHCKTGRSVVRKEHNSKLTITYPAIAHKKSNQKDAETPGIEDAQ 249
Query: 356 IRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTT--KELIATDIMFIRSLVVPPN 413
+ KR GY+ + LW NE FL L L+ + + F+ LVVPP+
Sbjct: 250 LGKR--GYLTPTSAREHLITLWENEGFFLNYLFLGLEDVGMESRFNPSMFFLDFLVVPPS 307
Query: 414 NLRPLSM--EQMPPVEHSRNKLYQSILYSCGSLKSVIMAM----------------KNKE 455
RP+S +QM + N Q+++ ++ ++ M + K+
Sbjct: 308 RYRPVSRLGDQMFTNGQTVN--LQAVMKDIVLIRKLLALMAQEQKLPYEVAAPATDEEKD 365
Query: 456 QSDLLSEALKGIR-GDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLD 514
S ++ + I G +L +KL N W LQ +V+++ D++++ + G++Q+L+
Sbjct: 366 SSIVMDRSFLSILPGQSLTDKLYNIWIRLQSHVNIVFDSEMD---KLMMEKYPGIRQILE 422
Query: 515 GKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRK 574
K G+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+
Sbjct: 423 KKDGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQ 482
Query: 575 MVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
VINGPNV+PGA+M+ NEDGS +S+S QRE++AK+L+TP
Sbjct: 483 AVINGPNVHPGASMVINEDGSRTALSASDLTQREAVAKQLLTP 525
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 67/87 (77%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 439 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 498
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +S+S QRE++AK+L+TP
Sbjct: 499 NEDGSRTALSASDLTQREAVAKQLLTP 525
>gi|301786528|ref|XP_002928679.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like
[Ailuropoda melanoleuca]
Length = 1716
Score = 255 bits (651), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 175/528 (33%), Positives = 280/528 (53%), Gaps = 61/528 (11%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ E+K+LSV + +P +SLG+ GLYDLA+GP + + C+TC ++ C GH+
Sbjct: 20 YSADELKKLSVKSITNPRYLDSLGNPSVNGLYDLALGPADSK-EVCSTCVQDFNNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELP+ V N L F + LLL+ SC CH + P L + Q+++L+ G + +L
Sbjct: 79 GHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLVCQLRVLEVGALQAVYEL 138
Query: 249 EETL--FNEEN-----------LRLHPAQLVQ--LVDSHVQSILAHGTKICDINDYKGGE 293
E L F EEN L + A++VQ L+ SH AH +C
Sbjct: 139 ERILNRFLEENADPTAFEIQEELEQYTAKIVQNNLLGSHG----AHVKNVC--------- 185
Query: 294 ELRSAFVAQVLSRHV-KRKCIFCATPINAISYQQR-KIIKSF-KIDKDNLDQSLDKSLNK 350
E +S +A H+ ++C C T + + + K+ ++ + +Q + L
Sbjct: 186 ESKSKLIAYFWKTHMTAKRCPHCKTGRSVVRKEHNSKLTVTYPAMVHKKANQKDTEPLGI 245
Query: 351 SSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTT--KELIATDIMFIRSL 408
Q+ ++ GY+ + LW NE FL L L+ + + F+ L
Sbjct: 246 EEAQMGKR---GYLTPTSAREHLTALWKNEGFFLNYLFSGLENVDMESRFNPSMFFLDFL 302
Query: 409 VVPPNNLRPLSM--EQMPPVEHSRNKLYQSILYSCGSLKSVIMAM--------------- 451
VVPP+ RP++ +QM + N Q+++ ++ ++ M
Sbjct: 303 VVPPSRYRPVNRLGDQMFTNGQTVN--LQAVMKDMVLIRKLLALMAQEQELPCEVAAPAK 360
Query: 452 -KNKEQSDLLSEA-LKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGL 509
++K+ S +L + L + G +L +KL N W LQ +V+++ D++++ + G+
Sbjct: 361 DEDKDSSVVLDRSFLSMLPGQSLTDKLYNIWIRLQSHVNIVFDSEMD---KLMMEKYPGI 417
Query: 510 KQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNV 569
+Q+L+ K G+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV
Sbjct: 418 RQILEKKDGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNV 477
Query: 570 TLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
LR+ VINGPNV+PGA+M+ NEDGS +S+ QRE++AK+L+TP
Sbjct: 478 QELRQAVINGPNVHPGASMVINEDGSRTALSAVNLTQREAVAKQLLTP 525
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 66/87 (75%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 439 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 498
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +S+ QRE++AK+L+TP
Sbjct: 499 NEDGSRTALSAVNLTQREAVAKQLLTP 525
>gi|410955237|ref|XP_003984263.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Felis catus]
Length = 1718
Score = 254 bits (650), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 170/519 (32%), Positives = 271/519 (52%), Gaps = 43/519 (8%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ E+K+LSV + +P +SLG+ GLYDLA+GP + + C+TC ++ C GH+
Sbjct: 20 YSADELKKLSVKSITNPRYLDSLGNPSVNGLYDLALGPADSK-EVCSTCVQDFNSCPGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELP+ V N L F + LLL+ SC CH + P L + Q+++L+ G + +L
Sbjct: 79 GHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLVCQLRVLEVGALQAVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSIL------AHGTKICDINDYKGGEELRSAFV 300
E L F EEN ++ + ++ + I+ +HG + ++ E RS +
Sbjct: 139 ERILNRFLEENADPTAFEIQEELEQYTTHIVQNNLLGSHGAHVKNVC------ESRSKLI 192
Query: 301 AQVLSRHVK-RKCIFCATPINAI--SYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIR 357
A H+ ++C C T + + + + I + DQ + L Q+ +
Sbjct: 193 ASFWKAHMSAKRCPHCKTGRSVVRKEHNSKLTITYPAMVHRKADQKDTEPLGIEDAQMGK 252
Query: 358 KREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTT--KELIATDIMFIRSLVVPPNNL 415
+ GY+ + LW NE FL L L+ + + F+ LVVPP+
Sbjct: 253 R---GYLTPTSAREHLIALWKNEGFFLNYLFLGLEDVGMESRFNPSMFFLDFLVVPPSRY 309
Query: 416 RPLSM--EQMPPVEHSRN-----------KLYQSILYSCGSLKSVIMAMKNKEQSD---- 458
RP++ +QM + N + +++ L + A E+ D
Sbjct: 310 RPVNRLGDQMFTNGQTVNLQAVMKDMVLIRKLLALMAQEQELPCEVAAPAKDEEKDSSIA 369
Query: 459 LLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTG 518
L L + G +L +KL N W LQ +V+++ D++++ + G++Q+L+ K G
Sbjct: 370 LDRSFLSTLPGQSLTDKLYNIWIRLQSHVNIVFDSEMD---KLMMEKYPGIRQILEKKDG 426
Query: 519 MIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVIN 578
+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VIN
Sbjct: 427 LFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVIN 486
Query: 579 GPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
GPNV+PGA+M+ NEDGS +S+ QRE++AK+L+TP
Sbjct: 487 GPNVHPGASMVINEDGSRTALSAVDLTQREAVAKQLLTP 525
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 66/87 (75%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 439 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 498
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +S+ QRE++AK+L+TP
Sbjct: 499 NEDGSRTALSAVDLTQREAVAKQLLTP 525
>gi|33416841|gb|AAH55500.1| Polr1a protein, partial [Danio rerio]
Length = 810
Score = 254 bits (650), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 174/523 (33%), Positives = 276/523 (52%), Gaps = 43/523 (8%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNY 181
E + ++ E ++LSV + +P +++G+ GLYDLA+GP ++ + C+TC ++
Sbjct: 13 EGMSFGLFSADETRKLSVKTITNPQLLDNVGNAAANGLYDLALGP-ADNKEICSTCMQDF 71
Query: 182 TKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGY 241
+ C GH GHIELP+PV N LFF + LL++ SC CH + P + L + Q+KLLD G
Sbjct: 72 SSCPGHFGHIELPLPVYNPLFFDKLYLLIRGSCLSCHTLKCPRAAIHLLLCQLKLLDVGA 131
Query: 242 VTQAKDLEETL--FNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAF 299
+ + ++E L F E N ++ + ++ V+ IL + K E +S+
Sbjct: 132 MKEVFEIENVLNQFLESNPSPPGEEIQETLNDFVKPILETRKDKQHTDPVKHICEKKSSL 191
Query: 300 VAQVLSRHVK-RKCIFC-ATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIR 357
+ H+ +KC C A + K+I + + K +Q D L K
Sbjct: 192 ITSFWRIHMGPKKCQNCKANRMTVRKEHNSKLIVTQTLHKKASEQDDDSQLTK------- 244
Query: 358 KREQGYVMASEVEADFKKLWTNEHLFLKCLIPV--LDTTKELIATDIMFIRSLVVPPNNL 415
+ ++ S KLW E FLK L +D + ++ F+ LVVPP
Sbjct: 245 ---RIFLTPSVAREHIIKLWETEGFFLKHLFSGFDMDNSDNGFNPEVFFLELLVVPPCRY 301
Query: 416 RPLSM--EQMPPVEHSRNKLYQSILYS---CGSLKSVIMAMKNK---------EQS---- 457
RP++ +QM + N Q++L L ++I K K EQS
Sbjct: 302 RPINRLGDQMFTNGQTVN--MQAVLKDGLIIQKLLTLIADEKTKAIEGTQTGLEQSSEAP 359
Query: 458 ---DLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLD 514
++ L I+G TL +KL ++W LQ V+++ D+ ++ T + G++Q+L+
Sbjct: 360 KVTEIDQSFLTSIQGVTLTDKLYSTWIHLQSLVNIVFDSDMDKLIT---EKFPGVRQLLE 416
Query: 515 GKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRK 574
K G+ R++MMGKRV++A RSVI PD Y+ + IG+P+ FA LTYP PVTPWNV +R+
Sbjct: 417 KKEGLFRKHMMGKRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKEMRQ 476
Query: 575 MVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
V+NGPN++PGA M+ NEDGS +SS+ QRE++AK+L+TP
Sbjct: 477 AVLNGPNIHPGATMVVNEDGSRTILSSTNQTQREAVAKQLLTP 519
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 53/97 (54%), Positives = 70/97 (72%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+ + IG+P+ FA LTYP PVTPWNV +R+ V+NGPN++PGA M+
Sbjct: 433 YAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKEMRQAVLNGPNIHPGATMVV 492
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMK 110
NEDGS +SS+ QRE++AK+L+TP QHR MK
Sbjct: 493 NEDGSRTILSSTNQTQREAVAKQLLTPSTGQHRIPMK 529
>gi|4096591|gb|AAC99959.1| DNA-directed RNA polymerase I, largest subunit [Homo sapiens]
Length = 1717
Score = 254 bits (650), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 173/524 (33%), Positives = 276/524 (52%), Gaps = 53/524 (10%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P +SLG+ GLYDLA+GP + + C+TC +++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSK-EVCSTCVQDFSNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELP+ V N L F + LLL+ SC CH + P L + Q+++L+ G + +L
Sbjct: 79 GHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSIL---------AHGTKICDINDYKGGEELRS 297
E L F EEN +++ + ++ + I+ AH +C E +S
Sbjct: 139 ERILSRFLEENADPSASEIREELEQYTTEIVQNNLLGSQGAHVKNVC---------ESKS 189
Query: 298 AFVAQVLSRHV-KRKCIFCATPINAISYQQ-RKIIKSF-KIDKDNLDQSLDKSLNKSSNQ 354
+A H+ ++C C T + + + K+ +F + Q + L Q
Sbjct: 190 KLIALFWKAHMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQ 249
Query: 355 IIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDT--TKELIATDIMFIRSLVVPP 412
I ++ GY+ + LW NE FL L +D + + F+ LVVPP
Sbjct: 250 IGKR---GYLTPTSAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPP 306
Query: 413 NNLRPLSM--EQMPPVEHSRNKLYQSILYSCGSLKSVI--MAMKNK-----------EQS 457
+ RP+S +QM + N Q+++ ++ ++ MA + K E+
Sbjct: 307 SRSRPVSRLGDQMFTNGQTVN--LQAVMKDVVLIRKLLALMAQEQKLPEEVATPTTDEEK 364
Query: 458 DLL----SEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQML 513
D L L + G +L +KL N W LQ +V+++ D++++ + G++Q+L
Sbjct: 365 DSLIAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMD---KLMRDKYPGIRQIL 421
Query: 514 DGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLR 573
+ K G+ R++MMGKRV+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR
Sbjct: 422 EKKEGLFRKHMMGKRVDSTARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELR 481
Query: 574 KMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
+ VINGPNV+PGA+M+ NEDGS +S+ QRE++AK+L+TP
Sbjct: 482 QAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTP 525
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/84 (60%), Positives = 65/84 (77%)
Query: 17 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 76
RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+ NED
Sbjct: 442 RSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINED 501
Query: 77 GSVVRISSSQAVQRESLAKRLITP 100
GS +S+ QRE++AK+L+TP
Sbjct: 502 GSRTALSAVDMTQREAVAKQLLTP 525
>gi|292620699|ref|XP_001922839.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Danio rerio]
Length = 1693
Score = 254 bits (650), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 176/523 (33%), Positives = 278/523 (53%), Gaps = 43/523 (8%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNY 181
E + ++ E ++LSV + +P +++G+ GLYDLA+GP ++ + C+TC ++
Sbjct: 13 EGMSFGLFSADETRKLSVKTITNPQLLDNVGNAAANGLYDLALGP-ADNKEICSTCMQDF 71
Query: 182 TKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGY 241
+ C GH GHIELP+PV N LFF + LL++ SC CH + P + L + Q+KLLD G
Sbjct: 72 SSCPGHFGHIELPLPVYNPLFFDKLYLLIRGSCLSCHILKCPRAAIHLLLCQLKLLDVGA 131
Query: 242 VTQAKDLEETL--FNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAF 299
+ + ++E L F E N ++ + ++ V+ IL + K E +S+
Sbjct: 132 MKEVFEIENVLNQFLESNPSPPGEEIQETLNDFVKPILETRKDKQHTDPVKHICEKKSSL 191
Query: 300 VAQVLSRHVK-RKCIFC-ATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIR 357
+ H+ +KC C A + K+I + + K +Q D L K
Sbjct: 192 ITSFWRIHMGPKKCQNCKANRMTVRKEHNSKLIVTQTLHKKASEQDDDSQLTK------- 244
Query: 358 KREQGYVMASEVEADFKKLWTNEHLFLKCLIPV--LDTTKELIATDIMFIRSLVVPPNNL 415
+ ++ S KLW E FLK L +D + ++ F+ LVVPP
Sbjct: 245 ---RIFLTPSVAREHIIKLWETEGFFLKHLFSGFDMDNSDNGFNPEVFFLELLVVPPCRY 301
Query: 416 RPLSM--EQMPPVEHSRNKLYQSILYS---CGSLKSVIMAMKNKE----QSDL--LSEA- 463
RP++ +QM + N Q++L L ++I K K Q++L SEA
Sbjct: 302 RPINRLGDQMFTNGQTVN--MQAVLKDGLIIQKLLTLIADEKTKAIEGTQTELEQSSEAP 359
Query: 464 ---------LKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLD 514
L I+G TL +KL ++W LQ V+++ D+ ++ T + G++Q+L+
Sbjct: 360 KVTEIDQSFLTSIQGVTLTDKLYSTWIHLQSLVNIVFDSDMDKLIT---EKFPGVRQLLE 416
Query: 515 GKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRK 574
K G+ R++MMGKRV++A RSVI PD Y+ + IG+P+ FA LTYP PVTPWNV +R+
Sbjct: 417 KKEGLFRKHMMGKRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKEMRQ 476
Query: 575 MVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
V+NGPN++PGA M+ NEDGS +SS+ QRE++AK+L+TP
Sbjct: 477 AVLNGPNIHPGATMVVNEDGSRTILSSTNQTQREAVAKQLLTP 519
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 53/97 (54%), Positives = 70/97 (72%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+ + IG+P+ FA LTYP PVTPWNV +R+ V+NGPN++PGA M+
Sbjct: 433 YAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKEMRQAVLNGPNIHPGATMVV 492
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMK 110
NEDGS +SS+ QRE++AK+L+TP QHR MK
Sbjct: 493 NEDGSRTILSSTNQTQREAVAKQLLTPSTGQHRIPMK 529
>gi|402891470|ref|XP_003908969.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Papio
anubis]
Length = 1720
Score = 254 bits (649), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 172/524 (32%), Positives = 275/524 (52%), Gaps = 53/524 (10%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P +SLG+ GLYDLA+GP + + C+TC ++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSK-EVCSTCVQDFNNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELP+ V N L F + LLL+ SC CH + P L + Q+++L+ G + +L
Sbjct: 79 GHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSIL---------AHGTKICDINDYKGGEELRS 297
E L F EEN +++ + ++ + I+ AH +C E +S
Sbjct: 139 ERILNRFLEENADPSASEIQEELEQYTAEIVQNNLLGSQGAHVKNVC---------ESKS 189
Query: 298 AFVAQVLSRHV-KRKCIFCATPINAISYQQR-KIIKSF-KIDKDNLDQSLDKSLNKSSNQ 354
A H+ ++C C T + + + K+ +F + Q + L Q
Sbjct: 190 KLTAVFWKAHMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQ 249
Query: 355 IIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDT--TKELIATDIMFIRSLVVPP 412
+ ++ GY+ + LW NE FL L +D + + F+ LVVPP
Sbjct: 250 MGKR---GYLTPTSAREHLFALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPP 306
Query: 413 NNLRPLSM--EQMPPVEHSRNKLYQSILYSCGSLKSVI--MAMKNK-----------EQS 457
+ RP+S +QM + N Q+++ ++ ++ MA + K E+
Sbjct: 307 SRYRPVSRLGDQMFTNGQTVN--LQAVMKDVVLIRKLLALMAQEQKLPEEVAAPPPDEEK 364
Query: 458 DLL----SEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQML 513
D L L + G + +KL N W LQ +V+++ D++++ + G++Q+L
Sbjct: 365 DSLIAIDRSFLSTLPGQSFIDKLYNIWIRLQSHVNIVFDSEMD---KLMMDKYPGIRQIL 421
Query: 514 DGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLR 573
+ K G+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR
Sbjct: 422 EKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELR 481
Query: 574 KMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
+ VINGPNV+PGA+M+ NEDGS +S+ QRE++AK+L+TP
Sbjct: 482 QAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTP 525
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 66/87 (75%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 439 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 498
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +S+ QRE++AK+L+TP
Sbjct: 499 NEDGSRTALSAVDMTQREAVAKQLLTP 525
>gi|355565864|gb|EHH22293.1| hypothetical protein EGK_05529 [Macaca mulatta]
Length = 1720
Score = 254 bits (649), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 172/524 (32%), Positives = 275/524 (52%), Gaps = 53/524 (10%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P +SLG+ GLYDLA+GP + + C+TC ++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSK-EVCSTCVQDFNNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELP+ V N L F + LLL+ SC CH + P L + Q+++L+ G + +L
Sbjct: 79 GHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSIL---------AHGTKICDINDYKGGEELRS 297
E L F EEN +++ + ++ + I+ AH +C E +S
Sbjct: 139 ERILNRFLEENADPSASEIQEELEQYTAEIVQNNLLGSQGAHVKNVC---------ESKS 189
Query: 298 AFVAQVLSRHV-KRKCIFCATPINAISYQQR-KIIKSF-KIDKDNLDQSLDKSLNKSSNQ 354
A H+ ++C C T + + + K+ +F + Q + L Q
Sbjct: 190 KLTAVFWKAHMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQ 249
Query: 355 IIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDT--TKELIATDIMFIRSLVVPP 412
+ ++ GY+ + LW NE FL L +D + + F+ LVVPP
Sbjct: 250 MGKR---GYLTPTSAREHLFALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPP 306
Query: 413 NNLRPLSM--EQMPPVEHSRNKLYQSILYSCGSLKSVI--MAMKNK-----------EQS 457
+ RP+S +QM + N Q+++ ++ ++ MA + K E+
Sbjct: 307 SRYRPVSRLGDQMFTNGQTVN--LQAVMKDVVLIRKLLALMAQEQKLPEEVAAPPPDEEK 364
Query: 458 DLL----SEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQML 513
D L L + G + +KL N W LQ +V+++ D++++ + G++Q+L
Sbjct: 365 DSLIAIDRSFLSTLPGQSFIDKLYNIWIRLQSHVNIVFDSEMD---KLMMDKYPGIRQIL 421
Query: 514 DGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLR 573
+ K G+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR
Sbjct: 422 EKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELR 481
Query: 574 KMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
+ VINGPNV+PGA+M+ NEDGS +S+ QRE++AK+L+TP
Sbjct: 482 QAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTP 525
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 66/87 (75%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 439 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 498
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +S+ QRE++AK+L+TP
Sbjct: 499 NEDGSRTALSAVDMTQREAVAKQLLTP 525
>gi|355762289|gb|EHH61926.1| hypothetical protein EGM_20072 [Macaca fascicularis]
Length = 1720
Score = 254 bits (649), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 172/524 (32%), Positives = 275/524 (52%), Gaps = 53/524 (10%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P +SLG+ GLYDLA+GP + + C+TC ++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSK-EVCSTCVQDFNNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELP+ V N L F + LLL+ SC CH + P L + Q+++L+ G + +L
Sbjct: 79 GHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSIL---------AHGTKICDINDYKGGEELRS 297
E L F EEN +++ + ++ + I+ AH +C E +S
Sbjct: 139 ERILNRFLEENADPSASEIQEELEQYTAEIVQNNLLGSQGAHVKNVC---------ESKS 189
Query: 298 AFVAQVLSRHV-KRKCIFCATPINAISYQQR-KIIKSF-KIDKDNLDQSLDKSLNKSSNQ 354
A H+ ++C C T + + + K+ +F + Q + L Q
Sbjct: 190 KLTAVFWKAHMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQ 249
Query: 355 IIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDT--TKELIATDIMFIRSLVVPP 412
+ ++ GY+ + LW NE FL L +D + + F+ LVVPP
Sbjct: 250 MGKR---GYLTPTSAREHLFALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPP 306
Query: 413 NNLRPLSM--EQMPPVEHSRNKLYQSILYSCGSLKSVI--MAMKNK-----------EQS 457
+ RP+S +QM + N Q+++ ++ ++ MA + K E+
Sbjct: 307 SRYRPVSRLGDQMFTNGQTVN--LQAVMKDVVLIRKLLALMAQEQKLPEEVAAPPPDEEK 364
Query: 458 DLL----SEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQML 513
D L L + G + +KL N W LQ +V+++ D++++ + G++Q+L
Sbjct: 365 DSLIAIDRSFLSTLPGQSFIDKLYNIWIRLQSHVNIVFDSEMD---KLMMDKYPGIRQIL 421
Query: 514 DGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLR 573
+ K G+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR
Sbjct: 422 EKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELR 481
Query: 574 KMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
+ VINGPNV+PGA+M+ NEDGS +S+ QRE++AK+L+TP
Sbjct: 482 QAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTP 525
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 66/87 (75%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 439 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 498
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +S+ QRE++AK+L+TP
Sbjct: 499 NEDGSRTALSAVDMTQREAVAKQLLTP 525
>gi|301118334|ref|XP_002906895.1| DNA-directed RNA polymerase I subunit RPA1, putative [Phytophthora
infestans T30-4]
gi|262108244|gb|EEY66296.1| DNA-directed RNA polymerase I subunit RPA1, putative [Phytophthora
infestans T30-4]
Length = 1811
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 174/561 (31%), Positives = 281/561 (50%), Gaps = 68/561 (12%)
Query: 111 EKIITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISER 170
++ I R EV + +Y+D E++ LSV ++ S ++F+SL + + GGLYD A+GP+ +
Sbjct: 6 DQTILRHEVAE--VAFGFYSDAEIRDLSVKQLTSRLSFDSLNNPVVGGLYDPALGPV-DF 62
Query: 171 GDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLF 230
C TC +C GH+GHIELPVPV N + F + LLK CF CHK + + +
Sbjct: 63 NMICPTCHQTQKECPGHLGHIELPVPVYNPVLFGQMLNLLKRKCFTCHKFRVASARSRVV 122
Query: 231 INQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLV-----QLVDSHVQSILAHGTKICD 285
+I LLD G+ +A L E L + P Q ++D + + LA I
Sbjct: 123 RVKILLLDNGFDNEAGQLGELLEQRNGVEDEPPQRTFQRQQAILDEYER--LALSKSITS 180
Query: 286 INDY--------KGGEELRSAFVAQVLSRHVKRKCIFCA--TP-----------INAISY 324
N + E R V + L + +K KC C +P + +S
Sbjct: 181 TNGKTQLLRPLPRVAEVTREKLVIEFL-KSMKNKCENCGAISPAIRQDANAKIFLKGLSA 239
Query: 325 QQRKIIKSFKID--------KDNLDQSLDKSLN-KSSNQIIRKREQGYVMAS-------- 367
+ RK+ +S + + N+ + D+++N S + E Y
Sbjct: 240 RSRKVNRSKNLTVTSALDTIRGNVSDNKDENMNGDDSESELEDDEDTYAATEDSSSRSKF 299
Query: 368 ----EVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDI------MFIRSLVVPPNNLRP 417
EV++ + +W NE ++ L + ++ F+ + V P+ RP
Sbjct: 300 LPPLEVQSQLQLMWQNEDGLMEMLYGDRNIASGRVSGRKPDGWRKFFLNVIPVAPSRFRP 359
Query: 418 LSMEQMPPVEHSRNKLYQSIL-YSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLN-NK 475
EH++N I+ YS +S++ + K Q+ S+ + + +N ++
Sbjct: 360 PVFMGDKQFEHAQNSHLSKIMTYS----ESIVQSDYYKRQAATTSDEDDAEKEEQVNLSR 415
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRS 535
W ELQ V+LL+D+ G G+KQ+++ K G+ R++MMGKRVN+A RS
Sbjct: 416 KLALWTELQNAVNLLVDSS---KAKPGTDVAQGIKQVIEKKEGLFRKHMMGKRVNYAARS 472
Query: 536 VITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGS 595
VI+PDPY++ IGVPL FAKTLTYP PVTPWNV +R++VINGP+V+PG+N +++E+G
Sbjct: 473 VISPDPYISTSQIGVPLRFAKTLTYPQPVTPWNVEEMRQLVINGPDVHPGSNFVESENGR 532
Query: 596 VVRISSSQAVQRESLAKRLIT 616
++ +S QRE+++K L+T
Sbjct: 533 LIDLSKRTPHQREAISKTLLT 553
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 47/86 (54%), Positives = 68/86 (79%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDPY++ IGVPL FAKTLTYP PVTPWNV +R++VINGP+V+PG+N ++
Sbjct: 468 YAARSVISPDPYISTSQIGVPLRFAKTLTYPQPVTPWNVEEMRQLVINGPDVHPGSNFVE 527
Query: 74 NEDGSVVRISSSQAVQRESLAKRLIT 99
+E+G ++ +S QRE+++K L+T
Sbjct: 528 SENGRLIDLSKRTPHQREAISKTLLT 553
>gi|332239236|ref|XP_003268812.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I
subunit RPA1 [Nomascus leucogenys]
Length = 1723
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 173/522 (33%), Positives = 271/522 (51%), Gaps = 49/522 (9%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P +SLG+ GLYDLA+GP + + C+TC +++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSK-EVCSTCVQDFSNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELP+ V N L F + LLL+ SC CH + P L + Q+++L+ G + +L
Sbjct: 79 GHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSIL---------AHGTKICDINDYKGGEELRS 297
E L F EEN ++ + ++ + I+ AH +C E +S
Sbjct: 139 ERILNRFLEENADPSACEIQEELEQYTTEIVQNNLLGSQGAHVKNVC---------ESKS 189
Query: 298 AFVAQVLSRHV-KRKCIFCATPINAISYQQR-KIIKSF-KIDKDNLDQSLDKSLNKSSNQ 354
+A H+ ++C C T + + + K+ +F + Q + L Q
Sbjct: 190 KLIALFWKAHMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQ 249
Query: 355 IIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDT--TKELIATDIMFIRSLVVPP 412
++ GY+ + LW NE FL L +D + + F+ LVVPP
Sbjct: 250 TGKR---GYLTPTSAREHLSALWKNEGFFLNYLFSGMDDDDMESRFNPSVFFLDFLVVPP 306
Query: 413 NNLRPLSM--EQMPPVEHSRN--------KLYQSILYSCGS---LKSVIMAMKNKEQSDL 459
+ RP+S +QM + N L Q +L L + A E+ D
Sbjct: 307 SRYRPVSRLGDQMFTNGQTVNLQAVMKDVVLIQKLLALMAQEQKLPEEVAAPTTDEEKDS 366
Query: 460 L----SEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDG 515
L L + G +L +KL N W LQ +V+++ D++++ + G++Q+L+
Sbjct: 367 LIAIDRSFLSILPGQSLIDKLYNIWIRLQSHVNIVFDSEMD---KLMMDKYPGIRQILEK 423
Query: 516 KTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKM 575
K G+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+
Sbjct: 424 KEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQA 483
Query: 576 VINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
VINGPNV+PGA+++ NEDGS +S+ QRE++AK+L+TP
Sbjct: 484 VINGPNVHPGASVVINEDGSRTALSAVDMTQREAVAKQLLTP 525
Score = 112 bits (281), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 66/87 (75%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+++
Sbjct: 439 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASVVI 498
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +S+ QRE++AK+L+TP
Sbjct: 499 NEDGSRTALSAVDMTQREAVAKQLLTP 525
>gi|383417301|gb|AFH31864.1| DNA-directed RNA polymerase I subunit RPA1 [Macaca mulatta]
Length = 1720
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 172/524 (32%), Positives = 275/524 (52%), Gaps = 53/524 (10%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P +SLG+ GLYDLA+GP + + C+TC ++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSK-EVCSTCVQDFNNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELP+ V N L F + LLL+ SC CH + P L + Q+++L+ G + +L
Sbjct: 79 GHIELPLTVYNPLLFDKLYLLLRGSCLNCHLLTCPRAVIHLLLCQLRVLEVGALQAVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSIL---------AHGTKICDINDYKGGEELRS 297
E L F EEN +++ + ++ + I+ AH +C E +S
Sbjct: 139 ERILNRFLEENADPSASEIQEELEQYTAEIVQNNLLGSQGAHVKNVC---------ESKS 189
Query: 298 AFVAQVLSRHV-KRKCIFCATPINAISYQQR-KIIKSF-KIDKDNLDQSLDKSLNKSSNQ 354
A H+ ++C C T + + + K+ +F + Q + L Q
Sbjct: 190 KLTAVFWKAHMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQ 249
Query: 355 IIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDT--TKELIATDIMFIRSLVVPP 412
+ ++ GY+ + LW NE FL L +D + + F+ LVVPP
Sbjct: 250 MGKR---GYLTPTSAREHLFALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPP 306
Query: 413 NNLRPLSM--EQMPPVEHSRNKLYQSILYSCGSLKSVI--MAMKNK-----------EQS 457
+ RP+S +QM + N Q+++ ++ ++ MA + K E+
Sbjct: 307 SRYRPVSRLGDQMFTNGQTVN--LQAVMKDVVLIRKLLALMAQEQKLPEEVAAPPPDEEK 364
Query: 458 DLL----SEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQML 513
D L L + G + +KL N W LQ +V+++ D++++ + G++Q+L
Sbjct: 365 DSLIAIDRSFLSTLPGQSFIDKLYNIWIRLQSHVNIVFDSEMD---KLMMDKYPGIRQIL 421
Query: 514 DGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLR 573
+ K G+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR
Sbjct: 422 EKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELR 481
Query: 574 KMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
+ VINGPNV+PGA+M+ NEDGS +S+ QRE++AK+L+TP
Sbjct: 482 QAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTP 525
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 66/87 (75%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 439 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 498
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +S+ QRE++AK+L+TP
Sbjct: 499 NEDGSRTALSAVDMTQREAVAKQLLTP 525
>gi|380811490|gb|AFE77620.1| DNA-directed RNA polymerase I subunit RPA1 [Macaca mulatta]
Length = 1720
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 172/524 (32%), Positives = 275/524 (52%), Gaps = 53/524 (10%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P +SLG+ GLYDLA+GP + + C+TC ++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSK-EVCSTCVQDFNNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELP+ V N L F + LLL+ SC CH + P L + Q+++L+ G + +L
Sbjct: 79 GHIELPLTVYNPLLFDKLYLLLRGSCLNCHLLTCPRAVIHLLLCQLRVLEVGALQAVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSIL---------AHGTKICDINDYKGGEELRS 297
E L F EEN +++ + ++ + I+ AH +C E +S
Sbjct: 139 ERILNRFLEENADPSASEIQEELEQYTAEIVQNNLLGSQGAHVKNVC---------ESKS 189
Query: 298 AFVAQVLSRHV-KRKCIFCATPINAISYQQR-KIIKSF-KIDKDNLDQSLDKSLNKSSNQ 354
A H+ ++C C T + + + K+ +F + Q + L Q
Sbjct: 190 KLTAVFWKAHMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQ 249
Query: 355 IIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDT--TKELIATDIMFIRSLVVPP 412
+ ++ GY+ + LW NE FL L +D + + F+ LVVPP
Sbjct: 250 MGKR---GYLTPTSAREHLFALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPP 306
Query: 413 NNLRPLSM--EQMPPVEHSRNKLYQSILYSCGSLKSVI--MAMKNK-----------EQS 457
+ RP+S +QM + N Q+++ ++ ++ MA + K E+
Sbjct: 307 SRYRPVSRLGDQMFTNGQTVN--LQAVMKDVVLIRKLLALMAQEQKLPEEVAAPPPDEEK 364
Query: 458 DLL----SEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQML 513
D L L + G + +KL N W LQ +V+++ D++++ + G++Q+L
Sbjct: 365 DSLIAIDRSFLSTLPGQSFIDKLYNIWIRLQSHVNIVFDSEMD---KLMMDKYPGIRQIL 421
Query: 514 DGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLR 573
+ K G+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR
Sbjct: 422 EKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELR 481
Query: 574 KMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
+ VINGPNV+PGA+M+ NEDGS +S+ QRE++AK+L+TP
Sbjct: 482 QAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTP 525
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 66/87 (75%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 439 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 498
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +S+ QRE++AK+L+TP
Sbjct: 499 NEDGSRTALSAVDMTQREAVAKQLLTP 525
>gi|395508814|ref|XP_003758704.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Sarcophilus
harrisii]
Length = 1708
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 163/519 (31%), Positives = 266/519 (51%), Gaps = 70/519 (13%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+++LSV + +P + +G+ GLYDL++GP + + C+TC ++ C GH+
Sbjct: 20 YSAEELRKLSVKAITNPRYVDHVGNPSVNGLYDLSLGPADSK-EACSTCVQDFGSCPGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHI+LP+ V N L F + LL++ SC CH + P L Q+++L+ G + +L
Sbjct: 79 GHIDLPLVVYNPLLFDKLYLLIRGSCLNCHLLTCPRPVVHLLYCQLRVLEVGALQGVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSR 306
E TL F +EN ++ + ++ H ++IL + + K E +S +A
Sbjct: 139 ESTLNRFQDENPNASVCEMQEELEEHTRAILENNLLGAQGSQVKNVCESKSKLIAHFWKA 198
Query: 307 HVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMA 366
H+ K + S +ID+ +L + +GY+
Sbjct: 199 HMASK----------------RCPHSPEIDEAHLGK------------------RGYLTP 224
Query: 367 SEVEADFKKLWTNEHLFLKCLIPVLDT--TKELIATDIMFIRSLVVPPNNLRPLSM--EQ 422
S LW NE FLK L ++ + +I F+ +VVPP+ RP++ +Q
Sbjct: 225 STAREHVLALWENEGFFLKYLFSGVEEPGMESKFNPNIFFLDLVVVPPSRYRPVNRLGDQ 284
Query: 423 MPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKE--------------QSDLLSEA----- 463
M + N Q++L ++ ++ M ++ Q+ EA
Sbjct: 285 MFTNGQTVN--LQAVLKDVVLIRKLLALMAQEQALPSEGIGATEKEIQNGSPEEAESSVP 342
Query: 464 -----LKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTG 518
L I G +L KL W LQ +V+++ D+ ++ + G++Q+L+ K G
Sbjct: 343 MDRSFLATIPGQSLTEKLYGMWIRLQSHVNIVFDSDMD---KLMMEKYPGIRQILEKKEG 399
Query: 519 MIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVIN 578
+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VIN
Sbjct: 400 LFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVIN 459
Query: 579 GPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
GPNV+PGA+M+ NEDGS +S++ QRE++AK+L+TP
Sbjct: 460 GPNVHPGASMVINEDGSRTALSTTDLTQREAVAKQLLTP 498
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 67/87 (77%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 412 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 471
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +S++ QRE++AK+L+TP
Sbjct: 472 NEDGSRTALSTTDLTQREAVAKQLLTP 498
>gi|338714112|ref|XP_001916227.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I
subunit RPA1 [Equus caballus]
Length = 1720
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 168/521 (32%), Positives = 276/521 (52%), Gaps = 47/521 (9%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P +SLG+ GLYDLA+GP + + C+TC ++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYLDSLGNPSVNGLYDLALGPADSK-EVCSTCVQDFNNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELP+ V N L F + LLL+ SC CH + P L + Q+++L+ G + +L
Sbjct: 79 GHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLVCQLRVLEVGALQGVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSIL------AHGTKICDINDYKGGEELRSAFV 300
E L F EEN ++ + ++ + I+ +HG + ++ E RS +
Sbjct: 139 ERILNRFLEENSDPTAFEIQEELEQYTTKIVQNNLLGSHGAHVKNVC------ESRSKLI 192
Query: 301 AQVLSRHV-KRKCIFCATPINAI--SYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIR 357
A H+ ++C C T + + + + I + DQ + Q+ +
Sbjct: 193 AYFWKAHMTAKRCPHCKTGRSVVRKEHNSKLTITYPAMXHRKADQKDTEPPGIEEAQMGK 252
Query: 358 KREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTT--KELIATDIMFIRSLVVPPNNL 415
+ GY+ + LW NE FL L L+ + + F+ LVVPP+
Sbjct: 253 R---GYLTPTSAREHLITLWKNEGFFLNYLFLGLEDVGMESRFNPSMFFLDFLVVPPSRY 309
Query: 416 RPLSM--EQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQ--SDLLSEA-------- 463
RP+S +QM + N Q+++ ++ ++ M +++ ++ + A
Sbjct: 310 RPVSRLGDQMFTNGQTVN--LQAVMKDMVLIRKLLALMAQEQELPCNVAASAAHEEKDSS 367
Query: 464 -------LKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGK 516
L + G +L +KL N W LQ +V+++ D++++ + G++Q+L+ K
Sbjct: 368 MPVDRSFLSMLPGQSLTDKLYNIWIRLQSHVNIVFDSEMD---KLMMEKYPGIRQILEKK 424
Query: 517 TGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMV 576
G+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ V
Sbjct: 425 DGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAV 484
Query: 577 INGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
INGPNV+PGA+M+ NEDGS +S+ QRE++AK+L+TP
Sbjct: 485 INGPNVHPGASMVINEDGSRTALSAVDLTQREAVAKQLLTP 525
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 66/87 (75%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 439 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 498
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +S+ QRE++AK+L+TP
Sbjct: 499 NEDGSRTALSAVDLTQREAVAKQLLTP 525
>gi|300797776|ref|NP_001179805.1| DNA-directed RNA polymerase I subunit RPA1 [Bos taurus]
gi|296482516|tpg|DAA24631.1| TPA: DNA-directed RNA polymerase I subunit RPA1-like [Bos taurus]
Length = 1717
Score = 252 bits (644), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 166/513 (32%), Positives = 272/513 (53%), Gaps = 31/513 (6%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P +SLG+ GLYDLA+GP + + C+TC ++T C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYLDSLGNPSVNGLYDLALGPADSK-EVCSTCVQDFTNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHI+LP+ V N L F + LLL+ SC CH + P L + Q+++L+ G + +L
Sbjct: 79 GHIDLPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVVHLLLCQLRVLEVGALQAVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSR 306
E L F EEN ++ + ++ + IL + K E +S ++
Sbjct: 139 ERILYRFLEENADPTACEIQEELEQYTIKILQNNLPGSQGAQVKNVCESKSKLISVFWKV 198
Query: 307 HV-KRKCIFCATPINAI--SYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGY 363
H+ ++C C T + + + + I + DQ + Q+ ++ GY
Sbjct: 199 HMTAKRCPHCKTGRSVVRKEHNSKLTITYPAMVHRRADQKDSEPQGIEEAQMGKR---GY 255
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPVLDTT--KELIATDIMFIRSLVVPPNNLRPLSM- 420
+ S + LW NE FL L L+ + + F+ LVVPP+ RP++
Sbjct: 256 LTPSSAQEHLIALWKNEGFFLNYLFLGLEDVGMESRFNPSMFFLDFLVVPPSRYRPVNRL 315
Query: 421 -EQMPPVEHSRN-----------KLYQSILYSCGSLKSVIMAMKNKEQSD----LLSEAL 464
+QM + N + +++ L S + A +E+ D + L
Sbjct: 316 GDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQELPSEVAAPTTEEEKDSWMAMDRSFL 375
Query: 465 KGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNM 524
+ G +L ++L N W LQ +V+++ D++++ + G++Q+L+ K G+ R++M
Sbjct: 376 SQLPGQSLTDRLYNIWIRLQSHVNIVFDSEMD---KLMMEKYPGIRQILEKKDGLFRKHM 432
Query: 525 MGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYP 584
MGKRV++A RSVI PD Y++ + IG+P+ FA LTYP PVTPWNV LR+ VINGPN++P
Sbjct: 433 MGKRVDYAARSVICPDMYISTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNMHP 492
Query: 585 GANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
GA+M+ NEDGS +S+S QRE++AK+L+TP
Sbjct: 493 GASMVINEDGSRTALSASDLTQREAVAKQLLTP 525
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 67/87 (77%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y++ + IG+P+ FA LTYP PVTPWNV LR+ VINGPN++PGA+M+
Sbjct: 439 YAARSVICPDMYISTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNMHPGASMVI 498
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +S+S QRE++AK+L+TP
Sbjct: 499 NEDGSRTALSASDLTQREAVAKQLLTP 525
>gi|311252217|ref|XP_003124986.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Sus scrofa]
Length = 1719
Score = 252 bits (643), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 168/521 (32%), Positives = 280/521 (53%), Gaps = 47/521 (9%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P +SLG+ GLYDLA+GP + + C+TC ++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPPDSK-EVCSTCVQDFNNCPGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELP+ V N L F + LLL+ SC CH + P L + Q+++L+ G + +L
Sbjct: 79 GHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYEL 138
Query: 249 EETLFN--EENLRLHPAQLVQLVDSHVQSIL------AHGTKICDINDYKGGEELRSAFV 300
E L+ EEN +++ + ++ + +I+ +HG+ + ++ E RS +
Sbjct: 139 ERILYRFLEENPDPTASEIQEELEQYTATIVQNNLLGSHGSHVKNVC------ESRSKLI 192
Query: 301 AQVLSRHV-KRKCIFCATPINAI--SYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIR 357
A H+ ++C C T + + + + I + DQ + Q+ +
Sbjct: 193 ASFWKAHMTAKRCPHCRTGRSVVRKEHNSKLTITYPAMVHRKADQKDAEPQGIEEAQMGK 252
Query: 358 KREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTT--KELIATDIMFIRSLVVPPNNL 415
+ GY+ + LW NE FL L L+ + + F+ LVVPP+
Sbjct: 253 R---GYLTPLSAQDHLIALWKNEGFFLNYLFLGLEDVGLESRFNPSMFFLDFLVVPPSRY 309
Query: 416 RPLSM--EQMPPVEHSRNKLYQSILYSCGSLKSVIMAM----------------KNKEQS 457
RP++ +QM + N Q+++ ++ ++ M + K+ S
Sbjct: 310 RPVNRLGDQMFTNGQTVN--LQAVMKDVVLIRKLLALMAQEQELPCEVAAPAPDEEKDSS 367
Query: 458 DLLSEA-LKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGK 516
+ + L + G +L ++L N W LQ +V+++ D++++ K T + G++Q+L+ K
Sbjct: 368 TAMDRSFLSLLPGQSLTDRLYNIWIRLQSHVNIVFDSEMD--KLT-MEKYPGIRQILEKK 424
Query: 517 TGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMV 576
G+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ V
Sbjct: 425 DGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAV 484
Query: 577 INGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
INGP V+PGA+M+ NEDGS +S+S QRE++AK+L+TP
Sbjct: 485 INGPTVHPGASMVINEDGSRTALSASDLTQREAVAKQLLTP 525
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 66/87 (75%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGP V+PGA+M+
Sbjct: 439 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPTVHPGASMVI 498
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +S+S QRE++AK+L+TP
Sbjct: 499 NEDGSRTALSASDLTQREAVAKQLLTP 525
>gi|241949841|ref|XP_002417643.1| DNA-directed RNA polymerase I 190 kda polypeptide largest subunit,
putative [Candida dubliniensis CD36]
gi|223640981|emb|CAX45330.1| DNA-directed RNA polymerase I 190 kda polypeptide largest subunit,
putative [Candida dubliniensis CD36]
Length = 1656
Score = 251 bits (642), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 170/536 (31%), Positives = 271/536 (50%), Gaps = 58/536 (10%)
Query: 130 TDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+D+E+++LS ++ +PI F++LGH I GGLYDL++G + CTTCG + C GH+G
Sbjct: 20 SDEEIRKLSAKQITNPIVFDNLGHPINGGLYDLSLGAFLR--NVCTTCGLDEKFCPGHLG 77
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLE 249
HIELPVPV N +FF + + L+ +C CHK + F ++ L+ G + + +L+
Sbjct: 78 HIELPVPVYNPMFFNQLYIFLRSACLYCHKFKLNQLEVHNFECKLHLIQYGLLLECVELD 137
Query: 250 ETL----------------------FNEENLRLHPAQLVQLVDSHVQSILAHGTKICDIN 287
+ +E++ R + V + ++S L G
Sbjct: 138 NIMAKSSKSSSEIDIDGEDDDEEGSVDEKSKRDLMKRRELFVKNAIESALKDGR-----T 192
Query: 288 DYKGG-----EELRSAFVAQVLSRHVKR-KCIFCA-----------TPINAISYQQRKI- 329
+KG E R A + R + R KC C T I S ++I
Sbjct: 193 SHKGVVTASVSEERKATIHDFYKRLLSRPKCTNCGMYSPGFRKDGFTKIFENSLTDKQIT 252
Query: 330 ---IKSFK---IDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLF 383
+K + + K N S I K YV+++EV + L+ E
Sbjct: 253 NNRVKGLQRPDMIKKNAGNGNSSSAASDLPNIKHKGGSKYVLSTEVRNILRSLFHKEQAI 312
Query: 384 LKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGS 443
L+ + + I+ D+ F ++++VPP R S E+++N+L +I+ +
Sbjct: 313 LQKVFHSRPYQHDPISGDLFFKQAVLVPPTRFRLPSKLGDEIHENAQNELLSNIIKT--- 369
Query: 444 LKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGA 503
SV++ N+ S++ E + G + N+L N++ LQ +V+ +D+ N N G
Sbjct: 370 --SVLIRDLNERISNMYKEKISGEDKKIIFNRLMNAFVTLQNDVNAFIDSTKNQNAPAGK 427
Query: 504 HQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVP 563
G+KQ L+ K G+ R++MMGKRVN+A RSVI+PDP L + IGVP FAK LTYP P
Sbjct: 428 VPNPGIKQALEKKEGLFRKHMMGKRVNYAARSVISPDPNLETNEIGVPPVFAKKLTYPEP 487
Query: 564 VTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPEG 619
VT +NV+ LR+ VINGP+ +PGA +QNEDGS++ + QR+++A +L+TP G
Sbjct: 488 VTSYNVSELRQAVINGPDTWPGAIQVQNEDGSLISLVGMTLEQRKAIANQLLTPNG 543
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 63/87 (72%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP L + IGVP FAK LTYP PVT +NV+ LR+ VINGP+ +PGA +Q
Sbjct: 455 YAARSVISPDPNLETNEIGVPPVFAKKLTYPEPVTSYNVSELRQAVINGPDTWPGAIQVQ 514
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS++ + QR+++A +L+TP
Sbjct: 515 NEDGSLISLVGMTLEQRKAIANQLLTP 541
>gi|432102463|gb|ELK30040.1| DNA-directed RNA polymerase I subunit RPA1 [Myotis davidii]
Length = 1657
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 166/522 (31%), Positives = 276/522 (52%), Gaps = 49/522 (9%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P +SLG+ GLYDLA+GP + + C+TC ++ C GH+
Sbjct: 14 YSAEELKKLSVKSITNPRYLDSLGNPSVNGLYDLALGPADSK-EVCSTCVQDFNNCSGHL 72
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELP+ V N L F + LLL+ SC CH + P L I Q+++L+ G + +L
Sbjct: 73 GHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLICQLRVLEVGALQAVYEL 132
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSR 306
E L F EEN ++ + ++ + + I+ + + K E +S +
Sbjct: 133 ERILNRFLEENADPTAFEIQEELEQYTREIVQNNLLGSQGSHVKNVCESKSKLITCFWRT 192
Query: 307 HV-KRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQI---------I 356
H+ ++C C T R +++ K L + +++ + Q
Sbjct: 193 HMTAKRCPHCKT--------GRAVVR--KEHNSKLTVTYPAVVHRKAGQTDTEPPGIDEA 242
Query: 357 RKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTT--KELIATDIMFIRSLVVPPNN 414
+ ++GY+ + LW NE FL L L+ + + F+ LVVPP+
Sbjct: 243 QMGKRGYLTPTGAREHLTALWKNEGFFLNFLFSGLEDVDMESRFNPTMFFLDFLVVPPSR 302
Query: 415 LRPLSM--EQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQ---------SDLLSEA 463
RP++ +QM + N Q+++ ++ ++ M +++ +D ++
Sbjct: 303 YRPVNRLGDQMYTNGQTVN--LQAVMKDVVLIRKLLALMAQEQELPWEVAAPATDEEKDS 360
Query: 464 LKGIR--------GDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDG 515
G+ G +L +KL N W LQ +V+++ D++++ T + G++Q+L+
Sbjct: 361 SNGMDRSFLSMLPGQSLTDKLYNIWIRLQSHVNIVFDSEMDKLMT---EKYPGIRQILEK 417
Query: 516 KTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKM 575
K G+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+
Sbjct: 418 KEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQA 477
Query: 576 VINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
VINGPNV+PGA+M+ NEDGS +S+ QRE++AK+L+TP
Sbjct: 478 VINGPNVHPGASMVINEDGSRTALSAVDLTQREAVAKQLLTP 519
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 66/87 (75%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 433 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 492
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +S+ QRE++AK+L+TP
Sbjct: 493 NEDGSRTALSAVDLTQREAVAKQLLTP 519
>gi|281339706|gb|EFB15290.1| hypothetical protein PANDA_018669 [Ailuropoda melanoleuca]
Length = 1692
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 172/523 (32%), Positives = 277/523 (52%), Gaps = 61/523 (11%)
Query: 134 VKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIEL 193
+++LSV + +P +SLG+ GLYDLA+GP + + C+TC ++ C GH+GHIEL
Sbjct: 1 LRKLSVKSITNPRYLDSLGNPSVNGLYDLALGPADSK-EVCSTCVQDFNNCSGHLGHIEL 59
Query: 194 PVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETL- 252
P+ V N L F + LLL+ SC CH + P L + Q+++L+ G + +LE L
Sbjct: 60 PLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLVCQLRVLEVGALQAVYELERILN 119
Query: 253 -FNEEN-----------LRLHPAQLVQ--LVDSHVQSILAHGTKICDINDYKGGEELRSA 298
F EEN L + A++VQ L+ SH AH +C E +S
Sbjct: 120 RFLEENADPTAFEIQEELEQYTAKIVQNNLLGSHG----AHVKNVC---------ESKSK 166
Query: 299 FVAQVLSRHV-KRKCIFCATPINAISYQQR-KIIKSF-KIDKDNLDQSLDKSLNKSSNQI 355
+A H+ ++C C T + + + K+ ++ + +Q + L Q+
Sbjct: 167 LIAYFWKTHMTAKRCPHCKTGRSVVRKEHNSKLTVTYPAMVHKKANQKDTEPLGIEEAQM 226
Query: 356 IRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTT--KELIATDIMFIRSLVVPPN 413
++ GY+ + LW NE FL L L+ + + F+ LVVPP+
Sbjct: 227 GKR---GYLTPTSAREHLTALWKNEGFFLNYLFSGLENVDMESRFNPSMFFLDFLVVPPS 283
Query: 414 NLRPLSM--EQMPPVEHSRNKLYQSILYSCGSLKSVIMAM----------------KNKE 455
RP++ +QM + N Q+++ ++ ++ M ++K+
Sbjct: 284 RYRPVNRLGDQMFTNGQTVN--LQAVMKDMVLIRKLLALMAQEQELPCEVAAPAKDEDKD 341
Query: 456 QSDLLSEA-LKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLD 514
S +L + L + G +L +KL N W LQ +V+++ D++++ + G++Q+L+
Sbjct: 342 SSVVLDRSFLSMLPGQSLTDKLYNIWIRLQSHVNIVFDSEMD---KLMMEKYPGIRQILE 398
Query: 515 GKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRK 574
K G+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+
Sbjct: 399 KKDGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQ 458
Query: 575 MVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
VINGPNV+PGA+M+ NEDGS +S+ QRE++AK+L+TP
Sbjct: 459 AVINGPNVHPGASMVINEDGSRTALSAVNLTQREAVAKQLLTP 501
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 66/87 (75%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 415 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 474
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +S+ QRE++AK+L+TP
Sbjct: 475 NEDGSRTALSAVNLTQREAVAKQLLTP 501
>gi|392580430|gb|EIW73557.1| hypothetical protein TREMEDRAFT_26611 [Tremella mesenterica DSM
1558]
Length = 1691
Score = 248 bits (634), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 170/567 (29%), Positives = 273/567 (48%), Gaps = 73/567 (12%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
L + + ++V+ +SV K+ +PI ++LG GGLYD +GP+S R D C TC +Y
Sbjct: 14 LSFSFLSSRDVEAISVQKIDNPILLDNLGLPTKGGLYDPKLGPMSSR-DICQTCHLSYFA 72
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVT 243
C GH GHI LP PV + LF R+ +LL+ C CH +P +I +++LLDAG V
Sbjct: 73 CPGHFGHIVLPNPVYHPLFMRECYILLQSVCQFCHHFKMPEILLRQYIGRLRLLDAGLVE 132
Query: 244 QAKDLEETLFNEENLRL-------------------HPAQLVQLVDSHVQSILAHGTKIC 284
++ D+ L A+L+ +D +V+S L K
Sbjct: 133 RSHDMAYFLPRTSKDDGDDDGEEGDEKTRADAVSAESAAELIVRMDGYVKSCLHEAKKRS 192
Query: 285 DINDYKGG---EELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLD 341
Y G EE R A A + + R C C+ + +Y++ K IK ++D D
Sbjct: 193 GKEKYMDGLIFEERRKARNAFIAAAKGWRSCKRCSA--HGFTYRKEKSIKIVELDLDPKK 250
Query: 342 QSLDKSLNKSSNQII----------------------------------------RKREQ 361
+ ++K L Q+I R R +
Sbjct: 251 KEVNKVLGVRRPQVIGSGSRSSHGSSSSDEDENIDVDSDEGVTVARAANGQIKGRRGRNE 310
Query: 362 GYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELI----ATDIMFIRSLVVPPNNLRP 417
+ ASEV L++ E L +K I + DI F+ L V P RP
Sbjct: 311 RVMPASEVREHIGLLFSKESEMCNLLYGRNRNSKSNINCSPSADIFFLDVLPVTPTRFRP 370
Query: 418 LSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNK---EQSDLLSEALKGIRGDTLNN 474
S E+S+N L +++ +C ++ + + ++ E+ +++ +A+ G
Sbjct: 371 ASKLGDELFENSQNSLLTAVIQTCRRIQDLNQRLHDQVKAERGEIVLDAIAKAEGSRTFE 430
Query: 475 KLQNSWHELQYNVDLLMDAKLNINKTTGAH-QIDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
L + ++Q++V+ +D+ N G G+KQ+L+ K G+ R++MMGKRVN+A
Sbjct: 431 LLLEALIKVQHDVNSFVDSTQNPTIMRGGKLPPQGVKQLLEKKEGLFRKHMMGKRVNYAA 490
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
RSVI+PD + + IG+P FAK LTYP PVT N+ LR++VINGP V+PGA ++QNED
Sbjct: 491 RSVISPDINIETNEIGIPPVFAKKLTYPEPVTAQNINELRQLVINGPKVHPGAALVQNED 550
Query: 594 GSVVRISSSQAVQRESLAKRLITPEGN 620
G+ V + + QR+++A +L+TP+ +
Sbjct: 551 GTQVSLDKTTIEQRQAIANQLLTPQSD 577
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 65/94 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PD + + IG+P FAK LTYP PVT N+ LR++VINGP V+PGA ++Q
Sbjct: 488 YAARSVISPDINIETNEIGIPPVFAKKLTYPEPVTAQNINELRQLVINGPKVHPGAALVQ 547
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRA 107
NEDG+ V + + QR+++A +L+TP+ + A
Sbjct: 548 NEDGTQVSLDKTTIEQRQAIANQLLTPQSDAYSA 581
>gi|68490869|ref|XP_710761.1| hypothetical protein CaO19.9397 [Candida albicans SC5314]
gi|68490951|ref|XP_710723.1| hypothetical protein CaO19.1839 [Candida albicans SC5314]
gi|46431960|gb|EAK91475.1| hypothetical protein CaO19.1839 [Candida albicans SC5314]
gi|46432002|gb|EAK91513.1| hypothetical protein CaO19.9397 [Candida albicans SC5314]
Length = 1665
Score = 248 bits (632), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 169/543 (31%), Positives = 278/543 (51%), Gaps = 65/543 (11%)
Query: 130 TDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+D+E+++LS ++ +PI F++LGH I GGLYDL++G + CTTCG + C GH+G
Sbjct: 20 SDEEIRKLSAKQITNPIVFDNLGHPINGGLYDLSLGAFLR--NVCTTCGLDEKFCPGHLG 77
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLE 249
HIELPVPV N +FF + + L+ +C CHK + F ++ L+ G + + +L+
Sbjct: 78 HIELPVPVYNPMFFNQLYIFLRSACLYCHKFKLNQLEVHNFECKLHLIQYGLLLECVELD 137
Query: 250 ETLF------------NEENLRLHPAQLVQ-------------LVDSHVQSILAHGTKIC 284
+ E+N V V + ++S L G
Sbjct: 138 NIMAKSSKSSSVIDVDGEDNDDEEGGGSVDEKSKKDLMKRRELFVKNAIESALKDGR--- 194
Query: 285 DINDYKGG-----EELRSAFVAQVLSRHVKR-KCIFCA-----------TPINAISYQQR 327
++KG E R A + + R + R KC C T I S +
Sbjct: 195 --TNHKGVVTASVSEERKATIHEFYKRLLSRPKCTNCGMYSPGFRKDGFTKIFENSLTDK 252
Query: 328 KI----IKSFK----IDKDNLDQSLDKSLNKSSNQIIRKREQG---YVMASEVEADFKKL 376
+I +K + I K+ + + + S +++ + + +G YV+++EV + L
Sbjct: 253 QITNNRVKGLQRPDMIKKNAGNGNGNSSSTGAASDLPNIKHKGGSKYVLSTEVRNILRSL 312
Query: 377 WTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQS 436
+ E L+ + + I+ D+ F +S++VPP R S E+++N+L +
Sbjct: 313 FHKEQAILQKVFHSRPYQHDPISGDLFFKQSVLVPPTRFRLPSKLGDEIHENAQNELLSN 372
Query: 437 ILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLN 496
I+ + SV++ N+ +++ E + G + N+L N++ LQ +V+ +D+ N
Sbjct: 373 IIKT-----SVLIRDLNERITNMYKEKISGEDKKIIFNRLMNAFVTLQNDVNAFIDSTKN 427
Query: 497 INKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAK 556
N G G+KQ L+ K G+ R++MMGKRVN+A RSVI+PDP L + IGVP FAK
Sbjct: 428 QNAPAGKIPNPGIKQALEKKEGLFRKHMMGKRVNYAARSVISPDPNLETNEIGVPPVFAK 487
Query: 557 TLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLIT 616
LTYP PVT +N + LR+ VINGP+ +PGA +QNEDGS++ + QR+++A +L+T
Sbjct: 488 KLTYPEPVTSYNASELRQAVINGPDTWPGAIQVQNEDGSLISLIGMTLEQRKAIANQLLT 547
Query: 617 PEG 619
P G
Sbjct: 548 PNG 550
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 62/87 (71%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP L + IGVP FAK LTYP PVT +N + LR+ VINGP+ +PGA +Q
Sbjct: 462 YAARSVISPDPNLETNEIGVPPVFAKKLTYPEPVTSYNASELRQAVINGPDTWPGAIQVQ 521
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS++ + QR+++A +L+TP
Sbjct: 522 NEDGSLISLIGMTLEQRKAIANQLLTP 548
>gi|410083934|ref|XP_003959544.1| hypothetical protein KAFR_0K00540 [Kazachstania africana CBS 2517]
gi|372466136|emb|CCF60409.1| hypothetical protein KAFR_0K00540 [Kazachstania africana CBS 2517]
Length = 1662
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 165/555 (29%), Positives = 277/555 (49%), Gaps = 78/555 (14%)
Query: 130 TDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
T ++++ LS ++ +P ++LGH I GGLYDL++G + CTTCG + C GH+G
Sbjct: 20 TSKDIRSLSAKQIINPTVLDNLGHPISGGLYDLSLGAFLR--NLCTTCGLDEKFCPGHVG 77
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLE 249
HIELPVPV N LFF + + L+ SC CH + + F ++KLL G + ++ L+
Sbjct: 78 HIELPVPVYNPLFFNQLYIYLRSSCLFCHHFRLKSAEVHRFALKLKLLQYGLIDESYKLD 137
Query: 250 ETLFNEENLRLHPAQLVQLVDSHV---QSILAHGTKICDINDYKGGEELRSAFVAQVLSR 306
E + + A+ + ++ + S+ A TK K + R+ +V V+++
Sbjct: 138 EIAVGDLQHLMDEAENDEAMEDNTLNGGSVKASDTKNVSAQWLKELKRKRTEYVDLVIAK 197
Query: 307 -----HVKRKCIFCATPINAISYQQRKIIKSF------------------KIDKDNLDQS 343
+ F AT ++ +++++I F K KD +
Sbjct: 198 ALSDGRTTERGTFTAT----VNDERKRLIHEFHKKILARPKCDNCGMFSPKFRKDGFTKI 253
Query: 344 LDKSLNK---SSNQI--------IRKREQG-----------------------------Y 363
+ +L ++N++ I K+EQ Y
Sbjct: 254 FETALTDKQLTNNRVKGFIRQDMINKQEQAKQLAGQDIDSDKTFDIGRNPASKPKTGSTY 313
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPVL-DTTKELIATDIMFIRSLVVPPNNLRPLSMEQ 422
++++EV ++ E + L+ + + +K+ ++ D F+ +VVPP R S
Sbjct: 314 ILSTEVRNILNAVFRKEQMVLQYIFHARPNLSKKYVSADAFFMDVVVVPPTRFRLPSKLG 373
Query: 423 MPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHE 482
E+S+N+L IL + S+++ N E S L + + + ++L N++
Sbjct: 374 EEVHENSQNQLLSKILTT-----SLLIRDLNDEMSKLQKDKVSVDDRRIIFSRLMNAFVT 428
Query: 483 LQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPY 542
+Q +V+ +D+ T+G + G+KQ L+ K G+ R++MMGKRVN+A RSVI+PDP
Sbjct: 429 IQNDVNAFIDSTKAQGNTSGKVPVPGVKQALEKKEGLFRKHMMGKRVNYAARSVISPDPN 488
Query: 543 LNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSS 602
+ + IGVP FA LTYP PVT +N+ LR+ VINGP+ +PGA IQNEDGS+V +
Sbjct: 489 IETNEIGVPPVFATKLTYPEPVTSFNIAELRQAVINGPDKWPGATQIQNEDGSLVSLIGM 548
Query: 603 QAVQRESLAKRLITP 617
A QR++LA +L+TP
Sbjct: 549 SAEQRKALANQLMTP 563
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 62/87 (71%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP + + IGVP FA LTYP PVT +N+ LR+ VINGP+ +PGA IQ
Sbjct: 477 YAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTSFNIAELRQAVINGPDKWPGATQIQ 536
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS+V + A QR++LA +L+TP
Sbjct: 537 NEDGSLVSLIGMSAEQRKALANQLMTP 563
>gi|320582105|gb|EFW96323.1| alpha subunit of RNA polymerase I [Ogataea parapolymorpha DL-1]
Length = 1631
Score = 246 bits (627), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 170/535 (31%), Positives = 278/535 (51%), Gaps = 54/535 (10%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNY 181
E + T +V++LS ++ +P F++LGH +PGGLYDL++G + + C TCG +
Sbjct: 12 ESVDFGVLTTSDVRKLSAKQITNPTVFDNLGHPVPGGLYDLSLGAFLK--NLCATCGLDD 69
Query: 182 TKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGY 241
C GH GHIELP+PV N LFF + + L+ SC CH + AT + +++L+ G
Sbjct: 70 KYCPGHQGHIELPIPVYNPLFFNQMYIFLRSSCLYCHHFRLRATEVHKYECKLRLIQYGL 129
Query: 242 VTQAKDL-----------EETLFNEENLRLHPAQLVQLVDSH-------VQSILAHG-TK 282
+ +A +L +E + ++ + ++ +L+D + L+ G T
Sbjct: 130 LLEALELDNMRSDAELNEDEAIEDDGPVAVNSKSDKELMDKRQEFVEISIAKALSEGRTT 189
Query: 283 ICDINDYKGGEELRS---AFVAQVLSRHVKRKCIFCA-----------TPINAISYQQRK 328
+ EE ++ F +LSR +C C + I + + ++
Sbjct: 190 ERGVMTATVAEERKALIHDFYKHILSRP---RCDNCGMYSPQFRKDGFSKIFELGLKDKQ 246
Query: 329 I----IKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQG-YVMASEVEADFKKLWTNEHLF 383
+ IK K + ++ ++ K ++ + RE YV+++EV +K++ E
Sbjct: 247 LTNNRIKGVK--RQDMLKNGSKDKQPDTDPYSQPREGSKYVLSTEVRNILRKVFKTEQKV 304
Query: 384 LKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGS 443
+ L ++ ++ D+ FI +LVVPP R S E+S+N+L IL +
Sbjct: 305 MDLLFHSRPLSRSPVSADMFFIHALVVPPTRFRLPSKLGDEVHENSQNELLSKILTTS-- 362
Query: 444 LKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTG- 502
+M EQ +LS+ + + N+L N++ LQ +V+ +D+ N N+ +
Sbjct: 363 ----LMIRDLNEQFSVLSKEISTEDRKIIFNRLMNAFVTLQNDVNGFIDSTKNQNQNSNT 418
Query: 503 AHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPV 562
AH G+KQ L+ K G+ R++MMGKRVN+A RSVI+PDP + + IGVP FAK LTYP
Sbjct: 419 AHP--GIKQALEKKEGLFRKHMMGKRVNYAARSVISPDPMIETNEIGVPPVFAKKLTYPE 476
Query: 563 PVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
PVT NV LR+ VINGP+ +PGA +QNEDGS+V + QR ++AK+L+TP
Sbjct: 477 PVTVHNVAELRQAVINGPDRWPGALQVQNEDGSLVSLVGMSLEQRTAIAKQLLTP 531
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/89 (52%), Positives = 62/89 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP + + IGVP FAK LTYP PVT NV LR+ VINGP+ +PGA +Q
Sbjct: 445 YAARSVISPDPMIETNEIGVPPVFAKKLTYPEPVTVHNVAELRQAVINGPDRWPGALQVQ 504
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPED 102
NEDGS+V + QR ++AK+L+TP +
Sbjct: 505 NEDGSLVSLVGMSLEQRTAIAKQLLTPSN 533
>gi|294655924|ref|XP_002770194.1| DEHA2C10670p [Debaryomyces hansenii CBS767]
gi|199430718|emb|CAR65558.1| DEHA2C10670p [Debaryomyces hansenii CBS767]
Length = 1644
Score = 244 bits (623), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 172/531 (32%), Positives = 270/531 (50%), Gaps = 58/531 (10%)
Query: 133 EVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIE 192
E+++LS ++ +P F++LGH I GLYDLA+G + CTTCG + C GH GHIE
Sbjct: 23 EIRRLSAKQITNPTVFDNLGHPISSGLYDLALGAFLR--NLCTTCGLDEKFCPGHQGHIE 80
Query: 193 LPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETL 252
LPVPV N LFF + + L+ SC CH + + +++L+ G + + +L+ L
Sbjct: 81 LPVPVYNPLFFNQLYIFLRSSCLYCHNFRYNSLEVHRYECKLRLIQYGLLLECIELDNML 140
Query: 253 F--------------NEENLRLHPAQLVQL-------VDSHVQSILAHG-TKICDINDYK 290
+ P +L VD+ + ++ G + +
Sbjct: 141 MKGAENNDDDDDDEDGSSSKNADPRAKKELRERRELFVDTAIAKAISEGRSSQFGVITAS 200
Query: 291 GGEELRSA---FVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFK---IDK---DNLD 341
GEE ++ F ++LSR KC C + + ++++ K F+ DK +N
Sbjct: 201 VGEERKATIHEFYKKLLSRP---KCDNCG--MYSATFRKDGFTKIFENALKDKQVTNNRV 255
Query: 342 QSLDK--------SLNKSSNQ-------IIRKREQGYVMASEVEADFKKLWTNEHLFLKC 386
+ L + S N SNQ I K YV+++E+ + ++ E ++
Sbjct: 256 KGLKRPDVLKTGSSANNDSNQTNENIPSIKHKGGSKYVLSTEIRNILRSVFQKEQRIIQK 315
Query: 387 LIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKS 446
L E + +D+ FI++L+VPP R S E+S+N+L +IL + S
Sbjct: 316 LFHSRPHHNEHVTSDVFFIQALIVPPTRFRLPSKLGDEIHENSQNELLSNILKT-----S 370
Query: 447 VIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQI 506
+++ N + S L L + N+L NS+ +Q +V+ +D+ N N G
Sbjct: 371 LLIRDLNDQISSLQKGKLSIDERKIIFNRLMNSFVTVQNDVNAFIDSSKNQNAPAGKIPN 430
Query: 507 DGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTP 566
G+KQ L+ K G+ R++MMGKRVN+A RSVI+PDP L + IGVP FAK LTYP PVT
Sbjct: 431 PGIKQALEKKEGLFRKHMMGKRVNYAARSVISPDPMLETNEIGVPPVFAKKLTYPEPVTS 490
Query: 567 WNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
+N + LR+ VINGP+ +PGA IQNEDGS++ + QR++LA +L+TP
Sbjct: 491 YNASELRQAVINGPDKWPGAIQIQNEDGSLISLIGMTLEQRKTLANQLLTP 541
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 64/91 (70%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP L + IGVP FAK LTYP PVT +N + LR+ VINGP+ +PGA IQ
Sbjct: 455 YAARSVISPDPMLETNEIGVPPVFAKKLTYPEPVTSYNASELRQAVINGPDKWPGAIQIQ 514
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQ 104
NEDGS++ + QR++LA +L+TP + +
Sbjct: 515 NEDGSLISLIGMTLEQRKTLANQLLTPSNGE 545
>gi|430813363|emb|CCJ29286.1| unnamed protein product [Pneumocystis jirovecii]
Length = 576
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 168/565 (29%), Positives = 281/565 (49%), Gaps = 82/565 (14%)
Query: 117 QEVVPEILKLKY--YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPC 174
Q V E+ + + YT QE++++SV ++ +P+ F+ LGH GGLYDLA+GP++ R C
Sbjct: 5 QPVSAEVFSVNFGFYTSQEIEKISVKQIVNPVIFDYLGHPSKGGLYDLALGPVN-RSTLC 63
Query: 175 TTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQI 234
+TC + C GH GHI LP+P + LF + LL+ +C C+ + ++ L+ ++
Sbjct: 64 STCHLDERYCPGHFGHISLPIPTYHPLFLSQLYRLLRATCLYCYHFKLSSSVVDLYYCKL 123
Query: 235 KLLDAGYVTQAKDLEETLFNEENLRL------HPAQLVQLVDSHVQSILAHGTKICDIND 288
+LLDAG + ++++++ +++++++ H + + +S+VQ L N
Sbjct: 124 RLLDAGLLYESQEIDR-IYSKDDIEADDSNFKHNLSIFKRRESYVQECLTKS------NI 176
Query: 289 YKGG-----------EELRSAFVAQVLSRHVKRKCIFCAT----------------PINA 321
+ GG L F+ +++SR +KC C++ P++
Sbjct: 177 FLGGLMQNKLIDSEKRNLIKEFLEKIVSR---KKCDNCSSISPNFRKDGYVKIFELPLSK 233
Query: 322 ISYQQRKIIKSFKID-----KDNLDQSL---DKSLNKSSNQIIRKR-------------- 359
+Q I+ +I+ K+N+ Q L + SL S + K+
Sbjct: 234 KHQEQMNILGKVRINVLLETKENMGQKLSNGNDSLKYSQDNFRDKKSIKQDHFLSESAIY 293
Query: 360 -------EQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKEL-IATDIMFIRSLVVP 411
YV+ +E+ ++L+ NE + L + I D FI + VP
Sbjct: 294 KTFEASNHPRYVLPTEIRNHLRRLFVNEQKIMALLYKGSYKSDNFSITPDFFFIDVIAVP 353
Query: 412 PNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDT 471
P RP S+ E+ +N+L IL SC ++ + N S L++ D
Sbjct: 354 PTKFRPASVVATDIHENVQNELLSKILQSCLRIREL-----NDSASSLINNKDYFENKDY 408
Query: 472 LNNKLQNSWHELQYNVDLLMDAKLN-INKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVN 530
+ L N++ +LQ++V+ +D+ N N G G+KQ L+ K G+ R++MMGKRVN
Sbjct: 409 NFDILINAFVQLQHDVNSFIDSNRNPTNLPQGRLPPPGIKQTLEKKEGLFRKHMMGKRVN 468
Query: 531 FAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 590
+A RSVI+PDP + + IGVP FA LTYP PVTP+NV LLR VINGP +PGA +Q
Sbjct: 469 YAARSVISPDPNIETNEIGVPPVFAMKLTYPEPVTPYNVDLLRHAVINGPAKWPGAIQVQ 528
Query: 591 NEDGSVVRISSSQAVQRESLAKRLI 615
EDG ++ + +R ++A L+
Sbjct: 529 LEDGHMISLLRKTFEERVAIANTLL 553
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 55/85 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP + + IGVP FA LTYP PVTP+NV LLR VINGP +PGA +Q
Sbjct: 469 YAARSVISPDPNIETNEIGVPPVFAMKLTYPEPVTPYNVDLLRHAVINGPAKWPGAIQVQ 528
Query: 74 NEDGSVVRISSSQAVQRESLAKRLI 98
EDG ++ + +R ++A L+
Sbjct: 529 LEDGHMISLLRKTFEERVAIANTLL 553
>gi|302307745|ref|NP_984470.2| ADR374Cp [Ashbya gossypii ATCC 10895]
gi|299789146|gb|AAS52294.2| ADR374Cp [Ashbya gossypii ATCC 10895]
gi|374107684|gb|AEY96592.1| FADR374Cp [Ashbya gossypii FDAG1]
Length = 1640
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 173/536 (32%), Positives = 274/536 (51%), Gaps = 65/536 (12%)
Query: 133 EVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIE 192
E++ LSV ++ +P + LGH I GGLYDL++G + C TCG + C GH GHIE
Sbjct: 23 EIRALSVKQITNPTVLDHLGHPIRGGLYDLSLGAFLR--NLCATCGLDEKFCSGHQGHIE 80
Query: 193 LPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETL 252
LPVP + LFF + + L+ SC CH + A + ++KLL G + +A L++
Sbjct: 81 LPVPCYSPLFFNQLYIYLRSSCLYCHHFRLKAVEVHRYACKLKLLQYGLIDEAYKLDDLT 140
Query: 253 FN-------EENLRLH--PAQLV--------QLVDSHVQSILA------HGTKICDINDY 289
EE + + A LV + VD+ + L+ +GT +ND
Sbjct: 141 VGGVASDEAEEEGKENDVSAALVAELKMRRREYVDTEIAKALSDGRTSKYGTFTATVNDE 200
Query: 290 KGGEELRSAFVAQVLSRHVKRKCIFCA-----------TPI--NAISYQQ------RKII 330
+ + L F ++L+R KC C T I A++ +Q + +I
Sbjct: 201 R--KNLIHEFHKKILARP---KCDNCGMFSPKFRKDGFTKIFETALTEKQLTNNRVKGLI 255
Query: 331 KSFKIDKDNLDQSL------DKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFL 384
+ I K + L D+ + S + K Y++++EV + ++ NE + L
Sbjct: 256 REDMIRKQQQSKRLAGETVDDEPQSGRSANLKPKTGSTYILSTEVRNILRAVFKNEQVVL 315
Query: 385 KCLI---PVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSC 441
+ + P L T L+ D+ F+ +VVPP R S E+++N+L IL +
Sbjct: 316 QYVFNSRPNLKKT--LVKADMFFMEVIVVPPTRFRLPSKLGDEVHENTQNQLLSKILTT- 372
Query: 442 GSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTT 501
S+++ N+E S L + + + N+L N++ +Q +V+ +D+ T
Sbjct: 373 ----SLLIRDLNEEMSKLQKDKVSLEDRKIIFNRLMNAFVTIQNDVNAFIDSTKAQGSTG 428
Query: 502 GAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYP 561
G I G+KQ L+ K G+ R++MMGKRVN+A RSVI+PDP + + IGVP FA LTYP
Sbjct: 429 GKVPIPGVKQALEKKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFATKLTYP 488
Query: 562 VPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
PVT +N+ +R+ VINGP+ +PGA IQNEDGS+V + + QR++LA +L+TP
Sbjct: 489 EPVTAYNIAEMRQAVINGPDKWPGATQIQNEDGSLVSLVGMTSDQRKALANQLMTP 544
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 66/100 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP + + IGVP FA LTYP PVT +N+ +R+ VINGP+ +PGA IQ
Sbjct: 458 YAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTAYNIAEMRQAVINGPDKWPGATQIQ 517
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI 113
NEDGS+V + + QR++LA +L+TP + +K+
Sbjct: 518 NEDGSLVSLVGMTSDQRKALANQLMTPSTHGSTHTLNKKV 557
>gi|150866448|ref|XP_001386054.2| alpha subunit of RNA polymerase I [Scheffersomyces stipitis CBS
6054]
gi|149387704|gb|ABN68025.2| alpha subunit of RNA polymerase I [Scheffersomyces stipitis CBS
6054]
Length = 1644
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 167/531 (31%), Positives = 267/531 (50%), Gaps = 55/531 (10%)
Query: 130 TDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+D E+++LS ++ +P F++LGH I GLYDLA+G + CTTCG + C GH+G
Sbjct: 20 SDDEIRKLSAKQITNPTVFDNLGHPIGSGLYDLALGAFLR--NVCTTCGLDEKFCPGHLG 77
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLE 249
HIELPVPV N LFF + +LL+ +C CH + + A + ++L+ G + + +LE
Sbjct: 78 HIELPVPVYNPLFFNQLYILLRSTCLYCHHLKLNALEVHKYKCALRLIQYGLLLEVVELE 137
Query: 250 ETLFNEENLRL-----------HPAQ------LVQLVDSHVQSILAHG-TKICDINDYKG 291
++ H A+ + V++ + L+ G T +
Sbjct: 138 NMYARGQSHEEDDDEDSSSGLDHKAKQELMDRREEFVNTAIAKALSEGRTSESGVITATV 197
Query: 292 GEELRSA---FVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFK--IDKDNLDQSLDK 346
GEE + F ++LSR KC C + + ++++ K F+ + + + K
Sbjct: 198 GEERKHTVHDFYKRLLSRP---KCDNCG--MYSPTFRKDGFTKIFENSLTDKQITNNRVK 252
Query: 347 SLNKSSN--------------------QIIRKREQGYVMASEVEADFKKLWTNEHLFLKC 386
LN+ I K YV++SE+ + L+ NE +
Sbjct: 253 GLNRPDMLRNGAATSTNSTSSSSSDMPNIKHKGGSKYVLSSEIRNILRALFVNEQDVFQM 312
Query: 387 LIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKS 446
+ KE + DI F ++L+VPP R S E+++N+L +IL + ++
Sbjct: 313 VFHSRPYQKETVVADIFFRQALLVPPTRFRLPSKLGDEIHENAQNELLSNILKTALLIRD 372
Query: 447 VIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQI 506
+ N + S L+ + + N+L NS+ LQ +V+ +D+ N N G
Sbjct: 373 L-----NDQISSLVKGKISLDERKIVFNRLMNSFVTLQNDVNAFIDSTKNQNSPAGKVPN 427
Query: 507 DGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTP 566
G+KQ L+ K G+ R++MMGKRVN+A RSVI+PDP + + IGVP FAK LTYP PVT
Sbjct: 428 PGIKQALEKKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFAKKLTYPEPVTA 487
Query: 567 WNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
N LR+ VINGP+ +PGA +QNEDGS++ + QR+++A +L+TP
Sbjct: 488 HNAAELRRAVINGPDKWPGAIQVQNEDGSLISLIGMTLEQRKTIANQLLTP 538
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 61/89 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP + + IGVP FAK LTYP PVT N LR+ VINGP+ +PGA +Q
Sbjct: 452 YAARSVISPDPNIETNEIGVPPVFAKKLTYPEPVTAHNAAELRRAVINGPDKWPGAIQVQ 511
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPED 102
NEDGS++ + QR+++A +L+TP +
Sbjct: 512 NEDGSLISLIGMTLEQRKTIANQLLTPSN 540
>gi|255713026|ref|XP_002552795.1| KLTH0D01628p [Lachancea thermotolerans]
gi|238934175|emb|CAR22357.1| KLTH0D01628p [Lachancea thermotolerans CBS 6340]
Length = 1654
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 171/554 (30%), Positives = 275/554 (49%), Gaps = 80/554 (14%)
Query: 130 TDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
T Q+++ S +++ +P ++LGH I GGLYDLA+G + C TCG + C GH G
Sbjct: 20 TAQDIRNFSAMQITNPTVLDNLGHPISGGLYDLALGAFLR--NLCATCGLDEKFCPGHQG 77
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLE 249
HIELPVP N LFF + + L+ SC CH + A+ + ++KLL G + + L+
Sbjct: 78 HIELPVPCYNPLFFSQLYIFLRSSCLYCHGFRLKASEVHRYACKLKLLQYGLIDECYKLD 137
Query: 250 E-----------TLFNEENLRLHPAQLV-------------QLVDSHVQSILA------H 279
E ++ P++LV + VD + + ++ +
Sbjct: 138 ELRVGTLQTAVDEAEEDDGDDDKPSKLVDVALLRELKVKRREFVDISIATAISEGRTSYN 197
Query: 280 GTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCA-----------TPINAISYQQRK 328
GT +ND + + L F ++LSR KC C T I S +++
Sbjct: 198 GTFTATVNDER--KALIHDFYKRLLSRP---KCDNCGMFSPKFRKDGFTKIFETSLTEKQ 252
Query: 329 --------IIKSFKIDKDNLDQSL-------------DKSLNKSSNQIIR-KREQGYVMA 366
+I++ I K + L D+ + S + R K Y+++
Sbjct: 253 QTNNRVKGLIRADMIKKQQQRRKLADDQNSAGEPMEVDEDFDNSRDASARPKTGSTYILS 312
Query: 367 SEVEADFKKLWTNEHLFLKCLI---PVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQM 423
+EV + ++ E L+ + P L +K+L+ D+ F+ ++VPP R S
Sbjct: 313 TEVRNILRSVFKKEQEVLQYVFHSRPNL--SKKLVRADMFFLEVVIVPPTRFRLPSKLGE 370
Query: 424 PPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHEL 483
E+++N+L IL + S+++ N+E S L + + + N+L N++ +
Sbjct: 371 EIHENTQNQLLSKILTT-----SLLIRDLNEEMSKLQKDKVSVEDKKVIFNRLMNAFVTI 425
Query: 484 QYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYL 543
Q +V+ +D+ T G I G+KQ L+ K G+ R++MMGKRVN+A RSVI+PDP +
Sbjct: 426 QNDVNAFIDSTKAQGNTGGKVPIPGVKQALEKKEGLFRKHMMGKRVNYAARSVISPDPNI 485
Query: 544 NIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQ 603
+ IGVP FA LTYP PVT +N+ LR+ VINGP+ +PGA IQNEDGS+V +
Sbjct: 486 ETNEIGVPPVFATKLTYPEPVTSYNIAELRQAVINGPDKWPGATQIQNEDGSLVSLVGMT 545
Query: 604 AVQRESLAKRLITP 617
QR++LA +L+TP
Sbjct: 546 TEQRKALANQLLTP 559
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 65/100 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP + + IGVP FA LTYP PVT +N+ LR+ VINGP+ +PGA IQ
Sbjct: 473 YAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTSYNIAELRQAVINGPDKWPGATQIQ 532
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI 113
NEDGS+V + QR++LA +L+TP + +K+
Sbjct: 533 NEDGSLVSLVGMTTEQRKALANQLLTPSSHSATHSLNKKV 572
>gi|448106653|ref|XP_004200803.1| Piso0_003410 [Millerozyma farinosa CBS 7064]
gi|448109741|ref|XP_004201434.1| Piso0_003410 [Millerozyma farinosa CBS 7064]
gi|359382225|emb|CCE81062.1| Piso0_003410 [Millerozyma farinosa CBS 7064]
gi|359382990|emb|CCE80297.1| Piso0_003410 [Millerozyma farinosa CBS 7064]
Length = 1639
Score = 242 bits (617), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 171/523 (32%), Positives = 262/523 (50%), Gaps = 46/523 (8%)
Query: 133 EVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIE 192
E+++LS ++ +P F++LGH I GGLYDLA+G + C TCG + C GH GHIE
Sbjct: 23 EIRRLSAKQITNPTVFDNLGHPINGGLYDLALGAFLR--NLCRTCGLDEKFCPGHQGHIE 80
Query: 193 LPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETL 252
LPVP N +FF + L+ C CH + + + +++L+ G + + +++ +
Sbjct: 81 LPVPAYNPMFFNQFYVFLRSCCLYCHHFRLNSVEVHRYECKLRLIQYGLLLECVEMD-NM 139
Query: 253 FNEE--------------NLRLHPAQLVQLVDSHVQSI-LAHGTKICDINDYKGG----- 292
F ++ N P L++ + +A I + + G
Sbjct: 140 FTKKSSSHGDGEEDEDDGNDSASPQAKKDLMERREHFVNMAIAKAISEGRSSEYGVVTAS 199
Query: 293 --EELRSA---FVAQVLSRHVKRKCIFCATPINAISYQQ-------RKIIKSFKIDK--- 337
EE ++ F ++LSR C + Y + K I + ++
Sbjct: 200 IMEERKATIYEFYKKLLSRPKCDNCGMFSPAFRKDGYSKIFENALKEKQITNNRVKGLSR 259
Query: 338 -DNLDQSLDKSLNKSSN--QIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTT 394
D L + S N + N I K YV++SEV K ++ E ++ L
Sbjct: 260 PDMLRKGEKSSKNNNENIPNIKHKSGSKYVISSEVRNILKSVFEVEQRIIQKLFHSRPYQ 319
Query: 395 KELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNK 454
KE ++ DI FI++LVVP R S E+S+N+L +IL + +K + + N
Sbjct: 320 KETVSADIFFIQTLVVPATRFRLPSKVGEEIHENSQNELLSNILKTSLLIKDLNDQISNV 379
Query: 455 EQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLD 514
E+ L + K I N+L N + LQ +V+ +D+ N N G G+KQ L+
Sbjct: 380 EKGKLSVDERKIIF-----NRLMNGFVTLQNDVNAFIDSTKNPNAPAGKAPNPGVKQALE 434
Query: 515 GKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRK 574
K G+ R++MMGKRVN+A RSVI+PDP L + IG+P FAK LTYP PVT +NV+ LRK
Sbjct: 435 KKEGLFRKHMMGKRVNYAARSVISPDPMLETNEIGLPPVFAKKLTYPEPVTSYNVSELRK 494
Query: 575 MVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
VINGP+ +PGA IQNEDGS+V + QR++LA +L+TP
Sbjct: 495 AVINGPDKWPGAVQIQNEDGSLVSLIGMTLEQRKTLANQLLTP 537
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 63/87 (72%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP L + IG+P FAK LTYP PVT +NV+ LRK VINGP+ +PGA IQ
Sbjct: 451 YAARSVISPDPMLETNEIGLPPVFAKKLTYPEPVTSYNVSELRKAVINGPDKWPGAVQIQ 510
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS+V + QR++LA +L+TP
Sbjct: 511 NEDGSLVSLIGMTLEQRKTLANQLLTP 537
>gi|398366307|ref|NP_014986.3| Rpa190p [Saccharomyces cerevisiae S288c]
gi|2507346|sp|P10964.2|RPA1_YEAST RecName: Full=DNA-directed RNA polymerase I subunit RPA190;
AltName: Full=DNA-directed RNA polymerase I 190 kDa
polypeptide; Short=A190; AltName: Full=DNA-directed RNA
polymerase I largest subunit
gi|1199844|emb|CAA65029.1| O6276 [Saccharomyces cerevisiae]
gi|1420741|emb|CAA99665.1| RPA190 [Saccharomyces cerevisiae]
gi|151945418|gb|EDN63661.1| RNA polymerase A [Saccharomyces cerevisiae YJM789]
gi|256272592|gb|EEU07571.1| Rpa190p [Saccharomyces cerevisiae JAY291]
gi|285815209|tpg|DAA11102.1| TPA: Rpa190p [Saccharomyces cerevisiae S288c]
gi|392296668|gb|EIW07770.1| Rpa190p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 1664
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 173/564 (30%), Positives = 276/564 (48%), Gaps = 89/564 (15%)
Query: 130 TDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
T +E++ LS ++ +P ++LGH + GGLYDLA+G + C+TCG + C GH G
Sbjct: 20 TAKEIRNLSAKQITNPTVLDNLGHPVSGGLYDLALGAFLR--NLCSTCGLDEKFCPGHQG 77
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYV------- 242
HIELPVP N LFF + + L+ SC CH + + + +++LL G +
Sbjct: 78 HIELPVPCYNPLFFNQLYIYLRASCLFCHHFRLKSVEVHRYACKLRLLQYGLIDESYKLD 137
Query: 243 ------------------------------TQAKDLEETLFNEENLRLHPAQLVQLVDSH 272
Q+KD+ TL NE L+ ++ V + +
Sbjct: 138 EITLGSLNSSMYTDDEAIEDNEDEMDGEGSKQSKDISSTLLNE--LKSKRSEYVDMAIAK 195
Query: 273 VQS---ILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCA-----------TP 318
S G+ +ND + ++L F ++LSR KC C T
Sbjct: 196 ALSDGRTTERGSFTATVNDER--KKLVHEFHKKLLSRG---KCDNCGMFSPKFRKDGFTK 250
Query: 319 INAISYQQRKI----IKSF-------------KIDKDNLDQSLDK-SLNKSSNQIIR-KR 359
I + +++I +K F K+D N + D+ S + N R K
Sbjct: 251 IFETALNEKQITNNRVKGFIRQDMIKKQKQAKKLDGSNEASANDEESFDVGRNPTTRPKT 310
Query: 360 EQGYVMASEVEADFKKLWTNEHLFLKCLI---PVLDTTKELIATDIMFIRSLVVPPNNLR 416
Y++++EV+ ++ E L+ + P L +++L+ D F+ LVVPP R
Sbjct: 311 GSTYILSTEVKNILDTVFRKEQCVLQYVFHSRPNL--SRKLVKADSFFMDVLVVPPTRFR 368
Query: 417 PLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKL 476
S E+S+N+L +L + S+++ N + S L + + + ++L
Sbjct: 369 LPSKLGEEVHENSQNQLLSKVLTT-----SLLIRDLNDDLSKLQKDKVSLEDRRVIFSRL 423
Query: 477 QNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSV 536
N++ +Q +V+ +D+ +T+G I G+KQ L+ K G+ R++MMGKRVN+A RSV
Sbjct: 424 MNAFVTIQNDVNAFIDSTKAQGRTSGKVPIPGVKQALEKKEGLFRKHMMGKRVNYAARSV 483
Query: 537 ITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSV 596
I+PDP + + IGVP FA LTYP PVT +N+ LR+ VINGP+ +PGA IQNEDGS+
Sbjct: 484 ISPDPNIETNEIGVPPVFAVKLTYPEPVTAYNIAELRQAVINGPDKWPGATQIQNEDGSL 543
Query: 597 VRISSSQAVQRESLAKRLITPEGN 620
V + QR++LA +L+TP N
Sbjct: 544 VSLIGMSVEQRKALANQLLTPSSN 567
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 65/100 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP + + IGVP FA LTYP PVT +N+ LR+ VINGP+ +PGA IQ
Sbjct: 478 YAARSVISPDPNIETNEIGVPPVFAVKLTYPEPVTAYNIAELRQAVINGPDKWPGATQIQ 537
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI 113
NEDGS+V + QR++LA +L+TP + +K+
Sbjct: 538 NEDGSLVSLIGMSVEQRKALANQLLTPSSNVSTHTLNKKV 577
>gi|172215|gb|AAA34890.1| RNA polymerase A(I) large subunit [Saccharomyces cerevisiae]
Length = 1664
Score = 241 bits (616), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 173/564 (30%), Positives = 276/564 (48%), Gaps = 89/564 (15%)
Query: 130 TDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
T +E++ LS ++ +P ++LGH + GGLYDLA+G + C+TCG + C GH G
Sbjct: 20 TAKEIRNLSAKQITNPTVLDNLGHPVSGGLYDLALGAFLR--NLCSTCGLDEKFCPGHQG 77
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYV------- 242
HIELPVP N LFF + + L+ SC CH + + + +++LL G +
Sbjct: 78 HIELPVPCYNPLFFNQLYIYLRASCLFCHHFRLKSVEVHRYACKLRLLQYGLIDESYKLD 137
Query: 243 ------------------------------TQAKDLEETLFNEENLRLHPAQLVQLVDSH 272
Q+KD+ TL NE L+ ++ V + +
Sbjct: 138 EITLGSLNSSMYTDDEAIEDTEDEMDGEGSKQSKDISSTLLNE--LKSKRSEYVDMAIAK 195
Query: 273 VQS---ILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCA-----------TP 318
S G+ +ND + ++L F ++LSR KC C T
Sbjct: 196 ALSDGRTTERGSFTATVNDER--KKLVHEFHKKLLSRG---KCDNCGMFSPKFRKDGFTK 250
Query: 319 INAISYQQRKI----IKSF-------------KIDKDNLDQSLDK-SLNKSSNQIIR-KR 359
I + +++I +K F K+D N + D+ S + N R K
Sbjct: 251 IFETALNEKQITNNRVKGFIRQDMIKKQKQAKKLDGSNEASANDEESFDVGRNPTTRPKT 310
Query: 360 EQGYVMASEVEADFKKLWTNEHLFLKCLI---PVLDTTKELIATDIMFIRSLVVPPNNLR 416
Y++++EV+ ++ E L+ + P L +++L+ D F+ LVVPP R
Sbjct: 311 GSTYILSTEVKNILDTVFRKEQCVLQYVFHSRPNL--SRKLVKADSFFMDVLVVPPTRFR 368
Query: 417 PLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKL 476
S E+S+N+L +L + S+++ N + S L + + + ++L
Sbjct: 369 LPSKLGEEVHENSQNQLLSKVLTT-----SLLIRDLNDDLSKLQKDKVSLEDRRVIFSRL 423
Query: 477 QNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSV 536
N++ +Q +V+ +D+ +T+G I G+KQ L+ K G+ R++MMGKRVN+A RSV
Sbjct: 424 MNAFVTIQNDVNAFIDSTKAQGRTSGKVPIPGVKQALEKKEGLFRKHMMGKRVNYAARSV 483
Query: 537 ITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSV 596
I+PDP + + IGVP FA LTYP PVT +N+ LR+ VINGP+ +PGA IQNEDGS+
Sbjct: 484 ISPDPNIETNEIGVPPVFAVKLTYPEPVTAYNIAELRQAVINGPDKWPGATQIQNEDGSL 543
Query: 597 VRISSSQAVQRESLAKRLITPEGN 620
V + QR++LA +L+TP N
Sbjct: 544 VSLIGMSVEQRKALANQLLTPSSN 567
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 65/100 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP + + IGVP FA LTYP PVT +N+ LR+ VINGP+ +PGA IQ
Sbjct: 478 YAARSVISPDPNIETNEIGVPPVFAVKLTYPEPVTAYNIAELRQAVINGPDKWPGATQIQ 537
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI 113
NEDGS+V + QR++LA +L+TP + +K+
Sbjct: 538 NEDGSLVSLIGMSVEQRKALANQLLTPSSNVSTHTLNKKV 577
>gi|349581488|dbj|GAA26646.1| K7_Rpa190p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 1664
Score = 241 bits (616), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 173/564 (30%), Positives = 276/564 (48%), Gaps = 89/564 (15%)
Query: 130 TDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
T +E++ LS ++ +P ++LGH + GGLYDLA+G + C+TCG + C GH G
Sbjct: 20 TAKEIRNLSAKQITNPTVLDNLGHPVSGGLYDLALGAFLR--NLCSTCGLDEKFCPGHQG 77
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYV------- 242
HIELPVP N LFF + + L+ SC CH + + + +++LL G +
Sbjct: 78 HIELPVPCYNPLFFNQLYIYLRASCLFCHHFRLKSVEVHRYACKLRLLQYGLIDESYKLD 137
Query: 243 ------------------------------TQAKDLEETLFNEENLRLHPAQLVQLVDSH 272
Q+KD+ TL NE L+ ++ V + +
Sbjct: 138 EITLGSLNSSMYTDDEAIEDNEDEMDGEGSKQSKDISSTLLNE--LKSKRSEYVDMAIAK 195
Query: 273 VQS---ILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCA-----------TP 318
S G+ +ND + ++L F ++LSR KC C T
Sbjct: 196 ALSDGRTTERGSFTATVNDER--KKLVHEFHKKLLSRG---KCDNCGMFSPKFRKDGFTK 250
Query: 319 INAISYQQRKI----IKSF-------------KIDKDNLDQSLDK-SLNKSSNQIIR-KR 359
I + +++I +K F K+D N + D+ S + N R K
Sbjct: 251 IFETALNEKQITNNRVKGFIRQDMIKKQKQAKKLDGSNEASANDEESFDVGRNPTTRPKT 310
Query: 360 EQGYVMASEVEADFKKLWTNEHLFLKCLI---PVLDTTKELIATDIMFIRSLVVPPNNLR 416
Y++++EV+ ++ E L+ + P L +++L+ D F+ LVVPP R
Sbjct: 311 GSTYILSTEVKNILDTVFRKEQCVLQYVFHSRPNL--SRKLVKADSFFMDVLVVPPTRFR 368
Query: 417 PLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKL 476
S E+S+N+L +L + S+++ N + S L + + + ++L
Sbjct: 369 LPSKLGEEVHENSQNQLLSKVLTT-----SLLIRDLNDDLSKLQKDKVSLEDRRVIFSRL 423
Query: 477 QNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSV 536
N++ +Q +V+ +D+ +T+G I G+KQ L+ K G+ R++MMGKRVN+A RSV
Sbjct: 424 MNAFVTIQNDVNAFIDSTKAQGRTSGKVPIPGVKQALEKKEGLFRKHMMGKRVNYAARSV 483
Query: 537 ITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSV 596
I+PDP + + IGVP FA LTYP PVT +N+ LR+ VINGP+ +PGA IQNEDGS+
Sbjct: 484 ISPDPNIETNEIGVPPVFAVKLTYPEPVTAYNIAELRQAVINGPDKWPGATQIQNEDGSL 543
Query: 597 VRISSSQAVQRESLAKRLITPEGN 620
V + QR++LA +L+TP N
Sbjct: 544 VSLIGMSVEQRKALANQLLTPSSN 567
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 65/100 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP + + IGVP FA LTYP PVT +N+ LR+ VINGP+ +PGA IQ
Sbjct: 478 YAARSVISPDPNIETNEIGVPPVFAVKLTYPEPVTAYNIAELRQAVINGPDKWPGATQIQ 537
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI 113
NEDGS+V + QR++LA +L+TP + +K+
Sbjct: 538 NEDGSLVSLIGMSVEQRKALANQLLTPSSNVSTHTLNKKV 577
>gi|259149818|emb|CAY86622.1| Rpa190p [Saccharomyces cerevisiae EC1118]
Length = 1664
Score = 241 bits (615), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 173/564 (30%), Positives = 276/564 (48%), Gaps = 89/564 (15%)
Query: 130 TDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
T +E++ LS ++ +P ++LGH + GGLYDLA+G + C+TCG + C GH G
Sbjct: 20 TAKEIRNLSAKQITNPTVLDNLGHPVSGGLYDLALGAFLR--NLCSTCGLDEKFCPGHQG 77
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYV------- 242
HIELPVP N LFF + + L+ SC CH + + + +++LL G +
Sbjct: 78 HIELPVPCYNPLFFNQLYIYLRASCLFCHHFRLKSVEVHRYACKLRLLQYGLIDESYKLD 137
Query: 243 ------------------------------TQAKDLEETLFNEENLRLHPAQLVQLVDSH 272
Q+KD+ TL NE L+ ++ V + +
Sbjct: 138 EITLGSLNSSMYTDDEAIEDNEDEMDGEGSKQSKDISSTLLNE--LKSKRSEYVDMAIAK 195
Query: 273 VQS---ILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCA-----------TP 318
S G+ +ND + ++L F ++LSR KC C T
Sbjct: 196 ALSDGRTTERGSFTATVNDER--KKLVHEFHKKLLSRG---KCDNCGMFSPKFRKDGFTK 250
Query: 319 INAISYQQRKI----IKSF-------------KIDKDNLDQSLDK-SLNKSSNQIIR-KR 359
I + +++I +K F K+D N + D+ S + N R K
Sbjct: 251 IFETALNEKQITNNRVKGFIRQDMIKKQKQAKKLDGSNEASANDEESFDVGRNPTTRPKT 310
Query: 360 EQGYVMASEVEADFKKLWTNEHLFLKCLI---PVLDTTKELIATDIMFIRSLVVPPNNLR 416
Y++++EV+ ++ E L+ + P L +++L+ D F+ LVVPP R
Sbjct: 311 GSTYILSTEVKNILDTVFRKEQCVLQYVFHSRPNL--SRKLVKADSFFMDVLVVPPTRFR 368
Query: 417 PLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKL 476
S E+S+N+L +L + S+++ N + S L + + + ++L
Sbjct: 369 LPSKLGEEVHENSQNQLLSKVLTT-----SLLIRDLNDDLSKLQKDKVSLEDRRVIFSRL 423
Query: 477 QNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSV 536
N++ +Q +V+ +D+ +T+G I G+KQ L+ K G+ R++MMGKRVN+A RSV
Sbjct: 424 MNAFVTIQNDVNAFIDSTKAQGRTSGKVPIPGVKQALEKKEGLFRKHMMGKRVNYAARSV 483
Query: 537 ITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSV 596
I+PDP + + IGVP FA LTYP PVT +N+ LR+ VINGP+ +PGA IQNEDGS+
Sbjct: 484 ISPDPNIETNEIGVPPVFAVKLTYPEPVTAYNIAELRQAVINGPDKWPGATQIQNEDGSL 543
Query: 597 VRISSSQAVQRESLAKRLITPEGN 620
V + QR++LA +L+TP N
Sbjct: 544 VSLIGMSVEQRKALANQLLTPSSN 567
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 65/100 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP + + IGVP FA LTYP PVT +N+ LR+ VINGP+ +PGA IQ
Sbjct: 478 YAARSVISPDPNIETNEIGVPPVFAVKLTYPEPVTAYNIAELRQAVINGPDKWPGATQIQ 537
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI 113
NEDGS+V + QR++LA +L+TP + +K+
Sbjct: 538 NEDGSLVSLIGMSVEQRKALANQLLTPSSNVSTHTLNKKV 577
>gi|302901596|ref|XP_003048471.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256729404|gb|EEU42758.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 1674
Score = 241 bits (615), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 171/580 (29%), Positives = 274/580 (47%), Gaps = 110/580 (18%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNY 181
E ++ + + +E++ +SV ++ + TF++L + +PGGLYD A+G + PCTTC N
Sbjct: 12 ESVEFTFLSPKEIRSISVKRIENDSTFDNLLNPVPGGLYDPALGSWGDA--PCTTCNLNQ 69
Query: 182 TKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGY 241
+ C GH GHI+LPVPV + +F LLK +C C +P ++ ++KLL G
Sbjct: 70 STCPGHAGHIQLPVPVYHPVFMDQAYRLLKAACVYCKGFRLPQKELHKYVCKLKLLQHGL 129
Query: 242 VTQA--------KDLE---------ETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKI- 283
+ +A DL E+ EE + + D +V L G K+
Sbjct: 130 IQEAHIVGAIGENDLAIELGDFSGLESEAEEEGDSNSIDNVTRARDRYVDKCL-RGIKVK 188
Query: 284 ---CDINDYKGGEELRSAFVAQVLSRHVKRK-CIFCA--TPINAISYQQRKII------- 330
++G E+R + + L+ KR+ C C +P SY++ + +
Sbjct: 189 RGETKRGKHEGASEMRRDIIKEFLAEITKRRICASCGGISP----SYRKDRFVKVFERSL 244
Query: 331 ----------KSFK--------------------------------------IDKDNLDQ 342
K+FK D+D DQ
Sbjct: 245 SDKEKAKMAQKNFKQADAMARVHQATTKQRPDGYSSDEGVADVGSPTREKAQTDEDGADQ 304
Query: 343 SLDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLI---PVLDTTKELIA 399
D ++ + +R Y+ A EV+A +L+T E + L P + ++ + +
Sbjct: 305 DTDMPDADTTAAAVPQR---YISAMEVQARLNELFTKEQELMALLYNAKPAIRSSSK-VT 360
Query: 400 TDIMFIRSLVVPPNNLRPLSMEQMPPV-EHSRNKLYQSILYSCGSLKSVIMAMKNKEQSD 458
D+ F+ L+VPPN RP + + E +N LY++IL CG + + +K +E++D
Sbjct: 361 PDMFFLTILMVPPNRYRPEARTGEAQISEAQQNSLYKNILRGCGRIAQLHAYLK-EERAD 419
Query: 459 LLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLN-INKTTGAHQIDGLKQMLDGKT 517
+ N+L +W ELQ +V+ L+D N + DG+KQ L+ K
Sbjct: 420 V--------------NQLHQAWTELQESVNALIDKDKNPVQGAAAKRNEDGIKQKLEKKE 465
Query: 518 GMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVI 577
G+ R+NMMGKRVN+A RSVI+PDP + + IGVP FAK LTYP PVT N +++ VI
Sbjct: 466 GLFRKNMMGKRVNYAARSVISPDPNIETNEIGVPPVFAKKLTYPEPVTSHNFRDMQQAVI 525
Query: 578 NGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
NG + +PGA I+NE+G +V + + R SLA +L+ P
Sbjct: 526 NGVDKWPGAFAIENENGQIVNLRNKSVDDRVSLANQLLAP 565
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 56/87 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP + + IGVP FAK LTYP PVT N +++ VING + +PGA I+
Sbjct: 479 YAARSVISPDPNIETNEIGVPPVFAKKLTYPEPVTSHNFRDMQQAVINGVDKWPGAFAIE 538
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NE+G +V + + R SLA +L+ P
Sbjct: 539 NENGQIVNLRNKSVDDRVSLANQLLAP 565
>gi|297266454|ref|XP_002808090.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I
subunit RPA1-like [Macaca mulatta]
Length = 1722
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 170/526 (32%), Positives = 272/526 (51%), Gaps = 55/526 (10%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P +SLG+ GLYDLA+GP + + C+TC ++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSK-EVCSTCVQDFNNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELP+ V N L F + LLL+ SC CH + P L + Q+++L+ G + +L
Sbjct: 79 GHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSIL---------AHGTKICDINDYKGGEELRS 297
E L F EEN +++ + ++ + I+ AH +C E +S
Sbjct: 139 ERILNRFLEENADPSASEIQEELEQYTAEIVQNNLLGSQGAHVKNVC---------ESKS 189
Query: 298 AFVAQVLSRHV-KRKCIFCATPINAISYQQR-KIIKSF-KIDKDNLDQSLDKSLNKSSNQ 354
A H+ ++C C T + + + K+ +F + Q + L Q
Sbjct: 190 KLTAVFWKAHMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQ 249
Query: 355 IIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDT--TKELIATDIMFIRSLVVPP 412
+ ++ GY+ + LW NE FL L +D + + F+ LVVPP
Sbjct: 250 MGKR---GYLTPTSAREHLFALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPP 306
Query: 413 NNLRPLSM--EQMPPVEHSRNKLYQSILYSCGSLKSVI--MAMKNK-----------EQS 457
+ RP+S +QM + N Q+++ ++ ++ MA + K E+
Sbjct: 307 SRYRPVSRLGDQMFTNGQTVN--LQAVMKDVVLIRKLLALMAQEQKLPEEVAAPPPDEEK 364
Query: 458 DLL----SEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQML 513
D L L + G + +KL N W LQ +V+++ D++++ + G++Q+L
Sbjct: 365 DSLIAIDRSFLSTLPGQSFIDKLYNIWIRLQSHVNIVFDSEMD---KLMMDKYPGIRQIL 421
Query: 514 DGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVP--LEFAKTLTYPVPVTPWNVTL 571
+ K + R++MMGKRV++A RSVI D Y+N + IG+P FA LTYP PVTPWNV
Sbjct: 422 EKKERLFRKHMMGKRVDYAARSVICXDMYINTNEIGIPHFQVFATKLTYPQPVTPWNVQE 481
Query: 572 LRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
LR+ VINGPNV+PGA+M+ NEDGS +S+ QRE++AK+L+TP
Sbjct: 482 LRQAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTP 527
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 64/89 (71%), Gaps = 2/89 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVP--LEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANM 71
+ RSVI D Y+N + IG+P FA LTYP PVTPWNV LR+ VINGPNV+PGA+M
Sbjct: 439 YAARSVICXDMYINTNEIGIPHFQVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASM 498
Query: 72 IQNEDGSVVRISSSQAVQRESLAKRLITP 100
+ NEDGS +S+ QRE++AK+L+TP
Sbjct: 499 VINEDGSRTALSAVDMTQREAVAKQLLTP 527
>gi|254569378|ref|XP_002491799.1| RNA polymerase I subunit [Komagataella pastoris GS115]
gi|238031596|emb|CAY69519.1| RNA polymerase I subunit [Komagataella pastoris GS115]
gi|328351700|emb|CCA38099.1| DNA-directed RNA polymerase I subunit A1 [Komagataella pastoris CBS
7435]
Length = 1640
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 166/531 (31%), Positives = 269/531 (50%), Gaps = 58/531 (10%)
Query: 130 TDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
T +E+++LS +V +P F++LGH I GGLYDLA+G + C TCG + C GH G
Sbjct: 20 TTEEIRKLSAKQVVNPQVFDNLGHPIAGGLYDLALGAFLR--NLCGTCGLDERFCPGHQG 77
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLE 249
HIELPVP N LFF + L L+ +C C++ + + F +++LL G + + ++L+
Sbjct: 78 HIELPVPCYNPLFFNQLCLFLRSACVYCNRFKLKQSEVNFFACKLRLLQYGLMLECEELD 137
Query: 250 --------------ETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGG--- 292
+ + A L +L + V++ +A T + + + G
Sbjct: 138 GVSTGTKLEDIDVDDIDDGNDQGNGDDASLKRLRNEFVETAIA--TALSEGRTTEQGMTT 195
Query: 293 ---EELRSAFVAQVLSRHVKR-KCIFCATPINAISYQQRKIIKSF------KIDKDNLDQ 342
R A + SR + R KC C + + S+++ IK F K N +
Sbjct: 196 STIANERKAIIRSFNSRLLSRPKCDNCG--MYSPSFRKDGSIKLFENALTPKQISHNRVK 253
Query: 343 SLDKSLNKSSNQ----------------IIRKREQGYVMASEVEADFKKLWTNEHLFLKC 386
L + N+ I K Y++++EV +KL+ E LK
Sbjct: 254 GLTRETKFKQNEESAHSDDATPADNFPPIKTKSSFKYILSTEVRTIVRKLFITEKDVLKY 313
Query: 387 LIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKS 446
+ + +I+ D+ FI++L+VPP R S E+S+N+ IL + +++
Sbjct: 314 VFNARPNSNNIISADMFFIQALIVPPTRFRLPSKLGDEIHENSQNEQLSKILTTALTIRD 373
Query: 447 VIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQI 506
+ ++ ++ + +E K + N+L N++ +Q +V+ +D+ K+ A
Sbjct: 374 LNESIITVQKDQITAEERK-----IIFNRLMNAFVTIQDDVNSFIDS----TKSQNAQAN 424
Query: 507 DGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTP 566
G+KQ L+ K G+ R++MMGKRVN+A RSVI+PDP L + IGVP FAK LTYP PVT
Sbjct: 425 PGIKQALEKKEGLFRKHMMGKRVNYAARSVISPDPMLETNEIGVPPVFAKKLTYPEPVTA 484
Query: 567 WNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
+N LR+ +INGP+V+PGA IQNEDG V + QR+++A +L+TP
Sbjct: 485 YNAASLRQAIINGPDVWPGAIQIQNEDGRHVSLIGMTLEQRKAIANQLLTP 535
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 61/89 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP L + IGVP FAK LTYP PVT +N LR+ +INGP+V+PGA IQ
Sbjct: 449 YAARSVISPDPMLETNEIGVPPVFAKKLTYPEPVTAYNAASLRQAIINGPDVWPGAIQIQ 508
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPED 102
NEDG V + QR+++A +L+TP +
Sbjct: 509 NEDGRHVSLIGMTLEQRKAIANQLLTPSN 537
>gi|190407636|gb|EDV10903.1| RNA polymerase I subunit [Saccharomyces cerevisiae RM11-1a]
Length = 1664
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 173/564 (30%), Positives = 276/564 (48%), Gaps = 89/564 (15%)
Query: 130 TDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
T +E++ LS ++ +P ++LGH + GGLYDLA+G + C+TCG + C GH G
Sbjct: 20 TAKEIRNLSAKQITNPTVLDNLGHPVSGGLYDLALGAFLR--NLCSTCGLDEKFCPGHQG 77
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYV------- 242
HIELPVP N LFF + + L+ SC CH + + + +++LL G +
Sbjct: 78 HIELPVPCYNPLFFNQLYIYLRASCLFCHHFRLKSVEVHRYACKLRLLQYGLIDESYKLD 137
Query: 243 ------------------------------TQAKDLEETLFNEENLRLHPAQLVQLVDSH 272
Q+KD+ TL NE L+ ++ V + +
Sbjct: 138 EITLGSLNSSMYTDDEAIEDNEDEMDGEGSKQSKDISFTLLNE--LKSKRSEYVDMAIAK 195
Query: 273 VQS---ILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCA-----------TP 318
S G+ +ND + ++L F ++LSR KC C T
Sbjct: 196 ALSDGRTTERGSFTATVNDER--KKLVHEFHKKLLSRG---KCDNCGMFSPKFRKDGFTK 250
Query: 319 INAISYQQRKI----IKSF-------------KIDKDNLDQSLDK-SLNKSSNQIIR-KR 359
I + +++I +K F K+D N + D+ S + N R K
Sbjct: 251 IFETALNEKQITNNRVKGFIRQDMIKKQKQAKKLDGSNEASANDEESFDVGRNPTTRPKT 310
Query: 360 EQGYVMASEVEADFKKLWTNEHLFLKCLI---PVLDTTKELIATDIMFIRSLVVPPNNLR 416
Y++++EV+ ++ E L+ + P L +++L+ D F+ LVVPP R
Sbjct: 311 GSTYILSTEVKNILDTVFRKEQCVLQYVFHSRPNL--SRKLVKADSFFMDVLVVPPTRFR 368
Query: 417 PLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKL 476
S E+S+N+L +L + S+++ N + S L + + + ++L
Sbjct: 369 LPSKLGEEVHENSQNQLLSKVLTT-----SLLIRDLNDDLSKLQKDKVSLEDRRVIFSRL 423
Query: 477 QNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSV 536
N++ +Q +V+ +D+ +T+G I G+KQ L+ K G+ R++MMGKRVN+A RSV
Sbjct: 424 MNAFVTIQNDVNAFIDSTKAQGRTSGKVPIPGVKQALEKKEGLFRKHMMGKRVNYAARSV 483
Query: 537 ITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSV 596
I+PDP + + IGVP FA LTYP PVT +N+ LR+ VINGP+ +PGA IQNEDGS+
Sbjct: 484 ISPDPNIETNEIGVPPVFAVKLTYPEPVTAYNIAELRQAVINGPDKWPGATQIQNEDGSL 543
Query: 597 VRISSSQAVQRESLAKRLITPEGN 620
V + QR++LA +L+TP N
Sbjct: 544 VSLIGMSVEQRKALANQLLTPSSN 567
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 65/100 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP + + IGVP FA LTYP PVT +N+ LR+ VINGP+ +PGA IQ
Sbjct: 478 YAARSVISPDPNIETNEIGVPPVFAVKLTYPEPVTAYNIAELRQAVINGPDKWPGATQIQ 537
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI 113
NEDGS+V + QR++LA +L+TP + +K+
Sbjct: 538 NEDGSLVSLIGMSVEQRKALANQLLTPSSNVSTHTLNKKV 577
>gi|326426598|gb|EGD72168.1| Crp22 [Salpingoeca sp. ATCC 50818]
Length = 1617
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 166/520 (31%), Positives = 261/520 (50%), Gaps = 68/520 (13%)
Query: 132 QEVKQLSVVKVFSPITFNS-LGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
+ +K++SV ++ P++F+ LGH + GGLYD A+GP + D C TCG C GH+GH
Sbjct: 23 ESIKRVSVKRITDPVSFDPVLGHPVRGGLYDPALGPTDNK-DRCETCGLLGVHCPGHLGH 81
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
+ELP+ V + ++F + LLL+ +C CH++ L Q KLL+ V AK+L+E
Sbjct: 82 VELPLYVYHPMYFDRLFLLLRATCLHCHRLKATRFQLRLLQCQHKLLENQCVVAAKELQE 141
Query: 251 TLFNEENLRLHP-AQLVQLVDSHVQSIL--------------AHGTKICDINDYKGGEEL 295
+ L P AQ+ + +D+ + L H T+ + YK EL
Sbjct: 142 ------RIDLVPVAQVFEFLDTFTEDALKGIKRPTTAAGKRAVHTTRNIHVLKYKN--EL 193
Query: 296 RSAFVAQVLSRHVKRKCIFCATPINAISYQ--QRKIIKSFKIDKDNLDQSLDKSLNKSSN 353
F+++ + R C C+ IS + Q IK F D + K ++K N
Sbjct: 194 NEEFLSKCVH---ARSCPHCS----CISRRLLQENAIKVFMQAVARADTEMAK-MSKQPN 245
Query: 354 QIIRKREQGYVMASEVEADFKKLWTNEHLFLKC------LIPVL------DTTKEL---I 398
R ++ E+ D HL LKC +P + D T L
Sbjct: 246 PPPRSWYGRQYVSPELARD--------HL-LKCEELDNETLPKMYASLLKDKTSGLQRRF 296
Query: 399 ATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQS- 457
++ F++++ VPPN RP++ +E+ R ++ C ++ ++ N+E +
Sbjct: 297 TAEVFFVKAISVPPNRFRPVNFLNGQSIENERTIALADVVKDCVAIDELVRHDPNQESAP 356
Query: 458 -DLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGK 516
S A+ R +L +WH LQ +V++ MD+ L+ T G++Q L+ K
Sbjct: 357 GKATSRAMTEKR---YRERLTQAWHALQEHVNVFMDSSLSPRMTDAK----GIRQGLERK 409
Query: 517 TGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMV 576
G+ R NMMGKRVN+A R+VI+PDP + IG+P FA+TLTYP PVTPWN+ LR+ V
Sbjct: 410 EGLFRMNMMGKRVNYAARTVISPDPLIGTHEIGIPDVFARTLTYPQPVTPWNMKYLRQCV 469
Query: 577 INGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLIT 616
ING + YPGA +Q+EDG ++ + R S+A +L+T
Sbjct: 470 INGADQYPGATHVQDEDGRMISLKYLSEESRISVADQLLT 509
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 65/104 (62%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ R+VI+PDP + IG+P FA+TLTYP PVTPWN+ LR+ VING + YPGA +Q
Sbjct: 424 YAARTVISPDPLIGTHEIGIPDVFARTLTYPQPVTPWNMKYLRQCVINGADQYPGATHVQ 483
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKIITRQ 117
+EDG ++ + R S+A +L+T + + K KI+ R
Sbjct: 484 DEDGRMISLKYLSEESRISVADQLLTRKTKTLGRSHKCKIVHRH 527
>gi|312068462|ref|XP_003137225.1| hypothetical protein LOAG_01639 [Loa loa]
Length = 1707
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 171/565 (30%), Positives = 272/565 (48%), Gaps = 79/565 (13%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
L+L+ Y E++++SV+++ TF+ +GH + GGLYD +GP+ E D C TC T
Sbjct: 18 LQLRCYLPHEIERISVLRITETKTFDEIGHPVSGGLYDSRLGPL-ETFDTCETCHQQGTY 76
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKI--NIPATSQLLFINQIKLLDAGY 241
C GH+GHI+L VPV + L F L+ +C CH++ N L + Q++ LD G
Sbjct: 77 CPGHMGHIQLDVPVFSPLLFGFTFSLMNGTCVQCHRLTCNSSGLPAKLLLAQLRALDLGL 136
Query: 242 VTQAKDLEETLFNEENLRLHPA-----------------QLVQLVDSHVQSILAHGTKIC 284
V+ A++L + + + P +L +D + I A+ +
Sbjct: 137 VSIAQELGGFVKDHFSAESEPGTLHGNAPTLSDEISACKELDNFLDKFNEQIGANIDRNQ 196
Query: 285 DINDYKGGEELRSAFVAQVLSRHV---KRKCIFCATPINAI----------------SYQ 325
I K ELR + + + +R+C C I S +
Sbjct: 197 SI-PVKNALELRRSLIRNFCKEQLFKRRRRCKLCNRSNGIIRNDGGRCILIDFGGTSSIK 255
Query: 326 QRKIIKSF-------KIDKDNLDQSLDKS-----------------LNKSSNQIIRKREQ 361
+ K F ID +D D L SS QI+R++ Q
Sbjct: 256 RHKQTSRFASIENIGNIDGQEVDADQDMKTEEDEKKFSSNGTAYGLLANSSEQILREQMQ 315
Query: 362 GYVM----------ASEVEADFKKLWTNEHLFLKCLIPVLDTTKEL-IATDIMFIRSLVV 410
+V+ +EV F+ LW N+ L+ L PV D+ + D++F +++V
Sbjct: 316 -WVLKGNCNKLAWRGAEVREHFRILWQNDGPLLRKLFPVFDSKDDKHCPLDVLFCEAVLV 374
Query: 411 PPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGD 470
PP RP+ + + E+ ++ + +L + +++++ +A+ + LL+ + + G
Sbjct: 375 PPTKYRPVRIFKGDKFENPQSVNLRKLLEASETIRAIRLALSGNNEKALLNLVSENVLGQ 434
Query: 471 TLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAH-QIDGLKQMLDGKTGMIRQNMMGKRV 529
T+ K+ N++ LQ + + D L+ K T QI G+KQ+L+ K G+ R NMMGKRV
Sbjct: 435 TMQAKMHNAYLTLQQRMGAIFDQDLD--KWTDVRVQIPGIKQILEKKQGLFRMNMMGKRV 492
Query: 530 NFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 589
NFA RSVITPDPYL+ID IG+P FAK LT V N+ LRKM+ NGP+ +PGAN I
Sbjct: 493 NFACRSVITPDPYLDIDEIGIPEPFAKKLTVTETVNAMNLARLRKMIKNGPDFHPGANFI 552
Query: 590 QNEDGSVVRISSSQAVQRESLAKRL 614
Q +S ++A +R + AKRL
Sbjct: 553 QKPGRYTQVLSINKANERNAAAKRL 577
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 54/84 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVITPDPYL+ID IG+P FAK LT V N+ LRKM+ NGP+ +PGAN IQ
Sbjct: 494 FACRSVITPDPYLDIDEIGIPEPFAKKLTVTETVNAMNLARLRKMIKNGPDFHPGANFIQ 553
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+S ++A +R + AKRL
Sbjct: 554 KPGRYTQVLSINKANERNAAAKRL 577
>gi|393911384|gb|EFO26842.2| hypothetical protein LOAG_01639 [Loa loa]
Length = 1744
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 170/564 (30%), Positives = 270/564 (47%), Gaps = 77/564 (13%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
L+L+ Y E++++SV+++ TF+ +GH + GGLYD +GP+ E D C TC T
Sbjct: 18 LQLRCYLPHEIERISVLRITETKTFDEIGHPVSGGLYDSRLGPL-ETFDTCETCHQQGTY 76
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKI--NIPATSQLLFINQIKLLDAGY 241
C GH+GHI+L VPV + L F L+ +C CH++ N L + Q++ LD G
Sbjct: 77 CPGHMGHIQLDVPVFSPLLFGFTFSLMNGTCVQCHRLTCNSSGLPAKLLLAQLRALDLGL 136
Query: 242 VTQAKDLEETLFNEENLRLHPA-----------------QLVQLVDSHVQSILAHGTKIC 284
V+ A++L + + + P +L +D + I A+ +
Sbjct: 137 VSIAQELGGFVKDHFSAESEPGTLHGNAPTLSDEISACKELDNFLDKFNEQIGANIDRNQ 196
Query: 285 DINDYKGGEELRSAFVAQVLSRHV---KRKCIFCATPINAI----------------SYQ 325
I K ELR + + + +R+C C I S +
Sbjct: 197 SI-PVKNALELRRSLIRNFCKEQLFKRRRRCKLCNRSNGIIRNDGGRCILIDFGGTSSIK 255
Query: 326 QRKIIKSF-------KIDKDNLDQSLDKS-----------------LNKSSNQIIRKREQ 361
+ K F ID +D D L SS QI+R++ Q
Sbjct: 256 RHKQTSRFASIENIGNIDGQEVDADQDMKTEEDEKKFSSNGTAYGLLANSSEQILREQMQ 315
Query: 362 GYV---------MASEVEADFKKLWTNEHLFLKCLIPVLDTTKEL-IATDIMFIRSLVVP 411
+ +EV F+ LW N+ L+ L PV D+ + D++F +++VP
Sbjct: 316 WVLKGNCNKLAWRGAEVREHFRILWQNDGPLLRKLFPVFDSKDDKHCPLDVLFCEAVLVP 375
Query: 412 PNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDT 471
P RP+ + + E+ ++ + +L + +++++ +A+ + LL+ + + G T
Sbjct: 376 PTKYRPVRIFKGDKFENPQSVNLRKLLEASETIRAIRLALSGNNEKALLNLVSENVLGQT 435
Query: 472 LNNKLQNSWHELQYNVDLLMDAKLNINKTTGAH-QIDGLKQMLDGKTGMIRQNMMGKRVN 530
+ K+ N++ LQ + + D L+ K T QI G+KQ+L+ K G+ R NMMGKRVN
Sbjct: 436 MQAKMHNAYLTLQQRMGAIFDQDLD--KWTDVRVQIPGIKQILEKKQGLFRMNMMGKRVN 493
Query: 531 FAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 590
FA RSVITPDPYL+ID IG+P FAK LT V N+ LRKM+ NGP+ +PGAN IQ
Sbjct: 494 FACRSVITPDPYLDIDEIGIPEPFAKKLTVTETVNAMNLARLRKMIKNGPDFHPGANFIQ 553
Query: 591 NEDGSVVRISSSQAVQRESLAKRL 614
+S ++A +R + AKRL
Sbjct: 554 KPGRYTQVLSINKANERNAAAKRL 577
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 54/84 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVITPDPYL+ID IG+P FAK LT V N+ LRKM+ NGP+ +PGAN IQ
Sbjct: 494 FACRSVITPDPYLDIDEIGIPEPFAKKLTVTETVNAMNLARLRKMIKNGPDFHPGANFIQ 553
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+S ++A +R + AKRL
Sbjct: 554 KPGRYTQVLSINKANERNAAAKRL 577
>gi|365989414|ref|XP_003671537.1| hypothetical protein NDAI_0H01200 [Naumovozyma dairenensis CBS 421]
gi|343770310|emb|CCD26294.1| hypothetical protein NDAI_0H01200 [Naumovozyma dairenensis CBS 421]
Length = 1669
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 176/565 (31%), Positives = 276/565 (48%), Gaps = 88/565 (15%)
Query: 130 TDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
T +E++QLS ++ +P ++LGH I GGLYDL++G + C++CG + C GH G
Sbjct: 20 TSEEIRQLSAKQITNPTVLDNLGHPISGGLYDLSLGAFLR--NLCSSCGLDEKFCPGHQG 77
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQA---- 245
HIELPVP N LFF + + L+ SC CH + + F +++LL G + ++
Sbjct: 78 HIELPVPCYNPLFFNQLYIYLRTSCLFCHHLKLKQIEVHRFACKLRLLQYGLIDESYKID 137
Query: 246 -------KDLEETLFNEENLRLH----------------PAQLV----QLVDSHVQSILA 278
KD E EE+ + AQL+ Q + +V+ ++A
Sbjct: 138 DINIGDLKDFLENAQAEEDEAIEDNKLNESTTKRDANDISAQLLRDLQQKREEYVEVVIA 197
Query: 279 ----------HGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCA-----------T 317
G +ND + + L F ++L+R KC C T
Sbjct: 198 TAISEGRTTERGIFTATVNDER--KNLIHEFHKKLLTRG---KCDNCGMFSPKFRKDGFT 252
Query: 318 PI--NAISYQQ------RKIIKSFKIDKDNLDQSLDKSLNKSS----------NQIIR-K 358
I A++ +Q R I+ I K N ++L+ K N +R K
Sbjct: 253 KIFETALNEKQLTNNRVRGFIRQDMIKKQNQSKALNGETTKDDENENGFDLGRNPTVRPK 312
Query: 359 REQGYVMASEVEADFKKLWTNEHLFLKCLI---PVLDTTKELIATDIMFIRSLVVPPNNL 415
Y++++EV + ++ E K + P + +T I+ D+ F+ +VVPP
Sbjct: 313 TGSTYILSTEVRNILRAVFRKEQNIFKYIFHSKPNVSSTP--ISADMFFMDVIVVPPTRF 370
Query: 416 RPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNK 475
R S E+S+N+L IL + ++ + N E S L + + + ++
Sbjct: 371 RLPSKLGDEIHENSQNQLLSKILTTALLIRDL-----NDEMSKLQKDKVSVDDRRVIFSR 425
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRS 535
L N++ +Q +V+ +D+ T G I G+KQ L+ K G+ R++MMGKRVN+A RS
Sbjct: 426 LMNAFVTIQNDVNAFIDSTKAQGTTGGKVPIPGVKQALEKKEGLFRKHMMGKRVNYAARS 485
Query: 536 VITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGS 595
VI+PDP + + IGVP FA LTYP PVT +N+ LR+ VINGP+ +PGA IQNEDGS
Sbjct: 486 VISPDPNIETNEIGVPPVFATKLTYPEPVTSYNIAELRQAVINGPDKWPGAAQIQNEDGS 545
Query: 596 VVRISSSQAVQRESLAKRLITPEGN 620
+V + A QR++LA +L+TP N
Sbjct: 546 LVSLVGMSAEQRKALANQLMTPSSN 570
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 62/87 (71%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP + + IGVP FA LTYP PVT +N+ LR+ VINGP+ +PGA IQ
Sbjct: 481 YAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTSYNIAELRQAVINGPDKWPGAAQIQ 540
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS+V + A QR++LA +L+TP
Sbjct: 541 NEDGSLVSLVGMSAEQRKALANQLMTP 567
>gi|50312167|ref|XP_456115.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49645251|emb|CAG98823.1| KLLA0F23243p [Kluyveromyces lactis]
Length = 1653
Score = 238 bits (608), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 171/559 (30%), Positives = 272/559 (48%), Gaps = 85/559 (15%)
Query: 130 TDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
T E+++LS +V +P ++LGH I GGLYDLA+G + + C TCG + C GH G
Sbjct: 20 TSDEIRKLSAKQVTNPTVLDNLGHPIQGGLYDLALGAFLK--NLCATCGLDEKFCPGHQG 77
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLE 249
HIELPVP N LFF + + L+ SC CH + ++ L+ +++LL + + ++
Sbjct: 78 HIELPVPCYNPLFFNQLYIYLRSSCLFCHHFRLKSSEVHLYACKLRLLQYALIDERYQID 137
Query: 250 ETLFNE---------------------------ENLRLHPAQLVQLVDSHVQSILA---- 278
N+ LR + + VD + L+
Sbjct: 138 NIRINQMVDEDEAEEGEEEADINGKTTNSSGTQHALRELRRKRNEFVDMAIAKALSEGRT 197
Query: 279 --HGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCA-----------TPI--NAIS 323
HGT +ND + + L F ++LSR KC C T I A++
Sbjct: 198 TEHGTFTATVNDER--KALIHDFHKRLLSRP---KCDNCGMFSPKFRKDGFTKIFETALT 252
Query: 324 YQQ------RKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQG--------------- 362
+Q + +I+ I K N + L +N +S++ + E G
Sbjct: 253 DKQITNNRVKGLIRQDMIKKKNQMKKL--QVNDTSSESASRDEDGEFGTARSPVNLKPKT 310
Query: 363 ---YVMASEVEADFKKLWTNEHLFLK-CLIPVLDTTKELIATDIMFIRSLVVPPNNLRPL 418
Y++++EV + ++ +E L+ + K+++ D+ F+ L+VPP R
Sbjct: 311 GSTYILSTEVRNILRAVFRSEQEVLQYVFFSRPNHNKKIVTADMFFMEVLIVPPTRFRLP 370
Query: 419 SMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQN 478
S E+++N+L IL + S+++ N E S L + + + N+L N
Sbjct: 371 SKLGDEVHENTQNQLLSKILTT-----SLLIRDLNDEMSRLQKDKVSADDRKVIFNRLMN 425
Query: 479 SWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
++ +Q +V+ +D+ + + I GLKQ L+ K G+ R++MMGKRVN+A RSVI+
Sbjct: 426 AFVTIQNDVNAFIDSTKAQSSSGNKVPIPGLKQALEKKEGLFRKHMMGKRVNYAARSVIS 485
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVR 598
PDP + + IGVP FA LTYP PVT +NV LR+ VINGP+ +PGA IQNEDGS V
Sbjct: 486 PDPNIETNEIGVPPVFATKLTYPEPVTAYNVAELRQAVINGPDKWPGATQIQNEDGSFVS 545
Query: 599 ISSSQAVQRESLAKRLITP 617
+ QR++LA +L+TP
Sbjct: 546 LVGMTLEQRKALANQLLTP 564
Score = 99.4 bits (246), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 60/87 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP + + IGVP FA LTYP PVT +NV LR+ VINGP+ +PGA IQ
Sbjct: 478 YAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTAYNVAELRQAVINGPDKWPGATQIQ 537
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS V + QR++LA +L+TP
Sbjct: 538 NEDGSFVSLVGMTLEQRKALANQLLTP 564
>gi|190347356|gb|EDK39611.2| hypothetical protein PGUG_03709 [Meyerozyma guilliermondii ATCC
6260]
Length = 1632
Score = 238 bits (606), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 163/529 (30%), Positives = 269/529 (50%), Gaps = 52/529 (9%)
Query: 133 EVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIE 192
E++++S ++ +P F++LGH I GGLYDLA+G + C TCG + C GH GHIE
Sbjct: 23 EIRRISAKRISNPTVFDNLGHPINGGLYDLALGAFLR--NLCATCGLDEKFCPGHQGHIE 80
Query: 193 LPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETL 252
LP PV N LFF + +LL+ SC CH + + + ++KL+ G + + ++L+
Sbjct: 81 LPTPVYNPLFFNQMYILLRSSCLYCHHFRLNSLEVHRYECKLKLIQYGLLLECEELDNMF 140
Query: 253 FNEENL----------------RLHPAQLVQL-------VDSHVQSILAHGTKICD-IND 288
N ++ ++ P +L VD+ + ++ G + +
Sbjct: 141 VNGKSQAESDDDEEDDEVASSKQVDPKLKRELRHRRETFVDTCIAKAISEGRSSHNGVVT 200
Query: 289 YKGGEELRSAFVAQVLSRHVKR-KCIFCATPINAISYQQRKIIKSFK---IDK---DNLD 341
GEE R A + + R + R KC C + + ++++ K F+ DK +N
Sbjct: 201 ASVGEE-RKAILHEFSKRLLSRPKCDNCG--MYSPTFRKDGFTKIFENALRDKQVTNNRV 257
Query: 342 QSL-----------DKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPV 390
+ L + N S I K YV+++E+ + ++ E ++ +
Sbjct: 258 KGLVRPDMFKVGASSATSNGSMPNIKHKDGFKYVLSTEIRNILRAVFEKEQAIIQKMFHS 317
Query: 391 LDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMA 450
E + DI F+ +L+VP R S E+S+N+L ++L + ++ +
Sbjct: 318 RPFQTEKVTADIFFLHALIVPATRFRLPSKLGDEIHENSQNELLSNVLKTSLLIRDLNDQ 377
Query: 451 MKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLK 510
+ ++ L E K + N+L N++ +Q +V+ +D+ N N G G+K
Sbjct: 378 ISTMQKGKLSVEERK-----IIFNRLMNAFVTIQNDVNAFIDSTKNQNAPAGKVPNPGIK 432
Query: 511 QMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVT 570
Q L+ K G+ R++MMGKRVN+A RSVI+PDP L + IGVP FAK LTYP PVT +NV+
Sbjct: 433 QALEKKEGLFRKHMMGKRVNYAARSVISPDPMLETNEIGVPPVFAKKLTYPEPVTSYNVS 492
Query: 571 LLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPEG 619
LR+ VINGP +PGA +QNEDG++V + QR+++A +L+TP G
Sbjct: 493 QLRQAVINGPEKWPGATQVQNEDGTMVSLVGMTLEQRKAIANQLLTPSG 541
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 62/87 (71%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP L + IGVP FAK LTYP PVT +NV+ LR+ VINGP +PGA +Q
Sbjct: 453 YAARSVISPDPMLETNEIGVPPVFAKKLTYPEPVTSYNVSQLRQAVINGPEKWPGATQVQ 512
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDG++V + QR+++A +L+TP
Sbjct: 513 NEDGTMVSLVGMTLEQRKAIANQLLTP 539
>gi|213407078|ref|XP_002174310.1| DNA-directed RNA polymerase I subunit RPA1 [Schizosaccharomyces
japonicus yFS275]
gi|212002357|gb|EEB08017.1| DNA-directed RNA polymerase I subunit RPA1 [Schizosaccharomyces
japonicus yFS275]
Length = 1657
Score = 238 bits (606), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 178/580 (30%), Positives = 273/580 (47%), Gaps = 107/580 (18%)
Query: 117 QEVVPEILKLKY--YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPC 174
Q V EI +K+ + ++++++SV ++ +P+ ++L H GGLYDLA+GP + C
Sbjct: 5 QPVSSEIKSVKFGIFDVEDIEKISVKQIVNPVLLDNLNHPTSGGLYDLALGPYL-KNTVC 63
Query: 175 TTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQI 234
TC + C GH GHI LPVP + LFF + LL+ +C CH + + LF +
Sbjct: 64 ATCHMDERYCPGHFGHITLPVPAYHPLFFPQMYSLLRATCLYCHHFKLSKVTVHLFACRF 123
Query: 235 KLLDAGYVTQAKDLEE-TLFN-----------------------EENLRLHPAQLVQLVD 270
KLLD G + +++ +E TL N +++ A L++L D
Sbjct: 124 KLLDHGLLIESQRVESITLGNSVSSKSSGGKDGEGSESEDSGIGNDDMAKDAAALMRLRD 183
Query: 271 SHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCAT------------- 317
V +A KI +L AF + SR ++C C +
Sbjct: 184 EFVDKCIADAKKI----------KLVRAFFHAINSR---KQCDNCQSFSPTFRKEGFAKI 230
Query: 318 ---PINAISYQQ------------RKIIKSFKIDK------------DNLD------QSL 344
P+ + Q R KS K D+ D++D
Sbjct: 231 FEVPLTGKNLQYMEQTGRIRSNVLRDSAKSSKDDEGFSEDSNSEGEGDDIDLMEEDPNPF 290
Query: 345 DKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMF 404
DK L K R E Y+ ++EV ++L+T E + L + + D+ F
Sbjct: 291 DKKLKK------RSTEAKYMTSTEVRNHLRRLFTKEGRVMSLLFA--HKKGKPASADMFF 342
Query: 405 IRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSC---GSLKSVIMAMKNKEQSDLLS 461
+ ++ VPP RP S E+ +N+L IL S L + A +KE +
Sbjct: 343 LHNIAVPPTRFRPASKMGDEVHENIQNELLTKILQSSIRIADLSAATHATGDKEAME--- 399
Query: 462 EALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNIN-KTTGAHQIDGLKQMLDGKTGMI 520
RG +L ++ +LQ++V+ L+D+ N G G+KQ+L+ K G+
Sbjct: 400 ------RGSRAFEQLVAAFVQLQHDVNSLIDSGRNPTVMAQGRVPPPGIKQILEKKEGLF 453
Query: 521 RQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGP 580
R++MMGKRVN+A RSVI+PDP + + IGVP FA LT+P PVTP+N LRK VINGP
Sbjct: 454 RKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFAVKLTFPEPVTPYNYNELRKAVINGP 513
Query: 581 NVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPEGN 620
+ +PGA IQNEDG++V + QR +LA +L+TP+ N
Sbjct: 514 SKWPGATHIQNEDGTLVSLMPLTVEQRTALANQLMTPQSN 553
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 61/88 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP + + IGVP FA LT+P PVTP+N LRK VINGP+ +PGA IQ
Sbjct: 464 YAARSVISPDPNIETNEIGVPPVFAVKLTFPEPVTPYNYNELRKAVINGPSKWPGATHIQ 523
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPE 101
NEDG++V + QR +LA +L+TP+
Sbjct: 524 NEDGTLVSLMPLTVEQRTALANQLMTPQ 551
>gi|344231880|gb|EGV63759.1| alpha subunit of RNA polymerase I [Candida tenuis ATCC 10573]
Length = 1625
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 170/546 (31%), Positives = 275/546 (50%), Gaps = 59/546 (10%)
Query: 119 VVPEILKLKY--YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTT 176
V EI +++ +D+E++ LS ++ +PI F++LGH I GGLYDLA+G + + CTT
Sbjct: 7 VGSEITSVEFGVLSDKEIRNLSAKQITNPIVFDNLGHPITGGLYDLALGAFLK--NLCTT 64
Query: 177 CGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKL 236
CG + C GH GHIELP+ V N LFF + L L+ SC CH + + F +++L
Sbjct: 65 CGLDDRFCPGHQGHIELPIAVYNPLFFNQLFLFLRSSCLYCHHFKLNSLEVHRFTCKLRL 124
Query: 237 LDAGYVTQAKDLEETLFNEENLR------------------LHP-------AQLVQLVDS 271
+ G + + +L+ + + + P A+ VD+
Sbjct: 125 IQYGLLLECTELDNMMIKGKGELDDEAEEGEEEDGFKTKSAIDPKAKKDLIARRELFVDT 184
Query: 272 HVQSILAHG-TKICDINDYKGGEELR---SAFVAQVLSRHVKRKCIFCATPINAISYQQR 327
+ + L+ G T + GEE + F ++LSR +C C + + S+++
Sbjct: 185 VIATALSEGRTSEGGVTTSTVGEERKLTIHEFYKRLLSRP---RCDNCG--MYSPSFRKD 239
Query: 328 KIIKSFK----------------IDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVEA 371
K F+ + D L S N S I K Y++++EV+
Sbjct: 240 GFTKLFENSLRDKQVANNRVRGLVRPDMLRNGSTTSKNDSMPNIKHKGGSKYILSTEVKN 299
Query: 372 DFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRN 431
++ E L + + ++ ++ F+ +LVVPP R S E+++N
Sbjct: 300 ILVSVFKKEKNVLNKVFNARPNPSKEVSAEMFFLTALVVPPTRFRLPSKLGDEVHENAQN 359
Query: 432 KLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLM 491
+L +IL +C ++ + N + + + + + L N+L NS+ +Q +V+ +
Sbjct: 360 ELLSNILKTCLLIRDL-----NDQITSVTKDKITIDDKKILFNRLMNSFVTIQNDVNAFI 414
Query: 492 DAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVP 551
D+ N N G + G+KQ L+ K G+ R++MMGKRVNFA RSVI+PDP L + IGVP
Sbjct: 415 DSTKNQNAPAGKMPVPGVKQALEKKEGLFRKHMMGKRVNFAARSVISPDPMLETNEIGVP 474
Query: 552 LEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLA 611
FAK LTYP PVT +N+ LRK VINGP+ +PGA +QNEDGS++ + QR ++A
Sbjct: 475 PVFAKKLTYPEPVTAYNINELRKAVINGPDKWPGAVQVQNEDGSLISLIGMNLEQRRTVA 534
Query: 612 KRLITP 617
+L+TP
Sbjct: 535 NQLLTP 540
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/89 (52%), Positives = 62/89 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP L + IGVP FAK LTYP PVT +N+ LRK VINGP+ +PGA +Q
Sbjct: 454 FAARSVISPDPMLETNEIGVPPVFAKKLTYPEPVTAYNINELRKAVINGPDKWPGAVQVQ 513
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPED 102
NEDGS++ + QR ++A +L+TP +
Sbjct: 514 NEDGSLISLIGMNLEQRRTVANQLLTPSN 542
>gi|322695488|gb|EFY87295.1| DNA-directed RNA polymerase I subunit RPA1 [Metarhizium acridum
CQMa 102]
Length = 1673
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 165/559 (29%), Positives = 266/559 (47%), Gaps = 85/559 (15%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNY 181
+ + + + +E++ +SV ++ + TF+SL + + GGLYD A+G + +PC TC
Sbjct: 12 DAVDFTFLSPEEIQAISVKRIENDSTFDSLLNPVHGGLYDPALGSWGD--EPCATCSLTS 69
Query: 182 TKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGY 241
+ C GH GHI+LP PV + +F LL+ +C C IP ++ +++LL G
Sbjct: 70 SSCPGHPGHIQLPAPVYHPVFMDQAYHLLRAACVYCKGFRIPPKDLHKYMCKLRLLQHGL 129
Query: 242 VTQAK-----------------DLEETLFNEENLRLHPAQLVQLVDSHVQSIL-AHGTKI 283
+ +A L+E+ +EEN + + + + +VQ L + +
Sbjct: 130 IREAHIVDALGEADWSEMEEALGLDESEADEENSSID--NVTRKREQYVQECLRSSALRR 187
Query: 284 CDI--NDYKGGEELRSAFVAQVLSRHVKRK-CIFCA--TPINAISYQQRKIIKSFK---- 334
D ++G + R + Q LS KR+ C CA +P SY++ + +K F+
Sbjct: 188 GDTRKGKHEGMAQARREIIKQFLSEITKRRQCASCAGISP----SYRKDRFVKIFEKSLS 243
Query: 335 ------------IDKDNLDQSLDKSLNKSSN-------QIIR-------------KREQG 362
KD + + D L+ ++ I+ Q
Sbjct: 244 PKEATKMALKNFARKDAMTRHYDAKLDPKADVETSEPDAIVEPLSDQDEEEPNDGATSQR 303
Query: 363 YVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKEL--IATDIMFIRSLVVPPNNLRPLS- 419
Y+ EV A +L+ E + L T+ I D+ FI +++VPPN RP +
Sbjct: 304 YISPMEVRARLSELFKKEQDIVSLLYNSKPRTRSSPDITPDMFFITTILVPPNRYRPEAR 363
Query: 420 MEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNS 479
M E +N LY+SIL C + V +K++E +D+ +L +
Sbjct: 364 MGDSQVTEAEQNSLYKSILRGCSKIARVYSVLKSEEHADI--------------TQLHQA 409
Query: 480 WHELQYNVDLLMDAKLN-INKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
W ELQ V+ L+D N + DG+KQ L+ K G+ R+NMMGKRVN+A RSVI+
Sbjct: 410 WTELQEGVNALIDKSKNPVQGAAAKRNEDGIKQKLEKKEGLFRKNMMGKRVNYAARSVIS 469
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVR 598
PDP + + IGVP FA+ LT+P PVT N +++ VING N +PGA I+NE+G V
Sbjct: 470 PDPNIETNEIGVPPVFAQKLTFPEPVTNHNFRDMQQAVINGANTWPGAVAIENENGQVQM 529
Query: 599 ISSSQAVQRESLAKRLITP 617
+ + +R SLA +L+ P
Sbjct: 530 LKNKSVDERISLANQLLAP 548
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 56/87 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP + + IGVP FA+ LT+P PVT N +++ VING N +PGA I+
Sbjct: 462 YAARSVISPDPNIETNEIGVPPVFAQKLTFPEPVTNHNFRDMQQAVINGANTWPGAVAIE 521
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NE+G V + + +R SLA +L+ P
Sbjct: 522 NENGQVQMLKNKSVDERISLANQLLAP 548
>gi|332023928|gb|EGI64146.1| DNA-directed RNA polymerase I subunit RPA1 [Acromyrmex echinatior]
Length = 592
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 158/470 (33%), Positives = 246/470 (52%), Gaps = 38/470 (8%)
Query: 109 MKEKIITRQEVVP---EILKLKY--YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLA 163
M K +Q + P + L+L + +T +V+ LSV K+ + ++FN LGH + GGLYD +
Sbjct: 1 MTSKYHHKQRLTPKHRDSLRLIFSVFTANDVRNLSVTKIITSLSFNILGHPLKGGLYDPS 60
Query: 164 MGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIP 223
+G + C+TCG+N +KC GH GHIELPVPV+N LF + + +LLKLSC C + IP
Sbjct: 61 LGTTKNSSELCSTCGHNSSKCPGHFGHIELPVPVVNPLFHKALSMLLKLSCLSCFTLQIP 120
Query: 224 ATSQLLFINQIKLLDAGYVTQAKDLE-------ETLFNEENLRLHPAQLVQLVDSHVQSI 276
+ + + L Y Q DL+ L N E + ++D+++Q+
Sbjct: 121 S---YIKLLLSAKLKLLYQGQLSDLDGLDHEVTSILSNIEQEEEQTEYIRNVIDTYMQNF 177
Query: 277 LAHG--TKICDIN-----DYKGGEELRSAFVAQVLSRHVKRK----CIFCATPINAISYQ 325
+I N + K A++ +L ++V+ C+ C + +S
Sbjct: 178 FNRNRYNQIMPQNPENQANIKSVIMQWHAYIENILKQYVRTNKAGICMNCHDSLPKMSTL 237
Query: 326 QRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLK 385
Q KI+ S K N + L S ++ K E +M + + ++LW NE FLK
Sbjct: 238 QNKIMISNKEIVKNSKEML-------SCEVAHKLEMIMIMPDQSKEYLRQLWHNERDFLK 290
Query: 386 CLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLK 445
++P L+ TDI F + V P +RP++ +EH + +Y+SI+ C L+
Sbjct: 291 IIVPCLELVDIEYPTDIFFFEVIPVLPPIVRPVNFLNGQMIEHPQTHIYKSIIQDCLVLR 350
Query: 446 SVIMAMKNKEQSDLLSEA---LKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTG 502
+VI +++ L E + I+G T KL N+W LQ NV+ LMD ++NK++
Sbjct: 351 NVIQTIQDGGIDHLPQEGRLVFEQIKGITAVEKLHNAWQALQSNVNHLMDR--DMNKSSE 408
Query: 503 AHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPL 552
+ GLKQ+L+ K G+IR +MMGKRVNFA R+VITPDP LNID IG+ +
Sbjct: 409 SINGQGLKQILEKKEGIIRMHMMGKRVNFAARTVITPDPNLNIDEIGIEM 458
>gi|358380112|gb|EHK17791.1| hypothetical protein TRIVIDRAFT_57534 [Trichoderma virens Gv29-8]
Length = 1640
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 160/539 (29%), Positives = 267/539 (49%), Gaps = 68/539 (12%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNY 181
E ++ + + +E++ +SV ++ + TF++L + +PGGLYD A+G + PC TC N
Sbjct: 12 ESVEFTFLSAKEIQAISVKRIENESTFDNLLNPVPGGLYDPALGSWGD--SPCATCNLNQ 69
Query: 182 TKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGY 241
+ C GH GHI+LPVPV + +F LL+ +C C +P + Q++LL G
Sbjct: 70 SSCPGHPGHIQLPVPVYHPVFLDQAYRLLRATCVYCKGFRLPPKDLHKYTCQLRLLHHGL 129
Query: 242 VTQA----------------KDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKI-- 283
+ +A + L E E+ + + + +V+ L G K+
Sbjct: 130 INEAHMVASIGENDLAIEIKEALGEGDSEAEDENSGADGVTRQREKYVRQCL-QGIKLKR 188
Query: 284 --CDINDYKGGEELRSAFVAQVLSRHVKRK-CIFCA--TPINAISYQQRKIIKSFKIDKD 338
++G E+R + + L+ +K++ C C +P +Y++ + +K F+
Sbjct: 189 GEVKRGKHEGANEMRREIIKEFLAEIIKKRVCSSCGGISP----TYRKDRFVKIFEKSLS 244
Query: 339 NLDQS-LDKSLNKSSNQIIRKREQG---------------YVMASEVEADFKKLWTNEHL 382
+++ + + K + + R E G Y+ + EV A ++L+ E
Sbjct: 245 TKEKAKMAQKALKWGDAMTRDIEMGDVNDDDFASEESSQRYISSMEVRARLEELFRKEQD 304
Query: 383 FLKCLIPVLDTTKEL--IATDIMFIRSLVVPPNNLRPLSMEQMPPV-EHSRNKLYQSILY 439
L + T+ + D+ FI ++VPPN RP + + E +N LY++IL
Sbjct: 305 LLSLVYNAKPPTQSSPKVTPDMFFITVVLVPPNRFRPEARTGDSQISEAQQNALYKNILG 364
Query: 440 SCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLN-IN 498
C S+ V N+++SD+ S + +W ELQ V+ L+D N +
Sbjct: 365 CCSSIARVY----NEKRSDITS--------------MHQAWTELQDAVNSLIDKNKNPVQ 406
Query: 499 KTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTL 558
A DG+KQ+L+ K G+ R+NMMGKRVN+A RSVI+PDP + + IGVP FAK L
Sbjct: 407 GAAAARNEDGIKQLLEKKEGLFRKNMMGKRVNYAARSVISPDPNIETNEIGVPPVFAKKL 466
Query: 559 TYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
TYP PVT N +++ VING + +PGA I+NE+G +V + + R SLA +L+ P
Sbjct: 467 TYPEPVTSHNFKDMQQAVINGVDKWPGAFAIENENGQIVNLRNKSVDDRISLANQLLAP 525
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 63/104 (60%), Gaps = 1/104 (0%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP + + IGVP FAK LTYP PVT N +++ VING + +PGA I+
Sbjct: 439 YAARSVISPDPNIETNEIGVPPVFAKKLTYPEPVTSHNFKDMQQAVINGVDKWPGAFAIE 498
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKIITRQ 117
NE+G +V + + R SLA +L+ P + A MK K + R
Sbjct: 499 NENGQIVNLRNKSVDDRISLANQLLAPTNSSA-ARMKNKKVHRH 541
>gi|408395819|gb|EKJ74992.1| hypothetical protein FPSE_04812 [Fusarium pseudograminearum CS3096]
Length = 1694
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 172/580 (29%), Positives = 276/580 (47%), Gaps = 109/580 (18%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNY 181
E ++ + + +E++ +SV ++ + TF++L + +PGGLYD A+G + PCTTC N
Sbjct: 12 ESVEFTFLSPKEIRAISVKRIENDSTFDNLLNPVPGGLYDPALGSWGDA--PCTTCNLNQ 69
Query: 182 TKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGY 241
C GH GHI+LPVPV + +F LLK +C C +P ++ ++KLL G
Sbjct: 70 ATCPGHPGHIQLPVPVYHPIFMDQAYRLLKATCVYCKGFRLPQKELHKYMCKLKLLQHGL 129
Query: 242 VTQAKDLEETLFNEENLRLHPAQL-------------------VQLVDSHVQSILAHGTK 282
+ +A + + E +L + + D +V L G K
Sbjct: 130 IQEAHMV--GVIGENDLAIELGNFSELESEAEEEGASSSIDSVTRARDKYVDKCL-RGIK 186
Query: 283 I----CDINDYKGGEELRSAFVAQVLSRHVKRK-CIFCATPINAIS--YQQRKIIKSF-- 333
I ++G E+R + + L+ KR+ C C N IS Y++ + +K F
Sbjct: 187 IKRGDTKRGKHEGSSEMRREVIKEFLAEITKRRLCANC----NGISPSYRKDRFVKVFER 242
Query: 334 --------KIDKDNLDQS---------------------------LDKSLNKS------- 351
K+ + NL QS + +L KS
Sbjct: 243 SLSDKEKAKMAQKNLRQSDAMARVQQATTKQKPDGYSSDEGVADVVSPTLEKSQLAGDDA 302
Query: 352 --SNQIIRKRE-------QGYVMASEVEADFKKLWTNEHLFLKCLI---PVLDTTKELIA 399
+++ E Q Y+ A EV A +L+T E + L P ++K+ +
Sbjct: 303 EQDTEMMDADEIPASSASQRYISAMEVHARLSELFTKEQELITLLYNAKPATRSSKK-VT 361
Query: 400 TDIMFIRSLVVPPNNLRPLSMEQMPPV-EHSRNKLYQSILYSCGSLKSVIMAMKNKEQSD 458
++ F+ +++VPPN RP + + E +N LY++IL CG++ + +K +E +D
Sbjct: 362 PEMFFLTTILVPPNRYRPEARTGESEISEAQQNSLYKNILRGCGTIARLHKQLK-EENAD 420
Query: 459 LLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLN-INKTTGAHQIDGLKQMLDGKT 517
+ N+L +W ELQ +V+ L+D N + DG+KQ L+ K
Sbjct: 421 V--------------NQLHQAWTELQDSVNSLIDKDKNPVQGAAAKRNEDGIKQKLEKKE 466
Query: 518 GMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVI 577
G+ R+NMMGKRVN+A RSVI+PDP + + IGVP FAK LTYP PVT N +++ VI
Sbjct: 467 GLFRKNMMGKRVNYAARSVISPDPNIETNEIGVPPVFAKKLTYPEPVTSHNFRDMQQAVI 526
Query: 578 NGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
NG + +PGA I+NE+G +V + + R SLA +L+ P
Sbjct: 527 NGVDKWPGAFAIENENGQIVNLRNKSVDDRVSLANQLLAP 566
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 56/87 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP + + IGVP FAK LTYP PVT N +++ VING + +PGA I+
Sbjct: 480 YAARSVISPDPNIETNEIGVPPVFAKKLTYPEPVTSHNFRDMQQAVINGVDKWPGAFAIE 539
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NE+G +V + + R SLA +L+ P
Sbjct: 540 NENGQIVNLRNKSVDDRVSLANQLLAP 566
>gi|342887287|gb|EGU86828.1| hypothetical protein FOXB_02655 [Fusarium oxysporum Fo5176]
Length = 1676
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 169/581 (29%), Positives = 271/581 (46%), Gaps = 111/581 (19%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNY 181
E ++ + + +E++ +SV ++ +P TF++L + +PGGLYD A+G + PCTTC N
Sbjct: 12 ESVEFTFLSPKEIRAISVKRIENPETFDNLLNPVPGGLYDPALGSWGDA--PCTTCNLNQ 69
Query: 182 TKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGY 241
C GH GHI+LPVPV + +F LLK +C C +P ++ Q+KLL G
Sbjct: 70 ATCPGHAGHIQLPVPVYHPVFMDQAYRLLKAACVYCKGFRLPQKELHKYVCQLKLLQHGL 129
Query: 242 VTQAKDLEETLFNEENLRLHP-----------------AQLVQLVDSHVQSILAHGTKI- 283
+ +A + NE + L + + D +V L+ G KI
Sbjct: 130 IQEAHVVGAIGDNELAIELGDFSELESEAEEEGGTNSIDNVTRARDKYVDKCLS-GIKIK 188
Query: 284 ---CDINDYKGGEELRSAFVAQVLSRHVKRK-CIFCA--TPINAISYQQRKII------- 330
++G E+R + + L+ KR+ C C +P SY++ + +
Sbjct: 189 RGDTKRGKHEGSSEMRREIIKEFLAEITKRRVCASCGGISP----SYRKDRFVKVFERSL 244
Query: 331 ----------KSFK--------------------------------------IDKDNLDQ 342
K+FK ++ D DQ
Sbjct: 245 SDKDKAKMAQKNFKQADAMARVHQAATKQKPDGYSSDEGVADVASPTRETSRVNGDVTDQ 304
Query: 343 SLDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLI----PVLDTTKELI 398
D + + Q Y+ A EV A +L+T E + L P +TK +
Sbjct: 305 --DTEMIDADTASTSSSPQRYISAMEVRARLNELFTKEQELVSLLYNAKPPTRSSTK--V 360
Query: 399 ATDIMFIRSLVVPPNNLRPLSMEQMPPV-EHSRNKLYQSILYSCGSLKSVIMAMKNKEQS 457
D+ F+ +++VPPN RP + + E +N LY++IL CG++ + ++ +E++
Sbjct: 361 TPDMFFLTTILVPPNRYRPEARTGESEISEAQQNSLYKNILRGCGTIARLHRELQ-EEKA 419
Query: 458 DLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLN-INKTTGAHQIDGLKQMLDGK 516
D+ N++ + ELQ +V+ L+D N + DG+KQ L+ K
Sbjct: 420 DV--------------NRMHQASAELQESVNALIDKNKNPVQGAAAKRNEDGIKQKLEKK 465
Query: 517 TGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMV 576
G+ R+NMMGKRVN+A RSVI+PDP + + IGVP FAK LTYP PVT N +++ V
Sbjct: 466 EGLFRKNMMGKRVNYAARSVISPDPNIETNEIGVPPVFAKKLTYPEPVTSHNFRDMQQAV 525
Query: 577 INGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
ING + +PGA I+NE+G +V + + R SLA +L+ P
Sbjct: 526 INGVDKWPGAFAIENENGQIVNLRNKSVDDRVSLANQLLAP 566
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 56/87 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP + + IGVP FAK LTYP PVT N +++ VING + +PGA I+
Sbjct: 480 YAARSVISPDPNIETNEIGVPPVFAKKLTYPEPVTSHNFRDMQQAVINGVDKWPGAFAIE 539
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NE+G +V + + R SLA +L+ P
Sbjct: 540 NENGQIVNLRNKSVDDRVSLANQLLAP 566
>gi|444515209|gb|ELV10798.1| DNA-directed RNA polymerase I subunit RPA1 [Tupaia chinensis]
Length = 1683
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 169/522 (32%), Positives = 268/522 (51%), Gaps = 78/522 (14%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P +SLG+ GLYDLA+GP + + C+TC ++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSK-EVCSTCVQDFNHCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELP+ V N L F + LLL+ SC CH + P L + Q+++L G + +L
Sbjct: 79 GHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLVCQLRVLAVGALQAVYEL 138
Query: 249 EETL--FNEEN-----------LRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEEL 295
E L F EEN L + A++VQ ++ + S AH +C E
Sbjct: 139 ERILNRFLEENADPSAFEIQEELEQYTAKIVQ--NNLLGSQGAHVKNVC---------ES 187
Query: 296 RSAFVAQVLSRHVK-RKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQ 354
RS +A H+ ++C C T R +++ + + L +
Sbjct: 188 RSNLIAHFWKTHMAAKRCPHCKT--------GRSVVR----------KEHNSKLTITYPA 229
Query: 355 IIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTT--KELIATDIMFIRSLVVPP 412
++ ++ A + E + + N HLFL LD + + F+ LVVPP
Sbjct: 230 MVHRK------AVQKETEPAGFFLN-HLFLG-----LDDVGMESRFNPSMFFLDFLVVPP 277
Query: 413 NNLRPLSM--EQMPPVEHSRN-----------KLYQSILYSCGSLKSVIMAMKNKEQSD- 458
+ RP++ +QM + N + +++ L + A+ E+ D
Sbjct: 278 SRYRPVNRLGDQMFTNGQTVNLQAVMKDIVLIRKLLALMAQEQKLPREVAALTTDEEKDS 337
Query: 459 ---LLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDG 515
+ L + G +L +KL N W LQ +V+++ D++++ + G++Q+L+
Sbjct: 338 SIVMDRSFLSALPGQSLTDKLYNIWIRLQSHVNIVFDSEMD---KLMMEKYPGIRQILEK 394
Query: 516 KTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKM 575
K G+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+
Sbjct: 395 KEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQA 454
Query: 576 VINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
VINGP V+PGA M+ NEDGS +S+ QRE++AK+L+TP
Sbjct: 455 VINGPGVHPGAAMVINEDGSRTALSAVDVTQREAVAKQLLTP 496
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 64/87 (73%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGP V+PGA M+
Sbjct: 410 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPGVHPGAAMVI 469
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +S+ QRE++AK+L+TP
Sbjct: 470 NEDGSRTALSAVDVTQREAVAKQLLTP 496
>gi|146416717|ref|XP_001484328.1| hypothetical protein PGUG_03709 [Meyerozyma guilliermondii ATCC
6260]
Length = 1632
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 162/529 (30%), Positives = 268/529 (50%), Gaps = 52/529 (9%)
Query: 133 EVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIE 192
E++++S ++ +P F++LGH I GGLYDLA+G + C TCG + C GH GHIE
Sbjct: 23 EIRRISAKRISNPTVFDNLGHPINGGLYDLALGAFLR--NLCATCGLDEKFCPGHQGHIE 80
Query: 193 LPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETL 252
LP PV N LFF + +LL+ C CH + + + ++KL+ G + + ++L+
Sbjct: 81 LPTPVYNPLFFNQMYILLRSLCLYCHHFRLNSLEVHRYECKLKLIQYGLLLECEELDNMF 140
Query: 253 FNEENL----------------RLHPAQLVQL-------VDSHVQSILAHGTKICD-IND 288
N ++ ++ P +L VD+ + ++ G + +
Sbjct: 141 VNGKSQAESDDDEEDDEVASSKQVDPKLKRELRHRRETFVDTCIAKAISEGRSSHNGVVT 200
Query: 289 YKGGEELRSAFVAQVLSRHVKR-KCIFCATPINAISYQQRKIIKSFK---IDK---DNLD 341
GEE R A + + R + R KC C + + ++++ K F+ DK +N
Sbjct: 201 ASVGEE-RKAILHEFSKRLLSRPKCDNCG--MYSPTFRKDGFTKIFENALRDKQVTNNRV 257
Query: 342 QSL-----------DKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPV 390
+ L + N S I K YV+++E+ + ++ E ++ +
Sbjct: 258 KGLVRPDMFKVGASSATSNGSMPNIKHKDGFKYVLSTEIRNILRAVFEKEQAIIQKMFHS 317
Query: 391 LDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMA 450
E + DI F+ +L+VP R S E+S+N+L ++L + ++ +
Sbjct: 318 RPFQTEKVTADIFFLHALIVPATRFRLPSKLGDEIHENSQNELLSNVLKTSLLIRDLNDQ 377
Query: 451 MKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLK 510
+ ++ L E K + N+L N++ +Q +V+ +D+ N N G G+K
Sbjct: 378 ISTMQKGKLSVEERK-----IIFNRLMNAFVTIQNDVNAFIDSTKNQNAPAGKVPNPGIK 432
Query: 511 QMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVT 570
Q L+ K G+ R++MMGKRVN+A RSVI+PDP L + IGVP FAK LTYP PVT +NV+
Sbjct: 433 QALEKKEGLFRKHMMGKRVNYAARSVISPDPMLETNEIGVPPVFAKKLTYPEPVTSYNVS 492
Query: 571 LLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPEG 619
LR+ VINGP +PGA +QNEDG++V + QR+++A +L+TP G
Sbjct: 493 QLRQAVINGPEKWPGATQVQNEDGTMVSLVGMTLEQRKAIANQLLTPSG 541
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 62/87 (71%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP L + IGVP FAK LTYP PVT +NV+ LR+ VINGP +PGA +Q
Sbjct: 453 YAARSVISPDPMLETNEIGVPPVFAKKLTYPEPVTSYNVSQLRQAVINGPEKWPGATQVQ 512
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDG++V + QR+++A +L+TP
Sbjct: 513 NEDGTMVSLVGMTLEQRKAIANQLLTP 539
>gi|367004368|ref|XP_003686917.1| hypothetical protein TPHA_0H02800 [Tetrapisispora phaffii CBS 4417]
gi|357525219|emb|CCE64483.1| hypothetical protein TPHA_0H02800 [Tetrapisispora phaffii CBS 4417]
Length = 1648
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 170/552 (30%), Positives = 271/552 (49%), Gaps = 75/552 (13%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHI 191
+E++ LS ++ +P ++LGH I GGLYDLA+G + C+TCG + C GH GHI
Sbjct: 22 EEIRNLSTKQITNPTVLDNLGHPISGGLYDLALGAFLR--NLCSTCGLDEKFCPGHQGHI 79
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQA------ 245
ELPVP N LFF + + L+ SC CH + + + ++KLL G + ++
Sbjct: 80 ELPVPCYNPLFFNQLYIYLRSSCLFCHHFRLRSVEVHRYTCKLKLLQYGLIEESYQIDNL 139
Query: 246 --KDLEETLFNEENLRLHPA-------QLVQLVDSHVQSI-------------------- 276
L+E++ + E A ++ DS+V+ I
Sbjct: 140 TIGGLDESITDAEEAEEDNALDGEQSSRIKNFADSYVKEIKIKRNEFVEMAIAKALSEGK 199
Query: 277 -LAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCA-----------TPI--NAI 322
GT IND + ++L F ++L+R KC C T I A+
Sbjct: 200 TSVRGTFTAIINDER--KKLVHDFYKKLLARP---KCDNCGMFSPKFRKDGFTKIFETAL 254
Query: 323 SYQQ------RKIIKSFKIDKDNLDQSLDKSLNKSSNQII-----RKREQG--YVMASEV 369
S +Q R ++ I K + L+ N + RK + G Y++++EV
Sbjct: 255 SDKQLTNNRVRGFVRQDMIKKQEQAKKLNGEETTEENFEVGRNPSRKTKTGSTYILSTEV 314
Query: 370 EADFKKLWTNEHLFLKCLIPVL-DTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEH 428
+ ++ E L+ + + T +++ D F+ ++VPP R S E+
Sbjct: 315 RNILRAVFKTEQQVLQYVFHARPNLTGKIVKADDFFMDVVLVPPTRFRLPSKLGDEVHEN 374
Query: 429 SRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVD 488
S+N+L IL + S+++ N E S L + + + ++L N++ +Q +V+
Sbjct: 375 SQNQLLSKILTT-----SLLIRDLNDEISKLQKDKVALDDRRIIFSRLMNAFVTIQNDVN 429
Query: 489 LLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSI 548
+D+ +G + G+KQ L+ K G+ R++MMGKRVN+A RSVI+PDP + D I
Sbjct: 430 SFIDSSKAQGNNSGKLPVPGVKQALEKKEGLFRKHMMGKRVNYAARSVISPDPNIETDEI 489
Query: 549 GVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRE 608
GVP FA LTYP PVT +N+ LR+ VINGP+ +PGA IQNEDGS+V + QR+
Sbjct: 490 GVPPVFATKLTYPEPVTSYNIAELRQAVINGPDKWPGATQIQNEDGSLVSLIGMTVEQRK 549
Query: 609 SLAKRLITPEGN 620
+LA +L+TP N
Sbjct: 550 ALANQLMTPSSN 561
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 61/87 (70%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP + D IGVP FA LTYP PVT +N+ LR+ VINGP+ +PGA IQ
Sbjct: 472 YAARSVISPDPNIETDEIGVPPVFATKLTYPEPVTSYNIAELRQAVINGPDKWPGATQIQ 531
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS+V + QR++LA +L+TP
Sbjct: 532 NEDGSLVSLIGMTVEQRKALANQLMTP 558
>gi|46116898|ref|XP_384467.1| hypothetical protein FG04291.1 [Gibberella zeae PH-1]
Length = 1694
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 172/580 (29%), Positives = 276/580 (47%), Gaps = 109/580 (18%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNY 181
E ++ + + +E++ +SV ++ + TF++L + +PGGLYD A+G + PCTTC N
Sbjct: 12 ESVEFTFLSPKEIRAISVKRIENDSTFDNLLNPVPGGLYDPALGSWGDA--PCTTCNLNQ 69
Query: 182 TKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGY 241
C GH GHI+LPVPV + +F LLK +C C +P ++ ++KLL G
Sbjct: 70 ATCPGHPGHIQLPVPVYHPVFMDQAYRLLKATCVYCKGFRLPQKELHKYMCKLKLLQHGL 129
Query: 242 VTQAKDLEETLFNEENLRLHPAQL-------------------VQLVDSHVQSILAHGTK 282
+ +A + + E +L + + D +V L G K
Sbjct: 130 IQEAHMV--GVIGENDLAIELGNFSELESEAEEEGASSSIDNVTRARDKYVDKCL-RGIK 186
Query: 283 I----CDINDYKGGEELRSAFVAQVLSRHVKRK-CIFCATPINAIS--YQQRKIIKSF-- 333
I ++G E+R + + L+ KR+ C C N IS Y++ + +K F
Sbjct: 187 IKRGDTKRGKHEGSSEMRREVIKEFLAEITKRRLCANC----NGISPSYRKDRFVKVFER 242
Query: 334 --------KIDKDNLDQS---------------------------LDKSLNKS------- 351
K+ + NL QS + +L KS
Sbjct: 243 SLSDKEKAKMAQKNLKQSDAMARVQQGRTKQKPDGYSSDEGVADVVSPTLEKSQLAGDDA 302
Query: 352 --SNQIIRKRE-------QGYVMASEVEADFKKLWTNEHLFLKCLI---PVLDTTKELIA 399
+++ E Q Y+ A EV A +L+T E + L P ++K+ +
Sbjct: 303 EQDTEMMDADEIPASSASQRYISAMEVHARLSELFTKEQELVSLLYNAKPATRSSKK-VT 361
Query: 400 TDIMFIRSLVVPPNNLRPLSMEQMPPV-EHSRNKLYQSILYSCGSLKSVIMAMKNKEQSD 458
++ F+ +++VPPN RP + + E +N LY++IL CG++ + +K +E +D
Sbjct: 362 PEMFFLTTILVPPNRYRPEARTGESEISEAQQNSLYKNILRGCGTIARLHKQLK-EENAD 420
Query: 459 LLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLN-INKTTGAHQIDGLKQMLDGKT 517
+ N+L +W ELQ +V+ L+D N + DG+KQ L+ K
Sbjct: 421 V--------------NQLHQAWTELQDSVNSLIDKDKNPVQGAAAKRNEDGIKQKLEKKE 466
Query: 518 GMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVI 577
G+ R+NMMGKRVN+A RSVI+PDP + + IGVP FAK LTYP PVT N +++ VI
Sbjct: 467 GLFRKNMMGKRVNYAARSVISPDPNIETNEIGVPPVFAKKLTYPEPVTSHNFRDMQQAVI 526
Query: 578 NGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
NG + +PGA I+NE+G +V + + R SLA +L+ P
Sbjct: 527 NGVDKWPGAFAIENENGQIVNLRNKSVDDRVSLANQLLAP 566
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 56/87 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP + + IGVP FAK LTYP PVT N +++ VING + +PGA I+
Sbjct: 480 YAARSVISPDPNIETNEIGVPPVFAKKLTYPEPVTSHNFRDMQQAVINGVDKWPGAFAIE 539
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NE+G +V + + R SLA +L+ P
Sbjct: 540 NENGQIVNLRNKSVDDRVSLANQLLAP 566
>gi|384501317|gb|EIE91808.1| hypothetical protein RO3G_16519 [Rhizopus delemar RA 99-880]
Length = 1668
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 154/541 (28%), Positives = 256/541 (47%), Gaps = 57/541 (10%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNY 181
+ + +Y E++++SV ++ +P+ F++LGH GGLYD ++GP ++ C TC ++
Sbjct: 30 DYVSFSFYEPSEIRKISVKQIVNPVLFDALGHPTKGGLYDPSLGPF-QKTQICATCSQDH 88
Query: 182 TKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGY 241
C GH GHIE+P+P N +FF ++ LL+ C CH+ I + Q+ LL G
Sbjct: 89 FNCPGHFGHIEIPIPAYNPMFFDNLYALLRSKCVYCHQFRISRALMKKYTAQLTLLQHGL 148
Query: 242 VTQAKDLEETLFN------------------EENLRLHPAQLV----------QLVDSHV 273
+ QA+ L+E + + E +L L A+ L D
Sbjct: 149 INQAQSLDEIVLDFKKASEAKEDETLEDRMEESSLSLSTAEEYIDYVDNFMKDALADEEA 208
Query: 274 QSILAHGTKICDINDYKGGEELRSAFVAQVLSRHV--KRKCIFCATPINAISYQQRK--I 329
+ A K+ IND + V + +H +KC C + IS R+
Sbjct: 209 RKYAAQDYKVTVINDVRKN-------VMRDFMKHCIHSKKCGNC----HGISPPVRRDGA 257
Query: 330 IKSFKIDKDNLDQSLDKSLNKSSNQIIRKRE----QGYVMASEVEADFKKLWTNEH---- 381
K F++ + DQ++ + +S+ + Q ++ EV D + L+ E
Sbjct: 258 AKLFQLALNKKDQAVMDRMKESTGSFGEIKGFINGQRFLTPYEVRKDVQALFEKEGEITT 317
Query: 382 LFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSC 441
L P + + + + FI L V P RP S+ E +N+L +IL
Sbjct: 318 LLFGARDPRVPSFIKKATYHMFFIEVLAVAPTRFRPPSVMGDKTFESPQNELLSAILKGS 377
Query: 442 GSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTT 501
++ + Q+ E + + + N+ +S LQ+ V+ +D+ N +
Sbjct: 378 ----HLVRDFSEELQAASEEEPVDKKKVEVTRNRFVDSIINLQHAVNSFIDSTKNPTQVA 433
Query: 502 GAHQID-GLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTY 560
+ G++Q L+ K G+ R++MMGKRVN+A RSVI+PDP++ IG+P FA LTY
Sbjct: 434 QGQNLPPGIRQALEKKEGLFRKHMMGKRVNYAARSVISPDPFIETSEIGIPPVFATKLTY 493
Query: 561 PVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPEGN 620
P PVTP N+ +R+ VINGPN +PGA +QNED S+ + R +LA L+ P+ +
Sbjct: 494 PEPVTPHNIKEMRQAVINGPNKWPGATHVQNEDQSIDVLGDLSIESRIALANSLLAPQSS 553
Query: 621 Y 621
+
Sbjct: 554 H 554
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 56/88 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP++ IG+P FA LTYP PVTP N+ +R+ VINGPN +PGA +Q
Sbjct: 464 YAARSVISPDPFIETSEIGIPPVFATKLTYPEPVTPHNIKEMRQAVINGPNKWPGATHVQ 523
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPE 101
NED S+ + R +LA L+ P+
Sbjct: 524 NEDQSIDVLGDLSIESRIALANSLLAPQ 551
>gi|403215737|emb|CCK70236.1| hypothetical protein KNAG_0D04970 [Kazachstania naganishii CBS
8797]
Length = 1671
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 162/557 (29%), Positives = 271/557 (48%), Gaps = 75/557 (13%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
++ +EV+ LSV ++ +P ++LGH I GGLYDLA+G + C +CG + C GH+
Sbjct: 19 FSAKEVRALSVKQITNPTVLDNLGHPISGGLYDLALGAFLR--NMCASCGLDEKFCPGHL 76
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELPVP N LFF + + L+ SC C++ + A F +++LL G + +A L
Sbjct: 77 GHIELPVPCYNPLFFNQLYIYLRSSCLFCYRFRLKALEVHAFAMKLRLLQHGLIDEAYKL 136
Query: 249 EETLFNEENLRLHPAQLVQLVDSHVQ---SILAHGTKICD--INDYKGG-EELRSAFVAQ 302
+E + + + P + + + S K+ + DY + LR FV
Sbjct: 137 DELKVDGVSAAMAPGNNDEEAEEDNELDGSATGQSKKVSADVMADYAQKLKVLRVEFVDL 196
Query: 303 VLSRHVKR-KCIFCATPINAISYQQRKIIKSF------------------KIDKDNLDQS 343
+++ + K T +S +++K++ F K KD +
Sbjct: 197 AIAKAISEGKTTHKGTFTATVSAERKKLVHDFHKRLLARPKCDNCGMFSPKFRKDGFTKI 256
Query: 344 LDKSLNK---SSNQI--------IRKREQG------------------------------ 362
+ +L + ++N++ I+K++Q
Sbjct: 257 FETALPEKQLTNNRVKGFIREDMIKKKKQAKELANGGSAESDEPEFNIGRNPATKPKTGS 316
Query: 363 -YVMASEVEADFKKLWTNEHLFLKCLIPVL-DTTKELIATDIMFIRSLVVPPNNLRPLSM 420
Y++++EV ++ +E L+ + + K ++ +I F +VVPP R S
Sbjct: 317 TYILSTEVRNILTSVFKSEQEVLQYVFHARPNLAKRYVSANIFFTDVIVVPPTRFRLPSK 376
Query: 421 EQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSW 480
E+S+N+L IL + ++ + N E S L + + + ++L N +
Sbjct: 377 MGEEIHENSQNQLLSKILTTALLIRDL-----NDEMSKLQKDKVSVDDRRIIFSRLMNGF 431
Query: 481 HELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPD 540
+Q +V+ +D+ T G + G+KQ L+ K G+ R++MMGKRVN+A RSVI+PD
Sbjct: 432 VTIQNDVNAFIDSTKAQGSTGGNVPVPGVKQALEKKEGLFRKHMMGKRVNYAARSVISPD 491
Query: 541 PYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRIS 600
P + + IGVP FA LTYP PVT +N+ LR+ VINGP+ +PGA IQNEDGS+V +
Sbjct: 492 PNIETNEIGVPPVFATKLTYPEPVTSYNIAELRQAVINGPDKWPGALQIQNEDGSLVSLI 551
Query: 601 SSQAVQRESLAKRLITP 617
QR++LA +L+TP
Sbjct: 552 GMTLEQRKALANQLMTP 568
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 61/87 (70%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP + + IGVP FA LTYP PVT +N+ LR+ VINGP+ +PGA IQ
Sbjct: 482 YAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTSYNIAELRQAVINGPDKWPGALQIQ 541
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS+V + QR++LA +L+TP
Sbjct: 542 NEDGSLVSLIGMTLEQRKALANQLMTP 568
>gi|242774376|ref|XP_002478429.1| DNA-directed RNA polymerase I subunit (Rpa190), putative
[Talaromyces stipitatus ATCC 10500]
gi|218722048|gb|EED21466.1| DNA-directed RNA polymerase I subunit (Rpa190), putative
[Talaromyces stipitatus ATCC 10500]
Length = 1689
Score = 232 bits (591), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 162/556 (29%), Positives = 259/556 (46%), Gaps = 82/556 (14%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +++K++SV ++F+ + +SL + IP LYD A+G + CTTC + C GH
Sbjct: 20 YSSEDIKKISVKRIFNTPSLDSLHNPIPNSLYDPALGAWGDH--VCTTCRASSWSCPGHP 77
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELPVP+ N FF + LL+ C CH++ I + +++LL G V Q ++
Sbjct: 78 GHIELPVPIWNVTFFDQMYRLLRAKCDFCHRLRIARVEINAYACKLRLLQYGLVDQTAEI 137
Query: 249 EE--------TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGG-------- 292
++ + +EN + P ++L + V+ + K D + GG
Sbjct: 138 DKIGEYGQDAAVDADENGNVDPQTKMELRNKFVRKCIREAQKQGDSGAFFGGAKNPVAAE 197
Query: 293 --EELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSL------ 344
EL F ++ + + C + + Y KI + KD + ++
Sbjct: 198 QRRELIKEFFKELAKGKICKSCHYVSPGYRKDRYA--KIFRKAMSTKDKVAMTMAGMTAP 255
Query: 345 ---------DKSLNKSSNQ--------------------IIRKRE--------------Q 361
K LNK Q ++R Q
Sbjct: 256 NPVIVLEEEKKLLNKPKEQDKQNGTAIREVTELHGAEEEVVRANAAISQGSIAGGQEGGQ 315
Query: 362 GYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSME 421
+V + EV A L+ E L + K I+ D++F+R+++VPPN RP + +
Sbjct: 316 QFVSSPEVYAAICLLFEKEKEILNLVYSSRLGFK--ISPDMLFVRNILVPPNRFRPPAQQ 373
Query: 422 QMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWH 481
+E +N + IL +C + + + + E +G R + LQ +
Sbjct: 374 GGQIMEAQQNTPFTQILKTCDLINMISHSRQTAE--------TEGTRMREYRDLLQ-AIV 424
Query: 482 ELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDP 541
LQ V+ L+D+ A Q +G+KQ+L+ K G+ R+NMMGKRVN+A RSVI+PDP
Sbjct: 425 TLQEQVNTLIDSDRGPGGMAAARQANGVKQLLEKKEGLFRKNMMGKRVNYAARSVISPDP 484
Query: 542 YLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISS 601
L +GVP+ FAK LT+P PVT +N LR+ VINGP+ YPGA+ I+NE G VV +
Sbjct: 485 SLETHEVGVPMVFAKKLTFPEPVTSFNFHELREAVINGPDKYPGASAIENESGQVVNLKF 544
Query: 602 SQAVQRESLAKRLITP 617
+R +LA +L+ P
Sbjct: 545 KTLDERTALANQLLAP 560
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 63/100 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP L +GVP+ FAK LT+P PVT +N LR+ VINGP+ YPGA+ I+
Sbjct: 474 YAARSVISPDPSLETHEVGVPMVFAKKLTFPEPVTSFNFHELREAVINGPDKYPGASAIE 533
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI 113
NE G VV + +R +LA +L+ P + + +K+
Sbjct: 534 NESGQVVNLKFKTLDERTALANQLLAPSHAKMKGNRNKKV 573
>gi|212531955|ref|XP_002146134.1| DNA-directed RNA polymerase I subunit (Rpa190), putative
[Talaromyces marneffei ATCC 18224]
gi|210071498|gb|EEA25587.1| DNA-directed RNA polymerase I subunit (Rpa190), putative
[Talaromyces marneffei ATCC 18224]
Length = 1689
Score = 232 bits (591), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 165/556 (29%), Positives = 259/556 (46%), Gaps = 80/556 (14%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +++K++SV ++F+ + +SL + IP LYD A+G + CTTC + C GH
Sbjct: 20 YSSEDIKKISVKRIFNTPSLDSLHNPIPHSLYDPALGAWGDH--VCTTCRASSWSCPGHP 77
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELPVPV N FF V LL+ C CH++ +P F +++LL G V Q +
Sbjct: 78 GHIELPVPVWNVTFFDQVYRLLRAKCDYCHRLRMPRIEINAFACKLRLLQYGLVDQTAKI 137
Query: 249 E--------ETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGE------E 294
+ + +E + P ++L + V+ + K D + GG E
Sbjct: 138 DMIGEDAQDAAVDADEKGNVDPQTKMELRNKFVKKCIREAQKQGDGDALFGGAKNPVSAE 197
Query: 295 LRSAFVAQVLSRHVK---RKCIFC-----------------------------------A 316
R + + K + C C
Sbjct: 198 QRRELIKEFFKEAAKNPQKPCANCHYTSPGYRKDRYAKIFRKAMTTKALVANQMAGMSAP 257
Query: 317 TPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKR---EQG---------- 362
P+ + ++R + K+ + DK N D L+ + +++R +QG
Sbjct: 258 NPVIVLQEEKRLLNKTKEQDKQNGTAIGDVAELHGAEEEVVRANAAIDQGSLAGGQVGGQ 317
Query: 363 -YVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSME 421
+V A EV A L+ E L + K I D+MF+R+++VPPN RP + +
Sbjct: 318 QFVSAPEVHAAICLLFEKEREILNLVYSSRLGFK--INPDMMFVRNILVPPNRFRPPAQQ 375
Query: 422 QMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWH 481
+E +N + IL +C + ++ + + E G R + LQ +
Sbjct: 376 GGQIMEAQQNTPFTQILKTCDLINTISHSRQTAETD--------GARMREYRDLLQ-AIV 426
Query: 482 ELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDP 541
LQ V+ L+D+ A +G+KQ+L+ K G+ R+NMMGKRVN+A RSVI+PDP
Sbjct: 427 TLQEQVNSLIDSDRGPGGMAAARAANGIKQILEKKEGLFRKNMMGKRVNYAARSVISPDP 486
Query: 542 YLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISS 601
L +GVP+ FAK LT+P PVT +N LR+ VINGP+ YPGA+ I+NE G VV +
Sbjct: 487 SLETHEVGVPMVFAKKLTFPEPVTSFNFHELREAVINGPDKYPGASAIENESGQVVNLKF 546
Query: 602 SQAVQRESLAKRLITP 617
+R +LA +L+ P
Sbjct: 547 KNLEERTALANQLLAP 562
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 63/100 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP L +GVP+ FAK LT+P PVT +N LR+ VINGP+ YPGA+ I+
Sbjct: 476 YAARSVISPDPSLETHEVGVPMVFAKKLTFPEPVTSFNFHELREAVINGPDKYPGASAIE 535
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI 113
NE G VV + +R +LA +L+ P + + +K+
Sbjct: 536 NESGQVVNLKFKNLEERTALANQLLAPSHAKMKGNRNKKV 575
>gi|340514005|gb|EGR44276.1| predicted protein [Trichoderma reesei QM6a]
Length = 1666
Score = 231 bits (589), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 161/547 (29%), Positives = 267/547 (48%), Gaps = 75/547 (13%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNY 181
E ++ + + +E++ +SV ++ + TF++L + +PGGLYD A+G + PC TC N
Sbjct: 12 ESVEFTFLSAKEIQAISVKRIENESTFDNLLNPVPGGLYDPALGSWGDA--PCATCNLNQ 69
Query: 182 TKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGY 241
C GH GHI+LPVPV + +F LL+ +C C +P + Q++LL G
Sbjct: 70 NNCPGHPGHIQLPVPVYHPVFLDQAYRLLRATCVYCKGFRLPPKDLHKYTCQLRLLHHGL 129
Query: 242 VTQAKDLEETLFNEENLRLHPAQLVQLVDS------------------HVQSILAHGTKI 283
+ +A + E +L + + + DS +V+ L G K+
Sbjct: 130 IHEAHMV--ATIGENDLAVEIREAIGEGDSEAEEDNSGSDGVTRQREKYVRQCL-QGIKM 186
Query: 284 ----CDINDYKGGEELRSAFVAQVLSRHVK-RKCIFCA--TPINAISYQQRKIIKSFKID 336
++G E+R + + L+ +K R+C C +P +Y++ + +K F+
Sbjct: 187 KRGEAKKGKHEGATEMRREIIKEFLADIIKKRECSSCGGISP----TYRKDRFVKIFEKA 242
Query: 337 KDNLDQS-LDKSLNKSSNQIIRKREQG---------------------YVMASEVEADFK 374
+ +++ + + K + + R E G Y+ + EV A +
Sbjct: 243 LSSKEKAKMAQKALKFGDAMTRDVEMGDADHYDDDDDDDDIPEEGAQRYISSMEVRARLE 302
Query: 375 KLWTNEHLFLKCLIPVLDTTK--ELIATDIMFIRSLVVPPNNLRPLSMEQMPPV-EHSRN 431
+L+ E L + T+ + + D+ FI ++VPPN RP + + E +N
Sbjct: 303 ELFRKEQDLLSLVYNAKPPTQSSQKVTPDMFFITVVLVPPNRFRPEARTGDSQISEAQQN 362
Query: 432 KLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLM 491
LY++IL C + V ++ K SD+ S + +W ELQ V+ L+
Sbjct: 363 ALYKNILGCCSRIARVYKGLEEK-TSDMAS--------------MHQAWTELQDAVNSLI 407
Query: 492 DAKLN-INKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGV 550
D N + A DG+KQ+L+ K G+ R+NMMGKRVN+A RSVI+PDP + + IGV
Sbjct: 408 DKNKNPVQGAAAARTEDGIKQLLEKKEGLFRKNMMGKRVNYAARSVISPDPNIETNEIGV 467
Query: 551 PLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESL 610
P FAK LTYP PVT N +++ VING + +PGA I+NE+G +V + + R SL
Sbjct: 468 PPVFAKKLTYPEPVTSHNFKDMQQAVINGVDKWPGAFAIENENGQIVNLRNKSVDDRISL 527
Query: 611 AKRLITP 617
A +L+ P
Sbjct: 528 ANQLLAP 534
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 60/100 (60%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP + + IGVP FAK LTYP PVT N +++ VING + +PGA I+
Sbjct: 448 YAARSVISPDPNIETNEIGVPPVFAKKLTYPEPVTSHNFKDMQQAVINGVDKWPGAFAIE 507
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI 113
NE+G +V + + R SLA +L+ P + +K+
Sbjct: 508 NENGQIVNLRNKSVDDRISLANQLLAPTNSNSARTRNKKV 547
>gi|50555960|ref|XP_505388.1| YALI0F13783p [Yarrowia lipolytica]
gi|49651258|emb|CAG78195.1| YALI0F13783p [Yarrowia lipolytica CLIB122]
Length = 1628
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 163/536 (30%), Positives = 264/536 (49%), Gaps = 46/536 (8%)
Query: 119 VVPEILKLKY--YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTT 176
V EI ++ + Y+ +E+ QLSV ++ +P TF++LG+ I GGLYD +G + C T
Sbjct: 9 VGAEITRVDFGLYSPEEILQLSVTQITNPTTFDALGNPISGGLYDPKLGAFLR--NNCAT 66
Query: 177 CGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKL 236
C + C+GH GHIELP+PV N LFF + +LL+ +C C +++L
Sbjct: 67 CNLDNRFCQGHPGHIELPMPVYNPLFFTQLWVLLRAACRFCGHFRTSKAEVHKIYCKLRL 126
Query: 237 LDAGYVTQAKDLE--ETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEE 294
L G V A +++ ++ E + + VD+ V + T+ K G
Sbjct: 127 LQYGLVGAAAEIDNIKSFMKESDDDVVQDDASASVDAAVMDRQSKFTEKTIAEALKEGVT 186
Query: 295 L-RSAFVAQVLSRH------------VKRKCIFCATPINAISYQQRKIIKSFKIDKDNLD 341
+ A VL K +C C +++ +Y++ I K F++
Sbjct: 187 TPQGVQTATVLEERKFVIRDFYKLLVAKSQCAQCG--MHSPAYRKDGISKIFEMPLSENK 244
Query: 342 QSLDKSLNKSSNQIIRKREQ--------------GYVMASEVEADFKKLWTNEHLFLKCL 387
+ +++S + +IR R Y+++SEV L+ +E + L
Sbjct: 245 EKVNQSKGLRARNMIRDRSDPINEYPLPKAGANGRYLLSSEVRNILVTLFEHEQQLMSVL 304
Query: 388 I---PVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSL 444
P D+ + I+ D+ F++++VVP R + VE + N L +L + +
Sbjct: 305 FRNRPNFDS--QSISGDMFFLKNIVVPATRFRLPAARGEEVVESTTNTLLVKVLSTGMKI 362
Query: 445 KSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAH 504
+ + N + + E + L N++ ELQ +V+ +D+ N+ TG+
Sbjct: 363 RDL-----NGTIAKMRLEKIGLPERKVTFAALMNAFVELQNDVNGFIDSTKG-NQKTGSV 416
Query: 505 QIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPV 564
+ G+KQ L+ K G+ R+NMMGKRVN+A RSVI+PDP + + IGVP FA LTYP PV
Sbjct: 417 PVPGIKQTLEKKEGLFRKNMMGKRVNYAARSVISPDPNIETNEIGVPPVFAVKLTYPEPV 476
Query: 565 TPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPEGN 620
TP+NV L + VINGP+V+PGA IQ EDG ++ + QR + A +L+TP N
Sbjct: 477 TPYNVAELSRAVINGPDVWPGAIQIQTEDGKMISLEGMTLEQRTATANQLLTPSAN 532
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 58/87 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP + + IGVP FA LTYP PVTP+NV L + VINGP+V+PGA IQ
Sbjct: 443 YAARSVISPDPNIETNEIGVPPVFAVKLTYPEPVTPYNVAELSRAVINGPDVWPGAIQIQ 502
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
EDG ++ + QR + A +L+TP
Sbjct: 503 TEDGKMISLEGMTLEQRTATANQLLTP 529
>gi|401623429|gb|EJS41527.1| rpa190p [Saccharomyces arboricola H-6]
Length = 1667
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 165/564 (29%), Positives = 268/564 (47%), Gaps = 87/564 (15%)
Query: 130 TDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
T +E++ LS ++ +P ++LGH + GGLYDLA+G + C+TCG + C GH G
Sbjct: 20 TAKEIRNLSAKQITNPTVLDNLGHPVSGGLYDLALGAFLR--NLCSTCGLDEKFCPGHQG 77
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLE 249
HIELPVP N LFF + + L+ SC CH + + + +++LL G + ++ ++
Sbjct: 78 HIELPVPCYNPLFFNQLYIYLRSSCLFCHHFRLKSVEVHRYACKLRLLQYGLIDESYKVD 137
Query: 250 ETLFNEENLRLHPAQLVQLVDSHVQSILAHGTK--------ICDINDYKGGEELRSAFVA 301
E N ++ + D+ +S+ +K + D K E A
Sbjct: 138 EINLRSLNSSMYAGDEA-IEDNEDESMDGEDSKQSRDISSSLLDELKTKRSEYADMAIAK 196
Query: 302 QVLSRHVKRKCIFCATPINAISYQQRKIIKSF------------------KIDKDNLDQS 343
+ K F AT ++ +++K++ F K KD +
Sbjct: 197 ALSDGRTTEKGSFTAT----VNDERKKLVHEFHKKLLARAKCDNCGMFSPKFRKDGFTKI 252
Query: 344 LDKSLNKSSNQIIRKREQGYV---------MASEVEADFKKLWTNEHLFLKCLIP----- 389
+ +LN QI R +G++ A ++E + L +E F P
Sbjct: 253 FETALN--DKQITNNRVKGFIRQDMIKKQKQAEKLEGSNEDLGDDEESFDVGRNPTTRPK 310
Query: 390 -------------VLDT-------------------TKELIATDIMFIRSLVVPPNNLRP 417
+LDT +++L+ D F+ +VVPP R
Sbjct: 311 TGSTYILSTEVKNILDTVFRKEQTVLQYVFHSRPNLSRKLVKADSFFMDVIVVPPTRFRL 370
Query: 418 LSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQ 477
S E+S+N+L +L + S+++ N + S L + + ++L
Sbjct: 371 PSKLGDEVHENSQNQLLSKVLTT-----SLLIRDLNDDLSKLQKGKVSLEDRRVIFSRLM 425
Query: 478 NSWHELQYNVDLLMDA-KLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSV 536
N++ +Q +V+ +D+ K ++T+G I G+KQ L+ K G+ R++MMGKRVN+A RSV
Sbjct: 426 NAFVTIQNDVNAFIDSTKAQGSRTSGKVPIPGVKQALEKKEGLFRKHMMGKRVNYAARSV 485
Query: 537 ITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSV 596
I+PDP + + IGVP FA LTYP PVT +N+ LR+ VINGP+ +PGA IQNEDGS+
Sbjct: 486 ISPDPNIETNEIGVPPVFAVKLTYPEPVTAYNIAELRQAVINGPDKWPGATQIQNEDGSL 545
Query: 597 VRISSSQAVQRESLAKRLITPEGN 620
V + QR++LA +L+TP N
Sbjct: 546 VSLIGMSLEQRKALANQLLTPSSN 569
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 65/100 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP + + IGVP FA LTYP PVT +N+ LR+ VINGP+ +PGA IQ
Sbjct: 480 YAARSVISPDPNIETNEIGVPPVFAVKLTYPEPVTAYNIAELRQAVINGPDKWPGATQIQ 539
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI 113
NEDGS+V + QR++LA +L+TP + +K+
Sbjct: 540 NEDGSLVSLIGMSLEQRKALANQLLTPSSNVSTHTLNKKV 579
>gi|50286997|ref|XP_445928.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525234|emb|CAG58847.1| unnamed protein product [Candida glabrata]
Length = 1643
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 165/548 (30%), Positives = 267/548 (48%), Gaps = 71/548 (12%)
Query: 130 TDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
T +++ LS ++ +P ++LGH I GGLYDLA+G + C TCG + C GH G
Sbjct: 20 TSADIRNLSAKRITNPTVLDNLGHPISGGLYDLALGAFLR--NLCGTCGLDEKFCPGHQG 77
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLE 249
HIELPVP N LFF + + L+ +C CH + + + +++LL G + ++ ++
Sbjct: 78 HIELPVPCYNPLFFNQLYIYLRSACLFCHHFKLKSLDVHRYACKLRLLQYGLIDESYQVD 137
Query: 250 ETLFNE--------------ENLRLHPAQLV--------QLVDSHVQSILAHG------T 281
+ EN A L + VD + ++ G T
Sbjct: 138 SIQLDNVLDSMEAVEDDGEGENKNDMSATLSKELKQKRKEFVDISIAKAISEGRTSERGT 197
Query: 282 KICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCA----------------TPINAISYQ 325
+ND + ++L F ++L R KC C T +N
Sbjct: 198 FTATVNDER--KKLLHEFHKRLLMRP---KCDNCGMYSPKFRKDGFTKIFETALNEKQLT 252
Query: 326 QRKIIKSFKID----KDNLDQSLDKSLNKSSNQIIR------KREQGYVMASEVEADFKK 375
++ + D K+ D+ K ++ S I R K YV+++E+ +
Sbjct: 253 NNRVRGFVRRDMLKKKEQSDKLAGKETSEDSFDIGRNPSTRPKTGSTYVLSTEIRNILRS 312
Query: 376 LWTNEHLFLKCLI---PVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNK 432
++ E L+ + P L +++L+ D+ F+ LVVPP R S E+S+N+
Sbjct: 313 VFQKEQQVLQYVFHSKPNL--SRKLVKADMFFMDVLVVPPTRFRLPSKLGDEVHENSQNQ 370
Query: 433 LYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMD 492
L IL + S+++ N E S L + + + ++L N++ +Q +V+ +D
Sbjct: 371 LLSKILTT-----SLLIRDLNDELSTLQKDKVSLEDRRIIFSRLMNAFVTIQNDVNSFID 425
Query: 493 AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPL 552
+ T G I G+KQ L+ K G+ R++MMGKRVN+A RSVI+PDP + + IGVP
Sbjct: 426 STKAQGNTGGKVPIPGVKQALEKKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPP 485
Query: 553 EFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAK 612
FA LTYP PVT +N+ LR+ +INGP+ +PGA+ IQNEDGS++ + QR++LA
Sbjct: 486 VFATKLTYPEPVTSYNIAELRQAIINGPDKWPGASQIQNEDGSLISLVGMTLEQRKALAN 545
Query: 613 RLITPEGN 620
+L+TP N
Sbjct: 546 QLMTPSSN 553
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 67/100 (67%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP + + IGVP FA LTYP PVT +N+ LR+ +INGP+ +PGA+ IQ
Sbjct: 464 YAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTSYNIAELRQAIINGPDKWPGASQIQ 523
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI 113
NEDGS++ + QR++LA +L+TP + + +K+
Sbjct: 524 NEDGSLISLVGMTLEQRKALANQLMTPSSNPYTHTLNKKV 563
>gi|320594279|gb|EFX06682.1| DNA-directed RNA polymerase 1 subunit [Grosmannia clavigera kw1407]
Length = 2662
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 170/586 (29%), Positives = 277/586 (47%), Gaps = 99/586 (16%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDP-CTTCGNN 180
E ++ + + E++ SV ++ + TF++L + +PGGLYD A+G GD CTTC
Sbjct: 933 ESVEFVFLSASEIRAASVRRIENESTFDTLLNPVPGGLYDPALGAW---GDAICTTCNLG 989
Query: 181 YTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAG 240
+ C GH GHI+LPVPV + +F LL+ C CH +P ++ +++LL G
Sbjct: 990 QSLCPGHAGHIDLPVPVYHPVFLDQTLRLLRAECMYCHHFRLPHKELNQYVCKLRLLQYG 1049
Query: 241 YVTQAKDLEETLFNEENLRLHPAQLVQ---------LVDS-------HVQSILA-HGTKI 283
+ +A +++ + ++L L ++ L DS +V+ +L H
Sbjct: 1050 LLAEATNIDAIGEDYDSLALPDVPQIEIEADDDSMTLSDSVSRARSTYVRQVLQNHKISA 1109
Query: 284 CDI--NDYKGGEELRSAFVAQVLSRHV-KRKCIFC----------------ATPINAISY 324
DI ++G E+R VAQ + V R+C C P+++
Sbjct: 1110 GDIRKGKHEGASEMRRDLVAQFMKDIVTSRQCSRCKGISPSYRRDRFVKVFEKPLSSKEQ 1169
Query: 325 QQRKIIKSFKI---------------------------------DKDNLDQSLDKSLNKS 351
+ + FK+ D + +++ +D+ L++S
Sbjct: 1170 AKMAVSGHFKVRDALTIRRKPGHNESDAASDEGIADIDLDSASSDSETVEKDVDE-LDES 1228
Query: 352 SNQIIRKREQG----------YVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKEL-IAT 400
+ R+ G Y+ A EV + L+ NE L+ + K +
Sbjct: 1229 GKLVQREAANGSLAPDAAKQRYISAQEVLERLRLLFHNEQEVLQLIYSSRPQAKGTQTSP 1288
Query: 401 DIMFIRSLVVPPNNLRPLSMEQMPPV-EHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDL 459
D+ FI +L+VPPN RP + V E +N LY+ +L + + + ++
Sbjct: 1289 DMFFIEALLVPPNKYRPEARTGDSEVTESQQNSLYKGVLGASFKVADI--------HREI 1340
Query: 460 LSEALKGIRGDTLNNK----LQNSWHELQYNVDLLMDAKLNINKTTGAHQID-GLKQMLD 514
L+ R L + L +W ELQ V+ L+D+ N + A +I+ G+KQ L+
Sbjct: 1341 LTAGTDRRRQTGLAARDIIALHEAWTELQSTVNSLIDSSKNPVQGQNAKRIEEGIKQKLE 1400
Query: 515 GKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRK 574
K G+ R+NMMGKRVNFA RSVI+PDP + + IGVP FA+ LTYP PVT N +L++
Sbjct: 1401 KKEGLFRKNMMGKRVNFAARSVISPDPNIETNEIGVPPVFARKLTYPEPVTSHNFKVLQQ 1460
Query: 575 MVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPEGN 620
VING + +PGA+ I+NE+G VV + S +R +LA +L+ P N
Sbjct: 1461 AVINGTDKWPGASAIENENGQVVNLRSKSLEERMALANQLLAPTSN 1506
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 65/104 (62%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IGVP FA+ LTYP PVT N +L++ VING + +PGA+ I+
Sbjct: 1417 FAARSVISPDPNIETNEIGVPPVFARKLTYPEPVTSHNFKVLQQAVINGTDKWPGASAIE 1476
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKIITRQ 117
NE+G VV + S +R +LA +L+ P + M+ K + R
Sbjct: 1477 NENGQVVNLRSKSLEERMALANQLLAPTSNSSSSGMRGKKVYRH 1520
>gi|322705032|gb|EFY96621.1| DNA-directed RNA polymerase I subunit RPA1 [Metarhizium anisopliae
ARSEF 23]
Length = 1659
Score = 229 bits (583), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 161/556 (28%), Positives = 262/556 (47%), Gaps = 78/556 (14%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNY 181
+ + + + +E++ +SV ++ + TF+SL + + GGLYD A+G + +PC TC
Sbjct: 12 DAVDFTFLSPEEIQAISVKRIENDSTFDSLLNPVHGGLYDPALGSWGD--EPCATCSLIS 69
Query: 182 TKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGY 241
+ C GH GHI+LP PV + +F LL+ +C C +P ++ +++LL G
Sbjct: 70 SSCPGHPGHIQLPAPVYHPVFMDQAYHLLRATCVYCRGFRLPPKDLHKYMCKLRLLQHGL 129
Query: 242 VTQAK-----------------DLEETLFNEENLRLHPAQLVQLVDSHVQSIL-AHGTKI 283
+ +A L E+ +EEN + + + +VQ L + +
Sbjct: 130 IREAHVIDALGETDSSEMDEALGLGESEADEENSSFD--NVTRKREQYVQVCLRSSALRR 187
Query: 284 CDI--NDYKGGEELRSAFVAQVLSR-HVKRKCIFC---ATPINAISY-----------QQ 326
D ++G + R + Q L+ + KR+C C + P Y +Q
Sbjct: 188 GDTRKGKHEGMAQARREVIKQFLAEINKKRQCSSCDGISPPYRKDRYVKIFEKALSPKEQ 247
Query: 327 RKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKRE---------------------QGYVM 365
K++K KD + + D L+ ++ I + + Q Y+
Sbjct: 248 VKMMKKNLSRKDAMTRHYDAKLDPKADVEISEPDAIVESLSDQDEEEPDIDGASTQRYIS 307
Query: 366 ASEVEADFKKLWTNEHLFLKCLIPVLDTTKEL--IATDIMFIRSLVVPPNNLRPLS-MEQ 422
E+ A +L+ E + L T+ + D+ FI +++VPPN RP + M
Sbjct: 308 PMEIRARLSELFKKEQDLVFLLYNSKPRTRRSPDVTPDMFFITTILVPPNRYRPEARMGD 367
Query: 423 MPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHE 482
E +N LY+SIL C + V +KN+E D+ +L +W E
Sbjct: 368 SQVTEAEQNSLYKSILRGCSKIARVYSVLKNEEHVDI--------------TQLHQAWTE 413
Query: 483 LQYNVDLLMDAKLN-INKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDP 541
LQ V+ L+D N + DG+KQ L+ K G+ R+NMMGKRVN+A RSVI+PDP
Sbjct: 414 LQEGVNALIDKSKNPVQGAAAKRNEDGIKQKLEKKEGLFRKNMMGKRVNYAARSVISPDP 473
Query: 542 YLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISS 601
+ + IGVP FA+ LT+P PVT N +++ VING N +PGA I+NE+G V + +
Sbjct: 474 NIETNEIGVPPVFAQKLTFPEPVTSHNFRDMQQAVINGANTWPGAVAIENENGQVQMLKN 533
Query: 602 SQAVQRESLAKRLITP 617
+R SLA +L+ P
Sbjct: 534 KSVDERISLANQLLAP 549
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 56/87 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP + + IGVP FA+ LT+P PVT N +++ VING N +PGA I+
Sbjct: 463 YAARSVISPDPNIETNEIGVPPVFAQKLTFPEPVTSHNFRDMQQAVINGANTWPGAVAIE 522
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NE+G V + + +R SLA +L+ P
Sbjct: 523 NENGQVQMLKNKSVDERISLANQLLAP 549
>gi|336271863|ref|XP_003350689.1| hypothetical protein SMAC_02360 [Sordaria macrospora k-hell]
gi|380094851|emb|CCC07353.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1701
Score = 228 bits (582), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 179/592 (30%), Positives = 282/592 (47%), Gaps = 108/592 (18%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDP-CTTCGNNYT 182
++ ++ T+ E++ +SV K+ + TF++L + +PGGLYD A+G GD CTTC +
Sbjct: 14 VEFQFLTENEIRAISVRKIENESTFDTLLNPVPGGLYDPALGSW---GDSLCTTCNLGQS 70
Query: 183 KCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYV 242
+C GH GHIELPVPV + +F LL+ C CH+ +P + ++LL G +
Sbjct: 71 QCPGHPGHIELPVPVYHPVFMDQAYRLLRAQCVYCHRFRLPRREIHRYSCMLRLLQCGLL 130
Query: 243 TQAKDLEETLFNEENLRLHPAQL----------------------VQLVDSHVQSIL-AH 279
+A+ ++ +E + QL ++ +++V+++L H
Sbjct: 131 KEAQMIDSFGESEFGSTIRQFQLADVPDMEDDEAEEEGNNLNDSTIRQREAYVRNVLREH 190
Query: 280 GTKIC--DIND--YKGGEELRSAFVAQVLSRHVK-RKCIFCA--TPI------------- 319
TK+ DIN ++G ++R A V + L+ +K +KC C +P+
Sbjct: 191 RTKVTMRDINKGKHEGAADMRRALVKEFLAAIIKDKKCRTCDGISPVYRKDRYTKIFERD 250
Query: 320 ------NAISYQQRKI----------------------IKSFKIDKDN-------LDQSL 344
A++ RK I+S + DN LD++
Sbjct: 251 LTQKEKAAMAQAGRKRADALAMKGGKKKDHDDDEGVADIESTASESDNSEGEGEELDENG 310
Query: 345 DKSLNKSSNQIIRKRE-------QGYVMASEVEADFKKLWTNEHLFLKCLI---PVLDTT 394
D + + ++ K + Q Y+ + EV+ L+ E + L P
Sbjct: 311 DVVMTDAGSKSKTKEKAEKRALPQRYISSLEVKERLNFLFQKEQEIMALLFSSKPRPKHA 370
Query: 395 KELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNK 454
K + A D+ FI++L+VPPN RP + E +N LY+ IL S ++A ++
Sbjct: 371 KPMTA-DMFFIQTLLVPPNKFRPEARMGDQVTEAQQNSLYKLILRG-----SSMVAQISR 424
Query: 455 EQSDLLSEALKG-----IRGDTLNNKLQNSWHELQYNVDLLMDAKLN-INKTTGAHQIDG 508
E +SE KG R N L +W +LQ V+ L+D N + G DG
Sbjct: 425 E----VSETAKGNAPEDGRRARDINALYQAWTQLQDAVNSLIDRDKNPVQGAAGKRNEDG 480
Query: 509 LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWN 568
+KQ L+ K G+ R+NMMGKRVNFA RSVI+PDP + IGVP FA+ LTYP PVT N
Sbjct: 481 IKQKLEKKEGLFRKNMMGKRVNFAARSVISPDPNIETSEIGVPPVFARKLTYPEPVTSHN 540
Query: 569 VTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPEGN 620
LR VING +PGA+ I+ E+G +V + + +R +LA +L+ P N
Sbjct: 541 YNDLRNAVINGMERWPGASAIEMENGQIVNLRNKSEDERHALANQLLAPTNN 592
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 59/100 (59%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + IGVP FA+ LTYP PVT N LR VING +PGA+ I+
Sbjct: 503 FAARSVISPDPNIETSEIGVPPVFARKLTYPEPVTSHNYNDLRNAVINGMERWPGASAIE 562
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI 113
E+G +V + + +R +LA +L+ P + + +K+
Sbjct: 563 MENGQIVNLRNKSEDERHALANQLLAPTNNNFSGVRNKKV 602
>gi|324499651|gb|ADY39856.1| DNA-directed RNA polymerase I subunit RPA1 [Ascaris suum]
Length = 1339
Score = 228 bits (580), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 169/562 (30%), Positives = 265/562 (47%), Gaps = 78/562 (13%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
L+L+ Y E+ +LSVV++ TF+ +GH + GGLYD +GPI E D C TC T
Sbjct: 22 LQLRSYFPHEIDELSVVQITQTKTFDEIGHPVRGGLYDPRLGPI-ELFDQCETCYQQGTY 80
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIP--ATSQLLFINQIKLLDAG- 240
C GH+G+I+L VPV N L F L+K +C CH+ + + + Q++ LD G
Sbjct: 81 CPGHMGYIQLDVPVFNPLLFSFTYSLMKGTCVHCHRFTCQTNGVAAKILLAQLRALDLGM 140
Query: 241 ---------YVTQA----------------------------------------KDLEET 251
Y+++ KD+ +
Sbjct: 141 LSTAHQLESYISEKFSHTGNSIGDTPQLSNEMTAITELDAIFAELSGKSTSSLQKDMVKP 200
Query: 252 LFNEENLR---LHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHV 308
+ N L+ +H L + L HG ND GG + F +R
Sbjct: 201 MKNAVELKRSLMHAFCRDHLFKHMKRCKLCHGGNGVLRND--GGRCILIDFSGVATTRAA 258
Query: 309 KRKCIFCATPINAISYQQRKI----IKSFKIDKDNLDQSLDKSLNKSSNQIIRKR----- 359
K F A +N + Q+ ++ + + DK L+ + LN ++ + K+
Sbjct: 259 KMSAKFNA--VNDLMEQEVEVDPNDVDEKEGDKKLLNDNSLGMLNDTAELTLHKQLAAVE 316
Query: 360 ----EQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTT-KELIATDIMFIRSLVVPPNN 414
E+ A EV F+ +W N+ FLK L P+ D E D++F ++VPP
Sbjct: 317 NGTCEKLAWRAVEVREHFRMVWKNDAAFLKKLFPLFDCDDSEHCPMDVLFCEKVLVPPTK 376
Query: 415 LRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKG-IRGDTLN 473
RP+ + E+ + + +L + ++++V MA+ + + L E + + G T+
Sbjct: 377 FRPIRYFKGDKFENPQTVNLRKLLEATETMRAVRMAVSGGKNNAALMELISTRVPGKTMR 436
Query: 474 NKLQNSWHELQYNVDLLMDAKLNINKTTGAHQ-IDGLKQMLDGKTGMIRQNMMGKRVNFA 532
K+ NS+ LQ + + D ++++T+ I G+KQ+L+ K G+ R NMMGKRVNFA
Sbjct: 437 EKMHNSYLVLQQRIGAIFDQ--DLDRTSDQRSLIPGIKQILEKKQGLFRMNMMGKRVNFA 494
Query: 533 GRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
RSVITPDPYL+ID IG+P FAK LT+P P + N+ LRK+V NGP +PGAN +
Sbjct: 495 CRSVITPDPYLDIDEIGIPEIFAKKLTFPEPASLINLPKLRKLVKNGPAKHPGANFVLRP 554
Query: 593 DGSVVRISSSQAVQRESLAKRL 614
G + + +R + AKRL
Sbjct: 555 GGFKQVLLDEKREERFAEAKRL 576
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 53/84 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVITPDPYL+ID IG+P FAK LT+P P + N+ LRK+V NGP +PGAN +
Sbjct: 493 FACRSVITPDPYLDIDEIGIPEIFAKKLTFPEPASLINLPKLRKLVKNGPAKHPGANFVL 552
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
G + + +R + AKRL
Sbjct: 553 RPGGFKQVLLDEKREERFAEAKRL 576
>gi|242088681|ref|XP_002440173.1| hypothetical protein SORBIDRAFT_09g027223 [Sorghum bicolor]
gi|241945458|gb|EES18603.1| hypothetical protein SORBIDRAFT_09g027223 [Sorghum bicolor]
Length = 799
Score = 228 bits (580), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 168/565 (29%), Positives = 278/565 (49%), Gaps = 90/565 (15%)
Query: 106 RAIMKEKIITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMG 165
R I ++ +EV + L +Y+D E+K++S+ K+ ++ +PGGL D AMG
Sbjct: 1 REIWEDIQAASEEV--DSLHFSFYSDDEIKRISIKKITKLERLDAKNLPVPGGLLDPAMG 58
Query: 166 PISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPAT 225
PI++ D C +CG N +C GH GHIEL P+ N L F ++ LL ++CF CHK +
Sbjct: 59 PINDT-DTCKSCGQNSVRCPGHFGHIELAKPLFNPLLFMSLRNLLHVTCFYCHKFRLNKE 117
Query: 226 SQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICD 285
++N+++LL G + AK+LE+++ E L + + G K
Sbjct: 118 QVDRYVNELELLVKGDIVGAKNLEDSV-KEAYLSEEDENITETTS---------GDKSSS 167
Query: 286 INDYKGGEELRSAFVAQVLSRHVKR---KCIFC-------ATPI-------NAISYQQRK 328
+ D K ++ V + S+ +K+ KC C ++PI + S +
Sbjct: 168 VKDNKTWTSVQLKEVLSIFSKIMKKRQTKCAKCDMKSPTISSPIFGWLVKDTSASAVRAN 227
Query: 329 IIKSFKIDKDN------------LDQSLDK-------SLNK-------SSNQIIRKREQG 362
I FK+ D LD+ S+N+ + +++ +
Sbjct: 228 AIADFKLKGDGDAHNSGDTGVSGLDEETTSPGMVSKGSINEVRRLSDDAVKEMVASSGKK 287
Query: 363 YVMASEVEADFKKLWTNEHLFLKCLIP----VLDTTKELIATDIMFIRSLVVPPNNLRPL 418
+++ +EVE+ K LW NE F L L ++ ++ F+ SL+V PN RP
Sbjct: 288 HLLPTEVESILKDLWNNEARFCMLLCDFQKNTLSEPEKRRGYEMFFLNSLLVAPNRFRPS 347
Query: 419 SMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQN 478
+ + +EH QS+L S ++ +A+++ S S + IR
Sbjct: 348 TNSSLGMMEHP-----QSVLLS--KVQEANLALQHHNAS---SNHMDVIR---------- 387
Query: 479 SWHELQYNVDLLMDAKLNINKTT-GAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVI 537
W +LQ +V++L D+ + K+ AH G++Q+L+ K G++RQ MMGKRVN+A RSVI
Sbjct: 388 RWMDLQRSVNVLYDSSKGLVKSEKNAH---GIRQLLEKKEGILRQKMMGKRVNYACRSVI 444
Query: 538 TPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
+PDPYL ++ IG+P FA LTYP VTPWN L++ + NG +++PGA ++++ +
Sbjct: 445 SPDPYLAVNEIGIPPVFATRLTYPEKVTPWNTKKLQEAIRNGADIHPGATHYRDKNNTY- 503
Query: 598 RISSSQAV--QRESLAKRLITPEGN 620
QAV +R S+AK L G+
Sbjct: 504 ---KLQAVPAKRHSVAKMLPASRGS 525
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 54/83 (65%), Gaps = 6/83 (7%)
Query: 17 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 76
RSVI+PDPYL ++ IG+P FA LTYP VTPWN L++ + NG +++PGA ++++
Sbjct: 441 RSVISPDPYLAVNEIGIPPVFATRLTYPEKVTPWNTKKLQEAIRNGADIHPGATHYRDKN 500
Query: 77 GSVVRISSSQAV--QRESLAKRL 97
+ QAV +R S+AK L
Sbjct: 501 NTY----KLQAVPAKRHSVAKML 519
>gi|358399047|gb|EHK48390.1| hypothetical protein TRIATDRAFT_236383 [Trichoderma atroviride IMI
206040]
Length = 1679
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 163/574 (28%), Positives = 270/574 (47%), Gaps = 103/574 (17%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNY 181
E ++ + + +E++ +SV ++ + TF++L + +PGGLYD A+G + PC+TC N
Sbjct: 12 ESVEFTFLSAKEIQAISVKRIENESTFDNLLNPVPGGLYDPALGSWGDA--PCSTCNLNQ 69
Query: 182 TKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGY 241
+ C GH GHI+LPVPV + +F LL+ +C C +P + Q++LL G
Sbjct: 70 SNCPGHPGHIQLPVPVYHPVFMDQAYRLLRATCVYCKGFRLPPKDLHKYTCQLRLLHHGL 129
Query: 242 VTQAKDLEETLFNEENLRLHPA--------------------QLVQLVDSHVQSI-LAHG 280
+ +A + NE + + A Q + V +Q I L G
Sbjct: 130 IREAHMVATIGENELAVEIQEALGEGPSEAEEEESSIDSVTRQREKFVRKCLQGIKLKRG 189
Query: 281 TKICDINDYKGGEELRSAFVAQVLSRHVKRK-CIFCA--TPINAISYQQRKIIKSFKI-- 335
++G E+R + L+ +K++ C C +P +Y++ + +K F+
Sbjct: 190 E--AKRGKHEGAYEMRREVIKDFLTEIIKKRVCSSCGGISP----TYRKDRFVKVFEKAL 243
Query: 336 ---DKDNLDQS---LDKSLNKSSNQIIRKREQG--------------------------- 362
+K + Q ++ + N+ K+ +G
Sbjct: 244 SAKEKAKMAQKALKFGDAMTRVHNRPASKKSKGGENGVVRINGSEVSPPGSQDIEMADAD 303
Query: 363 -------------YVMASEVEADFKKLWTNEHLFLKCLI----PVLDTTKELIATDIMFI 405
Y+ + EV+A ++L+ E L + P ++K + D+ FI
Sbjct: 304 DDDDAGAGEDSQRYISSMEVKARLEELFHKEQDLLSLVYNAKPPTQSSSK--VTPDMFFI 361
Query: 406 RSLVVPPNNLRPLSMEQMPPV-EHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEAL 464
+ ++VPPN RP + + E +N LY++IL C + V A++ K
Sbjct: 362 KVILVPPNRFRPEARTGDSQISEAQQNGLYKNILACCSRIAHVYKALEEK---------- 411
Query: 465 KGIRGDTLNNKLQNSWHELQYNVDLLMDAKLN-INKTTGAHQIDGLKQMLDGKTGMIRQN 523
R D N + +W ELQ V+ L+D N + A +G+KQ+L+ K G+ R+N
Sbjct: 412 ---RSDITN--MHQAWTELQDAVNSLIDKNKNPVQGAAAARNEEGIKQLLEKKEGLFRKN 466
Query: 524 MMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVY 583
MMGKRVN+A RSVI+PDP + + IGVP FAK LTYP PVT N +++ VING + +
Sbjct: 467 MMGKRVNYAARSVISPDPNIETNEIGVPPVFAKKLTYPEPVTSHNFKDMQQAVINGVDKW 526
Query: 584 PGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
PGA I+NE+G +V + + R SLA +L+ P
Sbjct: 527 PGAFAIENENGQIVNLRNKSVDDRISLANQLLAP 560
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 63/104 (60%), Gaps = 1/104 (0%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP + + IGVP FAK LTYP PVT N +++ VING + +PGA I+
Sbjct: 474 YAARSVISPDPNIETNEIGVPPVFAKKLTYPEPVTSHNFKDMQQAVINGVDKWPGAFAIE 533
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKIITRQ 117
NE+G +V + + R SLA +L+ P + A MK K + R
Sbjct: 534 NENGQIVNLRNKSVDDRISLANQLLAPTNSSA-ARMKNKKVHRH 576
>gi|224002505|ref|XP_002290924.1| DNA directed RNA polymerase i, alpha subunit [Thalassiosira
pseudonana CCMP1335]
gi|220972700|gb|EED91031.1| DNA directed RNA polymerase i, alpha subunit [Thalassiosira
pseudonana CCMP1335]
Length = 1671
Score = 226 bits (575), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 168/578 (29%), Positives = 272/578 (47%), Gaps = 85/578 (14%)
Query: 107 AIMKEKIITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGP 166
A + + II Q P ++ YTD EV+Q SV ++ S + +++L +P GLYD +GP
Sbjct: 2 ANLNQAIIRHQ---PTSVQFGVYTDDEVRQRSVCEISSSVAYDALNTPLPRGLYDPLLGP 58
Query: 167 ISERGDP----CTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINI 222
+ G C TCGN C GH GHIEL VPV + LFF + L +K+ C CH +
Sbjct: 59 TAGGGGGASAYCITCGNVQNLCPGHFGHIELCVPVYHPLFFPKLLLFMKMKCLACHHFRL 118
Query: 223 PATSQLLFINQIKLLDAGYVTQAKDLEE---TLFNEENLRLHPAQLVQLVDSHVQSILAH 279
+ +F ++ L+D G + +A L+E L ++ ++ ++ + V + S A
Sbjct: 119 SKRACRVFCTKLHLVDVGRMGEAMGLDEEMAALASKASVGGGDGKMSKQVKQEMMSSAA- 177
Query: 280 GTKICDINDYK---------GGEELRSAFVAQVLSRHVKR-------KCIFCATPINAIS 323
I ++ D K EE+ + + R + + KC+ CA NA S
Sbjct: 178 -VLIDELLDQKMALRPPDGQSAEEVTHTMHERAVRRKILKEFQQACTKCLKCAN-CNAFS 235
Query: 324 YQQR--KIIKSFKI----------DKDNLD----------------QSLDKSLNKSSNQI 355
+ R + K F++ D D ++D+ ++ + I
Sbjct: 236 NKIRHDQFNKMFQVALPARNAKVSDVSREDFPANTKGKKKKKSTSSSTVDEEIDPTGGPI 295
Query: 356 IRK------------REQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIM 403
RK ++ ++ A EVEA + W NE +
Sbjct: 296 SRKATVSTTKNIEASKQDNFMHALEVEAQCRLTWNNEPFLCSKFFGWGK------GYTLF 349
Query: 404 FIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMK--NKEQSDLLS 461
F+R++ VPP+ RP + VEHS+N +L ++S + +E++DL +
Sbjct: 350 FLRAVPVPPSRFRPPVIMGNMTVEHSQNFYLSKVLELNARIRSAFATIHELTQEEADLKN 409
Query: 462 EALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIR 521
D + W +LQ V+ MD+ + K T + +G++Q+L+ K G+ R
Sbjct: 410 T-------DKGQANMLEIWVDLQTTVNCFMDSTRD-PKGTANNAPNGIRQLLEKKEGIFR 461
Query: 522 QNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPN 581
++MMGKRVNFA RSVI+PDPY+ + IG+PL FAKTLT+P PVT N+ +RK+V GP
Sbjct: 462 KHMMGKRVNFACRSVISPDPYIGTNEIGLPLYFAKTLTFPTPVTALNIAEMRKLVQRGPL 521
Query: 582 VYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPEG 619
YPGA ++ +G + +S + R ++A RL+ G
Sbjct: 522 QYPGAVWVEFPNGQRIDLSKMKEGNRHAIAARLLADNG 559
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 56/86 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDPY+ + IG+PL FAKTLT+P PVT N+ +RK+V GP YPGA ++
Sbjct: 471 FACRSVISPDPYIGTNEIGLPLYFAKTLTFPTPVTALNIAEMRKLVQRGPLQYPGAVWVE 530
Query: 74 NEDGSVVRISSSQAVQRESLAKRLIT 99
+G + +S + R ++A RL+
Sbjct: 531 FPNGQRIDLSKMKEGNRHAIAARLLA 556
>gi|254581290|ref|XP_002496630.1| ZYRO0D04532p [Zygosaccharomyces rouxii]
gi|238939522|emb|CAR27697.1| ZYRO0D04532p [Zygosaccharomyces rouxii]
Length = 1667
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 165/562 (29%), Positives = 270/562 (48%), Gaps = 82/562 (14%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
++ +E++ LS ++ +P ++LGH I GGLYDLA+G + C TCG + C GH
Sbjct: 19 FSAEEIRNLSAKQITNPTVLDNLGHPISGGLYDLALGAFLR--NLCATCGLDEKFCPGHQ 76
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLF-----------------I 231
GHIELPVP N LFF + + L+ SC CH+ + + F +
Sbjct: 77 GHIELPVPCYNPLFFSQLYIYLRSSCLYCHRFRLRSIEVNRFACKLRLLQYGLVEESYQL 136
Query: 232 NQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQ--LVQLVDSHVQSILAHGTKICDINDY 289
+Q+++ D + +D + + N PA+ L + ++ +L + D+
Sbjct: 137 DQLRVGDLQGGSDDEDDNDEAVEDNNTSETPAKKSLKDASSAMLKELLQKRKEFVDVAIA 196
Query: 290 KGGEELRSA-------------------FVAQVLSRHVKRKCIFCA-----------TPI 319
K E +++ F ++LSR KC C T I
Sbjct: 197 KAISEGKASHKGVFTIITNEERKKVIHDFHRRLLSR---AKCDNCGMFSPKFRKDGFTKI 253
Query: 320 --NAISYQQ---------------RKIIKSFKIDKDNLDQSLDKSLNKSSNQIIR-KREQ 361
A++ +Q +K +S K+D + +D+ + N R K
Sbjct: 254 FETALTDKQLTNNRVKGVIRQDMIKKQQQSAKLDGEEKANDVDEVFSLGKNPSARPKTGS 313
Query: 362 GYVMASEVEADFKKLWTNEHLFLKCLI---PVLDTTKELIATDIMFIRSLVVPPNNLRPL 418
Y++++EV + L+ E L+ + P L ++ + D+ F+ ++VPP R
Sbjct: 314 TYILSTEVRNIMRVLFKKEQEILQYVFHSRPNL--LRKSVTPDVFFMEVVLVPPTRFRLP 371
Query: 419 SMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQN 478
S E+++N+L +L + S+++ N E S+L + + + ++L N
Sbjct: 372 SKLGEEVHENTQNQLLSKVLTT-----SLLIRDLNDEMSNLQKDKVSVEDRRVIFSRLMN 426
Query: 479 SWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
++ +Q +V+ +D+ T G I G+KQ L+ K G+ R++MMGKRVN A RSVI+
Sbjct: 427 AFVTIQNDVNSFIDSTKAQGSTGGKVPIPGVKQALEKKEGLFRKHMMGKRVNHAARSVIS 486
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVR 598
PDP + + IGVP FA LTYP PVT +N+ LR+ VINGP+ +PGA IQNEDGS+V
Sbjct: 487 PDPNIETNEIGVPPVFATKLTYPEPVTSYNIAELRQAVINGPDKWPGATQIQNEDGSLVS 546
Query: 599 ISSSQAVQRESLAKRLITPEGN 620
+ QR +LA +L+TP N
Sbjct: 547 LVGMTLEQRNALANQLLTPSSN 568
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 66/106 (62%), Gaps = 4/106 (3%)
Query: 9 NHAHVFPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPG 68
NHA RSVI+PDP + + IGVP FA LTYP PVT +N+ LR+ VINGP+ +PG
Sbjct: 478 NHAA----RSVISPDPNIETNEIGVPPVFATKLTYPEPVTSYNIAELRQAVINGPDKWPG 533
Query: 69 ANMIQNEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKII 114
A IQNEDGS+V + QR +LA +L+TP + +K+
Sbjct: 534 ATQIQNEDGSLVSLVGMTLEQRNALANQLLTPSSNPATHTLNKKVF 579
>gi|384247373|gb|EIE20860.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Coccomyxa subellipsoidea C-169]
Length = 1671
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 158/550 (28%), Positives = 263/550 (47%), Gaps = 80/550 (14%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
+ +Y+D+E++ LSV ++ SPI F++L + +PGGLYD AMGP+ ++G C TC Y
Sbjct: 17 ISFGFYSDEEIRALSVKQIVSPIVFDNLRNAVPGGLYDPAMGPLEQQGQ-CATCNQGYMS 75
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVT 243
C GH GHIEL VPV N L F + LL+ +C C K+ + T + +++LL G +
Sbjct: 76 CPGHFGHIELAVPVYNPLVFTTMYKLLRCTCLHCFKLKMLQTEVEQYKRKLELLAEGKLV 135
Query: 244 QAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGE---------- 293
+A + + + +++ G K+ + D + E
Sbjct: 136 EAMHV----------------VTGGSSATAKAVEKIGAKLAGLGDVEAAERRSSHAAAST 179
Query: 294 ---------------ELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFK--ID 336
E V + R ++C C +A ++ K F+ +D
Sbjct: 180 SAASAHREKMTSLSLEAIRETVGEFFRRMPVQQCANCGA--HAPVLKRDGCAKVFQKPLD 237
Query: 337 KDNLDQSLDKSL-----------NKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLK 385
++++ K + N++ NQ+ R + ++ +EV +++WT L
Sbjct: 238 FKKVEKNRSKGIEVTSALKTSRKNENLNQLHVHRPR-FMTVAEVREVMRRMWTRNADALS 296
Query: 386 CLIPVLDTTKELI----------------ATDIMFIRSLVVPPNNLRPLSMEQMPPVEHS 429
L+ D+ + A ++ F++ + V PN +RP S EH
Sbjct: 297 -LMYAQDSRLRIFGFSAGAGGAQPGAFEDAYNMFFLQVVPVAPNRVRPPSFIGDAAFEHP 355
Query: 430 RNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDL 489
N I+ + +L+ V A + ++ + E +R L + L+ +W LQ +V+
Sbjct: 356 HNIALTRIINA--NLELVSQAAEPVGATEKIPENRVVLRQKGLADSLR-TWLALQGHVNS 412
Query: 490 LMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIG 549
L+D+ G + G++Q L+ K G+ R+NMMGKRVNFA RSVI+PDPYL IG
Sbjct: 413 LLDSTTAGPGAKG--DVQGIRQQLEKKEGLFRKNMMGKRVNFAARSVISPDPYLAAGEIG 470
Query: 550 VPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRES 609
VP FA L++P VTPWNV LR+MVI G + +PGA +++E G V+ + +RE+
Sbjct: 471 VPPYFAVRLSFPERVTPWNVAELREMVIRGAHEHPGAVAVEDELGRVILLHKLPLNRREA 530
Query: 610 LAKRLITPEG 619
+AK L++ G
Sbjct: 531 VAKLLLSKAG 540
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 60/100 (60%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDPYL IGVP FA L++P VTPWNV LR+MVI G + +PGA ++
Sbjct: 452 FAARSVISPDPYLAAGEIGVPPYFAVRLSFPERVTPWNVAELREMVIRGAHEHPGAVAVE 511
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI 113
+E G V+ + +RE++AK L++ + KI
Sbjct: 512 DELGRVILLHKLPLNRREAVAKLLLSKAGMEEAGARGRKI 551
>gi|171690214|ref|XP_001910032.1| hypothetical protein [Podospora anserina S mat+]
gi|170945055|emb|CAP71166.1| unnamed protein product [Podospora anserina S mat+]
Length = 1706
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 171/590 (28%), Positives = 263/590 (44%), Gaps = 105/590 (17%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
+ ++ T E++ +SV ++ +P+TF++L + +PGGLYD A+G + PC TCG N +
Sbjct: 14 VDFQFLTSDEIRAVSVKRIENPVTFDTLLNPVPGGLYDPALGSWGDA--PCRTCGLNQAQ 71
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVT 243
C GH GHIEL VP + +F L+ C CH F +KLL G +
Sbjct: 72 CPGHPGHIELAVPCYHPVFMDQAFRFLRSMCIYCHHFRTARREIHRFACMLKLLQYGLLH 131
Query: 244 QAK---DLEETLFNEENL--------------------------RLHPAQLVQLVDSHVQ 274
+A+ + E+ E L R A + Q++ H
Sbjct: 132 EAQLIDAISESELGGEKLKSMRLPDIPNMDDEAEDEGSTTDVTMRAREAYVRQVLKEHRT 191
Query: 275 SILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRK-CIFC------------------ 315
+ A K ++G E+R A + ++ + VK K C C
Sbjct: 192 RLSAGDIKRAK---HEGAAEMRRALLKELFATLVKEKRCKSCDGISPTLRKDRYVKIFER 248
Query: 316 -------ATPINAISYQQRKIIKSFKIDKD------------------------NLDQSL 344
AT A + + + K KD +LD+
Sbjct: 249 GLSSKDKATMAQAGRKSRDALTMTNKNKKDADGEDEGVADMESEPEPEDEGEGDSLDEGG 308
Query: 345 DKSLNKSSNQIIRKRE------QGYVMASEVEADFKKLWTNEHLFLKCLI----PVLDTT 394
D ++ + + K + Q ++ + EV+ L+ E + + P +
Sbjct: 309 DVAMKDAETETQTKSKTKASAPQRFLNSMEVKGRLDLLFQAEREIMSLIFNTRPPTKASR 368
Query: 395 KELIATDIMFIRSLVVPPNNLRPLS-MEQMPPVEHSRNKLYQSILYSCGSLKSVI--MAM 451
+ I DI FI +L+VPPN +RP + M + E +N LY+ I+ ++ + +A+
Sbjct: 369 SKPITADIFFIHTLMVPPNRMRPEARMGENQITEAEQNSLYKKIIEKSSAVGQISREIAL 428
Query: 452 KNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLN-INKTTGAHQIDGLK 510
K + +G R LN+ L +W ELQ V+ LMD N I G +G+K
Sbjct: 429 GKK------AVVQEGRRPRDLNH-LYQAWTELQEAVNSLMDRDKNPIQGNAGKRNEEGIK 481
Query: 511 QMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVT 570
Q L+ K G+ R+NMMGKRVNFA RSVI+PDP + IGVP FA LTYP PVT +N
Sbjct: 482 QKLEKKEGLFRKNMMGKRVNFAARSVISPDPNIETSEIGVPPVFAVKLTYPEPVTHFNFK 541
Query: 571 LLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPEGN 620
L++ VING +PGA I+NE+G VV + + +R +LA L+ P N
Sbjct: 542 DLQQAVINGVEKWPGAAAIENENGQVVNLRNKSLEERVALANTLLAPSTN 591
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 59/101 (58%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + IGVP FA LTYP PVT +N L++ VING +PGA I+
Sbjct: 502 FAARSVISPDPNIETSEIGVPPVFAVKLTYPEPVTHFNFKDLQQAVINGVEKWPGAAAIE 561
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKII 114
NE+G VV + + +R +LA L+ P + +K++
Sbjct: 562 NENGQVVNLRNKSLEERVALANTLLAPSTNSFANLRGKKVL 602
>gi|344247571|gb|EGW03675.1| DNA-directed RNA polymerase I subunit RPA1 [Cricetulus griseus]
Length = 638
Score = 223 bits (567), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 163/506 (32%), Positives = 255/506 (50%), Gaps = 79/506 (15%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P +SLG+ GLYDLA+GP + + C+TC +++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYVDSLGNPSANGLYDLALGPADSK-EVCSTCVQDFSNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELP+ V N L F + LLL+ SC CH + P + L + Q+++L+ G + +L
Sbjct: 79 GHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAAIHLLVCQLRVLEVGALQAVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSIL---------AHGTKICDINDYKGGEELRS 297
E L F EE ++ + ++ + IL AH +C E RS
Sbjct: 139 ERILSRFLEETANPSAFEIQEELEEYTSKILQNNLLGSQGAHVKNVC---------ESRS 189
Query: 298 AFVAQVLSRHV-KRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQII 356
+A H+ ++C C T R +I+ K L + + +K S Q
Sbjct: 190 RLIAYFWKTHMTAKRCPHCKT--------GRSVIR--KEHNSKLTITYPVTAHKKSGQ-- 237
Query: 357 RKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDT--TKELIATDIMFIRSLVVPPNN 414
K FL L LD + + F+ +VVPP+
Sbjct: 238 ------------------KDAEPSGFFLNYLFSGLDDIGMESSFNPSMFFLDFIVVPPSR 279
Query: 415 LRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNN 474
RP+ N+L +++ G ++ MK+ +L L +
Sbjct: 280 YRPV------------NRLGDQ-MFTNGQTVNLQAVMKDA----VLIRKLLALMAQ--EQ 320
Query: 475 KLQNSWHEL---QYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNF 531
KL EL + +V+++ D++++ + G++Q+L+ K G+ R++MMGKRV++
Sbjct: 321 KLPCEVTELTTDKSHVNIVFDSEMD---KLMMEKYPGIRQILEKKEGLFRKHMMGKRVDY 377
Query: 532 AGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQN 591
A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+ N
Sbjct: 378 AARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVIN 437
Query: 592 EDGSVVRISSSQAVQRESLAKRLITP 617
EDGS +S+ A QRE++AK+L+TP
Sbjct: 438 EDGSRTALSAVDATQREAVAKQLLTP 463
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 67/87 (77%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 377 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 436
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +S+ A QRE++AK+L+TP
Sbjct: 437 NEDGSRTALSAVDATQREAVAKQLLTP 463
>gi|402078175|gb|EJT73524.1| DNA-directed RNA polymerase I subunit RPA1 [Gaeumannomyces graminis
var. tritici R3-111a-1]
Length = 1726
Score = 222 bits (566), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 177/583 (30%), Positives = 272/583 (46%), Gaps = 97/583 (16%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
++ + + +E++ SV ++ + TF++L + +PGGLYD A+G E CTTC +
Sbjct: 14 VEFTFLSAEEIRAFSVKRIENDNTFDTLLNPVPGGLYDPALGAWGE--SLCTTCNLGPSS 71
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVT 243
C GH GHIELPVPV + +F LL+ C CHK + T F+ +LL G +
Sbjct: 72 CPGHPGHIELPVPVYHPVFMDQTLRLLRAQCAYCHKFRLRRTEIHRFVCLFRLLQYGLLA 131
Query: 244 QAKDLE---ETL--FNEENLRLHPA--------------QLVQLVDSHVQSILA-HGTKI 283
+A+ L+ ET+ + N H +V+ DS+V+ +L H I
Sbjct: 132 EARILDAMGETIPGLSTANRLRHEDESESEAEDESNLEDAVVRKRDSYVRKVLKRHRISI 191
Query: 284 CDI--NDYKGGEELRSAFVAQVLSRHVK-RKCIFC----------------ATPINAISY 324
+I ++G E+R V L K R C C P++ S
Sbjct: 192 GEIRKGKHEGASEMRRELVKDFLRDIAKGRICASCQGISPTYRKDGFVKIFEKPLS--SK 249
Query: 325 QQRKIIK-SFKID-----------KDNLDQS------------------------LDKSL 348
+Q K+ + SFK+ KD QS LDKS
Sbjct: 250 EQAKMAQGSFKLRDAMVIRQKPKRKDEGYQSDEAIADVDMQSSDSAGEESGEGDDLDKSG 309
Query: 349 -------NKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLI--PVLDTTKELIA 399
+K N Y+ + EV L+ EH L + + +A
Sbjct: 310 KVVKVPNSKQPNNAGSSTTHRYLTSREVMERLNLLFKKEHEVLSLFYNSKPSSKSSKKLA 369
Query: 400 TDIMFIRSLVVPPNNLRPLSMEQMPPV-EHSRNKLYQSILYSCGSLKSVIMAMKNKEQSD 458
D+ FI++++VPP+ RP + V E +N LY+ +L S + +++ +
Sbjct: 370 ADLFFIQTVLVPPSRYRPEARTGDAQVAEAQQNNLYKMVLRSANKVTQTFRDLQDP--NS 427
Query: 459 LLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQID-GLKQMLDGKT 517
+LS G N L +W E+Q +V+ L+D+ N + A + G+KQ L+ K
Sbjct: 428 MLSRRHGGD-----NTVLYEAWTEVQNSVNSLIDSTKNPAQGAAAKGAEEGIKQKLEKKE 482
Query: 518 GMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVI 577
G+ R+NMMGKRVN+A RSVI+PDP + + IGVP FA+ LTYP PVT N +++ VI
Sbjct: 483 GLFRKNMMGKRVNYAARSVISPDPNIETNEIGVPPVFARKLTYPEPVTSHNFKDMQQAVI 542
Query: 578 NGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPEGN 620
NGP+ +PGA I+NE+G VV + + +R SLA +L+ P N
Sbjct: 543 NGPDKWPGATAIENENGQVVNLRNKSPEERASLANQLLAPTSN 585
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 62/100 (62%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP + + IGVP FA+ LTYP PVT N +++ VINGP+ +PGA I+
Sbjct: 496 YAARSVISPDPNIETNEIGVPPVFARKLTYPEPVTSHNFKDMQQAVINGPDKWPGATAIE 555
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI 113
NE+G VV + + +R SLA +L+ P + +K+
Sbjct: 556 NENGQVVNLRNKSPEERASLANQLLAPTSNNSGGMRNKKV 595
>gi|346323105|gb|EGX92703.1| DNA-directed RNA polymerase I subunit RPA1 [Cordyceps militaris
CM01]
Length = 1929
Score = 221 bits (564), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 173/573 (30%), Positives = 270/573 (47%), Gaps = 98/573 (17%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNY 181
E ++ + + E++ +SV ++ + TF+S+ + +PGGLYD A+G + PCTTC N+
Sbjct: 12 ESVEFTFLSPAEIEAVSVKRIENESTFDSMLNPVPGGLYDPALGSWGD--SPCTTCNLNH 69
Query: 182 TKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGY 241
C GH GHI+LPVPV + +F LL+ +C C + A ++ +++LL G
Sbjct: 70 LYCPGHPGHIKLPVPVYHPIFLDQAYHLLRATCLYCKGFRLSAKDLHKYMCKLRLLQHGL 129
Query: 242 VTQA--------KDLEETLFNEENLRLHPAQ----------LVQLVDSHVQSILAHGTKI 283
V +A D L +L L ++ + + + +VQ L G K
Sbjct: 130 VHEAHIVGAIGETDFSGALEASVSLELDGSEAEDDTSSIDNVTRKREKYVQLCLQRGRKT 189
Query: 284 C-DI--NDYKGGEELRSAFVAQVLSRHVKRK-CIFCATPINAIS--YQQRKIIKSFK--- 334
DI ++G ++R + + L+ KR+ C+ C N IS Y++ +K F+
Sbjct: 190 RRDIKKGKHEGTGQMRREVIKEFLAELTKRRECVSC----NGISPTYRKDSFVKIFEKAL 245
Query: 335 IDKD-------NL-------------------------DQSLDKSLNKSSNQIIRKRE-- 360
DKD NL D S D+S + + E
Sbjct: 246 SDKDTAKMAQRNLKFGDAMSRVYQKTMTKKDQQNETTHDSSEDESQSGEDVTMQDADEEE 305
Query: 361 ------------QGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATD--IMFIR 406
Q Y+ EV A +L+ E + L TK T + F+
Sbjct: 306 STIPKANRPAVNQRYISPMEVRARLVELFDKEQDLVSLLYNATPATKRTAKTTPHMFFVT 365
Query: 407 SLVVPPNNLRPLSMEQMPPV-EHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALK 465
L+VPPN RP + + E S+N LY++IL S G + + +KN SD+ +
Sbjct: 366 VLLVPPNRFRPEARTGDSQISEASQNNLYKNILRSNGKIAKLHDNVKNG-SSDITA---- 420
Query: 466 GIRGDTLNNKLQNSWHELQYNVDLLMDAKLN-INKTTGAHQIDGLKQMLDGKTGMIRQNM 524
L +W ELQ +V+ L+D N + DG+KQ L+ K G+ R+NM
Sbjct: 421 ----------LHLAWVELQESVNALVDKNKNPVQGAAAKRNEDGIKQKLEKKEGLFRKNM 470
Query: 525 MGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYP 584
MGKRVN+A RSVI+PDP ++ + IGVP FA+ LTYP PVT N +++ VING + +P
Sbjct: 471 MGKRVNYAARSVISPDPNIDTNEIGVPPVFAQKLTYPEPVTSHNFRDMQQAVINGVSKWP 530
Query: 585 GANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
GA I++E+G +V + + R SLA +L+ P
Sbjct: 531 GAIAIEDENGQIVNLRNKSVDDRISLANQLLAP 563
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 57/87 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP ++ + IGVP FA+ LTYP PVT N +++ VING + +PGA I+
Sbjct: 477 YAARSVISPDPNIDTNEIGVPPVFAQKLTYPEPVTSHNFRDMQQAVINGVSKWPGAIAIE 536
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
+E+G +V + + R SLA +L+ P
Sbjct: 537 DENGQIVNLRNKSVDDRISLANQLLAP 563
>gi|400597994|gb|EJP65714.1| RNA polymerase Rpb1 [Beauveria bassiana ARSEF 2860]
Length = 1945
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 173/577 (29%), Positives = 280/577 (48%), Gaps = 102/577 (17%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNY 181
E ++ + + E++ +SV ++ + TF+S+ + +PGGLYD A+G + PCTTC N+
Sbjct: 12 ESVEFTFLSPAEIEAVSVKRIENESTFDSMLNPVPGGLYDPALGSWGD--SPCTTCNLNH 69
Query: 182 TKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGY 241
C GH GHI+LPVPV +T+F V LL+ +C C +PA ++ +++LL G
Sbjct: 70 LYCPGHPGHIKLPVPVYHTIFVDQVYHLLRSACLYCKGFRLPAKDLHKYMCKLRLLQHGL 129
Query: 242 VTQAK--------DLEETLFNEENLRLHPAQ----------LVQLVDSHVQSILAHGTKI 283
V +A D+ + L +L L ++ + + + +VQ L G K
Sbjct: 130 VHEAHIVGAIGEIDISDDLEASVSLELDGSEAEDDTSSIDNVTRKREKYVQLCLRGGRKT 189
Query: 284 C-DI--NDYKGGEELRSAFVAQVLSRHVK-RKCIFCATPINAIS--YQQRKIIKSFK--- 334
DI ++G ++R + + LS +K R+C C N IS Y++ +K F+
Sbjct: 190 RRDIKKGKHEGTGQMRREVIKEFLSEVIKKRECASC----NGISPTYRKDAFVKIFEKAL 245
Query: 335 IDKDNL--------------------------------DQSLDKSLNKS-SNQIIRKRE- 360
DK+ + + S D+ ++S S+Q + ++
Sbjct: 246 SDKEKVKMAARNLKYGDAMSRLYQKTMAKKPQENGITHNSSEDEGEDESPSSQDVEMQDA 305
Query: 361 ----------------QGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIAT--DI 402
Q Y+ EV A +L+ E + L TK T D+
Sbjct: 306 DEEETTTTNTSHSAAHQRYISPMEVHARLVELFNKEQELVSLLYNAKPPTKRTTKTTPDM 365
Query: 403 MFIRSLVVPPNNLRPLSMEQMPPV-EHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLS 461
FI L+VPPN RP + + E +N LY++IL + G + + ++N SD+ +
Sbjct: 366 FFITVLLVPPNRFRPEARTGDTEISEAPQNSLYKNILRANGKIAKLHSNVQNG-SSDITA 424
Query: 462 EALKGIRGDTLNNKLQNSWHELQYNVDLLMDA-KLNINKTTGAHQIDGLKQMLDGKTGMI 520
L ++W ELQ +V+ L+D K + DG+KQ L+ K G+
Sbjct: 425 --------------LHHAWVELQESVNTLIDRNKSPVQGAAAKRAEDGIKQKLEKKEGLF 470
Query: 521 RQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGP 580
R+NMMGKRVN+A RSVI+PDP ++ + IGVP FA+ LTYP PVT N +++ VING
Sbjct: 471 RKNMMGKRVNYAARSVISPDPNIDTNEIGVPPVFAQKLTYPEPVTSHNFRDMQQAVINGV 530
Query: 581 NVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
+ +PGA I++E+G +V + + R SLA +L+ P
Sbjct: 531 SKWPGAIAIEDENGQIVNLRNKSVDDRISLANQLLAP 567
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 57/87 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP ++ + IGVP FA+ LTYP PVT N +++ VING + +PGA I+
Sbjct: 481 YAARSVISPDPNIDTNEIGVPPVFAQKLTYPEPVTSHNFRDMQQAVINGVSKWPGAIAIE 540
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
+E+G +V + + R SLA +L+ P
Sbjct: 541 DENGQIVNLRNKSVDDRISLANQLLAP 567
>gi|302418908|ref|XP_003007285.1| DNA-directed RNA polymerase I subunit RPA1 [Verticillium albo-atrum
VaMs.102]
gi|261354887|gb|EEY17315.1| DNA-directed RNA polymerase I subunit RPA1 [Verticillium albo-atrum
VaMs.102]
Length = 1686
Score = 219 bits (558), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 163/557 (29%), Positives = 269/557 (48%), Gaps = 74/557 (13%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDP-CTTCGNN 180
E ++ + T+ E++ +SV ++ + TF++L + +PGGLYD A+G GD C+TC N
Sbjct: 12 ETVEFTFLTETEIRAISVKRIENDSTFDNLLNPVPGGLYDPALGSW---GDSICSTCNLN 68
Query: 181 YTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAG 240
+ C GH GHIELPVPV + +F V LL+ C C + + L+ +++LL G
Sbjct: 69 QSSCPGHAGHIELPVPVYHPVFLDQVLRLLRAQCVYCKGLRLRQRDVHLYSCKLRLLQHG 128
Query: 241 YVTQAKDLEETLFNEENLRL--------------HPAQLVQLVDSHVQSIL-AHGTKICD 285
+ A ++ + + L++ L++ + V+ L H + D
Sbjct: 129 LLRAAHLIDAVGEDFQGLQIPGVTETAEAEEEGSGADNLIRAREFFVKRQLKEHKATVGD 188
Query: 286 INDYK-GGEELR-----------SAFV------------AQVLSRHVKRK-CIFCATPIN 320
+ K +E+R AFV A++ +++ K + ATP++
Sbjct: 189 VRKGKHEAKEMRHLRGHLASYRKDAFVKIFEKPLSERDAAKMAQTNLRTKDAMTAATPVS 248
Query: 321 AI---SYQQRKIIKSFKIDKDNLDQSLD----KSLNKSSNQIIR---------KREQGYV 364
Y + I + D+ ++ S ++S Q + R Q Y+
Sbjct: 249 KTKSNGYTSDEAIADVDSSASDADRDVNMAEPDSSSESEGQAAKVSEGQAKASARSQRYI 308
Query: 365 MASEVEADFKKLWTNEHLFLKCLIPVLDTTKEL--IATDIMFIRSLVVPPNNLRPLSMEQ 422
A EV ++L+ E L + K+ ++ D+ F+++L+VPPN RP +
Sbjct: 309 TAMEVRERLRELFDKEQEVLSLVYNSKPLKKKAGKVSADMFFLQTLLVPPNRFRPEARTG 368
Query: 423 MPPV-EHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWH 481
+ E +N LY+ +L SCG++ V QS + A R T+ + L +W
Sbjct: 369 DSEISEAQQNSLYKLVLRSCGTIARV-------HQS--IGGATTERRARTMTD-LHQAWT 418
Query: 482 ELQYNVDLLMDAKLN-INKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPD 540
+LQ V+ L+D N + +G+KQ L+ K G+ R+NMMGKRVNFA RSVI+PD
Sbjct: 419 DLQNAVNSLIDKDKNPVMGAAAKRNEEGIKQKLEKKEGLFRKNMMGKRVNFAARSVISPD 478
Query: 541 PYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRIS 600
P + + IGVP FA+ LT+P PVT N +++ VING + +PGA I+ E+G + +
Sbjct: 479 PNIETNEIGVPPVFARKLTFPEPVTSHNFRDMQRAVINGVDKWPGAAAIEYENGQITNLR 538
Query: 601 SSQAVQRESLAKRLITP 617
A R SLA +L+ P
Sbjct: 539 GKSADDRISLANQLLAP 555
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 59/100 (59%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IGVP FA+ LT+P PVT N +++ VING + +PGA I+
Sbjct: 469 FAARSVISPDPNIETNEIGVPPVFARKLTFPEPVTSHNFRDMQRAVINGVDKWPGAAAIE 528
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI 113
E+G + + A R SLA +L+ P D + +K+
Sbjct: 529 YENGQITNLRGKSADDRISLANQLLAPTDSNTSGVRNKKV 568
>gi|452981607|gb|EME81367.1| hypothetical protein MYCFIDRAFT_64562 [Pseudocercospora fijiensis
CIRAD86]
Length = 1625
Score = 218 bits (555), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 160/569 (28%), Positives = 269/569 (47%), Gaps = 91/569 (15%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
++ Y T V+QLS ++ S +TF++L + IPGGLY +G + + C TCG +
Sbjct: 14 VRFGYLTADHVRQLSAKRITSAVTFDTLANPIPGGLYSAELGQFMD--NACATCGLKNPQ 71
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYV- 242
C GH GHIELPVP + FF + LL+ +C C K+ + FI +++L+ G +
Sbjct: 72 CPGHPGHIELPVPCYHPTFFDQILRLLRGACIYCGKLKMKRILVTRFICKLRLVRHGLLK 131
Query: 243 ----------------TQA-----KDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGT 281
T+A +D +E+ + + R L Q V+ ++ +GT
Sbjct: 132 ELKELEEKEIQAASDPTKAGAHVDQDEDESDAGDADTRALSLMLEQYVNDAIKRARRNGT 191
Query: 282 KICDINDYKGGEELR--SAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDN 339
++ E R F++ + + ++C C IN SY++ + +K FK
Sbjct: 192 LSTAKSEATNAERRRIIQDFMSNI---NKGKRCGNCGG-INH-SYRKDRFVKLFKKPLSE 246
Query: 340 LDQS--LDKSLN------------KSSNQIIRKREQG----------------------- 362
D + + K L ++ RKR++
Sbjct: 247 KDHAAMVQKGLKARDPLVEMRRKLRAERSRKRKRDEDEAPTIIGGDLEDAMVIDGAAETA 306
Query: 363 ------------YVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVV 410
Y+ S V A ++L+ ++ L + +++ ++ D+ F+++L+V
Sbjct: 307 ARAQKKPKAQDEYLNPSRVYAQLQQLFESDAEVLSLVYG--QASRKGLSADMFFLQTLLV 364
Query: 411 PPNNLRPLSMEQMPPVEHS-RNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRG 469
PPN RP + + + + N Y+SIL +C ++ + + + ++ R
Sbjct: 365 PPNRFRPEARQGDGAISEALENGAYRSILQNCDTITEIQRELSGGKPAETR------YRE 418
Query: 470 DTLNNKLQNSWHELQYNVDLLMDAKLN-INKTTGAHQIDGLKQMLDGKTGMIRQNMMGKR 528
T + L+++W LQ NV+ L+D + + A DG+KQ L+ K GM R+ MMGKR
Sbjct: 419 RTYAD-LESAWLVLQENVNTLIDKDRSPLQGAANARTPDGIKQKLEKKEGMFRKYMMGKR 477
Query: 529 VNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANM 588
VNFA R+VI+PDP + + IGVP FA LTYP PVT WN L+ V NGP+++PGA
Sbjct: 478 VNFAARTVISPDPNIETNEIGVPPVFAVKLTYPEPVTQWNYEELQAAVQNGPHIWPGAVA 537
Query: 589 IQNEDGSVVRISSSQAVQRESLAKRLITP 617
I++E+GSV+ + +R +LA L+ P
Sbjct: 538 IESENGSVISLERKNPEERLALANSLLAP 566
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 56/87 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP + + IGVP FA LTYP PVT WN L+ V NGP+++PGA I+
Sbjct: 480 FAARTVISPDPNIETNEIGVPPVFAVKLTYPEPVTQWNYEELQAAVQNGPHIWPGAVAIE 539
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
+E+GSV+ + +R +LA L+ P
Sbjct: 540 SENGSVISLERKNPEERLALANSLLAP 566
>gi|15230368|ref|NP_191325.1| DNA-directed RNA polymerase I subunit A1 [Arabidopsis thaliana]
gi|4678281|emb|CAB41189.1| DNA-directed RNA polymerase I 190K chain-like protein [Arabidopsis
thaliana]
gi|332646163|gb|AEE79684.1| DNA-directed RNA polymerase I subunit A1 [Arabidopsis thaliana]
Length = 1670
Score = 218 bits (555), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 162/547 (29%), Positives = 255/547 (46%), Gaps = 85/547 (15%)
Query: 120 VPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGN 179
V E ++ + T+Q+V++ S +KV SPI +++G+ PGGLYDL +GP ++ C +CG
Sbjct: 26 VVESVRFSFMTEQDVRKHSFLKVTSPILHDNVGNPFPGGLYDLKLGPKDDK-QACNSCGQ 84
Query: 180 NYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDA 239
C GH GHIEL P+ + L F + L+ +CF CH ++Q+KL+
Sbjct: 85 LKLACPGHCGHIELVFPIYHPLLFNLLFNFLQRACFFCHHFMAKPEDVERAVSQLKLIIK 144
Query: 240 GYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAF 299
G + AK LE + + V DS + + D+ D + L+ A
Sbjct: 145 GDIVSAKQLESNTPTKSKSSDESCESVVTTDS------SEECEDSDVEDQRW-TSLQFAE 197
Query: 300 VAQVLSRHVK----------------RKCIFCATPINAI--SYQQRKIIKSFKIDK---- 337
V VL ++ K +F + A+ S +I+ K+ K
Sbjct: 198 VTAVLKNFMRLSSKSCSRCKGINPKLEKPMFGWVRMRAMKDSDVGANVIRGLKLKKSTSS 257
Query: 338 ----DNLDQSLDKSLNKSSNQIIRKREQGYVMASEVEAD--------------FKKLWTN 379
D D S +L++ + RE+ +A+E E K LW N
Sbjct: 258 VENPDGFDDSGIDALSEVEDGDKETREKSTEVAAEFEEHNSKRDLLPSEVRNILKHLWQN 317
Query: 380 EHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILY 439
EH F + + + E I + F+ S++VPP RP + +EH + ++
Sbjct: 318 EHEFCSFIGDLWQSGSEKIDYSMFFLESVLVPPTKFRPPTTGGDSVMEHPQTVGLNKVIE 377
Query: 440 SCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNS-----WHELQYNVDLLMDAK 494
S I G+ NKL S W LQ +V++L D+K
Sbjct: 378 S------------------------NNILGNACTNKLDQSKVIFRWRNLQESVNVLFDSK 413
Query: 495 LNINKTTGAHQID--GLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPL 552
T Q D G+ Q+L+ K G+ RQ MMGKRVN A RSVI+PDPY+ ++ IG+P
Sbjct: 414 T----ATVQSQRDSSGICQLLEKKEGLFRQKMMGKRVNHACRSVISPDPYIAVNDIGIPP 469
Query: 553 EFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAK 612
FA LTYP VTPWNV LR+ +INGP+++PGA ++ S +++ S++ +R ++A+
Sbjct: 470 CFALKLTYPERVTPWNVEKLREAIINGPDIHPGATHYSDK-SSTMKLPSTEKARR-AIAR 527
Query: 613 RLITPEG 619
+L++ G
Sbjct: 528 KLLSSRG 534
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 64/91 (70%), Gaps = 6/91 (6%)
Query: 9 NHAHVFPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPG 68
NHA RSVI+PDPY+ ++ IG+P FA LTYP VTPWNV LR+ +INGP+++PG
Sbjct: 447 NHAC----RSVISPDPYIAVNDIGIPPCFALKLTYPERVTPWNVEKLREAIINGPDIHPG 502
Query: 69 ANMIQNEDGSVVRISSSQAVQRESLAKRLIT 99
A ++ S +++ S++ +R ++A++L++
Sbjct: 503 ATHYSDK-SSTMKLPSTEKARR-AIARKLLS 531
>gi|167522056|ref|XP_001745366.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776324|gb|EDQ89944.1| predicted protein [Monosiga brevicollis MX1]
Length = 1592
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 159/521 (30%), Positives = 260/521 (49%), Gaps = 51/521 (9%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPI--SERGDPCTTCGNNYTKCKG 186
+ D ++LSV + F+ L + + GGLYD A+GP+ SER CTTC T C G
Sbjct: 10 FDDATTRRLSVKGISHADGFDELNNPMIGGLYDPALGPVDNSER---CTTCHLLGTHCPG 66
Query: 187 HIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAK 246
H+GHIELPV V + LFF+ + LL+ C LCHK L +Q+ LL + +A+
Sbjct: 67 HMGHIELPVHVYHPLFFQQLYQLLRAKCRLCHKFKAGDVPLQLLQHQLDLLARDALVEAR 126
Query: 247 DLEETLF-------NEENLRLHPAQLVQLVDSHVQSILAHGTK-----ICDINDYKGGEE 294
+LE+ L ++ P L ++ + ++ I+ K E
Sbjct: 127 NLEDALDLPRLPSDEGQDPSEGPEHLRAAFEASMARVMERQASERPNPANSIHVAKYRRE 186
Query: 295 LRSAFVAQVLSRHVKRKCIFCATPINAISYQ-------------QRKIIKSFKIDKDNLD 341
L AF+ ++ + C C ++++ QR + + K+++ L
Sbjct: 187 LIEAFLKNTVN---IKSCAHCGAASRRLTHEASVKIFANPLPQKQRARMVAQKLEEMPLL 243
Query: 342 QSLDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLD--TTKELIA 399
S+ ++ S ++ + E V E+ A L TN +F ++ V D + + +
Sbjct: 244 PSIAEAYLTSGHRDEPRGEDTGVSQRELWARHADLLTN--IFASRVLGVNDDGSATRISS 301
Query: 400 TDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDL 459
+ F+R L VPPN RP S+ E+S+ +I+ L+ + ++E ++
Sbjct: 302 YESFFLRVLPVPPNRFRPPSLMGGQTFENSQTITLGAIIKDVDQLRDIFKMRMSEEDGNV 361
Query: 460 LSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQID---GLKQMLDGK 516
K + L +W +LQ +V++L+D+ L G +D G++Q+L+ K
Sbjct: 362 AEYERKRV------ENLNRAWQQLQSHVNILIDSSL----AGGRAALDVQPGIRQLLERK 411
Query: 517 TGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMV 576
G+ R +MMGKRVN+A R+VI+PDP + + +GVP FA LTYP PVTPWNV LR+ V
Sbjct: 412 EGLFRMHMMGKRVNYAARTVISPDPMIGTNEVGVPDCFATRLTYPQPVTPWNVNYLRQCV 471
Query: 577 INGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
+NGP+V+PGA + +EDG V + S + +R +A +L+TP
Sbjct: 472 LNGPDVHPGATHVMDEDGHVT-VLSRELSKRVPIADQLLTP 511
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 60/87 (68%), Gaps = 1/87 (1%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ R+VI+PDP + + +GVP FA LTYP PVTPWNV LR+ V+NGP+V+PGA +
Sbjct: 426 YAARTVISPDPMIGTNEVGVPDCFATRLTYPQPVTPWNVNYLRQCVLNGPDVHPGATHVM 485
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
+EDG V + S + +R +A +L+TP
Sbjct: 486 DEDGHVT-VLSRELSKRVPIADQLLTP 511
>gi|297817092|ref|XP_002876429.1| hypothetical protein ARALYDRAFT_486216 [Arabidopsis lyrata subsp.
lyrata]
gi|297322267|gb|EFH52688.1| hypothetical protein ARALYDRAFT_486216 [Arabidopsis lyrata subsp.
lyrata]
Length = 1678
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 164/547 (29%), Positives = 265/547 (48%), Gaps = 83/547 (15%)
Query: 120 VPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGN 179
V E ++ + T+Q+V++ S +KV SPI +++G PGGLYD +GPI ++ C TCG
Sbjct: 26 VVESVRFSFMTEQDVRKHSFLKVTSPILLDNVGEPYPGGLYDPKLGPIEDK-KACDTCGQ 84
Query: 180 NYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDA 239
C GH GHIEL P+ + L F + L+ +CF+CH ++Q+KL+
Sbjct: 85 LNLACPGHCGHIELVYPIYHPLLFNLLYNFLQRTCFICHHFMAKPYDVERAVSQLKLIIK 144
Query: 240 GYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAF 299
G + AK LE N +S V + + G + D+ D + L+ A
Sbjct: 145 GDIVSAKQLES------NTPTKSDSSDVSCESGVTTDSSEGCEDSDMEDQRW-TSLQFAE 197
Query: 300 VAQVLSRHVK---RKCIFCATPINAISYQQRK-------------------IIKSFKIDK 337
V V+ ++ + C C A++ Q K +I+ K+ K
Sbjct: 198 VTAVMKNFMRLSSKSCNRC----KAVNPQLEKPMFGWVRMKAMKGSDIVANVIRGLKLKK 253
Query: 338 --------DNLDQSL----------DKSLNKSSNQIIRKREQGY------VMASEVEADF 373
D+ D S DK + S +++++ E+ ++ +EV
Sbjct: 254 STSSVENPDDFDDSGIDALSEVEDGDKETREKSTEVVKEFEEHNNSSKRDLLPTEVREIL 313
Query: 374 KKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKL 433
K LW NEH F + + + E I + F+ S++VPP RP + +EH +
Sbjct: 314 KDLWENEHDFCSFIGDLWQSGSEKIDYSMFFLESVLVPPIKFRPSTKGGDSVMEHPQTVG 373
Query: 434 YQSILYSCGSLKSVIMAMKNK-EQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMD 492
+L GS + A NK +QS ++S W LQ +V++L D
Sbjct: 374 LNKVL---GSNIQLGNACTNKLDQSKIISR-----------------WMNLQESVNVLFD 413
Query: 493 AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPL 552
+K ++ + G+ Q+L+ K G+ RQ MMGKRVN A RSVI+PDPY+ ++ IG+P
Sbjct: 414 SKTATVQS--QREGSGICQLLEKKEGLFRQKMMGKRVNHACRSVISPDPYIAVNDIGIPP 471
Query: 553 EFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAK 612
FA LTYP VTPWNV LR+ +INGP+++PGA ++ S V++ S++ +R ++A+
Sbjct: 472 CFALKLTYPERVTPWNVEKLREAIINGPDIHPGATHYSDK-LSTVKLPSTEKARR-AIAR 529
Query: 613 RLITPEG 619
+L++ G
Sbjct: 530 KLLSSRG 536
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 64/91 (70%), Gaps = 6/91 (6%)
Query: 9 NHAHVFPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPG 68
NHA RSVI+PDPY+ ++ IG+P FA LTYP VTPWNV LR+ +INGP+++PG
Sbjct: 449 NHAC----RSVISPDPYIAVNDIGIPPCFALKLTYPERVTPWNVEKLREAIINGPDIHPG 504
Query: 69 ANMIQNEDGSVVRISSSQAVQRESLAKRLIT 99
A ++ S V++ S++ +R ++A++L++
Sbjct: 505 ATHYSDK-LSTVKLPSTEKARR-AIARKLLS 533
>gi|431899744|gb|ELK07695.1| DNA-directed RNA polymerase I subunit RPA1 [Pteropus alecto]
Length = 1706
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 158/508 (31%), Positives = 251/508 (49%), Gaps = 86/508 (16%)
Query: 135 KQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELP 194
++LSV + +P +SLG+ GLYDLA+GP R + C+TC +++ C GH+GHIELP
Sbjct: 60 EKLSVKSITNPRYLDSLGNPSVNGLYDLALGPADSR-EVCSTCVQDFSNCAGHLGHIELP 118
Query: 195 VPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETL-- 252
+ V N L F + LLL+ SC CH + P L + Q+++L+ G + +LE L
Sbjct: 119 LTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYELERILNR 178
Query: 253 FNEENLRLHPAQLVQLVDSHVQSIL---------AHGTKICDINDYKGGEELRSAFVAQV 303
F EEN ++ + ++ + I+ AH +C E +S +
Sbjct: 179 FLEENSDPTAFEIQEELERYTTKIVQNNLLGSQGAHVKNVC---------ESKSNLITYF 229
Query: 304 LSRHV-KRKCIFCATPINAISYQQRKII----------KSFKIDKDNLDQSLDKSLNKSS 352
H+ ++C C T + + + + K+ + D + L K
Sbjct: 230 WKAHMTAKRCPHCKTGRSVVRKEHNSKLTITYPAMVHKKAGQKDTEPLGGGFLKDFE--- 286
Query: 353 NQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPP 412
RKR + V +++TN + + D++ IR L
Sbjct: 287 ----RKRYR------PVNRLGDQMFTNGQT----------VNLQAVMKDMVLIRKL---- 322
Query: 413 NNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLS---EALKGIRG 469
L ++ EQ P E V K++E+ ++ L + G
Sbjct: 323 --LALMAQEQELPCE-------------------VAAPAKDEEKDSSVTMDRSFLSMLPG 361
Query: 470 DTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRV 529
+L +KL N W LQ +V+++ D++++ + G++Q L+ K G+ R++MMGKRV
Sbjct: 362 QSLTDKLYNIWIRLQSHVNIVFDSEMD---KLMMEKYPGIRQTLEKKDGLFRKHMMGKRV 418
Query: 530 NFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 589
++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 419 DYAARSVICPDLYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMV 478
Query: 590 QNEDGSVVRISSSQAVQRESLAKRLITP 617
NEDGS +S+ QRE++AK+L+TP
Sbjct: 479 INEDGSRTALSAVDLTQREAVAKQLLTP 506
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 66/87 (75%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 420 YAARSVICPDLYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 479
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +S+ QRE++AK+L+TP
Sbjct: 480 NEDGSRTALSAVDLTQREAVAKQLLTP 506
>gi|70996010|ref|XP_752760.1| DNA-directed RNA polymerase I subunit (Rpa190) [Aspergillus
fumigatus Af293]
gi|66850395|gb|EAL90722.1| DNA-directed RNA polymerase I subunit (Rpa190), putative
[Aspergillus fumigatus Af293]
Length = 1680
Score = 216 bits (549), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 166/580 (28%), Positives = 268/580 (46%), Gaps = 107/580 (18%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
++ Y+D+++K +SV ++ + T +S + +PGGLYD A+G + CTTC N
Sbjct: 15 IEFGVYSDEDIKSISVKRIHNTPTLDSFNNPVPGGLYDPALGAWGDH--VCTTCRQNSWS 72
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVT 243
C GH GHIELPV V N FF + LL+ C CH+ + ++ +++LL G V
Sbjct: 73 CTGHPGHIELPVRVYNVTFFDQLYRLLRAQCVYCHRFQMARVQINAYVCKLRLLQYGLVD 132
Query: 244 Q-----------------AKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDI 286
+ AKD +++ EE+ LV +++V+ ++ +
Sbjct: 133 EVEAIEAMGTGQGNKKKSAKDADDSGSEEED----DDDLVARRNAYVKKVIREAHAAGRL 188
Query: 287 NDYKGGE------ELRSAFVAQVLSRHVK-RKCIFCA--TPINAISYQQRKIIKSF---- 333
G E R V Q V +KC C+ +P SY++ + K F
Sbjct: 189 KGIMSGAKNPMAAEQRRTLVKQFFKDLVSIKKCSSCSGISP----SYRRDRFSKIFRKPL 244
Query: 334 --------------------------KID---KDNLDQSLDKSLNKSS------------ 352
K D K+++ + + N S
Sbjct: 245 PEKSRLAMVQAGFQAPNSLILLQQAKKFDMKTKESMANGISDTANAVSESHGAEEEVARG 304
Query: 353 NQIIRKREQG---------YVMASEVEADFKKLWTNEHLFLKCLIPV--LDTTKELIATD 401
N ++ + E Y+ + EV A L+ E L + L + ++ D
Sbjct: 305 NAVVAQAESKKSAAGDAGQYMPSPEVHAAMVLLFEKEKEILSLIYNSRPLPKKEAKVSPD 364
Query: 402 IMFIRSLVVPPNNLRPLSMEQMPP--VEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDL 459
+ FI++++VPPN RP + Q P +E +N + IL +C + + +KE+ +
Sbjct: 365 MFFIKNILVPPNKYRP-AAPQGPGEIMEAQQNTPFTQILKNCDIINQI-----SKERQNA 418
Query: 460 LSEALKGIRG--DTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKT 517
++++ +R D L+ +Q LQ V+ L+D + + +G+KQ+L+ K
Sbjct: 419 GADSVTRMRDYRDLLHAIVQ-----LQDTVNGLIDKERGASGPAAGQAANGIKQILEKKE 473
Query: 518 GMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVI 577
G+ R+NMMGKRVNFA RSVI+PDP + + IGVPL FAK LTYP PVT N +++ VI
Sbjct: 474 GLFRKNMMGKRVNFAARSVISPDPNIETNEIGVPLVFAKKLTYPEPVTNHNFWEMKQAVI 533
Query: 578 NGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
NGP+ YPGA I+NE G V + +R +LA +L+ P
Sbjct: 534 NGPDKYPGATAIENELGQVTNLKFKSLDERTALANQLLAP 573
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 62/100 (62%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IGVPL FAK LTYP PVT N +++ VINGP+ YPGA I+
Sbjct: 487 FAARSVISPDPNIETNEIGVPLVFAKKLTYPEPVTNHNFWEMKQAVINGPDKYPGATAIE 546
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI 113
NE G V + +R +LA +L+ P + + + +K+
Sbjct: 547 NELGQVTNLKFKSLDERTALANQLLAPSNWRMKGARNKKV 586
>gi|225217014|gb|ACN85301.1| putative RNA polymerase A(I) large subunit [Oryza coarctata]
Length = 1830
Score = 216 bits (549), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 153/543 (28%), Positives = 273/543 (50%), Gaps = 82/543 (15%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
+ +Y D E++++SV ++ ++ +PGGL D AMGP ++ D C +CG + +
Sbjct: 16 IHFSFYNDDEIRRISVKQITKADRLDAKNCPVPGGLLDPAMGPTNDT-DTCKSCGQHSVR 74
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVT 243
C GH GHIEL P+ N L F ++ LL ++CF CHK + + N+++LL G +
Sbjct: 75 CPGHFGHIELAKPLFNPLLFMSLKNLLHVTCFHCHKFRLNRGQVDRYTNELELLVRGDIA 134
Query: 244 QAKDLEET---LFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFV 300
AK+LE++ +F E+ +L S ++ ++ +E S F
Sbjct: 135 LAKNLEDSGGKVFLAEDDETEATSGDKLACSEGENKTWTSIQL---------KEALSIF- 184
Query: 301 AQVLSRHVKRKCIFC-------ATPI------NAISYQQRKIIKSFKIDKDN-------- 339
A++L + ++KC+ C + P+ + S + +I K+ D+
Sbjct: 185 AKLLKKR-QKKCVHCDKKNPKISHPVYGWLIKDTTSSVRANVIADAKLSGDSRVHDSRET 243
Query: 340 ----LDQSLDK---SLNKSSNQIIRKRE-----------QGYVMASEVEADFKKLWTNEH 381
LD+ L S S+N+ R + + +++ +EVE+ K LW NE
Sbjct: 244 AVSGLDEELTSPGTSSRGSTNETRRISDDTIKEMVASSGKKHLLTTEVESILKNLWKNEA 303
Query: 382 LFLKCLIP----VLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSI 437
F L L+ + + ++ F+++L+V PN RP + +EH +N L
Sbjct: 304 RFCMLLCDFQQNTLNVSDKGRGYEMFFLKNLLVAPNRFRPSISSSLGIMEHPQNVLL--- 360
Query: 438 LYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNI 497
G ++ +A+ +QS+ S ++ +R W +LQ +V++L D+ +
Sbjct: 361 ----GKVQEANLAL---QQSNTSSNHMEVLR----------RWMDLQRSVNVLYDSSKGL 403
Query: 498 NKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKT 557
K+ +G++Q+L+ K G++RQ MMGKRVN+A RSVI+PDPYL ++ IG+P FA
Sbjct: 404 AKS--EKNANGIRQLLEKKEGILRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPVFATR 461
Query: 558 LTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
LTYP VTPWN L++ + NG +++PGA ++ + ++ ++ ++ +R ++AK L
Sbjct: 462 LTYPEKVTPWNARKLQEAINNGADIHPGATHYRD-NNNMYKLQAAPP-KRRAIAKMLPAS 519
Query: 618 EGN 620
G+
Sbjct: 520 RGS 522
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 40/56 (71%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGA 69
+ RSVI+PDPYL ++ IG+P FA LTYP VTPWN L++ + NG +++PGA
Sbjct: 435 YACRSVISPDPYLAVNEIGIPPVFATRLTYPEKVTPWNARKLQEAINNGADIHPGA 490
>gi|159131514|gb|EDP56627.1| DNA-directed RNA polymerase I subunit (Rpa190), putative
[Aspergillus fumigatus A1163]
Length = 1680
Score = 215 bits (548), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 166/580 (28%), Positives = 268/580 (46%), Gaps = 107/580 (18%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
++ Y+D+++K +SV ++ + T +S + +PGGLYD A+G + CTTC N
Sbjct: 15 IEFGVYSDEDIKSISVKRIHNTPTLDSFNNPVPGGLYDPALGAWGDH--VCTTCRQNSWS 72
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVT 243
C GH GHIELPV V N FF + LL+ C CH+ + ++ +++LL G V
Sbjct: 73 CTGHPGHIELPVRVYNVTFFDQLYRLLRAQCVYCHRFQMARVQINAYVCKLRLLQYGLVD 132
Query: 244 Q-----------------AKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDI 286
+ AKD +++ EE+ LV +++V+ ++ +
Sbjct: 133 EVEAIEAMGTGQGNKKKSAKDADDSGSEEED----DDDLVARRNAYVKKVIREAHAAGRL 188
Query: 287 NDYKGGE------ELRSAFVAQVLSRHVK-RKCIFCA--TPINAISYQQRKIIKSF---- 333
G E R V Q V +KC C+ +P SY++ + K F
Sbjct: 189 KGIMSGAKNPMAAEQRRTLVKQFFKDLVSIKKCSSCSGISP----SYRRDRFSKIFRKPL 244
Query: 334 --------------------------KID---KDNLDQSLDKSLNKSS------------ 352
K D K+++ + + N S
Sbjct: 245 PEKSRLAMVQAGFQAPNSLILLQQAKKFDMKTKESMANGISYTANAVSESHGAEEEVARG 304
Query: 353 NQIIRKREQG---------YVMASEVEADFKKLWTNEHLFLKCLIPV--LDTTKELIATD 401
N ++ + E Y+ + EV A L+ E L + L + ++ D
Sbjct: 305 NAVVAQAESKKSAAGDAGQYMPSPEVHAAMVLLFEKEKEILSLIYNSRPLPKKEAKVSPD 364
Query: 402 IMFIRSLVVPPNNLRPLSMEQMPP--VEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDL 459
+ FI++++VPPN RP + Q P +E +N + IL +C + + +KE+ +
Sbjct: 365 MFFIKNILVPPNKYRP-AAPQGPGEIMEAQQNTPFTQILKNCDIINQI-----SKERQNA 418
Query: 460 LSEALKGIRG--DTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKT 517
++++ +R D L+ +Q LQ V+ L+D + + +G+KQ+L+ K
Sbjct: 419 GADSVTRMRDYRDLLHAIVQ-----LQDTVNGLIDKERGASGPAAGQAANGIKQILEKKE 473
Query: 518 GMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVI 577
G+ R+NMMGKRVNFA RSVI+PDP + + IGVPL FAK LTYP PVT N +++ VI
Sbjct: 474 GLFRKNMMGKRVNFAARSVISPDPNIETNEIGVPLVFAKKLTYPEPVTNHNFWEMKQAVI 533
Query: 578 NGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
NGP+ YPGA I+NE G V + +R +LA +L+ P
Sbjct: 534 NGPDKYPGATAIENELGQVTNLKFKSLDERTALANQLLAP 573
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 62/100 (62%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IGVPL FAK LTYP PVT N +++ VINGP+ YPGA I+
Sbjct: 487 FAARSVISPDPNIETNEIGVPLVFAKKLTYPEPVTNHNFWEMKQAVINGPDKYPGATAIE 546
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI 113
NE G V + +R +LA +L+ P + + + +K+
Sbjct: 547 NELGQVTNLKFKSLDERTALANQLLAPSNWRMKGARNKKV 586
>gi|47214109|emb|CAG00674.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1949
Score = 215 bits (547), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 163/539 (30%), Positives = 269/539 (49%), Gaps = 86/539 (15%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNY 181
E + Y+ +E+++LSV + S +++G+ P LYDLA+GP ++ + C+TC ++
Sbjct: 13 EGMSFGVYSAEELRKLSVKAITSARFLDAVGNVAPNSLYDLALGP-ADNKEVCSTCCQDF 71
Query: 182 TKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGY 241
+ C GH+G +ELP+PV N LFF + LLL SC CH + P + L +NQ+KLLD G
Sbjct: 72 SNCPGHLGRVELPLPVYNPLFFDKLYLLLCGSCLSCHTLTCPRAAIHLLLNQLKLLDHGA 131
Query: 242 VTQAKDLEETLFN--EENLRLHPAQLVQLVDSHVQSILAHGTKICDIND-YKGGEELRSA 298
+ + +E+ L EEN + ++ +++ S+L TK + + K E R++
Sbjct: 132 IQEVYQIEQVLNQQLEENPKATGDEIEKVLKEFTVSVLGLNTKDAENSKPVKHAVEKRNS 191
Query: 299 FVAQVLSRHVK-RKCIFCATPINAISYQQR-KIIKSFKIDKDNLDQSLDKSLNKSSNQII 356
+ + + +K RKC C + + + + K+I + + N +
Sbjct: 192 LINEFWNIQMKTRKCPHCRSGRHTVRREHNSKLIVT-------MPAGARTGSNTDEETMA 244
Query: 357 RKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIA--------TDIMFIRSL 408
KR Y+ AS KLW NE FLK L +E+++ +D+ F+ L
Sbjct: 245 GKR--FYMTASTAREHTNKLWENEGFFLKFL---FSGVEEMVSQQGVNYCYSDLFFLEML 299
Query: 409 VVPPNNLRPLSM--EQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEA--- 463
VVPP RP++ +QM + N Q+++ CG+++ +MA+ +E++ + E
Sbjct: 300 VVPPCRYRPINRLGDQMFTNGQTVN--LQAVMKDCGTIRK-LMALIAEEKTAVEVEVTNK 356
Query: 464 -------------------LKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAH 504
L GI G TL +KL N+W LQ V+++ D+ ++
Sbjct: 357 VLKKEEIQGPHTFTPDQTFLSGIPGLTLTDKLYNTWVRLQTRVNIVFDSDMD-------- 408
Query: 505 QIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPD-----PYLNIDSIGVPLE-FAKTL 558
K M+D G+ R V+ PD P+ ++ +P + FA L
Sbjct: 409 -----KLMMDKYPGI--------------RQVLYPDMEQRPPFFMTLALSLPTQVFATKL 449
Query: 559 TYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
TYP PVTPWNV LR+ V+NGPNV+PGA+M+ NEDG +S++ QR ++AK+L+TP
Sbjct: 450 TYPQPVTPWNVKELRQAVLNGPNVHPGASMVINEDGRKTILSATNMAQRAAVAKQLLTP 508
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 69/107 (64%), Gaps = 8/107 (7%)
Query: 17 RSVITPD-----PYLNIDSIGVPLE-FAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGAN 70
R V+ PD P+ ++ +P + FA LTYP PVTPWNV LR+ V+NGPNV+PGA+
Sbjct: 419 RQVLYPDMEQRPPFFMTLALSLPTQVFATKLTYPQPVTPWNVKELRQAVLNGPNVHPGAS 478
Query: 71 MIQNEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKIITRQ 117
M+ NEDG +S++ QR ++AK+L+TP + H+ M KI+ R
Sbjct: 479 MVINEDGRKTILSATNMAQRAAVAKQLLTPCPEPHK--MPIKIVNRH 523
>gi|393216084|gb|EJD01575.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Fomitiporia mediterranea MF3/22]
Length = 1706
Score = 214 bits (546), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 166/575 (28%), Positives = 269/575 (46%), Gaps = 82/575 (14%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
+ + T ++V+++SV ++ +PI + L GGLYD A+GP S+R D C TC +
Sbjct: 14 ISFSFLTSEDVRRISVKQITNPILLDELNRPTIGGLYDPALGP-SDRKDICATCRLTHFT 72
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVT 243
C GH GHIELP P+ + LF + LLK +C CH+ I T + ++ +++LLD G +
Sbjct: 73 CPGHFGHIELPSPIFHPLFMVSMYKLLKGTCTFCHRFKIRRTELVKYVAKLRLLDHGLLD 132
Query: 244 QAKDLEE----TLFNEEN--------------------------LRLHPAQ--------- 264
A ++E NE+ LR+HP +
Sbjct: 133 YANAIDEMKPNVSQNEDGSEDEDTAADESLEEFSRRVKMTTQLFLRMHPERKRDDYKDGL 192
Query: 265 LVQLVDSHVQSILAH-GTKICDINDYKG-----GEELRSAFVAQVLSRHVKRKCIFCATP 318
+ Q + LA K C ND K +E + V L+ K + I
Sbjct: 193 VFQARKDVIAEFLATTALKRCQNNDCKAFAHSLRKEGHTKIVELDLTTKQKAQHIQMNLR 252
Query: 319 INAISYQQRKIIKS---------------------FKIDKDNLD-QSLDKSLNKSSN--- 353
N I +Q+R +S F ++D + + ++L KS++
Sbjct: 253 RNNILHQERHGRQSTQYADEDVSGSEESEGEGEAVFSDEEDGAEPEEKREALPKSASGKV 312
Query: 354 QIIRKREQGYVMASEVEADFKKLWTNE----HLFLKCLIPVLDTTKELIA---TDIMFIR 406
+ +R R + + E A ++L+ NE L P + I+ DI F+
Sbjct: 313 KTMRGRNERIITPEECRAHLRRLFANEVSMCSLIFGRHGPFARVNTDRISPASADIFFMD 372
Query: 407 SLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKG 466
L+V P RP + EH N+L +L + SL+ A++ + D + +
Sbjct: 373 CLLVSPTRFRPPAKMGDTLFEHPHNELLAKVLNTSYSLRDQADALRAANEKDSTVDEVSR 432
Query: 467 IRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKT-TGAHQIDGLKQMLDGKTGMIRQNMM 525
R + +L S +LQ +V+ +D+ N + G G+KQ L+ K G+ R NMM
Sbjct: 433 RR---MLGRLIESLVQLQVDVNSFIDSSKNPQRMRQGKLPPAGVKQNLEKKEGLFRMNMM 489
Query: 526 GKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPG 585
GKRVN++ RSVI+PD ++ + IGVP FA+ LT+P PVT NV L+R++V NG + YPG
Sbjct: 490 GKRVNYSARSVISPDVNIDTNEIGVPPVFARKLTFPEPVTEHNVHLMRELVTNGHHKYPG 549
Query: 586 ANMIQNEDGSVVRISSSQAVQRESLAKRLITPEGN 620
A++I+ EDG+ + +R +LA +L+TP+ +
Sbjct: 550 ASIIELEDGTKQSLEKMNVEERRALANQLLTPQND 584
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 62/92 (67%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PD ++ + IGVP FA+ LT+P PVT NV L+R++V NG + YPGA++I+
Sbjct: 495 YSARSVISPDVNIDTNEIGVPPVFARKLTFPEPVTEHNVHLMRELVTNGHHKYPGASIIE 554
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQH 105
EDG+ + +R +LA +L+TP++ H
Sbjct: 555 LEDGTKQSLEKMNVEERRALANQLLTPQNDLH 586
>gi|145356916|ref|XP_001422669.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582912|gb|ABP00986.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 1663
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 164/552 (29%), Positives = 262/552 (47%), Gaps = 51/552 (9%)
Query: 96 RLITPEDQQHRAIMKEKIITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTI 155
R T +HR +K++ + ++E+ +Y ++V+++SV ++ +P+ F+ L + +
Sbjct: 3 RDATATTARHR--VKQRGLVQKEIASA--SFSFYDAEDVRKISVKRITNPVLFDGLNNAV 58
Query: 156 PGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCF 215
GLYD A+GP + C TC C GH GH+EL VPV N L F V LLK +CF
Sbjct: 59 ADGLYDPALGPTDSK-TTCVTCKFPGGMCAGHFGHLELVVPVYNPLTFGTVVRLLKTTCF 117
Query: 216 LCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQS 275
CHK + A+ F ++++L G + A+ + + + + + + + V+ +
Sbjct: 118 HCHKFRLHASRVRRFRERLEMLMDGDMEAAEGVLPEISKKAKEEM--SSVFKEVEGDGDA 175
Query: 276 ILAHGTKICDI----NDYKGGEELRSAFVAQVLSRHV--------KRKCIFCATPINAIS 323
I D+ GE + + +R++ +KC C +S
Sbjct: 176 EEMDLDNIHDVLPRLKTRGRGEPVVWTSITSTAARNLIKEFLAIQPKKCENCGAMNPKVS 235
Query: 324 YQQRKIIKSFKIDKDNLDQSLDKSLN-------KSSNQIIRKREQG-----YVMASEVEA 371
+ I + K + + +L K ++ S + +R Q Y+ E A
Sbjct: 236 PEGHNKIFRGALPKAHHENNLAKGIDINDDMASDSETMSVDERVQEAAKSLYITPIEARA 295
Query: 372 DFKKLWTNEHLFLKCL---IPVLDTTK--ELIATD--IMFIRSLVVPPNNLRPLSMEQMP 424
K+LW E+ F + P TK E +D FI++L+V P+ RP S
Sbjct: 296 LLKRLWMYEYDFCSMIWATTPPNKCTKRGEERRSDPARFFIQTLLVAPSKFRPPSKMGDM 355
Query: 425 PVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQ 484
+H +N +I+ + SL + + A + +R +W LQ
Sbjct: 356 IFDHPQNTALTTIIQANLSLAELFRTPPTVPEP-PEVRAGRAVR----------AWLALQ 404
Query: 485 YNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLN 544
V+ L+DA T A Q G++Q L+ K G+ R NMMGKRVNFA RSVI+PDPYL
Sbjct: 405 SGVNRLIDA--TKADTQEAKQAIGIRQQLEKKEGLFRMNMMGKRVNFAARSVISPDPYLG 462
Query: 545 IDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQA 604
IGVP FAK LT+P VTP NV L+R +V NGP ++PGAN I++E G V+ + A
Sbjct: 463 TSEIGVPPVFAKKLTFPELVTPHNVDLMRTLVENGPEIHPGANAIEDERGRVIHLDKFTA 522
Query: 605 VQRESLAKRLIT 616
+R ++AK L+
Sbjct: 523 EKRAAIAKTLLA 534
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 58/86 (67%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDPYL IGVP FAK LT+P VTP NV L+R +V NGP ++PGAN I+
Sbjct: 449 FAARSVISPDPYLGTSEIGVPPVFAKKLTFPELVTPHNVDLMRTLVENGPEIHPGANAIE 508
Query: 74 NEDGSVVRISSSQAVQRESLAKRLIT 99
+E G V+ + A +R ++AK L+
Sbjct: 509 DERGRVIHLDKFTAEKRAAIAKTLLA 534
>gi|225217045|gb|ACN85329.1| putative RNA polymerase A(I) large subunit [Oryza brachyantha]
Length = 1138
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 155/546 (28%), Positives = 267/546 (48%), Gaps = 83/546 (15%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNY 181
E + +Y D E+K++SV ++ P ++ +PGGL D AMGP S+ D C +CG +
Sbjct: 14 ESIHFSFYNDDEIKRISVKQITKPDRLDAKNCPVPGGLLDPAMGPTSDT-DTCKSCGQHS 72
Query: 182 TKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGY 241
+C GH GHIEL P+ N L F ++ LL ++CF CHK + + ++++LL G
Sbjct: 73 VRCPGHFGHIELAKPLFNPLLFLSLKNLLHMTCFHCHKFRLNREQVDRYTDELELLVKGD 132
Query: 242 VTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVA 301
+ AK+LE++ V L + + C ++ K ++ V
Sbjct: 133 IAHAKNLEDS-----------GGKVLLEEDDKTEATSGDKSTCSESENKTWTSIQLKEVL 181
Query: 302 QVLSRHVKR---KCIFC-------ATPINA-------ISYQQRKIIKSFKIDKD------ 338
+ + +K+ KC C + PI IS + I K+ D
Sbjct: 182 SIFANFMKKRQKKCTHCNKKNPKISHPIYGWLIKDADISAVRANAIADAKLSGDVRFHDS 241
Query: 339 ------NLDQSLDK---SLNKSSNQIIRKRE-----------QGYVMASEVEADFKKLWT 378
LD+ L S S+N+ R + + +++A+EVE+ K LW
Sbjct: 242 RETGVSGLDEELTSPGTSSRGSTNETRRISDDTIKEMVASSGKKHLLATEVESILKDLWK 301
Query: 379 NEHLFLKCLIP----VLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLY 434
NE F L L+ +++ ++ F+++L+V PN RP + +EH +N L
Sbjct: 302 NEARFCMLLCDFQQNTLNVSEKKRGYEMFFLKNLLVAPNRFRPSIHSSLGIMEHPQNILL 361
Query: 435 QSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAK 494
+ + +A+ +QS+ S ++ +R W ++Q +V++L D+
Sbjct: 362 SKV-------QEANLAL---QQSNAASNHMEVLR----------RWMDMQRSVNVLYDSS 401
Query: 495 LNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEF 554
+ K +G++Q+L+ K G++RQ MMGKRVN+A RSVI+PDPYL ++ IG+P F
Sbjct: 402 KGLAKN--EKNANGIRQLLEKKEGILRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPVF 459
Query: 555 AKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRL 614
A LTYP VTPWN L++ + NG +++PGA + ++ ++ ++ ++ A +R ++AK L
Sbjct: 460 ATRLTYPEKVTPWNARKLQEAINNGADIHPGATHYR-DNNNMYKLQAAPA-KRRAIAKML 517
Query: 615 ITPEGN 620
G+
Sbjct: 518 PASRGS 523
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 57/84 (67%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDPYL ++ IG+P FA LTYP VTPWN L++ + NG +++PGA +
Sbjct: 436 YACRSVISPDPYLAVNEIGIPPVFATRLTYPEKVTPWNARKLQEAINNGADIHPGATHYR 495
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
++ ++ ++ ++ A +R ++AK L
Sbjct: 496 -DNNNMYKLQAAPA-KRRAIAKML 517
>gi|339237703|ref|XP_003380406.1| RNA polymerase Rpb1, domain 5 superfamily [Trichinella spiralis]
gi|316976752|gb|EFV59978.1| RNA polymerase Rpb1, domain 5 superfamily [Trichinella spiralis]
Length = 1728
Score = 211 bits (537), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 152/515 (29%), Positives = 252/515 (48%), Gaps = 68/515 (13%)
Query: 130 TDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
T +EV ++SV ++ P F++L H I GGL D A GP+ + + C TC +C GH G
Sbjct: 36 TPEEVLEISVKEITVPNAFDALYHPIAGGLCDPAFGPV-DYMEYCATCSFTGAQCPGHYG 94
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLL--FINQIKLLDAGYVTQAKD 247
HI LP+P+ N L F L++ +CF+CH++ + L F Q++ LD G + A +
Sbjct: 95 HIRLPLPMFNPLLFDITYQLIRGTCFVCHRLFVADNEVALKIFFAQMEALDEGNLALASE 154
Query: 248 LE-------------ETLFNEEN------LRLHPAQLVQLVDSHVQSILAHGTKICDIND 288
+ + L N EN L+ +L + ++ + L + +
Sbjct: 155 IADISTECVSDSPNLQNLNNSENSVKKNMLKERLEELKKNRKTNSKGNLEITKNVSQVR- 213
Query: 289 YKGGEELRSAFVAQVLSRHVKRKCIFCATPINAI-SYQQRKIIKSFKIDKDNLDQSLDKS 347
EL S F L R +K +C C + + I + +R +I + K L + S
Sbjct: 214 ----RELISEFCTNFLYRRIK-QCPSCTSQVTGIRNIGKRAVILTLPSKKGILKNKSNDS 268
Query: 348 LNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRS 407
L +N R Q YV A+E F I TD++F+
Sbjct: 269 LK--NNNKYAHRNQRYVSAAEYADGF------------------------IPTDLLFLTH 302
Query: 408 LVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIM-AMKNKEQSDLLSEALKG 466
L+V P RP+ ++ +++Y++I+ C S+K + A +K Q++ G
Sbjct: 303 LLVMPPKFRPIVELAGRKCDNPISQIYRNIIEDCLSIKRFMQKATADKWQTE------GG 356
Query: 467 IRGDTLNN---KLQNSWHELQYNVDLLMDAKLNINKTTGAH---QIDGLKQMLDGKTGMI 520
GD + + ++Q +Q +V+ L D +G GL+Q+L+ K G+
Sbjct: 357 ESGDAVQDSEEQIQTLCLTMQSHVNELYDNSETSRIASGLTVQLNAKGLRQVLEKKEGLF 416
Query: 521 RQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGP 580
R++MMGKRVNFA RSVI PDPY+++D +G+P FAK L++P V N T + + V++GP
Sbjct: 417 RKHMMGKRVNFAARSVIAPDPYMSVDGVGIPEVFAKRLSFPEAVFSANATAMSEAVLHGP 476
Query: 581 NVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLI 615
+V+PGAN I +E G + +++ + ++R +AKRL+
Sbjct: 477 DVHPGANFIIDERGMKIYLNAGKEIERSGMAKRLL 511
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 59/85 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI PDPY+++D +G+P FAK L++P V N T + + V++GP+V+PGAN I
Sbjct: 427 FAARSVIAPDPYMSVDGVGIPEVFAKRLSFPEAVFSANATAMSEAVLHGPDVHPGANFII 486
Query: 74 NEDGSVVRISSSQAVQRESLAKRLI 98
+E G + +++ + ++R +AKRL+
Sbjct: 487 DERGMKIYLNAGKEIERSGMAKRLL 511
>gi|44889981|emb|CAF32099.1| DNA-directed RNA polymerase i, putative [Aspergillus fumigatus]
Length = 1692
Score = 211 bits (537), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 167/591 (28%), Positives = 265/591 (44%), Gaps = 117/591 (19%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMG--------------PISE 169
++ Y+D+++K +SV ++ + T +S + +PGGLYD A+G P
Sbjct: 15 IEFGVYSDEDIKSISVKRIHNTPTLDSFNNPVPGGLYDPALGAWGDHLSLVIAYFGPFWL 74
Query: 170 RGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLL 229
CTTC N C GH GHIELPV V N FF + LL+ C CH+ +
Sbjct: 75 TAFSCTTCRQNSWSCTGHPGHIELPVRVYNVTFFDQLYRLLRAQCVYCHRFQMARVQINA 134
Query: 230 FINQIKLLDAGYVTQ-----------------AKDLEETLFNEENLRLHPAQLVQLVDSH 272
++ +++LL G V + AKD +++ EE+ LV +++
Sbjct: 135 YVCKLRLLQYGLVDEVEAIEAMGTGQGNKKKSAKDADDSGSEEED----DDDLVARRNAY 190
Query: 273 VQSILAHGTKICDINDYKGGE------ELRSAFVAQVLSRHVK-RKCIFCA--------- 316
V+ ++ + G E R V Q V +KC C+
Sbjct: 191 VKKVIREAHAAGRLKGIMSGAKNPMAAEQRRTLVKQFFKDLVSIKKCSSCSGYRRDRFSK 250
Query: 317 --------------------TPINAISYQQRKIIKSFKID---KDNLDQSLDKSLNKSS- 352
P + I QQ K K D K+++ + + N S
Sbjct: 251 IFRKPLPEKSRLAMVQAGFQAPNSLILLQQAK-----KFDMKTKESMANGISDTANAVSE 305
Query: 353 -----------NQIIRKREQG---------YVMASEVEADFKKLWTNEHLFLKCLIPV-- 390
N ++ + E Y+ + EV A L+ E L +
Sbjct: 306 SHGAEEEVARGNAVVAQAESKKSAAGDAGQYMPSPEVHAAMVLLFEKEKEILSLIYNSRP 365
Query: 391 LDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPP--VEHSRNKLYQSILYSCGSLKSVI 448
L + ++ D+ FI++++VPPN RP + Q P +E +N + IL +C + +
Sbjct: 366 LPKKEAKVSPDMFFIKNILVPPNKYRP-AAPQGPGEIMEAQQNTPFTQILKNCDIINQI- 423
Query: 449 MAMKNKEQSDLLSEALKGIRG--DTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQI 506
+KE+ + ++++ +R D L+ +Q LQ V+ L+D + +
Sbjct: 424 ----SKERQNAGADSVTRMRDYRDLLHAIVQ-----LQDTVNGLIDKERGASGPAAGQAA 474
Query: 507 DGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTP 566
+G+KQ+L+ K G+ R+NMMGKRVNFA RSVI+PDP + + IGVPL FAK LTYP PVT
Sbjct: 475 NGIKQILEKKEGLFRKNMMGKRVNFAARSVISPDPNIETNEIGVPLVFAKKLTYPEPVTN 534
Query: 567 WNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
N +++ VINGP+ YPGA I+NE G V + +R +LA +L+ P
Sbjct: 535 HNFWEMKQAVINGPDKYPGATAIENELGQVTNLKFKSLDERTALANQLLAP 585
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 62/100 (62%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IGVPL FAK LTYP PVT N +++ VINGP+ YPGA I+
Sbjct: 499 FAARSVISPDPNIETNEIGVPLVFAKKLTYPEPVTNHNFWEMKQAVINGPDKYPGATAIE 558
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI 113
NE G V + +R +LA +L+ P + + + +K+
Sbjct: 559 NELGQVTNLKFKSLDERTALANQLLAPSNWRMKGARNKKV 598
>gi|19113092|ref|NP_596300.1| DNA-directed RNA polymerase I complex large subunit Nuc1
[Schizosaccharomyces pombe 972h-]
gi|3334489|sp|P15398.2|RPA1_SCHPO RecName: Full=DNA-directed RNA polymerase I subunit rpa1; AltName:
Full=DNA-directed RNA polymerase I 190 kDa polypeptide;
AltName: Full=DNA-directed RNA polymerase I largest
subunit
gi|173433|gb|AAA35326.1| RNA polymerase I largest subunit [Schizosaccharomyces pombe]
gi|2832886|emb|CAA16827.1| DNA-directed RNA polymerase I complex large subunit Nuc1
[Schizosaccharomyces pombe]
Length = 1689
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 167/586 (28%), Positives = 287/586 (48%), Gaps = 97/586 (16%)
Query: 117 QEVVPEILKLKY--YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPC 174
Q V EI +K+ Y +V+++SV ++ +P+ ++L H GGLYDLA+GP + C
Sbjct: 5 QPVSSEIKSVKFGIYDVDDVEKISVKQIVNPVLLDNLNHPTNGGLYDLALGPYL-KNSVC 63
Query: 175 TTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLF---- 230
TC + C GH GHI LP+P + LFF + LL+ +C CH + LF
Sbjct: 64 ATCHLDERYCPGHFGHIVLPIPAYHPLFFSQMYNLLRSTCLYCHHFKLSKVKVHLFFCRL 123
Query: 231 -------INQIKLLDAGYVTQA-------------KDLEETLFNEENLRLHPAQLVQLVD 270
+N+ ++++ +T+A D E++ +++ A L+++ D
Sbjct: 124 KLLDYGLLNESEMVENVSLTEAIIKNSNGTPLEDGSDSEDSGLGHDDIAKDAATLMRIRD 183
Query: 271 SHVQSILAHGTKICDIND------YKGGEELRSAFVAQVLSRHVKRKCIFCAT------- 317
V +A + I+ +++ AF + SR ++C C +
Sbjct: 184 EFVAKSIADSRQNAHIDAQLTTLLLHERKKVVRAFYHAISSR---KQCDNCQSFSPNFRK 240
Query: 318 ---------PINAISYQ---QRKIIKS---------------FKIDKDNLDQSLDKSL-- 348
P++ + Q Q I+S + D D+ ++S + +
Sbjct: 241 EGFAKIFEIPLSGKNLQFMEQTGKIRSDVLRDTSKKHHEDEGYDGDSDSSNESEVEGIDL 300
Query: 349 ---------NKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIA 399
NKS + I + Y+ ++EV ++L+ E++ L L + +
Sbjct: 301 FEEDPNPLKNKSKSPIAHGAK--YMTSTEVRNHLRRLFVKENVVLSRLYA--HKRGKPAS 356
Query: 400 TDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQS-D 458
D+ F++++ VPP RP S E+ +N+L IL S S+ +A +K+ + +
Sbjct: 357 ADMFFLQNIAVPPTRFRPASKMGDEVHENIQNELLTRILQS-----SIQIASLSKDSTVE 411
Query: 459 LLSEALKGI-RGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQID---GLKQMLD 514
+ + +G+ R L N++ +LQ++V+ L+D+ N N ++G G+KQ+L+
Sbjct: 412 VNPDEKEGLERRSRAFELLINAFVQLQHDVNSLIDS--NRNPSSGGQSRTVPPGIKQILE 469
Query: 515 GKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRK 574
K G+ R++MMGKRVN+A RSVI+PDP + + IGVP FA LTYP PVT +N +R
Sbjct: 470 KKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTLYNFNEMRN 529
Query: 575 MVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPEGN 620
VINGP+ +PGA+ IQNEDG+++ + QR +LA +L+TP+ N
Sbjct: 530 AVINGPHKWPGASHIQNEDGTLISLMPLTIEQRTALANQLLTPQSN 575
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 60/88 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP + + IGVP FA LTYP PVT +N +R VINGP+ +PGA+ IQ
Sbjct: 486 YAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTLYNFNEMRNAVINGPHKWPGASHIQ 545
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPE 101
NEDG+++ + QR +LA +L+TP+
Sbjct: 546 NEDGTLISLMPLTIEQRTALANQLLTPQ 573
>gi|302760347|ref|XP_002963596.1| hypothetical protein SELMODRAFT_438401 [Selaginella moellendorffii]
gi|300168864|gb|EFJ35467.1| hypothetical protein SELMODRAFT_438401 [Selaginella moellendorffii]
Length = 1588
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 154/506 (30%), Positives = 245/506 (48%), Gaps = 62/506 (12%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNY 181
E + YY EV+ +SV ++ SP + LG +P GLYD A+GP +E+ D C TCG+
Sbjct: 66 EAIGFSYYQADEVRAMSVKRITSPRLLDGLGKPVPNGLYDPALGP-TEQSDVCPTCGDMQ 124
Query: 182 TKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGY 241
C GH GHIEL +PV N L +R + + K C CH F ++ K ++
Sbjct: 125 LFCPGHFGHIELVMPVFNPLLYRSLVRIFKSVCVFCHH----------FKHERKKVEDAC 174
Query: 242 VTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFV- 300
+ + ++E++ +P+ +++ + H ++ I G+ +
Sbjct: 175 IALTQIMKESVVE------NPSGGRKMLITS-----GHFIQVPAIRSEGHGKLFQQPLSS 223
Query: 301 ----AQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQII 356
A ++S H+ R A ++A + + K K DK + S+ S+ +I+
Sbjct: 224 RHMSANMVSGHIFRDQNAAAAAMDASVPESKG--KKPKADKFGKNSSIQAVGYFSAPKIL 281
Query: 357 RKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATD---IMFIRSLVVPPN 413
+ SEV LW NE + + T K D + F+ +L V PN
Sbjct: 282 --------LPSEVRKHLSALWRNEEKLCSLIWGGVGTGKSPARKDGLSLFFLEALAVTPN 333
Query: 414 NLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLN 473
RP + +EH +NKLY+ ++ KN + SDL++E+ G
Sbjct: 334 RFRPPNYVNNQLLEHPQNKLYE------------VVVEKNIQLSDLITES-----GAKSE 376
Query: 474 NKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
+ L+ W ELQ V+ L+D+ G + G++Q+L+ K G+ R NMMGKRVN
Sbjct: 377 DGLR-LWLELQNAVNELIDS----TTVAGKDRNVGIRQLLEKKQGLFRWNMMGKRVNHTC 431
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
RSVI+PDP++ ++ IG+P FA LTYP VT +N LR+ V NGPNV+PGA +++E
Sbjct: 432 RSVISPDPFIAVNEIGIPPNFAVKLTYPEKVTAYNFERLRRNVENGPNVHPGATHVEDEL 491
Query: 594 GSVVRISSSQAVQRESLAKRLITPEG 619
G V + + QR + AK L++ G
Sbjct: 492 GVRVSLEYLKDWQRVATAKTLLSTPG 517
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Query: 17 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 76
RSVI+PDP++ ++ IG+P FA LTYP VT +N LR+ V NGPNV+PGA +++E
Sbjct: 432 RSVISPDPFIAVNEIGIPPNFAVKLTYPEKVTAYNFERLRRNVENGPNVHPGATHVEDEL 491
Query: 77 GSVVRISSSQAVQRESLAKRLI-TPEDQQHRAIMKEKIITR 116
G V + + QR + AK L+ TP I KEK+I +
Sbjct: 492 GVRVSLEYLKDWQRVATAKTLLSTPGATATDTIKKEKLIGK 532
>gi|303289108|ref|XP_003063842.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454910|gb|EEH52215.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 1665
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 157/529 (29%), Positives = 247/529 (46%), Gaps = 66/529 (12%)
Query: 126 LKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCK 185
+Y +E +++SV ++ +P+ F++L + + GLYD A+GPI +RG C TC C
Sbjct: 25 FSFYDAEEARRISVKRISNPVLFDALSNPVADGLYDPALGPIDQRGS-CATCRLGAMHCP 83
Query: 186 GHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQA 245
GH GHIEL VPV N L F V LL+ +C C K + A + +++L+ G + A
Sbjct: 84 GHFGHIELAVPVYNPLTFSVVVRLLRSACLHCGKFKLAADRVAAYREKLRLIREGDLEGA 143
Query: 246 KDLE------ETLFNEENLRLHPAQLVQLVDSHVQSIL--AHGTKICDINDYKGGEELRS 297
+++ +T +R L + +HV ++ AH + D +R
Sbjct: 144 ANVDVHGVSKQTRAELNEIREMVGDLGTMDTTHVSRVIPVAHQGRRKD--------RVRW 195
Query: 298 AFVAQVLSRHVKR--------KCIFCATPINAISYQQRKIIKSFKIDKD----------- 338
A +LSR + + KC C +S + I + K
Sbjct: 196 TSHAMMLSRDLVKEFLAATPGKCENCGVCSPKVSPEGANKIYRAALTKKQIEHNAALTPS 255
Query: 339 -NLDQSLDKSLN--KSSNQIIRKREQGYVMAS----------EVEADFKKLWTNEHLFLK 385
+L++ L + L+ + RE G +A E + KKLW NE+ F+
Sbjct: 256 VDLEEELRRGLSGPDRGDDDAEPREDGEDLAGQERQVFITPIEARSMLKKLWANEYDFVS 315
Query: 386 CLIPVLDTTKELIATD--IMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGS 443
++ V + TD F+++++V P RP S EH +N +I+ + +
Sbjct: 316 -MVWVANAPSYDAKTDPARFFMQTVLVTPCRFRPPSKMNDMMFEHPQNTHLNAIIQANLT 374
Query: 444 LKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGA 503
L + + A + +R +W LQ V+ L+D+ G
Sbjct: 375 LAELFRKPPTVPEP-PEVRAQRAVR----------AWLTLQGGVNRLVDSSKAEGGEAGG 423
Query: 504 HQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVP 563
I +Q L+ K G+ R NMMGKRVN+A RSVI PDPYL IGVP FAK LT+P
Sbjct: 424 MGI---RQQLEKKQGLFRMNMMGKRVNYAARSVIMPDPYLKTSEIGVPPVFAKKLTFPEN 480
Query: 564 VTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAK 612
VT NV L+R++V NGP+++PGAN I++E G V+ + A +R ++AK
Sbjct: 481 VTAHNVELMRQLVENGPDIHPGANAIEDERGRVIHLDRFTAEKRAAIAK 529
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 56/82 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PDPYL IGVP FAK LT+P VT NV L+R++V NGP+++PGAN I+
Sbjct: 448 YAARSVIMPDPYLKTSEIGVPPVFAKKLTFPENVTAHNVELMRQLVENGPDIHPGANAIE 507
Query: 74 NEDGSVVRISSSQAVQRESLAK 95
+E G V+ + A +R ++AK
Sbjct: 508 DERGRVIHLDRFTAEKRAAIAK 529
>gi|341884897|gb|EGT40832.1| hypothetical protein CAEBREN_30438 [Caenorhabditis brenneri]
Length = 1724
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 157/525 (29%), Positives = 250/525 (47%), Gaps = 72/525 (13%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
KL+ Y E+ +LSV+K+ TF+ +GH I GGLYD +GP D C TC
Sbjct: 18 FKLRNYFPHEIDKLSVLKITQTKTFDEVGHPIAGGLYDPILGP-DNTFDQCLTCNQYERH 76
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPA--TSQLLFINQIKLLDAGY 241
C GH+GHI+L VPV N L F+ LLK SC CH++ + L + Q++ + G
Sbjct: 77 CPGHMGHIQLSVPVFNPLLFQFTFNLLKGSCVHCHRLTCKGDGVNAHLLLAQLRCFELGV 136
Query: 242 VTQAKDLEE---------TLFNEENLRLHPAQLVQLVDSHVQSI----LAHGTKICDIND 288
A DLE LF+EE+ A+ VD+ + + LA T+ +
Sbjct: 137 EHVAFDLEAILRDKLAKADLFDEED-----AKAFNDVDACIAQLANKPLAELTQFKPV-P 190
Query: 289 YKGGEELRSAFVAQVLSRHV-KR--KCIFCATPINAISYQ-QRKIIKSFKIDKDNLDQSL 344
K +L+ + L H+ KR KC C + R I+ F + + L
Sbjct: 191 TKNSVQLKKDLITGFLRSHLFKRLQKCPLCKNRNGVLRNDGSRSILLDFAGSRKKSKKPL 250
Query: 345 ---DKSLNK--SSNQIIRKREQGYVMAS------------------------------EV 369
+ N+ S+++ +K E+G +++ EV
Sbjct: 251 IIGEGGYNEESSTDEDEKKEEKGVEVSANVVDCDEGNLEMQMKSVRTGDCDKLAWRGAEV 310
Query: 370 EADFKKLWTNEHLFLKCLIPVLDTTKELIATDI------MFIRSLVVPPNNLRPLSMEQM 423
F+ L+ N+ L L P+L EL D+ +F+ ++VPP RP+ M +
Sbjct: 311 REHFRILFKNDGKLLLKLFPML--IDELNGEDMVCPLDGLFLERVLVPPKKFRPIRMFKG 368
Query: 424 PPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHEL 483
E + + +L + ++ ++ + MK + L +RG T++ ++ +++ +L
Sbjct: 369 AQYEDPQTLNLRRVLEATETISALSLMMKGDNSAKLKELIANRVRGKTIDAQIHDAYLQL 428
Query: 484 QYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYL 543
Q + + D LN I G+KQ+L+ K G+ R +MMGKRVNFA RSVITPDPYL
Sbjct: 429 QLRCNAIFDQDLNRGDRD---SIAGIKQILEKKQGLFRMHMMGKRVNFACRSVITPDPYL 485
Query: 544 NIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANM 588
+ID IG+P FAK LT+ PV +N+ +++++ GP+ +PGAN
Sbjct: 486 DIDEIGIPDIFAKKLTFTEPVNAFNMKEMKELLRKGPHQHPGANF 530
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 42/58 (72%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANM 71
F RSVITPDPYL+ID IG+P FAK LT+ PV +N+ +++++ GP+ +PGAN
Sbjct: 473 FACRSVITPDPYLDIDEIGIPDIFAKKLTFTEPVNAFNMKEMKELLRKGPHQHPGANF 530
>gi|384492991|gb|EIE83482.1| hypothetical protein RO3G_08187 [Rhizopus delemar RA 99-880]
Length = 1612
Score = 208 bits (529), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 150/525 (28%), Positives = 250/525 (47%), Gaps = 62/525 (11%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNY 181
+ + +Y E++++SV ++ +P+ F++LGH GGLYD ++GP ++ C TC ++
Sbjct: 12 DYVSFSFYEPNEIRKISVKQIVNPVLFDALGHPTKGGLYDPSLGPF-QKTQICATCSQDH 70
Query: 182 TKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGY 241
C GH GHIE+P+P N +FF + Q A S +++I +LD
Sbjct: 71 FNCPGHFGHIEIPIPAYNPMFFDNFQ----------------AQS----LDEI-VLDFKK 109
Query: 242 VTQAKDLE--ETLFNEENLRLHPAQLV----------QLVDSHVQSILAHGTKICDINDY 289
+AK+ E E E +L L A+ L D + A K+ IND
Sbjct: 110 ANEAKEDETLEDRMEESSLSLSTAEEYIDYVDNFMKDALADEEARKYAAKDYKVTVINDV 169
Query: 290 KGGEELRSAFVAQVLSRHV--KRKCIFCATPINAISYQQRK--IIKSFKIDKDNLDQSLD 345
+ V + +H +KC C + IS R+ K F++ + DQ++
Sbjct: 170 RKN-------VMRNFMKHCIHSKKCGNC----HGISPPVRRDGAAKLFQLALNKKDQAVM 218
Query: 346 KSLNKSSNQI--IRKREQG------YVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKEL 397
+ +S+ ++ G Y + +V+A F+K L P + + +
Sbjct: 219 DRMKESTGSFGELKGFANGQRFLTPYDVRKDVQALFEKEGEITTLLFGARDPRVPSFIKK 278
Query: 398 IATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQS 457
+ FI L V P RP S+ E +N+L +IL ++ ++ Q
Sbjct: 279 ATYHMFFIEVLAVAPTRFRPPSVMGEKTFESPQNELLSAILKGSHLVRDFSEELQAASQE 338
Query: 458 DLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQI-DGLKQMLDGK 516
E + + + N+ +S LQ+ V+ +D+ N + + G++Q+L+ K
Sbjct: 339 ----EPVDKKKLEITRNRFVDSIINLQHAVNSFIDSTKNPTQVAQGQNLPAGIRQVLEKK 394
Query: 517 TGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMV 576
G+ R++MMGKRVN+A RSVI+PDP++ IG+P FA LTYP PVTP N+ +R+ V
Sbjct: 395 EGLFRKHMMGKRVNYAARSVISPDPFIETSEIGIPPVFATKLTYPEPVTPHNIKEMRQAV 454
Query: 577 INGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPEGNY 621
INGPN +PGA +QNED S+ + R +LA L+ P+ ++
Sbjct: 455 INGPNKWPGATHVQNEDQSIDVLGDLSIESRIALANSLLAPQSSH 499
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 56/88 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP++ IG+P FA LTYP PVTP N+ +R+ VINGPN +PGA +Q
Sbjct: 409 YAARSVISPDPFIETSEIGIPPVFATKLTYPEPVTPHNIKEMRQAVINGPNKWPGATHVQ 468
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPE 101
NED S+ + R +LA L+ P+
Sbjct: 469 NEDQSIDVLGDLSIESRIALANSLLAPQ 496
>gi|255087754|ref|XP_002505800.1| predicted protein [Micromonas sp. RCC299]
gi|226521070|gb|ACO67058.1| predicted protein [Micromonas sp. RCC299]
Length = 1616
Score = 208 bits (529), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 158/550 (28%), Positives = 253/550 (46%), Gaps = 84/550 (15%)
Query: 126 LKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCK 185
+Y +E +++SV ++ +P+ F++L + + GLYD A+GPI ++G C TC + C
Sbjct: 6 FSFYDAEEARRISVKRISNPVLFDALNNPVQDGLYDPALGPIDKKGS-CATCRLSAMHCP 64
Query: 186 GHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQA 245
GH GHIEL VPV N L F V LL+ C CH+ + A + +++L+ AG + A
Sbjct: 65 GHFGHIELAVPVYNPLTFGTVVRLLRGMCLHCHRFKMGADRVAAYSRKMQLIRAGDLNAA 124
Query: 246 KDLEETLFNEENLRLHPAQL--------VQLVDSHVQSILAHGTKICDINDYKGGEELRS 297
++ T+ + +R A+L V VD+ ++ + + D L
Sbjct: 125 AEIS-TVGVSKQVREAIAELEEDGLGRDVADVDTTADRVVWTTNSMVESRD------LIR 177
Query: 298 AFVAQVLSRHVKRKCIFCATPIN----------AISYQQRKIIKSFKIDKDN-------- 339
F+A V ++ C C+ + A++ +QR+ S ID D
Sbjct: 178 NFLASVPAKC--ENCGCCSPKVTPEGANKIYRQALTNKQREANASLGIDLDGELADSDDD 235
Query: 340 ----------------------LDQSLDKSLNKSSNQIIRKREQGYVMASEVEADFKKLW 377
++ +K + N + +Q ++ E A K+LW
Sbjct: 236 GSGSDDSSDSSVSDSDSDSGGSDEKKSEKKKVRVDNATQQAGKQVFITPIEARALLKRLW 295
Query: 378 TNEHLFLKCLIPVLDTTKELI--ATDIM---------FIRSLVVPPNNLRPLSMEQMPPV 426
E+ F + T L A D + F+++++V P LRP S
Sbjct: 296 AREYDFCSMVWAAAPPTHGLTKGAKDPIVNRSDPARFFMQTVLVTPCKLRPPSRMGDMMF 355
Query: 427 EHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYN 486
EH +N +I+ + +L + + A + +R +W LQ
Sbjct: 356 EHPQNTHLNAIIQANLTLAELFRKPPTVPEP-PEVRAQRAVR----------AWLTLQSG 404
Query: 487 VDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNID 546
V+ L+D+ + G G++Q L+ K G+ R NMMGKRVN+A RSVI PDPYL
Sbjct: 405 VNKLIDSSREGGEAGGP----GIRQQLEKKQGLFRMNMMGKRVNYAARSVIMPDPYLRTS 460
Query: 547 SIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQ 606
IGVP FAK LT+P VT NV L+RK+V NGP ++PGAN I++E G V+ + A +
Sbjct: 461 EIGVPPVFAKKLTFPEHVTEHNVDLMRKLVENGPEIHPGANAIEDERGRVIHLDRFTAEK 520
Query: 607 RESLAKRLIT 616
R ++AK L+
Sbjct: 521 RAAIAKTLLA 530
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 57/86 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PDPYL IGVP FAK LT+P VT NV L+RK+V NGP ++PGAN I+
Sbjct: 445 YAARSVIMPDPYLRTSEIGVPPVFAKKLTFPEHVTEHNVDLMRKLVENGPEIHPGANAIE 504
Query: 74 NEDGSVVRISSSQAVQRESLAKRLIT 99
+E G V+ + A +R ++AK L+
Sbjct: 505 DERGRVIHLDRFTAEKRAAIAKTLLA 530
>gi|4995|emb|CAA32887.1| unnamed protein product [Schizosaccharomyces pombe]
Length = 1689
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 167/586 (28%), Positives = 285/586 (48%), Gaps = 97/586 (16%)
Query: 117 QEVVPEILKLKY--YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPC 174
Q V EI +K+ Y +V+++SV ++ +P+ ++L H GGLYDLA+GP + C
Sbjct: 5 QPVSSEIKSVKFGIYDVDDVEKISVKQIVNPVLLDNLNHPTNGGLYDLALGPYL-KNSVC 63
Query: 175 TTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLF---- 230
TC C GH GHI LP P + LFF + LL+ +C CH + LF
Sbjct: 64 ATCHLAERYCPGHFGHIVLPSPAYHPLFFSQMYNLLRSTCLYCHHFKLSKVKVHLFFCRL 123
Query: 231 -------INQIKLLDAGYVTQA-------------KDLEETLFNEENLRLHPAQLVQLVD 270
+N+ ++++ +T+A D E++ +++ A L+++ D
Sbjct: 124 KLLDYGLLNESEMVENVSLTEAIIKNSNGTPLEDGSDSEDSGLGHDDIAKDAATLMRIRD 183
Query: 271 SHVQSILAHGTKICDIND------YKGGEELRSAFVAQVLSRHVKRKCIFCAT------- 317
V +A + I+ +++ AF + SR ++C C +
Sbjct: 184 EFVAKSIADSRQNAHIDAQLTTLLLHERKKVVRAFYHAISSR---KQCDNCQSFSPNFRK 240
Query: 318 ---------PINAISYQ---QRKIIKS---------------FKIDKDNLDQSLDKSL-- 348
P++ + Q Q I+S + D D+ ++S + +
Sbjct: 241 EGFAKIFEIPLSGKNLQFMEQTGKIRSDVLRDTSKKHHEDEGYDGDSDSSNESEVEGIDL 300
Query: 349 ---------NKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIA 399
NKS + I + Y+ ++EV ++L+ E++ L L + +
Sbjct: 301 FEEDPNPLKNKSKSPIAHGAK--YMTSTEVRNHLRRLFVKENVVLSRLYA--HKRGKPAS 356
Query: 400 TDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQS-D 458
D+ F++++ VPP RP S E+ +N+L IL S S+ +A +K+ + +
Sbjct: 357 ADMFFLQNIAVPPTRFRPASKMGDEVHENIQNELLTRILQS-----SIQIASLSKDSTVE 411
Query: 459 LLSEALKGI-RGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQID---GLKQMLD 514
+ + +G+ R L N++ +LQ++V+ L+D+ N N ++G G+KQ+L+
Sbjct: 412 VNPDEKEGLERRSRAFELLINAFVQLQHDVNSLIDS--NRNPSSGGQSRTVPPGIKQILE 469
Query: 515 GKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRK 574
K G+ R++MMGKRVN+A RSVI+PDP + + IGVP FA LTYP PVT +N +R
Sbjct: 470 KKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTLYNFNEMRN 529
Query: 575 MVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPEGN 620
VINGP+ +PGA+ IQNEDG+++ + QR +LA +L+TP+ N
Sbjct: 530 AVINGPHKWPGASHIQNEDGTLISLMPLTIEQRTALANQLLTPQSN 575
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 60/88 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP + + IGVP FA LTYP PVT +N +R VINGP+ +PGA+ IQ
Sbjct: 486 YAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTLYNFNEMRNAVINGPHKWPGASHIQ 545
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPE 101
NEDG+++ + QR +LA +L+TP+
Sbjct: 546 NEDGTLISLMPLTIEQRTALANQLLTPQ 573
>gi|330844422|ref|XP_003294125.1| RNA polymerase I, largest subunit [Dictyostelium purpureum]
gi|325075464|gb|EGC29348.1| RNA polymerase I, largest subunit [Dictyostelium purpureum]
Length = 1598
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 170/559 (30%), Positives = 259/559 (46%), Gaps = 90/559 (16%)
Query: 104 QHRAIMKEKIITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLA 163
Q+ A++KE+I + ++YT ++++LSV ++ +F+ LG IPGGL+D A
Sbjct: 4 QNSALIKEEITG--------VSFQFYTSDDIRKLSVKQMVEVESFDMLGGPIPGGLHDPA 55
Query: 164 MGPI--SERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKIN 221
+GP SER C+TC ++ +C GH GHIEL +P N + F+ + LLK CF CH
Sbjct: 56 LGPTGPSER---CSTCSLDFIECPGHFGHIELAIPCYNPVCFQTIFKLLKNKCFNCHHFK 112
Query: 222 IPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSIL---- 277
+ F ++ LL G V AK+L E N+ L + D+ +S L
Sbjct: 113 HGSKVINQFTEELNLLLRGNVVAAKNLREA-----NVLLRGYDEKKDKDTKRESKLNGKK 167
Query: 278 -------------------------AHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKC 312
G K+ D + E+ F A C
Sbjct: 168 NKEEEESDEEDEQDKFKNGVFSASEISGDKVTHFEDIR--REIFREFFATFSG--YATPC 223
Query: 313 IFCATPINAISYQQRKIIKSF------KIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMA 366
C T + K F K K N + S + + NQ E G A
Sbjct: 224 NNCGTFSPRLRNGDASKSKLFVMPLYEKYKKKNSETSKPTNFSSVENQ----SEHGTWFA 279
Query: 367 S-EVEADFKKLWTNEH----LFLKCLIPVLDTT----KELIATDIMFIRSLVVPPNNLRP 417
EV KKL+ E L L L+PV + ++ D +F+R V P+ RP
Sbjct: 280 PWEVLDHLKKLFNEEKEILDLLLGHLVPVSGSKGREFTKVSNVDSLFMRVFPVTPSRYRP 339
Query: 418 LSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQ 477
+ EH +N Y+ +L + ++S I EQ G+ L
Sbjct: 340 PNFVNGRRSEHPQNSHYKGMLKANKMIRSSI------EQ------------GEGKAKYLV 381
Query: 478 NSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVI 537
NS +LQ +V+ + D + + T +G+KQ+L+ K G+ R++MMGKRVN+A R+VI
Sbjct: 382 NSVCDLQMHVNNMYDNSKSASTTNDV--ANGIKQILEKKEGLFRKHMMGKRVNYAARTVI 439
Query: 538 TPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
+PD L + +GVP FAKTLT+P PVT +N L + VINGP+ YPGAN I++E+G ++
Sbjct: 440 SPDISLETNEMGVPQYFAKTLTFPQPVTSFNYNQLAQAVINGPDTYPGANFIEDENGHLI 499
Query: 598 RISSSQAVQRESLAKRLIT 616
++ +R +L+K L+T
Sbjct: 500 NLAKEPMEKRVALSKTLLT 518
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 63/98 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ R+VI+PD L + +GVP FAKTLT+P PVT +N L + VINGP+ YPGAN I+
Sbjct: 433 YAARTVISPDISLETNEMGVPQYFAKTLTFPQPVTSFNYNQLAQAVINGPDTYPGANFIE 492
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKE 111
+E+G ++ ++ +R +L+K L+T R + K+
Sbjct: 493 DENGHLINLAKEPMEKRVALSKTLLTNHPHAPRGVNKK 530
>gi|66819721|ref|XP_643519.1| RNA polymerase I, largest subunit [Dictyostelium discoideum AX4]
gi|74860727|sp|Q86H36.1|RPA1_DICDI RecName: Full=DNA-directed RNA polymerase I subunit rpa1; Short=RNA
polymerase I subunit A1; AltName: Full=DNA-directed RNA
polymerase I largest subunit; AltName: Full=DNA-directed
RNA polymerase I subunit A
gi|60471674|gb|EAL69630.1| RNA polymerase I, largest subunit [Dictyostelium discoideum AX4]
Length = 1615
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 169/556 (30%), Positives = 263/556 (47%), Gaps = 77/556 (13%)
Query: 109 MKEKIITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPIS 168
M + + ++E+ + ++YT +V++LSV ++ +F+ LG +PGGL+D A+GP
Sbjct: 3 MSQSALIKEEISS--VSFQFYTSDDVRKLSVKQIVEIESFDMLGGPVPGGLHDPALGPTG 60
Query: 169 ERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCH--KINIPATS 226
+ C TC ++ +C GH GHIEL +P N + F+ + LLK CF CH K P +
Sbjct: 61 P-AERCATCSLDFIECPGHFGHIELAIPCYNPVSFQTIFKLLKNKCFHCHHFKHGKPIIN 119
Query: 227 QLLFINQIKLLDAGYVTQAKDLEETLF-------------NEENLRLHPAQLVQLVDSHV 273
Q FI ++ LL G V +A++L E NEE + +
Sbjct: 120 Q--FIEELTLLFKGDVVKARNLRERNVLLRGYEEKKKGKSNEEGEEVMESDESDSDKMDT 177
Query: 274 QSILAHGTKICD--IND---YKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRK 328
+G ICD N Y G F +V + N +Y R
Sbjct: 178 DENKTNGKIICDGVFNAKEIYSGKATHIEDFKREVFKEFFGSFSGYAIPCGNCGAYSPR- 236
Query: 329 IIKSFKIDKDNL------DQSLDKS----LNKSSNQIIRKREQGYVMAS-EVEADFKKLW 377
+++ K L D+ K+ L + + + + E G A EV + KKL+
Sbjct: 237 -LRNGDASKSKLFIMPLHDKYATKNSAIKLPTNFSSVKEQTEHGTWFAPWEVLDNMKKLF 295
Query: 378 TNEH----LFLKCLIPVLDT------------TKELIATDIMFIRSLVVPPNNLRPLSME 421
NE + L L+P++ TKE D +F+R V P RP +
Sbjct: 296 ENEKEILDMLLGHLVPIVTNKGGAKKNVGRQFTKE-SNVDSLFMRVFPVTPARYRPPNFV 354
Query: 422 QMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWH 481
EH +N Y+ ++ S ++ I A + K + L NS
Sbjct: 355 NGRRSEHPQNSHYKGMVKSNKMIRQSIDAGEGKAKF------------------LVNSVC 396
Query: 482 ELQYNVDLLMD-AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPD 540
+LQ +V+ + D +K N N A +G+KQ+L+ K G+ R++MMGKRVN+A R+VI+PD
Sbjct: 397 DLQMHVNNMYDNSKSNSNTNEVA---NGIKQILEKKEGLFRKHMMGKRVNYAARTVISPD 453
Query: 541 PYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRIS 600
L + +GVP FAKTLT+P PVT +N L + VINGP YPGAN I++E+G ++ +S
Sbjct: 454 ISLETNEMGVPQYFAKTLTFPQPVTSFNYNQLAQAVINGPEQYPGANFIEDENGHLINLS 513
Query: 601 SSQAVQRESLAKRLIT 616
+R +L+K L+T
Sbjct: 514 KESQEKRIALSKTLLT 529
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 62/98 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ R+VI+PD L + +GVP FAKTLT+P PVT +N L + VINGP YPGAN I+
Sbjct: 444 YAARTVISPDISLETNEMGVPQYFAKTLTFPQPVTSFNYNQLAQAVINGPEQYPGANFIE 503
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKE 111
+E+G ++ +S +R +L+K L+T R + K+
Sbjct: 504 DENGHLINLSKESQEKRIALSKTLLTSHPHAPRGVNKK 541
>gi|356537377|ref|XP_003537204.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Glycine
max]
Length = 1653
Score = 205 bits (521), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 153/509 (30%), Positives = 236/509 (46%), Gaps = 75/509 (14%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNY 181
E + + TD E+++ S VK+ SPI + L H +P GLYD A+GP ++ C +CG
Sbjct: 13 EAVAFSFLTDDEIRRSSRVKITSPILVDFLLHPVPDGLYDAALGPFDDKS-LCKSCGQTS 71
Query: 182 TKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGY 241
C GH GHIEL PV N L F + +L+ +CF CH P+ + +Q++L+ G
Sbjct: 72 KHCPGHFGHIELVSPVYNPLMFNILSNILQRTCFTCHHFRAPSKEVDIRTSQLELIMKGD 131
Query: 242 VTQAKDLEETLFNEENLRLHPAQLVQLVD---SHVQSILAHGTKICDINDYKGGEELRSA 298
+ +AK LE + + +P + + D S S G + + LR
Sbjct: 132 IIRAKRLESIIPGKSVDSFNPDESIHPGDGDESQCYSAEQLGENWTSLQFSEAMSVLRKL 191
Query: 299 FVAQVLSRHVKRKCIFCATP-------------INAISYQQRK--IIKSFKIDKDNLDQS 343
+ +KC C +N +S + + I+S + + N D S
Sbjct: 192 LTKK------HKKCQKCGAKNPKISKPTFGWFHMNVLSADETRADTIRSVESETTNDDIS 245
Query: 344 L---------DKSLNKSSNQIIRKREQ------------GYVMASEVEADFKKLWTNEHL 382
L D + ++ + RK+E+ G ++ S+V+ + LW NE
Sbjct: 246 LGGGDTTDVEDITSAGTAKRDKRKKEKLSYKLAEQNKLSGSLLPSQVKGILELLWENEAR 305
Query: 383 FLKCLIPVLDTT-KELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSC 441
+ + D + + F+ ++ VPP RP + +EH + L +L
Sbjct: 306 LCSYINDIQDQGFGKKAGHSMFFLENIFVPPIKFRPPTKGGDNVMEHPQTVLLTKVLQCN 365
Query: 442 GSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKT- 500
SL A NK +K+ + W +LQ +V++L D NKT
Sbjct: 366 ISLGD---AHLNKSDP----------------SKVLSRWMDLQQSVNMLFD-----NKTA 401
Query: 501 TGAHQID---GLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKT 557
+G + D G+ Q+L+ K G+ RQ MMGKRVNFA RSVI+PDPYL ++ IG+P FA
Sbjct: 402 SGESKRDVATGICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALR 461
Query: 558 LTYPVPVTPWNVTLLRKMVINGPNVYPGA 586
L+YP VTPWNV LR ++NGP +PGA
Sbjct: 462 LSYPERVTPWNVVKLRNAILNGPESHPGA 490
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 40/56 (71%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGA 69
F RSVI+PDPYL ++ IG+P FA L+YP VTPWNV LR ++NGP +PGA
Sbjct: 435 FACRSVISPDPYLAVNEIGIPPYFALRLSYPERVTPWNVVKLRNAILNGPESHPGA 490
>gi|308457540|ref|XP_003091144.1| hypothetical protein CRE_15786 [Caenorhabditis remanei]
gi|308258145|gb|EFP02098.1| hypothetical protein CRE_15786 [Caenorhabditis remanei]
Length = 1245
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 161/566 (28%), Positives = 260/566 (45%), Gaps = 85/566 (15%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSL---------------GHTIPGGLYDLAMGPIS 168
KL+ Y E+ +LSV+KV TF+ + GH I GGLYD +GP
Sbjct: 18 FKLRSYFPHEIDKLSVLKVTQTKTFDEVTITIKNLMTNLFFQVGHPIAGGLYDPILGP-D 76
Query: 169 ERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIP--ATS 226
D C TC C GH+GHI+L VPV N L F+ LLK SC CH++ + S
Sbjct: 77 NNFDMCLTCNQYERHCPGHMGHIQLAVPVFNPLLFQFTYNLLKGSCVHCHRLTCKGDSGS 136
Query: 227 QLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAH--GTKIC 284
+ + Q++ D G A DLE L E ++ + +D+ + +A +
Sbjct: 137 ARILLAQLRCFDLGVEHVALDLESIL--REKIKNCDLLNDEDIDTTMDVCIAQLANKPLS 194
Query: 285 DINDYKG-----GEELRSAFVAQVLSRHV-KR--KCIFCA-------------------- 316
++ +K G +L+ + + L H+ KR KC C
Sbjct: 195 ELTQFKSIPTKNGVQLKKDIITEFLRNHLFKRLQKCPLCKNRNGTLRNDGARSILIDFTG 254
Query: 317 --------TPINAISY----------QQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRK 358
+ I I Y ++K K +++ +D LD+ + + +R
Sbjct: 255 ARKKSKKMSIIGDIGYNEESSPSTDEDEKKEDKHVEVNASVVD--LDEGSLELQMKNVRS 312
Query: 359 REQGYVM--ASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDI------MFIRSLVV 410
E + +EV F+ ++ N+ L L P+L EL D+ +F+ ++V
Sbjct: 313 GECDKLAWRGAEVREHFRMMFKNDGNLLLKLFPML--VDELNGGDMICPLDGLFLERILV 370
Query: 411 PPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGD 470
PP RP+ M + E + + +L + ++ ++ + MK + + L +RG
Sbjct: 371 PPKKFRPIRMFKGAQYEDPQTLNLRKVLEATETISAISLIMKGDKSAQLKELVANRVRGK 430
Query: 471 TLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVN 530
T+N ++ +++ +LQ + + D LN I G+KQ+L+ K G+ R +MMGKRVN
Sbjct: 431 TINAQMHDAYLQLQLRANAIFDQDLNRGDRD---SIAGIKQILEKKQGLFRMHMMGKRVN 487
Query: 531 FAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 590
FA RSVITPDPYL+ID IG+P FAK LT+ PV +N+ +++++ GP+ +PGAN
Sbjct: 488 FACRSVITPDPYLDIDEIGIPDIFAKKLTFTEPVNAFNMKEMKELLKKGPHQHPGANFFV 547
Query: 591 NEDGSVVRISS--SQAVQRESLAKRL 614
G + + +R LAK L
Sbjct: 548 EPSGKKTMLGDKPDEKKRRYHLAKTL 573
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVITPDPYL+ID IG+P FAK LT+ PV +N+ +++++ GP+ +PGAN
Sbjct: 488 FACRSVITPDPYLDIDEIGIPDIFAKKLTFTEPVNAFNMKEMKELLKKGPHQHPGANFFV 547
Query: 74 NEDGSVVRISS--SQAVQRESLAKRL 97
G + + +R LAK L
Sbjct: 548 EPSGKKTMLGDKPDEKKRRYHLAKTL 573
>gi|302799457|ref|XP_002981487.1| hypothetical protein SELMODRAFT_233747 [Selaginella moellendorffii]
gi|300150653|gb|EFJ17302.1| hypothetical protein SELMODRAFT_233747 [Selaginella moellendorffii]
Length = 1578
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 161/537 (29%), Positives = 248/537 (46%), Gaps = 81/537 (15%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNY 181
E + YY EV+ +SV ++ SP + LG +P GLYD A+GP +E+ D C TCG+
Sbjct: 9 EAIGFSYYQADEVRAMSVKRITSPRLLDGLGKPVPNGLYDPALGP-TEQSDVCPTCGDMQ 67
Query: 182 TKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKIN---------IPATSQLLFIN 232
C GH GHIEL +PV N L +R + + K C CH A +Q++ +
Sbjct: 68 LFCPGHFGHIELVMPVFNPLLYRSLVRIFKSVCVFCHHFKHERKKVEDACIALTQIMKES 127
Query: 233 QIK--------LLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHG-TKI 283
++ L+ +G+ Q K + E F P V ++ + G K+
Sbjct: 128 VVENPSGGRKMLITSGHFIQVKKIIEDFFK------LPRTKCSSCGGQVPALRSEGHGKL 181
Query: 284 CDINDYKGGEELRSAFV-AQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQ 342
+ L S + A ++S H+ R A ++A + + K K DK +
Sbjct: 182 FQ-------QPLSSRHMSANMVSGHIFRDQNAAAAAMDASVPESKG--KRPKADKFAKNS 232
Query: 343 SLDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTK-----EL 397
S+ S+ +I+ + SEV LW NE + + T K
Sbjct: 233 SIQAVGYFSAPKIL--------LPSEVRKHLSALWRNEEKLCSLIWGGVGTGKSPSPARK 284
Query: 398 IATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQS 457
+ F+ +L V PN RP + +EH +NKLY+ ++ KN + S
Sbjct: 285 DGLSLFFLEALAVTPNRFRPPNYVNNQLLEHPQNKLYE------------VVVEKNIQLS 332
Query: 458 DLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNIN---------------KTTG 502
DL++E+ G + L+ W ELQ V+ L+D+ I G
Sbjct: 333 DLITES-----GAKSEDGLR-LWLELQNAVNELIDSTTGIFVSMMSYLQSFRFLCVAVAG 386
Query: 503 AHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPV 562
+ G++Q+L+ K G+ R NMMGKRVN RSVI+PDP++ ++ IG+P FA LTYP
Sbjct: 387 KDRNVGIRQLLEKKQGLFRWNMMGKRVNHTCRSVISPDPFIAVNEIGIPPNFAVKLTYPE 446
Query: 563 PVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPEG 619
VT +N LR+ V NGPNV+PGA +++E G V + + QR + AK L++ G
Sbjct: 447 KVTAYNFERLRRNVENGPNVHPGATHVEDELGVRVSLEYLKDWQRVATAKTLLSTPG 503
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Query: 17 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 76
RSVI+PDP++ ++ IG+P FA LTYP VT +N LR+ V NGPNV+PGA +++E
Sbjct: 418 RSVISPDPFIAVNEIGIPPNFAVKLTYPEKVTAYNFERLRRNVENGPNVHPGATHVEDEL 477
Query: 77 GSVVRISSSQAVQRESLAKRLI-TPEDQQHRAIMKEKIITR 116
G V + + QR + AK L+ TP I KEK+I +
Sbjct: 478 GVRVSLEYLKDWQRVATAKTLLSTPGATATDTIKKEKLIGK 518
>gi|51090906|dbj|BAD35511.1| putative RNA polymerase A(I) large subunit [Oryza sativa Japonica
Group]
Length = 1748
Score = 202 bits (514), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 150/551 (27%), Positives = 258/551 (46%), Gaps = 89/551 (16%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
+ +Y D E+K++SV ++ ++ +PGGL D AMGP ++ D C +CG +
Sbjct: 16 IHFSFYNDDEIKRISVKQITKSDRVDAKNCPVPGGLLDPAMGPTNDT-DTCKSCGQQSIR 74
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFIN--------QIK 235
C GH GHIEL P+ N L F ++ LL+++CF CHK + F +++
Sbjct: 75 CPGHFGHIELAKPLFNPLLFMSLKNLLQVTCFHCHKFRLNKEQHSRFCRITKIFDFLELE 134
Query: 236 LLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDI-NDYKGGEE 294
LL G + AK NL +++ D ++ + + N +
Sbjct: 135 LLVRGDIAHAK----------NLEDLGGKVLSKEDDETEATSGDKSARSERENKTWTSIQ 184
Query: 295 LRSAF-VAQVLSRHVKRKCIFCA--TPI--NAI----------SYQQRKIIKSFKIDKDN 339
L+ A + L + ++KC C PI N I S + I + K+ D
Sbjct: 185 LKEALSIFSKLMKKRQKKCAHCEKKNPIIKNPIYGWLIKDTTSSSVRANAIANAKLSGDG 244
Query: 340 ------------LDQSLD-------KSLNKSS-------NQIIRKREQGYVMASEVEADF 373
LD+ L +S N++ +++ + +++ +EVE+
Sbjct: 245 HVNDSRETGVSGLDEELTSPGTLSRRSTNETRRISDDTIKEMVASSGKKHLLTTEVESIL 304
Query: 374 KKLWTNEHLFLKCLIP----VLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHS 429
K LW E F L L +++ ++ F+++L+V PN RP + +EH
Sbjct: 305 KDLWKKEARFCMLLCDFQQNTLSVSEKRRGYEMFFLKNLLVAPNRFRPSISSSLGIMEHP 364
Query: 430 RNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDL 489
+N L + S +L+ I A + E + W +LQ NV++
Sbjct: 365 QNVLLSKVQESNLALQQSIAASNHME--------------------VLRRWMDLQRNVNV 404
Query: 490 LMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIG 549
L D+ ++K +G++Q+L+ K G++RQ MMGKRVN+A RSVI+PDPYL ++ IG
Sbjct: 405 LYDSSKGLSKN--EKNANGIRQLLEKKEGILRQKMMGKRVNYACRSVISPDPYLAVNEIG 462
Query: 550 VPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRES 609
+P FA LTYP VTPWN L++ + NG +++PGA ++ + ++ ++ ++ +R +
Sbjct: 463 IPPVFATRLTYPEKVTPWNARKLQEAINNGADIHPGATHYRD-NNNMYKLQAAPP-KRRA 520
Query: 610 LAKRLITPEGN 620
+AK L G+
Sbjct: 521 IAKMLPASRGS 531
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 39/53 (73%)
Query: 17 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGA 69
RSVI+PDPYL ++ IG+P FA LTYP VTPWN L++ + NG +++PGA
Sbjct: 447 RSVISPDPYLAVNEIGIPPVFATRLTYPEKVTPWNARKLQEAINNGADIHPGA 499
>gi|449437932|ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Cucumis
sativus]
Length = 1650
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 151/492 (30%), Positives = 230/492 (46%), Gaps = 55/492 (11%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNY 181
+++ + T++EV++ SVVKV +PI + +G + GGLYD AMG + E C +CG
Sbjct: 13 KVVTFSFMTNEEVRKQSVVKVTAPILLDGMGRPVSGGLYDPAMGSLDET-TLCKSCGQRP 71
Query: 182 TKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGY 241
C GH GHI+L PV N L F + L+ +CF CH + ++L+ G
Sbjct: 72 FYCPGHCGHIDLVSPVYNPLLFVILHNFLRCTCFSCHHFRAGESMVENCKTLLELILDGE 131
Query: 242 VTQAKDLEE-------------TLFNEENLRLHPAQLVQLVDSHVQSILAH-------GT 281
+ +AK+LEE +++ E P L S S++
Sbjct: 132 IAKAKELEEEWMNSKSRTKSSHSMYTYERKNGQPETWTSLQFSEAISVVTKFLKPKQSNC 191
Query: 282 KICDINDYKGGEELRSAFVAQVLSRHVKR-KCIFCATPINAISYQQRKIIKSFKIDKDNL 340
K C K + F + L+ KR I + P++ S + + S + +
Sbjct: 192 KYCGAKSPKITKPTFGWFHMKGLAGVQKRANAIRRSKPVSVSSGAEG--VSSLEEETTTE 249
Query: 341 DQSLDKSLNKSSNQIIRKR--EQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELI 398
D S ++ ++ G+++ SEV+ K+LW NE L + +
Sbjct: 250 ATVED--FEDVSPEVFMQKNFSSGHLLPSEVKDILKRLWKNEALLCSFISDISQQGHGNK 307
Query: 399 ATDIMF-IRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQS 457
A MF + S++VPP RP + +EH + L +L S SL + NK +
Sbjct: 308 AGHSMFFLESVLVPPIKFRPPAKGGDSVMEHPQTVLLNKVLQSNISLGN---GHANKSE- 363
Query: 458 DLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQID---GLKQMLD 514
++K+ W +LQ ++++L D+K G + D G+ Q+L+
Sbjct: 364 ---------------HSKIVRLWMDLQQSINILFDSK----SAAGPGKNDASLGICQLLE 404
Query: 515 GKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRK 574
K GM RQ MMGKRVNFA RSVI+PDPYL ++ IG+P FA LTYP VT WNV LR
Sbjct: 405 KKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRN 464
Query: 575 MVINGPNVYPGA 586
+INGP +PGA
Sbjct: 465 AIINGPETHPGA 476
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 39/56 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGA 69
F RSVI+PDPYL ++ IG+P FA LTYP VT WNV LR +INGP +PGA
Sbjct: 421 FACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGA 476
>gi|449517429|ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I
subunit RPA1-like [Cucumis sativus]
Length = 1652
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 151/492 (30%), Positives = 230/492 (46%), Gaps = 55/492 (11%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNY 181
+++ + T++EV++ SVVKV +PI + +G + GGLYD AMG + E C +CG
Sbjct: 19 KVVTFSFMTNEEVRKQSVVKVTAPILLDGMGRPVSGGLYDPAMGSLDET-TLCKSCGQRP 77
Query: 182 TKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGY 241
C GH GHI+L PV N L F + L+ +CF CH + ++L+ G
Sbjct: 78 FYCPGHCGHIDLVSPVYNPLLFVILHNFLRCTCFSCHHFRAGESMVENCKTLLELILDGE 137
Query: 242 VTQAKDLEE-------------TLFNEENLRLHPAQLVQLVDSHVQSILAH-------GT 281
+ +AK+LEE +++ E P L S S++
Sbjct: 138 IAKAKELEEEWMNSKSRTKSSHSMYTYERKNGQPETWTSLQFSEAISVVTKFLKPKQSNC 197
Query: 282 KICDINDYKGGEELRSAFVAQVLSRHVKRK-CIFCATPINAISYQQRKIIKSFKIDKDNL 340
K C K + F + L+ KR I + P++ S + + S + +
Sbjct: 198 KYCGAKSPKITKPTFGWFHMKGLAGVQKRANAIRRSKPVSVSSGAEG--VSSLEEETTTE 255
Query: 341 DQSLDKSLNKSSNQIIRKR--EQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELI 398
D S ++ ++ G+++ SEV+ K+LW NE L + +
Sbjct: 256 ATVED--FEDVSPEVFMQKNFSSGHLLPSEVKDILKRLWKNEALLCSFISDISQQGHGNK 313
Query: 399 ATDIMF-IRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQS 457
A MF + S++VPP RP + +EH + L +L S SL + NK +
Sbjct: 314 AGHSMFFLESVLVPPIKFRPPAKGGDSVMEHPQTVLLNKVLQSNISLGN---GHANKSE- 369
Query: 458 DLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQID---GLKQMLD 514
++K+ W +LQ ++++L D+K G + D G+ Q+L+
Sbjct: 370 ---------------HSKIVRLWMDLQQSINILFDSK----SAAGPGKNDASLGICQLLE 410
Query: 515 GKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRK 574
K GM RQ MMGKRVNFA RSVI+PDPYL ++ IG+P FA LTYP VT WNV LR
Sbjct: 411 KKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRN 470
Query: 575 MVINGPNVYPGA 586
+INGP +PGA
Sbjct: 471 AIINGPETHPGA 482
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 39/56 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGA 69
F RSVI+PDPYL ++ IG+P FA LTYP VT WNV LR +INGP +PGA
Sbjct: 427 FACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGA 482
>gi|387596656|gb|EIJ94277.1| RNA polymerase 2 [Nematocida parisii ERTm1]
Length = 1428
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 139/498 (27%), Positives = 250/498 (50%), Gaps = 61/498 (12%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
L ++ +T QE+K SV+KV + ++ +GH++ GGL+D +G + + G PC +C Y +
Sbjct: 14 LNMQMFTPQEIKNESVLKVIDSMLYDDMGHSVVGGLHDSRLGAM-DSGSPCGSCNLGYNR 72
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVT 243
C GH GHI+LP+PV N + + + +LK +C +C++ + + QIKL GY
Sbjct: 73 CLGHFGHIDLPLPVYNPMTYDVLTKVLKQACTVCYRFRMGKDESEGYTAQIKLARYGYEI 132
Query: 244 QAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQV 303
+A + + L ++++ + V +++ + GT + + +R+ F
Sbjct: 133 EAAQVGDLL---KDMKYAEVKEV------LKNTITEGTAQKEDSVETMTHAIRNRFFGLQ 183
Query: 304 LSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGY 363
+ C++C + I+ +I+ I+K+ + +K +I++
Sbjct: 184 -----NKACMWCGSSERKITSGSLRIL----IEKE--------AQSKEGPSVIKEE---L 223
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIM----FIRSLVVPPNNLRPLS 419
++ E +KL NE L L P + +++ T+ + FI ++V PN LRP++
Sbjct: 224 LLPIEAVQMVQKLTQNEEGLLGELFPSMH--RKVQGTNFLLPMFFIEVVLVTPNQLRPMN 281
Query: 420 -MEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQN 478
+ V + R YQ+I+ C + +L + K + + + KLQ
Sbjct: 282 KLANESIVPNPRTVAYQNIISVCIDV------------FNLEDRSAKSVTANYI--KLQE 327
Query: 479 SWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
EL D+ ++ Q GLKQ+++ K G+ R+N+MGKRVN+ RSVI+
Sbjct: 328 VVSELYSARDV---------SSSNKAQAQGLKQLIEKKDGIFRKNIMGKRVNYIARSVIS 378
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVR 598
PDP + +D +G+P+EFA LT PV ++P N+ LR+ VINGP YPGA +++ G ++
Sbjct: 379 PDPAIGVDEVGLPVEFASKLTIPVGISPVNIEGLRQAVINGPE-YPGAEFVEDSSGRLIS 437
Query: 599 ISSSQAVQRESLAKRLIT 616
+ +R LA +L+T
Sbjct: 438 LKYISRDKRIHLANQLLT 455
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Query: 17 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 76
RSVI+PDP + +D +G+P+EFA LT PV ++P N+ LR+ VINGP YPGA +++
Sbjct: 374 RSVISPDPAIGVDEVGLPVEFASKLTIPVGISPVNIEGLRQAVINGPE-YPGAEFVEDSS 432
Query: 77 GSVVRISSSQAVQRESLAKRLIT 99
G ++ + +R LA +L+T
Sbjct: 433 GRLISLKYISRDKRIHLANQLLT 455
>gi|357114820|ref|XP_003559192.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like
[Brachypodium distachyon]
Length = 1868
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 148/530 (27%), Positives = 252/530 (47%), Gaps = 95/530 (17%)
Query: 106 RAIMKEKIITRQ--EVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLA 163
+ + +E ++ Q V E + +Y+++E+K++SV ++ ++ +PGGL DLA
Sbjct: 223 KGVTEEVLVLAQAPSVEVESILFGFYSEEEIKRVSVTRITKADRLDAKNCPVPGGLLDLA 282
Query: 164 MGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIP 223
MGPI+ D C TCG C GH GHIEL P+ N L F ++ LL+ +CF CH+ +
Sbjct: 283 MGPINAT-DTCNTCGQLSGLCPGHFGHIELSKPLFNPLLFGTLRDLLRSTCFSCHRFRLH 341
Query: 224 A---TSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLH---------PAQLVQLVDS 271
+ + + +++L+ G V +AK+L+++ EE++ + P+ +
Sbjct: 342 SEQVSPVRRYTRELELVARGDVARAKNLQDSGVAEEDVEMDEDSSVDQSSPSDRENKTWT 401
Query: 272 HVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQ------ 325
+Q AH A + ++L + VK KC C ++ Q
Sbjct: 402 SIQLKEAH------------------AIIFKLLKKQVK-KCANCDMRSPKVTCQIFGWLK 442
Query: 326 ---------QRKIIKSFKIDKDNL--DQS-------LDKSLNKSSNQIIRKREQGY---- 363
+RK I F ++ D+ D S D + SSNQI +
Sbjct: 443 IQDTKGSSVRRKAITDFNLEGDSHRHDSSENGVSGLSDDIIKGSSNQITGLSDDRIKEIP 502
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPV---LDTTKELIATDIMFIRSLVVPPNNLRPLSM 420
++A+EVE+ K LW NE F L L +++ ++ F++SL+V PN RP +
Sbjct: 503 LLATEVESILKDLWENEARFCMLLCDFQQNLSVSEKRRGYEMFFLKSLLVTPNRFRPSTS 562
Query: 421 EQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKE----QSDLLSEALKGIRGDTLNNKL 476
+ +EH +N L G ++ +A+++ + D+++
Sbjct: 563 SSLGIMEHPQNVLL-------GKVQEANLAVQHDKAHPNHMDIITR-------------- 601
Query: 477 QNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSV 536
W +LQ +V+L D+ G ++Q+LD K G+IRQ MMGKRVN + R+V
Sbjct: 602 ---WRDLQTSVNLFYDSSKGFGNGDGDGNG--IRQLLDKKGGVIRQKMMGKRVNHSCRTV 656
Query: 537 ITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGA 586
I+PDP+L ++ IG+P + A +TYP V P N L++ + NG ++PGA
Sbjct: 657 ISPDPFLAVNEIGIPPQAALKMTYPENVMPCNAKKLQEAINNGCGIHPGA 706
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 36/53 (67%)
Query: 17 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGA 69
R+VI+PDP+L ++ IG+P + A +TYP V P N L++ + NG ++PGA
Sbjct: 654 RTVISPDPFLAVNEIGIPPQAALKMTYPENVMPCNAKKLQEAINNGCGIHPGA 706
>gi|297739697|emb|CBI29879.3| unnamed protein product [Vitis vinifera]
Length = 1669
Score = 197 bits (501), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 153/544 (28%), Positives = 258/544 (47%), Gaps = 72/544 (13%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNY 181
E +K ++TD+EV++ S K+ SP+ +S+ +PGGLYD A+G I E PC +CG
Sbjct: 13 EAVKFSFFTDEEVRKYSFKKITSPLMLDSVQRPVPGGLYDPALGSIDEN-TPCQSCGQRS 71
Query: 182 TKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPAT------SQLLFINQIK 235
C GH GHI+L V N L F + LL+ +CF CH ++ SQL I++
Sbjct: 72 FYCPGHCGHIDLVSSVYNPLLFNLLHNLLQKTCFFCHHFKTSSSLVQKYVSQLELISKGD 131
Query: 236 LL-------------------DAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSI 276
++ D +V+ + + + + ++ L + L S+
Sbjct: 132 VVGAKNLDSISPSESSYPEDSDGSHVSCSSTVNSSARDNCSVHLKQQEWTSLQCIEAMSV 191
Query: 277 LAHGTKI-------CDINDYKGGEELRSAFVAQVLSRHVKRKCIFCAT----PINAISYQ 325
+ + K+ C + + F LS R + + P+N +
Sbjct: 192 MDNFLKLKHRDCKNCKAKSPQVTKPTFGWFHMAGLSDAQTRANVIRGSKLERPLNGVDTD 251
Query: 326 Q-RKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKRE--QGYVMASEVEADFKKLWTNEHL 382
+ I +D + + L++ ++ + I+++ G ++ SEV ++LW NE
Sbjct: 252 ETHSSIAPTDGIQDTVTKRLERKGAQAPIEFIKQKSFFSGPLLPSEVRDIMERLWENEAE 311
Query: 383 FLKCLIPVLD----TTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSIL 438
+ +L + + F+ +++VPP RP S Q+ +EH + L +L
Sbjct: 312 LCSFISDILQERLGASGNKAGYSMFFLETILVPPIKFRPPSKGQISVMEHPQTVLLGKVL 371
Query: 439 YSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNIN 498
+ +L + N E+S ++S W +LQ ++++L D K
Sbjct: 372 QANIALGNA--HANNSERSKIISR-----------------WMDLQQSINVLFDGKT--- 409
Query: 499 KTTGAHQID---GLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFA 555
G Q D G+ Q+L+ K G+ RQ MMGKRVNFA RSVI+PDPYL ++ IG+P FA
Sbjct: 410 -AAGQGQRDTGSGICQLLEKKEGVFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFA 468
Query: 556 KTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLI 615
LTYP VTPWNV LR +INGP ++PGA ++ S V+++ ++ + R S++++L
Sbjct: 469 LRLTYPEKVTPWNVVKLRDAIINGPEIHPGATHYVDK-LSTVKLAVNKKM-RISISRKLP 526
Query: 616 TPEG 619
+ G
Sbjct: 527 SSRG 530
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 41/56 (73%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGA 69
F RSVI+PDPYL ++ IG+P FA LTYP VTPWNV LR +INGP ++PGA
Sbjct: 444 FACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNVVKLRDAIINGPEIHPGA 499
>gi|427792959|gb|JAA61931.1| Putative rna polymerase iii large subunit, partial [Rhipicephalus
pulchellus]
Length = 1661
Score = 195 bits (495), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 100/271 (36%), Positives = 165/271 (60%), Gaps = 21/271 (7%)
Query: 363 YVMASEVEADFKKLWTNEHLFLKCLIPVLD--TTKELIATDIMFIRSLVVPPNNLRPLSM 420
Y+ E A +KLW E L+ L +L ++ D+ F+ +LVVPP RP++
Sbjct: 158 YLTPVEARAHLRKLWAKERPLLQNLFGILALASSSHESPVDMFFLEALVVPPTRFRPMNF 217
Query: 421 EQMPPVEHSRNKLYQSILYSCGSLKSVI--MAMKNKEQSDL---------LSEALKGIRG 469
E+++ +L C +L++V+ +A + +QS+ L + + + G
Sbjct: 218 MNGRKYENAQTVSLSRVLQCCDTLRAVLKLLARRGMDQSERPEDQMETERLEQLVGKVMG 277
Query: 470 DTLNNKLQNSWHELQYNVDLLMDA---KLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMG 526
L+ K+ +W+ LQ V++++D+ +LN NK T G+KQ+L+ K G+ R++MMG
Sbjct: 278 KDLDAKMHFAWNALQVAVNVVVDSELDRLNTNKGT-----PGIKQILEKKEGLFRKHMMG 332
Query: 527 KRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGA 586
KRVN+A RSVI+PDPY++++ IGVP+ FA L+YP PVT N+ LR+ VINGP++YPGA
Sbjct: 333 KRVNYAARSVISPDPYIDVEEIGVPMVFATKLSYPEPVTERNIAELRRAVINGPDIYPGA 392
Query: 587 NMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
+++ EDG V+R+ + +RE++AK+L+TP
Sbjct: 393 LLVEREDGGVIRLDPTNRTRREAVAKQLLTP 423
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 48/104 (46%), Positives = 74/104 (71%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDPY++++ IGVP+ FA L+YP PVT N+ LR+ VINGP++YPGA +++
Sbjct: 337 YAARSVISPDPYIDVEEIGVPMVFATKLSYPEPVTERNIAELRRAVINGPDIYPGALLVE 396
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKIITRQ 117
EDG V+R+ + +RE++AK+L+TP + R + KI+ R
Sbjct: 397 REDGGVIRLDPTNRTRREAVAKQLLTPTEAPQRTFARSKIVHRH 440
>gi|164655658|ref|XP_001728958.1| hypothetical protein MGL_3952 [Malassezia globosa CBS 7966]
gi|159102846|gb|EDP41744.1| hypothetical protein MGL_3952 [Malassezia globosa CBS 7966]
Length = 1673
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 152/534 (28%), Positives = 237/534 (44%), Gaps = 95/534 (17%)
Query: 180 NYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDA 239
N+ +C GH GHIELP PV + LF LL+ +C CH I + + Q LL+
Sbjct: 2 NHFECPGHFGHIELPAPVFHPLFMNHAYSLLRGTCLYCHHFKISKMALAKYTAQFHLLEY 61
Query: 240 GYVTQAK---------------DLEETLFNEENLRLHPAQLVQL---------VDSHVQS 275
G V +A+ D+ E NE+ L QL VD ++
Sbjct: 62 GLVDEAERIANEQFRGPHSAGVDVVEEGANEDGDDDDDEPLAQLQNDNQPAETVDDFIRR 121
Query: 276 I------LAHGTKICDIN--------DYKGGEELRSAFVAQVLSRHVKR---------KC 312
I L + C I Y +LR+ F+ ++ R +R K
Sbjct: 122 IRQAVHRLTAQARKCGIRRNADKGMATYSARRDLRNLFLKDIMRRRCERCQAINPTLRKD 181
Query: 313 IFCATPINAISYQQRKIIKSFKIDKDN--LDQSLDKSLNKSSNQIIR------------- 357
F +S + I ++ I + N +D++ ++ ++ Q IR
Sbjct: 182 GFVKITERDLSARDHAIHEARGIKRQNVLMDRASTMTVRDTNGQTIRAAGNEPDSESTIE 241
Query: 358 -----------KREQG----YVMASEVEADFKKLWTNEHLFLKCLI---PVLDTTKELIA 399
+E G V ASE A+ ++L+ NE + P+ +T A
Sbjct: 242 TAITLKEARKLSKEAGDHTRVVPASECRANLRRLFANESEICSLIFGRHPMFGSTPAPSA 301
Query: 400 TDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYS------CGSLKSVIMAMKN 453
D+ F+ + V P RP S+ E+ +N+L IL + C V N
Sbjct: 302 -DVFFLEVICVTPTRFRPASVMGDQTFENPQNELLTKILNTAFFVRDCNERAQVYQTKAN 360
Query: 454 -------KEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLN-INKTTGAHQ 505
EQ + ++ + ++L ++ +LQ +V+ MD+ N + G
Sbjct: 361 YPVLDEMNEQQAITAQKQWEMDRRAAMDQLLSAIMQLQVSVNCYMDSSKNPAPQRQGQAA 420
Query: 506 IDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVT 565
G+KQ L+ K G+ R++MMGKRVNFA RSVI+PD + + IGVP FAK LTYP PVT
Sbjct: 421 TPGVKQGLEKKEGLFRKHMMGKRVNFAARSVISPDVNIETNEIGVPPVFAKRLTYPEPVT 480
Query: 566 PWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPEG 619
N L+R++VINGP+VYPGA+ ++ EDG+ + + +R +LA +L+TP+G
Sbjct: 481 VHNYELMRQLVINGPDVYPGAHAVRGEDGTDTLLKNLSVEERTALANQLLTPQG 534
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 63/93 (67%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PD + + IGVP FAK LTYP PVT N L+R++VINGP+VYPGA+ ++
Sbjct: 446 FAARSVISPDVNIETNEIGVPPVFAKRLTYPEPVTVHNYELMRQLVINGPDVYPGAHAVR 505
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHR 106
EDG+ + + +R +LA +L+TP+ Q R
Sbjct: 506 GEDGTDTLLKNLSVEERTALANQLLTPQGQTSR 538
>gi|353240973|emb|CCA72815.1| probable DNA-directed RNA polymerase I [Piriformospora indica DSM
11827]
Length = 1755
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 163/579 (28%), Positives = 262/579 (45%), Gaps = 99/579 (17%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHI 191
++++++SV ++ +P+ ++ GGLYD A+GP ++R D C TC +Y +C GH GHI
Sbjct: 22 EDIRRISVKQIVNPVLLDNFNQPNLGGLYDPALGPSTQR-DVCATCHLDYFQCPGHFGHI 80
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEET 251
ELP PV + LF LL+ +C CH I +++LL+ G + A L+
Sbjct: 81 ELPAPVYHPLFMMVTYKLLRSTCLFCHHFKASRLHVAKTIGKLRLLERGLLEAANALDAA 140
Query: 252 LFNEENLRLHPAQ------LVQLVDSHVQSILAHGTKICDINDYKGGE--ELRSAFVAQV 303
F +E + A+ + Q V+ +V L H T DYK G + R A + +
Sbjct: 141 NFADEKSKDDEAEQVVEEKIAQKVELYVNINLQHATN-AKRGDYKDGPVYQARKAAIDEF 199
Query: 304 L------SRHVKRK-CIFCA----------------TPI-------------NAISYQ-- 325
L ++ +RK C A TP +A +Y
Sbjct: 200 LRVALASAKKCQRKQCGAAAYTFRKDGHTKIIEYDLTPKQKVQLDHLGLRRPDAFAYDAA 259
Query: 326 ----------QRKIIKSFKIDKDNLDQSLDKSLN---------------------KSSNQ 354
+++I KS + + +D+ +N +++N
Sbjct: 260 IHRQTIPRETEKRITKSDSRSESGSEMEVDEEINDEEMETDEGSGDDTAEVVHVARAANG 319
Query: 355 II---RKREQGYVMASEVEADFKKLWTNEHLFLKCLI-------PVLDTTKELIATDIMF 404
I R R + V EV A + L+ NE + PV + ++ DI F
Sbjct: 320 RIKGARGRNERVVAPEEVRAHLRWLFRNESTICSLIFGRQGPYAPVNASGFSPVSADIFF 379
Query: 405 IRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMK--NKEQSDLLSE 462
+ L V P RP + EH N+ ++ + +L+ + ++ + ++S + SE
Sbjct: 380 LEVLAVSPTRFRPPAKMGEQLFEHPHNQHLTKVINTSYNLRDITAQLRAGSVKESTMSSE 439
Query: 463 ALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKT-TGAHQIDGLKQMLDGKTGMIR 521
I +L + LQ +V+ +D+ N T G G+KQ L+ K G+ R
Sbjct: 440 ERNRILA-----RLFETLIVLQTDVNSYIDSSKNPTPTRQGKLPTPGIKQGLEKKEGLFR 494
Query: 522 QNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVING-- 579
+MMGKRVN+A RSVI+PD + + IG+P FA+ LT+P PVT NVT LR++VI G
Sbjct: 495 MHMMGKRVNYAARSVISPDVNIETNEIGIPPVFARKLTFPEPVTQHNVTELRELVIRGSN 554
Query: 580 PNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPE 618
P PGANM+Q EDG + QR ++A +L+TP+
Sbjct: 555 PKEGPGANMVQFEDGQTQSLDKLNLEQRTAIANQLLTPK 593
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 58/91 (63%), Gaps = 2/91 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVING--PNVYPGANM 71
+ RSVI+PD + + IG+P FA+ LT+P PVT NVT LR++VI G P PGANM
Sbjct: 504 YAARSVISPDVNIETNEIGIPPVFARKLTFPEPVTQHNVTELRELVIRGSNPKEGPGANM 563
Query: 72 IQNEDGSVVRISSSQAVQRESLAKRLITPED 102
+Q EDG + QR ++A +L+TP++
Sbjct: 564 VQFEDGQTQSLDKLNLEQRTAIANQLLTPKE 594
>gi|401826144|ref|XP_003887166.1| DNA-directed RNA polymerase subunit beta [Encephalitozoon hellem
ATCC 50504]
gi|337263120|gb|AEI69271.1| DNA-directed RNA polymerase subunit alpha [Encephalitozoon hellem]
gi|392998324|gb|AFM98185.1| DNA-directed RNA polymerase subunit beta' [Encephalitozoon hellem
ATCC 50504]
Length = 1396
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 152/505 (30%), Positives = 240/505 (47%), Gaps = 87/505 (17%)
Query: 121 PEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNN 180
P+ + Y+D+E+++ S ++V P++F+ GH + GGLYDL MGPI + C TC +
Sbjct: 7 PKKISFGLYSDEEIERASCMEVVVPVSFDRFGHPVQGGLYDLRMGPIDFSSN-CKTCNLS 65
Query: 181 YTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAG 240
C GH GHI+LP PV N + F + ++K CF C I +L+ ++ LL G
Sbjct: 66 LLNCPGHFGHIKLPRPVFNPILFDSLLSIVKCCCFQCKHFRITNYDRLILFCKLSLLRNG 125
Query: 241 YVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFV 300
+ L++ EE +L ++V V+S K + + +E+ F
Sbjct: 126 --KEIDGLDDLYMVEEE-----EELYRIVIEKVES----AKKNKSASPAERYQEVAHKFF 174
Query: 301 AQVLSRHVKRKCIFCATPINAISY-QQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKR 359
+ SR RKC+ C I+ +I+K F +R
Sbjct: 175 SNASSR---RKCVRCGHSNPRITRGANMRILKDF------------------------RR 207
Query: 360 EQGYVMASEVEADFKKLWTN------EHLFLK--CLIPVLDTTKELIATDIMFIRSLVVP 411
+G + E DF+ L + E+LFL L+ + +T+E I FI ++ V
Sbjct: 208 NEG---KDQDENDFELLSPDVVKELIENLFLNEGDLVESIFSTRE---PGIFFISNVPVV 261
Query: 412 PNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDT 471
PN RP+S+ +E+ + + I+ S+ ++M
Sbjct: 262 PNRFRPISIVNGKKIENPQIIYLRDII-------SISISM-------------------- 294
Query: 472 LNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQI-DGLKQMLDGKTGMIRQNMMGKRVN 530
K + W ELQ V D NI K A I G KQ+L+ K G+ R+N+MGKRVN
Sbjct: 295 --TKDLSYWPELQSAVLSSFD-NANIKKWNYASTIPPGHKQILERKEGLFRRNIMGKRVN 351
Query: 531 FAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 590
FAGR+VI+PDP + IG+P FA+ LT+P VT +NV+ L+K V+NGP YPG+ +Q
Sbjct: 352 FAGRTVISPDPNIETREIGIPSVFAEALTFPERVTSFNVSRLKKAVVNGP-TYPGSLYLQ 410
Query: 591 NEDGSVVRISSSQAVQRESLAKRLI 615
+ D ++ + +R +LA +L+
Sbjct: 411 DGD-VMLSLEHMADEKRYALANQLL 434
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 60/101 (59%), Gaps = 2/101 (1%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP + IG+P FA+ LT+P VT +NV+ L+K V+NGP YPG+ +Q
Sbjct: 352 FAGRTVISPDPNIETREIGIPSVFAEALTFPERVTSFNVSRLKKAVVNGP-TYPGSLYLQ 410
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKII 114
+ D ++ + +R +LA +L+ + R ++ ++
Sbjct: 411 DGD-VMLSLEHMADEKRYALANQLLDGKKTVWRHLVDGDVV 450
>gi|414866669|tpg|DAA45226.1| TPA: putative DNA-directed RNA polymerase family protein [Zea mays]
Length = 548
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 144/511 (28%), Positives = 246/511 (48%), Gaps = 96/511 (18%)
Query: 102 DQQHRAIMKEKIITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYD 161
D QH E++ + + +Y+D E+K++S+ K+ ++ +PGGL D
Sbjct: 3 DGQHIQAASEEV--------DSIHFSFYSDDEIKRISIKKITKSERLDAKNLPVPGGLLD 54
Query: 162 LAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKIN 221
AMGPI++ D C +CG + +C GH GHIEL P+ N L F ++ LL ++CF CHK
Sbjct: 55 PAMGPINDI-DICKSCGQHSVRCPGHFGHIELAKPLFNPLLFMSLKNLLHVTCFHCHKFR 113
Query: 222 IPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGT 281
+ ++N+++LL G + AK+LE+++ EE + D ++ + G
Sbjct: 114 LNKEQVDRYVNELELLVKGDIVCAKNLEDSV--EE-------AYLSKEDENMNKTTS-GD 163
Query: 282 KICDINDYKGGEELRSAFVAQVLSRHVKR---KCIFC-------ATPI-------NAISY 324
+ D K ++ V + S+ +K+ KC C ++PI S
Sbjct: 164 NSSSVKDKKTWTSIQLKEVLSIFSKIMKKRQKKCAKCDMKSPTISSPIFGWLVKDTKASA 223
Query: 325 QQRKIIKSFKIDKD----NLDQSLDKSLNKSSN----------------------QIIRK 358
+ I FK+ D N ++ L + S+ +++
Sbjct: 224 VRTNAIADFKLKGDGDIHNSGETGVSGLEEESSSPGMVSKDSINEVRGLSDDTIKELVAS 283
Query: 359 REQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIAT-------DIMFIRSLVVP 411
+ +++ +EVE+ K LW NE F C++ + D K + + ++ F+ SL+V
Sbjct: 284 SGKKHLLPTEVESILKDLWKNEARF--CML-LCDFQKNMSSEPEKRRGYEMFFLSSLLVA 340
Query: 412 PNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDT 471
PN RP + + +EH QS+L S ++S+L AL+ +
Sbjct: 341 PNRFRPSTSSSLGIMEHP-----QSVLLS------------KVQESNL---ALQHNNASS 380
Query: 472 LNNKLQNSWHELQYNVDLLMDAKLNINKT-TGAHQIDGLKQMLDGKTGMIRQNMMGKRVN 530
+ + W +LQ +V++L D+ + ++ AH G++Q+L+ K G++RQ MMGKRVN
Sbjct: 381 NHMDVLQRWMDLQRSVNVLYDSSKGLARSEKNAH---GIRQLLEKKEGILRQKMMGKRVN 437
Query: 531 FAGRSVITPDPYLNIDSIGVPLEFAKTLTYP 561
+A RSVI+PDPYL ++ IG+P FA LTYP
Sbjct: 438 YACRSVISPDPYLAVNEIGIPPVFATRLTYP 468
Score = 44.3 bits (103), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYP 44
+ RSVI+PDPYL ++ IG+P FA LTYP
Sbjct: 438 YACRSVISPDPYLAVNEIGIPPVFATRLTYP 468
>gi|340508051|gb|EGR33854.1| hypothetical protein IMG5_034860 [Ichthyophthirius multifiliis]
Length = 1642
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 164/593 (27%), Positives = 266/593 (44%), Gaps = 94/593 (15%)
Query: 117 QEVVPEIL---KLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMG-PISERGD 172
QEV+ + + + YYT +E+++LSV ++ SPI F+SL I GGLYD MG ++
Sbjct: 9 QEVISKRIAGVQFSYYTAEEIRKLSVKEITSPIAFDSLNRPIKGGLYDPLMGVSPYDKLT 68
Query: 173 PCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFIN 232
C TCG C GH+ HIEL +PV N + LL+ C C K + ++
Sbjct: 69 RCETCGCEGLDCPGHMAHIELLLPVYNPFLVDKLLKLLRTLCLNCFKFRMTKQKLRMYTK 128
Query: 233 QIKLLDAGYVTQAKD---LEETLFNEENLRLHPAQLVQLVDSHVQSI--------LAHGT 281
L+ GYV AK+ ++E+LF+ + + Q + ++ +S L +
Sbjct: 129 VFTLIKLGYVQDAKEYKSIQESLFSLQASSTNQKQQQEPQNNRRKSSECKTSDTELINNQ 188
Query: 282 KICDINDYKGGEELRSAFV------AQVLSR-HVKRKCIFCATPINAISYQQR---KIIK 331
KI + K + L++ AQ+LS +VK + F IN+ + +I+K
Sbjct: 189 KIISSQEQKANKMLQNNLKILEEKKAQILSLINVKNEPEFFKNGINSTTAMNNAFDEILK 248
Query: 332 SF------------------------------KIDKDNLDQSLDKSLNKSSNQIIRKREQ 361
F K K+N ++ + K + + + Q
Sbjct: 249 EFWAHINIGKCPHCKQQQSAVRKEGFSKFFVAKKGKNNHEEQDEPEQEKKQDISEKTKNQ 308
Query: 362 GYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIAT------------DIMFIRSLV 409
Y+ +++ + W+ E L + +D T++ + ++ FI +
Sbjct: 309 KYLDPIQIKQIMQLFWSKEKKILDLIFGRIDVTQKSLKNTKKGFKIFKNDYNMFFIEVIP 368
Query: 410 VPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAM-------KNKEQSDLLSE 462
VPPN RP + H + I+ L+ +I+ K K+ D L
Sbjct: 369 VPPNRFRPENKLGEQTFLHGHTVVLTKIIQFNVELRQLIVLQNQNLTEDKKKKLLDQLDS 428
Query: 463 ALKGIRGDTLNNKLQNS-------------WHELQYNVDLLMDAKLNINKTTGAHQIDG- 508
K N + Q S W ++Q +V++ D+ K++ A +G
Sbjct: 429 KFKNYLQLKQNTQFQQSLTNFVKINDIISKWLDIQDSVNIFFDSA----KSSKAQDREGT 484
Query: 509 -LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPW 567
++Q+L+ K G+ R MMGKRVN+A RSVI+PDP LN + +GVPL AK LT+P V +
Sbjct: 485 GIRQLLEKKEGLFRMKMMGKRVNYAARSVISPDPNLNTNEVGVPLFVAKKLTFPEHVNEY 544
Query: 568 NVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPEGN 620
NV LRK++INGP +PGAN I E+G+ + + + QR LAK L+ N
Sbjct: 545 NVKFLRKLIINGPFQHPGANFII-ENGNKISLEALNEQQRIGLAKTLLNNSKN 596
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP LN + +GVPL AK LT+P V +NV LRK++INGP +PGAN I
Sbjct: 508 YAARSVISPDPNLNTNEVGVPLFVAKKLTFPEHVNEYNVKFLRKLIINGPFQHPGANFII 567
Query: 74 NEDGSVVRISSSQAVQRESLAKRLI 98
E+G+ + + + QR LAK L+
Sbjct: 568 -ENGNKISLEALNEQQRIGLAKTLL 591
>gi|337263094|gb|AEI69258.1| RNA polymerase I largest subunit [Encephalitozoon romaleae]
gi|396081289|gb|AFN82907.1| DNA-directed RNA polymerase subunit alpha [Encephalitozoon romaleae
SJ-2008]
Length = 1396
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 145/498 (29%), Positives = 235/498 (47%), Gaps = 73/498 (14%)
Query: 121 PEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNN 180
P+ + Y+D+E+++ S ++V P +F+ GH + GGLYDL MGP ++ C TC +
Sbjct: 7 PKKISFGLYSDEEIERASCMEVVIPASFDRFGHPVQGGLYDLRMGP-TDLSSNCKTCNLS 65
Query: 181 YTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAG 240
C GH GHI+LP PV N + F + ++K CF C I +L+ ++ LL G
Sbjct: 66 LLSCPGHFGHIKLPRPVFNPMLFDTLLSIVKCCCFQCKHFRITNYDRLILFCKLSLLKNG 125
Query: 241 YVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFV 300
D E + +L ++V V+S T + + +E+ F+
Sbjct: 126 EEINGLD-------ELYMVEEEEELYRIVTEKVESSKKRKTA----SSTERHQEVVHKFL 174
Query: 301 AQVLSRHVKRKCIFCATPINAISY-QQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKR 359
+ SR RKC+ C I+ KI+K+F+ ++ ++ D L
Sbjct: 175 SNTGSR---RKCVRCGHSNPWITKGSNMKILKNFRNKEEKEEEEKDFEL----------- 220
Query: 360 EQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLS 419
++ ++ + L+ NE ++ + D F+ ++ V PN RP++
Sbjct: 221 ----LLPDVIKELIENLFLNEADLIESIFSTRDPG-------FFFMSNIPVIPNRFRPIN 269
Query: 420 MEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNS 479
+ +E+ ++ IL C S+ DL +
Sbjct: 270 IVNGKKIENPQSIYLNDILKICISM-----------VKDL------------------SY 300
Query: 480 WHELQYNVDLLMDAKLNINKTTGAHQI-DGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
W ELQ V D NI K + I G KQ+L+ K G+ R+N+MGKRVNFAGR+VI+
Sbjct: 301 WPELQGAVLSSFDNS-NIKKWHHSSTIPPGHKQILERKDGLFRRNIMGKRVNFAGRTVIS 359
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSV-V 597
PDP L IG+P FA+ LT+P VT +NV+ L+K V+NGP +YPG+ +Q DG+V +
Sbjct: 360 PDPNLETREIGIPSIFAEALTFPEGVTSFNVSRLKKAVVNGP-IYPGSLYLQ--DGNVML 416
Query: 598 RISSSQAVQRESLAKRLI 615
+ +R +LA +L+
Sbjct: 417 SLKHMADEKRYALANQLL 434
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 56/86 (65%), Gaps = 4/86 (4%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L IG+P FA+ LT+P VT +NV+ L+K V+NGP +YPG+ +Q
Sbjct: 352 FAGRTVISPDPNLETREIGIPSIFAEALTFPEGVTSFNVSRLKKAVVNGP-IYPGSLYLQ 410
Query: 74 NEDGSV-VRISSSQAVQRESLAKRLI 98
DG+V + + +R +LA +L+
Sbjct: 411 --DGNVMLSLKHMADEKRYALANQLL 434
>gi|409049783|gb|EKM59260.1| hypothetical protein PHACADRAFT_169748 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1712
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 155/585 (26%), Positives = 266/585 (45%), Gaps = 93/585 (15%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
+ + ++V+++S ++ +P + L GGLYD A+GP S++ D C TC +Y
Sbjct: 14 ISFSFLATEDVRRISAKQIVNPNLLDELNRPTSGGLYDPALGP-SDKQDICATCRLSYFT 72
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVT 243
C GH GHIELP PV + LF + +L+ +C CHK F +++LL+ G +
Sbjct: 73 CPGHFGHIELPAPVFHPLFMGKMYDVLRGTCLFCHKFKANPYMICKFQGKLRLLEHGLLL 132
Query: 244 QAKDLEE-TLFNEENLRL------HPAQLVQLVDSHVQSILAH---GTKICDINDYKGGE 293
AK L++ + +E+ +L P + + V + +A G +DYK +
Sbjct: 133 PAKMLDDLRVTSEKKGKLEGDEDDEPTETFENYQMRVNAFVAAHLTGASSSKRDDYKDTQ 192
Query: 294 --ELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKS 351
+ R A + + L + +KC + +A ++++ K + D ++ ++
Sbjct: 193 VYQERKAVMHEFLKATITKKCQNPSCGAHAYTFRKEGHTKIIEYDLSAKQKARHDIIDLK 252
Query: 352 SNQII------------------RKREQGYVMASEVEADFKKLWTNE---------HLFL 384
+ I+ R EQG ++ EA+ + +W+ + H
Sbjct: 253 RSNILDAERASRGVKPAHSPSYSRTNEQG-DSGTDSEAEGEDVWSEDEEQNPAVTHHQLP 311
Query: 385 KCLIPVLDTT----------------------KELIATDIMFIRSLVVPPNNLRPLSMEQ 422
K + T+ KE + ++F R P LS+
Sbjct: 312 KSASGKVKTSRGRNERVMAPIECRAHLRQLFEKESVMCSLLFGRHGPFAPLTPHRLSLAS 371
Query: 423 M----------------PPV-------EHSRNKLYQSILYSCGSLKSVIMAM-KNKEQSD 458
PP EH +N+L +L + L+ + ++ E+
Sbjct: 372 ADMFFLEVLPVAPTRFRPPAKMNDMLFEHPQNELLTRVLTASYRLRELSQSLHAASEKGS 431
Query: 459 LLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKT-TGAHQIDGLKQMLDGKT 517
EA K DTL +L ++ +LQ +V+ +D+ N G G+KQ+L+ K
Sbjct: 432 SADEATK----DTLLQQLLDNLIQLQVHVNSFIDSSKNPQPVRQGKLPPSGVKQLLEKKE 487
Query: 518 GMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVI 577
G+ R++MMGKRVN+A RSVI+PD + + IG+P FA+ LT+P PVTP N +R +VI
Sbjct: 488 GLFRKHMMGKRVNYAARSVISPDVNIEPNEIGIPPVFARKLTFPEPVTPINFHEMRALVI 547
Query: 578 NGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP-EGNY 621
GP YPGA M++ EDG + + + QR ++A +L+TP EG++
Sbjct: 548 AGPRSYPGATMVEYEDGHLQFLDNLSVEQRTAVANQLLTPQEGDH 592
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 59/92 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PD + + IG+P FA+ LT+P PVTP N +R +VI GP YPGA M++
Sbjct: 501 YAARSVISPDVNIEPNEIGIPPVFARKLTFPEPVTPINFHEMRALVIAGPRSYPGATMVE 560
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQH 105
EDG + + + QR ++A +L+TP++ H
Sbjct: 561 YEDGHLQFLDNLSVEQRTAVANQLLTPQEGDH 592
>gi|429962641|gb|ELA42185.1| hypothetical protein VICG_00828 [Vittaforma corneae ATCC 50505]
Length = 662
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 146/501 (29%), Positives = 222/501 (44%), Gaps = 90/501 (17%)
Query: 121 PEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNN 180
P+ L L +Y+D E+ ++S V+V P +F+ GH +P GLYDL MGP++ C TC
Sbjct: 7 PKSLSLGWYSDDEILKISAVEVTLPTSFDMFGHPVPDGLYDLRMGPLN-MDSTCQTCKLG 65
Query: 181 YTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAG 240
Y C GH GH L PV+N L F L+K C C I A + F ++K L G
Sbjct: 66 YLSCPGHFGHYRLSKPVLNPLSFDFTYALIKSCCCNCFHFKITANERFAFYTRLKALKKG 125
Query: 241 YVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFV 300
+L T +EE + +L + + ++I CD L S F+
Sbjct: 126 INISNIELFVTEKSEEMVVKELNELKENRSGYERTIH------CD---------LVSQFI 170
Query: 301 AQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKRE 360
+V + +C F + K K+ + +I++
Sbjct: 171 RKVSGKGTCPRCHF----------KSPKFTKAMGM------------------RILKTNP 202
Query: 361 QG---YVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRP 417
G YV V+ KL+ +E + + + ++ K ++ FI L + PN RP
Sbjct: 203 SGMCDYVNPQLVKDTISKLFEHESVLV---FEMFNSDK----LEMFFINILPIMPNKFRP 255
Query: 418 LSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQ 477
+ E N I++S + +N EQ
Sbjct: 256 ANFVANKVSESPLNSHLSRIIHSS-------VMTENDEQH-------------------- 288
Query: 478 NSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVI 537
W +LQ +V D+ + T H KQ+++ K G+ R+N+MGKRVN+A RSVI
Sbjct: 289 --WIDLQSSVLYYFDSSKSARGTYVGH-----KQIMEKKEGLFRKNIMGKRVNYAARSVI 341
Query: 538 TPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
+PDP L +G+PL FA LT+P VT +N LRKMVING YPGAN +QN +G+++
Sbjct: 342 SPDPSLEARDVGIPLVFATQLTFPEKVTTFNFEKLRKMVINGLQ-YPGANFVQN-NGALI 399
Query: 598 RISSSQAVQRESLAKRLITPE 618
+ R S+A +L+ E
Sbjct: 400 NLRYISYENRISIANQLLDGE 420
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 58/96 (60%), Gaps = 2/96 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP L +G+PL FA LT+P VT +N LRKMVING YPGAN +Q
Sbjct: 335 YAARSVISPDPSLEARDVGIPLVFATQLTFPEKVTTFNFEKLRKMVINGLQ-YPGANFVQ 393
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIM 109
N +G+++ + R S+A +L+ E R ++
Sbjct: 394 N-NGALINLRYISYENRISIANQLLDGEKVVWRHLL 428
>gi|19074219|ref|NP_584825.1| DNA-DIRECTED RNA POLYMERASE I [Encephalitozoon cuniculi GB-M1]
gi|19068861|emb|CAD25329.1| DNA-DIRECTED RNA POLYMERASE I [Encephalitozoon cuniculi GB-M1]
Length = 1395
Score = 179 bits (453), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 140/496 (28%), Positives = 231/496 (46%), Gaps = 69/496 (13%)
Query: 121 PEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNN 180
P+ + Y+D+E+++ S ++V P F+ GH I GGLYDL MGP+ + C TC +
Sbjct: 7 PKNISFGSYSDEEIERNSCMEVVVPGCFDKFGHPIRGGLYDLRMGPL-DLSSNCKTCNLS 65
Query: 181 YTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAG 240
+ C GH GHI+L V+N +FF + +++ CF C I +L+ + LL G
Sbjct: 66 FLNCPGHFGHIKLSRIVLNPMFFDSLFSIVRCYCFQCKHFRITNYDRLILFCKFSLLLNG 125
Query: 241 YVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFV 300
+A+DL+ E +L ++V +++ + ++ + +E+ F+
Sbjct: 126 --EEAEDLDRLYMVSEE-----EELYKIVSERIENAKKNRSEPL----MESHQEVVHRFL 174
Query: 301 AQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKRE 360
SR RKC+ C + KI+K K+ + K L K + + ++
Sbjct: 175 QNAGSR---RKCVRCG-------HSNPKIVKGAKM-------KVLKDLRKGNEKDEDGKD 217
Query: 361 QGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSM 420
++ V L++NE ++ + D + FI +L V PN RP+ +
Sbjct: 218 LEFLSPDAVRELMDDLFSNEADLIESIFFRRDPG-------MFFISNLPVIPNRFRPMIV 270
Query: 421 EQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSW 480
E+ + IL R L K + W
Sbjct: 271 LDGKKAENFQTLYLNDIL-----------------------------RVSVLVTKDLSYW 301
Query: 481 HELQYNVDLLMDAKLNINKTTGAHQID-GLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
ELQ + D K NI+K + + G KQ+L+ K G+ R+N+MGKRVNFA R+VI+P
Sbjct: 302 PELQAAILSSFDNK-NISKWSRTRMVPPGHKQILERKDGLFRRNIMGKRVNFAARTVISP 360
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
DP L IG+PL FA+ LT+P +NV L+K V+NGP YPG+ +Q+ D ++ +
Sbjct: 361 DPNLETREIGIPLVFAEALTFPERAASFNVDRLKKAVVNGP-TYPGSLYLQDGD-VMLSL 418
Query: 600 SSSQAVQRESLAKRLI 615
+ +R +LA +L+
Sbjct: 419 AHMPDEKRYALANQLL 434
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L IG+PL FA+ LT+P +NV L+K V+NGP YPG+ +Q
Sbjct: 352 FAARTVISPDPNLETREIGIPLVFAEALTFPERAASFNVDRLKKAVVNGP-TYPGSLYLQ 410
Query: 74 NEDGSVVRISSSQAVQRESLAKRLI 98
+ D ++ ++ +R +LA +L+
Sbjct: 411 DGD-VMLSLAHMPDEKRYALANQLL 434
>gi|449328924|gb|AGE95199.1| DNA-directed RNA polymerase I [Encephalitozoon cuniculi]
Length = 1395
Score = 178 bits (452), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 140/496 (28%), Positives = 231/496 (46%), Gaps = 69/496 (13%)
Query: 121 PEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNN 180
P+ + Y+D+E+++ S ++V P F+ GH I GGLYDL MGP+ + C TC +
Sbjct: 7 PKNISFGSYSDEEIERNSCMEVVVPGCFDKFGHPIRGGLYDLRMGPL-DLSSNCKTCNLS 65
Query: 181 YTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAG 240
+ C GH GHI+L V+N +FF + +++ CF C I +L+ + LL G
Sbjct: 66 FLNCPGHFGHIKLSRIVLNPMFFDSLFSIVRCYCFQCKHFRITNYDRLILFCKFSLLLNG 125
Query: 241 YVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFV 300
+A+DL+ E +L ++V +++ + ++ + +E+ F+
Sbjct: 126 --EEAEDLDRLYMVSEE-----EELYKIVSERIENAKKNRSEPL----MESHQEVVHRFL 174
Query: 301 AQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKRE 360
SR RKC+ C + KI+K K+ + K L K + + ++
Sbjct: 175 QNAGSR---RKCVRCG-------HSNPKIVKGAKM-------KVLKDLRKGNEKDEDGKD 217
Query: 361 QGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSM 420
++ V L++NE ++ + D + FI +L V PN RP+ +
Sbjct: 218 LEFLSPDAVRELMDDLFSNEADLIESIFFRRDPG-------MFFISNLPVIPNRFRPMIV 270
Query: 421 EQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSW 480
E+ + IL R L K + W
Sbjct: 271 LDGKKAENFQTLYLNDIL-----------------------------RVSVLVTKDLSYW 301
Query: 481 HELQYNVDLLMDAKLNINKTTGAHQID-GLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
ELQ + D K NI+K + + G KQ+L+ K G+ R+N+MGKRVNFA R+VI+P
Sbjct: 302 PELQAAILSSFDNK-NISKWSRTRMVPPGHKQILERKDGLFRRNIMGKRVNFAARTVISP 360
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
DP L IG+PL FA+ LT+P +NV L+K V+NGP YPG+ +Q+ D ++ +
Sbjct: 361 DPNLETREIGIPLVFAEALTFPERAASFNVDRLKKAVVNGP-TYPGSLYLQDGD-VMLSL 418
Query: 600 SSSQAVQRESLAKRLI 615
+ +R +LA +L+
Sbjct: 419 AHMPDEKRYALANQLL 434
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L IG+PL FA+ LT+P +NV L+K V+NGP YPG+ +Q
Sbjct: 352 FAARTVISPDPNLETREIGIPLVFAEALTFPERAASFNVDRLKKAVVNGP-TYPGSLYLQ 410
Query: 74 NEDGSVVRISSSQAVQRESLAKRLI 98
+ D ++ ++ +R +LA +L+
Sbjct: 411 DGD-VMLSLAHMPDEKRYALANQLL 434
>gi|443724446|gb|ELU12458.1| hypothetical protein CAPTEDRAFT_154177 [Capitella teleta]
Length = 1442
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 97/261 (37%), Positives = 154/261 (59%), Gaps = 7/261 (2%)
Query: 361 QGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIAT--DIMFIRSLVVPPNNLRPL 418
Q Y+ ++V ++LW N+ FL+ LI LD + + D+ FI L V P RP+
Sbjct: 18 QVYLTQTDVRKHLQQLWVNDSEFLRKLIGALDVCSKDVDNPFDVFFIEVLPVIPTKFRPV 77
Query: 419 SMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQN 478
S E + + C L+ ++ +MK E++ ++E + G + + KL
Sbjct: 78 SFMGEKKFESGQTTTLCRCVGLCWELRGILASMKADEETPEITEEVPGRKSKS--EKLYA 135
Query: 479 SWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGKTGMIRQNMMGKRVNFAGRSV 536
+W LQ V+ ++D+ L+++ T ++ + G++Q+L+ K G+ R+ MMGKRV+FA RSV
Sbjct: 136 AWIALQVGVNAIVDSTLDVDMTVKSNNKIMPGVRQILEKKEGLFRKFMMGKRVDFACRSV 195
Query: 537 ITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSV 596
I+PDPY++ + IGVP+ FA LTYP PVTPWN L++ V+NGP +PGA + EDG
Sbjct: 196 ISPDPYISTNQIGVPMVFALKLTYPQPVTPWNFQELKQAVLNGPLKHPGATQVIMEDGRR 255
Query: 597 VRISSSQAVQRESLAKRLITP 617
V + + A QRES+AK+L+ P
Sbjct: 256 VLLKNDLA-QRESIAKQLLAP 275
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 61/87 (70%), Gaps = 1/87 (1%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDPY++ + IGVP+ FA LTYP PVTPWN L++ V+NGP +PGA +
Sbjct: 190 FACRSVISPDPYISTNQIGVPMVFALKLTYPQPVTPWNFQELKQAVLNGPLKHPGATQVI 249
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
EDG V + + A QRES+AK+L+ P
Sbjct: 250 MEDGRRVLLKNDLA-QRESIAKQLLAP 275
>gi|300708969|ref|XP_002996654.1| hypothetical protein NCER_100217 [Nosema ceranae BRL01]
gi|239605972|gb|EEQ82983.1| hypothetical protein NCER_100217 [Nosema ceranae BRL01]
Length = 1079
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 139/476 (29%), Positives = 210/476 (44%), Gaps = 85/476 (17%)
Query: 120 VPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGN 179
+P+ + +Y D+E+ ++SV+++ P+ ++ GH P GLYD MGP + C TC
Sbjct: 6 IPDKISFTFYKDEEIIKMSVLEITQPLCLDTFGHPFPDGLYDARMGPFNN-DSLCKTCNL 64
Query: 180 NYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDA 239
+Y C GH G+I+L PV N L F + +LK +C C + I +L++ ++ LL
Sbjct: 65 SYLTCPGHFGYIKLFKPVFNPLLFSTMYSVLKSACHKCGLLKITNRDRLIYFLKLNLLKR 124
Query: 240 GYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAF 299
GY D T NE +L A L +L + K +++ L F
Sbjct: 125 GYPIDNLDYLSTCNNENDLCKKIADL----------LLKYSDKSRASSNF-----LHQEF 169
Query: 300 VAQVLSRHVKR-KCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRK 358
+ R KC C Q L S N + ++
Sbjct: 170 CNLIFKTASARTKCAQCKMS----------------------SQKLTTSKNLKISYVLEN 207
Query: 359 REQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPL 418
Q + ++ FKK++ NE ++ + D + F+ ++ VPP RP+
Sbjct: 208 NSQKIFLIEDIIDIFKKVFNNEKKLMESIFSTADY-------KMFFLFNISVPPVKFRPV 260
Query: 419 SMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQN 478
+ E+ +N Y IL KN N +LQ
Sbjct: 261 NFFNGRMYENPQNIHYTRIL-------------KN-------------------NIELQT 288
Query: 479 S---WHELQYNVDLLMDA-KLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGR 534
+ W ELQ + + D+ K +K GA G KQ+L+ K G+ R+N+MGKRVNFA R
Sbjct: 289 NPDFWPELQAAILIYFDSSKSQYSKGDGAAA--GHKQILEKKEGLFRRNIMGKRVNFAAR 346
Query: 535 SVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 590
SVI+PDP L+ +G+P FA+ LT+P V N LRK VING +PGAN IQ
Sbjct: 347 SVISPDPNLHTREMGIPKIFAEKLTFPERVNANNYDKLRKAVINGRE-FPGANAIQ 401
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP L+ +G+P FA+ LT+P V N LRK VING +PGAN IQ
Sbjct: 343 FAARSVISPDPNLHTREMGIPKIFAEKLTFPERVNANNYDKLRKAVINGRE-FPGANAIQ 401
>gi|328854434|gb|EGG03566.1| hypothetical protein MELLADRAFT_75289 [Melampsora larici-populina
98AG31]
Length = 1725
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 152/582 (26%), Positives = 250/582 (42%), Gaps = 116/582 (19%)
Query: 133 EVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIE 192
+++ +SV+++ +P ++ G GLYD +GP R D C TC + T+C GH GHIE
Sbjct: 23 DIRSISVLQITNPSLLDNTGAPTQSGLYDPRLGPFQTR-DICRTCRLSNTQCPGHFGHIE 81
Query: 193 LPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFIN-------------------- 232
L VPV + LF LL+ +CF CH S+++ +
Sbjct: 82 LNVPVFHPLFMTHAFHLLRGTCFHCHHF---LASEIIIVRYAAKLKLLNHGLLLESDAVD 138
Query: 233 ---QIKL--LDAGYVTQAKDLEETLF----------NEENLRLHPAQLVQLVDSHVQSIL 277
IKL + AG + ++ET E +L + A L + V+ ++ +
Sbjct: 139 DFPTIKLSNVKAG----KRGIDETEEGLSQEEEEEDKEFDLPYYKATLKKFVEECIEKQI 194
Query: 278 AHGTKICDINDYKGGE--ELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKI 335
+K N YK G + R +++++ K++C C + I F +
Sbjct: 195 RKESKTSKDN-YKIGMCFDKRKKIISELIKLLPKKRCERCRAYACRMRKDGHTKIMEFSL 253
Query: 336 DKDNLDQSLDKSLN---------KSSNQIIRKREQG---------------------YVM 365
D L+ ++SNQI ++G ++
Sbjct: 254 ASKQADIHRAMELHRPDVLALARRNSNQIYEGEDEGAMDLDTPNDTASGTKKKQVERMIL 313
Query: 366 ASEVEADFKKLWTNEHLFLKCLI----PVL---DTTKELIATDIMFIRSLVVPPNNLRPL 418
A E A + L+ NE L P + + + D+ F+ + VPP RP
Sbjct: 314 AEEARAHLRLLFQNESEICDLLYDTHGPAMQKENQSNSSATADMFFLDVIAVPPTKFRPA 373
Query: 419 SMEQMPPVEHSRNKLYQSILYSC-------------------GSLKSVIMAMKNKEQSDL 459
++ +E +N L +IL G+L ++ ++ ++Q L
Sbjct: 374 AVMGGQTLEAPQNLLLGAILMQTVKIRDLNEKLAAVSEKPPNGALAQALLIVQKEQQKKL 433
Query: 460 LSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNIN-KTTGAHQIDGLKQMLDGKTG 518
S+ L+G G +Q V+ L+D+ N G G+KQ+L+ K G
Sbjct: 434 YSQILEGCIG-------------MQIAVNSLLDSNRNPTVMAKGKLPPQGVKQILEKKEG 480
Query: 519 MIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVIN 578
+ R NMMGKRVN+A RSVI+PD + + IGVP FAK LT+P VT N + K+V N
Sbjct: 481 LFRMNMMGKRVNYAARSVISPDINIETNEIGVPPVFAKKLTFPEFVTAHNFDKMHKLVCN 540
Query: 579 GPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPEGN 620
GP+V+PGA ++++DG++V + R++LA L+ N
Sbjct: 541 GPHVHPGAVFVEDDDGTMVALDRMDGESRKALANTLLQTSSN 582
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 56/94 (59%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PD + + IGVP FAK LT+P VT N + K+V NGP+V+PGA ++
Sbjct: 493 YAARSVISPDINIETNEIGVPPVFAKKLTFPEFVTAHNFDKMHKLVCNGPHVHPGAVFVE 552
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRA 107
++DG++V + R++LA L+ R+
Sbjct: 553 DDDGTMVALDRMDGESRKALANTLLQTSSNADRS 586
>gi|324499645|gb|ADY39853.1| DNA-directed RNA polymerase I subunit RPA1 [Ascaris suum]
Length = 909
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 146/499 (29%), Positives = 228/499 (45%), Gaps = 79/499 (15%)
Query: 188 IGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIP--ATSQLLFINQIKLLDAGYVTQA 245
+G+I+L VPV N L F L+K +C CH+ + + + Q++ LD G ++ A
Sbjct: 1 MGYIQLDVPVFNPLLFSFTYSLMKGTCVHCHRFTCQTNGVAAKILLAQLRALDLGMLSTA 60
Query: 246 KDLEE-----------------TLFNE----ENLRLHPAQLVQLVDSHVQSILAHGTKIC 284
LE L NE L A+L S +Q + K
Sbjct: 61 HQLESYISEKFSHTGNSIGDTPQLSNEMTAITELDAIFAELSGKSTSSLQKDMVKPMK-- 118
Query: 285 DINDYKGGEELRSAFVAQVLSRHVKRKCIFC----------------------------- 315
N + L AF L +H+KR C C
Sbjct: 119 --NAVELKRSLMHAFCRDHLFKHMKR-CKLCHGGNGVLRNDGGRCILIDFSGVATTRAAK 175
Query: 316 -ATPINAIS--YQQRKIIKSFKIDKDNLDQSL--DKSL---NKSSNQIIRKR-------- 359
+ NA++ +Q + +D+ D+ L D SL N ++ + K+
Sbjct: 176 MSAKFNAVNDLMEQEVEVDPNDVDEKEGDKKLLNDNSLGMLNDTAELTLHKQLAAVENGT 235
Query: 360 -EQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTT-KELIATDIMFIRSLVVPPNNLRP 417
E+ A EV F+ +W N+ FLK L P+ D E D++F ++VPP RP
Sbjct: 236 CEKLAWRAVEVREHFRMVWKNDAAFLKKLFPLFDCDDSEHCPMDVLFCEKVLVPPTKFRP 295
Query: 418 LSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKG-IRGDTLNNKL 476
+ + E+ + + +L + ++++V MA+ + + L E + + G T+ K+
Sbjct: 296 IRYFKGDKFENPQTVNLRKLLEATETMRAVRMAVSGGKNNAALMELISTRVPGKTMREKM 355
Query: 477 QNSWHELQYNVDLLMDAKLNINKTTGAHQ-IDGLKQMLDGKTGMIRQNMMGKRVNFAGRS 535
NS+ LQ + + D ++++T+ I G+KQ+L+ K G+ R NMMGKRVNFA RS
Sbjct: 356 HNSYLVLQQRIGAIFDQ--DLDRTSDQRSLIPGIKQILEKKQGLFRMNMMGKRVNFACRS 413
Query: 536 VITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGS 595
VITPDPYL+ID IG+P FAK LT+P P + N+ LRK+V NGP +PGAN + G
Sbjct: 414 VITPDPYLDIDEIGIPEIFAKKLTFPEPASLINLPKLRKLVKNGPAKHPGANFVLRPGGF 473
Query: 596 VVRISSSQAVQRESLAKRL 614
+ + +R + AKRL
Sbjct: 474 KQVLLDEKREERFAEAKRL 492
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 53/84 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVITPDPYL+ID IG+P FAK LT+P P + N+ LRK+V NGP +PGAN +
Sbjct: 409 FACRSVITPDPYLDIDEIGIPEIFAKKLTFPEPASLINLPKLRKLVKNGPAKHPGANFVL 468
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
G + + +R + AKRL
Sbjct: 469 RPGGFKQVLLDEKREERFAEAKRL 492
>gi|345316424|ref|XP_003429747.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like, partial
[Ornithorhynchus anatinus]
Length = 647
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 132/455 (29%), Positives = 224/455 (49%), Gaps = 43/455 (9%)
Query: 136 QLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPV 195
+LSV + +P +++G+ P GLYDL++GP R + C+TC ++ C GH+GHI LP+
Sbjct: 3 KLSVKSITNPRYVDNVGNPAPNGLYDLSLGPADNR-EVCSTCVQDFQNCPGHLGHINLPL 61
Query: 196 PVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETL--F 253
V N LFF + LL++ SC CH + P + L + Q+++LD G + +LE TL F
Sbjct: 62 IVYNPLFFEKLFLLIRGSCLNCHLLTCPRSVIHLLLCQLRVLDVGALQGVYELEATLSRF 121
Query: 254 NEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVL-SRHVKRKC 312
EEN ++ ++ + +L + + K E + +A S ++C
Sbjct: 122 LEENPNASAVEIQDELEECTREVLGNDPLGSQGSQVKNVCESKRTLIAHFWKSNMTSKRC 181
Query: 313 IFCATPIN---------------AISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIR 357
C T + +++++ K K + D + + SL Q+ R
Sbjct: 182 PHCKTGRSLVRKEHNSKLTVTYPGVAHRKSKKSKESEKDSEKNQEKTQPSLAIDDAQLGR 241
Query: 358 KREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIAT---DIMFIRSLVVPPNN 414
+ GY+ S LW NE FL L +D T+ + A ++ F+ +VVPP+
Sbjct: 242 R---GYLTPSTARDHIVALWENEGFFLNHLFSRIDITENVEAGFNPEMFFLDLVVVPPSR 298
Query: 415 LRPLSM--EQMPPVEHSRN--------KLYQSILYSCGSLKSV----IMAMKNKEQSDLL 460
RP+S +QM + N +L Q +L K + + KE +
Sbjct: 299 YRPISRLGDQMFTNGQTVNLQAVMKDVELIQKLLALMAQEKKLSQETVETASEKESLVPM 358
Query: 461 SEALKG-IRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGM 519
+ G I G +L +KL N W LQ +V+++ D++++ T + G++Q+L+ K G+
Sbjct: 359 DRSFLGLIPGQSLTDKLYNIWIRLQSHVNIVFDSEMDKLMT---EKYPGVRQILEKKDGL 415
Query: 520 IRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEF 554
R++MMGKRV++A RSVI PD Y++ + IG+PL +
Sbjct: 416 FRKHMMGKRVDYAARSVICPDMYISTNEIGIPLVY 450
>gi|452002907|gb|EMD95365.1| hypothetical protein COCHEDRAFT_1129734 [Cochliobolus
heterostrophus C5]
Length = 1779
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 106/290 (36%), Positives = 159/290 (54%), Gaps = 18/290 (6%)
Query: 342 QSLDKSLNKSSNQIIRKRE--------QGYVMASEVEADFKKLWTNEHLFLKCLI-PVLD 392
Q D SL + ++ RK + Q YV ++EV+A L+ NE ++ L P
Sbjct: 301 QQADGSLVATEARMARKTKTDETLEAAQEYVNSTEVKAAMTLLFENESEMMRLLYSPYGS 360
Query: 393 TTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMK 452
+ ++ D+ F ++++VPPN RP E S+NKLY+ IL +C S++ + M+
Sbjct: 361 KSLVDVSADMFFTQAIIVPPNKFRPEDKTGDSIAESSKNKLYKGILEACESIRQISQEMQ 420
Query: 453 NKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGA-HQIDGLKQ 511
K G R ++ +Q + LQ V+ L+D N + GA DG+KQ
Sbjct: 421 GKPNE-------LGFRQRNFDD-MQTQFVNLQGAVNALIDRDANPVQGRGAVTNADGIKQ 472
Query: 512 MLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTL 571
L+ K G+ R+NMMGKRVNFA RSVI+PDP + + IGVP FA LTYP PVT N
Sbjct: 473 GLEKKEGLFRKNMMGKRVNFAARSVISPDPNIETNEIGVPPVFAVKLTYPEPVTNHNFYD 532
Query: 572 LRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPEGNY 621
L++ VINGP+ +PGA+ I+NE G ++ + +R +LA +L+ P +Y
Sbjct: 533 LKEAVINGPDKWPGAHAIENEFGQIISLKKKNYEERLALANQLLAPSNSY 582
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 111/211 (52%), Gaps = 16/211 (7%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCG-NNYT 182
++ + T ++VK LSV ++ +P TF+SL H +PGGL+D A+G + +PC TCG N+
Sbjct: 14 IEFGFLTTKDVKSLSVKRITNPTTFDSLLHPVPGGLHDAALGAFLD--NPCGTCGLTNFL 71
Query: 183 KCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYV 242
C GH GHIELPVPV + F + LL+ C CH++ F+++++L+ G V
Sbjct: 72 GCPGHCGHIELPVPVYHLTFIDQLLRLLRGKCAYCHQLKFARVQVNEFVSKLRLIRCGLV 131
Query: 243 TQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQ 302
+A D+ E + NL + DS + H I N Y + ++ A +++
Sbjct: 132 QEANDMHEHI----NLEKGKSSKRTADDSEDEEN-DHDDIISQRNSYV-KKCMKRAGISK 185
Query: 303 VLSRHVKRKCIFCATPINAISYQQRKIIKSF 333
+R V+ K AIS +R+++K F
Sbjct: 186 HDARSVREKN-------EAISDARRQVVKEF 209
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 60/100 (60%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IGVP FA LTYP PVT N L++ VINGP+ +PGA+ I+
Sbjct: 492 FAARSVISPDPNIETNEIGVPPVFAVKLTYPEPVTNHNFYDLKEAVINGPDKWPGAHAIE 551
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI 113
NE G ++ + +R +LA +L+ P + +K+
Sbjct: 552 NEFGQIISLKKKNYEERLALANQLLAPSNSYSNGAKNKKV 591
>gi|452820032|gb|EME27080.1| DNA-directed RNA polymerase I subunit A1 [Galdieria sulphuraria]
Length = 2200
Score = 175 bits (444), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 150/563 (26%), Positives = 244/563 (43%), Gaps = 101/563 (17%)
Query: 134 VKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISER-GDPCTTCGNNYTKCKGHIGHIE 192
+++LSV +++SP+ F+SL + GGLYD A+G + C TC Y C GH GHIE
Sbjct: 529 IRKLSVRQIYSPVAFDSLQRPVRGGLYDPALGVLDRSVTKLCATCHLGYADCPGHFGHIE 588
Query: 193 LPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDA------------- 239
L +PV++ + F + +L+ C+ CH + ++ LFI +++ L
Sbjct: 589 LALPVVHPVLFPLLIKVLRAKCWYCHHFRLGTRTKKLFIAKLRFLFCNEWEKAEEVDEIM 648
Query: 240 GYVTQAKDL---------------EETLFNEENLRLHPA--------------------- 263
G ++ A D EETL N+ NL + A
Sbjct: 649 GMLSSADDQKKQHDRLSEEGEQQNEETLMNDTNLEVEVASGLSSSFSSMESRIESQIKAR 708
Query: 264 --QLVQLVDSHVQSILAHGTKICDINDYKGG-EELRSAFVAQVL-SRHVKRKCIFCATPI 319
QL + + +S + + I Y LR + L S KC C
Sbjct: 709 EEQLCEEAYAVWKSFMKKHSTRKAIQSYSSNCALLRKRTTEEFLASNESLGKCQNCGHSS 768
Query: 320 NAISYQQRKIIKSFKIDKDN--LDQSLDKSLNKSSNQIIRKREQGY----------VMAS 367
I ++ K+ + K +++ +D + +S + ++ I +R+ Y +
Sbjct: 769 VVIRREESKVFRILKKSQESEQVDILVSQSRKEETSHI--ERDSSYQETHSVNKKLISTI 826
Query: 368 EVEADFKKLWTNEHLFLKCL--IPVLDTTKEL---------IATDIMFIRSLVVPPNNLR 416
E+E +L+ E ++ L + ++ T + + FIR L V P R
Sbjct: 827 ELEQQLSRLYQIEMECIQVLWEMDAINQTNDSEQQQNNNNETVDSVFFIRCLAVSPCRFR 886
Query: 417 PLSM----EQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTL 472
P + EQ+ +EH +N IL L I + +E S +LS + I
Sbjct: 887 PPATFSEGEQLLVMEHPQNVFLTRILQINQQL---IQLKEQQESSSILSPIQQMI----- 938
Query: 473 NNKLQNSWHELQYNVDLLMD-AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNF 531
LQ+ V+ L D ++ + G G++Q L+ K G+ R MMGKRVN
Sbjct: 939 ---------ALQHAVNQLYDCSRGGVGANAGTTTGTGIRQQLEHKEGLFRMYMMGKRVNH 989
Query: 532 AGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQN 591
+ RSVI+PDP+L +GVP FA LT+P P+ +N+ LRK +I G YPGA I++
Sbjct: 990 SARSVISPDPFLETCEVGVPESFAMKLTFPEPINFYNIEYLRKAIIRGSTEYPGATGIED 1049
Query: 592 EDGSVVRISSSQAVQRESLAKRL 614
G+V+ + QR++ A L
Sbjct: 1050 RMGNVIDFLRAPEHQRKAQAMSL 1072
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 49/81 (60%)
Query: 17 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 76
RSVI+PDP+L +GVP FA LT+P P+ +N+ LRK +I G YPGA I++
Sbjct: 992 RSVISPDPFLETCEVGVPESFAMKLTFPEPINFYNIEYLRKAIIRGSTEYPGATGIEDRM 1051
Query: 77 GSVVRISSSQAVQRESLAKRL 97
G+V+ + QR++ A L
Sbjct: 1052 GNVIDFLRAPEHQRKAQAMSL 1072
>gi|361125598|gb|EHK97632.1| putative DNA-directed RNA polymerase I subunit rpa1 [Glarea
lozoyensis 74030]
Length = 1558
Score = 175 bits (443), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 109/277 (39%), Positives = 156/277 (56%), Gaps = 16/277 (5%)
Query: 350 KSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKE--LIATDIMFIRS 407
+SS + Q Y EV+A+ L+ NE L + T K+ +++ D+ F+++
Sbjct: 217 RSSKSKVAATPQIYCNPMEVKAELILLFENEQEILSLVYNSRSTVKKAAVVSPDMFFMQT 276
Query: 408 LVVPPNNLRPLSMEQMPPV-EHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKG 466
L+VPPN RP + + E+ +N LY+SIL C ++++ E + L E
Sbjct: 277 LLVPPNKFRPEAKTGAGEITENPQNTLYKSILRGC-----LLVSQIYDEVNGLTEETPYR 331
Query: 467 IR--GDTLNNKLQNSWHELQYNVDLLMDAKLN-INKTTGAHQIDGLKQMLDGKTGMIRQN 523
IR GD LQ SW LQ V+ L+D N I G DG+KQ L+ K G+ R+N
Sbjct: 332 IRDFGD-----LQESWAGLQDAVNSLIDRDRNPIQGAAGKKNEDGIKQKLEKKEGLFRKN 386
Query: 524 MMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVY 583
MMGKRVNFA RSVI+PDP + + IGVP FAK LTYP PVT N L++ VINGP+++
Sbjct: 387 MMGKRVNFAARSVISPDPNIETNEIGVPPVFAKKLTYPEPVTSHNFKELQQAVINGPDIW 446
Query: 584 PGANMIQNEDGSVVRISSSQAVQRESLAKRLITPEGN 620
PGA I+NE G V+ ++ +R +LA +L+ P N
Sbjct: 447 PGAQAIENEHGQVISLTIKTPDERLALANQLLAPSNN 483
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 63/100 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IGVP FAK LTYP PVT N L++ VINGP+++PGA I+
Sbjct: 394 FAARSVISPDPNIETNEIGVPPVFAKKLTYPEPVTSHNFKELQQAVINGPDIWPGAQAIE 453
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI 113
NE G V+ ++ +R +LA +L+ P + + +K+
Sbjct: 454 NEHGQVISLTIKTPDERLALANQLLAPSNNRANGSRNKKV 493
>gi|303389110|ref|XP_003072788.1| DNA-directed RNA polymerase subunit alpha [Encephalitozoon
intestinalis ATCC 50506]
gi|303301930|gb|ADM11428.1| DNA-directed RNA polymerase subunit alpha [Encephalitozoon
intestinalis ATCC 50506]
Length = 1393
Score = 175 bits (443), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 147/497 (29%), Positives = 230/497 (46%), Gaps = 71/497 (14%)
Query: 121 PEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNN 180
P+ + Y+++E++Q S + V P TF+ GH + GGLYDL MGP+ + C TC +
Sbjct: 7 PKKISFGVYSEKEIEQASCMDVTEPSTFDKFGHPVRGGLYDLRMGPLDFSSN-CKTCNLS 65
Query: 181 YTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAG 240
C GH G I+L PV N +FF + L++ CF C I +L+ + LL G
Sbjct: 66 LLNCPGHFGRIKLFKPVFNPIFFDSLLSLVRCCCFQCRHFRITNYDRLIMFCKFSLLRNG 125
Query: 241 YVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFV 300
+ L+E E +L +V V+S + + D K E +R F
Sbjct: 126 --EEIDGLDELYATSEE-----EELYSVVSKRVES--SRKNRPGPPTD-KYQEMVRHFFS 175
Query: 301 AQVLSRHVKRKCIFCATPINAISYQQR--KIIKSFKIDKDNLDQSLDKSLNKSSNQIIRK 358
S + K+KC+ C N Y+ KI+KS + D +N + D L
Sbjct: 176 ----SINSKKKCVRCGHA-NPKIYKGTNIKILKSLQRDDENSENEKDSEL---------- 220
Query: 359 REQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPL 418
+ + + L++NE LI + +TK+ ++ F+ S+ V PN RP+
Sbjct: 221 -----LFPDFIRELVEDLFSNE----ADLIGSIFSTKD---PNMFFLTSIPVTPNRFRPV 268
Query: 419 SMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQN 478
S + + + IL ++E +K K +
Sbjct: 269 SFLNEKKAPNPQTFSFNDIL--------------------TINELVK---------KDLS 299
Query: 479 SWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
W ELQ V D + G G KQ+L+ K G+ R+N+MGKRVNFA R+VI+
Sbjct: 300 YWPELQGAVLSSFDNSNLRKRNIGLITPPGHKQILEKKEGLFRKNIMGKRVNFAARTVIS 359
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVR 598
PDP L IGVP FA+ LT+P VT +NV+ L+K ++NG + YPG+ +Q+ D ++
Sbjct: 360 PDPNLETREIGVPFVFAEVLTFPERVTSFNVSKLKKAIVNG-STYPGSLYLQDGD-VMLS 417
Query: 599 ISSSQAVQRESLAKRLI 615
+S +R +LA +L+
Sbjct: 418 LSHMPDEKRFALANQLL 434
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 55/85 (64%), Gaps = 2/85 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L IGVP FA+ LT+P VT +NV+ L+K ++NG + YPG+ +Q
Sbjct: 352 FAARTVISPDPNLETREIGVPFVFAEVLTFPERVTSFNVSKLKKAIVNG-STYPGSLYLQ 410
Query: 74 NEDGSVVRISSSQAVQRESLAKRLI 98
+ D ++ +S +R +LA +L+
Sbjct: 411 DGD-VMLSLSHMPDEKRFALANQLL 434
>gi|123497254|ref|XP_001327143.1| RNA polymerase Rpb1, domain 2 family protein [Trichomonas vaginalis
G3]
gi|121910068|gb|EAY14920.1| RNA polymerase Rpb1, domain 2 family protein [Trichomonas vaginalis
G3]
Length = 594
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 133/493 (26%), Positives = 226/493 (45%), Gaps = 68/493 (13%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E++ SV+ V + F+ G I G+YD +GP +E C CG + C GH
Sbjct: 17 YSKEEIENFSVMPVTATGVFDRQGKPIAEGVYDTHLGP-TEHDQTCPICGQHAWNCPGHF 75
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
G+I+L +PV + L+ + + + C C+ + IP L +N ++L++ G Q +
Sbjct: 76 GNIKLAMPVYHPLYVKQLGRFMGGFCTECNCLRIPKEIMLNVVNALQLIERG---QLVSM 132
Query: 249 EETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRH- 307
+E + P+ + + + ++ I + N Y + R + + L+R
Sbjct: 133 DEVFATSD----EPSSVTEQRQKEINELIEK-LPIIEPNTYT--VQTREKIIKEFLTRAS 185
Query: 308 -VKRKCIFCATPINAISYQQRKIIKSFKIDKDNLD---QSLDKSLNKSSNQIIRKREQGY 363
+ KC C + RKI K D + + S DK+ +E Y
Sbjct: 186 GYRMKCANCM-------HDNRKI----KFDNFHFEFVVVSSDKT-----------QEPKY 223
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQM 423
V E+ + + LF +T D FI ++ V P RP+S+
Sbjct: 224 VPIGEIRDKLNQFYKGNKLFF-------NTFFNQTGPDFFFIDTVCVTPPKFRPMSVLGD 276
Query: 424 PPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHEL 483
H + Y ++ K+ I +K E+ D ++++ ++L
Sbjct: 277 KINAHPTSSGYVEVI------KTNINLLKLLEKPD--------------PDQIRAEHNKL 316
Query: 484 QYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYL 543
Q NV L+D+ LN + +G++Q+L+ K G+ R+N+MGKRVNF+ RSVI PDPY+
Sbjct: 317 QTNVSTLIDSTLN---KSSKKVPNGIRQVLEKKEGVFRKNLMGKRVNFSARSVIAPDPYV 373
Query: 544 NIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQ 603
D +GVP FAKTL+YP V +N L K ++NG + YPGAN+I + G ++ +
Sbjct: 374 ATDEVGVPEVFAKTLSYPERVRDYNKERLSKAILNGADNYPGANLIIDPYGQTFQLKGMK 433
Query: 604 AVQRESLAKRLIT 616
R+S A ++
Sbjct: 434 ESLRQSYASKIFA 446
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 52/89 (58%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI PDPY+ D +GVP FAKTL+YP V +N L K ++NG + YPGAN+I
Sbjct: 361 FSARSVIAPDPYVATDEVGVPEVFAKTLSYPERVRDYNKERLSKAILNGADNYPGANLII 420
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPED 102
+ G ++ + R+S A ++ D
Sbjct: 421 DPYGQTFQLKGMKESLRQSYASKIFAESD 449
>gi|209875909|ref|XP_002139397.1| DNA-directed RNA polymerase I largest subunit [Cryptosporidium
muris RN66]
gi|209555003|gb|EEA05048.1| DNA-directed RNA polymerase I largest subunit, putative
[Cryptosporidium muris RN66]
Length = 1981
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 163/536 (30%), Positives = 252/536 (47%), Gaps = 75/536 (13%)
Query: 133 EVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIE 192
EVK++SV + S ITF S G GGL+D +MGP+ R D CTTCG ++C GHIGHIE
Sbjct: 22 EVKKISVCHIVSSITFESTGDAKRGGLHDPSMGPLDIR-DFCTTCGGR-SECPGHIGHIE 79
Query: 193 LPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLL-DAGYV--------- 242
L +PV + L+ R + LLK C+ C + I + +I ++ LL ++ Y
Sbjct: 80 LELPVYHPLYIRQLVNLLKSICWHCCTLRICQDTCKDYIKRLFLLKESRYTDNKHFLSDG 139
Query: 243 -----TQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGE---- 293
T+ D L + N +L+ + VD +IL + DI + +
Sbjct: 140 RATTHTEYADNCSKLICDSNSQLNQPSNILSVDERA-NILPNDD--IDIRTFISSDGYTL 196
Query: 294 ELRSAFVAQVLSRHVKRK-CIFCATPINAISYQQRKIIK--------------------- 331
EL + ++ + +K+K C C A + + I
Sbjct: 197 ELWNNLRSEFFDKAIKQKACSNCGKSFRATVKESQLSIGITLSWPESSKSPIGLGSTWGN 256
Query: 332 ------SFKIDKDNLDQSLDKSL--NKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLF 383
KI+ D + D++ K +I + Q + +V KKLW N
Sbjct: 257 YNLKEGQIKIEDDFSSEVPDQAKIHTKKGQSLISQHFQAF----QVVPILKKLWENNEKI 312
Query: 384 LKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSM--EQMPPVEHSRNKLYQSILYSC 441
L+ L P+ ++E I+ ++ F+ + VP N RPL + P+ H R IL +
Sbjct: 313 LEFLFPM---SRE-ISWEMFFMFVIPVPANKFRPLGALGGRNIPLLHPRTSALLDILVAN 368
Query: 442 GSLKSVI-MAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKT 500
L+ I + +NK++S I G + + L + LQ V+ +D +
Sbjct: 369 ERLRFYIDLQRQNKDKS------TDDIGGSSSQSGLLSYVSSLQERVNSYLDKNKSFKP- 421
Query: 501 TGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTY 560
A G++Q L+ KTG+IRQ MMGKRVN++ R+VI PDPYL + IG+PL FA+ LT
Sbjct: 422 --ASTPPGIRQWLERKTGVIRQKMMGKRVNYSARTVIGPDPYLETNEIGIPLMFARNLTI 479
Query: 561 PVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLIT 616
P V NV ++ K+V NG + YPGA +Q DG++ +S QR S +K L++
Sbjct: 480 PEYVGTHNVLIMCKLVENGTDHYPGATKLQ-LDGTLYDLSRLNISQRISKSKLLLS 534
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ R+VI PDPYL + IG+PL FA+ LT P V NV ++ K+V NG + YPGA +Q
Sbjct: 450 YSARTVIGPDPYLETNEIGIPLMFARNLTIPEYVGTHNVLIMCKLVENGTDHYPGATKLQ 509
Query: 74 NEDGSVVRISSSQAVQRESLAKRLIT 99
DG++ +S QR S +K L++
Sbjct: 510 -LDGTLYDLSRLNISQRISKSKLLLS 534
>gi|406608115|emb|CCH40549.1| DNA-directed RNA polymerase I subunit A1 [Wickerhamomyces ciferrii]
Length = 1632
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 102/265 (38%), Positives = 151/265 (56%), Gaps = 7/265 (2%)
Query: 358 KREQG--YVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNL 415
KR G YV++SEV + L+ EH L + E +++DI F++++VVPP
Sbjct: 278 KRTTGSKYVLSSEVRNIMRALFKKEHNIFHYLFHSRPRSTEKVSSDIFFLQAVVVPPTRF 337
Query: 416 RPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNK 475
R S E+S+N+L IL + S+++ N + S + + + N+
Sbjct: 338 RLPSKLGEEVHENSQNELLSKILNT-----SLLIRDLNDQISTVQKDQITVEERKITFNR 392
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRS 535
L N++ +Q +V+ +D+ N N G+KQ L+ K G+ R++MMGKRVN+A RS
Sbjct: 393 LMNAFVTIQNDVNAFIDSTKNQNANAARTAAPGIKQALEKKEGLFRKHMMGKRVNYAARS 452
Query: 536 VITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGS 595
VI+PDP + + IGVP FA LTYP PVT N LR+ VINGP+ +PGA IQNEDGS
Sbjct: 453 VISPDPNIETNEIGVPPVFAVKLTYPEPVTSHNAGELRQAVINGPDKWPGATQIQNEDGS 512
Query: 596 VVRISSSQAVQRESLAKRLITPEGN 620
+V + QR++LA +L+TP GN
Sbjct: 513 LVSLIGMTTDQRKALANQLLTPSGN 537
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 66/109 (60%), Gaps = 2/109 (1%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHI 191
+E+++LS ++ +P F++LGH I GGLYDLA+G + C+TCG + C GH GHI
Sbjct: 22 EEIRKLSAKQITNPTVFDNLGHPISGGLYDLALGAFLR--NLCSTCGLDDKFCPGHQGHI 79
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAG 240
ELP+PV N LFF + + L+ +C CH + + ++KL+ G
Sbjct: 80 ELPIPVYNPLFFNQLYIFLRSACLYCHNFRLRTIETHRYACKLKLIQYG 128
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 59/87 (67%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP + + IGVP FA LTYP PVT N LR+ VINGP+ +PGA IQ
Sbjct: 448 YAARSVISPDPNIETNEIGVPPVFAVKLTYPEPVTSHNAGELRQAVINGPDKWPGATQIQ 507
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS+V + QR++LA +L+TP
Sbjct: 508 NEDGSLVSLIGMTTDQRKALANQLLTP 534
>gi|451853513|gb|EMD66807.1| hypothetical protein COCSADRAFT_35290 [Cochliobolus sativus ND90Pr]
Length = 1781
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 159/290 (54%), Gaps = 18/290 (6%)
Query: 342 QSLDKSLNKSSNQIIRKRE--------QGYVMASEVEADFKKLWTNEHLFLKCLI-PVLD 392
Q D SL + ++ RK + Q YV ++EV+A L+ +E ++ L P
Sbjct: 301 QQTDGSLVATEARMARKAKTDDTLEAAQEYVNSTEVKAAMTLLFESESEMMRLLYSPYGS 360
Query: 393 TTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMK 452
+ ++ D+ F ++++VPPN RP E S+NKLY+ IL +C S++ + M+
Sbjct: 361 KSLVDVSADMFFTQAIIVPPNKFRPEDKTGDSIAESSKNKLYKGILEACESIRQISQEMQ 420
Query: 453 NKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGA-HQIDGLKQ 511
K G R ++ +Q + LQ V+ L+D N + GA DG+KQ
Sbjct: 421 GKPNE-------LGFRQRNFDD-MQTQFVNLQGAVNALIDRDANPVQGRGAVTNADGIKQ 472
Query: 512 MLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTL 571
L+ K G+ R+NMMGKRVNFA RSVI+PDP + + IGVP FA LTYP PVT N
Sbjct: 473 GLEKKEGLFRKNMMGKRVNFAARSVISPDPNIETNEIGVPPVFAVKLTYPEPVTNHNFYD 532
Query: 572 LRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPEGNY 621
L++ V+NGP+ +PGA+ I+NE G ++ + +R +LA +L+ P +Y
Sbjct: 533 LKEAVLNGPDKWPGAHAIENEFGQIISLKKKNYEERLALANQLLAPSNSY 582
Score = 109 bits (272), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 111/211 (52%), Gaps = 16/211 (7%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCG-NNYT 182
++ + T ++VK LSV ++ +P TF+SL H +PGGL+D A+G + +PC TCG N+
Sbjct: 14 IEFGFLTTKDVKSLSVKRITNPTTFDSLLHPVPGGLHDAALGAFLD--NPCGTCGLTNFL 71
Query: 183 KCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYV 242
C GH GHIELPVPV + F + LL+ C CH++ F+++++L+ G V
Sbjct: 72 GCPGHCGHIELPVPVYHLTFIDQLLRLLRGKCAYCHQLKFARVQVNEFVSKLRLIRCGLV 131
Query: 243 TQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQ 302
+A D+ E + NL + DS + H I N Y + ++ A +++
Sbjct: 132 QEANDMHEHI----NLEKGKSSKRTADDSEDEDN-DHDDIISQRNSYV-KKCMKRAGISK 185
Query: 303 VLSRHVKRKCIFCATPINAISYQQRKIIKSF 333
+R V+ K AIS +R+++K F
Sbjct: 186 HDARSVREKN-------EAISDARRQVVKEF 209
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 60/100 (60%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IGVP FA LTYP PVT N L++ V+NGP+ +PGA+ I+
Sbjct: 492 FAARSVISPDPNIETNEIGVPPVFAVKLTYPEPVTNHNFYDLKEAVLNGPDKWPGAHAIE 551
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI 113
NE G ++ + +R +LA +L+ P + +K+
Sbjct: 552 NEFGQIISLKKKNYEERLALANQLLAPSNSYSNGAKNKKV 591
>gi|402584966|gb|EJW78907.1| hypothetical protein WUBG_10184 [Wuchereria bancrofti]
Length = 610
Score = 171 bits (434), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 99/279 (35%), Positives = 159/279 (56%), Gaps = 13/279 (4%)
Query: 347 SLNKSSNQIIRKREQGYVMA---------SEVEADFKKLWTNEHLFLKCLIPVLDTTKEL 397
SL +S QI+R + Q + +EV F+ LW N+ LK + PV D+ +
Sbjct: 17 SLGSTSEQILRDQMQCVLRGNCDKLAWRGAEVREHFRILWQNDGPLLKKVFPVFDSENDR 76
Query: 398 -IATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQ 456
DI+F +++VPP RP+ + + E+ ++ + +L + +++++ +A+ +
Sbjct: 77 HCPLDILFCEAVLVPPTKYRPVRIFKGDKFENPQSVNLRKLLEASETIRAIRLALSGNSE 136
Query: 457 SDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAH-QIDGLKQMLDG 515
+L+ + + G T+ K+ N++ LQ + + D +++K T Q+ G+KQ+L+
Sbjct: 137 KAVLNLVSENVLGQTMQAKMHNAYLALQQRMGAIFDQ--DLDKWTDVRIQVPGIKQILEK 194
Query: 516 KTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKM 575
K G+ R NMMGKRVNFA RSVITPDPYL+ID IG+P FAK LT V N+ LRKM
Sbjct: 195 KQGLFRMNMMGKRVNFACRSVITPDPYLDIDEIGIPELFAKKLTVTESVNALNLVRLRKM 254
Query: 576 VINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRL 614
+ NGPN +PGAN IQ +S ++ +R++ AKRL
Sbjct: 255 IKNGPNFHPGANFIQKPGRYTQVLSVNKRNERDAAAKRL 293
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 54/84 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVITPDPYL+ID IG+P FAK LT V N+ LRKM+ NGPN +PGAN IQ
Sbjct: 210 FACRSVITPDPYLDIDEIGIPELFAKKLTVTESVNALNLVRLRKMIKNGPNFHPGANFIQ 269
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+S ++ +R++ AKRL
Sbjct: 270 KPGRYTQVLSVNKRNERDAAAKRL 293
>gi|189191780|ref|XP_001932229.1| DNA-directed RNA polymerase I subunit RPA1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187973835|gb|EDU41334.1| DNA-directed RNA polymerase I subunit RPA1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 1790
Score = 171 bits (434), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 102/291 (35%), Positives = 159/291 (54%), Gaps = 19/291 (6%)
Query: 342 QSLDKSLNKSSNQIIRKRE---------QGYVMASEVEADFKKLWTNEHLFLKCLI-PVL 391
Q D SL + +++ R+ + Q YV A+EV+A L+ NE ++ L P
Sbjct: 301 QQADGSLVATESRMARRTKPATEESENAQEYVSAAEVKATMTLLFENESEMMRMLYSPYG 360
Query: 392 DTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAM 451
+ ++ D+ F ++++VPPN RP E +NK Y+SI+ +C ++ + M
Sbjct: 361 SKSLVDVSPDMFFTQAIIVPPNKYRPEDGTGETITESPKNKPYKSIIEACETINQISHEM 420
Query: 452 KNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLN-INKTTGAHQIDGLK 510
+ + G R ++ +Q + LQ V+ L+D N + GA DG+K
Sbjct: 421 RGRPNE-------TGYRQRNFDD-MQTQFVNLQGVVNALIDCDANPVQGRAGAVNTDGIK 472
Query: 511 QMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVT 570
Q L+ K G+ R+NMMGKRVNFA RSVI+PDP + + IGVP FAK LTYP PVT N
Sbjct: 473 QALEKKEGLFRKNMMGKRVNFAARSVISPDPNIETNEIGVPPVFAKKLTYPEPVTNHNFY 532
Query: 571 LLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPEGNY 621
L++ V+NGP+ +PGA+ I+NE G ++ + +R +LA +L+ P +Y
Sbjct: 533 DLKEAVLNGPDKWPGAHAIENEFGQIIALRKKTYDERLALANQLLAPTNSY 583
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 77/126 (61%), Gaps = 3/126 (2%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCG-NNYT 182
++ + T +++K LSV ++ P TF+S+ H +PGGL+D A+G + +PC TCG +
Sbjct: 14 VEFGFLTTKDIKALSVKRISIPTTFDSINHPVPGGLHDPALGAFLD--NPCATCGLTTFL 71
Query: 183 KCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYV 242
C GH GHIELPVPV + F + LL+ +C CH + T+ F+++++L+ G V
Sbjct: 72 GCPGHCGHIELPVPVYHLTFMDQLLRLLRGTCAYCHHTKLARTTINEFVSKLRLIRCGLV 131
Query: 243 TQAKDL 248
+A D+
Sbjct: 132 QEANDM 137
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 61/100 (61%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IGVP FAK LTYP PVT N L++ V+NGP+ +PGA+ I+
Sbjct: 493 FAARSVISPDPNIETNEIGVPPVFAKKLTYPEPVTNHNFYDLKEAVLNGPDKWPGAHAIE 552
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI 113
NE G ++ + +R +LA +L+ P + +K+
Sbjct: 553 NEFGQIIALRKKTYDERLALANQLLAPTNSYSNGARNKKV 592
>gi|388581035|gb|EIM21346.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Wallemia sebi CBS 633.66]
Length = 1746
Score = 171 bits (434), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 107/282 (37%), Positives = 158/282 (56%), Gaps = 15/282 (5%)
Query: 349 NKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDT--TKELIATDIMFIR 406
N +N + KR + V ASEV+A +L+TNE + T E +A DI F+
Sbjct: 335 NNKNNAALLKRSERVVPASEVQAHLHRLFTNEKELTSMIFSRHGPFPTNEAMA-DIFFMS 393
Query: 407 SLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSV---IMAMKNKE-------Q 456
++ VPP RP + +EH +N+L ++L + ++ + A+ +K+
Sbjct: 394 AIPVPPTRFRPAARMGDALMEHPQNELLGAVLQTSLRIRDYNNEMSALNDKDYAQTMAAN 453
Query: 457 SDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKT-TGAHQIDGLKQMLDG 515
S L +K IR D +L LQ+ ++ +D+ N + G G+KQ+L+
Sbjct: 454 SSLGENGIKIIR-DRTYQRLLEELITLQHGINSFIDSSKNPARLPQGREPTPGVKQVLEK 512
Query: 516 KTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKM 575
K G+ R++MMGKRVN+A RSVI+PD + IGVP FAKTLTYP PVTP+NV+ LRK+
Sbjct: 513 KEGLFRKHMMGKRVNYAARSVISPDVNIETSEIGVPPVFAKTLTYPEPVTPFNVSYLRKL 572
Query: 576 VINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
VINGP YPGA+MIQ EDG + + QR ++A +L+TP
Sbjct: 573 VINGPKNYPGASMIQYEDGRMESLEKKSQEQRTAIANQLLTP 614
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 51/107 (47%), Positives = 69/107 (64%), Gaps = 3/107 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PD + IGVP FAKTLTYP PVTP+NV+ LRK+VINGP YPGA+MIQ
Sbjct: 528 YAARSVISPDVNIETSEIGVPPVFAKTLTYPEPVTPFNVSYLRKLVINGPKNYPGASMIQ 587
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPE---DQQHRAIMKEKIITRQ 117
EDG + + QR ++A +L+TP D Q++ + I ++
Sbjct: 588 YEDGRMESLEKKSQEQRTAIANQLLTPSNRPDNQNKMTTRTSSINKK 634
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 71/129 (55%), Gaps = 1/129 (0%)
Query: 121 PEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNN 180
P+ + + T E+K++SV ++ +P ++ G GGLYD A+GP S+RGD C TCG
Sbjct: 11 PKSVSFGFLTTDEIKKISVKQIVNPSLLDNTGRPTVGGLYDPALGP-SDRGDICATCGLT 69
Query: 181 YTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAG 240
C GH GHIELP + LFF +L+ C CH + ++ ++ LLD G
Sbjct: 70 SFNCPGHFGHIELPTVNYHPLFFTHCFNMLRGVCLYCHHFKLDPAVVTRYVAKLSLLDYG 129
Query: 241 YVTQAKDLE 249
+ +A+ ++
Sbjct: 130 LIDEAEQVD 138
>gi|255728121|ref|XP_002548986.1| hypothetical protein CTRG_03283 [Candida tropicalis MYA-3404]
gi|240133302|gb|EER32858.1| hypothetical protein CTRG_03283 [Candida tropicalis MYA-3404]
Length = 831
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 100/263 (38%), Positives = 152/263 (57%), Gaps = 5/263 (1%)
Query: 355 IIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNN 414
I K YV+++E+ + L+ E L+ + + ++ DI F +S++VPP
Sbjct: 289 IKHKGGSKYVLSTEIRNILRSLFNKEQHVLQKVFHSRPYQHDHVSGDIFFKQSVLVPPTR 348
Query: 415 LRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNN 474
R S E+++N+L +I+ + SV++ N + S++ + L G L N
Sbjct: 349 FRLPSKLGDEIHENAQNELLSNIIKT-----SVLIRTLNDQISNMYKDKLGGEDKKILFN 403
Query: 475 KLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGR 534
+L N++ LQ +V+ +D+ N N G G+KQ L+ K G+ R++MMGKRVN+A R
Sbjct: 404 RLMNAFVTLQNDVNAFIDSTKNQNAPAGKVPNPGIKQALEKKEGLFRKHMMGKRVNYAAR 463
Query: 535 SVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDG 594
SVI+PDP L + IGVP FA LTYP PVT +N LR+ VINGP+ +PGA IQNEDG
Sbjct: 464 SVISPDPNLETNEIGVPPVFATKLTYPEPVTSYNAAELRQAVINGPDTWPGAIQIQNEDG 523
Query: 595 SVVRISSSQAVQRESLAKRLITP 617
S+V + QR++LA +L+TP
Sbjct: 524 SLVSLVGMTLEQRKALANQLLTP 546
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 74/123 (60%), Gaps = 2/123 (1%)
Query: 130 TDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+D E+++LS ++ +PI F++LGH I GGLYDL++G + CTTCG + C GH+G
Sbjct: 20 SDDEIRKLSAKQITNPIVFDNLGHPINGGLYDLSLGAFLR--NVCTTCGLDEKFCPGHMG 77
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLE 249
HIELPVPV N +FF + + L+ +C CH + + ++ L+ G + + +L+
Sbjct: 78 HIELPVPVYNPMFFNQLYIFLRSACLYCHNFKLNQVEVHKYQCKLHLIQYGLLLECVELD 137
Query: 250 ETL 252
L
Sbjct: 138 NIL 140
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/89 (52%), Positives = 61/89 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP L + IGVP FA LTYP PVT +N LR+ VINGP+ +PGA IQ
Sbjct: 460 YAARSVISPDPNLETNEIGVPPVFATKLTYPEPVTSYNAAELRQAVINGPDTWPGAIQIQ 519
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPED 102
NEDGS+V + QR++LA +L+TP +
Sbjct: 520 NEDGSLVSLVGMTLEQRKALANQLLTPSN 548
>gi|256073012|ref|XP_002572827.1| DNA-directed RNA polymerase I [Schistosoma mansoni]
Length = 1784
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 152/564 (26%), Positives = 253/564 (44%), Gaps = 91/564 (16%)
Query: 120 VPEILKLKY--YTDQEVKQLSVVKVFSPITFNSL-GHTIPGGLYDLAMGPISERGDPCTT 176
V +I+ L+Y Y+ EV++LSV KV + + F+ G + GGL+D+ G I + C
Sbjct: 6 VGQIVGLRYGFYSSDEVRRLSVRKVTNDLAFDKFTGRGVDGGLHDVNFGVIG-YSETCAH 64
Query: 177 CGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKL 236
CG ++T C GH GHIE PV N F + ++K CF C ++ S + + L
Sbjct: 65 CGMDFTDCPGHCGHIEFSKPVFNPFMFDVLYKIVKSFCFGCFRL----YSAEYLASALYL 120
Query: 237 LDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELR 296
L A V + +TL +E L L Q+ ++ + K+C +
Sbjct: 121 LGAP-VGKLPGKLKTLEIKELEGLSGDDLRQVAIRNLATRPRAPCKLCGSGSWG------ 173
Query: 297 SAFVAQVLSRHV-KRKCIFCATPINAISYQQRK-------------IIKSFKIDKDNLDQ 342
RH+ K++ +F PI+ + + K +++ K+D ++Q
Sbjct: 174 --------LRHISKQQLVF--HPISIVGSNRSKARMKEELEEDCSDLLEGCKVDDQRMEQ 223
Query: 343 SLDKSLNKSSNQIIRKREQGYV--------MASE-----------------VEADFKKLW 377
+L ++ S K E Y M SE + + LW
Sbjct: 224 NLSLFIDMSDGSEASKAEAVYTANLSTARNMLSEAIKSQQHSKEICFPPEMIRVMLRCLW 283
Query: 378 TNEHLFLKCLIPVLDTTK--ELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQ 435
++ L L P+L + TD+ F+ ++++ P+ R EH +Y
Sbjct: 284 AHDGDLLVLLFPMLQAARLNHTFPTDVFFMDNVLLSPSLCRWPRHVGNLVYEHPETAVYV 343
Query: 436 SILYSCGSLKSVIMAMKNKEQSDLLSEALKGIR-------GDTLNNKLQNSWHEL----- 483
I+ L +++ ++ + + K + GD +++ + +L
Sbjct: 344 RIVKRAQCLHNIVEFIRQHNEVSNSVDVNKPVEPKSTTSNGDLIDDAQSDGALKLATVLL 403
Query: 484 QYNVDLLMDAKLNINK---------TTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGR 534
Q V+ + D + I ++ + ++ GL+Q L+ K G+ R +MMGKRVNFA R
Sbjct: 404 QAAVNGIYDMNMAITPLGLESRNGISSNSVRLPGLRQRLERKEGLFRMHMMGKRVNFACR 463
Query: 535 SVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDG 594
SVI+PDP L++ +GVPL FA LT+P PVT +N+ LR++V+NGPN YPGA IQ +G
Sbjct: 464 SVISPDPNLSVTEVGVPLFFAFRLTFPTPVTKFNLVHLRQLVMNGPNNYPGATSIQFSNG 523
Query: 595 SVVRISSSQAVQ----RESLAKRL 614
+ + + Q RE LA RL
Sbjct: 524 VITMLPQNDTPQAKKKREMLALRL 547
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 57/88 (64%), Gaps = 4/88 (4%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP L++ +GVPL FA LT+P PVT +N+ LR++V+NGPN YPGA IQ
Sbjct: 460 FACRSVISPDPNLSVTEVGVPLFFAFRLTFPTPVTKFNLVHLRQLVMNGPNNYPGATSIQ 519
Query: 74 NEDGSVVRISSSQAVQ----RESLAKRL 97
+G + + + Q RE LA RL
Sbjct: 520 FSNGVITMLPQNDTPQAKKKREMLALRL 547
>gi|238878529|gb|EEQ42167.1| DNA-directed RNA polymerase I 190 kDa polypeptide [Candida albicans
WO-1]
Length = 1577
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 96/257 (37%), Positives = 153/257 (59%), Gaps = 5/257 (1%)
Query: 363 YVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQ 422
YV+++EV + L+ E L+ + + I+ D+ F +S++VPP R S
Sbjct: 211 YVLSTEVRNILRSLFHKEQAILQKVFHSRPYQHDPISGDLFFKQSVLVPPTRFRLPSKLG 270
Query: 423 MPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHE 482
E+++N+L +I+ + SV++ N+ +++ E + G + N+L N++
Sbjct: 271 DEIHENAQNELLSNIIKT-----SVLIRDLNERITNMYKEKISGEDKKIIFNRLMNAFVT 325
Query: 483 LQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPY 542
LQ +V+ +D+ N N G G+KQ L+ K G+ R++MMGKRVN+A RSVI+PDP
Sbjct: 326 LQNDVNAFIDSTKNQNAPAGKIPNPGIKQALEKKEGLFRKHMMGKRVNYAARSVISPDPN 385
Query: 543 LNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSS 602
L + IGVP FAK LTYP PVT +N + LR+ VINGP+ +PGA +QNEDGS++ +
Sbjct: 386 LETNEIGVPPVFAKKLTYPEPVTSYNASELRQAVINGPDTWPGAIQVQNEDGSLISLIGM 445
Query: 603 QAVQRESLAKRLITPEG 619
QR+++A +L+TP G
Sbjct: 446 TLEQRKAIANQLLTPNG 462
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 62/87 (71%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP L + IGVP FAK LTYP PVT +N + LR+ VINGP+ +PGA +Q
Sbjct: 374 YAARSVISPDPNLETNEIGVPPVFAKKLTYPEPVTSYNASELRQAVINGPDTWPGAIQVQ 433
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS++ + QR+++A +L+TP
Sbjct: 434 NEDGSLISLIGMTLEQRKAIANQLLTP 460
>gi|360042899|emb|CCD78309.1| putative dna-directed rna polymerase I largest subunit [Schistosoma
mansoni]
Length = 1775
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 152/564 (26%), Positives = 253/564 (44%), Gaps = 91/564 (16%)
Query: 120 VPEILKLKY--YTDQEVKQLSVVKVFSPITFNSL-GHTIPGGLYDLAMGPISERGDPCTT 176
V +I+ L+Y Y+ EV++LSV KV + + F+ G + GGL+D+ G I + C
Sbjct: 6 VGQIVGLRYGFYSSDEVRRLSVRKVTNDLAFDKFTGRGVDGGLHDVNFGVIG-YSETCAH 64
Query: 177 CGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKL 236
CG ++T C GH GHIE PV N F + ++K CF C ++ S + + L
Sbjct: 65 CGMDFTDCPGHCGHIEFSKPVFNPFMFDVLYKIVKSFCFGCFRL----YSAEYLASALYL 120
Query: 237 LDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELR 296
L A V + +TL +E L L Q+ ++ + K+C +
Sbjct: 121 LGAP-VGKLPGKLKTLEIKELEGLSGDDLRQVAIRNLATRPRAPCKLCGSGSWG------ 173
Query: 297 SAFVAQVLSRHV-KRKCIFCATPINAISYQQRK-------------IIKSFKIDKDNLDQ 342
RH+ K++ +F PI+ + + K +++ K+D ++Q
Sbjct: 174 --------LRHISKQQLVF--HPISIVGSNRSKARMKEELEEDCSDLLEGCKVDDQRMEQ 223
Query: 343 SLDKSLNKSSNQIIRKREQGYV--------MASE-----------------VEADFKKLW 377
+L ++ S K E Y M SE + + LW
Sbjct: 224 NLSLFIDMSDGSEASKAEAVYTANLSTARNMLSEAIKSQQHSKEICFPPEMIRVMLRCLW 283
Query: 378 TNEHLFLKCLIPVLDTTK--ELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQ 435
++ L L P+L + TD+ F+ ++++ P+ R EH +Y
Sbjct: 284 AHDGDLLVLLFPMLQAARLNHTFPTDVFFMDNVLLSPSLCRWPRHVGNLVYEHPETAVYV 343
Query: 436 SILYSCGSLKSVIMAMKNKEQSDLLSEALKGIR-------GDTLNNKLQNSWHEL----- 483
I+ L +++ ++ + + K + GD +++ + +L
Sbjct: 344 RIVKRAQCLHNIVEFIRQHNEVSNSVDVNKPVEPKSTTSNGDLIDDAQSDGALKLATVLL 403
Query: 484 QYNVDLLMDAKLNINK---------TTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGR 534
Q V+ + D + I ++ + ++ GL+Q L+ K G+ R +MMGKRVNFA R
Sbjct: 404 QAAVNGIYDMNMAITPLGLESRNGISSNSVRLPGLRQRLERKEGLFRMHMMGKRVNFACR 463
Query: 535 SVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDG 594
SVI+PDP L++ +GVPL FA LT+P PVT +N+ LR++V+NGPN YPGA IQ +G
Sbjct: 464 SVISPDPNLSVTEVGVPLFFAFRLTFPTPVTKFNLVHLRQLVMNGPNNYPGATSIQFSNG 523
Query: 595 SVVRISSSQAVQ----RESLAKRL 614
+ + + Q RE LA RL
Sbjct: 524 VITMLPQNDTPQAKKKREMLALRL 547
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 57/88 (64%), Gaps = 4/88 (4%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP L++ +GVPL FA LT+P PVT +N+ LR++V+NGPN YPGA IQ
Sbjct: 460 FACRSVISPDPNLSVTEVGVPLFFAFRLTFPTPVTKFNLVHLRQLVMNGPNNYPGATSIQ 519
Query: 74 NEDGSVVRISSSQAVQ----RESLAKRL 97
+G + + + Q RE LA RL
Sbjct: 520 FSNGVITMLPQNDTPQAKKKREMLALRL 547
>gi|330927073|ref|XP_003301728.1| hypothetical protein PTT_13304 [Pyrenophora teres f. teres 0-1]
gi|311323320|gb|EFQ90175.1| hypothetical protein PTT_13304 [Pyrenophora teres f. teres 0-1]
Length = 1797
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 104/291 (35%), Positives = 162/291 (55%), Gaps = 19/291 (6%)
Query: 342 QSLDKSLNKSSNQIIRKRE---------QGYVMASEVEADFKKLWTNEHLFLKCLI-PVL 391
Q D SL + +++ R+ + Q YV A+EV+A L+ NE ++ L P
Sbjct: 299 QQADGSLVATESRMARRTKPATEESENAQEYVSAAEVKAIMTLLFENESEMMRMLYSPYG 358
Query: 392 DTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAM 451
+ ++ D+ F ++++VPPN RP E +NK Y+SI+ +C ++ + M
Sbjct: 359 SKSLVDVSPDMFFTQAIIVPPNKYRPEDGTGETITESPKNKPYKSIIEACETIDQISHEM 418
Query: 452 KNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLN-INKTTGAHQIDGLK 510
+ + +EA G R ++ +Q + LQ V+ L+D N + GA DG+K
Sbjct: 419 RGRP-----NEA--GYRQRNFDD-MQTQFVNLQGVVNALIDCDANPVQGRAGALNTDGIK 470
Query: 511 QMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVT 570
Q L+ K G+ R+NMMGKRVNFA RSVI+PDP + + IGVP FAK LTYP PVT N
Sbjct: 471 QALEKKEGLFRKNMMGKRVNFAARSVISPDPNIETNEIGVPPVFAKKLTYPEPVTNHNFY 530
Query: 571 LLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPEGNY 621
L++ V+NGP+ +PGA+ I+NE G ++ + +R +LA +L+ P +Y
Sbjct: 531 DLKEAVLNGPDKWPGAHAIENEFGQIIALRKKTYDERLALANQLLAPTNSY 581
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 78/126 (61%), Gaps = 3/126 (2%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCG-NNYT 182
++ + T +++K LSV ++ +PITF++ H +PGGL+D A+G + +PC TCG +
Sbjct: 14 VEFGFLTTKDIKALSVKRISNPITFDTTYHPVPGGLHDPALGAFLD--NPCATCGLTTFL 71
Query: 183 KCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYV 242
C GH GHIELPVPV + F + LL+ +C CH + T+ F+++++L+ G V
Sbjct: 72 GCPGHCGHIELPVPVYHLTFMDQLLRLLRGTCAYCHHTKLARTTINEFVSKLRLIRCGLV 131
Query: 243 TQAKDL 248
+A D+
Sbjct: 132 QEANDM 137
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 61/100 (61%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IGVP FAK LTYP PVT N L++ V+NGP+ +PGA+ I+
Sbjct: 491 FAARSVISPDPNIETNEIGVPPVFAKKLTYPEPVTNHNFYDLKEAVLNGPDKWPGAHAIE 550
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI 113
NE G ++ + +R +LA +L+ P + +K+
Sbjct: 551 NEFGQIIALRKKTYDERLALANQLLAPTNSYSNGARNKKV 590
>gi|396499355|ref|XP_003845454.1| similar to DNA-directed RNA polymerase I subunit [Leptosphaeria
maculans JN3]
gi|312222035|emb|CBY01975.1| similar to DNA-directed RNA polymerase I subunit [Leptosphaeria
maculans JN3]
Length = 1707
Score = 168 bits (426), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 159/298 (53%), Gaps = 20/298 (6%)
Query: 335 IDKDNLDQSLDKSLNKSSNQIIRK---------REQGYVMASEVEADFKKLWTNEHLFLK 385
ID D++ Q D SL + ++ ++ Q Y+ A+EV A L+ +E ++
Sbjct: 295 IDLDDM-QEADGSLVATESRTTKRSGTAVDSGDNAQEYITAAEVRAAMVLLFEHESEMVR 353
Query: 386 CLI-PVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSL 444
L P + + D+ F+ +++VPPN R E +N LY++IL +C S+
Sbjct: 354 LLYSPYGSKSLVDVTADMFFMEAIIVPPNRYRLEDKTGDSIAESPKNSLYKAILNACESM 413
Query: 445 KSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLN-INKTTGA 503
+ + MK + G R ++ LQ W LQ +V+ L+D N + A
Sbjct: 414 RQISNEMKGQANE-------GGYRQRNFDD-LQTQWVTLQGSVNALIDRDANPVQGRAAA 465
Query: 504 HQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVP 563
DG+KQ L+ K G+ R+NMMGKRVNFA RSVI+PDP + + IGVP FA LTYP P
Sbjct: 466 TTADGIKQRLEKKEGLFRKNMMGKRVNFAARSVISPDPNIETNEIGVPPVFAMKLTYPEP 525
Query: 564 VTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPEGNY 621
VT N L++ V+NGP+ +PGA+ ++NE G V+ + +R +LA +L+ P +Y
Sbjct: 526 VTNHNFYDLKEAVLNGPDKWPGAHAVENEFGQVILLKKKNYEERLALANQLLAPSSSY 583
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 76/130 (58%), Gaps = 3/130 (2%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCG-NN 180
E ++ + +++ LSV ++ +P TF++L H + GGL+D A+G + +PCTTCG
Sbjct: 12 EGVEFGFLAASDIRALSVKRITNPTTFDTLLHPVAGGLHDAALGAFLD--NPCTTCGLTT 69
Query: 181 YTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAG 240
+ C GH GHIELPVPV + F + LL+ C CH+ + ++++++L+ G
Sbjct: 70 FLGCPGHCGHIELPVPVYHVTFMDQLLRLLRGKCVYCHQFKLARVQINEYVSRLRLIRCG 129
Query: 241 YVTQAKDLEE 250
V +A ++ E
Sbjct: 130 LVREANEMHE 139
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 56/87 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IGVP FA LTYP PVT N L++ V+NGP+ +PGA+ ++
Sbjct: 493 FAARSVISPDPNIETNEIGVPPVFAMKLTYPEPVTNHNFYDLKEAVLNGPDKWPGAHAVE 552
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NE G V+ + +R +LA +L+ P
Sbjct: 553 NEFGQVILLKKKNYEERLALANQLLAP 579
>gi|380492531|emb|CCF34539.1| RNA polymerase Rpb1 [Colletotrichum higginsianum]
Length = 1709
Score = 168 bits (426), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 98/266 (36%), Positives = 149/266 (56%), Gaps = 14/266 (5%)
Query: 360 EQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKEL--IATDIMFIRSLVVPPNNLRP 417
+Q Y+ A EV A ++L+ E + + TTK+ ++ D+ FIR+++VPPN RP
Sbjct: 328 QQRYISAMEVRARLRELFEKEQDIMSLVYSSKPTTKKAAQVSADMFFIRTILVPPNKFRP 387
Query: 418 LSMEQMPPV-EHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKL 476
+ + E +N LY+ I+ +CG++ + ++ +Q G D + L
Sbjct: 388 EARTGDSQISEAQQNSLYKMIMRNCGNIARMHQSVGATDQY--------GRPRDITD--L 437
Query: 477 QNSWHELQYNVDLLMDAKLN-INKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRS 535
W ELQ +V+ L+D N + DG+KQ L+ K G+ R+NMMGKRVNFA RS
Sbjct: 438 HQVWTELQESVNSLIDKSKNPVQGAAAKRNEDGIKQKLEKKEGLFRKNMMGKRVNFAARS 497
Query: 536 VITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGS 595
VI+PDP + + IGVP FA+ LTYP PVT N +++ VING + +PGA I+ E+G
Sbjct: 498 VISPDPNIETNEIGVPPVFARKLTYPEPVTSHNFRDMQQAVINGVDKWPGAAAIEYENGQ 557
Query: 596 VVRISSSQAVQRESLAKRLITPEGNY 621
+V + S R SLA +L+ P N+
Sbjct: 558 IVNLRSKSVDDRMSLANQLLAPTNNH 583
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 71/125 (56%), Gaps = 4/125 (3%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDP-CTTCGNN 180
E ++ + TD+E+K +SV ++ + TF++L + +PGGLYD A+G GD C TC N
Sbjct: 12 ETVEFTFLTDEEIKAISVKRIENDSTFDNLLNPVPGGLYDPALGSW---GDALCATCNLN 68
Query: 181 YTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAG 240
+ C GH GHIELPVPV + +F V LL+ C C + + +++LL G
Sbjct: 69 QSSCPGHAGHIELPVPVYHPVFLDQVLRLLRSQCVYCKGFRMRHREINRYSCKLRLLQHG 128
Query: 241 YVTQA 245
+ +A
Sbjct: 129 LLHEA 133
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 63/104 (60%), Gaps = 1/104 (0%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IGVP FA+ LTYP PVT N +++ VING + +PGA I+
Sbjct: 493 FAARSVISPDPNIETNEIGVPPVFARKLTYPEPVTSHNFRDMQQAVINGVDKWPGAAAIE 552
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKIITRQ 117
E+G +V + S R SLA +L+ P + H + MK K + R
Sbjct: 553 YENGQIVNLRSKSVDDRMSLANQLLAPTN-NHMSGMKSKKVYRH 595
>gi|429853059|gb|ELA28158.1| DNA-directed RNA polymerase i subunit rpa1 [Colletotrichum
gloeosporioides Nara gc5]
Length = 1704
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 99/280 (35%), Positives = 151/280 (53%), Gaps = 15/280 (5%)
Query: 344 LDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKEL--IATD 401
+DK ++N + +Q Y+ A EV A ++L+ E + + TK++ I D
Sbjct: 312 MDKGDEDATN--VSPGQQRYISAMEVRARLRELFEKEQEIMSLIYNSKPVTKKVAKITAD 369
Query: 402 IMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLS 461
+ F+R+++VPPN RP + E +N LY++IL +C S+ + + +Q
Sbjct: 370 MFFLRTILVPPNKFRPEARTGDSISEAQQNSLYKNILRNCVSIARIHQNVGGTDQYGRAR 429
Query: 462 EALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLN-INKTTGAHQIDGLKQMLDGKTGMI 520
+ + L W ELQ +V+ L+D N + DG+KQ L+ K G+
Sbjct: 430 DI----------SDLHQIWTELQESVNSLIDKSKNPVQGAAAKRNEDGIKQKLEKKEGLF 479
Query: 521 RQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGP 580
R+NMMGKRVNFA RSVI+PDP + + IGVP FA+ LTYP PVT N +++ VING
Sbjct: 480 RKNMMGKRVNFAARSVISPDPNIETNEIGVPPVFARKLTYPEPVTSHNFRDMQQAVINGV 539
Query: 581 NVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPEGN 620
+ +PGA I+ E+G +V + S R SLA +L+ P N
Sbjct: 540 DKWPGAAAIEYENGQIVNLRSKSTDDRVSLANQLLAPTNN 579
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 89/199 (44%), Gaps = 38/199 (19%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDP-CTTCGNN 180
E ++ + T++E++ +SV ++ + TF++L + +PGGLYD A+G GD C TC N
Sbjct: 12 ETVEFTFLTEEEIRAVSVKRIENDSTFDNLLNPVPGGLYDPALGSW---GDALCATCNLN 68
Query: 181 YTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAG 240
+ C GH GHIELPVPV + +F V LL+ C C + F +++LL G
Sbjct: 69 QSSCPGHAGHIELPVPVYHPIFLDQVLRLLRSQCAYCKGFRMRHRESNRFSCKLRLLQHG 128
Query: 241 YVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEE------ 294
LH A LV + ++S+ G DY E
Sbjct: 129 L------------------LHEAHLVDAIGEELKSLAMPGVP----TDYDSEAEEEGTST 166
Query: 295 ------LRSAFVAQVLSRH 307
R AFV Q L H
Sbjct: 167 VDNVIGAREAFVRQSLKAH 185
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 61/100 (61%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IGVP FA+ LTYP PVT N +++ VING + +PGA I+
Sbjct: 490 FAARSVISPDPNIETNEIGVPPVFARKLTYPEPVTSHNFRDMQQAVINGVDKWPGAAAIE 549
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI 113
E+G +V + S R SLA +L+ P + Q + +K+
Sbjct: 550 YENGQIVNLRSKSTDDRVSLANQLLAPTNNQMSGVKSKKV 589
>gi|169623425|ref|XP_001805120.1| hypothetical protein SNOG_14953 [Phaeosphaeria nodorum SN15]
gi|160704980|gb|EAT77805.2| hypothetical protein SNOG_14953 [Phaeosphaeria nodorum SN15]
Length = 1691
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 100/263 (38%), Positives = 146/263 (55%), Gaps = 10/263 (3%)
Query: 361 QGYVMASEVEADFKKLWTNEHLFLKCLI-PVLDTTKELIATDIMFIRSLVVPPNNLRPLS 419
Q Y+ A+EV A L+ E ++ L P + + D+ F ++VVPPN R
Sbjct: 325 QEYMTAAEVRAAMILLFEQEADMMRLLYSPYASKSLVSVTADMFFTEAVVVPPNRYRLED 384
Query: 420 MEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNS 479
E +N LY+ IL +C +++ + MK +E +EA G R ++ LQ
Sbjct: 385 KTGDSIAESPKNSLYKGILNACDAMRQISNEMKGQE-----NEA--GYRRRNFDD-LQTQ 436
Query: 480 WHELQYNVDLLMDAKLNINKTTGA-HQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
W LQ V+ L+D + N + A DG+KQ+L+ K G+ R+NMMGKRVNFA RSVI+
Sbjct: 437 WVNLQGAVNALIDKEANPTQGRAAITNADGIKQVLEKKEGLFRKNMMGKRVNFAARSVIS 496
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVR 598
PDP + + IGVP FA LTYP PVT N L++ V+NGP+ +PGA I+NE G V+
Sbjct: 497 PDPNIETNEIGVPPVFAIKLTYPEPVTNHNFYDLKEAVLNGPDKWPGAVAIENESGQVIA 556
Query: 599 ISSSQAVQRESLAKRLITPEGNY 621
+ +R +LA +L+ P +Y
Sbjct: 557 LRKKNYEERLALANQLLAPSNSY 579
Score = 106 bits (264), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 79/128 (61%), Gaps = 3/128 (2%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCG-NNYT 182
++ + + Q+V+ LSV ++ +P TF+SL H + GGL+D A+G + +PC+TCG +
Sbjct: 14 VEFGFLSTQDVRTLSVKRITNPTTFDSLLHPVAGGLHDAALGAFLD--NPCSTCGLTTFM 71
Query: 183 KCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYV 242
C GH GHIELPVPV N F + LL+ C CH++ + + F+++++L+ G V
Sbjct: 72 GCPGHCGHIELPVPVYNLTFLDQLLRLLRGKCVYCHQLKLARVTVNEFVSRLRLIRCGLV 131
Query: 243 TQAKDLEE 250
+A +L E
Sbjct: 132 QEANELHE 139
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 56/89 (62%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IGVP FA LTYP PVT N L++ V+NGP+ +PGA I+
Sbjct: 489 FAARSVISPDPNIETNEIGVPPVFAIKLTYPEPVTNHNFYDLKEAVLNGPDKWPGAVAIE 548
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPED 102
NE G V+ + +R +LA +L+ P +
Sbjct: 549 NESGQVIALRKKNYEERLALANQLLAPSN 577
>gi|294868586|ref|XP_002765594.1| DNA-directed RNA polymerase I largest subunit, putative [Perkinsus
marinus ATCC 50983]
gi|239865673|gb|EEQ98311.1| DNA-directed RNA polymerase I largest subunit, putative [Perkinsus
marinus ATCC 50983]
Length = 1775
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 147/541 (27%), Positives = 238/541 (43%), Gaps = 57/541 (10%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSL-GHTIPGGLYDLAMGPISERGDPCTTCGNNYT 182
++ Y + +E++ +SV ++ F +L G +P GLYD A+GP+ GD C TCG
Sbjct: 18 VQFMYMSPKEIQDISVKEITEVAAFGNLAGAPLPDGLYDPALGPL-HIGDLCKTCGLGVH 76
Query: 183 KCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYV 242
C GH+GHI+L V N R + +L+ C C+ + + ++ KL+ AG
Sbjct: 77 DCPGHLGHIKLATDVYNPFLIRTLYNVLRRMCTSCNHFRVRKAVTQRYCDRFKLILAGLE 136
Query: 243 TQAKD-------------LEETLFNEENLR-----LHPAQLVQLVDSHVQSILAHGTKIC 284
++ D LE + ++ N + A S+V I+ HG +
Sbjct: 137 PESHDVVMEPCDEKTKSALERDMTSDPNADSREAFVEHASYQDGSSSYVPYIMGHGEEQN 196
Query: 285 DINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKID-------- 336
+ L V L + V + + + I ++ F+ +
Sbjct: 197 RVKALVKQLGLAHNEVNDNLEKLVGKNTSWGISSSGEIQ-AWNDLVAEFENEVSVAVCPN 255
Query: 337 -KDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTK 395
K + NK ++ K + +V + V KLW E L+ L P
Sbjct: 256 CKAKSELFRVDGYNKIFRKLRGKAAEKFVTPTYVRNLLHKLWCEEREILEFLFPASVGRG 315
Query: 396 ELIATDIMFIRSLVVPPNNLRPLSMEQ--------MPPVEHSRNKLYQSILYSCGSLKSV 447
E DI F++++VVPPN LRPL +P + +S L L++
Sbjct: 316 E----DIFFMQNIVVPPNKLRPLRFGGDSDDNQGFLPASTVCLKNILESNLLLKQLLETD 371
Query: 448 IMAMKNKEQSDLLSEALKGIRGDT------LNNK--------LQNSWHELQYNVDLLMDA 493
A++N + +AL + D ++N L + +LQ NV+ +D+
Sbjct: 372 QEAVENPNDREKAGDALPNLISDEDETMKPVDNTPQRGPMTTLGTALIDLQNNVNNYLDS 431
Query: 494 KLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLE 553
+ K G++Q+L+ K G+ R MMGKRVN+A RSVI+PD L + IG+P+
Sbjct: 432 AKS-GKAQNKVVAFGVRQLLERKQGLFRMKMMGKRVNYAARSVISPDVSLETNQIGLPMF 490
Query: 554 FAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKR 613
A LT P PV +NV LR +V NGP+ YPGA + DG +V + Q QR+++A+
Sbjct: 491 AALQLTVPEPVNSFNVDYLRALVENGPDKYPGAAAVVFPDGKLVSLKGRQPHQRKAIARS 550
Query: 614 L 614
L
Sbjct: 551 L 551
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 59/99 (59%), Gaps = 2/99 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PD L + IG+P+ A LT P PV +NV LR +V NGP+ YPGA +
Sbjct: 468 YAARSVISPDVSLETNQIGLPMFAALQLTVPEPVNSFNVDYLRALVENGPDKYPGAAAVV 527
Query: 74 NEDGSVVRISSSQAVQRESLAKRLI--TPEDQQHRAIMK 110
DG +V + Q QR+++A+ L T D++ R +++
Sbjct: 528 FPDGKLVSLKGRQPHQRKAIARSLYQSTNPDKKPRVVLR 566
>gi|156839925|ref|XP_001643648.1| hypothetical protein Kpol_1040p3 [Vanderwaltozyma polyspora DSM
70294]
gi|156114268|gb|EDO15790.1| hypothetical protein Kpol_1040p3 [Vanderwaltozyma polyspora DSM
70294]
Length = 1656
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 94/259 (36%), Positives = 152/259 (58%), Gaps = 6/259 (2%)
Query: 363 YVMASEVEADFKKLWTNEHLFLKCLIPVL-DTTKELIATDIMFIRSLVVPPNNLRPLSME 421
Y++++EV + ++ E L+C+ + +++L+ D F+ ++VPP R S
Sbjct: 309 YILSTEVRNILRAVFKTEQEVLQCVFHARPNLSRKLVKADTFFMEVVLVPPTRFRLPSKL 368
Query: 422 QMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWH 481
E+++N+L IL + S+++ N E S L + + + ++L N++
Sbjct: 369 GDEVHENTQNQLLSKILTT-----SLLIRDLNDEMSKLQKDKVSLQDRRVIFSRLMNAFV 423
Query: 482 ELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDP 541
+Q +V+ +D+ T G I G+KQ L+ K G+ R++MMGKRVN+A RSVI+PDP
Sbjct: 424 TIQNDVNAFIDSTKAQGNTGGKVPIPGVKQALEKKEGLFRKHMMGKRVNYAARSVISPDP 483
Query: 542 YLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISS 601
+ + IGVP FA LTYP PVT +N+ LR+ VINGP+ +PGA+ IQNEDGS+V +
Sbjct: 484 NIETNEIGVPPVFATKLTYPEPVTSYNIAELRQAVINGPDKWPGASQIQNEDGSLVSLIG 543
Query: 602 SQAVQRESLAKRLITPEGN 620
QR++LA +L+TP N
Sbjct: 544 MTLEQRKALANQLMTPSSN 562
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 70/120 (58%), Gaps = 2/120 (1%)
Query: 130 TDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
T QE++ LS ++ +P ++LGH I GGLYDLA+G + C+TCG + C GH G
Sbjct: 20 TAQEIRNLSAKQITNPTVLDNLGHPISGGLYDLALGAFLR--NLCSTCGLDEKFCPGHQG 77
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLE 249
HIELPVP N LFF + + L+ SC CH + + + ++KLL G + ++ L+
Sbjct: 78 HIELPVPCYNPLFFNQLYIYLRSSCLFCHHFRLRSIEVHRYTCKLKLLQYGLIDESYQLD 137
Score = 99.0 bits (245), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 62/87 (71%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP + + IGVP FA LTYP PVT +N+ LR+ VINGP+ +PGA+ IQ
Sbjct: 473 YAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTSYNIAELRQAVINGPDKWPGASQIQ 532
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS+V + QR++LA +L+TP
Sbjct: 533 NEDGSLVSLIGMTLEQRKALANQLMTP 559
>gi|198430691|ref|XP_002124424.1| PREDICTED: similar to RNA polymerase I large subunit [Ciona
intestinalis]
Length = 1547
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 99/297 (33%), Positives = 150/297 (50%), Gaps = 41/297 (13%)
Query: 361 QGYVMASEVEADFKKLWTNEHLFLKCLIPVLD---------------TTKELIATDIMFI 405
Q Y+ S V+ LW NE L + + T + A D++F+
Sbjct: 55 QFYMTPSNVKDHISALWNNEKEILSRIFVAMGDAAGISDKEKNDGDFTIQPCSAVDVLFL 114
Query: 406 RSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVI----------------- 448
+L VP + RP+ E + Y +L C L+++I
Sbjct: 115 SALPVPASRFRPIGCVNGRQFESPQTTAYSKVLMDCVILRALIKRLSEANKENIEDEMEE 174
Query: 449 -------MAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTT 501
M + S + + I G TL KL+N+W LQ +V+ L+D+ L+ T+
Sbjct: 175 EEEDVTKMGKLKLKMSSKKMDVISSIPGKTLPQKLENAWLRLQQHVNSLLDSDLD-RLTS 233
Query: 502 GAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYP 561
+ G+KQ+L+ K G+ R++MMGKRVN+A RSVI+PDPY+ + IG+P+ FA LTYP
Sbjct: 234 ADDKTPGIKQLLEKKDGLFRKHMMGKRVNYAARSVISPDPYIATNEIGLPMVFAVKLTYP 293
Query: 562 VPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPE 618
PVTPWN +LR+ VINGP +PGA + DG V +S++ QRE++AK+L +
Sbjct: 294 CPVTPWNTKMLRQAVINGPMKHPGATHVV-ADGRTVLLSATDQSQREAVAKQLTATD 349
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 67/106 (63%), Gaps = 3/106 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDPY+ + IG+P+ FA LTYP PVTPWN +LR+ VINGP +PGA +
Sbjct: 263 YAARSVISPDPYIATNEIGLPMVFAVKLTYPCPVTPWNTKMLRQAVINGPMKHPGATHVV 322
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQ--QHRAIMKEKIITRQ 117
DG V +S++ QRE++AK+L + +H K K++ R
Sbjct: 323 -ADGRTVLLSATDQSQREAVAKQLTATDTHGSKHEVFNKPKLVLRH 367
>gi|269859720|ref|XP_002649584.1| DNA-directed RNA polymerases I, II, and III, subunit 1
[Enterocytozoon bieneusi H348]
gi|220066947|gb|EED44416.1| DNA-directed RNA polymerases I, II, and III, subunit 1
[Enterocytozoon bieneusi H348]
Length = 1270
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 141/471 (29%), Positives = 216/471 (45%), Gaps = 90/471 (19%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
LK K+YT QE+ +S +++ + + GH IP G+YDL MGP E C +CG N +
Sbjct: 5 LKFKWYTKQEILDMSEIEITVGKSLDKFGHPIPNGMYDLKMGP-CESDQQCESCGLNQLQ 63
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVT 243
C GH GHI + V+N L F LL++ C C+K+ + +L F ++L +
Sbjct: 64 CPGHFGHINIQ-RVLNPLVFDVTYLLIRAMCNHCNKLKLTTIEKLNF--YLELESCIFYN 120
Query: 244 QAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQV 303
+ +E + EN+ L + + L+ T I IN + +LR
Sbjct: 121 KPPTIENYI-ELENILLSEKR-------KEERDLSKHTAI--INSWLKKSQLRI------ 164
Query: 304 LSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGY 363
KC C N+I+++ +K + F+I D+ L
Sbjct: 165 -------KCPLC----NSITWKIKKG-QYFQIMNDDPVDGLK-----------------L 195
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQM 423
V + + + L+ NE + L + + D + +A +FI L V PN RP
Sbjct: 196 VSINNIYDELLNLYNNEKILLSKMYFIDDNVENGLAW--LFIDILPVIPNKFRPAKKRND 253
Query: 424 PPVEHSRNKLYQSIL-YSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHE 482
E+ N L +IL +S SL N+K E
Sbjct: 254 FLYENPLNTLLSTILNFSTLSLT---------------------------NDKY---ISE 283
Query: 483 LQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPY 542
LQY V L D N N ++ G+KQ+L+ K G+ R N+MGKRVN++ RSVI+PDP
Sbjct: 284 LQYRVSLYFD---NTNPSSC-----GIKQILEKKEGLFRNNIMGKRVNYSARSVISPDPC 335
Query: 543 LNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
++ D IG+PL FA LT+P + N+ +RK++ING +VYPGAN ++ D
Sbjct: 336 ISTDEIGLPLVFANQLTFPEKINKMNIEHMRKLIINGADVYPGANFVKELD 386
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 44/63 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP ++ D IG+PL FA LT+P + N+ +RK++ING +VYPGAN ++
Sbjct: 324 YSARSVISPDPCISTDEIGLPLVFANQLTFPEKINKMNIEHMRKLIINGADVYPGANFVK 383
Query: 74 NED 76
D
Sbjct: 384 ELD 386
>gi|449299692|gb|EMC95705.1| hypothetical protein BAUCODRAFT_34468 [Baudoinia compniacensis UAMH
10762]
Length = 1744
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 99/260 (38%), Positives = 147/260 (56%), Gaps = 12/260 (4%)
Query: 363 YVMASEVEADFKKLWTNEHLFLKCLIPVLDTTK---ELIATDIMFIRSLVVPPNNLRPLS 419
Y+ S V A +L+ E L + + + + + D+ F+R+++VPPN RP +
Sbjct: 349 YLNPSRVHAHLSQLFEREQEVLAAVYGHKRSERRGGKPLTPDMFFLRTILVPPNRYRPEA 408
Query: 420 MEQMPPV-EHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQN 478
+ E N LY++IL +C +L ++ + K++SD A GD L+N
Sbjct: 409 RTGSDEIAEAQENTLYKNILNACETLSNIQRELSGKQESDPRYRARN--YGD-----LEN 461
Query: 479 SWHELQYNVDLLMDAKLNINKTTGAHQI-DGLKQMLDGKTGMIRQNMMGKRVNFAGRSVI 537
SW +LQ V+ L+D L A ++ DG+KQ L+ K GM R+ MMGKRVNFA R+VI
Sbjct: 462 SWIQLQDAVNSLVDRDLAPLSGAAARRLPDGIKQKLEKKEGMFRKYMMGKRVNFAARTVI 521
Query: 538 TPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
+PDP + + IGVP FA LTYP VT WN+ L++ V NGP+V+PGA I++E G VV
Sbjct: 522 SPDPNIETNEIGVPPVFAIKLTYPEAVTEWNIEELQEAVKNGPHVWPGAVAIESETGQVV 581
Query: 598 RISSSQAVQRESLAKRLITP 617
+ A R +LA +L+ P
Sbjct: 582 NLERKNAEDRTALANQLLAP 601
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 56/87 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP + + IGVP FA LTYP VT WN+ L++ V NGP+V+PGA I+
Sbjct: 515 FAARTVISPDPNIETNEIGVPPVFAIKLTYPEAVTEWNIEELQEAVKNGPHVWPGAVAIE 574
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
+E G VV + A R +LA +L+ P
Sbjct: 575 SETGQVVNLERKNAEDRTALANQLLAP 601
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 65/118 (55%), Gaps = 4/118 (3%)
Query: 133 EVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDP-CTTCGNNYTKCKGHIGHI 191
+++ LS ++ S TF++L + +PGGLY +G GD C TCG +C GH GHI
Sbjct: 23 DIRSLSARQITSATTFDTLLNPVPGGLYTPELGQF---GDASCATCGLKNPQCPGHCGHI 79
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLE 249
E+PVP + F V LL+ C C ++ + +++++L+ G +T+ +L+
Sbjct: 80 EMPVPCYHPTFMDQVLRLLRGMCIYCSRLKMSRVVVHKMLSRLRLIQYGLLTELHELD 137
>gi|310798568|gb|EFQ33461.1| RNA polymerase Rpb1 [Glomerella graminicola M1.001]
Length = 1707
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 97/265 (36%), Positives = 147/265 (55%), Gaps = 14/265 (5%)
Query: 360 EQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKEL--IATDIMFIRSLVVPPNNLRP 417
+Q Y+ A EV A ++L+ E + + TK+ ++ D+ FIR+++VPPN RP
Sbjct: 328 QQRYISAMEVRARLRELFEKEQDIMSLVYSSKPMTKKSAKVSADMFFIRTILVPPNKFRP 387
Query: 418 LSMEQMPPV-EHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKL 476
+ + E +N LY+ I+ +CG++ + ++ +Q G D + L
Sbjct: 388 EARTGDSQISEAQQNSLYKMIMRNCGNIARIHQSVGATDQY--------GRPRDITD--L 437
Query: 477 QNSWHELQYNVDLLMDAKLN-INKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRS 535
W ELQ +V+ L+D N + DG+KQ L+ K G+ R+NMMGKRVNFA RS
Sbjct: 438 HQVWTELQESVNSLIDKSKNPVQGAAAKRNEDGIKQKLEKKEGLFRKNMMGKRVNFAARS 497
Query: 536 VITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGS 595
VI+PDP + + IGVP FA+ LTYP PVT N +++ VING + +PGA I+ E+G
Sbjct: 498 VISPDPNIETNEIGVPPVFARKLTYPEPVTSHNFRDMQQAVINGVDKWPGAAAIEYENGQ 557
Query: 596 VVRISSSQAVQRESLAKRLITPEGN 620
+V + S R SLA +L+ P N
Sbjct: 558 IVNLRSKSVDDRVSLANQLLAPTNN 582
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 115/239 (48%), Gaps = 35/239 (14%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDP-CTTCGNN 180
E ++ + TD+E+K +SV ++ + TF++L + +PGGLYD A+G GD C TC N
Sbjct: 12 ETVEFTFLTDEEIKAISVKRIENDSTFDNLLNPVPGGLYDPALGSW---GDALCATCNLN 68
Query: 181 YTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAG 240
+ C GH GHIELPVPV + +F V LL+ C C + + +++LL G
Sbjct: 69 QSSCPGHAGHIELPVPVYHPIFLDQVLRLLRSQCVYCKGFRMRHREINRYSCKLRLLQHG 128
Query: 241 YVTQA-------------------KDLEETLFNEENLRLHPAQLVQLVDSHV-QSILAHG 280
+ +A D E EE ++ +++V Q++ +H
Sbjct: 129 LLHEAHLVDAIGEELKGLALPGVPTDYESEA--EEEGTSSVDNIIGAREAYVRQALKSHK 186
Query: 281 TKICDI--NDYKGGEELRSAFVAQVLSRHVK-RKCIFCA--TPINAISYQQRKIIKSFK 334
+ ++ ++G E+R + L++ K R+C C +P +Y++ + +K F+
Sbjct: 187 LSLGEVRKGKHEGAIEMRRELIKDFLTQITKPRRCDNCGGISP----AYRKDRFVKIFE 241
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 61/100 (61%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IGVP FA+ LTYP PVT N +++ VING + +PGA I+
Sbjct: 493 FAARSVISPDPNIETNEIGVPPVFARKLTYPEPVTSHNFRDMQQAVINGVDKWPGAAAIE 552
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI 113
E+G +V + S R SLA +L+ P + Q + +K+
Sbjct: 553 YENGQIVNLRSKSVDDRVSLANQLLAPTNNQMSGMKSKKV 592
>gi|398396432|ref|XP_003851674.1| hypothetical protein MYCGRDRAFT_94196 [Zymoseptoria tritici IPO323]
gi|339471554|gb|EGP86650.1| hypothetical protein MYCGRDRAFT_94196 [Zymoseptoria tritici IPO323]
Length = 1722
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 94/260 (36%), Positives = 146/260 (56%), Gaps = 8/260 (3%)
Query: 363 YVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQ 422
Y+ S V A +L+ + L + ++ D+ F+ +L+VPPN RP +
Sbjct: 328 YLNPSRVHAQLVQLFEKDAEVLNLVYGGDSPGHSGVSADMFFLNALIVPPNKYRPEAKTG 387
Query: 423 MPPV-EHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWH 481
+ E N LY+++L +C L + +E S + A+ R T + + +W
Sbjct: 388 DNEIAEAQENSLYKAVLNACERLTEI-----QRELSGTEAPAVPRYRPSTYAD-FETTWL 441
Query: 482 ELQYNVDLLMDAKLN-INKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPD 540
LQ +V+ L+D L+ + GA DG+KQ L+ K GM R+ MMGKRVNFA R+VI+PD
Sbjct: 442 TLQESVNSLIDKNLSPLQGRAGARNADGVKQKLEKKEGMFRKYMMGKRVNFAARTVISPD 501
Query: 541 PYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRIS 600
P + + IGVP FA LTYP PVT WN+ +++ V NG ++PGA I+NE+GSV+++
Sbjct: 502 PNIETNEIGVPPVFAVKLTYPEPVTQWNIEEMQEAVRNGAFIWPGALAIENENGSVLKLD 561
Query: 601 SSQAVQRESLAKRLITPEGN 620
A +R +LA +L+ P G+
Sbjct: 562 RKNAEERTALANQLLAPAGS 581
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 59/87 (67%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP + + IGVP FA LTYP PVT WN+ +++ V NG ++PGA I+
Sbjct: 492 FAARTVISPDPNIETNEIGVPPVFAVKLTYPEPVTQWNIEEMQEAVRNGAFIWPGALAIE 551
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NE+GSV+++ A +R +LA +L+ P
Sbjct: 552 NENGSVLKLDRKNAEERTALANQLLAP 578
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 69/122 (56%), Gaps = 2/122 (1%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
+T ++V+ LS ++ + TF++L + +PGGLY +G + + C TCG +C GH
Sbjct: 19 FTTEDVRALSARQITNSTTFDTLLNPVPGGLYSAELGQFGD--NACATCGLKNPQCPGHA 76
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELPVP + F V LL+ +C C ++ + + FI +++L+ G + + L
Sbjct: 77 GHIELPVPCYHPTFMDQVLRLLRAACIYCGRLKMRRVAVARFIAKLQLVRYGLLKELNQL 136
Query: 249 EE 250
+E
Sbjct: 137 DE 138
>gi|118363248|ref|XP_001014750.1| RNA polymerase Rpb1, domain 2 family protein [Tetrahymena
thermophila]
gi|89296616|gb|EAR94604.1| RNA polymerase Rpb1, domain 2 family protein [Tetrahymena
thermophila SB210]
Length = 1727
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 161/614 (26%), Positives = 249/614 (40%), Gaps = 124/614 (20%)
Query: 117 QEVVPEILK---LKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMG-PISERGD 172
QEV+ L YYT E+++LSV ++ +PI F+SL I GGLYD MG ++
Sbjct: 9 QEVISRRLAGVGFSYYTADEIRKLSVKEITNPIAFDSLNRPIKGGLYDPCMGVSPYDKFT 68
Query: 173 PCTTCGNNYTKCKGHIGHIELPVPVINTLF---------------------------FRD 205
C TCG +C GH+GH+EL +PV N F +
Sbjct: 69 RCETCGCEGLECPGHMGHVELLLPVYNPFLIDKLLKLLRAQCLKCNKFRMTNQKLKMFAN 128
Query: 206 VQLLLKLSCFL--------CHKINI------PATSQLLFINQIKLLDAGYVTQAKDLEET 251
V L+KL C ++I T+Q+ + + Y ++ D E+
Sbjct: 129 VFTLIKLGYIFEAKEYKQTCESLSILQIQNNKETTQIQSYADKRRKSSDY--KSSDTEQI 186
Query: 252 L-----FNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGG----EELRSAFVAQ 302
+ +E +++ + L D Q + K + + G + SAF Q
Sbjct: 187 MPKKSQIEQEGAKIYQNNINNLEDKKKQLLSLINVKQNNTEQFSKGVSYTNAMNSAF-EQ 245
Query: 303 VLSRHVKR----KCIFCATPINAISYQQRKIIKSFKI---------------DKDNLDQS 343
L KC C P AI +++ F I +D+
Sbjct: 246 ALKEFWNSINIGKCPHCKEPQQAI---RKEGFSKFFIKKSSSEAKKSSSQKKHQDDYTSD 302
Query: 344 LDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIAT--- 400
D+S + S Q Y+ EV+ ++ W E L + ++ T + +
Sbjct: 303 DDQSESGHSKAEKANANQKYLDPLEVKELMRRFWDEERKLLNIIYGTIEVTPQTLKNSSK 362
Query: 401 ---------DIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAM 451
++ FI + V PN RP + H + IL L+ +I+
Sbjct: 363 GFMIRRNDYNMFFIEVIPVTPNRFRPENKLGEQTFLHGHTVVLTKILQFNVELRRMIVL- 421
Query: 452 KNKEQSDLLSEALKGIRGDTLNNKLQ-------------------------NSWHELQYN 486
Q LSE K D L+++ Q W ++Q
Sbjct: 422 ----QRQSLSEEKKKKLIDQLDSRFQNQLQLKQNQNFQQTINNIVKLNDVITKWLDIQEA 477
Query: 487 VDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNID 546
V+ +D+ T + G++Q+L+ K G+ R MMGKRVN+A RSVI+PDP LN +
Sbjct: 478 VNCFLDSSKATK--TQDREGTGIRQLLEKKEGLFRMKMMGKRVNYAARSVISPDPNLNTN 535
Query: 547 SIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQ 606
+GVPL AK LT+P V +N LRK++INGP +PGAN I E+G+ + + + Q
Sbjct: 536 EVGVPLFVAKKLTFPEYVNEYNAKHLRKLIINGPFQHPGANFIV-ENGNKISLEALNEQQ 594
Query: 607 RESLAKRLITPEGN 620
R LAK L+ N
Sbjct: 595 RIGLAKTLLNNSKN 608
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP LN + +GVPL AK LT+P V +N LRK++INGP +PGAN I
Sbjct: 520 YAARSVISPDPNLNTNEVGVPLFVAKKLTFPEYVNEYNAKHLRKLIINGPFQHPGANFIV 579
Query: 74 NEDGSVVRISSSQAVQRESLAKRLI 98
E+G+ + + + QR LAK L+
Sbjct: 580 -ENGNKISLEALNEQQRIGLAKTLL 603
>gi|389852852|ref|YP_006355086.1| DNA-directed RNA polymerase subunit A' [Pyrococcus sp. ST04]
gi|388250158|gb|AFK23011.1| DNA-directed RNA polymerase subunit A' [Pyrococcus sp. ST04]
Length = 907
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 146/509 (28%), Positives = 212/509 (41%), Gaps = 147/509 (28%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHI 191
QE++++S V+V P T++ G+ I GG+ D MG I G C TCG +C GH GHI
Sbjct: 19 QEIRKMSAVEVTVPDTYDDDGYPIEGGVMDKRMGVIDP-GLRCETCGARAGECPGHFGHI 77
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEET 251
EL PVI+ F + + +L+ +C C +IKL D K LE
Sbjct: 78 ELARPVIHVGFAKTIHRVLESTCREC--------------GRIKLTDEEIEEYMKKLE-- 121
Query: 252 LFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRK 311
L + S V IL K + R V
Sbjct: 122 -------------LAKNRRSEVNKILKEIHK-----------KARERMV----------- 146
Query: 312 CIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQG-----YVMA 366
C C P I +++ I +RK EQG +M
Sbjct: 147 CPHCGAPQYPIKFEKPTIYWE-----------------------LRKDEQGNEYKHRMMP 183
Query: 367 SEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPV 426
+EV +K+ + +P+L E + M + L VPP +RP
Sbjct: 184 TEVRDRLEKIPDED-------LPLLGLHPEKSRPEWMVLTVLPVPPVTVRP--------- 227
Query: 427 EHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNS------- 479
S+ + + + DL + + IR +NN+L+ +
Sbjct: 228 -------------------SITLETGIRAEDDLTHKLVDIIR---INNRLKQNIEAGAPQ 265
Query: 480 ------WHELQYNVDLLMDAKLNINKTTG--------AHQIDGLKQMLDGKTGMIRQNMM 525
W LQY+V ++ N+T+G + L Q L GK G R N+
Sbjct: 266 LIIEDLWDLLQYHVTTYIN-----NETSGIPPAKHKSGRPLKTLAQRLKGKEGRFRGNLS 320
Query: 526 GKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPG 585
GKRVNF+ R+VI+PDP ++I+ +GVP+E A LT P VT +N+ LRKMV+NGP+ YPG
Sbjct: 321 GKRVNFSARTVISPDPMISINEVGVPIEIAMELTVPEKVTEFNIEKLRKMVLNGPDKYPG 380
Query: 586 ANMIQNEDGSVVRISSSQAVQRESLAKRL 614
AN + + DG +RI S RE LA+RL
Sbjct: 381 ANYVIDPDGKRIRIMES---NREFLAERL 406
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 58/84 (69%), Gaps = 3/84 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP ++I+ +GVP+E A LT P VT +N+ LRKMV+NGP+ YPGAN +
Sbjct: 326 FSARTVISPDPMISINEVGVPIEIAMELTVPEKVTEFNIEKLRKMVLNGPDKYPGANYVI 385
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ DG +RI S RE LA+RL
Sbjct: 386 DPDGKRIRIMES---NREFLAERL 406
>gi|444320219|ref|XP_004180766.1| hypothetical protein TBLA_0E01930 [Tetrapisispora blattae CBS 6284]
gi|387513809|emb|CCH61247.1| hypothetical protein TBLA_0E01930 [Tetrapisispora blattae CBS 6284]
Length = 1659
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/297 (34%), Positives = 166/297 (55%), Gaps = 9/297 (3%)
Query: 325 QQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFL 384
QQ + + ID++ ++ D N S+ K Y++++EV+A ++ E L
Sbjct: 281 QQARTLNGDSIDENEEIETFDIGRNPSTKP---KTGSTYILSTEVKAILNAVFRKEQQVL 337
Query: 385 KCLIPVL-DTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGS 443
+ + + +K+L+ D F+ +VVPP R S E+++N+L IL +
Sbjct: 338 QYVFHARPNLSKKLVKPDAFFMDVIVVPPTRFRLPSKLGDEVHENTQNQLLSKILTT--- 394
Query: 444 LKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGA 503
S+++ N E S L + + + ++L N++ +Q +V+ +D+ T G
Sbjct: 395 --SLLIRDLNDEMSKLQKDKVSLEDRRVIFSRLMNAFVTIQNDVNSFIDSSKAQGNTGGN 452
Query: 504 HQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVP 563
I G+KQ L+ K G+ R++MMGKRVN+A RSVI+PDP + + IGVP FA LTYP P
Sbjct: 453 DVIPGVKQALEKKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFAVKLTYPEP 512
Query: 564 VTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPEGN 620
VT +N+ LR+ VINGP+ +PGA IQNEDG++V + QR++LA +L+TP N
Sbjct: 513 VTSYNIAELRQAVINGPDKWPGAIQIQNEDGTLVSLIGMTLEQRKALANQLMTPSSN 569
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 70/120 (58%), Gaps = 2/120 (1%)
Query: 130 TDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+ +++ LS ++ +P ++LGH I GGLYDLA+G + C+TCG + C GH G
Sbjct: 20 SSDQIRNLSAKQITNPTVLDNLGHPISGGLYDLALGAFLR--NLCSTCGQDEKFCPGHQG 77
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLE 249
HIELPVP N LFF + + L+ SC CH + + L+ ++KLL G + ++ +E
Sbjct: 78 HIELPVPCYNPLFFNQLFIYLRSSCLYCHHFRLKSLDTHLYSCKLKLLQYGLIDESYKIE 137
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 66/100 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP + + IGVP FA LTYP PVT +N+ LR+ VINGP+ +PGA IQ
Sbjct: 480 YAARSVISPDPNIETNEIGVPPVFAVKLTYPEPVTSYNIAELRQAVINGPDKWPGAIQIQ 539
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI 113
NEDG++V + QR++LA +L+TP ++ +K+
Sbjct: 540 NEDGTLVSLIGMTLEQRKALANQLMTPSSNSSSHVLNKKV 579
>gi|406859187|gb|EKD12256.1| RNA polymerase Rpb1 [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 1707
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 100/284 (35%), Positives = 154/284 (54%), Gaps = 11/284 (3%)
Query: 332 SFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVL 391
S +D D + + KS +++ + ++ Y+ A EV A L+ E L +
Sbjct: 293 SLDVDGDVVMGEASGTTAKSDSKVAKPSDK-YINAIEVRARLTLLFDKEQDILSLVYDSR 351
Query: 392 DTTKEL--IATDIMFIRSLVVPPNNLRPLSMEQMPPV-EHSRNKLYQSILYSCGSLKSVI 448
TTK + D+ F+++L+VPPN RP + V E +N+LY+ IL SC + +
Sbjct: 352 STTKNATPVTADMFFLQTLMVPPNKFRPEAHTGDDEVAEAPQNRLYKDILKSCERVAEIY 411
Query: 449 MAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLN-INKTTGAHQID 507
A+ ++ + + LQ +W +LQ V+ L+D N + G D
Sbjct: 412 QAIHKQDAQEDSPYRPRDFY------DLQEAWCQLQDVVNSLIDRDRNPVQGVAGQKNED 465
Query: 508 GLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPW 567
G+KQ L+ K G+ R+NMMGKRVNFA RSVI+PDP + + IGVP FAK LTYP PVT
Sbjct: 466 GIKQKLEKKEGLFRKNMMGKRVNFAARSVISPDPNIETNEIGVPPVFAKKLTYPEPVTSH 525
Query: 568 NVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLA 611
N +++ VING +++PGA I+NE+G V+ + + +R +LA
Sbjct: 526 NFKDMQQAVINGVDIWPGAAAIENENGQVINLRTKSQDERLALA 569
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 73/128 (57%), Gaps = 2/128 (1%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNY 181
E + + E++ LSV ++ +P TF++L H +PGGLYD A+G + CTTC N
Sbjct: 12 ESVDFGFLGAAEIRALSVRRIENPQTFDTLLHPVPGGLYDPALGAWGDHF--CTTCNLNT 69
Query: 182 TKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGY 241
C GH+GHIELPVPV + +F + LL+ C C+ + +I +++L+ G
Sbjct: 70 FACPGHVGHIELPVPVYHPIFMDQLLRLLRAKCAYCNYFKMSRKEVNRYICKLRLIQHGL 129
Query: 242 VTQAKDLE 249
+ A++++
Sbjct: 130 LGPAEEVD 137
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 54/81 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IGVP FAK LTYP PVT N +++ VING +++PGA I+
Sbjct: 489 FAARSVISPDPNIETNEIGVPPVFAKKLTYPEPVTSHNFKDMQQAVINGVDIWPGAAAIE 548
Query: 74 NEDGSVVRISSSQAVQRESLA 94
NE+G V+ + + +R +LA
Sbjct: 549 NENGQVINLRTKSQDERLALA 569
>gi|425770097|gb|EKV08571.1| DNA-directed RNA polymerase [Penicillium digitatum Pd1]
gi|425771644|gb|EKV10081.1| DNA-directed RNA polymerase [Penicillium digitatum PHI26]
Length = 1673
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 98/262 (37%), Positives = 154/262 (58%), Gaps = 14/262 (5%)
Query: 361 QGYVMASEVEADFKKLWTNEHLFLKCLI---PVLDTTKELIATDIMFIRSLVVPPNNLRP 417
Q ++ +SEV L+ E L+ + PV K +++ D+ FI+SL+VPPN RP
Sbjct: 306 QEFMSSSEVYGALHLLFQKESEILQLVYNSRPVPKGVK-VVSADMFFIKSLMVPPNKYRP 364
Query: 418 LSMEQMPPV-EHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKL 476
+ V E +N + +IL C ++ + ++N+E+ + R ++ L
Sbjct: 365 AVQQGAGTVMEAQQNTSFNAILKGCDTINQISKEIQNEEEKTM-------SRARNYSDLL 417
Query: 477 QNSWHELQYNVDLLMDA-KLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRS 535
Q + +LQ V+ L+D + ++ + A Q +G+KQ+L+ K G+ R+NMMGKRVNFA RS
Sbjct: 418 Q-AIVQLQDVVNGLIDRDRTSVTGSAAASQPNGIKQILEKKEGLFRKNMMGKRVNFAARS 476
Query: 536 VITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGS 595
VI+PDP + + IGVPL FAK LT+P PVT N L++ VINGP+ YPGA+ I+NE+G
Sbjct: 477 VISPDPNIEPNEIGVPLVFAKKLTFPEPVTNHNFWELKEAVINGPDKYPGASSIENENGQ 536
Query: 596 VVRISSSQAVQRESLAKRLITP 617
V+ + +R +LA +L+ P
Sbjct: 537 VINLKFKNLEERTALANQLLAP 558
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 65/100 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IGVPL FAK LT+P PVT N L++ VINGP+ YPGA+ I+
Sbjct: 472 FAARSVISPDPNIEPNEIGVPLVFAKKLTFPEPVTNHNFWELKEAVINGPDKYPGASSIE 531
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI 113
NE+G V+ + +R +LA +L+ P + + + +K+
Sbjct: 532 NENGQVINLKFKNLEERTALANQLLAPSNWRQKGSRNKKV 571
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 2/116 (1%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+++E+K LSV ++ + T +S + +PGGL D AMG + CTTC N C GH
Sbjct: 20 YSEEEIKALSVKRIHNTPTLDSFNNPVPGGLQDPAMGAWGDH--VCTTCRQNSFTCTGHP 77
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQ 244
GHIELPVP N FF + LL+ C C ++ + ++ +++LL G V +
Sbjct: 78 GHIELPVPFYNVTFFDHIFRLLRAQCVYCLRLQMGRNQVNMYTCKLRLLQYGLVDE 133
>gi|452840368|gb|EME42306.1| hypothetical protein DOTSEDRAFT_175298 [Dothistroma septosporum
NZE10]
Length = 1715
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 94/263 (35%), Positives = 154/263 (58%), Gaps = 9/263 (3%)
Query: 358 KREQGYVMASEVEADFKKLWTNEHLFLKCLIPV-LDTTKELIATDIMFIRSLVVPPNNLR 416
K + YV S+V+A K+L+ + + + + L + E ++ D+ F+ +++VPPN R
Sbjct: 332 KAPEDYVNPSQVKAHLKQLFDRDAEIMNLIYGIDLKKSAERLSADMFFLETVLVPPNRYR 391
Query: 417 PLSMEQMPPV-EHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNK 475
P + + E N LY+ I+ + S+ ++ + K+ + A+ R T +
Sbjct: 392 PEAKTSSNEISEAQENGLYKDIITTSESITAIQRDLTTKD-----APAVSRYRARTYAD- 445
Query: 476 LQNSWHELQYNVDLLMDAKLN-INKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGR 534
L+N+W +LQ NV++++D L+ + GA DG+KQ L+ K GM R+ MMGKRVNFA R
Sbjct: 446 LENAWLQLQENVNVVIDRNLSPLQGRAGARNADGVKQKLEKKEGMFRKYMMGKRVNFAAR 505
Query: 535 SVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDG 594
+VI+PDP + + IGVP FA LTYP PV N +++ V NGP V+PGA I++E G
Sbjct: 506 TVISPDPNIETNEIGVPPVFAVKLTYPEPVNQHNYEDMQQAVKNGPYVWPGAVAIESETG 565
Query: 595 SVVRISSSQAVQRESLAKRLITP 617
+V+ +++ A +R +LA L+ P
Sbjct: 566 AVLNLANKTADERLALANSLLAP 588
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 102/224 (45%), Gaps = 28/224 (12%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHI 191
++V+ LS ++ + TF++L + +PGGLY +G + + C TCG +C GH GHI
Sbjct: 22 KDVRALSAKRITNATTFDTLLNPVPGGLYTSELGQFGD--NACGTCGLKNPQCPGHPGHI 79
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEET 251
ELPVP + F V LL+ +C C K+ + +I +++L+ G + + +L+E
Sbjct: 80 ELPVPCYHPTFMEQVLRLLRAACIYCGKLKMKRVLVARYICKLRLVRCGLLKELTELDEV 139
Query: 252 LFNEENLRLHPA-------------------QLVQLVDSHVQSILAHGTKI-CDINDYKG 291
F + A Q Q ++ GT + C K
Sbjct: 140 EFRSAKGQQTAASGSDDDDDEEDADVKAITQQFEQFTQDSIRRAKKAGTLVECKAEVIKN 199
Query: 292 GEELRSAFVAQVLSRHVK-RKCIFCATPINAISYQQRKIIKSFK 334
R+A Q ++ VK +KC C IN +Y++ + +K F+
Sbjct: 200 A---RTAITRQFMADIVKGKKCGNCGG-INH-AYRKDRFVKVFR 238
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 56/87 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP + + IGVP FA LTYP PV N +++ V NGP V+PGA I+
Sbjct: 502 FAARTVISPDPNIETNEIGVPPVFAVKLTYPEPVNQHNYEDMQQAVKNGPYVWPGAVAIE 561
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
+E G+V+ +++ A +R +LA L+ P
Sbjct: 562 SETGAVLNLANKTADERLALANSLLAP 588
>gi|399218092|emb|CCF74979.1| unnamed protein product [Babesia microti strain RI]
Length = 1746
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 146/479 (30%), Positives = 228/479 (47%), Gaps = 54/479 (11%)
Query: 130 TDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
T++EV L V V S + F++ G TI G++D AMG R D C+TC N + C GH+G
Sbjct: 21 TNEEVAALKRVNVNSAVPFDANGATI-NGVHDPAMGTNDGR-DKCSTC-NGTSDCNGHLG 77
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQ-AK-- 246
IE P+P+ + LF + LLKL CF C ++ IP F+ + +LL +G +++ AK
Sbjct: 78 IIEFPLPLYHPLFKSSLVKLLKLMCFQCCRLKIPNKRVKEFLIKFRLLRSGLISRFAKYS 137
Query: 247 -----------DLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEEL 295
D E LF +E RL L + H I+ + + I + EE
Sbjct: 138 LLTNLSKKSRMDKFERLFKKER-RLCLEGLRKRTAYH--KIVKNSSTILHLY-----EET 189
Query: 296 RSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQI 355
R F + C + I A D +D S++ S
Sbjct: 190 REIFFGLKNLQKCHHCKSACPSSIKAAG------------DGTTVDILWGNSIDYISKHY 237
Query: 356 IRKRE-QGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNN 414
R +E + +V A E+ +KL+ + LK L P + F+ ++ V PN
Sbjct: 238 NRSQEDKSHVTAFELIPFIQKLFEAQSKILKHLFPF----TIMNGHGSFFMYNMCVTPNK 293
Query: 415 LRP-LSMEQMPPVE-HSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTL 472
R L +E V HSR +I+ + L +++ +S+ L + I +
Sbjct: 294 FRAYLPIEGKNKVSLHSRTASLITIVKTVNDLNNLL-------KSENLGTGVATISSNV- 345
Query: 473 NNKLQNSWHELQYNVDLLMDAKLNINKTTG-AHQIDGLKQMLDGKTGMIRQNMMGKRVNF 531
NKLQ + + L + ++ ++ K + A G+KQ+++ K+G++R NMMGKRVN+
Sbjct: 346 -NKLQAALNALVDSTSTATNSAGSVKKDSFLATNRPGIKQLIEKKSGLLRSNMMGKRVNY 404
Query: 532 AGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 590
+ RSVI PD +L+ + IGVPL A +L +P VT N+ L ++V NGP YPGAN I+
Sbjct: 405 SARSVIAPDCFLDTNEIGVPLRIASSLDFPERVTRHNIKFLMRLVENGPYRYPGANYIR 463
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 61/105 (58%), Gaps = 5/105 (4%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD +L+ + IGVPL A +L +P VT N+ L ++V NGP YPGAN I+
Sbjct: 404 YSARSVIAPDCFLDTNEIGVPLRIASSLDFPERVTRHNIKFLMRLVENGPYRYPGANYIR 463
Query: 74 NEDGSVVRISSSQAVQRESLAKRLI--TPEDQQ--HRAIMKEKII 114
+ ++ + + R++ AK L TP+ Q +R +++ ++
Sbjct: 464 -QGKALFFLGGLSDMARKAKAKLLSINTPDRQTIVYRHLLQGDVV 507
>gi|296413785|ref|XP_002836589.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295630417|emb|CAZ80780.1| unnamed protein product [Tuber melanosporum]
Length = 544
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 137/493 (27%), Positives = 215/493 (43%), Gaps = 53/493 (10%)
Query: 128 YYTDQEVKQLSVVKVFSPITFNS-LGHTIP----GGLYDLAMGPISERGDPCTTCGNNYT 182
+ ++ +LSV +V +P TF + + +P GGLYD A+G C TC +Y
Sbjct: 18 FLCKDDITKLSVKQVVNPATFETVIPGNVPVPVVGGLYDPALGASDALRQRCLTCHLDYK 77
Query: 183 KCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYV 242
C GH+GHI LPVPV + LFF + +L+ SC C + F ++KL+ G +
Sbjct: 78 YCPGHVGHISLPVPVYHPLFFDQMLKMLRSSCLYCFHFRMARAEVNRFECKLKLIQYGLL 137
Query: 243 TQAKDLEETLFNEE--------------NLRLHPAQLVQLVDSHVQSILAHGTKICDIND 288
+A +L++ N + A+ + V ++ L G D
Sbjct: 138 VEAAELDDIHPNTRGEEEGEEGEFSGSTEMEAFYAKREKFVARAIRRHLRSGG--LDEGK 195
Query: 289 YKGGEELRSAFVAQVLSR-HVKRKCIFCAT----------------PINAISYQQRKIIK 331
E R V + LS RKC C P+ + Q + +
Sbjct: 196 VMSVAEERRKVVKEFLSTIQFPRKCNRCQAISPGFRKDGYSKIFEVPLTPKA-QSQNVQY 254
Query: 332 SFKIDKDNLDQSLDKSLNKSSNQII-RKREQGYVMAS-EVEADFKKLWTNEHLFLKCLI- 388
F+ + Q L ++ N + RK G ++ S EV + +L+ E L+ L
Sbjct: 255 GFQRPNAAMMQKKPNRLPETKNHDLNRKGAAGRLLHSMEVLNNLSRLFEKEREILQLLYQ 314
Query: 389 --PVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKS 446
+ T + + ++ FI ++ VPP RP E + NK IL C +++
Sbjct: 315 PREAISKTPKPLTPEMFFIHAIAVPPTKFRPPQAAGGEISESATNKQLVKILQGCLAIRD 374
Query: 447 VIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQI 506
N E ++ + +KL ++ LQ +V+ +D+ + A +
Sbjct: 375 YNDKFNNPE--------IEAGAKTVIISKLMQAFVTLQDDVNSFLDSSKSPLTGAAARTL 426
Query: 507 D-GLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVT 565
+ G+KQ L+ K G+ R NMMGKRVNFA RSVI+PDP + IGVP FA LTYP PVT
Sbjct: 427 EEGIKQKLEKKEGLFRMNMMGKRVNFAARSVISPDPNIETREIGVPPVFASKLTYPEPVT 486
Query: 566 PWNVTLLRKMVIN 578
N L ++ I+
Sbjct: 487 EINHQWLMRLRIH 499
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 29/48 (60%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVIN 61
F RSVI+PDP + IGVP FA LTYP PVT N L ++ I+
Sbjct: 452 FAARSVISPDPNIETREIGVPPVFASKLTYPEPVTEINHQWLMRLRIH 499
>gi|337283878|ref|YP_004623352.1| DNA-directed RNA polymerase subunit alpha [Pyrococcus yayanosii
CH1]
gi|334899812|gb|AEH24080.1| DNA-directed RNA polymerase subunit alpha [Pyrococcus yayanosii
CH1]
Length = 907
Score = 162 bits (409), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 139/509 (27%), Positives = 215/509 (42%), Gaps = 147/509 (28%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHI 191
QE++++S V+V P T++ G+ I GG+ D MG I G C TCG +C GH GHI
Sbjct: 19 QEIRKMSAVEVTVPDTYDDDGYPIEGGVMDKRMGVIDP-GLRCETCGARAGECPGHFGHI 77
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEET 251
EL PVI+ F + + +L+ +C C +IKL D
Sbjct: 78 ELARPVIHVGFAKTIHRILESTCREC--------------GRIKLTD------------- 110
Query: 252 LFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRK 311
+ ++ +++ + G + ++N ++ + R V
Sbjct: 111 ---------------EEIEEYMKKLELAGNRRSEVN------KILKEIHKKARERMV--- 146
Query: 312 CIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQG-----YVMA 366
C C P I +++ I IRK EQG +M
Sbjct: 147 CPHCGAPQFPIKFEKPTIYWE-----------------------IRKDEQGNEYRHRMMP 183
Query: 367 SEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPV 426
+EV +K+ + +P+L E + M + L VPP +RP
Sbjct: 184 TEVRDRLEKIPDKD-------LPLLGLHPEKSRPEWMVLTVLPVPPVTVRP--------- 227
Query: 427 EHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNS------- 479
S+ + + + DL + + IR +NN+L+ +
Sbjct: 228 -------------------SITLETGIRAEDDLTHKLVDIIR---INNRLKQNIEAGAPQ 265
Query: 480 ------WHELQYNVDLLMDAKLNINKTTG--------AHQIDGLKQMLDGKTGMIRQNMM 525
W LQY+V ++ N+T+G + L Q L GK G R N+
Sbjct: 266 LIIEDLWDLLQYHVTTYIN-----NETSGIPPAKHKSGRTLKTLAQRLKGKEGRFRGNLS 320
Query: 526 GKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPG 585
GKRVNF+ R+VI+PDP ++I+ +GVP+E A LT P VT +N+ LRKMV+NGP YPG
Sbjct: 321 GKRVNFSARTVISPDPMISINEVGVPIEIAMELTVPEKVTEFNIEKLRKMVLNGPEKYPG 380
Query: 586 ANMIQNEDGSVVRISSSQAVQRESLAKRL 614
AN + + +G +RI S RE LA+RL
Sbjct: 381 ANYVIDPEGRRIRIMDS---NRELLAERL 406
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 57/84 (67%), Gaps = 3/84 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP ++I+ +GVP+E A LT P VT +N+ LRKMV+NGP YPGAN +
Sbjct: 326 FSARTVISPDPMISINEVGVPIEIAMELTVPEKVTEFNIEKLRKMVLNGPEKYPGANYVI 385
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ +G +RI S RE LA+RL
Sbjct: 386 DPEGRRIRIMDS---NRELLAERL 406
>gi|440635899|gb|ELR05818.1| hypothetical protein GMDG_01895 [Geomyces destructans 20631-21]
Length = 1708
Score = 162 bits (409), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 98/261 (37%), Positives = 145/261 (55%), Gaps = 11/261 (4%)
Query: 363 YVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKE--LIATDIMFIRSLVVPPNNLRPLSM 420
YV EV A L+ E L + ++K+ ++ ++ F+++L+VPPN RP +
Sbjct: 332 YVNPMEVRASLTLLFEKEQEILSLVYASRSSSKKAAVVTSEFFFLQTLLVPPNKYRPEAR 391
Query: 421 EQMPPV-EHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNS 479
+ E +N LY+ IL + + + N +D K R D + LQ S
Sbjct: 392 TGAGEIAEAQQNALYKQILTAGHMTAQISKELDNPALADT-----KYRRRDF--SDLQES 444
Query: 480 WHELQYNVDLLMDAKLN-INKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
W +LQ +V+ L+D N I G DG+KQ L+ K G+ R+NMMGKRVNFA RSVI+
Sbjct: 445 WVKLQDSVNSLIDRDRNPIQGAAGKKNEDGIKQKLEKKEGLFRKNMMGKRVNFAARSVIS 504
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVR 598
PDP + + IGVP FA+ LTYP PVT N L++ VING + +PGA I+NE+G V+
Sbjct: 505 PDPNIETNEIGVPPVFARKLTYPEPVTSHNFKELQQAVINGADKWPGAAAIENENGQVIN 564
Query: 599 ISSSQAVQRESLAKRLITPEG 619
+ + +R+SLA +L+ G
Sbjct: 565 LRTKTPDERQSLANQLLASSG 585
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 72/127 (56%), Gaps = 4/127 (3%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGD-PCTTCGNNYT 182
+ + + E+K+LSV + + TF++L + +PGGLYD A+G GD CTTC
Sbjct: 14 VDFAFLSQDEIKRLSVKAIQNTTTFDTLLNPVPGGLYDPALGAW---GDIQCTTCHLGAL 70
Query: 183 KCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYV 242
C GH+GHI LPVPV + F + LL+ C CH + L+ +++L+ AG +
Sbjct: 71 SCPGHVGHITLPVPVYHPTFMDQLLRLLRAKCAYCHHFKMSRKDVNLYHYKLRLIQAGLL 130
Query: 243 TQAKDLE 249
+ A++L+
Sbjct: 131 SAAEELD 137
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 57/86 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IGVP FA+ LTYP PVT N L++ VING + +PGA I+
Sbjct: 497 FAARSVISPDPNIETNEIGVPPVFARKLTYPEPVTSHNFKELQQAVINGADKWPGAAAIE 556
Query: 74 NEDGSVVRISSSQAVQRESLAKRLIT 99
NE+G V+ + + +R+SLA +L+
Sbjct: 557 NENGQVINLRTKTPDERQSLANQLLA 582
>gi|154296469|ref|XP_001548665.1| hypothetical protein BC1G_12809 [Botryotinia fuckeliana B05.10]
Length = 1774
Score = 162 bits (409), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 105/293 (35%), Positives = 160/293 (54%), Gaps = 12/293 (4%)
Query: 332 SFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVL 391
S +D D + +D S SS + Q YV A EV+A L+ E L +
Sbjct: 290 SLDVDGDVV---MDGSATSSSKPRVAPLPQRYVDAMEVKASLTLLFEKEQEILSLVYNSR 346
Query: 392 DTTKE--LIATDIMFIRSLVVPPNNLRPLSMEQMPPV-EHSRNKLYQSILYSCGSLKSVI 448
+ K+ + D+ F+++L+VPPN RP + + E +N LY+ IL S ++ +
Sbjct: 347 SSAKKPSAVKADMFFLQTLLVPPNRYRPEAKTGDGEIAEAQQNSLYKQILKSADTVNQIY 406
Query: 449 MAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLN-INKTTGAHQID 507
+ ++N ++ S+ L+ + D + LQ + +Q V+ L+D N I G D
Sbjct: 407 LDIQNPDRPSQ-SQTLR--KRDFFD--LQEACCSMQDAVNSLIDRDRNPIQGAAGKKNED 461
Query: 508 GLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPW 567
G+KQ L+ K G+ R+NMMGKRVNFA RSVI+PDP + + IGVP FAK LTYP PVT
Sbjct: 462 GIKQKLEKKEGLFRKNMMGKRVNFAARSVISPDPNIETNEIGVPPVFAKKLTYPEPVTSH 521
Query: 568 NVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPEGN 620
N +++ VING + +PGA I+NE+G V+ + S +R +LA +L+ N
Sbjct: 522 NFKEMQQAVINGVDKWPGAAAIENENGQVINLRSKTQDERMALANQLLASSSN 574
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 74/128 (57%), Gaps = 2/128 (1%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNY 181
E + + + E+K LSV ++ +P+TF+SL H +PGGLYD A+G + CTTC +
Sbjct: 12 ESVDFAFLSTAEIKSLSVKRIENPVTFDSLLHPVPGGLYDPALGAWGDNN--CTTCNLSS 69
Query: 182 TKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGY 241
C GH GHI+LP PV + F V LL+ C CH+ + ++ +++L+ G
Sbjct: 70 FSCPGHAGHIDLPAPVYHPTFMDQVLRLLRSKCKYCHQFRMSRKEVNRYVCKLRLIQQGL 129
Query: 242 VTQAKDLE 249
++ A+++E
Sbjct: 130 LSAAEEIE 137
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 56/86 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IGVP FAK LTYP PVT N +++ VING + +PGA I+
Sbjct: 485 FAARSVISPDPNIETNEIGVPPVFAKKLTYPEPVTSHNFKEMQQAVINGVDKWPGAAAIE 544
Query: 74 NEDGSVVRISSSQAVQRESLAKRLIT 99
NE+G V+ + S +R +LA +L+
Sbjct: 545 NENGQVINLRSKTQDERMALANQLLA 570
>gi|347831222|emb|CCD46919.1| similar to DNA-directed RNA polymerase I subunit [Botryotinia
fuckeliana]
Length = 1703
Score = 161 bits (408), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 105/293 (35%), Positives = 160/293 (54%), Gaps = 12/293 (4%)
Query: 332 SFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVL 391
S +D D + +D S SS + Q YV A EV+A L+ E L +
Sbjct: 290 SLDVDGDVV---MDGSATSSSKPRVAPLPQRYVDAMEVKASLTLLFEKEQEILSLVYNSR 346
Query: 392 DTTKE--LIATDIMFIRSLVVPPNNLRPLSMEQMPPV-EHSRNKLYQSILYSCGSLKSVI 448
+ K+ + D+ F+++L+VPPN RP + + E +N LY+ IL S ++ +
Sbjct: 347 SSAKKPSAVKADMFFLQTLLVPPNRYRPEAKTGDGEIAEAQQNSLYKQILKSADTVNQIY 406
Query: 449 MAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLN-INKTTGAHQID 507
+ ++N ++ S+ L+ + D + LQ + +Q V+ L+D N I G D
Sbjct: 407 LDIQNPDRPSQ-SQTLR--KRDFFD--LQEACCSMQDAVNSLIDRDRNPIQGAAGKKNED 461
Query: 508 GLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPW 567
G+KQ L+ K G+ R+NMMGKRVNFA RSVI+PDP + + IGVP FAK LTYP PVT
Sbjct: 462 GIKQKLEKKEGLFRKNMMGKRVNFAARSVISPDPNIETNEIGVPPVFAKKLTYPEPVTSH 521
Query: 568 NVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPEGN 620
N +++ VING + +PGA I+NE+G V+ + S +R +LA +L+ N
Sbjct: 522 NFKEMQQAVINGVDKWPGAAAIENENGQVINLRSKTQDERMALANQLLASSSN 574
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 75/128 (58%), Gaps = 2/128 (1%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNY 181
E + + + E+K LSV ++ +P+TF+SL H +PGGLYD A+G + + CTTC +
Sbjct: 12 ESVDFAFLSTAEIKSLSVKRIENPVTFDSLLHPVPGGLYDPALGAWGD--NNCTTCNLSS 69
Query: 182 TKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGY 241
C GH GHI+LP PV + F V LL+ C CH+ + ++ +++L+ G
Sbjct: 70 FSCPGHAGHIDLPAPVYHPTFMDQVLRLLRSKCKYCHQFRMSRKEVNRYVCKLRLIQQGL 129
Query: 242 VTQAKDLE 249
++ A+++E
Sbjct: 130 LSAAEEIE 137
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 56/86 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IGVP FAK LTYP PVT N +++ VING + +PGA I+
Sbjct: 485 FAARSVISPDPNIETNEIGVPPVFAKKLTYPEPVTSHNFKEMQQAVINGVDKWPGAAAIE 544
Query: 74 NEDGSVVRISSSQAVQRESLAKRLIT 99
NE+G V+ + S +R +LA +L+
Sbjct: 545 NENGQVINLRSKTQDERMALANQLLA 570
>gi|218198539|gb|EEC80966.1| hypothetical protein OsI_23688 [Oryza sativa Indica Group]
Length = 1350
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 133/543 (24%), Positives = 239/543 (44%), Gaps = 98/543 (18%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
+ +Y D E+K++SV ++ ++ +PGGL D AMGP ++ D C +CG +
Sbjct: 110 IHFSFYNDDEIKRISVKQITKSDRVDAKNCPVPGGLLDPAMGPTNDT-DTCKSCGQQSIR 168
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVT 243
C GH GHIEL P+ N L F ++ LL+++CF CHK + + N+++LL G +
Sbjct: 169 CPGHFGHIELAKPLFNPLLFMSLKNLLQVTCFHCHKFRLNKEQVDRYTNELELLVRGDIA 228
Query: 244 QAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDI-NDYKGGEELRSAF-VA 301
AK NL +++ D ++ + + N +L+ A +
Sbjct: 229 HAK----------NLEDLGGKVLSKEDDETEATSGDKSARSERENKTWTSIQLKEALSIF 278
Query: 302 QVLSRHVKRKCIFCA-------TPI-------NAISYQQRKIIKSFKIDKDN-------- 339
L + ++KC C PI S + I + K+ D
Sbjct: 279 SKLMKKRQKKCAHCEKKNPIIKNPIYGWLIKDTTSSSVRANAIANAKLSGDGHVNDSRET 338
Query: 340 ----LDQSLD-------KSLNKSS-------NQIIRKREQGYVMASEVEADFKKLWTNEH 381
LD+ L +S N++ +++ + +++ +EVE+ K LW E
Sbjct: 339 GVSGLDEELTSPGTLSRRSTNETRRISDDTIKEMVASSGKKHLLTTEVESILKDLWKKEA 398
Query: 382 LFLKCLIP----VLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSI 437
F L L +++ ++ F+++L+V PN RP + +EH +N L +
Sbjct: 399 RFCMLLCDFQQNTLSVSEKRRGYEMFFLKNLLVAPNRFRPSISSSLGIMEHPQNVLLSKV 458
Query: 438 LYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNI 497
S +L+ I A + E + W +LQ NV++L D+ +
Sbjct: 459 QESNLALQQSIAASNHME--------------------VLRRWMDLQRNVNVLYDSSKGL 498
Query: 498 NKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKT 557
+K +G++Q+L+ K G++RQ MMGKRVN+A R I
Sbjct: 499 SKN--EKNANGIRQLLEKKEGILRQKMMGKRVNYACRFYII-----------------SI 539
Query: 558 LTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
L + VTPWN L++ + NG +++PGA ++ + ++ ++ ++ +R ++AK L
Sbjct: 540 LFHVQKVTPWNARKLQEAINNGADIHPGATHYRD-NNNMYKLQAAPP-KRRAIAKMLPAS 597
Query: 618 EGN 620
G+
Sbjct: 598 RGS 600
>gi|407928328|gb|EKG21187.1| RNA polymerase alpha subunit [Macrophomina phaseolina MS6]
Length = 1711
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 94/258 (36%), Positives = 143/258 (55%), Gaps = 12/258 (4%)
Query: 361 QGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSM 420
Q YV ++EV + ++L+ E + L V + FI+ L+VPP+ RP +
Sbjct: 336 QAYVSSTEVRSSLERLFEKER---EILSHVYSPRAGNATAGMFFIQCLLVPPSKFRPEAK 392
Query: 421 EQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSW 480
E S N LY+ IL +C ++ + +Q + ++G R T ++ LQ++
Sbjct: 393 TGDAIAEASINSLYKGILSACDKMRQI-------QQEMMTGTGVEGRRARTYDD-LQSAT 444
Query: 481 HELQYNVDLLMDAKLN-INKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
ELQ V+ L+D N G DG+KQ L+ K G+ R+NMMGKRVNFA RSVI+P
Sbjct: 445 AELQDAVNSLIDRDRNPTQGVAGKRNEDGIKQKLEKKEGLFRKNMMGKRVNFAARSVISP 504
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
D L + IGVP FAK L YP PVT N L++ V+NGP+ +PGA +++EDG+V +
Sbjct: 505 DVNLQSNEIGVPPVFAKKLHYPEPVTSHNFDELKEAVLNGPDKWPGAVAVEDEDGNVTLL 564
Query: 600 SSSQAVQRESLAKRLITP 617
+ +R ++A +L+ P
Sbjct: 565 AKKNHEERMAIANQLLAP 582
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 121/257 (47%), Gaps = 42/257 (16%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHI 191
++++ LSV ++ S TF++LGH +PGGL+ +G G PC TC + +C GH GHI
Sbjct: 28 KDIESLSVKRIVSATTFDTLGHPVPGGLHSAELGAF--MGAPCATCNLDEYRCPGHAGHI 85
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL--- 248
ELPVP + F + LL+ C CH + + L+ +++L+ G + +A ++
Sbjct: 86 ELPVPAYHPTFMDQLLRLLRAQCQYCHGLKMSKVITNLYSCKLRLIHHGLLKEAAEIDNL 145
Query: 249 ----------EETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSA 298
E + E+ ++Q +++V+ L K+ G E R+
Sbjct: 146 EVPKVKGSKEEGEDVDSEDSDAEAQDIIQKREAYVKRALKEMKKM-------GTPEKRTE 198
Query: 299 FVAQVLSRHVK---------RKCIFCATPINAIS--YQQRKIIKSFK--IDKDNLDQSLD 345
+A+ +K RKC C A+S +++ + +K F+ + K + + ++
Sbjct: 199 AIAEERRFVIKDFLADISKSRKCASCG----AVSPTFRKDRYVKIFRKPLSKKDKNANIQ 254
Query: 346 KSLNKSS---NQIIRKR 359
K + S+ ++ RKR
Sbjct: 255 KGVATSAPIVEEMARKR 271
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 56/87 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PD L + IGVP FAK L YP PVT N L++ V+NGP+ +PGA ++
Sbjct: 496 FAARSVISPDVNLQSNEIGVPPVFAKKLHYPEPVTSHNFDELKEAVLNGPDKWPGAVAVE 555
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
+EDG+V ++ +R ++A +L+ P
Sbjct: 556 DEDGNVTLLAKKNHEERMAIANQLLAP 582
>gi|367017944|ref|XP_003683470.1| hypothetical protein TDEL_0H04000 [Torulaspora delbrueckii]
gi|359751134|emb|CCE94259.1| hypothetical protein TDEL_0H04000 [Torulaspora delbrueckii]
Length = 1665
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 96/296 (32%), Positives = 164/296 (55%), Gaps = 7/296 (2%)
Query: 327 RKIIKSFKIDKDNLDQSLDKSLNKSSNQIIR-KREQGYVMASEVEADFKKLWTNE-HLFL 384
+K +S K+ + ++D+ N N R K Y++++EV + L+ E H+
Sbjct: 276 KKQQQSKKLGGSDEGDAVDEDFNADRNSSARPKSGSTYILSTEVRNILRALFKKEQHVLQ 335
Query: 385 KCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSL 444
+ +++++ D F+ ++VPP R S E+++N+L IL +
Sbjct: 336 YVFHSRPNVSRKVVKADNFFMEVVLVPPTRFRLPSKMGEEVHENTQNQLLSKILTT---- 391
Query: 445 KSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAH 504
S+++ N E S + + + + ++L N++ +Q +V+ +D+ +
Sbjct: 392 -SLLIRDLNDEMSTIQKDKVSVDDRRVIFSRLMNAFVTIQNDVNAFIDSTKAQGSASSKI 450
Query: 505 QIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPV 564
+ G+KQ L+ K G+ R++MMGKRVN+A RSVI+PDP + + IGVP FA LTYP PV
Sbjct: 451 PVPGVKQALEKKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFATKLTYPEPV 510
Query: 565 TPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPEGN 620
T +N+ LR+ VINGP+ +PGA+ IQNEDG++V + QR++LA +L+TP N
Sbjct: 511 TAYNIAELRQAVINGPDKWPGASQIQNEDGTLVSLVGMTLEQRKALANQLMTPSSN 566
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 62/87 (71%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP + + IGVP FA LTYP PVT +N+ LR+ VINGP+ +PGA+ IQ
Sbjct: 477 YAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTAYNIAELRQAVINGPDKWPGASQIQ 536
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDG++V + QR++LA +L+TP
Sbjct: 537 NEDGTLVSLVGMTLEQRKALANQLMTP 563
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 74/134 (55%), Gaps = 4/134 (2%)
Query: 119 VVPEILKLKY--YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTT 176
V EI L + T Q+++ LS ++ +P ++LGH I GGLYDL++G + C+T
Sbjct: 7 VGSEITSLDFNILTPQDIRNLSAKQITNPTVLDNLGHPISGGLYDLSLGAFLR--NLCST 64
Query: 177 CGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKL 236
CG + C GH GHIELPVP N LFF + + L+ C CH + + ++KL
Sbjct: 65 CGLDEKFCPGHQGHIELPVPCYNPLFFNQLYIYLRSCCLFCHHFRLKKVEVHRYACKLKL 124
Query: 237 LDAGYVTQAKDLEE 250
L G + ++ L++
Sbjct: 125 LQYGLIDESYRLDQ 138
>gi|170590678|ref|XP_001900098.1| RNA polymerase Rpb1, domain 2 family protein [Brugia malayi]
gi|158592248|gb|EDP30848.1| RNA polymerase Rpb1, domain 2 family protein [Brugia malayi]
Length = 1687
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 99/290 (34%), Positives = 158/290 (54%), Gaps = 24/290 (8%)
Query: 347 SLNKSSNQIIRKREQGYVMA---------SEVEADFKKLWTNEHLFLKCLIPVLDTTKEL 397
SL +S QI+R + Q + +EV F+ LW N+ LK + PV D+ +
Sbjct: 299 SLASTSEQILRDQMQWVLRGNCDKLAWRGAEVREHFRILWQNDGPLLKKVFPVFDSEDDR 358
Query: 398 -IATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQ 456
D++F +++VPP RP+ + + E+ ++ + +L + +++++ +A+ +
Sbjct: 359 HCPLDVLFCEAVLVPPTKYRPVRIFKGDKFENPQSVNLRKLLEASETIRAIRLALSGNNE 418
Query: 457 SDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAH-QIDGLKQMLDG 515
+L+ + + G T+ K+ N++ LQ + + D L+ K T Q+ G+KQ+L+
Sbjct: 419 KAVLNLVSENVLGQTMQAKMHNAYLILQQRMGAIFDQDLD--KWTDVRIQVPGIKQILEK 476
Query: 516 KTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKM 575
K G+ R NMMGKRVNFA RSVITPDPYL+ID IG+P FAK LT V N+ LRKM
Sbjct: 477 KQGLFRMNMMGKRVNFACRSVITPDPYLDIDEIGIPELFAKKLTVTESVNAMNLVRLRKM 536
Query: 576 VINGPNVYPG-----------ANMIQNEDGSVVRISSSQAVQRESLAKRL 614
+ NGPN +PG AN IQ +S ++ +R++ AKRL
Sbjct: 537 IKNGPNFHPGYELLLFKNSGSANFIQKPGRYTQVLSVNKRNERDAAAKRL 586
Score = 99.0 bits (245), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 3/128 (2%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
L+L+ Y E++++SV+++ F+ +GH I GGLYDL +GP+ E D C TC T
Sbjct: 18 LQLRCYLPHEIERISVLRITETKAFDEIGHPISGGLYDLRLGPL-ETFDTCETCHQQGTY 76
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKI--NIPATSQLLFINQIKLLDAGY 241
C GH+GHI+L +P N L F L+ +C CH++ N L + Q++ LD G
Sbjct: 77 CPGHMGHIQLDIPAFNPLLFGFTFSLMNGTCVQCHRLTCNSSGLPAKLLLAQLRALDLGL 136
Query: 242 VTQAKDLE 249
V+ A++L+
Sbjct: 137 VSVAQELD 144
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 54/95 (56%), Gaps = 11/95 (11%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPG----- 68
F RSVITPDPYL+ID IG+P FAK LT V N+ LRKM+ NGPN +PG
Sbjct: 492 FACRSVITPDPYLDIDEIGIPELFAKKLTVTESVNAMNLVRLRKMIKNGPNFHPGYELLL 551
Query: 69 ------ANMIQNEDGSVVRISSSQAVQRESLAKRL 97
AN IQ +S ++ +R++ AKRL
Sbjct: 552 FKNSGSANFIQKPGRYTQVLSVNKRNERDAAAKRL 586
>gi|367035594|ref|XP_003667079.1| hypothetical protein MYCTH_2312447 [Myceliophthora thermophila ATCC
42464]
gi|347014352|gb|AEO61834.1| hypothetical protein MYCTH_2312447 [Myceliophthora thermophila ATCC
42464]
Length = 1721
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 101/265 (38%), Positives = 148/265 (55%), Gaps = 10/265 (3%)
Query: 361 QGYVMASEVEADFKKLWTNEHLFLKCLI---PVLDTTKELIATDIMFIRSLVVPPNNLRP 417
Q Y+ EV + L+ E L L P +K L A D+ FI +L+VPPN RP
Sbjct: 340 QRYLSTMEVHKRLELLFEKEQEILSLLYNSKPRPRNSKPLTA-DMFFITALLVPPNRYRP 398
Query: 418 LS-MEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKL 476
+ M E +N LY+ IL S ++ + + ++ + + A +G R +++ L
Sbjct: 399 EARMGDSQISEAQQNNLYKMILRSASNVAQISREISSQTKE---TAADEGRRTRDMSS-L 454
Query: 477 QNSWHELQYNVDLLMDAKLN-INKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRS 535
+W ELQ V+ L+D N I +G+KQ L+ K G+ R+NMMGKRVNFA RS
Sbjct: 455 YQAWTELQDAVNSLIDRDKNPIQGAAAKRNEEGIKQKLEKKEGLFRKNMMGKRVNFAARS 514
Query: 536 VITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGS 595
VI+PDP + + IGVP FAK LTYP PVT N L++ VING + +PGA+ I+NE+G
Sbjct: 515 VISPDPNIETNEIGVPPVFAKKLTYPEPVTSHNFKDLQQAVINGVDKWPGASAIENENGQ 574
Query: 596 VVRISSSQAVQRESLAKRLITPEGN 620
++ + + R +LA +L+ P GN
Sbjct: 575 IINLRTKSLEDRIALANQLLAPTGN 599
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 120/247 (48%), Gaps = 40/247 (16%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDP-CTTCGNN 180
E ++ + + E++ +SV ++ + TF++L + IPGGLYD A+G GD C TC N
Sbjct: 12 ESVEFTFLSPDEIRSISVKRIENDSTFDNLLNPIPGGLYDPALGSW---GDSLCRTCNLN 68
Query: 181 YTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAG 240
+C GH GHIELPVPV + +F LL+ C CHK +P + ++LL G
Sbjct: 69 QAQCPGHPGHIELPVPVYHPVFMDQAYRLLRAQCVYCHKFRLPRHEIHKYTCMLRLLQVG 128
Query: 241 YVTQ--------AKDLEETL---------------FNEENLRLHPAQLVQLVDSHVQSIL 277
V + A DL E L EE LH + + + +++V+ +L
Sbjct: 129 LVHEANMIESFSASDLGEQLRKLRLSDVPTVEADEAEEEGNNLHDSTM-RARETYVRQVL 187
Query: 278 AHGTKICDIND-----YKGGEELRSAFVAQVLSRHVKRK-CIFCATPINAIS--YQQRKI 329
++ D ++G E+R A V + L++ VK K C C + IS Y++ +
Sbjct: 188 REHRLKVNVGDIRKGKHEGAAEMRRALVKEFLAQIVKEKRCRSC----DGISPVYRKDRW 243
Query: 330 IKSFKID 336
+K F+ D
Sbjct: 244 VKIFERD 250
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 57/87 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IGVP FAK LTYP PVT N L++ VING + +PGA+ I+
Sbjct: 510 FAARSVISPDPNIETNEIGVPPVFAKKLTYPEPVTSHNFKDLQQAVINGVDKWPGASAIE 569
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NE+G ++ + + R +LA +L+ P
Sbjct: 570 NENGQIINLRTKSLEDRIALANQLLAP 596
>gi|156047829|ref|XP_001589882.1| hypothetical protein SS1G_09604 [Sclerotinia sclerotiorum 1980]
gi|154693999|gb|EDN93737.1| hypothetical protein SS1G_09604 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1705
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 104/294 (35%), Positives = 159/294 (54%), Gaps = 12/294 (4%)
Query: 331 KSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPV 390
+S +D D + +D SS + Q YV A EV+A L+ E L +
Sbjct: 289 ESLDVDGDVV---MDGPATSSSKPRVAPLPQRYVDAMEVKASLTLLFEKEQEILSLVYNS 345
Query: 391 LDTTKE--LIATDIMFIRSLVVPPNNLRPLSMEQMPPV-EHSRNKLYQSILYSCGSLKSV 447
+ K+ ++ D+ F+++L+VPPN RP + + E +N LY+ IL S ++ +
Sbjct: 346 RSSVKKPSVVKADMFFLQTLLVPPNRYRPEAKTGDGEISEAQQNSLYKQILKSADTVNQI 405
Query: 448 IMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLN-INKTTGAHQI 506
+ ++N D S++ + D + LQ + +Q V+ L+D N I G
Sbjct: 406 YLDIQN---PDRPSQSATLRKRDFFD--LQEACCSMQDAVNSLIDRDRNPIQGAAGKKNE 460
Query: 507 DGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTP 566
DG+KQ L+ K G+ R+NMMGKRVNFA RSVI+PDP + + IGVP FAK LTYP PVT
Sbjct: 461 DGIKQKLEKKEGLFRKNMMGKRVNFAARSVISPDPNIETNEIGVPPVFAKKLTYPEPVTS 520
Query: 567 WNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPEGN 620
N +++ VING + +PGA I+NE+G V+ + S +R +LA +L+ N
Sbjct: 521 HNFKEMQQAVINGVDKWPGAAAIENENGQVINLRSKTQDERMALANQLLASSSN 574
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 76/128 (59%), Gaps = 2/128 (1%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNY 181
E ++ + + E+K LSV ++ +P+TF+SL H +PGGLYD A+G + + CTTC +
Sbjct: 12 ESVEFAFLSTAEIKSLSVKRIENPVTFDSLLHPVPGGLYDPALGAWGD--NNCTTCNLSS 69
Query: 182 TKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGY 241
C GH GHI+LP PV + F V LL+ C CH+ + ++ +++L+ G
Sbjct: 70 FSCPGHAGHIDLPAPVYHPTFMDQVLRLLRSKCKYCHQFKMSRKEVNRYVCKLRLIQQGL 129
Query: 242 VTQAKDLE 249
++ A++++
Sbjct: 130 LSAAEEID 137
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 56/86 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IGVP FAK LTYP PVT N +++ VING + +PGA I+
Sbjct: 485 FAARSVISPDPNIETNEIGVPPVFAKKLTYPEPVTSHNFKEMQQAVINGVDKWPGAAAIE 544
Query: 74 NEDGSVVRISSSQAVQRESLAKRLIT 99
NE+G V+ + S +R +LA +L+
Sbjct: 545 NENGQVINLRSKTQDERMALANQLLA 570
>gi|366994298|ref|XP_003676913.1| hypothetical protein NCAS_0F00730 [Naumovozyma castellii CBS 4309]
gi|342302781|emb|CCC70557.1| hypothetical protein NCAS_0F00730 [Naumovozyma castellii CBS 4309]
Length = 1674
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 93/259 (35%), Positives = 148/259 (57%), Gaps = 6/259 (2%)
Query: 363 YVMASEVEADFKKLWTNEHLFLKCLIPVL-DTTKELIATDIMFIRSLVVPPNNLRPLSME 421
Y++++EV + ++ E LK + + + + ++ D+ F+ +VVP R S
Sbjct: 322 YILSTEVRNILRAVFNKEQNVLKYVFHSKPNMSNKAVSADMFFMDVVVVPATRFRLPSKL 381
Query: 422 QMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWH 481
E+S+N+L IL + S+++ N E S L + + + ++L N++
Sbjct: 382 GDEVHENSQNQLLSKILTT-----SLLIRDLNDEMSKLQKDKVSADDRRIIFSRLMNAFV 436
Query: 482 ELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDP 541
+Q +V+ +D+ G I G+KQ L+ K G+ R++MMGKRVN+A RSVI+PDP
Sbjct: 437 TIQNDVNAFIDSTKAQGTAGGKLPIPGVKQALEKKEGLFRKHMMGKRVNYAARSVISPDP 496
Query: 542 YLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISS 601
+ + IGVP FA LTYP PVT +N+ LR+ VINGP+ +PGA IQNEDGS+V +
Sbjct: 497 NIETNEIGVPPVFATKLTYPEPVTSYNIAELRQAVINGPDKWPGATQIQNEDGSLVSLIG 556
Query: 602 SQAVQRESLAKRLITPEGN 620
QR++LA +L+TP N
Sbjct: 557 MSTEQRKALANQLMTPSSN 575
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 78/136 (57%), Gaps = 2/136 (1%)
Query: 130 TDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
T E++QLS ++ +P ++LGH I GGLYDL++G + C+TCG + C GH G
Sbjct: 20 TSDEIRQLSAKQITNPTVLDNLGHPITGGLYDLSLGAFLR--NLCSTCGLDEKFCPGHQG 77
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLE 249
HIELPVP N LFF + + L+ SC CH + + F ++++LL G + +A ++
Sbjct: 78 HIELPVPCYNPLFFNQLYIYLRTSCLFCHHFRLRSIEVHRFASKLRLLQFGLIDEAYQVD 137
Query: 250 ETLFNEENLRLHPAQL 265
+ N+ L A++
Sbjct: 138 QITINDLEDFLESAEM 153
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 61/87 (70%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP + + IGVP FA LTYP PVT +N+ LR+ VINGP+ +PGA IQ
Sbjct: 486 YAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTSYNIAELRQAVINGPDKWPGATQIQ 545
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS+V + QR++LA +L+TP
Sbjct: 546 NEDGSLVSLIGMSTEQRKALANQLMTP 572
>gi|389640261|ref|XP_003717763.1| DNA-directed RNA polymerase I subunit RPA1 [Magnaporthe oryzae
70-15]
gi|351640316|gb|EHA48179.1| DNA-directed RNA polymerase I subunit RPA1 [Magnaporthe oryzae
70-15]
gi|440471843|gb|ELQ40777.1| DNA-directed RNA polymerase I subunit RPA1 [Magnaporthe oryzae Y34]
gi|440483991|gb|ELQ64198.1| DNA-directed RNA polymerase I subunit RPA1 [Magnaporthe oryzae
P131]
Length = 1719
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 98/265 (36%), Positives = 147/265 (55%), Gaps = 13/265 (4%)
Query: 361 QGYVMASEVEADFKKLWTNEHLFLKCLI---PVLDTTKELIATDIMFIRSLVVPPNNLRP 417
Q Y+ A EV L+ E L P +TK + A + F+++L+VPPN RP
Sbjct: 327 QRYLSAREVLERLDLLFEKEQEVLSLFYNSKPSHKSTKHINAG-LFFVQTLLVPPNRFRP 385
Query: 418 LSMEQMPPV-EHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKL 476
+ + E +N LY++IL + L + ++N + LLS+ R L
Sbjct: 386 EARTGDSQINEAQQNSLYKAILKASTKLTQIFRDLQNP--TSLLSQ-----RHGKDTTIL 438
Query: 477 QNSWHELQYNVDLLMDAKLNINKTTGAHQID-GLKQMLDGKTGMIRQNMMGKRVNFAGRS 535
+W ELQ V+ L+D + + A ++ G+KQ L+ K G+ R+NMMGKRVN+A RS
Sbjct: 439 HEAWTELQDCVNTLIDNTKSPTQGAAAKALEEGIKQKLEKKEGLFRKNMMGKRVNYAARS 498
Query: 536 VITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGS 595
VI+PDP + + IGVP FA+ LTYP PVT N +++ VINGP+ +PGA I+NE+G
Sbjct: 499 VISPDPNIETNEIGVPPVFARKLTYPEPVTSHNFRDMQQAVINGPDKWPGAAAIENENGQ 558
Query: 596 VVRISSSQAVQRESLAKRLITPEGN 620
+V + + +R SLA +L+ P N
Sbjct: 559 IVNLRNKSQEERSSLANQLLAPTSN 583
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 58/87 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP + + IGVP FA+ LTYP PVT N +++ VINGP+ +PGA I+
Sbjct: 494 YAARSVISPDPNIETNEIGVPPVFARKLTYPEPVTSHNFRDMQQAVINGPDKWPGAAAIE 553
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NE+G +V + + +R SLA +L+ P
Sbjct: 554 NENGQIVNLRNKSQEERSSLANQLLAP 580
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 110/237 (46%), Gaps = 33/237 (13%)
Query: 133 EVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDP-CTTCGNNYTKCKGHIGHI 191
E++ SV ++ + TF++L + +PGGLYD A+G GD C TC + C GH GHI
Sbjct: 23 EIRAFSVRRIENDSTFDTLLNPVPGGLYDPALGAW---GDSVCATCNLGPSACPGHPGHI 79
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL--- 248
ELPVPV + +F V LL+ C CH+ + +I +LL G + +AK L
Sbjct: 80 ELPVPVYHPVFMDQVLRLLRSQCAYCHRFRMRRRDINRYICLFRLLQYGLLAEAKRLDLI 139
Query: 249 ----------------EETLFNEENLRLHPAQLVQLVDSHVQSIL-AHGTKICDI--NDY 289
E + + + +++ +++V+ +L H + +I +
Sbjct: 140 GDSLDGVSEGDTPKGGESETEDAQGGKTTEDVVIRKRNAYVRQVLQQHQISLGEIRKGKH 199
Query: 290 KGGEELRSAFVAQVLSRHVK-RKCIFC--ATPINAISYQQRKIIKSFKIDKDNLDQS 343
+G E+R V Q L K R C C +P +Y++ + +K F+ + DQ
Sbjct: 200 EGASEMRRDLVKQFLQDMTKSRICASCDGVSP----TYRKDRFVKIFEKPLSSKDQG 252
>gi|255941530|ref|XP_002561534.1| Pc16g12350 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211586157|emb|CAP93905.1| Pc16g12350 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1671
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 97/262 (37%), Positives = 151/262 (57%), Gaps = 14/262 (5%)
Query: 361 QGYVMASEVEADFKKLWTNEHLFLKCLI---PVLDTTKELIATDIMFIRSLVVPPNNLRP 417
Q ++ +SEV L+ E L+ + PV K I+ D FI+S++VPPN RP
Sbjct: 306 QEFMSSSEVYGALHLLFQKESEILQLVYNSRPVPKGVK-AISADTFFIKSILVPPNKYRP 364
Query: 418 LSMEQMPPV-EHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKL 476
+ V E +N + +IL C ++ + ++N+E+ + R ++ L
Sbjct: 365 AVQQGAGTVMEAQQNTSFNAILKGCDTINQISKEIQNEEEKTM-------SRARNYSDLL 417
Query: 477 QNSWHELQYNVDLLMDA-KLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRS 535
Q + +LQ V+ L+D + ++ + Q +G+KQ+L+ K G+ R+NMMGKRVNFA RS
Sbjct: 418 Q-AIVQLQDVVNGLIDRDRTSVTGSAALSQPNGIKQILEKKEGLFRKNMMGKRVNFAARS 476
Query: 536 VITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGS 595
VI+PDP + + IGVPL FAK LT+P PVT N L++ VINGP+ YPGA+ I+NE+G
Sbjct: 477 VISPDPNIEPNEIGVPLVFAKKLTFPEPVTNHNFWELKEAVINGPDKYPGASSIENENGQ 536
Query: 596 VVRISSSQAVQRESLAKRLITP 617
V+ + +R +LA +L+ P
Sbjct: 537 VINLKFKNLEERTALANQLLAP 558
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 65/100 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IGVPL FAK LT+P PVT N L++ VINGP+ YPGA+ I+
Sbjct: 472 FAARSVISPDPNIEPNEIGVPLVFAKKLTFPEPVTNHNFWELKEAVINGPDKYPGASSIE 531
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI 113
NE+G V+ + +R +LA +L+ P + + + +K+
Sbjct: 532 NENGQVINLKFKNLEERTALANQLLAPSNWRQKGSRNKKV 571
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 2/116 (1%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+++E+K LSV ++ + T +S + +PGGL D AMG + CTTC N C GH
Sbjct: 20 YSEEEIKALSVKRIHNTPTLDSFNNPVPGGLQDPAMGAWGDH--VCTTCRQNSFTCTGHP 77
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQ 244
GHIELPVP N FF + LL+ C C ++ + ++ +++LL G V +
Sbjct: 78 GHIELPVPFYNVTFFDHIFRLLRAQCVYCLRLQMGRNQVNMYTCKLRLLQYGLVDE 133
>gi|326475279|gb|EGD99288.1| DNA-directed RNA polymerase I [Trichophyton tonsurans CBS 112818]
Length = 1680
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 100/270 (37%), Positives = 150/270 (55%), Gaps = 17/270 (6%)
Query: 354 QIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKEL--IATDIMFIRSLVVP 411
Q+ Q YV +SE+ A L+ E L + K+ I+ ++ FI++++VP
Sbjct: 316 QVGDSESQQYVPSSEIHASLHFLFNKEQEILDLIYDSRPFVKKRSHISANMFFIKNILVP 375
Query: 412 PNNLRPLSMEQMPP--VEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRG 469
PN RP + +Q P +E +N + I+ C + + ++E+ S + IR
Sbjct: 376 PNKFRP-AAQQGPNEIMEAQQNTSFGRIIKLCDQINQI-----SRERQGDTSGTSRRIRD 429
Query: 470 --DTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGK 527
D L +Q LQ V+ L+D N ++ GA DG+KQ L+ K G+ R+NMMGK
Sbjct: 430 YRDLLQAIVQ-----LQDAVNSLIDRDRNPSQGLGAQNEDGIKQRLEKKDGLFRKNMMGK 484
Query: 528 RVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGAN 587
RVNFA RSVI+PDP + + IG+PL FAK LTYP PVT N L++ VINGP++YPGA
Sbjct: 485 RVNFAARSVISPDPNIETNEIGIPLVFAKKLTYPEPVTNHNYWELKQAVINGPDIYPGAA 544
Query: 588 MIQNEDGSVVRISSSQAVQRESLAKRLITP 617
++NE G VV + +R ++A L++P
Sbjct: 545 AVENELGQVVSLKFKTVDERVAIANLLLSP 574
Score = 92.0 bits (227), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 66/116 (56%), Gaps = 2/116 (1%)
Query: 130 TDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+D+E+K +SV ++++ + +S + IPGGLYD A+G + C+TC N C GH G
Sbjct: 21 SDEEIKAISVKRIYNTPSLDSFNNPIPGGLYDAALGAWGDH--ICSTCRQNSWSCAGHSG 78
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQA 245
HIELPV V N FF + LL+ C CH+ + + +++LL G + +A
Sbjct: 79 HIELPVHVYNVTFFDQLYRLLRSQCIYCHRFRMSRAQVNNYSCKLRLLQYGLIEEA 134
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 59/89 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IG+PL FAK LTYP PVT N L++ VINGP++YPGA ++
Sbjct: 488 FAARSVISPDPNIETNEIGIPLVFAKKLTYPEPVTNHNYWELKQAVINGPDIYPGAAAVE 547
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPED 102
NE G VV + +R ++A L++P +
Sbjct: 548 NELGQVVSLKFKTVDERVAIANLLLSPSN 576
>gi|326480372|gb|EGE04382.1| DNA-directed RNA polymerase I subunit [Trichophyton equinum CBS
127.97]
Length = 1680
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 100/270 (37%), Positives = 150/270 (55%), Gaps = 17/270 (6%)
Query: 354 QIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKEL--IATDIMFIRSLVVP 411
Q+ Q YV +SE+ A L+ E L + K+ I+ ++ FI++++VP
Sbjct: 316 QVGDSESQQYVPSSEIHASLHFLFNKEQEILDLIYDSRPFVKKRSHISANMFFIKNILVP 375
Query: 412 PNNLRPLSMEQMPP--VEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRG 469
PN RP + +Q P +E +N + I+ C + + ++E+ S + IR
Sbjct: 376 PNKFRP-AAQQGPNEIMEAQQNTSFGRIIKLCDQINQI-----SRERQGDTSGTSRRIRD 429
Query: 470 --DTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGK 527
D L +Q LQ V+ L+D N ++ GA DG+KQ L+ K G+ R+NMMGK
Sbjct: 430 YRDLLQAIVQ-----LQDAVNSLIDRDRNPSQGLGAQNEDGIKQRLEKKDGLFRKNMMGK 484
Query: 528 RVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGAN 587
RVNFA RSVI+PDP + + IG+PL FAK LTYP PVT N L++ VINGP++YPGA
Sbjct: 485 RVNFAARSVISPDPNIETNEIGIPLVFAKKLTYPEPVTNHNYWELKQAVINGPDIYPGAA 544
Query: 588 MIQNEDGSVVRISSSQAVQRESLAKRLITP 617
++NE G VV + +R ++A L++P
Sbjct: 545 AVENELGQVVSLKFKTVDERVAIANLLLSP 574
Score = 92.0 bits (227), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 66/116 (56%), Gaps = 2/116 (1%)
Query: 130 TDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+D+E+K +SV ++++ + +S + IPGGLYD A+G + C+TC N C GH G
Sbjct: 21 SDEEIKAISVKRIYNTPSLDSFNNPIPGGLYDAALGAWGDH--ICSTCRQNSWSCAGHSG 78
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQA 245
HIELPV V N FF + LL+ C CH+ + + +++LL G + +A
Sbjct: 79 HIELPVHVYNVTFFDQLYRLLRSQCIYCHRFRMSRAQVNNYSCKLRLLQYGLIEEA 134
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 59/89 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IG+PL FAK LTYP PVT N L++ VINGP++YPGA ++
Sbjct: 488 FAARSVISPDPNIETNEIGIPLVFAKKLTYPEPVTNHNYWELKQAVINGPDIYPGAAAVE 547
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPED 102
NE G VV + +R ++A L++P +
Sbjct: 548 NELGQVVSLKFKTVDERVAIANLLLSPSN 576
>gi|116204821|ref|XP_001228221.1| hypothetical protein CHGG_10294 [Chaetomium globosum CBS 148.51]
gi|88176422|gb|EAQ83890.1| hypothetical protein CHGG_10294 [Chaetomium globosum CBS 148.51]
Length = 1475
Score = 159 bits (401), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 88/225 (39%), Positives = 130/225 (57%), Gaps = 6/225 (2%)
Query: 398 IATDIMFIRSLVVPPNNLRPLS-MEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQ 456
++ D+ F+ +L+VPPN RP + M E +N LY+ IL S + + + + +
Sbjct: 211 LSADMFFVSTLLVPPNRYRPEARMGDSQISEAQQNSLYKLILRSASLVAQISREISGQTK 270
Query: 457 SDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLN-INKTTGAHQIDGLKQMLDG 515
D++ E+ R + L +W ELQ V+ L+D N + +G+KQ L+
Sbjct: 271 EDMMDES----RRTRDMSSLYQAWTELQDAVNSLIDRDKNPVQGAAAKRNEEGIKQKLEK 326
Query: 516 KTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKM 575
K G+ R+NMMGKRVNFA RSVI+PDP + + IGVP FA+ LTYP PVT N L++
Sbjct: 327 KEGLFRKNMMGKRVNFAARSVISPDPNIETNEIGVPPVFARKLTYPEPVTSHNFKDLQQA 386
Query: 576 VINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPEGN 620
VING + +PGA I+NE+G +V + + R SLA +L+ P GN
Sbjct: 387 VINGVDKWPGAAAIENENGQIVNLRAKSLEDRVSLANQLLAPTGN 431
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 99/210 (47%), Gaps = 18/210 (8%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDP-CTTCGNN 180
E ++ + T +E++ +SV ++ + TF++L + IPGGLYD A+G GD C TC N
Sbjct: 12 ESVEFTFLTAEEIRSISVKRIENDSTFDNLLNPIPGGLYDPALGSW---GDALCLTCNLN 68
Query: 181 YTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAG 240
+C GH GHIELPVPV + +F LL+ C CH+ +P + +++ G
Sbjct: 69 QAQCPGHPGHIELPVPVYHPVFMDQAYRLLRAQCVYCHRFRLPRHEIHKYTCMFRVVQVG 128
Query: 241 YVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFV 300
+ +A +E ++ +L L + + G + D G R +V
Sbjct: 129 LIHEAHMIESFSVSDLGEQLRNLTLSDVPNPEQDEAEEEGGNLHD-----GTMRARETYV 183
Query: 301 AQVL---------SRHVKRKCIFCATPINA 321
QVL RH +R+ + P++A
Sbjct: 184 RQVLRDHRLKVNIGRHQERQARGNSKPLSA 213
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 56/87 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IGVP FA+ LTYP PVT N L++ VING + +PGA I+
Sbjct: 342 FAARSVISPDPNIETNEIGVPPVFARKLTYPEPVTSHNFKDLQQAVINGVDKWPGAAAIE 401
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NE+G +V + + R SLA +L+ P
Sbjct: 402 NENGQIVNLRAKSLEDRVSLANQLLAP 428
>gi|367055126|ref|XP_003657941.1| hypothetical protein THITE_2124200 [Thielavia terrestris NRRL 8126]
gi|347005207|gb|AEO71605.1| hypothetical protein THITE_2124200 [Thielavia terrestris NRRL 8126]
Length = 1722
Score = 158 bits (400), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 99/265 (37%), Positives = 146/265 (55%), Gaps = 10/265 (3%)
Query: 361 QGYVMASEVEADFKKLWTNEHLFLKCLI---PVLDTTKELIATDIMFIRSLVVPPNNLRP 417
Q ++ EV + L+ E L L P ++K L A D+ FIR+L+VPPN RP
Sbjct: 338 QRFLNTMEVHKRLELLFEKEQEVLSLLYNSKPRPRSSKPLTA-DMFFIRTLLVPPNRYRP 396
Query: 418 LSMEQMPPV-EHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKL 476
+ V E +N LY+ I+ + + + ++ + E G R +++ L
Sbjct: 397 EGRQGDGEVTEAQQNSLYKMIIARASMVTQITREINSQTKETAEDE---GRRTRDMSS-L 452
Query: 477 QNSWHELQYNVDLLMDAKLN-INKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRS 535
+W ELQ V+ L+D N I G +G+KQ L+ K G+ R+NMMGKRVNFA RS
Sbjct: 453 YQAWTELQDAVNSLVDRDKNPIQGAAGKRNEEGIKQKLEKKEGLFRKNMMGKRVNFAARS 512
Query: 536 VITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGS 595
VI+PDP + + IGVP FA+ LTYP PVT N L++ VING + +PGA I+NE+G
Sbjct: 513 VISPDPNIETNEIGVPPVFARKLTYPEPVTSHNFKDLQQAVINGVDKWPGAAAIENENGQ 572
Query: 596 VVRISSSQAVQRESLAKRLITPEGN 620
++ + + R +LA +L+ P GN
Sbjct: 573 IINLRTKSLEDRVALANQLLAPTGN 597
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 134/272 (49%), Gaps = 41/272 (15%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDP-CTTCGNN 180
E ++ + + E++ +SV ++ + TF++L + +PGGLYD A+G GD C TC N
Sbjct: 12 ESVEFTFLSADEIRAISVKRIENDQTFDNLKNPVPGGLYDPALGSW---GDTLCRTCNLN 68
Query: 181 YTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAG 240
+C GH GHIELPVPV + +F LL+ C CH+ +P + ++LL G
Sbjct: 69 QAQCPGHPGHIELPVPVYHPIFMDQAYRLLRAQCVYCHRFRLPRHEIHRYTCMLRLLQVG 128
Query: 241 YVTQAK--------DLEETL---------------FNEENLRLHPAQLVQLVDSHVQSIL 277
+ +A+ +L E L EE +H + ++ +++V+ +L
Sbjct: 129 LLHEAQMIDAFSPSELGEQLKSMRLSDVPSAGDDEAEEEGNNVHES-AIRAREAYVRHVL 187
Query: 278 -AHG--TKICDI--NDYKGGEELRSAFVAQVLSRHVK-RKCIFCATPINAIS--YQQRKI 329
HG + DI ++G E+R A + + L+ VK ++C C + IS Y++ +
Sbjct: 188 QEHGLHVNLGDIRKGKHEGAAEMRRALIKEFLALMVKDKRCRSC----DGISPVYRKDRS 243
Query: 330 IKSFKID-KDNLDQSLDKSLNKSSNQIIRKRE 360
++ F+ D D ++ ++ K S+ + R+
Sbjct: 244 VRIFERDLSDKEKAAMAQAGRKRSDALAISRK 275
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 60/100 (60%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IGVP FA+ LTYP PVT N L++ VING + +PGA I+
Sbjct: 508 FAARSVISPDPNIETNEIGVPPVFARKLTYPEPVTSHNFKDLQQAVINGVDKWPGAAAIE 567
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI 113
NE+G ++ + + R +LA +L+ P + +K+
Sbjct: 568 NENGQIINLRTKSLEDRVALANQLLAPTGNNFSGLRNKKV 607
>gi|207340851|gb|EDZ69074.1| YOR341Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 1317
Score = 158 bits (400), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 89/225 (39%), Positives = 135/225 (60%), Gaps = 5/225 (2%)
Query: 396 ELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKE 455
+L+ D F+ LVVPP R S E+S+N+L +L + S+++ N +
Sbjct: 1 KLVKADSFFMDVLVVPPTRFRLPSKLGEEVHENSQNQLLSKVLTT-----SLLIRDLNDD 55
Query: 456 QSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDG 515
S L + + + ++L N++ +Q +V+ +D+ +T+G I G+KQ L+
Sbjct: 56 LSKLQKDKVSLEDRRVIFSRLMNAFVTIQNDVNAFIDSTKAQGRTSGKVPIPGVKQALEK 115
Query: 516 KTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKM 575
K G+ R++MMGKRVN+A RSVI+PDP + + IGVP FA LTYP PVT +N+ LR+
Sbjct: 116 KEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFAVKLTYPEPVTAYNIAELRQA 175
Query: 576 VINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPEGN 620
VINGP+ +PGA IQNEDGS+V + QR++LA +L+TP N
Sbjct: 176 VINGPDKWPGATQIQNEDGSLVSLIGMSVEQRKALANQLLTPSSN 220
Score = 99.0 bits (245), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 65/100 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP + + IGVP FA LTYP PVT +N+ LR+ VINGP+ +PGA IQ
Sbjct: 131 YAARSVISPDPNIETNEIGVPPVFAVKLTYPEPVTAYNIAELRQAVINGPDKWPGATQIQ 190
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI 113
NEDGS+V + QR++LA +L+TP + +K+
Sbjct: 191 NEDGSLVSLIGMSVEQRKALANQLLTPSSNVSTHTLNKKV 230
>gi|440295347|gb|ELP88260.1| DNA-directed RNA polymerase I subunit RPA1, putative [Entamoeba
invadens IP1]
Length = 1566
Score = 158 bits (399), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 142/528 (26%), Positives = 233/528 (44%), Gaps = 80/528 (15%)
Query: 126 LKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCK 185
+Y+ E++ LSV +V TF+ LG+ GLYD ++G I RG C TCG N C
Sbjct: 22 FDFYSADEIRHLSVKEVTKGATFDLLGNPEENGLYDPSLGVIERRG-VCRTCGLNEDNCP 80
Query: 186 GHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKL--LDAGYVT 243
GH GH EL P+ N L F + LLL+ C C + A+ Q L I+L LD +
Sbjct: 81 GHFGHFELEEPMYNPLMFDQLILLLRSICLEC--FTLKASQQTLLGVAIELARLDKNDIG 138
Query: 244 QAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFV--- 300
A + E EE A+ VQ+ + + L H + + DY+ + + +
Sbjct: 139 GALAINE--LAEE------AKKVQMRANASRGKLKHEQENEEY-DYETDVNISNKLLKIF 189
Query: 301 AQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKRE 360
S+ +K++ + T I Q+R ++KSF + +L Q K S +I +
Sbjct: 190 ENECSKRIKKEPGYIHTEI-----QKRNVVKSFLMHMASLSQKKCPCCGKISPKIKKSDN 244
Query: 361 Q------GYVMASEVEADFKKLWTNEHLFLKCLIPVLD---TTKELIAT----------- 400
+ G + D KK T + L + KE+++
Sbjct: 245 KYSIWFYGETAGVSTKEDGKKYDTTPSFIMNILKQAWEKDKVQKEVLSRLCYTQMRGGDK 304
Query: 401 --------DIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMK 452
+ F+ L +PP+ RPL+ ++ + Y++I+ + +L +K
Sbjct: 305 LDVILPSYHMFFVECLPIPPSRFRPLNRFGNMISDNPQTSYYKAIIENSQNLH-----LK 359
Query: 453 NKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQM 512
++ L+E + L +Q +++L N D M A +K
Sbjct: 360 RGKKEITLTENM-------LIENMQKGYNQLILNKDSSMPA--------------SIKTT 398
Query: 513 LDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLL 572
L+ K G+ R NMMGKRVN+A R+VI+PDP++ ++ G+P+ FA L+ PV N +
Sbjct: 399 LEHKVGLFRSNMMGKRVNYAARTVISPDPFIPTNTFGIPMPFAMRLSVATPVNERNFEEM 458
Query: 573 RKMVINGPNVYPGANMIQNEDGSVVRISSS----QAVQRESLAKRLIT 616
+K V+NGP +PGA I++E G + +R+ A RL+
Sbjct: 459 KKAVVNGPMTWPGALSIEDEWGKTYLLPDDSDPYSVSKRQGEADRLLA 506
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ R+VI+PDP++ ++ G+P+ FA L+ PV N ++K V+NGP +PGA I+
Sbjct: 417 YAARTVISPDPFIPTNTFGIPMPFAMRLSVATPVNERNFEEMKKAVVNGPMTWPGALSIE 476
Query: 74 NEDGSVVRISSS----QAVQRESLAKRLIT 99
+E G + +R+ A RL+
Sbjct: 477 DEWGKTYLLPDDSDPYSVSKRQGEADRLLA 506
>gi|355712692|gb|AES04434.1| polymerase I polypeptide A, 194kDa [Mustela putorius furo]
Length = 211
Score = 158 bits (399), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 74/149 (49%), Positives = 108/149 (72%), Gaps = 3/149 (2%)
Query: 469 GDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKR 528
G +L +KL N W LQ +V+++ D++++ + G++Q+L+ K G+ R++MMGKR
Sbjct: 14 GQSLTDKLYNIWIRLQSHVNIVFDSEMD---KLMMEKYPGIRQILEKKDGLFRKHMMGKR 70
Query: 529 VNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANM 588
V++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M
Sbjct: 71 VDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASM 130
Query: 589 IQNEDGSVVRISSSQAVQRESLAKRLITP 617
+ NEDGS +S+ QRE++AK+L+TP
Sbjct: 131 VINEDGSRTALSAVDLTQREAVAKQLLTP 159
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 66/87 (75%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 73 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 132
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +S+ QRE++AK+L+TP
Sbjct: 133 NEDGSRTALSAVDLTQREAVAKQLLTP 159
>gi|118425869|gb|ABK90833.1| putative DNA-directed RNA polymerase I, partial [Hortaea werneckii]
Length = 666
Score = 158 bits (399), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 95/265 (35%), Positives = 141/265 (53%), Gaps = 12/265 (4%)
Query: 358 KREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIAT---DIMFIRSLVVPPNN 414
K ++ Y+ S + A L+ E L + + + A D+ F++ ++VPPN
Sbjct: 229 KDQEEYLNPSRIHAQLTALFEREQPILSAVYGHNRQSNKAAAPLTPDMFFLKDILVPPNR 288
Query: 415 LRPLSMEQMPPV-EHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLN 473
RP + + E N LY++IL +C +L ++ + KE D S GD
Sbjct: 289 YRPEARTGSNEIAEAQENTLYKNILTACDTLNTIQRELSGKESRD--SRYRVRTYGD--- 343
Query: 474 NKLQNSWHELQYNVDLLMDAKLN-INKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFA 532
+ +W LQ V+ L+D N + +G+KQ L+ K GM R+ MMGKRVNFA
Sbjct: 344 --FETTWITLQDAVNSLIDRDRNPVQGAAAKRNPEGIKQKLEKKEGMFRKYMMGKRVNFA 401
Query: 533 GRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
R+VI+PDP + + IGVP FA LTYP PVT WNV L++ V NGP V+PGA I++E
Sbjct: 402 ARTVISPDPNIETNEIGVPPVFAVKLTYPEPVTSWNVEELQEAVRNGPFVWPGAVAIESE 461
Query: 593 DGSVVRISSSQAVQRESLAKRLITP 617
G V+ + A +R +LA +L+ P
Sbjct: 462 TGQVINLERKNAEERTALANQLLAP 486
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 57/87 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP + + IGVP FA LTYP PVT WNV L++ V NGP V+PGA I+
Sbjct: 400 FAARTVISPDPNIETNEIGVPPVFAVKLTYPEPVTSWNVEELQEAVRNGPFVWPGAVAIE 459
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
+E G V+ + A +R +LA +L+ P
Sbjct: 460 SETGQVINLERKNAEERTALANQLLAP 486
>gi|375083052|ref|ZP_09730090.1| DNA-directed RNA polymerase subunit A' [Thermococcus litoralis DSM
5473]
gi|374742288|gb|EHR78688.1| DNA-directed RNA polymerase subunit A' [Thermococcus litoralis DSM
5473]
Length = 905
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 133/484 (27%), Positives = 208/484 (42%), Gaps = 118/484 (24%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDP---CTTCGNNYTKCKGHI 188
QE++++S ++ P T++ G+ I GGL D +G I DP C TCG NY +C GH
Sbjct: 19 QEIRKMSAAEITVPDTYSEDGYPIDGGLMDRRLGVI----DPNLRCETCGANYKECPGHF 74
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIEL PVI+ F + + +L+ +C C +I
Sbjct: 75 GHIELARPVIHVGFAKTIYRILESTCRECGRI---------------------------- 106
Query: 249 EETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHV 308
+L D ++ + TK +N+ + E A V ++ +
Sbjct: 107 ------------------RLTDEEIEEYM---TKFS-VNEARKSE--IDALVTEIYKKAR 142
Query: 309 KRK-CIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMAS 367
+R C C P I +++ I + D++ N+ +++ M S
Sbjct: 143 ERMVCPHCGAPQYQIKFERPTIYWEIRRDEEG---------NEYKHRM---------MPS 184
Query: 368 EVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRP-LSMEQMPPV 426
E+ +K+ + +P+L E + M + L VPP +RP +++E
Sbjct: 185 EIRDRLEKIPDKD-------LPLLGLDPEKSRPEWMVLTVLPVPPVTVRPSITLESGIRA 237
Query: 427 EHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYN 486
E I+ LK I A + L+ E L W LQY+
Sbjct: 238 EDDLTHKLVDIIRINARLKQNIEAGAPQ----LIIEDL---------------WDLLQYH 278
Query: 487 VDLLMDAKLNINKTTG--------AHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
V D N+T+G + L Q L GK G R+N+ GKRVNF+ R+VI+
Sbjct: 279 VTTYFD-----NETSGIPPAKHKSGRPLKTLAQRLKGKEGRFRKNLSGKRVNFSARTVIS 333
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVR 598
PDP ++I+ +GVPL A LT P VT +N+ LRKM++NGP YPGAN + + G +R
Sbjct: 334 PDPMISINEVGVPLVVAMELTVPEKVTEFNIEKLRKMILNGPEKYPGANYVIDPQGRRIR 393
Query: 599 ISSS 602
+ S
Sbjct: 394 LMES 397
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 48/72 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP ++I+ +GVPL A LT P VT +N+ LRKM++NGP YPGAN +
Sbjct: 326 FSARTVISPDPMISINEVGVPLVVAMELTVPEKVTEFNIEKLRKMILNGPEKYPGANYVI 385
Query: 74 NEDGSVVRISSS 85
+ G +R+ S
Sbjct: 386 DPQGRRIRLMES 397
>gi|346976952|gb|EGY20404.1| DNA-directed RNA polymerase I subunit RPA1 [Verticillium dahliae
VdLs.17]
Length = 1702
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/263 (36%), Positives = 144/263 (54%), Gaps = 14/263 (5%)
Query: 359 REQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKEL--IATDIMFIRSLVVPPNNLR 416
R Q Y+ A EV ++L+ E L + K+ ++ D+ F+++L+VPPN R
Sbjct: 324 RSQRYITAMEVRERLRELFDKEQEVLSLIYNSKPLKKKAGKVSADMFFLQTLLVPPNRFR 383
Query: 417 PLSMEQMPPV-EHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNK 475
P + + E +N LY+ +L SCG++ V QS + A R T+ +
Sbjct: 384 PEARTGDSEISEAQQNSLYKLVLRSCGTIARV-------HQS--IGGATTERRARTMTD- 433
Query: 476 LQNSWHELQYNVDLLMDAKLN-INKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGR 534
L +W +LQ V+ L+D N + +G+KQ L+ K G+ R+NMMGKRVNFA R
Sbjct: 434 LHQAWTDLQNAVNSLIDKDKNPVMGAAAKRNEEGIKQKLEKKEGLFRKNMMGKRVNFAAR 493
Query: 535 SVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDG 594
SVI+PDP + + IGVP FA+ LT+P PVT N +++ VING + +PGA I+ E+G
Sbjct: 494 SVISPDPNIETNEIGVPPVFARKLTFPEPVTSHNFRDMQRAVINGVDKWPGAAAIEYENG 553
Query: 595 SVVRISSSQAVQRESLAKRLITP 617
+ + A R SLA +L+ P
Sbjct: 554 QITNLRGKSADDRISLANQLLAP 576
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 72/125 (57%), Gaps = 4/125 (3%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDP-CTTCGNN 180
E ++ + T+ E++ +SV ++ + TF++L + +PGGLYD A+G GD C+TC N
Sbjct: 12 ETVEFTFLTETEIRAISVKRIENDSTFDNLLNPVPGGLYDPALGSW---GDSICSTCNLN 68
Query: 181 YTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAG 240
+ C GH GHIELPVPV + +F V LL+ C C + + L+ +++LL G
Sbjct: 69 QSSCPGHAGHIELPVPVYHPVFLDQVLRLLRAQCVYCKGLRLRQRDVHLYSCKLRLLQHG 128
Query: 241 YVTQA 245
+ A
Sbjct: 129 LLQAA 133
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 60/100 (60%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IGVP FA+ LT+P PVT N +++ VING + +PGA I+
Sbjct: 490 FAARSVISPDPNIETNEIGVPPVFARKLTFPEPVTSHNFRDMQRAVINGVDKWPGAAAIE 549
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI 113
E+G + + A R SLA +L+ P D ++ +K+
Sbjct: 550 YENGQITNLRGKSADDRISLANQLLAPTDSNMSSVRNKKV 589
>gi|296822244|ref|XP_002850253.1| RNA polymerase I largest subunit [Arthroderma otae CBS 113480]
gi|238837807|gb|EEQ27469.1| RNA polymerase I largest subunit [Arthroderma otae CBS 113480]
Length = 1680
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 96/261 (36%), Positives = 147/261 (56%), Gaps = 13/261 (4%)
Query: 361 QGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKEL--IATDIMFIRSLVVPPNNLRPL 418
Q YV +SE+ A L+ E L + K+ I+ ++ FI++++VPPN RP
Sbjct: 323 QQYVPSSEIHASLHFLFNKEQEILDLIYDSRPFVKKRSHISANMFFIKNILVPPNKFRP- 381
Query: 419 SMEQMPP--VEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKL 476
+ +Q P +E +N + I+ C + + ++E+ + + IR L
Sbjct: 382 AAQQGPNEIMEAQQNTSFGRIIKLCDQINQI-----SRERQGDTTGTSRRIRD---YRDL 433
Query: 477 QNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSV 536
S +LQ V+ L+D N ++ GA DG+KQ L+ K G+ R+NMMGKRVNFA RSV
Sbjct: 434 LQSIVQLQDAVNSLIDRDRNPSQGLGAQNEDGIKQRLEKKDGLFRKNMMGKRVNFAARSV 493
Query: 537 ITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSV 596
I+PDP + + IG+PL FAK LTYP PVT N L++ VINGP++YPGA ++NE G V
Sbjct: 494 ISPDPNIETNEIGIPLVFAKKLTYPEPVTNHNYWELKQAVINGPDIYPGAAAVENELGQV 553
Query: 597 VRISSSQAVQRESLAKRLITP 617
+ + +R ++A L++P
Sbjct: 554 ISLKYKSVDERVAIANLLLSP 574
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 66/116 (56%), Gaps = 2/116 (1%)
Query: 130 TDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+D+E+K +SV ++++ + +S + +PGGLYD A+G + C+TC N C GH G
Sbjct: 21 SDEEIKAVSVKRIYNTPSLDSFNNPVPGGLYDAALGAWGDH--ICSTCRQNSWSCAGHAG 78
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQA 245
HIELPV V N FF + LL+ C CH+ + + +++LL G + +A
Sbjct: 79 HIELPVHVYNVTFFDQLYRLLRSQCIYCHRFRMARAQINNYACKLRLLQYGLIEEA 134
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 59/89 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IG+PL FAK LTYP PVT N L++ VINGP++YPGA ++
Sbjct: 488 FAARSVISPDPNIETNEIGIPLVFAKKLTYPEPVTNHNYWELKQAVINGPDIYPGAAAVE 547
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPED 102
NE G V+ + +R ++A L++P +
Sbjct: 548 NELGQVISLKYKSVDERVAIANLLLSPSN 576
>gi|14591328|ref|NP_143406.1| DNA-directed RNA polymerase subunit A' [Pyrococcus horikoshii OT3]
gi|3257973|dbj|BAA30656.1| 907aa long hypothetical DNA-directed RNA polymerase subunit A'
[Pyrococcus horikoshii OT3]
Length = 907
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 141/507 (27%), Positives = 212/507 (41%), Gaps = 147/507 (28%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHI 191
QE++++S V+V P T++ G+ I GG+ D MG I + G C TCG +C GH GHI
Sbjct: 19 QEIRKMSAVEVTVPDTYDDDGYPIEGGVMDKRMGVI-DPGLRCETCGAKAGECPGHFGHI 77
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEET 251
EL PVI+ F + + +L+ +C C +IKL D K LE
Sbjct: 78 ELARPVIHVGFAKTIHRILESTCREC--------------GRIKLTDEEIEEYMKKLE-- 121
Query: 252 LFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRK 311
L + S V IL K + R V
Sbjct: 122 -------------LAKNRRSEVNKILKEIHK-----------KARERMV----------- 146
Query: 312 CIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQG-----YVMA 366
C C P I +++ I +RK EQG +M
Sbjct: 147 CPHCGAPQYPIKFEKPTIYWE-----------------------LRKDEQGNEYKHRMMP 183
Query: 367 SEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPV 426
+E+ +K+ + +P+L E + M + L VPP +RP
Sbjct: 184 TEIRDRLEKIPDKD-------LPLLGLHPEKSRPEWMVLTVLPVPPVTVRP--------- 227
Query: 427 EHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNS------- 479
S+ + + + DL + + IR +NN+L+ +
Sbjct: 228 -------------------SITLETGIRAEDDLTHKLVDIIR---INNRLRQNIEAGAPQ 265
Query: 480 ------WHELQYNVDLLMDAKLNINKTTG--------AHQIDGLKQMLDGKTGMIRQNMM 525
W LQY+V ++ N+T+G + L Q L GK G R N+
Sbjct: 266 LIIEDLWDLLQYHVTTYIN-----NETSGVPPAKHKSGRPLKTLAQRLKGKEGRFRGNLS 320
Query: 526 GKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPG 585
GKRVNF+ R+VI+PDP ++I+ +GVP++ A LT P VT +N+ LRKMV+NGP+ YPG
Sbjct: 321 GKRVNFSARTVISPDPMISINEVGVPIQIAMELTVPEKVTEFNIEKLRKMVLNGPDKYPG 380
Query: 586 ANMIQNEDGSVVRISSSQAVQRESLAK 612
AN + + +G +RI S +E+LAK
Sbjct: 381 ANYVIDPEGRRIRIMES---NKENLAK 404
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 57/82 (69%), Gaps = 3/82 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP ++I+ +GVP++ A LT P VT +N+ LRKMV+NGP+ YPGAN +
Sbjct: 326 FSARTVISPDPMISINEVGVPIQIAMELTVPEKVTEFNIEKLRKMVLNGPDKYPGANYVI 385
Query: 74 NEDGSVVRISSSQAVQRESLAK 95
+ +G +RI S +E+LAK
Sbjct: 386 DPEGRRIRIMES---NKENLAK 404
>gi|14520831|ref|NP_126306.1| DNA-directed RNA polymerase subunit A' [Pyrococcus abyssi GE5]
gi|5458047|emb|CAB49537.1| rpoA1 DNA-directed RNA polymerase, subunit A' [Pyrococcus abyssi
GE5]
gi|380741373|tpe|CCE70007.1| TPA: DNA-directed RNA polymerase subunit alpha [Pyrococcus abyssi
GE5]
Length = 907
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 141/507 (27%), Positives = 210/507 (41%), Gaps = 147/507 (28%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHI 191
QE++++S V+V P T++ G+ I GG+ D MG I G C TCG +C GH GHI
Sbjct: 19 QEIRKMSAVEVTVPDTYDDDGYPIEGGVMDKRMGVIDP-GLRCETCGAKAGECPGHFGHI 77
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEET 251
EL PVI+ F + + +L+ +C C +IKL D K LE
Sbjct: 78 ELARPVIHVGFAKTIHRILESTCREC--------------GRIKLTDEEIEEYMKKLE-- 121
Query: 252 LFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRK 311
L + S V IL K + R V
Sbjct: 122 -------------LAKNRRSEVNKILKEIHK-----------KARERMV----------- 146
Query: 312 CIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQG-----YVMA 366
C C P I +++ I +RK EQG +M
Sbjct: 147 CPHCGAPQYPIKFEKPTIYWE-----------------------LRKDEQGNEYKHRMMP 183
Query: 367 SEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPV 426
+E+ +K+ + +P+L E + M + L VPP RP
Sbjct: 184 TEIRDRLEKIPDKD-------LPLLGLHPEKSRPEWMVLTVLPVPPVTARP--------- 227
Query: 427 EHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNS------- 479
S+ + + + DL + + IR +NN+L+ +
Sbjct: 228 -------------------SITLETGIRAEDDLTHKLVDIIR---INNRLKQNIEAGAPQ 265
Query: 480 ------WHELQYNVDLLMDAKLNINKTTG--------AHQIDGLKQMLDGKTGMIRQNMM 525
W LQY+V ++ N+T+G + L Q L GK G R N+
Sbjct: 266 LIIEDLWDLLQYHVTTYIN-----NETSGVPPAKHKSGRPLKTLAQRLKGKEGRFRGNLS 320
Query: 526 GKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPG 585
GKRVNF+ R+VI+PDP ++I+ +GVP++ A LT P VT +N+ LRKMV+NGP+ YPG
Sbjct: 321 GKRVNFSARTVISPDPMISINEVGVPIQIAMELTVPEKVTEFNIEKLRKMVLNGPDKYPG 380
Query: 586 ANMIQNEDGSVVRISSSQAVQRESLAK 612
AN + + +G +RI S RE+LA+
Sbjct: 381 ANYVIDPEGRRIRIMES---NRENLAR 404
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 57/82 (69%), Gaps = 3/82 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP ++I+ +GVP++ A LT P VT +N+ LRKMV+NGP+ YPGAN +
Sbjct: 326 FSARTVISPDPMISINEVGVPIQIAMELTVPEKVTEFNIEKLRKMVLNGPDKYPGANYVI 385
Query: 74 NEDGSVVRISSSQAVQRESLAK 95
+ +G +RI S RE+LA+
Sbjct: 386 DPEGRRIRIMES---NRENLAR 404
>gi|242398380|ref|YP_002993804.1| DNA-directed RNA polymerase subunit alpha [Thermococcus sibiricus
MM 739]
gi|242264773|gb|ACS89455.1| DNA-directed RNA polymerase subunit alpha [Thermococcus sibiricus
MM 739]
Length = 905
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 131/484 (27%), Positives = 208/484 (42%), Gaps = 118/484 (24%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDP---CTTCGNNYTKCKGHI 188
QE++++S ++ P T++ G+ I GGL D +G I DP C TCG NY +C GH
Sbjct: 19 QEIRKMSAAEITVPDTYSEDGYPIDGGLMDRRLGVI----DPNLRCETCGANYKECPGHF 74
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIEL PVI+ F + + L+ +C C +I
Sbjct: 75 GHIELARPVIHVGFAKTIYRTLESTCRECGRI---------------------------- 106
Query: 249 EETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHV 308
+L D ++ +IN+ + E A ++++ +
Sbjct: 107 ------------------KLTDEEIEDYFGK----LNINEARKSE--IDALISEIHKKAK 142
Query: 309 KRK-CIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMAS 367
+R C C P +I +++ I + D++ N+ +++ M S
Sbjct: 143 ERMVCPHCGAPQFSIKFERPTIYWELRTDEEG---------NEYRHRM---------MPS 184
Query: 368 EVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRP-LSMEQMPPV 426
E+ +K+ + +P+L E + M + L VPP ++RP +++E
Sbjct: 185 EIRDRLEKIPDKD-------LPLLGLNPENSRPEWMVLTVLPVPPVSVRPSITLESGIRA 237
Query: 427 EHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYN 486
E I+ LK I A + L+ E L W LQY+
Sbjct: 238 EDDLTHKLVDIIRINARLKQNIEAGAPQ----LIIEDL---------------WDLLQYH 278
Query: 487 VDLLMDAKLNINKTTG--------AHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
V D N+T+G + L Q L GK G R+N+ GKRVNF+ R+VI+
Sbjct: 279 VTTYFD-----NETSGIPPAKHKSGRPLKTLAQRLKGKEGRFRKNLSGKRVNFSARTVIS 333
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVR 598
PDP ++I+ +GVPL A LT P VT +N+ LRKM++NGP YPGAN + + G +R
Sbjct: 334 PDPMISINEVGVPLIVAMELTVPEKVTDFNLEKLRKMILNGPEKYPGANYVIDPQGRRIR 393
Query: 599 ISSS 602
+ S
Sbjct: 394 LMES 397
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 48/72 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP ++I+ +GVPL A LT P VT +N+ LRKM++NGP YPGAN +
Sbjct: 326 FSARTVISPDPMISINEVGVPLIVAMELTVPEKVTDFNLEKLRKMILNGPEKYPGANYVI 385
Query: 74 NEDGSVVRISSS 85
+ G +R+ S
Sbjct: 386 DPQGRRIRLMES 397
>gi|406695191|gb|EKC98503.1| hypothetical protein A1Q2_07185 [Trichosporon asahii var. asahii
CBS 8904]
Length = 1052
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/275 (34%), Positives = 153/275 (55%), Gaps = 11/275 (4%)
Query: 357 RKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIA-------TDIMFIRSLV 409
R R + + A+EV + ++L+ E L + D+ F+ +
Sbjct: 330 RGRNERVMAAAEVRSHLRRLFQKEAEACSLLYGRHGGPQAKSGHIPPPPIADMFFMDVVP 389
Query: 410 VPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKN---KEQSDLLSEALKG 466
VPP RP + E+S+N L +I+ +C + +V +++ +++S+ + EALK
Sbjct: 390 VPPTRFRPPAKMGDDLFENSQNTLLTAIINTCERIYTVNQTLRDFERQDKSEAVMEALKN 449
Query: 467 IRGDTLNNKLQNSWHELQYNVDLLMDAKLN-INKTTGAHQIDGLKQMLDGKTGMIRQNMM 525
+ L S LQ++V+ MD+ N G G+KQ+L+ K G+ R++MM
Sbjct: 450 LDKTRSFEILLESLIRLQHDVNSFMDSTKNPAVMKQGKLPPQGVKQLLEKKEGLFRKHMM 509
Query: 526 GKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPG 585
GKRVN+A RSVI+PD + + IG+P FAK LTYP PVTP NV +R++VINGP V+PG
Sbjct: 510 GKRVNYAARSVISPDINIETNEIGIPPVFAKKLTYPEPVTPQNVHEMRQLVINGPKVHPG 569
Query: 586 ANMIQNEDGSVVRISSSQAVQRESLAKRLITPEGN 620
A ++QNEDGS + + + QR ++A +L+TP+ +
Sbjct: 570 AALVQNEDGSQISLDRTTLEQRTAIANQLLTPQND 604
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 126/253 (49%), Gaps = 29/253 (11%)
Query: 134 VKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIEL 193
++ +SV K+ +P+ ++L GGLYD +GP++ R D C TCG +Y C GH GHIEL
Sbjct: 24 IRSISVKKIDNPVLLDNLNLATNGGLYDPKLGPMTAR-DMCETCGQSYFACPGHYGHIEL 82
Query: 194 PVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQA-------- 245
P PV + LF LL+ +C CH +P +I +++LLDAG + +A
Sbjct: 83 PSPVFHPLFMNQCYNLLRATCLYCHHFKMPELILRRYIARLRLLDAGCLEEAHTVANFHP 142
Query: 246 --KDLEETLFNEENLRLH-----PAQLVQLVDSHVQSILAHGTKICDINDYKGG---EEL 295
KD + +E++ A+ +Q +D +V+ +L H + + ++YK G EE
Sbjct: 143 VTKDAPKDGDTQEDMDAGVAGETAAEFIQRMDEYVRQVLKHRKRKHERDNYKDGLVFEER 202
Query: 296 RSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKID---KDNLDQS---LDKSLN 349
+ V + + KC C N ++++ K IK + D K L S L K
Sbjct: 203 KR--VLNEFGKKLWAKCSHCQAYGN--TFRKEKTIKIIEYDLSPKQKLANSTMGLKKPHA 258
Query: 350 KSSNQIIRKREQG 362
S++ I+K ++G
Sbjct: 259 SFSSRSIKKPQKG 271
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 64/89 (71%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PD + + IG+P FAK LTYP PVTP NV +R++VINGP V+PGA ++Q
Sbjct: 515 YAARSVISPDINIETNEIGIPPVFAKKLTYPEPVTPQNVHEMRQLVINGPKVHPGAALVQ 574
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPED 102
NEDGS + + + QR ++A +L+TP++
Sbjct: 575 NEDGSQISLDRTTLEQRTAIANQLLTPQN 603
>gi|315056319|ref|XP_003177534.1| DNA-directed RNA polymerase I subunit RPA1 [Arthroderma gypseum CBS
118893]
gi|311339380|gb|EFQ98582.1| DNA-directed RNA polymerase I subunit RPA1 [Arthroderma gypseum CBS
118893]
Length = 1679
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 98/268 (36%), Positives = 148/268 (55%), Gaps = 13/268 (4%)
Query: 354 QIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKEL--IATDIMFIRSLVVP 411
Q+ Q YV +SE+ A L+ E L + K+ I+ ++ FI++++VP
Sbjct: 316 QVGDSDSQQYVPSSEIHASLHFLFNKEQEILDLIYDSRPFVKKRSHISPNMFFIKNILVP 375
Query: 412 PNNLRPLSMEQMPP--VEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRG 469
PN RP + +Q P +E +N + I+ C + + + + + S S ++ R
Sbjct: 376 PNKFRP-AAQQGPNEIMEAQQNTSFGRIIKLCDQINQI--SRERQGDSTGTSRRIRDYR- 431
Query: 470 DTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRV 529
L + LQ V+ L+D N ++ GA DG+KQ L+ K G+ R+NMMGKRV
Sbjct: 432 -----DLLQAIVNLQDAVNSLIDRDRNPSQGAGAQNEDGIKQRLEKKDGLFRKNMMGKRV 486
Query: 530 NFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 589
NFA RSVI+PDP + + IG+PL FAK LTYP PVT N L++ VINGP+VYPGA +
Sbjct: 487 NFAARSVISPDPNIETNEIGIPLVFAKKLTYPEPVTNHNYWELKQAVINGPDVYPGAAAV 546
Query: 590 QNEDGSVVRISSSQAVQRESLAKRLITP 617
+NE G VV + +R ++A L++P
Sbjct: 547 ENELGQVVSLKFKTVDERIAIANLLLSP 574
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 66/116 (56%), Gaps = 2/116 (1%)
Query: 130 TDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+D+E+K +SV ++++ + +S + +PGGLYD A+G + C+TC N C GH G
Sbjct: 21 SDEEIKAVSVKRIYNTPSLDSFNNPVPGGLYDAALGAWGDH--ICSTCRQNSWSCAGHSG 78
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQA 245
HIELPV V N FF + LL+ C CH+ + + +++LL G + +A
Sbjct: 79 HIELPVHVYNVTFFDQLYRLLRSQCIYCHRFRMSRAQVNNYSCKLRLLQYGLIEEA 134
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 59/89 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IG+PL FAK LTYP PVT N L++ VINGP+VYPGA ++
Sbjct: 488 FAARSVISPDPNIETNEIGIPLVFAKKLTYPEPVTNHNYWELKQAVINGPDVYPGAAAVE 547
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPED 102
NE G VV + +R ++A L++P +
Sbjct: 548 NELGQVVSLKFKTVDERIAIANLLLSPSN 576
>gi|332157774|ref|YP_004423053.1| DNA-directed RNA polymerase subunit A' [Pyrococcus sp. NA2]
gi|331033237|gb|AEC51049.1| DNA-directed RNA polymerase subunit A' [Pyrococcus sp. NA2]
Length = 906
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 140/507 (27%), Positives = 210/507 (41%), Gaps = 147/507 (28%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHI 191
QE++++S V+V P T++ G+ I GG+ D MG I G C TCG +C GH GHI
Sbjct: 19 QEIRKMSAVEVTVPDTYDDDGYPIEGGVMDKRMGVIDP-GLRCETCGAKAGECPGHFGHI 77
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEET 251
EL PVI+ F + + +L+ +C C +IKL D K LE
Sbjct: 78 ELARPVIHVGFAKTIHRILESTCREC--------------GRIKLTDEEIEEYMKKLE-- 121
Query: 252 LFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRK 311
L + S V IL K + R V
Sbjct: 122 -------------LAKNRRSEVNKILKEIHK-----------KARERMV----------- 146
Query: 312 CIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQG-----YVMA 366
C C P I +++ I +RK EQG +M
Sbjct: 147 CPHCGAPQYPIKFEKPTIYWE-----------------------LRKDEQGNEYKHRMMP 183
Query: 367 SEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPV 426
+E+ +K+ + +P+L E + M + L VPP RP
Sbjct: 184 TEIRDRLEKIPDKD-------LPLLGLHPEKSRPEWMVLTVLPVPPVTARP--------- 227
Query: 427 EHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNS------- 479
S+ + + + DL + + IR +NN+L+ +
Sbjct: 228 -------------------SITLETGIRAEDDLTHKLVDIIR---INNRLKQNIEAGAPQ 265
Query: 480 ------WHELQYNVDLLMDAKLNINKTTG--------AHQIDGLKQMLDGKTGMIRQNMM 525
W LQY+V ++ N+T+G + L Q L GK G R N+
Sbjct: 266 LIIEDLWDLLQYHVTTYIN-----NETSGVPPAKHKSGRPLKTLAQRLKGKEGRFRGNLS 320
Query: 526 GKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPG 585
GKRVNF+ R+VI+PDP ++I+ +GVP+E A LT P VT +N+ LRKM++NGP+ YPG
Sbjct: 321 GKRVNFSARTVISPDPMISINEVGVPIEIAMELTVPEKVTEFNIEKLRKMILNGPDKYPG 380
Query: 586 ANMIQNEDGSVVRISSSQAVQRESLAK 612
AN + + +G +RI S +E+LA+
Sbjct: 381 ANYVIDPEGRRIRIMES---NKENLAR 404
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 57/82 (69%), Gaps = 3/82 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP ++I+ +GVP+E A LT P VT +N+ LRKM++NGP+ YPGAN +
Sbjct: 326 FSARTVISPDPMISINEVGVPIEIAMELTVPEKVTEFNIEKLRKMILNGPDKYPGANYVI 385
Query: 74 NEDGSVVRISSSQAVQRESLAK 95
+ +G +RI S +E+LA+
Sbjct: 386 DPEGRRIRIMES---NKENLAR 404
>gi|327294315|ref|XP_003231853.1| DNA-directed RNA polymerase I [Trichophyton rubrum CBS 118892]
gi|326465798|gb|EGD91251.1| DNA-directed RNA polymerase I [Trichophyton rubrum CBS 118892]
Length = 1681
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 98/263 (37%), Positives = 148/263 (56%), Gaps = 17/263 (6%)
Query: 361 QGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKEL--IATDIMFIRSLVVPPNNLRPL 418
Q YV +SE+ A L+ E L + K+ I+ ++ FI++++VPPN RP
Sbjct: 324 QQYVPSSEIHASLHFLFNKEQEILDLIYDSRPFVKKRSHISANMFFIKNILVPPNKFRP- 382
Query: 419 SMEQMPP--VEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRG--DTLNN 474
+ +Q P +E +N + I+ C + + ++E+ + + IR D L
Sbjct: 383 AAQQGPNEIMEAQQNTSFGRIIKLCDQINQI-----SRERQGDTAGTSRRIRDYRDLLQA 437
Query: 475 KLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGR 534
+Q LQ V+ L+D N ++ GA DG+KQ L+ K G+ R+NMMGKRVNFA R
Sbjct: 438 IVQ-----LQDAVNSLIDRDRNPSQGLGAQNEDGIKQRLEKKDGLFRKNMMGKRVNFAAR 492
Query: 535 SVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDG 594
SVI+PDP + + IG+PL FAK LTYP PVT N L++ VINGP++YPGA ++NE G
Sbjct: 493 SVISPDPNIETNEIGIPLVFAKKLTYPEPVTNHNYWELKQAVINGPDIYPGAAAVENELG 552
Query: 595 SVVRISSSQAVQRESLAKRLITP 617
VV + +R ++A L++P
Sbjct: 553 QVVSLKFKTVDERVAIANLLLSP 575
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 66/116 (56%), Gaps = 2/116 (1%)
Query: 130 TDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+D+E+K +SV ++++ + +S + IPGGLYD A+G + C+TC N C GH G
Sbjct: 21 SDEEIKAVSVKRIYNTPSLDSFNNPIPGGLYDAALGAWGDH--ICSTCRQNSWSCAGHSG 78
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQA 245
HIELPV V N FF + LL+ C CH+ + + +++LL G + +A
Sbjct: 79 HIELPVHVYNVTFFDQLYRLLRSQCIYCHRFRMSRVQVNNYSCKLRLLQYGLIEEA 134
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 59/89 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IG+PL FAK LTYP PVT N L++ VINGP++YPGA ++
Sbjct: 489 FAARSVISPDPNIETNEIGIPLVFAKKLTYPEPVTNHNYWELKQAVINGPDIYPGAAAVE 548
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPED 102
NE G VV + +R ++A L++P +
Sbjct: 549 NELGQVVSLKFKTVDERVAIANLLLSPSN 577
>gi|401887040|gb|EJT51046.1| hypothetical protein A1Q1_07736 [Trichosporon asahii var. asahii
CBS 2479]
Length = 1052
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/275 (34%), Positives = 153/275 (55%), Gaps = 11/275 (4%)
Query: 357 RKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIA-------TDIMFIRSLV 409
R R + + A+EV + ++L+ E L + D+ F+ +
Sbjct: 330 RGRNERVMAAAEVRSHLRRLFQKEAEACSLLYGRHGGPQAKSGHIPPPPIADMFFMDVVP 389
Query: 410 VPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKN---KEQSDLLSEALKG 466
VPP RP + E+S+N L +I+ +C + +V +++ +++S+ + EALK
Sbjct: 390 VPPTRFRPPAKMGDDLFENSQNTLLTAIINTCERIYTVNQTLRDFERQDKSEAVMEALKN 449
Query: 467 IRGDTLNNKLQNSWHELQYNVDLLMDAKLN-INKTTGAHQIDGLKQMLDGKTGMIRQNMM 525
+ L S LQ++V+ MD+ N G G+KQ+L+ K G+ R++MM
Sbjct: 450 LDKTRSFEILLESLIRLQHDVNSFMDSTKNPAVMKQGKLPPQGVKQLLEKKEGLFRKHMM 509
Query: 526 GKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPG 585
GKRVN+A RSVI+PD + + IG+P FAK LTYP PVTP NV +R++VINGP V+PG
Sbjct: 510 GKRVNYAARSVISPDINIETNEIGIPPVFAKKLTYPEPVTPQNVHEMRQLVINGPKVHPG 569
Query: 586 ANMIQNEDGSVVRISSSQAVQRESLAKRLITPEGN 620
A ++QNEDGS + + + QR ++A +L+TP+ +
Sbjct: 570 AALVQNEDGSQISLDRTTLEQRTAIANQLLTPQND 604
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 112/221 (50%), Gaps = 23/221 (10%)
Query: 134 VKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIEL 193
++ +SV K+ +P+ ++L GGLYD +GP++ R D C TCG +Y C GH GHIEL
Sbjct: 24 IRSISVKKIDNPVLLDNLNLATNGGLYDPKLGPMTAR-DMCETCGQSYFACPGHYGHIEL 82
Query: 194 PVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQA-------- 245
P PV + LF LL+ +C CH +P +I +++LLDAG + +A
Sbjct: 83 PSPVFHPLFMNQCYNLLRATCLYCHHFKMPELILRRYIARLRLLDAGCLEEAHTVANFHP 142
Query: 246 --KDLEETLFNEENLRLH-----PAQLVQLVDSHVQSILAHGTKICDINDYKGG---EEL 295
KD + +E++ A+ +Q +D +V+ +L H + + ++YK G EE
Sbjct: 143 VTKDAPKDGDTQEDMDAGVAGETAAEFIQRMDEYVRQVLKHRKRKHERDNYKDGLVFEER 202
Query: 296 RSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKID 336
+ V + + KC C N ++++ K IK + D
Sbjct: 203 KR--VLNEFGKKLWAKCSHCQAYGN--TFRKEKTIKIIEYD 239
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 64/89 (71%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PD + + IG+P FAK LTYP PVTP NV +R++VINGP V+PGA ++Q
Sbjct: 515 YAARSVISPDINIETNEIGIPPVFAKKLTYPEPVTPQNVHEMRQLVINGPKVHPGAALVQ 574
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPED 102
NEDGS + + + QR ++A +L+TP++
Sbjct: 575 NEDGSQISLDRTTLEQRTAIANQLLTPQN 603
>gi|295671524|ref|XP_002796309.1| DNA-directed RNA polymerase I subunit RPA1 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226284442|gb|EEH40008.1| DNA-directed RNA polymerase I subunit RPA1 [Paracoccidioides sp.
'lutzii' Pb01]
Length = 1691
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 103/275 (37%), Positives = 152/275 (55%), Gaps = 16/275 (5%)
Query: 347 SLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKEL--IATDIMF 404
S NK S+Q Q ++ + EV A + L+ E L + +K ++ D+ F
Sbjct: 314 SRNKPSDQ----GAQQFMPSPEVYASLRLLFEREQEVLNLVYDSRPRSKHRPRVSPDLFF 369
Query: 405 IRSLVVPPNNLRPLSMEQMPPV-EHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEA 463
I++++VPPN RP++ + E +N + IL C + + + + + S S
Sbjct: 370 IKTILVPPNKYRPIAASGSSDIIEAQQNTSFTRILKLCDQINQI--SRERQGDSTESSTR 427
Query: 464 LKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQ-IDGLKQMLDGKTGMIRQ 522
L+ R D L +Q LQ V+ L+D N N+ A Q DG+KQ L+ K G+ R+
Sbjct: 428 LRDYR-DLLQTIVQ-----LQDAVNSLIDRDKNPNQGAAAMQNEDGIKQRLEKKDGLFRK 481
Query: 523 NMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNV 582
NMMGKRVNFA RSVI+PDP + + IGVPL FAK LTYP PVT N L++ VINGP++
Sbjct: 482 NMMGKRVNFAARSVISPDPNIETNEIGVPLVFAKKLTYPEPVTNHNYRELKQAVINGPDI 541
Query: 583 YPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
YPGA ++NE G VV + +R ++A L++P
Sbjct: 542 YPGAAAVENEIGQVVSLKFKGVDERIAIANMLLSP 576
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 68/120 (56%), Gaps = 2/120 (1%)
Query: 130 TDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+D+E+K +S+ ++++ +SL + +PGGLYD A+G + CTTC N C GH G
Sbjct: 21 SDEEIKTISIKRIYNTPALDSLNNPVPGGLYDPALGAWGDH--VCTTCRLNSWSCNGHSG 78
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLE 249
HIELPV V N FF + LL+ C CH+ + + +++LL G + +A ++
Sbjct: 79 HIELPVHVYNVTFFDQLFRLLRAQCVYCHRFRMSRVDIKSYACKMRLLQYGLIEEAAAID 138
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 59/89 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IGVPL FAK LTYP PVT N L++ VINGP++YPGA ++
Sbjct: 490 FAARSVISPDPNIETNEIGVPLVFAKKLTYPEPVTNHNYRELKQAVINGPDIYPGAAAVE 549
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPED 102
NE G VV + +R ++A L++P +
Sbjct: 550 NEIGQVVSLKFKGVDERIAIANMLLSPSN 578
>gi|302666622|ref|XP_003024908.1| hypothetical protein TRV_00913 [Trichophyton verrucosum HKI 0517]
gi|291188985|gb|EFE44297.1| hypothetical protein TRV_00913 [Trichophyton verrucosum HKI 0517]
Length = 1642
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 98/263 (37%), Positives = 148/263 (56%), Gaps = 17/263 (6%)
Query: 361 QGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKEL--IATDIMFIRSLVVPPNNLRPL 418
Q YV +SE+ A L+ E L + K+ I+ ++ FI++++VPPN RP
Sbjct: 285 QQYVPSSEIYASLHFLFNKEQEILDLIYDSRPFVKKRSHISANMFFIKNILVPPNKFRP- 343
Query: 419 SMEQMPP--VEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRG--DTLNN 474
+ +Q P +E +N + I+ C + + ++E+ + + IR D L
Sbjct: 344 AAQQGPNEIMEAQQNTSFGRIIKLCDQINQI-----SRERQGDTTGTSRRIRDYRDLLQA 398
Query: 475 KLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGR 534
+Q LQ V+ L+D N ++ GA DG+KQ L+ K G+ R+NMMGKRVNFA R
Sbjct: 399 IVQ-----LQDAVNSLIDRDRNPSQGLGAQNEDGIKQRLEKKDGLFRKNMMGKRVNFAAR 453
Query: 535 SVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDG 594
SVI+PDP + + IG+PL FAK LTYP PVT N L++ VINGP++YPGA ++NE G
Sbjct: 454 SVISPDPNIETNEIGIPLVFAKKLTYPEPVTNHNYWELKQAVINGPDIYPGAAAVENELG 513
Query: 595 SVVRISSSQAVQRESLAKRLITP 617
VV + +R ++A L++P
Sbjct: 514 QVVSLKFKTVDERVAIANLLLSP 536
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 59/89 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IG+PL FAK LTYP PVT N L++ VINGP++YPGA ++
Sbjct: 450 FAARSVISPDPNIETNEIGIPLVFAKKLTYPEPVTNHNYWELKQAVINGPDIYPGAAAVE 509
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPED 102
NE G VV + +R ++A L++P +
Sbjct: 510 NELGQVVSLKFKTVDERVAIANLLLSPSN 538
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 30/48 (62%)
Query: 130 TDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTC 177
+D+E+K +SV ++++ + +S + IPGGLYD A+G + C C
Sbjct: 21 SDEEIKAVSVKRIYNTPSLDSFNNPIPGGLYDAALGAWGDHISQCIYC 68
>gi|302503366|ref|XP_003013643.1| hypothetical protein ARB_00090 [Arthroderma benhamiae CBS 112371]
gi|291177208|gb|EFE33003.1| hypothetical protein ARB_00090 [Arthroderma benhamiae CBS 112371]
Length = 1642
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 97/261 (37%), Positives = 148/261 (56%), Gaps = 13/261 (4%)
Query: 361 QGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKEL--IATDIMFIRSLVVPPNNLRPL 418
Q YV +SE+ A L+ E L + K+ I+ ++ FI++++VPPN RP
Sbjct: 285 QQYVPSSEIYASLHFLFNKEQEILDLIYDSRPFVKKRSHISANMFFIKNILVPPNKFRP- 343
Query: 419 SMEQMPP--VEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKL 476
+ +Q P +E +N + I+ C + + + + + + S ++ R D L +
Sbjct: 344 AAQQGPNEIMEAQQNTSFGRIIKLCDQINQI--SRERQGDTTGTSRRIRDYR-DLLQAIV 400
Query: 477 QNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSV 536
Q LQ V+ L+D N ++ GA DG+KQ L+ K G+ R+NMMGKRVNFA RSV
Sbjct: 401 Q-----LQDAVNSLIDRDRNPSQGLGAQNEDGIKQRLEKKDGLFRKNMMGKRVNFAARSV 455
Query: 537 ITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSV 596
I+PDP + + IG+PL FAK LTYP PVT N L++ VINGP++YPGA ++NE G V
Sbjct: 456 ISPDPNIETNEIGIPLVFAKKLTYPEPVTNHNYWELKQAVINGPDIYPGAAAVENELGQV 515
Query: 597 VRISSSQAVQRESLAKRLITP 617
V + +R ++A L++P
Sbjct: 516 VSLKFKTVDERVAIANLLLSP 536
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 59/89 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IG+PL FAK LTYP PVT N L++ VINGP++YPGA ++
Sbjct: 450 FAARSVISPDPNIETNEIGIPLVFAKKLTYPEPVTNHNYWELKQAVINGPDIYPGAAAVE 509
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPED 102
NE G VV + +R ++A L++P +
Sbjct: 510 NELGQVVSLKFKTVDERVAIANLLLSPSN 538
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 30/48 (62%)
Query: 130 TDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTC 177
+D+E+K +SV ++++ + +S + IPGGLYD A+G + C C
Sbjct: 21 SDEEIKAVSVKRIYNTPSLDSFNNPIPGGLYDAALGAWGDHISQCIYC 68
>gi|341038609|gb|EGS23601.1| DNA-directed RNA polymerase-like protein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 1713
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 98/289 (33%), Positives = 150/289 (51%), Gaps = 12/289 (4%)
Query: 338 DNLDQSLDKSLNKSSNQIIR--KREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTK 395
+N D + + K+ + ++ K Q Y+ EV L+ E L L K
Sbjct: 312 ENGDVVMTDAATKTKQKTVKAPKPNQRYLSTMEVRERLNLLFEREQELLSLLYSAKPRPK 371
Query: 396 EL--IATDIMFIRSLVVPPNNLRPLS-MEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMK 452
+ D+ FI +L+VPPN RP + M E +N LY+ I+ + + + +
Sbjct: 372 NSPPLTADMFFITTLLVPPNRYRPEARMGDNQISEAQQNNLYKMIIRAASRVAQISREIA 431
Query: 453 NKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLN-INKTTGAHQIDGLKQ 511
+ + A++ + + L +W ELQ V+ L+D N I +G+KQ
Sbjct: 432 GNKDAANEGRAIRDM------SHLYQAWTELQDAVNSLIDRDKNPIQGAAAKRNEEGIKQ 485
Query: 512 MLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTL 571
L+ K G+ R+NMMGKRVNFA RSVI+PDP + + IGVP FA+ LTYP PVT N
Sbjct: 486 KLEKKEGLFRKNMMGKRVNFAARSVISPDPNIETNEIGVPPVFARKLTYPEPVTSHNFKD 545
Query: 572 LRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPEGN 620
L++ VING + +PGA+ I+NE+G ++ + S R +LA +L+ P GN
Sbjct: 546 LQQAVINGCDKWPGASAIENENGQIINLRSKSLEDRIALANQLLAPTGN 594
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 132/281 (46%), Gaps = 47/281 (16%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDP-CTTCGNN 180
E ++ + + E++ +SV ++ + TF+SL + +PGGLYD A+G GD C TC N
Sbjct: 12 ESVEFTFLSPDEIRAISVKRIENDSTFDSLLNPVPGGLYDPALGSW---GDALCRTCNLN 68
Query: 181 YTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAG 240
+C GH GHIELPVPV + +F LL+ C CH+ +P +I +LL G
Sbjct: 69 QAQCPGHPGHIELPVPVYHPVFMDQAYRLLRAQCVYCHRFRLPRHEIHRYICMFRLLQVG 128
Query: 241 YVTQAK-----------------------DLEETLFNEENLRLHPAQLVQLVDSHVQSIL 277
V +A+ D+E+ EE +H + + + +++V+ +L
Sbjct: 129 LVHEAQMIDSFSVSDLGEQVRKLQLNDVPDIEDDEAQEEGNNIHDSTM-RTREAYVRQVL 187
Query: 278 AHGTKICDIND-----YKGGEELRSAFVAQVLSRHVKRK-CIFCATPINAIS--YQQRKI 329
+ K I D ++G E+R V + L++ VK K C C + IS Y++ +
Sbjct: 188 QNYRKRVSIGDIRKGKHEGAAEMRRTLVKEFLAQMVKEKRCRSC----DGISPVYRKDRW 243
Query: 330 IKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVE 370
+K ++ D L + + Q RKR +A + +
Sbjct: 244 VKIYERD-------LTEKEKAAMAQAGRKRTDALALARKAK 277
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 61/100 (61%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IGVP FA+ LTYP PVT N L++ VING + +PGA+ I+
Sbjct: 505 FAARSVISPDPNIETNEIGVPPVFARKLTYPEPVTSHNFKDLQQAVINGCDKWPGASAIE 564
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI 113
NE+G ++ + S R +LA +L+ P + +K+
Sbjct: 565 NENGQIINLRSKSLEDRIALANQLLAPTGNNFSGVRNKKV 604
>gi|320038801|gb|EFW20736.1| DNA-directed RNA polymerase 1 subunit RPA1 [Coccidioides posadasii
str. Silveira]
Length = 1690
Score = 155 bits (393), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 99/264 (37%), Positives = 147/264 (55%), Gaps = 18/264 (6%)
Query: 361 QGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTT--KELIATDIMFIRSLVVPPNNLRPL 418
Q Y+ +SEV A + L+ E L + + + + D+ FI++L+VPPN RP
Sbjct: 331 QQYIPSSEVYASVRFLFEKEQEILDLVYDSRPGSGRRSHVNADMFFIKNLLVPPNKYRP- 389
Query: 419 SMEQMPP--VEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRG--DTLNN 474
+ +Q P +E +N + IL C + + ++E+ E++ IR D L+
Sbjct: 390 AAQQGPGQIMEAQQNTSFTRILKLCDQINQI-----SRERQGDNGESISRIRSYRDLLHA 444
Query: 475 KLQNSWHELQYNVDLLMDAKLN-INKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
+Q LQ V+ L+D N G DG+KQ L+ K G+ R+NMMGKRVNFA
Sbjct: 445 IVQ-----LQDAVNSLIDRDRNPAQGAAGIQNEDGIKQRLEKKDGLFRKNMMGKRVNFAA 499
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
RSVI+PDP + + IG+PL FAK LTYP PVT N L++ VINGP++YPGA ++NE
Sbjct: 500 RSVISPDPNIETNEIGIPLVFAKKLTYPEPVTNHNYWELKQAVINGPDIYPGAAAVENEL 559
Query: 594 GSVVRISSSQAVQRESLAKRLITP 617
G VV + +R ++A L++P
Sbjct: 560 GQVVNLKFKSVDERIAIANMLLSP 583
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 65/116 (56%), Gaps = 2/116 (1%)
Query: 130 TDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+D E+K +SV ++ + T +S + +PGGLYD A+G + CTTC N C GH G
Sbjct: 21 SDNEIKSVSVKRIHNTPTLDSFNNPVPGGLYDPALGAWGDH--ICTTCRLNAWSCAGHSG 78
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQA 245
HIELPV V N FF + LLK C CH+ + ++ +++LL G V +A
Sbjct: 79 HIELPVHVYNVTFFDQLFRLLKAQCIYCHRFRMSKIQINTYVCKLRLLQYGLVEEA 134
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 64/100 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IG+PL FAK LTYP PVT N L++ VINGP++YPGA ++
Sbjct: 497 FAARSVISPDPNIETNEIGIPLVFAKKLTYPEPVTNHNYWELKQAVINGPDIYPGAAAVE 556
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI 113
NE G VV + +R ++A L++P + + + +K+
Sbjct: 557 NELGQVVNLKFKSVDERIAIANMLLSPSNWKLKRSRNKKV 596
>gi|303317604|ref|XP_003068804.1| DNA-directed RNA polymerase II largest subunit, putative
[Coccidioides posadasii C735 delta SOWgp]
gi|240108485|gb|EER26659.1| DNA-directed RNA polymerase II largest subunit, putative
[Coccidioides posadasii C735 delta SOWgp]
Length = 1690
Score = 155 bits (393), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 99/264 (37%), Positives = 147/264 (55%), Gaps = 18/264 (6%)
Query: 361 QGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTT--KELIATDIMFIRSLVVPPNNLRPL 418
Q Y+ +SEV A + L+ E L + + + + D+ FI++L+VPPN RP
Sbjct: 331 QQYIPSSEVYASVRFLFEKEQEILDLVYDSRPGSGRRSHVNADMFFIKNLLVPPNKYRP- 389
Query: 419 SMEQMPP--VEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRG--DTLNN 474
+ +Q P +E +N + IL C + + ++E+ E++ IR D L+
Sbjct: 390 AAQQGPGQIMEAQQNTSFTRILKLCDQINQI-----SRERQGDNGESISRIRSYRDLLHA 444
Query: 475 KLQNSWHELQYNVDLLMDAKLN-INKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
+Q LQ V+ L+D N G DG+KQ L+ K G+ R+NMMGKRVNFA
Sbjct: 445 IVQ-----LQDAVNSLIDRDRNPAQGAAGIQNEDGIKQRLEKKDGLFRKNMMGKRVNFAA 499
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
RSVI+PDP + + IG+PL FAK LTYP PVT N L++ VINGP++YPGA ++NE
Sbjct: 500 RSVISPDPNIETNEIGIPLVFAKKLTYPEPVTNHNYWELKQAVINGPDIYPGAAAVENEL 559
Query: 594 GSVVRISSSQAVQRESLAKRLITP 617
G VV + +R ++A L++P
Sbjct: 560 GQVVNLKFKSVDERIAIANMLLSP 583
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 65/116 (56%), Gaps = 2/116 (1%)
Query: 130 TDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+D E+K +SV ++ + T +S + +PGGLYD A+G + CTTC N C GH G
Sbjct: 21 SDNEIKSVSVKRIHNTPTLDSFNNPVPGGLYDPALGAWGDH--ICTTCRLNAWSCAGHSG 78
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQA 245
HIELPV V N FF + LLK C CH+ + ++ +++LL G V +A
Sbjct: 79 HIELPVHVYNVTFFDQLFRLLKAQCIYCHRFRMSKIQINTYVCKLRLLQYGLVEEA 134
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 64/100 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IG+PL FAK LTYP PVT N L++ VINGP++YPGA ++
Sbjct: 497 FAARSVISPDPNIETNEIGIPLVFAKKLTYPEPVTNHNYWELKQAVINGPDIYPGAAAVE 556
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI 113
NE G VV + +R ++A L++P + + + +K+
Sbjct: 557 NELGQVVNLKFKSVDERIAIANMLLSPSNWKLKRSRNKKV 596
>gi|119186661|ref|XP_001243937.1| hypothetical protein CIMG_03378 [Coccidioides immitis RS]
gi|392870658|gb|EAS32476.2| DNA-directed RNA polymerase I subunit [Coccidioides immitis RS]
Length = 1690
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 99/264 (37%), Positives = 147/264 (55%), Gaps = 18/264 (6%)
Query: 361 QGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTT--KELIATDIMFIRSLVVPPNNLRPL 418
Q Y+ +SEV A + L+ E L + + + + D+ FI++L+VPPN RP
Sbjct: 331 QQYIPSSEVYASVRFLFEKEQEILDLVYDSRPGSGRRSHVNADMFFIKNLLVPPNKYRP- 389
Query: 419 SMEQMPP--VEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRG--DTLNN 474
+ +Q P +E +N + IL C + + ++E+ E++ IR D L+
Sbjct: 390 AAQQGPGQIMEAQQNTSFTRILKLCDQINQI-----SRERQGDNGESISRIRSYRDLLHA 444
Query: 475 KLQNSWHELQYNVDLLMDAKLN-INKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
+Q LQ V+ L+D N G DG+KQ L+ K G+ R+NMMGKRVNFA
Sbjct: 445 IVQ-----LQDAVNSLIDRDRNPAQGAAGIQNEDGIKQRLEKKDGLFRKNMMGKRVNFAA 499
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
RSVI+PDP + + IG+PL FAK LTYP PVT N L++ VINGP++YPGA ++NE
Sbjct: 500 RSVISPDPNIETNEIGIPLVFAKKLTYPEPVTNHNYWELKQAVINGPDIYPGAAAVENEL 559
Query: 594 GSVVRISSSQAVQRESLAKRLITP 617
G VV + +R ++A L++P
Sbjct: 560 GQVVNLKFKSVDERIAIANMLLSP 583
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 65/116 (56%), Gaps = 2/116 (1%)
Query: 130 TDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+D E+K +SV ++ + T +S + +PGGLYD A+G + CTTC N C GH G
Sbjct: 21 SDNEIKSVSVKRIHNTPTLDSFNNPVPGGLYDPALGAWGDH--VCTTCRLNAWSCAGHSG 78
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQA 245
HIELPV V N FF + LLK C CH+ + ++ +++LL G V +A
Sbjct: 79 HIELPVQVYNVTFFDQLFRLLKAQCIYCHRFRMSKIQINTYVCKLRLLQYGLVEEA 134
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 64/100 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IG+PL FAK LTYP PVT N L++ VINGP++YPGA ++
Sbjct: 497 FAARSVISPDPNIETNEIGIPLVFAKKLTYPEPVTNHNYWELKQAVINGPDIYPGAAAVE 556
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI 113
NE G VV + +R ++A L++P + + + +K+
Sbjct: 557 NELGQVVNLKFKSVDERIAIANMLLSPSNWKLKRSRNKKV 596
>gi|226289059|gb|EEH44571.1| DNA-directed RNA polymerase I subunit RPA1 [Paracoccidioides
brasiliensis Pb18]
Length = 1691
Score = 155 bits (392), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 102/277 (36%), Positives = 153/277 (55%), Gaps = 20/277 (7%)
Query: 347 SLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKEL--IATDIMF 404
S NK S+Q Q ++ + EV A + L+ E L + ++ ++ D+ F
Sbjct: 314 SRNKPSDQ----GAQQFMPSPEVYASLRLLFEREQEVLNLVYDSRPRSRHRPRVSPDLFF 369
Query: 405 IRSLVVPPNNLRPLSMEQMPPV-EHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEA 463
I++++VPPN RPL+ + E +N + IL C + + ++E+ +E+
Sbjct: 370 IKTILVPPNKYRPLAASGSSDIIEAQQNTSFTRILKLCDQINQI-----SRERQGDSTES 424
Query: 464 LKGIRG--DTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQ-IDGLKQMLDGKTGMI 520
+R D L +Q LQ V+ L+D N N+ A Q DG+KQ L+ K G+
Sbjct: 425 ATRLRDYRDLLQTIVQ-----LQDAVNSLIDRDKNPNQGAAAMQNEDGIKQRLEKKDGLF 479
Query: 521 RQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGP 580
R+NMMGKRVNFA RSVI+PDP + + IGVPL FAK LTYP PVT N L++ VINGP
Sbjct: 480 RKNMMGKRVNFAARSVISPDPNIETNEIGVPLVFAKKLTYPEPVTNHNYRELKQAVINGP 539
Query: 581 NVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
++YPGA ++NE G VV + +R ++A L++P
Sbjct: 540 DIYPGAAAVENEIGQVVSLKFKGVDERIAIANMLLSP 576
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 68/120 (56%), Gaps = 2/120 (1%)
Query: 130 TDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+D+E+K +S+ ++++ +SL + +PGGLYD A+G + CTTC N C GH G
Sbjct: 21 SDEEIKTISIKRIYNTPALDSLNNPVPGGLYDPALGAWGDH--ICTTCRLNSWSCNGHSG 78
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLE 249
HIELPV V N FF + LL+ C CH+ + + +++LL G + +A ++
Sbjct: 79 HIELPVHVYNVTFFDQLFRLLRAQCVYCHRFRMSRVDVKSYACKMRLLQYGLIEEAAAID 138
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 59/89 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IGVPL FAK LTYP PVT N L++ VINGP++YPGA ++
Sbjct: 490 FAARSVISPDPNIETNEIGVPLVFAKKLTYPEPVTNHNYRELKQAVINGPDIYPGAAAVE 549
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPED 102
NE G VV + +R ++A L++P +
Sbjct: 550 NEIGQVVSLKFKGVDERIAIANMLLSPSN 578
>gi|18977935|ref|NP_579292.1| DNA-directed RNA polymerase subunit A' [Pyrococcus furiosus DSM
3638]
gi|18893705|gb|AAL81687.1| DNA-directed RNA polymerase subunit a' [Pyrococcus furiosus DSM
3638]
Length = 907
Score = 155 bits (391), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 140/508 (27%), Positives = 213/508 (41%), Gaps = 145/508 (28%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHI 191
QE++++S V+V P T++ G+ I GG+ D MG I G C TCG +C GH GHI
Sbjct: 16 QEIRKMSAVEVTVPDTYDDDGYPIEGGVMDKRMGVIDP-GLRCETCGGRAGECPGHFGHI 74
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEET 251
EL PVI+ F + + +L+ +C C +IKL D +++EE
Sbjct: 75 ELARPVIHVGFAKTIYRILESTCREC--------------GRIKLTD-------EEIEEY 113
Query: 252 LFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRK 311
+ + ++L + RS F + H K K
Sbjct: 114 M-----------KKIELARNR-----------------------RSEFNEIIKEIHKKAK 139
Query: 312 ----CIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQG----- 362
C C P I +++ I IRK EQG
Sbjct: 140 ERMVCPHCGAPQYPIKFEKPTIYWE-----------------------IRKDEQGNEYRH 176
Query: 363 YVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQ 422
+M +EV +K+ + +P+L E + M + L VPP RP
Sbjct: 177 RLMPTEVRDWLEKIPDKD-------LPLLGLDPEKSRPEWMVLTVLPVPPVTARP----- 224
Query: 423 MPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNS--- 479
S+ + + + DL + + IR +NN+L+ +
Sbjct: 225 -----------------------SITLETGIRAEDDLTHKLVDIIR---INNRLKQNIEA 258
Query: 480 ----------WHELQYNVDLLMDAK---LNINKTTGAHQIDGLKQMLDGKTGMIRQNMMG 526
W LQY+V ++ + + K + L Q L GK G R N+ G
Sbjct: 259 GAPQLIIEDLWDLLQYHVTTYINNEAPGVPPAKHKSGRPLKTLAQRLKGKEGRFRGNLSG 318
Query: 527 KRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGA 586
KRVNF+ R+VI+PDP ++I+ +GVP+E A LT P VT +N+ LRKMV+NGP+ YPGA
Sbjct: 319 KRVNFSARTVISPDPMISINEVGVPVEVAMELTVPEKVTEFNIERLRKMVLNGPDKYPGA 378
Query: 587 NMIQNEDGSVVRISSSQAVQRESLAKRL 614
N + + +G RI S +E+LA +L
Sbjct: 379 NYVIDPEGRRRRIMDS---NKETLANQL 403
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 57/84 (67%), Gaps = 3/84 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP ++I+ +GVP+E A LT P VT +N+ LRKMV+NGP+ YPGAN +
Sbjct: 323 FSARTVISPDPMISINEVGVPVEVAMELTVPEKVTEFNIERLRKMVLNGPDKYPGANYVI 382
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ +G RI S +E+LA +L
Sbjct: 383 DPEGRRRRIMDS---NKETLANQL 403
>gi|397652056|ref|YP_006492637.1| DNA-directed RNA polymerase subunit A' [Pyrococcus furiosus COM1]
gi|393189647|gb|AFN04345.1| DNA-directed RNA polymerase subunit A' [Pyrococcus furiosus COM1]
Length = 910
Score = 155 bits (391), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 140/508 (27%), Positives = 213/508 (41%), Gaps = 145/508 (28%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHI 191
QE++++S V+V P T++ G+ I GG+ D MG I G C TCG +C GH GHI
Sbjct: 19 QEIRKMSAVEVTVPDTYDDDGYPIEGGVMDKRMGVIDP-GLRCETCGGRAGECPGHFGHI 77
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEET 251
EL PVI+ F + + +L+ +C C +IKL D +++EE
Sbjct: 78 ELARPVIHVGFAKTIYRILESTCREC--------------GRIKLTD-------EEIEEY 116
Query: 252 LFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRK 311
+ + ++L + RS F + H K K
Sbjct: 117 M-----------KKIELARNR-----------------------RSEFNEIIKEIHKKAK 142
Query: 312 ----CIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQG----- 362
C C P I +++ I IRK EQG
Sbjct: 143 ERMVCPHCGAPQYPIKFEKPTIYWE-----------------------IRKDEQGNEYRH 179
Query: 363 YVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQ 422
+M +EV +K+ + +P+L E + M + L VPP RP
Sbjct: 180 RLMPTEVRDWLEKIPDKD-------LPLLGLDPEKSRPEWMVLTVLPVPPVTARP----- 227
Query: 423 MPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNS--- 479
S+ + + + DL + + IR +NN+L+ +
Sbjct: 228 -----------------------SITLETGIRAEDDLTHKLVDIIR---INNRLKQNIEA 261
Query: 480 ----------WHELQYNVDLLMDAK---LNINKTTGAHQIDGLKQMLDGKTGMIRQNMMG 526
W LQY+V ++ + + K + L Q L GK G R N+ G
Sbjct: 262 GAPQLIIEDLWDLLQYHVTTYINNEAPGVPPAKHKSGRPLKTLAQRLKGKEGRFRGNLSG 321
Query: 527 KRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGA 586
KRVNF+ R+VI+PDP ++I+ +GVP+E A LT P VT +N+ LRKMV+NGP+ YPGA
Sbjct: 322 KRVNFSARTVISPDPMISINEVGVPVEVAMELTVPEKVTEFNIERLRKMVLNGPDKYPGA 381
Query: 587 NMIQNEDGSVVRISSSQAVQRESLAKRL 614
N + + +G RI S +E+LA +L
Sbjct: 382 NYVIDPEGRRRRIMDS---NKETLANQL 406
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 57/84 (67%), Gaps = 3/84 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP ++I+ +GVP+E A LT P VT +N+ LRKMV+NGP+ YPGAN +
Sbjct: 326 FSARTVISPDPMISINEVGVPVEVAMELTVPEKVTEFNIERLRKMVLNGPDKYPGANYVI 385
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ +G RI S +E+LA +L
Sbjct: 386 DPEGRRRRIMDS---NKETLANQL 406
>gi|378727241|gb|EHY53700.1| DNA-directed RNA polymerase I subunit A1 [Exophiala dermatitidis
NIH/UT8656]
Length = 1744
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 98/260 (37%), Positives = 143/260 (55%), Gaps = 17/260 (6%)
Query: 361 QGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKEL-IATDIMFIRSLVVPPNNLRPLS 419
Q Y+ +EV A L+ E L + K ++ D+ F+ +++VPPN RPL+
Sbjct: 339 QSYMTPNEVYAALTLLFDREQEVLSLMYASQPGRKHAPVSPDMFFMTAVLVPPNRFRPLA 398
Query: 420 ME---QMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKL 476
+ QM +E+ N I+ + ++ ++ MK D +R TLN +
Sbjct: 399 RQGPDQM--LENQMNGTLNKIIKAANDVRHILRDMKRARTDD-------SVRPRTLNESI 449
Query: 477 QNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSV 536
Q + LQ V+ L+D+ +G G+KQ+L+ K G+ R +MMGKRVNFA RSV
Sbjct: 450 QAAI-VLQETVNALIDSP---PPASGKPTDQGIKQILEKKEGLFRMHMMGKRVNFAARSV 505
Query: 537 ITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSV 596
I+PDP + + IGVPL FAK LTYP PVT N L K VING + YPGA I+NE+G V
Sbjct: 506 ISPDPNIETNEIGVPLVFAKKLTYPEPVTSHNYEELSKAVINGMDKYPGAAAIENENGMV 565
Query: 597 VRISSSQAVQRESLAKRLIT 616
+ + QR++LAK+L+T
Sbjct: 566 LSLKRKTLDQRKALAKQLMT 585
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 58/86 (67%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IGVPL FAK LTYP PVT N L K VING + YPGA I+
Sbjct: 500 FAARSVISPDPNIETNEIGVPLVFAKKLTYPEPVTSHNYEELSKAVINGMDKYPGAAAIE 559
Query: 74 NEDGSVVRISSSQAVQRESLAKRLIT 99
NE+G V+ + QR++LAK+L+T
Sbjct: 560 NENGMVLSLKRKTLDQRKALAKQLMT 585
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 64/125 (51%), Gaps = 8/125 (6%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
L E++++SV ++++ + +S+ IPGG++DLA+G I C+TC N
Sbjct: 15 LAFSRLASDEIRRISVKQIYATPSLDSMFGPIPGGVHDLALGAIQALDANCSTCRMNAIH 74
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQ----IKLLDA 239
C GH GHIELPVP + + LL+ C CH+ +INQ ++LL
Sbjct: 75 CSGHCGHIELPVPCYHPQYMDSTLRLLRAKCAYCHRFKAAPN----YINQTVCALRLLQY 130
Query: 240 GYVTQ 244
G V +
Sbjct: 131 GLVEE 135
>gi|225681892|gb|EEH20176.1| DNA-directed RNA polymerase I subunit RPA1 [Paracoccidioides
brasiliensis Pb03]
Length = 1691
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 97/263 (36%), Positives = 147/263 (55%), Gaps = 16/263 (6%)
Query: 361 QGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKEL--IATDIMFIRSLVVPPNNLRPL 418
Q ++ + EV A + L+ E L + ++ ++ D+ FI++++VPPN RPL
Sbjct: 324 QQFMPSPEVYASLRLLFEREQEVLNLVYDSRPRSRHRPRVSPDLFFIKTILVPPNKYRPL 383
Query: 419 SMEQMPPV-EHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRG--DTLNNK 475
+ + E +N + IL C + + ++E+ +E+ +R D L
Sbjct: 384 AASGSSDIIEAQQNTSFTRILKLCDQINQI-----SRERQGDSTESATRLRDYRDLLQTI 438
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQ-IDGLKQMLDGKTGMIRQNMMGKRVNFAGR 534
+Q LQ V+ L+D N N+ A Q DG+KQ L+ K G+ R+NMMGKRVNFA R
Sbjct: 439 VQ-----LQDAVNSLIDRDKNPNQGAAAMQNEDGIKQRLEKKDGLFRKNMMGKRVNFAAR 493
Query: 535 SVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDG 594
SVI+PDP + + IGVPL FAK LTYP PVT N L++ VINGP++YPGA ++NE G
Sbjct: 494 SVISPDPNIETNEIGVPLVFAKKLTYPEPVTNHNYRELKQAVINGPDIYPGAAAVENEIG 553
Query: 595 SVVRISSSQAVQRESLAKRLITP 617
VV + +R ++A L++P
Sbjct: 554 QVVSLKFKGVDERIAIANMLLSP 576
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 68/120 (56%), Gaps = 2/120 (1%)
Query: 130 TDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+D+E+K +S+ ++++ +SL + +PGGLYD A+G + CTTC N C GH G
Sbjct: 21 SDEEIKTISIKRIYNTPALDSLNNPVPGGLYDPALGAWGDH--ICTTCRLNSWSCNGHSG 78
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLE 249
HIELPV V N FF + LL+ C CH+ + + +++LL G + +A ++
Sbjct: 79 HIELPVHVYNVTFFDQLFRLLRAQCVYCHRFRMSRVDVKSYACKMRLLQYGLIEEAAAID 138
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 59/89 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IGVPL FAK LTYP PVT N L++ VINGP++YPGA ++
Sbjct: 490 FAARSVISPDPNIETNEIGVPLVFAKKLTYPEPVTNHNYRELKQAVINGPDIYPGAAAVE 549
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPED 102
NE G VV + +R ++A L++P +
Sbjct: 550 NEIGQVVSLKFKGVDERIAIANMLLSPSN 578
>gi|387594502|gb|EIJ89526.1| RNA polymerase 2 [Nematocida parisii ERTm3]
Length = 1379
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 118/439 (26%), Positives = 213/439 (48%), Gaps = 60/439 (13%)
Query: 183 KCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYV 242
+C GH GHI+LP+PV N + + + +LK +C +C++ + + QIKL GY
Sbjct: 23 RCLGHFGHIDLPLPVYNPMTYDVLTKVLKQACTVCYRFRMGKDESEGYTAQIKLARYGYE 82
Query: 243 TQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQ 302
+A + + L ++++ + V +++ + GT + + +R+ F
Sbjct: 83 IEAAQVGDLL---KDMKYAEVKEV------LKNTITEGTAQKEDSVETMTHAIRNRFFGL 133
Query: 303 VLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQG 362
+ C++C + I+ +I+ I+K+ + +K +I++
Sbjct: 134 Q-----NKACMWCGSSERKITSGSLRIL----IEKE--------AQSKEGPSVIKEE--- 173
Query: 363 YVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIM----FIRSLVVPPNNLRPL 418
++ E +KL NE L L P + +++ T+ + FI ++V PN LRP+
Sbjct: 174 LLLPIEAVQMVQKLTQNEEGLLGELFPSMH--RKVQGTNFLLPMFFIEVVLVTPNQLRPM 231
Query: 419 S-MEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQ 477
+ + V + R YQ+I+ C + +L + K + + + KLQ
Sbjct: 232 NKLANESIVPNPRTVAYQNIISVCIDV------------FNLEDRSAKSVTANYI--KLQ 277
Query: 478 NSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVI 537
EL D+ ++ Q GLKQ+++ K G+ R+N+MGKRVN+ RSVI
Sbjct: 278 EVVSELYSARDV---------SSSNKAQAQGLKQLIEKKDGIFRKNIMGKRVNYIARSVI 328
Query: 538 TPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
+PDP + +D +G+P+EFA LT PV ++P N+ LR+ VINGP YPGA +++ G ++
Sbjct: 329 SPDPAIGVDEVGLPVEFASKLTIPVGISPVNIEGLRQAVINGPE-YPGAEFVEDSSGRLI 387
Query: 598 RISSSQAVQRESLAKRLIT 616
+ +R LA +L+T
Sbjct: 388 SLKYISRDKRIHLANQLLT 406
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Query: 17 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 76
RSVI+PDP + +D +G+P+EFA LT PV ++P N+ LR+ VINGP YPGA +++
Sbjct: 325 RSVISPDPAIGVDEVGLPVEFASKLTIPVGISPVNIEGLRQAVINGPE-YPGAEFVEDSS 383
Query: 77 GSVVRISSSQAVQRESLAKRLIT 99
G ++ + +R LA +L+T
Sbjct: 384 GRLISLKYISRDKRIHLANQLLT 406
>gi|427780187|gb|JAA55545.1| Putative rna polymerase iii large subunit [Rhipicephalus
pulchellus]
Length = 1339
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 69/142 (48%), Positives = 106/142 (74%), Gaps = 8/142 (5%)
Query: 479 SWHELQYNVDLLMDA---KLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRS 535
+W+ LQ V++++D+ +LN NK T G+KQ+L+ K G+ R++MMGKRVN+A RS
Sbjct: 4 AWNALQVAVNVVVDSELDRLNTNKGT-----PGIKQILEKKEGLFRKHMMGKRVNYAARS 58
Query: 536 VITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGS 595
VI+PDPY++++ IGVP+ FA L+YP PVT N+ LR+ VINGP++YPGA +++ EDG
Sbjct: 59 VISPDPYIDVEEIGVPMVFATKLSYPEPVTERNIAELRRAVINGPDIYPGALLVEREDGG 118
Query: 596 VVRISSSQAVQRESLAKRLITP 617
V+R+ + +RE++AK+L+TP
Sbjct: 119 VIRLDPTNRTRREAVAKQLLTP 140
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 48/104 (46%), Positives = 74/104 (71%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDPY++++ IGVP+ FA L+YP PVT N+ LR+ VINGP++YPGA +++
Sbjct: 54 YAARSVISPDPYIDVEEIGVPMVFATKLSYPEPVTERNIAELRRAVINGPDIYPGALLVE 113
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKIITRQ 117
EDG V+R+ + +RE++AK+L+TP + R + KI+ R
Sbjct: 114 REDGGVIRLDPTNRTRREAVAKQLLTPTEAPQRTFARSKIVHRH 157
>gi|345562788|gb|EGX45801.1| hypothetical protein AOL_s00117g6 [Arthrobotrys oligospora ATCC
24927]
Length = 1634
Score = 152 bits (384), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 88/218 (40%), Positives = 132/218 (60%), Gaps = 15/218 (6%)
Query: 402 IMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLS 461
+ F+++++VPP R S E+ +N + + IL S ++ + + +SDL
Sbjct: 330 MFFLQAVIVPPTPFRAPSFAGNELNENPQNSILKKILDSSIRIRDI----NDAARSDLDK 385
Query: 462 EALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTG--AHQIDGLKQMLDGKTGM 519
+ G KL + LQ NV+L +D+ + A I G+KQ+L+ K G+
Sbjct: 386 HSAFG--------KLIREFINLQDNVNLFIDSTKGGGAVSARQAAAIIGIKQVLEKKEGL 437
Query: 520 IRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVING 579
R+NMMGKRVN+A RSVI+PDP + + IGVPL FAK LTYP PVTP NV ++R+ V+NG
Sbjct: 438 FRKNMMGKRVNYAARSVISPDPNIETNEIGVPLVFAKKLTYPEPVTPHNVDVMRQAVMNG 497
Query: 580 PNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
PN++PGA I+NE+G + R+ S A R++LA +L+TP
Sbjct: 498 PNIWPGATHIENENGRLQRLPLS-AESRKALANQLLTP 534
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 70/98 (71%), Gaps = 1/98 (1%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP + + IGVPL FAK LTYP PVTP NV ++R+ V+NGPN++PGA I+
Sbjct: 449 YAARSVISPDPNIETNEIGVPLVFAKKLTYPEPVTPHNVDVMRQAVMNGPNIWPGATHIE 508
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKE 111
NE+G + R+ S A R++LA +L+TP + ++ K+
Sbjct: 509 NENGRLQRLPLS-AESRKALANQLLTPSEATLKSFNKK 545
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
+ + + +++ +SV ++ +P TF+ G+ + GGLYD A+GP R C+TC +
Sbjct: 14 VHFGFLSTKDILSISVKQIVNPSTFDVNGNPVDGGLYDPALGPFG-RSIACSTCNLSNEN 72
Query: 184 CKGHIGHIELPVPVINTLFF 203
C GH+GHI LP PV + +FF
Sbjct: 73 CPGHVGHISLPTPVYHPVFF 92
>gi|336468277|gb|EGO56440.1| hypothetical protein NEUTE1DRAFT_122981 [Neurospora tetrasperma
FGSC 2508]
gi|350289470|gb|EGZ70695.1| putative DNA-directed RNA polymerase I [Neurospora tetrasperma FGSC
2509]
Length = 1701
Score = 152 bits (384), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 99/269 (36%), Positives = 144/269 (53%), Gaps = 19/269 (7%)
Query: 361 QGYVMASEVEADFKKLWTNEHLFLKCLI---PVLDTTKELIATDIMFIRSLVVPPNNLRP 417
Q Y+ + EV+ L+ E + L P K + A D+ FI++L+VPPN RP
Sbjct: 334 QRYISSLEVKERLNFLFQKEQEIVSLLFSSKPRPKHAKPMTA-DMFFIQTLLVPPNKFRP 392
Query: 418 LSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKG-----IRGDTL 472
+ E +N LY+ IL S ++A ++E +SE KG R
Sbjct: 393 EARMGDQVTEAQQNSLYKLILRG-----SSMVAQISRE----VSETAKGNAPEDGRRARD 443
Query: 473 NNKLQNSWHELQYNVDLLMDAKLN-INKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNF 531
N L +W +LQ V+ L+D N + G DG+KQ L+ K G+ R+NMMGKRVNF
Sbjct: 444 INALYQAWTQLQDAVNSLIDRDKNPVQGAAGKRNEDGIKQKLEKKEGLFRKNMMGKRVNF 503
Query: 532 AGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQN 591
A RSVI+PDP + IGVP FA+ LTYP PVT N L+ V NG +PGA+ I+
Sbjct: 504 AARSVISPDPNIETSEIGVPPVFARKLTYPEPVTSHNYHDLKNAVQNGMEKWPGASAIEM 563
Query: 592 EDGSVVRISSSQAVQRESLAKRLITPEGN 620
E+G ++ + + + +R++LA +L+ P N
Sbjct: 564 ENGQIINLRNKSSEERQALANQLLAPTNN 592
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 81/280 (28%), Positives = 134/280 (47%), Gaps = 45/280 (16%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDP-CTTCGNNYT 182
++ + TD E++ +SV K+ + TF+SL + +PGGLYD A+G GD CTTC +
Sbjct: 14 VEFTFLTDTEIRAVSVRKIENESTFDSLLNPVPGGLYDPALGSW---GDSLCTTCNLGQS 70
Query: 183 KCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYV 242
+C GH GHIELPVPV + +F LL+ C CH+ +P + ++LL G +
Sbjct: 71 QCPGHPGHIELPVPVYHPVFMDQAYRLLRAQCVYCHRFRLPRREIHRYSCMLRLLQCGLL 130
Query: 243 TQAKDLEETLFNEENLRLHPAQL----------------------VQLVDSHVQSILA-H 279
+A+ ++ +E + QL ++ +++V+++L H
Sbjct: 131 KEAQMIDSFGESEFGSAIRQFQLADVPEMEDDEAEEEGNNLNDSTIRQREAYVRAVLRDH 190
Query: 280 GTKIC--DIN--DYKGGEELRSAFVAQVLSRHVK-RKCIFCATPINAIS--YQQRKIIKS 332
TK+ DIN ++G E+R A V + L+ +K +KC C + IS Y++ + K
Sbjct: 191 RTKVTMRDINKGKHEGAAEMRRALVKEFLAAIIKDKKCRTC----DGISPVYRKDRYTKI 246
Query: 333 FKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVEAD 372
F+ D L + + Q RKR M + D
Sbjct: 247 FERD-------LTQKEKAAMAQAGRKRADALAMKGGKKKD 279
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 60/100 (60%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + IGVP FA+ LTYP PVT N L+ V NG +PGA+ I+
Sbjct: 503 FAARSVISPDPNIETSEIGVPPVFARKLTYPEPVTSHNYHDLKNAVQNGMEKWPGASAIE 562
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI 113
E+G ++ + + + +R++LA +L+ P + + +K+
Sbjct: 563 MENGQIINLRNKSSEERQALANQLLAPTNNNFSGVRNKKV 602
>gi|164428077|ref|XP_956006.2| hypothetical protein NCU01638 [Neurospora crassa OR74A]
gi|18307453|emb|CAD21513.1| probable DNA-directed RNA polymerase I [Neurospora crassa]
gi|157072001|gb|EAA26770.2| hypothetical protein NCU01638 [Neurospora crassa OR74A]
Length = 1701
Score = 152 bits (384), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 99/269 (36%), Positives = 144/269 (53%), Gaps = 19/269 (7%)
Query: 361 QGYVMASEVEADFKKLWTNEHLFLKCLI---PVLDTTKELIATDIMFIRSLVVPPNNLRP 417
Q Y+ + EV+ L+ E + L P K + A D+ FI++L+VPPN RP
Sbjct: 334 QRYISSLEVKERLNFLFQKEQEIVSLLFSSKPRPKHAKPMTA-DMFFIQTLLVPPNKFRP 392
Query: 418 LSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKG-----IRGDTL 472
+ E +N LY+ IL S ++A ++E +SE KG R
Sbjct: 393 EARMGDQVTEAQQNSLYKLILRG-----SSMVAQISRE----VSETAKGNAPEDGRRARD 443
Query: 473 NNKLQNSWHELQYNVDLLMDAKLN-INKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNF 531
N L +W +LQ V+ L+D N + G DG+KQ L+ K G+ R+NMMGKRVNF
Sbjct: 444 INALYQAWTQLQDAVNSLIDRDKNPVQGAAGKRNEDGIKQKLEKKEGLFRKNMMGKRVNF 503
Query: 532 AGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQN 591
A RSVI+PDP + IGVP FA+ LTYP PVT N L+ V NG +PGA+ I+
Sbjct: 504 AARSVISPDPNIETSEIGVPPVFARKLTYPEPVTSHNYHDLKNAVQNGMEKWPGASAIEM 563
Query: 592 EDGSVVRISSSQAVQRESLAKRLITPEGN 620
E+G ++ + + + +R++LA +L+ P N
Sbjct: 564 ENGQIINLRNKSSEERQALANQLLAPTNN 592
Score = 102 bits (254), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 132/273 (48%), Gaps = 45/273 (16%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDP-CTTCGNNYT 182
++ + TD E++ +SV K+ + TF+SL + +PGGLYD A+G GD CTTC +
Sbjct: 14 VEFTFLTDTEIRAVSVRKIENESTFDSLLNPVPGGLYDPALGSW---GDSLCTTCNLGQS 70
Query: 183 KCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYV 242
+C GH GHIELPVPV + +F LL+ C CH+ +P + ++LL G +
Sbjct: 71 QCPGHPGHIELPVPVYHPVFMDQAYRLLRAQCVYCHRFRLPRREIHRYSCMLRLLQCGLL 130
Query: 243 TQAKDLEETLFNEENLRLHPAQL----------------------VQLVDSHVQSILA-H 279
+A+ ++ +E + QL ++ +++V+++L +
Sbjct: 131 KEAQMIDSFGESEFGSAIRQFQLADVPEMEDDEAEEEGNNLNDSTIRQREAYVRAVLRDY 190
Query: 280 GTKIC--DIN--DYKGGEELRSAFVAQVLSRHVK-RKCIFCATPINAIS--YQQRKIIKS 332
TK+ DIN ++G ++R A V + L+ +K +KC C + IS Y++ + K
Sbjct: 191 RTKVTMRDINKGKHEGAADMRRALVKEFLAAIIKDKKCRTC----DGISPVYRKDRYTKI 246
Query: 333 FKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVM 365
F+ D L + + Q RKR M
Sbjct: 247 FERD-------LTQKEKAAMAQAGRKRADALAM 272
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 60/100 (60%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + IGVP FA+ LTYP PVT N L+ V NG +PGA+ I+
Sbjct: 503 FAARSVISPDPNIETSEIGVPPVFARKLTYPEPVTSHNYHDLKNAVQNGMEKWPGASAIE 562
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI 113
E+G ++ + + + +R++LA +L+ P + + +K+
Sbjct: 563 MENGQIINLRNKSSEERQALANQLLAPTNNNFSGVRNKKV 602
>gi|308811186|ref|XP_003082901.1| RNA polymerase I, large subunit (ISS) [Ostreococcus tauri]
gi|116054779|emb|CAL56856.1| RNA polymerase I, large subunit (ISS) [Ostreococcus tauri]
Length = 1789
Score = 152 bits (383), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 93/261 (35%), Positives = 135/261 (51%), Gaps = 20/261 (7%)
Query: 363 YVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATD-------IMFIRSLVVPPNNL 415
Y+ E A K+LW NE+ F + +K+ F+++L+V P+
Sbjct: 417 YITPIEARALLKRLWGNEYDFCSLIWATNGPSKKSKGLSERRSDPSRFFVQTLLVTPSKF 476
Query: 416 RPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNK 475
RP S EH +N +I+ + SL + + A + +R
Sbjct: 477 RPASKMGDMIFEHPQNTSLTTIIQANLSLAELFRTPPTVPEP-PEVRAGRAVR------- 528
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRS 535
+W LQ ++ L+DA T A Q G++Q L+ K G+ R NMMGKRVNFA RS
Sbjct: 529 ---AWLALQSGINRLIDA--TKADTQEAKQAIGIRQQLEKKEGLFRMNMMGKRVNFAARS 583
Query: 536 VITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGS 595
VI+PDPYL IGVP FAK LT+P VTP NV L+R +V NGP+++PGAN I++E G
Sbjct: 584 VISPDPYLGTSEIGVPPVFAKKLTFPELVTPHNVDLMRTLVENGPDIHPGANAIEDERGR 643
Query: 596 VVRISSSQAVQRESLAKRLIT 616
V+ + A +R ++AK L+
Sbjct: 644 VIHLDKFTAEKRAAIAKTLLA 664
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 89/172 (51%), Gaps = 13/172 (7%)
Query: 77 GSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKIITRQEVVPEILKLKYYTDQEVKQ 136
G SS+ + RE P +HR ++++ + ++E+ +Y EV++
Sbjct: 43 GDDAHTSSAMSTSRE--------PRVARHR--VQQRGLVQREIAS--ASFSFYDADEVRK 90
Query: 137 LSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVP 196
+SV ++ +P F+ L + +P GLYD A+GP + C TC C GH GHIEL VP
Sbjct: 91 ISVKRITNPTLFDGLNNAVPDGLYDPALGPTDAK-TTCVTCKYPGGMCDGHFGHIELVVP 149
Query: 197 VINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
V N L F V LLK +CF CH+ + + F ++++L G V A+++
Sbjct: 150 VYNPLTFGTVVRLLKTTCFHCHRFRMHESRVRRFRERLEMLMDGDVEGAENV 201
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 59/86 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDPYL IGVP FAK LT+P VTP NV L+R +V NGP+++PGAN I+
Sbjct: 579 FAARSVISPDPYLGTSEIGVPPVFAKKLTFPELVTPHNVDLMRTLVENGPDIHPGANAIE 638
Query: 74 NEDGSVVRISSSQAVQRESLAKRLIT 99
+E G V+ + A +R ++AK L+
Sbjct: 639 DERGRVIHLDKFTAEKRAAIAKTLLA 664
>gi|321257682|ref|XP_003193673.1| DNA-directed RNA polymerase I 190 kDa polypeptide [Cryptococcus
gattii WM276]
gi|317460143|gb|ADV21886.1| DNA-directed RNA polymerase I 190 kDa polypeptide, putative
[Cryptococcus gattii WM276]
Length = 1726
Score = 151 bits (382), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 95/282 (33%), Positives = 155/282 (54%), Gaps = 12/282 (4%)
Query: 351 SSNQI--IRKREQGYVMASEVEADFKKLWTNEHLFLKCLI------PVLDTTKELIATDI 402
+S QI R R + + +EV A + L+ E + + L + D+
Sbjct: 331 ASGQIKGTRGRHERVMSPAEVRAHLRLLFNKEPEICRLIYGRHGNPAALSSVAPPPLADM 390
Query: 403 MFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNK---EQSDL 459
F+ + V P RP + E+S+N L ++L +C ++ + + N+ E+ +L
Sbjct: 391 FFMEVVPVTPTRFRPAARMGDELFENSQNSLLTAVLTTCQRIQKLNQDLINQAKAERGEL 450
Query: 460 LSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLN-INKTTGAHQIDGLKQMLDGKTG 518
+ +A+ +G L + +LQ++V+ +D+ N G G+KQ+L+ K G
Sbjct: 451 VLDAVAKAQGSRTFELLLEALIKLQHDVNSFVDSTKNPAVMRQGKLPPPGVKQLLEKKEG 510
Query: 519 MIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVIN 578
+ R++MMGKRVN+A RSVI+PD + + IG+P FAK LTYP PVT NV LR++VIN
Sbjct: 511 LFRKHMMGKRVNYAARSVISPDINIETNEIGIPPVFAKKLTYPEPVTQQNVAELRQLVIN 570
Query: 579 GPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPEGN 620
GP ++PGA ++QNEDG+ + + QR SLA +L+TP+G+
Sbjct: 571 GPKIHPGAALVQNEDGTQISLDKLTLDQRISLASQLLTPQGS 612
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 71/122 (58%), Gaps = 2/122 (1%)
Query: 133 EVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIE 192
++K +SV KV +PI ++L GGLYD +GP+ R D C TC +Y C GH GHIE
Sbjct: 23 DIKAISVKKVDNPILLDNLNLPTRGGLYDPKLGPMGSR-DLCETCHLSYFACPGHFGHIE 81
Query: 193 LPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETL 252
LP PV + LF LL+ C CH +P ++ +++LLDAG +T++ ++ L
Sbjct: 82 LPTPVYHPLFMNQCYHLLRGVCLYCHHFKMPEIVAASYVARLRLLDAGLLTESHEV-AAL 140
Query: 253 FN 254
F+
Sbjct: 141 FD 142
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 62/91 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PD + + IG+P FAK LTYP PVT NV LR++VINGP ++PGA ++Q
Sbjct: 523 YAARSVISPDINIETNEIGIPPVFAKKLTYPEPVTQQNVAELRQLVINGPKIHPGAALVQ 582
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQ 104
NEDG+ + + QR SLA +L+TP+ +
Sbjct: 583 NEDGTQISLDKLTLDQRISLASQLLTPQGSE 613
>gi|453084899|gb|EMF12943.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Mycosphaerella populorum SO2202]
Length = 1742
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 98/285 (34%), Positives = 148/285 (51%), Gaps = 22/285 (7%)
Query: 340 LDQSLDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIA 399
LD +++ + K + E Y+ V A ++L+ ++ L + ++
Sbjct: 315 LDDAMESAATKKAKA---STESEYLNPQRVHAHIQQLFDSDAEVLSLVYGRDRRRDGPLS 371
Query: 400 TDIMFIRSLVVPPNNLRP-LSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSD 458
D+ F+++++VPPN RP + E NK Y+ IL +C VI+ D
Sbjct: 372 ADMFFVKAILVPPNQYRPEMKTTSNAIAEAQENKHYRDILANC----EVIL--------D 419
Query: 459 LLSEALKGIRG-----DTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQI-DGLKQM 512
+ E G + D L+ W LQ V+ L+D L A Q+ DG+KQ
Sbjct: 420 VQRELTTGKKAENRYRDVTYLDLERRWITLQECVNSLVDKSLAPVSGAAASQVPDGVKQK 479
Query: 513 LDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLL 572
L+ K GM R+ MMGKRVNFA R+VI+PDP + + IGVP FA LTYP PVT +NV L
Sbjct: 480 LEKKEGMFRKYMMGKRVNFAARTVISPDPNIETNEIGVPPVFAVKLTYPEPVTQYNVEEL 539
Query: 573 RKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
+ V NGP ++PGA I++E+G+VV++ A +R +LA L+ P
Sbjct: 540 QLAVRNGPYIWPGAVAIESENGAVVKLERKSADERTALANALMAP 584
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 71/127 (55%), Gaps = 2/127 (1%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
+ Y + +++ LS ++ + TF++L + +PGGLY +GP + + C TCG +
Sbjct: 14 VSFGYLSADDIRALSARRITTTTTFDTLLNPVPGGLYSAELGPFGD--NACATCGLKSPQ 71
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVT 243
C GH GHI+LPVP + F V LL+ SC C K+ + +I +++L+ G +
Sbjct: 72 CPGHPGHIDLPVPCYHPTFMDQVLKLLRASCTYCGKLKLKRIQVTRYICKLRLVRYGLLK 131
Query: 244 QAKDLEE 250
+ K+L+E
Sbjct: 132 ELKELDE 138
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 58/87 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP + + IGVP FA LTYP PVT +NV L+ V NGP ++PGA I+
Sbjct: 498 FAARTVISPDPNIETNEIGVPPVFAVKLTYPEPVTQYNVEELQLAVRNGPYIWPGAVAIE 557
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
+E+G+VV++ A +R +LA L+ P
Sbjct: 558 SENGAVVKLERKSADERTALANALMAP 584
>gi|261200871|ref|XP_002626836.1| DNA-directed RNA polymerase I subunit [Ajellomyces dermatitidis
SLH14081]
gi|239593908|gb|EEQ76489.1| DNA-directed RNA polymerase I subunit [Ajellomyces dermatitidis
SLH14081]
Length = 1645
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 151/273 (55%), Gaps = 16/273 (5%)
Query: 351 SSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKEL--IATDIMFIRSL 408
S N+ + Q ++ + EV A + L+ E L + +K + D+ FI+++
Sbjct: 267 SRNKPSEQDAQQFMPSPEVYAALRLLFEKEQEVLDLVYDSRPRSKHRPRVTPDMFFIKNI 326
Query: 409 VVPPNNLRPLSMEQMPPV-EHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGI 467
+VPPN RP++ + E +N + I+ C + + ++E+ +E++ +
Sbjct: 327 LVPPNKYRPIAANGSNDIIEAQQNTSFTRIIKLCDQINQI-----SRERQGDSTESVTRL 381
Query: 468 RG--DTLNNKLQNSWHELQYNVDLLMDAKLNINKT-TGAHQIDGLKQMLDGKTGMIRQNM 524
R D L +Q LQ V+ L+D N ++ +G DG+KQ L+ K G+ R+NM
Sbjct: 382 RDYRDLLQTIVQ-----LQDAVNSLIDRDRNPSQGISGMQNEDGIKQRLEKKDGLFRKNM 436
Query: 525 MGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYP 584
MGKRVNFA RSVI+PDP + + IGVPL FAK LTYP PVT N L++ VINGP++YP
Sbjct: 437 MGKRVNFAARSVISPDPNIETNEIGVPLVFAKKLTYPEPVTNHNYWELKQAVINGPDIYP 496
Query: 585 GANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
GA ++NE G VV + +R ++A L++P
Sbjct: 497 GAAAVENEVGQVVSLKFKSHDERMAIANMLLSP 529
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 68/120 (56%), Gaps = 2/120 (1%)
Query: 130 TDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
++ E+K +SV ++++ T ++L + +PGGLYD A+G + CTTC N C GH G
Sbjct: 21 SNDEIKSISVKRIYNTPTLDTLNNPVPGGLYDPALGAWGDH--VCTTCRLNSWSCNGHAG 78
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLE 249
HIELPV V N FF + LL+ C CH+ + + +++LL G V +A ++
Sbjct: 79 HIELPVHVYNVTFFDQLFRLLRAQCAYCHRFRMSRADIKSYTCKLRLLQYGLVEEAAAID 138
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 64/100 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IGVPL FAK LTYP PVT N L++ VINGP++YPGA ++
Sbjct: 443 FAARSVISPDPNIETNEIGVPLVFAKKLTYPEPVTNHNYWELKQAVINGPDIYPGAAAVE 502
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI 113
NE G VV + +R ++A L++P + + + +K+
Sbjct: 503 NEVGQVVSLKFKSHDERMAIANMLLSPSNFKMKRSRNKKV 542
>gi|154276528|ref|XP_001539109.1| hypothetical protein HCAG_06714 [Ajellomyces capsulatus NAm1]
gi|150414182|gb|EDN09547.1| hypothetical protein HCAG_06714 [Ajellomyces capsulatus NAm1]
Length = 1573
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 98/273 (35%), Positives = 148/273 (54%), Gaps = 16/273 (5%)
Query: 351 SSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKEL--IATDIMFIRSL 408
S N + Q ++ + EV A + L+ E L + +K + D+ FI+++
Sbjct: 314 SRNNPSEQGAQQFMPSPEVYAALRLLFEKEQEVLDLVYDSRPKSKHRPRVTPDMFFIKNI 373
Query: 409 VVPPNNLRPLSMEQMPPV-EHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGI 467
+VPPN RP++ + E +N + I+ C + + ++E+ +E++ +
Sbjct: 374 LVPPNKYRPIAATGSNDIIEAQQNISFTRIMKLCDQINQI-----SRERQGDSTESVTRL 428
Query: 468 RG--DTLNNKLQNSWHELQYNVDLLMDAKLNINK-TTGAHQIDGLKQMLDGKTGMIRQNM 524
R D L +Q LQ V+ L+D N N+ G DG+KQ L+ K G+ R+NM
Sbjct: 429 RDYRDLLQAIVQ-----LQDAVNSLIDRDRNPNQGVAGIQNEDGIKQRLEKKDGLFRKNM 483
Query: 525 MGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYP 584
MGKRVNFA RSVI+PDP + + IGVPL FAK LTYP PVT N L+ VINGP+VYP
Sbjct: 484 MGKRVNFAARSVISPDPNIETNEIGVPLVFAKKLTYPEPVTNHNYWELKNAVINGPDVYP 543
Query: 585 GANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
GA ++NE G VV + +R ++A L++P
Sbjct: 544 GAAAVENEIGQVVSLKFKSQEERLAIANMLLSP 576
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 72/128 (56%), Gaps = 2/128 (1%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNY 181
E + + +++E+K +SV +++ T +SL + +PGGLYD A+G + CTTC N
Sbjct: 13 EGVDFRVLSNEEIKTISVKLIYNTPTLDSLNNPVPGGLYDPALGAWGDH--ICTTCRLNS 70
Query: 182 TKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGY 241
C GH GHIELPV V N FF + LL+ C CH+ + + + +++LL G
Sbjct: 71 WSCNGHAGHIELPVHVYNVTFFDQLFRLLRAQCVYCHRFRMSRADIMSYTCKLRLLQYGL 130
Query: 242 VTQAKDLE 249
V +A ++
Sbjct: 131 VEEAAAID 138
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 64/101 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IGVPL FAK LTYP PVT N L+ VINGP+VYPGA ++
Sbjct: 490 FAARSVISPDPNIETNEIGVPLVFAKKLTYPEPVTNHNYWELKNAVINGPDVYPGAAAVE 549
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKII 114
NE G VV + +R ++A L++P + + + +K++
Sbjct: 550 NEIGQVVSLKFKSQEERLAIANMLLSPSNFKMKRSRSKKLL 590
>gi|405120183|gb|AFR94954.1| RNA polymerase I largest subunit [Cryptococcus neoformans var.
grubii H99]
Length = 1727
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 94/282 (33%), Positives = 155/282 (54%), Gaps = 12/282 (4%)
Query: 351 SSNQI--IRKREQGYVMASEVEADFKKLWTNEHLFLKCLI------PVLDTTKELIATDI 402
+S Q+ R R + + +EV A + L+ E + + L + D+
Sbjct: 332 ASGQVKGTRGRHERVMSPAEVRAHLRLLFGKEPEICRLIYGRHGNPAALSSVAPPPLADM 391
Query: 403 MFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNK---EQSDL 459
F+ + V P RP + E+S+N L ++L +C ++ + + N+ E+ +L
Sbjct: 392 FFMEVVPVTPTRFRPAARMGDELFENSQNSLLTTVLSTCQRIQKLNQDLINQAKAERGEL 451
Query: 460 LSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLN-INKTTGAHQIDGLKQMLDGKTG 518
+ +A+ +G L + +LQ++V+ +D+ N G G+KQ+L+ K G
Sbjct: 452 VLDAVAKAQGGRTFELLLEALIKLQHDVNSFVDSTKNPAVMRQGKLPPPGVKQLLEKKEG 511
Query: 519 MIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVIN 578
+ R++MMGKRVN+A RSVI+PD + + IG+P FAK LTYP PVT NV LR++VIN
Sbjct: 512 LFRKHMMGKRVNYAARSVISPDINIETNEIGIPPVFAKKLTYPEPVTQQNVAELRQLVIN 571
Query: 579 GPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPEGN 620
GP ++PGA ++QNEDG+ + + QR SLA +L+TP+G+
Sbjct: 572 GPKIHPGAALVQNEDGTQISLDKLTLDQRISLANQLLTPQGS 613
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 71/122 (58%), Gaps = 2/122 (1%)
Query: 133 EVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIE 192
++K +SV KV +PI ++L GGLYD +GP+ R D C TC +Y C GH GHIE
Sbjct: 23 DIKAISVKKVDNPILLDNLNLPTRGGLYDPKLGPMGSR-DLCETCHLSYFACPGHFGHIE 81
Query: 193 LPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETL 252
LP PV + LF LL+ C CH +P ++ +++LLDAG +T++ ++ L
Sbjct: 82 LPTPVYHPLFMNQCYHLLRGVCLYCHHFKMPEIVAASYVARLRLLDAGLLTESHEV-AAL 140
Query: 253 FN 254
F+
Sbjct: 141 FD 142
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 62/91 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PD + + IG+P FAK LTYP PVT NV LR++VINGP ++PGA ++Q
Sbjct: 524 YAARSVISPDINIETNEIGIPPVFAKKLTYPEPVTQQNVAELRQLVINGPKIHPGAALVQ 583
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQ 104
NEDG+ + + QR SLA +L+TP+ +
Sbjct: 584 NEDGTQISLDKLTLDQRISLANQLLTPQGSE 614
>gi|327351177|gb|EGE80034.1| DNA-directed RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
Length = 1699
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 151/273 (55%), Gaps = 16/273 (5%)
Query: 351 SSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKEL--IATDIMFIRSL 408
S N+ + Q ++ + EV A + L+ E L + +K + D+ FI+++
Sbjct: 320 SRNKPSEQDAQQFMPSPEVYAALRLLFEKEQEVLDLVYDSRLRSKHRPRVTPDMFFIKNI 379
Query: 409 VVPPNNLRPLSMEQMPPV-EHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGI 467
+VPPN RP++ + E +N + I+ C + + ++E+ +E++ +
Sbjct: 380 LVPPNKYRPIAANGSNDIIEAQQNTSFTRIIKLCDQINQI-----SRERQGDSTESVTRL 434
Query: 468 RG--DTLNNKLQNSWHELQYNVDLLMDAKLNINKT-TGAHQIDGLKQMLDGKTGMIRQNM 524
R D L +Q LQ V+ L+D N ++ +G DG+KQ L+ K G+ R+NM
Sbjct: 435 RDYRDLLQTIVQ-----LQDAVNSLIDRDRNPSQGISGMQNEDGIKQRLEKKDGLFRKNM 489
Query: 525 MGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYP 584
MGKRVNFA RSVI+PDP + + IGVPL FAK LTYP PVT N L++ VINGP++YP
Sbjct: 490 MGKRVNFAARSVISPDPNIETNEIGVPLVFAKKLTYPEPVTNHNYWELKQAVINGPDIYP 549
Query: 585 GANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
GA ++NE G VV + +R ++A L++P
Sbjct: 550 GAAAVENEVGQVVSLKFKSHDERMAIANMLLSP 582
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 68/120 (56%), Gaps = 2/120 (1%)
Query: 130 TDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
++ E+K +SV ++++ T ++L + +PGGLYD A+G + CTTC N C GH G
Sbjct: 21 SNDEIKSISVKRIYNTPTLDTLNNPVPGGLYDPALGAWGDH--VCTTCRLNSWSCNGHAG 78
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLE 249
HIELPV V N FF + LL+ C CH+ + + +++LL G V +A ++
Sbjct: 79 HIELPVHVYNVTFFDQLFRLLRAQCAYCHRFRMSRADIKSYTCKLRLLQYGLVEEAAAID 138
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 64/100 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IGVPL FAK LTYP PVT N L++ VINGP++YPGA ++
Sbjct: 496 FAARSVISPDPNIETNEIGVPLVFAKKLTYPEPVTNHNYWELKQAVINGPDIYPGAAAVE 555
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI 113
NE G VV + +R ++A L++P + + + +K+
Sbjct: 556 NEVGQVVSLKFKSHDERMAIANMLLSPSNFKMKRSRNKKV 595
>gi|239607218|gb|EEQ84205.1| DNA-directed RNA polymerase I subunit [Ajellomyces dermatitidis
ER-3]
Length = 1646
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 151/273 (55%), Gaps = 16/273 (5%)
Query: 351 SSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKEL--IATDIMFIRSL 408
S N+ + Q ++ + EV A + L+ E L + +K + D+ FI+++
Sbjct: 267 SRNKPSEQDAQQFMPSPEVYAALRLLFEKEQEVLDLVYDSRLRSKHRPRVTPDMFFIKNI 326
Query: 409 VVPPNNLRPLSMEQMPPV-EHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGI 467
+VPPN RP++ + E +N + I+ C + + ++E+ +E++ +
Sbjct: 327 LVPPNKYRPIAANGSNDIIEAQQNTSFTRIIKLCDQINQI-----SRERQGDSTESVTRL 381
Query: 468 RG--DTLNNKLQNSWHELQYNVDLLMDAKLNINKT-TGAHQIDGLKQMLDGKTGMIRQNM 524
R D L +Q LQ V+ L+D N ++ +G DG+KQ L+ K G+ R+NM
Sbjct: 382 RDYRDLLQTIVQ-----LQDAVNSLIDRDRNPSQGISGMQNEDGIKQRLEKKDGLFRKNM 436
Query: 525 MGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYP 584
MGKRVNFA RSVI+PDP + + IGVPL FAK LTYP PVT N L++ VINGP++YP
Sbjct: 437 MGKRVNFAARSVISPDPNIETNEIGVPLVFAKKLTYPEPVTNHNYWELKQAVINGPDIYP 496
Query: 585 GANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
GA ++NE G VV + +R ++A L++P
Sbjct: 497 GAAAVENEVGQVVSLKFKSHDERMAIANMLLSP 529
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 68/120 (56%), Gaps = 2/120 (1%)
Query: 130 TDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
++ E+K +SV ++++ T ++L + +PGGLYD A+G + CTTC N C GH G
Sbjct: 21 SNDEIKSISVKRIYNTPTLDTLNNPVPGGLYDPALGAWGDH--VCTTCRLNSWSCNGHAG 78
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLE 249
HIELPV V N FF + LL+ C CH+ + + +++LL G V +A ++
Sbjct: 79 HIELPVHVYNVTFFDQLFRLLRAQCAYCHRFRMSRADIKSYTCKLRLLQYGLVEEAAAID 138
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 64/100 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IGVPL FAK LTYP PVT N L++ VINGP++YPGA ++
Sbjct: 443 FAARSVISPDPNIETNEIGVPLVFAKKLTYPEPVTNHNYWELKQAVINGPDIYPGAAAVE 502
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI 113
NE G VV + +R ++A L++P + + + +K+
Sbjct: 503 NEVGQVVSLKFKSHDERMAIANMLLSPSNFKMKRSRNKKV 542
>gi|268532860|ref|XP_002631558.1| Hypothetical protein CBG20734 [Caenorhabditis briggsae]
Length = 1723
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 85/257 (33%), Positives = 140/257 (54%), Gaps = 13/257 (5%)
Query: 366 ASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDI------MFIRSLVVPPNNLRPLS 419
+EV F+ L+ N+ L L P+L EL D+ +F+ ++VPP RP+
Sbjct: 308 GAEVREHFRALFKNDGKLLLKLFPML--VDELNGEDMICPLDGLFLERILVPPKKFRPIR 365
Query: 420 MEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNS 479
M + E + + +L + ++ ++ + MK S+L+ +RG T+N ++ ++
Sbjct: 366 MFKGAQYEDPQTMNLRKVLEATETISAISLIMKGDNSSELIQLVKDRVRGKTINAQMHDA 425
Query: 480 WHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
+ +LQ + + D LN I G+KQ+L+ K G+ R +MMGKRVNFA RSVITP
Sbjct: 426 YLQLQLRANAIFDQDLNKGDRD---SIAGIKQILEKKQGLFRMHMMGKRVNFACRSVITP 482
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
DPYL+ID IG+P FAK LT+ PV +N+ +++++ GP+ +PGAN G +
Sbjct: 483 DPYLDIDEIGIPDIFAKKLTFTEPVNAFNIKEMKELLHRGPHQHPGANFFVEPSGKKTML 542
Query: 600 SS--SQAVQRESLAKRL 614
+ +R+ +AK L
Sbjct: 543 GDKPDEVKRRKLMAKTL 559
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 72/131 (54%), Gaps = 3/131 (2%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
KL+ Y E+ +LSV+KV TF+ +GH I GGLYD +GP + R D C TC
Sbjct: 18 FKLRNYFPHEIDKLSVLKVIQTKTFDEVGHPIEGGLYDPVLGPDNIR-DNCRTCNQYERH 76
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIP--ATSQLLFINQIKLLDAGY 241
C GH+GHI+L VPV N L F+ LLK SC CH++ + + + Q++ + G
Sbjct: 77 CPGHMGHIQLAVPVFNPLLFQFTYNLLKGSCVHCHRLTCKGDGVNARMLLAQLRCFELGV 136
Query: 242 VTQAKDLEETL 252
A DLE L
Sbjct: 137 EHVAFDLEAIL 147
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVITPDPYL+ID IG+P FAK LT+ PV +N+ +++++ GP+ +PGAN
Sbjct: 474 FACRSVITPDPYLDIDEIGIPDIFAKKLTFTEPVNAFNIKEMKELLHRGPHQHPGANFFV 533
Query: 74 NEDGSVVRISS--SQAVQRESLAKRL 97
G + + +R+ +AK L
Sbjct: 534 EPSGKKTMLGDKPDEVKRRKLMAKTL 559
>gi|401016|sp|P31813.1|RPOA1_THECE RecName: Full=DNA-directed RNA polymerase subunit A'
gi|48141|emb|CAA47723.1| Subunit A' of DNA-dependent RNA polymerase [Thermococcus celer]
Length = 905
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 129/492 (26%), Positives = 220/492 (44%), Gaps = 113/492 (22%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHI 191
QE++++S ++ P T++ G+ I GGL D +G I G C TCG +C GH GH+
Sbjct: 19 QEIRKMSAAEITVPDTYDEDGYPIEGGLMDKRLGVIDP-GLRCETCGARAGECPGHFGHV 77
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEET 251
EL PVI+ F + + +L+ +C C +IKL D +++EE
Sbjct: 78 ELARPVIHVGFAKTIHRVLESTCREC--------------GRIKLTD-------EEIEEY 116
Query: 252 LFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRK 311
H ++ N K + L + R V
Sbjct: 117 F--------------------------HKFEVTG-NRKKAKDRLIKEIHKKAKERMV--- 146
Query: 312 CIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVEA 371
C C +P I +++ + + D++ N+ +++ M SEV
Sbjct: 147 CPHCGSPQFPIKFERPTVYWELRKDEEG---------NEYKHRM---------MPSEVRD 188
Query: 372 DFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRP-LSMEQMPPVEHSR 430
+K+ + +P++ E + M + L VPP +RP +++E E
Sbjct: 189 RLEKIPDRD-------LPLIGLDAEKARPEWMVLTVLPVPPVTMRPSITLESGIRAE--- 238
Query: 431 NKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLL 490
+ L ++ I+ + N+ +S++ + A + I +++ W LQY+V
Sbjct: 239 DDLTHKLVD--------IIRINNRLKSNIEAGAPQLI--------IEDLWDLLQYHVTTY 282
Query: 491 MDAKLNINKTTG--------AHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPY 542
++ N+T+G + L Q L GK G R N+ GKRVNF+ R+VI+PDP
Sbjct: 283 IN-----NETSGIPPAKHKSGRPLKTLSQRLKGKEGRFRGNLSGKRVNFSARTVISPDPM 337
Query: 543 LNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSS 602
++I+ +GVP+ A LT P VT +N LRKMV+NGP YPGAN + + +G +R+ +
Sbjct: 338 ISINEVGVPMAIAMELTVPEKVTEFNFEKLRKMVLNGPEKYPGANYVIDPEGRRIRLMEN 397
Query: 603 QAVQRESLAKRL 614
E++A++L
Sbjct: 398 NL---ETVAEKL 406
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 55/84 (65%), Gaps = 3/84 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP ++I+ +GVP+ A LT P VT +N LRKMV+NGP YPGAN +
Sbjct: 326 FSARTVISPDPMISINEVGVPMAIAMELTVPEKVTEFNFEKLRKMVLNGPEKYPGANYVI 385
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ +G +R+ + E++A++L
Sbjct: 386 DPEGRRIRLMENNL---ETVAEKL 406
>gi|325090322|gb|EGC43632.1| RNA polymerase I largest subunit [Ajellomyces capsulatus H88]
Length = 1697
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 97/273 (35%), Positives = 148/273 (54%), Gaps = 16/273 (5%)
Query: 351 SSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTT--KELIATDIMFIRSL 408
S N + Q ++ + EV A + L+ E L + + + + D+ FI+++
Sbjct: 321 SRNNPSEQGAQQFMPSPEVYAALRLLFEKEQEVLDLVYDSRPKSNHRPRVTPDMFFIKNI 380
Query: 409 VVPPNNLRPLSMEQMPPV-EHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGI 467
+VPPN RP++ + E +N + I+ C + + ++E+ +E++ +
Sbjct: 381 LVPPNKYRPIAASGSNDIIEAQQNISFTRIMKLCDQINQI-----SRERQGDSTESVTRL 435
Query: 468 RG--DTLNNKLQNSWHELQYNVDLLMDAKLNINK-TTGAHQIDGLKQMLDGKTGMIRQNM 524
R D L +Q LQ V+ L+D N N+ G DG+KQ L+ K G+ R+NM
Sbjct: 436 RDYRDLLQAIVQ-----LQDAVNSLIDRDRNPNQGAAGIQNEDGIKQRLEKKDGLFRKNM 490
Query: 525 MGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYP 584
MGKRVNFA RSVI+PDP + + IGVPL FAK LTYP PVT N L+ VINGP+VYP
Sbjct: 491 MGKRVNFAARSVISPDPNIETNEIGVPLVFAKKLTYPEPVTNHNYWELKNAVINGPDVYP 550
Query: 585 GANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
GA ++NE G VV + +R ++A L++P
Sbjct: 551 GAAAVENEVGQVVSLKFKSQEERLAIANMLLSP 583
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 72/128 (56%), Gaps = 2/128 (1%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNY 181
E + + +++E+K +SV +++ T +SL + +PGGLYD A+G + CTTC N
Sbjct: 13 EGVDFRVLSNEEIKTISVKLIYNTPTLDSLNNPVPGGLYDPALGAWGDH--ICTTCRLNS 70
Query: 182 TKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGY 241
C GH GHIELPV V N FF + LL+ C CH+ + + + +++LL G
Sbjct: 71 WSCNGHAGHIELPVHVYNVTFFDQLFRLLRAQCVYCHRFRMSRADIMSYTCKLRLLQYGL 130
Query: 242 VTQAKDLE 249
V +A ++
Sbjct: 131 VEEAAAID 138
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 63/100 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IGVPL FAK LTYP PVT N L+ VINGP+VYPGA ++
Sbjct: 497 FAARSVISPDPNIETNEIGVPLVFAKKLTYPEPVTNHNYWELKNAVINGPDVYPGAAAVE 556
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI 113
NE G VV + +R ++A L++P + + + +K+
Sbjct: 557 NEVGQVVSLKFKSQEERLAIANMLLSPSNFKMKRSRSKKV 596
>gi|225560308|gb|EEH08590.1| RNA polymerase I largest subunit [Ajellomyces capsulatus G186AR]
Length = 1697
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 97/273 (35%), Positives = 148/273 (54%), Gaps = 16/273 (5%)
Query: 351 SSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTT--KELIATDIMFIRSL 408
S N + Q ++ + EV A + L+ E L + + + + D+ FI+++
Sbjct: 321 SRNNPSEQGAQQFMPSPEVYAALRLLFEKEQEVLDLVYDSRPKSNHRPRVTPDMFFIKNI 380
Query: 409 VVPPNNLRPLSMEQMPPV-EHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGI 467
+VPPN RP++ + E +N + I+ C + + ++E+ +E++ +
Sbjct: 381 LVPPNKYRPIAASGSNDIIEAQQNISFTRIMKLCDQINQI-----SRERQGDSTESVTRL 435
Query: 468 RG--DTLNNKLQNSWHELQYNVDLLMDAKLNINK-TTGAHQIDGLKQMLDGKTGMIRQNM 524
R D L +Q LQ V+ L+D N N+ G DG+KQ L+ K G+ R+NM
Sbjct: 436 RDYRDLLQAIVQ-----LQDAVNSLIDRDRNPNQGAAGIQNEDGIKQRLEKKDGLFRKNM 490
Query: 525 MGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYP 584
MGKRVNFA RSVI+PDP + + IGVPL FAK LTYP PVT N L+ VINGP+VYP
Sbjct: 491 MGKRVNFAARSVISPDPNIETNEIGVPLVFAKKLTYPEPVTNHNYWELKNAVINGPDVYP 550
Query: 585 GANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
GA ++NE G VV + +R ++A L++P
Sbjct: 551 GAAAVENEVGQVVSLKFKSQEERLAIANMLLSP 583
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 72/128 (56%), Gaps = 2/128 (1%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNY 181
E + + +++E+K +SV +++ T +SL + +PGGLYD A+G + CTTC N
Sbjct: 13 EGVDFRVLSNEEIKTISVKLIYNTPTLDSLNNPVPGGLYDPALGAWGDH--ICTTCRLNS 70
Query: 182 TKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGY 241
C GH GHIELPV V N FF + LL+ C CH+ + + + +++LL G
Sbjct: 71 WSCNGHAGHIELPVHVYNVTFFDQLFRLLRAQCVYCHRFRMSRADIMSYTCKLRLLQYGL 130
Query: 242 VTQAKDLE 249
V +A ++
Sbjct: 131 VEEAAAID 138
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 63/100 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IGVPL FAK LTYP PVT N L+ VINGP+VYPGA ++
Sbjct: 497 FAARSVISPDPNIETNEIGVPLVFAKKLTYPEPVTNHNYWELKNAVINGPDVYPGAAAVE 556
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI 113
NE G VV + +R ++A L++P + + + +K+
Sbjct: 557 NEVGQVVSLKFKSQEERLAIANMLLSPSNFKMKRSRSKKV 596
>gi|323450843|gb|EGB06722.1| hypothetical protein AURANDRAFT_65384 [Aureococcus anophagefferens]
Length = 1610
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 99/279 (35%), Positives = 144/279 (51%), Gaps = 33/279 (11%)
Query: 354 QIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDI--------MFI 405
Q KRE ++ SEV LW ++ L L L+ V +L AT F+
Sbjct: 199 QSQEKREL-FLTCSEVMKQLMLLWKHDGLALDALLGV-----DLCATGAGDAGGYRKFFL 252
Query: 406 RSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSV-IMAMKNKEQSDLLSEAL 464
+ VPP RP + EH +N +L G ++ + + + K +S
Sbjct: 253 EVMAVPPPRFRPAQLVGGVMAEHPQNVTLSKVLTLSGEIRGLGVDGDEAKRKS------- 305
Query: 465 KGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNM 524
G NKL W +LQ V+ +D+ + NK Q G+KQ+L+ K G+ R++M
Sbjct: 306 ----GTEKANKLLELWLQLQSEVNNFIDSSKSSNKD----QPPGIKQLLERKEGLFRKHM 357
Query: 525 MGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYP 584
MGKRV+F RSVI+PDP+L IG+P+ FAK L+YP PVTP NV LLR MV+NG +P
Sbjct: 358 MGKRVDFCCRSVISPDPFLGNGEIGLPVRFAKELSYPEPVTPHNVELLRSMVVNGHASWP 417
Query: 585 GANMIQNEDGSVVRISSSQAV---QRESLAKRLITPEGN 620
GAN ++ + G R+ S+ +R +LAK+L+T G
Sbjct: 418 GANWVELKGGGRSRVDLSRITSVKKRAALAKQLLTTPGQ 456
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 62/94 (65%), Gaps = 3/94 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP+L IG+P+ FAK L+YP PVTP NV LLR MV+NG +PGAN ++
Sbjct: 364 FCCRSVISPDPFLGNGEIGLPVRFAKELSYPEPVTPHNVELLRSMVVNGHASWPGANWVE 423
Query: 74 NEDGSVVRISSSQAV---QRESLAKRLITPEDQQ 104
+ G R+ S+ +R +LAK+L+T Q+
Sbjct: 424 LKGGGRSRVDLSRITSVKKRAALAKQLLTTPGQR 457
>gi|240278768|gb|EER42274.1| DNA-directed RNA polymerase I [Ajellomyces capsulatus H143]
Length = 1676
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 97/273 (35%), Positives = 148/273 (54%), Gaps = 16/273 (5%)
Query: 351 SSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTT--KELIATDIMFIRSL 408
S N + Q ++ + EV A + L+ E L + + + + D+ FI+++
Sbjct: 321 SRNNPSEQGAQQFMPSPEVYAALRLLFEKEQEVLDLVYDSRPKSNHRPRVTPDMFFIKNI 380
Query: 409 VVPPNNLRPLSMEQMPPV-EHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGI 467
+VPPN RP++ + E +N + I+ C + + ++E+ +E++ +
Sbjct: 381 LVPPNKYRPIAASGSNDIIEAQQNISFTRIMKLCDQINQI-----SRERQGDSTESVTRL 435
Query: 468 RG--DTLNNKLQNSWHELQYNVDLLMDAKLNINK-TTGAHQIDGLKQMLDGKTGMIRQNM 524
R D L +Q LQ V+ L+D N N+ G DG+KQ L+ K G+ R+NM
Sbjct: 436 RDYRDLLQAIVQ-----LQDAVNSLIDRDRNPNQGAAGIQNEDGIKQRLEKKDGLFRKNM 490
Query: 525 MGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYP 584
MGKRVNFA RSVI+PDP + + IGVPL FAK LTYP PVT N L+ VINGP+VYP
Sbjct: 491 MGKRVNFAARSVISPDPNIETNEIGVPLVFAKKLTYPEPVTNHNYWELKNAVINGPDVYP 550
Query: 585 GANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
GA ++NE G VV + +R ++A L++P
Sbjct: 551 GAAAVENEVGQVVSLKFKSQEERLAIANMLLSP 583
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 72/128 (56%), Gaps = 2/128 (1%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNY 181
E + + +++E+K +SV +++ T +SL + +PGGLYD A+G + CTTC N
Sbjct: 13 EGVDFRVLSNEEIKTISVKLIYNTPTLDSLNNPVPGGLYDPALGAWGDH--ICTTCRLNS 70
Query: 182 TKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGY 241
C GH GHIELPV V N FF + LL+ C CH+ + + + +++LL G
Sbjct: 71 WSCNGHAGHIELPVHVYNVTFFDQLFRLLRAQCVYCHRFRMSRADIMSYTCKLRLLQYGL 130
Query: 242 VTQAKDLE 249
V +A ++
Sbjct: 131 VEEAAAID 138
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 63/100 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IGVPL FAK LTYP PVT N L+ VINGP+VYPGA ++
Sbjct: 497 FAARSVISPDPNIETNEIGVPLVFAKKLTYPEPVTNHNYWELKNAVINGPDVYPGAAAVE 556
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI 113
NE G VV + +R ++A L++P + + + +K+
Sbjct: 557 NEVGQVVSLKFKSQEERLAIANMLLSPSNFKMKRSRSKKV 596
>gi|57641017|ref|YP_183495.1| DNA-directed RNA polymerase subunit A' [Thermococcus kodakarensis
KOD1]
gi|57159341|dbj|BAD85271.1| DNA-directed RNA polymerase, subunit A' [Thermococcus kodakarensis
KOD1]
Length = 906
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 130/493 (26%), Positives = 218/493 (44%), Gaps = 115/493 (23%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHI 191
QE++++S ++ P T++ G+ I GGL D +G I + G C TCG +C GH GHI
Sbjct: 19 QEIRKMSAAEITVPDTYDDDGYPIEGGLMDKRLGVI-DPGLRCETCGARAGECPGHFGHI 77
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEET 251
EL PVI+ F + + +L+ +C C +I
Sbjct: 78 ELARPVIHVGFAKTIHRVLESTCRECGRI------------------------------- 106
Query: 252 LFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGG-EELRSAFVAQVLSRHVKR 310
+L D ++ + K + D KG ++L + R V
Sbjct: 107 ---------------KLTDEEIEEYM---QKFEVMGDRKGAVDKLIKEIHKKAKERMV-- 146
Query: 311 KCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVE 370
C C P I +++ I + D++ N+ +++ M SEV
Sbjct: 147 -CPHCGAPQFPIKFERPTIYWELRKDEEG---------NEYKHRM---------MPSEVR 187
Query: 371 ADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRP-LSMEQMPPVEHS 429
+K+ + +P+L E + M + L VPP +RP +++E E
Sbjct: 188 DRLEKIPDKD-------LPLLGLHPEKSRPEWMVLTVLPVPPVTMRPSITLESGIRAE-- 238
Query: 430 RNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDL 489
+ L ++ I+ + N+ +S++ + A + I +++ W LQY+V
Sbjct: 239 -DDLTHKLV--------DIIRINNRLKSNIEAGAPQLI--------IEDLWDLLQYHVTT 281
Query: 490 LMDAKLNINKTTG--------AHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDP 541
++ N+T+G + L Q L GK G R N+ GKRVNF+ R+VI+PDP
Sbjct: 282 YIN-----NETSGVPPAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKRVNFSARTVISPDP 336
Query: 542 YLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISS 601
++I+ +GVPL A LT P VT +N L++ V+NGP YPGAN + + +G +R+
Sbjct: 337 MISINEVGVPLAVAMELTVPEKVTEFNYEKLKQRVLNGPEKYPGANYVIDPEGRRIRLME 396
Query: 602 SQAVQRESLAKRL 614
S RE +A++L
Sbjct: 397 S---NRELIAEKL 406
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 54/84 (64%), Gaps = 3/84 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP ++I+ +GVPL A LT P VT +N L++ V+NGP YPGAN +
Sbjct: 326 FSARTVISPDPMISINEVGVPLAVAMELTVPEKVTEFNYEKLKQRVLNGPEKYPGANYVI 385
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ +G +R+ S RE +A++L
Sbjct: 386 DPEGRRIRLMES---NRELIAEKL 406
>gi|119495150|ref|XP_001264366.1| DNA-directed RNA polymerase I subunit (Rpa190), putative
[Neosartorya fischeri NRRL 181]
gi|119412528|gb|EAW22469.1| DNA-directed RNA polymerase I subunit (Rpa190), putative
[Neosartorya fischeri NRRL 181]
Length = 1681
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 94/261 (36%), Positives = 146/261 (55%), Gaps = 17/261 (6%)
Query: 363 YVMASEVEADFKKLWTNEHLFLKCLIPV--LDTTKELIATDIMFIRSLVVPPNNLRPLSM 420
Y+ + EV A L+ E L + L + ++ D+ FI++++VPPN RP +
Sbjct: 324 YMPSPEVHAAMVLLFEKEKEILSLIYNSRPLPKKEAKVSPDMFFIKNILVPPNKYRP-AA 382
Query: 421 EQMPP--VEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRG--DTLNNKL 476
Q P +E +N + IL +C + + +KE+ + ++++ +R D L+ +
Sbjct: 383 PQGPGEIMEAQQNTPFTHILKNCDIINQI-----SKERQNAGADSVTRMRDYRDLLHAIV 437
Query: 477 QNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSV 536
Q LQ V+ L+D + + +G+KQ+L+ K G+ R+NMMGKRVNFA RSV
Sbjct: 438 Q-----LQDTVNGLIDKERGASGPAAGQAANGIKQILEKKEGLFRKNMMGKRVNFAARSV 492
Query: 537 ITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSV 596
I+PDP + + IGVPL FAK LTYP PVT N +++ VINGP+ YPGA I+NE G V
Sbjct: 493 ISPDPNIETNEIGVPLVFAKKLTYPEPVTNHNFWEMKQAVINGPDKYPGATAIENELGQV 552
Query: 597 VRISSSQAVQRESLAKRLITP 617
+ +R +LA +L+ P
Sbjct: 553 TNLKFKSLDERTALANQLLAP 573
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 71/126 (56%), Gaps = 2/126 (1%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
++ Y+D+++K +SV ++ + T +S + +PGGLYD A+G + CTTC N
Sbjct: 15 IEFGVYSDEDIKSISVKRIHNTPTLDSFNNPVPGGLYDPALGAWGDH--VCTTCRQNSWS 72
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVT 243
C GH GHIELPV V N FF + LL+ C CH+ + ++ +++LL G V
Sbjct: 73 CTGHPGHIELPVRVYNVTFFDQLYRLLRAQCVYCHRFQMSRVQINAYVCKLRLLQYGLVD 132
Query: 244 QAKDLE 249
+ + +E
Sbjct: 133 EVEAIE 138
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 62/100 (62%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IGVPL FAK LTYP PVT N +++ VINGP+ YPGA I+
Sbjct: 487 FAARSVISPDPNIETNEIGVPLVFAKKLTYPEPVTNHNFWEMKQAVINGPDKYPGATAIE 546
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI 113
NE G V + +R +LA +L+ P + + + +K+
Sbjct: 547 NELGQVTNLKFKSLDERTALANQLLAPSNWRMKGARNKKV 586
>gi|328771968|gb|EGF82007.1| hypothetical protein BATDEDRAFT_18926 [Batrachochytrium
dendrobatidis JAM81]
Length = 1709
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 94/276 (34%), Positives = 153/276 (55%), Gaps = 20/276 (7%)
Query: 353 NQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKE-LIATDIMFIRSLV-V 410
+Q I + + ++ +V+A + LW E + L L + K +++ +MF +V V
Sbjct: 308 SQAIDSQREIFLTPLQVKAHIELLWKRETVVLDLLFGNSSSKKSPRVSSPLMFFLDVVSV 367
Query: 411 PPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGD 470
PN RP+S E+ +N +IL + S I ++ +E++ ALK I D
Sbjct: 368 TPNRFRPISKMGDSQYENPQNIFLTAILKANVS----IQELQRQEEA-----ALKVIADD 418
Query: 471 TLNNKLQ---------NSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIR 521
+LQ ++W LQ +V+ L+D+ +G G++Q+L+ K G+ R
Sbjct: 419 PKLYQLQKAEFLRRIIDAWMILQNSVNYLLDSSKCPLSVSGKIAPPGIRQLLEKKEGLFR 478
Query: 522 QNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPN 581
++MMGKRVN A RSVI+PDPY+ + IG+P FA LTYP PVT N+ +R+ V+NGP
Sbjct: 479 KHMMGKRVNHAARSVISPDPYIETNEIGIPPVFASKLTYPEPVTHHNIKEMRRCVVNGPL 538
Query: 582 VYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
+PGA ++NEDG+++ +SS R ++A +L+TP
Sbjct: 539 KWPGATHVENEDGTLISLSSFDDAGRTAIANQLLTP 574
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 80/129 (62%), Gaps = 1/129 (0%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
+ +Y+ Q++++LSV ++ +PI F++L H P GLYD A+GP S C+TC ++
Sbjct: 14 VHFSFYSPQDLRKLSVKQITNPIIFDNLDHPTPQGLYDSALGP-SGIDSTCSTCSLGFSN 72
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVT 243
C GH GHIEL VPV N++ F+ + LL+ +C+ CH + + F+ ++KL+ AG +
Sbjct: 73 CPGHFGHIELSVPVYNSVNFKLLYKLLQSTCYYCHHLRTSRSVIHSFVAKLKLIHAGLIV 132
Query: 244 QAKDLEETL 252
+A +L+
Sbjct: 133 EAAELDSAF 141
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 62/92 (67%), Gaps = 4/92 (4%)
Query: 9 NHAHVFPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPG 68
NHA RSVI+PDPY+ + IG+P FA LTYP PVT N+ +R+ V+NGP +PG
Sbjct: 487 NHAA----RSVISPDPYIETNEIGIPPVFASKLTYPEPVTHHNIKEMRRCVVNGPLKWPG 542
Query: 69 ANMIQNEDGSVVRISSSQAVQRESLAKRLITP 100
A ++NEDG+++ +SS R ++A +L+TP
Sbjct: 543 ATHVENEDGTLISLSSFDDAGRTAIANQLLTP 574
>gi|169763190|ref|XP_001727495.1| DNA-directed RNA polymerase i [Aspergillus oryzae RIB40]
gi|238489071|ref|XP_002375773.1| DNA-directed RNA polymerase I subunit (Rpa190), putative
[Aspergillus flavus NRRL3357]
gi|83770523|dbj|BAE60656.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220698161|gb|EED54501.1| DNA-directed RNA polymerase I subunit (Rpa190), putative
[Aspergillus flavus NRRL3357]
gi|391869753|gb|EIT78948.1| RNA polymerase I, large subunit [Aspergillus oryzae 3.042]
Length = 1673
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 98/265 (36%), Positives = 148/265 (55%), Gaps = 17/265 (6%)
Query: 360 EQGYVMAS-EVEADFKKLWTNEHLFLKCLIPVLDTTKELIATD--IMFIRSLVVPPNNLR 416
+ G M S EV A L+ E L + +K+ D + FI++L+VPPN R
Sbjct: 315 DGGQFMPSPEVHAAISLLFVKEEEILNLVYTSRPMSKKESRVDAGMFFIKNLLVPPNKYR 374
Query: 417 PLSMEQMPPV-EHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRG--DTLN 473
P++ + V E +N ++ IL +C + + +KE+ + S++ +R D L+
Sbjct: 375 PVASQGAGAVVEAQQNTVFTQILKNCDIINQI-----SKERQNGGSDSAMRVRDYRDLLH 429
Query: 474 NKLQNSWHELQYNVDLLMDA-KLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFA 532
+Q LQ V+ L+D + ++ A +G+KQ+L+ K G+ R+NMMGKRVNFA
Sbjct: 430 AIVQ-----LQDTVNGLIDRDRSGLSGPAAASAPNGIKQILEKKEGLFRKNMMGKRVNFA 484
Query: 533 GRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
RSVI+PDP + + IGVPL FAK LTYP PVT N +++ VINGP+ YPGA I+NE
Sbjct: 485 ARSVISPDPNIETNEIGVPLVFAKKLTYPEPVTNHNFWEMKQAVINGPDKYPGAAAIENE 544
Query: 593 DGSVVRISSSQAVQRESLAKRLITP 617
G V + +R +LA +L+ P
Sbjct: 545 FGQVTNLKFKSLDERTALANQLLAP 569
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 67/126 (53%), Gaps = 2/126 (1%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
+ Y D+++K SV ++ + T +S + +PGGLYD AMG + CTTC +
Sbjct: 15 IDFSVYNDEDIKATSVKRIHNTPTLDSFNNPVPGGLYDPAMGAWGDH--VCTTCRMSSWS 72
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVT 243
C GH GHIELPV V N F + LL+ C CH++ + T + +++LL G V
Sbjct: 73 CTGHPGHIELPVHVYNVTHFDQMYRLLRAQCVYCHRLQMSRTQVNAYTCKLRLLQYGLVD 132
Query: 244 QAKDLE 249
+ LE
Sbjct: 133 EVAALE 138
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 62/100 (62%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IGVPL FAK LTYP PVT N +++ VINGP+ YPGA I+
Sbjct: 483 FAARSVISPDPNIETNEIGVPLVFAKKLTYPEPVTNHNFWEMKQAVINGPDKYPGAAAIE 542
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI 113
NE G V + +R +LA +L+ P + + + +K+
Sbjct: 543 NEFGQVTNLKFKSLDERTALANQLLAPSNWRMKGSRNKKV 582
>gi|145240347|ref|XP_001392820.1| DNA-directed RNA polymerase i [Aspergillus niger CBS 513.88]
gi|134077337|emb|CAK39952.1| unnamed protein product [Aspergillus niger]
Length = 1680
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 154/273 (56%), Gaps = 15/273 (5%)
Query: 350 KSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPV--LDTTKELIATDIMFIRS 407
+S Q + + +Q ++ + EV A L+ E L + L + ++ D+ FI++
Sbjct: 312 ESRKQTVGETQQ-FMPSPEVHAAMTLLFEKEQEILSLVYNSRPLPKKESQVSADMFFIKN 370
Query: 408 LVVPPNNLRPLSMEQMPP--VEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALK 465
++VPPN RP + Q P +E +N+ + +IL +C + + +KE+ +++
Sbjct: 371 ILVPPNKFRP-AAPQGPGEIMEAQQNQSFTAILKNCDIINQI-----SKERQSAGADSTT 424
Query: 466 GIRGDTLNNKLQNSWHELQYNVDLLMDA-KLNINKTTGAHQIDGLKQMLDGKTGMIRQNM 524
+R L +S LQ V++L+D + N++ A G+KQ L+ K G+ R+NM
Sbjct: 425 RVRD---YRDLLHSIVTLQDTVNMLIDRDRGNLSGPAAAAAPMGIKQYLEKKEGLFRKNM 481
Query: 525 MGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYP 584
MGKRVNFA RSVI+PDP + + IGVP+ FAK LTYP PVT N +++ VINGP+ YP
Sbjct: 482 MGKRVNFAARSVISPDPNIETNEIGVPMVFAKKLTYPEPVTNHNFWEMKQAVINGPDKYP 541
Query: 585 GANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
GA+ I+NE G V + +R +LA +L+ P
Sbjct: 542 GASAIENEFGQVTNLRFKSLDERTALANQLLAP 574
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 63/100 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IGVP+ FAK LTYP PVT N +++ VINGP+ YPGA+ I+
Sbjct: 488 FAARSVISPDPNIETNEIGVPMVFAKKLTYPEPVTNHNFWEMKQAVINGPDKYPGASAIE 547
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI 113
NE G V + +R +LA +L+ P + + + +K+
Sbjct: 548 NEFGQVTNLRFKSLDERTALANQLLAPSNWRMKGSRNKKV 587
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
++ Y D+++K +SV ++ + T +S + +PGGLYD AMG + CTTC
Sbjct: 15 IEFGVYNDEDIKAISVKRIHNTPTLDSFNNPVPGGLYDPAMGAWGDH--VCTTCRQTSWS 72
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVT 243
C GH GHIELPV V N F + LLK C CH+ + T+ + +++LL G V
Sbjct: 73 CTGHPGHIELPVHVYNVTHFDQLYRLLKGQCVYCHRFQMSRTNINSYSCKLRLLHYGLVD 132
Query: 244 Q 244
+
Sbjct: 133 E 133
>gi|350629866|gb|EHA18239.1| DNA-directed RNA polymerase [Aspergillus niger ATCC 1015]
Length = 1684
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 154/273 (56%), Gaps = 15/273 (5%)
Query: 350 KSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPV--LDTTKELIATDIMFIRS 407
+S Q + + +Q ++ + EV A L+ E L + L + ++ D+ FI++
Sbjct: 316 ESRKQTVGETQQ-FMPSPEVHAAMTLLFEKEQEILSLVYNSRPLPKKESQVSADMFFIKN 374
Query: 408 LVVPPNNLRPLSMEQMPP--VEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALK 465
++VPPN RP + Q P +E +N+ + +IL +C + + +KE+ +++
Sbjct: 375 ILVPPNKFRP-AAPQGPGEIMEAQQNQSFTAILKNCDIINQI-----SKERQSAGADSTT 428
Query: 466 GIRGDTLNNKLQNSWHELQYNVDLLMDA-KLNINKTTGAHQIDGLKQMLDGKTGMIRQNM 524
+R L +S LQ V++L+D + N++ A G+KQ L+ K G+ R+NM
Sbjct: 429 RVRD---YRDLLHSIVTLQDTVNMLIDRDRGNLSGPAAAAAPMGIKQYLEKKEGLFRKNM 485
Query: 525 MGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYP 584
MGKRVNFA RSVI+PDP + + IGVP+ FAK LTYP PVT N +++ VINGP+ YP
Sbjct: 486 MGKRVNFAARSVISPDPNIETNEIGVPMVFAKKLTYPEPVTNHNFWEMKQAVINGPDKYP 545
Query: 585 GANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
GA+ I+NE G V + +R +LA +L+ P
Sbjct: 546 GASAIENEFGQVTNLRFKSLDERTALANQLLAP 578
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 63/100 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IGVP+ FAK LTYP PVT N +++ VINGP+ YPGA+ I+
Sbjct: 492 FAARSVISPDPNIETNEIGVPMVFAKKLTYPEPVTNHNFWEMKQAVINGPDKYPGASAIE 551
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI 113
NE G V + +R +LA +L+ P + + + +K+
Sbjct: 552 NEFGQVTNLRFKSLDERTALANQLLAPSNWRMKGSRNKKV 591
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 66/123 (53%), Gaps = 2/123 (1%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISER--GDPCTTCGNNY 181
++ Y D+++K +SV ++ + T +S + +PGGLYD AMG + CTTC
Sbjct: 15 IEFGVYNDEDIKAISVKRIHNTPTLDSFNNPVPGGLYDPAMGAWGDHLTVSSCTTCRQTS 74
Query: 182 TKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGY 241
C GH GHIELPV V N F + LLK C CH+ + T+ + +++LL G
Sbjct: 75 WSCTGHPGHIELPVHVYNVTHFDQLYRLLKGQCVYCHRFQMSRTNINSYSCKLRLLHYGL 134
Query: 242 VTQ 244
V +
Sbjct: 135 VDE 137
>gi|390960610|ref|YP_006424444.1| DNA-directed RNA polymerase subunit A' [Thermococcus sp. CL1]
gi|390518918|gb|AFL94650.1| DNA-directed RNA polymerase subunit A' [Thermococcus sp. CL1]
Length = 905
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 127/493 (25%), Positives = 221/493 (44%), Gaps = 115/493 (23%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHI 191
QE++++S ++ P T++ G+ I GGL D +G + + G C TCG +C GH GH+
Sbjct: 19 QEIRKMSAAEITVPDTYDDDGYPIEGGLMDKRLG-VVDPGLRCETCGARAGECPGHFGHV 77
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEET 251
EL P+I+ F + + +L+ +C C +IKL D +++EE
Sbjct: 78 ELARPIIHVGFAKTIHRVLESTCREC--------------GRIKLTD-------EEIEEY 116
Query: 252 LFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRK 311
+ H ++ K D + ++ + +R
Sbjct: 117 M-------------------HKFEVMGDRKKAKD------------RLIKEIHKKAKERM 145
Query: 312 -CIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVE 370
C C P I +++ I + D++ N+ +++ M SEV
Sbjct: 146 VCPHCGAPQFPIKFERPTIYWELRKDEEG---------NEYRHRM---------MPSEVR 187
Query: 371 ADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRP-LSMEQMPPVEHS 429
+K+ + +P+L E + M + L VPP +RP +++E E
Sbjct: 188 DRLEKIPDKD-------LPLLGLHPEKARPEWMVLTVLPVPPVTMRPSITLESGIRAE-- 238
Query: 430 RNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDL 489
+ L ++ I+ + N+ +S++ + A + I +++ W LQY+V
Sbjct: 239 -DDLTHKLVD--------IIRINNRLKSNIEAGAPQLI--------IEDLWDLLQYHVTT 281
Query: 490 LMDAKLNINKTTG--------AHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDP 541
++ N+T+G + L Q L GK G R N+ GKRVNF+ R+VI+PDP
Sbjct: 282 YIN-----NETSGIPPAKHKSGRPLKTLSQRLKGKEGRFRGNLSGKRVNFSARTVISPDP 336
Query: 542 YLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISS 601
++I+ +GVP+ A LT P VT +N L+KMV+NGP YPGAN + + +G +R+
Sbjct: 337 MISINEVGVPIAVAMELTVPEKVTEFNFEKLKKMVLNGPEKYPGANYVIDPEGRRIRLME 396
Query: 602 SQAVQRESLAKRL 614
+ E +A+RL
Sbjct: 397 NNL---EIIAERL 406
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 54/84 (64%), Gaps = 3/84 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP ++I+ +GVP+ A LT P VT +N L+KMV+NGP YPGAN +
Sbjct: 326 FSARTVISPDPMISINEVGVPIAVAMELTVPEKVTEFNFEKLKKMVLNGPEKYPGANYVI 385
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ +G +R+ + E +A+RL
Sbjct: 386 DPEGRRIRLMENNL---EIIAERL 406
>gi|358370847|dbj|GAA87457.1| DNA-directed RNA polymerase I subunit [Aspergillus kawachii IFO
4308]
Length = 1796
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 94/262 (35%), Positives = 148/262 (56%), Gaps = 14/262 (5%)
Query: 361 QGYVMASEVEADFKKLWTNEHLFLKCLIPV--LDTTKELIATDIMFIRSLVVPPNNLRPL 418
Q ++ + EV A L+ E L + L + ++ D+ FI++++VPPN RP
Sbjct: 438 QQFMPSPEVHAAMTLLFEKEQEILSLVYNSRPLPKKESQVSADMFFIKNILVPPNKFRP- 496
Query: 419 SMEQMPP--VEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKL 476
+ Q P +E +N+ + +IL +C + + +KE+ +++ +R L
Sbjct: 497 AAPQGPGQIMEAQQNQSFTAILKNCDIINQI-----SKERQSAGADSTTRVRD---YRDL 548
Query: 477 QNSWHELQYNVDLLMDA-KLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRS 535
+S LQ V++L+D + N++ A G+KQ L+ K G+ R+NMMGKRVNFA RS
Sbjct: 549 LHSIVTLQDTVNMLIDRDRGNLSGPAAAAAPMGIKQYLEKKEGLFRKNMMGKRVNFAARS 608
Query: 536 VITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGS 595
VI+PDP + + IGVP+ FAK LTYP PVT N +++ VINGP+ YPGA+ I+NE G
Sbjct: 609 VISPDPNIETNEIGVPMVFAKKLTYPEPVTNHNFWEMKQAVINGPDKYPGASAIENEFGQ 668
Query: 596 VVRISSSQAVQRESLAKRLITP 617
V + +R +LA +L+ P
Sbjct: 669 VTNLRFKSLDERTALANQLLAP 690
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
++ Y DQ++K +SV ++ + T +S + +PGGLYD AMG + CTTC
Sbjct: 131 IEFGVYNDQDIKAISVKRIHNTPTLDSFNNPVPGGLYDPAMGAWGDH--VCTTCRQTSWS 188
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVT 243
C GH GHIELPV V N F + LLK C CH+ + T+ + +++LL G V
Sbjct: 189 CTGHPGHIELPVHVYNVTHFDQLYRLLKGQCVYCHRFQMSRTNINSYSCKLRLLHYGLVD 248
Query: 244 Q 244
+
Sbjct: 249 E 249
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 63/100 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IGVP+ FAK LTYP PVT N +++ VINGP+ YPGA+ I+
Sbjct: 604 FAARSVISPDPNIETNEIGVPMVFAKKLTYPEPVTNHNFWEMKQAVINGPDKYPGASAIE 663
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI 113
NE G V + +R +LA +L+ P + + + +K+
Sbjct: 664 NEFGQVTNLRFKSLDERTALANQLLAPSNWRMKGSRNKKV 703
>gi|240103982|ref|YP_002960291.1| DNA-directed RNA polymerase subunit A' [Thermococcus gammatolerans
EJ3]
gi|239911536|gb|ACS34427.1| DNA-directed RNA polymerase subunit A' (rpoA1) [Thermococcus
gammatolerans EJ3]
Length = 905
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 125/493 (25%), Positives = 219/493 (44%), Gaps = 115/493 (23%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHI 191
QE++++S ++ P T++ G+ I GGL D +G I G C TCG +C GH GHI
Sbjct: 19 QEIRKMSAAEITVPDTYDDDGYPIEGGLMDKRLGVIDP-GLRCETCGARAGECPGHFGHI 77
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEET 251
EL PV++ F + +Q +L+ +C C +I
Sbjct: 78 ELARPVVHVGFAKTIQRVLESTCRECGRI------------------------------- 106
Query: 252 LFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRK 311
+L D ++ + K I D K + + + ++ + +R
Sbjct: 107 ---------------KLTDEEIEEYM---KKFEVIGDRK---KDKDRLIKEIHKKAKERM 145
Query: 312 -CIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVE 370
C C P I +++ I + D++ N+ +++ M SE+
Sbjct: 146 VCPHCGAPQFPIKFERPTIYYELRRDEEG---------NEYKHRM---------MPSEIR 187
Query: 371 ADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRP-LSMEQMPPVEHS 429
+++ + +P+L E + M + L VPP +RP +++E E
Sbjct: 188 DRLERIPDKD-------LPLLGLHPEKSRPEWMILTVLPVPPVTMRPSITLESGIRAE-- 238
Query: 430 RNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDL 489
+ L ++ I+ + N+ +S++ + A + I +++ W LQY+V
Sbjct: 239 -DDLTHKLVD--------IIRINNRLKSNIEAGAPQLI--------IEDLWDLLQYHVTT 281
Query: 490 LMDAKLNINKTTG--------AHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDP 541
++ N+T+G + L Q L GK G R N+ GKRVNF+ R+VI+PDP
Sbjct: 282 YIN-----NETSGIPPAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKRVNFSARTVISPDP 336
Query: 542 YLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISS 601
++I+ +GVPL A LT P VT +N L++ V+NGP YPGAN + + +G +R+
Sbjct: 337 MISINEVGVPLAIAMELTVPEKVTEFNFEKLKQRVLNGPEKYPGANYVIDPEGRRIRLME 396
Query: 602 SQAVQRESLAKRL 614
+ E++A+RL
Sbjct: 397 NNL---ETIAERL 406
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 54/84 (64%), Gaps = 3/84 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP ++I+ +GVPL A LT P VT +N L++ V+NGP YPGAN +
Sbjct: 326 FSARTVISPDPMISINEVGVPLAIAMELTVPEKVTEFNFEKLKQRVLNGPEKYPGANYVI 385
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ +G +R+ + E++A+RL
Sbjct: 386 DPEGRRIRLMENNL---ETIAERL 406
>gi|223478217|ref|YP_002582841.1| DNA-directed RNA polymerase subunit A' [Thermococcus sp. AM4]
gi|214033443|gb|EEB74270.1| DNA-directed RNA polymerase subunit A' [Thermococcus sp. AM4]
Length = 905
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 126/493 (25%), Positives = 218/493 (44%), Gaps = 115/493 (23%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHI 191
QE++++S ++ P T++ G+ I GGL D +G I G C TCG +C GH GHI
Sbjct: 19 QEIRKMSAAEITVPDTYDDDGYPIEGGLMDKRLGVIDP-GLRCETCGARAGECPGHFGHI 77
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEET 251
EL PV++ F + +Q +L+ +C C +I
Sbjct: 78 ELARPVVHVGFAKTIQRVLESTCRECGRI------------------------------- 106
Query: 252 LFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRK 311
+L D ++ + K I D K + + + ++ + +R
Sbjct: 107 ---------------KLTDEEIEEYM---KKFEVIGDRK---KDKDRLIKEIHKKAKERM 145
Query: 312 -CIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVE 370
C C P I +++ I + D++ N+ +++ M SE+
Sbjct: 146 VCPHCGAPQFPIKFERPTIYYELRRDEEG---------NEYKHRM---------MPSEIR 187
Query: 371 ADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRP-LSMEQMPPVEHS 429
+++ + +P+L E + M + L VPP +RP +++E E
Sbjct: 188 DRLERIPDKD-------LPLLGLHPEKSRPEWMILTVLPVPPVTMRPSITLESGIRAE-- 238
Query: 430 RNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDL 489
+ L ++ I+ + N+ +S++ + A + I +++ W LQY+V
Sbjct: 239 -DDLTHKLVD--------IIRINNRLKSNIEAGAPQLI--------IEDLWDLLQYHVTT 281
Query: 490 LMDAKLNINKTTG--------AHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDP 541
++ N+T+G + L Q L GK G R N+ GKRVNF+ R+VI+PDP
Sbjct: 282 YIN-----NETSGVPPAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKRVNFSARTVISPDP 336
Query: 542 YLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISS 601
++I+ +GVPL A LT P VT +N LR+ V+NGP YPGAN + + +G +R+
Sbjct: 337 MISINEVGVPLAIAMELTVPEKVTEFNFEKLRQRVLNGPEKYPGANYVIDPEGRRIRLME 396
Query: 602 SQAVQRESLAKRL 614
+ E +A+RL
Sbjct: 397 NNL---EIIAERL 406
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 53/84 (63%), Gaps = 3/84 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP ++I+ +GVPL A LT P VT +N LR+ V+NGP YPGAN +
Sbjct: 326 FSARTVISPDPMISINEVGVPLAIAMELTVPEKVTEFNFEKLRQRVLNGPEKYPGANYVI 385
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ +G +R+ + E +A+RL
Sbjct: 386 DPEGRRIRLMENNL---EIIAERL 406
>gi|58266720|ref|XP_570516.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134110900|ref|XP_775914.1| hypothetical protein CNBD3210 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258580|gb|EAL21267.1| hypothetical protein CNBD3210 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226749|gb|AAW43209.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 1727
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 93/282 (32%), Positives = 154/282 (54%), Gaps = 12/282 (4%)
Query: 351 SSNQI--IRKREQGYVMASEVEADFKKLWTNEHLFLKCLI------PVLDTTKELIATDI 402
+S Q+ R R + + +EV A + L+ E + + L + D+
Sbjct: 332 ASGQVKGTRGRHERVMSPAEVRAHLRLLFDKEPRICRLIYGRHGNPAALSSVAPPPLADM 391
Query: 403 MFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNK---EQSDL 459
F+ + V P RP + E+S+N L ++L +C ++ + + N+ E+ +
Sbjct: 392 FFMEVVPVTPTRFRPAARMGDELFENSQNSLLTAVLSTCQRIQKLNQDLINQAKAERGEH 451
Query: 460 LSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLN-INKTTGAHQIDGLKQMLDGKTG 518
+ +A+ +G L + +LQ++V+ +D+ N G G+KQ+L+ K G
Sbjct: 452 VLDAVAKAQGGRTFELLLEALIKLQHDVNSFVDSTKNPAVMRQGKLPPPGVKQLLEKKEG 511
Query: 519 MIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVIN 578
+ R++MMGKRVN+A RSVI+PD + + IG+P FAK LTYP PVT NV LR++VIN
Sbjct: 512 LFRKHMMGKRVNYAARSVISPDINIETNEIGIPPVFAKKLTYPEPVTQQNVAELRQLVIN 571
Query: 579 GPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPEGN 620
GP ++PGA ++QNEDG+ + + QR SLA +L+TP+G+
Sbjct: 572 GPKIHPGAALVQNEDGTQISLDKLTLDQRISLANQLLTPQGS 613
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 71/122 (58%), Gaps = 2/122 (1%)
Query: 133 EVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIE 192
++K +SV KV +PI ++L GGLYD +GP+ R D C TC +Y C GH GHIE
Sbjct: 23 DIKAISVKKVDNPILLDNLNLPTRGGLYDPKLGPMGSR-DLCETCHLSYFACPGHFGHIE 81
Query: 193 LPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETL 252
LP PV + LF LL+ C CH +P ++ +++LLDAG +T++ ++ L
Sbjct: 82 LPTPVYHPLFMNQCYHLLRGVCLYCHHFKMPEIVATSYVARLRLLDAGLLTESHEV-AAL 140
Query: 253 FN 254
F+
Sbjct: 141 FD 142
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 62/91 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PD + + IG+P FAK LTYP PVT NV LR++VINGP ++PGA ++Q
Sbjct: 524 YAARSVISPDINIETNEIGIPPVFAKKLTYPEPVTQQNVAELRQLVINGPKIHPGAALVQ 583
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQ 104
NEDG+ + + QR SLA +L+TP+ +
Sbjct: 584 NEDGTQISLDKLTLDQRISLANQLLTPQGSE 614
>gi|320163230|gb|EFW40129.1| RNA polymerase I largest subunit [Capsaspora owczarzaki ATCC 30864]
Length = 1900
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/232 (39%), Positives = 134/232 (57%), Gaps = 17/232 (7%)
Query: 400 TDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNK-----LYQSI-LYSCGSLKSVIMA--- 450
+ F+ + V P+ RP + Q E+ +N L QS+ L S+K ++A
Sbjct: 470 ANCFFLDVVPVAPSRFRPPARMQDQLFENPQNIYLGNILRQSLQLIEYRSVKERLLAGED 529
Query: 451 MKNKEQSDLLSEAL-----KGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQ 505
+ + +Q D +E K GD + +L N+W LQ V+ LMD+ LN G +
Sbjct: 530 LASIDQDDDQAETTGTGGPKSRAGDIV--RLVNTWIALQGEVNSLMDSTLN-TAVKGGNP 586
Query: 506 IDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVT 565
G++Q L+ K G+ R++MMGKRVN+A RSVI+PD Y++ IG+P+ FAK LTYP PVT
Sbjct: 587 PAGIRQTLEKKEGLFRKHMMGKRVNYAARSVISPDVYIDSAEIGIPMVFAKKLTYPEPVT 646
Query: 566 PWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
PWN LR VINGP V+PGA +QN DG++ +++ +R +LA L+TP
Sbjct: 647 PWNFQELRDAVINGPEVHPGATHVQNADGTLSALANMDQDKRTALANLLLTP 698
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 61/90 (67%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PD Y++ IG+P+ FAK LTYP PVTPWN LR VINGP V+PGA +Q
Sbjct: 612 YAARSVISPDVYIDSAEIGIPMVFAKKLTYPEPVTPWNFQELRDAVINGPEVHPGATHVQ 671
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQ 103
N DG++ +++ +R +LA L+TP Q
Sbjct: 672 NADGTLSALANMDQDKRTALANLLLTPSSQ 701
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 81/158 (51%), Gaps = 5/158 (3%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y +E+++LSV ++ +P ++L H PGGLYD +GPI C TC T C GH+
Sbjct: 33 YDPEEIRRLSVKRITNPTLLDNLNHPTPGGLYDPELGPIDSDAT-CRTCNLASTHCPGHV 91
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKI-NIPATSQLLFINQIKLLDAGYVTQAKD 247
GHIEL +PV N +FF+D+ LL+ C C +P T +L + +++LL+ G + A D
Sbjct: 92 GHIELALPVYNPIFFKDMFQLLRCICLNCGAFKGVPVTLRLAEV-RLQLLEHGLLIPAMD 150
Query: 248 LEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICD 285
E + + P + +L GT D
Sbjct: 151 AE--FLTTPSAQFSPQEYGRLAAEEACRATVSGTAGTD 186
>gi|313231695|emb|CBY08808.1| unnamed protein product [Oikopleura dioica]
Length = 579
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 136/491 (27%), Positives = 218/491 (44%), Gaps = 95/491 (19%)
Query: 121 PEILKLKYYTDQEVKQLSVVKVFS-PITFNSLGHTIP----GGLYDLAMGPISERGDPCT 175
P + K Y+ E+ +LSV ++ + + GL+D A+GP++ RGD CT
Sbjct: 18 PNRISFKTYSKDEIIKLSVKEITECELVYEDRDAGAKTAQLNGLHDPALGPLN-RGDRCT 76
Query: 176 TCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSC-----FLCHKINIPATSQLLF 230
TC + C GH GHI LP PVIN FF+ ++++L SC FLC T + L
Sbjct: 77 TCNSTEKFCPGHCGHINLPSPVINPAFFKTLKMILSASCPDCSHFLC-------TEKALI 129
Query: 231 INQIKL--LDAGYVTQAKDLEETLFNE--ENLRLHPAQLVQLVDSHVQSILAHGTKICDI 286
Q KL L++G + +FNE + H + L+HGTK +
Sbjct: 130 TLQAKLVCLNSGRMD--------IFNEIDRETKDHYGAEKDTEGATADDNLSHGTKSKTL 181
Query: 287 NDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAI--SYQQRKI---------IKSFKI 335
++ + ++++A + + + R +F I I Y ++KI I S K
Sbjct: 182 DELQEFLKVKTAPIDLESRKDMNRSTVFHKRDIVNIFMEYFRKKIKKCPRCLTAIPSIKF 241
Query: 336 DKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTK 395
+ + + ++ +KR + A + +++ TN + K + + T +
Sbjct: 242 ESAG-------GVTRVYLELEKKRAKS---APSADVTLQRVPTN--MLFKQVKKLFQTER 289
Query: 396 ELI-------ATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVI 448
E + FI +++VPPN R ++ + R + Q IL S +K++
Sbjct: 290 ETCDLLFDGTGYEAFFIETVLVPPNCFRRMNKSGQKVLASDRTAMLQKILESSKKIKNLE 349
Query: 449 MAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDG 508
MA LQ V++ +D+ + + TT + G
Sbjct: 350 MA--------------------------------LQQLVNIHIDSNMEKSITT---KNPG 374
Query: 509 LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWN 568
+KQ L+ K G+ RQN+MGKRVNF R+VITPDP + + GV AK LTYP VT +N
Sbjct: 375 IKQKLEKKKGLFRQNIMGKRVNFCARTVITPDPNIATNEFGVSDFVAKKLTYPERVTQYN 434
Query: 569 VTLLRKMVING 579
LR+ VING
Sbjct: 435 YKELRQAVING 445
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 30/49 (61%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVING 62
F R+VITPDP + + GV AK LTYP VT +N LR+ VING
Sbjct: 397 FCARTVITPDPNIATNEFGVSDFVAKKLTYPERVTQYNYKELRQAVING 445
>gi|212223364|ref|YP_002306600.1| DNA-directed RNA polymerase subunit A' [Thermococcus onnurineus
NA1]
gi|212008321|gb|ACJ15703.1| Subunit A' of DNA-dependent RNA polymerase [Thermococcus onnurineus
NA1]
Length = 905
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 121/478 (25%), Positives = 213/478 (44%), Gaps = 112/478 (23%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHI 191
QE++++S ++ P T++ G+ I GGL D +G I + G C TCG C GH GH+
Sbjct: 19 QEIRKMSAAEITVPDTYDDDGYPIEGGLMDKRLGVI-DPGLRCETCGARAGDCPGHFGHV 77
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEET 251
EL P+I+ F + + +L+ +C C +I
Sbjct: 78 ELARPIIHVGFAKTIHRVLESTCRECGRIK------------------------------ 107
Query: 252 LFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRK 311
L +EE +D +++ G + ++ + + ++ + +R
Sbjct: 108 LTDEE------------IDEYMKKFEVMGDR----------KKAKDRLIKEIHKKAKERM 145
Query: 312 -CIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVE 370
C C P I +++ I + D++ N+ +++ M SEV
Sbjct: 146 VCPHCGAPQFPIKFERPTIYWELRRDEEG---------NEYRHRM---------MPSEVR 187
Query: 371 ADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRP-LSMEQMPPVEHS 429
+K+ + +P+L E + M + L VPP +RP +++E E
Sbjct: 188 DRLEKIPDKD-------LPLLGLHPEKARPEWMVLTVLPVPPVTMRPSITLESGIRAE-- 238
Query: 430 RNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDL 489
+ L ++ I+ + N+ +S++ + A + I +++ W LQY+V
Sbjct: 239 -DDLTHKLVD--------IIRINNRLKSNIEAGAPQLI--------IEDLWDLLQYHVTT 281
Query: 490 LMDAKLNINKTTG--------AHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDP 541
++ N+T+G + L Q L GK G R N+ GKRVNF+ R+VI+PDP
Sbjct: 282 YIN-----NETSGIPPAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKRVNFSARTVISPDP 336
Query: 542 YLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
++I+ +GVP+ A LT P VT +N L+KMV+NGP YPGAN + + +G +R+
Sbjct: 337 MISINEVGVPIAVAMELTVPEKVTEFNYEKLKKMVLNGPEKYPGANYVIDPEGRRIRL 394
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP ++I+ +GVP+ A LT P VT +N L+KMV+NGP YPGAN +
Sbjct: 326 FSARTVISPDPMISINEVGVPIAVAMELTVPEKVTEFNYEKLKKMVLNGPEKYPGANYVI 385
Query: 74 NEDGSVVRI 82
+ +G +R+
Sbjct: 386 DPEGRRIRL 394
>gi|341581877|ref|YP_004762369.1| DNA-directed RNA polymerase subunit A' [Thermococcus sp. 4557]
gi|340809535|gb|AEK72692.1| DNA-directed RNA polymerase subunit A' [Thermococcus sp. 4557]
Length = 905
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 122/478 (25%), Positives = 213/478 (44%), Gaps = 112/478 (23%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHI 191
QE++++S ++ P T++ G+ I GGL D +G + + G C TCG C GH GH+
Sbjct: 19 QEIRKMSAAEITVPDTYDDDGYPIEGGLMDKRLG-VVDPGLRCETCGARAGDCPGHFGHV 77
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEET 251
EL P+++ F + + +L+ +C C +IKL D +++EE
Sbjct: 78 ELARPIVHVGFAKTIHRVLESTCREC--------------GRIKLTD-------EEIEEY 116
Query: 252 LFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRK 311
+ H ++ K D + ++ + +R
Sbjct: 117 M-------------------HKFEVMGDRKKAKD------------RLIKEIHKKAKERM 145
Query: 312 -CIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVE 370
C C P I +++ I + D++ N+ +++ M SEV
Sbjct: 146 VCPHCGAPQFPIKFERPTIYWELRKDEEG---------NEYRHRM---------MPSEVR 187
Query: 371 ADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRP-LSMEQMPPVEHS 429
+K+ + +P+L E + M + L VPP +RP +++E E
Sbjct: 188 DRLEKIPDKD-------LPLLGLHPEKARPEWMILTVLPVPPVTMRPSITLESGIRAE-- 238
Query: 430 RNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDL 489
+ L ++ I+ + N+ +S++ + A + I +++ W LQY+V
Sbjct: 239 -DDLTHKLVD--------IIRINNRLKSNIEAGAPQLI--------IEDLWDLLQYHVTT 281
Query: 490 LMDAKLNINKTTG--------AHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDP 541
++ N+T+G + L Q L GK G R N+ GKRVNF+ R+VI+PDP
Sbjct: 282 YIN-----NETSGIPPAKHKSGRPLKTLSQRLKGKEGRFRGNLSGKRVNFSARTVISPDP 336
Query: 542 YLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
++I+ +GVP+ A LT P VT +N L+KMV+NGP YPGAN + + +G +R+
Sbjct: 337 MISINEVGVPMAVAMELTVPEKVTEFNFEKLKKMVLNGPEKYPGANYVIDPEGRRIRL 394
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP ++I+ +GVP+ A LT P VT +N L+KMV+NGP YPGAN +
Sbjct: 326 FSARTVISPDPMISINEVGVPMAVAMELTVPEKVTEFNFEKLKKMVLNGPEKYPGANYVI 385
Query: 74 NEDGSVVRI 82
+ +G +R+
Sbjct: 386 DPEGRRIRL 394
>gi|298707844|emb|CBJ30250.1| RNA polymerase 1-4 RNA polymerase I large subunit [Ectocarpus
siliculosus]
Length = 1234
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 82/219 (37%), Positives = 125/219 (57%), Gaps = 22/219 (10%)
Query: 402 IMFIRSLVVPPNNLRP-LSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLL 460
+ F+R+L VPP RP ++M M EH +N +L SLK+ ++K K+ + +L
Sbjct: 392 LFFVRALAVPPPRFRPPMNMGDMI-AEHPQNVYLTKVLNLNESLKNA-ASLKGKDLASVL 449
Query: 461 SEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMI 520
+ +W ELQ V+ MD+ + GL+Q+L+ K G+
Sbjct: 450 T-----------------TWVELQTTVNCYMDSSKDPRGLKDTPP--GLRQVLEKKEGLF 490
Query: 521 RQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGP 580
R++MMGKRVN+A RSVI+PDPY+ IG+PL FAK LTYP PV WNV +R++V NG
Sbjct: 491 RKHMMGKRVNYACRSVISPDPYVGTTEIGIPLRFAKELTYPQPVADWNVEAMRQLVENGT 550
Query: 581 NVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPEG 619
+VYPGAN +++ G ++ + ++R +A RL++ G
Sbjct: 551 SVYPGANFVEDSSGRMLHLDRLSDLKRRGVAARLLSSPG 589
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 99/177 (55%), Gaps = 10/177 (5%)
Query: 111 EKIITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISER 170
++ + R V E + + TD ++++LSV ++ SP+TF++L + +PGGLYD +GP+ ++
Sbjct: 4 DRTVIRHAV--EEIGFGFLTDDDIRRLSVKRITSPVTFDTLNNPLPGGLYDPVLGPV-DK 60
Query: 171 GDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLF 230
C TCG + C GH+GHIEL V V + + F + LL+ CF CH + + + +
Sbjct: 61 MMMCETCGQDQKNCPGHMGHIELAVSVYHPILFGALYKLLRAKCFSCHNLRLSKSKTRVA 120
Query: 231 INQIKLLDAGYVTQAKDLEETLFN--EENLRLHPAQLVQLVDSHVQSILAHGTKICD 285
++ L+DAG +A +L+ TL ++ R H ++D + + L TK D
Sbjct: 121 AVKMMLVDAGRAQEALELDATLLGYLKDGARDH-----DVLDGNTEDTLVSATKYRD 172
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 60/91 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDPY+ IG+PL FAK LTYP PV WNV +R++V NG +VYPGAN ++
Sbjct: 501 YACRSVISPDPYVGTTEIGIPLRFAKELTYPQPVADWNVEAMRQLVENGTSVYPGANFVE 560
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQ 104
+ G ++ + ++R +A RL++ Q+
Sbjct: 561 DSSGRMLHLDRLSDLKRRGVAARLLSSPGQK 591
>gi|403353481|gb|EJY76278.1| DNA-directed RNA polymerase [Oxytricha trifallax]
Length = 1815
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 92/271 (33%), Positives = 136/271 (50%), Gaps = 26/271 (9%)
Query: 361 QGYVMASEVEADFKKLWTNEHLFLKCLI----PVLDT---TKELIATDIMFIRSLVVPPN 413
Q + +EV+ +W NE L + PV D + + + F++ L+VPPN
Sbjct: 369 QRLLCQNEVQDHLIHMWRNEKALLDIMFGRFYPVEDGQPLENDSLGPQMFFLKKLLVPPN 428
Query: 414 NLRPLSMEQMPPVE---------HSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEAL 464
RP S H+ + + Q IL + +LK I+ Q
Sbjct: 429 RFRPESQGAFGGAGGGQGDKAYLHAHSAMVQKILVNNLALKDAILHQDQLRQQ------- 481
Query: 465 KGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNM 524
G + +N + W LQ +++ MD+ + KT Q +G++Q+L+ K GM R M
Sbjct: 482 TGSQDTKASNDVTQKWISLQDSINTFMDSSM-AQKTADKEQ-NGIRQLLERKEGMFRMKM 539
Query: 525 MGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYP 584
MGKRVN+ GRSVI+PDPY+ D IGVP+ A+ LT+P V N LRK+V+NGP +P
Sbjct: 540 MGKRVNYGGRSVISPDPYITTDQIGVPIFMARRLTFPESVAEVNAEHLRKLVMNGPKQHP 599
Query: 585 GANMIQNEDGSV-VRISSSQAVQRESLAKRL 614
GANMI++E+ V + S QR LA+ L
Sbjct: 600 GANMIEDEETGVRTNLESMSFDQRRGLAQLL 630
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 71/131 (54%), Gaps = 3/131 (2%)
Query: 126 LKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMG--PISERGDPCTTCGNNYTK 183
+YT+QE+++L+V ++ +P F+ L + GG+YD A+G P R C TCG +
Sbjct: 18 FSFYTEQEIEKLAVKQILNPTAFDHLNNPTNGGIYDKALGVSPFDHRAQ-CVTCGLDCQY 76
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVT 243
C GH+G+IEL P N + LLK C CH+I I ++I ++L+ +G +
Sbjct: 77 CPGHLGYIELTAPCYNPFLINQLYKLLKSKCIKCHRIRIHPKKIDIYIQCLQLIKSGQIV 136
Query: 244 QAKDLEETLFN 254
++ L+ N
Sbjct: 137 GSQVLKNYFLN 147
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDPY+ D IGVP+ A+ LT+P V N LRK+V+NGP +PGANMI+
Sbjct: 546 YGGRSVISPDPYITTDQIGVPIFMARRLTFPESVAEVNAEHLRKLVMNGPKQHPGANMIE 605
Query: 74 NEDGSV-VRISSSQAVQRESLAKRL 97
+E+ V + S QR LA+ L
Sbjct: 606 DEETGVRTNLESMSFDQRRGLAQLL 630
>gi|71998295|ref|NP_001022450.1| Protein RPOA-1, isoform a [Caenorhabditis elegans]
gi|5596656|emb|CAB07687.2| Protein RPOA-1, isoform a [Caenorhabditis elegans]
Length = 1737
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 85/257 (33%), Positives = 136/257 (52%), Gaps = 13/257 (5%)
Query: 366 ASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDI------MFIRSLVVPPNNLRPLS 419
+EV F+ L+ N+ L L P+L EL D+ +F+ ++VPP RP+
Sbjct: 312 GAEVREHFRMLFKNDGKLLLKLFPML--VDELNGEDMICPLDGLFLERILVPPKKFRPIR 369
Query: 420 MEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNS 479
M + E + + +L + ++ ++ + MK + L +RG T+N ++ ++
Sbjct: 370 MFKGAQYEDPQTLNLRKVLEATETISAISLIMKGDTSAQLKELIANRVRGKTINAQMHDA 429
Query: 480 WHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
+ +LQ + + D LN I G+KQ+L+ K G+ R +MMGKRVNFA RSVITP
Sbjct: 430 YLQLQLRANAIFDQDLNKGDRD---SIAGIKQILEKKQGLFRMHMMGKRVNFACRSVITP 486
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
DPYL+ID IG+P FAK LT+ PV +NV ++ ++ GP+ +PGAN G +
Sbjct: 487 DPYLDIDEIGIPDIFAKKLTFTEPVNAFNVNEMKGLLRQGPHQHPGANFFVEPSGKKTML 546
Query: 600 SS--SQAVQRESLAKRL 614
+ +R +AK L
Sbjct: 547 GDKPEEKKRRMQMAKTL 563
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 70/131 (53%), Gaps = 3/131 (2%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
KL+ Y E+ +LSV+K+ TF+ +GH I GGLYD +GP D C TC
Sbjct: 18 FKLRSYFPHEIDKLSVLKITQTKTFDEVGHPIAGGLYDPILGP-DNTFDMCMTCNQYERH 76
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIP--ATSQLLFINQIKLLDAGY 241
C GH+GHI+L VPV N L F+ LLK SC CH++ + + + Q++ + G
Sbjct: 77 CPGHMGHIQLAVPVFNPLLFQFTYNLLKGSCVHCHRLTCKGDGVNARMLLAQLRCFELGV 136
Query: 242 VTQAKDLEETL 252
A DLE L
Sbjct: 137 EHVAFDLESIL 147
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVITPDPYL+ID IG+P FAK LT+ PV +NV ++ ++ GP+ +PGAN
Sbjct: 478 FACRSVITPDPYLDIDEIGIPDIFAKKLTFTEPVNAFNVNEMKGLLRQGPHQHPGANFFV 537
Query: 74 NEDGSVVRISS--SQAVQRESLAKRL 97
G + + +R +AK L
Sbjct: 538 EPSGKKTMLGDKPEEKKRRMQMAKTL 563
>gi|71015094|ref|XP_758775.1| hypothetical protein UM02628.1 [Ustilago maydis 521]
gi|46098565|gb|EAK83798.1| hypothetical protein UM02628.1 [Ustilago maydis 521]
Length = 1795
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 88/241 (36%), Positives = 136/241 (56%), Gaps = 15/241 (6%)
Query: 393 TTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMK 452
+T + D F+ L VPP RP S+ E+S+N+L ++L + S++ I +
Sbjct: 380 STPNGASADSFFVSVLAVPPTRFRPASIMGDMTFENSQNELLTNVLKTTFSIRDQITELT 439
Query: 453 -------------NKEQSDLLSEALKGIRG-DTLNNKLQNSWHELQYNVDLLMDAKLN-I 497
+ ++D + + I+G + K+ NS +LQ +V+ +DA N +
Sbjct: 440 RLVSKKDFPELGPDASEADYRAAEAQLIKGREDTRRKVLNSMMQLQVDVNSFIDASKNPM 499
Query: 498 NKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKT 557
G G+KQ L+ K G+ R++MMGKRVNFA RSVI+PD + + IGVP FA+
Sbjct: 500 PLRQGQLPPPGVKQGLEKKEGLFRKHMMGKRVNFAARSVISPDVNIETNEIGVPPVFARK 559
Query: 558 LTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
LTYP PVT NV L+R++VINGP YPGA I++EDG+ ++ +R +LA +L+TP
Sbjct: 560 LTYPEPVTVHNVQLMRQLVINGPFKYPGAVAIRSEDGTETQLDKLSVEERTALANQLLTP 619
Query: 618 E 618
+
Sbjct: 620 Q 620
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 76/124 (61%), Gaps = 1/124 (0%)
Query: 126 LKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCK 185
+ T ++++++SV ++ +P+ ++ H GGLYD A+GP+ D C+TC N +C
Sbjct: 16 FSFLTAEDIRRISVKQIINPVLLDTTNHPNAGGLYDPALGPMRPN-DICSTCHLNSYQCP 74
Query: 186 GHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQA 245
GH GHIELP PV + LF ++ LL+ +CF CH+ +P I +++LL+ G V A
Sbjct: 75 GHFGHIELPSPVFHPLFMGNMFNLLRGTCFYCHRFRLPLVVLTKVIGRLRLLEYGLVDDA 134
Query: 246 KDLE 249
+++E
Sbjct: 135 ENIE 138
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 62/93 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PD + + IGVP FA+ LTYP PVT NV L+R++VINGP YPGA I+
Sbjct: 533 FAARSVISPDVNIETNEIGVPPVFARKLTYPEPVTVHNVQLMRQLVINGPFKYPGAVAIR 592
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHR 106
+EDG+ ++ +R +LA +L+TP++ +
Sbjct: 593 SEDGTETQLDKLSVEERTALANQLLTPQEHSSK 625
>gi|299747435|ref|XP_002911169.1| RNA polymerase I largest subunit [Coprinopsis cinerea okayama7#130]
gi|298407517|gb|EFI27675.1| RNA polymerase I largest subunit [Coprinopsis cinerea okayama7#130]
Length = 1726
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 92/287 (32%), Positives = 149/287 (51%), Gaps = 16/287 (5%)
Query: 347 SLNKSSNQII---RKREQGYVMASEVEADFKKLWTNEHLFLKCLI-------PVLDTTKE 396
SL +++N + R R + + E A ++L+ NE + + PV
Sbjct: 322 SLPRAANGKVKTSRGRNERVIAPEECRAHLRRLFKNETIMCSLIFGRHGPHAPVNKDQLA 381
Query: 397 LIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQ 456
+ + D+ F+ L V P RP + EH +N+L +L + L+ + + ++ Q
Sbjct: 382 IASADMFFLEVLPVSPTRFRPPAKMGETLFEHPQNELLARVLNTSYKLRDINLDLRTASQ 441
Query: 457 -SDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKT-TGAHQIDGLKQMLD 514
D E + TL ++L + +LQ +V+ MD+ N G G+KQ L+
Sbjct: 442 KGDEFDEVAR----RTLMSQLLDRLIQLQIDVNSFMDSSKNPQVVRQGKLPPAGVKQGLE 497
Query: 515 GKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRK 574
K G+ R++MMGKRVN+A RSVI+PD + IG+P FA+ LT+P PVT N +R+
Sbjct: 498 KKEGLFRKHMMGKRVNYAARSVISPDVNIEPSEIGIPPVFARKLTFPEPVTADNFHEMRQ 557
Query: 575 MVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPEGNY 621
VINGPN YPGA+M++ EDG + QR ++A +L+TP+ ++
Sbjct: 558 RVINGPNNYPGASMVEYEDGRQQSLDKLTVEQRTAIANQLLTPQSDH 604
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 73/127 (57%), Gaps = 1/127 (0%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
+ + T Q+++++SV ++ +P+ + L GGLYD A+GP +R D C TC Y
Sbjct: 14 VSFSFLTAQDIRRISVKQIVNPVLLDDLNRPNIGGLYDPALGP-HDRSDICATCHLTYFT 72
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVT 243
C GH GHIELP PV + LF ++ LL+ C CH+ + T ++ +++LL+ G V
Sbjct: 73 CPGHFGHIELPAPVFHPLFMGNLYNLLRGMCMFCHRFKMSRTQLSKYMAKLRLLEHGLVE 132
Query: 244 QAKDLEE 250
A +++
Sbjct: 133 AAMGVDD 139
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 62/103 (60%), Gaps = 2/103 (1%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PD + IG+P FA+ LT+P PVT N +R+ VINGPN YPGA+M++
Sbjct: 514 YAARSVISPDVNIEPSEIGIPPVFARKLTFPEPVTADNFHEMRQRVINGPNNYPGASMVE 573
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKIITR 116
EDG + QR ++A +L+TP Q A ++ + TR
Sbjct: 574 YEDGRQQSLDKLTVEQRTAIANQLLTP--QSDHATSRKGLFTR 614
>gi|121701207|ref|XP_001268868.1| DNA-directed RNA polymerase I subunit (Rpa190), putative
[Aspergillus clavatus NRRL 1]
gi|119397011|gb|EAW07442.1| DNA-directed RNA polymerase I subunit (Rpa190), putative
[Aspergillus clavatus NRRL 1]
Length = 1734
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/224 (37%), Positives = 134/224 (59%), Gaps = 15/224 (6%)
Query: 398 IATDIMFIRSLVVPPNNLRPLSMEQMPP--VEHSRNKLYQSILYSCGSLKSVIMAMKNKE 455
++ ++ FI++++VPPN RP + Q P +E +N IL +C + + +KE
Sbjct: 414 VSANMFFIKNILVPPNKYRP-AAPQGPGEIMEAQQNTPLTQILKNCDIINQI-----SKE 467
Query: 456 QSDLLSEALKGIRG--DTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQML 513
+ + ++++ +R D L+ +Q LQ V+ L+D++ + + +G+KQ+L
Sbjct: 468 RQNAGADSVTRMRDYRDLLHAIVQ-----LQDTVNSLIDSERGASGASAGQAANGIKQIL 522
Query: 514 DGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLR 573
+ K G+ R+NMMGKRVNFA RSVI+PDP + + IGVPL FAK LTYP PVT N ++
Sbjct: 523 EKKEGLFRKNMMGKRVNFAARSVISPDPNIETNEIGVPLVFAKKLTYPEPVTNHNFWEMK 582
Query: 574 KMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
+ VINGP+ YPGA I+NE G V + +R +LA +L+ P
Sbjct: 583 QAVINGPDKYPGATAIENELGQVTNLKFKSLDERTALANQLLAP 626
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 68/121 (56%), Gaps = 2/121 (1%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+D+++K +SV ++ + T +S + +PGGLYD A+G + C TC N C GH
Sbjct: 73 YSDEDIKGISVKRIHNTPTLDSFNNPVPGGLYDPALGAWGDH--VCATCRQNAWSCTGHP 130
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELPV V N FF + LL+ C CH+ +P ++ +++LL G V + +
Sbjct: 131 GHIELPVHVYNVTFFDQLFRLLRAQCVYCHRFQMPRVQVNAYVCKLRLLQYGLVDEVGVI 190
Query: 249 E 249
E
Sbjct: 191 E 191
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 62/100 (62%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IGVPL FAK LTYP PVT N +++ VINGP+ YPGA I+
Sbjct: 540 FAARSVISPDPNIETNEIGVPLVFAKKLTYPEPVTNHNFWEMKQAVINGPDKYPGATAIE 599
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI 113
NE G V + +R +LA +L+ P + + + +K+
Sbjct: 600 NELGQVTNLKFKSLDERTALANQLLAPSNWRMKGSRNKKV 639
>gi|258563376|ref|XP_002582433.1| hypothetical protein UREG_07206 [Uncinocarpus reesii 1704]
gi|237907940|gb|EEP82341.1| hypothetical protein UREG_07206 [Uncinocarpus reesii 1704]
Length = 1666
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 95/262 (36%), Positives = 138/262 (52%), Gaps = 39/262 (14%)
Query: 361 QGYVMASEVEADFKKLWTNEHLFLKCLIPVL--DTTKELIATDIMFIRSLVVPPNNLRPL 418
Q Y+ +SE+ A + L+ E L + K ++ D+ FI++++VPPN RP
Sbjct: 330 QQYIPSSEIYASIRFLFEKEQEILDLVYDSRPGSAGKSHVSADMFFIKNILVPPNKYRP- 388
Query: 419 SMEQMPP--VEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKL 476
+ Q P +E +N + IL C + +Q + +A RG
Sbjct: 389 AAHQGPGQIMEAQQNTSFTRILKLC-----------DPDQPNQPGKA----RG------- 426
Query: 477 QNSWHELQYNVDLLMDAKLNINK-TTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRS 535
QY L+D N N+ G DG+KQ L+ K G+ R+NMMGKRVNFA RS
Sbjct: 427 -------QY----LIDRDRNPNQGAAGIQNEDGIKQRLEKKDGLFRKNMMGKRVNFAARS 475
Query: 536 VITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGS 595
VI+PDP + + IG+PL FAK LTYP PVT N L++ VINGP++YPGA ++NE G
Sbjct: 476 VISPDPNIETNEIGIPLVFAKKLTYPEPVTNHNYWELKQAVINGPDIYPGAAAVENELGQ 535
Query: 596 VVRISSSQAVQRESLAKRLITP 617
VV + +R ++A L++P
Sbjct: 536 VVNLKFKTVDERIAIANMLLSP 557
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 65/116 (56%), Gaps = 2/116 (1%)
Query: 130 TDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+D ++K +SV ++ + T +S + +PGGLYD A+G + CTTC N C GH G
Sbjct: 21 SDSDIKSISVKRIHNTPTLDSFNNPVPGGLYDPALGAWGDH--VCTTCRLNAWSCAGHPG 78
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQA 245
H+ELPV V N FF + LL+ C CH+ + ++ +++LL G V +A
Sbjct: 79 HVELPVHVYNVTFFDQLFRLLRAQCIYCHRFRLSRVQINAYVCKLRLLQYGLVEEA 134
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 64/100 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IG+PL FAK LTYP PVT N L++ VINGP++YPGA ++
Sbjct: 471 FAARSVISPDPNIETNEIGIPLVFAKKLTYPEPVTNHNYWELKQAVINGPDIYPGAAAVE 530
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI 113
NE G VV + +R ++A L++P + + + +K+
Sbjct: 531 NELGQVVNLKFKTVDERIAIANMLLSPSNWKLKRSRNKKV 570
>gi|115492103|ref|XP_001210679.1| hypothetical protein ATEG_00593 [Aspergillus terreus NIH2624]
gi|114197539|gb|EAU39239.1| hypothetical protein ATEG_00593 [Aspergillus terreus NIH2624]
Length = 1691
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 95/261 (36%), Positives = 147/261 (56%), Gaps = 16/261 (6%)
Query: 363 YVMASEVEADFKKLWTNEHLFLKCLIPV--LDTTKELIATDIMFIRSLVVPPNNLRPLSM 420
Y+ + EV A L+ E L + L + ++ D+ FI+S++VPPN RP ++
Sbjct: 337 YMPSPEVHAAITLLFEKESNILTLVYNSRPLPKKESRVSADMFFIKSILVPPNKYRPAAI 396
Query: 421 EQMPPV-EHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRG--DTLNNKLQ 477
+ + E +N IL +C + + +KE+ + S+++ +R D L+ +Q
Sbjct: 397 QGAGEIMEAQQNTPLTQILKNCDIINQI-----SKERQNGGSDSITRVRDYRDLLHAIVQ 451
Query: 478 NSWHELQYNVDLLMDA-KLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSV 536
LQ V+ L+D + ++ A +G+KQ+L+ K G+ R+NMMGKRVNFA RSV
Sbjct: 452 -----LQDTVNGLIDRDRSGLSGAAVAGAANGIKQILEKKEGLFRKNMMGKRVNFAARSV 506
Query: 537 ITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSV 596
I+PDP + + IGVPL FAK LTYP PVT N +++ VINGP+ YPGA I+NE G V
Sbjct: 507 ISPDPNIETNEIGVPLVFAKKLTYPEPVTNHNFWEMKQAVINGPDKYPGAAAIENELGQV 566
Query: 597 VRISSSQAVQRESLAKRLITP 617
+ +R +LA +L+ P
Sbjct: 567 TNLKFKSLDERTALANQLLAP 587
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 62/100 (62%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + + IGVPL FAK LTYP PVT N +++ VINGP+ YPGA I+
Sbjct: 501 FAARSVISPDPNIETNEIGVPLVFAKKLTYPEPVTNHNFWEMKQAVINGPDKYPGAAAIE 560
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI 113
NE G V + +R +LA +L+ P + + + +K+
Sbjct: 561 NELGQVTNLKFKSLDERTALANQLLAPSNWRMKGSRNKKV 600
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 71/141 (50%), Gaps = 19/141 (13%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISER-------GD--------- 172
YTD++VK +SV ++ + T +S + +PGGLYD A+G + G+
Sbjct: 20 YTDEDVKAISVKRIHNTPTLDSFNNPVPGGLYDPALGAWGDHVALYAIVGEGFQVRTRLL 79
Query: 173 ---PCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLL 229
CTTC N C GH GHIELPV V N F + LL+ C CH+ + T
Sbjct: 80 TSLSCTTCRLNAWSCTGHSGHIELPVHVYNLTHFDQMYRLLRAQCVYCHRFQMSRTQINA 139
Query: 230 FINQIKLLDAGYVTQAKDLEE 250
+ +++LL G V + +L++
Sbjct: 140 YECKLRLLQYGLVDELVELDQ 160
>gi|389746863|gb|EIM88042.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Stereum hirsutum FP-91666 SS1]
Length = 1754
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 90/272 (33%), Positives = 144/272 (52%), Gaps = 11/272 (4%)
Query: 357 RKREQGYVMASEVEADFKKLWTNEHLFLKCL-------IPVLDTTKELIATDIMFIRSLV 409
R R + + SE A ++L+ E L PV + + D+ F+ +
Sbjct: 318 RGRNERIMPPSECRAHLRRLFHKEATMCAMLYGRHGPLAPVNAAGLSMASADMFFMEVVP 377
Query: 410 VPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRG 469
V P RP ++ EHS+N+L +L + L+ V ++K + + EA
Sbjct: 378 VAPTRFRPPAIMNDTIFEHSQNELLGKVLNTTYRLRDVNESLK---VASVKEEAFNEEER 434
Query: 470 DTLNNKLQNSWHELQYNVDLLMDAKLNINKTT-GAHQIDGLKQMLDGKTGMIRQNMMGKR 528
L L + +LQ +V+ +D+ N G G+KQ L+ K G+ R++MMGKR
Sbjct: 435 RRLLGTLLETLVQLQIDVNSFIDSSKNPAPVKQGKLPPQGVKQGLEKKEGLFRKHMMGKR 494
Query: 529 VNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANM 588
VN+A RSVI+PD + + IG+P FA+ LT+P PVT N+ +R++VINGP +YPGA++
Sbjct: 495 VNYAARSVISPDVNIEPNEIGIPPVFARKLTFPEPVTTANIHEMRQLVINGPKIYPGASI 554
Query: 589 IQNEDGSVVRISSSQAVQRESLAKRLITPEGN 620
++ EDGS + QR ++A +L+TP+GN
Sbjct: 555 VEYEDGSQQFLDKLTVEQRTAIANQLLTPQGN 586
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 112/218 (51%), Gaps = 21/218 (9%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
L + T ++++++SV ++ +P+ + L GGLYD A+GP S + D C+TC NY
Sbjct: 14 LSFSFLTTEDIRRISVKQIVNPVLLDDLNRPNLGGLYDPALGP-SSKEDLCSTCHLNYFA 72
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVT 243
C GH GHIELP PV + LF ++ LL+ +C CH+ + + L + +++LL+AG +
Sbjct: 73 CPGHFGHIELPNPVFHPLFMMNMYNLLRATCLFCHRFKMSRPTLLKYQAKLRLLEAGQLE 132
Query: 244 QAKDLEE----TLFNEENLRLH-PAQLVQLVDSHVQSIL------AHGTKICDINDYKGG 292
+ ++E T +E+ + P + V ++ ++ + A G+K + YK
Sbjct: 133 AIQMIDEMNIVTKTDEDAMDDDAPGETVDAYEARLELYIRLTLSRASGSK---RDAYKDS 189
Query: 293 --EELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRK 328
+ R + + L + +KC TP A Y RK
Sbjct: 190 LVFQARKDLIMEFLKAAIVKKC----TPCGAHGYTFRK 223
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 60/88 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PD + + IG+P FA+ LT+P PVT N+ +R++VINGP +YPGA++++
Sbjct: 497 YAARSVISPDVNIEPNEIGIPPVFARKLTFPEPVTTANIHEMRQLVINGPKIYPGASIVE 556
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPE 101
EDGS + QR ++A +L+TP+
Sbjct: 557 YEDGSQQFLDKLTVEQRTAIANQLLTPQ 584
>gi|225441748|ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Vitis
vinifera]
Length = 1740
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 93/292 (31%), Positives = 155/292 (53%), Gaps = 34/292 (11%)
Query: 337 KDNLDQSLDKSLNKSSNQIIRKRE--QGYVMASEVEADFKKLWTNEHLFLKCLIPVLD-- 392
+D + + L++ ++ + I+++ G ++ SEV ++LW NE + +L
Sbjct: 335 QDTVTKRLERKGAQAPIEFIKQKSFFSGPLLPSEVRDIMERLWENEAELCSFISDILQER 394
Query: 393 --TTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMA 450
+ + F+ +++VPP RP S Q+ +EH + L +L + +L +
Sbjct: 395 LGASGNKAGYSMFFLETILVPPIKFRPPSKGQISVMEHPQTVLLGKVLQANIALGNA--H 452
Query: 451 MKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQID--- 507
N E+S ++S W +LQ ++++L D K G Q D
Sbjct: 453 ANNSERSKIISR-----------------WMDLQQSINVLFDGKT----AAGQGQRDTGS 491
Query: 508 GLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPW 567
G+ Q+L+ K G+ RQ MMGKRVNFA RSVI+PDPYL ++ IG+P FA LTYP VTPW
Sbjct: 492 GICQLLEKKEGVFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPW 551
Query: 568 NVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPEG 619
NV LR +INGP ++PGA ++ S V+++ ++ + R S++++L + G
Sbjct: 552 NVVKLRDAIINGPEIHPGATHYVDK-LSTVKLAVNKKM-RISISRKLPSSRG 601
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 76/128 (59%), Gaps = 1/128 (0%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNY 181
E +K ++TD+EV++ S K+ SP+ +S+ +PGGLYD A+G I E PC +CG
Sbjct: 62 EAVKFSFFTDEEVRKYSFKKITSPLMLDSVQRPVPGGLYDPALGSIDEN-TPCQSCGQRS 120
Query: 182 TKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGY 241
C GH GHI+L V N L F + LL+ +CF CH ++ +++Q++L+ G
Sbjct: 121 FYCPGHCGHIDLVSSVYNPLLFNLLHNLLQKTCFFCHHFKTSSSLVQKYVSQLELISKGD 180
Query: 242 VTQAKDLE 249
V AK+L+
Sbjct: 181 VVGAKNLD 188
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 41/56 (73%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGA 69
F RSVI+PDPYL ++ IG+P FA LTYP VTPWNV LR +INGP ++PGA
Sbjct: 515 FACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNVVKLRDAIINGPEIHPGA 570
>gi|443894484|dbj|GAC71832.1| RNA polymerase I, large subunit [Pseudozyma antarctica T-34]
Length = 1797
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 136/241 (56%), Gaps = 15/241 (6%)
Query: 393 TTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMK 452
+T + D FI ++ VPP RP S+ E+S+N+L ++L + +++ I +
Sbjct: 381 STPNGASADSFFITAVAVPPTRFRPASIMGDMTFENSQNELLTNVLKTTFAIRDQITELA 440
Query: 453 -------------NKEQSDLLSEALKGIRG-DTLNNKLQNSWHELQYNVDLLMDAKLN-I 497
+ +SD + I+ + + K+ NS +LQ +V+ +D+ N +
Sbjct: 441 RLTAKKDFPELGPDASESDFRVAETQLIKSREDMRRKVLNSMMQLQVDVNSFIDSSKNPM 500
Query: 498 NKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKT 557
G G+KQ L+ K G+ R++MMGKRVNFA RSVI+PD + + IGVP FA+
Sbjct: 501 PLRQGQLPPPGVKQGLEKKEGLFRKHMMGKRVNFAARSVISPDVNIETNEIGVPPVFARK 560
Query: 558 LTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
LTYP PVT NV L+R++VINGP YPGA I++EDG+ ++ +R +LA +L+TP
Sbjct: 561 LTYPEPVTVHNVQLMRQLVINGPFKYPGAVAIRSEDGTETQLDKLSVEERTALANQLLTP 620
Query: 618 E 618
+
Sbjct: 621 Q 621
Score = 95.5 bits (236), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 73/124 (58%), Gaps = 1/124 (0%)
Query: 126 LKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCK 185
+ T ++++++SV ++ +P+ ++ H GGLYD A+GP+ D C TC N +C
Sbjct: 16 FSFLTAEDIRRISVKQIINPVLLDTTNHPNAGGLYDPALGPMRPH-DICATCHLNSYQCP 74
Query: 186 GHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQA 245
GH GHIELP PV + LF ++ LL+ +CF CH+ I +++LL+ G V A
Sbjct: 75 GHFGHIELPSPVFHPLFMGNMFNLLRGTCFYCHRFRASLPVLTKVIGRLRLLEYGLVDDA 134
Query: 246 KDLE 249
++++
Sbjct: 135 ENID 138
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 64/97 (65%), Gaps = 2/97 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PD + + IGVP FA+ LTYP PVT NV L+R++VINGP YPGA I+
Sbjct: 534 FAARSVISPDVNIETNEIGVPPVFARKLTYPEPVTVHNVQLMRQLVINGPFKYPGAVAIR 593
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMK 110
+EDG+ ++ +R +LA +L+TP Q+H + K
Sbjct: 594 SEDGTETQLDKLSVEERTALANQLLTP--QEHSSKQK 628
>gi|409095098|ref|ZP_11215122.1| DNA-directed RNA polymerase subunit A' [Thermococcus zilligii AN1]
Length = 907
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 120/481 (24%), Positives = 210/481 (43%), Gaps = 112/481 (23%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHI 191
QE++++S ++ P T++ G+ I GGL D +G I G C TCG +C GH GHI
Sbjct: 19 QEIRKMSAAEITVPDTYDEDGYPIEGGLMDKRLGVIDP-GLRCETCGAKAGECPGHFGHI 77
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEET 251
EL PV++ F + + +L+ +C C +I
Sbjct: 78 ELARPVVHVGFAKTILRVLESTCRECGRI------------------------------- 106
Query: 252 LFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRK 311
+L D ++ + K I D K + R + ++ + +R
Sbjct: 107 ---------------KLTDEEIEGYM---KKFEVIGDRK---KARDDLIREIHKKAKERM 145
Query: 312 -CIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVE 370
C C P + +++ + + D++ D R R +M +E+
Sbjct: 146 VCPHCGAPQFPLKFERPTVYWELRKDEEGND--------------YRHR----MMPNEIR 187
Query: 371 ADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRP-LSMEQMPPVEHS 429
+++ + +P+L E + M + L VPP +RP +++E E
Sbjct: 188 DRLERIPDGD-------LPLLGLHPENSRPEWMVLTVLPVPPVTMRPSITLESGIRAE-- 238
Query: 430 RNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDL 489
+ L ++ I+ + N+ +S++ + A + I +++ W LQY+V
Sbjct: 239 -DDLTHKLVD--------IIRINNRLKSNIEAGAPQLI--------IEDLWDLLQYHVTT 281
Query: 490 LMDAKLNINKTTG--------AHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDP 541
++ N+T+G + L Q L GK G R N+ GKRVNF+ R+VI+PDP
Sbjct: 282 YIN-----NETSGVPPAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKRVNFSARTVISPDP 336
Query: 542 YLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISS 601
++I+ +GVP+ A LT P VT +N L++ V+NGP YPGAN + + +G +R+
Sbjct: 337 MISINEVGVPIAIAMELTVPEKVTEFNFEKLKERVLNGPEKYPGANYVIDPEGKRIRLME 396
Query: 602 S 602
S
Sbjct: 397 S 397
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 47/72 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP ++I+ +GVP+ A LT P VT +N L++ V+NGP YPGAN +
Sbjct: 326 FSARTVISPDPMISINEVGVPIAIAMELTVPEKVTEFNFEKLKERVLNGPEKYPGANYVI 385
Query: 74 NEDGSVVRISSS 85
+ +G +R+ S
Sbjct: 386 DPEGKRIRLMES 397
>gi|300121000|emb|CBK21382.2| unnamed protein product [Blastocystis hominis]
Length = 1671
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 92/260 (35%), Positives = 132/260 (50%), Gaps = 52/260 (20%)
Query: 402 IMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSIL--------YSCGSLKSVIMAMKN 453
I F+R+++VPP+ RP EH +N +IL Y ++ +M
Sbjct: 164 IFFVRTILVPPSRFRPPQHLHGEQYEHPQNVYLSNILRDNYNLMQYGAKRVEDRTESMPE 223
Query: 454 K----EQSDLLSEAL--------------------------KGIRGD--------TLNNK 475
+Q D EA+ +G +G+ T +
Sbjct: 224 AGNLDDQPDESKEAMDSKDSKDSKDSKDSKDAKTAKPSRRSRGGKGESKEKPLSYTFEDA 283
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRS 535
L++ W ++Q N + L+D+ + Q G++Q+L+ K G+ R NMMGKRVNFA RS
Sbjct: 284 LKD-WVDMQENYNGLVDSS-----KGHSGQSAGIRQLLEHKEGLFRMNMMGKRVNFAARS 337
Query: 536 VITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGS 595
VI PDPY++ D +GVPL+FAK L YP PVT NV LLR++VING YPGA I+NE G
Sbjct: 338 VIAPDPYIDTDEVGVPLQFAKELCYPEPVTVNNVKLLRQLVINGREKYPGACYIENEGGW 397
Query: 596 VVRISSSQAVQRESLAKRLI 615
+V + QRE+LAK L+
Sbjct: 398 LVDLQYKNRGQREALAKTLL 417
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 59/85 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI PDPY++ D +GVPL+FAK L YP PVT NV LLR++VING YPGA I+
Sbjct: 333 FAARSVIAPDPYIDTDEVGVPLQFAKELCYPEPVTVNNVKLLRQLVINGREKYPGACYIE 392
Query: 74 NEDGSVVRISSSQAVQRESLAKRLI 98
NE G +V + QRE+LAK L+
Sbjct: 393 NEGGWLVDLQYKNRGQREALAKTLL 417
>gi|449549948|gb|EMD40913.1| hypothetical protein CERSUDRAFT_131304 [Ceriporiopsis subvermispora
B]
Length = 1727
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 93/279 (33%), Positives = 142/279 (50%), Gaps = 22/279 (7%)
Query: 357 RKREQGYVMASEVEADFKKLWTNEHLFLKCLI-------PVLDTTKELIATDIMFIRSLV 409
R R + + A E A ++L+TNE + L P+ L + D+ F+ +
Sbjct: 322 RGRNERVMAAEECRAHLRRLFTNESVMCSLLFGRHGPFAPLTRHGLSLASADMFFLDVIP 381
Query: 410 VPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRG 469
V P RP + EH +N+L +L + L+ + L + ++KG
Sbjct: 382 VSPTRFRPPAKMGEMLFEHPQNELLSKVLTTSYRLRDL--------NDSLRAASVKGSGA 433
Query: 470 DT-----LNNKLQNSWHELQYNVDLLMDAKLNINKT-TGAHQIDGLKQMLDGKTGMIRQN 523
D L L ++ LQ +V+ +D+ N G G+KQ L+ K G+ R++
Sbjct: 434 DVAAQRKLMQGLLDTLIHLQDDVNSFIDSSKNPAPVRQGKLPPAGVKQGLEKKEGLFRKH 493
Query: 524 MMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVY 583
MMGKRVN+A RSVI+PD + IG+P FA+ LT+P PVTP+N LR+ VI GP Y
Sbjct: 494 MMGKRVNYAARSVISPDVNIEPSEIGIPPVFARKLTFPEPVTPFNFHELRQYVITGPRGY 553
Query: 584 PGANMIQNEDGSVVRISSSQAVQRESLAKRLITP-EGNY 621
PGA M++ EDG + + QR ++A +L+TP EGN+
Sbjct: 554 PGATMVEYEDGHLQFLDKLTVEQRTAIANQLLTPQEGNH 592
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 105/203 (51%), Gaps = 16/203 (7%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
+ + T ++V+++SV ++ +PI + L GGLYD A+GP S++ D C TC Y
Sbjct: 14 VSFSFLTAEDVRRISVKQIVNPILLDDLNRPNIGGLYDPALGP-SDKQDICATCRLTYYT 72
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVT 243
C GH GHIELP PV + LF ++ LL+ +C CH+ + F+ +++LL+ G++
Sbjct: 73 CPGHFGHIELPAPVFHPLFMNNMYHLLRGACMFCHRFKVSRFVLCKFVAKLRLLEHGFLI 132
Query: 244 QAKDLEETLFN--------EENLRLHPAQLVQL----VDSHVQSILAHGTKICDINDYKG 291
A+ L++ N E+ PA+ + V+++V + LA + + YK
Sbjct: 133 AARSLDDLRVNTQRKARGDAEDEDDEPAESYEAFEMRVNAYVAAHLATASS-SKRDSYKD 191
Query: 292 G--EELRSAFVAQVLSRHVKRKC 312
G + R + + L + +KC
Sbjct: 192 GLVYQARKDVIQEFLKTAITKKC 214
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 58/92 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PD + IG+P FA+ LT+P PVTP+N LR+ VI GP YPGA M++
Sbjct: 501 YAARSVISPDVNIEPSEIGIPPVFARKLTFPEPVTPFNFHELRQYVITGPRGYPGATMVE 560
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQH 105
EDG + + QR ++A +L+TP++ H
Sbjct: 561 YEDGHLQFLDKLTVEQRTAIANQLLTPQEGNH 592
>gi|343429431|emb|CBQ73004.1| related to DNA-directed RNA polymerase I [Sporisorium reilianum
SRZ2]
Length = 1800
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 90/236 (38%), Positives = 134/236 (56%), Gaps = 17/236 (7%)
Query: 399 ATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMK------ 452
+ D FI L VPP RP S+ E+S+N+L ++L + +++ I +
Sbjct: 387 SADNFFISVLAVPPTRFRPASIMGDMTFENSQNELLTNVLKTTFAIRDQITELARLASKK 446
Query: 453 -------NKEQSDLLSEALKGI--RGDTLNNKLQNSWHELQYNVDLLMDAKLN-INKTTG 502
N +S+ + + I R DT K+ NS +LQ +V+ +DA N + G
Sbjct: 447 DFPELGPNAPESEYRAAEAQLIKSREDT-RRKVLNSMMQLQVDVNSFIDASKNPMPLRQG 505
Query: 503 AHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPV 562
G+KQ L+ K G+ R++MMGKRVNFA RSVI+PD + + IGVP FA+ LTYP
Sbjct: 506 QLPPPGVKQGLEKKEGLFRKHMMGKRVNFAARSVISPDVNIETNEIGVPPVFARKLTYPE 565
Query: 563 PVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPE 618
PVT NV L+R++VINGP YPGA I++EDG+ ++ +R +LA +L+TP+
Sbjct: 566 PVTVHNVQLMRQLVINGPFKYPGAVAIRSEDGTETQLDKLSVEERTALANQLLTPQ 621
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 74/124 (59%), Gaps = 1/124 (0%)
Query: 126 LKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCK 185
+ T ++++++SV ++ +P+ ++ H GGLYD A+GP+ D C+TC N +C
Sbjct: 16 FSFLTAEDIRRISVKQIINPVLLDTTNHPNAGGLYDSALGPMRPN-DICSTCHLNSYQCP 74
Query: 186 GHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQA 245
GH GHIELP PV + LF ++ LL+ +CF CH+ I +++LL+ G V A
Sbjct: 75 GHFGHIELPSPVFHPLFMGNMFNLLRGTCFYCHRFRATLVVLTKVIGRLRLLEYGLVDDA 134
Query: 246 KDLE 249
+++E
Sbjct: 135 ENIE 138
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 62/93 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PD + + IGVP FA+ LTYP PVT NV L+R++VINGP YPGA I+
Sbjct: 534 FAARSVISPDVNIETNEIGVPPVFARKLTYPEPVTVHNVQLMRQLVINGPFKYPGAVAIR 593
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHR 106
+EDG+ ++ +R +LA +L+TP++ +
Sbjct: 594 SEDGTETQLDKLSVEERTALANQLLTPQEHSSK 626
>gi|167382961|ref|XP_001736348.1| DNA-directed RNA polymerase I subunit RPA1 [Entamoeba dispar
SAW760]
gi|165901328|gb|EDR27412.1| DNA-directed RNA polymerase I subunit RPA1, putative [Entamoeba
dispar SAW760]
Length = 1568
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 148/545 (27%), Positives = 248/545 (45%), Gaps = 92/545 (16%)
Query: 115 TRQEVVPEILK--LKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGD 172
T QE EI +Y+ E++ +SV ++ +F+ LG+ GLYD A+G + +
Sbjct: 9 TFQETPVEITSTGFDFYSADEIRHMSVKEITKGTSFDLLGNQELEGLYDPALG-VFGKNT 67
Query: 173 PCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFIN 232
C TCG C GH GH EL P+ L ++ LL+ C CH ++ A+ Q++
Sbjct: 68 ICPTCGLTEEGCPGHFGHFELEEPLYQPLLLPELVKLLRSICMKCH--SLKASKQVILGA 125
Query: 233 QIKL------------------LDAGYV------TQAKDLEETLFNEENLRLHPAQLVQL 268
I+L +A Y+ ++ K E + +EENL + +
Sbjct: 126 AIELERLSKNDIEGAMDIHGLVKEAQYIQRKANASRGKLKREQVEDEENLTVE-----RE 180
Query: 269 VDSHVQSIL----AHGTK--ICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAI 322
VD ++ I G K I I+ + +++ +A +++ K C +C T I
Sbjct: 181 VDKELERIFKKECGKGIKKDISFIHTDTHCKAVKNELIAHMVALKDK-PCPYCKTVSPKI 239
Query: 323 SYQQRKIIKSFKIDKDNLDQSLDKSLNKSSN------QIIRKREQGYVMASEVEAD--FK 374
K F +N D + ++S +K I+++ + + +EV + +
Sbjct: 240 VLNDSKT--GFVFYGENTDAAKNRSEHKYETTPSYIMNILKEAWEHNDIQNEVLSRMYYS 297
Query: 375 KLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLY 434
++ E L + +IP + I F+ L +PP+ R L+ +H ++ Y
Sbjct: 298 QMRGGEKLDI--IIP---------SYHIFFVEVLPIPPSRFRQLNKFGELISDHPQSIYY 346
Query: 435 QSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAK 494
++I+ E S+ L +G R D L + + YN+ +L
Sbjct: 347 RTII----------------ESSNTLKVRREGTRIDYSERFLIDQMQK-AYNLLIL---- 385
Query: 495 LNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEF 554
T A + +K +L+ K G+ R NMMGKRVN+A R+VI+PDP+L ++IG+PL F
Sbjct: 386 -----TGNAEEGISMKSILEHKKGLFRNNMMGKRVNYAARTVISPDPFLPTNTIGMPLPF 440
Query: 555 AKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDG-SVVRISSS---QAVQRESL 610
A LT VPV N +++ VINGP V+PGA I+NE G +V + S +R+
Sbjct: 441 AMRLTIAVPVNERNYEEMKQAVINGPQVWPGALYIENEWGHKIVLLDDSNPYNKTKRQGE 500
Query: 611 AKRLI 615
A+RL+
Sbjct: 501 AERLL 505
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 60/99 (60%), Gaps = 4/99 (4%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ R+VI+PDP+L ++IG+PL FA LT VPV N +++ VINGP V+PGA I+
Sbjct: 417 YAARTVISPDPFLPTNTIGMPLPFAMRLTIAVPVNERNYEEMKQAVINGPQVWPGALYIE 476
Query: 74 NEDG-SVVRISSS---QAVQRESLAKRLITPEDQQHRAI 108
NE G +V + S +R+ A+RL+ + + R+
Sbjct: 477 NEWGHKIVLLDDSNPYNKTKRQGEAERLLVIDPKAPRSF 515
>gi|29539342|dbj|BAC67672.1| DNA-directed RNA polymerase II largest subunit [Cyanidioschyzon
merolae]
gi|449019055|dbj|BAM82457.1| RNA polymerase II largest subunit [Cyanidioschyzon merolae strain
10D]
Length = 1819
Score = 142 bits (357), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 130/481 (27%), Positives = 201/481 (41%), Gaps = 81/481 (16%)
Query: 133 EVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIE 192
E+++LSVV+V + F G GG+ D +G I +R PC TC + C GH GHIE
Sbjct: 28 ELRRLSVVRVEYDVAFER-GVPKAGGVLDPRLGAI-DRNFPCATCEGSSIDCPGHFGHIE 85
Query: 193 LPVPVINTLFFRDVQLLLKLSCFLCHKINIPAT-SQLLFINQIKLLDAGYVTQAKDLEET 251
L PV N L V L+ C+ C ++ + + S++L +IK
Sbjct: 86 LVKPVFNVLMLSTVLKTLRCVCYYCSRLLVDGSDSRMLRAARIK---------------- 129
Query: 252 LFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRK 311
P + Q V L +GT++C E+L + +
Sbjct: 130 ---------DPVKRFQAVFQ-----LCNGTRVCGGGADSSEEQLMLPAAVLEARERIGKP 175
Query: 312 CIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVEA 371
C ++ +I+ F + + RK+E + A V+
Sbjct: 176 REGCGNLQPHVTRDGLRILAEFP--------------DAEAFAAERKQE---LAAERVQQ 218
Query: 372 DFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRN 431
F+ + +E L L P + M + L VPP ++RP QM V +
Sbjct: 219 IFRHI-RDEDLELLGFHPRFSRP------EWMVLSVLPVPPPHVRP--SIQMDAVSRGED 269
Query: 432 KLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLM 491
L + G + A++ E + ++ + LQ++V M
Sbjct: 270 DL----TFKLGDIIKANNALQRLEAEGAPAHVIR------------EQYVLLQFHVATFM 313
Query: 492 DAKL-NINKTT--GAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSI 548
+ L + + T + + Q L GK G +R N+MGKRVNF+ R+VIT DP L +D +
Sbjct: 314 NNDLPGMPRATLRSGRPLKSIAQRLKGKEGRVRNNLMGKRVNFSARTVITADPQLALDEV 373
Query: 549 GVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRE 608
GVP A TLTYP VTP+N+ L + V NGPN YPGA + DG + + Q V+R
Sbjct: 374 GVPRSVAMTLTYPEVVTPYNIDRLWEAVRNGPNAYPGALFVIRNDGKRIAL---QFVRRS 430
Query: 609 S 609
+
Sbjct: 431 A 431
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L +D +GVP A TLTYP VTP+N+ L + V NGPN YPGA +
Sbjct: 356 FSARTVITADPQLALDEVGVPRSVAMTLTYPEVVTPYNIDRLWEAVRNGPNAYPGALFVI 415
Query: 74 NEDGSVVRISSSQAVQRES 92
DG + + Q V+R +
Sbjct: 416 RNDGKRIAL---QFVRRSA 431
>gi|396496347|ref|XP_003844722.1| similar to DNA-directed RNA polymerase iii largest subunit
[Leptosphaeria maculans JN3]
gi|312221303|emb|CBY01243.1| similar to DNA-directed RNA polymerase iii largest subunit
[Leptosphaeria maculans JN3]
Length = 1520
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 144/528 (27%), Positives = 232/528 (43%), Gaps = 81/528 (15%)
Query: 106 RAIMKEKIITRQEVVPEILKLKYYTDQEVKQLSVVKV-------FSPITFNSLGHTIPGG 158
R K++++ R + ++ Y++Q++ +V++V +P N T G
Sbjct: 55 RTSAKQQVVDRIPARIKHIQFGIYSNQDIVNQAVLEVSDRNVYDLAPAANNERTLTANGP 114
Query: 159 LYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCH 218
+ D+ MG IS + C TCG KC GH GHI+L +P + + + + +L C C
Sbjct: 115 M-DIHMG-ISSKTGTCGTCGEGLDKCNGHFGHIKLALPAFHVGYLKHIIEVLNCICKDCS 172
Query: 219 KINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILA 278
++ + T + ++ ++ D + + ++ L E+ + + V+ + A
Sbjct: 173 RVLLDETERRKYLRSMRRPDMDTLRRTAISKKIL--EDCRKKKTCPYCGALQGTVRKVPA 230
Query: 279 HGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKD 338
H KI + + + A S ++K P I + Q SF+ K
Sbjct: 231 HPLKI-----------IHNRYDAYNRSTAKQKKA-----PAGKIEFDQ-----SFEAAK- 268
Query: 339 NLDQSLDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELI 398
+ LDK L K+ + + R V FKK+ + E L +IP D E++
Sbjct: 269 AANPDLDKHLKKAVDDMHPLR---------VLNLFKKI-SPEDCELLAMIPE-DARPEML 317
Query: 399 ATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSD 458
+ M VPP LRP M++ E I + + S+I A
Sbjct: 318 IWEYM-----PVPPVALRPSVMQEGGATEDDVTNKIGDICH----ISSIIRA-------- 360
Query: 459 LLSEALKGI-RGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQ-IDGLKQMLDGK 516
G+ RG L L W LQ + + +++ K G + + G Q L GK
Sbjct: 361 -------GLARGFPLQ-ILMEQWDFLQLQIAMYINSDAPGLKQQGLQKTMRGFSQRLKGK 412
Query: 517 TGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMV 576
G RQN+ GKRV+F+GR+VI PDP L+ID + VP AK LTYP T +N+ LR++V
Sbjct: 413 GGRFRQNLSGKRVDFSGRTVIGPDPNLSIDEVAVPERIAKNLTYPEKATRYNIDKLRRLV 472
Query: 577 INGPNVYPGANMIQNED------GSVVRISSSQAVQR----ESLAKRL 614
NG N YPGAN I ++ G + I+ S+ +R E AKRL
Sbjct: 473 KNGANEYPGANYILTDEGPNKDRGKISLIALSRHAKRGEKLEGPAKRL 520
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 54/94 (57%), Gaps = 10/94 (10%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI PDP L+ID + VP AK LTYP T +N+ LR++V NG N YPGAN I
Sbjct: 427 FSGRTVIGPDPNLSIDEVAVPERIAKNLTYPEKATRYNIDKLRRLVKNGANEYPGANYIL 486
Query: 74 NED------GSVVRISSSQAVQR----ESLAKRL 97
++ G + I+ S+ +R E AKRL
Sbjct: 487 TDEGPNKDRGKISLIALSRHAKRGEKLEGPAKRL 520
>gi|408381652|ref|ZP_11179200.1| DNA-directed RNA polymerase subunit A' [Methanobacterium formicicum
DSM 3637]
gi|407815583|gb|EKF86153.1| DNA-directed RNA polymerase subunit A' [Methanobacterium formicicum
DSM 3637]
Length = 871
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 117/478 (24%), Positives = 208/478 (43%), Gaps = 122/478 (25%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHI 191
+ ++++SV K+ +P T++ G+ I GL D +G I + G C +CG+ C+GH GHI
Sbjct: 19 ENIRRMSVTKIVTPDTYDEDGYPIEAGLMDPRLGVI-DPGLRCRSCGSKGGDCQGHFGHI 77
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEET 251
L PV++ F + +L+ +C C ++ + T ++ + ++I E
Sbjct: 78 NLARPVVHVGFADTIHKILRSTCSECGRVLLTETERIDYRDRI--------------ESR 123
Query: 252 LFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRK 311
L NEE++ + V V + + K
Sbjct: 124 LKNEESI--------------------------------------TGLVKDVYTTARRDK 145
Query: 312 CIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMA-SEVE 370
C C D + D +DK ++ I+ E Y + SEV
Sbjct: 146 CPHC--------------------DTEQEDVKIDKPVS-----IV---EGNYKLTPSEVR 177
Query: 371 ADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRP-LSMEQMPPVEHS 429
+K+ +++++L ++ + M + L VPP +RP +++E E S
Sbjct: 178 ERLEKIPEDDYVYL-------GINSKVARPEWMVLTVLPVPPVTVRPSITLETG---ERS 227
Query: 430 RNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDL 489
+ L ++ I+ + + + ++ + A + I +++ W LQY+V
Sbjct: 228 EDDLTHKLVD--------ILRINQRLKENMEAGAPQLI--------VEDLWELLQYHVTT 271
Query: 490 LMDAKLNINKTTG--------AHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDP 541
D N+ +G + L Q L GK G R N+ GKRVNF+ R+VI+PDP
Sbjct: 272 YFD-----NEASGVPPARHRSGRPLKTLAQRLKGKEGRFRSNLSGKRVNFSARTVISPDP 326
Query: 542 YLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
++I+ +GVPL A +T P+ VT WN+ ++K + NGP +PGAN + D +R+
Sbjct: 327 NISINEVGVPLMIATEVTVPIYVTEWNIEDMKKYIRNGPKQHPGANYVIRPDARKIRV 384
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 45/69 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP ++I+ +GVPL A +T P+ VT WN+ ++K + NGP +PGAN +
Sbjct: 316 FSARTVISPDPNISINEVGVPLMIATEVTVPIYVTEWNIEDMKKYIRNGPKQHPGANYVI 375
Query: 74 NEDGSVVRI 82
D +R+
Sbjct: 376 RPDARKIRV 384
>gi|321259651|ref|XP_003194546.1| DNA-directed RNA polymerase II largest subunit [Cryptococcus gattii
WM276]
gi|317461017|gb|ADV22759.1| DNA-directed RNA polymerase II largest subunit, putative
[Cryptococcus gattii WM276]
Length = 1786
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 125/474 (26%), Positives = 197/474 (41%), Gaps = 74/474 (15%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHI 191
+E+K SV K+ S + G GGL D MG I +R C TC ++C GH GHI
Sbjct: 26 EEIKAFSVAKIESTEVLDENGKQKVGGLMDPKMGTI-DRNFKCQTCLEGMSECPGHFGHI 84
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEET 251
EL PV + F V+ +L+ C+ C K+ + D+ +
Sbjct: 85 ELARPVFHQGFIVKVKKILECVCYSCGKLKV------------------------DMRDP 120
Query: 252 LFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLS--RHVK 309
+ R+ ++ + + LA KIC+ ++ + + F + L +
Sbjct: 121 MVANAVRRIKAQHRLKAIWA-----LAKDKKICEPDELDEKDNGDATFEDEYLQEKKATM 175
Query: 310 RKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEV 369
+ C + K++ +K D++ + E+ V EV
Sbjct: 176 KGHGGCGHEQPVWRKKGLKLLGVWKPTDKGEDEATEP-------------EERNVSPGEV 222
Query: 370 EADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHS 429
KK+ T E L + L + D M + L VPP +RP
Sbjct: 223 YNILKKI-TPEDLHIMGL------NADYARPDWMILTVLPVPPAAVRP------------ 263
Query: 430 RNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHEL-QYNVD 488
SI G+++S Q + ++ + + + + N +L QY+V
Sbjct: 264 ------SIAVDGGAMRSEDDLTYKLSQIIKFNGVVRRMEAEGVPPSVVNEQFDLLQYHVC 317
Query: 489 LLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNI 545
MD A L ++ G I ++ L GK G +R N+MGKRV+F+ R+VIT DP L +
Sbjct: 318 TYMDNDIAGLPRDQQKGGRAIKAIRARLKGKEGRMRGNLMGKRVDFSARTVITGDPNLQL 377
Query: 546 DSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
D +GVP A TLTYP VTP+N+ L+ +V NGP YPGA + G V +
Sbjct: 378 DQVGVPKSIAMTLTYPERVTPYNIVYLQTLVNNGPATYPGARYYVKDTGERVDL 431
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 42/69 (60%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L +D +GVP A TLTYP VTP+N+ L+ +V NGP YPGA
Sbjct: 363 FSARTVITGDPNLQLDQVGVPKSIAMTLTYPERVTPYNIVYLQTLVNNGPATYPGARYYV 422
Query: 74 NEDGSVVRI 82
+ G V +
Sbjct: 423 KDTGERVDL 431
>gi|388853445|emb|CCF52844.1| related to DNA-directed RNA polymerase I [Ustilago hordei]
Length = 1798
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/235 (36%), Positives = 132/235 (56%), Gaps = 15/235 (6%)
Query: 399 ATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMK------ 452
+ D FI L VPP RP S+ E+S+N+L + L + +++ I +
Sbjct: 387 SADNFFITVLAVPPTRFRPASIMGDMTFENSQNELLTNALKTTFAIRDQITELTRLTSKK 446
Query: 453 -------NKEQSDLLSEALKGIRG-DTLNNKLQNSWHELQYNVDLLMDAKLN-INKTTGA 503
N +SD + ++ I+ + K+ NS +LQ +V+ +DA N + G
Sbjct: 447 DFPELGPNAPESDYRAAEVQLIKAREDTRRKVLNSMMQLQVDVNSFIDANKNPMPLRQGQ 506
Query: 504 HQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVP 563
G+KQ L+ K G+ R++MMGKRVNFA RSVI+PD + + IGVP FA+ LTYP P
Sbjct: 507 LPPPGVKQGLEKKEGLFRKHMMGKRVNFAARSVISPDVNIETNEIGVPPVFARKLTYPEP 566
Query: 564 VTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPE 618
T N+ L+R++VINGP YPGA I++EDG+ ++ +R +LA +L+TP+
Sbjct: 567 ATVHNIQLMRQLVINGPFKYPGAVAIRSEDGTETQLDKLSVEERTALANQLLTPQ 621
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 74/124 (59%), Gaps = 1/124 (0%)
Query: 126 LKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCK 185
+ T ++++++SV ++ +P+ ++ H GGLYD A+GP+ D C+TC N +C
Sbjct: 16 FSFLTAEDIRRISVKQIINPVLLDTTNHPNAGGLYDPALGPMRPH-DICSTCHLNSYQCS 74
Query: 186 GHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQA 245
GH GHIELP PV + LF ++ LL+ +CF CH+ I +++LL+ G V A
Sbjct: 75 GHFGHIELPSPVFHPLFMGNMFNLLRGTCFYCHRFRASLVVLTKVIGRLRLLEYGLVDDA 134
Query: 246 KDLE 249
++++
Sbjct: 135 ENID 138
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 61/93 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PD + + IGVP FA+ LTYP P T N+ L+R++VINGP YPGA I+
Sbjct: 534 FAARSVISPDVNIETNEIGVPPVFARKLTYPEPATVHNIQLMRQLVINGPFKYPGAVAIR 593
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHR 106
+EDG+ ++ +R +LA +L+TP++ +
Sbjct: 594 SEDGTETQLDKLSVEERTALANQLLTPQEHSSK 626
>gi|405120884|gb|AFR95654.1| DNA-directed RNA polymerase II largest subunit [Cryptococcus
neoformans var. grubii H99]
Length = 1786
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 124/472 (26%), Positives = 200/472 (42%), Gaps = 70/472 (14%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHI 191
+E+K SV K+ S + G GGL D MG I +R C TC ++C GH GHI
Sbjct: 26 EEIKAFSVAKIESTEVLDENGKQKVGGLMDPKMGTI-DRNFKCQTCLEGMSECPGHFGHI 84
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEET 251
EL PV + F V+ +L+ C+ C K+ + D+ +
Sbjct: 85 ELARPVFHQGFIVKVKKILECVCYSCGKLKV------------------------DMRDP 120
Query: 252 LFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRK 311
+ R+ ++ + + LA KIC+ ++ + + F + L
Sbjct: 121 MVANAVRRIKAQHRLKAIWA-----LAKDKKICEPDELDEKDNGDATFEDEYLQEQK--- 172
Query: 312 CIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVEA 371
A + ++ + + + + + DK ++++ + E+ V EV
Sbjct: 173 ---AALKGHGGCGHEQPVWRKKGLKLMGVWKPTDKGEDEAA-----EPEERNVSPGEVYN 224
Query: 372 DFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRN 431
KK+ T E L + L + D M + L VPP +RP
Sbjct: 225 ILKKI-TPEDLHIMGL------NADYARPDWMILTVLPVPPAAVRP-------------- 263
Query: 432 KLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHEL-QYNVDLL 490
SI G+++S Q + ++ + + + + N +L QY+V
Sbjct: 264 ----SIAVDGGAMRSEDDLTYKLSQIIKFNGVVRRMEAEGVPPSVVNEQFDLLQYHVCTY 319
Query: 491 MD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDS 547
MD A L ++ G I ++ L GK G +R N+MGKRV+F+ R+VIT DP L +D
Sbjct: 320 MDNDIAGLPRDQQKGGRAIKAIRARLKGKEGRMRGNLMGKRVDFSARTVITGDPNLQLDQ 379
Query: 548 IGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
+GVP A TLTYP VTP+N+ L+ +V NGP YPGA + G V +
Sbjct: 380 VGVPKSIAMTLTYPERVTPYNIVYLQTLVNNGPATYPGARYYVKDTGERVDL 431
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 42/69 (60%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L +D +GVP A TLTYP VTP+N+ L+ +V NGP YPGA
Sbjct: 363 FSARTVITGDPNLQLDQVGVPKSIAMTLTYPERVTPYNIVYLQTLVNNGPATYPGARYYV 422
Query: 74 NEDGSVVRI 82
+ G V +
Sbjct: 423 KDTGERVDL 431
>gi|341881185|gb|EGT37120.1| hypothetical protein CAEBREN_30567 [Caenorhabditis brenneri]
Length = 1591
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 129/229 (56%), Gaps = 11/229 (4%)
Query: 366 ASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDI------MFIRSLVVPPNNLRPLS 419
+EV F+ L+ N+ L L P+L EL D+ +F+ ++VPP RP+
Sbjct: 239 GAEVREHFRILFKNDGKLLLKLFPML--IDELNGEDMVCPLDGLFLERVLVPPKKFRPIR 296
Query: 420 MEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNS 479
M + E + + +L + ++ ++ + MK + L +RG T++ ++ ++
Sbjct: 297 MFKGAQYEDPQTLNLRRVLEATETISALSLMMKGDNSAKLKELIANRVRGKTIDAQIHDA 356
Query: 480 WHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
+ +LQ + + D LN + I G+KQ+L+ K G+ R +MMGKRVNFA RSVITP
Sbjct: 357 YLQLQLRCNAIFDQDLNRGERD---SIAGIKQILEKKQGLFRMHMMGKRVNFACRSVITP 413
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANM 588
DPYL+ID IG+P FAK LT+ PV +N+ +++++ GP+ +PGAN
Sbjct: 414 DPYLDIDEIGIPDIFAKKLTFTEPVNAFNMKEMKELLRKGPHQHPGANF 462
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
KL+ Y E+ +LSV+K+ TF+ +GH I GGLYD +GP D C TC
Sbjct: 18 FKLRNYFPHEIDKLSVLKITQTKTFDEVGHPIAGGLYDPILGP-DNTFDQCLTCNQYERH 76
Query: 184 CKGHIGHIELPVPVINTLFFR 204
C GH+GHI+L VPV N L F+
Sbjct: 77 CPGHMGHIQLSVPVFNPLLFQ 97
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 42/58 (72%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANM 71
F RSVITPDPYL+ID IG+P FAK LT+ PV +N+ +++++ GP+ +PGAN
Sbjct: 405 FACRSVITPDPYLDIDEIGIPDIFAKKLTFTEPVNAFNMKEMKELLRKGPHQHPGANF 462
>gi|222635876|gb|EEE66008.1| hypothetical protein OsJ_21959 [Oryza sativa Japonica Group]
Length = 994
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/262 (31%), Positives = 142/262 (54%), Gaps = 28/262 (10%)
Query: 363 YVMASEVEADFKKLWTNEHLFLKCLIP----VLDTTKELIATDIMFIRSLVVPPNNLRPL 418
+++ +EVE+ K LW E F L L +++ ++ F+++L+V PN RP
Sbjct: 76 HLLTTEVESILKDLWKKEARFCMLLCDFQQNTLSVSEKRRGYEMFFLKNLLVAPNRFRPS 135
Query: 419 SMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQN 478
+ +EH +N L + S +L+ I A + E +
Sbjct: 136 ISSSLGIMEHPQNVLLSKVQESNLALQQSIAASNHME--------------------VLR 175
Query: 479 SWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
W +LQ NV++L D+ ++K +G++Q+L+ K G++RQ MMGKRVN+A RSVI+
Sbjct: 176 RWMDLQRNVNVLYDSSKGLSKN--EKNANGIRQLLEKKEGILRQKMMGKRVNYACRSVIS 233
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVR 598
PDPYL ++ IG+P FA LTYP VTPWN L++ + NG +++PGA ++ + ++ +
Sbjct: 234 PDPYLAVNEIGIPPVFATRLTYPEKVTPWNARKLQEAINNGADIHPGATHYRD-NNNMYK 292
Query: 599 ISSSQAVQRESLAKRLITPEGN 620
+ ++ +R ++AK L G+
Sbjct: 293 LQAAPP-KRRAIAKMLPASRGS 313
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 39/53 (73%)
Query: 17 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGA 69
RSVI+PDPYL ++ IG+P FA LTYP VTPWN L++ + NG +++PGA
Sbjct: 229 RSVISPDPYLAVNEIGIPPVFATRLTYPEKVTPWNARKLQEAINNGADIHPGA 281
>gi|68370162|ref|XP_682682.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Danio rerio]
Length = 1972
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 138/477 (28%), Positives = 218/477 (45%), Gaps = 88/477 (18%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E+K++SV + + P T G GGL D G I ER C TC N T+C GH GH
Sbjct: 28 ELKRMSVTEGGIKYPETTEG-GRPKLGGLMDPRQGVI-ERSGRCQTCAGNMTECPGHFGH 85
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
IEL PV + F + +L+ CF C K+ L+ N K+ D +T++K
Sbjct: 86 IELAKPVFHVGFITKIMKVLRCVCFFCSKL-------LVDANNPKIKD--ILTKSK---- 132
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAF-VAQVLSRHVK 309
+ RL +HV L G IC+ GGEE+ + F V Q S +
Sbjct: 133 ---GQPRKRL----------THVYD-LCKGKNICE-----GGEEMDNKFGVEQPESEDIT 173
Query: 310 RKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGYVMASE 368
++ YQ R I + L+ + K +N+ S +E+ +++ E
Sbjct: 174 KEKGHGG----CGRYQPR-------IRRSGLELYAEWKHVNEDS------QEKKILLSPE 216
Query: 369 -VEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVE 427
V FK++ E + +L + + M + L VPP +RP + Q
Sbjct: 217 RVHEIFKRIADEEDI-------ILGMDPKYARPEWMIVTVLPVPPLAVRPAVVMQ----G 265
Query: 428 HSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNV 487
+RN+ + + + + +K EQS + + + KL LQ++V
Sbjct: 266 SARNQ--DDLTHKLADIVKINNQLKRNEQSGAAAHVI------AEDVKL------LQFHV 311
Query: 488 DLLMDAKL-----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPY 542
++D +L + K+ + +KQ L GK G +R N+MGKRV+F+ R+VITPDP
Sbjct: 312 ATMVDNELPGLPRAMQKS--GRPLKSIKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPN 369
Query: 543 LNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
L ID +GVP A +T+P VTP+N+ L+++V G + YPGA I ++G + +
Sbjct: 370 LQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL 426
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 44/69 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A +T+P VTP+N+ L+++V G + YPGA I
Sbjct: 358 FSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYII 417
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 418 RDNGDRIDL 426
>gi|260940725|ref|XP_002614662.1| hypothetical protein CLUG_05440 [Clavispora lusitaniae ATCC 42720]
gi|238851848|gb|EEQ41312.1| hypothetical protein CLUG_05440 [Clavispora lusitaniae ATCC 42720]
Length = 1248
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 68/140 (48%), Positives = 96/140 (68%)
Query: 478 NSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVI 537
N++ +Q +V+ +D+ N N G + G+KQ L+ K G+ R++MMGKRVN+A RSVI
Sbjct: 2 NAFVTIQNDVNAFIDSTKNQNAQAGKMPVPGIKQALEKKEGLFRKHMMGKRVNYAARSVI 61
Query: 538 TPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
+PDP L + IGVP FA LTYP PVT +NV LR+ VINGP+ +PGA +QNEDGS+V
Sbjct: 62 SPDPNLETNEIGVPPVFAVKLTYPEPVTAYNVAELRQAVINGPDKWPGAIQVQNEDGSMV 121
Query: 598 RISSSQAVQRESLAKRLITP 617
+ QR+++A +L+TP
Sbjct: 122 SLIGMTLEQRKAIANQLLTP 141
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 69/108 (63%), Gaps = 7/108 (6%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP L + IGVP FA LTYP PVT +NV LR+ VINGP+ +PGA +Q
Sbjct: 55 YAARSVISPDPNLETNEIGVPPVFAVKLTYPEPVTAYNVAELRQAVINGPDKWPGAIQVQ 114
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPED-------QQHRAIMKEKII 114
NEDGS+V + QR+++A +L+TP + + HR I + ++
Sbjct: 115 NEDGSMVSLIGMTLEQRKAIANQLLTPSNGATVINKKVHRHIKNKDVV 162
>gi|336121472|ref|YP_004576247.1| DNA-directed RNA polymerase subunit A' [Methanothermococcus
okinawensis IH1]
gi|334855993|gb|AEH06469.1| DNA-directed RNA polymerase subunit A' [Methanothermococcus
okinawensis IH1]
Length = 888
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 126/468 (26%), Positives = 200/468 (42%), Gaps = 117/468 (25%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHI 191
+ ++++SV K+ + T++ G+ I GGL D +G I + G C TCG C GH GHI
Sbjct: 21 EHIRKISVAKIVTADTYDDDGYPIDGGLMDTRLGVI-DPGLVCKTCGGRVGSCPGHFGHI 79
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEET 251
EL PV++ F +D+ +LK C C ++ I + + A Y+ + K LEE
Sbjct: 80 ELSKPVVHIGFAKDIYKILKAVCPHCGRVAISESKR-----------AEYLEKMKRLEE- 127
Query: 252 LFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRK 311
+GG++ A ++L +
Sbjct: 128 --------------------------------------EGGDKW--ALADEILKEAAGKD 147
Query: 312 -CIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVE 370
C +C I Y K ++ID KS QI +SEV
Sbjct: 148 VCPYCGEVKYDIKYS--KPTTYYQID------------GKSQRQI---------TSSEVR 184
Query: 371 ADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRP-LSMEQMPPVEHS 429
+K+ + C + L E+ + M + L VPP +RP +++E E S
Sbjct: 185 EILEKIPDED-----CTL--LGINPEVARPEWMVLTVLPVPPVTVRPSITLESG---ERS 234
Query: 430 RNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDL 489
+ L ++ +I + E++ I G N +++ W LQY+++
Sbjct: 235 EDDLTHKLV-------DIIRINQRLEEN---------IEGGAPNLIIEDLWDLLQYHINT 278
Query: 490 LMDAKLNINKTTG---AHQIDG-----LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDP 541
D N+ G A G + Q L GK G R N+ GKRVNF+ R+VI+PDP
Sbjct: 279 YFD-----NEAPGTPPARHRSGRPLRTIAQRLKGKEGRFRHNLAGKRVNFSARTVISPDP 333
Query: 542 YLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 589
L+I+ +GVP + AK LT P VT +N+ +R+++ NG +PG N I
Sbjct: 334 CLSINEVGVPEKIAKELTVPEKVTRYNINKIRELLKNGSEKHPGVNYI 381
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 40/59 (67%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 72
F R+VI+PDP L+I+ +GVP + AK LT P VT +N+ +R+++ NG +PG N I
Sbjct: 323 FSARTVISPDPCLSINEVGVPEKIAKELTVPEKVTRYNINKIRELLKNGSEKHPGVNYI 381
>gi|326672374|ref|XP_003199653.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Danio
rerio]
Length = 1921
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 138/477 (28%), Positives = 218/477 (45%), Gaps = 88/477 (18%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E+K++SV + + P T G GGL D G I ER C TC N T+C GH GH
Sbjct: 28 ELKRMSVTEGGIKYPETTEG-GRPKLGGLMDPRQGVI-ERSGRCQTCAGNMTECPGHFGH 85
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
IEL PV + F + +L+ CF C K+ L+ N K+ D +T++K
Sbjct: 86 IELAKPVFHVGFITKIMKVLRCVCFFCSKL-------LVDANNPKIKD--ILTKSK---- 132
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAF-VAQVLSRHVK 309
+ RL +HV L G IC+ GGEE+ + F V Q S +
Sbjct: 133 ---GQPRKRL----------THVYD-LCKGKNICE-----GGEEMDNKFGVEQPESEDIT 173
Query: 310 RKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGYVMASE 368
++ YQ R I + L+ + K +N+ S +E+ +++ E
Sbjct: 174 KEKGHGG----CGRYQPR-------IRRSGLELYAEWKHVNEDS------QEKKILLSPE 216
Query: 369 -VEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVE 427
V FK++ E + +L + + M + L VPP +RP + Q
Sbjct: 217 RVHEIFKRIADEEDI-------ILGMDPKYARPEWMIVTVLPVPPLAVRPAVVMQ----G 265
Query: 428 HSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNV 487
+RN+ + + + + +K EQS + + + KL LQ++V
Sbjct: 266 SARNQ--DDLTHKLADIVKINNQLKRNEQSGAAAHVI------AEDVKL------LQFHV 311
Query: 488 DLLMDAKL-----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPY 542
++D +L + K+ + +KQ L GK G +R N+MGKRV+F+ R+VITPDP
Sbjct: 312 ATMVDNELPGLPRAMQKS--GRPLKSIKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPN 369
Query: 543 LNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
L ID +GVP A +T+P VTP+N+ L+++V G + YPGA I ++G + +
Sbjct: 370 LQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL 426
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 44/69 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A +T+P VTP+N+ L+++V G + YPGA I
Sbjct: 358 FSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYII 417
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 418 RDNGDRIDL 426
>gi|449708432|gb|EMD47895.1| DNA-directed RNA polymerase I subunit RPA1, putative [Entamoeba
histolytica KU27]
Length = 1570
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 144/527 (27%), Positives = 235/527 (44%), Gaps = 80/527 (15%)
Query: 126 LKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCK 185
+Y+ E++ +SV ++ +F+ LG+ GLYD A+G + + C TCG C
Sbjct: 22 FDFYSADEIRHMSVKEITKGTSFDLLGNQELEGLYDPALG-VFGKNTICPTCGLTEEGCP 80
Query: 186 GHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKL--------- 236
GH GH EL P+ L ++ LL+ C CH ++ A+ Q++ I+
Sbjct: 81 GHFGHFELEEPMYQPLLLTELLKLLRSICMKCH--SLKASKQVILGAAIEFERLAKNDIE 138
Query: 237 ---------LDAGYV------TQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSIL---- 277
+A Y+ ++ K E + +EENL + + VD ++SI
Sbjct: 139 GAMDIHGLVKEAQYIQRKANASRGKLKREQIEDEENLTVE-----REVDKELESIFKKEC 193
Query: 278 AHGTK--ICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKI 335
G K I I+ + +R+ +A +++ K C +C T I K F
Sbjct: 194 GKGIKKDISFIHTDTHCKAVRNELIAHMVALKDK-PCPYCKTVSPKIVLNDSKT--GFVF 250
Query: 336 DKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTK 395
+N D + ++S +K Y+M EA NE L + K
Sbjct: 251 YGENTDAAKNRSEHKYETT------PSYIMNILKEAWGHNEIQNEVLSRMYYSQMRGGEK 304
Query: 396 ELI---ATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMK 452
+ + + F+ L +PP+ R L+ +H ++ Y++I+ S
Sbjct: 305 LDVIVPSYHMFFVEVLPIPPSRFRQLNKFGDLISDHPQSIYYRTIIES------------ 352
Query: 453 NKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQM 512
S ALK R T + + +Y +D + A + T A + +K +
Sbjct: 353 --------SNALKVRREGTALD------YPEKYFIDQMQKAYNLLILTGNADEGISMKSI 398
Query: 513 LDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLL 572
L+ K G+ R NMMGKRVN+A R+VI+PDP+L ++IG+PL FA LT VPV N +
Sbjct: 399 LEHKKGLFRNNMMGKRVNYAARTVISPDPFLPTNTIGMPLPFAMRLTIAVPVNERNYEEM 458
Query: 573 RKMVINGPNVYPGANMIQNEDG-SVVRISSS---QAVQRESLAKRLI 615
++ VINGP V+PGA I+NE G +V + S +R+ A+RL+
Sbjct: 459 KQAVINGPQVWPGALYIENEWGHKIVLLDDSNPYNKTKRQGEAERLL 505
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 60/99 (60%), Gaps = 4/99 (4%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ R+VI+PDP+L ++IG+PL FA LT VPV N +++ VINGP V+PGA I+
Sbjct: 417 YAARTVISPDPFLPTNTIGMPLPFAMRLTIAVPVNERNYEEMKQAVINGPQVWPGALYIE 476
Query: 74 NEDG-SVVRISSS---QAVQRESLAKRLITPEDQQHRAI 108
NE G +V + S +R+ A+RL+ + + R+
Sbjct: 477 NEWGHKIVLLDDSNPYNKTKRQGEAERLLVIDPKAPRSF 515
>gi|302843962|ref|XP_002953522.1| hypothetical protein VOLCADRAFT_105949 [Volvox carteri f.
nagariensis]
gi|300261281|gb|EFJ45495.1| hypothetical protein VOLCADRAFT_105949 [Volvox carteri f.
nagariensis]
Length = 1891
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 95/270 (35%), Positives = 141/270 (52%), Gaps = 20/270 (7%)
Query: 363 YVMASEVEADFKKLWTNEHLFLKCLIP--VLDTTKELIATDIM------------FIRSL 408
Y+ EVE + LW NE L + V T + + + +M F+R +
Sbjct: 384 YMTPLEVEEHLRLLWQNEWPVLSLIYSAHVAPTPGKRVGSRLMTEAEARQAYRMFFLRVI 443
Query: 409 VVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEA-LKGI 467
VPPN RP S EH+ N I+ SC L S A + Q + A + +
Sbjct: 444 AVPPNKFRPPSKVGEELFEHAHNVSLSKIISSCLDLTSAPSATEATRQGTNATGANPEQV 503
Query: 468 RGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGK 527
L+ ++ W +LQ +V LMD L ++ GA+ + G++Q L+ K G+ R+NMMGK
Sbjct: 504 AALDLSRRVA-IWLQLQDHVCTLMD--LTTAESKGAN-VPGIRQSLEKKEGLFRKNMMGK 559
Query: 528 RVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGAN 587
RVNFA RSVI+PDPY+ IGVP FAK L++P VTP NV LR VI G +PGA
Sbjct: 560 RVNFAARSVISPDPYIGAGEIGVPPYFAKRLSFPERVTPLNVERLRAAVIVGAEAHPGAV 619
Query: 588 MIQN-EDGSVVRISSSQAVQRESLAKRLIT 616
++ G ++ + + +R++LAK+L++
Sbjct: 620 AVEEVSSGRMISLGNMPLQRRQALAKQLLS 649
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 88/145 (60%), Gaps = 4/145 (2%)
Query: 111 EKIITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISER 170
+++ TRQ ++ +YT+ EV++LSVVK+ SPI F+++ + GLYD MGP+ R
Sbjct: 7 KEVTTRQVTA---VRFGFYTEDEVRKLSVVKITSPIIFDNMKVAVADGLYDPRMGPVDVR 63
Query: 171 GDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLF 230
D C TC + +C GH GHIELPVPV N + F+ + L++ +CF CH++ + + ++
Sbjct: 64 -DRCGTCQLGFDRCPGHFGHIELPVPVYNPMVFKVLYKLMRCTCFQCHRLKLAQQTVEVY 122
Query: 231 INQIKLLDAGYVTQAKDLEETLFNE 255
+++ L G + A ++ L ++
Sbjct: 123 KAKLQRLAVGDLVDAVEINTDLVSK 147
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDPY+ IGVP FAK L++P VTP NV LR VI G +PGA ++
Sbjct: 563 FAARSVISPDPYIGAGEIGVPPYFAKRLSFPERVTPLNVERLRAAVIVGAEAHPGAVAVE 622
Query: 74 N-EDGSVVRISSSQAVQRESLAKRLIT 99
G ++ + + +R++LAK+L++
Sbjct: 623 EVSSGRMISLGNMPLQRRQALAKQLLS 649
>gi|183232815|ref|XP_649386.2| DNA-directed RNA polymerase I largest subunit [Entamoeba
histolytica HM-1:IMSS]
gi|169801864|gb|EAL43998.2| DNA-directed RNA polymerase I largest subunit, putative [Entamoeba
histolytica HM-1:IMSS]
Length = 1570
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 144/527 (27%), Positives = 235/527 (44%), Gaps = 80/527 (15%)
Query: 126 LKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCK 185
+Y+ E++ +SV ++ +F+ LG+ GLYD A+G + + C TCG C
Sbjct: 22 FDFYSADEIRHMSVKEITKGTSFDLLGNQELEGLYDPALG-VFGKNTICPTCGLTEEGCP 80
Query: 186 GHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKL--------- 236
GH GH EL P+ L ++ LL+ C CH ++ A+ Q++ I+
Sbjct: 81 GHFGHFELEEPMYQPLLLTELLKLLRSICMKCH--SLKASKQVILGAAIEFERLAKNDIE 138
Query: 237 ---------LDAGYV------TQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSIL---- 277
+A Y+ ++ K E + +EENL + + VD ++SI
Sbjct: 139 GAMDIHGLVKEAQYIQRKANASRGKLKREQIEDEENLTVE-----REVDKELESIFKKEC 193
Query: 278 AHGTK--ICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKI 335
G K I I+ + +R+ +A +++ K C +C T I K F
Sbjct: 194 GKGIKKDISFIHTDTHCKAVRNELIAHMVALKDK-PCPYCKTVSPKIVLNDSKT--GFVF 250
Query: 336 DKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTK 395
+N D + ++S +K Y+M EA NE L + K
Sbjct: 251 YGENTDAAKNRSEHKYETT------PSYIMNILKEAWGHNEIQNEVLSRMYYSQMRGGEK 304
Query: 396 ELI---ATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMK 452
+ + + F+ L +PP+ R L+ +H ++ Y++I+ S
Sbjct: 305 LDVIVPSYHMFFVEVLPIPPSRFRQLNKFGDLISDHPQSIYYRTIIES------------ 352
Query: 453 NKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQM 512
S ALK R T + + +Y +D + A + T A + +K +
Sbjct: 353 --------SNALKVRREGTALD------YPEKYFIDQMQKAYNLLILTGNADEGISMKSI 398
Query: 513 LDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLL 572
L+ K G+ R NMMGKRVN+A R+VI+PDP+L ++IG+PL FA LT VPV N +
Sbjct: 399 LEHKKGLFRNNMMGKRVNYAARTVISPDPFLPTNTIGMPLPFAMRLTIAVPVNERNYEEM 458
Query: 573 RKMVINGPNVYPGANMIQNEDG-SVVRISSS---QAVQRESLAKRLI 615
++ VINGP V+PGA I+NE G +V + S +R+ A+RL+
Sbjct: 459 KQAVINGPQVWPGALYIENEWGHKIVLLDDSNPYNKTKRQGEAERLL 505
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 60/99 (60%), Gaps = 4/99 (4%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ R+VI+PDP+L ++IG+PL FA LT VPV N +++ VINGP V+PGA I+
Sbjct: 417 YAARTVISPDPFLPTNTIGMPLPFAMRLTIAVPVNERNYEEMKQAVINGPQVWPGALYIE 476
Query: 74 NEDG-SVVRISSS---QAVQRESLAKRLITPEDQQHRAI 108
NE G +V + S +R+ A+RL+ + + R+
Sbjct: 477 NEWGHKIVLLDDSNPYNKTKRQGEAERLLVIDPKAPRSF 515
>gi|159118719|ref|XP_001709578.1| DNA-directed RNA polymerase subunit A' [Giardia lamblia ATCC 50803]
gi|133352|sp|P25202.1|RPC1_GIALA RecName: Full=DNA-directed RNA polymerase III subunit RPC1;
Short=RNA polymerase III subunit C1; AltName:
Full=DNA-directed RNA polymerase III largest subunit;
AltName: Full=RNA polymerase III subunit C160
gi|9364|emb|CAA42895.1| subunit A of DNA dependent RNA polymerase III [Giardia
intestinalis]
gi|157437695|gb|EDO81904.1| DNA-directed RNA polymerase subunit A [Giardia lamblia ATCC 50803]
Length = 1741
Score = 139 bits (350), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 120/489 (24%), Positives = 214/489 (43%), Gaps = 55/489 (11%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNY 181
E L + + +LS V++ +PI + G+ D +G +S++ C TCG +
Sbjct: 28 EKLVFSVLSSNALMKLSEVQITTPILYEHYPSPATNGVLDKRLG-LSDKVGKCATCGKDT 86
Query: 182 TKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGY 241
C GH G I L +PV + D + +L + C C ++ I +L +
Sbjct: 87 KMCIGHFGTISLALPVFHPGLINDARTMLSIVCPFCSRVKISEADRLKYKVLNHKFSLAI 146
Query: 242 VTQAKDLEETLFN-------------EENLR-LHPAQLVQLVDSHVQSILAHGTKICDIN 287
V +A++ + N + R L + + ++ H I I
Sbjct: 147 VKEAQEQAKKQVNCPFCHAPSTICKKSQGFRVLREMHYEERATKILADVIKHQKDIEKIQ 206
Query: 288 DYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKS 347
+ + LR+ V + + H+ +K C P I +Q R + S + +
Sbjct: 207 ELD--QRLRNHVVDPIQALHILQKVPECDYPYLGIPWQSRNVYASQQTPDSIASNDASQL 264
Query: 348 LNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRS 407
++ S++++ + ++ + +D T+ H FL +++I T I
Sbjct: 265 FSRGSSKLLARTASRFIAQHQGISDRATRLTS-HAFLT-------RPQDVILTHI----- 311
Query: 408 LVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGI 467
VPP+ LRP S++ + + L ++ I+ + +K L EA+ +
Sbjct: 312 -PVPPSCLRP-SVQSGSGAGTTEDNLTSHLVR--------ILTINDK-----LKEAM--V 354
Query: 468 RGDTLNNKLQNSWHELQYNVDLLMDAKLN------INKT-TGAHQIDGLKQMLDGKTGMI 520
G +K+ W +L +V LL K+ NKT +G + G+ L GK G
Sbjct: 355 SGAVATSKVYAKWDQLNMDVSLLYIGKIPGGVQPVKNKTDSGTKEGTGIIDRLKGKAGRF 414
Query: 521 RQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGP 580
R N+ GKRVNF+GR+VI+P+PYL++ + +P A+ LT+P VT N+ LR++++NG
Sbjct: 415 RSNLSGKRVNFSGRTVISPNPYLSMQQVAIPRLIAQNLTFPEIVTSRNIRFLRELILNG- 473
Query: 581 NVYPGANMI 589
YPGAN +
Sbjct: 474 KTYPGANEV 482
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 72
F R+VI+P+PYL++ + +P A+ LT+P VT N+ LR++++NG YPGAN +
Sbjct: 425 FSGRTVISPNPYLSMQQVAIPRLIAQNLTFPEIVTSRNIRFLRELILNG-KTYPGANEV 482
>gi|342320744|gb|EGU12683.1| DNA-directed RNA polymerase [Rhodotorula glutinis ATCC 204091]
Length = 1782
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 92/286 (32%), Positives = 147/286 (51%), Gaps = 25/286 (8%)
Query: 358 KREQGYVMASEVEADFKKLWTNEHLFLKCLI----PVLDTTKELI--------------- 398
K+ + V EV A ++L+ NE + + P+ + I
Sbjct: 351 KQTERIVTPDEVRAHLRRLFANEQELVTLIYAPHGPLARASSSRIPRSSADQKQGGKPAA 410
Query: 399 ATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSV----IMAMKNK 454
+ DI F+ + VPP+ RP S E+ +N L +IL ++ + + A
Sbjct: 411 SADIFFMDVVSVPPSRFRPASTMGDQVFENPQNSLLNNILRQSIVVRDLNVRLLQAQTQP 470
Query: 455 EQSDLLSEALK-GIRGDTLNNKLQNSWHELQYNVDLLMDAKLN-INKTTGAHQIDGLKQM 512
+ DL+ E K + + + L S +LQ V+ +MDA N + G G+KQ+
Sbjct: 471 DHPDLVGEDGKPRVTIERMTTMLYESLIDLQVTVNSMMDAGKNPMLVKQGKLPTPGVKQL 530
Query: 513 LDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLL 572
L+ K G+ R+NMMGKRVN+A RSVI+PD + + IGVP FA+ LT+P PVT N L
Sbjct: 531 LEKKEGLFRKNMMGKRVNYAARSVISPDVNIETNEIGVPPVFARKLTFPEPVTDHNYQQL 590
Query: 573 RKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPE 618
++ VINGP+ +PGA+ +Q EDG+++ + +R ++A +L+ PE
Sbjct: 591 KQAVINGPHQHPGASFVQMEDGNLISLDRMSLEERTAIANKLLAPE 636
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 73/126 (57%), Gaps = 1/126 (0%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
L Y +V+++SV +V +P+ F++L + GGLYD A GP+ +GD C+TC +
Sbjct: 14 LSFSYLHAPDVRRMSVKQVVNPVLFDNLNNPNAGGLYDPAFGPLG-KGDICSTCHLTSFE 72
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVT 243
C GH GHIELP PV + L+ LL+ +C CH+ + L I ++ LL+ G VT
Sbjct: 73 CPGHFGHIELPAPVFHPLYMVQAFQLLRGTCTYCHRFLVGEVQLLKQIARLTLLEHGLVT 132
Query: 244 QAKDLE 249
A +L+
Sbjct: 133 HALELD 138
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 58/88 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PD + + IGVP FA+ LT+P PVT N L++ VINGP+ +PGA+ +Q
Sbjct: 549 YAARSVISPDVNIETNEIGVPPVFARKLTFPEPVTDHNYQQLKQAVINGPHQHPGASFVQ 608
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPE 101
EDG+++ + +R ++A +L+ PE
Sbjct: 609 MEDGNLISLDRMSLEERTAIANKLLAPE 636
>gi|393247601|gb|EJD55108.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Auricularia delicata TFB-10046 SS5]
Length = 1775
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 127/472 (26%), Positives = 202/472 (42%), Gaps = 78/472 (16%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIP-GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
+E+K SV K+ P + G GGL D MG I +R C TCG +C GH GH
Sbjct: 27 EEIKAYSVAKIEFPEVMDETGQRPKQGGLMDPRMGTI-DRNFKCQTCGEGMAECPGHFGH 85
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
IEL PV + F V+ +L+ C C K+ TS F ++++ +D
Sbjct: 86 IELARPVFHVGFLVKVKKILECICVNCGKLKA-DTSDPNFADKVR--------HVRD--- 133
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKR 310
P Q + +V +H +S + +C+ ++ K ++ +A +A++ H
Sbjct: 134 -----------PKQRMAIVWNHCKSKM-----VCETDEPKDEDQEANAELAEIKKGHGG- 176
Query: 311 KCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVE 370
C I + K+ +K KD D+ DK + M +EV
Sbjct: 177 ----CGHVQPLIRKEGLKLFLVYKKSKDE-DEMQDKRM---------------FMPAEVH 216
Query: 371 ADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSR 430
KK+ ++ L E A I +++ P S+ V+
Sbjct: 217 NTLKKIPDSDLALLGL--------SEAYARPDWMILTVLPVPPPPVRPSIA----VDGGA 264
Query: 431 NKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLL 490
+ + Y G + MA++ EQ + + T + +L LQ++V
Sbjct: 265 MRSEDDLTYKLGDILKASMAVRRCEQEGAPAHVI------TDHEQL------LQFHVATY 312
Query: 491 MD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDS 547
MD A + + ++ L GK G +R N+MGKRV+F+ R+VIT DP L +D
Sbjct: 313 MDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDQ 372
Query: 548 IGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
+GVP A TLTYP VTP+N+ L+ +V NGP YPGA + + G + +
Sbjct: 373 VGVPRSIAMTLTYPERVTPYNIEYLQTLVRNGPREYPGARYVVRDTGERIDL 424
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 43/69 (62%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L +D +GVP A TLTYP VTP+N+ L+ +V NGP YPGA +
Sbjct: 356 FSARTVITGDPNLELDQVGVPRSIAMTLTYPERVTPYNIEYLQTLVRNGPREYPGARYVV 415
Query: 74 NEDGSVVRI 82
+ G + +
Sbjct: 416 RDTGERIDL 424
>gi|225216944|gb|ACN85238.1| putative RNA polymerase A(I) large subunit [Oryza minuta]
Length = 563
Score = 138 bits (348), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 147/271 (54%), Gaps = 28/271 (10%)
Query: 354 QIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIP----VLDTTKELIATDIMFIRSLV 409
+++ + +++ +EVE+ K LW E F L L+ +++ ++ F+++L+
Sbjct: 285 EMVASSGKKHLLTTEVESILKDLWKKEARFCMLLCDFQQNTLNVSEKRRGYEMFFLKNLL 344
Query: 410 VPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRG 469
V PN R + + VEH +N L + S +L+ I A D+L
Sbjct: 345 VAPNRFRSSTSSGLGIVEHPQNVLLSKVQESNLALQQSIAA---SNHMDVLRR------- 394
Query: 470 DTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRV 529
W +LQ +V++L D+ ++K +G++Q+L+ K G++RQ MMGKRV
Sbjct: 395 ----------WMDLQRSVNVLYDSSKGLSKNE--KNANGIRQLLEKKEGILRQKMMGKRV 442
Query: 530 NFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 589
N+A RSVI+PDPYL ++ IG+P FA LTYP VTPWN L++ + NG +++PGA
Sbjct: 443 NYACRSVISPDPYLAVNEIGIPPVFATRLTYPEKVTPWNARKLQEAINNGADIHPGATHY 502
Query: 590 QNEDGSVVRISSSQAVQRESLAKRLITPEGN 620
+ ++ ++ ++ ++ +R ++AK L G+
Sbjct: 503 R-DNNNMYKLQAAPP-KRRAIAKMLPASRGS 531
Score = 95.5 bits (236), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 73/135 (54%), Gaps = 9/135 (6%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
+ +Y D E+K++SV ++ ++ +PGGL D AMGP S D C +CG +
Sbjct: 16 IHFSFYYDDEIKRISVKQITKSDCVDAKNCPVPGGLLDPAMGPTSVT-DTCKSCGQQSIR 74
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLL--------FINQIK 235
C GH GHIEL P+ N L F ++ LL ++CF CHK + L + N+++
Sbjct: 75 CPGHFGHIELAKPLFNPLLFMSLKNLLHVTCFHCHKFRLNREQFSLSWSIQVDRYTNELE 134
Query: 236 LLDAGYVTQAKDLEE 250
LL G + AK+LE+
Sbjct: 135 LLVRGDIAHAKNLED 149
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 40/56 (71%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGA 69
+ RSVI+PDPYL ++ IG+P FA LTYP VTPWN L++ + NG +++PGA
Sbjct: 444 YACRSVISPDPYLAVNEIGIPPVFATRLTYPEKVTPWNARKLQEAINNGADIHPGA 499
>gi|281201615|gb|EFA75824.1| RNA polymerase I [Polysphondylium pallidum PN500]
Length = 1674
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/259 (33%), Positives = 138/259 (53%), Gaps = 29/259 (11%)
Query: 368 EVEADFKKLWTNE----HLFLKCLIPVLDTTKELI------ATDIMFIRSLVVPPNNLRP 417
E +++ +L+ E +L + PV + K + + + F+ +L V PN RP
Sbjct: 342 EFQSNIAELFKRECDILNLLFGSVRPVFKSKKSGVEFVKEASIESFFLTALPVIPNKYRP 401
Query: 418 LSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQ 477
++ EH N Y+ IL + + L+ + ++ DT N +
Sbjct: 402 CNVVGGKSTEHGANVHYKGILRA----------------NKLIRKQIESSESDTAKNMVT 445
Query: 478 NSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVI 537
N ELQ++++ + D + T GA G+KQ+L+ K G+ R+NMMGKRVN+A R+VI
Sbjct: 446 NVC-ELQFHINNIYDNSRAV--TVGATAPAGMKQVLEKKEGLFRKNMMGKRVNYAARTVI 502
Query: 538 TPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
+PD L + +GVP FAK LT+P PVTP N + VING +VYPGAN I++E G+++
Sbjct: 503 SPDISLETNEMGVPQLFAKKLTFPQPVTPVNYQEMAAAVINGADVYPGANFIEDELGNII 562
Query: 598 RISSSQAVQRESLAKRLIT 616
+ +R +L+K L+T
Sbjct: 563 NLEKETPEKRIALSKTLLT 581
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 72/125 (57%), Gaps = 1/125 (0%)
Query: 126 LKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCK 185
+YT E+++LS ++ P TF+ LG+ PGG YD A+G SE + C TC ++ C
Sbjct: 17 FAFYTADEIRKLSQKQITEPETFDLLGNPQPGGCYDKALG-TSEAFERCQTCNLHHVDCP 75
Query: 186 GHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQA 245
GH GHIEL VP N + F+ + LL+ +C CH+ + I +++LL +G + +A
Sbjct: 76 GHYGHIELAVPTYNPVMFKVLFKLLQNTCLNCHRFKHGKATIDSLIQELELLYSGEIVKA 135
Query: 246 KDLEE 250
K + E
Sbjct: 136 KQVRE 140
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 61/98 (62%), Gaps = 1/98 (1%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ R+VI+PD L + +GVP FAK LT+P PVTP N + VING +VYPGAN I+
Sbjct: 496 YAARTVISPDISLETNEMGVPQLFAKKLTFPQPVTPVNYQEMAAAVINGADVYPGANFIE 555
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQ-HRAIMK 110
+E G+++ + +R +L+K L+T Q H AI K
Sbjct: 556 DELGNIINLEKETPEKRIALSKTLLTVRPQAPHGAIKK 593
>gi|392592741|gb|EIW82067.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Coniophora puteana RWD-64-598 SS2]
Length = 1699
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 89/269 (33%), Positives = 135/269 (50%), Gaps = 17/269 (6%)
Query: 357 RKREQGYVMASEVEADFKKLWTNEHLFLKCL-------IPVLDTTKELIATDIMFIRSLV 409
R R + + E A ++L+ NE L P+ T L + D+ F+ +
Sbjct: 316 RGRNERLMPPEECRAHIRRLFKNESTLCSLLYGRHGPFAPLTPTGLSLASADMFFMEVVP 375
Query: 410 VPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRG 469
VPP RP EH +N+L +L S ++ ++ K+ + S A
Sbjct: 376 VPPTRFRPPVRMGETLFEHQQNELLSKVLNSSYRVRDANANVRAKDATKDQSRA------ 429
Query: 470 DTLNNKLQNSWHELQYNVDLLMDAKLNINKT-TGAHQIDGLKQMLDGKTGMIRQNMMGKR 528
L +S ++Q +V+ +D+ N G G+KQ L+ K G+ R++MMGKR
Sbjct: 430 ---EEYLWDSVVQMQIDVNSFIDSNKNPAPVRQGKLPPAGVKQGLEKKEGLFRKHMMGKR 486
Query: 529 VNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANM 588
VN+A RSVI+PD + + IG+P FA+ LTYP PVTP N LR+ VI GP YPGA M
Sbjct: 487 VNYAARSVISPDVNIEPNEIGIPPVFARKLTYPEPVTPINFHELRQYVIAGPKNYPGATM 546
Query: 589 IQNEDGSVVRISSSQAVQRESLAKRLITP 617
++ EDG + + QR ++A +L+TP
Sbjct: 547 VEYEDGHQQSLENMTIEQRTAIANQLLTP 575
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 74/121 (61%), Gaps = 1/121 (0%)
Query: 130 TDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
T Q+++++SV ++ +P+ + L GGLYD A+GP SER D C TC +Y C GH G
Sbjct: 20 TSQDIRRISVKQIVNPVLLDDLNRPNIGGLYDPALGP-SERQDICATCRLSYFTCPGHFG 78
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLE 249
HIELP+PV + LF + +L+ +C CHK +P T + +++LL+ G + A ++
Sbjct: 79 HIELPLPVFHPLFMVNAYNILRATCLFCHKFKLPRTVLCKYAAKLRLLEHGLLEAAHGID 138
Query: 250 E 250
+
Sbjct: 139 D 139
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 55/87 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PD + + IG+P FA+ LTYP PVTP N LR+ VI GP YPGA M++
Sbjct: 489 YAARSVISPDVNIEPNEIGIPPVFARKLTYPEPVTPINFHELRQYVIAGPKNYPGATMVE 548
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
EDG + + QR ++A +L+TP
Sbjct: 549 YEDGHQQSLENMTIEQRTAIANQLLTP 575
>gi|170090758|ref|XP_001876601.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648094|gb|EDR12337.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 1711
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/270 (31%), Positives = 138/270 (51%), Gaps = 11/270 (4%)
Query: 357 RKREQGYVMASEVEADFKKLWTNEHLFLKCLI-------PVLDTTKELIATDIMFIRSLV 409
R R + V E A ++L+ NE + L P+ + D+ F+ +
Sbjct: 319 RGRNERVVAPEECRAHLRRLFHNEAMMCSLLFGRHGPFAPISKDQLSFASADMFFLEVIP 378
Query: 410 VPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRG 469
V P RP + EH +N+L +L + ++ + + ++ Q +G R
Sbjct: 379 VAPTRFRPPAKLGEVLFEHPQNELLSKVLNTSYRMRDLSLDLRAASQK--TGNVDEGAR- 435
Query: 470 DTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAH-QIDGLKQMLDGKTGMIRQNMMGKR 528
TL + L + +LQ +V+ MD+ N + G+KQ L+ K G+ R++MMGKR
Sbjct: 436 KTLMSALLDRLVQLQVDVNSFMDSSKNPAPVRQSKLPPAGVKQGLEKKEGLFRKHMMGKR 495
Query: 529 VNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANM 588
VN+A RSVI+PD + + IG+P FA+ LT+P PVTP N LR+ VI GP+ YPGA +
Sbjct: 496 VNYAARSVISPDVNIEPNEIGIPPVFARKLTFPEPVTPANFHELRQRVITGPHGYPGATL 555
Query: 589 IQNEDGSVVRISSSQAVQRESLAKRLITPE 618
++ EDG + QR ++A +L+TP+
Sbjct: 556 VEYEDGHQQSLDKLTVEQRTAIANQLLTPQ 585
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 76/127 (59%), Gaps = 1/127 (0%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
+ + T Q+++++SV ++ +P+ + L GGLYD ++GP S+R D C TC Y
Sbjct: 14 VSFSFLTSQDIRRISVKQIVNPVLLDDLNRPNIGGLYDPSLGP-SDRSDICATCHLTYFT 72
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVT 243
C GH GHIELP PV + LF ++ LL+ +C CH+ + T F+ +++LL+ G +
Sbjct: 73 CPGHFGHIELPAPVFHPLFMTNMYNLLRGTCMFCHRFKMTRTVLWKFMAKLRLLERGLLD 132
Query: 244 QAKDLEE 250
A+ +++
Sbjct: 133 AAQGVDD 139
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PD + + IG+P FA+ LT+P PVTP N LR+ VI GP+ YPGA +++
Sbjct: 498 YAARSVISPDVNIEPNEIGIPPVFARKLTFPEPVTPANFHELRQRVITGPHGYPGATLVE 557
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKIITR 116
EDG + QR ++A +L+TP++ R + + TR
Sbjct: 558 YEDGHQQSLDKLTVEQRTAIANQLLTPQEGD-RGSGRRGLYTR 599
>gi|336373803|gb|EGO02141.1| hypothetical protein SERLA73DRAFT_86356 [Serpula lacrymans var.
lacrymans S7.3]
Length = 1688
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 87/272 (31%), Positives = 138/272 (50%), Gaps = 11/272 (4%)
Query: 357 RKREQGYVMASEVEADFKKLWTNEHLFLKCLI-------PVLDTTKELIATDIMFIRSLV 409
R R + + E A ++L+ E + L P+ + D+ F+ +
Sbjct: 298 RGRNERVMAPEECRAHLRRLFQKEAIICSLLFGRHGPFAPISREGLSFASADMFFMEVVP 357
Query: 410 VPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRG 469
V P RP + EH +N+L +L++ L+ + ++ SEA + R
Sbjct: 358 VSPTRFRPPAKMGETLFEHPQNELLSKVLHTSYRLRDLNADLRAATSKS--SEADESSRR 415
Query: 470 DTLNNKLQNSWHELQYNVDLLMDAKLN-INKTTGAHQIDGLKQMLDGKTGMIRQNMMGKR 528
L L+ + +LQ +V+ MD+ N G G+KQ L+ K G+ R++MMGKR
Sbjct: 416 KLLGTLLE-TLIQLQADVNSFMDSSKNPAPMRQGKLPPAGVKQSLEKKEGLFRKHMMGKR 474
Query: 529 VNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANM 588
VN+A RSVI+PD + + IG+P FA+ LT+P PVTP N LR+ VI GP YPGA +
Sbjct: 475 VNYAARSVISPDVNIEPNEIGIPPVFARKLTFPEPVTPANFHELRQRVITGPKGYPGATI 534
Query: 589 IQNEDGSVVRISSSQAVQRESLAKRLITPEGN 620
++ EDG + QR ++A +L+TP+G+
Sbjct: 535 VEFEDGHQQSLEKLSVEQRTAIANQLLTPQGS 566
Score = 99.0 bits (245), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 75/127 (59%), Gaps = 1/127 (0%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
+ + T ++++++SV ++ +P+ + L GGLYD A+GP S+R D C TC Y
Sbjct: 14 ISFSFLTTEDIRRISVKQILNPVLLDDLNRPNIGGLYDPALGP-SDRQDICATCRLTYFT 72
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVT 243
C GH GHIELP P+ + LF ++ +L+ +C CHK I + +I + +LL+ G +
Sbjct: 73 CPGHFGHIELPAPLYHPLFMANLYNILRGTCLFCHKFKISRSVICKYIAKFRLLERGLLG 132
Query: 244 QAKDLEE 250
A+ ++E
Sbjct: 133 AAQGVDE 139
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 60/103 (58%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PD + + IG+P FA+ LT+P PVTP N LR+ VI GP YPGA +++
Sbjct: 477 YAARSVISPDVNIEPNEIGIPPVFARKLTFPEPVTPANFHELRQRVITGPKGYPGATIVE 536
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKIITR 116
EDG + QR ++A +L+TP+ + + + TR
Sbjct: 537 FEDGHQQSLEKLSVEQRTAIANQLLTPQGSNNNGSGRSGLSTR 579
>gi|115459150|ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group]
gi|38346223|emb|CAE02045.2| OJ990528_30.3 [Oryza sativa Japonica Group]
gi|38347455|emb|CAD41360.2| OSJNBa0076N16.24 [Oryza sativa Japonica Group]
gi|113564746|dbj|BAF15089.1| Os04g0492300 [Oryza sativa Japonica Group]
gi|116310339|emb|CAH67354.1| OSIGBa0130B08.14 [Oryza sativa Indica Group]
gi|116310740|emb|CAH67535.1| H0425E08.3 [Oryza sativa Indica Group]
gi|215768005|dbj|BAH00234.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218195112|gb|EEC77539.1| hypothetical protein OsI_16437 [Oryza sativa Indica Group]
Length = 1383
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 123/483 (25%), Positives = 218/483 (45%), Gaps = 104/483 (21%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
++ ++ EV+Q + V+V++ +N +P GL D MG ++ G+ C+TC ++ +
Sbjct: 27 IRFSMFSGNEVRQSAEVQVWNSRIYNHEMKPVPNGLLDTRMGAANKLGE-CSTCHGSFAE 85
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVT 243
C GH G+++L +PV N FF + +LK C C ++ + +L F+ +++
Sbjct: 86 CPGHFGYLKLALPVFNVGFFNCILDVLKCICKSCSRVLLMEKDRLEFLKKMR-------- 137
Query: 244 QAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQV 303
N + P Q +SA + +V
Sbjct: 138 -------------NPKADPLQ-------------------------------KSAIMKKV 153
Query: 304 LSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGY 363
+ +C +C IN ++ + R + I + ++LD S + + + K+E+
Sbjct: 154 RDKCKLSRCPWCGF-INGVAKKGRAGL----IILHDCSKTLDGSTEELRDALSHKKEKLS 208
Query: 364 VMASE------VEADFKKLWTNEHLFLKC-LIPVLDTTKELIATDIMFIRSLVVPPNNLR 416
+ A V + FK++ T+E C L+ + D ++LI T+I VPP +R
Sbjct: 209 ISAVRMLDPAIVLSLFKRM-TDE----DCELLNLGDRPEKLIVTEI------AVPPVPIR 257
Query: 417 PLSMEQMPPVEHSRNKLYQSILYSCGSLK---SVIMAMKNKEQSD-LLSEALKGIRGDTL 472
P S+ + G + S+ + +K+ ++ +L E L+ G +
Sbjct: 258 P------------------SVFVAGGRMSNEDSITVILKSIANTNSILKENLQ-TGGQFM 298
Query: 473 NNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFA 532
K + W LQ V +++ + Q GL Q L GKTG R N+ GKR +
Sbjct: 299 --KCFDCWQHLQLQVVEYINSDA---PSLPESQHRGLVQRLKGKTGRFRGNLSGKRTEYT 353
Query: 533 GRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
GR+VI+PDP L I + +P+ A+ LTYP V+ +N+ LR+ + NGP+ +PGAN I
Sbjct: 354 GRTVISPDPNLRITEVAIPILMARVLTYPERVSYYNIEKLRQCIRNGPHKHPGANFIIQP 413
Query: 593 DGS 595
DG+
Sbjct: 414 DGT 416
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 43/65 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ R+VI+PDP L I + +P+ A+ LTYP V+ +N+ LR+ + NGP+ +PGAN I
Sbjct: 352 YTGRTVISPDPNLRITEVAIPILMARVLTYPERVSYYNIEKLRQCIRNGPHKHPGANFII 411
Query: 74 NEDGS 78
DG+
Sbjct: 412 QPDGT 416
>gi|336386619|gb|EGO27765.1| hypothetical protein SERLADRAFT_446992 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1710
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/272 (31%), Positives = 138/272 (50%), Gaps = 11/272 (4%)
Query: 357 RKREQGYVMASEVEADFKKLWTNEHLFLKCLI-------PVLDTTKELIATDIMFIRSLV 409
R R + + E A ++L+ E + L P+ + D+ F+ +
Sbjct: 325 RGRNERVMAPEECRAHLRRLFQKEAIICSLLFGRHGPFAPISREGLSFASADMFFMEVVP 384
Query: 410 VPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRG 469
V P RP + EH +N+L +L++ L+ + ++ SEA + R
Sbjct: 385 VSPTRFRPPAKMGETLFEHPQNELLSKVLHTSYRLRDLNADLRAATSKS--SEADESSRR 442
Query: 470 DTLNNKLQNSWHELQYNVDLLMDAKLN-INKTTGAHQIDGLKQMLDGKTGMIRQNMMGKR 528
L L+ + +LQ +V+ MD+ N G G+KQ L+ K G+ R++MMGKR
Sbjct: 443 KLLGTLLE-TLIQLQADVNSFMDSSKNPAPMRQGKLPPAGVKQSLEKKEGLFRKHMMGKR 501
Query: 529 VNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANM 588
VN+A RSVI+PD + + IG+P FA+ LT+P PVTP N LR+ VI GP YPGA +
Sbjct: 502 VNYAARSVISPDVNIEPNEIGIPPVFARKLTFPEPVTPANFHELRQRVITGPKGYPGATI 561
Query: 589 IQNEDGSVVRISSSQAVQRESLAKRLITPEGN 620
++ EDG + QR ++A +L+TP+G+
Sbjct: 562 VEFEDGHQQSLEKLSVEQRTAIANQLLTPQGS 593
Score = 99.0 bits (245), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 75/127 (59%), Gaps = 1/127 (0%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
+ + T ++++++SV ++ +P+ + L GGLYD A+GP S+R D C TC Y
Sbjct: 14 ISFSFLTTEDIRRISVKQILNPVLLDDLNRPNIGGLYDPALGP-SDRQDICATCRLTYFT 72
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVT 243
C GH GHIELP P+ + LF ++ +L+ +C CHK I + +I + +LL+ G +
Sbjct: 73 CPGHFGHIELPAPLYHPLFMANLYNILRGTCLFCHKFKISRSVICKYIAKFRLLERGLLG 132
Query: 244 QAKDLEE 250
A+ ++E
Sbjct: 133 AAQGVDE 139
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 60/103 (58%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PD + + IG+P FA+ LT+P PVTP N LR+ VI GP YPGA +++
Sbjct: 504 YAARSVISPDVNIEPNEIGIPPVFARKLTFPEPVTPANFHELRQRVITGPKGYPGATIVE 563
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKIITR 116
EDG + QR ++A +L+TP+ + + + TR
Sbjct: 564 FEDGHQQSLEKLSVEQRTAIANQLLTPQGSNNNGSGRSGLSTR 606
>gi|429191196|ref|YP_007176874.1| DNA-directed RNA polymerase subunit A'' [Natronobacterium gregoryi
SP2]
gi|448326613|ref|ZP_21515962.1| DNA-directed RNA polymerase subunit A' [Natronobacterium gregoryi
SP2]
gi|429135414|gb|AFZ72425.1| DNA-directed RNA polymerase subunit A'' [Natronobacterium gregoryi
SP2]
gi|445610905|gb|ELY64670.1| DNA-directed RNA polymerase subunit A' [Natronobacterium gregoryi
SP2]
Length = 974
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 128/509 (25%), Positives = 217/509 (42%), Gaps = 98/509 (19%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHI 191
+E +++S K+ + T++ G I GL D +G I + G C TCG + C GH GHI
Sbjct: 20 EEYREMSATKIITADTYDDDGFPIDMGLMDPRLGVI-DPGLECKTCGKHSGSCNGHFGHI 78
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLF---INQIKLL--DAGYVTQAK 246
EL PVI+ F + ++ LL+ +C C ++ + + F I++ + L D VT+A
Sbjct: 79 ELAAPVIHVGFTKLIRRLLRGTCRECSRLLLTEDERAEFHGQIDEARKLSRDLNDVTKAA 138
Query: 247 --------------DLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGG 292
+++ + +E+ + Q V L + Q I A I D G
Sbjct: 139 IRQARKKDRCPHCGEIQYDIDHEKPTTYYEVQQV-LTSEYSQRIAAAMQGIDD------G 191
Query: 293 EELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSS 352
E++ +A+ + R + Q++ I K+ ID
Sbjct: 192 EQMSPDELAEETDIDLGRVNEILSGSFRPRESQRKAIEKALDID---------------- 235
Query: 353 NQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPP 412
+ + + +M S++ F+ + + I VL + + M + L VPP
Sbjct: 236 ---LTEEDTNKLMPSDIRDWFEAIPDED-------IEVLGIDPDRSRPEWMILTVLPVPP 285
Query: 413 NNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDT- 471
RP S+ + + + DL + + IR +
Sbjct: 286 VTARP----------------------------SITLDNGQRSEDDLTHKLVDIIRINQR 317
Query: 472 -LNNK--------LQNSWHELQYNVDLLMDAKLNINKTTGAHQIDG-----LKQMLDGKT 517
+ N+ +++ W LQY+V MD + I+ T A G L Q L GK
Sbjct: 318 FMENREAGAPQLIIEDLWELLQYHVTTFMDNE--ISGTPPARHRSGRPLKTLSQRLKGKE 375
Query: 518 GMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVI 577
G R ++ GKRVNF+ R+VI+PDP L+++ +GVP AK +T + VT N+ R+ V
Sbjct: 376 GRFRGSLSGKRVNFSARTVISPDPTLSLNEVGVPDRVAKEMTQTMNVTERNLEKARRFVS 435
Query: 578 NGPNVYPGANMIQNEDGSVVRISSSQAVQ 606
NGP +PGAN ++ DG ++++ Q
Sbjct: 436 NGPEGHPGANYVRRPDGRRLKVTEKNCEQ 464
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 46/76 (60%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L+++ +GVP AK +T + VT N+ R+ V NGP +PGAN ++
Sbjct: 389 FSARTVISPDPTLSLNEVGVPDRVAKEMTQTMNVTERNLEKARRFVSNGPEGHPGANYVR 448
Query: 74 NEDGSVVRISSSQAVQ 89
DG ++++ Q
Sbjct: 449 RPDGRRLKVTEKNCEQ 464
>gi|219114393|ref|XP_002176367.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217402613|gb|EEC42603.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 1674
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/260 (31%), Positives = 134/260 (51%), Gaps = 24/260 (9%)
Query: 358 KREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELI-ATDIMFIRSLVVPPNNLR 416
K+ ++ A EV+A K+ W + L C+ +++ L + F++++ VPP+ R
Sbjct: 320 KKSDMFMHAGEVQAQIKRTWQTDPFLLHCVFG--GSSQSLQDGYQLFFLQAVPVPPSRFR 377
Query: 417 PLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKL 476
P VEHS+ ++ S++ A S+ + G
Sbjct: 378 PAMYLNGMAVEHSQTSYLSQMIRFNESIRESFAA----------SDEPRAYSG------- 420
Query: 477 QNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSV 536
W +LQ V+ MD+ + + T G+KQ+L+ K G+ R+NMMGKRV++A RSV
Sbjct: 421 ---WIDLQTAVNCFMDSAKDPSATPTNLVAPGIKQILERKEGLFRKNMMGKRVDYACRSV 477
Query: 537 ITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSV 596
I+PDPY+ + IG+P FA LTYP PVT NV +R +V GP+ YPGA ++ + G
Sbjct: 478 ISPDPYIGTNEIGLPRYFATVLTYPTPVTDLNVKEMRALVERGPHNYPGARWVELQ-GKR 536
Query: 597 VRISSSQAVQRESLAKRLIT 616
V + +RE++A +L+T
Sbjct: 537 VDLGKMNTQKREAIAAQLLT 556
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 77/144 (53%), Gaps = 3/144 (2%)
Query: 110 KEKIITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISE 169
K I+ RQ E ++ +Y D +V+ SVV++ S F+ +P GLYD+ +GP+ +
Sbjct: 11 KSAIVRRQ---IEKVQFGFYNDDDVRARSVVEITSSQAFDPTNSPLPNGLYDVRLGPLKD 67
Query: 170 RGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLL 229
PC TC + C GH GHIEL VPV + L F D+ LL++ CF CHK+ P+ +
Sbjct: 68 SEPPCPTCALRASHCPGHFGHIELAVPVYHPLLFPDLLQLLRIKCFACHKLKAPSRTLAT 127
Query: 230 FINQIKLLDAGYVTQAKDLEETLF 253
+ LL +T+ L+ L
Sbjct: 128 LRAKFHLLYRHDLTRLTALDRELL 151
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDPY+ + IG+P FA LTYP PVT NV +R +V GP+ YPGA ++
Sbjct: 472 YACRSVISPDPYIGTNEIGLPRYFATVLTYPTPVTDLNVKEMRALVERGPHNYPGARWVE 531
Query: 74 NEDGSVVRISSSQAVQRESLAKRLIT 99
+ G V + +RE++A +L+T
Sbjct: 532 LQ-GKRVDLGKMNTQKREAIAAQLLT 556
>gi|331224168|ref|XP_003324756.1| DNA-directed RNA polymerase I subunit A1 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|309303746|gb|EFP80337.1| DNA-directed RNA polymerase I subunit A1 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 1887
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/278 (33%), Positives = 145/278 (52%), Gaps = 16/278 (5%)
Query: 358 KREQGYVMASEVEADFKKLWTNE----HLFLKCLIPVLDTTKELI--ATDIMFIRSLVVP 411
K+ + ++A E A +L+ NE L P L + +E + D+ F+ + VP
Sbjct: 466 KQTERMMLAQEARAHLNQLFINEPEICGLLYGSRFPALQSHREQAPASADMFFLEVVPVP 525
Query: 412 PNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSV-----IMAMKNKEQSDLLS---EA 463
P+ RP ++ +E +N+L IL L+ + + + K + DL S EA
Sbjct: 526 PSRFRPAAIMGGMTLESPQNQLLTQILTQTIKLRDLNSDLATTSKRIKVEKDLDSSEVEA 585
Query: 464 LKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLN-INKTTGAHQIDGLKQMLDGKTGMIRQ 522
L+ R L ++ + +Q V+ LMD+ N N G G+KQ+L+ K G+ R
Sbjct: 586 LQTTRA-KLYRQVLEACVGMQVAVNSLMDSTKNPTNMGPGKLPPQGIKQLLEKKDGLFRM 644
Query: 523 NMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNV 582
NMMGKRVN+A RSVI+PD + + IGVP FAK LT+P VT N + ++V NGPN
Sbjct: 645 NMMGKRVNYAARSVISPDINIETNEIGVPPVFAKKLTFPEFVTAHNYEQMHRLVCNGPNK 704
Query: 583 YPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPEGN 620
+PGA IQ+EDG+++ + R +LA L+ G+
Sbjct: 705 HPGAVYIQDEDGTMISLDKMDEEGRRALANTLLHSNGD 742
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 92/217 (42%), Gaps = 37/217 (17%)
Query: 133 EVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIE 192
+V+ +SV+++ +P ++ GLYD +GP+ + D C TC T+C GH GHIE
Sbjct: 102 DVRSISVLQITNPSLLDNNNVPSTAGLYDPRLGPLDWQ-DICWTCHQLNTQCPGHFGHIE 160
Query: 193 LPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGY----------- 241
L VPV + LF LL+ +CF CH L + ++KLL+ G
Sbjct: 161 LNVPVFHPLFMTHAYQLLRSTCFYCHHFLCSQLVILRYTAKLKLLEHGLPIESDAIDDFP 220
Query: 242 ----VTQAKDLEETLFNEEN-----------LRLHPAQLVQLV----DSHVQSILAHGTK 282
+T K E ++EN L + + + V D SI A
Sbjct: 221 TSQPITPGKRAAEEGADQENEDPEADQAEFDLNFYKTSISKFVAECLDRKKSSIKAR--- 277
Query: 283 ICDINDYKGGE--ELRSAFVAQVLSRHVKRKCIFCAT 317
C DYK G + R ++++ K+KC C
Sbjct: 278 -CSGEDYKIGMCFDRRRQVISELFKLLPKKKCERCGA 313
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 52/85 (61%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PD + + IGVP FAK LT+P VT N + ++V NGPN +PGA IQ
Sbjct: 653 YAARSVISPDINIETNEIGVPPVFAKKLTFPEFVTAHNYEQMHRLVCNGPNKHPGAVYIQ 712
Query: 74 NEDGSVVRISSSQAVQRESLAKRLI 98
+EDG+++ + R +LA L+
Sbjct: 713 DEDGTMISLDKMDEEGRRALANTLL 737
>gi|302696833|ref|XP_003038095.1| hypothetical protein SCHCODRAFT_12868 [Schizophyllum commune H4-8]
gi|300111792|gb|EFJ03193.1| hypothetical protein SCHCODRAFT_12868 [Schizophyllum commune H4-8]
Length = 1717
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/273 (31%), Positives = 141/273 (51%), Gaps = 17/273 (6%)
Query: 357 RKREQGYVMASEVEADFKKLWTNEHLFLKCLIP---VLDTTKELIATDIMFIRSLVVPPN 413
R R + + E A ++L+ E + + + + + D+ F+ + V P
Sbjct: 322 RGRNERVMAPEECRAHLRRLFRKEPVMCALIYGRHGACAPSTPIASADMFFLEVISVAPT 381
Query: 414 NLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAM-----KNKEQSDLLSEALKGIR 468
RP + EH +N+L +L +C L+ + + + K E +D + G+
Sbjct: 382 RFRPPAKMNDTLFEHPQNELLAKVLNTCYRLRDLNVNLRQASEKGAEFNDTERRRVMGM- 440
Query: 469 GDTLNNKLQNSWHELQYNVDLLMDAKLN-INKTTGAHQIDGLKQMLDGKTGMIRQNMMGK 527
L + +LQ +V+ MD+ N G G+KQ L+ K G+ R++MMGK
Sbjct: 441 -------LLEALVQLQVDVNSFMDSSKNPAPMRQGKLPPPGVKQGLERKEGLFRKHMMGK 493
Query: 528 RVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGAN 587
RVN+A RSVI+PD + + IG+P FA+ LT+P PVT NV LR++VINGP +PGA
Sbjct: 494 RVNYAARSVISPDANIEPNEIGIPPVFARKLTFPEPVTHHNVNALRQLVINGPRNHPGAA 553
Query: 588 MIQNEDGSVVRISSSQAVQRESLAKRLITPEGN 620
+I++EDG + QR +LA +L+TP+G+
Sbjct: 554 IIEHEDGHKQSLDKLTVEQRTALANQLMTPQGD 586
Score = 102 bits (254), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 76/127 (59%), Gaps = 1/127 (0%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
+ + T +VK++SV ++ +P+ + L GGLYD A+GP SER D C TC +Y
Sbjct: 14 ISFSFLTTDDVKRISVKQIVNPVLLDDLNRPNNGGLYDPALGP-SERNDICATCRLSYFT 72
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVT 243
C GH GHIELP PV + LF ++ LL+ +C CH+ + T ++ ++KLL+ G +
Sbjct: 73 CPGHFGHIELPAPVFHPLFMSNMLNLLRGTCLFCHQFKMSRTVLWKYMAKLKLLERGLLD 132
Query: 244 QAKDLEE 250
A+ +++
Sbjct: 133 AAQGVDD 139
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 59/92 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PD + + IG+P FA+ LT+P PVT NV LR++VINGP +PGA +I+
Sbjct: 497 YAARSVISPDANIEPNEIGIPPVFARKLTFPEPVTHHNVNALRQLVINGPRNHPGAAIIE 556
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQH 105
+EDG + QR +LA +L+TP+ H
Sbjct: 557 HEDGHKQSLDKLTVEQRTALANQLMTPQGDTH 588
>gi|412985554|emb|CCO19000.1| predicted protein [Bathycoccus prasinos]
Length = 1879
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 89/267 (33%), Positives = 136/267 (50%), Gaps = 31/267 (11%)
Query: 363 YVMASEVEADFKKLWTNEHLFLKCLIPV--------LDTTKELIATDIMFIRSLVVPPNN 414
YV E ++LW NE + + L T ++ + F ++++VPP
Sbjct: 398 YVTPIEAREILRRLWGNEFEWCARVWCANGRDQSSDLTTKRQASNPNRFFCQTILVPPPK 457
Query: 415 LRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNN 474
LRP S EH +N +I+ + SL + + A + +R
Sbjct: 458 LRPPSKMGDMVFEHPQNTHLCAIIQANLSLTELFRTPPTVPEP-PEVRASRAVR------ 510
Query: 475 KLQNSWHELQYNVDLLMDAKLNINKTTGAHQID-----GLKQMLDGKTGMIRQNMMGKRV 529
+W +Q V+ LMDA T A +I G++Q L+ K G+ R NMMGKRV
Sbjct: 511 ----AWLVIQGGVNRLMDA-------TKADRIQDRVGIGIRQQLEKKQGLFRMNMMGKRV 559
Query: 530 NFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 589
N+A RSVI+PDPYL IGVP FAKTLT+P VTP NV L+R++V G + +PGAN +
Sbjct: 560 NYAARSVISPDPYLGTGEIGVPPVFAKTLTFPELVTPHNVELMRELVERGADEHPGANAV 619
Query: 590 QNEDGSVVRISSSQAVQRESLAKRLIT 616
++E G ++ ++ +R ++AK L++
Sbjct: 620 EDERGRIINLARFSKEKRRAIAKTLLS 646
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 78/136 (57%), Gaps = 1/136 (0%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
+ +Y +E +++SV +V +P+ F++L + + GLYD A GPI + G C+TCG +
Sbjct: 45 VSFSFYDPKEAREISVKRVTNPVLFDALNNPVVDGLYDPAFGPIEQFG-VCSTCGLSQHH 103
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVT 243
C GH GHI+L VPV + L F V +L+ +C CHK + +F ++ L+D G +
Sbjct: 104 CPGHFGHIDLVVPVYHPLLFPTVTKVLRCACLNCHKFKMHTERVNMFRERLDLIDRGELE 163
Query: 244 QAKDLEETLFNEENLR 259
A D+ + ++ +R
Sbjct: 164 SAADVSQWKLSKSTMR 179
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 59/86 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDPYL IGVP FAKTLT+P VTP NV L+R++V G + +PGAN ++
Sbjct: 561 YAARSVISPDPYLGTGEIGVPPVFAKTLTFPELVTPHNVELMRELVERGADEHPGANAVE 620
Query: 74 NEDGSVVRISSSQAVQRESLAKRLIT 99
+E G ++ ++ +R ++AK L++
Sbjct: 621 DERGRIINLARFSKEKRRAIAKTLLS 646
>gi|440795219|gb|ELR16355.1| RNA polymerase Rpb1 protein [Acanthamoeba castellanii str. Neff]
Length = 1699
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 130/257 (50%), Gaps = 27/257 (10%)
Query: 363 YVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKEL---IATDIM--FIRSLVVPPNNLRP 417
Y+ SEV KKL+ E ++ + + L A D M F+ ++ VPP+ RP
Sbjct: 538 YMAPSEVLDHIKKLYAAEEKIMRLAFGSIRLSHNLPAHRAADPMVYFLETVAVPPSRFRP 597
Query: 418 LSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQ 477
L+M ++H +N I+ L + K +G+ +
Sbjct: 598 LNMVNGMAMDHPQNIYLARIMTYNDQLLTA-----------------KTDKGEMTVEQRV 640
Query: 478 NSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVI 537
W +Q V+ L D+ N GA G+KQ+L+ K G+ R++MMGKRVNFA RSVI
Sbjct: 641 ELWISMQKTVNALFDSS---NAGVGAAA--GIKQLLEKKEGLFRKHMMGKRVNFAARSVI 695
Query: 538 TPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
+PDP+L + IG+PL FA LT+P PVT N +++ V+NGP YPGAN + +E+G
Sbjct: 696 SPDPFLQTNEIGIPLVFAMKLTFPEPVTETNFREMQQAVMNGPGKYPGANAVIDENGHTT 755
Query: 598 RISSSQAVQRESLAKRL 614
+ S R +L+K L
Sbjct: 756 VLRESDEAGRLALSKTL 772
Score = 112 bits (280), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 76/122 (62%), Gaps = 1/122 (0%)
Query: 128 YYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGH 187
+YT +E+K++SV ++ + + + LG+ IPGGLYD AMGPI+ R + C TCG C GH
Sbjct: 196 FYTAEEIKKISVKRILTTASLDVLGNPIPGGLYDPAMGPIN-RFETCATCGLGERDCPGH 254
Query: 188 IGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKD 247
IGHIEL VPV N + F+ + +L+ CF CH++ + + LLD G + +A D
Sbjct: 255 IGHIELAVPVYNPMMFKQLVRILRAKCFECHQLRLSRDKVNRLAKSLSLLDEGKIVEALD 314
Query: 248 LE 249
++
Sbjct: 315 VD 316
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 53/84 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP+L + IG+PL FA LT+P PVT N +++ V+NGP YPGAN +
Sbjct: 689 FAARSVISPDPFLQTNEIGIPLVFAMKLTFPEPVTETNFREMQQAVMNGPGKYPGANAVI 748
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+E+G + S R +L+K L
Sbjct: 749 DENGHTTVLRESDEAGRLALSKTL 772
>gi|147815227|emb|CAN70028.1| hypothetical protein VITISV_029145 [Vitis vinifera]
Length = 1350
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 135/253 (53%), Gaps = 32/253 (12%)
Query: 374 KKLWTNEHLFLKCLIPVLD----TTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHS 429
++LW NE + +L + + F+ +++VPP RP S Q+ +EH
Sbjct: 422 ERLWENEAELCSFISDILQERLGASGNKAGYSMFFLETILVPPIKFRPPSKGQISVMEHP 481
Query: 430 RNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDL 489
+ L +L + +L + N E+S ++S W +LQ ++++
Sbjct: 482 QTVLLGKVLQANIALGNA--HANNSERSKIISR-----------------WMDLQQSINV 522
Query: 490 LMDAKLNINKTTGAHQID---GLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNID 546
L D K G Q D G+ Q+L+ K G+ RQ MMGKRVNFA RSVI+PDPYL ++
Sbjct: 523 LFDGKT----AAGQGQRDTGSGICQLLEKKEGVFRQKMMGKRVNFACRSVISPDPYLAVN 578
Query: 547 SIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQ 606
IG+P FA LTYP VTPWNV LR +INGP ++PGA ++ S V+++ ++ +
Sbjct: 579 EIGIPPYFALRLTYPEKVTPWNVVKLRDAIINGPEIHPGATHYVDK-LSTVKLAVNKKM- 636
Query: 607 RESLAKRLITPEG 619
R S++++L + G
Sbjct: 637 RISISRKLPSSRG 649
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 41/56 (73%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGA 69
F RSVI+PDPYL ++ IG+P FA LTYP VTPWNV LR +INGP ++PGA
Sbjct: 563 FACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNVVKLRDAIINGPEIHPGA 618
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISE 169
E +K ++TD+EV++ S K+ SP+ +S+ +PGGLYD A+G I E
Sbjct: 106 EAVKFSFFTDEEVRKYSFKKITSPLMLDSVQRPVPGGLYDPALGSIDE 153
>gi|222629113|gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japonica Group]
Length = 1321
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 121/483 (25%), Positives = 217/483 (44%), Gaps = 103/483 (21%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
++ ++ EV+Q + V+V++ +N +P GL D MG ++ G+ C+TC ++ +
Sbjct: 27 IRFSMFSGNEVRQSAEVQVWNSRIYNHEMKPVPNGLLDTRMGAANKLGE-CSTCHGSFAE 85
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVT 243
C GH G+++L +PV N FF + +LK C C ++ + +L F+ +++
Sbjct: 86 CPGHFGYLKLALPVFNVGFFNCILDVLKCICKSCSRVLLMEKDRLEFLKKMR-------- 137
Query: 244 QAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQV 303
N + P Q +SA + +V
Sbjct: 138 -------------NPKADPLQ-------------------------------KSAIMKKV 153
Query: 304 LSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGY 363
+ +C +C +++ + R + I + ++LD S + + + K+E+
Sbjct: 154 RDKCKLSRCPWCGFINGSVAKKGRAGL----IILHDCSKTLDGSTEELRDALSHKKEKLS 209
Query: 364 VMASE------VEADFKKLWTNEHLFLKC-LIPVLDTTKELIATDIMFIRSLVVPPNNLR 416
+ A V + FK++ T+E C L+ + D ++LI T+I VPP +R
Sbjct: 210 ISAVRMLDPAIVLSLFKRM-TDE----DCELLNLGDRPEKLIVTEI------AVPPVPIR 258
Query: 417 PLSMEQMPPVEHSRNKLYQSILYSCGSLK---SVIMAMKNKEQSD-LLSEALKGIRGDTL 472
P S+ + G + S+ + +K+ ++ +L E L+ G +
Sbjct: 259 P------------------SVFVAGGRMSNEDSITVILKSIANTNSILKENLQ-TGGQFM 299
Query: 473 NNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFA 532
K + W LQ V +++ + Q GL Q L GKTG R N+ GKR +
Sbjct: 300 --KCFDCWQHLQLQVVEYINSDA---PSLPESQHRGLVQRLKGKTGRFRGNLSGKRTEYT 354
Query: 533 GRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
GR+VI+PDP L I + +P+ A+ LTYP V+ +N+ LR+ + NGP+ +PGAN I
Sbjct: 355 GRTVISPDPNLRITEVAIPILMARVLTYPERVSYYNIEKLRQCIRNGPHKHPGANFIIQP 414
Query: 593 DGS 595
DG+
Sbjct: 415 DGT 417
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 43/65 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ R+VI+PDP L I + +P+ A+ LTYP V+ +N+ LR+ + NGP+ +PGAN I
Sbjct: 353 YTGRTVISPDPNLRITEVAIPILMARVLTYPERVSYYNIEKLRQCIRNGPHKHPGANFII 412
Query: 74 NEDGS 78
DG+
Sbjct: 413 QPDGT 417
>gi|428185541|gb|EKX54393.1| hypothetical protein GUITHDRAFT_160655 [Guillardia theta CCMP2712]
Length = 1521
Score = 135 bits (341), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 130/216 (60%), Gaps = 16/216 (7%)
Query: 400 TDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDL 459
++ F+++L+V PN RP P+ H + ++ L C LKS+++ +N++ +L
Sbjct: 380 ANMFFLQTLLVAPNRFRP-------PI-HLGEQQFEHPLNVC--LKSIMV--ENEQILEL 427
Query: 460 LSEALKGIRGDTLNNK-LQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTG 518
L +L+++ L W +Q V+ ++D+ G + G++Q L+ K G
Sbjct: 428 LDSNNGNKTSSSLDSEVLLRKWSRMQNFVNQMIDSTKAEKAQEG---VKGVRQELERKEG 484
Query: 519 MIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVIN 578
++R NMMGKRVNFA RSVI+PDP++ +G+P FAK L++P PV +NV LR+ V+N
Sbjct: 485 LMRMNMMGKRVNFACRSVISPDPFMTTGQVGIPEVFAKRLSWPEPVNQYNVKRLRQAVLN 544
Query: 579 GPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRL 614
GP+V+PGAN + +E G+ + +S QA R ++AK+L
Sbjct: 545 GPHVWPGANYVIDERGNKIDLSKKQAQFRTAMAKQL 580
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 59/84 (70%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP++ +G+P FAK L++P PV +NV LR+ V+NGP+V+PGAN +
Sbjct: 497 FACRSVISPDPFMTTGQVGIPEVFAKRLSWPEPVNQYNVKRLRQAVLNGPHVWPGANYVI 556
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+E G+ + +S QA R ++AK+L
Sbjct: 557 DERGNKIDLSKKQAQFRTAMAKQL 580
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 70/134 (52%), Gaps = 10/134 (7%)
Query: 128 YYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDP---CTTCGNNYTKC 184
Y+ +E + LSV ++ +TF+ LG + GLYD ++GPI DP C TC +Y C
Sbjct: 21 YFKPEEQRALSVKRITRSVTFDRLGRSQREGLYDPSLGPI----DPLERCETCSQSYDDC 76
Query: 185 KGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQ 244
GH GHI+L +P + L F ++ LL+ CF C+ + + F + + G + +
Sbjct: 77 PGHYGHIDLSLPTFHPLLFNELYKLLRCCCFQCNSLRMNEEQVAFFTCVLSKIREGKLAE 136
Query: 245 AKDLEETLFNEENL 258
A D L +E +L
Sbjct: 137 ASDF---LLSESSL 147
>gi|253747557|gb|EET02185.1| DNA-directed RNA polymerase subunit A' [Giardia intestinalis ATCC
50581]
Length = 1742
Score = 135 bits (340), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 115/489 (23%), Positives = 210/489 (42%), Gaps = 55/489 (11%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNY 181
E L + + +LS V++ +PI + G+ D +G +S++ C TCG +
Sbjct: 28 EKLVFSVLSSNALMKLSEVQITTPILYEHYPSPARNGVLDKRLG-LSDKVGRCATCGKDT 86
Query: 182 TKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGY 241
C GH G I L +PV + D + +L + C C ++ I + + +
Sbjct: 87 KMCIGHFGTIALALPVFHPGLINDARTMLSIICPFCSRVKISEADRHKYKSLNHKHSLSI 146
Query: 242 VTQAKDLEETLFN-------------EENLR-LHPAQLVQLVDSHVQSILAHGTKICDIN 287
V +A++ + N + R L + + ++ H +I I
Sbjct: 147 VKEAQEQAKKQVNCPFCHAPSTVCKKSQGFRVLREMHYEESATKILAGVIKHQKEIEKIQ 206
Query: 288 DYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKS 347
D + LR+ V + + H+ +K C P I +Q R + S + +
Sbjct: 207 DLD--QRLRNHVVDPIQALHILKKVPECDYPYLGIPWQSRNVYASQQTPTSIASNDASQL 264
Query: 348 LNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRS 407
++ S++++ + ++ + + L ++H L +++I T I
Sbjct: 265 FSRGSSKLLARTANRFIAQHQETGEHVTLLRSQHF--------LTRPQDVILTHI----- 311
Query: 408 LVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGI 467
VPP+ LRP S++ + + L ++ I+ + +K L EA+
Sbjct: 312 -PVPPSCLRP-SVQSGSGAGTTEDSLTSHLVR--------ILTVNDK-----LKEAVTS- 355
Query: 468 RGDTLNNKLQNSWHELQYNVDLLMDAKL-------NINKTTGAHQIDGLKQMLDGKTGMI 520
G +K+ W +L +V LL K+ +G + G+ L GK G
Sbjct: 356 -GAVTTSKVYAKWDQLNMDVSLLYIGKIPGGVQPVKGKIDSGTKEGTGIIDRLKGKAGRF 414
Query: 521 RQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGP 580
R N+ GKRVNF+GR+VI+P+PYL++ + +P A+ LT+P VT N+ LR++++NG
Sbjct: 415 RSNLSGKRVNFSGRTVISPNPYLSMQQVAIPRLIAQNLTFPEIVTSRNIRFLRELILNG- 473
Query: 581 NVYPGANMI 589
YPGAN +
Sbjct: 474 KTYPGANEV 482
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 72
F R+VI+P+PYL++ + +P A+ LT+P VT N+ LR++++NG YPGAN +
Sbjct: 425 FSGRTVISPNPYLSMQQVAIPRLIAQNLTFPEIVTSRNIRFLRELILNG-KTYPGANEV 482
>gi|348523738|ref|XP_003449380.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Oreochromis niloticus]
Length = 1966
Score = 135 bits (340), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 133/476 (27%), Positives = 212/476 (44%), Gaps = 85/476 (17%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E+K++SV + + P T G GGL D G I ER C TC N T+C GH GH
Sbjct: 28 ELKRMSVTEGGIKYPETTEG-GRPKLGGLMDPRQGVI-ERTGRCQTCAGNMTECPGHFGH 85
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
IEL PV + F + +L+ CF C K+ L+ N K+ KD+
Sbjct: 86 IELAKPVFHVGFISKIMKVLRCVCFFCSKL-------LVDSNNPKI---------KDILA 129
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKR 310
+ RL +HV L G IC+ GGEE+ + F + + +
Sbjct: 130 KSKGQPRKRL----------THVYE-LCKGKNICE-----GGEEMDNKFGME--QQETEE 171
Query: 311 KCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGYVMASE- 368
YQ R I + L+ + K +N+ S +E+ +++ E
Sbjct: 172 DLTKEKGHGGCGRYQPR-------IKRSGLELYAEWKHVNEDS------QEKKILLSPER 218
Query: 369 VEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEH 428
V FK++ E + +L + + M + L VPP +RP + Q
Sbjct: 219 VHEIFKRISDEEDI-------ILGMDPKFARPEWMIVTVLPVPPLAVRPAVVMQ----GS 267
Query: 429 SRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVD 488
+RN+ + + + + ++ EQS + + + KL LQ++V
Sbjct: 268 ARNQ--DDLTHKLADIVKINNQLRRNEQSGAAAHVI------AEDVKL------LQFHVA 313
Query: 489 LLMDAKL-----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYL 543
++D +L + K+ + +KQ L GK G +R N+MGKRV+F+ R+VITPDP L
Sbjct: 314 TMVDNELPGLPRAMQKS--GRPLKSIKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNL 371
Query: 544 NIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
ID +GVP A +T+P VTP+N+ L+++V G + YPGA I ++G + +
Sbjct: 372 QIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL 427
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 44/69 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A +T+P VTP+N+ L+++V G + YPGA I
Sbjct: 359 FSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYII 418
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 419 RDNGDRIDL 427
>gi|308161109|gb|EFO63568.1| DNA-directed RNA polymerase subunit A' [Giardia lamblia P15]
Length = 1741
Score = 135 bits (339), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 116/489 (23%), Positives = 209/489 (42%), Gaps = 55/489 (11%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNY 181
E L + + +LS V++ +PI + G+ D +G +S++ C TCG +
Sbjct: 28 EKLVFSVLSSNALMKLSEVQITTPILYEHYPSPAANGVLDKRLG-LSDKVGRCATCGKDT 86
Query: 182 TKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGY 241
C GH G I L +PV + D + +L + C C ++ I +L +
Sbjct: 87 KMCIGHFGTISLALPVFHPGLINDARTMLSVVCPFCSRVKISEADRLKYKVLNHKFSLSI 146
Query: 242 VTQAKDLEETLFN-------------EENLR-LHPAQLVQLVDSHVQSILAHGTKICDIN 287
V +A++ + N + R L + + + ++ H I I
Sbjct: 147 VKEAQEQAKKQVNCPFCHAPSTICKKSQGFRVLREMHYEESANKILADVIKHQKDIEKIQ 206
Query: 288 DYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKS 347
+ + LR+ V + + H+ +K C P I +Q R + S Q+ D
Sbjct: 207 ELD--QRLRNHVVDPIQALHILQKVPECDYPYLGIPWQSRNVYAS--------QQTPDSI 256
Query: 348 LNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRS 407
+ +NQ+ + +S++ A + +H + L + L + +
Sbjct: 257 ASNDANQLFSRG------SSKLLARTASRFIAQHQGISERTTRLTSQAFLTKPQDVILTH 310
Query: 408 LVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGI 467
+ VPP+ LRP S++ + + L ++ I+ + +K L EA+
Sbjct: 311 IPVPPSCLRP-SVQSGSGAGTTEDNLTSHLVR--------ILTINDK-----LKEAMAS- 355
Query: 468 RGDTLNNKLQNSWHELQYNVDLLMDAKL-------NINKTTGAHQIDGLKQMLDGKTGMI 520
G +K+ W +L ++ LL K+ +G + G+ L GK G
Sbjct: 356 -GAVATSKVYAKWDQLNMDISLLYIGKIPGGVQPVKSKTDSGTKEGTGIIDRLKGKAGRF 414
Query: 521 RQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGP 580
R N+ GKRVNF+GR+VI+P+PYL++ + +P A+ LT+P VT N+ LR++++NG
Sbjct: 415 RSNLSGKRVNFSGRTVISPNPYLSMQQVAIPRLIAQNLTFPEIVTSRNIRFLRELILNG- 473
Query: 581 NVYPGANMI 589
YPGAN +
Sbjct: 474 KTYPGANEV 482
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 72
F R+VI+P+PYL++ + +P A+ LT+P VT N+ LR++++NG YPGAN +
Sbjct: 425 FSGRTVISPNPYLSMQQVAIPRLIAQNLTFPEIVTSRNIRFLRELILNG-KTYPGANEV 482
>gi|301628367|ref|XP_002943327.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like,
partial [Xenopus (Silurana) tropicalis]
Length = 1946
Score = 135 bits (339), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 131/450 (29%), Positives = 202/450 (44%), Gaps = 82/450 (18%)
Query: 157 GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFL 216
GGL D G I ER C TC N T+C GH GHIEL PV + F +L+ CF
Sbjct: 31 GGLMDPRQGVI-ERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFF 89
Query: 217 CHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSI 276
C K+ L+DA + KD+ + RL +HV
Sbjct: 90 CSKL---------------LVDANN-PKIKDILIKSKGQPKKRL----------THVYE- 122
Query: 277 LAHGTKICDINDYKGGEELRSAF-VAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKI 335
L G IC+ GGEE+ + F V Q +K YQ R I
Sbjct: 123 LCKGKNICE-----GGEEMDNKFGVEQTEGDEDIQKEKGHG---GCGRYQPR-------I 167
Query: 336 DKDNLDQSLD-KSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTT 394
+ L+ + K +N+ S +E+ +++ E + K T+E F+ + P
Sbjct: 168 RRTGLELYAEWKHVNEDS------QEKKILLSPERVHEIFKRITDEECFILGMDPRFARP 221
Query: 395 KELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNK 454
+ LI T L VPP ++RP + Q +RN+ + + + + ++
Sbjct: 222 EWLIVT------VLPVPPLSVRPAVVMQ----GSARNQ--DDLTHKLADIVKINNQLRRN 269
Query: 455 EQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKL-----NINKTTGAHQIDGL 509
EQ+ + + + KL LQ++V ++D +L + K+ + L
Sbjct: 270 EQNGAAAHVI------AEDVKL------LQFHVATMVDNELPGLPRAMQKS--GRPLKSL 315
Query: 510 KQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNV 569
KQ L GK G +R N+MGKRV+F+ R+VITPDP L+ID +GVP A +T+P VTP+N+
Sbjct: 316 KQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFPEIVTPFNI 375
Query: 570 TLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
L+++V G + YPGA I ++G + +
Sbjct: 376 DRLQELVRRGNSQYPGAKYIIRDNGDRIDL 405
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +GVP A +T+P VTP+N+ L+++V G + YPGA I
Sbjct: 337 FSARTVITPDPNLSIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYII 396
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 397 RDNGDRIDL 405
>gi|390363773|ref|XP_003730447.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Strongylocentrotus purpuratus]
Length = 1880
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 131/448 (29%), Positives = 195/448 (43%), Gaps = 80/448 (17%)
Query: 157 GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFL 216
GGL D G I +R C TC N T C GH GH+EL V + F +L+ CF
Sbjct: 53 GGLMDPRQGAI-DRTSRCQTCACNQTDCPGHFGHMELAKAVFHIGFLTKTIKVLRCVCFF 111
Query: 217 CHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSI 276
C K+ L+DA + ++E L + P + + V + +
Sbjct: 112 CSKL---------------LVDANH----PKIKEILIKTKG---QPRKRLLHVYTECRK- 148
Query: 277 LAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKID 336
K+C+ GGEE+ F A + R + + YQ +I
Sbjct: 149 ----KKMCE-----GGEEMDQTFDANLAQREGEEMPEKKVSHGGCGRYQP-------QIR 192
Query: 337 KDNLDQSLD-KSLNKSSNQIIRKREQGYVMASE-VEADFKKLWTNEHLFLKCLIPVLDTT 394
+ LD S + K +N+ S +E+ V+ +E V FK++ E + L
Sbjct: 193 RSGLDLSAEWKHVNEDS------QEKKIVLTAERVHEIFKRISDEESI-------ALGMD 239
Query: 395 KELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNK 454
+ D M I L VPP +RP + +RN+ + + + + +K
Sbjct: 240 PKFTRPDWMIITVLPVPPLCVRPAVVM----FGSTRNQ--DDLTHKLADIMKINNQLKRN 293
Query: 455 EQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKL-----NINKTTGAHQIDGL 509
EQ+ A I DT LQ++V ++D +L + K+ + L
Sbjct: 294 EQN---GAAAHIIAEDT---------RMLQFHVATIIDNELPGLPRAMQKS--GRPLKSL 339
Query: 510 KQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNV 569
KQ L K G IR N+MGKRV+F+ R+VITPDP L ID +GVP A LTYP VTP+N+
Sbjct: 340 KQRLKAKEGRIRGNLMGKRVDFSARAVITPDPNLMIDQVGVPRTIATNLTYPEIVTPFNI 399
Query: 570 TLLRKMVINGPNVYPGANMIQNEDGSVV 597
L+++V G N YPGA I ++G V
Sbjct: 400 AKLQELVSRGHNQYPGAKYIIRDNGERV 427
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 43/67 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A LTYP VTP+N+ L+++V G N YPGA I
Sbjct: 361 FSARAVITPDPNLMIDQVGVPRTIATNLTYPEIVTPFNIAKLQELVSRGHNQYPGAKYII 420
Query: 74 NEDGSVV 80
++G V
Sbjct: 421 RDNGERV 427
>gi|392568044|gb|EIW61218.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Trametes versicolor FP-101664 SS1]
Length = 1739
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/280 (33%), Positives = 142/280 (50%), Gaps = 18/280 (6%)
Query: 354 QIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLI-------PVLDTTKELIATDIMFIR 406
+ R R + V E A ++L+ NE + L PV L + D+ F+
Sbjct: 325 KTARGRNERVVPPEECRAHLRRLFRNESVMCSLLFGRHGPLAPVNQNNLSLASADMFFME 384
Query: 407 SLVVPPNNLRPLSMEQMPPVEHSRNKLYQSIL---YSCGSLKSVIMAMKNKEQSDLLSEA 463
L V P RP + EH +N+L +L Y L + + A K SD+ A
Sbjct: 385 VLPVSPTRFRPPAKMGEMLFEHPQNELMSKVLTTSYRLRDLNNNLRAASTK-GSDVEEAA 443
Query: 464 LKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINK-TTGAHQIDGLKQMLDGKTGMIRQ 522
+ I L+ +Q LQ +V+ +D+ N G G+KQ L+ K G+ R+
Sbjct: 444 RRRILQSLLDTLIQ-----LQVDVNSYIDSSKNPTPIRQGRLPPAGVKQGLEKKEGLFRK 498
Query: 523 NMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNV 582
+MMGKRVN+A RSVI+PD + + IG+P FA+ LT+P PVTP N LR++VI G
Sbjct: 499 HMMGKRVNYAARSVISPDVNIEPNEIGIPPVFARKLTFPEPVTPNNFHELRQLVITGARG 558
Query: 583 YPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP-EGNY 621
YPGA M++ EDG + + QR ++A +L+TP EG++
Sbjct: 559 YPGATMVEYEDGHLHFLDKLTLEQRTAIANQLLTPQEGSH 598
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 81/133 (60%), Gaps = 6/133 (4%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
+ + T ++V+++SV ++ +P+ + L GGLYD ++GP S++ D C TC +Y
Sbjct: 14 VSFSFLTTEDVRRISVKQIVNPVLLDDLNRPNVGGLYDPSLGP-SDKQDICATCRLSYFT 72
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLL--FINQIKLLDAGY 241
C GH GHIELP PV + LF + L++ +C CH+ + S+ L ++ +++LL+ G+
Sbjct: 73 CPGHFGHIELPAPVFHPLFMANAYHLIRGTCLFCHRFKL---SRFLCKYVAKLRLLEYGF 129
Query: 242 VTQAKDLEETLFN 254
V AK L++ ++
Sbjct: 130 VVAAKALDDMHYD 142
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 64/107 (59%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PD + + IG+P FA+ LT+P PVTP N LR++VI G YPGA M++
Sbjct: 507 YAARSVISPDVNIEPNEIGIPPVFARKLTFPEPVTPNNFHELRQLVITGARGYPGATMVE 566
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKIITRQEVV 120
EDG + + QR ++A +L+TP++ H + ++ + T V
Sbjct: 567 YEDGHLHFLDKLTLEQRTAIANQLLTPQEGSHGSAQRQGLYTSTPAV 613
>gi|405965007|gb|EKC30438.1| DNA-directed RNA polymerase II subunit RPB1 [Crassostrea gigas]
Length = 3055
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 127/474 (26%), Positives = 203/474 (42%), Gaps = 88/474 (18%)
Query: 133 EVKQLSVVK---VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
E++++SV +S +T G GGL D G I +R C TC N ++C GH G
Sbjct: 26 EIRRMSVTDGGIRYSEVTEG--GRPKLGGLMDPRQGTI-DRSARCQTCAGNISECPGHFG 82
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLE 249
HIEL PV + F +L+ CF C K+ + T+ I +I Y +
Sbjct: 83 HIELAKPVFHIGFLVKTIKILRCVCFFCSKLLVDPTNPK--IKEILSKSKAYPRK----- 135
Query: 250 ETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVK 309
+LV + D L K+C+ GG+E+ +A + + +
Sbjct: 136 --------------RLVAVYD------LCKSRKVCE-----GGDEMDNAKLGEETQEGDQ 170
Query: 310 RKCIF-CATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASE 368
+K C I ++I +K D + S +K + + A
Sbjct: 171 KKGHGGCGRYQPKIKRTGLELIAEWK---DTNEDSQEKKI--------------VLTADR 213
Query: 369 VEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEH 428
V FK++ +E C VL D M + + VPP +RP + M
Sbjct: 214 VHEIFKRISDDE-----CQ--VLGMDHRYSRPDWMIVTVMPVPPLAVRPAVV--MFGSAR 264
Query: 429 SRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVD 488
+++ L + + + +N S ++SE +K LQY+V
Sbjct: 265 NQDDLTHKLADIIKANNQLRRNEQNGAASHIISEDMK----------------MLQYHVA 308
Query: 489 LLMDAKL-----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYL 543
D +L + K+ + +KQ L GK G +R N+MGKRV+F+ R+VITPDP L
Sbjct: 309 TFTDNELPGLPKAVQKS--GRPLKSVKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNL 366
Query: 544 NIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
ID +GVP A+ +T+P VTP+N+ ++++V G N YPGA I ++G +
Sbjct: 367 RIDQVGVPRSIAQNMTFPELVTPFNIDRMQELVRRGANQYPGAKYIIRDNGERI 420
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 44/67 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ +T+P VTP+N+ ++++V G N YPGA I
Sbjct: 354 FSARTVITPDPNLRIDQVGVPRSIAQNMTFPELVTPFNIDRMQELVRRGANQYPGAKYII 413
Query: 74 NEDGSVV 80
++G +
Sbjct: 414 RDNGERI 420
>gi|115910670|ref|XP_788781.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform
3 [Strongylocentrotus purpuratus]
Length = 1921
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 131/450 (29%), Positives = 196/450 (43%), Gaps = 80/450 (17%)
Query: 157 GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFL 216
GGL D G I +R C TC N T C GH GH+EL V + F +L+ CF
Sbjct: 53 GGLMDPRQGAI-DRTSRCQTCACNQTDCPGHFGHMELAKAVFHIGFLTKTIKVLRCVCFF 111
Query: 217 CHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSI 276
C K+ L+DA + ++E L + P + + V + +
Sbjct: 112 CSKL---------------LVDANH----PKIKEILIKTKG---QPRKRLLHVYTECRK- 148
Query: 277 LAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKID 336
K+C+ GGEE+ F A + R + + YQ +I
Sbjct: 149 ----KKMCE-----GGEEMDQTFDANLAQREGEEMPEKKVSHGGCGRYQP-------QIR 192
Query: 337 KDNLDQSLD-KSLNKSSNQIIRKREQGYVMASE-VEADFKKLWTNEHLFLKCLIPVLDTT 394
+ LD S + K +N+ S +E+ V+ +E V FK++ E + L
Sbjct: 193 RSGLDLSAEWKHVNEDS------QEKKIVLTAERVHEIFKRISDEESI-------ALGMD 239
Query: 395 KELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNK 454
+ D M I L VPP +RP + +RN+ + + + + +K
Sbjct: 240 PKFTRPDWMIITVLPVPPLCVRPAVVM----FGSTRNQ--DDLTHKLADIMKINNQLKRN 293
Query: 455 EQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKL-----NINKTTGAHQIDGL 509
EQ+ A I DT LQ++V ++D +L + K+ + L
Sbjct: 294 EQN---GAAAHIIAEDT---------RMLQFHVATIIDNELPGLPRAMQKS--GRPLKSL 339
Query: 510 KQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNV 569
KQ L K G IR N+MGKRV+F+ R+VITPDP L ID +GVP A LTYP VTP+N+
Sbjct: 340 KQRLKAKEGRIRGNLMGKRVDFSARAVITPDPNLMIDQVGVPRTIATNLTYPEIVTPFNI 399
Query: 570 TLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
L+++V G N YPGA I ++G V +
Sbjct: 400 AKLQELVSRGHNQYPGAKYIIRDNGERVDL 429
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 44/69 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A LTYP VTP+N+ L+++V G N YPGA I
Sbjct: 361 FSARAVITPDPNLMIDQVGVPRTIATNLTYPEIVTPFNIAKLQELVSRGHNQYPGAKYII 420
Query: 74 NEDGSVVRI 82
++G V +
Sbjct: 421 RDNGERVDL 429
>gi|410906965|ref|XP_003966962.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like,
partial [Takifugu rubripes]
Length = 1628
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 133/474 (28%), Positives = 211/474 (44%), Gaps = 85/474 (17%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E+K++SV + + P T G GGL D G I ER C TC N T+C GH GH
Sbjct: 28 ELKRMSVTEGGIRYPETTEG-GRPKLGGLMDPRQGVI-ERTGRCQTCAGNMTECPGHFGH 85
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
IEL PV + F + +L+ CF C K+ L+DA + KD+
Sbjct: 86 IELAKPVFHVGFVTKIMKVLRCVCFFCSKL---------------LVDANN-PKIKDILV 129
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKR 310
+ RL +HV L G IC+ GGEE+ + F + + +
Sbjct: 130 KSKGQPRKRL----------THVYE-LCKGKNICE-----GGEEMDNKFGME--QQETEE 171
Query: 311 KCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGYVMASE- 368
YQ R I + L+ + K +N+ S +E+ +++ E
Sbjct: 172 DITKEKGHGGCGRYQPR-------IRRSGLELYAEWKHVNEDS------QEKKILLSPER 218
Query: 369 VEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEH 428
V FK++ E + +L + + M + L VPP +RP + Q
Sbjct: 219 VHEIFKRISDEEDI-------ILGMDSKFARPEWMIVTVLPVPPLAVRPAVVMQ----GS 267
Query: 429 SRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVD 488
+RN+ + + + + ++ EQS + + + KL LQ++V
Sbjct: 268 ARNQ--DDLTHKLADIVKINNQLRRNEQSGAAAHVI------AEDVKL------LQFHVA 313
Query: 489 LLMDAKL-----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYL 543
++D +L + K+ + +KQ L GK G +R N+MGKRV+F+ R+VITPDP L
Sbjct: 314 TMVDNELPGLPRAMQKS--GRPLKSIKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNL 371
Query: 544 NIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
ID +GVP A +T+P VTP+N+ L+++V G + YPGA I ++G +
Sbjct: 372 QIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRI 425
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 43/67 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A +T+P VTP+N+ L+++V G + YPGA I
Sbjct: 359 FSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYII 418
Query: 74 NEDGSVV 80
++G +
Sbjct: 419 RDNGDRI 425
>gi|340711859|ref|XP_003394485.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
[Bombus terrestris]
Length = 1385
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 123/452 (27%), Positives = 200/452 (44%), Gaps = 91/452 (20%)
Query: 153 HT-IPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLK 211
HT +P G+ D MG + + C +CG + +C GH G+I+L +PV + +FR + +L+
Sbjct: 48 HTPVPYGVLDRKMGTCNNITN-CVSCGKSLNECIGHFGYIDLELPVFHVGYFRSIIGILQ 106
Query: 212 LSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDS 271
C C ++ + + ++ ++ + GY+T+ K L + + ++
Sbjct: 107 SICKNCSRVMLSEADKKHYLARVLNPNLGYLTR-KALRKQILDK---------------- 149
Query: 272 HVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIK 331
A T +C G ++ + V ++ +K I+AI Q+K+ +
Sbjct: 150 ------AKKTTVCQYCRDLNGTVKKAGLLKIVHEKYKGKK------KIDAIV--QQKLAE 195
Query: 332 SFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVL 391
+ +DN ++L+ L ++ E ++ E+D L N +C +P
Sbjct: 196 YNNVLEDN--KALEGVLQSGLVNVLNPLEVQSILEKIPESDIPLLLMNS----ECALP-- 247
Query: 392 DTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAM 451
K+LI T I VPP +RP SV+ +
Sbjct: 248 ---KDLILTRI------PVPPICIRP----------------------------SVVSDL 270
Query: 452 KNKEQSDLLSEALKGIR--GDTLNNKLQNSWHELQYNVD---LLMDAKLNINKTTGAHQI 506
K D L+ L I D + Q+ YN D L + L IN +
Sbjct: 271 KAGTTEDHLTMKLSEIVFINDVIQKHRQSGAKVQMYNEDWEFLQLHCALYINSEMSGIPL 330
Query: 507 D--------GLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTL 558
+ GL Q L GK G R N+ GKRV+F+ R+VI+PDP L I+ +GVP+ AK L
Sbjct: 331 NMQPKKSGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLRIEQVGVPIHVAKIL 390
Query: 559 TYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 590
TYP V P N+ L+RK+V NGP+++PGAN IQ
Sbjct: 391 TYPERVNPSNIELMRKLVRNGPDIHPGANFIQ 422
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 45/60 (75%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L I+ +GVP+ AK LTYP V P N+ L+RK+V NGP+++PGAN IQ
Sbjct: 363 FSSRTVISPDPNLRIEQVGVPIHVAKILTYPERVNPSNIELMRKLVRNGPDIHPGANFIQ 422
>gi|432920271|ref|XP_004079921.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Oryzias latipes]
Length = 1599
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 128/447 (28%), Positives = 201/447 (44%), Gaps = 82/447 (18%)
Query: 158 GLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLC 217
GL D G I ER C TC N T+C GH GHIEL PV + F + +L+ CF C
Sbjct: 54 GLMDPRQGVI-ERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFISKIMKVLRCVCFFC 112
Query: 218 HKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSIL 277
K+ L+ N K+ D +T++K + RL +HV L
Sbjct: 113 SKL-------LVDSNNPKIKD--ILTKSK-------GQPRKRL----------THVYE-L 145
Query: 278 AHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDK 337
G IC+ GGEE+ + F V + + YQ R I +
Sbjct: 146 CKGKNICE-----GGEEMDNKF--GVEQQDTEEDITKEKGHGGCGRYQPR-------IRR 191
Query: 338 DNLDQSLD-KSLNKSSNQIIRKREQGYVMASE-VEADFKKLWTNEHLFLKCLIPVLDTTK 395
L+ + K +N+ S +E+ +++ E V FK++ E L +L
Sbjct: 192 SGLELFAEWKHVNEDS------QEKKILLSPERVHEIFKRISDEEDL-------ILGMDP 238
Query: 396 ELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKE 455
+ + M + L VPP +RP + Q +RN+ + + + + ++ E
Sbjct: 239 KFARPEWMIVTVLPVPPLAVRPAVVMQ----GSARNQ--DDLTHKLADIVKINNQLRRNE 292
Query: 456 QSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKL-----NINKTTGAHQIDGLK 510
QS + + + KL LQ++V ++D +L + K+ + +K
Sbjct: 293 QSGAAAHVI------AEDVKL------LQFHVATMVDNELPGLPRAMQKS--GRPLKSIK 338
Query: 511 QMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVT 570
Q L GK G +R N+MGKRV+F+ R+VITPDP L ID +GVP A +T+P VTP+N+
Sbjct: 339 QRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNID 398
Query: 571 LLRKMVINGPNVYPGANMIQNEDGSVV 597
L+++V G + YPGA I ++G +
Sbjct: 399 RLQELVRRGNSQYPGAKYIIRDNGDRI 425
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 43/67 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A +T+P VTP+N+ L+++V G + YPGA I
Sbjct: 359 FSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYII 418
Query: 74 NEDGSVV 80
++G +
Sbjct: 419 RDNGDRI 425
>gi|395324163|gb|EJF56609.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Dichomitus squalens LYAD-421 SS1]
Length = 1724
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/291 (32%), Positives = 151/291 (51%), Gaps = 17/291 (5%)
Query: 342 QSLDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLI-------PVLDTT 394
QSL KS + + R R + V E A ++L+ NE + L P+
Sbjct: 311 QSLPKSAS-GKVKTTRGRNERVVPPEECRAHLRRLFRNESVMCSLLFGRHGPFAPLSQHN 369
Query: 395 KELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSV--IMAMK 452
L + D+ F+ L V P RP + EH +N+L +L + L+ + + +
Sbjct: 370 LSLASADMFFLEVLPVSPTRFRPPAKMGDMLFEHPQNELLSKVLTTSYRLRDLNNSLRLA 429
Query: 453 NKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINK-TTGAHQIDGLKQ 511
+++ SD+ A + I L++ +Q LQ +V+ +D+ N G G+KQ
Sbjct: 430 SEKGSDVDEAARRRILQSLLDSLIQ-----LQVDVNSYIDSSKNPQPIRQGRLPPAGVKQ 484
Query: 512 MLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTL 571
L+ K G+ R++MMGKRVN+A RSVI+PD + + IG+P FA+ LT+P PVTP N
Sbjct: 485 GLEKKEGLFRKHMMGKRVNYAARSVISPDVNIEPNEIGIPPVFARKLTFPEPVTPNNFHE 544
Query: 572 LRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP-EGNY 621
LR++VI G YPGA +++ EDG + QR ++A +L+TP EG++
Sbjct: 545 LRQLVITGARGYPGATIVEYEDGHQQFLDKLTLEQRTAIANQLLTPQEGSH 595
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 76/131 (58%), Gaps = 1/131 (0%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
+ + T ++V+++SV ++ +P+ + L GGLYD A+GP S++ C TC Y
Sbjct: 14 ISFSFLTTEDVRRISVKQIVNPVLLDELNSPNIGGLYDPALGP-SDKNSICATCRLAYYT 72
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVT 243
C GH GHI+LP PV + LF + LL+ +C CH+ + F+ +++LL+ G++
Sbjct: 73 CPGHFGHIDLPAPVFHPLFMVNAYHLLRGTCLFCHRFKVSRFVLCKFVAKLRLLEYGFLV 132
Query: 244 QAKDLEETLFN 254
AK L++ ++
Sbjct: 133 AAKALDDIHYS 143
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 62/107 (57%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PD + + IG+P FA+ LT+P PVTP N LR++VI G YPGA +++
Sbjct: 504 YAARSVISPDVNIEPNEIGIPPVFARKLTFPEPVTPNNFHELRQLVITGARGYPGATIVE 563
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKIITRQEVV 120
EDG + QR ++A +L+TP++ H + + + T V
Sbjct: 564 YEDGHQQFLDKLTLEQRTAIANQLLTPQEGSHGSAQRHGLYTSTPAV 610
>gi|358060144|dbj|GAA94203.1| hypothetical protein E5Q_00851 [Mixia osmundae IAM 14324]
Length = 1436
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 120/438 (27%), Positives = 191/438 (43%), Gaps = 84/438 (19%)
Query: 156 PGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCF 215
PGG+ D +G I+++ C TCG +C GH G+I+L VP+ +T +FR +L++ C
Sbjct: 82 PGGVLDRRLG-IADKKSNCETCGERAKECVGHYGYIKLTVPLFHTGYFRKTIEILQVICK 140
Query: 216 LCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQS 275
+C + + Q + +++ + + + L+E + + P H S
Sbjct: 141 VCSRTLLDDDQQRAALRKLRRPNLDNTQRDRFLKEVVATAKKALNCP---------HCGS 191
Query: 276 ILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKI 335
I +GT ++ A +++ H K Y+ RK+ K
Sbjct: 192 I--NGT-------------VKKAGSLKII--HEK--------------YRARKM----KP 216
Query: 336 DKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTK 395
++ +QS D +L + K +G + S + D L LK + +
Sbjct: 217 AREAFEQSFDHALQDT------KELKGSI--SRAQDDLNPLRA-----LKLFECITNPDC 263
Query: 396 ELIATDIMFIRS-------LVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVI 448
EL+ D R L+VPP +RP + E I+++ +KS +
Sbjct: 264 ELLGLDATISRPETFIWQYLLVPPVTIRPSVQQDDATNEDDLTVKLAEIVFTNQLIKSGL 323
Query: 449 MAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDG 508
KGI+ N W LQ+ V +++ +N N +G + G
Sbjct: 324 A---------------KGIQ----TNVFMEQWDFLQHAVATYINSDVNNNTISGQKPMRG 364
Query: 509 LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWN 568
L Q L GK G R N+ GKRV+F+ R+VI+PDP L ID + VP + AK LTYP VT N
Sbjct: 365 LCQRLKGKQGRFRGNLSGKRVDFSARTVISPDPNLRIDEVAVPEKVAKILTYPERVTSHN 424
Query: 569 VTLLRKMVINGPNVYPGA 586
+ LRK V NG V+PGA
Sbjct: 425 LEQLRKAVRNGKEVHPGA 442
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 37/56 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGA 69
F R+VI+PDP L ID + VP + AK LTYP VT N+ LRK V NG V+PGA
Sbjct: 387 FSARTVISPDPNLRIDEVAVPEKVAKILTYPERVTSHNLEQLRKAVRNGKEVHPGA 442
>gi|324499938|gb|ADY39985.1| DNA-directed RNA polymerase II subunit RPB1 [Ascaris suum]
Length = 1867
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 134/481 (27%), Positives = 210/481 (43%), Gaps = 100/481 (20%)
Query: 133 EVKQLSVVKV-FSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHI 191
E+K++SV ++ FS I N G GGL D G + RG C TC N C GH H+
Sbjct: 27 EIKRMSVGEIEFSEIYEN--GKPKMGGLMDPRQGVVDRRGR-CMTCAGNLADCPGHFAHL 83
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEET 251
EL PV + F +L+ CF C + L I++ DA V + L++T
Sbjct: 84 ELAKPVFHIGFITKTLKILRCVCFYCSR---------LLIDK----DAPRVKEI--LKKT 128
Query: 252 LFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRK 311
+ N P + + L+ L +C+ GG+EL++ + + K
Sbjct: 129 VGN-------PRRRLALIYD-----LCKSKSVCE-----GGDELQNVGGEEGEEGEKEVK 171
Query: 312 CIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVEA 371
C YQ S++ ++ + +N+ + +E+ V+ +E
Sbjct: 172 AGGCG------RYQ-----PSYRRTGIEINAEWKRHVNEDT------QERKIVLTAERAL 214
Query: 372 DFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRN 431
+ K ++ CL+ +D D M + L VPP +RP
Sbjct: 215 EIFKGISDA----DCLVIGMD--PRFARPDWMIAQVLPVPPLAVRP-------------- 254
Query: 432 KLYQSILYSCGSLKSVIMAMKNKEQSDL---LSEALKG---IRGDTLNNKLQNSWHE--- 482
+V+ + Q DL LS+ +K +R + N + E
Sbjct: 255 --------------AVVTFGSARNQDDLTHKLSDIVKTNNQLRRNEANGAAAHVIAEDVK 300
Query: 483 -LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
LQY+V L+D L G + +KQ L GK G IR N+MGKRV+F+ R+VIT
Sbjct: 301 LLQYHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVIT 360
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVR 598
PDP L ID++GVP A+ +T+P VTP+NV L+++V G + YPGA I ++G+ V
Sbjct: 361 PDPNLPIDTVGVPRTIAQNMTFPEIVTPFNVDKLQELVNRGDSQYPGAKYIIRDNGARVD 420
Query: 599 I 599
+
Sbjct: 421 L 421
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID++GVP A+ +T+P VTP+NV L+++V G + YPGA I
Sbjct: 353 FSARTVITPDPNLPIDTVGVPRTIAQNMTFPEIVTPFNVDKLQELVNRGDSQYPGAKYII 412
Query: 74 NEDGSVVRI 82
++G+ V +
Sbjct: 413 RDNGARVDL 421
>gi|401881990|gb|EJT46265.1| DNA-directed RNA polymerase ii largest subunit [Trichosporon asahii
var. asahii CBS 2479]
Length = 1787
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 114/446 (25%), Positives = 183/446 (41%), Gaps = 71/446 (15%)
Query: 157 GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFL 216
GGL D MG I +R C TC +C GH GHIEL PV + F V+ +L+ C+
Sbjct: 44 GGLMDPKMGTI-DRNFKCQTCSEGMAECPGHFGHIELARPVFHAGFIVKVKKILECVCYS 102
Query: 217 CHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSI 276
C K+ + D+ + + R+ P ++ +
Sbjct: 103 CGKLKV------------------------DMRDPMVQNIVRRIKPQHRLKAIWD----- 133
Query: 277 LAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKID 336
LA +C+ + + + + + + K C A + K+I FK
Sbjct: 134 LAKAKNVCEADSLEENDAEQDEY-GENSGPKPKTGHGGCGHHQPAYRKEGLKLIAVFKPS 192
Query: 337 KDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKE 396
KD ++ + E+ + A+E KK+ +E L + L E
Sbjct: 193 KDKQEEGSEP-------------ERRNISAAECHNILKKI-PDEDLLIMGL------NAE 232
Query: 397 LIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQ 456
D M + L VPP +RP S+ V+ + + Y G + ++ E
Sbjct: 233 YARPDWMILTVLPVPPAAVRP-SIS----VDGGAMRSEDDLTYKLGEILKASAQVRKLEA 287
Query: 457 SDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMD---AKLNINKTTGAHQIDGLKQML 513
+G+ +N LQ++V MD A + + ++ L
Sbjct: 288 --------EGVPPSVVNEHFD----LLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARL 335
Query: 514 DGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLR 573
GK G +R N+MGKRV+F+ R+VIT DP L +D +GVP A TLTYP VTP+N+ L+
Sbjct: 336 KGKEGRLRGNLMGKRVDFSARTVITGDPNLQLDQVGVPRSIAMTLTYPERVTPYNINYLQ 395
Query: 574 KMVINGPNVYPGANMIQNEDGSVVRI 599
+++ NGP YPGA + G + +
Sbjct: 396 QLINNGPATYPGARYYVKDTGERIDL 421
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 43/69 (62%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L +D +GVP A TLTYP VTP+N+ L++++ NGP YPGA
Sbjct: 353 FSARTVITGDPNLQLDQVGVPRSIAMTLTYPERVTPYNINYLQQLINNGPATYPGARYYV 412
Query: 74 NEDGSVVRI 82
+ G + +
Sbjct: 413 KDTGERIDL 421
>gi|406700979|gb|EKD04138.1| DNA-directed RNA polymerase ii largest subunit [Trichosporon asahii
var. asahii CBS 8904]
Length = 1771
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 114/446 (25%), Positives = 183/446 (41%), Gaps = 71/446 (15%)
Query: 157 GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFL 216
GGL D MG I +R C TC +C GH GHIEL PV + F V+ +L+ C+
Sbjct: 44 GGLMDPKMGTI-DRNFKCQTCSEGMAECPGHFGHIELARPVFHAGFIVKVKKILECVCYS 102
Query: 217 CHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSI 276
C K+ + D+ + + R+ P ++ +
Sbjct: 103 CGKLKV------------------------DMRDPMVQNIVRRIKPQHRLKAIWD----- 133
Query: 277 LAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKID 336
LA +C+ + + + + + + K C A + K+I FK
Sbjct: 134 LAKAKNVCEADSLEENDAEQDEY-GENSGPKPKTGHGGCGHHQPAYRKEGLKLIAVFKPS 192
Query: 337 KDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKE 396
KD ++ + E+ + A+E KK+ +E L + L E
Sbjct: 193 KDKQEEGSEP-------------ERRNISAAECHNILKKI-PDEDLLIMGL------NAE 232
Query: 397 LIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQ 456
D M + L VPP +RP S+ V+ + + Y G + ++ E
Sbjct: 233 YARPDWMILTVLPVPPAAVRP-SIS----VDGGAMRSEDDLTYKLGEILKASAQVRKLEA 287
Query: 457 SDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMD---AKLNINKTTGAHQIDGLKQML 513
+G+ +N LQ++V MD A + + ++ L
Sbjct: 288 --------EGVPPSVVNEHFD----LLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARL 335
Query: 514 DGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLR 573
GK G +R N+MGKRV+F+ R+VIT DP L +D +GVP A TLTYP VTP+N+ L+
Sbjct: 336 KGKEGRLRGNLMGKRVDFSARTVITGDPNLQLDQVGVPRSIAMTLTYPERVTPYNINYLQ 395
Query: 574 KMVINGPNVYPGANMIQNEDGSVVRI 599
+++ NGP YPGA + G + +
Sbjct: 396 QLINNGPATYPGARYYVKDTGERIDL 421
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 43/69 (62%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L +D +GVP A TLTYP VTP+N+ L++++ NGP YPGA
Sbjct: 353 FSARTVITGDPNLQLDQVGVPRSIAMTLTYPERVTPYNINYLQQLINNGPATYPGARYYV 412
Query: 74 NEDGSVVRI 82
+ G + +
Sbjct: 413 KDTGERIDL 421
>gi|255938285|ref|XP_002559913.1| Pc13g15170 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211584533|emb|CAP92586.1| Pc13g15170 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1448
Score = 132 bits (332), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 141/491 (28%), Positives = 214/491 (43%), Gaps = 92/491 (18%)
Query: 118 EVVPEILK-LKY--YTDQEVKQLSVVKVFSPITFNSLGHT---IPGGLYDLAMGPISERG 171
+ VP+++K LK+ T+ ++ +VV+V S F L T + G D MG IS +
Sbjct: 18 DSVPKVIKELKFGVLTNDDIVGQAVVEV-SDRKFFDLDQTRTVVSNGPLDPRMG-ISNKT 75
Query: 172 DPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFI 231
D C TCGNN C GH GH+ L +P + +F+ V +L+ C C I +P + ++
Sbjct: 76 DSCATCGNNLKDCNGHFGHVRLVLPSFHVGYFKRVISILQEICKECSNILLPEAERRTYL 135
Query: 232 NQIKL--LDAGYVTQ-AKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDIND 288
+++ LD TQ AK + NE + ++ V+ KI
Sbjct: 136 REMRRPGLDNLRRTQIAKRI-----NERCRKTRECTYCGAINGVVKKTGTSALKITH--- 187
Query: 289 YKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSL 348
++ R AF A V VK++ TPI+ KD D S ++
Sbjct: 188 ----DKFR-AFNASV---SVKKQ-----TPIS----------------KDVFDNSFLEA- 217
Query: 349 NKSSNQIIRKREQGYVMASEVEADFKKLWT--NEHLFLKCLIPVLDTTKELI------AT 400
+ +N EVE FKK N LK + D+ ELI A
Sbjct: 218 -RGAN-------------PEVEKHFKKAQDDMNPLRVLKLFKKMSDSDCELIGMNPKEAR 263
Query: 401 DIMFIRSLV-VPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDL 459
MF+ + PP +RP + E I+ S +LK+ +
Sbjct: 264 PEMFLWQFIPAPPVCIRPSVGQDGASTEDDLTAKLGDIVQSNINLKNAL----------- 312
Query: 460 LSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKL-NINKTTGAHQIDGLKQMLDGKTG 518
LKG T + W +Q + + +++ + +NK I G Q L GK G
Sbjct: 313 ----LKGAPVQT----IMECWDYMQLQIAVYINSDVPGLNKADLGKPIRGFVQRLKGKQG 364
Query: 519 MIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVIN 578
R N+ GKRV+F+GR+VI+PDP L +D + VP AK +TYP VT +N L++ + N
Sbjct: 365 RFRGNLSGKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPELVTRYNKEKLQQRICN 424
Query: 579 GPNVYPGANMI 589
G N +PGAN+I
Sbjct: 425 GSNKWPGANLI 435
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 39/59 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 72
F R+VI+PDP L +D + VP AK +TYP VT +N L++ + NG N +PGAN+I
Sbjct: 377 FSGRTVISPDPNLRVDEVAVPELVAKNMTYPELVTRYNKEKLQQRICNGSNKWPGANLI 435
>gi|159477511|ref|XP_001696852.1| DNA-directed RNA polymerase I subunit A [Chlamydomonas reinhardtii]
gi|158274764|gb|EDP00544.1| DNA-directed RNA polymerase I subunit A [Chlamydomonas reinhardtii]
Length = 1515
Score = 132 bits (331), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 87/271 (32%), Positives = 138/271 (50%), Gaps = 19/271 (7%)
Query: 363 YVMASEVEADFKKLWTNEHLFLKCLIP----------------VLDTTKELIATDIMFIR 406
Y+ +EVE + LW++E L + +L+ + A + F+R
Sbjct: 413 YMTPTEVEEHLRLLWSHEWPILSLIYSAQVSAKPGQRGGAGGRLLNEAEARAAYKMFFLR 472
Query: 407 SLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKG 466
L V PN RP S EH+ N + I+ S L S A+ ++ + A
Sbjct: 473 CLPVAPNKFRPPSKVGDELYEHAHNVILAKIINSSLELSSGPRAVDAAARTQGGTGADPA 532
Query: 467 IRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMG 526
++ +W LQ +V LMD+ + Q G++Q L+ K G+ R+NMMG
Sbjct: 533 QAAAMDLSRRVATWLALQNHVCALMDSTTAEDLDKSGAQ--GIRQQLEKKEGLFRKNMMG 590
Query: 527 KRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGA 586
KRVNFA RSVI+PDPY+ IGVP FAK L++P VTP+NV LR VI G + +PGA
Sbjct: 591 KRVNFAARSVISPDPYIGAGEIGVPPYFAKRLSFPERVTPFNVERLRAAVIAGAHQHPGA 650
Query: 587 NMIQN-EDGSVVRISSSQAVQRESLAKRLIT 616
+++ G ++++ + +R+++AK+L++
Sbjct: 651 VAVEDVTTGRMIQLGNLPLERRQAVAKQLMS 681
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 79/154 (51%), Gaps = 15/154 (9%)
Query: 107 AIMKEKIITRQEVVPEILKLKYYTDQE------------VKQLSVVKVFSPITFNSLGHT 154
A K +T ++V ++ +Y++ E V++LSVV + P+ F+
Sbjct: 2 AAAPAKEVTTKQVA--AVRFGFYSEDEHYAKQSHAVRLQVRKLSVVNITCPLIFDDAKVP 59
Query: 155 IPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSC 214
+ GLYD MGP R D C TC ++ +C GH G IELPVPV N L F+ + LL+ +C
Sbjct: 60 VKDGLYDPRMGPTDSR-DKCGTCLLSHDRCPGHFGRIELPVPVYNPLVFKVMYKLLRCTC 118
Query: 215 FLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
CH+ + + ++ ++ L G + +A ++
Sbjct: 119 LHCHRFKLSQDTVDTYLRKLTRLVDGDLVKAVEI 152
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 58/87 (66%), Gaps = 1/87 (1%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDPY+ IGVP FAK L++P VTP+NV LR VI G + +PGA ++
Sbjct: 595 FAARSVISPDPYIGAGEIGVPPYFAKRLSFPERVTPFNVERLRAAVIAGAHQHPGAVAVE 654
Query: 74 N-EDGSVVRISSSQAVQRESLAKRLIT 99
+ G ++++ + +R+++AK+L++
Sbjct: 655 DVTTGRMIQLGNLPLERRQAVAKQLMS 681
>gi|340376989|ref|XP_003387013.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Amphimedon
queenslandica]
Length = 1309
Score = 132 bits (331), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 61/111 (54%), Positives = 84/111 (75%), Gaps = 2/111 (1%)
Query: 508 GLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPW 567
G+KQ L+ K G+ R +MMGKRVN+A RSVI+PDP +N+D IG+P+ FA LTYP PVT W
Sbjct: 15 GIKQTLEKKDGLFRLHMMGKRVNYAARSVISPDPNINMDEIGIPMVFATRLTYPEPVTFW 74
Query: 568 NVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPE 618
N + L K VINGP+V+PGA +QNEDGS++ + + + QR+++AK L+ E
Sbjct: 75 NWSELSKAVINGPHVHPGATHVQNEDGSLILLRNER--QRKAIAKTLLAKE 123
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 65/88 (73%), Gaps = 2/88 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP +N+D IG+P+ FA LTYP PVT WN + L K VINGP+V+PGA +Q
Sbjct: 38 YAARSVISPDPNINMDEIGIPMVFATRLTYPEPVTFWNWSELSKAVINGPHVHPGATHVQ 97
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPE 101
NEDGS++ + + + QR+++AK L+ E
Sbjct: 98 NEDGSLILLRNER--QRKAIAKTLLAKE 123
>gi|357475409|ref|XP_003607990.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
gi|355509045|gb|AES90187.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
Length = 1628
Score = 132 bits (331), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 83/253 (32%), Positives = 129/253 (50%), Gaps = 25/253 (9%)
Query: 368 EVEADFKKLWTNEHLFLKCLIPVLDTT-KELIATDIMFIRSLVVPPNNLRPLSMEQMPPV 426
+V+ K LW NE + + D + + F+ ++ VPP RP
Sbjct: 274 QVQEMIKLLWKNESRLCSHISDIQDQGFGKKAGHSMFFLENIFVPPIKFRPPLKAGDNVA 333
Query: 427 EHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYN 486
EH + L +L S ++ +A ++ +SD + W +LQ +
Sbjct: 334 EHPQTVLLSKVLES-----NISLADAHRTKSDAYY--------------ILRRWQDLQGS 374
Query: 487 VDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNID 546
V+LL D K ++ A G+ Q+LD K G+ RQ MMGKRVN+A RSVI+PDPYL ++
Sbjct: 375 VNLLFDNKTSLRSQKDA---SGICQLLDKKEGIFRQKMMGKRVNYACRSVISPDPYLAVN 431
Query: 547 SIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQ 606
IG+P FA LTYP VTPWN L ++NGP+ +PGA ++ + S +R+ +++
Sbjct: 432 EIGIPPYFALRLTYPERVTPWNSAKLMDAILNGPDTHPGA-ILYTDKTSTLRLQKDKSL- 489
Query: 607 RESLAKRLITPEG 619
R S ++RL + G
Sbjct: 490 RSSTSRRLQSSRG 502
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 55/84 (65%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDPYL ++ IG+P FA LTYP VTPWN L ++NGP+ +PGA ++
Sbjct: 416 YACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNSAKLMDAILNGPDTHPGA-ILY 474
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ S +R+ +++ R S ++RL
Sbjct: 475 TDKTSTLRLQKDKSL-RSSTSRRL 497
>gi|451993939|gb|EMD86411.1| hypothetical protein COCHEDRAFT_1186563 [Cochliobolus
heterostrophus C5]
Length = 1473
Score = 131 bits (330), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 134/498 (26%), Positives = 216/498 (43%), Gaps = 71/498 (14%)
Query: 106 RAIMKEKIITRQEVVPEILKLKYYTDQEVKQLSVVKV-------FSPITFNSLGHTIPGG 158
R K++++ R + ++ Y++Q++ +V++V P N+ T G
Sbjct: 5 RTTAKQQVVDRIPARIKHIQFGIYSNQDIVNQAVLEVSDRNVYDLQPAADNTRTLTANGP 64
Query: 159 LYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCH 218
+ D MG IS + C TCG C GH GHI+L +P + + + + +L C C
Sbjct: 65 M-DTRMG-ISSKQGTCATCGEGLDTCNGHFGHIKLALPAFHVGYLKHIIEVLNCICKDCS 122
Query: 219 KINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILA 278
++ + + ++ ++ D + + + L E+ + + V+ +
Sbjct: 123 RVLLDEVERRRYLRSMRRPDMDTLRKGAVTKRIL--EDCRKKKTCPYCNGLQGTVRKVPG 180
Query: 279 HGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKD 338
H KI + + + A S +K P I + Q SF+ K
Sbjct: 181 HPLKI-----------IHNRYDAFNRSTAKTKK-----APPGKIEFDQ-----SFETSK- 218
Query: 339 NLDQSLDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELI 398
+ + LDK L K+ + + R V FKK+ + E L +IP D E++
Sbjct: 219 SANPDLDKHLKKAVDDMHPLR---------VLNLFKKI-SPEDCELLAMIPE-DARPEML 267
Query: 399 ATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSD 458
+ M VPP LRP M++ E I + + S+I A
Sbjct: 268 IWEYM-----PVPPVALRPSVMQEGGATEDDVTNKIGDICH----ISSIIRA-------- 310
Query: 459 LLSEALKGI-RGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQ-IDGLKQMLDGK 516
G+ RG L L W LQ + + +++ K G + + G Q L GK
Sbjct: 311 -------GLARGFPLQ-ILMEQWDFLQLQIAMYINSDAPGLKQQGLQKTMRGFSQRLKGK 362
Query: 517 TGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMV 576
G RQN+ GKRV+F+GR+VI PDP L+ID + VP AK LTYP VT +N+ LR++V
Sbjct: 363 GGRFRQNLSGKRVDFSGRTVIGPDPNLSIDEVAVPERIAKNLTYPEKVTRYNIDKLRRLV 422
Query: 577 INGPNVYPGANMIQNEDG 594
NG N YPGAN I ++ G
Sbjct: 423 RNGSNKYPGANYILDDQG 440
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 43/64 (67%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI PDP L+ID + VP AK LTYP VT +N+ LR++V NG N YPGAN I
Sbjct: 377 FSGRTVIGPDPNLSIDEVAVPERIAKNLTYPEKVTRYNIDKLRRLVRNGSNKYPGANYIL 436
Query: 74 NEDG 77
++ G
Sbjct: 437 DDQG 440
>gi|397566986|gb|EJK45326.1| hypothetical protein THAOC_36058 [Thalassiosira oceanica]
Length = 1952
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 123/232 (53%), Gaps = 17/232 (7%)
Query: 402 IMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVI------------- 448
I F+R L VPP+ RP + VEHS+N +L L+S
Sbjct: 527 IFFLRCLPVPPSRFRPPMVMGHMTVEHSQNFYLSKVLELNARLRSSFATSTELLREEGEL 586
Query: 449 -MAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQID 507
+++ N S LK ++ ++ +S Q N MD+ + + + +
Sbjct: 587 KISLNNSADGTATSRQLKKVKESREKSQATSSLTARQVNC--FMDSSRDPSGASD-NAPA 643
Query: 508 GLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPW 567
G++Q+L+ K G+ R++MMGKRVNFA RSVI+PDPY+ + IG+PL FAKTLT+P PVT
Sbjct: 644 GIRQLLEKKEGIFRKHMMGKRVNFACRSVISPDPYIGTNEIGLPLHFAKTLTFPTPVTHL 703
Query: 568 NVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPEG 619
N+ ++ +V GP YPGA ++ +G V ++ + R ++A RL++ G
Sbjct: 704 NIAEMQNLVRRGPLEYPGACWVEFPNGQRVDLTYMKERSRHAIAARLLSDAG 755
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 78/131 (59%), Gaps = 2/131 (1%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGD--PCTTCGNNY 181
++ YTD EV+Q SV ++ S +T+++LG+ + GLYD +GP GD C TCGN
Sbjct: 99 VQFGIYTDDEVRQRSVCEISSSVTYDALGNALARGLYDPLLGPTGSGGDNGACPTCGNVP 158
Query: 182 TKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGY 241
C GH GHIEL P+++ LFF + + LK+ C CH+ + +F ++ L+D G
Sbjct: 159 ALCPGHFGHIELCTPLMHPLFFPKLLMFLKMKCQACHEFRLGKRQTRVFAAKLHLIDVGR 218
Query: 242 VTQAKDLEETL 252
+ +A +L++ L
Sbjct: 219 MKEALELDDVL 229
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 56/86 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDPY+ + IG+PL FAKTLT+P PVT N+ ++ +V GP YPGA ++
Sbjct: 667 FACRSVISPDPYIGTNEIGLPLHFAKTLTFPTPVTHLNIAEMQNLVRRGPLEYPGACWVE 726
Query: 74 NEDGSVVRISSSQAVQRESLAKRLIT 99
+G V ++ + R ++A RL++
Sbjct: 727 FPNGQRVDLTYMKERSRHAIAARLLS 752
>gi|425778039|gb|EKV16185.1| DNA-directed RNA polymerase [Penicillium digitatum PHI26]
gi|425781413|gb|EKV19382.1| DNA-directed RNA polymerase [Penicillium digitatum Pd1]
Length = 2075
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 138/489 (28%), Positives = 210/489 (42%), Gaps = 92/489 (18%)
Query: 120 VPEILK-LKY--YTDQEVKQLSVVKVFSPITFNSLGHT---IPGGLYDLAMGPISERGDP 173
VP+++K LK+ T+ ++ +VV+V S F L T + G D MG IS + D
Sbjct: 647 VPKVIKELKFGVLTNDDIVGQAVVEV-SDRKFFDLDQTRTVVANGPLDQRMG-ISNKTDA 704
Query: 174 CTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQ 233
C TCGNN C GH GH+ L +P + +F+ V +L+ C C I +P + ++ +
Sbjct: 705 CATCGNNLKDCNGHFGHVRLILPSFHVGYFKRVISILQEICKECSNILLPEAERRSYLRE 764
Query: 234 IKL--LDAGYVTQ-AKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYK 290
++ LD TQ AK + NE + ++ V+ KI
Sbjct: 765 MRRPGLDNLRRTQIAKRI-----NERCRKTRECTYCGAINGVVKKTGTSALKIT------ 813
Query: 291 GGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNK 350
F A +S VK++ TPI+ KD D S ++ +
Sbjct: 814 -----HDKFRAFNVSVSVKKQ-----TPIS----------------KDVFDNSFLEA--R 845
Query: 351 SSNQIIRKREQGYVMASEVEADFKKLW--TNEHLFLKCLIPVLDTTKELI------ATDI 402
+N +VE FKK N LK + D+ ELI A
Sbjct: 846 GAN-------------PDVEKHFKKAQDDMNPLRVLKLFKKMSDSDCELIGMNPKEARPE 892
Query: 403 MFIRSLV-VPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLS 461
MF+ + PP +RP + E I+ S +LK+ +
Sbjct: 893 MFLWQFIPAPPVCIRPSVGQDGASTEDDLTAKLGDIVQSNINLKNAL------------- 939
Query: 462 EALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKL-NINKTTGAHQIDGLKQMLDGKTGMI 520
LKG T + W +Q + + +++ + +NK I G Q L GK G
Sbjct: 940 --LKGAPVQT----IMECWDYMQLQIAVYINSDVPGLNKADLGKPIRGFVQRLKGKQGRF 993
Query: 521 RQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGP 580
R N+ GKRV+F+GR+VI+PDP L +D + VP AK +TYP VT +N L++ + NG
Sbjct: 994 RGNLSGKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPELVTRYNKEKLQQRICNGS 1053
Query: 581 NVYPGANMI 589
N +PGAN+I
Sbjct: 1054 NKWPGANLI 1062
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 39/59 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 72
F R+VI+PDP L +D + VP AK +TYP VT +N L++ + NG N +PGAN+I
Sbjct: 1004 FSGRTVISPDPNLRVDEVAVPELVAKNMTYPELVTRYNKEKLQQRICNGSNKWPGANLI 1062
>gi|390601472|gb|EIN10866.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Punctularia strigosozonata HHB-11173 SS5]
Length = 1723
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 93/299 (31%), Positives = 151/299 (50%), Gaps = 25/299 (8%)
Query: 335 IDKDNLDQSLDKSLNKSSNQII---RKREQGYVMASEVEADFKKLWTNEHLFLKCLI--- 388
++ +NL Q + K++N I R R + + E A ++L++NE +
Sbjct: 302 VEDENLHQ-IPTGPAKAANGTIKGKRGRNERVMAPEECRAHLRRLFSNEPKMCSLIFGRH 360
Query: 389 -PVLDTTKELIAT---DIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSL 444
P + AT DI F+ ++ V P RP + EH++N+L +L + L
Sbjct: 361 GPFSKFRPDGHATASADIFFMDAIPVSPTRFRPPAKMGDTLFEHAQNQLLTRVLNTSYKL 420
Query: 445 KSVIMAMKNKEQSDLLSEALKGIRGDTLNNK-----LQNSWHELQYNVDLLMDAKLNINK 499
+ + DL + ++K ++ D + L ++ +LQ +V+ +D+ N
Sbjct: 421 RDLT--------RDLRAASVKSVQYDEATRRRILGALLDALVQLQVDVNSFLDSSKNPQP 472
Query: 500 T-TGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTL 558
G G+KQ L+ K G+ RQ+MMGKRVN+A RSVI+PD + + IG+P FA+ L
Sbjct: 473 VRQGQLPPAGVKQGLEKKEGLFRQHMMGKRVNYAARSVISPDVNIEPNEIGIPPVFARKL 532
Query: 559 TYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
T+P VTP NV +R++VING YPGA M++ EDG + R +LA +L+ P
Sbjct: 533 TFPESVTPANVHEMRQLVINGARAYPGATMVEFEDGHQQSLDVMSVEARTALANQLLKP 591
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 84/138 (60%), Gaps = 1/138 (0%)
Query: 120 VPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGN 179
V + + + T ++++++SV ++ +PI + L GGLYD A+GP SE+ D CTTC
Sbjct: 10 VVQSVSFSFLTAEDIRRISVKQIINPILLDDLNRPNIGGLYDPALGP-SEKQDICTTCRL 68
Query: 180 NYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDA 239
NY C GH GHIELP PV + LF ++ +L+ +C CHK + T+ ++ +++L +
Sbjct: 69 NYFTCPGHYGHIELPSPVFHPLFMTNMYHVLRTTCLFCHKFKVGPTTLCVYAGKLRLAEH 128
Query: 240 GYVTQAKDLEETLFNEEN 257
G + AK L++ + ++N
Sbjct: 129 GLLVAAKSLDDLIPQKKN 146
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PD + + IG+P FA+ LT+P VTP NV +R++VING YPGA M++
Sbjct: 505 YAARSVISPDVNIEPNEIGIPPVFARKLTFPESVTPANVHEMRQLVINGARAYPGATMVE 564
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKIITR 116
EDG + R +LA +L+ P + + R K + TR
Sbjct: 565 FEDGHQQSLDVMSVEARTALANQLLKPPEGE-RNSSKHGLYTR 606
>gi|195059969|ref|XP_001995730.1| GH17604 [Drosophila grimshawi]
gi|193896516|gb|EDV95382.1| GH17604 [Drosophila grimshawi]
Length = 1889
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 130/460 (28%), Positives = 198/460 (43%), Gaps = 106/460 (23%)
Query: 157 GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFL 216
GGL D G I +R C TC N T+C GH GHI+L PV + F +L+ CF
Sbjct: 51 GGLMDPRQGVI-DRTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFY 109
Query: 217 CHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSI 276
C K+ L+ N K+ + ++ + + +L + D
Sbjct: 110 CSKM-------LVSPNNPKIKEIVMKSKGQPRK--------------RLAYVYD------ 142
Query: 277 LAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKID 336
L G IC+ GGE++ A Q + + K C YQ I
Sbjct: 143 LCKGKTICE-----GGEDMDLAKDNQQVDPNKKPGHGGCG------HYQP-------SIR 184
Query: 337 KDNLDQSLD-KSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTK 395
+ LD + + K +N+ S +E+ ++++E + K T+E F+ + P
Sbjct: 185 RTGLDLTAEWKHVNEDS------QEKKIIVSAERVWEILKHITDEECFILGMDP------ 232
Query: 396 ELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKE 455
+ D M + L VPP +RP +V+M K
Sbjct: 233 KYARPDWMIVTVLPVPPLAVRP----------------------------AVVMFGAAKN 264
Query: 456 QSDLLSEALKGIRGDTLNNKLQN------SWHELQYNVDLLMD--AKLNINKTTG---AH 504
Q DL + I+ NN+L+ + H +Q N+ +L A L N G A
Sbjct: 265 QDDLTHKLADIIKA---NNELRKNEGSGAAAHVIQENIKMLQFHVATLVDNDMPGMPRAM 321
Query: 505 QIDG-----LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLT 559
Q G +K L GK G IR N+MGKRV+F+ R+VITPDP L ID +GVP A+ LT
Sbjct: 322 QKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLT 381
Query: 560 YPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
+P VTP+N+ ++++V G + YPGA I ++G + +
Sbjct: 382 FPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDL 421
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ LT+P VTP+N+ ++++V G + YPGA I
Sbjct: 353 FSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIV 412
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 413 RDNGERIDL 421
>gi|451856837|gb|EMD70128.1| hypothetical protein COCSADRAFT_177734 [Cochliobolus sativus
ND90Pr]
Length = 1473
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 134/498 (26%), Positives = 216/498 (43%), Gaps = 71/498 (14%)
Query: 106 RAIMKEKIITRQEVVPEILKLKYYTDQEVKQLSVVKV-------FSPITFNSLGHTIPGG 158
R K++++ R + ++ Y++Q++ +V++V P N+ T G
Sbjct: 5 RTTAKQQVVDRIPARIKHIQFGIYSNQDIVNQAVLEVSDRNVYDLQPAADNTRTLTANGP 64
Query: 159 LYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCH 218
+ D MG IS + C TCG C GH GHI+L +P + + + + +L C C
Sbjct: 65 M-DTRMG-ISSKQGTCATCGEGLDTCNGHFGHIKLALPAFHVGYLKHIIEVLNCICKDCS 122
Query: 219 KINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILA 278
++ + + ++ ++ D + + + L E+ + + V+ +
Sbjct: 123 RVLLDEVERRRYLRSMRRPDMDTLRKGAVTKRIL--EDCRKKKTCPYCNGLQGTVRKVPG 180
Query: 279 HGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKD 338
H KI + + + A S +K P I + Q SF+ K
Sbjct: 181 HPLKI-----------IHNRYDAFNRSTAKTKK-----APPGKIEFDQ-----SFETAK- 218
Query: 339 NLDQSLDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELI 398
+ + LDK L K+ + + R V FKK+ + E L +IP D E++
Sbjct: 219 SANPDLDKHLKKAVDDMHPLR---------VLNLFKKI-SPEDCELLAMIPE-DARPEML 267
Query: 399 ATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSD 458
+ M VPP LRP M++ E I + + S+I A
Sbjct: 268 IWEYM-----PVPPVALRPSVMQEGGATEDDVTNKIGDICH----ISSIIRA-------- 310
Query: 459 LLSEALKGI-RGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQ-IDGLKQMLDGK 516
G+ RG L L W LQ + + +++ K G + + G Q L GK
Sbjct: 311 -------GLARGFPLQ-ILMEQWDFLQLQIAMYINSDAPGLKQQGLQKTMRGFSQRLKGK 362
Query: 517 TGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMV 576
G RQN+ GKRV+F+GR+VI PDP L+ID + VP AK LTYP VT +N+ LR++V
Sbjct: 363 GGRFRQNLSGKRVDFSGRTVIGPDPNLSIDEVAVPERIAKNLTYPEKVTRYNIDKLRRLV 422
Query: 577 INGPNVYPGANMIQNEDG 594
NG N YPGAN I ++ G
Sbjct: 423 RNGSNKYPGANYILDDQG 440
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 43/64 (67%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI PDP L+ID + VP AK LTYP VT +N+ LR++V NG N YPGAN I
Sbjct: 377 FSGRTVIGPDPNLSIDEVAVPERIAKNLTYPEKVTRYNIDKLRRLVRNGSNKYPGANYIL 436
Query: 74 NEDG 77
++ G
Sbjct: 437 DDQG 440
>gi|340503712|gb|EGR30247.1| hypothetical protein IMG5_137010 [Ichthyophthirius multifiliis]
Length = 1464
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 128/476 (26%), Positives = 207/476 (43%), Gaps = 81/476 (17%)
Query: 130 TDQEVKQLSVVKVFSPITFNSLGHT-IPGGLYDLAMG-PISERGDPCTTCGNNYTKCKGH 187
T QE+ +S + + P +N + G DL MG + E C TC + C GH
Sbjct: 9 TSQEIIDMSEICLTEPQFYNPATKVPLSRGPLDLRMGLSMRENNQKCQTCQMDMIDCPGH 68
Query: 188 IGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKD 247
G+I+L +P+ + FF ++ +L+ C C +I LL+ K
Sbjct: 69 FGYIKLVLPIFHVGFFTEIINILQCICKNCGEI---------------LLNIDEKLACKK 113
Query: 248 LEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKI-CDINDYKGGEELRSAFVAQVLS- 305
+ NE+N QL L+ + ++ G C I DYK G + + +S
Sbjct: 114 RMQRAINEKNY-----QLRMLIYTKMRKECKKGANSRCRICDYKNGNLKKMPKMPTTISF 168
Query: 306 -RHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYV 364
H K + F R+I KS + ++NL + LD+ K Q+ + +
Sbjct: 169 QNHTKMESDF------------REIKKSENLQQENLRKILDQKQLKDMIQLYNPLQTFNL 216
Query: 365 MASEVEADFKKLWTNEHLFLKCLIPVLDTTK--ELIATDIMFIRSLVVPPNNLRPLSMEQ 422
FKK+ ++ + +D +LI T I +VPP+ +RP E
Sbjct: 217 --------FKKIAQSDVILFN-----IDQNHPIDLILTHI------IVPPSCIRPTIKEG 257
Query: 423 MPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHE 482
V H ++K +NK + ++++ +K+ W
Sbjct: 258 ESNVRHDD-----------LTVKIRDFLERNKRIAQMINDGEDP-------SKINQEWFL 299
Query: 483 LQYNVDLLMDAK-----LNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVI 537
LQ + ++A+ ++K G I L Q L GK G R N+ GKR NF GR+VI
Sbjct: 300 LQCSHAHYLNAETPNLPFKMDKDFGKKDIRALAQRLKGKKGRFRGNLSGKRSNFTGRTVI 359
Query: 538 TPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
+PDP + ID++ +P AK LT+P V +N+ L+K+VINGP+ YPGA+ I ++D
Sbjct: 360 SPDPNIPIDNVVIPEYMAKILTFPETVASYNIDKLKKLVINGPDKYPGAHYIISKD 415
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 45/63 (71%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP + ID++ +P AK LT+P V +N+ L+K+VINGP+ YPGA+ I
Sbjct: 353 FTGRTVISPDPNIPIDNVVIPEYMAKILTFPETVASYNIDKLKKLVINGPDKYPGAHYII 412
Query: 74 NED 76
++D
Sbjct: 413 SKD 415
>gi|403418854|emb|CCM05554.1| predicted protein [Fibroporia radiculosa]
Length = 1738
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/298 (30%), Positives = 151/298 (50%), Gaps = 20/298 (6%)
Query: 336 DKDNLDQSLDKS--LNKSSN---QIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLI-- 388
D D+ + D + L KS++ + R R + + E A ++L+ NE + L
Sbjct: 292 DADDAEAKKDNAPQLPKSASGKVKTARGRNERVMPPEECRAHLRRLFANESVMCSLLYGR 351
Query: 389 -----PVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGS 443
P+ + DI F+ L V P RP + EH +N+L ++ +
Sbjct: 352 HGPFSPLSKHNLSFASVDIFFLDVLPVSPTRFRPPAKMGEMLFEHPQNELLARVITTSYR 411
Query: 444 LKSVIMAMKNK--EQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINK-T 500
L+ + ++ ++S + + + I L+ +Q LQ +V+ +D+ N
Sbjct: 412 LRDLNETLRTASLKESTVDEASRRRILQSLLDGLIQ-----LQVDVNSFIDSSKNPAPIR 466
Query: 501 TGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTY 560
G G+KQ L+ K G+ R+NMMGKRVN+A RSVI+PD + + IG+P FA+ LT+
Sbjct: 467 QGRLPPAGVKQGLEKKEGLFRKNMMGKRVNYAARSVISPDVNIEPNEIGIPPVFARKLTF 526
Query: 561 PVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPE 618
P PVTP N LR+ VI G + YPGA+M++ EDG + + QR ++A +L+TP+
Sbjct: 527 PEPVTPANFHELRQYVITGQSGYPGASMVEYEDGHLQFLDKLSVEQRTAIANQLLTPQ 584
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 66/107 (61%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PD + + IG+P FA+ LT+P PVTP N LR+ VI G + YPGA+M++
Sbjct: 497 YAARSVISPDVNIEPNEIGIPPVFARKLTFPEPVTPANFHELRQYVITGQSGYPGASMVE 556
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKIITRQEVV 120
EDG + + QR ++A +L+TP+D H +I + + TR V
Sbjct: 557 YEDGHLQFLDKLSVEQRTAIANQLLTPQDGSHGSINRSGLYTRTPAV 603
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 70/136 (51%), Gaps = 20/136 (14%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHI 191
++V+++SV ++ +PI + L GGLYD A+GP SE+ D C TC Y C GH GHI
Sbjct: 22 EDVRRISVKQIVNPILLDDLNRPNIGGLYDPALGP-SEKQDICATCRLTYFTCPGHFGHI 80
Query: 192 ELPVPVIN--------TLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVT 243
ELP PV + T F +L++ +C ++ +I+LL+ G++
Sbjct: 81 ELPAPVQSGQKSSEYITNVFESAPFMLRVLLQMCR-----------YVAKIRLLEHGFLI 129
Query: 244 QAKDLEETLFNEENLR 259
AK L++ N R
Sbjct: 130 AAKALDDVHVNTTKSR 145
>gi|345565425|gb|EGX48374.1| hypothetical protein AOL_s00080g3 [Arthrobotrys oligospora ATCC
24927]
Length = 1760
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 127/481 (26%), Positives = 208/481 (43%), Gaps = 72/481 (14%)
Query: 132 QEVKQLSVVKVFSPITFN-SLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
+E+K +SV + P T + S GL D MG I +R C TC N ++C GH GH
Sbjct: 28 EEIKGMSVCHIEFPETMDESKLRPRERGLNDPHMGSI-DRSFKCATCDENMSECPGHFGH 86
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
IEL PV + F ++ +L+ CF C KI LLD + L
Sbjct: 87 IELAKPVFHIGFITKIKKVLETVCFNCGKI---------------LLDENTLANICILR- 130
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSI--LAHGTKICDINDYKGGEEL-RSAFVAQVLSRH 307
+ ++ N + A ++ + ++ + +C+ + +G EE A + +R
Sbjct: 131 CVISKSNPQFVDAMRIRDPKARFNAVWRICRAKNVCESDANEGEEEGPNDALPGEEKAR- 189
Query: 308 VKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMAS 367
K K C I K+I ++K KD +++ + + Q++
Sbjct: 190 -KHKHGGCGNAQPTIRKDGLKLIGTWKPSKDEDEENPQPTKRNLTPQMVLNI-------- 240
Query: 368 EVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRP-LSMEQMPPV 426
FK + +E I + K+ + M I L VPP +RP +S++ M
Sbjct: 241 -----FKHITDDE-------ITKMGLNKDYARPEWMVITVLAVPPPPVRPSISVDGM--- 285
Query: 427 EHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYN 486
+ + + G + ++ EQ + + N+ ++ LQ++
Sbjct: 286 GGGGMRGEDDLTFKLGDIIKANNNLQRCEQEGSPAHVV---------NEFESL---LQFH 333
Query: 487 VDLLMDAKLNINKTTGAHQ--------IDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
V MD N G Q I ++ L GK G +R N+MGKRV+F+ R+VIT
Sbjct: 334 VATFMD-----NDIAGQPQAVQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVIT 388
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVR 598
DP L++D +GVP A+ LTYP VTP+N+ L +V NGPN +PGA + + G +
Sbjct: 389 GDPNLSLDEVGVPRSTARILTYPETVTPYNIKKLSALVKNGPNEHPGAKYVIRDTGERID 448
Query: 599 I 599
+
Sbjct: 449 L 449
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 44/69 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+ LTYP VTP+N+ L +V NGPN +PGA +
Sbjct: 381 FSARTVITGDPNLSLDEVGVPRSTARILTYPETVTPYNIKKLSALVKNGPNEHPGAKYVI 440
Query: 74 NEDGSVVRI 82
+ G + +
Sbjct: 441 RDTGERIDL 449
>gi|357148941|ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Brachypodium distachyon]
Length = 1392
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 123/484 (25%), Positives = 213/484 (44%), Gaps = 106/484 (21%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
++ ++ +E++Q + +V++ + + +P GL D MG ++ G+ C TC +Y +
Sbjct: 27 MRFSMFSGKEIRQSAETQVWNNRIYGNDMKPVPNGLLDPRMGAANKFGE-CATCHGSYHE 85
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVT 243
C GH G+++L +PV N FF ++ +LK C C +I +
Sbjct: 86 CPGHFGYLKLVLPVFNVGFFNNILDVLKSICKGCSRI---------------------LL 124
Query: 244 QAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQV 303
KD E L N RL P ++A + +V
Sbjct: 125 HEKDQREFLKKMRNPRLEPLH-------------------------------KAALMKKV 153
Query: 304 LSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGY 363
+ +C C IN ++ + R + + + ++LD S + + + K+E+
Sbjct: 154 RDKCKLSRCPSCGY-INGVAKKGRPGL----LIVHDCSKTLDGSTEELRSALSHKKEKLS 208
Query: 364 VMA------SEVEADFKKLWTNEHLFLKC-LIPVLDTTKELIATDIMFIRSLVVPPNNLR 416
+ + + V + FK++ T+E C L+ + D ++LI T+I VPP +R
Sbjct: 209 ISSVHTLDPATVLSLFKRM-TDE----DCELLNLGDRPEKLIITEI------AVPPVPIR 257
Query: 417 PLSMEQMPPVEHSRNKLYQSILYSCGSLK---SVIMAMKNKEQSDLLSEALKGI--RGDT 471
P S+ G + + ++N ++ + LKGI GD
Sbjct: 258 P------------------SVFVGGGRMSNEDGITCILRNIVNTNSI---LKGILQNGDP 296
Query: 472 LNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNF 531
L K + W LQ V +++ + Q GL Q L GKTG R N+ GKR +
Sbjct: 297 LM-KCFDCWQLLQLQVVEYINSDA---PSLTDPQNRGLVQRLKGKTGRFRGNLSGKRTEY 352
Query: 532 AGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQN 591
GR+VI+PDP L I + +P+ A+ LTYP V+ +N+ LR+ + NGP+ +PGAN +
Sbjct: 353 TGRTVISPDPNLRITEVAIPVLMARVLTYPERVSYYNIEKLRQCIRNGPHKHPGANFVTQ 412
Query: 592 EDGS 595
DG+
Sbjct: 413 PDGT 416
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 43/65 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ R+VI+PDP L I + +P+ A+ LTYP V+ +N+ LR+ + NGP+ +PGAN +
Sbjct: 352 YTGRTVISPDPNLRITEVAIPVLMARVLTYPERVSYYNIEKLRQCIRNGPHKHPGANFVT 411
Query: 74 NEDGS 78
DG+
Sbjct: 412 QPDGT 416
>gi|169597423|ref|XP_001792135.1| hypothetical protein SNOG_01497 [Phaeosphaeria nodorum SN15]
gi|160707519|gb|EAT91146.2| hypothetical protein SNOG_01497 [Phaeosphaeria nodorum SN15]
Length = 1473
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 135/498 (27%), Positives = 219/498 (43%), Gaps = 71/498 (14%)
Query: 106 RAIMKEKIITRQEVVPEILKLKYYTDQEVKQLSVVKV-------FSPITFNSLGHTIPGG 158
R K++++ R + ++ Y++Q++ +V++V +P N+ T G
Sbjct: 5 RTSAKQQVVDRIPARIKHIQFGIYSNQDIVNQAVIEVSDRNVYDLTPAADNTRALTANGP 64
Query: 159 LYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCH 218
+ D MG IS + C TCG KC GH GHI+L +P + + + + +L C C
Sbjct: 65 M-DPLMG-ISSKTGECGTCGEKLDKCNGHFGHIKLALPAFHVGYLKHIIEVLNCICKDCS 122
Query: 219 KINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILA 278
++ + + ++ ++ D + + ++ L E+ + + V+ +
Sbjct: 123 RVLLDEVERRRYLRSMRRPDMDTLRRTAISKKVL--EDCRKKKTCPYCDALQGTVRKVPG 180
Query: 279 HGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKD 338
H KI + + + A S +K P I + Q SF+ K
Sbjct: 181 HPLKI-----------IHNRYDAFNRSTAKTKK-----PPAGKIEFDQ-----SFETAK- 218
Query: 339 NLDQSLDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELI 398
+ LDK L K+ + + R FKK+ + E L +IP D E++
Sbjct: 219 AANPDLDKHLKKAVDDMHPLRTLNL---------FKKI-SPEDCELLAMIPE-DARPEML 267
Query: 399 ATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSD 458
+ M VPP LRP M++ E + + I C + S+I A
Sbjct: 268 IWEYM-----PVPPVALRPSVMQEGGATE---DDVTNKIGDIC-QISSIIRA-------- 310
Query: 459 LLSEALKGI-RGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQ-IDGLKQMLDGK 516
G+ RG L L W LQ + + +++ K G + + G Q L GK
Sbjct: 311 -------GLARGFPLQ-ILMEQWDFLQLQIAMYINSDAPGLKQQGLQKTMRGFSQRLKGK 362
Query: 517 TGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMV 576
G RQN+ GKRV+F+GR+VI PDP L+ID + VP AK LTYP VT +N+ L+K+V
Sbjct: 363 GGRFRQNLSGKRVDFSGRTVIGPDPNLSIDEVAVPQRVAKILTYPEKVTRYNIKKLQKLV 422
Query: 577 INGPNVYPGANMIQNEDG 594
+NG N YPGAN I + G
Sbjct: 423 LNGANKYPGANYILKDLG 440
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 43/64 (67%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI PDP L+ID + VP AK LTYP VT +N+ L+K+V+NG N YPGAN I
Sbjct: 377 FSGRTVIGPDPNLSIDEVAVPQRVAKILTYPEKVTRYNIKKLQKLVLNGANKYPGANYIL 436
Query: 74 NEDG 77
+ G
Sbjct: 437 KDLG 440
>gi|291220940|ref|XP_002730482.1| PREDICTED: DNA-directed RNA polymerase II A-like [Saccoglossus
kowalevskii]
Length = 1932
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 133/488 (27%), Positives = 213/488 (43%), Gaps = 82/488 (16%)
Query: 122 EILKLKY--YTDQEVKQLSVVK---VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTT 176
E++++++ + E+K++SV + +S T G GL D G + +R C T
Sbjct: 15 EVVRVQFSILSPDEIKRMSVTEGGIRYSETTEG--GRPKLQGLMDPRQG-VVDRLSRCQT 71
Query: 177 CGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKL 236
C N C GH GHIEL PV + F V +L+ CF C K+ L
Sbjct: 72 CAGNMHDCPGHFGHIELSKPVFHVGFIAKVVKVLRCFCFYCSKL---------------L 116
Query: 237 LDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELR 296
+D + ++E L + L P + + HV L G K+C+ GGEE+
Sbjct: 117 VDNNH----PKIKEILIKSKGL---PRKRL----GHVYE-LCKGKKVCE-----GGEEMD 159
Query: 297 SAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQI 355
F A + R + Q I ++ L+ + + K++N+ S
Sbjct: 160 HKFDADLAQREDEADQPAKPKGHGGCGRYQPSIRRA------GLELTAEWKNVNEDS--- 210
Query: 356 IRKREQGYVMASE-VEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNN 414
+E+ ++ +E V FK++ E L ++ + D M + L VPP
Sbjct: 211 ---QEKKIILTAERVLEIFKRISDEESL-------IIGMDPQYTRPDWMIVTVLPVPPLA 260
Query: 415 LRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNN 474
+RP V + K + + + +K EQ+ A I DT
Sbjct: 261 VRPAV------VMNGSAKNQDDLTHKLADIVKASNQLKRNEQN---GAAAHIIAEDT--- 308
Query: 475 KLQNSWHELQYNVDLLMDAK---LNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNF 531
LQ++V ++D + L + +KQ L GK G IR N+MGKRV+F
Sbjct: 309 ------KMLQFHVCTMVDNEQPGLPRAMQKSGRPLKSIKQRLKGKEGRIRGNLMGKRVDF 362
Query: 532 AGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQN 591
+ R+VITPDP L+ID +GVP A+ LT+P VTP+N+ + ++V G N YPGA I
Sbjct: 363 SARAVITPDPNLSIDQVGVPRTIAQNLTFPELVTPFNIDRMHELVKRGNNQYPGAKYIIR 422
Query: 592 EDGSVVRI 599
++G + +
Sbjct: 423 DNGDRIDL 430
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 45/69 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +GVP A+ LT+P VTP+N+ + ++V G N YPGA I
Sbjct: 362 FSARAVITPDPNLSIDQVGVPRTIAQNLTFPELVTPFNIDRMHELVKRGNNQYPGAKYII 421
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 422 RDNGDRIDL 430
>gi|409079663|gb|EKM80024.1| hypothetical protein AGABI1DRAFT_57378 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1750
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 144/274 (52%), Gaps = 12/274 (4%)
Query: 354 QIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLI-------PVLDTTKELIATDIMFIR 406
+ R R + V E A ++L+ NE + + P+ L + D+ F+
Sbjct: 341 KTARGRNERVVAPEECRAHLRRLFRNEAVVCSLIFGRHGPFAPLSFGDLSLASADMFFMD 400
Query: 407 SLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKN-KEQSDLLSEALK 465
+ V P RP + EH +N+L +L + ++ V + +++ +E+ D+ + +
Sbjct: 401 VIPVSPTRFRPPAKLGDTLFEHPQNELLARVLTTSYRMRDVNVELRSLQEKKDVPVD--E 458
Query: 466 GIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKT-TGAHQIDGLKQMLDGKTGMIRQNM 524
G R L + L+ +LQ +V+ +D+ N G G+KQ L+ K G+ R++M
Sbjct: 459 GQRKQLLASLLER-LVQLQVDVNSFIDSSKNPQPVRQGKLPPAGVKQGLEKKEGLFRKHM 517
Query: 525 MGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYP 584
MGKRVN+A RSVI+PD + + IG+P FA+ LT+P VTP N +R+ VI GP+ YP
Sbjct: 518 MGKRVNYAARSVISPDVNIEPNEIGIPPVFARKLTFPEAVTPSNFHEMRQRVITGPHGYP 577
Query: 585 GANMIQNEDGSVVRISSSQAVQRESLAKRLITPE 618
GA M++ EDG + QR ++A +L+TP+
Sbjct: 578 GATMVEYEDGHQQSLDKLTVEQRTAIANQLLTPQ 611
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 70/122 (57%), Gaps = 1/122 (0%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
+ + + Q+++++SV ++ +P+ + L GGLYD A+GP S+R D C TC Y
Sbjct: 14 VSFSFLSTQDIRRISVKQIVNPVLLDDLNRPNIGGLYDPALGP-SDRSDICATCHLTYFT 72
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVT 243
C GH GHI+LP PV + LF ++ LL+ C CH+ + T ++ + +LL+ G +
Sbjct: 73 CPGHYGHIDLPAPVFHPLFMGNMYNLLRGCCMFCHRFKMSRTVLCQYVAKFRLLERGLLE 132
Query: 244 QA 245
A
Sbjct: 133 AA 134
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 62/107 (57%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PD + + IG+P FA+ LT+P VTP N +R+ VI GP+ YPGA M++
Sbjct: 524 YAARSVISPDVNIEPNEIGIPPVFARKLTFPEAVTPSNFHEMRQRVITGPHGYPGATMVE 583
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKIITRQEVV 120
EDG + QR ++A +L+TP++ ++ + TR +
Sbjct: 584 YEDGHQQSLDKLTVEQRTAIANQLLTPQEGDRTVAGRKGLHTRTPAI 630
>gi|350402598|ref|XP_003486538.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
[Bombus impatiens]
Length = 1385
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 124/453 (27%), Positives = 198/453 (43%), Gaps = 93/453 (20%)
Query: 153 HT-IPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLK 211
HT +P G+ D MG + + C +CG + +C GH G+I+L +PV + +FR + +L+
Sbjct: 48 HTPVPYGVLDRKMGTCNNTTN-CISCGKSLNECIGHFGYIDLELPVFHVGYFRSIIGILQ 106
Query: 212 LSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDS 271
C C + + + ++ ++ + GY+T+ K L + + ++
Sbjct: 107 TICKNCSHVMLSEADKKHYLARVLNPNLGYLTR-KALRKQILDK---------------- 149
Query: 272 HVQSILAHGTKICD-INDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKII 330
A T +C D G ++ A + +++ K K I+AI Q+K+
Sbjct: 150 ------AKKTTVCQHCRDLNG--TVKKAGLLKIVHEKYKGK-----KKIDAIV--QQKLA 194
Query: 331 KSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPV 390
+ + +DN ++L+ L ++ E ++ E+D L N L
Sbjct: 195 EYNNVLEDN--KALEGVLQTGLISVLNPLEVQSILEKIPESDIPLLLMNSEYAL------ 246
Query: 391 LDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMA 450
K+LI T I VPP +RP SV+
Sbjct: 247 ---PKDLILTRI------PVPPICIRP----------------------------SVVSD 269
Query: 451 MKNKEQSDLLSEALKGIR--GDTLNNKLQNSWHELQYNVD---LLMDAKLNINKTTGAHQ 505
+K D L+ L I D + Q+ YN D L + L IN
Sbjct: 270 LKAGTTEDHLTMKLSEIVFINDVIQKHRQSGAKVQMYNEDWEFLQLHCALYINSEMSGIP 329
Query: 506 ID--------GLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKT 557
++ GL Q L GK G R N+ GKRV+F+ R+VI+PDP L I+ +GVP+ AK
Sbjct: 330 LNMQPKKSGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLRIEQVGVPIHVAKI 389
Query: 558 LTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 590
LTYP V P N+ L+RK+V NGP+++PGAN IQ
Sbjct: 390 LTYPERVNPSNIELMRKLVRNGPDIHPGANFIQ 422
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 45/60 (75%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L I+ +GVP+ AK LTYP V P N+ L+RK+V NGP+++PGAN IQ
Sbjct: 363 FSSRTVISPDPNLRIEQVGVPIHVAKILTYPERVNPSNIELMRKLVRNGPDIHPGANFIQ 422
>gi|402222556|gb|EJU02622.1| subunit of DNA dependent RNA-polymerase [Dacryopinax sp. DJM-731
SS1]
Length = 1749
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/287 (32%), Positives = 143/287 (49%), Gaps = 15/287 (5%)
Query: 342 QSLDKSLNKSSNQII---RKREQGYVMASEVEADFKKLWTNEHLFLKCLI------PVLD 392
+++++ L K++N + R R + + ASEV A + L+ E L ++
Sbjct: 327 EAVEEQLPKAANGTLKTSRGRSERVLSASEVRAHLRLLFQKEVTLTSLLYGRHGPYALVH 386
Query: 393 TTKELIAT--DIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMA 450
+ L+ DI F+ L VPP RP + EH +N+L +L + ++ V +
Sbjct: 387 SHTGLVQANADIFFLSVLPVPPTRFRPPAKMGEQLFEHPQNELLARVLATSYRIRDVNVQ 446
Query: 451 MKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKT-TGAHQIDGL 509
+ + A D L L +LQ +V+ MD+ N G +G+
Sbjct: 447 LAEITRK---GSAAGPEETDKLLAVLFERLVQLQVDVNSFMDSGKNPQPVRQGKKPPEGV 503
Query: 510 KQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNV 569
KQ L+ K G+ R NMMGKRVN+A RSVI+PD + IG+P FA+ LT+ PVT N+
Sbjct: 504 KQRLEKKEGLFRMNMMGKRVNYAARSVISPDVNIETSEIGIPPVFARKLTFAEPVTAQNL 563
Query: 570 TLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLIT 616
T L+++V NGP YPGA M++ EDGS + QR ++A L T
Sbjct: 564 TELQQLVENGPRKYPGATMVEYEDGSRQSLDKLSDSQRAAVAATLQT 610
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 63/117 (53%), Gaps = 1/117 (0%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
L + + +V+++SV ++ +PI + L GGLYD A+GP S + D C TC Y
Sbjct: 14 LSFSFLSTDDVRRISVKQLTNPILLDDLNRPTIGGLYDPALGP-SGKNDICATCRLTYFT 72
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAG 240
C GH GHIELP PV + LF LL+ C CHK + + +++LL+ G
Sbjct: 73 CPGHYGHIELPSPVYHPLFMIPCYTLLRTCCLYCHKFKVSRITVARCAAKLRLLEHG 129
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 52/86 (60%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PD + IG+P FA+ LT+ PVT N+T L+++V NGP YPGA M++
Sbjct: 525 YAARSVISPDVNIETSEIGIPPVFARKLTFAEPVTAQNLTELQQLVENGPRKYPGATMVE 584
Query: 74 NEDGSVVRISSSQAVQRESLAKRLIT 99
EDGS + QR ++A L T
Sbjct: 585 YEDGSRQSLDKLSDSQRAAVAATLQT 610
>gi|383861274|ref|XP_003706111.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
[Megachile rotundata]
Length = 2015
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 139/525 (26%), Positives = 228/525 (43%), Gaps = 98/525 (18%)
Query: 84 SSQAVQRESLAKRLITPEDQQHRAIMKEKIITRQEVVPEILKLKYYTD--QEVKQLSVVK 141
+ + + +S AKR++T R M ++ +V +I + + D +++ + +
Sbjct: 612 TDEYIGWKSRAKRILTS-----RPSMVKEQFRETDVARKISHVSFGVDSRHNMERQAHMH 666
Query: 142 VFSPITFN-SLGHT-IPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVIN 199
V + +N + HT +P G+ D MG + + C +CG + +C GH G+I+L +PV +
Sbjct: 667 VVAKNLYNQDVEHTPVPYGVLDRRMGTCNNTTN-CASCGKSLNECIGHFGYIDLELPVFH 725
Query: 200 TLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLR 259
+FR + +L+ C C + + + ++ ++ + GY+T+ K L + + +
Sbjct: 726 VGYFRSIIGILQSICKNCAHVMLSEADKKHYLTRVLNPNLGYLTR-KALRKQILEK---- 780
Query: 260 LHPAQLVQLVDSHVQSILAHGTKIC-DINDYKGGEELRSAFVAQVLSRHVKRKCIFCATP 318
A T +C + D G ++ A + +++ K K
Sbjct: 781 ------------------AKKTTVCQNCGDLNG--TVKKAGLLKIVHEKYKAK-----KK 815
Query: 319 INAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWT 378
I+AI Q+ + D L+ L L N + K Q ++ E+D L
Sbjct: 816 IDAIVQQKLAEYNNVLEDNKALEGILQNGLVNILNPLEVKVVQS-ILEKIPESDIPLLMM 874
Query: 379 NEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSIL 438
N +C +P K+LI T I VPP +RP
Sbjct: 875 NP----ECALP-----KDLILTRI------PVPPICIRP--------------------- 898
Query: 439 YSCGSLKSVIMAMKNKEQSDLLSEALKGIR--GDTLNNKLQNSWHELQYNVD---LLMDA 493
SV+ +K D L+ L I D + Q+ YN D L +
Sbjct: 899 -------SVVSDLKAGTTEDHLTMKLSEIVFINDVIQKHRQSGAKVQMYNEDWEFLQLHC 951
Query: 494 KLNINKTTGAHQID--------GLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNI 545
L IN ++ GL Q L GK G R N+ GKRV+F+ R+VI+PDP L I
Sbjct: 952 ALYINSEMSGIPLNMQPKKSGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLRI 1011
Query: 546 DSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 590
+ +GVP+ AK LTYP V P N+ L+RK+V NGP+V+PGAN IQ
Sbjct: 1012 EQVGVPIHVAKILTYPERVNPSNIELMRKLVRNGPDVHPGANFIQ 1056
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 45/60 (75%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L I+ +GVP+ AK LTYP V P N+ L+RK+V NGP+V+PGAN IQ
Sbjct: 997 FSSRTVISPDPNLRIEQVGVPIHVAKILTYPERVNPSNIELMRKLVRNGPDVHPGANFIQ 1056
>gi|302141712|emb|CBI18915.3| unnamed protein product [Vitis vinifera]
Length = 1565
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 131/493 (26%), Positives = 205/493 (41%), Gaps = 79/493 (16%)
Query: 133 EVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIE 192
E++Q+SVV++ T G PGGL D +G I +R C TC N +C GH GH+E
Sbjct: 27 EIRQMSVVQIEHSET-TERGKPKPGGLSDPRLGTI-DRKMKCETCTANMAECPGHFGHLE 84
Query: 193 LPVPVINTLFFRDVQLLLKLSCFLCHKI-------NIPATSQLLFINQIKLLDAGYVTQA 245
L P+ + F + V +++ CF C KI N+ S+ F N L +
Sbjct: 85 LAKPMFHIGFMKTVLSIMRCVCFNCSKILADELTENVKWISKSKFANMKSLKLGHSLLHC 144
Query: 246 KDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLS 305
K + + +R +L +++D+ C+ GG+E+ + +
Sbjct: 145 KSEDHKFKQAQKIRNPKNRLKKILDA------CKNKSKCE-----GGDEIETQALDS--D 191
Query: 306 RHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVM 365
VK+ C ++ + K+I +KI + N Q+ E+ +
Sbjct: 192 EPVKKSRGGCGAQQPKLTIEGMKMIAEYKIQRKK---------NDDPEQLPEPVERKQQL 242
Query: 366 ASEVEADFKKLWTNEHLFLKCLIP-----------VLDTTKELIATDIMFIRS------L 408
++E + K ++E L L P VL + +M S L
Sbjct: 243 SAERVLNVLKRISDEDCILLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEASL 302
Query: 409 VVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIR 468
V N+ LSM + H +AM + +L + G
Sbjct: 303 SVLVNDRLKLSMWLWDDLTHQ-------------------LAMIIRHNENLRRQERNGAP 343
Query: 469 GDTLNNKLQNSWHELQYNVDLLMDAKL----NINKTTGAHQIDGLKQMLDGKTGMIRQNM 524
++ Q LQ++V D +L + +G I + L K G IR N+
Sbjct: 344 AHIISEFAQ----LLQFHVATYFDNELPGQPRATQRSG-RPIKSICSRLKAKEGRIRGNL 398
Query: 525 MGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYP 584
MGKRV+F+ R+VITPDP +NID +GVP A LTYP VTP+N+ L+++V GP+ P
Sbjct: 399 MGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPP 458
Query: 585 ---GANMIQNEDG 594
GA I EDG
Sbjct: 459 GKTGAKYIIREDG 471
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 43/67 (64%), Gaps = 3/67 (4%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYP---GAN 70
F R+VITPDP +NID +GVP A LTYP VTP+N+ L+++V GP+ P GA
Sbjct: 405 FSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAK 464
Query: 71 MIQNEDG 77
I EDG
Sbjct: 465 YIIREDG 471
>gi|255076723|ref|XP_002502032.1| predicted protein [Micromonas sp. RCC299]
gi|226517297|gb|ACO63290.1| predicted protein [Micromonas sp. RCC299]
Length = 1479
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 117/484 (24%), Positives = 208/484 (42%), Gaps = 91/484 (18%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGPISERGDPCTTCGNNY 181
++ + QE+ + V VF + + +P G+ D MG ++G C TC
Sbjct: 39 VRFSLMSPQEIGKCGVFHVFERNLYQ-MPQRVPLKNGILDPRMGTTDKKGTECATCKGKL 97
Query: 182 TKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGY 241
C GH G+++L +PV + +F+++ +L+ C C ++ +P + ++ +
Sbjct: 98 IDCAGHFGYVKLELPVFHIGYFKNIIAILQQVCKECSRVMLPEEERQQYLKR-------- 149
Query: 242 VTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVA 301
F L + P + + LA K C I
Sbjct: 150 -----------FRNPRLEIVPKRALS-------KKLADKCKRCRI--------------- 176
Query: 302 QVLSRHVKRKCIFCATPINAISYQQRKIIKSFKI--DKDNLDQSLDKSLNKSSNQIIRKR 359
C C A+ ++ S KI +K + + L ++ K + ++
Sbjct: 177 ----------CPSCGAANGAV----KRTGASLKIVHEKYSKNPELMEAYVKEFEEAVKHN 222
Query: 360 EQGYVMASEVEADFKKLWTNEHLF----LKC-LIPVLDTTKELIATDIMFIRSLVVPPNN 414
+Q + V+ D + L + C L+ V D + LI T L VPP
Sbjct: 223 DQLKANLARVQDDLNPIRVESILSKISPMDCELLDVADRPEHLILT------HLPVPPVC 276
Query: 415 LRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNN 474
+RP S+E + + + ++ +I E +++L + L+ +G +NN
Sbjct: 277 IRP-SVEMEGQAGSNEDDITMKLI-------QII------EVNNVLRQGLE--KGLAINN 320
Query: 475 KLQNSWHELQYNVDLLMDAKL---NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNF 531
++N W LQ + ++++L + + G Q L GK G R N+ GKRV+F
Sbjct: 321 LMEN-WDFLQIQCAMYINSELPGLSAQYQGPGKPLRGFVQRLKGKQGRFRGNLSGKRVDF 379
Query: 532 AGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQN 591
+GR+VI+PDP L ID +GVP+ AK +TYP V+ N+ ++R+ V NG N +PGAN ++
Sbjct: 380 SGRTVISPDPNLRIDEVGVPMHIAKMMTYPEVVSRHNIEMIRERVRNGMNKHPGANFVRF 439
Query: 592 EDGS 595
+ G
Sbjct: 440 KSGG 443
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 44/65 (67%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID +GVP+ AK +TYP V+ N+ ++R+ V NG N +PGAN ++
Sbjct: 379 FSGRTVISPDPNLRIDEVGVPMHIAKMMTYPEVVSRHNIEMIRERVRNGMNKHPGANFVR 438
Query: 74 NEDGS 78
+ G
Sbjct: 439 FKSGG 443
>gi|327287678|ref|XP_003228555.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Anolis
carolinensis]
Length = 1969
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 135/479 (28%), Positives = 214/479 (44%), Gaps = 91/479 (18%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E+K++SV + + P T G GGL D G I ER C TC N T+C GH GH
Sbjct: 29 EMKRMSVTEGGIKYPETTEG-GRPKLGGLMDPRQGVI-ERTGRCQTCAGNMTECPGHFGH 86
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
IEL PV + F +L+ CF C K+ L+ N K+ KD+
Sbjct: 87 IELAKPVFHVGFLGKTMKVLRCVCFFCSKL-------LVDSNNPKI---------KDILA 130
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAF-VAQVLSRH-- 307
+ RL +HV L G IC+ GGEE+ + F V Q
Sbjct: 131 KSKGQPKKRL----------THVYD-LCKGKNICE-----GGEEMDNKFGVEQPEGDEDI 174
Query: 308 -VKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGYVM 365
++ C YQ R I + L+ + K +N+ S +E+ ++
Sbjct: 175 TKEKGHGGCG------RYQPR-------IRRSGLELYAEWKHVNEDS------QEKKILL 215
Query: 366 ASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPP 425
+ E + K ++E F+ + P + +I T L VPP ++RP + Q
Sbjct: 216 SPERVHEIFKRISDEECFILGMDPKFARPEWMICT------VLPVPPLSVRPAVVMQ--- 266
Query: 426 VEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQY 485
+RN+ + + + + ++ EQ+ + + + KL LQ+
Sbjct: 267 -GSARNQ--DDLTHKLADIVKINNQLRRNEQNGAAAHVI------AEDVKL------LQF 311
Query: 486 NVDLLMDAKL-----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPD 540
+V ++D +L + K+ + LKQ L GK G +R N+MGKRV+F+ R+VITPD
Sbjct: 312 HVATMVDNELPGLPRAMQKS--GRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPD 369
Query: 541 PYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
P L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I ++G + +
Sbjct: 370 PNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL 428
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I
Sbjct: 360 FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII 419
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 420 RDNGDRIDL 428
>gi|358371706|dbj|GAA88313.1| DNA-directed RNA polymerase III largest subunit [Aspergillus kawachii
IFO 4308]
Length = 2146
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 133/512 (25%), Positives = 216/512 (42%), Gaps = 89/512 (17%)
Query: 93 LAKRLITPEDQQHRAIMKEKIITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLG 152
LA+R TP + + K ++I R V + LK ++ ++ VV+V S F L
Sbjct: 694 LARR--TPPEGVQVDLGKAQVIDRVPKVIKELKFGVLSNDDIVSQGVVEV-SDRKFFDLD 750
Query: 153 H---TIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLL 209
H + G D MG IS + C TCG C GH GH+ L +P + +F+ V +
Sbjct: 751 HDRAVVANGPLDARMG-ISNKTSSCQTCGGALQVCNGHFGHVRLVLPAFHVGYFKRVITI 809
Query: 210 LKLSCFLCHKINIPATSQLLFINQIKL--LDAGYVTQAKDLEETLFNEENLRLHPAQLVQ 267
L+ C C +I +P + ++ +++ LD NLR Q+ +
Sbjct: 810 LQEVCKECSRILLPEADRRAYLREMRRPGLD------------------NLRR--GQIAK 849
Query: 268 LVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQR 327
++ + T+ C+ G ++ A + + H K + +T + + +
Sbjct: 850 RINERCRK-----TRNCEACGAVNGV-VKKAGTSALKITHDKFRAFNASTSVKKVPPPSK 903
Query: 328 KIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWT--NEHLFLK 385
+ D+S D++ ++SN +EVE +KK N L
Sbjct: 904 IV----------FDRSFDEA--RTSN-------------AEVEKHYKKAQDDMNALRVLN 938
Query: 386 CLIPVLDTTKELI------ATDIMFIRSLV-VPPNNLRPLSMEQMPPVEHSRNKLYQSIL 438
+ DT EL+ A MF+ + PP +RP + E I+
Sbjct: 939 LFKKISDTDCELLGLNPKEARPEMFLWQFIPAPPVCIRPSVGQDAASTEDDLTAKLGDIV 998
Query: 439 YSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKL-NI 497
S +LK+ + LKG T+ W +Q + + +++ + +
Sbjct: 999 QSNINLKNAL---------------LKGAPVQTI----MECWDYMQLQIAVYINSDVPGL 1039
Query: 498 NKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKT 557
NK I G Q L GK G R N+ GKRV+F+GR+VI+PDP L +D + VP AK
Sbjct: 1040 NKADLGKPIRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRVDEVAVPELVAKN 1099
Query: 558 LTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 589
+TYP VT +N L++ V NG +PGAN I
Sbjct: 1100 MTYPEVVTRYNKEKLQQRVRNGTKKWPGANYI 1131
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 37/59 (62%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 72
F R+VI+PDP L +D + VP AK +TYP VT +N L++ V NG +PGAN I
Sbjct: 1073 FSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQRVRNGTKKWPGANYI 1131
>gi|393244933|gb|EJD52444.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Auricularia delicata TFB-10046 SS5]
Length = 1718
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 87/272 (31%), Positives = 136/272 (50%), Gaps = 10/272 (3%)
Query: 357 RKREQGYVMASEVEADFKKLWTNEHLFLKCLI----PVLDTTKELIA---TDIMFIRSLV 409
R R + V E A ++L+ NE L P T+E ++ D F+ L
Sbjct: 319 RGRNERVVSPEEARAHIRRLFKNEAEICALLFGRHGPFAPLTREGLSPGSADQFFLEVLP 378
Query: 410 VPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRG 469
V P RP EH N+L IL + L+ + M+ K +S
Sbjct: 379 VSPTRFRPPVEMGDQLFEHPHNELLTKILVTSYRLRDITNDMRAKVPD--ISAEAAAAAH 436
Query: 470 DTLNNKLQNSWHELQYNVDLLMDAKLNINKTT-GAHQIDGLKQMLDGKTGMIRQNMMGKR 528
L ++ + LQ +V+ +D+ N G G+KQ L+ K G+ R++MMGKR
Sbjct: 437 TKLLGQMLETLIRLQDDVNSFIDSSKNPQPVRRGKLPPPGIKQGLEKKEGLFRKHMMGKR 496
Query: 529 VNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANM 588
VN+A RSVI+PD ++ + IG+P FA+ LT+P PVT N + ++V GP YPGA++
Sbjct: 497 VNYAARSVISPDVNIDTNEIGIPPVFARKLTFPEPVTALNFLEMHRLVKAGPREYPGASI 556
Query: 589 IQNEDGSVVRISSSQAVQRESLAKRLITPEGN 620
++ EDG+ + + QR ++A +L+TP+GN
Sbjct: 557 VEFEDGTQHSLDAMTLEQRTAIANQLMTPQGN 588
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 68/119 (57%), Gaps = 1/119 (0%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHI 191
+E++++SV ++ +P+ + L G LYD A+GP + D C TC +C GH GHI
Sbjct: 22 EEIRRVSVKQIVNPVLLDDLNRPNQGALYDPALGPSGPK-DICATCRLQSFECPGHFGHI 80
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
ELP PV + LF + L++ +C CH+ + + +++LL+ G + A+DL++
Sbjct: 81 ELPAPVFHPLFMNSLYNLIRSTCMFCHRFKLSREVLCKYAAKLRLLEYGLLQAAQDLDD 139
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 57/88 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PD ++ + IG+P FA+ LT+P PVT N + ++V GP YPGA++++
Sbjct: 499 YAARSVISPDVNIDTNEIGIPPVFARKLTFPEPVTALNFLEMHRLVKAGPREYPGASIVE 558
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPE 101
EDG+ + + QR ++A +L+TP+
Sbjct: 559 FEDGTQHSLDAMTLEQRTAIANQLMTPQ 586
>gi|386001093|ref|YP_005919392.1| DNA-directed RNA polymerase subunit A' [Methanosaeta harundinacea
6Ac]
gi|312183603|gb|ADQ42371.1| DNA-directed RNA polymerase subunit A' [Methanosaeta harundinacea
6Ac]
gi|357209149|gb|AET63769.1| DNA-directed RNA polymerase subunit A' [Methanosaeta harundinacea
6Ac]
Length = 878
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 116/488 (23%), Positives = 208/488 (42%), Gaps = 114/488 (23%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHI 191
QE +++SVVK+ + T++ G I GL D +G I + G C +CG +C GH GHI
Sbjct: 20 QEFRRMSVVKIITADTYDDDGFPIEMGLMDPRLGVI-DPGLRCRSCGGRPGECPGHFGHI 78
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEET 251
+L PVI+ F + ++ +L+ C C ++ +L N+ ++ Y+ Q + L
Sbjct: 79 DLIAPVIHVGFAKLIRKILRAICRDCSRL-------MLLENEKRM----YLEQIETL--- 124
Query: 252 LFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRK 311
+L Q D V + + K +
Sbjct: 125 -----------VRLGQTTDDVVNKVFSEARK--------------------------HKV 147
Query: 312 CIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMA-SEVE 370
C +C P I +++ + E+G+ + S++
Sbjct: 148 CPYCGAPQQEIKFER----------------------------PLAYVEEGHKLTPSDIR 179
Query: 371 ADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRP-LSMEQMPPVEHS 429
F+K+ + I V+ + + M + L VPP +RP +++E + S
Sbjct: 180 DRFEKIPDED-------IKVMGMNPDTARPEWMLLTVLPVPPVTMRPSITLESG---QRS 229
Query: 430 RNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDL 489
+ L ++ I+ + + Q + + A + I +++ W LQY++
Sbjct: 230 EDDLTHKLVD--------IIRINQRFQENREAGAPQLI--------IEDLWELLQYHITT 273
Query: 490 LMDAKLNI---NKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNID 546
+D ++ + + L Q L GK G R ++ GKRVNF+ R+VI+PDP L+I+
Sbjct: 274 FLDNTVSGVPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNFSARTVISPDPNLSIN 333
Query: 547 SIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQ 606
+GVPLE A L+ P+ V N+ ++R V G + +PG N + DG V+++ A
Sbjct: 334 EVGVPLEIAMELSVPLVVNGRNIEVMRDFVRRGADKHPGVNYVTRADGRRVKVTDRNA-- 391
Query: 607 RESLAKRL 614
E +A +L
Sbjct: 392 -EEVADQL 398
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 57/101 (56%), Gaps = 4/101 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L+I+ +GVPLE A L+ P+ V N+ ++R V G + +PG N +
Sbjct: 318 FSARTVISPDPNLSINEVGVPLEIAMELSVPLVVNGRNIEVMRDFVRRGADKHPGVNYVT 377
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKII 114
DG V+++ A E +A +L P + R +M I+
Sbjct: 378 RADGRRVKVTDRNA---EEVADQL-EPGWKVDRQLMDGDIV 414
>gi|426198573|gb|EKV48499.1| hypothetical protein AGABI2DRAFT_220361 [Agaricus bisporus var.
bisporus H97]
Length = 1750
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 143/274 (52%), Gaps = 12/274 (4%)
Query: 354 QIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLI-------PVLDTTKELIATDIMFIR 406
+ R R + V E A ++L+ NE + + P+ L + D+ F+
Sbjct: 341 KTARGRNERVVAPEECRAHLRRLFRNEAVVCSLIFGRHGPFAPLSFGDLSLASADMFFMD 400
Query: 407 SLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKN-KEQSDLLSEALK 465
+ V P RP + EH +N+L +L + ++ V + +++ +E+ D + +
Sbjct: 401 VIPVSPTRFRPPAKLGDTLFEHPQNELLARVLTTSYRMRDVNVELRSLQEKKD--APVDE 458
Query: 466 GIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKT-TGAHQIDGLKQMLDGKTGMIRQNM 524
G R L + L+ +LQ +V+ +D+ N G G+KQ L+ K G+ R++M
Sbjct: 459 GQRKQLLASLLER-LVQLQVDVNSFIDSSKNPQPVRQGKLPPAGVKQGLEKKEGLFRKHM 517
Query: 525 MGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYP 584
MGKRVN+A RSVI+PD + + IG+P FA+ LT+P VTP N +R+ VI GP+ YP
Sbjct: 518 MGKRVNYAARSVISPDVNIEPNEIGIPPVFARKLTFPEAVTPSNFHEMRQRVITGPHGYP 577
Query: 585 GANMIQNEDGSVVRISSSQAVQRESLAKRLITPE 618
GA M++ EDG + QR ++A +L+TP+
Sbjct: 578 GATMVEYEDGHQQSLDKLTVEQRTAIANQLLTPQ 611
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 70/122 (57%), Gaps = 1/122 (0%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
+ + + Q+++++SV ++ +P+ + L GGLYD A+GP S+R D C TC Y
Sbjct: 14 VSFSFLSTQDIRRISVKQIVNPVLLDDLNRPNIGGLYDPALGP-SDRSDICATCHLTYFT 72
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVT 243
C GH GHI+LP PV + LF ++ LL+ C CH+ + T ++ + +LL+ G +
Sbjct: 73 CPGHYGHIDLPAPVFHPLFMGNMYNLLRGCCMFCHRFKMSRTVLCQYVAKFRLLERGLLE 132
Query: 244 QA 245
A
Sbjct: 133 AA 134
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 62/107 (57%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PD + + IG+P FA+ LT+P VTP N +R+ VI GP+ YPGA M++
Sbjct: 524 YAARSVISPDVNIEPNEIGIPPVFARKLTFPEAVTPSNFHEMRQRVITGPHGYPGATMVE 583
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKIITRQEVV 120
EDG + QR ++A +L+TP++ ++ + TR +
Sbjct: 584 YEDGHQQSLDKLTVEQRTAIANQLLTPQEGDRTVAGRKGLNTRTPAI 630
>gi|332847192|ref|XP_511300.3| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Pan
troglodytes]
Length = 1907
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 134/481 (27%), Positives = 214/481 (44%), Gaps = 95/481 (19%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E+K++SV + + P T G GGL D G I ER C TC N T+C GH GH
Sbjct: 30 ELKRMSVTEGGIKYPETTEG-GRPKLGGLMDPRQGVI-ERTGRCQTCAGNMTECPGHFGH 87
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
IEL PV + F +L+ CF C K+ L+ N K+ KD+
Sbjct: 88 IELAKPVFHVGFLVKTMKVLRCVCFFCSKL-------LVDSNNPKI---------KDILA 131
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQV------L 304
+ RL +HV L G IC+ GGEE+ + F + L
Sbjct: 132 KSKGQPKKRL----------THVYD-LCKGKNICE-----GGEEMDNKFGVEQPEGDEDL 175
Query: 305 SRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGY 363
++ ++ C YQ R I + L+ + K +N+ S +E+
Sbjct: 176 TK--EKGHGGCG------RYQPR-------IRRSGLELYAEWKHVNEDS------QEKKI 214
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQM 423
+++ E + K ++E F VL + M + L VPP ++RP + Q
Sbjct: 215 LLSPERVHEIFKRISDEECF------VLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQ- 267
Query: 424 PPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHEL 483
+RN+ + + + + ++ EQ+ + + + KL L
Sbjct: 268 ---GSARNQ--DDLTHKLADIVKINNQLRRNEQNGAAAHVI------AEDVKL------L 310
Query: 484 QYNVDLLMDAKL-----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
Q++V ++D +L + K+ + LKQ L GK G +R N+MGKRV+F+ R+VIT
Sbjct: 311 QFHVATMVDNELPGLPRAMQKS--GRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVR 598
PDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I ++G +
Sbjct: 369 PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRID 428
Query: 599 I 599
+
Sbjct: 429 L 429
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I
Sbjct: 361 FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII 420
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 421 RDNGDRIDL 429
>gi|6677795|ref|NP_033115.1| DNA-directed RNA polymerase II subunit RPB1 [Mus musculus]
gi|200794|gb|AAA40071.1| RNA polymerase II [Mus musculus]
Length = 1932
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 134/481 (27%), Positives = 214/481 (44%), Gaps = 95/481 (19%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E+K++SV + + P T G GGL D G I ER C TC N T+C GH GH
Sbjct: 30 ELKRMSVTEGGIKYPETTEG-GRPKLGGLMDPRQGVI-ERTGRCQTCAGNMTECPGHFGH 87
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
IEL PV + F +L+ CF C K+ L+ N K+ KD+
Sbjct: 88 IELAKPVFHVGFLVKTMKVLRCVCFFCSKL-------LVDSNNPKI---------KDILA 131
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQV------L 304
+ RL +HV L G IC+ GGEE+ + F + L
Sbjct: 132 KSKGQPKKRL----------THVYD-LCKGKNICE-----GGEEMDNKFGVEQPEGDEDL 175
Query: 305 SRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGY 363
++ ++ C YQ R I + L+ + K +N+ S +E+
Sbjct: 176 TK--EKGHGGCG------RYQPR-------IRRSGLELYAEWKHVNEDS------QEKKI 214
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQM 423
+++ E + K ++E F VL + M + L VPP ++RP + Q
Sbjct: 215 LLSPERVHEIFKRISDEECF------VLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQ- 267
Query: 424 PPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHEL 483
+RN+ + + + + ++ EQ+ + + + KL L
Sbjct: 268 ---GSARNQ--DDLTHKLADIVKINNQLRRNEQNGAAAHVI------AEDVKL------L 310
Query: 484 QYNVDLLMDAKL-----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
Q++V ++D +L + K+ + LKQ L GK G +R N+MGKRV+F+ R+VIT
Sbjct: 311 QFHVATMVDNELPGLPRAMQKS--GRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVR 598
PDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I ++G +
Sbjct: 369 PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRID 428
Query: 599 I 599
+
Sbjct: 429 L 429
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I
Sbjct: 361 FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII 420
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 421 RDNGDRIDL 429
>gi|293340189|ref|XP_002724554.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Rattus norvegicus]
gi|293351610|ref|XP_002727769.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Rattus norvegicus]
Length = 1932
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 134/481 (27%), Positives = 214/481 (44%), Gaps = 95/481 (19%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E+K++SV + + P T G GGL D G I ER C TC N T+C GH GH
Sbjct: 30 ELKRMSVTEGGIKYPETTEG-GRPKLGGLMDPRQGVI-ERTGRCQTCAGNMTECPGHFGH 87
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
IEL PV + F +L+ CF C K+ L+ N K+ KD+
Sbjct: 88 IELAKPVFHVGFLVKTMKVLRCVCFFCSKL-------LVDSNNPKI---------KDILA 131
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQV------L 304
+ RL +HV L G IC+ GGEE+ + F + L
Sbjct: 132 KSKGQPKKRL----------THVYD-LCKGKNICE-----GGEEMDNKFGVEQPEGDEDL 175
Query: 305 SRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGY 363
++ ++ C YQ R I + L+ + K +N+ S +E+
Sbjct: 176 TK--EKGHGGCG------RYQPR-------IRRSGLELYAEWKHVNEDS------QEKKI 214
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQM 423
+++ E + K ++E F VL + M + L VPP ++RP + Q
Sbjct: 215 LLSPERVHEIFKRISDEECF------VLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQ- 267
Query: 424 PPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHEL 483
+RN+ + + + + ++ EQ+ + + + KL L
Sbjct: 268 ---GSARNQ--DDLTHKLADIVKINNQLRRNEQNGAAAHVI------AEDVKL------L 310
Query: 484 QYNVDLLMDAKL-----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
Q++V ++D +L + K+ + LKQ L GK G +R N+MGKRV+F+ R+VIT
Sbjct: 311 QFHVATMVDNELPGLPRAMQKS--GRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVR 598
PDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I ++G +
Sbjct: 369 PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRID 428
Query: 599 I 599
+
Sbjct: 429 L 429
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I
Sbjct: 361 FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII 420
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 421 RDNGDRIDL 429
>gi|119490427|ref|XP_001263030.1| DNA-directed RNA polymerase III largest subunit, putative
[Neosartorya fischeri NRRL 181]
gi|119411190|gb|EAW21133.1| DNA-directed RNA polymerase III largest subunit, putative
[Neosartorya fischeri NRRL 181]
Length = 1453
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 131/495 (26%), Positives = 211/495 (42%), Gaps = 87/495 (17%)
Query: 110 KEKIITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGH---TIPGGLYDLAMGP 166
K ++I R V + LK ++ ++ +VV+V S F L H +P G D MG
Sbjct: 13 KAQVIDRVPKVIKELKFGVLSNDDIVSQAVVEV-SDRKFFDLEHDRAVVPHGPLDGRMG- 70
Query: 167 ISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATS 226
IS + C TCG + C GH GH+ L +P + +F+ V +L+ C C +I +P
Sbjct: 71 ISSKTATCQTCGGSLQVCNGHFGHVRLVLPAFHVGYFKRVISILQEICKECSRILLPEAE 130
Query: 227 QLLFINQIKL--LDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKIC 284
+ F+ +++ LD NLR Q+ + ++ + T+ C
Sbjct: 131 RRAFLREMRRPGLD------------------NLRR--LQIAKRINERCRK-----TRTC 165
Query: 285 DINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSL 344
+ G ++ A ++ H K + +T + + + + D+S
Sbjct: 166 EACGAINGVVKKAGNSALKIT-HDKFRAFNVSTSVKKVPPPSKIV----------FDRSF 214
Query: 345 DKSLNKSSNQIIRKREQGYVMASEVEADFKKLWT--NEHLFLKCLIPVLDTTKELI---- 398
D++ ++SN +EVE +KK N L V DT EL+
Sbjct: 215 DEA--RTSN-------------AEVEKHYKKAQDDMNALRVLNLFKKVSDTDCELLGLNP 259
Query: 399 --ATDIMFIRSLV-VPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKE 455
A MF+ + PP +RP + E I+ S +LK+ +M
Sbjct: 260 KEARPEMFLWQFIPAPPVCIRPSVGQDAASTEDDLTAKLGDIVQSNINLKNALM------ 313
Query: 456 QSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKL-NINKTTGAHQIDGLKQMLD 514
KG T+ W +Q + + +++ + +NK I G Q L
Sbjct: 314 ---------KGAPVQTI----VECWDYMQLQIAVYINSDVPGLNKADLGKPIRGFVQRLK 360
Query: 515 GKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRK 574
GK G R N+ GKRV+F+GR+VI+PDP L +D + VP AK +TYP VT +N L++
Sbjct: 361 GKQGRFRGNLSGKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQ 420
Query: 575 MVINGPNVYPGANMI 589
V NG +PGAN I
Sbjct: 421 RVRNGTKKWPGANYI 435
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 37/59 (62%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 72
F R+VI+PDP L +D + VP AK +TYP VT +N L++ V NG +PGAN I
Sbjct: 377 FSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQRVRNGTKKWPGANYI 435
>gi|395836506|ref|XP_003791195.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Otolemur
garnettii]
Length = 1970
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 134/481 (27%), Positives = 214/481 (44%), Gaps = 95/481 (19%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E+K++SV + + P T G GGL D G I ER C TC N T+C GH GH
Sbjct: 30 ELKRMSVTEGGIKYPETTEG-GRPKLGGLMDPRQGVI-ERTGRCQTCAGNMTECPGHFGH 87
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
IEL PV + F +L+ CF C K+ L+ N K+ KD+
Sbjct: 88 IELAKPVFHVGFLVKTMKVLRCVCFFCSKL-------LVDSNNPKI---------KDILA 131
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQV------L 304
+ RL +HV L G IC+ GGEE+ + F + L
Sbjct: 132 KSKGQPKKRL----------THVYD-LCKGKNICE-----GGEEMDNKFGVEQPEGDEDL 175
Query: 305 SRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGY 363
++ ++ C YQ R I + L+ + K +N+ S +E+
Sbjct: 176 TK--EKGHGGCG------RYQPR-------IRRSGLELYAEWKHVNEDS------QEKKI 214
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQM 423
+++ E + K ++E F VL + M + L VPP ++RP + Q
Sbjct: 215 LLSPERVHEIFKRISDEECF------VLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQ- 267
Query: 424 PPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHEL 483
+RN+ + + + + ++ EQ+ + + + KL L
Sbjct: 268 ---GSARNQ--DDLTHKLADIVKINNQLRRNEQNGAAAHVI------AEDVKL------L 310
Query: 484 QYNVDLLMDAKL-----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
Q++V ++D +L + K+ + LKQ L GK G +R N+MGKRV+F+ R+VIT
Sbjct: 311 QFHVATMVDNELPGLPRAMQKS--GRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVR 598
PDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I ++G +
Sbjct: 369 PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRID 428
Query: 599 I 599
+
Sbjct: 429 L 429
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I
Sbjct: 361 FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII 420
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 421 RDNGDRIDL 429
>gi|345800197|ref|XP_857844.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1 isoform 3 [Canis lupus familiaris]
Length = 1970
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 134/481 (27%), Positives = 214/481 (44%), Gaps = 95/481 (19%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E+K++SV + + P T G GGL D G I ER C TC N T+C GH GH
Sbjct: 30 ELKRMSVTEGGIKYPETTEG-GRPKLGGLMDPRQGVI-ERTGRCQTCAGNMTECPGHFGH 87
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
IEL PV + F +L+ CF C K+ L+ N K+ KD+
Sbjct: 88 IELAKPVFHVGFLVKTMKVLRCVCFFCSKL-------LVDSNNPKI---------KDILA 131
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQV------L 304
+ RL +HV L G IC+ GGEE+ + F + L
Sbjct: 132 KSKGQPKKRL----------THVYD-LCKGKNICE-----GGEEMDNKFGVEQPEGDEDL 175
Query: 305 SRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGY 363
++ ++ C YQ R I + L+ + K +N+ S +E+
Sbjct: 176 TK--EKGHGGCG------RYQPR-------IRRSGLELYAEWKHVNEDS------QEKKI 214
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQM 423
+++ E + K ++E F VL + M + L VPP ++RP + Q
Sbjct: 215 LLSPERVHEIFKRISDEECF------VLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQ- 267
Query: 424 PPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHEL 483
+RN+ + + + + ++ EQ+ + + + KL L
Sbjct: 268 ---GSARNQ--DDLTHKLADIVKINNQLRRNEQNGAAAHVI------AEDVKL------L 310
Query: 484 QYNVDLLMDAKL-----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
Q++V ++D +L + K+ + LKQ L GK G +R N+MGKRV+F+ R+VIT
Sbjct: 311 QFHVATMVDNELPGLPRAMQKS--GRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVR 598
PDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I ++G +
Sbjct: 369 PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRID 428
Query: 599 I 599
+
Sbjct: 429 L 429
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I
Sbjct: 361 FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII 420
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 421 RDNGDRIDL 429
>gi|402898581|ref|XP_003912299.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Papio
anubis]
Length = 1970
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 134/481 (27%), Positives = 214/481 (44%), Gaps = 95/481 (19%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E+K++SV + + P T G GGL D G I ER C TC N T+C GH GH
Sbjct: 30 ELKRMSVTEGGIKYPETTEG-GRPKLGGLMDPRQGVI-ERTGRCQTCAGNMTECPGHFGH 87
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
IEL PV + F +L+ CF C K+ L+ N K+ KD+
Sbjct: 88 IELAKPVFHVGFLVKTMKVLRCVCFFCSKL-------LVDSNNPKI---------KDILS 131
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQV------L 304
+ RL +HV L G IC+ GGEE+ + F + L
Sbjct: 132 KSKGQPKKRL----------THVYD-LCKGKNICE-----GGEEMDNKFGVEQPEGDEDL 175
Query: 305 SRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGY 363
++ ++ C YQ R I + L+ + K +N+ S +E+
Sbjct: 176 TK--EKGHGGCG------RYQPR-------IRRSGLELYAEWKHVNEDS------QEKKI 214
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQM 423
+++ E + K ++E F VL + M + L VPP ++RP + Q
Sbjct: 215 LLSPERVHEIFKRISDEECF------VLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQ- 267
Query: 424 PPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHEL 483
+RN+ + + + + ++ EQ+ + + + KL L
Sbjct: 268 ---GSARNQ--DDLTHKLADIVKINNQLRRNEQNGAAAHVI------AEDVKL------L 310
Query: 484 QYNVDLLMDAKL-----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
Q++V ++D +L + K+ + LKQ L GK G +R N+MGKRV+F+ R+VIT
Sbjct: 311 QFHVATMVDNELPGLPRAMQKS--GRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVR 598
PDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I ++G +
Sbjct: 369 PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRID 428
Query: 599 I 599
+
Sbjct: 429 L 429
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I
Sbjct: 361 FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII 420
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 421 RDNGDRIDL 429
>gi|281352199|gb|EFB27783.1| hypothetical protein PANDA_013866 [Ailuropoda melanoleuca]
Length = 1989
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 134/481 (27%), Positives = 214/481 (44%), Gaps = 95/481 (19%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E+K++SV + + P T G GGL D G I ER C TC N T+C GH GH
Sbjct: 30 ELKRMSVTEGGIKYPETTEG-GRPKLGGLMDPRQGVI-ERTGRCQTCAGNMTECPGHFGH 87
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
IEL PV + F +L+ CF C K+ L+ N K+ KD+
Sbjct: 88 IELAKPVFHVGFLVKTMKVLRCVCFFCSKL-------LVDSNNPKI---------KDILA 131
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQV------L 304
+ RL +HV L G IC+ GGEE+ + F + L
Sbjct: 132 KSKGQPKKRL----------THVYD-LCKGKNICE-----GGEEMDNKFGVEQPEGDEDL 175
Query: 305 SRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGY 363
++ ++ C YQ R I + L+ + K +N+ S +E+
Sbjct: 176 TK--EKGHGGCG------RYQPR-------IRRSGLELYAEWKHVNEDS------QEKKI 214
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQM 423
+++ E + K ++E F VL + M + L VPP ++RP + Q
Sbjct: 215 LLSPERVHEIFKRISDEECF------VLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQ- 267
Query: 424 PPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHEL 483
+RN+ + + + + ++ EQ+ + + + KL L
Sbjct: 268 ---GSARNQ--DDLTHKLADIVKINNQLRRNEQNGAAAHVI------AEDVKL------L 310
Query: 484 QYNVDLLMDAKL-----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
Q++V ++D +L + K+ + LKQ L GK G +R N+MGKRV+F+ R+VIT
Sbjct: 311 QFHVATMVDNELPGLPRAMQKS--GRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVR 598
PDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I ++G +
Sbjct: 369 PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRID 428
Query: 599 I 599
+
Sbjct: 429 L 429
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I
Sbjct: 361 FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII 420
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 421 RDNGDRIDL 429
>gi|242011894|ref|XP_002426678.1| predicted protein [Pediculus humanus corporis]
gi|212510849|gb|EEB13940.1| predicted protein [Pediculus humanus corporis]
Length = 1885
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 135/483 (27%), Positives = 205/483 (42%), Gaps = 104/483 (21%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E++++SV + P T+ G GGL D G + +R C TC N T+C GH GH
Sbjct: 25 EIRRMSVTDGGIKYPETYEG-GRPKIGGLMDPRQG-VVDRMSRCQTCAGNMTECPGHFGH 82
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
I+L PV + F +L+ CF C K+ L+ N K+ + VT++
Sbjct: 83 IDLAKPVFHVGFLTKTIKILRCVCFFCSKL-------LVSPNNAKIKE--IVTKS----- 128
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEEL---RSAFVAQVLSRH 307
R P + + V L G IC+ GG+E+ + S+
Sbjct: 129 --------RGQPRKRLTFVYD-----LCKGKNICE-----GGDEMDITKDNADNPDNSKD 170
Query: 308 VKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMAS 367
K C YQ I + LD + + NQ E+ +++
Sbjct: 171 KKGGHGGCG------RYQP-------NIRRTGLDLTAEWKHTNEDNQ-----EKKIALSA 212
Query: 368 EVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVE 427
E + K T+E +CLI +D + D M + L VPP ++RP
Sbjct: 213 ERVWEILKHITDE----ECLILGMD--PKFARPDWMLVTVLPVPPLSVRP---------- 256
Query: 428 HSRNKLYQSILYSCGSLKSVIMAMKNKEQSDL---LSEALKGIRGDTLNNKLQNSWHELQ 484
+V+M + Q DL L++ +K N + + H +
Sbjct: 257 ------------------AVVMYGSARNQDDLTHKLADIIKANNELIRNEQAGAAAHIIS 298
Query: 485 YNVDLLMD--AKLNINKTTG---AHQIDG-----LKQMLDGKTGMIRQNMMGKRVNFAGR 534
N+ +L A L N G A Q G LK L GK G IR N+MGKRV+F+ R
Sbjct: 299 ENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKALKARLKGKEGRIRGNLMGKRVDFSAR 358
Query: 535 SVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDG 594
+VITPDP L ID +GVP A+ LT+P +TP+N+ ++++V G + YPGA I ++G
Sbjct: 359 TVITPDPNLRIDQVGVPRSIAQNLTFPEIITPFNIDKMQELVRRGNSQYPGAKYIIRDNG 418
Query: 595 SVV 597
+
Sbjct: 419 ERI 421
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 44/67 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ LT+P +TP+N+ ++++V G + YPGA I
Sbjct: 355 FSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIITPFNIDKMQELVRRGNSQYPGAKYII 414
Query: 74 NEDGSVV 80
++G +
Sbjct: 415 RDNGERI 421
>gi|426383941|ref|XP_004058535.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Gorilla gorilla gorilla]
Length = 1883
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 134/479 (27%), Positives = 213/479 (44%), Gaps = 95/479 (19%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E+K++SV + + P T G GGL D G I ER C TC N T+C GH GH
Sbjct: 30 ELKRMSVTEGGIKYPETTEG-GRPKLGGLMDPRQGVI-ERTGRCQTCAGNMTECPGHFGH 87
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
IEL PV + F +L+ CF C K+ L+ N K+ KD+
Sbjct: 88 IELAKPVFHVGFLVKTMKVLRCVCFFCSKL-------LVDSNNPKI---------KDILA 131
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQV------L 304
+ RL +HV L G IC+ GGEE+ + F + L
Sbjct: 132 KSKGQPKKRL----------THVYD-LCKGKNICE-----GGEEMDNKFGVEQPEGDEDL 175
Query: 305 SRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGY 363
++ ++ C YQ R I + L+ + K +N+ S +E+
Sbjct: 176 TK--EKGHGGCG------RYQPR-------IRRSGLELYAEWKHVNEDS------QEKKI 214
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQM 423
+++ E + K ++E F VL + M + L VPP ++RP + Q
Sbjct: 215 LLSPERVHEIFKRISDEECF------VLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQ- 267
Query: 424 PPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHEL 483
+RN+ + + + + ++ EQ+ + + + KL L
Sbjct: 268 ---GSARNQ--DDLTHKLADIVKINNQLRRNEQNGAAAHVI------AEDVKL------L 310
Query: 484 QYNVDLLMDAKL-----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
Q++V ++D +L + K+ + LKQ L GK G +R N+MGKRV+F+ R+VIT
Sbjct: 311 QFHVATMVDNELPGLPRAMQKS--GRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
PDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I ++G +
Sbjct: 369 PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRI 427
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I
Sbjct: 361 FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII 420
Query: 74 NEDGSVV 80
++G +
Sbjct: 421 RDNGDRI 427
>gi|2145091|gb|AAB58418.1| RNA polymerase II largest subunit [Mus musculus]
Length = 1966
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 134/481 (27%), Positives = 214/481 (44%), Gaps = 95/481 (19%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E+K++SV + + P T G GGL D G I ER C TC N T+C GH GH
Sbjct: 30 ELKRMSVTEGGIKYPETTEG-GRPKLGGLMDPRQGVI-ERTGRCQTCAGNMTECPGHFGH 87
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
IEL PV + F +L+ CF C K+ L+ N K+ KD+
Sbjct: 88 IELAKPVFHVGFLVKTMKVLRCVCFFCSKL-------LVDSNNPKI---------KDILA 131
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQV------L 304
+ RL +HV L G IC+ GGEE+ + F + L
Sbjct: 132 KSKGQPKKRL----------THVYD-LCKGKNICE-----GGEEMDNKFGVEQPEGDEDL 175
Query: 305 SRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGY 363
++ ++ C YQ R I + L+ + K +N+ S +E+
Sbjct: 176 TK--EKGHGGCG------RYQPR-------IRRSGLELYAEWKHVNEDS------QEKKI 214
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQM 423
+++ E + K ++E F VL + M + L VPP ++RP + Q
Sbjct: 215 LLSPERVHEIFKRISDEECF------VLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQ- 267
Query: 424 PPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHEL 483
+RN+ + + + + ++ EQ+ + + + KL L
Sbjct: 268 ---GSARNQ--DDLTHKLADIVKINNQLRRNEQNGAAAHVI------AEDVKL------L 310
Query: 484 QYNVDLLMDAKL-----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
Q++V ++D +L + K+ + LKQ L GK G +R N+MGKRV+F+ R+VIT
Sbjct: 311 QFHVATMVDNELPGLPRAMQKS--GRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVR 598
PDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I ++G +
Sbjct: 369 PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRID 428
Query: 599 I 599
+
Sbjct: 429 L 429
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I
Sbjct: 361 FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII 420
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 421 RDNGDRIDL 429
>gi|2443334|dbj|BAA22376.1| RNA polymerase II largest subunit [Cricetulus griseus]
Length = 1970
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 134/481 (27%), Positives = 214/481 (44%), Gaps = 95/481 (19%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E+K++SV + + P T G GGL D G I ER C TC N T+C GH GH
Sbjct: 30 ELKRMSVTEGGIKYPETTEG-GRPKLGGLMDPRQGVI-ERTGRCQTCAGNMTECPGHFGH 87
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
IEL PV + F +L+ CF C K+ L+ N K+ KD+
Sbjct: 88 IELAKPVFHVGFLVKTMKVLRCVCFFCSKL-------LVDSNNPKI---------KDILA 131
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQV------L 304
+ RL +HV L G IC+ GGEE+ + F + L
Sbjct: 132 KSKGQPKKRL----------THVYD-LCKGKNICE-----GGEEMDNKFGVEQPEGDEDL 175
Query: 305 SRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGY 363
++ ++ C YQ R I + L+ + K +N+ S +E+
Sbjct: 176 TK--EKGHGGCG------RYQPR-------IRRSGLELYAEWKHVNEDS------QEKKI 214
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQM 423
+++ E + K ++E F VL + M + L VPP ++RP + Q
Sbjct: 215 LLSPERVHEIFKRISDEECF------VLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQ- 267
Query: 424 PPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHEL 483
+RN+ + + + + ++ EQ+ + + + KL L
Sbjct: 268 ---GSARNQ--DDLTHKLADIVKINNQLRRNEQNGAAAHVI------AEDVKL------L 310
Query: 484 QYNVDLLMDAKL-----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
Q++V ++D +L + K+ + LKQ L GK G +R N+MGKRV+F+ R+VIT
Sbjct: 311 QFHVATMVDNELPGLPRAMQKS--GRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVR 598
PDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I ++G +
Sbjct: 369 PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRID 428
Query: 599 I 599
+
Sbjct: 429 L 429
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I
Sbjct: 361 FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII 420
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 421 RDNGDRIDL 429
>gi|390462987|ref|XP_003732945.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Callithrix jacchus]
Length = 1899
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 127/455 (27%), Positives = 202/455 (44%), Gaps = 92/455 (20%)
Query: 157 GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFL 216
GGL D G I ER C TC N T+C GH GHIEL PV + F +L+ CF
Sbjct: 22 GGLMDPRQGVI-ERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFF 80
Query: 217 CHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSI 276
C K+ L+ N K+ KD+ + RL +HV
Sbjct: 81 CSKL-------LVDSNNPKI---------KDILAKSKGQPKKRL----------THVYD- 113
Query: 277 LAHGTKICDINDYKGGEELRSAFVAQV------LSRHVKRKCIFCATPINAISYQQRKII 330
L G IC+ GGEE+ + F + L++ ++ C YQ R
Sbjct: 114 LCKGKNICE-----GGEEMDNKFGVEQPEGDEDLTK--EKGHGGCG------RYQPR--- 157
Query: 331 KSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIP 389
I + L+ + K +N+ S +E+ +++ E + K ++E F
Sbjct: 158 ----IRRSGLELYAEWKHVNEDS------QEKKILLSPERVHEIFKRISDEECF------ 201
Query: 390 VLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIM 449
VL + M + L VPP ++RP + Q +RN+ + + + +
Sbjct: 202 VLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQ----GSARNQ--DDLTHKLADIVKINN 255
Query: 450 AMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKL-----NINKTTGAH 504
++ EQ+ + + + KL LQ++V ++D +L + K+
Sbjct: 256 QLRRNEQNGAAAHVI------AEDVKL------LQFHVATMVDNELPGLPRAMQKS--GR 301
Query: 505 QIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPV 564
+ LKQ L GK G +R N+MGKRV+F+ R+VITPDP L+ID +GVP A +T+ V
Sbjct: 302 PLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIV 361
Query: 565 TPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
TP+N+ L+++V G + YPGA I ++G + +
Sbjct: 362 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL 396
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I
Sbjct: 328 FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII 387
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 388 RDNGDRIDL 396
>gi|296201388|ref|XP_002748007.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Callithrix jacchus]
Length = 1937
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 127/455 (27%), Positives = 202/455 (44%), Gaps = 92/455 (20%)
Query: 157 GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFL 216
GGL D G I ER C TC N T+C GH GHIEL PV + F +L+ CF
Sbjct: 22 GGLMDPRQGVI-ERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFF 80
Query: 217 CHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSI 276
C K+ L+ N K+ KD+ + RL +HV
Sbjct: 81 CSKL-------LVDSNNPKI---------KDILAKSKGQPKKRL----------THVYD- 113
Query: 277 LAHGTKICDINDYKGGEELRSAFVAQV------LSRHVKRKCIFCATPINAISYQQRKII 330
L G IC+ GGEE+ + F + L++ ++ C YQ R
Sbjct: 114 LCKGKNICE-----GGEEMDNKFGVEQPEGDEDLTK--EKGHGGCG------RYQPR--- 157
Query: 331 KSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIP 389
I + L+ + K +N+ S +E+ +++ E + K ++E F
Sbjct: 158 ----IRRSGLELYAEWKHVNEDS------QEKKILLSPERVHEIFKRISDEECF------ 201
Query: 390 VLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIM 449
VL + M + L VPP ++RP + Q +RN+ + + + +
Sbjct: 202 VLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQ----GSARNQ--DDLTHKLADIVKINN 255
Query: 450 AMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKL-----NINKTTGAH 504
++ EQ+ + + + KL LQ++V ++D +L + K+
Sbjct: 256 QLRRNEQNGAAAHVI------AEDVKL------LQFHVATMVDNELPGLPRAMQKS--GR 301
Query: 505 QIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPV 564
+ LKQ L GK G +R N+MGKRV+F+ R+VITPDP L+ID +GVP A +T+ V
Sbjct: 302 PLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIV 361
Query: 565 TPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
TP+N+ L+++V G + YPGA I ++G + +
Sbjct: 362 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL 396
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I
Sbjct: 328 FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII 387
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 388 RDNGDRIDL 396
>gi|825713|emb|CAA52862.1| RNA polymerase II largest subunit [Homo sapiens]
Length = 1970
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 134/481 (27%), Positives = 214/481 (44%), Gaps = 95/481 (19%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E+K++SV + + P T G GGL D G I ER C TC N T+C GH GH
Sbjct: 30 ELKRMSVTEGGIKYPETTEG-GRPKLGGLMDPRQGVI-ERTGRCQTCAGNMTECPGHFGH 87
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
IEL PV + F +L+ CF C K+ L+ N K+ KD+
Sbjct: 88 IELAKPVFHVGFLVKTMKVLRCVCFFCSKL-------LVDSNNPKI---------KDILA 131
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQV------L 304
+ RL +HV L G IC+ GGEE+ + F + L
Sbjct: 132 KSKGQPKKRL----------THVYD-LCKGKNICE-----GGEEMDNKFGVEQPEGDEDL 175
Query: 305 SRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGY 363
++ ++ C YQ R I + L+ + K +N+ S +E+
Sbjct: 176 TK--EKGHGGCG------RYQPR-------IRRSGLELYAEWKHVNEDS------QEKKI 214
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQM 423
+++ E + K ++E F VL + M + L VPP ++RP + Q
Sbjct: 215 LLSPERVHEIFKRISDEECF------VLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQ- 267
Query: 424 PPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHEL 483
+RN+ + + + + ++ EQ+ + + + KL L
Sbjct: 268 ---GSARNQ--DDLTHKLADIVKINNQLRRNEQNGAAAHVI------AEDVKL------L 310
Query: 484 QYNVDLLMDAKL-----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
Q++V ++D +L + K+ + LKQ L GK G +R N+MGKRV+F+ R+VIT
Sbjct: 311 QFHVATMVDNELPGLPRAMQKS--GRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVR 598
PDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I ++G +
Sbjct: 369 PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRID 428
Query: 599 I 599
+
Sbjct: 429 L 429
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I
Sbjct: 361 FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII 420
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 421 RDNGDRIDL 429
>gi|324120588|dbj|BAJ78685.1| RNA polymerase II largest subunit [Stenopsyche marmorata]
Length = 1754
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 132/483 (27%), Positives = 201/483 (41%), Gaps = 101/483 (20%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E++++SV + + P T G GGL D G I +R C TC N T+C GH GH
Sbjct: 25 EIRRMSVTEGGIRFPETMEG-GRPKLGGLMDPRQGVI-DRNSRCQTCAGNMTECPGHFGH 82
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
I+L PV + F +L+ CF C K+ + T+ I ++ + G +
Sbjct: 83 IDLAKPVFHIGFITKTIKVLRCVCFYCSKLLVTPTNPK--IKEVVMKSKGQPRK------ 134
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKR 310
+L + D L G IC+ GGE++ K
Sbjct: 135 -------------RLAYVYD------LCKGKNICE-----GGEDMDLGGGDGTEEGAKKG 170
Query: 311 KCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGYVMASEV 369
A YQ I + LD + + K +N+ S +E+ V+++E
Sbjct: 171 A----AGHGGCGHYQP-------SIHRSGLDLTAEWKHVNEDS------QEKKIVISAER 213
Query: 370 EADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHS 429
+ K T+E F+ + P + D M I + VPP +RP
Sbjct: 214 VWEILKHITDEECFILGMDP------KFARPDWMIITVMPVPPLCVRP------------ 255
Query: 430 RNKLYQSILYSCGSLKSVIMAMKNKEQSDL---LSEALKGIRGDTLNNKLQNSWHELQYN 486
+V+M K Q DL LS+ +K N + + H +Q N
Sbjct: 256 ----------------AVVMFGAAKNQDDLTHKLSDIIKTNNELIRNEQAGAAAHVIQEN 299
Query: 487 VDLLMD--AKLNINKTTG--------AHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSV 536
+ +L A N G + +K L GK G IR N+MGKRV+F+ R+V
Sbjct: 300 IKMLQFHVATFVDNDMPGMPRAVQKSGKPLKAVKARLKGKEGRIRGNLMGKRVDFSARTV 359
Query: 537 ITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSV 596
ITPDP L ID +GVP A+ LT+P VTP+N+ ++K+V G + YPGA I ++G
Sbjct: 360 ITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQKLVRRGNSQYPGAKYIVRDNGER 419
Query: 597 VRI 599
+ +
Sbjct: 420 IDL 422
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 45/69 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ LT+P VTP+N+ ++K+V G + YPGA I
Sbjct: 354 FSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQKLVRRGNSQYPGAKYIV 413
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 414 RDNGERIDL 422
>gi|395748505|ref|XP_002827010.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1 [Pongo abelii]
Length = 1967
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 134/481 (27%), Positives = 214/481 (44%), Gaps = 95/481 (19%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E+K++SV + + P T G GGL D G I ER C TC N T+C GH GH
Sbjct: 30 ELKRMSVTEGGIKYPETTEG-GRPKLGGLMDPRQGVI-ERTGRCQTCAGNMTECPGHFGH 87
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
IEL PV + F +L+ CF C K+ L+ N K+ KD+
Sbjct: 88 IELAKPVFHVGFLVKTMKVLRCVCFFCSKL-------LVDSNNPKI---------KDILA 131
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQV------L 304
+ RL +HV L G IC+ GGEE+ + F + L
Sbjct: 132 KSKGQPKKRL----------THVYD-LCKGKNICE-----GGEEMDNKFGVEQPEGDEDL 175
Query: 305 SRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGY 363
++ ++ C YQ R I + L+ + K +N+ S +E+
Sbjct: 176 TK--EKGHGGCG------RYQPR-------IRRSGLELYAEWKHVNEDS------QEKKI 214
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQM 423
+++ E + K ++E F VL + M + L VPP ++RP + Q
Sbjct: 215 LLSPERVHEIFKRISDEECF------VLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQ- 267
Query: 424 PPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHEL 483
+RN+ + + + + ++ EQ+ + + + KL L
Sbjct: 268 ---GSARNQ--DDLTHKLADIVKINNQLRRNEQNGAAAHVI------AEDVKL------L 310
Query: 484 QYNVDLLMDAKL-----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
Q++V ++D +L + K+ + LKQ L GK G +R N+MGKRV+F+ R+VIT
Sbjct: 311 QFHVATMVDNELPGLPRAMQKS--GRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVR 598
PDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I ++G +
Sbjct: 369 PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRID 428
Query: 599 I 599
+
Sbjct: 429 L 429
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I
Sbjct: 361 FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII 420
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 421 RDNGDRIDL 429
>gi|332024635|gb|EGI64832.1| DNA-directed RNA polymerase III subunit RPC1 [Acromyrmex echinatior]
Length = 1988
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 127/501 (25%), Positives = 215/501 (42%), Gaps = 86/501 (17%)
Query: 104 QHRAIMKEKIITRQEVVPEILKLKYYTD--QEVKQLSVVKVFSPITFNSLGHTIPG--GL 159
+ R M ++ V E+ + + D ++ + V++ S +N P G
Sbjct: 605 KSRPSMVKEQFRETNVASEVSHISFGVDSMHDINMQASVEMISKNLYNEDTKHTPALQGA 664
Query: 160 YDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHK 219
D MG +S G C TC C GH G++ L +PV + +F+ + +L+ C C
Sbjct: 665 LDRRMG-VSSTGVECETCNKKLNDCVGHFGYLNLELPVFHVGYFKSIIQILQTICKSCAH 723
Query: 220 INIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAH 279
+ + + F I+ +GY+ + K L + + +A
Sbjct: 724 VLLTHGERKFFSRSIQNPKSGYLMR-KALRKKILE----------------------VAR 760
Query: 280 GTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDN 339
+C G ++ F+ V H K K + PI Q++ + KI++D
Sbjct: 761 KKTVCPNCKSNNGPVKKAGFLKIV---HEKYKNLKKTDPI----IQEKLTELTPKIERDT 813
Query: 340 LDQSLDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFL----KCLIPVLDTTK 395
Q R Y+ + V+ F ++ T + FL C PV
Sbjct: 814 -------EFKNIVEQNYRCVFDKYLYPNVVQELFNRIPTGDICFLLMNPGCATPV----- 861
Query: 396 ELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKE 455
+ +R + VPP +RP + + + N+ Y + MK E
Sbjct: 862 ------DLVLRRIPVPPICIRPSILSDL---KAGTNEDY--------------LTMKLSE 898
Query: 456 QSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLN------INKTTGAHQIDGL 509
+ L+++ ++ +G +N ++ W LQ + L ++++++ K +G G+
Sbjct: 899 IA-LINDVIRKQKGVNINTYMEQ-WDFLQLHCGLYINSEMSGIPLHMQPKKSGR----GI 952
Query: 510 KQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNV 569
Q L GK G R N+ GKRV+F R+VI+PDP L I+ +GVP+ AKTLTYP V P N+
Sbjct: 953 VQRLKGKQGRFRGNLSGKRVDFTSRTVISPDPNLRIEQVGVPIHVAKTLTYPERVIPSNM 1012
Query: 570 TLLRKMVINGPNVYPGANMIQ 590
L+RK+V NGP+ +PGAN IQ
Sbjct: 1013 ELMRKLVRNGPDTHPGANYIQ 1033
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 60/96 (62%), Gaps = 7/96 (7%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L I+ +GVP+ AKTLTYP V P N+ L+RK+V NGP+ +PGAN IQ
Sbjct: 974 FTSRTVISPDPNLRIEQVGVPIHVAKTLTYPERVIPSNMELMRKLVRNGPDTHPGANYIQ 1033
Query: 74 NED-------GSVVRISSSQAVQRESLAKRLITPED 102
++ G R ++Q +Q + +R + +D
Sbjct: 1034 YKNSQNRRYLGYGDRNKAAQDLQYGDIVERHLKDDD 1069
>gi|126309154|ref|XP_001364909.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Monodelphis domestica]
Length = 1932
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 134/481 (27%), Positives = 214/481 (44%), Gaps = 95/481 (19%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E+K++SV + + P T G GGL D G I ER C TC N T+C GH GH
Sbjct: 30 ELKRMSVTEGGIKYPETTEG-GRPKLGGLMDPRQGVI-ERTGRCQTCAGNMTECPGHFGH 87
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
IEL PV + F +L+ CF C K+ L+ N K+ KD+
Sbjct: 88 IELAKPVFHVGFLVKTMKVLRCVCFFCSKL-------LVDSNNPKI---------KDILG 131
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQV------L 304
+ RL +HV L G IC+ GGEE+ + F + L
Sbjct: 132 KSKGQPKKRL----------THVYD-LCKGKNICE-----GGEEMDNKFGVEQPEGDEDL 175
Query: 305 SRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGY 363
++ ++ C YQ R I + L+ + K +N+ S +E+
Sbjct: 176 TK--EKGHGGCG------RYQPR-------IRRTGLELYAEWKHVNEDS------QEKKI 214
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQM 423
+++ E + K ++E F VL + M + L VPP ++RP + Q
Sbjct: 215 LLSPERVHEIFKRISDEECF------VLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQ- 267
Query: 424 PPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHEL 483
+RN+ + + + + ++ EQ+ + + + KL L
Sbjct: 268 ---GSARNQ--DDLTHKLADIVKINNQLRRNEQNGAAAHVI------AEDVKL------L 310
Query: 484 QYNVDLLMDAKL-----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
Q++V ++D +L + K+ + LKQ L GK G +R N+MGKRV+F+ R+VIT
Sbjct: 311 QFHVATMVDNELPGLPRAMQKS--GRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVR 598
PDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I ++G +
Sbjct: 369 PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRID 428
Query: 599 I 599
+
Sbjct: 429 L 429
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I
Sbjct: 361 FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII 420
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 421 RDNGDRIDL 429
>gi|432105605|gb|ELK31799.1| DNA-directed RNA polymerase II subunit RPB1 [Myotis davidii]
Length = 1970
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 134/481 (27%), Positives = 214/481 (44%), Gaps = 95/481 (19%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E+K++SV + + P T G GGL D G I ER C TC N T+C GH GH
Sbjct: 30 ELKRMSVTEGGIKYPETTEG-GRPKLGGLMDPRQGVI-ERTGRCQTCAGNMTECPGHFGH 87
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
IEL PV + F +L+ CF C K+ L+ N K+ KD+
Sbjct: 88 IELAKPVFHVGFLVKTMKVLRCVCFFCSKL-------LVDSNNPKI---------KDILA 131
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQV------L 304
+ RL +HV L G IC+ GGEE+ + F + L
Sbjct: 132 KSKGQPKKRL----------THVYD-LCKGKNICE-----GGEEMDNKFGVEQPEGDEDL 175
Query: 305 SRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGY 363
++ ++ C YQ R I + L+ + K +N+ S +E+
Sbjct: 176 TK--EKGHGGCG------RYQPR-------IRRSGLELYAEWKHVNEDS------QEKKI 214
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQM 423
+++ E + K ++E F VL + M + L VPP ++RP + Q
Sbjct: 215 LLSPERVHEIFKRISDEECF------VLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQ- 267
Query: 424 PPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHEL 483
+RN+ + + + + ++ EQ+ + + + KL L
Sbjct: 268 ---GSARNQ--DDLTHKLADIVKINNQLRRNEQNGAAAHVI------AEDVKL------L 310
Query: 484 QYNVDLLMDAKL-----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
Q++V ++D +L + K+ + LKQ L GK G +R N+MGKRV+F+ R+VIT
Sbjct: 311 QFHVATMVDNELPGLPRAMQKS--GRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVR 598
PDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I ++G +
Sbjct: 369 PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRID 428
Query: 599 I 599
+
Sbjct: 429 L 429
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I
Sbjct: 361 FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII 420
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 421 RDNGDRIDL 429
>gi|329663165|ref|NP_001193242.1| DNA-directed RNA polymerase II subunit RPB1 [Bos taurus]
Length = 1970
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 134/481 (27%), Positives = 214/481 (44%), Gaps = 95/481 (19%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E+K++SV + + P T G GGL D G I ER C TC N T+C GH GH
Sbjct: 30 ELKRMSVTEGGIKYPETTEG-GRPKLGGLMDPRQGVI-ERTGRCQTCAGNMTECPGHFGH 87
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
IEL PV + F +L+ CF C K+ L+ N K+ KD+
Sbjct: 88 IELAKPVFHVGFLVKTMKVLRCVCFFCSKL-------LVDSNNPKI---------KDILA 131
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQV------L 304
+ RL +HV L G IC+ GGEE+ + F + L
Sbjct: 132 KSKGQPKKRL----------THVYD-LCKGKNICE-----GGEEMDNKFGVEQPEGDEDL 175
Query: 305 SRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGY 363
++ ++ C YQ R I + L+ + K +N+ S +E+
Sbjct: 176 TK--EKGHGGCG------RYQPR-------IRRSGLELYAEWKHVNEDS------QEKKI 214
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQM 423
+++ E + K ++E F VL + M + L VPP ++RP + Q
Sbjct: 215 LLSPERVHEIFKRISDEECF------VLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQ- 267
Query: 424 PPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHEL 483
+RN+ + + + + ++ EQ+ + + + KL L
Sbjct: 268 ---GSARNQ--DDLTHKLADIVKINNQLRRNEQNGAAAHVI------AEDVKL------L 310
Query: 484 QYNVDLLMDAKL-----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
Q++V ++D +L + K+ + LKQ L GK G +R N+MGKRV+F+ R+VIT
Sbjct: 311 QFHVATMVDNELPGLPRAMQKS--GRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVR 598
PDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I ++G +
Sbjct: 369 PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRID 428
Query: 599 I 599
+
Sbjct: 429 L 429
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I
Sbjct: 361 FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII 420
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 421 RDNGDRIDL 429
>gi|444722932|gb|ELW63604.1| DNA-directed RNA polymerase II subunit RPB1 [Tupaia chinensis]
Length = 1801
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 134/481 (27%), Positives = 214/481 (44%), Gaps = 95/481 (19%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E+K++SV + + P T G GGL D G I ER C TC N T+C GH GH
Sbjct: 30 ELKRMSVTEGGIKYPETTEG-GRPKLGGLMDPRQGVI-ERTGRCQTCAGNMTECPGHFGH 87
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
IEL PV + F +L+ CF C K+ L+ N K+ KD+
Sbjct: 88 IELAKPVFHVGFLVKTMKVLRCVCFFCSKL-------LVDSNNPKI---------KDILA 131
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQV------L 304
+ RL +HV L G IC+ GGEE+ + F + L
Sbjct: 132 KSKGQPKKRL----------THVYD-LCKGKNICE-----GGEEMDNKFGVEQPEGDEDL 175
Query: 305 SRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGY 363
++ ++ C YQ R I + L+ + K +N+ S +E+
Sbjct: 176 TK--EKGHGGCG------RYQPR-------IRRSGLELYAEWKHVNEDS------QEKKI 214
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQM 423
+++ E + K ++E F VL + M + L VPP ++RP + Q
Sbjct: 215 LLSPERVHEIFKRISDEECF------VLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQ- 267
Query: 424 PPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHEL 483
+RN+ + + + + ++ EQ+ + + + KL L
Sbjct: 268 ---GSARNQ--DDLTHKLADIVKINNQLRRNEQNGAAAHVI------AEDVKL------L 310
Query: 484 QYNVDLLMDAKL-----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
Q++V ++D +L + K+ + LKQ L GK G +R N+MGKRV+F+ R+VIT
Sbjct: 311 QFHVATMVDNELPGLPRAMQKS--GRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVR 598
PDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I ++G +
Sbjct: 369 PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRID 428
Query: 599 I 599
+
Sbjct: 429 L 429
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I
Sbjct: 361 FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII 420
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 421 RDNGDRIDL 429
>gi|350590849|ref|XP_003483150.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Sus scrofa]
Length = 1092
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 132/479 (27%), Positives = 213/479 (44%), Gaps = 95/479 (19%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E+K++SV + + P T G GGL D G I ER C TC N T+C GH GH
Sbjct: 30 ELKRMSVTEGGIKYPETTEG-GRPKLGGLMDPRQGVI-ERTGRCQTCAGNMTECPGHFGH 87
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
IEL PV + F +L+ CF C K+ + + + +IK + A Q K
Sbjct: 88 IELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNP-----KIKDILAKSKGQPK---- 138
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQV------L 304
+L + D L G IC+ GGEE+ + F + L
Sbjct: 139 ------------KRLTHVYD------LCKGKNICE-----GGEEMDNKFGVEQPEGDEDL 175
Query: 305 SRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGY 363
++ ++ C YQ R I + L+ + K +N+ S +E+
Sbjct: 176 TK--EKGHGGCG------RYQPR-------IRRSGLELYAEWKHVNEDS------QEKKI 214
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQM 423
+++ E + K ++E F VL + M + L VPP ++RP + Q
Sbjct: 215 LLSPERVHEIFKRISDEECF------VLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQ- 267
Query: 424 PPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHEL 483
+RN+ + + + + ++ EQ+ + + + KL L
Sbjct: 268 ---GSARNQ--DDLTHKLADIVKINNQLRRNEQNGAAAHVI------AEDVKL------L 310
Query: 484 QYNVDLLMDAKL-----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
Q++V ++D +L + K+ + LKQ L GK G +R N+MGKRV+F+ R+VIT
Sbjct: 311 QFHVATMVDNELPGLPRAMQKS--GRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
PDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I ++G +
Sbjct: 369 PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRI 427
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I
Sbjct: 361 FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII 420
Query: 74 NEDGSVV 80
++G +
Sbjct: 421 RDNGDRI 427
>gi|301778185|ref|XP_002924473.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Ailuropoda melanoleuca]
Length = 1970
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 134/481 (27%), Positives = 214/481 (44%), Gaps = 95/481 (19%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E+K++SV + + P T G GGL D G I ER C TC N T+C GH GH
Sbjct: 30 ELKRMSVTEGGIKYPETTEG-GRPKLGGLMDPRQGVI-ERTGRCQTCAGNMTECPGHFGH 87
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
IEL PV + F +L+ CF C K+ L+ N K+ KD+
Sbjct: 88 IELAKPVFHVGFLVKTMKVLRCVCFFCSKL-------LVDSNNPKI---------KDILA 131
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQV------L 304
+ RL +HV L G IC+ GGEE+ + F + L
Sbjct: 132 KSKGQPKKRL----------THVYD-LCKGKNICE-----GGEEMDNKFGVEQPEGDEDL 175
Query: 305 SRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGY 363
++ ++ C YQ R I + L+ + K +N+ S +E+
Sbjct: 176 TK--EKGHGGCG------RYQPR-------IRRSGLELYAEWKHVNEDS------QEKKI 214
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQM 423
+++ E + K ++E F VL + M + L VPP ++RP + Q
Sbjct: 215 LLSPERVHEIFKRISDEECF------VLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQ- 267
Query: 424 PPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHEL 483
+RN+ + + + + ++ EQ+ + + + KL L
Sbjct: 268 ---GSARNQ--DDLTHKLADIVKINNQLRRNEQNGAAAHVI------AEDVKL------L 310
Query: 484 QYNVDLLMDAKL-----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
Q++V ++D +L + K+ + LKQ L GK G +R N+MGKRV+F+ R+VIT
Sbjct: 311 QFHVATMVDNELPGLPRAMQKS--GRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVR 598
PDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I ++G +
Sbjct: 369 PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRID 428
Query: 599 I 599
+
Sbjct: 429 L 429
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I
Sbjct: 361 FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII 420
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 421 RDNGDRIDL 429
>gi|443728942|gb|ELU15060.1| hypothetical protein CAPTEDRAFT_170227 [Capitella teleta]
Length = 1916
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 127/483 (26%), Positives = 206/483 (42%), Gaps = 102/483 (21%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E++++SV + + P T G GGL D G I +R C TC N ++C GH GH
Sbjct: 27 EIRRMSVTEGGIKYPETTEG-GRPKVGGLMDPRQGVI-DRVSRCQTCAGNMSECPGHFGH 84
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
++L PV + F +L+ CF C K+ L+D + + +D+
Sbjct: 85 VDLAKPVYHVGFLTKTIKVLRCFCFFCSKL---------------LVDPAH-PKIRDIVS 128
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKR 310
+ RL +HV L G IC+ D E+ + + +
Sbjct: 129 KSKGKGRQRL----------AHVYD-LCKGKNICEGGDEIDKEQSEPGAEEKKVRKQQAS 177
Query: 311 KCIFCATPINAISYQQRKIIKSFK-IDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEV 369
C I ++ +K +++D+ D+ + V+++E
Sbjct: 178 SHGGCGRYQPKIRRTGLTLMAEWKHVNEDSQDKKI-------------------VLSAER 218
Query: 370 EADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHS 429
+ K ++E + + P + D M I+ L VPP ++RP
Sbjct: 219 ALEIFKRISDEESNIIGMDP------KWARPDWMIIQVLPVPPLSVRP------------ 260
Query: 430 RNKLYQSILYSCGSLKSVIMAMKNKEQSDL---LSEALK---GIRGDTLNNKLQNSWHE- 482
+V+M + Q DL L++ +K ++ + LN + E
Sbjct: 261 ----------------AVVMYGSARNQDDLTHKLADIIKINNQLKRNELNGAAAHILDED 304
Query: 483 ---LQYNVDLLMDAKL-----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGR 534
LQ++V L+D ++ + K+ + LKQ L GK G IR N+MGKRV+F+GR
Sbjct: 305 TKMLQFHVATLVDNEMPGLPRAVQKS--GRPLKSLKQRLKGKEGRIRGNLMGKRVDFSGR 362
Query: 535 SVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDG 594
+VITPDP L I +GVP A+ LT+P VTP+N+ L ++V G N YPGA I ++G
Sbjct: 363 TVITPDPMLAITQVGVPRSIAQNLTFPEIVTPFNIDSLSELVRRGANQYPGAKYIIRDNG 422
Query: 595 SVV 597
V
Sbjct: 423 DRV 425
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 42/67 (62%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L I +GVP A+ LT+P VTP+N+ L ++V G N YPGA I
Sbjct: 359 FSGRTVITPDPMLAITQVGVPRSIAQNLTFPEIVTPFNIDSLSELVRRGANQYPGAKYII 418
Query: 74 NEDGSVV 80
++G V
Sbjct: 419 RDNGDRV 425
>gi|133327|sp|P08775.3|RPB1_MOUSE RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase II subunit A; AltName:
Full=DNA-directed RNA polymerase III largest subunit
Length = 1970
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 134/481 (27%), Positives = 214/481 (44%), Gaps = 95/481 (19%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E+K++SV + + P T G GGL D G I ER C TC N T+C GH GH
Sbjct: 30 ELKRMSVTEGGIKYPETTEG-GRPKLGGLMDPRQGVI-ERTGRCQTCAGNMTECPGHFGH 87
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
IEL PV + F +L+ CF C K+ L+ N K+ KD+
Sbjct: 88 IELAKPVFHVGFLVKTMKVLRCVCFFCSKL-------LVDSNNPKI---------KDILA 131
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQV------L 304
+ RL +HV L G IC+ GGEE+ + F + L
Sbjct: 132 KSKGQPKKRL----------THVYD-LCKGKNICE-----GGEEMDNKFGVEQPEGDEDL 175
Query: 305 SRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGY 363
++ ++ C YQ R I + L+ + K +N+ S +E+
Sbjct: 176 TK--EKGHGGCG------RYQPR-------IRRSGLELYAEWKHVNEDS------QEKKI 214
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQM 423
+++ E + K ++E F VL + M + L VPP ++RP + Q
Sbjct: 215 LLSPERVHEIFKRISDEECF------VLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQ- 267
Query: 424 PPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHEL 483
+RN+ + + + + ++ EQ+ + + + KL L
Sbjct: 268 ---GSARNQ--DDLTHKLADIVKINNQLRRNEQNGAAAHVI------AEDVKL------L 310
Query: 484 QYNVDLLMDAKL-----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
Q++V ++D +L + K+ + LKQ L GK G +R N+MGKRV+F+ R+VIT
Sbjct: 311 QFHVATMVDNELPGLPRAMQKS--GRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVR 598
PDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I ++G +
Sbjct: 369 PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRID 428
Query: 599 I 599
+
Sbjct: 429 L 429
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I
Sbjct: 361 FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII 420
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 421 RDNGDRIDL 429
>gi|109488292|ref|XP_343923.3| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Rattus norvegicus]
gi|109491096|ref|XP_001079162.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Rattus norvegicus]
Length = 1970
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 134/481 (27%), Positives = 214/481 (44%), Gaps = 95/481 (19%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E+K++SV + + P T G GGL D G I ER C TC N T+C GH GH
Sbjct: 30 ELKRMSVTEGGIKYPETTEG-GRPKLGGLMDPRQGVI-ERTGRCQTCAGNMTECPGHFGH 87
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
IEL PV + F +L+ CF C K+ L+ N K+ KD+
Sbjct: 88 IELAKPVFHVGFLVKTMKVLRCVCFFCSKL-------LVDSNNPKI---------KDILA 131
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQV------L 304
+ RL +HV L G IC+ GGEE+ + F + L
Sbjct: 132 KSKGQPKKRL----------THVYD-LCKGKNICE-----GGEEMDNKFGVEQPEGDEDL 175
Query: 305 SRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGY 363
++ ++ C YQ R I + L+ + K +N+ S +E+
Sbjct: 176 TK--EKGHGGCG------RYQPR-------IRRSGLELYAEWKHVNEDS------QEKKI 214
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQM 423
+++ E + K ++E F VL + M + L VPP ++RP + Q
Sbjct: 215 LLSPERVHEIFKRISDEECF------VLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQ- 267
Query: 424 PPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHEL 483
+RN+ + + + + ++ EQ+ + + + KL L
Sbjct: 268 ---GSARNQ--DDLTHKLADIVKINNQLRRNEQNGAAAHVI------AEDVKL------L 310
Query: 484 QYNVDLLMDAKL-----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
Q++V ++D +L + K+ + LKQ L GK G +R N+MGKRV+F+ R+VIT
Sbjct: 311 QFHVATMVDNELPGLPRAMQKS--GRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVR 598
PDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I ++G +
Sbjct: 369 PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRID 428
Query: 599 I 599
+
Sbjct: 429 L 429
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I
Sbjct: 361 FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII 420
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 421 RDNGDRIDL 429
>gi|431894008|gb|ELK03814.1| DNA-directed RNA polymerase II subunit RPB1 [Pteropus alecto]
Length = 1975
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 134/481 (27%), Positives = 214/481 (44%), Gaps = 95/481 (19%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E+K++SV + + P T G GGL D G I ER C TC N T+C GH GH
Sbjct: 30 ELKRMSVTEGGIKYPETTEG-GRPKLGGLMDPRQGVI-ERTGRCQTCAGNMTECPGHFGH 87
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
IEL PV + F +L+ CF C K+ L+ N K+ KD+
Sbjct: 88 IELAKPVFHVGFLVKTMKVLRCVCFFCSKL-------LVDSNNPKI---------KDILA 131
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQV------L 304
+ RL +HV L G IC+ GGEE+ + F + L
Sbjct: 132 KSKGQPKKRL----------THVYD-LCKGKNICE-----GGEEMDNKFGVEQPEGDEDL 175
Query: 305 SRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGY 363
++ ++ C YQ R I + L+ + K +N+ S +E+
Sbjct: 176 TK--EKGHGGCG------RYQPR-------IRRSGLELYAEWKHVNEDS------QEKKI 214
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQM 423
+++ E + K ++E F VL + M + L VPP ++RP + Q
Sbjct: 215 LLSPERVHEIFKRISDEECF------VLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQ- 267
Query: 424 PPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHEL 483
+RN+ + + + + ++ EQ+ + + + KL L
Sbjct: 268 ---GSARNQ--DDLTHKLADIVKINNQLRRNEQNGAAAHVI------AEDVKL------L 310
Query: 484 QYNVDLLMDAKL-----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
Q++V ++D +L + K+ + LKQ L GK G +R N+MGKRV+F+ R+VIT
Sbjct: 311 QFHVATMVDNELPGLPRAMQKS--GRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVR 598
PDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I ++G +
Sbjct: 369 PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRID 428
Query: 599 I 599
+
Sbjct: 429 L 429
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I
Sbjct: 361 FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII 420
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 421 RDNGDRIDL 429
>gi|324120546|dbj|BAJ78664.1| RNA polymerase II largest subunit [Forficula hiromasai]
Length = 1744
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 137/484 (28%), Positives = 205/484 (42%), Gaps = 106/484 (21%)
Query: 133 EVKQLSVVKVFSPITFNSL---GHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
EV+++SV I F+ G GGL D G + +R C TC N +C GH G
Sbjct: 25 EVRRMSVT-TEGGIRFSETYEGGRPKLGGLMDPRQG-VMDRITRCQTCAGNQVECPGHFG 82
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLE 249
HIEL PV + F +L+ CF C K+ + T+ I ++ + G +
Sbjct: 83 HIELAKPVFHIGFLVKAIKILRCVCFYCSKLLVSPTNPK--IKEVVMKTKGQPRK----- 135
Query: 250 ETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQ--VLSRH 307
+LV + D L G IC+ GG+E+ Q L+R
Sbjct: 136 --------------RLVYVYD------LCKGKNICE-----GGDEIDMPKENQEEALARG 170
Query: 308 VKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGYVMA 366
K C YQ I + LD + + K +N+ S +E+ V+
Sbjct: 171 KKVGHGGCG------RYQP-------SIRRSGLDLTAEWKHVNEDS------QEKKIVLT 211
Query: 367 SEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPV 426
++ + K T+E F+ + P + D M + L VPP +RP
Sbjct: 212 AQRVWEIFKHITDEECFILGMDP------KFARPDWMILTVLPVPPLAVRP--------- 256
Query: 427 EHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDL---LSEALKGIRGDTLNNKLQNSWHEL 483
+V+M + Q DL LS+ +K N + + H L
Sbjct: 257 -------------------AVVMYGSARNQDDLTHKLSDIIKANNELQHNEQAGGATHVL 297
Query: 484 QYNVDLLMD--AKLNINKTTG---AHQIDG-----LKQMLDGKTGMIRQNMMGKRVNFAG 533
N+ LL A L N G A Q G +K L GK G IR N+MGKRV+F+
Sbjct: 298 AENIKLLQFHVATLIDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSA 357
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
R+VITPDP L ID +GVP A+ +T+P VTP+N++ ++++V G + YPGA I ++
Sbjct: 358 RTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNLSKMQELVQRGNSQYPGAKYIVRDN 417
Query: 594 GSVV 597
G +
Sbjct: 418 GDRI 421
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 45/67 (67%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ +T+P VTP+N++ ++++V G + YPGA I
Sbjct: 355 FSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNLSKMQELVQRGNSQYPGAKYIV 414
Query: 74 NEDGSVV 80
++G +
Sbjct: 415 RDNGDRI 421
>gi|344290440|ref|XP_003416946.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Loxodonta
africana]
Length = 1970
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 134/481 (27%), Positives = 214/481 (44%), Gaps = 95/481 (19%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E+K++SV + + P T G GGL D G I ER C TC N T+C GH GH
Sbjct: 30 ELKRMSVTEGGIKYPETTEG-GRPKLGGLMDPRQGVI-ERTGRCQTCAGNMTECPGHFGH 87
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
IEL PV + F +L+ CF C K+ L+ N K+ KD+
Sbjct: 88 IELAKPVFHVGFLVKTMKVLRCVCFFCSKL-------LVDSNNPKI---------KDILA 131
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQV------L 304
+ RL +HV L G IC+ GGEE+ + F + L
Sbjct: 132 KSKGQPKKRL----------THVYD-LCKGKNICE-----GGEEMDNKFGVEQPEGDEDL 175
Query: 305 SRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGY 363
++ ++ C YQ R I + L+ + K +N+ S +E+
Sbjct: 176 TK--EKGHGGCG------RYQPR-------IRRSGLELYAEWKHVNEDS------QEKKI 214
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQM 423
+++ E + K ++E F VL + M + L VPP ++RP + Q
Sbjct: 215 LLSPERVHEIFKRISDEECF------VLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQ- 267
Query: 424 PPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHEL 483
+RN+ + + + + ++ EQ+ + + + KL L
Sbjct: 268 ---GSARNQ--DDLTHKLADIVKINNQLRRNEQNGAAAHVI------AEDVKL------L 310
Query: 484 QYNVDLLMDAKL-----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
Q++V ++D +L + K+ + LKQ L GK G +R N+MGKRV+F+ R+VIT
Sbjct: 311 QFHVATMVDNELPGLPRAMQKS--GRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVR 598
PDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I ++G +
Sbjct: 369 PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRID 428
Query: 599 I 599
+
Sbjct: 429 L 429
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I
Sbjct: 361 FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII 420
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 421 RDNGDRIDL 429
>gi|281185484|sp|P24928.2|RPB1_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase II subunit A; AltName:
Full=DNA-directed RNA polymerase III largest subunit;
AltName: Full=RNA-directed RNA polymerase II subunit
RPB1
Length = 1970
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 134/481 (27%), Positives = 214/481 (44%), Gaps = 95/481 (19%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E+K++SV + + P T G GGL D G I ER C TC N T+C GH GH
Sbjct: 30 ELKRMSVTEGGIKYPETTEG-GRPKLGGLMDPRQGVI-ERTGRCQTCAGNMTECPGHFGH 87
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
IEL PV + F +L+ CF C K+ L+ N K+ KD+
Sbjct: 88 IELAKPVFHVGFLVKTMKVLRCVCFFCSKL-------LVDSNNPKI---------KDILA 131
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQV------L 304
+ RL +HV L G IC+ GGEE+ + F + L
Sbjct: 132 KSKGQPKKRL----------THVYD-LCKGKNICE-----GGEEMDNKFGVEQPEGDEDL 175
Query: 305 SRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGY 363
++ ++ C YQ R I + L+ + K +N+ S +E+
Sbjct: 176 TK--EKGHGGCG------RYQPR-------IRRSGLELYAEWKHVNEDS------QEKKI 214
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQM 423
+++ E + K ++E F VL + M + L VPP ++RP + Q
Sbjct: 215 LLSPERVHEIFKRISDEECF------VLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQ- 267
Query: 424 PPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHEL 483
+RN+ + + + + ++ EQ+ + + + KL L
Sbjct: 268 ---GSARNQ--DDLTHKLADIVKINNQLRRNEQNGAAAHVI------AEDVKL------L 310
Query: 484 QYNVDLLMDAKL-----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
Q++V ++D +L + K+ + LKQ L GK G +R N+MGKRV+F+ R+VIT
Sbjct: 311 QFHVATMVDNELPGLPRAMQKS--GRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVR 598
PDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I ++G +
Sbjct: 369 PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRID 428
Query: 599 I 599
+
Sbjct: 429 L 429
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I
Sbjct: 361 FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII 420
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 421 RDNGDRIDL 429
>gi|4505939|ref|NP_000928.1| DNA-directed RNA polymerase II subunit RPB1 [Homo sapiens]
gi|345842509|ref|NP_001230931.1| polymerase (RNA) II (DNA directed) polypeptide A [Cricetulus
griseus]
gi|332251063|ref|XP_003274666.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Nomascus
leucogenys]
gi|403274932|ref|XP_003929214.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Saimiri
boliviensis boliviensis]
gi|36124|emb|CAA45125.1| RNA polymerase II largest subunit [Homo sapiens]
gi|2443336|dbj|BAA22377.1| RNA polymerase II largest subunit [Cricetulus griseus]
gi|14328881|dbj|BAB60684.1| RNA polymerase II largest subunit [Cricetulus griseus]
gi|119610587|gb|EAW90181.1| polymerase (RNA) II (DNA directed) polypeptide A, 220kDa, isoform
CRA_a [Homo sapiens]
gi|223460954|gb|AAI37232.1| Polymerase (RNA) II (DNA directed) polypeptide A, 220kDa [Homo
sapiens]
Length = 1970
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 134/481 (27%), Positives = 214/481 (44%), Gaps = 95/481 (19%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E+K++SV + + P T G GGL D G I ER C TC N T+C GH GH
Sbjct: 30 ELKRMSVTEGGIKYPETTEG-GRPKLGGLMDPRQGVI-ERTGRCQTCAGNMTECPGHFGH 87
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
IEL PV + F +L+ CF C K+ L+ N K+ KD+
Sbjct: 88 IELAKPVFHVGFLVKTMKVLRCVCFFCSKL-------LVDSNNPKI---------KDILA 131
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQV------L 304
+ RL +HV L G IC+ GGEE+ + F + L
Sbjct: 132 KSKGQPKKRL----------THVYD-LCKGKNICE-----GGEEMDNKFGVEQPEGDEDL 175
Query: 305 SRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGY 363
++ ++ C YQ R I + L+ + K +N+ S +E+
Sbjct: 176 TK--EKGHGGCG------RYQPR-------IRRSGLELYAEWKHVNEDS------QEKKI 214
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQM 423
+++ E + K ++E F VL + M + L VPP ++RP + Q
Sbjct: 215 LLSPERVHEIFKRISDEECF------VLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQ- 267
Query: 424 PPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHEL 483
+RN+ + + + + ++ EQ+ + + + KL L
Sbjct: 268 ---GSARNQ--DDLTHKLADIVKINNQLRRNEQNGAAAHVI------AEDVKL------L 310
Query: 484 QYNVDLLMDAKL-----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
Q++V ++D +L + K+ + LKQ L GK G +R N+MGKRV+F+ R+VIT
Sbjct: 311 QFHVATMVDNELPGLPRAMQKS--GRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVR 598
PDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I ++G +
Sbjct: 369 PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRID 428
Query: 599 I 599
+
Sbjct: 429 L 429
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I
Sbjct: 361 FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII 420
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 421 RDNGDRIDL 429
>gi|351701567|gb|EHB04486.1| DNA-directed RNA polymerase II subunit RPB1 [Heterocephalus glaber]
gi|417406836|gb|JAA50059.1| Putative rna polymerase i large subunit [Desmodus rotundus]
Length = 1970
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 134/481 (27%), Positives = 214/481 (44%), Gaps = 95/481 (19%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E+K++SV + + P T G GGL D G I ER C TC N T+C GH GH
Sbjct: 30 ELKRMSVTEGGIKYPETTEG-GRPKLGGLMDPRQGVI-ERTGRCQTCAGNMTECPGHFGH 87
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
IEL PV + F +L+ CF C K+ L+ N K+ KD+
Sbjct: 88 IELAKPVFHVGFLVKTMKVLRCVCFFCSKL-------LVDSNNPKI---------KDILA 131
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQV------L 304
+ RL +HV L G IC+ GGEE+ + F + L
Sbjct: 132 KSKGQPKKRL----------THVYD-LCKGKNICE-----GGEEMDNKFGVEQPEGDEDL 175
Query: 305 SRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGY 363
++ ++ C YQ R I + L+ + K +N+ S +E+
Sbjct: 176 TK--EKGHGGCG------RYQPR-------IRRSGLELYAEWKHVNEDS------QEKKI 214
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQM 423
+++ E + K ++E F VL + M + L VPP ++RP + Q
Sbjct: 215 LLSPERVHEIFKRISDEECF------VLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQ- 267
Query: 424 PPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHEL 483
+RN+ + + + + ++ EQ+ + + + KL L
Sbjct: 268 ---GSARNQ--DDLTHKLADIVKINNQLRRNEQNGAAAHVI------AEDVKL------L 310
Query: 484 QYNVDLLMDAKL-----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
Q++V ++D +L + K+ + LKQ L GK G +R N+MGKRV+F+ R+VIT
Sbjct: 311 QFHVATMVDNELPGLPRAMQKS--GRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVR 598
PDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I ++G +
Sbjct: 369 PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRID 428
Query: 599 I 599
+
Sbjct: 429 L 429
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I
Sbjct: 361 FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII 420
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 421 RDNGDRIDL 429
>gi|380793277|gb|AFE68514.1| DNA-directed RNA polymerase II subunit RPB1, partial [Macaca
mulatta]
Length = 1658
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 134/479 (27%), Positives = 213/479 (44%), Gaps = 95/479 (19%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E+K++SV + + P T G GGL D G I ER C TC N T+C GH GH
Sbjct: 30 ELKRMSVTEGGIKYPETTEG-GRPKLGGLMDPRQGVI-ERTGRCQTCAGNMTECPGHFGH 87
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
IEL PV + F +L+ CF C K+ L+ N K+ KD+
Sbjct: 88 IELAKPVFHVGFLVKTMKVLRCVCFFCSKL-------LVDSNNPKI---------KDILS 131
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQV------L 304
+ RL +HV L G IC+ GGEE+ + F + L
Sbjct: 132 KSKGQPKKRL----------THVYD-LCKGKNICE-----GGEEMDNKFGVEQPEGDEDL 175
Query: 305 SRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGY 363
++ ++ C YQ R I + L+ + K +N+ S +E+
Sbjct: 176 TK--EKGHGGCG------RYQPR-------IRRSGLELYAEWKHVNEDS------QEKKI 214
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQM 423
+++ E + K ++E F VL + M + L VPP ++RP + Q
Sbjct: 215 LLSPERVHEIFKRISDEECF------VLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQ- 267
Query: 424 PPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHEL 483
+RN+ + + + + ++ EQ+ + + + KL L
Sbjct: 268 ---GSARNQ--DDLTHKLADIVKINNQLRRNEQNGAAAHVI------AEDVKL------L 310
Query: 484 QYNVDLLMDAKL-----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
Q++V ++D +L + K+ + LKQ L GK G +R N+MGKRV+F+ R+VIT
Sbjct: 311 QFHVATMVDNELPGLPRAMQKS--GRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
PDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I ++G +
Sbjct: 369 PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRI 427
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I
Sbjct: 361 FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII 420
Query: 74 NEDGSVV 80
++G +
Sbjct: 421 RDNGDRI 427
>gi|397477903|ref|XP_003846225.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1 [Pan paniscus]
Length = 1719
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 134/481 (27%), Positives = 214/481 (44%), Gaps = 95/481 (19%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E+K++SV + + P T G GGL D G I ER C TC N T+C GH GH
Sbjct: 30 ELKRMSVTEGGIKYPETTEG-GRPKLGGLMDPRQGVI-ERTGRCQTCAGNMTECPGHFGH 87
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
IEL PV + F +L+ CF C K+ L+ N K+ KD+
Sbjct: 88 IELAKPVFHVGFLVKTMKVLRCVCFFCSKL-------LVDSNNPKI---------KDILA 131
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQV------L 304
+ RL +HV L G IC+ GGEE+ + F + L
Sbjct: 132 KSKGQPKKRL----------THVYD-LCKGKNICE-----GGEEMDNKFGVEQPEGDEDL 175
Query: 305 SRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGY 363
++ ++ C YQ R I + L+ + K +N+ S +E+
Sbjct: 176 TK--EKGHGGCG------RYQPR-------IRRSGLELYAEWKHVNEDS------QEKKI 214
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQM 423
+++ E + K ++E F VL + M + L VPP ++RP + Q
Sbjct: 215 LLSPERVHEIFKRISDEECF------VLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQ- 267
Query: 424 PPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHEL 483
+RN+ + + + + ++ EQ+ + + + KL L
Sbjct: 268 ---GSARNQ--DDLTHKLADIVKINNQLRRNEQNGAAAHVI------AEDVKL------L 310
Query: 484 QYNVDLLMDAKL-----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
Q++V ++D +L + K+ + LKQ L GK G +R N+MGKRV+F+ R+VIT
Sbjct: 311 QFHVATMVDNELPGLPRAMQKS--GRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVR 598
PDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I ++G +
Sbjct: 369 PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRID 428
Query: 599 I 599
+
Sbjct: 429 L 429
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I
Sbjct: 361 FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII 420
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 421 RDNGDRIDL 429
>gi|426238812|ref|XP_004013338.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Ovis aries]
Length = 1897
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 134/479 (27%), Positives = 213/479 (44%), Gaps = 95/479 (19%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E+K++SV + + P T G GGL D G I ER C TC N T+C GH GH
Sbjct: 30 ELKRMSVTEGGIKYPETTEG-GRPKLGGLMDPRQGVI-ERTGRCQTCAGNMTECPGHFGH 87
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
IEL PV + F +L+ CF C K+ L+ N K+ KD+
Sbjct: 88 IELAKPVFHVGFLVKTMKVLRCVCFFCSKL-------LVDSNNPKI---------KDILA 131
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQV------L 304
+ RL +HV L G IC+ GGEE+ + F + L
Sbjct: 132 KSKGQPKKRL----------THVYD-LCKGKNICE-----GGEEMDNKFGVEQPEGDEDL 175
Query: 305 SRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGY 363
++ ++ C YQ R I + L+ + K +N+ S +E+
Sbjct: 176 TK--EKGHGGCG------RYQPR-------IRRSGLELYAEWKHVNEDS------QEKKI 214
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQM 423
+++ E + K ++E F VL + M + L VPP ++RP + Q
Sbjct: 215 LLSPERVHEIFKRISDEECF------VLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQ- 267
Query: 424 PPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHEL 483
+RN+ + + + + ++ EQ+ + + + KL L
Sbjct: 268 ---GSARNQ--DDLTHKLADIVKINNQLRRNEQNGAAAHVI------AEDVKL------L 310
Query: 484 QYNVDLLMDAKL-----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
Q++V ++D +L + K+ + LKQ L GK G +R N+MGKRV+F+ R+VIT
Sbjct: 311 QFHVATMVDNELPGLPRAMQKS--GRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
PDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I ++G +
Sbjct: 369 PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRI 427
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I
Sbjct: 361 FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII 420
Query: 74 NEDGSVV 80
++G +
Sbjct: 421 RDNGDRI 427
>gi|296476824|tpg|DAA18939.1| TPA: polymerase (RNA) II (DNA directed) polypeptide A, 220kDa [Bos
taurus]
Length = 1323
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 132/479 (27%), Positives = 213/479 (44%), Gaps = 95/479 (19%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E+K++SV + + P T G GGL D G I ER C TC N T+C GH GH
Sbjct: 30 ELKRMSVTEGGIKYPETTEG-GRPKLGGLMDPRQGVI-ERTGRCQTCAGNMTECPGHFGH 87
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
IEL PV + F +L+ CF C K+ + + + +IK + A Q K
Sbjct: 88 IELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNP-----KIKDILAKSKGQPK---- 138
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQV------L 304
+L + D L G IC+ GGEE+ + F + L
Sbjct: 139 ------------KRLTHVYD------LCKGKNICE-----GGEEMDNKFGVEQPEGDEDL 175
Query: 305 SRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGY 363
++ ++ C YQ R I + L+ + K +N+ S +E+
Sbjct: 176 TK--EKGHGGCG------RYQPR-------IRRSGLELYAEWKHVNEDS------QEKKI 214
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQM 423
+++ E + K ++E F VL + M + L VPP ++RP + Q
Sbjct: 215 LLSPERVHEIFKRISDEECF------VLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQ- 267
Query: 424 PPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHEL 483
+RN+ + + + + ++ EQ+ + + + KL L
Sbjct: 268 ---GSARNQ--DDLTHKLADIVKINNQLRRNEQNGAAAHVI------AEDVKL------L 310
Query: 484 QYNVDLLMDAKL-----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
Q++V ++D +L + K+ + LKQ L GK G +R N+MGKRV+F+ R+VIT
Sbjct: 311 QFHVATMVDNELPGLPRAMQKS--GRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
PDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I ++G +
Sbjct: 369 PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRI 427
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I
Sbjct: 361 FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII 420
Query: 74 NEDGSVV 80
++G +
Sbjct: 421 RDNGDRI 427
>gi|426383939|ref|XP_004058534.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Gorilla gorilla gorilla]
Length = 1921
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 134/481 (27%), Positives = 214/481 (44%), Gaps = 95/481 (19%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E+K++SV + + P T G GGL D G I ER C TC N T+C GH GH
Sbjct: 30 ELKRMSVTEGGIKYPETTEG-GRPKLGGLMDPRQGVI-ERTGRCQTCAGNMTECPGHFGH 87
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
IEL PV + F +L+ CF C K+ L+ N K+ KD+
Sbjct: 88 IELAKPVFHVGFLVKTMKVLRCVCFFCSKL-------LVDSNNPKI---------KDILA 131
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQV------L 304
+ RL +HV L G IC+ GGEE+ + F + L
Sbjct: 132 KSKGQPKKRL----------THVYD-LCKGKNICE-----GGEEMDNKFGVEQPEGDEDL 175
Query: 305 SRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGY 363
++ ++ C YQ R I + L+ + K +N+ S +E+
Sbjct: 176 TK--EKGHGGCG------RYQPR-------IRRSGLELYAEWKHVNEDS------QEKKI 214
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQM 423
+++ E + K ++E F VL + M + L VPP ++RP + Q
Sbjct: 215 LLSPERVHEIFKRISDEECF------VLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQ- 267
Query: 424 PPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHEL 483
+RN+ + + + + ++ EQ+ + + + KL L
Sbjct: 268 ---GSARNQ--DDLTHKLADIVKINNQLRRNEQNGAAAHVI------AEDVKL------L 310
Query: 484 QYNVDLLMDAKL-----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
Q++V ++D +L + K+ + LKQ L GK G +R N+MGKRV+F+ R+VIT
Sbjct: 311 QFHVATMVDNELPGLPRAMQKS--GRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVR 598
PDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I ++G +
Sbjct: 369 PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRID 428
Query: 599 I 599
+
Sbjct: 429 L 429
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I
Sbjct: 361 FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII 420
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 421 RDNGDRIDL 429
>gi|308229954|gb|ADO24384.1| RNA polymerase II large subunit, partial [Drosophila nigromaculata]
Length = 1872
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 129/457 (28%), Positives = 193/457 (42%), Gaps = 100/457 (21%)
Query: 157 GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFL 216
GGL D G I +R C TC N T+C GH GHI+L PV + F +L+ CF
Sbjct: 44 GGLMDPRQGVI-DRTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFY 102
Query: 217 CHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSI 276
C K+ + + I +I + G + +L + D
Sbjct: 103 CSKMLVSPHNPK--IKEIVMKSKGQPRK-------------------RLAYVYD------ 135
Query: 277 LAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKID 336
L G IC+ GGE++ Q + + K C YQ I
Sbjct: 136 LCKGKTICE-----GGEDMDLTKDNQQVDPNKKPGHGGCG------HYQP-------SIR 177
Query: 337 KDNLDQSLD-KSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTK 395
+ LD + + K +N+ S +E+ V+++E + K T+E F+ + P
Sbjct: 178 RTGLDLTAEWKHVNEDS------QEKKIVVSAERVWEILKHITDEECFILGMDP------ 225
Query: 396 ELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKE 455
+ D M + L VPP +RP +V+M K
Sbjct: 226 KYARPDWMIVTVLPVPPLAVRP----------------------------AVVMFGAAKN 257
Query: 456 QSDL---LSEALKGIRGDTLNNKLQNSWHELQYNVDLLMD--AKLNINKTTG---AHQID 507
Q DL L++ +K N + H +Q N+ +L A L N G A Q
Sbjct: 258 QDDLTHKLADIIKANNELRKNEASGAAAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKS 317
Query: 508 G-----LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPV 562
G +K L GK G IR N+MGKRV+F+ R+VITPDP L ID +GVP A+ LT+P
Sbjct: 318 GKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPE 377
Query: 563 PVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
VTP+N+ ++++V G + YPGA I ++G + +
Sbjct: 378 LVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDL 414
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ LT+P VTP+N+ ++++V G + YPGA I
Sbjct: 346 FSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIV 405
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 406 RDNGERIDL 414
>gi|45501363|gb|AAH67295.1| POLR2A protein [Homo sapiens]
Length = 566
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 132/479 (27%), Positives = 213/479 (44%), Gaps = 95/479 (19%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E+K++SV + + P T G GGL D G I ER C TC N T+C GH GH
Sbjct: 30 ELKRMSVTEGGIKYPETTEG-GRPKLGGLMDPRQGVI-ERTGRCQTCAGNMTECPGHFGH 87
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
IEL PV + F +L+ CF C K+ + + + +IK + A Q K
Sbjct: 88 IELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNP-----KIKDILAKSKGQPK---- 138
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQV------L 304
+L + D L G IC+ GGEE+ + F + L
Sbjct: 139 ------------KRLTHVYD------LCKGKNICE-----GGEEMDNKFGVEQPEGDEDL 175
Query: 305 SRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGY 363
++ ++ C YQ R I + L+ + K +N+ S +E+
Sbjct: 176 TK--EKGHGGCG------RYQPR-------IRRSGLELYAEWKHVNEDS------QEKKI 214
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQM 423
+++ E + K ++E F VL + M + L VPP ++RP + Q
Sbjct: 215 LLSPERVHEIFKRISDEECF------VLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQ- 267
Query: 424 PPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHEL 483
+RN+ + + + + ++ EQ+ + + + KL L
Sbjct: 268 ---GSARNQ--DDLTHKLADIVKINNQLRRNEQNGAAAHVI------AEDVKL------L 310
Query: 484 QYNVDLLMDAKL-----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
Q++V ++D +L + K+ + LKQ L GK G +R N+MGKRV+F+ R+VIT
Sbjct: 311 QFHVATMVDNELPGLPRAMQKS--GRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
PDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I ++G +
Sbjct: 369 PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRI 427
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I
Sbjct: 361 FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII 420
Query: 74 NEDGSVV 80
++G +
Sbjct: 421 RDNGDRI 427
>gi|194217622|ref|XP_001918406.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1-like [Equus caballus]
Length = 1834
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 134/481 (27%), Positives = 214/481 (44%), Gaps = 95/481 (19%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E+K++SV + + P T G GGL D G I ER C TC N T+C GH GH
Sbjct: 30 ELKRMSVTEGGIKYPETTEG-GRPKLGGLMDPRQGVI-ERTGRCQTCAGNMTECPGHFGH 87
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
IEL PV + F +L+ CF C K+ L+ N K+ KD+
Sbjct: 88 IELAKPVFHVGFLVKTMKVLRCVCFFCSKL-------LVDSNNPKI---------KDILA 131
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQV------L 304
+ RL +HV L G IC+ GGEE+ + F + L
Sbjct: 132 KSKGQPKKRL----------THVYD-LCKGKNICE-----GGEEMDNKFGVEQPEGDEDL 175
Query: 305 SRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGY 363
++ ++ C YQ R I + L+ + K +N+ S +E+
Sbjct: 176 TK--EKGHGGCG------RYQPR-------IRRSGLELYAEWKHVNEDS------QEKKI 214
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQM 423
+++ E + K ++E F VL + M + L VPP ++RP + Q
Sbjct: 215 LLSPERVHEIFKRISDEECF------VLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQ- 267
Query: 424 PPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHEL 483
+RN+ + + + + ++ EQ+ + + + KL L
Sbjct: 268 ---GSARNQ--DDLTHKLADIVKINNQLRRNEQNGAAAHVI------AEDVKL------L 310
Query: 484 QYNVDLLMDAKL-----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
Q++V ++D +L + K+ + LKQ L GK G +R N+MGKRV+F+ R+VIT
Sbjct: 311 QFHVATMVDNELPGLPRAMQKS--GRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVR 598
PDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I ++G +
Sbjct: 369 PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRID 428
Query: 599 I 599
+
Sbjct: 429 L 429
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I
Sbjct: 361 FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII 420
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 421 RDNGDRIDL 429
>gi|195133818|ref|XP_002011336.1| GI16472 [Drosophila mojavensis]
gi|193907311|gb|EDW06178.1| GI16472 [Drosophila mojavensis]
Length = 1889
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 129/460 (28%), Positives = 195/460 (42%), Gaps = 106/460 (23%)
Query: 157 GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFL 216
GGL D G I +R C TC N T+C GH GHI+L PV + F +L+ CF
Sbjct: 51 GGLMDPRQGVI-DRTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFY 109
Query: 217 CHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSI 276
C K+ + + I +I + G + +L + D
Sbjct: 110 CSKMLVSPHNPK--IKEIVMKSKGQPRK-------------------RLAYVYD------ 142
Query: 277 LAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKID 336
L G IC+ GGE++ Q + + K C YQ I
Sbjct: 143 LCKGKTICE-----GGEDMDMTKDNQQVDPNKKPGHGGCG------HYQP-------SIR 184
Query: 337 KDNLDQSLD-KSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTK 395
+ LD + + K +N+ S +E+ ++++E + K T+E F+ + P
Sbjct: 185 RTGLDLTAEWKHVNEDS------QEKKIIVSAERVWEILKHITDEECFILGMDP------ 232
Query: 396 ELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKE 455
+ D M + L VPP +RP +V+M K
Sbjct: 233 KYARPDWMIVTVLPVPPLAVRP----------------------------AVVMFGAAKN 264
Query: 456 QSDLLSEALKGIRGDTLNNKLQN------SWHELQYNVDLLMD--AKLNINKTTG---AH 504
Q DL + I+ NN+L+ + H +Q N+ +L A L N G A
Sbjct: 265 QDDLTHKLADIIKA---NNELRKNEASGAAAHVIQENIKMLQFHVATLVDNDMPGMPRAM 321
Query: 505 QIDG-----LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLT 559
Q G +K L GK G IR N+MGKRV+F+ R+VITPDP L ID +GVP A+ LT
Sbjct: 322 QKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLT 381
Query: 560 YPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
+P VTP+N+ ++++V G + YPGA I ++G + +
Sbjct: 382 FPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDL 421
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ LT+P VTP+N+ ++++V G + YPGA I
Sbjct: 353 FSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIV 412
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 413 RDNGERIDL 421
>gi|449680520|ref|XP_004209607.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Hydra
magnipapillata]
Length = 576
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 128/448 (28%), Positives = 200/448 (44%), Gaps = 85/448 (18%)
Query: 158 GLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLC 217
GL D G I +R C TC N T+C GH GHIEL PV + F +++ CF C
Sbjct: 55 GLMDPRQGTI-DRMTRCQTCAGNMTECPGHFGHIELSKPVFHIGFLTMTIKIMRCFCFYC 113
Query: 218 HKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSIL 277
K+ L+ N KLL+ T+++ P + Q HV L
Sbjct: 114 SKL-------LVDKNHPKLLEILSKTKSQ---------------PKKRFQ----HVYD-L 146
Query: 278 AHGTKICDINDYKGGEELRSAFVAQVLS---RHVKRKCIFCATPINAISYQQRKIIKSFK 334
G IC+ GG+ + F A + + + K+ C YQ +
Sbjct: 147 CKGKSICE-----GGDIMDQQFDANLANNEEQAEKKGHGGCG------RYQP-------Q 188
Query: 335 IDKDNLDQSLD-KSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDT 393
I + LD + + K++N+ S + ++ + A V FK++ E C I +D
Sbjct: 189 IRRQALDLTAEWKNVNEDSQE-----KKISLTAERVHEIFKRITDEE-----CDILGMDA 238
Query: 394 TKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKN 453
+ D + + L VPP ++RP + M +++ L L +I A
Sbjct: 239 --KFCRPDWLIVTVLPVPPLSVRPAVV--MNGSARNQDDLTHK-------LADIIKANNQ 287
Query: 454 KEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKL----NINKTTGAHQIDGL 509
+++++ A I D + LQ++V L D +L + +G + +
Sbjct: 288 LKRNEMNGAAAHVIAQDLM---------MLQFHVATLTDNELPGLPRAQQKSG-RPLKSI 337
Query: 510 KQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNV 569
KQ L K G +R N+MGKRV+F+ R+VITPDP L+ID +G P A LTYP VTP+N+
Sbjct: 338 KQRLKSKEGRLRGNLMGKRVDFSARAVITPDPNLDIDQVGTPKTIAMNLTYPEIVTPFNI 397
Query: 570 TLLRKMVINGPNVYPGANMIQNEDGSVV 597
L+++V GP YPGA I ++G +
Sbjct: 398 DRLQELVRRGPTHYPGAKYIIRDNGERI 425
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 43/67 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +G P A LTYP VTP+N+ L+++V GP YPGA I
Sbjct: 359 FSARAVITPDPNLDIDQVGTPKTIAMNLTYPEIVTPFNIDRLQELVRRGPTHYPGAKYII 418
Query: 74 NEDGSVV 80
++G +
Sbjct: 419 RDNGERI 425
>gi|395533542|ref|XP_003768816.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Sarcophilus
harrisii]
Length = 1921
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 134/481 (27%), Positives = 214/481 (44%), Gaps = 95/481 (19%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E+K++SV + + P T G GGL D G I ER C TC N T+C GH GH
Sbjct: 30 ELKRMSVTEGGIKYPETTEG-GRPKLGGLMDPRQGVI-ERTGRCQTCAGNMTECPGHFGH 87
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
IEL PV + F +L+ CF C K+ L+ N K+ KD+
Sbjct: 88 IELAKPVFHVGFLVKTMKVLRCVCFFCSKL-------LVDSNNPKI---------KDILG 131
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQV------L 304
+ RL +HV L G IC+ GGEE+ + F + L
Sbjct: 132 KSKGQPKKRL----------THVYD-LCKGKNICE-----GGEEMDNKFGVEQPEGDEDL 175
Query: 305 SRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGY 363
++ ++ C YQ R I + L+ + K +N+ S +E+
Sbjct: 176 TK--EKGHGGCG------RYQPR-------IRRTGLELYAEWKHVNEDS------QEKKI 214
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQM 423
+++ E + K ++E F VL + M + L VPP ++RP + Q
Sbjct: 215 LLSPERVHEIFKRISDEECF------VLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQ- 267
Query: 424 PPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHEL 483
+RN+ + + + + ++ EQ+ + + + KL L
Sbjct: 268 ---GSARNQ--DDLTHKLADIVKINNQLRRNEQNGAAAHVI------AEDVKL------L 310
Query: 484 QYNVDLLMDAKL-----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
Q++V ++D +L + K+ + LKQ L GK G +R N+MGKRV+F+ R+VIT
Sbjct: 311 QFHVATMVDNELPGLPRAMQKS--GRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVR 598
PDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I ++G +
Sbjct: 369 PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRID 428
Query: 599 I 599
+
Sbjct: 429 L 429
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I
Sbjct: 361 FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII 420
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 421 RDNGDRIDL 429
>gi|126309152|ref|XP_001364837.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Monodelphis domestica]
Length = 1970
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 134/481 (27%), Positives = 214/481 (44%), Gaps = 95/481 (19%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E+K++SV + + P T G GGL D G I ER C TC N T+C GH GH
Sbjct: 30 ELKRMSVTEGGIKYPETTEG-GRPKLGGLMDPRQGVI-ERTGRCQTCAGNMTECPGHFGH 87
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
IEL PV + F +L+ CF C K+ L+ N K+ KD+
Sbjct: 88 IELAKPVFHVGFLVKTMKVLRCVCFFCSKL-------LVDSNNPKI---------KDILG 131
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQV------L 304
+ RL +HV L G IC+ GGEE+ + F + L
Sbjct: 132 KSKGQPKKRL----------THVYD-LCKGKNICE-----GGEEMDNKFGVEQPEGDEDL 175
Query: 305 SRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGY 363
++ ++ C YQ R I + L+ + K +N+ S +E+
Sbjct: 176 TK--EKGHGGCG------RYQPR-------IRRTGLELYAEWKHVNEDS------QEKKI 214
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQM 423
+++ E + K ++E F VL + M + L VPP ++RP + Q
Sbjct: 215 LLSPERVHEIFKRISDEECF------VLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQ- 267
Query: 424 PPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHEL 483
+RN+ + + + + ++ EQ+ + + + KL L
Sbjct: 268 ---GSARNQ--DDLTHKLADIVKINNQLRRNEQNGAAAHVI------AEDVKL------L 310
Query: 484 QYNVDLLMDAKL-----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
Q++V ++D +L + K+ + LKQ L GK G +R N+MGKRV+F+ R+VIT
Sbjct: 311 QFHVATMVDNELPGLPRAMQKS--GRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVR 598
PDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I ++G +
Sbjct: 369 PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRID 428
Query: 599 I 599
+
Sbjct: 429 L 429
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I
Sbjct: 361 FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII 420
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 421 RDNGDRIDL 429
>gi|355568192|gb|EHH24473.1| DNA-directed RNA polymerase II subunit RPB1 [Macaca mulatta]
gi|355753712|gb|EHH57677.1| DNA-directed RNA polymerase II subunit RPB1 [Macaca fascicularis]
Length = 1629
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 134/479 (27%), Positives = 213/479 (44%), Gaps = 95/479 (19%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E+K++SV + + P T G GGL D G I ER C TC N T+C GH GH
Sbjct: 30 ELKRMSVTEGGIKYPETTEG-GRPKLGGLMDPRQGVI-ERTGRCQTCAGNMTECPGHFGH 87
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
IEL PV + F +L+ CF C K+ L+ N K+ KD+
Sbjct: 88 IELAKPVFHVGFLVKTMKVLRCVCFFCSKL-------LVDSNNPKI---------KDILS 131
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQV------L 304
+ RL +HV L G IC+ GGEE+ + F + L
Sbjct: 132 KSKGQPKKRL----------THVYD-LCKGKNICE-----GGEEMDNKFGVEQPEGDEDL 175
Query: 305 SRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGY 363
++ ++ C YQ R I + L+ + K +N+ S +E+
Sbjct: 176 TK--EKGHGGCG------RYQPR-------IRRSGLELYAEWKHVNEDS------QEKKI 214
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQM 423
+++ E + K ++E F VL + M + L VPP ++RP + Q
Sbjct: 215 LLSPERVHEIFKRISDEECF------VLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQ- 267
Query: 424 PPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHEL 483
+RN+ + + + + ++ EQ+ + + + KL L
Sbjct: 268 ---GSARNQ--DDLTHKLADIVKINNQLRRNEQNGAAAHVI------AEDVKL------L 310
Query: 484 QYNVDLLMDAKL-----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
Q++V ++D +L + K+ + LKQ L GK G +R N+MGKRV+F+ R+VIT
Sbjct: 311 QFHVATMVDNELPGLPRAMQKS--GRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
PDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I ++G +
Sbjct: 369 PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRI 427
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I
Sbjct: 361 FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII 420
Query: 74 NEDGSVV 80
++G +
Sbjct: 421 RDNGDRI 427
>gi|308229948|gb|ADO24381.1| RNA polymerase II large subunit, partial [Drosophila cardini]
Length = 1870
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 128/457 (28%), Positives = 193/457 (42%), Gaps = 100/457 (21%)
Query: 157 GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFL 216
GGL D G I +R C TC N T+C GH GHI+L PV + F +L+ CF
Sbjct: 44 GGLMDPRQGVI-DRTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFY 102
Query: 217 CHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSI 276
C K+ + + I +I + G + +L + D
Sbjct: 103 CSKMLVSPRNPK--IKEIVMKSKGQPRK-------------------RLAYVYD------ 135
Query: 277 LAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKID 336
L G IC+ GGE++ Q + + K C YQ I
Sbjct: 136 LCKGKTICE-----GGEDMDLTKDNQQVDPNKKPGHGGCG------HYQP-------SIR 177
Query: 337 KDNLDQSLD-KSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTK 395
+ LD + + K +N+ S +E+ ++++E + K T+E F+ + P
Sbjct: 178 RTGLDLTAEWKHVNEDS------QEKKIIVSAERVWEILKHITDEECFILGMDP------ 225
Query: 396 ELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKE 455
+ D M + L VPP +RP +V+M K
Sbjct: 226 KYARPDWMIVTVLPVPPLAVRP----------------------------AVVMFGAAKN 257
Query: 456 QSDL---LSEALKGIRGDTLNNKLQNSWHELQYNVDLLMD--AKLNINKTTG---AHQID 507
Q DL L++ +K N + H +Q N+ +L A L N G A Q
Sbjct: 258 QDDLTHKLADIIKANNELRKNEASGAAAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKS 317
Query: 508 G-----LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPV 562
G +K L GK G IR N+MGKRV+F+ R+VITPDP L ID +GVP A+ LT+P
Sbjct: 318 GKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPE 377
Query: 563 PVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
VTP+N+ ++++V G + YPGA I ++G + +
Sbjct: 378 LVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDL 414
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ LT+P VTP+N+ ++++V G + YPGA I
Sbjct: 346 FSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIV 405
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 406 RDNGERIDL 414
>gi|345309516|ref|XP_003428845.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1, partial
[Ornithorhynchus anatinus]
Length = 988
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 125/453 (27%), Positives = 200/453 (44%), Gaps = 92/453 (20%)
Query: 157 GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFL 216
GGL D G I ER C TC N T+C GH GHIEL PV + F +L+ CF
Sbjct: 22 GGLMDPRQGVI-ERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFF 80
Query: 217 CHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSI 276
C K+ + A + + KD+ + RL +HV
Sbjct: 81 CSKLLVDANN----------------PKIKDILGKSKGQPKKRL----------THVYD- 113
Query: 277 LAHGTKICDINDYKGGEELRSAFVAQV------LSRHVKRKCIFCATPINAISYQQRKII 330
L G IC+ GGEE+ + F + L++ ++ C YQ R
Sbjct: 114 LCKGKNICE-----GGEEMDNKFGVEQPEGDEDLTK--EKGHGGCG------RYQPR--- 157
Query: 331 KSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIP 389
I + L+ + K +N+ S +E+ +++ E + K ++E F
Sbjct: 158 ----IRRTGLELYAEWKHVNEDS------QEKKILLSPERVHEIFKRISDEECF------ 201
Query: 390 VLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIM 449
VL + M + L VPP ++RP + Q +RN+ + + + +
Sbjct: 202 VLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGS----ARNQ--DDLTHKLADIVKINN 255
Query: 450 AMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKL-----NINKTTGAH 504
++ EQ+ + + + KL LQ++V ++D +L + K+
Sbjct: 256 QLRRNEQNGAAAHVI------AEDVKL------LQFHVATMVDNELPGLPRAMQKS--GR 301
Query: 505 QIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPV 564
+ LKQ L GK G +R N+MGKRV+F+ R+VITPDP L+ID +GVP A +T+ V
Sbjct: 302 PLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIV 361
Query: 565 TPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
TP+N+ L+++V G + YPGA I ++G +
Sbjct: 362 TPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRI 394
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I
Sbjct: 328 FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII 387
Query: 74 NEDGSVV 80
++G +
Sbjct: 388 RDNGDRI 394
>gi|297271809|ref|XP_001118060.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Macaca
mulatta]
Length = 1097
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 131/479 (27%), Positives = 212/479 (44%), Gaps = 95/479 (19%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E+K++SV + + P T G GGL D G I ER C TC N T+C GH GH
Sbjct: 30 ELKRMSVTEGGIKYPETTEG-GRPKLGGLMDPRQGVI-ERTGRCQTCAGNMTECPGHFGH 87
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
IEL PV + F +L+ CF C K+ + + + + KD+
Sbjct: 88 IELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNN----------------PKIKDILS 131
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQV------L 304
+ RL +HV L G IC+ GGEE+ + F + L
Sbjct: 132 KSKGQPKKRL----------THVYD-LCKGKNICE-----GGEEMDNKFGVEQPEGDEDL 175
Query: 305 SRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGY 363
++ ++ C YQ R I + L+ + K +N+ S +E+
Sbjct: 176 TK--EKGHGGCG------RYQPR-------IRRSGLELYAEWKHVNEDS------QEKKI 214
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQM 423
+++ E + K ++E F VL + M + L VPP ++RP + Q
Sbjct: 215 LLSPERVHEIFKRISDEECF------VLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQ- 267
Query: 424 PPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHEL 483
+RN+ + + + + ++ EQ+ + + + KL L
Sbjct: 268 ---GSARNQ--DDLTHKLADIVKINNQLRRNEQNGAAAHVI------AEDVKL------L 310
Query: 484 QYNVDLLMDAKL-----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
Q++V ++D +L + K+ + LKQ L GK G +R N+MGKRV+F+ R+VIT
Sbjct: 311 QFHVATMVDNELPGLPRAMQKS--GRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
PDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I ++G +
Sbjct: 369 PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRI 427
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I
Sbjct: 361 FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII 420
Query: 74 NEDGSVV 80
++G +
Sbjct: 421 RDNGDRI 427
>gi|312375441|gb|EFR22815.1| hypothetical protein AND_14157 [Anopheles darlingi]
Length = 1880
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 129/453 (28%), Positives = 185/453 (40%), Gaps = 98/453 (21%)
Query: 158 GLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLC 217
GL D G I ER C TC N T+C GH GHI+L PV + F +L+ CF C
Sbjct: 50 GLMDPRQGVI-ERTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYC 108
Query: 218 HKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSIL 277
K+ + T+ I +I + G + +L + D L
Sbjct: 109 SKMLVSPTNPK--IKEIVMKSKGQPRK-------------------RLAYVYD------L 141
Query: 278 AHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDK 337
G KIC+ GGE++ V K+ C YQ I +
Sbjct: 142 CKGKKICE-----GGEDMDLTKDGGVADPSKKQGHGGCG------HYQP-------SIRR 183
Query: 338 DNLDQSLDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKEL 397
LD + NQ E+ +++E + K T+E + VL +
Sbjct: 184 TGLDLMAEWKEVNDENQ-----EKKMQVSAERVYEILKHITDEECY------VLGMDPKF 232
Query: 398 IATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQS 457
D M I L VPP +RP +V+M K Q
Sbjct: 233 ARPDWMIITVLPVPPLAVRP----------------------------AVVMFGATKNQD 264
Query: 458 DL---LSEALKGIRGDTLNNKLQNSWHELQYNVDLLMD--AKLNINKTTG---AHQIDG- 508
DL LS+ +K N + + H + N+ +L A L N G A Q G
Sbjct: 265 DLTHKLSDIIKANNELKKNEQTGAAAHVIAENIKMLQFHVATLVDNDMPGMPKAMQKSGK 324
Query: 509 ----LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPV 564
+K L GK G IR N+MGKRV+F+ R+VITPDP L ID +GVP A+ +T+P V
Sbjct: 325 PLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSVAQNMTFPELV 384
Query: 565 TPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
TP+N+ ++++V G + YPGA I ++G +
Sbjct: 385 TPFNIDRMQELVRRGNSQYPGAKYIVRDNGERI 417
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 44/67 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ +T+P VTP+N+ ++++V G + YPGA I
Sbjct: 351 FSARTVITPDPNLRIDQVGVPRSVAQNMTFPELVTPFNIDRMQELVRRGNSQYPGAKYIV 410
Query: 74 NEDGSVV 80
++G +
Sbjct: 411 RDNGERI 417
>gi|378732247|gb|EHY58706.1| DNA-directed RNA polymerase III subunit C1 [Exophiala dermatitidis
NIH/UT8656]
Length = 1581
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 132/497 (26%), Positives = 215/497 (43%), Gaps = 100/497 (20%)
Query: 120 VPEILKLKYY---TDQEVKQLSVVKVFSPITFN-SLGHTIPG-GLYDLAMGPISERGDPC 174
VP+++K ++ +DQ++ S V++ F+ G T G D MG +S + D C
Sbjct: 21 VPKVIKELHFGVLSDQDIINQSQVELADRRMFDLDKGRTYAEYGPLDRRMG-VSGKRDIC 79
Query: 175 TTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQI 234
TCG C GH GH++L +PV + +F+ V +L+ C C I + + + N +
Sbjct: 80 QTCGEQLQTCNGHFGHVKLVLPVFHVGYFKKVIQILQSICKDCSAILLSEADRRKYHNAL 139
Query: 235 KLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKIC----DINDYK 290
+ + N L A +V+ V + TK+C IN
Sbjct: 140 RRV------------------ANDSLRQAAIVRKVADQCRK-----TKVCFECGAINGL- 175
Query: 291 GGEELRSAFVAQVLSRHVKRKCIFCAT------PINAISYQQRKIIKSFKIDKDNLDQSL 344
+R A + + H K K +T P I + KSF+ K++ +Q L
Sbjct: 176 ----VRKAGTSALKISHDKFKAFNSSTAAKKQPPPEKIEFD-----KSFETAKES-NQEL 225
Query: 345 DKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIA----- 399
+K L K+ + + N LK + + +EL+
Sbjct: 226 EKHLKKAMDDL-----------------------NPLRVLKLFRRIRRSDRELLGLRSAK 262
Query: 400 -TDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSD 458
D +++ + PP +RP ++ E I G I+A N
Sbjct: 263 PEDFLWL-YIPAPPVCIRPSVGQEGASTE-------DDITAKLGD----IVAANNA---- 306
Query: 459 LLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKL-NINKTTGAHQIDGLKQMLDGKT 517
L EA++ +G + + +++ W L N+ + +++ + + K QI G Q L GK
Sbjct: 307 -LREAIE--KGAPVQSVVEH-WDYLTLNLAMYINSDVPGLAKGEFGKQIRGFVQRLKGKQ 362
Query: 518 GMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVI 577
G R N+ GKRV+F+GR+VI+PDP L ID + VP+ AK +TYP V N+ LR+ V
Sbjct: 363 GRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPILVAKNMTYPEVVNEINIEKLRQRVR 422
Query: 578 NGPNVYPGANMIQNEDG 594
NG V+PGAN + DG
Sbjct: 423 NGTKVWPGANYVYKPDG 439
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 40/64 (62%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP+ AK +TYP V N+ LR+ V NG V+PGAN +
Sbjct: 376 FSGRTVISPDPNLRIDEVAVPILVAKNMTYPEVVNEINIEKLRQRVRNGTKVWPGANYVY 435
Query: 74 NEDG 77
DG
Sbjct: 436 KPDG 439
>gi|324120586|dbj|BAJ78684.1| RNA polymerase II largest subunit [Papilio polytes]
Length = 1518
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 132/481 (27%), Positives = 201/481 (41%), Gaps = 105/481 (21%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E++++SV + + P T G GGL D G I +R C TC N T+C GH GH
Sbjct: 21 EIRRMSVTEGGIRFPETMEG-GRPKLGGLMDPRQGVI-DRNARCQTCAGNMTECPGHFGH 78
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
I+L PV + F +L+ CF C K+ + T+ I ++ + G +
Sbjct: 79 IDLAKPVFHIGFITKTIKILRCVCFYCSKLLVSPTNPK--IKEVVMKSKGQPRK------ 130
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKR 310
+L + D L G IC+ GGE++ + R
Sbjct: 131 -------------RLTYVYD------LCKGKNICE-----GGEDMDIGKEGEEGKR---- 162
Query: 311 KCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLN-KSSNQIIRKREQGYVMASEV 369
+ + Q I + Q LD + K +N+ +E+ ++ +E
Sbjct: 163 -----GSGHGGCGHYQPSIRR----------QGLDLTAEWKHANE--DTQEKKIIITAER 205
Query: 370 EADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHS 429
+ K T+E F+ + P + D M + L VPP ++RP
Sbjct: 206 VWEILKHITDEESFILGMDP------KFARPDWMIVTVLPVPPLSVRP------------ 247
Query: 430 RNKLYQSILYSCGSLKSVIMAMKNKEQSDL---LSEALKGIRGDTLNNKLQNSWHELQYN 486
+V+M K Q DL L++ +K N +L + H L N
Sbjct: 248 ----------------AVVMFGAAKNQDDLTHKLADIIKANNELMRNEQLGAAAHVLAEN 291
Query: 487 VDLLMD--AKLNINKTTG---AHQIDG-----LKQMLDGKTGMIRQNMMGKRVNFAGRSV 536
+ LL A N G A Q G +K L GK G IR N+MGKRV+F+ R+V
Sbjct: 292 IRLLQFHVATFVDNDMPGMPKAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTV 351
Query: 537 ITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSV 596
ITPDP L ID +GVP A+ LT+P VTP+N+ ++++V G YPGA I ++G
Sbjct: 352 ITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNAQYPGAKYIVRDNGER 411
Query: 597 V 597
+
Sbjct: 412 I 412
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 43/67 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ LT+P VTP+N+ ++++V G YPGA I
Sbjct: 346 FSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNAQYPGAKYIV 405
Query: 74 NEDGSVV 80
++G +
Sbjct: 406 RDNGERI 412
>gi|121706250|ref|XP_001271388.1| DNA-directed RNA polymerase III largest subunit, putative
[Aspergillus clavatus NRRL 1]
gi|119399534|gb|EAW09962.1| DNA-directed RNA polymerase III largest subunit, putative
[Aspergillus clavatus NRRL 1]
Length = 1449
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 128/495 (25%), Positives = 208/495 (42%), Gaps = 87/495 (17%)
Query: 110 KEKIITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGH---TIPGGLYDLAMGP 166
K ++I R V + LK ++ ++ VV+V FN L H +P G D MG
Sbjct: 13 KAQVIDRVPKVIKELKFGVLSNDDIVSQGVVEVSDRKFFN-LEHDRAVVPHGPLDQRMG- 70
Query: 167 ISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATS 226
IS + C TCG + C GH GH+ L +P + +F+ V +L+ C C +I +P
Sbjct: 71 ISSKTATCQTCGGSLQVCNGHFGHVRLVLPAFHVGYFKRVISILQEICKECSRILLPEAE 130
Query: 227 QLLFINQIKL--LDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKIC 284
+ F+ +++ LD NLR Q+ + ++ + T+ C
Sbjct: 131 RRAFLREMRRPGLD------------------NLRR--LQIAKRINERCRK-----TRTC 165
Query: 285 DINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSL 344
+ G ++ A ++ H K + +T + + + + D+S
Sbjct: 166 ETCGTVNGVVKKAGNSALKIT-HDKFRAFNASTSVKKVPPPSKIV----------FDRSF 214
Query: 345 DKSLNKSSNQIIRKREQGYVMASEVEADFKKLWT--NEHLFLKCLIPVLDTTKELI---- 398
D++ N ++ EVE +KK N L + DT EL+
Sbjct: 215 DEARNSNA---------------EVEKHYKKAQDDMNALRVLNLFKKISDTDCELLGLNP 259
Query: 399 --ATDIMFIRSLV-VPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKE 455
A MF+ + PP +RP + E I+ S +LK+ +
Sbjct: 260 KEARPEMFLWQFIPAPPVCIRPSVGQDAASTEDDLTAKLGDIVQSNINLKNSL------- 312
Query: 456 QSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKL-NINKTTGAHQIDGLKQMLD 514
LKG T+ W +Q + + +++ + +NK I G Q L
Sbjct: 313 --------LKGAPVQTI----MECWDYMQLQIAVYINSDVPGLNKADLGKPIRGFVQRLK 360
Query: 515 GKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRK 574
GK G R N+ GKRV+F+GR+VI+PDP L +D + VP AK +TYP V+ +N L++
Sbjct: 361 GKQGRFRGNLSGKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVSRYNKEKLQQ 420
Query: 575 MVINGPNVYPGANMI 589
V NG +PGAN I
Sbjct: 421 RVRNGTKKWPGANYI 435
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 37/59 (62%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 72
F R+VI+PDP L +D + VP AK +TYP V+ +N L++ V NG +PGAN I
Sbjct: 377 FSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVSRYNKEKLQQRVRNGTKKWPGANYI 435
>gi|70998935|ref|XP_754189.1| DNA-directed RNA polymerase III largest subunit [Aspergillus
fumigatus Af293]
gi|66851826|gb|EAL92151.1| DNA-directed RNA polymerase III largest subunit, putative
[Aspergillus fumigatus Af293]
gi|159127207|gb|EDP52322.1| DNA-directed RNA polymerase III largest subunit, putative
[Aspergillus fumigatus A1163]
Length = 1453
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 131/495 (26%), Positives = 210/495 (42%), Gaps = 87/495 (17%)
Query: 110 KEKIITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGH---TIPGGLYDLAMGP 166
K ++I R + + LK ++ ++ +VV+V S F L H +P G D MG
Sbjct: 13 KAQVIDRVPKIIKELKFGVLSNDDIVSQAVVEV-SDRKFFDLEHDRAVVPHGPLDGRMG- 70
Query: 167 ISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATS 226
IS + C TCG + C GH GH+ L +P + +F+ V +L+ C C +I +P
Sbjct: 71 ISSKTATCQTCGGSLQVCNGHFGHVRLVLPAFHVGYFKRVISILQEICKECSRILLPEAE 130
Query: 227 QLLFINQIKL--LDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKIC 284
+ F+ +++ LD NLR Q+ + V+ + T+ C
Sbjct: 131 RRAFLREMRRPGLD------------------NLRR--LQIAKRVNERCRK-----TRTC 165
Query: 285 DINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSL 344
+ G ++ A ++ H K + +T + + + + D+S
Sbjct: 166 EACGAINGVVKKAGNSALKIT-HDKFRAFNVSTSVKKVPPPSKIV----------FDRSF 214
Query: 345 DKSLNKSSNQIIRKREQGYVMASEVEADFKKLWT--NEHLFLKCLIPVLDTTKELI---- 398
D++ ++SN EVE +KK N L V DT EL+
Sbjct: 215 DEA--RTSN-------------PEVEKHYKKAQDDMNALRVLNLFKKVSDTDCELLGLNP 259
Query: 399 --ATDIMFIRSLV-VPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKE 455
A MF+ + PP +RP + E I+ S +LK+ +M
Sbjct: 260 KEARPEMFLWQFIPAPPVCIRPSVGQDAASTEDDLTAKLGDIVQSNINLKNALM------ 313
Query: 456 QSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKL-NINKTTGAHQIDGLKQMLD 514
KG T+ W +Q + + +++ + +NK I G Q L
Sbjct: 314 ---------KGAPVQTI----VECWDYMQLQIAVYINSDVPGLNKADLGKPIRGFVQRLK 360
Query: 515 GKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRK 574
GK G R N+ GKRV+F+GR+VI+PDP L +D + VP AK +TYP VT +N L++
Sbjct: 361 GKQGRFRGNLSGKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQ 420
Query: 575 MVINGPNVYPGANMI 589
V NG +PGAN I
Sbjct: 421 RVRNGTKKWPGANYI 435
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 37/59 (62%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 72
F R+VI+PDP L +D + VP AK +TYP VT +N L++ V NG +PGAN I
Sbjct: 377 FSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQRVRNGTKKWPGANYI 435
>gi|308229946|gb|ADO24380.1| RNA polymerase II large subunit, partial [Drosophila brachynephros]
Length = 1847
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 128/457 (28%), Positives = 193/457 (42%), Gaps = 100/457 (21%)
Query: 157 GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFL 216
GGL D G I +R C TC N T+C GH GHI+L PV + F +L+ CF
Sbjct: 32 GGLMDPRQGVI-DRTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFY 90
Query: 217 CHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSI 276
C K+ + + I +I + G + +L + D
Sbjct: 91 CSKMLVSPHNPK--IKEIVMKSKGQPRK-------------------RLAYVYD------ 123
Query: 277 LAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKID 336
L G IC+ GGE++ Q + + K C YQ I
Sbjct: 124 LCKGKTICE-----GGEDMDLTKDNQQVDPNKKPGHGGCG------HYQP-------SIR 165
Query: 337 KDNLDQSLD-KSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTK 395
+ LD + + K +N+ S +E+ ++++E + K T+E F+ + P
Sbjct: 166 RTGLDLTAEWKHVNEDS------QEKKIIVSAERVWEILKHITDEECFILGMDP------ 213
Query: 396 ELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKE 455
+ D M + L VPP +RP +V+M K
Sbjct: 214 KYARPDWMIVTVLPVPPLAVRP----------------------------AVVMFGAAKN 245
Query: 456 QSDL---LSEALKGIRGDTLNNKLQNSWHELQYNVDLLMD--AKLNINKTTG---AHQID 507
Q DL L++ +K N + H +Q N+ +L A L N G A Q
Sbjct: 246 QDDLTHKLADIIKANNELRKNEASGAAAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKS 305
Query: 508 G-----LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPV 562
G +K L GK G IR N+MGKRV+F+ R+VITPDP L ID +GVP A+ LT+P
Sbjct: 306 GKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPE 365
Query: 563 PVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
VTP+N+ ++++V G + YPGA I ++G + +
Sbjct: 366 LVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDL 402
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ LT+P VTP+N+ ++++V G + YPGA I
Sbjct: 334 FSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIV 393
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 394 RDNGERIDL 402
>gi|145242160|ref|XP_001393726.1| DNA-directed RNA polymerase III subunit RPO31 [Aspergillus niger
CBS 513.88]
gi|134078271|emb|CAK96852.1| unnamed protein product [Aspergillus niger]
Length = 1450
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 128/495 (25%), Positives = 208/495 (42%), Gaps = 87/495 (17%)
Query: 110 KEKIITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGH---TIPGGLYDLAMGP 166
K ++I R V + LK ++ ++ VV+V S F L H + G D MG
Sbjct: 13 KAQVIDRVPKVIKELKFGVLSNDDIVSQGVVEV-SDRKFFDLDHDRAVVANGPLDARMG- 70
Query: 167 ISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATS 226
IS + C TCG C GH GH+ L +P + +F+ V +L+ C C +I +P
Sbjct: 71 ISNKTSSCQTCGGTLQICNGHFGHVRLVLPAFHVGYFKRVITILQEVCKECSRILLPEAD 130
Query: 227 QLLFINQIKL--LDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKIC 284
+ ++ +++ LD NLR Q+ + ++ + T+ C
Sbjct: 131 RRAYLREMRRPGLD------------------NLRR--GQIAKRINERCRK-----TRNC 165
Query: 285 DINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSL 344
+ G ++ A + + H K + +T + + + + D+S
Sbjct: 166 EACGAVNGV-VKKAGTSALKITHDKFRAFNASTSVKKVPPPSKIV----------FDRSF 214
Query: 345 DKSLNKSSNQIIRKREQGYVMASEVEADFKKLWT--NEHLFLKCLIPVLDTTKELI---- 398
D++ ++SN +EVE +KK N L + DT EL+
Sbjct: 215 DEA--RTSN-------------AEVEKHYKKAQDDMNALRVLNLFKKISDTDCELLGLNP 259
Query: 399 --ATDIMFIRSLV-VPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKE 455
A MF+ + PP +RP + E I+ S +LK+ +
Sbjct: 260 KEARPEMFLWQFIPAPPVCIRPSVGQDAASTEDDLTAKLGDIVQSNINLKNAL------- 312
Query: 456 QSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKL-NINKTTGAHQIDGLKQMLD 514
LKG T+ W +Q + + +++ + +NK I G Q L
Sbjct: 313 --------LKGAPVQTI----MECWDYMQLQIAVYINSDVPGLNKADLGKPIRGFVQRLK 360
Query: 515 GKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRK 574
GK G R N+ GKRV+F+GR+VI+PDP L +D + VP AK +TYP VT +N L++
Sbjct: 361 GKQGRFRGNLSGKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQ 420
Query: 575 MVINGPNVYPGANMI 589
V NG +PGAN I
Sbjct: 421 RVRNGTKKWPGANYI 435
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 37/59 (62%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 72
F R+VI+PDP L +D + VP AK +TYP VT +N L++ V NG +PGAN I
Sbjct: 377 FSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQRVRNGTKKWPGANYI 435
>gi|4808164|emb|CAB42795.1| largest subunit of the RNA polymerase II complex [Drosophila
guanche]
gi|40217263|emb|CAD68001.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217265|emb|CAD70679.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217267|emb|CAD70680.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217269|emb|CAD70681.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217271|emb|CAD70682.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217273|emb|CAD70683.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217275|emb|CAD70684.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217277|emb|CAD70685.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217279|emb|CAD70686.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217281|emb|CAD70687.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217283|emb|CAD70688.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217285|emb|CAD70689.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217287|emb|CAD70690.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217289|emb|CAD70691.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217291|emb|CAD70692.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217293|emb|CAD70693.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217295|emb|CAD70694.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217297|emb|CAD70695.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217299|emb|CAD70696.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217301|emb|CAD70697.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217303|emb|CAD70698.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217305|emb|CAD70699.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217307|emb|CAD70700.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217309|emb|CAD70701.1| RNA polymerase II large subunit [Drosophila guanche]
Length = 1889
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 131/457 (28%), Positives = 191/457 (41%), Gaps = 100/457 (21%)
Query: 157 GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFL 216
GGL D G I +R C TC N T+C GH GHI+L PV + F +L+ CF
Sbjct: 51 GGLMDPRQGVI-DRTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFY 109
Query: 217 CHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSI 276
C K+ + + I +I + G + +L + D
Sbjct: 110 CSKMLV--SPHNPKIKEIVVKSKGQPRK-------------------RLAYVYD------ 142
Query: 277 LAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKID 336
L G IC+ GGE++ Q + K C YQ I
Sbjct: 143 LCKGKTICE-----GGEDMDLTKDNQQPDPNKKPGHGGCG------HYQP-------SIR 184
Query: 337 KDNLDQSLD-KSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTK 395
+ LD S + K N+ S +E+ V+++E + K T+E F+ + P
Sbjct: 185 RTGLDLSAEWKHPNEDS------QEKKIVVSAERVWEILKHITDEECFILGMDP------ 232
Query: 396 ELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKE 455
+ D M + L VPP +RP +V+M K
Sbjct: 233 KYARPDWMIVTVLPVPPLAVRP----------------------------AVVMFGAAKN 264
Query: 456 QSDL---LSEALKGIRGDTLNNKLQNSWHELQYNVDLLMD--AKLNINKTTG---AHQID 507
Q DL LS+ +K N + H +Q N+ +L A L N G A Q
Sbjct: 265 QDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKS 324
Query: 508 G-----LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPV 562
G +K L GK G IR N+MGKRV+F+ R+VITPDP L ID +GVP A+ LT+P
Sbjct: 325 GKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPE 384
Query: 563 PVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
VTP+N+ ++++V G + YPGA I ++G + +
Sbjct: 385 LVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDL 421
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ LT+P VTP+N+ ++++V G + YPGA I
Sbjct: 353 FSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIV 412
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 413 RDNGERIDL 421
>gi|324120534|dbj|BAJ78658.1| RNA polymerase II largest subunit [Karoophasma biedouwense]
Length = 1907
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 133/489 (27%), Positives = 206/489 (42%), Gaps = 112/489 (22%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E++++SV + + P T+ G GGL D G I +R C TC N T+C GH GH
Sbjct: 25 EIRRMSVTEGGIRFPETYEG-GRPKLGGLMDPRQGVI-DRNSRCQTCAGNQTECPGHFGH 82
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
I+L PV + F +L+ CF C K+ + T+ I ++ + G
Sbjct: 83 IDLAKPVFHVGFITKTIKILRCVCFYCSKMLVSPTNPK--IKEVVMKSKG---------- 130
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKR 310
P + + V L G IC+ GG+E+
Sbjct: 131 ----------QPRKRLTFVYD-----LCKGKNICE-----GGDEMD-------------- 156
Query: 311 KCIFCATPINAISYQQRKIIKSF------KIDKDNLDQSLD-KSLNKSSNQIIRKREQGY 363
I P + S Q RK I + LD + + K +N+ S +E+
Sbjct: 157 --IQKDNPDDPNSQQPRKAGHGGCGRYQPSIRRVGLDLTAEWKHVNEDS------QEKKI 208
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQM 423
+++E + K T+E F+ + P +L D M + L VPP +RP
Sbjct: 209 SLSAERVWEILKHITDEECFILGMDP------KLARPDWMIVTVLPVPPLAVRP------ 256
Query: 424 PPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDL---LSEALKGIRGDTLNNKLQNSW 480
+V+M + Q DL L++ +K N + +
Sbjct: 257 ----------------------AVVMYGSARNQDDLTHKLADIIKSNNELVRNEQAGAAA 294
Query: 481 HELQYNVDLLMD--AKLNINKTTG---AHQIDG-----LKQMLDGKTGMIRQNMMGKRVN 530
H + N+ +L A L N G A Q G +K L GK G IR N+MGKRV+
Sbjct: 295 HVILENIKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVD 354
Query: 531 FAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 590
F+ R+VITPDP L ID +GVP A+ +T+P VTP+N+ ++++V G + YPGA I
Sbjct: 355 FSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNIDKMQELVRRGNSQYPGAKYIV 414
Query: 591 NEDGSVVRI 599
++G + +
Sbjct: 415 RDNGERIDL 423
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 45/69 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ +T+P VTP+N+ ++++V G + YPGA I
Sbjct: 355 FSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNIDKMQELVRRGNSQYPGAKYIV 414
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 415 RDNGERIDL 423
>gi|308229950|gb|ADO24382.1| RNA polymerase II large subunit, partial [Drosophila falleni]
Length = 1847
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 128/457 (28%), Positives = 193/457 (42%), Gaps = 100/457 (21%)
Query: 157 GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFL 216
GGL D G I +R C TC N T+C GH GHI+L PV + F +L+ CF
Sbjct: 32 GGLMDPRQGVI-DRTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFY 90
Query: 217 CHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSI 276
C K+ + + I +I + G + +L + D
Sbjct: 91 CSKMLVSPHNPK--IKEIVMKSKGQPRK-------------------RLAYVYD------ 123
Query: 277 LAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKID 336
L G IC+ GGE++ Q + + K C YQ I
Sbjct: 124 LCKGKTICE-----GGEDMDLTKDNQQVDPNKKPGHGGCG------HYQP-------SIR 165
Query: 337 KDNLDQSLD-KSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTK 395
+ LD + + K +N+ S +E+ ++++E + K T+E F+ + P
Sbjct: 166 RTGLDLTAEWKHVNEDS------QEKKIIVSAERVWEILKHITDEECFILGMDP------ 213
Query: 396 ELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKE 455
+ D M + L VPP +RP +V+M K
Sbjct: 214 KYARPDWMIVTVLPVPPLAVRP----------------------------AVVMFGAAKN 245
Query: 456 QSDL---LSEALKGIRGDTLNNKLQNSWHELQYNVDLLMD--AKLNINKTTG---AHQID 507
Q DL L++ +K N + H +Q N+ +L A L N G A Q
Sbjct: 246 QDDLTHKLADIIKANNELRKNEASGAAAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKS 305
Query: 508 G-----LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPV 562
G +K L GK G IR N+MGKRV+F+ R+VITPDP L ID +GVP A+ LT+P
Sbjct: 306 GKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPE 365
Query: 563 PVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
VTP+N+ ++++V G + YPGA I ++G + +
Sbjct: 366 LVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDL 402
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ LT+P VTP+N+ ++++V G + YPGA I
Sbjct: 334 FSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIV 393
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 394 RDNGERIDL 402
>gi|308229952|gb|ADO24383.1| RNA polymerase II large subunit, partial [Drosophila guttifera]
Length = 1872
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 128/457 (28%), Positives = 193/457 (42%), Gaps = 100/457 (21%)
Query: 157 GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFL 216
GGL D G I +R C TC N T+C GH GHI+L PV + F +L+ CF
Sbjct: 44 GGLMDPRQGVI-DRTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFY 102
Query: 217 CHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSI 276
C K+ + + I +I + G + +L + D
Sbjct: 103 CSKMLVSPHNPK--IKEIVVKSKGQPRK-------------------RLAYVYD------ 135
Query: 277 LAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKID 336
L G IC+ GGE++ Q + + K C YQ I
Sbjct: 136 LCKGKTICE-----GGEDMDLTKDNQQVDPNKKPGHGGCG------HYQP-------SIR 177
Query: 337 KDNLDQSLD-KSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTK 395
+ LD + + K +N+ S +E+ ++++E + K T+E F+ + P
Sbjct: 178 RTGLDLTAEWKHVNEDS------QEKKIIVSAERVWEILKHITDEECFILGMDP------ 225
Query: 396 ELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKE 455
+ D M + L VPP +RP +V+M K
Sbjct: 226 KYARPDWMIVTVLPVPPLAVRP----------------------------AVVMFGAAKN 257
Query: 456 QSDL---LSEALKGIRGDTLNNKLQNSWHELQYNVDLLMD--AKLNINKTTG---AHQID 507
Q DL L++ +K N + H +Q N+ +L A L N G A Q
Sbjct: 258 QDDLTHKLADIIKANNELRKNEASGAAAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKS 317
Query: 508 G-----LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPV 562
G +K L GK G IR N+MGKRV+F+ R+VITPDP L ID +GVP A+ LT+P
Sbjct: 318 GKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPE 377
Query: 563 PVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
VTP+N+ ++++V G + YPGA I ++G + +
Sbjct: 378 LVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDL 414
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ LT+P VTP+N+ ++++V G + YPGA I
Sbjct: 346 FSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIV 405
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 406 RDNGERIDL 414
>gi|324120530|dbj|BAJ78656.1| RNA polymerase II largest subunit [Aposthonia japonica]
Length = 1697
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 134/481 (27%), Positives = 203/481 (42%), Gaps = 103/481 (21%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E++++SV + + P T G GGL D G I +R C TC N T+C GH GH
Sbjct: 5 EIRRMSVTEGGIRFPETMEG-GRPKLGGLMDPRQGVI-DRNSRCQTCAGNQTECPGHFGH 62
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
I+L PV + F +L+ CF C K+ + T I +I + G
Sbjct: 63 IDLAKPVFHIGFLTKTIKILRCVCFYCSKLLVSPTHPK--IKEIVMKSKG---------- 110
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKR 310
P + + V L G IC+ GG+E+ + + R
Sbjct: 111 ----------QPRKRLTFVYD-----LCKGKNICE-----GGDEM--DINKENIDDQQPR 148
Query: 311 KCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGYVMASEV 369
K A YQ I + LD + + K +N+ S +E+ +++E
Sbjct: 149 K----AGHGGCGRYQP-------NIRRAGLDLTAEWKHVNEDS------QEKKINLSAER 191
Query: 370 EADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHS 429
+ K T+E F+ + P + D M + L VPP ++RP
Sbjct: 192 VWEILKHITDEECFILGMDP------KFARPDWMIVTVLPVPPLSVRP------------ 233
Query: 430 RNKLYQSILYSCGSLKSVIMAMKNKEQSDL---LSEALKGIRGDTLNNKLQNSWHELQYN 486
+V+M + Q DL LS+ +K N + + H + N
Sbjct: 234 ----------------AVVMYGSARNQDDLTHKLSDIIKSNNELVRNEQAGAAAHVIAEN 277
Query: 487 VDLLMD--AKLNINKTTG---AHQIDG-----LKQMLDGKTGMIRQNMMGKRVNFAGRSV 536
+ +L A L N G A Q G +K L GK G IR N+MGKRV+F+ R+V
Sbjct: 278 IKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAIKSRLKGKEGRIRGNLMGKRVDFSARTV 337
Query: 537 ITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSV 596
ITPDP L ID +GVP A+ LT+P VTP+N+ ++++V G + YPGA I ++G
Sbjct: 338 ITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPGAKYIVRDNGER 397
Query: 597 V 597
+
Sbjct: 398 I 398
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 44/67 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ LT+P VTP+N+ ++++V G + YPGA I
Sbjct: 332 FSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPGAKYIV 391
Query: 74 NEDGSVV 80
++G +
Sbjct: 392 RDNGERI 398
>gi|125983594|ref|XP_001355562.1| RpII215 [Drosophila pseudoobscura pseudoobscura]
gi|54643878|gb|EAL32621.1| RpII215 [Drosophila pseudoobscura pseudoobscura]
Length = 1889
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 131/457 (28%), Positives = 191/457 (41%), Gaps = 100/457 (21%)
Query: 157 GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFL 216
GGL D G I +R C TC N T+C GH GHI+L PV + F +L+ CF
Sbjct: 51 GGLMDPRQGVI-DRTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFY 109
Query: 217 CHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSI 276
C K+ + + I +I + G + +L + D
Sbjct: 110 CSKMLV--SPHNPKIKEIVVKSKGQPRK-------------------RLAYVYD------ 142
Query: 277 LAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKID 336
L G IC+ GGE++ Q + K C YQ I
Sbjct: 143 LCKGKTICE-----GGEDMDLTKDNQQPDPNKKPGHGGCG------HYQP-------SIR 184
Query: 337 KDNLDQSLD-KSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTK 395
+ LD S + K N+ S +E+ V+++E + K T+E F+ + P
Sbjct: 185 RTGLDLSAEWKHPNEDS------QEKKIVVSAERVWEILKHITDEECFILGMDP------ 232
Query: 396 ELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKE 455
+ D M + L VPP +RP +V+M K
Sbjct: 233 KYARPDWMIVTVLPVPPLAVRP----------------------------AVVMFGAAKN 264
Query: 456 QSDL---LSEALKGIRGDTLNNKLQNSWHELQYNVDLLMD--AKLNINKTTG---AHQID 507
Q DL LS+ +K N + H +Q N+ +L A L N G A Q
Sbjct: 265 QDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKS 324
Query: 508 G-----LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPV 562
G +K L GK G IR N+MGKRV+F+ R+VITPDP L ID +GVP A+ LT+P
Sbjct: 325 GKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPE 384
Query: 563 PVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
VTP+N+ ++++V G + YPGA I ++G + +
Sbjct: 385 LVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDL 421
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ LT+P VTP+N+ ++++V G + YPGA I
Sbjct: 353 FSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIV 412
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 413 RDNGERIDL 421
>gi|350640058|gb|EHA28411.1| hypothetical protein ASPNIDRAFT_128642 [Aspergillus niger ATCC 1015]
Length = 2063
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 128/495 (25%), Positives = 208/495 (42%), Gaps = 87/495 (17%)
Query: 110 KEKIITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGH---TIPGGLYDLAMGP 166
K ++I R V + LK ++ ++ VV+V S F L H + G D MG
Sbjct: 626 KAQVIDRVPKVIKELKFGVLSNDDIVSQGVVEV-SDRKFFDLDHDRAVVANGPLDARMG- 683
Query: 167 ISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATS 226
IS + C TCG C GH GH+ L +P + +F+ V +L+ C C +I +P
Sbjct: 684 ISNKTSSCQTCGGTLQICNGHFGHVRLVLPAFHVGYFKRVITILQEVCKECSRILLPEAD 743
Query: 227 QLLFINQIKL--LDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKIC 284
+ ++ +++ LD NLR Q+ + ++ + T+ C
Sbjct: 744 RRAYLREMRRPGLD------------------NLRR--GQIAKRINERCRK-----TRNC 778
Query: 285 DINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSL 344
+ G ++ A + + H K + +T + + + + D+S
Sbjct: 779 EACGAVNGV-VKKAGTSALKITHDKFRAFNASTSVKKVPPPSKIV----------FDRSF 827
Query: 345 DKSLNKSSNQIIRKREQGYVMASEVEADFKKLWT--NEHLFLKCLIPVLDTTKELI---- 398
D++ ++SN +EVE +KK N L + DT EL+
Sbjct: 828 DEA--RTSN-------------AEVEKHYKKAQDDMNALRVLNLFKKISDTDCELLGLNP 872
Query: 399 --ATDIMFIRSLV-VPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKE 455
A MF+ + PP +RP + E I+ S +LK+ +
Sbjct: 873 KEARPEMFLWQFIPAPPVCIRPSVGQDAASTEDDLTAKLGDIVQSNINLKNAL------- 925
Query: 456 QSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKL-NINKTTGAHQIDGLKQMLD 514
LKG T+ W +Q + + +++ + +NK I G Q L
Sbjct: 926 --------LKGAPVQTI----MECWDYMQLQIAVYINSDVPGLNKADLGKPIRGFVQRLK 973
Query: 515 GKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRK 574
GK G R N+ GKRV+F+GR+VI+PDP L +D + VP AK +TYP VT +N L++
Sbjct: 974 GKQGRFRGNLSGKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQ 1033
Query: 575 MVINGPNVYPGANMI 589
V NG +PGAN I
Sbjct: 1034 RVRNGTKKWPGANYI 1048
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 37/59 (62%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 72
F R+VI+PDP L +D + VP AK +TYP VT +N L++ V NG +PGAN I
Sbjct: 990 FSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQRVRNGTKKWPGANYI 1048
>gi|308229942|gb|ADO24378.1| RNA polymerase II large subunit, partial [Drosophila acutilabella]
Length = 1845
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 128/457 (28%), Positives = 193/457 (42%), Gaps = 100/457 (21%)
Query: 157 GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFL 216
GGL D G I +R C TC N T+C GH GHI+L PV + F +L+ CF
Sbjct: 32 GGLMDPRQGVI-DRTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFY 90
Query: 217 CHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSI 276
C K+ + + I +I + G + +L + D
Sbjct: 91 CSKMLVSPHNPK--IKEIVMKSKGQPRK-------------------RLAYVYD------ 123
Query: 277 LAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKID 336
L G IC+ GGE++ Q + + K C YQ I
Sbjct: 124 LCKGKTICE-----GGEDMDLTKDNQQVDPNKKPGHGGCG------HYQP-------SIR 165
Query: 337 KDNLDQSLD-KSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTK 395
+ LD + + K +N+ S +E+ ++++E + K T+E F+ + P
Sbjct: 166 RTGLDLTAEWKHVNEDS------QEKKIIVSAERVWEILKHITDEECFILGMDP------ 213
Query: 396 ELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKE 455
+ D M + L VPP +RP +V+M K
Sbjct: 214 KYARPDWMIVTVLPVPPLAVRP----------------------------AVVMFGAAKN 245
Query: 456 QSDL---LSEALKGIRGDTLNNKLQNSWHELQYNVDLLMD--AKLNINKTTG---AHQID 507
Q DL L++ +K N + H +Q N+ +L A L N G A Q
Sbjct: 246 QDDLTHKLADIIKANNELRKNEASGAAAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKS 305
Query: 508 G-----LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPV 562
G +K L GK G IR N+MGKRV+F+ R+VITPDP L ID +GVP A+ LT+P
Sbjct: 306 GKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPE 365
Query: 563 PVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
VTP+N+ ++++V G + YPGA I ++G + +
Sbjct: 366 LVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDL 402
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ LT+P VTP+N+ ++++V G + YPGA I
Sbjct: 334 FSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIV 393
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 394 RDNGERIDL 402
>gi|255571576|ref|XP_002526734.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
communis]
gi|223533923|gb|EEF35648.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
communis]
Length = 1686
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 116/226 (51%), Gaps = 25/226 (11%)
Query: 364 VMASEVEADFKKLWTNEHLFLKCL--IPVLDTTKELIATDIMFIRSLVVPPNNLRPLSME 421
++ SEV+ + LW NE + + + K + F+ +++VPP RP +
Sbjct: 295 LLPSEVKEKLELLWKNEARICSFISDLQQQEFGKRKAGPAMFFLETILVPPIKFRPPTKG 354
Query: 422 QMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWH 481
+EH + L +L S SL A NKE S K+ W
Sbjct: 355 GDSVMEHPQTVLLSKVLQSNISLGD---AHINKEHS-----------------KIVRRWL 394
Query: 482 ELQYNVDLLMDAKLNINKTTGAHQ-IDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPD 540
+LQ +++ L D+K K G + G+ Q+L+ K G+ RQ MMGKRVN+A RSVI+PD
Sbjct: 395 DLQQSINTLFDSK--TAKGPGQREGAPGICQLLEKKEGLFRQKMMGKRVNYACRSVISPD 452
Query: 541 PYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGA 586
PY+ ++ IG+P FA LTYP VTPWN+ LR VING +PGA
Sbjct: 453 PYIGVNEIGIPPCFAVKLTYPERVTPWNIAKLRNAVINGSECHPGA 498
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 78/139 (56%), Gaps = 6/139 (4%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
+ + TD+EV++ S VK+ +P + + +PGGLYD A+GP+SER C TCG T
Sbjct: 18 ISFSFLTDEEVRKHSFVKITNPRLLDLVERPVPGGLYDPALGPLSER-TICKTCGQRSTN 76
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVT 243
C GH GHI+L PV N L F + LL+ +CFLC + I Q++L+ G +
Sbjct: 77 CPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFLCFHFRMQRGQVEKCIKQLELIVKGDIV 136
Query: 244 QAKDLE-----ETLFNEEN 257
AK LE E L+ EE+
Sbjct: 137 GAKRLESVSPSEALYPEES 155
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 38/53 (71%)
Query: 17 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGA 69
RSVI+PDPY+ ++ IG+P FA LTYP VTPWN+ LR VING +PGA
Sbjct: 446 RSVISPDPYIGVNEIGIPPCFAVKLTYPERVTPWNIAKLRNAVINGSECHPGA 498
>gi|242015075|ref|XP_002428200.1| DNA-directed RNA polymerase III largest subunit, putative
[Pediculus humanus corporis]
gi|212512752|gb|EEB15462.1| DNA-directed RNA polymerase III largest subunit, putative
[Pediculus humanus corporis]
Length = 1364
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 126/462 (27%), Positives = 192/462 (41%), Gaps = 105/462 (22%)
Query: 158 GLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLC 217
G+ D MG + + CTTC C GH G+I L +PV + +FR V ++L+ C C
Sbjct: 54 GVLDRQMGT-NTKDATCTTCNKGLADCIGHFGYINLELPVFHIGYFRSVIMILQTICKTC 112
Query: 218 HKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSIL 277
K+ +P +DL++T LRL + + L ++ +
Sbjct: 113 SKVLLP----------------------EDLKKTY----RLRLQNPKFLYLARKALRKQI 146
Query: 278 AHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDK 337
K I Y Q L+ VK+ + + + + F+ K
Sbjct: 147 HEKAKKISICPY-----------CQSLNGVVKKCGLL------------KLVHEKFRGSK 183
Query: 338 DNLDQSLDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWT--------NEHLFLKCLIP 389
D + K + +N + RE V+AS V L + + L C+ P
Sbjct: 184 STTDALMAKHIQAYNNVLEYDRELESVIASGVAFILTPLDVLNLLERIPEDDVCLLCMNP 243
Query: 390 VLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIM 449
+ ++L+ T L VPP +RP SVI
Sbjct: 244 AMVHPRDLMLT------RLPVPPLCVRP----------------------------SVIS 269
Query: 450 AMKNKEQSDLLSEALKGIR--GDTLNNKLQNSW--HELQYNVDLL-MDAKLNIN-KTTG- 502
+K+ D L+ L I D + Q+ H + + D L + L IN +TTG
Sbjct: 270 ELKSGTNEDDLTMKLSEIIFINDVIQKHRQSGAKVHMINEDWDFLQLHCALYINSETTGI 329
Query: 503 ------AHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAK 556
GL Q L GK G R N+ GKRV+F+ R+VI+PDP L ID +GVP AK
Sbjct: 330 PLSMQPKKATRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIDQVGVPEHVAK 389
Query: 557 TLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVR 598
LT+P V N+ LLR++V NGP+ +PGAN +++ +G+ R
Sbjct: 390 ILTFPEKVNRANIFLLRELVRNGPDTHPGANFVEDRNGNSKR 431
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 47/68 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID +GVP AK LT+P V N+ LLR++V NGP+ +PGAN ++
Sbjct: 364 FSSRTVISPDPNLQIDQVGVPEHVAKILTFPEKVNRANIFLLRELVRNGPDTHPGANFVE 423
Query: 74 NEDGSVVR 81
+ +G+ R
Sbjct: 424 DRNGNSKR 431
>gi|195168657|ref|XP_002025147.1| GL26742 [Drosophila persimilis]
gi|194108592|gb|EDW30635.1| GL26742 [Drosophila persimilis]
Length = 1804
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 131/457 (28%), Positives = 191/457 (41%), Gaps = 100/457 (21%)
Query: 157 GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFL 216
GGL D G I +R C TC N T+C GH GHI+L PV + F +L+ CF
Sbjct: 51 GGLMDPRQGVI-DRTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFY 109
Query: 217 CHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSI 276
C K+ + + I +I + G + +L + D
Sbjct: 110 CSKMLVSPHNPK--IKEIVVKSKGQPRK-------------------RLAYVYD------ 142
Query: 277 LAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKID 336
L G IC+ GGE++ Q + K C YQ I
Sbjct: 143 LCKGKTICE-----GGEDMDLTKDNQQPDPNKKPGHGGCG------HYQP-------SIR 184
Query: 337 KDNLDQSLD-KSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTK 395
+ LD S + K N+ S +E+ V+++E + K T+E F+ + P
Sbjct: 185 RTGLDLSAEWKHPNEDS------QEKKIVVSAERVWEILKHITDEECFILGMDP------ 232
Query: 396 ELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKE 455
+ D M + L VPP +RP +V+M K
Sbjct: 233 KYARPDWMIVTVLPVPPLAVRP----------------------------AVVMFGAAKN 264
Query: 456 QSDL---LSEALKGIRGDTLNNKLQNSWHELQYNVDLLMD--AKLNINKTTG---AHQID 507
Q DL LS+ +K N + H +Q N+ +L A L N G A Q
Sbjct: 265 QDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKS 324
Query: 508 G-----LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPV 562
G +K L GK G IR N+MGKRV+F+ R+VITPDP L ID +GVP A+ LT+P
Sbjct: 325 GKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPE 384
Query: 563 PVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
VTP+N+ ++++V G + YPGA I ++G + +
Sbjct: 385 LVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDL 421
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ LT+P VTP+N+ ++++V G + YPGA I
Sbjct: 353 FSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIV 412
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 413 RDNGERIDL 421
>gi|9587179|gb|AAF89193.1|AF272643_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587181|gb|AAF89194.1|AF272644_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587183|gb|AAF89195.1|AF272645_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587185|gb|AAF89196.1|AF272646_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587187|gb|AAF89197.1|AF272647_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587189|gb|AAF89198.1|AF272648_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587191|gb|AAF89199.1|AF272649_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587193|gb|AAF89200.1|AF272650_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587195|gb|AAF89201.1|AF272651_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587197|gb|AAF89202.1|AF272652_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587199|gb|AAF89203.1|AF272653_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|4808177|emb|CAB42800.1| largest subunit of the RNA polymerase II complex [Drosophila
subobscura]
Length = 1889
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 131/457 (28%), Positives = 191/457 (41%), Gaps = 100/457 (21%)
Query: 157 GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFL 216
GGL D G I +R C TC N T+C GH GHI+L PV + F +L+ CF
Sbjct: 51 GGLMDPRQGVI-DRTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFY 109
Query: 217 CHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSI 276
C K+ + + I +I + G + +L + D
Sbjct: 110 CSKMLVSPHNPK--IKEIVVKSKGQPRK-------------------RLAYVYD------ 142
Query: 277 LAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKID 336
L G IC+ GGE++ Q + K C YQ I
Sbjct: 143 LCKGKTICE-----GGEDMDLTKDNQQPDPNKKPGHGGCG------HYQP-------SIR 184
Query: 337 KDNLDQSLD-KSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTK 395
+ LD S + K N+ S +E+ V+++E + K T+E F+ + P
Sbjct: 185 RTGLDLSAEWKHPNEDS------QEKKIVVSAERVWEILKHITDEECFILGMDP------ 232
Query: 396 ELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKE 455
+ D M + L VPP +RP +V+M K
Sbjct: 233 KYARPDWMIVTVLPVPPLAVRP----------------------------AVVMFGAAKN 264
Query: 456 QSDL---LSEALKGIRGDTLNNKLQNSWHELQYNVDLLMD--AKLNINKTTG---AHQID 507
Q DL LS+ +K N + H +Q N+ +L A L N G A Q
Sbjct: 265 QDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKS 324
Query: 508 G-----LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPV 562
G +K L GK G IR N+MGKRV+F+ R+VITPDP L ID +GVP A+ LT+P
Sbjct: 325 GKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPE 384
Query: 563 PVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
VTP+N+ ++++V G + YPGA I ++G + +
Sbjct: 385 LVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDL 421
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ LT+P VTP+N+ ++++V G + YPGA I
Sbjct: 353 FSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIV 412
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 413 RDNGERIDL 421
>gi|324120532|dbj|BAJ78657.1| RNA polymerase II largest subunit [Galloisiana yuasai]
Length = 1904
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 133/489 (27%), Positives = 204/489 (41%), Gaps = 112/489 (22%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E++++SV + + P T+ G GGL D G I +R C TC N T+C GH GH
Sbjct: 25 EIRRMSVTEGGIRFPETYEG-GRPKLGGLMDPRQGVI-DRNSRCQTCAGNQTECPGHFGH 82
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
I+L PV + F +L+ CF C K+ + T+ I ++ + G
Sbjct: 83 IDLAKPVFHVGFITKTIKILRCVCFYCSKMLVSPTNPK--IKEVVMKSKG---------- 130
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKR 310
P + + V L G IC+ GG+E+
Sbjct: 131 ----------QPRKRLTFVYD-----LCKGKNICE-----GGDEMD-------------- 156
Query: 311 KCIFCATPINAISYQQRKIIKSF------KIDKDNLDQSLD-KSLNKSSNQIIRKREQGY 363
I P + S Q RK I + LD + + K +N+ S +E+
Sbjct: 157 --IQKDNPDDPNSQQPRKAGHGGCGRYQPSIRRIGLDLTAEWKHINEDS------QEKKI 208
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQM 423
+++E + K T+E F +L + D M I L VPP +RP
Sbjct: 209 SLSAERVWEILKHITDEECF------ILGMDHKFARPDWMIITVLPVPPLCVRP------ 256
Query: 424 PPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDL---LSEALKGIRGDTLNNKLQNSW 480
+V+M + Q DL L++ +K N + +
Sbjct: 257 ----------------------AVVMYGSARNQDDLTHKLADIIKSNNELVRNEQAGAAA 294
Query: 481 HELQYNVDLLMD--AKLNINKTTG---AHQIDG-----LKQMLDGKTGMIRQNMMGKRVN 530
H + N+ +L A L N G A Q G +K L GK G IR N+MGKRV+
Sbjct: 295 HVISENIKMLQFHVATLIDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVD 354
Query: 531 FAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 590
F+ R+VITPDP L ID +GVP A+ +T+P VTP+N+ ++++V G + YPGA I
Sbjct: 355 FSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNIDKMQELVRRGNSQYPGAKYIV 414
Query: 591 NEDGSVVRI 599
++G + +
Sbjct: 415 RDNGERIDL 423
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 45/69 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ +T+P VTP+N+ ++++V G + YPGA I
Sbjct: 355 FSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNIDKMQELVRRGNSQYPGAKYIV 414
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 415 RDNGERIDL 423
>gi|410979885|ref|XP_003996311.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Felis
catus]
Length = 1817
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 130/479 (27%), Positives = 209/479 (43%), Gaps = 95/479 (19%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E+K++SV + + P T G GGL D G I ER C TC N T+C GH GH
Sbjct: 30 ELKRMSVTEGGIKYPETTEG-GRPKLGGLMDPRQGVI-ERTGRCQTCAGNMTECPGHFGH 87
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
IEL PV + F +L+ CF C K+ + + + +IK + A Q K
Sbjct: 88 IELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNP-----KIKDILAKSKGQPK---- 138
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQV------L 304
+L + D L G IC+ GGEE+ + F + L
Sbjct: 139 ------------KRLTHVYD------LCKGKNICE-----GGEEMDNKFGVEQPEGDEDL 175
Query: 305 SRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGY 363
++ ++ C YQ R I + L+ + K +N+ S +E+
Sbjct: 176 AK--EKGHGGCG------RYQPR-------IRRSGLELYAEWKHVNEDS------QEKKI 214
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQM 423
+++ E + K ++E F VL + M + L VPP ++RP + Q
Sbjct: 215 LLSPERVHEIFKRISDEECF------VLGMEPRFARPEWMIVTVLPVPPLSVRPAVVMQ- 267
Query: 424 PPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHEL 483
+ + + + ++ EQ+ + + + KL L
Sbjct: 268 -----GSAXXQDDLTHKLADIVKINNQLRRNEQNGAAAHVI------AEDVKL------L 310
Query: 484 QYNVDLLMDAKL-----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
Q++V ++D +L + K+ + LKQ L GK G +R N+MGKRV+F+ R+VIT
Sbjct: 311 QFHVATMVDNELPGLPRAMQKS--GRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
PDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I ++G +
Sbjct: 369 PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRI 427
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I
Sbjct: 361 FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII 420
Query: 74 NEDGSVV 80
++G +
Sbjct: 421 RDNGDRI 427
>gi|4808162|emb|CAB42796.1| largest subunit of the RNA polymerase II complex [Drosophila
madeirensis]
Length = 1889
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 131/457 (28%), Positives = 191/457 (41%), Gaps = 100/457 (21%)
Query: 157 GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFL 216
GGL D G I +R C TC N T+C GH GHI+L PV + F +L+ CF
Sbjct: 51 GGLMDPRQGVI-DRTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFY 109
Query: 217 CHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSI 276
C K+ + + I +I + G + +L + D
Sbjct: 110 CSKMLVSPHNPK--IKEIVVKSKGQPRK-------------------RLAYVYD------ 142
Query: 277 LAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKID 336
L G IC+ GGE++ Q + K C YQ I
Sbjct: 143 LCKGKTICE-----GGEDMDLTKDNQQPDPNKKPGHGGCG------HYQP-------SIR 184
Query: 337 KDNLDQSLD-KSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTK 395
+ LD S + K N+ S +E+ V+++E + K T+E F+ + P
Sbjct: 185 RTGLDLSAEWKHPNEDS------QEKKIVVSAERVWEILKHITDEECFILGMDP------ 232
Query: 396 ELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKE 455
+ D M + L VPP +RP +V+M K
Sbjct: 233 KYARPDWMIVTVLPVPPLAVRP----------------------------AVVMFGAAKN 264
Query: 456 QSDL---LSEALKGIRGDTLNNKLQNSWHELQYNVDLLMD--AKLNINKTTG---AHQID 507
Q DL LS+ +K N + H +Q N+ +L A L N G A Q
Sbjct: 265 QDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKS 324
Query: 508 G-----LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPV 562
G +K L GK G IR N+MGKRV+F+ R+VITPDP L ID +GVP A+ LT+P
Sbjct: 325 GKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPE 384
Query: 563 PVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
VTP+N+ ++++V G + YPGA I ++G + +
Sbjct: 385 LVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDL 421
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ LT+P VTP+N+ ++++V G + YPGA I
Sbjct: 353 FSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIV 412
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 413 RDNGERIDL 421
>gi|448307075|ref|ZP_21496976.1| DNA-directed RNA polymerase subunit A' [Natronorubrum bangense JCM
10635]
gi|445596622|gb|ELY50707.1| DNA-directed RNA polymerase subunit A' [Natronorubrum bangense JCM
10635]
Length = 973
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 131/497 (26%), Positives = 207/497 (41%), Gaps = 80/497 (16%)
Query: 135 KQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELP 194
+ LSV KV + T++ G I GL D +G I + G C TCG + C GH GHIEL
Sbjct: 23 RDLSVTKVITADTYDDDGFPIDMGLMDTRLGVI-DPGLECPTCGQHSGSCPGHFGHIELA 81
Query: 195 VPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFN 254
PVI+ F +L+ +L C + S+LL K ++ E L
Sbjct: 82 APVIHVGF---TKLIRRLLRGTCREC-----SRLLLTEDEK----------EEFRERLAE 123
Query: 255 EENLRLHPAQLVQLV--DSHVQSILAHGTKICDINDYKGGEELRSAF--VAQVL-SRHVK 309
+ L P +++ + + H C Y E + + V QVL S + +
Sbjct: 124 AKRLSRDPQDVLKAAIRQARKKDRCPH----CGEVQYDIDHEKPTTYYEVQQVLTSEYSQ 179
Query: 310 RKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEV 369
R + ++ ID +++ L S +Q RK + +
Sbjct: 180 RIAAAMQGGEDGKRMSPDELADETDIDLTRINEILSGSFRPRESQ--RKSIEKALDIDLT 237
Query: 370 EADFKKLWTNE-HLFLKCL----IPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMP 424
E D KL ++ + + + I VL E + M + L VPP RP
Sbjct: 238 EEDTNKLMPSDIRDWFEAIPDEDIEVLGINSERSRPEWMILTVLPVPPVTTRP------- 290
Query: 425 PVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDT--LNNK------- 475
S+ + + + DL + + IR + + N+
Sbjct: 291 ---------------------SITLDNGQRSEDDLTHKLVDIIRINQRFMENREAGAPQL 329
Query: 476 -LQNSWHELQYNVDLLMDAKLNINKTTGAHQIDG-----LKQMLDGKTGMIRQNMMGKRV 529
+++ W LQY+V MD + I+ T A G L Q L GK G R ++ GKRV
Sbjct: 330 IIEDLWELLQYHVTTFMDNE--ISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRV 387
Query: 530 NFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 589
NF+ R+VI+PDP L+++ +GVP AK +T + VT N+ R+ V NGP +PGAN +
Sbjct: 388 NFSARTVISPDPTLSLNEVGVPDRVAKEMTQTMNVTERNLEEARRFVSNGPEGHPGANYV 447
Query: 590 QNEDGSVVRISSSQAVQ 606
+ DG ++++ Q
Sbjct: 448 RRPDGRRLKVTEKNCEQ 464
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 46/76 (60%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L+++ +GVP AK +T + VT N+ R+ V NGP +PGAN ++
Sbjct: 389 FSARTVISPDPTLSLNEVGVPDRVAKEMTQTMNVTERNLEEARRFVSNGPEGHPGANYVR 448
Query: 74 NEDGSVVRISSSQAVQ 89
DG ++++ Q
Sbjct: 449 RPDGRRLKVTEKNCEQ 464
>gi|195996443|ref|XP_002108090.1| hypothetical protein TRIADDRAFT_49721 [Trichoplax adhaerens]
gi|190588866|gb|EDV28888.1| hypothetical protein TRIADDRAFT_49721 [Trichoplax adhaerens]
Length = 1784
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 124/446 (27%), Positives = 184/446 (41%), Gaps = 86/446 (19%)
Query: 158 GLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLC 217
GL D GP+ +R C TC +C GH GHIEL PV + F +L+ CF C
Sbjct: 54 GLLDPRQGPV-DRSSRCQTCAGTVNECPGHFGHIELARPVFHIGFLVKSIKILRCVCFYC 112
Query: 218 HKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSIL 277
K+ L+ + K++D T+ + LR+ + L S
Sbjct: 113 SKL-------LIKKSDPKVIDIISKTRGR-----------LRVRLQHIYDLCKSK----- 149
Query: 278 AHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDK 337
IC +D + E L RH PI I +
Sbjct: 150 ----NICQNDDGEDAEGLDEKKEHSGCGRH---------QPI---------------IRR 181
Query: 338 DNLDQSLD-KSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKE 396
+ L+ + + K +N+ S + RK + A V FK++ + VL
Sbjct: 182 NGLELTAEWKKINEDSQE--RKIN---LTAERVYEIFKRISDEDS-------EVLGMDPR 229
Query: 397 LIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQ 456
D M I L VPP ++RP V H + + + L +I A N ++
Sbjct: 230 FARPDWMIITCLPVPPLHVRPSV------VMHGSARSQDDLTHK---LADIIKANNNLQR 280
Query: 457 SDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKL-NINKT--TGAHQIDGLKQML 513
++ I DT LQ++V L D ++ + K + +KQ L
Sbjct: 281 NESCGAPAHVITEDT---------RMLQFHVTTLTDNEVPGMPKAMQKSGRPLKSIKQRL 331
Query: 514 DGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLR 573
GK G IR N+MGKRV+F+ R+VITPD L ID +GVP A+TL+YP VTP N+ +
Sbjct: 332 KGKEGRIRGNLMGKRVDFSARTVITPDSNLEIDQVGVPRSIAQTLSYPEIVTPLNIDRMY 391
Query: 574 KMVINGPNVYPGANMIQNEDGSVVRI 599
+V GP+ YPGA + E G + +
Sbjct: 392 VLVRRGPDHYPGAKYVIRESGERINL 417
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 53/101 (52%), Gaps = 5/101 (4%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPD L ID +GVP A+TL+YP VTP N+ + +V GP+ YPGA +
Sbjct: 349 FSARTVITPDSNLEIDQVGVPRSIAQTLSYPEIVTPLNIDRMYVLVRRGPDHYPGAKYVI 408
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKII 114
E G RI+ R+ L D+ R I + II
Sbjct: 409 RESGE--RINLKFRASRDDLTLHF---GDKVERHIQNDDII 444
>gi|194889556|ref|XP_001977109.1| RNA polymerase II 215kD subunit [Drosophila erecta]
gi|190648758|gb|EDV46036.1| RNA polymerase II 215kD subunit [Drosophila erecta]
Length = 1889
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 130/457 (28%), Positives = 191/457 (41%), Gaps = 100/457 (21%)
Query: 157 GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFL 216
GGL D G I +R C TC N T+C GH GHI+L PV + F +L+ CF
Sbjct: 51 GGLMDPRQGVI-DRTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFY 109
Query: 217 CHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSI 276
C K+ + + I +I + G + +L + D
Sbjct: 110 CSKMLVSPHNPK--IKEIVMKSKGQPRK-------------------RLAYVYD------ 142
Query: 277 LAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKID 336
L G IC+ GGE++ Q + K C YQ I
Sbjct: 143 LCKGKTICE-----GGEDMDITKGNQQPDPNKKPGHGGCG------HYQP-------SIR 184
Query: 337 KDNLDQSLD-KSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTK 395
+ LD + + K N+ S +E+ V+++E + K T+E F+ + P
Sbjct: 185 RTGLDLTAEWKHQNEDS------QEKKIVVSAERVWEILKHITDEECFILGMDP------ 232
Query: 396 ELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKE 455
+ D M + L VPP +RP +V+M K
Sbjct: 233 KYARPDWMIVTVLPVPPLAVRP----------------------------AVVMFGAAKN 264
Query: 456 QSDL---LSEALKGIRGDTLNNKLQNSWHELQYNVDLLMD--AKLNINKTTG---AHQID 507
Q DL LS+ +K N + H +Q N+ +L A L N G A Q
Sbjct: 265 QDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKS 324
Query: 508 G-----LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPV 562
G +K L GK G IR N+MGKRV+F+ R+VITPDP L ID +GVP A+ LT+P
Sbjct: 325 GKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPE 384
Query: 563 PVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
VTP+N+ ++++V G + YPGA I ++G + +
Sbjct: 385 LVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDL 421
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ LT+P VTP+N+ ++++V G + YPGA I
Sbjct: 353 FSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIV 412
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 413 RDNGERIDL 421
>gi|195479340|ref|XP_002100852.1| RNA polymerase II 215kD subunit [Drosophila yakuba]
gi|194188376|gb|EDX01960.1| RNA polymerase II 215kD subunit [Drosophila yakuba]
Length = 1889
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 130/457 (28%), Positives = 191/457 (41%), Gaps = 100/457 (21%)
Query: 157 GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFL 216
GGL D G I +R C TC N T+C GH GHI+L PV + F +L+ CF
Sbjct: 51 GGLMDPRQGVI-DRTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFY 109
Query: 217 CHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSI 276
C K+ + + I +I + G + +L + D
Sbjct: 110 CSKMLVSPHNPK--IKEIVMKSKGQPRK-------------------RLAYVYD------ 142
Query: 277 LAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKID 336
L G IC+ GGE++ Q + K C YQ I
Sbjct: 143 LCKGKTICE-----GGEDMDLTKENQQPDPNKKPGHGGCG------HYQP-------SIR 184
Query: 337 KDNLDQSLD-KSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTK 395
+ LD + + K N+ S +E+ V+++E + K T+E F+ + P
Sbjct: 185 RTGLDLTAEWKHQNEDS------QEKKIVVSAERVWEILKHITDEECFILGMDP------ 232
Query: 396 ELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKE 455
+ D M + L VPP +RP +V+M K
Sbjct: 233 KYARPDWMIVTVLPVPPLAVRP----------------------------AVVMFGAAKN 264
Query: 456 QSDL---LSEALKGIRGDTLNNKLQNSWHELQYNVDLLMD--AKLNINKTTG---AHQID 507
Q DL LS+ +K N + H +Q N+ +L A L N G A Q
Sbjct: 265 QDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKS 324
Query: 508 G-----LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPV 562
G +K L GK G IR N+MGKRV+F+ R+VITPDP L ID +GVP A+ LT+P
Sbjct: 325 GKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPE 384
Query: 563 PVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
VTP+N+ ++++V G + YPGA I ++G + +
Sbjct: 385 LVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDL 421
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ LT+P VTP+N+ ++++V G + YPGA I
Sbjct: 353 FSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIV 412
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 413 RDNGERIDL 421
>gi|324120570|dbj|BAJ78676.1| RNA polymerase II largest subunit [Neocolochelyna itoi]
Length = 1815
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 132/481 (27%), Positives = 201/481 (41%), Gaps = 101/481 (20%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E++++SV + P T G GGL D G I +R C TC N T+C GH GH
Sbjct: 25 EIRRMSVTDGGIRFPETMEG-GRPKLGGLMDPRQGVI-DRNSRCQTCAGNMTECPGHFGH 82
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
I+L PV + F +L+ CF C K+ L+ + K+ + T+ + +
Sbjct: 83 IDLAKPVFHVGFITKSIKILRCVCFYCSKL-------LVSPHNPKIKEVVMKTKGQPRKR 135
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKR 310
F + L IC+ GG+E+ Q + R
Sbjct: 136 LTFVYD--------------------LCKSKNICE-----GGDEMDINKEGQEQPQAADR 170
Query: 311 KCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGYVMASEV 369
K YQ + + LD S + K +N+ S +E+ V+ +E
Sbjct: 171 KPGHGGCG----RYQP-------NLRRSGLDVSAEWKHVNEDS------QEKKIVLTAER 213
Query: 370 EADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHS 429
+ K T+E F+ + P + D M + L VPP ++RP
Sbjct: 214 AWEILKHITDEESFILGMDP------KFARPDWMIVTVLPVPPLSVRP------------ 255
Query: 430 RNKLYQSILYSCGSLKSVIMAMKNKEQSDL---LSEALKGIRGDTLNNKLQNSWHELQYN 486
+V+M K Q DL L++ +K N + + H + N
Sbjct: 256 ----------------AVVMYGSAKNQDDLTHKLADIIKSNNELLRNEQAGAAAHVISEN 299
Query: 487 VDLLMD--AKLNINKTTG---AHQIDG-----LKQMLDGKTGMIRQNMMGKRVNFAGRSV 536
+ +L A L N G A Q G +K L GK G IR N+MGKRV+F+ R+V
Sbjct: 300 IKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTV 359
Query: 537 ITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSV 596
ITPDP L ID +GVP A+ LT+P VTP+N+ ++++V G + YPGA I ++G
Sbjct: 360 ITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPGAKYIVRDNGER 419
Query: 597 V 597
+
Sbjct: 420 I 420
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 44/67 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ LT+P VTP+N+ ++++V G + YPGA I
Sbjct: 354 FSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPGAKYIV 413
Query: 74 NEDGSVV 80
++G +
Sbjct: 414 RDNGERI 420
>gi|162951789|gb|ABY21756.1| RE30267p [Drosophila melanogaster]
Length = 1887
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 130/457 (28%), Positives = 191/457 (41%), Gaps = 100/457 (21%)
Query: 157 GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFL 216
GGL D G I +R C TC N T+C GH GHI+L PV + F +L+ CF
Sbjct: 51 GGLMDPRQGVI-DRTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFY 109
Query: 217 CHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSI 276
C K+ + + I +I + G + +L + D
Sbjct: 110 CSKMLVSPHNPK--IKEIVMKSRGQPRK-------------------RLAYVYD------ 142
Query: 277 LAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKID 336
L G IC+ GGE++ Q + K C YQ I
Sbjct: 143 LCKGKTICE-----GGEDMDLTKENQQPDPNKKPGHGGCG------HYQP-------SIR 184
Query: 337 KDNLDQSLD-KSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTK 395
+ LD + + K N+ S +E+ V+++E + K T+E F+ + P
Sbjct: 185 RTGLDLTAEWKHQNEDS------QEKKIVVSAERVWEILKHITDEECFILGMDP------ 232
Query: 396 ELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKE 455
+ D M + L VPP +RP +V+M K
Sbjct: 233 KYARPDWMIVTVLPVPPLAVRP----------------------------AVVMFGAAKN 264
Query: 456 QSDL---LSEALKGIRGDTLNNKLQNSWHELQYNVDLLMD--AKLNINKTTG---AHQID 507
Q DL LS+ +K N + H +Q N+ +L A L N G A Q
Sbjct: 265 QDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKS 324
Query: 508 G-----LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPV 562
G +K L GK G IR N+MGKRV+F+ R+VITPDP L ID +GVP A+ LT+P
Sbjct: 325 GKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPE 384
Query: 563 PVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
VTP+N+ ++++V G + YPGA I ++G + +
Sbjct: 385 LVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDL 421
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ LT+P VTP+N+ ++++V G + YPGA I
Sbjct: 353 FSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIV 412
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 413 RDNGERIDL 421
>gi|158332|gb|AAA28868.1| RNA polymerase II [Drosophila melanogaster]
Length = 1896
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 130/457 (28%), Positives = 191/457 (41%), Gaps = 100/457 (21%)
Query: 157 GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFL 216
GGL D G I +R C TC N T+C GH GHI+L PV + F +L+ CF
Sbjct: 51 GGLMDPRQGVI-DRTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFY 109
Query: 217 CHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSI 276
C K+ + + I +I + G + +L + D
Sbjct: 110 CSKMLVSPHNPK--IKEIVMKSRGQPRK-------------------RLAYVYD------ 142
Query: 277 LAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKID 336
L G IC+ GGE++ Q + K C YQ I
Sbjct: 143 LCKGKTICE-----GGEDMDLTKENQQPDPNKKPGHGGCG------HYQP-------SIR 184
Query: 337 KDNLDQSLD-KSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTK 395
+ LD + + K N+ S +E+ V+++E + K T+E F+ + P
Sbjct: 185 RTGLDLTAEWKHQNEDS------QEKKIVVSAERVWEILKHITDEECFILGMDP------ 232
Query: 396 ELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKE 455
+ D M + L VPP +RP +V+M K
Sbjct: 233 KYARPDWMIVTVLPVPPLAVRP----------------------------AVVMFGAAKN 264
Query: 456 QSDL---LSEALKGIRGDTLNNKLQNSWHELQYNVDLLMD--AKLNINKTTG---AHQID 507
Q DL LS+ +K N + H +Q N+ +L A L N G A Q
Sbjct: 265 QDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKS 324
Query: 508 G-----LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPV 562
G +K L GK G IR N+MGKRV+F+ R+VITPDP L ID +GVP A+ LT+P
Sbjct: 325 GKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPE 384
Query: 563 PVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
VTP+N+ ++++V G + YPGA I ++G + +
Sbjct: 385 LVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDL 421
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ LT+P VTP+N+ ++++V G + YPGA I
Sbjct: 353 FSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIV 412
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 413 RDNGERIDL 421
>gi|195355215|ref|XP_002044088.1| GM13065 [Drosophila sechellia]
gi|194129357|gb|EDW51400.1| GM13065 [Drosophila sechellia]
Length = 1887
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 130/457 (28%), Positives = 191/457 (41%), Gaps = 100/457 (21%)
Query: 157 GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFL 216
GGL D G I +R C TC N T+C GH GHI+L PV + F +L+ CF
Sbjct: 51 GGLMDPRQGVI-DRTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFY 109
Query: 217 CHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSI 276
C K+ + + I +I + G + +L + D
Sbjct: 110 CSKMLVSPHNPK--IKEIVMKSRGQPRK-------------------RLAYVYD------ 142
Query: 277 LAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKID 336
L G IC+ GGE++ Q + K C YQ I
Sbjct: 143 LCKGKTICE-----GGEDMDLTKENQQPDPNKKPGHGGCG------HYQP-------SIR 184
Query: 337 KDNLDQSLD-KSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTK 395
+ LD + + K N+ S +E+ V+++E + K T+E F+ + P
Sbjct: 185 RTGLDLTAEWKHQNEDS------QEKKIVVSAERVWEILKHITDEECFILGMDP------ 232
Query: 396 ELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKE 455
+ D M + L VPP +RP +V+M K
Sbjct: 233 KYARPDWMIVTVLPVPPLAVRP----------------------------AVVMFGAAKN 264
Query: 456 QSDL---LSEALKGIRGDTLNNKLQNSWHELQYNVDLLMD--AKLNINKTTG---AHQID 507
Q DL LS+ +K N + H +Q N+ +L A L N G A Q
Sbjct: 265 QDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKS 324
Query: 508 G-----LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPV 562
G +K L GK G IR N+MGKRV+F+ R+VITPDP L ID +GVP A+ LT+P
Sbjct: 325 GKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPE 384
Query: 563 PVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
VTP+N+ ++++V G + YPGA I ++G + +
Sbjct: 385 LVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDL 421
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ LT+P VTP+N+ ++++V G + YPGA I
Sbjct: 353 FSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIV 412
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 413 RDNGERIDL 421
>gi|17530899|ref|NP_511124.1| RNA polymerase II 215kD subunit [Drosophila melanogaster]
gi|14286163|sp|P04052.4|RPB1_DROME RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase III largest subunit
gi|7292659|gb|AAF48057.1| RNA polymerase II 215kD subunit [Drosophila melanogaster]
gi|269954742|gb|ACZ54678.1| FI12846p [Drosophila melanogaster]
Length = 1887
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 130/457 (28%), Positives = 191/457 (41%), Gaps = 100/457 (21%)
Query: 157 GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFL 216
GGL D G I +R C TC N T+C GH GHI+L PV + F +L+ CF
Sbjct: 51 GGLMDPRQGVI-DRTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFY 109
Query: 217 CHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSI 276
C K+ + + I +I + G + +L + D
Sbjct: 110 CSKMLVSPHNPK--IKEIVMKSRGQPRK-------------------RLAYVYD------ 142
Query: 277 LAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKID 336
L G IC+ GGE++ Q + K C YQ I
Sbjct: 143 LCKGKTICE-----GGEDMDLTKENQQPDPNKKPGHGGCG------HYQP-------SIR 184
Query: 337 KDNLDQSLD-KSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTK 395
+ LD + + K N+ S +E+ V+++E + K T+E F+ + P
Sbjct: 185 RTGLDLTAEWKHQNEDS------QEKKIVVSAERVWEILKHITDEECFILGMDP------ 232
Query: 396 ELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKE 455
+ D M + L VPP +RP +V+M K
Sbjct: 233 KYARPDWMIVTVLPVPPLAVRP----------------------------AVVMFGAAKN 264
Query: 456 QSDL---LSEALKGIRGDTLNNKLQNSWHELQYNVDLLMD--AKLNINKTTG---AHQID 507
Q DL LS+ +K N + H +Q N+ +L A L N G A Q
Sbjct: 265 QDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKS 324
Query: 508 G-----LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPV 562
G +K L GK G IR N+MGKRV+F+ R+VITPDP L ID +GVP A+ LT+P
Sbjct: 325 GKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPE 384
Query: 563 PVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
VTP+N+ ++++V G + YPGA I ++G + +
Sbjct: 385 LVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDL 421
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ LT+P VTP+N+ ++++V G + YPGA I
Sbjct: 353 FSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIV 412
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 413 RDNGERIDL 421
>gi|308229958|gb|ADO24386.1| RNA polymerase II large subunit, partial [Drosophila quinaria]
Length = 1847
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 128/457 (28%), Positives = 193/457 (42%), Gaps = 100/457 (21%)
Query: 157 GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFL 216
GGL D G I +R C TC N T+C GH GHI+L PV + F +L+ CF
Sbjct: 32 GGLMDPRQGVI-DRTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFY 90
Query: 217 CHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSI 276
C K+ + + I +I + G + +L + D
Sbjct: 91 CSKMLVSPHNPK--IKEIVVKSKGQPRK-------------------RLAYVYD------ 123
Query: 277 LAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKID 336
L G IC+ GGE++ Q + + K C YQ I
Sbjct: 124 LCKGKTICE-----GGEDMDLTKDNQQVDPNKKPGHGGCG------HYQP-------SIR 165
Query: 337 KDNLDQSLD-KSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTK 395
+ LD + + K +N+ S +E+ ++++E + K T+E F+ + P
Sbjct: 166 RTGLDLTAEWKHVNEDS------QEKKIIVSAERVWEILKHITDEECFILGMDP------ 213
Query: 396 ELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKE 455
+ D M + L VPP +RP +V+M K
Sbjct: 214 KYARPDWMIVTVLPVPPLAVRP----------------------------AVVMFGAAKN 245
Query: 456 QSDL---LSEALKGIRGDTLNNKLQNSWHELQYNVDLLMD--AKLNINKTTG---AHQID 507
Q DL L++ +K N + H +Q N+ +L A L N G A Q
Sbjct: 246 QDDLTHKLADIIKANNELRKNEASGAAAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKS 305
Query: 508 G-----LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPV 562
G +K L GK G IR N+MGKRV+F+ R+VITPDP L ID +GVP A+ LT+P
Sbjct: 306 GKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPE 365
Query: 563 PVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
VTP+N+ ++++V G + YPGA I ++G + +
Sbjct: 366 LVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDL 402
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ LT+P VTP+N+ ++++V G + YPGA I
Sbjct: 334 FSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIV 393
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 394 RDNGERIDL 402
>gi|194758651|ref|XP_001961575.1| GF14868 [Drosophila ananassae]
gi|190615272|gb|EDV30796.1| GF14868 [Drosophila ananassae]
Length = 1301
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 132/507 (26%), Positives = 211/507 (41%), Gaps = 115/507 (22%)
Query: 133 EVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIE 192
E++Q S+V++ S + + +P G+ D MG I + C TCG +C GH G+++
Sbjct: 27 EIQQESLVRIISKNLYQAQRQPVPFGVLDRRMG-IGTKDAMCETCGQGLNECIGHFGYLD 85
Query: 193 LPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETL 252
L +PV + FR +L++ C C ++ + + +F E+ L
Sbjct: 86 LALPVFHIGHFRSTINILQMICKTCAQVMLKTEDRAVF------------------EKKL 127
Query: 253 FNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKC 312
N L L HVQ +LA K+ KC
Sbjct: 128 HNPNFSYLGKKAL------HVQ-MLAKAKKVT--------------------------KC 154
Query: 313 IFCATPINAISYQQRKIIKSFKIDKDNL-DQSLDKSLNKSSNQIIRKREQGYVMASEVEA 371
C +P + +K KI D + +D + + N+++R E ++ A
Sbjct: 155 PHCGSPNGGV----KKGPGLLKILHDPYKGRKVDSAFTNNMNEMLRSTEAN----RDLNA 206
Query: 372 DFKKLWTNEHLFLKCLIPVLDTTKELIATDI--------------MFIRSLVVPPNNLRP 417
T E L + VLD +++ +D+ + + + VPP +RP
Sbjct: 207 TLSSYSTAEEL---TPLMVLDLFEQIPQSDVALLGMCSRGAHPKNLIVTRVFVPPACIRP 263
Query: 418 --LSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMA-MKNKEQSDLLSEALKGIRGDTLNN 474
LS + E IL + VI M + +L+ E
Sbjct: 264 SVLSEVKAGTTEDDLTMKQSEILL----INDVIQRHMATGGKIELIHE------------ 307
Query: 475 KLQNSWHELQYNVDLLMDAKLN---IN----KTTGAHQIDGLKQMLDGKTGMIRQNMMGK 527
W LQ +V L ++++ IN KTT G+ Q L GK G R N+ GK
Sbjct: 308 ----DWDFLQLHVALYFHSEISGIPINMAPKKTT-----RGIVQRLKGKQGRFRCNLSGK 358
Query: 528 RVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGAN 587
RV+F+GR+VI+PDP L I+ +GVP+ AK LTYP V N+ +R++V NGP+ +PGAN
Sbjct: 359 RVDFSGRTVISPDPNLMINQVGVPVRVAKILTYPERVNQANMRHMRQLVRNGPSTHPGAN 418
Query: 588 MIQNEDGSVVRISSSQAVQRESLAKRL 614
+Q S + + RE +A+ L
Sbjct: 419 YVQQRGSSFKKYLAYG--NREKVAQEL 443
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L I+ +GVP+ AK LTYP V N+ +R++V NGP+ +PGAN +Q
Sbjct: 362 FSGRTVISPDPNLMINQVGVPVRVAKILTYPERVNQANMRHMRQLVRNGPSTHPGANYVQ 421
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
S + + RE +A+ L
Sbjct: 422 QRGSSFKKYLAYG--NREKVAQEL 443
>gi|194762514|ref|XP_001963379.1| GF20366 [Drosophila ananassae]
gi|190629038|gb|EDV44455.1| GF20366 [Drosophila ananassae]
Length = 1889
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 130/457 (28%), Positives = 191/457 (41%), Gaps = 100/457 (21%)
Query: 157 GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFL 216
GGL D G I +R C TC N T+C GH GHI+L PV + F +L+ CF
Sbjct: 51 GGLMDPRQGVI-DRTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFY 109
Query: 217 CHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSI 276
C K+ + + I +I + G + +L + D
Sbjct: 110 CSKMLVSPHNPK--IKEIVMKSKGQPRK-------------------RLAYVYD------ 142
Query: 277 LAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKID 336
L G IC+ GGE++ Q + K C YQ I
Sbjct: 143 LCKGKTICE-----GGEDMDLTKENQQPDPNKKPGHGGCG------HYQP-------SIR 184
Query: 337 KDNLDQSLD-KSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTK 395
+ LD + + K N+ S +E+ V+++E + K T+E F+ + P
Sbjct: 185 RTGLDLTAEWKHPNEDS------QEKKIVVSAERVWEILKHITDEECFILGMDP------ 232
Query: 396 ELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKE 455
+ D M + L VPP +RP +V+M K
Sbjct: 233 KYARPDWMIVTVLPVPPLAVRP----------------------------AVVMFGAAKN 264
Query: 456 QSDL---LSEALKGIRGDTLNNKLQNSWHELQYNVDLLMD--AKLNINKTTG---AHQID 507
Q DL LS+ +K N + H +Q N+ +L A L N G A Q
Sbjct: 265 QDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKS 324
Query: 508 G-----LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPV 562
G +K L GK G IR N+MGKRV+F+ R+VITPDP L ID +GVP A+ LT+P
Sbjct: 325 GKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPE 384
Query: 563 PVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
VTP+N+ ++++V G + YPGA I ++G + +
Sbjct: 385 LVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDL 421
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ LT+P VTP+N+ ++++V G + YPGA I
Sbjct: 353 FSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIV 412
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 413 RDNGERIDL 421
>gi|324120556|dbj|BAJ78669.1| RNA polymerase II largest subunit [Thrips palmi]
Length = 1708
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 129/461 (27%), Positives = 189/461 (40%), Gaps = 109/461 (23%)
Query: 157 GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFL 216
GGL D G I +R C TC N T+C GH GHI+L PV + F +L+ CF
Sbjct: 30 GGLMDPRQGVI-DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFY 88
Query: 217 CHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSI 276
C K+ + + I +I + G P + + V
Sbjct: 89 CSKLLVSPNNPK--IKEIVMKSKG--------------------QPRKRLTFVYD----- 121
Query: 277 LAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSF--- 333
L G IC+ GG+E+ + P + QQRK
Sbjct: 122 LCKGKHICE-----GGDEMD----------------MNKDNPDDPGKEQQRKQGHGGCGR 160
Query: 334 ---KIDKDNLDQSLD-KSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIP 389
+ + LD S + K +N+ S +E+ + +E + K T+E F+ + P
Sbjct: 161 YQPNLRRVGLDVSAEWKHINEDS------QEKKIALTAERVWEILKHITDEECFILGMDP 214
Query: 390 VLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIM 449
+ D M + L VPP +RP +V+M
Sbjct: 215 ------KFARPDWMIVTCLPVPPLCVRP----------------------------AVVM 240
Query: 450 AMKNKEQSDL---LSEALKGIRGDTLNNKLQNSWHELQYNVDLLMD--AKLNINKTTG-- 502
+ Q DL LS+ LK N + + H L N+ +L A L N G
Sbjct: 241 YGSARNQDDLTHKLSDILKANNELLRNEQAGAATHVLAENIKMLQFHVATLVDNDMPGLP 300
Query: 503 -AHQIDG-----LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAK 556
A Q G +K L GK G IR N+MGKRV+F+ R+VITPDP L ID +GVP A+
Sbjct: 301 RAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQ 360
Query: 557 TLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
LT+P VTP+N+ ++++V G + YPGA I ++G +
Sbjct: 361 NLTFPEIVTPFNIDKMQELVRRGNSQYPGAKYIVRDNGERI 401
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 44/67 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ LT+P VTP+N+ ++++V G + YPGA I
Sbjct: 335 FSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPGAKYIV 394
Query: 74 NEDGSVV 80
++G +
Sbjct: 395 RDNGERI 401
>gi|195399163|ref|XP_002058190.1| GJ15949 [Drosophila virilis]
gi|194150614|gb|EDW66298.1| GJ15949 [Drosophila virilis]
Length = 1889
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 129/460 (28%), Positives = 195/460 (42%), Gaps = 106/460 (23%)
Query: 157 GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFL 216
GGL D G I +R C TC N T+C GH GHI+L PV + F +L+ CF
Sbjct: 51 GGLMDPRQGVI-DRTSRCQTCAGNMTECPGHFGHIDLVKPVFHIGFITKTIKILRCVCFY 109
Query: 217 CHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSI 276
C K+ + + I +I + G + +L + D
Sbjct: 110 CSKMLVSPHNPK--IKEIVVKSKGQPRK-------------------RLAYVYD------ 142
Query: 277 LAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKID 336
L G IC+ GGE++ Q + + K C YQ I
Sbjct: 143 LCKGKTICE-----GGEDMDLTKDNQQVDPNKKPGHGGCG------HYQP-------SIR 184
Query: 337 KDNLDQSLD-KSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTK 395
+ LD + + K +N+ S +E+ ++++E + K T+E F+ + P
Sbjct: 185 RTGLDLTAEWKHVNEDS------QEKKIIVSAERVWEILKHITDEECFILGMDP------ 232
Query: 396 ELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKE 455
+ D M + L VPP +RP +V+M K
Sbjct: 233 KYARPDWMIVTVLPVPPLAVRP----------------------------AVVMFGAAKN 264
Query: 456 QSDLLSEALKGIRGDTLNNKLQN------SWHELQYNVDLLMD--AKLNINKTTG---AH 504
Q DL + I+ NN+L+ + H +Q N+ +L A L N G A
Sbjct: 265 QDDLTHKLADIIKA---NNELRKNEASGAAAHVIQENIKMLQFHVATLVDNDMPGMPRAM 321
Query: 505 QIDG-----LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLT 559
Q G +K L GK G IR N+MGKRV+F+ R+VITPDP L ID +GVP A+ LT
Sbjct: 322 QKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLT 381
Query: 560 YPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
+P VTP+N+ ++++V G + YPGA I ++G + +
Sbjct: 382 FPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDL 421
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ LT+P VTP+N+ ++++V G + YPGA I
Sbjct: 353 FSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIV 412
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 413 RDNGERIDL 421
>gi|308229944|gb|ADO24379.1| RNA polymerase II large subunit, partial [Drosophila angularis]
Length = 1847
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 127/457 (27%), Positives = 193/457 (42%), Gaps = 100/457 (21%)
Query: 157 GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFL 216
GGL D G I +R C TC N T+C GH GHI+L PV + F +L+ CF
Sbjct: 32 GGLMDPRQGVI-DRTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFY 90
Query: 217 CHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSI 276
C K+ + + I +I + G + +L + D
Sbjct: 91 CSKMLVSPHNPK--IKEIVMKSKGQPRK-------------------RLAYVYD------ 123
Query: 277 LAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKID 336
L G IC+ GGE++ Q + + K C YQ I
Sbjct: 124 LCKGKTICE-----GGEDMDLTKDNQQVDPNKKPGHGGCG------HYQP-------SIR 165
Query: 337 KDNLDQSLD-KSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTK 395
+ LD + + K +N+ + +E+ ++++E + K T+E F+ + P
Sbjct: 166 RTGLDLTAEWKHVNEDT------QEKKIIVSAERVWEILKHITDEECFILGMDP------ 213
Query: 396 ELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKE 455
+ D M + L VPP +RP +V+M K
Sbjct: 214 KYARPDWMIVTVLPVPPLAVRP----------------------------AVVMFGAAKN 245
Query: 456 QSDL---LSEALKGIRGDTLNNKLQNSWHELQYNVDLLMD--AKLNINKTTG---AHQID 507
Q DL L++ +K N + H +Q N+ +L A L N G A Q
Sbjct: 246 QDDLTHKLADIIKANNELRKNEASGAAAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKS 305
Query: 508 G-----LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPV 562
G +K L GK G IR N+MGKRV+F+ R+VITPDP L ID +GVP A+ LT+P
Sbjct: 306 GKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPE 365
Query: 563 PVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
VTP+N+ ++++V G + YPGA I ++G + +
Sbjct: 366 LVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDL 402
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ LT+P VTP+N+ ++++V G + YPGA I
Sbjct: 334 FSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIV 393
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 394 RDNGERIDL 402
>gi|347831184|emb|CCD46881.1| similar to DNA-directed RNA polymerase iii largest subunit
[Botryotinia fuckeliana]
Length = 1442
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 135/510 (26%), Positives = 214/510 (41%), Gaps = 101/510 (19%)
Query: 108 IMKEKIITRQEVVPEI------LKLKYYTDQEVKQLSVVKVFSPITFN-SLGHT-IPGGL 159
+M + + +VV +I LK ++Q++ V++V + + +N G T IP G
Sbjct: 3 MMSSGMSIKAQVVDKIPKRFKELKFGIQSNQDIVNQGVIEVSNKMLYNVDAGRTAIPHGP 62
Query: 160 YDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHK 219
D +G S+ G C TC C GH GH+ LP+P + + + + ++L+ C C +
Sbjct: 63 VDPRLGTSSKSGR-CDTCDKGLQDCNGHFGHVRLPLPAFHIGYLKLIIMILQNVCKTCAR 121
Query: 220 INIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAH 279
+ + + F+ + L G +NL+
Sbjct: 122 VLLTDAERRQFLKE--LRKPGI--------------DNLKR------------------- 146
Query: 280 GTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKI----IKSFKI 335
T+IC K E+ R A +C C NA + Q RKI + K
Sbjct: 147 -TQICK----KINEQCRKA-----------SQCPHC----NATNGQIRKISPVRLAHDKY 186
Query: 336 DKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEH----LFLKCLIPVL 391
K N + K + + + E+ +E+E KK++ + H L L LI
Sbjct: 187 TKYNKSTAAKKVVPPGMAEYQKSFEEAKKHNTELEKHVKKVYEDLHPLRVLNLFKLITPS 246
Query: 392 DTTKELIATD------IMFIRSLV-VPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSL 444
D EL+ + MF+ V PP +RP + E I+ S+
Sbjct: 247 DC--ELLGINPAEGRPEMFLWQFVPAPPICIRPSVQQDGGSNEDDITTKLAEIV----SM 300
Query: 445 KSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKL-NINKTTGA 503
S++ A +K Q+ + W LQ + + +++ + + +
Sbjct: 301 ASLLRAALHKGQA---------------VQTIMEQWDFLQLQIAMYVNSDVPGLQQPGFG 345
Query: 504 HQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVP 563
I G Q L GK G R N+ GKRV+F+GR+VI+PDP L ID + VP+ AK LTYP
Sbjct: 346 KAIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLGIDEVAVPILVAKNLTYPER 405
Query: 564 VTPWNVTLLRKMVINGPNVYPGANMIQNED 593
V N+ LR+ VINGPNV+PGA I +D
Sbjct: 406 VQRQNIEKLRQCVINGPNVHPGAQQIIKKD 435
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 42/63 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP+ AK LTYP V N+ LR+ VINGPNV+PGA I
Sbjct: 373 FSGRTVISPDPNLGIDEVAVPILVAKNLTYPERVQRQNIEKLRQCVINGPNVHPGAQQII 432
Query: 74 NED 76
+D
Sbjct: 433 KKD 435
>gi|324120512|dbj|BAJ78647.1| RNA polymerase II largest subunit [Petrobiellus takunagae]
Length = 1882
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 134/488 (27%), Positives = 205/488 (42%), Gaps = 114/488 (23%)
Query: 133 EVKQLSVVKVFSPITFNSL---GHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
E++++SV + I F+ + G GGL D G I +R C TC N T+C GH G
Sbjct: 5 EIRRMSVTE--GGIRFSEIYEGGRPKLGGLMDPRQGVI-DRQSRCQTCAGNMTECPGHFG 61
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLE 249
HI+L PV + F +L+ CF C K+ + T+ I ++ + G +
Sbjct: 62 HIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPTNPK--IKEVVMKSKGQPRK----- 114
Query: 250 ETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVK 309
+L + D L G IC+ GG+EL L + +
Sbjct: 115 --------------RLAHVYD------LCKGKNICE-----GGDELD-------LGKDI- 141
Query: 310 RKCIFCATPINAISYQQRKIIKSF------KIDKDNLDQSLD-KSLNKSSNQIIRKREQG 362
P + Q +K I + LD + + K +N+ S +E+
Sbjct: 142 --------PDDPSGMQNKKQGHGGCGRYQPNIRRIALDLTAEWKHVNEDS------QEKK 187
Query: 363 YVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQ 422
V+ +E + K ++E F+ + P + D M + L VPP +RP
Sbjct: 188 IVLTAERVWEIFKHISDEECFILGMDP------KYARPDWMIVTVLPVPPLAVRP----- 236
Query: 423 MPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDL---LSEALKGIRGDTLNNKLQNS 479
+V+M + Q DL L++ +K N + +
Sbjct: 237 -----------------------AVVMYGSARNQDDLTHKLADIIKANNELLRNEQAGGA 273
Query: 480 WHELQYNVDLLM--DAKLNINKTTG---AHQIDG-----LKQMLDGKTGMIRQNMMGKRV 529
H + NV +L A L N G A Q G LK L GK G IR N+MGKRV
Sbjct: 274 AHVIAENVKMLQFHAATLVDNDMPGLPRAMQKSGRPLKALKARLKGKEGRIRGNLMGKRV 333
Query: 530 NFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 589
+F+ R+VITPDP L ID +GVP A+ LT+P VTP+N+ ++ +V G + YPGA I
Sbjct: 334 DFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQDLVRRGNSQYPGAKYI 393
Query: 590 QNEDGSVV 597
++G +
Sbjct: 394 IRDNGERI 401
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 43/67 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ LT+P VTP+N+ ++ +V G + YPGA I
Sbjct: 335 FSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQDLVRRGNSQYPGAKYII 394
Query: 74 NEDGSVV 80
++G +
Sbjct: 395 RDNGERI 401
>gi|154300910|ref|XP_001550869.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
Length = 1468
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 131/488 (26%), Positives = 205/488 (42%), Gaps = 95/488 (19%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFN-SLGHT-IPGGLYDLAMGPISERGDPCTTCGNNY 181
LK ++Q++ V++V + + +N G T IP G D +G S+ G C TC
Sbjct: 22 LKFGIQSNQDIVNQGVIEVSNKMLYNVDAGRTAIPHGPVDPRLGTSSKSGR-CDTCDKGL 80
Query: 182 TKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGY 241
C GH GH+ LP+P + + + + ++L+ C C ++ + + F+ + L G
Sbjct: 81 QDCNGHFGHVRLPLPAFHIGYLKLIIMILQNVCKTCARVLLTDAERRQFLKE--LRKPGI 138
Query: 242 VTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVA 301
+NL+ T+IC K E+ R A
Sbjct: 139 --------------DNLKR--------------------TQICK----KINEQCRKA--- 157
Query: 302 QVLSRHVKRKCIFCATPINAISYQQRKI----IKSFKIDKDNLDQSLDKSLNKSSNQIIR 357
+C C NA + Q RKI + K K N + K + + +
Sbjct: 158 --------SQCPHC----NATNGQIRKISPVRLAHDKYTKYNKSTAAKKVVPPGMAEYQK 205
Query: 358 KREQGYVMASEVEADFKKLWTNEH----LFLKCLIPVLDTTKELIATD------IMFIRS 407
E+ +E+E KK++ + H L L LI D EL+ + MF+
Sbjct: 206 SFEEAKKHNTELEKHVKKVYEDLHPLRVLNLFKLITPSDC--ELLGINPAEGRPEMFLWQ 263
Query: 408 LV-VPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKG 466
V PP +RP + E I+ S+ S++ A +K Q+
Sbjct: 264 FVPAPPICIRPSVQQDGGSNEDDITTKLAEIV----SMASLLRAALHKGQA--------- 310
Query: 467 IRGDTLNNKLQNSWHELQYNVDLLMDAKL-NINKTTGAHQIDGLKQMLDGKTGMIRQNMM 525
+ W LQ + + +++ + + + I G Q L GK G R N+
Sbjct: 311 ------VQTIMEQWDFLQLQIAMYVNSDVPGLQQPGFGKAIRGFCQRLKGKQGRFRGNLS 364
Query: 526 GKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPG 585
GKRV+F+GR+VI+PDP L ID + VP+ AK LTYP V N+ LR+ VINGPNV+PG
Sbjct: 365 GKRVDFSGRTVISPDPNLGIDEVAVPILVAKNLTYPERVQRQNIEKLRQCVINGPNVHPG 424
Query: 586 ANMIQNED 593
A I +D
Sbjct: 425 AQQIIKKD 432
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 42/63 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP+ AK LTYP V N+ LR+ VINGPNV+PGA I
Sbjct: 370 FSGRTVISPDPNLGIDEVAVPILVAKNLTYPERVQRQNIEKLRQCVINGPNVHPGAQQII 429
Query: 74 NED 76
+D
Sbjct: 430 KKD 432
>gi|324120538|dbj|BAJ78660.1| RNA polymerase II largest subunit [Euconocephalus varius]
Length = 1640
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 129/487 (26%), Positives = 205/487 (42%), Gaps = 112/487 (22%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E++++SV + + P T+ G GGL D G + +R C TC N T+C GH GH
Sbjct: 25 EIRRMSVTEGGIRFPETYEG-GRPKLGGLMDPRQG-VMDRNSRCQTCAGNQTECPGHFGH 82
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
I+L PV + F +L+ CF C K+ + T+ I ++ + G
Sbjct: 83 IDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPTNPK--IKEVVMKSKG---------- 130
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKR 310
P + + V L G IC+ GG+E+
Sbjct: 131 ----------QPRKRLTFVYD-----LCKGKNICE-----GGDEMD-------------- 156
Query: 311 KCIFCATPINAISYQQRKIIKSF------KIDKDNLDQSLD-KSLNKSSNQIIRKREQGY 363
I + + Q RK+ I + LD + + K +N+ S +E+
Sbjct: 157 --IQKENADDPNNQQPRKVGHGGCGRYQPSIRRSGLDLTAEWKHVNEDS------QEKKI 208
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQM 423
+++E + K T+E F+ + P + D M + L VPP ++RP
Sbjct: 209 ALSAERVWEILKHITDEECFILGMDP------KFARPDWMIVTVLPVPPLSVRP------ 256
Query: 424 PPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDL---LSEALKGIRGDTLNNKLQNSW 480
+V+M + Q DL L++ +K N + +
Sbjct: 257 ----------------------AVVMYGSARNQDDLTHKLADIIKANNELIRNEQAGAAA 294
Query: 481 HELQYNVDLLMD--AKLNINKTTG---AHQIDG-----LKQMLDGKTGMIRQNMMGKRVN 530
H + N+ +L A L N G A Q G +K L GK G IR N+MGKRV+
Sbjct: 295 HVISENIKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVD 354
Query: 531 FAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 590
F+ R+VITPDP L ID +GVP A+ +T+P VTP+N+ ++++V G + YPGA I
Sbjct: 355 FSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNIDKMQELVRRGNSQYPGAKYII 414
Query: 591 NEDGSVV 597
++G +
Sbjct: 415 RDNGERI 421
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 44/67 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ +T+P VTP+N+ ++++V G + YPGA I
Sbjct: 355 FSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNIDKMQELVRRGNSQYPGAKYII 414
Query: 74 NEDGSVV 80
++G +
Sbjct: 415 RDNGERI 421
>gi|308229956|gb|ADO24385.1| RNA polymerase II large subunit, partial [Drosophila phalerata]
Length = 1849
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 127/457 (27%), Positives = 192/457 (42%), Gaps = 100/457 (21%)
Query: 157 GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFL 216
GGL D G I +R C TC N T+C GH GHI+L PV + F +L+ CF
Sbjct: 32 GGLMDPRQGVI-DRTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFY 90
Query: 217 CHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSI 276
C K+ + + I +I + G + +L + D
Sbjct: 91 CSKMLVSPHNPK--IKEIVMKSKGQPRK-------------------RLAYVYD------ 123
Query: 277 LAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKID 336
L G IC+ GGE++ Q + + K C YQ I
Sbjct: 124 LCKGKTICE-----GGEDMDLTKDNQQVDPNKKPGHGGCG------HYQP-------SIR 165
Query: 337 KDNLDQSLD-KSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTK 395
+ LD + + K +N+ S +E+ ++++E + K T+E F+ + P
Sbjct: 166 RTGLDLTAEWKHVNEDS------QEKKIIVSAERVWEILKHITDEECFILGMDP------ 213
Query: 396 ELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKE 455
+ D M + L VPP +RP +V+M K
Sbjct: 214 KYARPDWMIVTVLPVPPLAVRP----------------------------AVVMFGAAKN 245
Query: 456 QSDL---LSEALKGIRGDTLNNKLQNSWHELQYNVDLLMD--AKLNINKTTG---AHQID 507
Q DL L++ +K N + H +Q N+ +L A L N G A Q
Sbjct: 246 QDDLTHKLADIIKANNELRKNEASGAAAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKS 305
Query: 508 G-----LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPV 562
G +K L GK G IR N+MGKRV+F+ R+VITPDP L ID +GVP A+ LT+P
Sbjct: 306 GKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPE 365
Query: 563 PVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
VTP+N+ ++++ G + YPGA I ++G + +
Sbjct: 366 LVTPFNIDRMQELARRGNSQYPGAKYIVRDNGERIDL 402
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ LT+P VTP+N+ ++++ G + YPGA I
Sbjct: 334 FSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELARRGNSQYPGAKYIV 393
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 394 RDNGERIDL 402
>gi|195566227|ref|XP_002105705.1| GD15986 [Drosophila simulans]
gi|194204074|gb|EDX17650.1| GD15986 [Drosophila simulans]
Length = 1150
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 130/455 (28%), Positives = 190/455 (41%), Gaps = 100/455 (21%)
Query: 157 GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFL 216
GGL D G I +R C TC N T+C GH GHI+L PV + F +L+ CF
Sbjct: 51 GGLMDPRQGVI-DRTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFY 109
Query: 217 CHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSI 276
C K+ + + I +I + G + +L + D
Sbjct: 110 CSKMLVSPHNPK--IKEIVMKSRGQPRK-------------------RLAYVYD------ 142
Query: 277 LAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKID 336
L G IC+ GGE++ Q + K C YQ I
Sbjct: 143 LCKGKTICE-----GGEDMDLTKENQQPDPNKKPGHGGCG------HYQP-------SIR 184
Query: 337 KDNLDQSLD-KSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTK 395
+ LD + + K N+ S +E+ V+++E + K T+E F+ + P
Sbjct: 185 RTGLDLTAEWKHQNEDS------QEKKIVVSAERVWEILKHITDEECFILGMDP------ 232
Query: 396 ELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKE 455
+ D M + L VPP +RP +V+M K
Sbjct: 233 KYARPDWMIVTVLPVPPLAVRP----------------------------AVVMFGAAKN 264
Query: 456 QSDL---LSEALKGIRGDTLNNKLQNSWHELQYNVDLLMD--AKLNINKTTG---AHQID 507
Q DL LS+ +K N + H +Q N+ +L A L N G A Q
Sbjct: 265 QDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKS 324
Query: 508 G-----LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPV 562
G +K L GK G IR N+MGKRV+F+ R+VITPDP L ID +GVP A+ LT+P
Sbjct: 325 GKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPE 384
Query: 563 PVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
VTP+N+ ++++V G + YPGA I ++G +
Sbjct: 385 LVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERI 419
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 44/67 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ LT+P VTP+N+ ++++V G + YPGA I
Sbjct: 353 FSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIV 412
Query: 74 NEDGSVV 80
++G +
Sbjct: 413 RDNGERI 419
>gi|403365508|gb|EJY82539.1| hypothetical protein OXYTRI_19848 [Oxytricha trifallax]
Length = 1782
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 124/473 (26%), Positives = 195/473 (41%), Gaps = 108/473 (22%)
Query: 133 EVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIE 192
EV+++SVV + + T++ G G+ D MG + ++ C TC + C GH GHIE
Sbjct: 31 EVRKMSVVNINNERTYDDRGIPNFSGINDPRMGTM-DKELRCFTCKGSQADCPGHFGHIE 89
Query: 193 LPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETL 252
L PV + ++ +L+ CF C K+ + + + LEE
Sbjct: 90 LAKPVYHAGLLEFIRKVLRCVCFYCSKL---------------------LAEKEKLEE-- 126
Query: 253 FNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKC 312
L ++ S + LA K+CD R C
Sbjct: 127 ------------LRRIKTSSAR--LARALKLCD----------------------GIRLC 150
Query: 313 IFCATPINAISYQQRKIIKS-FKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVEA 371
C ++Q K K+ KI D +D +D R R+Q ++ E
Sbjct: 151 KECG-------HKQPKFSKTGLKIQVDYMDDQIDAG---------RDRKQ-FLQPDEAHK 193
Query: 372 DFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRP-LSMEQMPPVEHSR 430
F+++ E L P + + +I I++L V P +RP +SM E
Sbjct: 194 VFERI-DEESCTLMGFQPKISRPENMI------IKNLAVAPPPVRPSVSMGNTMRSEDDL 246
Query: 431 NKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLL 490
Y IL + +L++ I N ++L ++L QY V +
Sbjct: 247 TYCYIKILQTNIALQTQIQKGANLTTINVLRDSL-------------------QYYVATV 287
Query: 491 MDAKLN---INKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDS 547
MD ++ K + ++ L GK G +R N+MGKRV+F+ R+VITPDP L +D
Sbjct: 288 MDNEIQGQPTQKHKSGKPLKAIRSRLRGKEGRLRGNLMGKRVDFSARTVITPDPILRLDQ 347
Query: 548 IGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRIS 600
+GVP + A LT P VT N+ +R +V NGP +PGA I D + +S
Sbjct: 348 LGVPQQIALNLTVPETVTAENIDEMRYLVQNGPTQWPGAKYIIRHDERQIDLS 400
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 41/70 (58%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L +D +GVP + A LT P VT N+ +R +V NGP +PGA I
Sbjct: 331 FSARTVITPDPILRLDQLGVPQQIALNLTVPETVTAENIDEMRYLVQNGPTQWPGAKYII 390
Query: 74 NEDGSVVRIS 83
D + +S
Sbjct: 391 RHDERQIDLS 400
>gi|324120526|dbj|BAJ78654.1| RNA polymerase II largest subunit [Isonychia japonica]
Length = 1530
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 130/477 (27%), Positives = 209/477 (43%), Gaps = 90/477 (18%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E++++SV + + P T+ G GGL D G + +R C TC N T+C GH GH
Sbjct: 5 EIRRMSVTEGGIRFPETYEG-GRPKLGGLMDPRQG-VMDRNSRCQTCAGNMTECPGHFGH 62
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
IEL PV + F + +L+ CF C K+ + T+ I +I + G
Sbjct: 63 IELAKPVFHVGFIKQTIKILRCVCFYCSKMLVSPTNPK--IKEIVMKTKG---------- 110
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKR 310
P + + V L G IC+ GG+E+ L++ R
Sbjct: 111 ----------QPRKRLTFVYD-----LCKGKNICE-----GGDEMD-------LAKDPDR 143
Query: 311 KCIFCATPINAISYQQRKIIKSFK--IDKDNLDQSLD-KSLNKSSNQIIRKREQGYVMAS 367
P Q ++ I + LD S + K N+ + +E+ +++
Sbjct: 144 NP---DDPGGQSKKQGHGGCGRYQPNIRRSGLDLSAEWKHANEDT------QEKKIALSA 194
Query: 368 EVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVE 427
E + K ++E F+ + P +IAT L VPP ++RP + M
Sbjct: 195 ERVYEIFKHISDEECFIMGMDPKYARPDWMIAT------VLPVPPLSVRPAVV--MYGSA 246
Query: 428 HSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTL--NNKLQNSWHELQY 485
+++ L L +I K ++L + G L N K+ LQ+
Sbjct: 247 RNQDDLTHK-------LADII-----KANNELARNEMAGAAAHVLCENTKM------LQF 288
Query: 486 NVDLLMDAKL-----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPD 540
+V L+D + + K+ + +K L GK G IR N+MGKRV+F+ R+VITPD
Sbjct: 289 HVATLVDNDMPGMPRAMQKS--GKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPD 346
Query: 541 PYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
P L+ID +GVP A+ LT+P VTP+N+ ++ +V G + YPGA I ++G +
Sbjct: 347 PNLHIDQVGVPRSIAQNLTFPEIVTPFNLEHMQDLVRRGNSQYPGAKYIVRDNGERI 403
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 44/67 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +GVP A+ LT+P VTP+N+ ++ +V G + YPGA I
Sbjct: 337 FSARTVITPDPNLHIDQVGVPRSIAQNLTFPEIVTPFNLEHMQDLVRRGNSQYPGAKYIV 396
Query: 74 NEDGSVV 80
++G +
Sbjct: 397 RDNGERI 403
>gi|158321|gb|AAA28863.1| large subunit of RNA polymerase II, partial [Drosophila
melanogaster]
Length = 471
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 128/455 (28%), Positives = 189/455 (41%), Gaps = 101/455 (22%)
Query: 157 GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFL 216
GGL D G I +R C TC N T+C GH GHI+L PV + F +L+ CF
Sbjct: 51 GGLMDPRQGVI-DRTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFY 109
Query: 217 CHKINI-PATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQS 275
C K+ + P + I +I + G + +L + D
Sbjct: 110 CSKMLVSPHNPK---IKEIVMKSRGQPRK-------------------RLAYVYD----- 142
Query: 276 ILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKI 335
L G IC+ GGE++ Q + K C YQ I
Sbjct: 143 -LCKGKTICE-----GGEDMDLTKENQQPDPNKKPGHGGCG------HYQP-------SI 183
Query: 336 DKDNLDQSLD-KSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTT 394
+ LD + + K N+ S +E+ V+++E + K T+E F+ + P
Sbjct: 184 RRTGLDLTAEWKHQNEDS------QEKKIVVSAERVWEILKHITDEECFILGMDP----- 232
Query: 395 KELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNK 454
+ D M + L VPP +RP +V+M K
Sbjct: 233 -KYARPDWMIVTVLPVPPLAVRP----------------------------AVVMFGAAK 263
Query: 455 EQSDL---LSEALKGIRGDTLNNKLQNSWHELQYNVDLLMD--AKLNINKTTG------- 502
Q DL LS+ +K N + H +Q N+ +L A L N G
Sbjct: 264 NQDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIKMLQFHVATLVDNDMPGMPGYAKV 323
Query: 503 AHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPV 562
+ +K L GK G IR N+MGKRV+F+ R+VITPDP L ID +GVP A+ LT+P
Sbjct: 324 GKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPE 383
Query: 563 PVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
VTP+N+ ++++V G + YPGA I ++G +
Sbjct: 384 LVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERI 418
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 44/67 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ LT+P VTP+N+ ++++V G + YPGA I
Sbjct: 352 FSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIV 411
Query: 74 NEDGSVV 80
++G +
Sbjct: 412 RDNGERI 418
>gi|324120542|dbj|BAJ78662.1| RNA polymerase II largest subunit [Oyamia lugubris]
Length = 1742
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 134/485 (27%), Positives = 208/485 (42%), Gaps = 107/485 (22%)
Query: 133 EVKQLSVVK---VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
E++++SV + P T+ G GGL D G + +R C TC N T+C GH G
Sbjct: 25 EIRRMSVTDGGGIRFPETYEG-GRPKIGGLMDPRQG-VMDRNSRCQTCAGNQTECPGHFG 82
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLE 249
HIEL PV + F +L+ CF C K+ L+ N K+ + ++ ++ +
Sbjct: 83 HIELGKPVFHIGFITKTIKILRCVCFYCSKM-------LVSPNNPKIREVVQKSKGQNRK 135
Query: 250 ETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEEL---RSAFVAQVLSR 306
+L + D L G IC+ GG+E+ + L +
Sbjct: 136 --------------RLAYVYD------LCKGRNICE-----GGDEMDIQKDNPDDPSLQK 170
Query: 307 HVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGYVM 365
+ K+ C YQ I + LD + + K +N+ S +E+ V+
Sbjct: 171 NQKQGHGGCG------RYQP-------SIRRSGLDLTAEWKHVNEDS------QEKKIVL 211
Query: 366 ASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPP 425
++E + K T+E +C +D + D M + L VPP ++RP
Sbjct: 212 SAERVWEILKHITDE----ECRTLGMDP--QFARPDWMIVTVLPVPPLSVRP-------- 257
Query: 426 VEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDL---LSEALKGIRGDTLNNKLQNSWHE 482
+V+M + Q DL L++ +K N + + H
Sbjct: 258 --------------------AVVMYGSARNQDDLTHKLADIIKSNNELIRNEQAGAAAHI 297
Query: 483 LQYNVDLLMD--AKLNINKTTG---AHQIDG-----LKQMLDGKTGMIRQNMMGKRVNFA 532
L NV +L A L N G A Q G +K L GK G IR N+MGKRV+F+
Sbjct: 298 LSENVKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAIKSRLKGKEGRIRGNLMGKRVDFS 357
Query: 533 GRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
R+VITPDP L ID +GVP A+ +T+P VTP+N + ++V G + YPGA I +
Sbjct: 358 ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNFDKMHELVRRGNSQYPGAKYIVRD 417
Query: 593 DGSVV 597
+G +
Sbjct: 418 NGERI 422
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 42/67 (62%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ +T+P VTP+N + ++V G + YPGA I
Sbjct: 356 FSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNFDKMHELVRRGNSQYPGAKYIV 415
Query: 74 NEDGSVV 80
++G +
Sbjct: 416 RDNGERI 422
>gi|422294084|gb|EKU21384.1| DNA-directed RNA polymerase I subunit RPA1 [Nannochloropsis
gaditana CCMP526]
Length = 1873
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 93/272 (34%), Positives = 140/272 (51%), Gaps = 20/272 (7%)
Query: 363 YVMASEVEADFKKLWTNEH-----LFLKCLI-------PVLDTTKELIATDIMFIRSLVV 410
Y+ +EV+ K LW E ++ K + P DT + +F R L V
Sbjct: 300 YMAPAEVQMHMKLLWEAEPELATLIWGKAAVEKSVFSAPGADTGRA-DGWKTLFWRVLPV 358
Query: 411 PPNNLRPLSM-EQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRG 469
P+ RP S + EH +N I+ +L I A+ KE + + +
Sbjct: 359 TPSRFRPPSKNDDGSLAEHPQNYNVIKIM----NLDERIRALLRKEDGGEGATGPENLPA 414
Query: 470 DTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQID-GLKQMLDGKTGMIRQNMMGKR 528
+ L+ L ++W +LQ V+ +D+ + N G + G++Q L+ K G+ R +MMGKR
Sbjct: 415 EALSRVL-STWIDLQNAVNGYIDSSKDANARLGGGNLTPGIRQGLEKKEGLFRMHMMGKR 473
Query: 529 VNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANM 588
VNFA RSVI+PDPY+ IG+PL FAK LTY PVTP+N LR+ V G +PGAN
Sbjct: 474 VNFACRSVISPDPYIGTSEIGLPLRFAKVLTYSQPVTPFNAAQLREAVERGAEGHPGANY 533
Query: 589 IQNEDGSVVRISSSQAVQRESLAKRLITPEGN 620
+++ G ++ + A +R +LA RL+TP G
Sbjct: 534 VEDARGRLIDLRRMDAGRRRALAARLLTPPGQ 565
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 82/148 (55%), Gaps = 3/148 (2%)
Query: 109 MKEKIITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPIS 168
M E+ + R +V ++ Y ++E+ +LSVV+V + T++ LG+ +PGGLYD AMGP+
Sbjct: 9 MTERCVVRHDVSE--VQFGVYKEEEILRLSVVRVSTAATYDRLGNPLPGGLYDPAMGPLD 66
Query: 169 ERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQL 228
R C TC + C GH+GH L + V N L F V L++ CF CH +
Sbjct: 67 AR-SICVTCNLSMRDCPGHMGHFPLSLHVYNPLTFGIVFQALRVKCFGCHGFRLSTFPCN 125
Query: 229 LFINQIKLLDAGYVTQAKDLEETLFNEE 256
+ ++ L+DAG +A L++ LF +
Sbjct: 126 VLALKLGLIDAGLAHEADSLDQALFRAD 153
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 57/90 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDPY+ IG+PL FAK LTY PVTP+N LR+ V G +PGAN ++
Sbjct: 476 FACRSVISPDPYIGTSEIGLPLRFAKVLTYSQPVTPFNAAQLREAVERGAEGHPGANYVE 535
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQ 103
+ G ++ + A +R +LA RL+TP Q
Sbjct: 536 DARGRLIDLRRMDAGRRRALAARLLTPPGQ 565
>gi|20094123|ref|NP_613970.1| DNA-directed RNA polymerase subunit A' [Methanopyrus kandleri AV19]
gi|19887124|gb|AAM01900.1| DNA-directed RNA polymerase largest subunit, the C-terminal part
[Methanopyrus kandleri AV19]
Length = 953
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/143 (45%), Positives = 88/143 (61%), Gaps = 7/143 (4%)
Query: 476 LQNSWHELQYNVDLLMDAKLN----INKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNF 531
+++ W LQY+V +D ++ TG + G+ Q L GK G RQN+ GKRVNF
Sbjct: 264 IEDQWDLLQYHVTTYIDNEIGGVPVARHRTGGKPLKGIVQRLKGKEGRFRQNLAGKRVNF 323
Query: 532 AGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQN 591
+ RSVITPDP L+ ++GVP AK LT P VT WN+ LRK+V+NGPN +PGAN +
Sbjct: 324 SARSVITPDPELDPFTLGVPEAIAKELTVPERVTEWNIDRLRKLVLNGPNKHPGANYVVK 383
Query: 592 EDGSVVRISSSQAVQRESLAKRL 614
DGS +RI+ +E LA+ L
Sbjct: 384 RDGSRIRITDE---NKEKLAEDL 403
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 60/96 (62%), Gaps = 4/96 (4%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVITPDP L+ ++GVP AK LT P VT WN+ LRK+V+NGPN +PGAN +
Sbjct: 323 FSARSVITPDPELDPFTLGVPEAIAKELTVPERVTEWNIDRLRKLVLNGPNKHPGANYVV 382
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIM 109
DGS +RI+ +E LA+ L P D R +M
Sbjct: 383 KRDGSRIRITDE---NKEKLAEDL-EPGDVVERHLM 414
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Query: 134 VKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIEL 193
++++S V+V SP T++ G+ I GG+ D MG I G C TCG +C GH GHIEL
Sbjct: 29 IRKMSKVEVTSPETYDEDGYPIEGGVMDTRMGVIDP-GLRCRTCGQPAGRCPGHFGHIEL 87
Query: 194 PVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
PV++ + ++ +L+ +C C ++ +P ++ +++
Sbjct: 88 ARPVLHPRYAERIKDVLRATCPECGRVKLPEDEIESYLREVR 129
>gi|119112579|ref|XP_317690.3| AGAP007810-PA [Anopheles gambiae str. PEST]
gi|116123421|gb|EAA12308.3| AGAP007810-PA [Anopheles gambiae str. PEST]
Length = 1878
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 128/455 (28%), Positives = 185/455 (40%), Gaps = 103/455 (22%)
Query: 158 GLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLC 217
GL D G I ER C TC N T+C GH GHI+L PV + F +L+ CF C
Sbjct: 51 GLMDPRQGVI-ERTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYC 109
Query: 218 HKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSIL 277
K+ + + Q I +I L G + +L + D L
Sbjct: 110 SKMLV--SPQNPKIKEIVLKSKGQPRK-------------------RLAYVYD------L 142
Query: 278 AHGTKICDINDYKGGEELRSAF--VAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKI 335
G KIC+ GGE++ + A + C I +R +
Sbjct: 143 CKGKKICE-----GGEDMDMSKEPTADGAKKQGHGGCGHYQPSI------RRTGLDLMAE 191
Query: 336 DKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTK 395
KD D++ +K + S+ ++ + K T+E F VL
Sbjct: 192 WKDVNDENQEKKIQVSAERVY---------------EILKHITDEECF------VLGMDP 230
Query: 396 ELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKE 455
+ D M I L VPP +RP +V+M K
Sbjct: 231 KFARPDWMIITVLPVPPLAVRP----------------------------AVVMFGATKN 262
Query: 456 QSDL---LSEALKGIRGDTLNNKLQNSWHELQYNVDLLMD--AKLNINKTTG---AHQID 507
Q DL LS+ +K N + H + N+ +L A L N G A Q
Sbjct: 263 QDDLTHKLSDIIKANNELKKNEATGAAAHVIAENIKMLQFHVATLVDNDMPGMPKAMQKS 322
Query: 508 G-----LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPV 562
G +K L GK G IR N+MGKRV+F+ R+VITPDP L ID +GVP A+ +T+P
Sbjct: 323 GKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSVAQNMTFPE 382
Query: 563 PVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
VTP+N+ ++++V G + YPGA I ++G +
Sbjct: 383 LVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERI 417
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 44/67 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ +T+P VTP+N+ ++++V G + YPGA I
Sbjct: 351 FSARTVITPDPNLRIDQVGVPRSVAQNMTFPELVTPFNIDRMQELVRRGNSQYPGAKYIV 410
Query: 74 NEDGSVV 80
++G +
Sbjct: 411 RDNGERI 417
>gi|324120540|dbj|BAJ78661.1| RNA polymerase II largest subunit [Teleogryllus emma]
Length = 1909
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 128/489 (26%), Positives = 206/489 (42%), Gaps = 111/489 (22%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E++++SV + + P T G GGL D G + +R C TC N T+C GH GH
Sbjct: 25 EIRRMSVTEGGIRFPETMEG-GRPKLGGLMDPRQG-VMDRNSRCQTCAGNQTECPGHFGH 82
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
I+L PV + F +L+ CF C K+ + T+ I +I + G
Sbjct: 83 IDLAKPVFHVGFLTKTIKILRCVCFYCSKLLVSPTNPK--IKEIVMKSKG---------- 130
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKR 310
P + + V L G IC+ GG+E+ +++
Sbjct: 131 ----------QPRKRLTFVYD-----LCKGKNICE-----GGDEM-----------DIQK 159
Query: 311 KCIFCATPINAISYQQRKIIKSF------KIDKDNLDQSLD-KSLNKSSNQIIRKREQGY 363
+ P + Q RK I + LD + + K +N+ S +E+
Sbjct: 160 E----NDPNDPNQQQSRKAGHGGCGRYQPSIRRSGLDLTAEWKHVNEDS------QEKKI 209
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQM 423
+++E + K T+E F+ + P + D M + L VPP ++RP
Sbjct: 210 SLSAERVWEILKHITDEECFILGMDP------KFARPDWMIVTVLPVPPLSVRP------ 257
Query: 424 PPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDT---LNNKLQNSW 480
+V+M + Q D+ + I+ + N + +
Sbjct: 258 ----------------------AVVMYGSARNQDDITHKTSDIIKSNNELIRNEQAGAAA 295
Query: 481 HELQYNVDLLMD--AKLNINKTTG---AHQIDG-----LKQMLDGKTGMIRQNMMGKRVN 530
H + N+ +L A L N G A Q G +K L GK G IR N+MGKRV+
Sbjct: 296 HVISENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVD 355
Query: 531 FAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 590
F+ R+VITPDP L ID +GVP A+ +T+P VTP+N+ ++++V G + YPGA I
Sbjct: 356 FSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNIDKMQELVRRGNSQYPGAKYIV 415
Query: 591 NEDGSVVRI 599
++G + +
Sbjct: 416 RDNGERIDL 424
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 45/69 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ +T+P VTP+N+ ++++V G + YPGA I
Sbjct: 356 FSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNIDKMQELVRRGNSQYPGAKYIV 415
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 416 RDNGERIDL 424
>gi|358057625|dbj|GAA96623.1| hypothetical protein E5Q_03293 [Mixia osmundae IAM 14324]
Length = 1866
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 121/218 (55%), Gaps = 1/218 (0%)
Query: 401 DIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLL 460
DI F+ + VPP+ RP++ ++H + L I+ + S ++ + ++
Sbjct: 520 DIFFMDVVAVPPSRFRPMAQMGESVLDHPQTTLLSQIIKAKESFARQAQRLRAARRGTII 579
Query: 461 SEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNIN-KTTGAHQIDGLKQMLDGKTGM 519
S K + + ++ ++Q V+ L+D+ N G G+KQ+L+ K G+
Sbjct: 580 SGESKPLNPAAVYEQVIAEIIKIQVAVNSLVDSTKNPTIMKRGMEPPTGVKQILEKKDGL 639
Query: 520 IRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVING 579
R NMMGKRVNFA RSVI+PD + + IGVP FA+ LT+P PVT N+ L++M+I G
Sbjct: 640 FRMNMMGKRVNFAARSVISPDVNIEPNEIGVPPHFARGLTFPEPVTKHNLHQLQQMIIRG 699
Query: 580 PNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
P+ +PGA+ I+ +D +V+ + A R + A++++ P
Sbjct: 700 PHEWPGAHAIERDDKTVIMLDRMSADDRLAQAQQIMAP 737
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 68/139 (48%), Gaps = 12/139 (8%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPI--SERGDP-------- 173
+ + + +V+Q+SV++V S TF + I GGLYD +GP S R P
Sbjct: 17 ISFGFLSSADVRQISVLEVSSAATFGATDEPIAGGLYDPLLGPSDGSARQRPGARSSRSS 76
Query: 174 --CTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFI 231
C +C C GH GHIELP V N LF + LL+ C C +PA +
Sbjct: 77 TLCASCQLGEMACPGHFGHIELPATVFNPLFISNAVQLLRGMCHFCGHFLMPAAVVASYT 136
Query: 232 NQIKLLDAGYVTQAKDLEE 250
+++LL G VT+A L++
Sbjct: 137 GKLELLSRGLVTEADGLDD 155
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 57/87 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PD + + IGVP FA+ LT+P PVT N+ L++M+I GP+ +PGA+ I+
Sbjct: 651 FAARSVISPDVNIEPNEIGVPPHFARGLTFPEPVTKHNLHQLQQMIIRGPHEWPGAHAIE 710
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
+D +V+ + A R + A++++ P
Sbjct: 711 RDDKTVIMLDRMSADDRLAQAQQIMAP 737
>gi|241301792|ref|XP_002407502.1| DNA-directed RNA polymerase II largest subunit, putative [Ixodes
scapularis]
gi|215497181|gb|EEC06675.1| DNA-directed RNA polymerase II largest subunit, putative [Ixodes
scapularis]
Length = 1937
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 127/449 (28%), Positives = 191/449 (42%), Gaps = 85/449 (18%)
Query: 157 GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFL 216
GGL D G I +R C TC + T+C GH GHIEL PV + F +L+ CF
Sbjct: 56 GGLMDPRQGVI-DRTSRCQTCAGSMTECPGHFGHIELAKPVFHCGFLTKTIKILRCVCFY 114
Query: 217 CHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSI 276
C K+ L+ N K+ + T+ + ++ F +
Sbjct: 115 CSKL-------LVSPNNPKIKEIVAKTRGQPRKQLSFVYD-------------------- 147
Query: 277 LAHGTKIC---DINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSF 333
L G IC D D K G E + A A H C YQ
Sbjct: 148 LCKGKNICEGGDEIDTKMGVENQGAEEAAKKQGHGG-----CG------RYQP------- 189
Query: 334 KIDKDNLDQSLD-KSLNKSSNQIIRKREQGYVMASE-VEADFKKLWTNEHLFLKCLIPVL 391
I + LD + + K +N+ S +E+ V+ +E V F+++ E C I +
Sbjct: 190 SIRRSGLDLTAEWKHVNEDS------QEKKVVLTAERVWEIFRQVSEEE-----CQILGM 238
Query: 392 DTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAM 451
D D M I L VPP +RP + M +++ L + + +I
Sbjct: 239 D--PRFTKPDWMLITVLPVPPLAVRPAVV--MFGSARNQDDLTHKLADIVKANNELIRNE 294
Query: 452 KNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAK---LNINKTTGAHQIDG 508
++ + +++E LK LQ++V L+D + L +
Sbjct: 295 QSGAAAHIIAETLK----------------MLQFHVATLVDNEMPGLPRAMQKSGRPLKS 338
Query: 509 LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWN 568
+KQ L K G IR N+MGKRV+F+ R+VITPDP L ID +GVP A+ LT+P VTP+N
Sbjct: 339 IKQRLKSKEGRIRGNLMGKRVDFSARTVITPDPNLRIDEVGVPRSIAQNLTFPEIVTPFN 398
Query: 569 VTLLRKMVINGPNVYPGANMIQNEDGSVV 597
+ + ++V G N YPGA I ++G +
Sbjct: 399 MDKMHELVRRGNNQYPGAKYIIRDNGERI 427
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 43/67 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ LT+P VTP+N+ + ++V G N YPGA I
Sbjct: 361 FSARTVITPDPNLRIDEVGVPRSIAQNLTFPEIVTPFNMDKMHELVRRGNNQYPGAKYII 420
Query: 74 NEDGSVV 80
++G +
Sbjct: 421 RDNGERI 427
>gi|84998490|ref|XP_953966.1| DNA-directed RNA polymerase I [Theileria annulata]
gi|65304964|emb|CAI73289.1| DNA-directed RNA polymerase I, putative [Theileria annulata]
Length = 1999
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 175/344 (50%), Gaps = 51/344 (14%)
Query: 316 ATPINAISYQQRKIIK-SFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVEADFK 374
+ +N+ ++++ K+I+ + K+++D + SL KSLN++ + Q + + ++ F+
Sbjct: 273 SETVNSKNFEEEKMIELTNKVNEDIISCSL-KSLNQTGKSVNTVHLQSFHLYPYLDHLFR 331
Query: 375 KLWTN--EHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRP-LSMEQMPPVEHSRN 431
+++ H+F + ++ + I F+ + V N RP L V HSR+
Sbjct: 332 -VYSRLLNHVFPQSIV---------LGHKIFFMDCMGVSANRFRPPLVTTDKQIVLHSRS 381
Query: 432 KLYQSILYSCGSLKSVIM-----AMKNKEQSDLLSEALKG----IRGDTLNNKLQNSWHE 482
I+ + +K + A N SD+ SE L G ++ TL L +
Sbjct: 382 TALLDIVMANEFVKLFLQFKYDEANYNDNGSDV-SEQLNGGNQEVKSKTLKLSLVEYLSK 440
Query: 483 LQYNVD-------------------LLMDAKLNINKTTGAHQIDG-----LKQMLDGKTG 518
+ Y +D + D LN+ K ++ +G +KQ ++ KTG
Sbjct: 441 MNYKIDEKQLEQFESYLKDYKDLNEAIRDQILNLQKKLSSYMDNGNPRPGVKQTMEHKTG 500
Query: 519 MIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVIN 578
+RQNM+GKRVN++ R+VI PD +++ + +G+PL+FA LT P VT +NV LRK+VIN
Sbjct: 501 TVRQNMLGKRVNYSARTVIAPDCFIDTNQMGMPLKFALELTVPEYVTKYNVNFLRKLVIN 560
Query: 579 GPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLIT--PEGN 620
GP VYPGA M+++ +G + +S+ +R + AK L+ EGN
Sbjct: 561 GPKVYPGAKMLRDTNGKIYNLSALSYNERVAKAKLLLVGLSEGN 604
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 58/85 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ R+VI PD +++ + +G+PL+FA LT P VT +NV LRK+VINGP VYPGA M++
Sbjct: 513 YSARTVIAPDCFIDTNQMGMPLKFALELTVPEYVTKYNVNFLRKLVINGPKVYPGAKMLR 572
Query: 74 NEDGSVVRISSSQAVQRESLAKRLI 98
+ +G + +S+ +R + AK L+
Sbjct: 573 DTNGKIYNLSALSYNERVAKAKLLL 597
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 80/190 (42%), Gaps = 32/190 (16%)
Query: 124 LKLKYYTDQEVKQLSV--VKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNY 181
L L + + E+K LS +K I S G + +YD +MG +E C+TC N
Sbjct: 15 LSLLFLSSAEIKSLSCSEIKNAGRIDHESAGKSC---IYDPSMGS-TEIYRLCSTC-NEM 69
Query: 182 TKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGY 241
T C GH+GHI +P+ + + + LLK CF C + + + F+ +
Sbjct: 70 TNCDGHLGHISFSIPLFHPMMINTLCKLLKTVCFYCGRFKFKSNTWFDFLLLFE------ 123
Query: 242 VTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVA 301
Q DLE+ + ++ L L D H +I D ++LR +
Sbjct: 124 TAQRGDLEDLIILDQILTLES-------DDH------------EIKDVNPAQQLRDKIIT 164
Query: 302 QVLSRHVKRK 311
++ R +++
Sbjct: 165 EITERFNRKR 174
>gi|324120522|dbj|BAJ78652.1| RNA polymerase II largest subunit [Mnais pruinosa pruinosa]
Length = 1557
Score = 125 bits (313), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 135/484 (27%), Positives = 202/484 (41%), Gaps = 105/484 (21%)
Query: 133 EVKQLSVVKVFSPITFNSL---GHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
E++++SV I F+ G GGL D G I +R C TC N T+C GH G
Sbjct: 26 EIRRMSVTD--GGIRFSETMEGGRPKLGGLMDPRQGVI-DRLSRCQTCAGNMTECPGHFG 82
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLE 249
HI+L PV + F +L+ CF C K+ + + I +I + G
Sbjct: 83 HIDLAKPVFHIGFITKTIKILRCVCFYCSKLLVSPNNPK--IKEIVMKSKG--------- 131
Query: 250 ETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEEL--RSAFVAQVLSRH 307
P + + V L G IC+ GG+E+ + V
Sbjct: 132 -----------QPRKRLTFVYD-----LCKGKNICE-----GGDEMDIQKDGVDDPGGGQ 170
Query: 308 VKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGYVMA 366
RK A YQ I + LD + + K +N+ S +E+ ++
Sbjct: 171 QNRK----AGHGGCGRYQP-------SIRRAGLDLTAEWKHVNEDS------QEKKIALS 213
Query: 367 SEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPV 426
+E + K T+E F+ + P + D M + L VPP ++RP
Sbjct: 214 AERVWEIFKHITDEECFIMGMDP------KYARPDWMIVTVLPVPPLSVRP--------- 258
Query: 427 EHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDL---LSEALKGIRGDTLNNKLQNSWHEL 483
+V+M + Q DL LS+ +K N + + H L
Sbjct: 259 -------------------AVVMYGSARNQDDLTHKLSDIIKSNNELLRNEQAGAAAHVL 299
Query: 484 QYNVDLLMD--AKLNINKTTG---AHQIDG-----LKQMLDGKTGMIRQNMMGKRVNFAG 533
N+ +L A L N G A Q G +K L GK G IR N+MGKRV+F+
Sbjct: 300 SENIKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSA 359
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
R+VITPDP L ID +GVP A+ LT+P VTP+N+ ++++V G + YPGA I ++
Sbjct: 360 RTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPGAKYIVRDN 419
Query: 594 GSVV 597
G +
Sbjct: 420 GERI 423
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 44/67 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ LT+P VTP+N+ ++++V G + YPGA I
Sbjct: 357 FSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPGAKYIV 416
Query: 74 NEDGSVV 80
++G +
Sbjct: 417 RDNGERI 423
>gi|324120576|dbj|BAJ78679.1| RNA polymerase II largest subunit [Inocellia japonica]
Length = 1913
Score = 125 bits (313), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 132/485 (27%), Positives = 203/485 (41%), Gaps = 106/485 (21%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E++++SV + P T G GGL D G I +R C TC N T+C GH GH
Sbjct: 26 EIRRMSVTDGGIRFPETMEG-GQPKMGGLMDPRQGVI-DRNSCCKTCTGNMTQCPGHFGH 83
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
I+L PV + F +L+ CF C K+ + ++ I +I + G
Sbjct: 84 IDLSKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSNPK--IKEIVMKSKG---------- 131
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKR 310
P + + V L G IC+ GG+E+ + +
Sbjct: 132 ----------QPRKRLAFVYD-----LCKGKHICE-----GGDEMD-------IGKEDDG 164
Query: 311 KCIFCA--TPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGYVMAS 367
+ I A T YQ I + LD + + K +N+ S +E+ +++
Sbjct: 165 RSISTAKNTHGGCGRYQP-------NIRRTGLDLTAEWKHVNEDS------QEKKIALSA 211
Query: 368 EVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVE 427
E + K T+E F+ + P + D M + L VPP ++RP
Sbjct: 212 ERVWEIFKHITDEECFILGMDP------KFARPDWMIVTVLPVPPLSVRP---------- 255
Query: 428 HSRNKLYQSILYSCGSLKSVIMAMKNKEQSDL---LSEALKGIRGDTLNNKLQNSWHELQ 484
+V+M + Q DL L++ +K N + H +
Sbjct: 256 ------------------AVVMYGSARNQDDLTHKLADIVKSNNELARNEASGAAAHVIS 297
Query: 485 YNVDLLMD--AKLNINKTTG---AHQIDG-----LKQMLDGKTGMIRQNMMGKRVNFAGR 534
N+ +L A L N G A Q G +K L GK G IR N+MGKRV+F+ R
Sbjct: 298 ENIKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAVKARLKGKEGRIRGNLMGKRVDFSAR 357
Query: 535 SVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDG 594
+VITPDP L ID +GVP A+ LT+P VTP+N+ + ++V G + YPGA I ++G
Sbjct: 358 TVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIEKMMELVQRGNSQYPGAKYIVRDNG 417
Query: 595 SVVRI 599
+ +
Sbjct: 418 ERIDL 422
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 44/69 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ LT+P VTP+N+ + ++V G + YPGA I
Sbjct: 354 FSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIEKMMELVQRGNSQYPGAKYIV 413
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 414 RDNGERIDL 422
>gi|389603516|ref|XP_001564320.2| putative DNA-directed RNA polymerase III largest subunit
[Leishmania braziliensis MHOM/BR/75/M2904]
gi|322504664|emb|CAM38379.2| putative DNA-directed RNA polymerase III largest subunit
[Leishmania braziliensis MHOM/BR/75/M2904]
Length = 1581
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 128/466 (27%), Positives = 200/466 (42%), Gaps = 85/466 (18%)
Query: 158 GLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLC 217
G+ D +GP S+R C TCG +C GH GHI L VPV + +F V + + C C
Sbjct: 54 GVNDPRLGP-SDRLSVCNTCGQCSIECTGHAGHINLEVPVFHLGYFSAVIRVCRTICKRC 112
Query: 218 HKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSIL 277
S +L + ++E L + P Q L+ + +
Sbjct: 113 --------SNVLLTRE-------------EMEYYLHRLRSTSHEPQQRAALIKAIQED-- 149
Query: 278 AHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDK 337
A+ T++C + GG L+ V+R P+ I ++ +++ + ++
Sbjct: 150 AYKTRVCLMC---GG-----------LNGTVRR-----VRPMRVI--HEKYLVELRRGEQ 188
Query: 338 DNLD-----QSLDKSLNKSSNQIIRKRE--QGYVMASEVEADFKKLWTNEHLFLKCLIPV 390
N D Q +S ++++ +E ++ V+A F+ + E + L L P
Sbjct: 189 ANEDPTAFFQEALRSAALHNSEVGSHKEFVHEFLHPQRVKALFEAIPL-EQVPLLGLQPG 247
Query: 391 LDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPV-EHSRNKLYQSILYSCGSLKSVIM 449
+ LI+T L+VPP +RP M + E Y IL
Sbjct: 248 TSPSSLLIST-------LLVPPVCVRPRGMSTTSHIREDDLTTQYNEILIC--------- 291
Query: 450 AMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKL-NINKTTGAHQIDG 508
SD++++ G + +W LQ V L+DA L +
Sbjct: 292 -------SDMMND------GTNDAARSVETWELLQTRVARLLDAALPGFPSHLRTTECKS 338
Query: 509 LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWN 568
Q + GK G R N+ GKRV+F+GRSVI+PDP L ID + VPL A+ LTYP V N
Sbjct: 339 YAQRMKGKQGRFRGNLSGKRVDFSGRSVISPDPNLRIDELAVPLRVARVLTYPQRVFAGN 398
Query: 569 VTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRL 614
+ L+R++V NGP+V+PGA + R S A RE++A RL
Sbjct: 399 IQLMRRLVRNGPHVHPGALTVYLSK-ECSRKSLRNARDREAIAARL 443
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP L ID + VPL A+ LTYP V N+ L+R++V NGP+V+PGA +
Sbjct: 361 FSGRSVISPDPNLRIDELAVPLRVARVLTYPQRVFAGNIQLMRRLVRNGPHVHPGALTVY 420
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
R S A RE++A RL
Sbjct: 421 LSK-ECSRKSLRNARDREAIAARL 443
>gi|403182441|gb|EJY57389.1| AAEL017363-PA [Aedes aegypti]
Length = 1887
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 124/455 (27%), Positives = 186/455 (40%), Gaps = 98/455 (21%)
Query: 158 GLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLC 217
GL D G I ER C TC N T+C GH GHI+L PV + F +L+ CF C
Sbjct: 50 GLMDPRQGVI-ERTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFVTKTIKILRCVCFYC 108
Query: 218 HKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSIL 277
K+ + ++ I +I + G + +L + D L
Sbjct: 109 SKMLVAPSNPK--IKEIVMKSKGQPRK-------------------RLAYVYD------L 141
Query: 278 AHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDK 337
G KIC+ GGE++ + K+ C ++ +I +K
Sbjct: 142 CKGKKICE-----GGEDMDITKDGAAPDPNKKQGHGGCGHYQPSLRRTGLDVIAEWK--- 193
Query: 338 DNLDQSLDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKEL 397
+N+ S +E+ + +E + K T+E + VL +
Sbjct: 194 ---------HVNEDS------QEKKIAVTAERVWEILKHITDEECY------VLGMDPKF 232
Query: 398 IATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQS 457
D M I L VPP +RP +V+M K Q
Sbjct: 233 ARPDWMIITVLPVPPLAVRP----------------------------AVVMFGATKNQD 264
Query: 458 DL---LSEALKGIRGDTLNNKLQNSWHELQYNVDLLMD--AKLNINKTTG---AHQIDG- 508
DL LS+ +K N + H + N+ +L A L N G A Q G
Sbjct: 265 DLTHKLSDIIKANNELKKNEATGAAAHVIAENIKMLQFHVATLVDNDMPGMPKAMQKSGK 324
Query: 509 ----LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPV 564
+K L GK G IR N+MGKRV+F+ R+VITPDP L ID +GVP A+ +T+P V
Sbjct: 325 PLKSVKSRLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSVAQNMTFPELV 384
Query: 565 TPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
TP+N+ ++++V G + YPGA I ++G + +
Sbjct: 385 TPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDL 419
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 45/69 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ +T+P VTP+N+ ++++V G + YPGA I
Sbjct: 351 FSARTVITPDPNLRIDQVGVPRSVAQNMTFPELVTPFNIDRMQELVRRGNSQYPGAKYIV 410
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 411 RDNGERIDL 419
>gi|357628227|gb|EHJ77617.1| largest subunit of the RNA polymerase II complex [Danaus plexippus]
Length = 1895
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 122/483 (25%), Positives = 197/483 (40%), Gaps = 105/483 (21%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E++++SV + + P T G GGL D G I +R C TC N T+C GH GH
Sbjct: 26 EIRRMSVTEGGIRFPETMEG-GRPKLGGLMDPRQGVI-DRSSRCQTCAGNMTECPGHFGH 83
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
I+L PV + F +L+ CF C K+ + T+ I ++ + G +
Sbjct: 84 IDLAKPVFHIGFITKTIKVLRCVCFYCSKLLVSPTNPK--IKEVVMKSKGQPRK------ 135
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKR 310
+L + D L G IC+ GGE++ + R
Sbjct: 136 -------------RLTYVYD------LCKGKNICE-----GGEDMDIGKEGEEGKRGTGH 171
Query: 311 KCIFCATPINAISYQQRKIIKSFK-IDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEV 369
C +I Q + +K ++D D+ + ++ +E
Sbjct: 172 GG--CGHYQPSIRRQGLDLTAEWKHANEDTQDKKI-------------------IITAER 210
Query: 370 EADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHS 429
+ K T+E F+ + P + D M + L VPP +RP
Sbjct: 211 VYEILKHITDEDSFILGMDP------KFARPDWMIVTVLPVPPLAVRP------------ 252
Query: 430 RNKLYQSILYSCGSLKSVIMAMKNKEQSDLL----------SEALKGIRGDTLNNKLQNS 479
+V+M K Q DL +E ++ + + L ++
Sbjct: 253 ----------------AVVMFGSAKNQDDLTHKLADIIKANNELMRNEQSGAAAHVLTDN 296
Query: 480 WHELQYNVDLLMDAKL-NINKT--TGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSV 536
LQ++V +D + + K + +K L GK G IR N+MGKRV+F+ R+V
Sbjct: 297 IRMLQFHVATFVDNDMPGMPKAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTV 356
Query: 537 ITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSV 596
ITPDP L ID +GVP A+ LT+P VTP+N+ ++++V G YPGA I ++G
Sbjct: 357 ITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNAQYPGAKYIVRDNGER 416
Query: 597 VRI 599
+ +
Sbjct: 417 IDL 419
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 44/69 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ LT+P VTP+N+ ++++V G YPGA I
Sbjct: 351 FSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNAQYPGAKYIV 410
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 411 RDNGERIDL 419
>gi|324120590|dbj|BAJ78686.1| RNA polymerase II largest subunit [Panorpa takenouchii]
Length = 1725
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 133/482 (27%), Positives = 201/482 (41%), Gaps = 105/482 (21%)
Query: 133 EVKQLSVVKVFSPITFNSL---GHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
E++++SV + + F+ G GGL D G I +R C TC N T+C GH G
Sbjct: 25 EIRRMSVTE--GGVRFSETMEGGRPKLGGLMDPRQGVI-DRNSRCQTCAGNMTECPGHFG 81
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLE 249
HI+L PV + F +L+ CF C K+ + + Q I ++ + G +
Sbjct: 82 HIDLAKPVFHIGFVTKTLKILRCVCFNCSKLLV--SPQNPKIKEVVVKSKGQPRK----- 134
Query: 250 ETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVK 309
+L + D L G KIC+ GGE++ K
Sbjct: 135 --------------RLAYVYD------LCKGKKICE-----GGEDMDMTKDGIPTDPSKK 169
Query: 310 RKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGYVMASE 368
C YQ +I + LD + + K +N+ + +E+ V+++E
Sbjct: 170 TGHGGCG------HYQP-------QIKRTGLDITAEWKHVNEDT------QEKKIVVSAE 210
Query: 369 VEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEH 428
+ K T+E F VL + D M I + VPP +RP
Sbjct: 211 RVWEILKHITDEECF------VLGMDPKFARPDWMIITVMPVPPLAVRP----------- 253
Query: 429 SRNKLYQSILYSCGSLKSVIMAMKNKEQSDL---LSEALKGIRGDTLNNKLQNSWHELQY 485
+V+M K Q DL LS+ +K N + H +
Sbjct: 254 -----------------AVVMFGAAKNQDDLTHKLSDIIKANNELKRNEAAGAAAHVITE 296
Query: 486 NVDLLMD--AKLNINKTTG---AHQIDG-----LKQMLDGKTGMIRQNMMGKRVNFAGRS 535
N+ +L A N G A Q G +K L GK G IR N+MGKRV+F+ R+
Sbjct: 297 NIKMLQFHVATFVDNDMPGMPRAMQKSGKPLKAVKSRLKGKEGRIRGNLMGKRVDFSART 356
Query: 536 VITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGS 595
VITPDP L ID +GVP A+ LT+P VTP+N+ ++++V G + YPGA I ++G
Sbjct: 357 VITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNLERMQELVRRGNSQYPGAKYIVRDNGE 416
Query: 596 VV 597
+
Sbjct: 417 RI 418
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 44/67 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ LT+P VTP+N+ ++++V G + YPGA I
Sbjct: 352 FSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNLERMQELVRRGNSQYPGAKYIV 411
Query: 74 NEDGSVV 80
++G +
Sbjct: 412 RDNGERI 418
>gi|326498629|dbj|BAK02300.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1859
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 136/497 (27%), Positives = 209/497 (42%), Gaps = 84/497 (16%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNY 181
++++ + E++Q+SVV + T G PGGL D +G I +R C TC
Sbjct: 16 QLVQFGILSPDEIRQMSVVVIEHAETMER-GKAKPGGLSDPRLGTI-DRKIKCDTCMAGM 73
Query: 182 TKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGY 241
+C GH GH+EL P+ + F + V +++ CF C KI
Sbjct: 74 AECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKI--------------------- 112
Query: 242 VTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVA 301
D EET F + +P ++ + +S KIC GG+EL
Sbjct: 113 ---LADEEETKFKQALKIRNPKHRLRRIYDACKS-----KKIC-----AGGDEL-DVQDQ 158
Query: 302 QVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQ 361
Q VK++ C I+ K++ FK K D +Q+ E+
Sbjct: 159 QDTDEPVKKRS-GCGAQQPNITVDGMKMVAEFKATKKKSDDQ---------DQLPEPVER 208
Query: 362 GYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSME 421
++++E + K ++E L L P + D M ++ L +PP +RP M
Sbjct: 209 KQILSAERVLNVLKRISDEDCLLLGLNP------KYARPDWMILQVLPIPPPPVRPSVM- 261
Query: 422 QMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWH 481
M S + L +AM + +L + G + Q
Sbjct: 262 -MDTSSRSEDDLTHQ------------LAMIIRHNENLRKQERNGAPAHIITEFAQ---- 304
Query: 482 ELQYNVDLLMDAKL----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVI 537
LQ+++ D L + +G I + L K G IR N+MGKRV+F+ R+VI
Sbjct: 305 LLQFHIATYFDNDLPGQPRATQRSG-RPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVI 363
Query: 538 TPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYP---GANMIQNEDG 594
TPDP +NID +GVP A LTYP VTP+N+ L+++V GP+ P GA I EDG
Sbjct: 364 TPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDG 423
Query: 595 S-----VVRISSSQAVQ 606
V+ SS Q ++
Sbjct: 424 QRLDLRYVKKSSDQHLE 440
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 50/84 (59%), Gaps = 8/84 (9%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYP---GAN 70
F R+VITPDP +NID +GVP A LTYP VTP+N+ L+++V GP+ P GA
Sbjct: 357 FSARTVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAK 416
Query: 71 MIQNEDGS-----VVRISSSQAVQ 89
I EDG V+ SS Q ++
Sbjct: 417 YIIREDGQRLDLRYVKKSSDQHLE 440
>gi|170291135|ref|YP_001737951.1| DNA-directed RNA polymerase subunit A [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170175215|gb|ACB08268.1| DNA-directed RNA polymerase subunit A [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 1324
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 127/510 (24%), Positives = 209/510 (40%), Gaps = 137/510 (26%)
Query: 118 EVVPEILKLKYYTDQ---------EVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPIS 168
E VPE L Y D+ + +++ +++ P ++ G + GG+ D +G I+
Sbjct: 6 EPVPEEEILPYRLDKVIFGLISPADARKIGFIEITEPTAYDEGGLPVQGGVLDPRLGTIN 65
Query: 169 ERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQL 228
R C CGN C GH G IEL +PVI+
Sbjct: 66 PR-QRCPVCGNLPKNCPGHFGRIELAMPVIHI---------------------------- 96
Query: 229 LFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQL-VQLVDSHVQSILAHGTKICDIN 287
GYV + KD+ T+ ++ L P + QL++ + + K+ D
Sbjct: 97 -----------GYVKRIKDVLNTVCHKCGKVLLPQERRSQLIERAHEYARDNPEKVVD-- 143
Query: 288 DYKGGEELRSAFVAQVLSRHVK-RKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDK 346
+EL QV K +KC C P++ + ++ + F
Sbjct: 144 -----DELVREVRDQVKVYAKKHKKCPHCGAPVHRVELEE---VYKF------------- 182
Query: 347 SLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIR 406
I+++ E + +E+ +K+ ++ L + D K ++ +
Sbjct: 183 --------IVKEPEPRRLWPNEIRDILEKISDDDSLLIG-----FDPKKARPEWAVLTV- 228
Query: 407 SLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDL---LSEA 463
L+VPP RP S+ + + + DL L E
Sbjct: 229 -LLVPPLTARP----------------------------SIYLETGERSEDDLTHILVEI 259
Query: 464 LKGIRGDTLNNK---------LQNSWHELQYNVDLLMD---AKLNINKTTGAHQ-IDGLK 510
LK R LNN +++ W LQY V + + A + + G + + L
Sbjct: 260 LKANR--KLNNSKKVGAPVSMVESEWDHLQYWVSVFFNNATAGMPVAMQKGTRRPLKSLF 317
Query: 511 QMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVT 570
Q L GK G +R+N++GKRVNF+ R+VI+PDP ++ID +GVP+E A LT P V N+
Sbjct: 318 QRLSGKEGRLRKNLIGKRVNFSARTVISPDPMIDIDEVGVPVEIAMVLTVPEYVNENNIE 377
Query: 571 LLRKMVINGPNVYPGANMIQNEDGSVVRIS 600
++++V+ GP+ YPGAN I+ G V IS
Sbjct: 378 KMKELVMRGPDEYPGANAIRK--GGVTPIS 405
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 57/98 (58%), Gaps = 2/98 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP ++ID +GVP+E A LT P V N+ ++++V+ GP+ YPGAN I+
Sbjct: 338 FSARTVISPDPMIDIDEVGVPVEIAMVLTVPEYVNENNIEKMKELVMRGPDEYPGANAIR 397
Query: 74 NEDGSVVRISSSQAVQRESL--AKRLITPEDQQHRAIM 109
+ + + Q +++L A + P D R +M
Sbjct: 398 KGGVTPISLKILQRKGKDALREAAEQLEPGDIVERHLM 435
>gi|324120568|dbj|BAJ78675.1| RNA polymerase II largest subunit [Metylophorus sp. E-43]
Length = 1792
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 125/481 (25%), Positives = 201/481 (41%), Gaps = 99/481 (20%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E++++SV + + P T+ G GGL D G + +R C TC N ++C GH GH
Sbjct: 25 EIRRMSVTEGGIKYPETYEG-GRPKIGGLMDPRQG-VMDRMSRCQTCAGNMSECPGHFGH 82
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINI-PATSQLLFINQIKLLDAGYVTQAKDLE 249
I+L PV + F +L+ CF C K+ + P+ +++ I +T++
Sbjct: 83 IDLAKPVYHVGFLTKTIKILRCVCFFCSKMLVSPSNAKIKEI----------ITKS---- 128
Query: 250 ETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVK 309
R P + + V L G IC+ GG+E+ +
Sbjct: 129 ---------RGQPRKRLTFVYD-----LCKGKNICE-----GGDEM--DITKENPDNPGG 167
Query: 310 RKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEV 369
YQ I + LD + + NQ E+ +++E
Sbjct: 168 GGKDKKPGHGGCGRYQP-------NIRRAGLDLTAEWKHTNEDNQ-----EKKISLSAER 215
Query: 370 EADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHS 429
+ K T+E +CLI +D + D M + L VPP ++RP
Sbjct: 216 VWEILKHITDE----ECLILGMD--PKFARPDWMLVTVLPVPPLSVRP------------ 257
Query: 430 RNKLYQSILYSCGSLKSVIMAMKNKEQSDL---LSEALKGIRGDTLNNKLQNSWH----- 481
+V+M + Q DL L++ +K T N + + H
Sbjct: 258 ----------------AVVMYGSARNQDDLTHKLADIIKSNNELTRNEQAGAAAHIISEN 301
Query: 482 --ELQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSV 536
LQ++V +D L + +K L GK G IR N+MGKRV+F+ R+V
Sbjct: 302 MKMLQFHVATFIDNDMPGLPRAMQKSGKPLKAVKARLKGKEGRIRGNLMGKRVDFSARTV 361
Query: 537 ITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSV 596
ITPDP L ID +GVP A+ LT+P +TP+N+ ++++V G + YPGA I ++G
Sbjct: 362 ITPDPNLRIDQVGVPRSIAQNLTFPEIITPFNIDKMQELVRRGNSQYPGAKYIIRDNGER 421
Query: 597 V 597
+
Sbjct: 422 I 422
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 44/67 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ LT+P +TP+N+ ++++V G + YPGA I
Sbjct: 356 FSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIITPFNIDKMQELVRRGNSQYPGAKYII 415
Query: 74 NEDGSVV 80
++G +
Sbjct: 416 RDNGERI 422
>gi|170062578|ref|XP_001866731.1| DNA-directed RNA polymerase II largest subunit [Culex
quinquefasciatus]
gi|167880465|gb|EDS43848.1| DNA-directed RNA polymerase II largest subunit [Culex
quinquefasciatus]
Length = 1874
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 124/455 (27%), Positives = 187/455 (41%), Gaps = 98/455 (21%)
Query: 158 GLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLC 217
GL D G I ER C TC N T+C GH GHI+L PV + F +L+ CF C
Sbjct: 50 GLMDPRQGVI-ERTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFVTKTIKILRCVCFYC 108
Query: 218 HKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSIL 277
K+ + ++ I +I + G + +L + D L
Sbjct: 109 SKMLVSPSNPK--IKEIVIKSKGQPRK-------------------RLAYVYD------L 141
Query: 278 AHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDK 337
G KIC+ GGE++ + K+ C ++ +I +K
Sbjct: 142 CKGKKICE-----GGEDMDITKDGAPPDPNKKQGHGGCGHYQPSLRRTGLDVIAEWK--- 193
Query: 338 DNLDQSLDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKEL 397
++N+ S +E+ + +E + K T+E + VL +
Sbjct: 194 ---------TVNEDS------QEKKIAVTAERVWEILKHITDEECY------VLGMDPKF 232
Query: 398 IATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQS 457
D M I L VPP +RP +V+M K Q
Sbjct: 233 ARPDWMIITVLPVPPLAVRP----------------------------AVVMFGATKNQD 264
Query: 458 DL---LSEALKGIRGDTLNNKLQNSWHELQYNVDLLMD--AKLNINKTTG---AHQIDG- 508
DL LS+ +K N + H + N+ +L A L N G A Q G
Sbjct: 265 DLTHKLSDIVKSNNELKKNEATGAAAHVIAENIKMLQFHVATLVDNDMPGMPKAMQKSGK 324
Query: 509 ----LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPV 564
+K L GK G IR N+MGKRV+F+ R+VITPDP L ID +GVP A+ +T+P V
Sbjct: 325 PLKSVKSRLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSVAQNMTFPELV 384
Query: 565 TPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
TP+N+ ++++V G + YPGA I ++G + +
Sbjct: 385 TPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDL 419
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 45/69 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ +T+P VTP+N+ ++++V G + YPGA I
Sbjct: 351 FSARTVITPDPNLRIDQVGVPRSVAQNMTFPELVTPFNIDRMQELVRRGNSQYPGAKYIV 410
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 411 RDNGERIDL 419
>gi|224087062|ref|XP_002308049.1| predicted protein [Populus trichocarpa]
gi|222854025|gb|EEE91572.1| predicted protein [Populus trichocarpa]
Length = 1168
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 112/226 (49%), Gaps = 27/226 (11%)
Query: 364 VMASEVEADFKKLWTNEHLFLKCL--IPVLDTTKELIATDIMFIRSLVVPPNNLRPLSME 421
++ SE K LW NE + I K+ + F+ +++VPP RP +
Sbjct: 291 LLPSEAMDILKLLWKNEARLCSLMSDIQQQGVGKKKAGHSMFFLNTVLVPPIKFRPPTKG 350
Query: 422 QMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWH 481
+EH + L +L GSL +D A + W
Sbjct: 351 GDSVMEHPLSVLLSKVLELNGSLADA------HRSNDFPLIARR--------------WL 390
Query: 482 ELQYNVDLLMDAKLNINKTTGAHQ-IDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPD 540
ELQ ++++L D+ N G I G+ Q+L+ K GM RQ MMGKRVN+A RSVI+PD
Sbjct: 391 ELQQSLNVLFDS----NTAKGQKDVISGICQILEKKEGMFRQKMMGKRVNYACRSVISPD 446
Query: 541 PYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGA 586
PYL+++ IG+P FA LTYP VTPWNV LR VING +PGA
Sbjct: 447 PYLDVNEIGIPPCFAVKLTYPERVTPWNVAKLRNAVINGAESHPGA 492
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 72/126 (57%), Gaps = 2/126 (1%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
+ + TD+EV + S VK+ S ++L +PGGLYD AMGP+ + +PC TCG T
Sbjct: 14 VAFSFLTDEEVHKHSFVKITSARLLDTLDKPVPGGLYDPAMGPLGD--EPCKTCGQRSTN 71
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVT 243
C GH GHI+L PV N L F + LL+ +CF C + F++Q++L+ G V
Sbjct: 72 CTGHCGHIDLISPVYNPLLFNFLHKLLQRTCFFCFHFRADSNQVEKFVSQLELIIKGDVV 131
Query: 244 QAKDLE 249
AK L+
Sbjct: 132 GAKRLD 137
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/53 (62%), Positives = 39/53 (73%)
Query: 17 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGA 69
RSVI+PDPYL+++ IG+P FA LTYP VTPWNV LR VING +PGA
Sbjct: 440 RSVISPDPYLDVNEIGIPPCFAVKLTYPERVTPWNVAKLRNAVINGAESHPGA 492
>gi|71665443|ref|XP_819691.1| DNA-directed RNA polymerase III largest subunit [Trypanosoma cruzi
strain CL Brener]
gi|70885004|gb|EAN97840.1| DNA-directed RNA polymerase III largest subunit, putative
[Trypanosoma cruzi]
Length = 1553
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 127/465 (27%), Positives = 198/465 (42%), Gaps = 83/465 (17%)
Query: 158 GLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLC 217
G+ D +G + +R C TCG C GH GHI+L PV + FF + + + C C
Sbjct: 59 GVNDPRLG-VCDRVSFCATCGLRSIDCVGHPGHIDLETPVFHLGFFTTILRICRTICKRC 117
Query: 218 HKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSIL 277
S LL L DA + L T +L P Q LV + +
Sbjct: 118 --------SHLL------LDDAEIEYYKRRLSST-------KLEPLQRAALVKTIQRE-- 154
Query: 278 AHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDK 337
A+ T++C K G L+ V+R P+ + + R + +
Sbjct: 155 AYKTRVC----LKCGG----------LNGDVRR-----VRPLRLVHEKYRVEPRRGEESV 195
Query: 338 DNLDQSLDKSLNKSS--NQIIRKREQG---YVMASEVEADFKKLWTNEHLFLKCLIPVLD 392
+ ++ D L + N+++ + ++ ++ + V F + +E L L L+P
Sbjct: 196 EGVETFFDYELRAACAYNKVVEESKENVHEFLDPARVRQMFLAVPPDEVLLLG-LLPGTS 254
Query: 393 TTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPV-EHSRNKLYQSILYSCGSLKSVIMAM 451
L+ T L+VPP ++RP + + Y IL S +L+
Sbjct: 255 PVDLLVTT-------LLVPPVSVRPRGSSGTANIRDDDLTGQYNDILISSDTLQD----- 302
Query: 452 KNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKL-NINKTTGAHQIDGLK 510
G +K +W LQ L+D+ L +
Sbjct: 303 -----------------GSIDASKYTETWEMLQMRAARLIDSALPGFPPHMRTADVKSYA 345
Query: 511 QMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVT 570
Q L GK G R N+ GKRV+F+GRSVI+PDP L++D + VPL A+ LTYP V N+
Sbjct: 346 QRLKGKHGRFRGNLSGKRVDFSGRSVISPDPNLDVDELAVPLRVARVLTYPQRVFKSNLE 405
Query: 571 LLRKMVINGPNVYPGANMIQ-NEDGSVVRISSSQAVQRESLAKRL 614
L+R++V NGPNV+PGA + ++GS + S + RESL+ RL
Sbjct: 406 LMRRLVRNGPNVHPGAVAVYLAQEGS--KKSLNHERDRESLSARL 448
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 63/102 (61%), Gaps = 4/102 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP L++D + VPL A+ LTYP V N+ L+R++V NGPNV+PGA +
Sbjct: 366 FSGRSVISPDPNLDVDELAVPLRVARVLTYPQRVFKSNLELMRRLVRNGPNVHPGAVAVY 425
Query: 74 -NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKII 114
++GS + S + RESL+ RL + D R +M ++
Sbjct: 426 LAQEGS--KKSLNHERDRESLSARL-SIGDVVERHVMNGDVV 464
>gi|407849768|gb|EKG04383.1| DNA-directed RNA polymerase III largest subunit, putative
[Trypanosoma cruzi]
Length = 1553
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 127/465 (27%), Positives = 198/465 (42%), Gaps = 83/465 (17%)
Query: 158 GLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLC 217
G+ D +G + +R C TCG C GH GHI+L PV + FF + + + C C
Sbjct: 59 GVNDPRLG-VCDRVSFCATCGLRSIDCIGHPGHIDLETPVFHLGFFTTILRICRTICKRC 117
Query: 218 HKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSIL 277
S LL L DA + L T +L P Q LV + +
Sbjct: 118 --------SHLL------LDDAEIEYYKRRLSST-------KLEPLQRAALVKTIQRE-- 154
Query: 278 AHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDK 337
A+ T++C K G L+ V+R P+ + + R + +
Sbjct: 155 AYKTRVC----LKCGG----------LNGDVRR-----VRPLRLVHEKYRVEPRRGEESV 195
Query: 338 DNLDQSLDKSLNKSS--NQIIRKREQG---YVMASEVEADFKKLWTNEHLFLKCLIPVLD 392
+ ++ D L + N+++ + ++ ++ + V F + +E L L L+P
Sbjct: 196 EGVETFFDYELRAACAYNKVVEESKENVHEFLDPARVRQMFLAVPPDEVLLLG-LLPGTS 254
Query: 393 TTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPV-EHSRNKLYQSILYSCGSLKSVIMAM 451
L+ T L+VPP ++RP + + Y IL S +L+
Sbjct: 255 PVDLLVTT-------LLVPPVSVRPRGSSGTANIRDDDLTGQYNDILISSDTLQD----- 302
Query: 452 KNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKL-NINKTTGAHQIDGLK 510
G +K +W LQ L+D+ L +
Sbjct: 303 -----------------GSIDASKYTETWEMLQMRAARLLDSALPGFPPHMRTADVKSYA 345
Query: 511 QMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVT 570
Q L GK G R N+ GKRV+F+GRSVI+PDP L++D + VPL A+ LTYP V N+
Sbjct: 346 QRLKGKHGRFRGNLSGKRVDFSGRSVISPDPNLDVDELAVPLRVARVLTYPQRVFKSNLE 405
Query: 571 LLRKMVINGPNVYPGANMIQ-NEDGSVVRISSSQAVQRESLAKRL 614
L+R++V NGPNV+PGA + ++GS + S + RESL+ RL
Sbjct: 406 LMRRLVRNGPNVHPGAVAVYLAQEGS--KKSLNHERDRESLSARL 448
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 63/102 (61%), Gaps = 4/102 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP L++D + VPL A+ LTYP V N+ L+R++V NGPNV+PGA +
Sbjct: 366 FSGRSVISPDPNLDVDELAVPLRVARVLTYPQRVFKSNLELMRRLVRNGPNVHPGAVAVY 425
Query: 74 -NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKII 114
++GS + S + RESL+ RL + D R +M ++
Sbjct: 426 LAQEGS--KKSLNHERDRESLSARL-SIGDVVERHVMNGDVV 464
>gi|449017030|dbj|BAM80432.1| RNA polymerase I largest subunit [Cyanidioschyzon merolae strain
10D]
Length = 1607
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 119/222 (53%), Gaps = 28/222 (12%)
Query: 401 DIMFIRSLVVPPNNLRPLSMEQMP----PVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQ 456
D +R L+VPP+ R S P EH++N Y +L + S+ A K +
Sbjct: 330 DTFLLRVLLVPPSRFRLPSTRDDDVNSIPREHAQNFHYTYVLKANESV-----ADARKAR 384
Query: 457 SDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGK 516
+ L L + ELQ V L+D++ T + G++Q L+ K
Sbjct: 385 NPL---------------ALGKAVAELQQAVQELVDSE----PTASMRRAPGIRQQLEHK 425
Query: 517 TGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMV 576
G+ R ++MGKRVN+A RSVI+PDP+L+++ +GVPL+FA L++P V WN+T L++ V
Sbjct: 426 EGIFRMHLMGKRVNYAARSVISPDPFLDVNEVGVPLQFAMKLSFPELVASWNLTRLQQNV 485
Query: 577 INGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPE 618
GP YPGAN+I+ DG+ ++I + + + LA+ L E
Sbjct: 486 YRGPQRYPGANIIERGDGTRIQIPAGDSKRSGVLAETLFEAE 527
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 60/89 (67%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP+L+++ +GVPL+FA L++P V WN+T L++ V GP YPGAN+I+
Sbjct: 440 YAARSVISPDPFLDVNEVGVPLQFAMKLSFPELVASWNLTRLQQNVYRGPQRYPGANIIE 499
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPED 102
DG+ ++I + + + LA+ L E+
Sbjct: 500 RGDGTRIQIPAGDSKRSGVLAETLFEAEE 528
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 68/127 (53%), Gaps = 1/127 (0%)
Query: 126 LKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCK 185
+YT +EV QLSV ++ S + F+ LG + GGLYD +G + ++ C TC + C
Sbjct: 22 FGFYTAEEVLQLSVQQIQSAVAFDDLGRPVRGGLYDPRLG-VYDKFGICATCRLGFFSCP 80
Query: 186 GHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQA 245
GH GHIEL PV+N L F + LL+ C C +P + L++ ++ L+ G
Sbjct: 81 GHCGHIELAEPVVNPLLFSLLVRLLRGVCLGCANFRLPRIREKLWLECLRHLERGTWQNF 140
Query: 246 KDLEETL 252
+ L + L
Sbjct: 141 ESLADLL 147
>gi|452983085|gb|EME82843.1| hypothetical protein MYCFIDRAFT_58269 [Pseudocercospora fijiensis
CIRAD86]
Length = 1753
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 126/476 (26%), Positives = 201/476 (42%), Gaps = 68/476 (14%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHT-IPGGLYDLAMGPISERGDPCTTCGNNYT 182
++ ++ E+K +SV + T + H GL D +G I +R C TCG +
Sbjct: 17 IQFGLFSPDEIKSMSVCHIEYAETMDEQRHRPREKGLNDPKLGTI-DRSQMCATCGESQQ 75
Query: 183 KCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYV 242
+C GH GHIEL VPV + F ++ +L+ C C K+ + S LF + L D
Sbjct: 76 ECPGHFGHIELAVPVFHVGFITKIKKILESVCHNCGKL-LEDESNPLFKRAVGLRD---- 130
Query: 243 TQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQ 302
P + + V + L CD+ D K +E
Sbjct: 131 -------------------PKRRFEAV-----TRLCKPKMTCDL-DAKNDDEQED--FGS 163
Query: 303 VLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQG 362
+ + C I +Q K+ ++K+ K+ D N +II +E
Sbjct: 164 NPKKEKRPGHGGCGNIQPTIRKEQLKLNGTWKLGKNE-----DGEDNGVEKKIITPQEVL 218
Query: 363 YVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRP-LSME 421
V E D +L N +D + + M + L VPP +RP +S++
Sbjct: 219 RVFGLISEDDLLRLGLN-----------VDYAR----PEWMVLTVLPVPPPAVRPSISVD 263
Query: 422 QMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWH 481
S + L L +I A N +++ E D + LQ +H
Sbjct: 264 GTSQGMRSEDDLTY-------KLSDIIRANSNVRRAE--QEGSPQHITDEFTSLLQ--YH 312
Query: 482 ELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDP 541
Y + + +I K+ + ++ L K G +R N+MGKRV+F+ R+VIT DP
Sbjct: 313 VATYMDNDIAGMPKSIQKS--GRPLKAIRARLKSKEGRLRGNLMGKRVDFSARTVITGDP 370
Query: 542 YLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
L++D +G P A+ LT+P VT +N+ L+++V NGPN +PGA I EDGS +
Sbjct: 371 NLDLDQVGCPRSTARILTFPERVTLYNIHKLQELVRNGPNEHPGAKHIIREDGSRI 426
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 45/67 (67%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +G P A+ LT+P VT +N+ L+++V NGPN +PGA I
Sbjct: 360 FSARTVITGDPNLDLDQVGCPRSTARILTFPERVTLYNIHKLQELVRNGPNEHPGAKHII 419
Query: 74 NEDGSVV 80
EDGS +
Sbjct: 420 REDGSRI 426
>gi|324120592|dbj|BAJ78687.1| RNA polymerase II largest subunit [Ctenocephalides felis]
Length = 1749
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 133/484 (27%), Positives = 202/484 (41%), Gaps = 105/484 (21%)
Query: 133 EVKQLSVVKVFSPITFNSL---GHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
E++++SV + I F+ G GGL D G I +R C TC N T+C GH G
Sbjct: 25 EIRRMSVTE--GGIRFSETMEGGRPKLGGLMDPRQGVI-DRNSRCQTCAGNMTECPGHFG 81
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLE 249
HI+L PV + F +L+ CF C K+ + + Q I ++ V+++K
Sbjct: 82 HIDLAKPVFHIGFVTKTLKILRCVCFYCSKMLV--SPQNPKIKEV-------VSKSKGQP 132
Query: 250 ETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVK 309
+L + D L G KIC+ GGE++ + K
Sbjct: 133 R------------KRLAYVYD------LCKGKKICE-----GGEDMDLTKEGAPADPNKK 169
Query: 310 RKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGYVMASE 368
C YQ + + LD + + K +N S +E+ +++E
Sbjct: 170 AGHGGCG------HYQP-------SLRRTGLDITAEWKHVNDES------QEKKIFVSAE 210
Query: 369 VEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEH 428
+ K T+E F VL + D M I + VPP +RP
Sbjct: 211 RVWEILKHITDEECF------VLGMDPKFARPDWMIITVMPVPPLAVRP----------- 253
Query: 429 SRNKLYQSILYSCGSLKSVIMAMKNKEQSDL---LSEALKGIRGDTLNNKLQNSWHELQY 485
+V+M K Q DL LS+ +K N + H +
Sbjct: 254 -----------------AVVMFGAAKNQDDLTHKLSDIIKANNELMRNEASGAAAHVITE 296
Query: 486 NVDLLMD--AKLNINKTTG---AHQIDG-----LKQMLDGKTGMIRQNMMGKRVNFAGRS 535
N+ +L A N G A Q G +K L GK G IR N+MGKRV+F+ R+
Sbjct: 297 NIKMLQFHVATFVDNDMPGMPRAMQKSGKPLKAVKARLKGKEGRIRGNLMGKRVDFSART 356
Query: 536 VITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGS 595
VITPDP L ID +GVP A+ +T+P VTP+N+ ++++V G + YPGA I ++G
Sbjct: 357 VITPDPNLRIDQVGVPRSIAQNMTFPELVTPFNIERMQELVRRGNSQYPGAKYIVRDNGE 416
Query: 596 VVRI 599
+ +
Sbjct: 417 RIDL 420
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 45/69 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ +T+P VTP+N+ ++++V G + YPGA I
Sbjct: 352 FSARTVITPDPNLRIDQVGVPRSIAQNMTFPELVTPFNIERMQELVRRGNSQYPGAKYIV 411
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 412 RDNGERIDL 420
>gi|324120550|dbj|BAJ78666.1| RNA polymerase II largest subunit [Tenodera aridifolia]
Length = 1844
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 129/488 (26%), Positives = 201/488 (41%), Gaps = 114/488 (23%)
Query: 133 EVKQLSVVKVFSPITFNSL---GHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
E++++SV + I F+ G GGL D G + +R C TC N T+C GH G
Sbjct: 25 EIRRMSVTE--GGIRFSETYEGGRPKLGGLMDPRQG-VMDRNSRCQTCAGNMTECPGHFG 81
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLE 249
HI+L PV + F +L+ CF C K+ + T+ I ++ + G
Sbjct: 82 HIDLAKPVFHIGFITKTIKILRCVCFYCSKLLVSPTNPK--IKEVVMKSKG--------- 130
Query: 250 ETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVK 309
P + + V L G IC+ GG+E+
Sbjct: 131 -----------QPRKRLTFVYD-----LCKGKNICE-----GGDEMD------------- 156
Query: 310 RKCIFCATPINAISYQQRKIIKSF------KIDKDNLDQSLD-KSLNKSSNQIIRKREQG 362
I P + Q RK I + LD + + K +N+ S +E+
Sbjct: 157 ---IMKENPDDPNQQQPRKAGHGGCGRYQPNIRRAGLDLTAEWKHVNEDS------QEKK 207
Query: 363 YVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQ 422
+++E + K T+E ++ + P + D M + L VPP +RP
Sbjct: 208 IALSAERVWEILKHITDEECYILGMDP------KFARPDWMIVTVLPVPPLAVRP----- 256
Query: 423 MPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDL---LSEALKGIRGDTLNNKLQNS 479
+V+M + Q DL L++ +K N + +
Sbjct: 257 -----------------------AVVMYGSARNQDDLTHKLADIIKANNELMRNEQAGAA 293
Query: 480 WHELQYNVDLLMD--AKLNINKTTG---AHQIDG-----LKQMLDGKTGMIRQNMMGKRV 529
H + N+ +L A L N G A Q G +K L GK G IR N+MGKRV
Sbjct: 294 AHVILENIKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRV 353
Query: 530 NFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 589
+F+ R+VITPDP L ID +GVP A+ +T+P VTP+N+ + ++V G + YPGA I
Sbjct: 354 DFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNIDKMYELVRRGNSQYPGAKYI 413
Query: 590 QNEDGSVV 597
++G +
Sbjct: 414 VRDNGERI 421
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ +T+P VTP+N+ + ++V G + YPGA I
Sbjct: 355 FSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNIDKMYELVRRGNSQYPGAKYIV 414
Query: 74 NEDGSVV 80
++G +
Sbjct: 415 RDNGERI 421
>gi|294942134|ref|XP_002783393.1| DNA-directed RNA polymerase I largest subunit, putative [Perkinsus
marinus ATCC 50983]
gi|239895848|gb|EER15189.1| DNA-directed RNA polymerase I largest subunit, putative [Perkinsus
marinus ATCC 50983]
Length = 1549
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/288 (32%), Positives = 141/288 (48%), Gaps = 31/288 (10%)
Query: 353 NQIIRK----REQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSL 408
N+I RK + +V + V KLW E L+ L P E DI F++++
Sbjct: 81 NKIFRKLRGKAAEKFVTPTYVRNLLHKLWREERQVLEFLFPASVGRGE----DIFFMQNI 136
Query: 409 VVPPNNLRPLSMEQ--------MPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLL 460
VVPPN LRPL +P + +S L L++ A++N + +
Sbjct: 137 VVPPNKLRPLRFGGDSDDNQGFLPASTVCLKNILESNLLLRQLLETDQEALENPNEREKA 196
Query: 461 SEALKGIRGDT------LNNK--------LQNSWHELQYNVDLLMDAKLNINKTTGAHQI 506
+AL + D ++N L + +LQ NV+ +D+ + K
Sbjct: 197 GDALPNLISDEDETMKPVDNTPQRGPMTTLGTALIDLQNNVNNYLDSAKS-GKAQNKVVA 255
Query: 507 DGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTP 566
G++Q+L+ K G+ R MMGKRVN+A RSVI+PD L + IG+P+ A LT P PV
Sbjct: 256 FGVRQLLERKQGLFRMKMMGKRVNYAARSVISPDVSLETNQIGLPMFAALQLTVPEPVNS 315
Query: 567 WNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRL 614
+NV LR +V NGP+ YPGA + DG +V + Q QR+++A+ L
Sbjct: 316 FNVDYLRALVENGPDKYPGAAAVVFPDGKLVSLKGRQPHQRKAIARSL 363
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 59/99 (59%), Gaps = 2/99 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PD L + IG+P+ A LT P PV +NV LR +V NGP+ YPGA +
Sbjct: 280 YAARSVISPDVSLETNQIGLPMFAALQLTVPEPVNSFNVDYLRALVENGPDKYPGAAAVV 339
Query: 74 NEDGSVVRISSSQAVQRESLAKRLI--TPEDQQHRAIMK 110
DG +V + Q QR+++A+ L T D++ R +++
Sbjct: 340 FPDGKLVSLKGRQPHQRKAIARSLYQSTNPDKKPRVVLR 378
>gi|119872216|ref|YP_930223.1| DNA-directed RNA polymerase subunit A' [Pyrobaculum islandicum DSM
4184]
gi|119673624|gb|ABL87880.1| DNA-directed RNA polymerase, subunit A' [Pyrobaculum islandicum DSM
4184]
Length = 884
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 93/159 (58%), Gaps = 6/159 (3%)
Query: 460 LSEALK-GIRGDTLNNKLQNSWHELQYNVDLLMDAKLN---INKTTGAHQIDGLKQMLDG 515
++E LK I N + N W LQY++ D +L + K G + G+ Q L G
Sbjct: 255 MNEKLKIAIETGAPTNVVDNLWDLLQYHIATYFDNELPGIPVAKHRGGRPLKGIAQRLKG 314
Query: 516 KTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKM 575
K G R ++ GKRVNF+ R+VI+PDP+++I+ +GVP + AK LT P VTPWNV +LR+
Sbjct: 315 KEGRFRGSLSGKRVNFSARTVISPDPHISINEVGVPYDVAKILTVPERVTPWNVDILREY 374
Query: 576 VINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRL 614
VI GP +PGAN + +G RI R +LA+RL
Sbjct: 375 VIRGPETWPGANYVVTPEGR--RIDLRYVKDRRALAERL 411
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 55/84 (65%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP+++I+ +GVP + AK LT P VTPWNV +LR+ VI GP +PGAN +
Sbjct: 330 FSARTVISPDPHISINEVGVPYDVAKILTVPERVTPWNVDILREYVIRGPETWPGANYVV 389
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+G RI R +LA+RL
Sbjct: 390 TPEGR--RIDLRYVKDRRALAERL 411
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 78/152 (51%), Gaps = 1/152 (0%)
Query: 109 MKEKIITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPIS 168
++E++ T V + +K + + +++ SV++V + ++ G + GG+ D +G ++
Sbjct: 3 LREELDTIPRKVIKSIKFGILSPEMIRKYSVMEVTTSEVYDEGGLPVRGGVADRRLG-VA 61
Query: 169 ERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQL 228
E G C TCG + C GH GHIEL PVI+ F R + +L+ +C C +I +
Sbjct: 62 EPGARCETCGQTHDVCPGHFGHIELVKPVIHVGFARIIYDILRTTCPNCGRIMLKDEEIQ 121
Query: 229 LFINQIKLLDAGYVTQAKDLEETLFNEENLRL 260
+ ++ L + A +L E + + + R+
Sbjct: 122 RYRERLTKLKGKWRLLALNLHEKIRKKASERM 153
>gi|294911649|ref|XP_002778030.1| DNA-directed RNA polymerase I largest subunit, putative [Perkinsus
marinus ATCC 50983]
gi|239886151|gb|EER09825.1| DNA-directed RNA polymerase I largest subunit, putative [Perkinsus
marinus ATCC 50983]
Length = 1774
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 92/288 (31%), Positives = 141/288 (48%), Gaps = 27/288 (9%)
Query: 349 NKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSL 408
NK ++ K + +V + V KLW E L+ L P E DI F++++
Sbjct: 269 NKIFRKLRGKAAEKFVTPTYVRNLLHKLWREERQVLEFLFPASVGRGE----DIFFMQNI 324
Query: 409 VVPPNNLRPLSMEQ--------MPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLL 460
VVPPN LRPL +P + +S L L++ A++N + +
Sbjct: 325 VVPPNKLRPLRFGGDSDDNQGFLPASTVCLKNILESNLLLKQLLETDQEAVENPNEREKA 384
Query: 461 SEALKGIRGDT------LNNK--------LQNSWHELQYNVDLLMDAKLNINKTTGAHQI 506
+AL + D ++N L + +LQ NV+ +D+ + K
Sbjct: 385 GDALPNLISDEDETMKPVDNTPQRGPMTTLGTALIDLQNNVNNYLDSAKS-GKAQNKVVA 443
Query: 507 DGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTP 566
G++Q+L+ K G+ R MMGKRVN+A RSVI+PD L + IG+P+ A LT P PV
Sbjct: 444 FGVRQLLERKQGLFRMKMMGKRVNYAARSVISPDVSLETNQIGLPMFAALQLTVPEPVNS 503
Query: 567 WNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRL 614
+NV LR +V NGP+ YPGA + DG +V + Q QR+++A+ L
Sbjct: 504 FNVDYLRALVENGPDKYPGAAAVVFPDGKLVSLKGRQPHQRKAIARSL 551
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 66/126 (52%), Gaps = 2/126 (1%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSL-GHTIPGGLYDLAMGPISERGDPCTTCGNNYT 182
++ Y + +E++ +SV ++ F +L G +P GLYD A+GP+ GD C TCG
Sbjct: 18 VQFMYMSPKEIQDISVKEITEVAAFGNLAGAPLPDGLYDPALGPL-HIGDLCKTCGLGVH 76
Query: 183 KCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYV 242
C GH+GHI+L V N R + +L+ C C+ + + ++ KL+ AG
Sbjct: 77 DCPGHLGHIKLATDVYNPFLIRTLYNVLRRMCTSCNHFRVREAVTQRYCDRFKLILAGLE 136
Query: 243 TQAKDL 248
++ D+
Sbjct: 137 PESHDV 142
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 59/99 (59%), Gaps = 2/99 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PD L + IG+P+ A LT P PV +NV LR +V NGP+ YPGA +
Sbjct: 468 YAARSVISPDVSLETNQIGLPMFAALQLTVPEPVNSFNVDYLRALVENGPDKYPGAAAVV 527
Query: 74 NEDGSVVRISSSQAVQRESLAKRLI--TPEDQQHRAIMK 110
DG +V + Q QR+++A+ L T D++ R +++
Sbjct: 528 FPDGKLVSLKGRQPHQRKAIARSLYQSTNPDKKPRVVLR 566
>gi|407410320|gb|EKF32797.1| DNA-directed RNA polymerase III largest subunit, putative
[Trypanosoma cruzi marinkellei]
Length = 1629
Score = 122 bits (306), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 127/465 (27%), Positives = 197/465 (42%), Gaps = 83/465 (17%)
Query: 158 GLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLC 217
G+ D +G + +R C TCG C GH GHI+L PV + FF + + + C C
Sbjct: 134 GVNDPRLG-VCDRVSVCATCGLRSIDCVGHPGHIDLETPVFHLGFFSTILRICRTICKRC 192
Query: 218 HKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSIL 277
S LL L DA + L T +L P Q LV + +
Sbjct: 193 --------SHLL------LDDAEIEYYKRRLSST-------KLDPLQRAALVKTIQKE-- 229
Query: 278 AHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDK 337
A+ T++C K G L+ V+R P+ + + R + +
Sbjct: 230 AYKTRVC----LKCGG----------LNGDVRR-----VRPLRLVHEKYRVEPRRGEESV 270
Query: 338 DNLDQSLDKSLNKSS--NQIIRKREQG---YVMASEVEADFKKLWTNEHLFLKCLIPVLD 392
+ ++ D L + N+++ + ++ ++ + V F + +E L L L P
Sbjct: 271 EGIETFFDYELRTACAYNKVVEESKENVHEFLDPARVRQLFLAVPPDEVLLLG-LQPGTS 329
Query: 393 TTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPV-EHSRNKLYQSILYSCGSLKSVIMAM 451
L+ T L+VPP ++RP + + Y IL S +L+
Sbjct: 330 PVDLLVTT-------LLVPPVSVRPRGSSGTANIRDDDLTGQYNDILISSDTLQD----- 377
Query: 452 KNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKL-NINKTTGAHQIDGLK 510
G +K +W LQ L+D+ L +
Sbjct: 378 -----------------GSIDASKYTETWEMLQMRAARLLDSALPGFPPHMRTADVKSYA 420
Query: 511 QMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVT 570
Q L GK G R N+ GKRV+F+GRSVI+PDP L++D + VPL A+ LTYP V N+
Sbjct: 421 QRLKGKHGRFRGNLSGKRVDFSGRSVISPDPNLDVDELAVPLRVARVLTYPQRVFKSNLE 480
Query: 571 LLRKMVINGPNVYPGANMIQ-NEDGSVVRISSSQAVQRESLAKRL 614
L+R++V NGPNV+PGA + ++GS + S + RESL+ RL
Sbjct: 481 LMRRLVRNGPNVHPGAVAVYLAQEGS--KKSLNHERDRESLSARL 523
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 63/102 (61%), Gaps = 4/102 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP L++D + VPL A+ LTYP V N+ L+R++V NGPNV+PGA +
Sbjct: 441 FSGRSVISPDPNLDVDELAVPLRVARVLTYPQRVFKSNLELMRRLVRNGPNVHPGAVAVY 500
Query: 74 -NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKII 114
++GS + S + RESL+ RL + D R +M ++
Sbjct: 501 LAQEGS--KKSLNHERDRESLSARL-SVGDVVERHVMNGDVV 539
>gi|71033377|ref|XP_766330.1| RNA polymerase large subunit [Theileria parva strain Muguga]
gi|68353287|gb|EAN34047.1| RNA polymerase large subunit, putative [Theileria parva]
Length = 1996
Score = 122 bits (306), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 98/326 (30%), Positives = 160/326 (49%), Gaps = 50/326 (15%)
Query: 334 KIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDT 393
K+ +D SL KSLN++ + Q + + ++ F+K E FL L P
Sbjct: 289 KVSEDITSSSL-KSLNQTGKSVNMVHLQSFHLLPYLDELFRK----ESEFLNHLFP---- 339
Query: 394 TKELIATDIMFIRSLVVPPNNLRP-LSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMK 452
L I F+ + V N RP L V HSR+ I+ + +K ++
Sbjct: 340 QSRLHGYKIFFMDCMGVSANRFRPPLVTADKQIVLHSRSTALLDIVMTNEFVKLLLQFKY 399
Query: 453 NKEQS---DLLSEALKGIRGDTLNNKLQ---------NSWHELQYNVD------------ 488
E++ D S+A + + G +NN+++ ++ Y +D
Sbjct: 400 YSEETNSNDSASDASEQLNG--VNNEVKPKAGKLSLVEYLSKMNYKIDEKQLEQFDNYLK 457
Query: 489 -------LLMDAKLNINKTTGAHQIDG-----LKQMLDGKTGMIRQNMMGKRVNFAGRSV 536
+ D LN+ K ++ +G +KQ ++ KTG +RQNM+GKRVN++ R+V
Sbjct: 458 DYKDLNEAIRDQILNLQKKLSSYMDNGNPRPGIKQTMEHKTGTVRQNMLGKRVNYSARTV 517
Query: 537 ITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSV 596
I PD +++ + +G+PL+FA LT P VT +NV LRK+VINGP VYPGA M+++ +G +
Sbjct: 518 IAPDCFIDTNQMGMPLKFALELTVPEYVTKYNVNFLRKLVINGPKVYPGAKMLRDTNGKI 577
Query: 597 VRISSSQAVQRESLAKRLIT--PEGN 620
+S+ +R + AK L+ EGN
Sbjct: 578 YNLSALTYNERVAKAKLLLVGLSEGN 603
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 58/85 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ R+VI PD +++ + +G+PL+FA LT P VT +NV LRK+VINGP VYPGA M++
Sbjct: 512 YSARTVIAPDCFIDTNQMGMPLKFALELTVPEYVTKYNVNFLRKLVINGPKVYPGAKMLR 571
Query: 74 NEDGSVVRISSSQAVQRESLAKRLI 98
+ +G + +S+ +R + AK L+
Sbjct: 572 DTNGKIYNLSALTYNERVAKAKLLL 596
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
Query: 124 LKLKYYTDQEVKQLSV--VKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNY 181
L + + E+K LS +K I S G + +YD +MG +E C+TC N
Sbjct: 15 LSFSFLSSAEIKSLSCSEIKNAGRIDHESAGKSC---IYDPSMGS-TEIYRLCSTC-NEM 69
Query: 182 TKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINI 222
T C GH+GHI +P+ + + + LLK CF C + +
Sbjct: 70 TNCDGHLGHINFAIPLFHPMMINSLCKLLKAVCFYCGNLRL 110
>gi|324120528|dbj|BAJ78655.1| RNA polymerase II largest subunit [Phraortes illepidus]
Length = 1563
Score = 122 bits (305), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 129/482 (26%), Positives = 201/482 (41%), Gaps = 104/482 (21%)
Query: 133 EVKQLSVVKVFSPITFNSL---GHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
E++++SV + I F+ G GGL D G I +R C TC N T+C GH G
Sbjct: 5 EIRRMSVTE--GGIRFSETMEGGRPKLGGLMDPRQGVI-DRNSRCQTCAGNQTECAGHFG 61
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLE 249
HI L PV + F +L+ CF C K+ + T+ I ++ + G
Sbjct: 62 HINLAKPVFHVGFLTKTIKILRCVCFYCSKLLVSPTNPK--IKEVVMKSKG--------- 110
Query: 250 ETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVK 309
P + + V L G IC+ GG+E+ S+ +
Sbjct: 111 -----------QPRKRLTFVYD-----LCKGKNICE-----GGDEMDIQKEDDPNSQQPR 149
Query: 310 RKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGYVMASE 368
+ A YQ I + LD + + K +N+ S +E+ +++E
Sbjct: 150 K-----AGHGGCGRYQP-------SIRRAGLDLTAEWKHVNEDS------QEKKISLSAE 191
Query: 369 VEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEH 428
+ + T+E F+ + P + D M + L VPP +RP
Sbjct: 192 RVWEILRHITDEECFILGMDP------KFARPDWMIVTVLPVPPLCVRP----------- 234
Query: 429 SRNKLYQSILYSCGSLKSVIMAMKNKEQSDL---LSEALKGIRGDTLNNKLQNSWHELQY 485
+V+M + Q DL L++ +K N + + H +
Sbjct: 235 -----------------AVVMYGSARNQDDLTHKLADIIKSNNELVRNEQAGAAAHVVAD 277
Query: 486 NVDLLMD--AKLNINKTTG---AHQIDG-----LKQMLDGKTGMIRQNMMGKRVNFAGRS 535
N+ +L A L N G A Q G +K L GK G IR N+MGKRV+F+ R+
Sbjct: 278 NIKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 337
Query: 536 VITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGS 595
VITPDP L ID +GVP A+ +T+P VTP+N+ ++ +V G + YPGA I ++G
Sbjct: 338 VITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNIDKMQDLVRRGNSQYPGAKYIVRDNGE 397
Query: 596 VV 597
+
Sbjct: 398 RI 399
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ +T+P VTP+N+ ++ +V G + YPGA I
Sbjct: 333 FSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNIDKMQDLVRRGNSQYPGAKYIV 392
Query: 74 NEDGSVV 80
++G +
Sbjct: 393 RDNGERI 399
>gi|324120544|dbj|BAJ78663.1| RNA polymerase II largest subunit [Euborellia plebeja]
Length = 1812
Score = 122 bits (305), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 124/457 (27%), Positives = 191/457 (41%), Gaps = 98/457 (21%)
Query: 157 GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFL 216
GGL D G + +R C TC N +C GH GHI+L PV + + +L+ CF
Sbjct: 50 GGLMDPRQG-VMDRSTRCQTCAGNQVECPGHFGHIDLAKPVFHIGYLVKAIKILRCVCFY 108
Query: 217 CHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSI 276
C K+ + T+ I ++ + G + +LV + D
Sbjct: 109 CSKLLVSPTNPK--IKEVVMKTKGQPRK-------------------RLVYVYD------ 141
Query: 277 LAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKID 336
L G IC+ GG+E+ Q +K YQ I
Sbjct: 142 LCKGKNICE-----GGDEMDIPKEGQDDPNGQGKKVGHGGCG----RYQP-------NIR 185
Query: 337 KDNLDQSLD-KSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTK 395
+ LD + + K +N+ S +E+ V+ ++ + K T+E F+ + P
Sbjct: 186 RSGLDLTAEWKHVNEDS------QEKKIVLTAQRVWEIFKHITDEECFILGMDP------ 233
Query: 396 ELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKE 455
+ D M + L VPP +RP +V+M +
Sbjct: 234 KFARPDWMILTVLPVPPLAVRP----------------------------AVVMYGSARN 265
Query: 456 QSDL---LSEALKGIRGDTLNNKLQNSWHELQYNVDLLMD--AKLNINKTTG---AHQID 507
Q DL L++ +K N + + H L N+ LL A L N G A Q
Sbjct: 266 QDDLTHKLADIIKANNELVHNEQAGAAAHVLAENIKLLQFHVATLIDNDMPGLPRAMQKS 325
Query: 508 G-----LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPV 562
G +K L GK G IR N+MGKRV+F+ R+VITPDP L ID +GVP A+ +T+P
Sbjct: 326 GKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPE 385
Query: 563 PVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
VTP+N+ ++++V G + YPGA I ++G + +
Sbjct: 386 IVTPFNLEKMQELVQRGNSQYPGAKYIVRDNGDRIDL 422
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 45/69 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ +T+P VTP+N+ ++++V G + YPGA I
Sbjct: 354 FSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNLEKMQELVQRGNSQYPGAKYIV 413
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 414 RDNGDRIDL 422
>gi|427777531|gb|JAA54217.1| Putative rna polymerase i large subunit [Rhipicephalus pulchellus]
Length = 1941
Score = 122 bits (305), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 136/512 (26%), Positives = 215/512 (41%), Gaps = 112/512 (21%)
Query: 112 KIITRQEVVP--EILKLKY--YTDQEVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMG 165
+I+T P E+ ++++ + E++++SV + + P + G GGL D G
Sbjct: 3 QIVTSDSKAPLREVKRVQFGILSPDEIRRMSVTEGGIKYPEIYEG-GRPKLGGLMDPRQG 61
Query: 166 PISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPAT 225
I +R C TC N T+C GH GHI+L PV + F +L+ CF C K+
Sbjct: 62 VI-DRTSRCQTCAGNMTECPGHFGHIDLAKPVFHCGFLTKTIKILRCVCFYCSKL----- 115
Query: 226 SQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKIC- 284
L N N ++ ++V + LAH +C
Sbjct: 116 --------------------------LVNPNNPKIK--EIVGKTKGQPRKRLAHVYDLCK 147
Query: 285 DINDYKGGEELRSAFV--AQVLSRHVKRKC-IFCATPINAISYQQRKIIKSFKIDKDNLD 341
N +GG+E+ + +QV K++ C YQ I + LD
Sbjct: 148 GKNICEGGDEIDTKLGPDSQVQEDTNKKQGHGGCG------RYQP-------SIRRSGLD 194
Query: 342 QSLD-KSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIAT 400
+ + K +N+ S +E+ + +E + K + E +C+I +D
Sbjct: 195 LTAEWKHINEDS------QEKKIALTAERVWEILKHVSEE----ECMILGMD--PRYAKP 242
Query: 401 DIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDL- 459
D M + L VPP +RP +V+M + Q DL
Sbjct: 243 DWMLVTVLPVPPLAVRP----------------------------AVVMFGSARNQDDLT 274
Query: 460 --LSEALKGIRGDTLNNKLQNSWHELQYNVDLLMD--AKLNINKTTG---AHQIDG---- 508
L++ +K N + H + N+ +L A L N+ G A Q G
Sbjct: 275 HKLADIVKANNELLRNEASGAAAHIIAENIKMLQFHVATLVDNEMPGLPRAMQKSGRPLK 334
Query: 509 -LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPW 567
+KQ L K G IR N+MGKRV+F+ R+VITPDP L I+ +GVP A+ LT+P VTP+
Sbjct: 335 SIKQRLKSKEGRIRGNLMGKRVDFSARTVITPDPNLRINEVGVPRSIAQNLTFPEIVTPF 394
Query: 568 NVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
N+ + +V G N YPGA I ++G + +
Sbjct: 395 NIDKMHDLVRRGNNQYPGAKYIIRDNGERIDL 426
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 43/69 (62%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L I+ +GVP A+ LT+P VTP+N+ + +V G N YPGA I
Sbjct: 358 FSARTVITPDPNLRINEVGVPRSIAQNLTFPEIVTPFNIDKMHDLVRRGNNQYPGAKYII 417
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 418 RDNGERIDL 426
>gi|294935326|ref|XP_002781387.1| DNA-directed RNA polymerase I largest subunit, putative [Perkinsus
marinus ATCC 50983]
gi|239891968|gb|EER13182.1| DNA-directed RNA polymerase I largest subunit, putative [Perkinsus
marinus ATCC 50983]
Length = 1662
Score = 122 bits (305), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 92/288 (31%), Positives = 140/288 (48%), Gaps = 27/288 (9%)
Query: 349 NKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSL 408
NK ++ K + +V + V KLW E L+ L P E DI F++++
Sbjct: 150 NKIFRKLRGKAAEKFVTPTYVRNLLHKLWCEEREILEFLFPASVGRGE----DIFFMQNI 205
Query: 409 VVPPNNLRPLSMEQ--------MPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLL 460
VVPPN LRPL +P + +S L L++ A++N +
Sbjct: 206 VVPPNKLRPLRFGGDSDDNQGFLPASTVCLKNILESNLLLKQLLETDQEAVENPNDREKA 265
Query: 461 SEALKGIRGDT------LNNK--------LQNSWHELQYNVDLLMDAKLNINKTTGAHQI 506
+AL + D ++N L + +LQ NV+ +D+ + K
Sbjct: 266 GDALPNLISDEDETMKPVDNTPQRGPMTTLGTALIDLQNNVNNYLDSAKS-GKAQNKVVA 324
Query: 507 DGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTP 566
G++Q+L+ K G+ R MMGKRVN+A RSVI+PD L + IG+P+ A LT P PV
Sbjct: 325 FGVRQLLERKQGLFRMKMMGKRVNYAARSVISPDVSLETNQIGLPMFAALQLTVPEPVNS 384
Query: 567 WNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRL 614
+NV LR +V NGP+ YPGA + DG +V + Q QR+++A+ L
Sbjct: 385 FNVDYLRALVENGPDKYPGAAAVVFPDGKLVSLKGRQPHQRKAIARSL 432
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 59/99 (59%), Gaps = 2/99 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PD L + IG+P+ A LT P PV +NV LR +V NGP+ YPGA +
Sbjct: 349 YAARSVISPDVSLETNQIGLPMFAALQLTVPEPVNSFNVDYLRALVENGPDKYPGAAAVV 408
Query: 74 NEDGSVVRISSSQAVQRESLAKRLI--TPEDQQHRAIMK 110
DG +V + Q QR+++A+ L T D++ R +++
Sbjct: 409 FPDGKLVSLKGRQPHQRKAIARSLYQSTNPDKKPRVVLR 447
>gi|428672959|gb|EKX73872.1| DNA-directed RNA polymerase I, putative [Babesia equi]
Length = 1850
Score = 121 bits (304), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 86/270 (31%), Positives = 135/270 (50%), Gaps = 30/270 (11%)
Query: 375 KLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRP-LSMEQMPPVEHSRNKL 433
KL+T FL + P I + + V PN RP L V H+R+
Sbjct: 319 KLFTENPGFLGNIFP----QSRFHGWRIFIMDCMGVSPNRFRPPLVTSDKQIVLHARSSA 374
Query: 434 ---------YQSILYSCGSLKSVIMAMKNKEQ-SDLLS-----------EALKGIRGDTL 472
+ IL+ + ++ A K++E S LL E G
Sbjct: 375 LLEIVIANEFLKILFRVKNHPNIQEAFKDEEYISKLLGYNVNETQLRQFEEYVCGSGCDF 434
Query: 473 NNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFA 532
N+ + N LQ + + MD+ T+ Q G+KQ ++ K+G +RQNM+GKRVN++
Sbjct: 435 NSSIYNHTLNLQRRLSMYMDS--GKQGTSTLAQRPGIKQSMEHKSGTVRQNMLGKRVNYS 492
Query: 533 GRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
R+VI PD +++ + +G+PL+FA LT P VT +NV LRK+V+NG +YPGAN +++
Sbjct: 493 ARTVIAPDCFMDTNQMGMPLKFAMELTIPEHVTKYNVNFLRKLVLNGSKIYPGANFLRDS 552
Query: 593 DGSVVRISSSQAVQRESLAKRLIT--PEGN 620
+G + +S+ +R + AK L+T EGN
Sbjct: 553 NGRLYSLSTLSYSERVAKAKLLLTGITEGN 582
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 58/86 (67%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ R+VI PD +++ + +G+PL+FA LT P VT +NV LRK+V+NG +YPGAN ++
Sbjct: 491 YSARTVIAPDCFMDTNQMGMPLKFAMELTIPEHVTKYNVNFLRKLVLNGSKIYPGANFLR 550
Query: 74 NEDGSVVRISSSQAVQRESLAKRLIT 99
+ +G + +S+ +R + AK L+T
Sbjct: 551 DSNGRLYSLSTLSYSERVAKAKLLLT 576
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 7/124 (5%)
Query: 122 EILKLKYYTDQEVKQLSV--VKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGN 179
E + L + +++E+ LSV +K + S G + +YD A+G S+ C++C N
Sbjct: 13 EGISLSFLSNEEIHTLSVSEIKNIGRSGYESAGKSC---IYDPALGS-SDIYKHCSSC-N 67
Query: 180 NYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDA 239
T C GH+GHI+ VP+ + L + LLK CF C K+ + L F L A
Sbjct: 68 EMTNCDGHLGHIDFAVPLFHPLMLPSLVKLLKTVCFYCLKLKLRKKQVLKFQRLFDLAKA 127
Query: 240 GYVT 243
G ++
Sbjct: 128 GMLS 131
>gi|308159479|gb|EFO62008.1| RNA polymerase AI large subunit [Giardia lamblia P15]
Length = 2148
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/254 (31%), Positives = 131/254 (51%), Gaps = 42/254 (16%)
Query: 403 MFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMK---------- 452
+FI++L+VPPN RP M ++H N +IL C +++ + + +
Sbjct: 351 LFIKTLLVPPNRQRPSMMLNQAFIDHPMNTHLLAILTICNTIEQLRSSPELAEFVSKHAL 410
Query: 453 ---NKEQSDLLSEALKGI---------RGDTLN-----NKLQNSWHELQYN--------V 487
N S + S GI R D N L N EL + +
Sbjct: 411 DDINVRTSHVPSSVTDGIDELGGIGMFRTDRYNFVKDPELLANGMVELSTSQKPVPEALI 470
Query: 488 DLLMDAKLNINKTTGAHQI------DGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDP 541
+ ++ +L++++ + +G+KQ+L+ K G+ R N+MGKR N+AGRSVI PD
Sbjct: 471 EAMLVLQLHVSRYLDGTVLTKTIFSNGIKQLLEKKEGLFRMNIMGKRGNYAGRSVIAPDA 530
Query: 542 YLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISS 601
L+ D IG+P FAK LT+P P+ +NV L+ +++INGP YPGA+++ +E GS V ++
Sbjct: 531 NLDTDEIGLPEYFAKKLTFPEPINEYNVELMARLIINGP-TYPGASLLIDESGSRVLLTQ 589
Query: 602 SQAVQRESLAKRLI 615
QR++LA L+
Sbjct: 590 LSYEQRKALAHTLL 603
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 65/121 (53%), Gaps = 1/121 (0%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
L L Y++ ++++L+ ++ + +++G I GG YD AMGP D C TCG +
Sbjct: 13 LTLSTYSEDDIRKLATCRIVTEQGLDNVGLPIRGGYYDPAMGP-RLFYDVCETCGLRWKH 71
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVT 243
C GH+G++ELPV N FFR L KL C CH+ I + + LLDAG V
Sbjct: 72 CPGHVGYVELPVYCYNHFFFRYTLQLYKLVCHSCHRFLITDLQAITIETGLLLLDAGLVC 131
Query: 244 Q 244
+
Sbjct: 132 E 132
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 81/156 (51%), Gaps = 6/156 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD L+ D IG+P FAK LT+P P+ +NV L+ +++INGP YPGA+++
Sbjct: 520 YAGRSVIAPDANLDTDEIGLPEYFAKKLTFPEPINEYNVELMARLIINGP-TYPGASLLI 578
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIM---KEKIITRQEVVPEILKLKYYT 130
+E GS V ++ QR++LA L+ ++ A E+I T + P + ++ Y
Sbjct: 579 DESGSRVLLTQLSYEQRKALAHTLLVDFSKEPVAPTVEGSEEIQTAPDTNPTLQNMRSY- 637
Query: 131 DQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGP 166
D + S P L HT+P L P
Sbjct: 638 DLRGMRTSFADTLKPPKI-LLRHTLPNDFVILNRQP 672
>gi|159117294|ref|XP_001708867.1| RNA polymerase AI large subunit [Giardia lamblia ATCC 50803]
gi|157436981|gb|EDO81193.1| RNA polymerase AI large subunit [Giardia lamblia ATCC 50803]
Length = 2142
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/254 (32%), Positives = 130/254 (51%), Gaps = 42/254 (16%)
Query: 403 MFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMK---------- 452
+FI++L+VPPN RP M ++H N +IL C +++ + + +
Sbjct: 351 LFIKTLLVPPNRQRPSLMLNQAFIDHPMNTHLLAILTICNTIEQLRSSPELAEFVSKHAL 410
Query: 453 ---NKEQSDLLSEALKGI---------RGDTLN-----NKLQNSWHELQYN--------V 487
N S + S GI R D N L N EL + V
Sbjct: 411 DDINVRASHVPSSVTDGIDELGGIGMFRTDRYNFVKDPELLANGMVELSTSQKPVPEALV 470
Query: 488 DLLMDAKLNINKTTGAHQID------GLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDP 541
+ ++ +L++++ + G+KQ+L+ K G+ R N+MGKR N+AGRSVI PD
Sbjct: 471 EAMLILQLHVSRYLDGTVLSKTIFSSGIKQLLEKKEGLFRMNIMGKRGNYAGRSVIAPDA 530
Query: 542 YLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISS 601
L+ D IG+P FAK LT+P P+ +NV L+ +++INGP YPGA+++ +E GS V ++
Sbjct: 531 NLDTDEIGLPEYFAKKLTFPEPINEYNVELMARLIINGP-TYPGASLLIDESGSRVLLTQ 589
Query: 602 SQAVQRESLAKRLI 615
QR++LA L+
Sbjct: 590 LSYEQRKALAHTLL 603
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 63/119 (52%), Gaps = 1/119 (0%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
L L Y++ ++++L+ +V + +++G I GG YD AMGP D C TCG +
Sbjct: 13 LTLSAYSEDDIRKLATCRVVTEQGLDNVGLPIRGGYYDPAMGP-RLFYDVCETCGLRWKH 71
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYV 242
C GH G++ELPV N FFR L KL C CH+ I L + LLDAG V
Sbjct: 72 CPGHAGYVELPVYCYNHFFFRYTLQLYKLVCHSCHRFLITELQALTIETGLLLLDAGLV 130
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD L+ D IG+P FAK LT+P P+ +NV L+ +++INGP YPGA+++
Sbjct: 520 YAGRSVIAPDANLDTDEIGLPEYFAKKLTFPEPINEYNVELMARLIINGP-TYPGASLLI 578
Query: 74 NEDGSVVRISSSQAVQRESLAKRLI 98
+E GS V ++ QR++LA L+
Sbjct: 579 DESGSRVLLTQLSYEQRKALAHTLL 603
>gi|345489196|ref|XP_001602571.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
[Nasonia vitripennis]
Length = 1355
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 121/460 (26%), Positives = 212/460 (46%), Gaps = 81/460 (17%)
Query: 159 LYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCH 218
L D +G S + C+TC +C GH G+++L +PV + +FR +L+ C C
Sbjct: 27 LLDSRLGTCSN-ANKCSTCNKPLNECIGHFGYLDLELPVFHVGYFRSTIGILQSICKKCS 85
Query: 219 KINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILA 278
++ + + ++++++ + Y+++ K L + + +
Sbjct: 86 QVMLNPKDKKMYLDRVLNPNLSYLSR-KALRKQILEK----------------------- 121
Query: 279 HGTKICDINDYKG--GEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKID 336
K C Y G ++ A + +++ K K P + I Q K+ + K+
Sbjct: 122 --AKKCTTCHYCGELNGTVKKAGLLKIVHEKYKNK-----KPSDPIV--QTKLAEYHKVV 172
Query: 337 KDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKE 396
+DN + L+ L I+ E ++ E D L N +C +P ++
Sbjct: 173 EDN--KELESILQSGLISILNPLEVIGLLERIPERDIPLLLMNP----QCSVP-----RD 221
Query: 397 LIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQ 456
LI T I VPP ++RP + + + N + MK E
Sbjct: 222 LILTRI------PVPPISIRPSIVSDLKAGTNEDN-----------------LTMKLSEI 258
Query: 457 SDLLSEALKGIRGDTLNNKLQN---SWHELQYNVDLLMDAKLN-INKTTGAHQID-GLKQ 511
L++EA++ R L K+QN W LQ +V L ++++++ I + + GL Q
Sbjct: 259 L-LINEAIQIHRQRGL--KIQNYTEDWEFLQLHVALYINSEMSGIPPSMQPQKAGRGLVQ 315
Query: 512 MLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTL 571
L GK G R N+ GKRV+F+ R+VI+PDP L I+ +GVP+ AK LTYP V N+ L
Sbjct: 316 RLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLRIEQVGVPIHVAKILTYPERVNKCNIEL 375
Query: 572 LRKMVINGPNVYPGANMIQ---NEDGSVVRISSSQAVQRE 608
+R++V NGP+V+PGAN I+ N++ +R + Q + ++
Sbjct: 376 MRRLVKNGPDVHPGANFIEIGKNKERRFLRYGNRQKMAQD 415
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 54/81 (66%), Gaps = 3/81 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L I+ +GVP+ AK LTYP V N+ L+R++V NGP+V+PGAN I+
Sbjct: 335 FSSRTVISPDPNLRIEQVGVPIHVAKILTYPERVNKCNIELMRRLVKNGPDVHPGANFIE 394
Query: 74 ---NEDGSVVRISSSQAVQRE 91
N++ +R + Q + ++
Sbjct: 395 IGKNKERRFLRYGNRQKMAQD 415
>gi|18312086|ref|NP_558753.1| DNA-directed RNA polymerase subunit A' [Pyrobaculum aerophilum str.
IM2]
gi|18159516|gb|AAL62935.1| DNA-directed RNA polymerase subunit A' (rpoA1) [Pyrobaculum
aerophilum str. IM2]
Length = 884
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 93/159 (58%), Gaps = 6/159 (3%)
Query: 460 LSEALK-GIRGDTLNNKLQNSWHELQYNVDLLMDAKLN---INKTTGAHQIDGLKQMLDG 515
++E LK I N + N W LQY+V D +L + K G + G+ Q L G
Sbjct: 255 MNEKLKIAIETGAPTNVVDNLWELLQYHVATYFDNELPGIPVAKHRGGRPLKGIAQRLKG 314
Query: 516 KTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKM 575
K G R ++ GKRVNF+ R+VI+PDP+++I+ +GVP + AK LT P VT WNV +LR+
Sbjct: 315 KEGRFRGSLSGKRVNFSARTVISPDPHISINEVGVPYDIAKVLTVPERVTAWNVDVLREY 374
Query: 576 VINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRL 614
VI GP +PGAN + +G RI R++LA+RL
Sbjct: 375 VIRGPESWPGANYVVTPEGR--RIDLRYVKDRKALAERL 411
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 55/84 (65%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP+++I+ +GVP + AK LT P VT WNV +LR+ VI GP +PGAN +
Sbjct: 330 FSARTVISPDPHISINEVGVPYDIAKVLTVPERVTAWNVDVLREYVIRGPESWPGANYVV 389
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+G RI R++LA+RL
Sbjct: 390 TPEGR--RIDLRYVKDRKALAERL 411
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 70/137 (51%), Gaps = 1/137 (0%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
+K + + +++ SV++V + ++ G + GG+ D +G ++E G C TCG +
Sbjct: 18 IKFGVLSPEMIRKYSVMEVTTSEVYDEGGLPVRGGIADRRLG-VAEPGSRCETCGQTHDV 76
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVT 243
C GH GHIEL PVI+ F R + +L+ +C C +I + + ++ L A +
Sbjct: 77 CPGHFGHIELVKPVIHVGFARIIYDVLRATCPNCGRIMLRDEEIERYRERLNKLKARWRL 136
Query: 244 QAKDLEETLFNEENLRL 260
A +L E + + R+
Sbjct: 137 LALNLHEKIRKKATERM 153
>gi|324120508|dbj|BAJ78645.1| RNA polymerase II largest subunit [Lepidocampa weberi]
Length = 1558
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 129/447 (28%), Positives = 186/447 (41%), Gaps = 99/447 (22%)
Query: 157 GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFL 216
GGL D G + +R C TC N T+C GH GHI+L PV ++ F + L+ CF
Sbjct: 51 GGLMDPRQG-VVDRLSRCQTCAGNMTECPGHFGHIDLAKPVYHSGFLTKIVKTLRCVCFY 109
Query: 217 CHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSI 276
C KLL + + K++ + + RL + D
Sbjct: 110 CS----------------KLLVSPTTPRIKEILQKSKGQPRKRL-----AAVYD------ 142
Query: 277 LAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKID 336
L G IC+ GG+E+ + KR A YQ KI
Sbjct: 143 LCKGKTICE-----GGDEMDLQREDDPSVQQPKR-----AGHGGCGRYQP-------KIR 185
Query: 337 KDNLDQSLD-KSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTK 395
+ L+ + + K LN+ S + ++ + A V F+ + E C I +D
Sbjct: 186 RAALELTAEWKHLNEDSQE-----KKIALTAERVHEIFRHISDEE-----CYILGMDP-- 233
Query: 396 ELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKE 455
+ D M + L VPP +RP +V+M +
Sbjct: 234 KFARPDWMIVTVLPVPPLCVRP----------------------------AVVMFGSARN 265
Query: 456 QSDL---LSEALKGIRGDTLNNKLQNSWHELQYNVDLLMD--AKLNINKTTG---AHQID 507
Q DL LS+ +K N + + H L NV +L A L N G A Q
Sbjct: 266 QDDLTHKLSDIIKANNELKRNEETGAATHILSENVKMLQFHVATLVDNDMPGLPRAMQKS 325
Query: 508 G-----LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPV 562
G +K L GK G IR N+MGKRV+F+ R+VITPDP L ID +GVP A+ LT+P
Sbjct: 326 GRPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPE 385
Query: 563 PVTPWNVTLLRKMVINGPNVYPGANMI 589
VTP+N+ ++++V G + YPGA I
Sbjct: 386 IVTPFNIDKMQELVRRGNSQYPGAKYI 412
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 40/59 (67%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 72
F R+VITPDP L ID +GVP A+ LT+P VTP+N+ ++++V G + YPGA I
Sbjct: 354 FSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPGAKYI 412
>gi|324120552|dbj|BAJ78667.1| RNA polymerase II largest subunit [Blattella nipponica]
Length = 1598
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 122/460 (26%), Positives = 191/460 (41%), Gaps = 109/460 (23%)
Query: 158 GLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLC 217
GL D G + +R C TC N T+C GH GHI+L PV + F +L+ CF C
Sbjct: 51 GLMDPRQG-VMDRNSRCQTCAGNQTECPGHFGHIDLAKPVFHVGFLTKSIKILRCVCFYC 109
Query: 218 HKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSIL 277
K+ + T+ I ++ + G P + + V L
Sbjct: 110 SKMLVSPTNPK--IKEVVMKSKG--------------------QPRKRLTFVYD-----L 142
Query: 278 AHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSF---- 333
G IC+ GG+E+ I P + + Q RK
Sbjct: 143 CKGKNICE-----GGDEMD----------------IQKDNPDDPANQQPRKQGHGGCGRY 181
Query: 334 --KIDKDNLDQSLD-KSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPV 390
I + LD + + K +N+ S +E+ +++E + K T+E ++ + P
Sbjct: 182 QPNIRRTGLDLTAEWKHVNEDS------QEKKISLSAERVWEIFKHITDEECYILGMDP- 234
Query: 391 LDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMA 450
+ D M + L VPP ++RP +V+M
Sbjct: 235 -----KFARPDWMIVTVLPVPPLSVRP----------------------------AVVMY 261
Query: 451 MKNKEQSDL---LSEALKGIRGDTLNNKLQNSWHELQYNVDLLMD--AKLNINKTTG--- 502
+ Q DL L++ +K N + + H + N+ +L A L N G
Sbjct: 262 GSARNQDDLTHKLADIIKSNNELIRNEQAGAAAHVISENIKMLQFHVATLVDNDMPGLPR 321
Query: 503 AHQIDG-----LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKT 557
A Q G +K L GK G IR N+MGKRV+F+ R+VITPDP L ID +GVP A+
Sbjct: 322 AMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQN 381
Query: 558 LTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
+T+P VTP+N+ ++++V G + YPGA I ++G +
Sbjct: 382 MTFPEIVTPFNIDKMQELVRRGNSQYPGAKYIVRDNGERI 421
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 44/67 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ +T+P VTP+N+ ++++V G + YPGA I
Sbjct: 355 FSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNIDKMQELVRRGNSQYPGAKYIV 414
Query: 74 NEDGSVV 80
++G +
Sbjct: 415 RDNGERI 421
>gi|238613881|ref|XP_002398553.1| hypothetical protein MPER_00833 [Moniliophthora perniciosa FA553]
gi|215475317|gb|EEB99483.1| hypothetical protein MPER_00833 [Moniliophthora perniciosa FA553]
Length = 179
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 80/111 (72%)
Query: 508 GLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPW 567
G+KQ L+ K G+ R++MMGKRVN+A RSVI+PD + + IG+P FAK LTYP PVTP+
Sbjct: 10 GVKQGLEKKEGLFRKHMMGKRVNYAARSVISPDVNIEPNEIGIPPVFAKKLTYPEPVTPF 69
Query: 568 NVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPE 618
N LR+ VI+GP V+PGA+M++ EDG V + QR ++A +L+TP+
Sbjct: 70 NFHKLRQQVISGPRVHPGASMVEFEDGHQVSLDKLSVDQRTAIANQLLTPQ 120
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 65/100 (65%)
Query: 17 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 76
RSVI+PD + + IG+P FAK LTYP PVTP+N LR+ VI+GP V+PGA+M++ ED
Sbjct: 36 RSVISPDVNIEPNEIGIPPVFAKKLTYPEPVTPFNFHKLRQQVISGPRVHPGASMVEFED 95
Query: 77 GSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKIITR 116
G V + QR ++A +L+TP++ ++ + TR
Sbjct: 96 GHQVSLDKLSVDQRTAIANQLLTPQEGDRSTPGRKGLHTR 135
>gi|334188504|ref|NP_001190573.1| nuclear RNA polymerase C1 [Arabidopsis thaliana]
gi|332009887|gb|AED97270.1| nuclear RNA polymerase C1 [Arabidopsis thaliana]
Length = 1391
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 124/475 (26%), Positives = 205/475 (43%), Gaps = 77/475 (16%)
Query: 130 TDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+D EV + + V+V++ ++ GL D MGP +++ CTTC N+ C GH G
Sbjct: 32 SDLEVMKAAEVQVWNIGLYDHSFKPYENGLLDPRMGPPNKK-SICTTCEGNFQNCPGHYG 90
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLE 249
+++L +PV N +F + +LK C + + + L + + K E
Sbjct: 91 YLKLDLPVYNVGYFNFILDILKCICKVTE-----------LADYVSLRCSNMLLDEKLYE 139
Query: 250 ETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVK 309
+ L N R+ P + +L + V K C S +Q +
Sbjct: 140 DHLRKMRNPRMEPLKKTELAKAVV--------KKC------------STMASQRII--TC 177
Query: 310 RKCIFCATPINAISYQ-------QRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQG 362
+KC + + I+ Q R I +ID+ S K + N + +
Sbjct: 178 KKCGYLNGMVKKIAAQFGIGISHDRSKIHGGEIDECKSAISHTKQSTAAINPLTYVLDPN 237
Query: 363 YVMASEVEADFKKLWTNEHLFLKC-LIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSME 421
V+ FK++ + C L+ + + LI T ++VPP ++RP M
Sbjct: 238 LVLGL-----FKRMSDKD-----CELLYIAYRPENLIIT------CMLVPPLSIRPSVM- 280
Query: 422 QMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWH 481
+ ++ + N L LK +I+ N +LS+ T + K W
Sbjct: 281 -IGGIQSNENDL-------TARLKQIILG--NASLHKILSQP-------TSSPKNMQVWD 323
Query: 482 ELQYNVDLLMDAKL-NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPD 540
+Q V +++++ H + G+ Q L GK G R N+ GKRV F GR+VI+PD
Sbjct: 324 TVQIEVARYINSEVRGCQNQPEEHPLSGILQRLKGKGGRFRANLSGKRVEFTGRTVISPD 383
Query: 541 PYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGS 595
P L I +G+P+ A+ LT+P V+ N+ LR+ V NGPN YPGA ++ DGS
Sbjct: 384 PNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPGARNVRYPDGS 438
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 43/65 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L I +G+P+ A+ LT+P V+ N+ LR+ V NGPN YPGA ++
Sbjct: 374 FTGRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPGARNVR 433
Query: 74 NEDGS 78
DGS
Sbjct: 434 YPDGS 438
>gi|379005505|ref|YP_005261177.1| DNA-directed RNA polymerase subunit A'' [Pyrobaculum oguniense TE7]
gi|375160958|gb|AFA40570.1| DNA-directed RNA polymerase subunit A'' [Pyrobaculum oguniense TE7]
Length = 884
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 93/159 (58%), Gaps = 6/159 (3%)
Query: 460 LSEALK-GIRGDTLNNKLQNSWHELQYNVDLLMDAKLN---INKTTGAHQIDGLKQMLDG 515
++E LK I N + N W LQY+V D +L + K G + G+ Q L G
Sbjct: 255 MNEKLKIAIETGAPTNVVDNLWDLLQYHVATYFDNELPGIPVAKHRGGRPLKGIAQRLKG 314
Query: 516 KTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKM 575
K G R ++ GKRVNF+ R+VI+PDP+++I+ +GVP + AK LT P VT WN+ +LR+
Sbjct: 315 KEGRFRGSLSGKRVNFSARTVISPDPHISINEVGVPTDIAKILTVPEKVTAWNIDVLREY 374
Query: 576 VINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRL 614
VI GP +PGAN + +G RI R++LA+RL
Sbjct: 375 VIRGPETWPGANYVVTPEGR--RIDLRYVKDRKALAERL 411
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 55/84 (65%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP+++I+ +GVP + AK LT P VT WN+ +LR+ VI GP +PGAN +
Sbjct: 330 FSARTVISPDPHISINEVGVPTDIAKILTVPEKVTAWNIDVLREYVIRGPETWPGANYVV 389
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+G RI R++LA+RL
Sbjct: 390 TPEGR--RIDLRYVKDRKALAERL 411
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 78/152 (51%), Gaps = 1/152 (0%)
Query: 109 MKEKIITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPIS 168
++E++ T V + +K + + +++ SV++V + ++ G + GG+ D +G ++
Sbjct: 3 LREELDTIPRKVIKSIKFGVLSPEVIRKYSVMEVTTSEVYDEGGLPVRGGISDRRLG-VA 61
Query: 169 ERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQL 228
E G C TCG + C GH GHIEL PV++ F R + +L+ +C C +I +
Sbjct: 62 EPGARCETCGQTHDVCPGHFGHIELVKPVVHVGFARVIYDILRTTCPNCGRIMLRDEEIA 121
Query: 229 LFINQIKLLDAGYVTQAKDLEETLFNEENLRL 260
+ ++ L + A++L E + + R+
Sbjct: 122 RYRERLTRLSKRWRLLAQNLHERIRRKAAERM 153
>gi|145592516|ref|YP_001154518.1| DNA-directed RNA polymerase subunit A' [Pyrobaculum arsenaticum DSM
13514]
gi|145284284|gb|ABP51866.1| DNA-directed RNA polymerase, subunit A' [Pyrobaculum arsenaticum
DSM 13514]
Length = 884
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 93/159 (58%), Gaps = 6/159 (3%)
Query: 460 LSEALK-GIRGDTLNNKLQNSWHELQYNVDLLMDAKLN---INKTTGAHQIDGLKQMLDG 515
++E LK I N + N W LQY+V D +L + K G + G+ Q L G
Sbjct: 255 MNEKLKIAIETGAPTNVVDNLWDLLQYHVATYFDNELPGIPVAKHRGGRPLKGIAQRLKG 314
Query: 516 KTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKM 575
K G R ++ GKRVNF+ R+VI+PDP+++I+ +GVP + AK LT P VT WN+ +LR+
Sbjct: 315 KEGRFRGSLSGKRVNFSARTVISPDPHISINEVGVPTDIAKILTVPEKVTAWNIDVLREY 374
Query: 576 VINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRL 614
VI GP +PGAN + +G RI R++LA+RL
Sbjct: 375 VIRGPETWPGANYVVTPEGR--RIDLRYVKDRKALAERL 411
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 55/84 (65%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP+++I+ +GVP + AK LT P VT WN+ +LR+ VI GP +PGAN +
Sbjct: 330 FSARTVISPDPHISINEVGVPTDIAKILTVPEKVTAWNIDVLREYVIRGPETWPGANYVV 389
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+G RI R++LA+RL
Sbjct: 390 TPEGR--RIDLRYVKDRKALAERL 411
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 78/152 (51%), Gaps = 1/152 (0%)
Query: 109 MKEKIITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPIS 168
+KE++ T V + +K + + +++ SV++V + ++ G + GG+ D +G ++
Sbjct: 3 LKEELDTIPRKVIKSIKFGVLSPEVIRKYSVMEVTTSEVYDEGGLPVRGGISDRRLG-VA 61
Query: 169 ERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQL 228
E G C TCG + C GH GHIEL PV++ F R + +L+ +C C +I +
Sbjct: 62 EPGARCETCGQTHDVCPGHFGHIELVKPVVHVGFARVIYDILRTTCPNCGRIMLRDEEIA 121
Query: 229 LFINQIKLLDAGYVTQAKDLEETLFNEENLRL 260
+ ++ L + A++L E + + R+
Sbjct: 122 RYRERLTRLSKRWRLLAQNLHERIRRKAAERM 153
>gi|156937038|ref|YP_001434834.1| DNA-directed RNA polymerase subunit A' [Ignicoccus hospitalis
KIN4/I]
gi|156566022|gb|ABU81427.1| DNA-directed RNA polymerase, subunit A' [Ignicoccus hospitalis
KIN4/I]
Length = 889
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 103/185 (55%), Gaps = 21/185 (11%)
Query: 446 SVIMAMKNKEQSDLLSEALKGIRGDTLNNKL-------------QNSWHELQYNVDLLMD 492
S+I+ + + DL + +R NNKL +N W LQY+V D
Sbjct: 231 SIILETGMRSEDDLTHKLADIVR---TNNKLRENIESGASEAMIENLWGLLQYHVATFFD 287
Query: 493 AKLN---INKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIG 549
++ + + L Q L GK G R N+ GKRV+F+ R+VI+PDP ++I+ +G
Sbjct: 288 NEIPGIPPARHRSGKPLRTLAQRLKGKEGRFRSNLSGKRVDFSARTVISPDPNISINEVG 347
Query: 550 VPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRES 609
VP+E AKTLT PV VTPWN+ +RK+VINGP+ +PGAN + +DG RI A R+
Sbjct: 348 VPIEVAKTLTVPVKVTPWNIEEMRKLVINGPDKWPGANYVIMKDGR--RIDLRYAKDRKI 405
Query: 610 LAKRL 614
+A+ L
Sbjct: 406 IAESL 410
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 60/84 (71%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP ++I+ +GVP+E AKTLT PV VTPWN+ +RK+VINGP+ +PGAN +
Sbjct: 329 FSARTVISPDPNISINEVGVPIEVAKTLTVPVKVTPWNIEEMRKLVINGPDKWPGANYVI 388
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+DG RI A R+ +A+ L
Sbjct: 389 MKDGR--RIDLRYAKDRKIIAESL 410
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 60/111 (54%), Gaps = 1/111 (0%)
Query: 112 KIITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERG 171
++ R + + + +K + E+++++VV V + ++ G + GG+ D MG ++ G
Sbjct: 6 RLAPRADKIIKEIKFGILSPDEIRKMAVVAVVTDQAYDEAGMPVEGGIMDPRMG-VTSPG 64
Query: 172 DPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINI 222
C TCGN C GH G+IEL PVI+ F + L+ +C +C ++ +
Sbjct: 65 QRCPTCGNTLHDCPGHFGYIELVKPVIHYEFVPHIYDALRATCRVCGRVKL 115
>gi|156086950|ref|XP_001610882.1| DNA directed RNA polymerase [Babesia bovis T2Bo]
gi|154798135|gb|EDO07314.1| DNA directed RNA polymerase [Babesia bovis]
Length = 2016
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 92/149 (61%), Gaps = 1/149 (0%)
Query: 469 GDTLNNKLQNSWHELQYNVDLLMDA-KLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGK 527
G N+ + N+ LQ V L D+ K + Q G+KQ L+ K G +R NM+GK
Sbjct: 481 GSDFNSAVLNTIQNLQRKVSLYTDSSKTGSTINSKLPQRPGIKQSLEHKEGAVRHNMLGK 540
Query: 528 RVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGAN 587
RVN+A R+VI PD +L+ + +G+PL FA LT P VT +NV +LRK++INGP +YPGAN
Sbjct: 541 RVNYAARTVIAPDCFLDSNQMGIPLMFATELTVPENVTSYNVNMLRKLLINGPRIYPGAN 600
Query: 588 MIQNEDGSVVRISSSQAVQRESLAKRLIT 616
++E G + + + +R++ AK L+T
Sbjct: 601 FYRDEYGKLYNLGTLSINERKAKAKLLLT 629
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 64/99 (64%), Gaps = 2/99 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ R+VI PD +L+ + +G+PL FA LT P VT +NV +LRK++INGP +YPGAN +
Sbjct: 544 YAARTVIAPDCFLDSNQMGIPLMFATELTVPENVTSYNVNMLRKLLINGPRIYPGANFYR 603
Query: 74 NEDGSVVRISSSQAVQRESLAKRLIT--PEDQQHRAIMK 110
+E G + + + +R++ AK L+T + +Q R + +
Sbjct: 604 DEYGKLYNLGTLSINERKAKAKLLLTDISDGRQPRVVYR 642
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 75/148 (50%), Gaps = 10/148 (6%)
Query: 108 IMKEKIITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPI 167
+MK + EV L ++ + ++ LS ++ +P + + P ++D A+GP
Sbjct: 1 MMKYETTVSTEVCG--LSFEFLSSDAIRALSASEIGNP-SHHGQECAGPSCIHDSALGP- 56
Query: 168 SERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQ 227
S+ + C+TC + C GH+GH+ PVP+ + L + LLK +C C K+ + T Q
Sbjct: 57 SDLCNICSTC-QDVAACDGHLGHVNFPVPIYHPLLMPRLVKLLKSTCLYCRKLKL--TRQ 113
Query: 228 LLFINQIKLLDAGYVTQAKDLEETLFNE 255
+ + IKL D +V D+ LF+E
Sbjct: 114 RI-VKLIKLFDLLHVGLLSDM--LLFDE 138
>gi|358337315|dbj|GAA55692.1| DNA-directed RNA polymerase I subunit RPA1 [Clonorchis sinensis]
Length = 1612
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 87/328 (26%), Positives = 156/328 (47%), Gaps = 37/328 (11%)
Query: 326 QRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLK 385
+RK ++ L + K L++ S + +E ++ + LWTN+ L+
Sbjct: 61 ERKTCSDTNQSQEQLLEEARKQLSEMSKSSVNSKET-CLLPETARLFLRCLWTNDASLLR 119
Query: 386 CLIPVLDTT--KELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGS 443
L P+L++ ATD+ F+ ++++ P+ R EH +Y ++
Sbjct: 120 LLFPMLNSAAISHEFATDVFFMDAVLLSPSICRLPRYVGGLAFEHPETAVYSRVVRRAQC 179
Query: 444 LKSVI---------MAMKNKEQSDLLSEALKGIRGD------TLNNK------LQNSWHE 482
L ++ ++ ++ ++L + D LN+ L+ +
Sbjct: 180 LSHIVDFIEQRQQQAQLEQTDRESAFQQSLADLSTDPDASLVNLNDATRVEGALKLACIL 239
Query: 483 LQYNVDLLMDAKL-----NINKTTGAH-----QIDGLKQMLDGKTGMIRQNMMGKRVNFA 532
LQ V+ L D ++ G ++ GL+Q L+ K G+ R ++MGKRVN+A
Sbjct: 240 LQAAVNGLYDMNAATIPTGLDSKLGGMGKSVVRLPGLRQRLEKKEGLFRMHIMGKRVNYA 299
Query: 533 GRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
RSVI+PDP L++ +GVPL FA LT+P PV N+ +R++V NGP++YPGA +Q
Sbjct: 300 CRSVISPDPILDVTEVGVPLFFATRLTFPTPVNMHNLAQMRQLVCNGPDIYPGARSVQTP 359
Query: 593 DGSVV---RISSSQAVQRESLAKRLITP 617
+G ++ R +++QA +R +TP
Sbjct: 360 EGQLIHLPRGNTAQAKRRRETLACCLTP 387
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 57/87 (65%), Gaps = 3/87 (3%)
Query: 17 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 76
RSVI+PDP L++ +GVPL FA LT+P PV N+ +R++V NGP++YPGA +Q +
Sbjct: 301 RSVISPDPILDVTEVGVPLFFATRLTFPTPVNMHNLAQMRQLVCNGPDIYPGARSVQTPE 360
Query: 77 GSVV---RISSSQAVQRESLAKRLITP 100
G ++ R +++QA +R +TP
Sbjct: 361 GQLIHLPRGNTAQAKRRRETLACCLTP 387
>gi|328871266|gb|EGG19637.1| RNA polymerase I [Dictyostelium fasciculatum]
Length = 1662
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 117/216 (54%), Gaps = 18/216 (8%)
Query: 401 DIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLL 460
D F+ + V P+ RP + E + N Y+ I+ + ++ A +++ ++
Sbjct: 337 DSFFLTAFPVLPSRARPPNFMNNRRSESTMNNHYRGIVTHNRMITKLLDAKEDESAKSMV 396
Query: 461 SEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMI 520
+ ELQ +++ + D KT+ + G+KQ+L+ K G+
Sbjct: 397 TNVC-----------------ELQMHINNMYDNS-KAQKTSRSVLAAGVKQILEKKEGLF 438
Query: 521 RQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGP 580
R++MMGKRVN+A R+VI+PD L + +GVP FA+TLT+P PVT +N + + VINGP
Sbjct: 439 RKHMMGKRVNYAARTVISPDISLETNEMGVPQYFARTLTFPQPVTHFNYQQMAQAVINGP 498
Query: 581 NVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLIT 616
+ YPGAN I++EDG + ++ R +L+K L+T
Sbjct: 499 DNYPGANYIEDEDGFYINLAKETHENRVALSKTLLT 534
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 75/125 (60%), Gaps = 1/125 (0%)
Query: 126 LKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCK 185
+YT ++++++SV ++ P F+ +G+ + GGLYD A+GP E D C TCG++Y +C
Sbjct: 18 FSFYTSEQIRKISVKQITEPDAFDIIGNCVSGGLYDAALGPF-EPPDLCVTCGDHYLRCP 76
Query: 186 GHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQA 245
GH GHIEL +PV N + F + + + +C CH FI ++K+L G V +A
Sbjct: 77 GHFGHIELSLPVYNPVLFPTMIKIFQNTCLECHTFKHGKIVINEFIEELKVLYTGDVVKA 136
Query: 246 KDLEE 250
+DL E
Sbjct: 137 RDLRE 141
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 57/86 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ R+VI+PD L + +GVP FA+TLT+P PVT +N + + VINGP+ YPGAN I+
Sbjct: 449 YAARTVISPDISLETNEMGVPQYFARTLTFPQPVTHFNYQQMAQAVINGPDNYPGANYIE 508
Query: 74 NEDGSVVRISSSQAVQRESLAKRLIT 99
+EDG + ++ R +L+K L+T
Sbjct: 509 DEDGFYINLAKETHENRVALSKTLLT 534
>gi|403221173|dbj|BAM39306.1| DNA-directed RNA polymerase [Theileria orientalis strain Shintoku]
Length = 1960
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 82/115 (71%), Gaps = 2/115 (1%)
Query: 508 GLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPW 567
GLKQ L+ KTG IRQNM+GKRVN++ R+VI PD +++ + +G+PL+FA LT P VT +
Sbjct: 478 GLKQTLEHKTGTIRQNMIGKRVNYSARTVIAPDCFIDTNQMGMPLKFAMELTVPEYVTRF 537
Query: 568 NVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLIT--PEGN 620
NV LRKMVINGP VYPGA ++++ +G V +S+ +R + +K L+ EGN
Sbjct: 538 NVNFLRKMVINGPKVYPGAKLLRDTNGKVYNLSALSHNERVAKSKLLLVGLAEGN 592
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 58/85 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ R+VI PD +++ + +G+PL+FA LT P VT +NV LRKMVINGP VYPGA +++
Sbjct: 501 YSARTVIAPDCFIDTNQMGMPLKFAMELTVPEYVTRFNVNFLRKMVINGPKVYPGAKLLR 560
Query: 74 NEDGSVVRISSSQAVQRESLAKRLI 98
+ +G V +S+ +R + +K L+
Sbjct: 561 DTNGKVYNLSALSHNERVAKSKLLL 585
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 63/133 (47%), Gaps = 7/133 (5%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGG--LYDLAMGPISERGDPCTTCGN 179
E L + + ++++ LS +V +GH G +YD +G +E C +C N
Sbjct: 13 EGLSFSFLSSRDIRSLSFSEV---KNVGRMGHESAGKSCIYDPCLGS-TEIYRLCGSC-N 67
Query: 180 NYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDA 239
+ C GH+GHIE +P+ + + + + LLK CF C +I ++ ++
Sbjct: 68 EMSNCDGHLGHIEFAIPLYHPMMMKSLCKLLKTVCFYCGRIKFRDWKLSKYVALFEMCQT 127
Query: 240 GYVTQAKDLEETL 252
G ++ K L++ L
Sbjct: 128 GMLSDTKYLDQML 140
>gi|47156939|gb|AAT12325.1| DNA-directed RNA polymerase I largest subunit [Antonospora
locustae]
Length = 1089
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 86/247 (34%), Positives = 132/247 (53%), Gaps = 13/247 (5%)
Query: 375 KLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLY 434
K++ N C I ++ K + D F+R + V PN LRP++ E S+N
Sbjct: 123 KVFRNGCFMRPCDI-LITLQKACMDADQYFLRVVPVVPNRLRPINHCDGRVFEDSQNIFL 181
Query: 435 QSILYSCGSLKSVIMA------MKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVD 488
I+ ++K + A M+ K + E +G+ G L +++L +V+
Sbjct: 182 TKIIKCALAVKENVAASENIDIMQEKRPNGSEREPYEGLNGAEL--PCSKEFNDLISSVN 239
Query: 489 LLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSI 548
D+ +I G H +G+KQ+L+ K G+ R+ +MGKRVN+A RSVI+PDP L I
Sbjct: 240 EYYDSS-SITYAKG-HTPNGIKQLLERKEGLFRKYIMGKRVNYAARSVISPDPNLETREI 297
Query: 549 GVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRE 608
G+PL FAK LT+P VTP+N LR+ VINGP YPGA ++++ D V + +R
Sbjct: 298 GLPLVFAKKLTFPENVTPFNHDRLRRAVINGPK-YPGAALLKSGD-VVTNLLHVPEEKRV 355
Query: 609 SLAKRLI 615
SLA +L+
Sbjct: 356 SLANQLL 362
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 120 VPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGN 179
+P + YT E+ +S V+V P +F+SLGH +P GLYD MGP+ G C TC
Sbjct: 3 LPSSVSFTTYTASEILAISCVEVSVPASFDSLGHPLPNGLYDERMGPLKMDG-ICRTCNL 61
Query: 180 NYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLC 217
Y +C GH GHI LP +IN + F + + +C C
Sbjct: 62 GYFECPGHFGHIMLPDVMINPMHFDLIFKKVASTCERC 99
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 70/128 (54%), Gaps = 6/128 (4%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP L IG+PL FAK LT+P VTP+N LR+ VINGP YPGA +++
Sbjct: 280 YAARSVISPDPNLETREIGLPLVFAKKLTFPENVTPFNHDRLRRAVINGPK-YPGAALLK 338
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEK--IITRQEVV--PEILKLKYY 129
+ D V + +R SLA +L+ +R + K ++ RQ + P I+ K
Sbjct: 339 SGD-VVTNLLHVPEEKRVSLANQLLIGRKTVYRHLNKTDFLLVNRQPTLHKPSIMAYKVR 397
Query: 130 TDQEVKQL 137
Q K L
Sbjct: 398 ILQGEKTL 405
>gi|260796451|ref|XP_002593218.1| hypothetical protein BRAFLDRAFT_120136 [Branchiostoma floridae]
gi|229278442|gb|EEN49229.1| hypothetical protein BRAFLDRAFT_120136 [Branchiostoma floridae]
Length = 1934
Score = 119 bits (298), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 131/484 (27%), Positives = 200/484 (41%), Gaps = 115/484 (23%)
Query: 133 EVKQLSVVKVFSPITFNSL---GHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
E+K++SV + I ++ + G GL D G I +R C TC N +C GH G
Sbjct: 30 EIKRMSVTE--GGIRYSEMMEGGRPKLCGLMDPRQGVI-DRSARCQTCAGNMAECPGHFG 86
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLE 249
HIEL PV + F +++ CF C KLL + + KD+
Sbjct: 87 HIELAKPVYHIGFLTKTIKIMRCVCFFCS----------------KLLVSPDDPRIKDIV 130
Query: 250 ETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVK 309
+ RL +HV L G IC+ GG+E+ + +
Sbjct: 131 NKSKGQPKKRL----------THVYD-LCKGKMICE-----GGDEVDADVGPEEGKEEKP 174
Query: 310 RKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGYVMASE 368
+ C YQ +I + LD + + K +N+ S + RK + + A
Sbjct: 175 KGHGGCG------RYQP-------QIRRAGLDLTAEWKHVNEDSQE--RKIQ---LSAER 216
Query: 369 VEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEH 428
V FK++ E C I +D D M L V P +RP
Sbjct: 217 VLEIFKRISDEE-----CSIMGMD--PRFARPDWMVCTVLPVAPLQVRP----------- 258
Query: 429 SRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHE------ 482
SV+M + Q DL + ++ +NN+L+ +
Sbjct: 259 -----------------SVVMFGAARGQDDLTHKLADIVK---INNQLKRNEMNGAAAHI 298
Query: 483 -------LQYNVDLLMDAKL-----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVN 530
LQ++V L+D ++ + K+ + +KQ L GK G IR N+MGKRV+
Sbjct: 299 IAEDTKMLQFHVTTLVDNEVPGMPRAVQKS--GRPLKSVKQRLKGKEGRIRGNLMGKRVD 356
Query: 531 FAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 590
F+ R+VITPDP L ID +G P A+ LT+P VTP+N+ ++++V G N YPGA I
Sbjct: 357 FSARAVITPDPNLQIDQVGCPRTVAQNLTFPEIVTPFNIDRMQELVRRGANQYPGAKYII 416
Query: 591 NEDG 594
+ G
Sbjct: 417 RDTG 420
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 41/64 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +G P A+ LT+P VTP+N+ ++++V G N YPGA I
Sbjct: 357 FSARAVITPDPNLQIDQVGCPRTVAQNLTFPEIVTPFNIDRMQELVRRGANQYPGAKYII 416
Query: 74 NEDG 77
+ G
Sbjct: 417 RDTG 420
>gi|302308245|ref|NP_985109.2| AER252Cp [Ashbya gossypii ATCC 10895]
gi|299789362|gb|AAS52933.2| AER252Cp [Ashbya gossypii ATCC 10895]
gi|374108334|gb|AEY97241.1| FAER252Cp [Ashbya gossypii FDAG1]
Length = 1459
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 130/515 (25%), Positives = 218/515 (42%), Gaps = 105/515 (20%)
Query: 109 MKEKIITRQEVVPEI---LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLA 163
MKE ++ +++P+ L+ + ++ S V++F+ F+ P GG D
Sbjct: 1 MKEVVV---DILPKRISGLEFSALSASDIVAQSEVEIFTRDLFDLEDGRAPKKGGALDSR 57
Query: 164 MGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIP 223
MG S + + C+TC C GH GHI+L +PV + +F+ +L+ C
Sbjct: 58 MGVSSSQAE-CSTCHGTLASCHGHFGHIKLALPVFHVGYFKATIQILQSIC--------- 107
Query: 224 ATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKI 283
K+ + L NEE+ R ++L +
Sbjct: 108 ----------------------KNCAKLLLNEEDKRQFLSELRR---------------- 129
Query: 284 CDINDYKGGEELRS-AFVAQVLSRHVK-RKCIFCATPINAI--SYQQRKIIKSFKIDKDN 339
G + LR A + +VL + K R+C+ C +N + + KI D
Sbjct: 130 ------PGIDNLRRMATLKKVLDQCKKQRRCLHCGM-LNGVVKKAAAGSGSAALKIIHDT 182
Query: 340 LDQSLDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEH------LFLK-----CLI 388
+ + K ++ I Q + E+E K+ N + LF + C +
Sbjct: 183 F-RWVGKKSAPEKDKWIGDWNQVLQHSPELERYMKRTMENLNPLKTLNLFKQISPQDCEL 241
Query: 389 PVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVI 448
+D+T + + R L PP +RP M Q P + + + L ++
Sbjct: 242 LGIDSTVKAGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVK--------LTEIV 293
Query: 449 MAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKL-------NINKTT 501
S L+ L+ +G ++NN ++ W LQ V + +++ N
Sbjct: 294 WT------SSLIKAGLE--KGISINNMMEQ-WDYLQMAVAMYINSDSVNPALMPGGNGGG 344
Query: 502 GAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYP 561
I G Q L GK G R N+ GKRV+F+GR+VI+PDP L+ID + VP AK LT+P
Sbjct: 345 KTKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTFP 404
Query: 562 VPVTPWNVTLLRKMVINGPNVYPGANMI--QNEDG 594
VT +N L+++++NG NV+PGAN + +NE+
Sbjct: 405 EKVTRYNKHKLQQLIVNGANVHPGANYLLKKNEEA 439
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI- 72
F R+VI+PDP L+ID + VP AK LT+P VT +N L+++++NG NV+PGAN +
Sbjct: 374 FSGRTVISPDPNLSIDEVAVPDRVAKVLTFPEKVTRYNKHKLQQLIVNGANVHPGANYLL 433
Query: 73 -QNEDG 77
+NE+
Sbjct: 434 KKNEEA 439
>gi|218884685|ref|YP_002429067.1| DNA-directed RNA polymerase subunit A' [Desulfurococcus
kamchatkensis 1221n]
gi|218766301|gb|ACL11700.1| DNA-directed RNA polymerase subunit A' [Desulfurococcus
kamchatkensis 1221n]
Length = 886
Score = 118 bits (296), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 61/151 (40%), Positives = 90/151 (59%), Gaps = 6/151 (3%)
Query: 467 IRGDTLNNKLQNSWHELQYNVDLLMDAK---LNINKTTGAHQIDGLKQMLDGKTGMIRQN 523
+ G + +++ W LQY++ D + L + K + G+ Q L GK G R N
Sbjct: 258 VEGGAPSAIIEDEWELLQYHITTYFDNEVPGLPVAKHRSGKTLKGIAQRLKGKEGRFRNN 317
Query: 524 MMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVY 583
+ GKRV+F+ R+VI+PDP L+I+ +GVP + AK LT P VTPWN+ +RK+V+NGP +
Sbjct: 318 LRGKRVDFSARTVISPDPSLSINEVGVPEDVAKILTIPERVTPWNIEEMRKLVLNGPEKW 377
Query: 584 PGANMIQNEDGSVVRISSSQAVQRESLAKRL 614
PGAN I DG R S + V R++ A+ L
Sbjct: 378 PGANYIVRPDG---RKISLKFVDRKAAAESL 405
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 78/141 (55%), Gaps = 11/141 (7%)
Query: 109 MKEKIITRQEVVPEILKLKY--YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGP 166
M KI+T + I ++K+ + E++++SV ++FS +++ G I GG+ D +G
Sbjct: 1 MSSKIVTNR-----ISRIKFGILSPDEIRKMSVTQIFSSEVYDNDGSPIDGGVMDRRLGA 55
Query: 167 ISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATS 226
I E G+ C CGN C GH GHIEL PVI+ F + + + LK +C C ++ IP
Sbjct: 56 I-EPGETCPICGNTRDSCPGHFGHIELAKPVIHAGFAKQILIYLKATCRNCGRLKIPEEE 114
Query: 227 Q---LLFINQIKLLDAGYVTQ 244
+ L ++ ++ L A Y+ +
Sbjct: 115 KGEYLRLLSDLQELGAPYLIK 135
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 56/84 (66%), Gaps = 3/84 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L+I+ +GVP + AK LT P VTPWN+ +RK+V+NGP +PGAN I
Sbjct: 325 FSARTVISPDPSLSINEVGVPEDVAKILTIPERVTPWNIEEMRKLVLNGPEKWPGANYIV 384
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
DG R S + V R++ A+ L
Sbjct: 385 RPDG---RKISLKFVDRKAAAESL 405
>gi|253745241|gb|EET01289.1| RNA polymerase AI large subunit [Giardia intestinalis ATCC 50581]
Length = 2144
Score = 118 bits (296), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 80/254 (31%), Positives = 131/254 (51%), Gaps = 42/254 (16%)
Query: 403 MFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMK---------- 452
+FI++L+VPPN RP + ++H N +IL C +++ + + +
Sbjct: 347 LFIKTLLVPPNRQRPSMLLNQAFIDHPMNSHLLAILTICNNIEKLRSSPELAEFVSNHAL 406
Query: 453 ---NKEQSDLLSEALKGI---------RGDTLN-----NKLQNSWHELQYN--------V 487
N S + S GI R D N L N EL + V
Sbjct: 407 DDINVRTSHVPSSVTDGIDEMGGIGMFRTDRYNFVKDPELLANGMVELSTSQKPVPEQLV 466
Query: 488 DLLMDAKLNINKTTGAHQI------DGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDP 541
+ ++ +L++++ + G+KQ+L+ K G+ R N+MGKR N+AGRSVI PD
Sbjct: 467 ESMLVLQLHVSRYLDGTVLTRTIFSSGIKQLLEKKEGLFRMNIMGKRGNYAGRSVIAPDA 526
Query: 542 YLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISS 601
L+ D IG+P FAK LT+P P++ +NV L+ +++INGP YPGA+++ +E GS V ++
Sbjct: 527 NLDTDEIGLPEYFAKKLTFPEPISEYNVELMARLIINGP-TYPGASVLIDESGSRVLLTE 585
Query: 602 SQAVQRESLAKRLI 615
QR+++A L+
Sbjct: 586 LSYEQRKAIAHTLL 599
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 65/121 (53%), Gaps = 1/121 (0%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
L L Y++ ++++L+ +V + +++G I GG YD AMGP D C TCG +
Sbjct: 13 LTLSTYSEDDIRRLATCRVVTEQGLDNVGLPIRGGYYDPAMGP-RLFYDVCETCGLRWKH 71
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVT 243
C GH+G++ELPV N FFR L KL C C++ I + + LLDAG V
Sbjct: 72 CPGHVGYVELPVYCYNHFFFRYTLQLYKLVCHSCYRFIITDIQAITIETGLLLLDAGLVC 131
Query: 244 Q 244
+
Sbjct: 132 E 132
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD L+ D IG+P FAK LT+P P++ +NV L+ +++INGP YPGA+++
Sbjct: 516 YAGRSVIAPDANLDTDEIGLPEYFAKKLTFPEPISEYNVELMARLIINGP-TYPGASVLI 574
Query: 74 NEDGSVVRISSSQAVQRESLAKRLI 98
+E GS V ++ QR+++A L+
Sbjct: 575 DESGSRVLLTELSYEQRKAIAHTLL 599
>gi|133314|sp|P28363.1|RPA1_EUPOC RecName: Full=DNA-directed RNA polymerase I subunit RPA1; AltName:
Full=DNA-directed RNA polymerase I largest subunit
gi|578406|emb|CAA47066.1| DNA-directed RNA polymerase I largest subunit [Euplotes
octocarinatus]
Length = 638
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/251 (31%), Positives = 131/251 (52%), Gaps = 26/251 (10%)
Query: 357 RKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLR 416
++++Q Y+ EV ++LW E L L D K I F+ +L+V N R
Sbjct: 318 QEKKQKYLSPIEVLEHMRRLWDVEDTLLNEL---FDNYK------IFFMNNLLVSQNRFR 368
Query: 417 PLSMEQMPPVE-----HSRNKLYQSILYSCGSLKSVIMAMKN-KEQSDLLSEALKG---- 466
P S + H+ + + I+ + + + I +N + +L +E+ K
Sbjct: 369 PESSGGKQSGDDRDYLHAHSAMLTKIINANIAFRRTIELKENLTDDRNLETESEKSKTQQ 428
Query: 467 ---IRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQN 523
+ + + ++ +W ELQ +V+ +D+ L + GL+Q+L+ K G+ R
Sbjct: 429 IDLSKTEITSKQVIKAWAELQESVNCYLDSSLAAKLEN--KEKPGLRQLLERKEGIFRMK 486
Query: 524 MMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVY 583
MMGKRVNFAGRSVI+PDPY++ D IGVP A+T+T+P P N+ L++ VING + +
Sbjct: 487 MMGKRVNFAGRSVISPDPYISTDQIGVPEFIARTITFPEPAK--NIEKLKRCVINGAHKH 544
Query: 584 PGANMIQNEDG 594
PGAN I+ +G
Sbjct: 545 PGANFIEYPNG 555
Score = 85.9 bits (211), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 72/127 (56%), Gaps = 1/127 (0%)
Query: 125 KLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPIS-ERGDPCTTCGNNYTK 183
+ +Y D+E++Q+SV ++ +P+ ++ L + G+ D +MG + ++ C TCG +
Sbjct: 17 RFSFYNDEEIQQMSVKEIHNPMAYDELNNPTSHGICDESMGVSALDKLSKCKTCGCDSVY 76
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVT 243
C GH+GHI+L N + + LLK C +CH++ I LF ++KL+ GY+
Sbjct: 77 CPGHMGHIKLTSTCYNPFTMKLLHSLLKSKCLVCHRLRISPKRIELFEIRLKLIKLGYLV 136
Query: 244 QAKDLEE 250
+A+ L +
Sbjct: 137 EAEKLSD 143
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDPY++ D IGVP A+T+T+P P N+ L++ VING + +PGAN I+
Sbjct: 494 FAGRSVISPDPYISTDQIGVPEFIARTITFPEPAK--NIEKLKRCVINGAHKHPGANFIE 551
Query: 74 NEDG 77
+G
Sbjct: 552 YPNG 555
>gi|124028420|ref|YP_001013740.1| DNA-directed RNA polymerase subunit A' [Hyperthermus butylicus DSM
5456]
gi|123979114|gb|ABM81395.1| DNA-directed RNA polymerase subunit A' [Hyperthermus butylicus DSM
5456]
Length = 881
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 79/122 (64%), Gaps = 3/122 (2%)
Query: 476 LQNSWHELQYNVDLLMDAKLN---INKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFA 532
+ W LQY+V D +L + + G + GL Q L GK G R N+ GKRV+++
Sbjct: 264 IDEHWTLLQYHVATYFDNELPRIPVARHRGGRPLKGLAQRLKGKEGRFRGNLSGKRVDYS 323
Query: 533 GRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
R+VI+PDP ++I+ +GVP+E AKTLT PVTPWN+ +R+ V+NGP+ +PGAN + +
Sbjct: 324 ARTVISPDPNISINEVGVPIEIAKTLTVRTPVTPWNIEEMRRYVLNGPDRWPGANYVITK 383
Query: 593 DG 594
DG
Sbjct: 384 DG 385
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 49/64 (76%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ R+VI+PDP ++I+ +GVP+E AKTLT PVTPWN+ +R+ V+NGP+ +PGAN +
Sbjct: 322 YSARTVISPDPNISINEVGVPIEIAKTLTVRTPVTPWNIEEMRRYVLNGPDRWPGANYVI 381
Query: 74 NEDG 77
+DG
Sbjct: 382 TKDG 385
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 63/111 (56%), Gaps = 2/111 (1%)
Query: 113 IITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGD 172
++ ++++ E+ K + E++++SV + + ++ G IPGGL D +G I+ G
Sbjct: 1 MVVEEKIIREV-KFGILSPDEIRKMSVTAIVTSELYDEDGRPIPGGLMDPRLGAIAP-GQ 58
Query: 173 PCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIP 223
C TCGN+ C GH G IEL PVI+ F + + +L+ +C C ++ +P
Sbjct: 59 ICPTCGNDAKGCPGHFGRIELVRPVIHVGFAKYIYDVLRATCRQCGRLLLP 109
>gi|327242113|gb|AEA40835.1| RNA polymerase II largest subunit [Pentatrichomonas hominis]
Length = 1721
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 125/496 (25%), Positives = 206/496 (41%), Gaps = 89/496 (17%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
+ +EVK+ + ++ P + + G + GGL DL MG S C TCG + C GH
Sbjct: 19 FDPEEVKKFAACEITKPQNYEN-GKIVTGGLSDLRMGTQSPEYR-CRTCGQDLQNCPGHF 76
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
G+I L P + F V +L++ C C ++ + + +++ + + + KD
Sbjct: 77 GYINLAEPFFHIGFSDKVYKILQMVCHKCGRLLVSYSDP-----EVQYIVTHF--KGKDR 129
Query: 249 EETLFNEENLRLH-----------PAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRS 297
+F + + + H P+Q ++VD + + G GE R
Sbjct: 130 FTRIFEKISGKTHKCAHPTEKNKDPSQADEVVDEEFWNRVNGGLN---------GEHHR- 179
Query: 298 AFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIR 357
VK C + + + KD L D S
Sbjct: 180 ----------VKEPC--------------NEAVPEVAMGKDFLVIYKDGS---------- 205
Query: 358 KREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRP 417
K ++ Y+ A V F+ + +++ L + P K +I T L VPP ++RP
Sbjct: 206 KTDEDYIPAERVLNIFENI-SDQDLRIMGFDPKRSHPKWMILT------VLPVPPLSVRP 258
Query: 418 L--SMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNK 475
S Q P + S+L + LK + + N L+E + ++
Sbjct: 259 QVSSPGQAAPSQDDVTHKLHSLLQTNEHLK---LQLANGAPDTALAEDRQLLQ------- 308
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRS 535
WH Y ++ NK+ ++ + Q L GK G IR ++ GKRVNF+ RS
Sbjct: 309 ----WHISTYFINDKPSMDRAENKSHRPLKV--ISQRLKGKEGHIRGHLSGKRVNFSARS 362
Query: 536 VITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGS 595
VI+PDP + ID +GVP E AK LT+P VT N L +V GP+ GAN I ++ G+
Sbjct: 363 VISPDPSIEIDQVGVPKELAKILTFPEVVTTLNQKWLEGIVAKGPDAEGGANFIISDTGT 422
Query: 596 VVRISSSQAVQRESLA 611
+ Q + ++L+
Sbjct: 423 KTDLQFCQKINTQNLS 438
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 47/81 (58%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP + ID +GVP E AK LT+P VT N L +V GP+ GAN I
Sbjct: 358 FSARSVISPDPSIEIDQVGVPKELAKILTFPEVVTTLNQKWLEGIVAKGPDAEGGANFII 417
Query: 74 NEDGSVVRISSSQAVQRESLA 94
++ G+ + Q + ++L+
Sbjct: 418 SDTGTKTDLQFCQKINTQNLS 438
>gi|374327623|ref|YP_005085823.1| DNA-directed RNA polymerase subunit alpha [Pyrobaculum sp. 1860]
gi|356642892|gb|AET33571.1| DNA-directed RNA polymerase subunit alpha [Pyrobaculum sp. 1860]
Length = 884
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 92/159 (57%), Gaps = 6/159 (3%)
Query: 460 LSEALK-GIRGDTLNNKLQNSWHELQYNVDLLMDAKLN---INKTTGAHQIDGLKQMLDG 515
++E LK I N + N W LQY+V D +L + K G + G+ Q L G
Sbjct: 255 MNEKLKIAIETGAPTNVVDNLWDLLQYHVATYFDNELPGIPVAKHRGGRPLKGIAQRLKG 314
Query: 516 KTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKM 575
K G R ++ GKRVN++ R+VI+PDP++ I+ +GVP + AK LT P VT WNV +LR+
Sbjct: 315 KEGRFRGSLSGKRVNYSARTVISPDPHIGINEVGVPYDIAKVLTVPERVTAWNVDVLREY 374
Query: 576 VINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRL 614
VI GP +PGAN + +G RI +++LA+RL
Sbjct: 375 VIRGPETWPGANYVITPEGR--RIDLRYVKDKKTLAERL 411
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 54/84 (64%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ R+VI+PDP++ I+ +GVP + AK LT P VT WNV +LR+ VI GP +PGAN +
Sbjct: 330 YSARTVISPDPHIGINEVGVPYDIAKVLTVPERVTAWNVDVLREYVIRGPETWPGANYVI 389
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+G RI +++LA+RL
Sbjct: 390 TPEGR--RIDLRYVKDKKTLAERL 411
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 74/144 (51%), Gaps = 1/144 (0%)
Query: 109 MKEKIITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPIS 168
++E+ T V + +K + + +++ SV++V + ++ G + GG+ D +G ++
Sbjct: 3 LREEFDTIPRKVIKSIKFGVLSPEIIRKYSVMEVTTSEVYDEGGLPVRGGIADRRLG-VA 61
Query: 169 ERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQL 228
E G C TCG + C GH GHIEL PV++ F R + +L+ +C C +I +
Sbjct: 62 EPGARCETCGQTHDVCPGHFGHIELVKPVVHVGFARVIYDILRTTCPNCGRIMLKDEEIE 121
Query: 229 LFINQIKLLDAGYVTQAKDLEETL 252
+ ++ L + A++L E +
Sbjct: 122 RYRERLTKLKKRWRLLAQNLHEKI 145
>gi|340056888|emb|CCC51227.1| DNA-directed RNA polymerase iii largest subunit [Trypanosoma vivax
Y486]
Length = 1533
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 120/466 (25%), Positives = 189/466 (40%), Gaps = 85/466 (18%)
Query: 158 GLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLC 217
G+ D +G + +R C TCG Y C GH GHI+L PV + FF V + + C C
Sbjct: 59 GVNDTRLG-VCDRSSVCGTCGLGYVDCVGHPGHIDLGAPVFHLGFFSTVMRICRTICKRC 117
Query: 218 HKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSIL 277
+ LLD + K L + + L A L++++ +
Sbjct: 118 SHV---------------LLDNVEIDYYK---RRLSSTKLEPLQRAMLIKMIQTD----- 154
Query: 278 AHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDK 337
A+ T++C L+ + V+ R P+ + + R +++ +
Sbjct: 155 AYKTRVC----------LKCGGLNGVVRR---------IRPMRLVHEKCRVVLRRGEESV 195
Query: 338 DNLDQSLDKSL------NKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVL 391
++ + D L NKS + R ++ V F+ + E L L P +
Sbjct: 196 EDPSKLFDVELRTARLYNKSLEE-CRDYVHDFLDPVRVRQLFQAIPPEEFALLG-LAPGV 253
Query: 392 DTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPV-EHSRNKLYQSILYSCGSLKSVIMA 450
L+ T L+VPP +RP + + Y IL S +L+
Sbjct: 254 SPLDLLMTT-------LLVPPVQVRPRGSSGTATIRDDDLTAQYNDILVSADTLQD---- 302
Query: 451 MKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKL-NINKTTGAHQIDGL 509
G K +W LQ L+D+ L +
Sbjct: 303 ------------------GSLDATKYTETWEMLQMRAARLLDSALPGFPPNVRTSDLKSY 344
Query: 510 KQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNV 569
Q L K G R N+ GKRV+++GRSVI+PDP L++D + VPL A+ LTYP V N
Sbjct: 345 AQRLKSKHGRFRCNLSGKRVDYSGRSVISPDPNLDVDELAVPLRVARVLTYPQRVYKCNH 404
Query: 570 TLLRKMVINGPNVYPGANMIQ-NEDGSVVRISSSQAVQRESLAKRL 614
L+R++V NGP V+PGA + ++GS + + + RE LA RL
Sbjct: 405 ELMRRLVRNGPYVHPGAVTVYLAQEGSSKSLKNER--DRERLAARL 448
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 59/102 (57%), Gaps = 4/102 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP L++D + VPL A+ LTYP V N L+R++V NGP V+PGA +
Sbjct: 366 YSGRSVISPDPNLDVDELAVPLRVARVLTYPQRVYKCNHELMRRLVRNGPYVHPGAVTVY 425
Query: 74 -NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKII 114
++GS + + + RE LA RL D R +M I+
Sbjct: 426 LAQEGSSKSLKNER--DRERLAARLAVG-DIVERHLMNGDIV 464
>gi|171186406|ref|YP_001795325.1| DNA-directed RNA polymerase subunit A' [Pyrobaculum neutrophilum
V24Sta]
gi|170935618|gb|ACB40879.1| DNA-directed RNA polymerase subunit A' [Pyrobaculum neutrophilum
V24Sta]
Length = 884
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 92/159 (57%), Gaps = 6/159 (3%)
Query: 460 LSEALK-GIRGDTLNNKLQNSWHELQYNVDLLMDAKLN---INKTTGAHQIDGLKQMLDG 515
++E LK I N + N W LQY+V D +L + K G + G+ Q L G
Sbjct: 255 MNEKLKIAIETGAPTNVVDNLWDLLQYHVATYFDNELPGIPVAKHRGGRPLKGIAQRLKG 314
Query: 516 KTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKM 575
K G R ++ GKRVNF+ R+VI+PDP+++I+ +GVP + AK LT P VT WNV +LR+
Sbjct: 315 KEGRFRGSLSGKRVNFSARTVISPDPHISINEVGVPYDIAKILTVPERVTEWNVDVLREY 374
Query: 576 VINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRL 614
V+ GP +PGAN + +G RI + +LA+RL
Sbjct: 375 VMRGPETWPGANYVITPEGR--RIDLRYVKDKRALAERL 411
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 54/84 (64%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP+++I+ +GVP + AK LT P VT WNV +LR+ V+ GP +PGAN +
Sbjct: 330 FSARTVISPDPHISINEVGVPYDIAKILTVPERVTEWNVDVLREYVMRGPETWPGANYVI 389
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+G RI + +LA+RL
Sbjct: 390 TPEGR--RIDLRYVKDKRALAERL 411
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 71/137 (51%), Gaps = 1/137 (0%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
+K + + +++ SV++V + ++ G + GG+ D +G ++E G C TCG +
Sbjct: 18 IKFGILSPEMIRKYSVMEVTTSEVYDEGGLPVRGGIADRRLG-VAEPGARCETCGQTHDV 76
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVT 243
C GH GH+EL PVI+ + R + +L+ +C C +I + + ++ L + +
Sbjct: 77 CPGHFGHVELVKPVIHVEYARIIYDVLRTTCPNCGRIMLKDEEIQRYRERLTKLKSKWRL 136
Query: 244 QAKDLEETLFNEENLRL 260
A +L E + + + R+
Sbjct: 137 LAMNLHEKIRKKASERM 153
>gi|390939171|ref|YP_006402909.1| DNA-directed RNA polymerase subunit A' [Desulfurococcus fermentans
DSM 16532]
gi|390192278|gb|AFL67334.1| DNA-directed RNA polymerase subunit A' [Desulfurococcus fermentans
DSM 16532]
Length = 886
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 90/151 (59%), Gaps = 6/151 (3%)
Query: 467 IRGDTLNNKLQNSWHELQYNVDLLMDAKLN---INKTTGAHQIDGLKQMLDGKTGMIRQN 523
+ G + +++ W LQY++ D ++ + K + G+ Q L GK G R N
Sbjct: 258 VEGGAPSAIIEDEWELLQYHITTYFDNEVPGVPVAKHRSGKTLKGIAQRLKGKEGRFRNN 317
Query: 524 MMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVY 583
+ GKRV+F+ R+VI+PDP L+I+ +GVP + AK LT P VTPWN+ +RK+V+NGP +
Sbjct: 318 LRGKRVDFSARTVISPDPSLSINEVGVPEDVAKILTIPERVTPWNIEEMRKLVLNGPEKW 377
Query: 584 PGANMIQNEDGSVVRISSSQAVQRESLAKRL 614
PGAN I DG R S + V R++ A+ L
Sbjct: 378 PGANYIVRPDG---RKISLKFVDRKAAAESL 405
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 78/141 (55%), Gaps = 11/141 (7%)
Query: 109 MKEKIITRQEVVPEILKLKY--YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGP 166
M KI+T + I ++K+ + E++++SV ++FS +++ G I GG+ D +G
Sbjct: 1 MSSKIVTNR-----ISRIKFGILSPDEIRKMSVTQIFSSEVYDNDGSPIDGGVMDRRLGA 55
Query: 167 ISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATS 226
I E G+ C CGN C GH GHIEL PVI+ F + + + LK +C C ++ IP
Sbjct: 56 I-EPGETCPICGNTRDSCPGHFGHIELAKPVIHVGFAKQILIYLKATCRNCGRLKIPEEE 114
Query: 227 Q---LLFINQIKLLDAGYVTQ 244
+ L ++ ++ L A Y+ +
Sbjct: 115 KGEYLRLLSDLQELGAPYLIK 135
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 56/84 (66%), Gaps = 3/84 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L+I+ +GVP + AK LT P VTPWN+ +RK+V+NGP +PGAN I
Sbjct: 325 FSARTVISPDPSLSINEVGVPEDVAKILTIPERVTPWNIEEMRKLVLNGPEKWPGANYIV 384
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
DG R S + V R++ A+ L
Sbjct: 385 RPDG---RKISLKFVDRKAAAESL 405
>gi|119719203|ref|YP_919698.1| DNA-directed RNA polymerase subunit A' [Thermofilum pendens Hrk 5]
gi|119524323|gb|ABL77695.1| DNA-directed RNA polymerase, subunit A' [Thermofilum pendens Hrk 5]
Length = 888
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 88/142 (61%), Gaps = 5/142 (3%)
Query: 476 LQNSWHELQYNVDLLMDAKLN---INKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFA 532
+++ W+ LQ++V D +L + + L Q L GK G R ++ GKRV+F+
Sbjct: 266 IEDLWNLLQFHVATYFDNELPGIPPARHRSGRPLRTLAQRLKGKEGRFRGSLAGKRVDFS 325
Query: 533 GRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
R+VI+PDP L+I+ +GVP++ AK LT P VTPWN+ LRK+VINGP+V+PGAN I
Sbjct: 326 SRTVISPDPNLSINEVGVPIDVAKVLTVPEKVTPWNIEKLRKLVINGPDVWPGANYIIKP 385
Query: 593 DGSVVRISSSQAVQRESLAKRL 614
DGS RI RE +++ L
Sbjct: 386 DGS--RIDLRYVKHREEISQTL 405
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/84 (52%), Positives = 58/84 (69%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L+I+ +GVP++ AK LT P VTPWN+ LRK+VINGP+V+PGAN I
Sbjct: 324 FSSRTVISPDPNLSINEVGVPIDVAKVLTVPEKVTPWNIEKLRKLVINGPDVWPGANYII 383
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
DGS RI RE +++ L
Sbjct: 384 KPDGS--RIDLRYVKHREEISQTL 405
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
+K + + +++++V+++ + ++ G IPGGL D MG I E G C TCGN +T
Sbjct: 13 IKFGILSPEMIRKIAVLRIETSELYDEEGFPIPGGLMDRRMGSI-EPGAVCQTCGNRFTN 71
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIP 223
C GH G+IEL PVI+ F + +LLK +C C ++ +P
Sbjct: 72 CPGHFGYIELARPVIHPSFAPYIAILLKATCNRCGRLKLP 111
>gi|297527624|ref|YP_003669648.1| DNA-directed RNA polymerase subunit A' [Staphylothermus hellenicus
DSM 12710]
gi|297256540|gb|ADI32749.1| DNA-directed RNA polymerase subunit A' [Staphylothermus hellenicus
DSM 12710]
Length = 886
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 86/260 (33%), Positives = 130/260 (50%), Gaps = 33/260 (12%)
Query: 360 EQGYVMAS--EVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRP 417
E+GYV + EV A +K+ +E + L PV D E M + L VPP ++RP
Sbjct: 174 EEGYVKLNPIEVRARLEKI-LDEDVRLLGGDPV-DARPEW-----MVLTVLPVPPRSVRP 226
Query: 418 LSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQ 477
SIL G + K + + + + I N ++
Sbjct: 227 ------------------SILLETGIRSEDDLTHKLVDIIRINNRLREHIESGAPNAIIE 268
Query: 478 NSWHELQYNVDLLMDAK---LNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGR 534
+ W LQY+V D + + + + + GL Q L GK G R N+ GKRV+F+ R
Sbjct: 269 DEWELLQYHVTTYFDNEAPGIPVARHRSGKVLKGLAQRLKGKEGRFRGNLRGKRVDFSAR 328
Query: 535 SVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDG 594
+VI+PDP L+I+ +GVP AK LT P VTPWN+ +R++V+NGP+ +PGAN + DG
Sbjct: 329 TVISPDPNLSINEVGVPEVVAKILTVPERVTPWNIEEMRRLVLNGPDKWPGANYVIRPDG 388
Query: 595 SVVRISSSQAVQRESLAKRL 614
R S + V R+++A+ L
Sbjct: 389 ---RRISLKYVDRKAMAETL 405
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 8/139 (5%)
Query: 109 MKEKIITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPIS 168
MK I TR + K + +E++++SV + + +++ G I GG+ D +G I
Sbjct: 1 MKTPIPTRISAI----KFGILSPEEIRKMSVTTIITSEVYDNDGAPIDGGVMDRRLGAIE 56
Query: 169 ERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQ- 227
R + C CGN C GH GHIEL PVI+ F + + + LK +C +C +I I +
Sbjct: 57 PR-EVCPVCGNTRESCPGHFGHIELARPVIHVSFVKHIHMYLKTTCRVCGRIKIKEEERK 115
Query: 228 --LLFINQIKLLDAGYVTQ 244
L +N +K L Y+ +
Sbjct: 116 KYLELLNSLKELGLDYLVK 134
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 57/84 (67%), Gaps = 3/84 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L+I+ +GVP AK LT P VTPWN+ +R++V+NGP+ +PGAN +
Sbjct: 325 FSARTVISPDPNLSINEVGVPEVVAKILTVPERVTPWNIEEMRRLVLNGPDKWPGANYVI 384
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
DG R S + V R+++A+ L
Sbjct: 385 RPDG---RRISLKYVDRKAMAETL 405
>gi|449016275|dbj|BAM79677.1| RNA polymerase III largest subunit [Cyanidioschyzon merolae strain
10D]
Length = 1930
Score = 117 bits (292), Expect = 3e-23, Method: Composition-based stats.
Identities = 78/205 (38%), Positives = 108/205 (52%), Gaps = 22/205 (10%)
Query: 392 DTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAM 451
DTT+ + M +R + VPP +RP S+ P + + L IM
Sbjct: 522 DTTR----PEDMLLRCVAVPPVCIRP-SVCNDPSQGSTEDDL-------------TIMLA 563
Query: 452 KNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQID-GLK 510
+ L+ E L ++G L KL ++W LQ V + A + ++ GL
Sbjct: 564 DIAGANALVMEQL--VKGSDLG-KLLDAWDHLQLAVARYIHADYPGLPASLYYKAQIGLC 620
Query: 511 QMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVT 570
Q L GK G R N+ GKRV+F+ R+VI+PDP L+ID +GVPL AK LTYP VTPWN+
Sbjct: 621 QRLKGKQGRFRGNLSGKRVDFSARTVISPDPNLSIDQVGVPLRIAKILTYPERVTPWNID 680
Query: 571 LLRKMVINGPNVYPGANMIQNEDGS 595
LRK V+ GP+ +PGAN + DGS
Sbjct: 681 QLRKSVLRGPDRHPGANYVLFPDGS 705
Score = 86.3 bits (212), Expect = 5e-14, Method: Composition-based stats.
Identities = 38/65 (58%), Positives = 47/65 (72%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L+ID +GVPL AK LTYP VTPWN+ LRK V+ GP+ +PGAN +
Sbjct: 641 FSARTVISPDPNLSIDQVGVPLRIAKILTYPERVTPWNIDQLRKSVLRGPDRHPGANYVL 700
Query: 74 NEDGS 78
DGS
Sbjct: 701 FPDGS 705
Score = 55.8 bits (133), Expect = 7e-05, Method: Composition-based stats.
Identities = 47/204 (23%), Positives = 87/204 (42%), Gaps = 29/204 (14%)
Query: 88 VQRESLAK--RLITPEDQQHRAIMKEKIITRQEV-----VPEILKLKYYTDQEVKQLSVV 140
V R + A+ RL+ +Q RA+ + R + E ++ + + ++++ SV+
Sbjct: 132 VYRTTYAQIHRLLLEREQARRALSARPVTLRDDTQVLSRSLEAIQFRIPSVDDIRRASVI 191
Query: 141 KVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINT 200
++ + +P G D +G +S++ + C TCG + C GH GHIEL +PV +
Sbjct: 192 EMNRKQLYTPEHDIVPHGALDKHLG-VSDKNERCATCGLSLADCAGHFGHIELVLPVFHV 250
Query: 201 LFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRL 260
+ + +L+ C C + L DA +V + + E R
Sbjct: 251 GYLSFLLQVLQCICKRCSGL---------------LADAQFVEHLRHQQR----EHRARN 291
Query: 261 HPAQLVQLVDSHVQSILAHGTKIC 284
P L L+ H++ A + IC
Sbjct: 292 TPGYLQSLLKRHLE--WAKRSSIC 313
>gi|169780898|ref|XP_001824913.1| DNA-directed RNA polymerase III subunit RPO31 [Aspergillus oryzae
RIB40]
gi|83773653|dbj|BAE63780.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391867224|gb|EIT76474.1| RNA polymerase III, large subunit [Aspergillus oryzae 3.042]
Length = 1447
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 127/495 (25%), Positives = 204/495 (41%), Gaps = 87/495 (17%)
Query: 110 KEKIITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGH---TIPGGLYDLAMGP 166
K ++I R V + LK ++ ++ VV+V S F L + G D MG
Sbjct: 13 KAQVIDRAPKVIKELKFGVLSNDDIVSQGVVEV-SDRKFFDLDRDRSVVAHGPLDSRMG- 70
Query: 167 ISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATS 226
+S + C TCG C GH GH++L +P + +F+ V +L+ C C I +P
Sbjct: 71 VSSKTASCQTCGGALQVCNGHFGHVKLVLPSFHVGYFKRVITILQEICKECSHILLPEGE 130
Query: 227 QLLFINQIKL--LDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKIC 284
+ F+ +++ LD NLR Q+ + ++ + T+ C
Sbjct: 131 RRAFLREMRRPGLD------------------NLRR--LQIAKRINERCRK-----TRNC 165
Query: 285 DINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSL 344
D G ++ A + + H K + +T + I + + D+S
Sbjct: 166 DRCGATNGV-VKKAGTSALKITHDKFRAFNASTSMKKIPPPSKIV----------FDRSF 214
Query: 345 DKSLNKSSNQIIRKREQGYVMASEVEADFKKLWT--NEHLFLKCLIPVLDTTKELIATD- 401
+++ +S N EVE KK N L + DT EL+ D
Sbjct: 215 EEA--RSHN-------------PEVEKHHKKAQDDMNALRVLNLFKRISDTDCELLGLDP 259
Query: 402 -----IMFIRSLV-VPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKE 455
MF+ + PP +RP + E I+ S +LK+ +
Sbjct: 260 KEARPEMFLWQYIPAPPVCIRPSVGQDASSTEDDLTAKLGDIVQSNINLKNAL------- 312
Query: 456 QSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKL-NINKTTGAHQIDGLKQMLD 514
LKG T+ W +Q + + +++ + +NK I G Q L
Sbjct: 313 --------LKGAPVQTI----MECWDYMQLQIAVYINSDVPGLNKADLGKPIRGFVQRLK 360
Query: 515 GKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRK 574
GK G R N+ GKRV+F+GR+VI+PDP L +D + VP AK +TYP VT +N L++
Sbjct: 361 GKQGRFRGNLSGKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQ 420
Query: 575 MVINGPNVYPGANMI 589
V NG +PGAN +
Sbjct: 421 RVRNGTKKWPGANYL 435
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 37/59 (62%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 72
F R+VI+PDP L +D + VP AK +TYP VT +N L++ V NG +PGAN +
Sbjct: 377 FSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQRVRNGTKKWPGANYL 435
>gi|300122349|emb|CBK22921.2| unnamed protein product [Blastocystis hominis]
Length = 1576
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 116/452 (25%), Positives = 181/452 (40%), Gaps = 95/452 (21%)
Query: 155 IPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSC 214
+P G+ D +G +S + + C TCG N C GH G I L +PV + + + +L+ C
Sbjct: 23 MPNGVLDRRLG-VSSKSEICQTCGKNIATCPGHFGTIHLVMPVFHIGYINMIIGILRSIC 81
Query: 215 FLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQL-VQLVDSHV 273
C + + + ++ + N LH Q Q++D
Sbjct: 82 KKCGRCLLSYEDREHYLRK------------------FLNPYTDVLHKRQYNKQVID--- 120
Query: 274 QSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSF 333
L C GE + A + H+ P N ++ ++++ I
Sbjct: 121 ---LCRKVYECPYCHAVNGEVKKIPGTASIRIEHI--------LPPNKLTEEEQRAIHDS 169
Query: 334 KIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDT 393
+ L ++++ + ++V D KL +E L L + +
Sbjct: 170 FASACKYNADLHSYIDRAHED----------LTAQVVLDLFKLIPSEDLPLLWINELSGR 219
Query: 394 TKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKN 453
+ L+ TDI +VPP +RP SV+M N
Sbjct: 220 PENLLLTDI------IVPPVTIRP----------------------------SVVMESTN 245
Query: 454 KEQSDLLSEALKGIRGDTLNNKLQNS-------------WHELQYNVDLLMDAKLNINKT 500
D ++ L+ I N++LQ S W LQ L++ L T
Sbjct: 246 GSNEDDITMILQDI--TRTNSQLQQSINNGASMRIIMDNWDHLQILCAELINGDLPGIST 303
Query: 501 TGAHQI--DGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTL 558
+ L Q L GK G R N+ GKRV F+GR+VI+PDP L+I+ +GVP+ A L
Sbjct: 304 LVKSAVPKRSLVQRLKGKQGRFRGNLSGKRVEFSGRTVISPDPNLSIEEVGVPIFVAMKL 363
Query: 559 TYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 590
TYP VT +N+ LR MV NG + YPGANMI+
Sbjct: 364 TYPERVTAFNIERLRGMVRNGASRYPGANMIR 395
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 43/60 (71%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L+I+ +GVP+ A LTYP VT +N+ LR MV NG + YPGANMI+
Sbjct: 336 FSGRTVISPDPNLSIEEVGVPIFVAMKLTYPERVTAFNIERLRGMVRNGASRYPGANMIR 395
>gi|225459758|ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
vinifera]
Length = 1848
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 128/470 (27%), Positives = 201/470 (42%), Gaps = 81/470 (17%)
Query: 133 EVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIE 192
E++Q+SVV++ T G PGGL D +G I +R C TC N +C GH GH+E
Sbjct: 27 EIRQMSVVQIEHSET-TERGKPKPGGLSDPRLGTI-DRKMKCETCTANMAECPGHFGHLE 84
Query: 193 LPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETL 252
L P+ + F + V LS C N + L
Sbjct: 85 LAKPMFHIGFMKTV-----LSIMRCVCFNC--------------------------SKIL 113
Query: 253 FNEENLRLHPAQLVQLVDSHVQSILAHGTKIC-DINDYKGGEELRSAFVAQVLSRHVKRK 311
+EE+ + AQ ++ + ++ IL C + + +GG+E+ + + VK+
Sbjct: 114 ADEEDHKFKQAQKIRNPKNRLKKIL----DACKNKSKCEGGDEIETQALDS--DEPVKKS 167
Query: 312 CIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVEA 371
C ++ + K+I +KI + N Q+ E+ +++E
Sbjct: 168 RGGCGAQQPKLTIEGMKMIAEYKIQRKK---------NDDPEQLPEPVERKQQLSAERVL 218
Query: 372 DFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRN 431
+ K ++E L L P + D M ++ L +PP +RP M M S +
Sbjct: 219 NVLKRISDEDCILLGLNP------KYARPDWMILQVLPIPPPPVRPSVM--MDTSSRSED 270
Query: 432 KLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLM 491
L +AM + +L + G ++ Q LQ++V
Sbjct: 271 DLTHQ------------LAMIIRHNENLRRQERNGAPAHIISEFAQ----LLQFHVATYF 314
Query: 492 DAKL----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDS 547
D +L + +G I + L K G IR N+MGKRV+F+ R+VITPDP +NID
Sbjct: 315 DNELPGQPRATQRSG-RPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDE 373
Query: 548 IGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYP---GANMIQNEDG 594
+GVP A LTYP VTP+N+ L+++V GP+ P GA I EDG
Sbjct: 374 LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDG 423
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 43/67 (64%), Gaps = 3/67 (4%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYP---GAN 70
F R+VITPDP +NID +GVP A LTYP VTP+N+ L+++V GP+ P GA
Sbjct: 357 FSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAK 416
Query: 71 MIQNEDG 77
I EDG
Sbjct: 417 YIIREDG 423
>gi|348676845|gb|EGZ16662.1| hypothetical protein PHYSODRAFT_500633 [Phytophthora sojae]
Length = 1532
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 63/127 (49%), Positives = 83/127 (65%), Gaps = 3/127 (2%)
Query: 468 RGDTLNNKLQNSWHELQYNVDLLMDAKL-NINKTTGAHQ-IDGLKQMLDGKTGMIRQNMM 525
+G +L +++ W LQ V LM+ + K GA I GL Q L GK G R N+
Sbjct: 309 KGASLKMVMED-WDFLQIQVAQLMNGDTPGLVKPPGAKSGIRGLCQRLKGKQGRFRGNLS 367
Query: 526 GKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPG 585
GKRV+F+GR+VI+PDP L ID +GVP AKT+TYP VT +N+ LRK V+NGPNV+PG
Sbjct: 368 GKRVDFSGRTVISPDPNLRIDQVGVPEHVAKTMTYPEKVTRYNIEKLRKCVVNGPNVHPG 427
Query: 586 ANMIQNE 592
AN+I+ E
Sbjct: 428 ANIIRIE 434
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/62 (59%), Positives = 47/62 (75%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID +GVP AKT+TYP VT +N+ LRK V+NGPNV+PGAN+I+
Sbjct: 373 FSGRTVISPDPNLRIDQVGVPEHVAKTMTYPEKVTRYNIEKLRKCVVNGPNVHPGANIIR 432
Query: 74 NE 75
E
Sbjct: 433 IE 434
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 56/113 (49%), Gaps = 2/113 (1%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFN-SLGHTIPGGLYDLAMGPISERGDPCTTCGNNYT 182
L +D ++ Q+S ++V S F G+ D +G +S + D C TC
Sbjct: 29 LNFGLLSDVDMMQMSELRVHSKDLFKVQTREPAADGVLDKRLG-VSNKKDTCDTCHLKLA 87
Query: 183 KCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
C GH G+I+L +PV + +F+ + +L+ C C ++ +P + F+ +++
Sbjct: 88 DCVGHFGYIKLELPVFHIGYFKAITEILQNICKSCSRVLLPPAERETFLRRMR 140
>gi|19112298|ref|NP_595506.1| DNA-directed RNA polymerase III complex large subunit Rpc1
(predicted) [Schizosaccharomyces pombe 972h-]
gi|9297042|sp|O94666.1|RPC1_SCHPO RecName: Full=DNA-directed RNA polymerase III subunit rpc1;
Short=RNA polymerase III subunit C1; AltName:
Full=DNA-directed RNA polymerase III largest subunit;
AltName: Full=RPC158
gi|4467280|emb|CAB37604.1| DNA-directed RNA polymerase III complex large subunit Rpc1
(predicted) [Schizosaccharomyces pombe]
gi|76782169|gb|ABA54855.1| RNA polymerase III largest subunit Rpc1 [Schizosaccharomyces pombe]
Length = 1405
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 114/448 (25%), Positives = 193/448 (43%), Gaps = 79/448 (17%)
Query: 158 GLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLC 217
G DL MG S + C TCG + C GH G+++L +PV + +F+ +L+ C C
Sbjct: 51 GALDLHMG-TSNKQINCATCGESMADCMGHFGYVKLALPVFHIGYFKATLTILQNICKDC 109
Query: 218 HKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSIL 277
+ + + F+ KDL +NLR +Q+ + ++ H +
Sbjct: 110 SSVLLSDQEKRQFL--------------KDLRRPGI--DNLRR--SQICKRINDHCK--- 148
Query: 278 AHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDK 337
++R + VK+ A P+ I + R + KS + D+
Sbjct: 149 ----------------KMRRCSKCDAMQGVVKK-----AGPLKIIHERFRYVRKS-QDDE 186
Query: 338 DNLDQSLDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPV----LDT 393
+N S D++L + + + S+ D L +LF K + PV L
Sbjct: 187 ENFRHSFDEAL--------KTIPELKMHLSKAHDDLNPLKV-LNLF-KQITPVDCELLGM 236
Query: 394 TKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKN 453
E + + R + PP +RP ++ E I+++
Sbjct: 237 DPEHGRPENLLWRYVPAPPVCIRPSVAQEGATTEDDLTVKITEIIWT------------- 283
Query: 454 KEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTG--AHQIDGLKQ 511
S L+ AL +G ++N L W +Q ++ + +++++ + + + I G Q
Sbjct: 284 ---SSLIRAALS--KGTPISN-LMEQWEFMQLSIAMYINSEMPGLRPSDMPSKPIRGFCQ 337
Query: 512 MLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTL 571
L GK G R N+ GKRV+F+GR+VI+PDP L ID + VP AK LT+P VT N
Sbjct: 338 RLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDQVAVPYRIAKILTFPERVTTQNKKH 397
Query: 572 LRKMVINGPNVYPGANMIQNEDGSVVRI 599
L+ + NGP+V+PGAN + + + R
Sbjct: 398 LQDCIRNGPDVHPGANYVIDRESGFKRF 425
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 41/69 (59%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP AK LT+P VT N L+ + NGP+V+PGAN +
Sbjct: 357 FSGRTVISPDPNLRIDQVAVPYRIAKILTFPERVTTQNKKHLQDCIRNGPDVHPGANYVI 416
Query: 74 NEDGSVVRI 82
+ + R
Sbjct: 417 DRESGFKRF 425
>gi|126460695|ref|YP_001056973.1| DNA-directed RNA polymerase subunit A' [Pyrobaculum calidifontis
JCM 11548]
gi|126250416|gb|ABO09507.1| DNA-directed RNA polymerase, subunit A' [Pyrobaculum calidifontis
JCM 11548]
Length = 884
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 85/145 (58%), Gaps = 5/145 (3%)
Query: 473 NNKLQNSWHELQYNVDLLMDAKLN---INKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRV 529
N + N W LQY+V D +L + K G + G+ Q L GK G R ++ KRV
Sbjct: 269 TNVVDNLWDLLQYHVATYFDNELPGIPVAKHRGGRPLKGIAQRLKGKEGRFRGSLSSKRV 328
Query: 530 NFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 589
NF+ R+VI+PDP+++I+ +GVP++ AK LT P VT WN+ LR+ V+ GP +PGAN +
Sbjct: 329 NFSARTVISPDPHISINEVGVPIDIAKVLTVPERVTTWNIDALREYVLRGPEAWPGANYV 388
Query: 590 QNEDGSVVRISSSQAVQRESLAKRL 614
+G RI R +LA+RL
Sbjct: 389 ITPEGR--RIDLRYVKDRRALAERL 411
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 54/84 (64%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP+++I+ +GVP++ AK LT P VT WN+ LR+ V+ GP +PGAN +
Sbjct: 330 FSARTVISPDPHISINEVGVPIDIAKVLTVPERVTTWNIDALREYVLRGPEAWPGANYVI 389
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+G RI R +LA+RL
Sbjct: 390 TPEGR--RIDLRYVKDRRALAERL 411
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 64/119 (53%), Gaps = 1/119 (0%)
Query: 134 VKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIEL 193
+++ SV++V + ++ G + GG+ D +G +SE G C TCG + C GH GHIEL
Sbjct: 28 IRKYSVMEVTTSEVYDEGGLPVRGGIADRRLG-VSEPGARCETCGQTHDVCPGHFGHIEL 86
Query: 194 PVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETL 252
PVI+ + R + +L+ +C C +I + + ++ L + A++L+E +
Sbjct: 87 VKPVIHVGYARIIYDVLRATCPNCGRIMLKDEEIKRYKERLDRLKGRWRLLAQNLQEKI 145
>gi|296243131|ref|YP_003650618.1| DNA-directed RNA polymerase subunit A' [Thermosphaera aggregans DSM
11486]
gi|296095715|gb|ADG91666.1| DNA-directed RNA polymerase, subunit A' [Thermosphaera aggregans
DSM 11486]
Length = 881
Score = 115 bits (289), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 130/282 (46%), Gaps = 49/282 (17%)
Query: 351 SSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIP-----VLDTTKELIATDIMFI 405
+ Q K ++ + + E +KLW + IP +L E + M +
Sbjct: 150 GAKQYRYKLDKPHSFYEQKETGLEKLWPTDIRVRLEKIPDEDVRLLGGNPEEARPEWMVL 209
Query: 406 RSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALK 465
L VPP +RP SV++ + + DL + +
Sbjct: 210 TVLPVPPRTVRP----------------------------SVLLETGIRSEDDLTHKLVD 241
Query: 466 GIRGDTLNNK----------LQNSWHELQYNVDLLMDAK---LNINKTTGAHQIDGLKQM 512
IR +T + +++ W LQY++ D + + + K + G+ Q
Sbjct: 242 IIRVNTRLKEHVESGAPSAIVEDEWELLQYHITTYFDNEAPGIPVAKHRSGKTLKGIAQR 301
Query: 513 LDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLL 572
L GK G R N+ GKRV+F+ R+V++PDP L+I+ +GVP AK LT P VTPWN+ +
Sbjct: 302 LKGKEGRFRGNLRGKRVDFSARTVVSPDPNLSINEVGVPEMVAKILTIPEKVTPWNIEEM 361
Query: 573 RKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRL 614
RK+V+NGP+ +PGAN I DG R S + V R++ A+ L
Sbjct: 362 RKLVLNGPDKWPGANYIVRPDG---RKISLKYVDRKAAAESL 400
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
++ + +E+++LSV ++ + +++ G I GG+ D +G I E G+ C CGN
Sbjct: 8 IRFGLLSPEEIRKLSVTQIITSDVYDNDGAPIDGGVMDKRLGAI-EPGETCPVCGNTRDS 66
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLD 238
C GH GHIEL PVI+ F + + + LK +C C +I IP + ++ +K L+
Sbjct: 67 CPGHFGHIELTKPVIHAGFAKHILMYLKATCRECGRIKIPEKERQEYLALMKELE 121
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 56/84 (66%), Gaps = 3/84 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+V++PDP L+I+ +GVP AK LT P VTPWN+ +RK+V+NGP+ +PGAN I
Sbjct: 320 FSARTVVSPDPNLSINEVGVPEMVAKILTIPEKVTPWNIEEMRKLVLNGPDKWPGANYIV 379
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
DG R S + V R++ A+ L
Sbjct: 380 RPDG---RKISLKYVDRKAAAESL 400
>gi|347522775|ref|YP_004780345.1| DNA-directed RNA polymerase subunit A' [Pyrolobus fumarii 1A]
gi|343459657|gb|AEM38093.1| DNA-directed RNA polymerase subunit A' [Pyrolobus fumarii 1A]
Length = 882
Score = 115 bits (288), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 88/140 (62%), Gaps = 8/140 (5%)
Query: 480 WHELQYNVDLLMD---AKLNINKTTGA--HQIDGLKQMLDGKTGMIRQNMMGKRVNFAGR 534
W+ LQY+V +D K+ + + G + GL Q L GK G R N+ GKRVNF+ R
Sbjct: 267 WNLLQYHVATYIDNELPKIPVARQRGGLGRPLKGLAQRLKGKEGRFRGNLSGKRVNFSAR 326
Query: 535 SVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDG 594
+VI+PDP ++I+ +GVP+E AK LT V VTPWN+ LRK VINGP+ +PGAN + + G
Sbjct: 327 TVISPDPNISINEVGVPIEIAKILTVAVRVTPWNIEELRKYVINGPDKWPGANYVIDPRG 386
Query: 595 SVVRISSSQAVQRESLAKRL 614
+ + + R+S+A+ L
Sbjct: 387 RKIDL---RFADRKSIAEAL 403
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 73/135 (54%), Gaps = 2/135 (1%)
Query: 114 ITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDP 173
+ ++++ EI K + E++++SVV + + ++ G IPGGL D +G + G
Sbjct: 1 MVEEKIIKEI-KFGILSPDEIRKMSVVAITTDQLYDPDGRPIPGGLMDPRLG-AAIPGQR 58
Query: 174 CTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQ 233
C TCGN+Y C GH G IEL +PVIN F R + +L+ +C C +I +P ++
Sbjct: 59 CETCGNDYRLCPGHFGRIELALPVINVGFARHIYEILRATCRNCGRIKLPERELKRYLKL 118
Query: 234 IKLLDAGYVTQAKDL 248
++ L + AK L
Sbjct: 119 LERLKNKWPLLAKAL 133
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 57/84 (67%), Gaps = 3/84 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP ++I+ +GVP+E AK LT V VTPWN+ LRK VINGP+ +PGAN +
Sbjct: 323 FSARTVISPDPNISINEVGVPIEIAKILTVAVRVTPWNIEELRKYVINGPDKWPGANYVI 382
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ G + + + R+S+A+ L
Sbjct: 383 DPRGRKIDL---RFADRKSIAEAL 403
>gi|305663642|ref|YP_003859930.1| DNA-directed RNA polymerase, subunit A' [Ignisphaera aggregans DSM
17230]
gi|304378211|gb|ADM28050.1| DNA-directed RNA polymerase, subunit A' [Ignisphaera aggregans DSM
17230]
Length = 884
Score = 115 bits (288), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 86/142 (60%), Gaps = 5/142 (3%)
Query: 476 LQNSWHELQYNVDLLMDAK---LNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFA 532
+ + W LQY+V +D + L K + L Q L GK G R N+ GKRV+++
Sbjct: 266 IDDLWELLQYHVTTYLDNEVPGLPPAKHRSGRPLKTLAQRLKGKEGRFRGNLSGKRVDYS 325
Query: 533 GRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
R+VI+P+PYL+I+ +GVP++ AK LT P VT WN+ +RK+VINGPN +PGAN I
Sbjct: 326 ARTVISPEPYLSINEVGVPIDVAKILTVPEKVTEWNIEEMRKLVINGPNRWPGANYIITP 385
Query: 593 DGSVVRISSSQAVQRESLAKRL 614
DG RI R+S+A+ L
Sbjct: 386 DGR--RIDLRYVKDRKSVAESL 405
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 73/134 (54%), Gaps = 1/134 (0%)
Query: 117 QEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTT 176
+E V + +K + E++++SVV++ SP T++ G I G + D +G I E G C
Sbjct: 4 EEKVIKGIKFGILSPDEIRRMSVVQIVSPETYDEDGTPISGSVMDPRLGAI-EPGQTCPI 62
Query: 177 CGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKL 236
CGN C GH GHIEL +PVIN L+ + + LL+ +C C +I + + ++ ++
Sbjct: 63 CGNTMKACPGHFGHIELALPVINVLYVKHIYDLLRATCANCGRIKVSPSEIEKYMVYLRK 122
Query: 237 LDAGYVTQAKDLEE 250
L A Y AK E
Sbjct: 123 LKARYPYLAKRFSE 136
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 57/84 (67%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ R+VI+P+PYL+I+ +GVP++ AK LT P VT WN+ +RK+VINGPN +PGAN I
Sbjct: 324 YSARTVISPEPYLSINEVGVPIDVAKILTVPEKVTEWNIEEMRKLVINGPNRWPGANYII 383
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
DG RI R+S+A+ L
Sbjct: 384 TPDGR--RIDLRYVKDRKSVAESL 405
>gi|126465703|ref|YP_001040812.1| DNA-directed RNA polymerase subunit A' [Staphylothermus marinus F1]
gi|126014526|gb|ABN69904.1| DNA-directed RNA polymerase, subunit A' [Staphylothermus marinus
F1]
Length = 886
Score = 115 bits (288), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 126/265 (47%), Gaps = 43/265 (16%)
Query: 360 EQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATD-------IMFIRSLVVPP 412
E+GYV + +E + L +LD L+ D M + L VPP
Sbjct: 174 EEGYVKLNPIEVRAR------------LEKILDEDVRLLGGDPIDARPEWMVLTVLPVPP 221
Query: 413 NNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTL 472
++RP SIL G + K + + + + I
Sbjct: 222 RSVRP------------------SILLETGIRSEDDLTHKLVDIIRINNRLREHIESGAP 263
Query: 473 NNKLQNSWHELQYNVDLLMDAK---LNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRV 529
N +++ W LQY+V D + + + + + GL Q L GK G R N+ GKRV
Sbjct: 264 NAIIEDEWELLQYHVTTYFDNEAPGIPVARHRSGKVLKGLAQRLKGKEGRFRGNLRGKRV 323
Query: 530 NFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 589
+F+ R+VI+PDP ++I+ +GVP AK LT P VTPWN+ +R++V+NGP+ +PGAN +
Sbjct: 324 DFSARTVISPDPNISINEVGVPEVVAKILTVPERVTPWNIEEMRRLVLNGPDKWPGANYV 383
Query: 590 QNEDGSVVRISSSQAVQRESLAKRL 614
DG R S + V R+++A+ L
Sbjct: 384 IRPDG---RRISLKYVDRKAMAETL 405
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 4/124 (3%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
+K + +E++++SV + + +++ G I GG+ D +G I R + C CGN
Sbjct: 12 IKFGILSPEEIRKMSVTTIITSEVYDNDGAPIDGGVMDRRLGAIEPR-EVCPVCGNTRES 70
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQ---LLFINQIKLLDAG 240
C GH GHIEL PVI+ F + + + LK +C +C +I I + L +N +K L
Sbjct: 71 CPGHFGHIELARPVIHVSFVKHIHMYLKTTCRVCGRIKIKEDERKRYLELLNSLKELGLE 130
Query: 241 YVTQ 244
Y+ +
Sbjct: 131 YLVK 134
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 57/84 (67%), Gaps = 3/84 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP ++I+ +GVP AK LT P VTPWN+ +R++V+NGP+ +PGAN +
Sbjct: 325 FSARTVISPDPNISINEVGVPEVVAKILTVPERVTPWNIEEMRRLVLNGPDKWPGANYVI 384
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
DG R S + V R+++A+ L
Sbjct: 385 RPDG---RRISLKYVDRKAMAETL 405
>gi|320101549|ref|YP_004177141.1| DNA-directed RNA polymerase subunit A' [Desulfurococcus mucosus DSM
2162]
gi|319753901|gb|ADV65659.1| DNA-directed RNA polymerase, subunit A' [Desulfurococcus mucosus
DSM 2162]
Length = 885
Score = 115 bits (287), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 90/151 (59%), Gaps = 6/151 (3%)
Query: 467 IRGDTLNNKLQNSWHELQYNVDLLMDAK---LNINKTTGAHQIDGLKQMLDGKTGMIRQN 523
+ G + +++ W LQY+V D + + + K + G+ Q L GK G R N
Sbjct: 257 VEGGAPSAIIEDEWELLQYHVTTYFDNEAPGIPVAKHRSGKTLKGIAQRLKGKEGRFRNN 316
Query: 524 MMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVY 583
+ GKRV+F+ R+V++PDP L+I+ +GVP + A+ LT P VTPWN+ +R++V+NGP +
Sbjct: 317 LRGKRVDFSARTVVSPDPSLSINEVGVPEDVARILTVPERVTPWNIEEMRRLVLNGPEKW 376
Query: 584 PGANMIQNEDGSVVRISSSQAVQRESLAKRL 614
PGAN + DG R S + V R++ A+ L
Sbjct: 377 PGANYVVRPDG---RKISLKFVDRKAAAEAL 404
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 68/124 (54%), Gaps = 4/124 (3%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
+K + E++++SV ++FS +++ G I GG+ D +G I E G+ C CGN
Sbjct: 12 VKFGILSPDEIRKMSVTQIFSAEVYDNDGSPIDGGVMDRRLGAI-EPGEACPICGNTRDS 70
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQ---LLFINQIKLLDAG 240
C GH GHIEL PVI+ F + + + L+ +C C ++ IP + L ++ + L A
Sbjct: 71 CPGHFGHIELAKPVIHVGFVKHILMYLRATCRNCGRLKIPEEERNEYLRLLSDLHELGAP 130
Query: 241 YVTQ 244
Y+ +
Sbjct: 131 YLIK 134
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 56/84 (66%), Gaps = 3/84 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+V++PDP L+I+ +GVP + A+ LT P VTPWN+ +R++V+NGP +PGAN +
Sbjct: 324 FSARTVVSPDPSLSINEVGVPEDVARILTVPERVTPWNIEEMRRLVLNGPEKWPGANYVV 383
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
DG R S + V R++ A+ L
Sbjct: 384 RPDG---RKISLKFVDRKAAAEAL 404
>gi|451927572|gb|AGF85450.1| directed RNA polymerase (II) subunit 1 [Moumouvirus goulette]
Length = 1493
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 125/475 (26%), Positives = 198/475 (41%), Gaps = 104/475 (21%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHT---IPGGLYDLAMGPISERGDPCTTCGNNYTKCK 185
Y++ +V + S + + IT + + I GG+ D +G ++E C TCG KC
Sbjct: 26 YSNTDVVKYSAISDPNGITVAEIQNNNEPIQGGVIDRRLG-VTESRTECATCGETALKCP 84
Query: 186 GHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQA 245
GH GHI+ PV +T F V+ +L C C+ KLL
Sbjct: 85 GHFGHIKFVEPVFHTGFLPFVKNILSCVCIRCN----------------KLL-------- 120
Query: 246 KDLEETLFNEENLRLHPAQLVQLV-DSHVQSILAHGTKICDINDYKGGEELRSAFVAQVL 304
+ + A + +L+ + H + A IC KG
Sbjct: 121 ------------VHRNEAAIDRLLKNKHGKQRFAEIRSIC-----KG------------- 150
Query: 305 SRHVKRKCIFCATPINAISYQQRK-----IIKSFKIDKDNLDQSLDKSLNKSSNQIIRKR 359
H ++ C TP++ IS ++R + + K + DQ+ L K S QI
Sbjct: 151 ITHCQKDGYGCGTPVHKISIEKRNCSIYLLAEPVKRSDEYDDQT--GELRKRSPQI---- 204
Query: 360 EQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRP-L 418
++ ++ D K +NE C++ D K + M I + VPP +RP +
Sbjct: 205 -----LSPQLCYDILKSVSNED----CIVMGFDPEKS--RPEDMIIVNFPVPPVQVRPSI 253
Query: 419 SMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDT--LNNKL 476
ME + + ++ ++ +KN E LK +GD + +
Sbjct: 254 KMEILSSSTVDDDLTHK-----------LVDIIKNNEN-------LKNSKGDGSLVKYNV 295
Query: 477 QNSWHELQYNVDLLM--DAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGR 534
+ + LQY+V D L + L L GK G IR N+MGKRV+ +GR
Sbjct: 296 NDDFMLLQYHVATFFANDGSLAKCQQKNKKLTKDLSSRLRGKEGRIRGNLMGKRVDMSGR 355
Query: 535 SVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 589
+VIT DP + ++ +G+PL AK LT+ VT N+ L ++V NG VYPGAN +
Sbjct: 356 TVITSDPNIALNEVGLPLIIAKNLTFDEIVTEHNIEYLSQLVKNGRRVYPGANFV 410
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 37/56 (66%)
Query: 17 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 72
R+VIT DP + ++ +G+PL AK LT+ VT N+ L ++V NG VYPGAN +
Sbjct: 355 RTVITSDPNIALNEVGLPLIIAKNLTFDEIVTEHNIEYLSQLVKNGRRVYPGANFV 410
>gi|389860841|ref|YP_006363081.1| DNA-directed RNA polymerase subunit A' [Thermogladius
cellulolyticus 1633]
gi|388525745|gb|AFK50943.1| DNA-directed RNA polymerase subunit A' [Thermogladius
cellulolyticus 1633]
Length = 880
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 89/150 (59%), Gaps = 16/150 (10%)
Query: 473 NNKLQNSWHELQYNVDLLMD--------AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNM 524
N +++ W LQY+V D AK KT + G+ Q L GK G R N+
Sbjct: 258 NALIEDEWELLQYHVTTYFDNEAPGIPQAKHRTGKT-----LKGIAQRLKGKEGRFRGNL 312
Query: 525 MGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYP 584
GKRV+F+ R+VI+PDP L+I+ +GVP AK LT P VTPWN+ +RK+V+NGP+ +P
Sbjct: 313 RGKRVDFSARTVISPDPNLSINEVGVPEVVAKVLTVPEKVTPWNIEEMRKLVLNGPDKWP 372
Query: 585 GANMIQNEDGSVVRISSSQAVQRESLAKRL 614
GAN + DG R S + V R+++A+ L
Sbjct: 373 GANYVIRPDG---RKISLKFVDRKAVAESL 399
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 57/84 (67%), Gaps = 3/84 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L+I+ +GVP AK LT P VTPWN+ +RK+V+NGP+ +PGAN +
Sbjct: 319 FSARTVISPDPNLSINEVGVPEVVAKVLTVPEKVTPWNIEEMRKLVLNGPDKWPGANYVI 378
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
DG R S + V R+++A+ L
Sbjct: 379 RPDG---RKISLKFVDRKAVAESL 399
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 60/107 (56%), Gaps = 1/107 (0%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
+K + E++++SV + + ++S G + GG+ D +G I + + C CGN +
Sbjct: 7 VKFGILSPDEIRRMSVTNIITSDVYDSDGAPVDGGVMDKRLGAIEPK-EVCPICGNTRDE 65
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLF 230
C GH GHIEL PVI+ F + + + LK +C +C ++ +P + L+
Sbjct: 66 CPGHFGHIELAKPVIHAGFAKHIHMYLKTTCRVCGRVKLPENERQLY 112
>gi|441432235|ref|YP_007354277.1| DNA directed RNA polymerase (II) subunit 1 [Acanthamoeba polyphaga
moumouvirus]
gi|440383315|gb|AGC01841.1| DNA directed RNA polymerase (II) subunit 1 [Acanthamoeba polyphaga
moumouvirus]
Length = 1504
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 124/480 (25%), Positives = 201/480 (41%), Gaps = 104/480 (21%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHT---IPGGLYDLAMGPISERGDPCTTCGNN 180
++ + Y++ +V + S + + IT + + + GG+ D +G ++E C TCG
Sbjct: 21 VEFRIYSNSDVVKYSAINDPNGITVAEIQNNNEPVQGGVIDRRLG-VTESRTECATCGET 79
Query: 181 YTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAG 240
KC GH GHI+ PV +T F V+ +L C C+ KLL
Sbjct: 80 ALKCPGHFGHIKFVEPVFHTGFLPFVKNILSCICIRCN----------------KLL--- 120
Query: 241 YVTQAKDLEETLFNEENLRLHPAQLVQLV-DSHVQSILAHGTKICDINDYKGGEELRSAF 299
+ + A + +L+ + H + A IC KG
Sbjct: 121 -----------------VHRNEAAIDRLLRNKHGKQRFAEIRSIC-----KG-------- 150
Query: 300 VAQVLSRHVKRKCIFCATPINAISYQQRK-----IIKSFKIDKDNLDQSLDKSLNKSSNQ 354
H ++ C TP++ IS ++R + + K + DQ+ L K S Q
Sbjct: 151 -----ITHCQKDGYGCGTPVHKISIEKRNCSIYLLAEPVKRSDEYDDQT--GELRKRSPQ 203
Query: 355 IIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNN 414
I ++ ++ D K +NE C++ D K + M I + VPP
Sbjct: 204 I---------LSPQLCYDILKSVSNE----DCIVMGFDPEKS--RPEDMIIVNFPVPPVQ 248
Query: 415 LRP-LSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDT-- 471
+RP + ME + + ++ ++ +KN E LK +GD
Sbjct: 249 VRPSIKMEILSSSTVDDDLTHK-----------LVDIIKNNEN-------LKNSKGDGSL 290
Query: 472 LNNKLQNSWHELQYNVDLLM--DAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRV 529
+ + + + LQY+V D L + L L GK G IR N+MGKRV
Sbjct: 291 VKYNVNDDFMLLQYHVATFFANDGSLAKCQQKNKKLTKDLSSRLRGKEGRIRGNLMGKRV 350
Query: 530 NFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 589
+ +GR+VIT DP + ++ +G+PL AK LT+ VT N+ L ++V NG VYPGAN +
Sbjct: 351 DMSGRTVITSDPNIALNEVGLPLIIAKNLTFDEIVTEHNIEYLTQLVKNGRRVYPGANFV 410
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 37/56 (66%)
Query: 17 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 72
R+VIT DP + ++ +G+PL AK LT+ VT N+ L ++V NG VYPGAN +
Sbjct: 355 RTVITSDPNIALNEVGLPLIIAKNLTFDEIVTEHNIEYLTQLVKNGRRVYPGANFV 410
>gi|371945115|gb|AEX62936.1| DNA-directed RNA polymerase subunit 1 [Moumouvirus Monve]
Length = 1504
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 124/480 (25%), Positives = 201/480 (41%), Gaps = 104/480 (21%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHT---IPGGLYDLAMGPISERGDPCTTCGNN 180
++ + Y++ +V + S + + IT + + + GG+ D +G ++E C TCG
Sbjct: 21 VEFRIYSNSDVVKYSAINDPNGITVAEIQNNNEPVQGGVIDRRLG-VTESRTECATCGET 79
Query: 181 YTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAG 240
KC GH GHI+ PV +T F V+ +L C C+ KLL
Sbjct: 80 ALKCPGHFGHIKFVEPVFHTGFLPFVKNILSCICIRCN----------------KLL--- 120
Query: 241 YVTQAKDLEETLFNEENLRLHPAQLVQLV-DSHVQSILAHGTKICDINDYKGGEELRSAF 299
+ + A + +L+ + H + A IC KG
Sbjct: 121 -----------------VHRNEAAIDRLLRNKHGKQRFAEIRSIC-----KG-------- 150
Query: 300 VAQVLSRHVKRKCIFCATPINAISYQQRK-----IIKSFKIDKDNLDQSLDKSLNKSSNQ 354
H ++ C TP++ IS ++R + + K + DQ+ L K S Q
Sbjct: 151 -----ITHCQKDGYGCGTPVHKISIEKRNCSIYLLAEPVKRSDEYDDQT--GELRKRSPQ 203
Query: 355 IIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNN 414
I ++ ++ D K +NE C++ D K + M I + VPP
Sbjct: 204 I---------LSPQLCYDILKSVSNE----DCIVMGFDPEKS--RPEDMIIVNFPVPPIQ 248
Query: 415 LRP-LSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDT-- 471
+RP + ME + + ++ ++ +KN E LK +GD
Sbjct: 249 VRPSIKMEILSSSTVDDDLTHK-----------LVDIIKNNEN-------LKNSKGDGSL 290
Query: 472 LNNKLQNSWHELQYNVDLLM--DAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRV 529
+ + + + LQY+V D L + L L GK G IR N+MGKRV
Sbjct: 291 VKYNVNDDFMLLQYHVATFFANDGSLAKCQQKNKKLTKDLSSRLRGKEGRIRGNLMGKRV 350
Query: 530 NFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 589
+ +GR+VIT DP + ++ +G+PL AK LT+ VT N+ L ++V NG VYPGAN +
Sbjct: 351 DMSGRTVITSDPNIALNEVGLPLIIAKNLTFDEIVTEHNIEYLTQLVKNGRRVYPGANFV 410
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 37/56 (66%)
Query: 17 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 72
R+VIT DP + ++ +G+PL AK LT+ VT N+ L ++V NG VYPGAN +
Sbjct: 355 RTVITSDPNIALNEVGLPLIIAKNLTFDEIVTEHNIEYLTQLVKNGRRVYPGANFV 410
>gi|325185155|emb|CCA19646.1| DNAdirected RNA polymerase III largest subunit puta [Albugo
laibachii Nc14]
gi|325188545|emb|CCA23078.1| RNA polymerase III putative [Albugo laibachii Nc14]
Length = 1543
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 78/125 (62%), Gaps = 3/125 (2%)
Query: 468 RGDTLNNKLQNSWHELQYNVDLLM--DAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMM 525
+G TL +++ W LQ V LM D + I G Q L GK G R N+
Sbjct: 318 QGATLTMVMED-WDFLQIQVAQLMHGDTPGLVKPMNAPKSIRGYCQRLKGKQGRFRGNLS 376
Query: 526 GKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPG 585
GKRV+F+GR+VI+PDP L ID +GVP AKT+TYP VT +N+ LRK V+NGPNV+PG
Sbjct: 377 GKRVDFSGRTVISPDPNLRIDQVGVPQHVAKTMTYPEKVTRYNINKLRKCVVNGPNVHPG 436
Query: 586 ANMIQ 590
AN+IQ
Sbjct: 437 ANIIQ 441
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/60 (61%), Positives = 46/60 (76%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID +GVP AKT+TYP VT +N+ LRK V+NGPNV+PGAN+IQ
Sbjct: 382 FSGRTVISPDPNLRIDQVGVPQHVAKTMTYPEKVTRYNINKLRKCVVNGPNVHPGANIIQ 441
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 73/148 (49%), Gaps = 8/148 (5%)
Query: 158 GLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLC 217
G+ D +G +S + D C TC + C GH G+I+L +PV + FF+ + +L++ C C
Sbjct: 73 GVLDKRLG-VSNKSDTCDTCSLRLSDCVGHFGYIKLELPVFHIGFFKAILEILQMICKEC 131
Query: 218 HKINIPATSQLLFINQIK--LLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQS 275
++ + + + F+ +++ DA + + TL R+ Q V+ V+
Sbjct: 132 SRVLLSPSDRESFLQRVRDPRADALRLKALRKKMATLCK----RVVKCPHCQSVNGTVRK 187
Query: 276 ILAHGTKIC-DINDYKGGEELRSAFVAQ 302
+ + K+ + K ++LR+ FVAQ
Sbjct: 188 VNSSTLKLLHEKFRAKSAQDLRNVFVAQ 215
>gi|357144975|ref|XP_003573479.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Brachypodium distachyon]
Length = 1862
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 133/498 (26%), Positives = 209/498 (41%), Gaps = 85/498 (17%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNY 181
++++ + E++Q+SVV + T G PGGL D +G I +R C TC
Sbjct: 16 QLVQFGILSPDEIRQMSVVVIEYAETMEK-GKAKPGGLSDPRLGTI-DRKVKCDTCMAGM 73
Query: 182 TKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGY 241
+C GH GH+EL P+ + F + V +++ C N K+L
Sbjct: 74 AECPGHFGHLELAKPMFHIGFIKTVLSIMRCVC----------------FNCSKIL---- 113
Query: 242 VTQAKDLEETLFNEE-NLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFV 300
D ++ F + +R +L ++ D+ KIC GG++L
Sbjct: 114 ----ADEDDAKFKQALKIRNPKNKLRRIYDA------CKSKKIC-----AGGDDLEVE-D 157
Query: 301 AQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKRE 360
Q VK+K C I+ K++ FK K N +Q+ E
Sbjct: 158 QQDTDEPVKKKRGGCGAQQPNITVDGMKMVAEFKQTKKK---------NDDQDQLPEPVE 208
Query: 361 QGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSM 420
+ ++++E + K ++E L L P + D M ++ L +PP +RP M
Sbjct: 209 RKQILSAERVLNVLKRISDEDCLLLGLNP------KFARPDWMILQVLPIPPPPVRPSVM 262
Query: 421 EQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSW 480
M S + L +AM + +L + G + Q
Sbjct: 263 --MDTSSRSEDDLTHQ------------LAMIIRHNENLRRQERNGAPAHIITEFAQ--- 305
Query: 481 HELQYNVDLLMDAKL----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSV 536
LQ+++ D L + +G I + L K G IR N+MGKRV+F+ R+V
Sbjct: 306 -LLQFHIATYFDNDLPGQPRATQRSG-RPIKSICSRLKAKEGRIRGNLMGKRVDFSARTV 363
Query: 537 ITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYP---GANMIQNED 593
ITPDP +NID +GVP A LTYP VTP+N+ L+++V GP+ P GA I ED
Sbjct: 364 ITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRED 423
Query: 594 GS-----VVRISSSQAVQ 606
G V+ SS Q ++
Sbjct: 424 GQRLDLRYVKKSSDQHLE 441
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 50/84 (59%), Gaps = 8/84 (9%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYP---GAN 70
F R+VITPDP +NID +GVP A LTYP VTP+N+ L+++V GP+ P GA
Sbjct: 358 FSARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAK 417
Query: 71 MIQNEDGS-----VVRISSSQAVQ 89
I EDG V+ SS Q ++
Sbjct: 418 YIIREDGQRLDLRYVKKSSDQHLE 441
>gi|219121691|ref|XP_002181195.1| rna polymerase C 157 kDa [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407181|gb|EEC47118.1| rna polymerase C 157 kDa [Phaeodactylum tricornutum CCAP 1055/1]
Length = 1281
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 88/140 (62%), Gaps = 3/140 (2%)
Query: 476 LQNSWHELQYNVDLLMDAKL-NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGR 534
+ W LQ V ++ ++ + + G+ + GL Q L GK G R N+ GKRV+F+ R
Sbjct: 266 IMEEWDFLQVQVAQYINGEMPGLQRPIGSKPMRGLCQRLKGKQGRFRGNLSGKRVDFSAR 325
Query: 535 SVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDG 594
+VI+PDP L +D +GVP AKT+TYP V+ +N+ LR+ V NGP+V+PGAN+I+ +DG
Sbjct: 326 TVISPDPNLRVDQVGVPERVAKTMTYPERVSRYNIEKLRQRVRNGPDVHPGANLIRMKDG 385
Query: 595 SVVRISSSQAVQRESLAKRL 614
S V+ S RE +AK L
Sbjct: 386 SFVK--SLSFGDRELVAKNL 403
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 58/84 (69%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L +D +GVP AKT+TYP V+ +N+ LR+ V NGP+V+PGAN+I+
Sbjct: 322 FSARTVISPDPNLRVDQVGVPERVAKTMTYPERVSRYNIEKLRQRVRNGPDVHPGANLIR 381
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+DGS V+ S RE +AK L
Sbjct: 382 MKDGSFVK--SLSFGDRELVAKNL 403
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 157 GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFL 216
GG D +G +S++ C TC C GH G+I L +PV + F R LL+ C
Sbjct: 9 GGCLDPRLG-VSDKVSACATCKRKLVDCAGHFGYIRLALPVFHIGFLRHTLHLLQCVCKT 67
Query: 217 CHKINIPATSQLLFINQIK 235
C ++ +P + + +++++
Sbjct: 68 CSRVLMPESDRQKHLSRMR 86
>gi|326435508|gb|EGD81078.1| RNA polymerase III large subunit [Salpingoeca sp. ATCC 50818]
Length = 1377
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 108/212 (50%), Gaps = 15/212 (7%)
Query: 403 MFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSE 462
+ + S++ PP +RP M S + + S+ + + + + S L
Sbjct: 243 LLLTSIICPPGCIRPSVMRDASATSSSEDPISVSL--------TGLDRHRTRYASCLRLT 294
Query: 463 ALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQ 522
L G + + K+ +W +LQ + +L + +L T I G Q L GK G R
Sbjct: 295 CLCGQKLE----KVMETWEQLQISSAILYNGQLTNLMQTQKKPIRGFFQRLKGKQGRFRG 350
Query: 523 NMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNV 582
N+ GKRVNF+GR+VI+PDP + +D + VP + LTYP VT N+ LRKMV+NGP V
Sbjct: 351 NLSGKRVNFSGRTVISPDPNVGVDEVCVPYHVCRILTYPEQVTKHNLEKLRKMVLNGPKV 410
Query: 583 YPGANMIQNEDGSVVRISSSQAVQRESLAKRL 614
YPGA ++ +G ++ + R +LA+ L
Sbjct: 411 YPGATTVELRNGDKKSLAFA---NRRNLARNL 439
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP + +D + VP + LTYP VT N+ LRKMV+NGP VYPGA ++
Sbjct: 359 FSGRTVISPDPNVGVDEVCVPYHVCRILTYPEQVTKHNLEKLRKMVLNGPKVYPGATTVE 418
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+G ++ + R +LA+ L
Sbjct: 419 LRNGDKKSLAFA---NRRNLARNL 439
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 130 TDQEVKQLSVVKVFSPITFNSLGH-TIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
+ Q++++LS V V++P + + + G D MG ++ PC+TC + +C GH
Sbjct: 22 SSQQMQRLSEVNVYAPEMYAASNRKAVDFGPLDRRMGAF-DKATPCSTCALDMRECVGHF 80
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLL 237
GHIEL +PV + +F+ +L+ C C ++ + T LLF +LL
Sbjct: 81 GHIELELPVFHIGYFKATVNVLQRICKTCSRVLM--TDDLLFTYTDRLL 127
>gi|385303556|gb|EIF47620.1| dna-directed rna polymerase iii largest subunit [Dekkera
bruxellensis AWRI1499]
Length = 1472
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 139/537 (25%), Positives = 215/537 (40%), Gaps = 150/537 (27%)
Query: 109 MKEKIITRQEVVPEI---LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLA 163
MKE ++ +VVP+ L+ +++E+ S V+V + F+ +P G D
Sbjct: 1 MKETVV---DVVPKRISGLQFGALSNEEIVSQSEVEVSTRNLFDLDKGRVPVSNGALDPR 57
Query: 164 MGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIP 223
MG IS C TC N C GH GHI+L +PV + +F+
Sbjct: 58 MG-ISSSMAECATCHGNLATCHGHFGHIKLALPVFHVGYFK------------------- 97
Query: 224 ATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKI 283
AT Q+L T K+ L +E++ R + A+L +
Sbjct: 98 ATIQVL------------QTICKNCSAVLLDEBSKRKYLAEL----------------RR 129
Query: 284 CDINDYKGGEELRSAFVAQVLSRHVK-RKCIFCATPINAISYQQRKIIKSFKIDKDNLDQ 342
DI++ + + V +VL + K R+C+ C +N + + +
Sbjct: 130 PDIDNLR-----KMKIVKKVLDQAKKQRRCLVCGA-LNGV------------VKRAAAGG 171
Query: 343 SLDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTN----EHLFLKCL-----IPVLDT 393
+L + ++G + DF+K + E + +C + VL+
Sbjct: 172 GGAAALKIVHDSFRWVGKKGAEEKTRWNDDFQKYFRQNPDLERFYKRCYEDLNPLRVLNL 231
Query: 394 TKELIATDI--------------MFI-RSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSIL 438
K++ TD M+I R L PP +RP
Sbjct: 232 FKQITPTDCELLGIDPAKGGRPEMYIWRYLPAPPVCIRP--------------------- 270
Query: 439 YSCGSLKSVIMAMKNKEQSDLLSEALKGI------------RGDTLNNKLQNSWHELQYN 486
SV+M N D L+ L I +G TLN+ L W LQ
Sbjct: 271 -------SVMMGQSNTSNEDDLTVKLTEIVWTSSMIRAGIQKGITLNS-LFEQWDYLQLA 322
Query: 487 VDLLMDA-----KLNINKTTGAHQ---IDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
V + +++ L T G+ I G Q L GK G R N+ GKRV+F+ R+VI+
Sbjct: 323 VAMYINSDSVSPNLMPGSTGGSKSSKPIRGFCQRLKGKQGRFRGNLSGKRVDFSARTVIS 382
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI--QNED 593
PDP L +D + P AK LTYP VT +N L+ +V NGP++YPGAN + +NED
Sbjct: 383 PDPNLRVDQVCXPELVAKVLTYPERVTRYNKNKLQTLVRNGPDLYPGANYLIRRNED 439
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI- 72
F R+VI+PDP L +D + P AK LTYP VT +N L+ +V NGP++YPGAN +
Sbjct: 375 FSARTVISPDPNLRVDQVCXPELVAKVLTYPERVTRYNKNKLQTLVRNGPDLYPGANYLI 434
Query: 73 -QNED 76
+NED
Sbjct: 435 RRNED 439
>gi|50549343|ref|XP_502142.1| YALI0C22550p [Yarrowia lipolytica]
gi|49648009|emb|CAG82462.1| YALI0C22550p [Yarrowia lipolytica CLIB122]
Length = 1483
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 121/498 (24%), Positives = 201/498 (40%), Gaps = 97/498 (19%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPG--GLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
QE+ +LS V+V + ++ P G D MG +S C TC C GH G
Sbjct: 32 QEILKLSEVEVATRDLYDLQKGRAPMEYGALDPRMG-VSSNMSKCKTCAEPLATCPGHFG 90
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLE 249
H++L +P + +F+ +L+ C C +I
Sbjct: 91 HVKLALPCFHIGYFKATISILQNVCKDCARI----------------------------- 121
Query: 250 ETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVK 309
L ++E+ R +L + G + LR + + ++ K
Sbjct: 122 --LLSDEDRRKFLTELRR----------------------PGIDNLRRMQILKKVNEQCK 157
Query: 310 --RKCIFC---------ATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSN-QIIR 357
R+C+ C A P+ I + R + K +K D S + + + + ++
Sbjct: 158 KQRRCVHCNSINGVVKKAGPLKIIHDKFRHVGKKIPEEKTEFDNSFNTAKESIPDVERLQ 217
Query: 358 KREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRP 417
K+ + +V F+++ L + C + +D K T I R + PP +RP
Sbjct: 218 KKAMDDLNPLKVFNLFREI-----LPMDCELLGMDPGKGRPETYIW--RYMPAPPVCIRP 270
Query: 418 LSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQ 477
M+ E I+++ +++ G++ L
Sbjct: 271 SVMQDSASNEDDLTVKLTEIVWTSAIIEA-------------------GLKQGMAVASLM 311
Query: 478 NSWHELQYNVDLLMDAKLNINKTTGAHQ-IDGLKQMLDGKTGMIRQNMMGKRVNFAGRSV 536
W LQ V + +++ A + I L Q L GK G R N+ GKRV+F+GR+V
Sbjct: 312 EQWELLQLAVAVYINSDTPQGPGQSASKPIRALTQRLKGKQGRFRGNLSGKRVDFSGRTV 371
Query: 537 ITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSV 596
I+PDP L ID + VP AK LTYP VT N+ LR +VI GP+ +PGAN + + S+
Sbjct: 372 ISPDPNLRIDQVAVPDRVAKILTYPERVTSHNIEKLRNLVITGPSQHPGANYLFKKGESL 431
Query: 597 VRISSSQAVQRESLAKRL 614
R + + R +A+RL
Sbjct: 432 RR--NLRFGDRAKIAERL 447
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP AK LTYP VT N+ LR +VI GP+ +PGAN +
Sbjct: 366 FSGRTVISPDPNLRIDQVAVPDRVAKILTYPERVTSHNIEKLRNLVITGPSQHPGANYLF 425
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ S+ R + + R +A+RL
Sbjct: 426 KKGESLRR--NLRFGDRAKIAERL 447
>gi|345487216|ref|XP_003425653.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1 [Nasonia vitripennis]
Length = 1907
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 123/458 (26%), Positives = 187/458 (40%), Gaps = 102/458 (22%)
Query: 157 GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFF-RDVQLLLKLSCF 215
GGL D G I +R C TC N T+C GH GHI+L PV + F + +++L + +
Sbjct: 50 GGLMDPRQGVI-DRNSRCQTCAGNMTECPGHFGHIDLAKPVFHCGFITKTIKILRCVCFY 108
Query: 216 LCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQS 275
+ P + I +I + G P + + V
Sbjct: 109 CSKMLVSPHNPK---IKEIIMKTKG--------------------QPRKRLTFVYD---- 141
Query: 276 ILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKI 335
L IC+ GG+E+ Q + K C YQ +
Sbjct: 142 -LCKSKNICE-----GGDEMDITKEGQEQDPNKKPGHGGCG------RYQP-------NL 182
Query: 336 DKDNLDQSLD-KSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTT 394
+ LD + + K +N+ S +E+ + +E + K T+E F+ + P
Sbjct: 183 RRSGLDVTAEWKHVNEDS------QEKKIALTAERAWEILKHITDEESFILGMDP----- 231
Query: 395 KELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNK 454
+ D M + L VPP +RP +V+M K
Sbjct: 232 -KFARPDWMIVTVLPVPPLAVRP----------------------------AVVMYGSAK 262
Query: 455 EQSDL---LSEALKGIRGDTLNNKLQNSWHELQYNVDLLMD--AKLNINKTTG---AHQI 506
Q DL LS+ +K N + + H + N+ +L A L N G A Q
Sbjct: 263 NQDDLTHKLSDIIKSNNELLRNEQAGAATHVISENIKMLQFHVATLVDNDMPGMPKAMQK 322
Query: 507 DG-----LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYP 561
G +K L GK G IR N+MGKRV+F+ R+VITPDP L ID +GVP A+ LT+P
Sbjct: 323 SGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFP 382
Query: 562 VPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
VTP+N+ ++++V G YPGA I ++G + +
Sbjct: 383 EIVTPFNIDKMQELVRRGNTRYPGAKYIVRDNGDRIDL 420
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 44/69 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ LT+P VTP+N+ ++++V G YPGA I
Sbjct: 352 FSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNTRYPGAKYIV 411
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 412 RDNGDRIDL 420
>gi|12642612|gb|AAK00310.1|AF315820_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Glaucosphaera
vacuolata]
Length = 1746
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/132 (45%), Positives = 83/132 (62%), Gaps = 7/132 (5%)
Query: 474 NKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDG-----LKQMLDGKTGMIRQNMMGKR 528
++L H LQ ++ +M+ L AHQ G + Q L GK G +R N+MGKR
Sbjct: 273 HRLNEQIHVLQAHIITIMNNDLP--GMPRAHQKSGRPIKSISQRLKGKEGRVRGNLMGKR 330
Query: 529 VNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANM 588
V+F+GR+VI+PDP L +D +GVP A LTYP VTP+NV +R++V+NGPN YPGA
Sbjct: 331 VDFSGRTVISPDPNLRLDQVGVPQTIAMNLTYPEVVTPFNVEKMRRLVMNGPNEYPGAKY 390
Query: 589 IQNEDGSVVRIS 600
I+ DGS V ++
Sbjct: 391 IERLDGSKVNLA 402
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 49/70 (70%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L +D +GVP A LTYP VTP+NV +R++V+NGPN YPGA I+
Sbjct: 333 FSGRTVISPDPNLRLDQVGVPQTIAMNLTYPEVVTPFNVEKMRRLVMNGPNEYPGAKYIE 392
Query: 74 NEDGSVVRIS 83
DGS V ++
Sbjct: 393 RLDGSKVNLA 402
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 133 EVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIE 192
E++++SV ++ F +G GL D +G I R PC TC + C GH GHIE
Sbjct: 29 EIRRMSVCEIKFETAF-EMGKPKTEGLMDPRLGAIG-RDLPCKTCHCDEKNCPGHFGHIE 86
Query: 193 LPVPVINTLFFRDVQLLLKLSCFLCHKINI 222
L P+ N FF +L+ CF C K+ I
Sbjct: 87 LVKPMFNIGFFGMTLRVLRCVCFFCSKLLI 116
>gi|443920271|gb|ELU40225.1| RNA polymerase I largest subunit [Rhizoctonia solani AG-1 IA]
Length = 2541
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/259 (31%), Positives = 124/259 (47%), Gaps = 37/259 (14%)
Query: 354 QIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLI----PVLDTTKELIATDIMFIRSLV 409
+ IR R + + E A ++L+ E L P K A D+ F+ L
Sbjct: 1131 KTIRGRNERVLPPEEARAHLRRLFAREPKLTTLLYGRHGPFARQAKAANA-DMFFLDVLP 1189
Query: 410 VPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKN-------KEQSDLLSE 462
VPP RP + EH +N+L +L + L+ + +++ +++ D L
Sbjct: 1190 VPPTRFRPPARMGDSVFEHPQNELLTKVLVTAYRLRDLEASLREANKKPTERDEVDELEA 1249
Query: 463 ALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQ 522
A +G R L +L + +LQ +V+ MD+ N +RQ
Sbjct: 1250 AQEGHR-QKLFGQLLEALIQLQIDVNSFMDSSKN--------------------PAPVRQ 1288
Query: 523 NMM----GKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVIN 578
+ GKRVN+A RSVI+PD + + IG+P FA+ LT+P PVT NV LR+ VIN
Sbjct: 1289 GKLPTHQGKRVNYAARSVISPDVNIETNEIGIPPVFARKLTFPEPVTSHNVKELRQAVIN 1348
Query: 579 GPNVYPGANMIQNEDGSVV 597
G VYPGA+++QNEDG ++
Sbjct: 1349 GTAVYPGASIVQNEDGGLI 1367
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 100/216 (46%), Gaps = 18/216 (8%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
+ + +++++SV ++ +P+ + L GGLYD A+GP SERGD C TC N
Sbjct: 831 ISFSFLNSHDIRRISVKQIVNPVLLDDLNRPNIGGLYDPALGP-SERGDVCGTCRLNSFS 889
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVT 243
C GH GHIELP PV + LF ++ LL+ C CH+ + + + ++ LL+ G +
Sbjct: 890 CPGHFGHIELPSPVYHPLFMTNMLNLLRGVCMWCHQFKMSQGEKAKYEAKLVLLERGLLA 949
Query: 244 QAKDLEETLF-----NEENLRLHPAQLVQLVDSHVQSILAHGTK---ICDINDYKGGE-- 293
A D++E +EE P + + + + H K NDYK G
Sbjct: 950 AASDVDEFSMRPGTKSEEGAE--PGETISEFRRRLGLFVKHHLKDAPASTRNDYKDGPVY 1007
Query: 294 ELRSAFVAQVLSRHVK-RKCIFCATPINAISYQQRK 328
+ R + L V +KC C + Y RK
Sbjct: 1008 QARKDVIQSFLKAAVGCKKCAHC----DGFGYTYRK 1039
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 48/67 (71%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PD + + IG+P FA+ LT+P PVT NV LR+ VING VYPGA+++Q
Sbjct: 1301 YAARSVISPDVNIETNEIGIPPVFARKLTFPEPVTSHNVKELRQAVINGTAVYPGASIVQ 1360
Query: 74 NEDGSVV 80
NEDG ++
Sbjct: 1361 NEDGGLI 1367
>gi|327311709|ref|YP_004338606.1| DNA-directed RNA polymerase subunit alpha [Thermoproteus uzoniensis
768-20]
gi|326948188|gb|AEA13294.1| DNA-directed RNA polymerase subunit alpha [Thermoproteus uzoniensis
768-20]
Length = 884
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/242 (33%), Positives = 121/242 (50%), Gaps = 30/242 (12%)
Query: 383 FLKCLIPVLDTTKELIATD-------IMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQ 435
L+ L+ V ++ EL+ D +R+L VPP ++RP Q+ S + L
Sbjct: 190 ILERLVKVPNSDLELLGVDPTVARPEWGILRTLPVPPPHVRPSI--QLETGIRSEDDLTH 247
Query: 436 SILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKL 495
++ IM M K + L + A N + N W LQY+ D +L
Sbjct: 248 KLV--------DIMRMNEKLKIALETGAP--------TNVIDNLWDLLQYHTATYFDNEL 291
Query: 496 N---INKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPL 552
+ K G + G+ Q L GK G R ++ GKRVNF+ R+VI+PDP L+I+ +GVP+
Sbjct: 292 PGIPLAKHRGGRPLKGIAQRLKGKEGRFRGSLSGKRVNFSARTVISPDPNLSINEVGVPI 351
Query: 553 EFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAK 612
+ AK LT P VT WN+ LR+ V+ GP +PGAN + +G R+ R+ LA+
Sbjct: 352 DIAKILTVPERVTEWNIDDLRQAVMRGPETWPGANYVITPEGR--RVDLRYVKDRKQLAE 409
Query: 613 RL 614
+L
Sbjct: 410 KL 411
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L+I+ +GVP++ AK LT P VT WN+ LR+ V+ GP +PGAN +
Sbjct: 330 FSARTVISPDPNLSINEVGVPIDIAKILTVPERVTEWNIDDLRQAVMRGPETWPGANYVI 389
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+G R+ R+ LA++L
Sbjct: 390 TPEGR--RVDLRYVKDRKQLAEKL 411
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 77/153 (50%), Gaps = 2/153 (1%)
Query: 107 AIMKEKIITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGP 166
A+ ++ + +V+ +I K + +++ SV+++ + ++ G I GGL D +G
Sbjct: 2 AVQQQADVVPTKVIKDI-KFGILSPDLIRRYSVLEITTSEIYDEGGLPIRGGLMDRRLG- 59
Query: 167 ISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATS 226
++E G C TCG Y C GH GHIEL PVI+ F R + +L+ +C C +I +
Sbjct: 60 VAEPGARCETCGQPYDVCPGHFGHIELAKPVIHVEFARFIYDVLRATCPNCGRIMLKDEE 119
Query: 227 QLLFINQIKLLDAGYVTQAKDLEETLFNEENLR 259
+ +++ L + A +L E + + R
Sbjct: 120 IKRYSERLQRLKGRWKLLATNLHEKILRKAAER 152
>gi|301109379|ref|XP_002903770.1| DNA-directed RNA polymerase III largest subunit [Phytophthora
infestans T30-4]
gi|262096773|gb|EEY54825.1| DNA-directed RNA polymerase III largest subunit [Phytophthora
infestans T30-4]
Length = 1534
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 83/127 (65%), Gaps = 3/127 (2%)
Query: 468 RGDTLNNKLQNSWHELQYNVDLLMDAKL-NINKTTGAHQ-IDGLKQMLDGKTGMIRQNMM 525
+G +L +++ W LQ V LM+ + K GA I GL Q L GK G R N+
Sbjct: 313 KGASLKMVMED-WDFLQIQVAQLMNGDTPGLVKPPGAKTGIRGLCQRLKGKQGRFRGNLS 371
Query: 526 GKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPG 585
GKRV+F+GR+VI+PDP L ID +GVP AKT+TYP VT +N+ LRK V+NGP+V+PG
Sbjct: 372 GKRVDFSGRTVISPDPNLRIDQVGVPEHVAKTMTYPEKVTRYNIEKLRKCVVNGPHVHPG 431
Query: 586 ANMIQNE 592
AN+I+ E
Sbjct: 432 ANVIRIE 438
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 47/62 (75%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID +GVP AKT+TYP VT +N+ LRK V+NGP+V+PGAN+I+
Sbjct: 377 FSGRTVISPDPNLRIDQVGVPEHVAKTMTYPEKVTRYNIEKLRKCVVNGPHVHPGANVIR 436
Query: 74 NE 75
E
Sbjct: 437 IE 438
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPG-GLYDLAMGPISERGDPCTTCGNNYT 182
L +D ++ ++S ++V S F G G+ D +G +S + D C TC
Sbjct: 33 LNFGLLSDVDMMRMSELRVQSKDLFKVQTREPQGNGVLDKRLG-VSNKKDTCETCHLKLA 91
Query: 183 KCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
C GH G+I+L +PV + +F+ + +L+ C C ++ +P T + LF+ +++
Sbjct: 92 DCVGHFGYIKLELPVFHIGYFKAITEILQNICKCCSRVLLPPTERELFLRRMR 144
>gi|425770649|gb|EKV09117.1| DNA-directed RNA polymerase [Penicillium digitatum Pd1]
gi|425771955|gb|EKV10383.1| DNA-directed RNA polymerase [Penicillium digitatum PHI26]
Length = 1733
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 80/131 (61%), Gaps = 3/131 (2%)
Query: 483 LQYNVDLLMDAKLNINKTT---GAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY++ MD + T G + L+ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 307 LQYHIATYMDNDIAGQPTAMQKGNRPVKALRSRLKGKEGRLRQNLMGKRVDFSARTVITG 366
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
DP L +D +GVP A+ LTYP VTPWN+ L+K++ NGPN++PGA I ++G + +
Sbjct: 367 DPNLRLDEVGVPYSTARILTYPEVVTPWNIEKLQKLIANGPNIHPGARYIVRDNGERIDL 426
Query: 600 SSSQAVQRESL 610
++ + L
Sbjct: 427 RHAKRAGAQQL 437
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L +D +GVP A+ LTYP VTPWN+ L+K++ NGPN++PGA I
Sbjct: 358 FSARTVITGDPNLRLDEVGVPYSTARILTYPEVVTPWNIEKLQKLIANGPNIHPGARYIV 417
Query: 74 NEDGSVVRISSSQAVQRESL 93
++G + + ++ + L
Sbjct: 418 RDNGERIDLRHAKRAGAQQL 437
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTI-PGGLYDLAMGPISERGDPCTTCGNNYT 182
++ + +E+K++SVV + P T + G+ D +G I +R C TC
Sbjct: 19 IQFGLFAPEEIKRMSVVHIEYPETLDDQRQRPRTKGINDPRLGTI-DRQYNCETCEEGPK 77
Query: 183 KCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLD 238
+C GH GHIEL PV + F ++ LL+ C C KI T+ F ++ D
Sbjct: 78 ECPGHFGHIELASPVFHIGFLTKIKKLLETVCHNCGKIKA-NTADSKFTEALRFRD 132
>gi|403346305|gb|EJY72545.1| hypothetical protein OXYTRI_06457 [Oxytricha trifallax]
Length = 1886
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 92/304 (30%), Positives = 141/304 (46%), Gaps = 38/304 (12%)
Query: 302 QVLSRHVKRKCIFCATPINAISYQQRKIIK-SFKIDKDNLDQSLDKSLNKSSNQIIRKRE 360
Q++ H K +C + +Q K++K S ++ + + N N + +
Sbjct: 140 QIMKHHEKYVFRYCESQNGGCGMKQPKVLKKSLALEVEYFSDNQHYMQNLGYNSV---EQ 196
Query: 361 QGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRP-LS 419
+ ++ EV+ F K+ T E L P M I+ L+V P +RP +S
Sbjct: 197 KAFIWPEEVQRIFSKMTTEEQNLLGIKKP-----------QNMIIKRLIVCPPPVRPSVS 245
Query: 420 MEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNS 479
M E YQ IL + + L + KG TLN KL+
Sbjct: 246 MGGPFKCEDDLTYSYQKILVT---------------NNVLARDMDKGANLTTLN-KLR-- 287
Query: 480 WHELQYNVDLLMDAK---LNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSV 536
+LQ+ V +LMD + + +K + ++ L GK G +R N+MGKRV+F+ RSV
Sbjct: 288 -EQLQFYVAVLMDNECPGIPTHKHKSGKPLKAIRARLRGKEGRVRGNLMGKRVDFSARSV 346
Query: 537 ITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSV 596
ITPDP L +D +GVP+ A+ +T P VTP N+ LR++V NGP+ YPGA I D
Sbjct: 347 ITPDPNLELDQLGVPMAIAQNVTIPEVVTPQNIDELRRLVENGPHRYPGAKYIIRHDERQ 406
Query: 597 VRIS 600
+ I
Sbjct: 407 IDIG 410
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 44/70 (62%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVITPDP L +D +GVP+ A+ +T P VTP N+ LR++V NGP+ YPGA I
Sbjct: 341 FSARSVITPDPNLELDQLGVPMAIAQNVTIPEVVTPQNIDELRRLVENGPHRYPGAKYII 400
Query: 74 NEDGSVVRIS 83
D + I
Sbjct: 401 RHDERQIDIG 410
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 158 GLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLC 217
G+ D MG + +R C TC + C GH GHIEL PV + ++ +LK CF C
Sbjct: 55 GVNDPRMGTM-DRDRLCFTCKGSQVDCPGHFGHIELAKPVYHRGCLEYIKKILKCLCFSC 113
Query: 218 HKINIP 223
K+ P
Sbjct: 114 GKLLYP 119
>gi|157741606|gb|ABV69508.1| RNA polymerase II largest subunit, partial [Bagliettoa steineri]
Length = 988
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/113 (48%), Positives = 75/113 (66%), Gaps = 3/113 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 211 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 270
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
DP L++D +GVP AKTLTYP VT WN++ L+++V+NGPN +PGA I E
Sbjct: 271 DPNLSLDEVGVPRSIAKTLTYPETVTKWNMSKLKQLVVNGPNNHPGARFIIRE 323
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 45/62 (72%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP AKTLTYP VT WN++ L+++V+NGPN +PGA I
Sbjct: 262 FSARTVITGDPNLSLDEVGVPRSIAKTLTYPETVTKWNMSKLKQLVVNGPNNHPGARFII 321
Query: 74 NE 75
E
Sbjct: 322 RE 323
>gi|157741480|gb|ABV69445.1| RNA polymerase II largest subunit, partial [Bagliettoa parmigera]
Length = 988
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/113 (48%), Positives = 75/113 (66%), Gaps = 3/113 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 211 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 270
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
DP L++D +GVP AKTLTYP VT WN++ L+++V+NGPN +PGA I E
Sbjct: 271 DPNLSLDEVGVPRSIAKTLTYPETVTKWNMSKLKQLVVNGPNNHPGARFIIRE 323
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 45/62 (72%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP AKTLTYP VT WN++ L+++V+NGPN +PGA I
Sbjct: 262 FSARTVITGDPNLSLDEVGVPRSIAKTLTYPETVTKWNMSKLKQLVVNGPNNHPGARFII 321
Query: 74 NE 75
E
Sbjct: 322 RE 323
>gi|15897171|ref|NP_341776.1| DNA-directed RNA polymerase subunit A' [Sulfolobus solfataricus P2]
gi|284174417|ref|ZP_06388386.1| DNA-directed RNA polymerase subunit A' [Sulfolobus solfataricus
98/2]
gi|384433684|ref|YP_005643042.1| DNA-directed RNA polymerase subunit A' [Sulfolobus solfataricus
98/2]
gi|17368575|sp|Q980R2.1|RPOA1_SULSO RecName: Full=DNA-directed RNA polymerase subunit A'
gi|167744881|pdb|2PMZ|A Chain A, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|167744892|pdb|2PMZ|Q Chain Q, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|239782143|pdb|3HKZ|A Chain A, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
gi|239782156|pdb|3HKZ|I Chain I, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
gi|13813360|gb|AAK40566.1| DNA-directed RNA polymerase, subunit A' (rpoA1) [Sulfolobus
solfataricus P2]
gi|261601838|gb|ACX91441.1| DNA-directed RNA polymerase subunit A' [Sulfolobus solfataricus
98/2]
Length = 880
Score = 112 bits (281), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 83/142 (58%), Gaps = 5/142 (3%)
Query: 476 LQNSWHELQYNVDLLMDAK---LNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFA 532
+++ W LQY+V D + L +K + L Q L GK G R N+ GKRV+F+
Sbjct: 262 IEDLWDLLQYHVATYFDNEIPGLPPSKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFS 321
Query: 533 GRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
R+VI+PDP ++ID +GVP AKTLT P +TPWN+ LR+ VINGP+ +PGAN +
Sbjct: 322 SRTVISPDPNISIDEVGVPEIIAKTLTVPERITPWNIEKLRQFVINGPDKWPGANYVIRP 381
Query: 593 DGSVVRISSSQAVQRESLAKRL 614
DG RI R+ LA L
Sbjct: 382 DGR--RIDLRYVKDRKELASTL 401
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP ++ID +GVP AKTLT P +TPWN+ LR+ VINGP+ +PGAN +
Sbjct: 320 FSSRTVISPDPNISIDEVGVPEIIAKTLTVPERITPWNIEKLRQFVINGPDKWPGANYVI 379
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
DG RI R+ LA L
Sbjct: 380 RPDGR--RIDLRYVKDRKELASTL 401
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
+K + E++++SV + +P ++ G I G + D +G I E G C TCGN
Sbjct: 9 IKFGILSPDEIRKMSVTAIITPDVYDEDGTPIEGSVMDPRLGVI-EPGQKCPTCGNTLGN 67
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINI 222
C GH GHIEL PVI+ + + LK +C C ++ I
Sbjct: 68 CPGHFGHIELVRPVIHVGLVKHIYEFLKATCRRCGRVKI 106
>gi|352682852|ref|YP_004893376.1| DNA-directed RNA polymerase subunit A' [Thermoproteus tenax Kra 1]
gi|350275651|emb|CCC82298.1| DNA-directed RNA polymerase subunit A' [Thermoproteus tenax Kra 1]
Length = 883
Score = 112 bits (280), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 80/241 (33%), Positives = 121/241 (50%), Gaps = 30/241 (12%)
Query: 384 LKCLIPVLDTTKELIATD-------IMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQS 436
L+ L+ V ++ EL+ D +R L VPP ++RP Q+ S + L
Sbjct: 190 LERLVKVPNSDLELLGIDPTSARPEWAILRVLPVPPPHVRPSI--QLETGIRSEDDLTHK 247
Query: 437 ILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLN 496
++ IM M K + L + A N + N W LQY++ D +L
Sbjct: 248 LV--------DIMRMNEKLKIALETGAP--------TNVIDNLWDLLQYHIATYFDNELP 291
Query: 497 ---INKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLE 553
+ K G + G+ Q L GK G R ++ GKRVNF+ R+VI+PDP L+I+ +GVP++
Sbjct: 292 GIPLAKHRGGRPLKGIAQRLKGKEGRFRGSLSGKRVNFSARTVISPDPNLSINEVGVPID 351
Query: 554 FAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKR 613
AK LT P VT WN+ L++ V+ GP +PGAN + +G RI R+ LA++
Sbjct: 352 IAKVLTVPERVTQWNLEDLKQAVMRGPEAWPGANYVITPEGR--RIDLRYVKDRKQLAEK 409
Query: 614 L 614
L
Sbjct: 410 L 410
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L+I+ +GVP++ AK LT P VT WN+ L++ V+ GP +PGAN +
Sbjct: 329 FSARTVISPDPNLSINEVGVPIDIAKVLTVPERVTQWNLEDLKQAVMRGPEAWPGANYVI 388
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+G RI R+ LA++L
Sbjct: 389 TPEGR--RIDLRYVKDRKQLAEKL 410
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 64/126 (50%), Gaps = 1/126 (0%)
Query: 134 VKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIEL 193
+++ S +++ + ++ G + GL D +G ++E G C TCG +Y C GH GHIEL
Sbjct: 27 IRRYSTLEITTSEIYDEGGLPVRSGLMDRRLG-VAEPGAKCETCGQSYDVCPGHFGHIEL 85
Query: 194 PVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLF 253
PVI+ F R + +L+ +C C +I + + +++ L + A +L E +
Sbjct: 86 AKPVIHVEFARFIYDVLRATCPHCGRIMLKDEEIRRYSERLQRLKGRWKLLASNLHEKIL 145
Query: 254 NEENLR 259
+ R
Sbjct: 146 RKAAER 151
>gi|125657572|gb|ABN48849.1| RNA polymerase II largest subunit [Miliolidae sp. DL-2007]
Length = 462
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 113/435 (25%), Positives = 180/435 (41%), Gaps = 84/435 (19%)
Query: 183 KCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYV 242
+C GH GHIEL P + F +LK C+ C K+ + +S N K V
Sbjct: 1 ECPGHFGHIELARPCYHCGFLSVSLKVLKCVCYYCSKLLVDKSS-----NSFK-----QV 50
Query: 243 TQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKIC----DINDYKGGEELRSA 298
+ K+ E L E L A TK C I+D K +EL +
Sbjct: 51 LEIKNPRERLIEIEKL-------------------AQRTKHCGRGDSIDDKKNNDELDNI 91
Query: 299 FVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRK 358
+ + P Y++ + +K F ++ D DK N S+ Q+
Sbjct: 92 NSDNDXDNDITKSGCGQEQP----KYRKGQGVKLFIEFPESKDHGEDKRQNLSAKQVY-- 145
Query: 359 REQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPL 418
+ + ++++A ++ + + I L V P +RP
Sbjct: 146 --EIFNRITDMDAQ-----------------IMGFNPQFCKPSWLLITILPVSPPAVRPF 186
Query: 419 S-MEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQ 477
M+ M P + IL + +LK + +G+ L ++
Sbjct: 187 VLMDGMRPSQDDLTHKVYDILKTNNALKR---------------QEARGVPEHVLEELIE 231
Query: 478 NSWHELQYNVDLLMDAKLNIN---KTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGR 534
LQY+V +MD +++ K I L+Q L GK G +R N+MGKR +F+ R
Sbjct: 232 ----LLQYHVTTMMDNEVSGQPQAKQKSGKPIKSLRQRLVGKAGRVRGNLMGKRCDFSAR 287
Query: 535 SVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDG 594
+VI DP L+ID +GVP A LTYP VT +N+ ++++V NGP ++PGA I +DG
Sbjct: 288 TVIGGDPNLSIDEVGVPRSIALNLTYPGRVTKYNLHKMKELVENGPGIHPGAKSIIRDDG 347
Query: 595 SVVRISSSQAVQRES 609
+ + + VQR S
Sbjct: 348 KQIDL---RWVQRTS 359
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI DP L+ID +GVP A LTYP VT +N+ ++++V NGP ++PGA I
Sbjct: 284 FSARTVIGGDPNLSIDEVGVPRSIALNLTYPGRVTKYNLHKMKELVENGPGIHPGAKSII 343
Query: 74 NEDGSVVRISSSQAVQRES 92
+DG + + + VQR S
Sbjct: 344 RDDGKQIDL---RWVQRTS 359
>gi|284998388|ref|YP_003420156.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
L.D.8.5]
gi|284446284|gb|ADB87786.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
L.D.8.5]
Length = 880
Score = 112 bits (279), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 60/142 (42%), Positives = 83/142 (58%), Gaps = 5/142 (3%)
Query: 476 LQNSWHELQYNVDLLMDAK---LNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFA 532
+++ W LQY+V D + L +K + L Q L GK G R N+ GKRV+F+
Sbjct: 262 IEDLWDLLQYHVATYFDNEIPGLPPSKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFS 321
Query: 533 GRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
R+VI+PDP ++ID +GVP A+TLT P +TPWN+ LR+ VINGP+ +PGAN +
Sbjct: 322 SRTVISPDPNISIDEVGVPEIIARTLTVPERITPWNIEKLRQFVINGPDKWPGANYVIRP 381
Query: 593 DGSVVRISSSQAVQRESLAKRL 614
DG RI R+ LA L
Sbjct: 382 DGR--RIDLRYVKDRKELASTL 401
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP ++ID +GVP A+TLT P +TPWN+ LR+ VINGP+ +PGAN +
Sbjct: 320 FSSRTVISPDPNISIDEVGVPEIIARTLTVPERITPWNIEKLRQFVINGPDKWPGANYVI 379
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
DG RI R+ LA L
Sbjct: 380 RPDGR--RIDLRYVKDRKELASTL 401
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
+K + E++++SV + +P ++ G I G + D +G I E G C TCGN
Sbjct: 9 IKFGILSPDEIRKMSVTAIITPDVYDEDGTPIEGSVMDPRLGVI-EPGQKCPTCGNTLGN 67
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINI 222
C GH GHIEL PVI+ F + V LK +C C ++ I
Sbjct: 68 CPGHFGHIELVRPVIHVGFVKHVYEFLKATCRRCGRVKI 106
>gi|367004166|ref|XP_003686816.1| hypothetical protein TPHA_0H01760 [Tetrapisispora phaffii CBS 4417]
gi|357525118|emb|CCE64382.1| hypothetical protein TPHA_0H01760 [Tetrapisispora phaffii CBS 4417]
Length = 1459
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 68/165 (41%), Positives = 101/165 (61%), Gaps = 12/165 (7%)
Query: 457 SDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDA-KLNI------NKTTGAHQIDGL 509
S L+ L+ +G ++NN +++ W LQ +V + +++ +N+ N T A I G
Sbjct: 296 SSLIKAGLE--KGISINNMMEH-WDYLQLSVAMYINSDSVNLLVMPGSNGGTKAKPIRGF 352
Query: 510 KQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNV 569
Q L GK G R N+ GKRV+F+GR+VI+PDP L+ID + VP AK LTYP VT +N
Sbjct: 353 CQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPELVAKVLTYPEKVTRYNK 412
Query: 570 TLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRL 614
T L+K+V+NGPNV+PGAN + + R + + R+ LAK+L
Sbjct: 413 TKLQKLVMNGPNVHPGANYLLKSNEEARR--NLRYGNRDKLAKQL 455
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 55/84 (65%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L+ID + VP AK LTYP VT +N T L+K+V+NGPNV+PGAN +
Sbjct: 374 FSGRTVISPDPNLSIDEVAVPELVAKVLTYPEKVTRYNKTKLQKLVMNGPNVHPGANYLL 433
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ R + + R+ LAK+L
Sbjct: 434 KSNEEARR--NLRYGNRDKLAKQL 455
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 155 IPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSC 214
I GG D MG +S C+TC N C GH GHI+L +PV + +F+ +L+ C
Sbjct: 49 IEGGALDPKMG-VSSSTLECSTCHGNLASCHGHFGHIKLSLPVFHVGYFKATIQILQGVC 107
Query: 215 FLCHKINIPATSQLLFINQIK 235
C I + T + F+++++
Sbjct: 108 KSCSAILLNDTDKRHFLHELR 128
>gi|238620364|ref|YP_002915190.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
M.16.4]
gi|238381434|gb|ACR42522.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
M.16.4]
Length = 880
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 60/142 (42%), Positives = 83/142 (58%), Gaps = 5/142 (3%)
Query: 476 LQNSWHELQYNVDLLMDAK---LNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFA 532
+++ W LQY+V D + L +K + L Q L GK G R N+ GKRV+F+
Sbjct: 262 IEDLWDLLQYHVATYFDNEIPGLPPSKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFS 321
Query: 533 GRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
R+VI+PDP ++ID +GVP A+TLT P +TPWN+ LR+ VINGP+ +PGAN +
Sbjct: 322 SRTVISPDPNISIDEVGVPEIIARTLTVPERITPWNIEKLRQFVINGPDKWPGANYVIRP 381
Query: 593 DGSVVRISSSQAVQRESLAKRL 614
DG RI R+ LA L
Sbjct: 382 DGR--RIDLRYVKDRKELASTL 401
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP ++ID +GVP A+TLT P +TPWN+ LR+ VINGP+ +PGAN +
Sbjct: 320 FSSRTVISPDPNISIDEVGVPEIIARTLTVPERITPWNIEKLRQFVINGPDKWPGANYVI 379
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
DG RI R+ LA L
Sbjct: 380 RPDGR--RIDLRYVKDRKELASTL 401
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
+K + E++++SV + +P ++ G I G + D +G I E G C TCGN
Sbjct: 9 IKFGILSPDEIRKMSVTAIITPDVYDEDGTPIEGSVMDPRLGVI-EPGQKCPTCGNTLGN 67
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINI 222
C GH GHIEL PVI+ F + V LK +C C ++ I
Sbjct: 68 CPGHFGHIELVRPVIHVGFVKHVYEFLKATCRRCGRVKI 106
>gi|227828174|ref|YP_002829954.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
M.14.25]
gi|229585403|ref|YP_002843905.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
M.16.27]
gi|385773844|ref|YP_005646411.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
HVE10/4]
gi|385776479|ref|YP_005649047.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
REY15A]
gi|227459970|gb|ACP38656.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
M.14.25]
gi|228020453|gb|ACP55860.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
M.16.27]
gi|323475227|gb|ADX85833.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
REY15A]
gi|323477959|gb|ADX83197.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
HVE10/4]
Length = 880
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 60/142 (42%), Positives = 83/142 (58%), Gaps = 5/142 (3%)
Query: 476 LQNSWHELQYNVDLLMDAK---LNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFA 532
+++ W LQY+V D + L +K + L Q L GK G R N+ GKRV+F+
Sbjct: 262 IEDLWDLLQYHVATYFDNEIPGLPPSKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFS 321
Query: 533 GRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
R+VI+PDP ++ID +GVP A+TLT P +TPWN+ LR+ VINGP+ +PGAN +
Sbjct: 322 SRTVISPDPNISIDEVGVPEIIARTLTVPERITPWNIEKLRQFVINGPDKWPGANYVIRP 381
Query: 593 DGSVVRISSSQAVQRESLAKRL 614
DG RI R+ LA L
Sbjct: 382 DGR--RIDLRYVKDRKELASTL 401
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP ++ID +GVP A+TLT P +TPWN+ LR+ VINGP+ +PGAN +
Sbjct: 320 FSSRTVISPDPNISIDEVGVPEIIARTLTVPERITPWNIEKLRQFVINGPDKWPGANYVI 379
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
DG RI R+ LA L
Sbjct: 380 RPDGR--RIDLRYVKDRKELASTL 401
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
+K + E++++SV + +P ++ G I G + D +G I E G C TCGN
Sbjct: 9 IKFGILSPDEIRKMSVTAIITPDVYDEDGTPIEGSVMDPRLGVI-EPGQKCPTCGNTLGN 67
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINI 222
C GH GHIEL PVI+ F + V LK +C C ++ I
Sbjct: 68 CPGHFGHIELVRPVIHVGFVKHVYEFLKATCRRCGRVKI 106
>gi|237823477|pdb|2WAQ|A Chain A, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823490|pdb|2WB1|A Chain A, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823512|pdb|2WB1|W Chain W, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|323462788|pdb|2Y0S|A Chain A, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
gi|323462810|pdb|2Y0S|W Chain W, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
gi|400260742|pdb|4AYB|A Chain A, Rnap At 3.2ang
gi|400260759|pdb|4B1O|A Chain A, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|400260785|pdb|4B1P|W Chain W, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|219814429|gb|ACL36488.1| RNA polymerase subunit 1N [Sulfolobus shibatae B12]
Length = 880
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 60/142 (42%), Positives = 83/142 (58%), Gaps = 5/142 (3%)
Query: 476 LQNSWHELQYNVDLLMDAK---LNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFA 532
+++ W LQY+V D + L +K + L Q L GK G R N+ GKRV+F+
Sbjct: 262 IEDLWDLLQYHVATYFDNEIPGLPPSKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFS 321
Query: 533 GRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
R+VI+PDP ++ID +GVP A+TLT P +TPWN+ LR+ VINGP+ +PGAN +
Sbjct: 322 SRTVISPDPNISIDEVGVPEIIARTLTVPERITPWNIEKLRQFVINGPDKWPGANYVIRP 381
Query: 593 DGSVVRISSSQAVQRESLAKRL 614
DG RI R+ LA L
Sbjct: 382 DGR--RIDLRYVKDRKELASTL 401
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP ++ID +GVP A+TLT P +TPWN+ LR+ VINGP+ +PGAN +
Sbjct: 320 FSSRTVISPDPNISIDEVGVPEIIARTLTVPERITPWNIEKLRQFVINGPDKWPGANYVI 379
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
DG RI R+ LA L
Sbjct: 380 RPDGR--RIDLRYVKDRKELASTL 401
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
+K + E++++SV + +P ++ G I G + D +G I E G C TCGN
Sbjct: 9 IKFGILSPDEIRKMSVTAIITPDVYDEDGTPIEGSVMDPRLGVI-EPGQKCPTCGNTLGN 67
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINI 222
C GH GHIEL PVI+ F + V LK +C C ++ I
Sbjct: 68 CPGHFGHIELVRPVIHVGFVKHVYEFLKATCRRCGRVKI 106
>gi|157741476|gb|ABV69443.1| RNA polymerase II largest subunit, partial [Verrucaria baldensis]
Length = 998
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 75/114 (65%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 221 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 280
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP AKTLTYP VT WN+ L+++V+NGPN +PGA I E+
Sbjct: 281 DPNLSLDEVGVPRSIAKTLTYPETVTLWNMDKLKQLVVNGPNNHPGARFIVREN 334
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 45/63 (71%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP AKTLTYP VT WN+ L+++V+NGPN +PGA I
Sbjct: 272 FSARTVITGDPNLSLDEVGVPRSIAKTLTYPETVTLWNMDKLKQLVVNGPNNHPGARFIV 331
Query: 74 NED 76
E+
Sbjct: 332 REN 334
>gi|227830881|ref|YP_002832661.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
L.S.2.15]
gi|229579767|ref|YP_002838166.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
Y.G.57.14]
gi|229581564|ref|YP_002839963.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
Y.N.15.51]
gi|227457329|gb|ACP36016.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
L.S.2.15]
gi|228010482|gb|ACP46244.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
Y.G.57.14]
gi|228012280|gb|ACP48041.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
Y.N.15.51]
Length = 880
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/142 (42%), Positives = 83/142 (58%), Gaps = 5/142 (3%)
Query: 476 LQNSWHELQYNVDLLMDAK---LNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFA 532
+++ W LQY+V D + L +K + L Q L GK G R N+ GKRV+F+
Sbjct: 262 IEDLWDLLQYHVATYFDNEIPGLPPSKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFS 321
Query: 533 GRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
R+VI+PDP ++ID +GVP A+TLT P +TPWN+ LR+ VINGP+ +PGAN +
Sbjct: 322 SRTVISPDPNISIDEVGVPEIIARTLTVPERITPWNIEKLRQFVINGPDKWPGANYVIRP 381
Query: 593 DGSVVRISSSQAVQRESLAKRL 614
DG RI R+ LA L
Sbjct: 382 DGR--RIDLRYVKDRKELASTL 401
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP ++ID +GVP A+TLT P +TPWN+ LR+ VINGP+ +PGAN +
Sbjct: 320 FSSRTVISPDPNISIDEVGVPEIIARTLTVPERITPWNIEKLRQFVINGPDKWPGANYVI 379
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
DG RI R+ LA L
Sbjct: 380 RPDGR--RIDLRYVKDRKELASTL 401
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
+K + E++++SV + +P ++ G I G + D +G I E G C TCGN
Sbjct: 9 IKFGILSPDEIRKMSVTAIITPDVYDEDGTPIEGSVMDPRLGVI-EPGQKCPTCGNTLGN 67
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINI 222
C GH GHIEL PVI+ F + V LK +C C ++ I
Sbjct: 68 CPGHFGHIELVRPVIHVGFVKHVYEFLKATCRRCGRVKI 106
>gi|126649169|ref|XP_001388257.1| DNA-directed RNA polymerase I [Cryptosporidium parvum Iowa II]
gi|126117179|gb|EAZ51279.1| DNA-directed RNA polymerase I, putative [Cryptosporidium parvum
Iowa II]
Length = 1805
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 114/229 (49%), Gaps = 20/229 (8%)
Query: 374 KKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVE--HSRN 431
K +W N + + P+ + + + F+ ++ V N RPL M + H R
Sbjct: 322 KNIWENNRKIFEFIFPICKS----LGWEAFFMFTVPVSANKFRPLGMAIGRNISLLHPRT 377
Query: 432 KLYQSILYSCGSLKSVIMAMKNK---------EQSDLLSEALKGIRGD--TLNNKLQNSW 480
IL + LK + + + E S + K I+ + +N L +
Sbjct: 378 SGLLEILTANDRLKFYVDLQRKENTNESSIEGEDSSKTGKGTKTIKEEIEVNSNNLISYV 437
Query: 481 HELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPD 540
LQ V++ +D + ++ G++Q L+ K G+IRQ MMGKRVN++ R+VI PD
Sbjct: 438 SSLQEKVNMYLDQSKSFKPSSAP---PGIRQWLEKKAGVIRQKMMGKRVNYSARTVIGPD 494
Query: 541 PYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 589
PYL+ + IGVPL FA LT P V NV+L+ +V NGPN+YPGAN +
Sbjct: 495 PYLDTNEIGVPLMFALNLTIPERVGTHNVSLMANLVENGPNLYPGANKL 543
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 68/117 (58%), Gaps = 2/117 (1%)
Query: 133 EVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIE 192
EVK+LSV V S TF S G + GGL+DL MGP+S R D C TCG+ +C GHIGHIE
Sbjct: 22 EVKKLSVCHVTSTTTFESTGESKVGGLHDLRMGPLSNR-DFCGTCGSR-NECPGHIGHIE 79
Query: 193 LPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLE 249
L +PV + LF ++ +LK C+ C I + ++ + + + +KDLE
Sbjct: 80 LELPVFHPLFLGNLVRILKCCCWHCCCIRLSKKVCNGYVKRFESIGKNSNVGSKDLE 136
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 72
+ R+VI PDPYL+ + IGVPL FA LT P V NV+L+ +V NGPN+YPGAN +
Sbjct: 485 YSARTVIGPDPYLDTNEIGVPLMFALNLTIPERVGTHNVSLMANLVENGPNLYPGANKL 543
>gi|157741478|gb|ABV69444.1| RNA polymerase II largest subunit, partial [Bagliettoa cazzae]
Length = 999
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/113 (48%), Positives = 74/113 (65%), Gaps = 3/113 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 222 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 281
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
DP L++D +GVP AKTLTYP VT WN+ L+++V+NGPN +PGA I E
Sbjct: 282 DPNLSLDEVGVPRSIAKTLTYPETVTRWNMHKLKQLVVNGPNNHPGARFIVRE 334
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 44/62 (70%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP AKTLTYP VT WN+ L+++V+NGPN +PGA I
Sbjct: 273 FSARTVITGDPNLSLDEVGVPRSIAKTLTYPETVTRWNMHKLKQLVVNGPNNHPGARFIV 332
Query: 74 NE 75
E
Sbjct: 333 RE 334
>gi|226876209|gb|ACO89425.1| RNA polymerase II largest subunit, partial [Chaetothyriales sp.
TRN107]
Length = 353
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 77/125 (61%), Gaps = 3/125 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY++ MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 212 LQYHIATYMDNDIAGLDRAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 271
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
DP L++D +GVP A+TLTYPV VT WN L + V NGP+ +PGA + +DG + +
Sbjct: 272 DPNLSLDEVGVPRSIARTLTYPVKVTEWNRDRLSEYVRNGPDTHPGARYVIRDDGEKINL 331
Query: 600 SSSQA 604
++
Sbjct: 332 RHTKG 336
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 47/74 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYPV VT WN L + V NGP+ +PGA +
Sbjct: 263 FSARTVITGDPNLSLDEVGVPRSIARTLTYPVKVTEWNRDRLSEYVRNGPDTHPGARYVI 322
Query: 74 NEDGSVVRISSSQA 87
+DG + + ++
Sbjct: 323 RDDGEKINLRHTKG 336
>gi|409075371|gb|EKM75752.1| hypothetical protein AGABI1DRAFT_79519 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1402
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 78/130 (60%), Gaps = 1/130 (0%)
Query: 465 KGIRGDTLNNKLQNSWHELQYNVDLLMDAKL-NINKTTGAHQIDGLKQMLDGKTGMIRQN 523
KG+ + + W LQ +V + ++++L + G I G Q L GK G R N
Sbjct: 289 KGLLRGSPTPQFMEQWDFLQLSVAMYVNSELPGVPSQPGQKPIRGFVQRLKGKQGRFRGN 348
Query: 524 MMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVY 583
+ GKRV+F+GR+VI+PDP L ID + VP AK LTYP VTP N+ +LRK V NGP+V+
Sbjct: 349 LSGKRVDFSGRTVISPDPNLRIDEVAVPERVAKILTYPERVTPHNIEMLRKAVRNGPDVH 408
Query: 584 PGANMIQNED 593
PGAN + +
Sbjct: 409 PGANYVSRAE 418
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 43/63 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP AK LTYP VTP N+ +LRK V NGP+V+PGAN +
Sbjct: 356 FSGRTVISPDPNLRIDEVAVPERVAKILTYPERVTPHNIEMLRKAVRNGPDVHPGANYVS 415
Query: 74 NED 76
+
Sbjct: 416 RAE 418
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 155 IPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSC 214
+ G+ D +G +++ C TCG +Y C GH +I+L VPV + +F+ + +L+ C
Sbjct: 48 VQNGVLDRRLG-TTDKNAFCETCGQSYVHCVGHYAYIKLVVPVFHIGYFKHIISVLQAIC 106
Query: 215 FLCHKINIPATSQLLFINQIK 235
C ++ + + FI + +
Sbjct: 107 KTCARVLLEEPDRRTFIKRFR 127
>gi|426198021|gb|EKV47947.1| hypothetical protein AGABI2DRAFT_202225 [Agaricus bisporus var.
bisporus H97]
Length = 1402
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 78/130 (60%), Gaps = 1/130 (0%)
Query: 465 KGIRGDTLNNKLQNSWHELQYNVDLLMDAKL-NINKTTGAHQIDGLKQMLDGKTGMIRQN 523
KG+ + + W LQ +V + ++++L + G I G Q L GK G R N
Sbjct: 289 KGLLRGSPTPQFMEQWDFLQLSVAMYVNSELPGVPSQPGQKPIRGFVQRLKGKQGRFRGN 348
Query: 524 MMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVY 583
+ GKRV+F+GR+VI+PDP L ID + VP AK LTYP VTP N+ +LRK V NGP+V+
Sbjct: 349 LSGKRVDFSGRTVISPDPNLRIDEVAVPERVAKILTYPERVTPHNIEMLRKAVRNGPDVH 408
Query: 584 PGANMIQNED 593
PGAN + +
Sbjct: 409 PGANYVSRAE 418
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 43/63 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP AK LTYP VTP N+ +LRK V NGP+V+PGAN +
Sbjct: 356 FSGRTVISPDPNLRIDEVAVPERVAKILTYPERVTPHNIEMLRKAVRNGPDVHPGANYVS 415
Query: 74 NED 76
+
Sbjct: 416 RAE 418
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 155 IPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSC 214
+ G+ D +G +++ C TCG +Y C GH +I+L VPV + +F+ + +L+ C
Sbjct: 48 VQNGVLDRRLG-TTDKNAFCETCGQSYVHCVGHYAYIKLVVPVFHIGYFKHIISVLQAIC 106
Query: 215 FLCHKINIPATSQLLFINQIK 235
C ++ + + FI + +
Sbjct: 107 KTCARVLLEEPDRRTFIKRFR 127
>gi|157741592|gb|ABV69501.1| RNA polymerase II largest subunit, partial [Verrucaria marmorea]
Length = 999
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 75/114 (65%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 222 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 281
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TLTYP VT WN+ L+++V+NGPN +PGA I E+
Sbjct: 282 DPNLSLDEVGVPRSIARTLTYPETVTLWNMGKLKQLVVNGPNNHPGARFIVREN 335
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 45/63 (71%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT WN+ L+++V+NGPN +PGA I
Sbjct: 273 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTLWNMGKLKQLVVNGPNNHPGARFIV 332
Query: 74 NED 76
E+
Sbjct: 333 REN 335
>gi|405121486|gb|AFR96255.1| DNA-directed RNA polymerase III largest subunit [Cryptococcus
neoformans var. grubii H99]
Length = 1437
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 83/127 (65%), Gaps = 2/127 (1%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRS 535
+ ++W L V L ++++ +T G+ I G Q L GK G R N+ GKRV+F+GR+
Sbjct: 312 ISSNWEVLGQAVALYINSQAPGMQTIGSKPIRGFVQRLKGKQGRFRGNLSGKRVDFSGRT 371
Query: 536 VITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ--NED 593
VI PDP L ID + VP + A L+YP VT +N+ L+R+ +ING ++PGAN+++ +E+
Sbjct: 372 VIGPDPNLRIDEVAVPEKVAVKLSYPERVTDYNIQLMRQAIINGSKLHPGANVLERKHEN 431
Query: 594 GSVVRIS 600
GS VRIS
Sbjct: 432 GSTVRIS 438
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 51/72 (70%), Gaps = 2/72 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI PDP L ID + VP + A L+YP VT +N+ L+R+ +ING ++PGAN+++
Sbjct: 367 FSGRTVIGPDPNLRIDEVAVPEKVAVKLSYPERVTDYNIQLMRQAIINGSKLHPGANVLE 426
Query: 74 --NEDGSVVRIS 83
+E+GS VRIS
Sbjct: 427 RKHENGSTVRIS 438
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 136 QLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPV 195
Q+S+ +++ S + G L D MGP +E+G C TCG + KC GH G+I+L +
Sbjct: 43 QVSIAELYQNNEDGSRTTALQGPL-DARMGP-NEKGKKCATCGEDTQKCVGHYGYIKLVL 100
Query: 196 PVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
PV + +FR +L C C ++ +P T + F+ + +
Sbjct: 101 PVFHIGYFRPTINMLSCICKTCARVLLPETERASFLKRFR 140
>gi|83320438|gb|ABC02846.1| RNA polymerase II largest subunit, partial [Conidiobolus coronatus]
Length = 749
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 104/207 (50%), Gaps = 25/207 (12%)
Query: 396 ELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKE 455
E + M I +L VPP +RP M M ++ L + + KS+ +A+ +
Sbjct: 157 EFARPEWMIITALAVPPPAVRPSIM--MDGTNRGQDDLTYKLSDIIKTNKSLEVALSDGS 214
Query: 456 QSDLLSEALKGIRGDTLNNKLQNSWHE--LQYNVDLLMD---AKLNINKTTGAHQIDGLK 510
+L E HE LQY+V MD A L + I ++
Sbjct: 215 PGHILEE------------------HEQYLQYHVATYMDNDIAGLPQSLQKSGRPIKSIR 256
Query: 511 QMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVT 570
L GK G +R N+MGKRV+F+ R+VIT DP L+ID +GVP A+ LTYP VTP+N+
Sbjct: 257 ARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSIDQVGVPRSIARNLTYPERVTPYNIQ 316
Query: 571 LLRKMVINGPNVYPGANMIQNEDGSVV 597
LR+ V NGPNV+PGA + + G +
Sbjct: 317 RLREAVRNGPNVHPGAKYVIRDTGERI 343
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 45/67 (67%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L+ID +GVP A+ LTYP VTP+N+ LR+ V NGPNV+PGA +
Sbjct: 277 FSARTVITGDPNLSIDQVGVPRSIARNLTYPERVTPYNIQRLREAVRNGPNVHPGAKYVI 336
Query: 74 NEDGSVV 80
+ G +
Sbjct: 337 RDTGERI 343
>gi|3169691|gb|AAC17924.1| RNA polymerase II largest subunit, partial [Pyropia yezoensis]
Length = 1685
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 111/428 (25%), Positives = 182/428 (42%), Gaps = 96/428 (22%)
Query: 183 KCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYV 242
+C GH G IEL P+ + F LL+ C+ C + L I ++
Sbjct: 1 ECPGHFGFIELAKPMFHAGFMGMTLKLLRCVCYFCSR---------LLITKVD------- 44
Query: 243 TQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQ 302
D VQ IL +K+ E R+A +
Sbjct: 45 ---------------------------DPGVQKILKAVSKM----------ESRAARLRI 67
Query: 303 VLSRHVKRKCIFCATPINAIS----YQQRKIIK-SFKIDKDNLDQSLDKSLNKSSNQIIR 357
+ RKC+ +P S ++Q K + KI D D D ++
Sbjct: 68 MSGLCTARKCLITESPDGGASTGCGHEQPKYKREGLKIRADFPDDGADVDGAPAN----- 122
Query: 358 KREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRP 417
+R+Q V A +V + FK++ N+ ++ + + + + L VPP ++R
Sbjct: 123 ERKQN-VSAEKVLSVFKRISDND-------AELMGLSARWARPEWLILTLLPVPPPHVRT 174
Query: 418 LSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTL-NNKL 476
M M + + L ++ +VI+ KN + AL+ + G ++L
Sbjct: 175 SIM--MDATQRGEDDLTHNL--------AVIV--KN-------NTALRNLEGHGAPAHRL 215
Query: 477 QNSWHELQYNVDLLMDAKL----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFA 532
LQ++V M+ L + +G + + Q L GK G +R N+MGKRV+F+
Sbjct: 216 AEQIFLLQFHVATYMNNDLPGMPRAAQKSG-RPLKSISQRLKGKEGRLRGNLMGKRVDFS 274
Query: 533 GRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
R+VITPDP L +D +GVP AK LT+P VT +N+ ++++V NGP+ YP A IQ +
Sbjct: 275 ARTVITPDPNLRLDQVGVPFSIAKNLTFPETVTAYNIEEMQQLVENGPDEYPDAKYIQRD 334
Query: 593 DGSVVRIS 600
DG V ++
Sbjct: 335 DGYQVNLA 342
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L +D +GVP AK LT+P VT +N+ ++++V NGP+ YP A IQ
Sbjct: 273 FSARTVITPDPNLRLDQVGVPFSIAKNLTFPETVTAYNIEEMQQLVENGPDEYPDAKYIQ 332
Query: 74 NEDGSVVRIS 83
+DG V ++
Sbjct: 333 RDDGYQVNLA 342
>gi|315230006|ref|YP_004070442.1| DNA-directed RNA polymerase subunit A' [Thermococcus barophilus MP]
gi|315183034|gb|ADT83219.1| DNA-directed RNA polymerase subunit A' [Thermococcus barophilus MP]
Length = 906
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 138/274 (50%), Gaps = 50/274 (18%)
Query: 356 IRKREQG-----YVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVV 410
+R+ EQG +M +EV +K+ + +P+L E + M + L V
Sbjct: 168 LRRDEQGNEYKHRMMPTEVRDRLEKIPDRD-------LPLLGLHPEKSRPEWMVLTVLPV 220
Query: 411 PPNNLRP-LSMEQMPPVEHS-RNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIR 468
PP +RP +++E E +KL I+ + N+ ++++ + A + I
Sbjct: 221 PPVTVRPSITLESGIRAEDDLTHKLVD------------IIRINNRLKTNIEAGAPQLI- 267
Query: 469 GDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTG--------AHQIDGLKQMLDGKTGMI 520
+++ W LQY+V ++ N+T+G + L Q L GK G
Sbjct: 268 -------IEDLWDLLQYHVTTYIN-----NETSGVPAAKHKSGRPLKTLAQRLKGKEGRF 315
Query: 521 RQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGP 580
R N+ GKRVNF+ R+VI+PDP L+I+ +GVPL A LT P VT +N+ LRKMV+NGP
Sbjct: 316 RGNLSGKRVNFSARTVISPDPMLSINEVGVPLAIAMELTVPEKVTDFNIEKLRKMVLNGP 375
Query: 581 NVYPGANMIQNEDGSVVRISSSQAVQRESLAKRL 614
YPGAN + + G +R+ S RE++A+ L
Sbjct: 376 EKYPGANYVIDPQGRRIRLMES---NRETIAEML 406
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 55/84 (65%), Gaps = 3/84 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L+I+ +GVPL A LT P VT +N+ LRKMV+NGP YPGAN +
Sbjct: 326 FSARTVISPDPMLSINEVGVPLAIAMELTVPEKVTDFNIEKLRKMVLNGPEKYPGANYVI 385
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ G +R+ S RE++A+ L
Sbjct: 386 DPQGRRIRLMES---NRETIAEML 406
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 66/119 (55%), Gaps = 1/119 (0%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHI 191
QE++++S ++ P T++ G+ I GGL D +G I + G C TCG Y C GH GHI
Sbjct: 19 QEIRKMSAAEITVPDTYDDDGYPIEGGLMDKRLGVI-DPGLRCETCGARYGDCPGHFGHI 77
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
EL PVI+ F + + +L+ +C C +I + ++ + +L+ T+ K ++E
Sbjct: 78 ELARPVIHVGFAKTIYRILESTCRECGRIKLTDEEIEEYMKKFELIGDRKKTKDKLIKE 136
>gi|133325|sp|P28364.1|RPB1_EUPOC RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase III largest subunit
gi|2673850|emb|CAA47068.1| DNA-directed RNA polymerase II largest subunit [Euplotes
octocarinatus]
Length = 478
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 98/173 (56%), Gaps = 12/173 (6%)
Query: 446 SVIMAMKNKEQSDLLSEALKGIRGD--------TLNNKLQNSWHELQYNVDLLMD----A 493
SV M +++ DL + + ++ + T N+ + ++ LQ+ L+D
Sbjct: 244 SVCMGSNIRQEDDLTHQYQQILKANNQLRKHLSTANHIINENYQLLQFYCATLIDNEQAG 303
Query: 494 KLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLE 553
++ +G I ++ L GK G +R N+MGKRV+F+ R+VIT DP L++D +GVP
Sbjct: 304 QMVSRHKSGGKAIKAIRARLKGKEGRLRGNLMGKRVDFSARTVITCDPTLDLDQLGVPRS 363
Query: 554 FAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQ 606
A+ +T P VTP N+ +RK+VINGPN +PGA I+ E G ++ +S ++ +
Sbjct: 364 IAENITIPEVVTPQNIDEMRKLVINGPNKWPGAKYIKGEGGKMIDLSYAKTTE 416
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 51/76 (67%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+ +T P VTP N+ +RK+VINGPN +PGA I+
Sbjct: 341 FSARTVITCDPTLDLDQLGVPRSIAENITIPEVVTPQNIDEMRKLVINGPNKWPGAKYIK 400
Query: 74 NEDGSVVRISSSQAVQ 89
E G ++ +S ++ +
Sbjct: 401 GEGGKMIDLSYAKTTE 416
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 55/91 (60%), Gaps = 2/91 (2%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHI 191
+E++ +SVV+V + +++ G GG+ DL MG + E+ C+TC + +C GH GHI
Sbjct: 28 KEIQAMSVVQVENEKIYDN-GIPTDGGINDLRMGTM-EKAMRCSTCQGDSKECPGHFGHI 85
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKINI 222
EL PV + F V+ +LK CF C+K+ I
Sbjct: 86 ELAQPVFHIGFIDLVKKILKCVCFNCNKLLI 116
>gi|58268624|ref|XP_571468.1| DNA-directed RNA polymerase iii largest subunit [Cryptococcus
neoformans var. neoformans JEC21]
gi|57227703|gb|AAW44161.1| DNA-directed RNA polymerase iii largest subunit, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 1466
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 83/127 (65%), Gaps = 2/127 (1%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRS 535
+ ++W L V L ++++ +T G+ I G Q L GK G R N+ GKRV+F+GR+
Sbjct: 312 ISSNWEVLGQAVALYINSQAPGMQTIGSKPIRGFVQRLKGKQGRFRGNLSGKRVDFSGRT 371
Query: 536 VITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ--NED 593
VI PDP L ID + VP + A L+YP VT +N+ L+R+ +ING ++PGAN+++ +E+
Sbjct: 372 VIGPDPNLRIDEVAVPEKVAVKLSYPERVTDYNLQLMRQAIINGSKLHPGANVLERKHEN 431
Query: 594 GSVVRIS 600
GS VRIS
Sbjct: 432 GSTVRIS 438
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 51/72 (70%), Gaps = 2/72 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI PDP L ID + VP + A L+YP VT +N+ L+R+ +ING ++PGAN+++
Sbjct: 367 FSGRTVIGPDPNLRIDEVAVPEKVAVKLSYPERVTDYNLQLMRQAIINGSKLHPGANVLE 426
Query: 74 --NEDGSVVRIS 83
+E+GS VRIS
Sbjct: 427 RKHENGSTVRIS 438
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 158 GLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLC 217
G D MGP +E+G C TCG + KC GH G+I+L +PV + +FR +L C C
Sbjct: 64 GPLDARMGP-NEKGKKCATCGEDTQKCVGHYGYIKLVLPVFHIGYFRPTINMLSCICKTC 122
Query: 218 HKINIPATSQLLFINQIK 235
++ +P T + F+ + +
Sbjct: 123 ARVLLPETERASFLKRFR 140
>gi|321260548|ref|XP_003194994.1| DNA-directed RNA polymerase III largest subunit [Cryptococcus
gattii WM276]
gi|317461466|gb|ADV23207.1| DNA-directed RNA polymerase III largest subunit, putative
[Cryptococcus gattii WM276]
Length = 1463
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 83/127 (65%), Gaps = 2/127 (1%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRS 535
+ ++W L V L ++++ +T G+ I G Q L GK G R N+ GKRV+F+GR+
Sbjct: 312 ISSNWEVLGQAVALYINSQAPGMQTIGSKPIRGFVQRLKGKQGRFRGNLSGKRVDFSGRT 371
Query: 536 VITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ--NED 593
VI PDP L ID + VP + A L+YP VT +N+ L+R+ +ING ++PGAN+++ +E+
Sbjct: 372 VIGPDPNLRIDEVAVPEKVAVKLSYPERVTDYNLQLMRQAIINGSKLHPGANVLERKHEN 431
Query: 594 GSVVRIS 600
GS VRIS
Sbjct: 432 GSTVRIS 438
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 51/72 (70%), Gaps = 2/72 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI PDP L ID + VP + A L+YP VT +N+ L+R+ +ING ++PGAN+++
Sbjct: 367 FSGRTVIGPDPNLRIDEVAVPEKVAVKLSYPERVTDYNLQLMRQAIINGSKLHPGANVLE 426
Query: 74 --NEDGSVVRIS 83
+E+GS VRIS
Sbjct: 427 RKHENGSTVRIS 438
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 136 QLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPV 195
Q+S+ +++ S + G L D MGP +E+G C TCG + KC GH G+I+L +
Sbjct: 43 QVSIAELYQNNEDGSRTTALQGPL-DARMGP-NEKGKKCATCGEDTQKCVGHYGYIKLVL 100
Query: 196 PVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
PV + +FR +L C C ++ +P T + F+ + +
Sbjct: 101 PVFHIGYFRPTINMLSCICKTCARVLLPETERASFLKRFR 140
>gi|374724391|gb|EHR76471.1| DNA-directed RNA polymerase subunit A [uncultured marine group II
euryarchaeote]
Length = 1044
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 78/133 (58%), Gaps = 13/133 (9%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTG--------AHQIDGLKQMLDGKTGMIRQNMMGK 527
+++ W LQY+V D N+T+G + L Q L GK G R N+ GK
Sbjct: 272 VEDLWELLQYHVTTYFD-----NQTSGIPPARHRSGRTLKTLTQRLKGKEGRFRSNLSGK 326
Query: 528 RVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGAN 587
RVNF RSVI+PDPYL ++ +GVP + AK LT P+ VT N +R+M++ GP+V+PG N
Sbjct: 327 RVNFCARSVISPDPYLGVNEVGVPTKIAKELTVPIRVTSRNREQMRQMILRGPDVHPGVN 386
Query: 588 MIQNEDGSVVRIS 600
I DG VRI+
Sbjct: 387 YIIRGDGRRVRIN 399
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 48/70 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDPYL ++ +GVP + AK LT P+ VT N +R+M++ GP+V+PG N I
Sbjct: 330 FCARSVISPDPYLGVNEVGVPTKIAKELTVPIRVTSRNREQMRQMILRGPDVHPGVNYII 389
Query: 74 NEDGSVVRIS 83
DG VRI+
Sbjct: 390 RGDGRRVRIN 399
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 133 EVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIE 192
E++++S V+V + T+ GH GL D MG I E G C T Y + GH GHI+
Sbjct: 5 EIRKMSAVEVKTADTYKDDGHAYRQGLMDPHMGVI-EPGLVCPTDNCKYDESPGHFGHIQ 63
Query: 193 LPVPVINTLFFRDVQLLLKLSCFLCHKI 220
L +PV++ F ++ LK +C C +I
Sbjct: 64 LELPVMHIGFVNLIKTALKATCSKCSEI 91
>gi|146302819|ref|YP_001190135.1| DNA-directed RNA polymerase subunit A' [Metallosphaera sedula DSM
5348]
gi|145701069|gb|ABP94211.1| DNA-directed RNA polymerase, subunit A' [Metallosphaera sedula DSM
5348]
Length = 886
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 82/142 (57%), Gaps = 5/142 (3%)
Query: 476 LQNSWHELQYNVDLLMDAK---LNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFA 532
+++ W LQY+V D + L +K + L Q L GK G R N+ GKRV+F+
Sbjct: 268 VEDLWDLLQYHVATYFDNEIPGLPTSKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFS 327
Query: 533 GRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
R+VI+PDP ++ID +GVP + A+ LT P VT WN+ +R+ VINGP+ +PGAN +
Sbjct: 328 ARTVISPDPNISIDEVGVPYDVAQILTVPEKVTKWNIERMRQYVINGPDKWPGANYVVRP 387
Query: 593 DGSVVRISSSQAVQRESLAKRL 614
DG RI R+ LA L
Sbjct: 388 DGR--RIDLRYVKDRKELAATL 407
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP ++ID +GVP + A+ LT P VT WN+ +R+ VINGP+ +PGAN +
Sbjct: 326 FSARTVISPDPNISIDEVGVPYDVAQILTVPEKVTKWNIERMRQYVINGPDKWPGANYVV 385
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
DG RI R+ LA L
Sbjct: 386 RPDGR--RIDLRYVKDRKELAATL 407
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 133 EVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIE 192
E++++SV + + ++ G I G + D +G I E G C CGN C GH GHIE
Sbjct: 24 EIRKMSVTAIITADVYDEDGTPIEGSVMDSRLG-IIEPGQKCPICGNVIGNCPGHFGHIE 82
Query: 193 LPVPVINTLFFRDVQLLLKLSCFLCHKINI 222
L PVI+ F + V LL+ +C C ++ I
Sbjct: 83 LVRPVIHVGFVKHVYDLLRSTCRRCGRVKI 112
>gi|226876243|gb|ACO89442.1| RNA polymerase II largest subunit, partial [Anthracothecium nanum]
Length = 319
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 75/119 (63%), Gaps = 2/119 (1%)
Query: 480 WHELQY-NVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
WH Y N D+ L TG I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 191 WHVATYMNNDIAGMDGLKAQHKTG-RPIKSIRARLKGKDGRLRQNLMGKRVDFSARTVIT 249
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L++D +GVP A+TLTYP VTP+NV L+++V NGP +PGA + +DG+ +
Sbjct: 250 GDPNLSLDEVGVPRSIARTLTYPEVVTPFNVDKLKRLVANGPTEHPGARFVVRDDGTRI 308
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 47/67 (70%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+NV L+++V NGP +PGA +
Sbjct: 242 FSARTVITGDPNLSLDEVGVPRSIARTLTYPEVVTPFNVDKLKRLVANGPTEHPGARFVV 301
Query: 74 NEDGSVV 80
+DG+ +
Sbjct: 302 RDDGTRI 308
>gi|156841103|ref|XP_001643927.1| hypothetical protein Kpol_1016p9 [Vanderwaltozyma polyspora DSM
70294]
gi|156114557|gb|EDO16069.1| hypothetical protein Kpol_1016p9 [Vanderwaltozyma polyspora DSM
70294]
Length = 1460
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 111/212 (52%), Gaps = 25/212 (11%)
Query: 386 CLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLK 445
C + +D+T + + R L PP +RP M Q P + + + L
Sbjct: 239 CELLGIDSTVKAGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVK--------LT 290
Query: 446 SVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDA-KLNINKTTGAH 504
++ S L+ L+ +G ++NN +++ W LQ +V + +++ +N + GA
Sbjct: 291 EIVWT------SSLIKAGLE--KGISINNMMEH-WDYLQLSVAMYINSDSVNPSMMPGAS 341
Query: 505 Q-------IDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKT 557
I G Q L GK G R N+ GKRV+F+GR+VI+PDP L+ID + VP AK
Sbjct: 342 SGGAKAKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKV 401
Query: 558 LTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 589
LTYP VT +N L+ +VINGPNV+PGAN I
Sbjct: 402 LTYPEKVTRYNREKLQALVINGPNVHPGANYI 433
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 42/59 (71%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 72
F R+VI+PDP L+ID + VP AK LTYP VT +N L+ +VINGPNV+PGAN I
Sbjct: 375 FSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNREKLQALVINGPNVHPGANYI 433
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 3/129 (2%)
Query: 109 MKEKIITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGP 166
MKE +++ L+ + ++ S V+V + F+ P GG D MG
Sbjct: 1 MKEVVVSETPKKISGLEFSALSASDIVAQSEVEVSTRDLFDLENGRAPKIGGALDPKMG- 59
Query: 167 ISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATS 226
+S CTTC N C GH GHI+L +PV + +F+ +L+ C C I + T
Sbjct: 60 VSSSSMECTTCHGNLASCHGHFGHIKLALPVFHVGYFKATIQILQGICKNCSSILLNDTD 119
Query: 227 QLLFINQIK 235
+ F+++++
Sbjct: 120 RRDFLHELR 128
>gi|157741614|gb|ABV69512.1| RNA polymerase II largest subunit, partial [Verrucaria tristis]
Length = 988
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 75/118 (63%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 211 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 270
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L++D +GVP A+TLTYP VTP+N+ L+++V NGP +PGA I E G +
Sbjct: 271 DPNLSLDEVGVPRSIARTLTYPETVTPFNLDRLKRLVTNGPEHHPGARYIIREQGERI 328
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 45/67 (67%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N+ L+++V NGP +PGA I
Sbjct: 262 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPFNLDRLKRLVTNGPEHHPGARYII 321
Query: 74 NEDGSVV 80
E G +
Sbjct: 322 REQGERI 328
>gi|325969566|ref|YP_004245758.1| DNA-directed RNA polymerase subunit A' [Vulcanisaeta moutnovskia
768-28]
gi|323708769|gb|ADY02256.1| DNA-directed RNA polymerase subunit A' [Vulcanisaeta moutnovskia
768-28]
Length = 891
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 59/138 (42%), Positives = 85/138 (61%), Gaps = 5/138 (3%)
Query: 480 WHELQYNVDLLMDAKL-NIN--KTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSV 536
W LQY+V + +L N+ K + L Q L GK G R ++ GKRV+F+ R+V
Sbjct: 281 WDLLQYHVATYFNNELPNLPPVKHRSGRPLKTLAQRLKGKEGRFRGSLSGKRVDFSSRTV 340
Query: 537 ITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSV 596
I+PDP L+I+ +GVP++ AKTLT P+ VT WN+ L+R++V+NGP V+PGAN + DG
Sbjct: 341 ISPDPNLSINEVGVPIDIAKTLTVPMMVTEWNLELVRQLVLNGPEVWPGANYVIYPDGR- 399
Query: 597 VRISSSQAVQRESLAKRL 614
R+ R LA +L
Sbjct: 400 -RVDLRYFRDRRELANKL 416
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 57/84 (67%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L+I+ +GVP++ AKTLT P+ VT WN+ L+R++V+NGP V+PGAN +
Sbjct: 335 FSSRTVISPDPNLSINEVGVPIDIAKTLTVPMMVTEWNLELVRQLVLNGPEVWPGANYVI 394
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
DG R+ R LA +L
Sbjct: 395 YPDGR--RVDLRYFRDRRELANKL 416
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 64/118 (54%), Gaps = 5/118 (4%)
Query: 107 AIMKEKIITRQEVVP----EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDL 162
A EK+ R+E +P + +K + ++ LSV+++ + T++ G + GGL D
Sbjct: 2 ATQTEKVSVREEEIPLKTIKAIKFSILSPDIIRSLSVMEITTSETYDEAGRPMVGGLMDR 61
Query: 163 AMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKI 220
+G + E G C TCGN KC GH G IEL PVI+ + + V LL+ +C C +I
Sbjct: 62 RLG-VVEPGARCETCGNPPDKCPGHFGRIELARPVIHVEYAKYVHDLLRTTCRECGRI 118
>gi|302673160|ref|XP_003026267.1| hypothetical protein SCHCODRAFT_71335 [Schizophyllum commune H4-8]
gi|300099948|gb|EFI91364.1| hypothetical protein SCHCODRAFT_71335 [Schizophyllum commune H4-8]
Length = 1402
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 59/139 (42%), Positives = 85/139 (61%), Gaps = 3/139 (2%)
Query: 475 KLQNSWHELQYNVDLLMDAKL-NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
+ W LQ +V + ++++L + G I G Q L GK G R N+ GKRV+F+G
Sbjct: 299 QFMEQWEFLQLSVAMYINSELPGVPSQPGQRPIRGFVQRLKGKQGRFRGNLSGKRVDFSG 358
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI-QNE 592
R+VI+PDP L ID + VP AK LTYP VT N+ LRK V+NGP+V+PGAN + + E
Sbjct: 359 RTVISPDPNLRIDEVAVPERVAKILTYPERVTVHNMEGLRKAVLNGPDVHPGANFVARGE 418
Query: 593 DGSVVRISSSQAVQRESLA 611
+ ++ + +AV E+LA
Sbjct: 419 NKKFLKFGNRKAVA-ENLA 436
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 54/82 (65%), Gaps = 2/82 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI- 72
F R+VI+PDP L ID + VP AK LTYP VT N+ LRK V+NGP+V+PGAN +
Sbjct: 356 FSGRTVISPDPNLRIDEVAVPERVAKILTYPERVTVHNMEGLRKAVLNGPDVHPGANFVA 415
Query: 73 QNEDGSVVRISSSQAVQRESLA 94
+ E+ ++ + +AV E+LA
Sbjct: 416 RGENKKFLKFGNRKAVA-ENLA 436
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 60/128 (46%), Gaps = 2/128 (1%)
Query: 109 MKEKIITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHT-IPGGLYDLAMGPI 167
MKE + + V + L+ + Q+ +LS ++ + + + G+ D +G
Sbjct: 1 MKEPVHHKDPKVIKQLQFSLFNPQDTVKLSEFEITHRDLYTATDRLPVKDGVLDRRLG-T 59
Query: 168 SERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQ 227
+++ C TCG + C GH +I+L VPV + +F+ +L+ C C ++ + +
Sbjct: 60 TDKSAFCETCGQSSVNCVGHYAYIKLCVPVFHIGYFKHTIGILQCICKTCARVLLEEPER 119
Query: 228 LLFINQIK 235
F+ + +
Sbjct: 120 RTFLKRFR 127
>gi|255582063|ref|XP_002531828.1| DNA-directed RNA polymerase III largest subunit, putative [Ricinus
communis]
gi|223528524|gb|EEF30548.1| DNA-directed RNA polymerase III largest subunit, putative [Ricinus
communis]
Length = 1383
Score = 108 bits (271), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 111/213 (52%), Gaps = 21/213 (9%)
Query: 403 MFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSE 462
+ I ++ VPP ++RP ++ + N + + LK +I A + L E
Sbjct: 223 LIITNIAVPPISIRPSVFTD--GLQSNENDITER-------LKQIIQA-----NASLRME 268
Query: 463 ALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNI-NKTTGAHQIDGLKQMLDGKTGMIR 521
L+G NK +SW LQ V L M++ + + N + G Q L GK G R
Sbjct: 269 LLEG---RMSVNKYLDSWDGLQAAVALYMNSDVRVPNNVEVGKPLSGFVQRLKGKQGRFR 325
Query: 522 QNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPN 581
N+ GKRV F GR+VI+PDP L I + +P+ A+ L+YP V+ N+ LR++V NGP
Sbjct: 326 GNLSGKRVEFTGRTVISPDPNLKITEVAIPIHMARILSYPERVSHHNIEKLRQLVSNGPQ 385
Query: 582 VYPGANMIQNEDGSVVRISSSQAVQRESLAKRL 614
YPGA+ ++ DGS R+ S R+++A+ L
Sbjct: 386 KYPGASTVRYPDGSSKRLIGS---YRKTIAEEL 415
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 3/84 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L I + +P+ A+ L+YP V+ N+ LR++V NGP YPGA+ ++
Sbjct: 335 FTGRTVISPDPNLKITEVAIPIHMARILSYPERVSHHNIEKLRQLVSNGPQKYPGASTVR 394
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
DGS R+ S R+++A+ L
Sbjct: 395 YPDGSSKRLIGS---YRKTIAEEL 415
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%)
Query: 148 FNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQ 207
++S I GL D +GP +++ C TCG ++ +C GH G++ L +PV N + ++
Sbjct: 21 YDSTRKPIQAGLLDPRLGPATKQSSACETCGADFHECPGHFGYLNLVLPVFNVGYMSNIL 80
Query: 208 LLLKLSCFLCHKI 220
+LK C C +I
Sbjct: 81 DILKCICKSCSRI 93
>gi|374633177|ref|ZP_09705544.1| DNA-directed RNA polymerase subunit A'' [Metallosphaera
yellowstonensis MK1]
gi|373524661|gb|EHP69538.1| DNA-directed RNA polymerase subunit A'' [Metallosphaera
yellowstonensis MK1]
Length = 886
Score = 108 bits (271), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 59/142 (41%), Positives = 81/142 (57%), Gaps = 5/142 (3%)
Query: 476 LQNSWHELQYNVDLLMDAK---LNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFA 532
+++ W LQY+V D + L +K + L Q L GK G R N+ GKRV+F+
Sbjct: 268 VEDLWDLLQYHVATYFDNEIPGLPTSKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFS 327
Query: 533 GRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
R+VI+PDP ++ID +GVP + A+ LT P VT WN+ LR+ VINGP +PGAN +
Sbjct: 328 ARTVISPDPNISIDEVGVPYDIAQILTVPEKVTKWNLDRLREYVINGPEKWPGANYVVRP 387
Query: 593 DGSVVRISSSQAVQRESLAKRL 614
DG RI R+ LA L
Sbjct: 388 DGR--RIDLRYVKDRKELASTL 407
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP ++ID +GVP + A+ LT P VT WN+ LR+ VINGP +PGAN +
Sbjct: 326 FSARTVISPDPNISIDEVGVPYDIAQILTVPEKVTKWNLDRLREYVINGPEKWPGANYVV 385
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
DG RI R+ LA L
Sbjct: 386 RPDGR--RIDLRYVKDRKELASTL 407
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 2/114 (1%)
Query: 109 MKEKIITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPIS 168
M E+I +++V I + + E++++SV + + ++ G I G + D +G I
Sbjct: 1 MSERIQLNEKIVKGI-RFGILSPDEIRKMSVTAIITAEVYDEDGTPIEGSVMDPRLGVI- 58
Query: 169 ERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINI 222
E G C CGN C GH GHIEL PVI+ F + V LL+ +C C ++ +
Sbjct: 59 EPGQKCPVCGNVIGNCPGHFGHIELIRPVIHVGFVKHVYDLLRSTCRRCGRVKL 112
>gi|41615286|ref|NP_963784.1| DNA-directed RNA polymerase subunit A' [Nanoarchaeum equitans
Kin4-M]
gi|40069010|gb|AAR39345.1| NEQ503 [Nanoarchaeum equitans Kin4-M]
Length = 870
Score = 108 bits (271), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 85/142 (59%), Gaps = 6/142 (4%)
Query: 476 LQNSWHELQYNVDLLMDAKL-NINKTT--GAHQIDGLKQMLDGKTGMIRQNMMGKRVNFA 532
L+ +W LQY+V D +L N+ K + GL Q + GK G +R+N+ GKRVNF+
Sbjct: 270 LEENWEMLQYHVATYFDNELPNVPKARHRSGRPLKGLLQRIKGKEGRLRRNLAGKRVNFS 329
Query: 533 GRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
R VI+ DP ++ID +GVP + AK LT+P VT WN+ L++ V+NGP GAN + +
Sbjct: 330 ARGVISVDPRIDIDEVGVPEQVAKELTFPEIVTEWNLDWLKQKVLNGPESLDGANYVIDP 389
Query: 593 DGSVVRISSSQAVQRESLAKRL 614
+G +I +E LA+RL
Sbjct: 390 NGRRFKIMEE---NKEELAERL 408
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R VI+ DP ++ID +GVP + AK LT+P VT WN+ L++ V+NGP GAN +
Sbjct: 328 FSARGVISVDPRIDIDEVGVPEQVAKELTFPEIVTEWNLDWLKQKVLNGPESLDGANYVI 387
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ +G +I +E LA+RL
Sbjct: 388 DPNGRRFKIMEE---NKEELAERL 408
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Query: 134 VKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIEL 193
+++LSVV+V P ++ G I G D MG I + G C TCG Y +C GH G IEL
Sbjct: 19 IRKLSVVEVKIPEPYDRDGLPIENGPMDPRMGVI-DPGLRCKTCGGKYGECLGHFGRIEL 77
Query: 194 PVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQI 234
PV + F +++ LL+ +C C + IP + F+ +I
Sbjct: 78 ARPVYHVKFLNEIKRLLQYTCPKCGRAIIPQKLKEQFLKKI 118
>gi|452825408|gb|EME32405.1| DNA-directed RNA polymerase subunit [Galdieria sulphuraria]
Length = 1423
Score = 108 bits (271), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 124/485 (25%), Positives = 200/485 (41%), Gaps = 106/485 (21%)
Query: 132 QEVKQLSVVKVFSPITFNS-LGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
++V + SV ++ S + L GG+ DL +GP S++ C TCG + C +GH
Sbjct: 36 EDVARTSVTRITSRDLYTQPLRKPAAGGVLDLHLGP-SDKTGQCQTCGESLATC---VGH 91
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
F D+ L + H AT FI Q V K+L
Sbjct: 92 ------------FGDISLAFPVF----HMGYFKAT---YFILQCVCKACSRVLLPKELVS 132
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKR 310
++ LR + + + S +++L + K+C ++
Sbjct: 133 EFLHK--LR---SPITRANPSKRKAVLKNILKLC----------------------KSRK 165
Query: 311 KCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVE 370
C FC +P A+ K + K+ D + D K + +RK S+V
Sbjct: 166 HCPFCGSPNGAV-----KKVGVMKLIHDPFSSAKDTEEEKEN--FLRKFHFVADNLSDVS 218
Query: 371 ADFKKLWTN---------------EHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNL 415
+K + E + L + P + + L+ T+ VPP L
Sbjct: 219 PHIQKAVDDLNPLRVLEILSRIPPEDVILLGMDPTYNRPENLLLTN------FPVPPACL 272
Query: 416 RPLSMEQMPPVEHSRN----KLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDT 471
RP S+ P + + + KL + + +C + AM+N + L+
Sbjct: 273 RP-SVCSDPTIGSNEDDLTMKLSEIVHINC----ILQQAMENGGNASLV----------- 316
Query: 472 LNNKLQNSWHELQYNVDLLMDAKLNI--NKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRV 529
+ W LQ ++A L T I GL Q L GK G R N+ GKRV
Sbjct: 317 -----MDDWELLQLECARYINADLPGLPPSATSGKTIRGLCQRLKGKQGRFRGNLSGKRV 371
Query: 530 NFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 589
+F+ R+VI+PDP L+I+ +GVP+ AK LT+P VT +N+ L K V+NGP+++PGAN +
Sbjct: 372 DFSSRTVISPDPNLSIEQVGVPVYVAKQLTFPERVTKYNIKQLSKAVLNGPDIHPGANFV 431
Query: 590 QNEDG 594
+ +DG
Sbjct: 432 ELKDG 436
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 48/64 (75%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L+I+ +GVP+ AK LT+P VT +N+ L K V+NGP+++PGAN ++
Sbjct: 373 FSSRTVISPDPNLSIEQVGVPVYVAKQLTFPERVTKYNIKQLSKAVLNGPDIHPGANFVE 432
Query: 74 NEDG 77
+DG
Sbjct: 433 LKDG 436
>gi|290984021|ref|XP_002674726.1| RNA polymerase II largest subunit [Naegleria gruberi]
gi|284088318|gb|EFC41982.1| RNA polymerase II largest subunit [Naegleria gruberi]
Length = 1650
Score = 108 bits (271), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 92/167 (55%), Gaps = 13/167 (7%)
Query: 446 SVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHE----------LQYNVDLLMDAKL 495
SV+ + +K + DL + I+ + KL S LQY+ M+ ++
Sbjct: 228 SVMHGLNDKAEDDLTHKLADIIKSNATIQKLSKSGSPQHYLDDMIKILQYHCATYMNNEI 287
Query: 496 N---INKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPL 552
+ ++ T + L+Q L GK G +R N+MGKRV+F+ R+VITPDP + ID +GVP
Sbjct: 288 SGVPMSTTKNGRMLKSLRQRLKGKEGRVRGNLMGKRVDFSARTVITPDPTIEIDQVGVPR 347
Query: 553 EFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
A+ +T P VTP+N + ++V+NGP YPGA + +DG+ + +
Sbjct: 348 TIARNMTVPEKVTPFNFERMNELVMNGPETYPGAKYVLRDDGTRIDL 394
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP + ID +GVP A+ +T P VTP+N + ++V+NGP YPGA +
Sbjct: 326 FSARTVITPDPTIEIDQVGVPRTIARNMTVPEKVTPFNFERMNELVMNGPETYPGAKYVL 385
Query: 74 NEDGSVVRI 82
+DG+ + +
Sbjct: 386 RDDGTRIDL 394
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 157 GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFL 216
GGL DL MG ++ C TCG ++C GH GH+ + P N LF + + +LK +C
Sbjct: 50 GGLMDLRMGTVNS-ALSCMTCGCGVSECPGHFGHVNIH-PTFNILFLKTIVKILKCTCVH 107
Query: 217 CHKI 220
C ++
Sbjct: 108 CSRL 111
>gi|330833901|ref|YP_004408629.1| DNA-directed RNA polymerase subunit A' [Metallosphaera cuprina
Ar-4]
gi|329566040|gb|AEB94145.1| DNA-directed RNA polymerase subunit A' [Metallosphaera cuprina
Ar-4]
Length = 886
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 81/142 (57%), Gaps = 5/142 (3%)
Query: 476 LQNSWHELQYNVDLLMDAK---LNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFA 532
+++ W LQY+V D + L +K + L Q L GK G R N+ GKRV+F+
Sbjct: 268 VEDLWDLLQYHVATYFDNEIPGLPTSKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFS 327
Query: 533 GRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
R+VI+PDP ++ID +GVP + A LT P VT WN+ +R+ VINGP+ +PGAN +
Sbjct: 328 ARTVISPDPNISIDEVGVPYDVAMILTVPEKVTKWNIERMREYVINGPDKWPGANYVVRS 387
Query: 593 DGSVVRISSSQAVQRESLAKRL 614
DG RI R+ LA L
Sbjct: 388 DGR--RIDLRYVKDRKELAATL 407
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP ++ID +GVP + A LT P VT WN+ +R+ VINGP+ +PGAN +
Sbjct: 326 FSARTVISPDPNISIDEVGVPYDVAMILTVPEKVTKWNIERMREYVINGPDKWPGANYVV 385
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
DG RI R+ LA L
Sbjct: 386 RSDGR--RIDLRYVKDRKELAATL 407
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 59/114 (51%), Gaps = 2/114 (1%)
Query: 109 MKEKIITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPIS 168
M E+ +++V I + + E++++SV + + ++ G I G + D +G I
Sbjct: 1 MSERYQVNEKIVKGI-RFGILSPDEIRKMSVTAIITADVYDEDGTPIEGSVMDSRLG-II 58
Query: 169 ERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINI 222
E G C CGN C GH GHIEL PVI+ F + V LL+ +C C +I I
Sbjct: 59 EPGQKCPVCGNVIGSCPGHFGHIELVRPVIHVGFVKHVYDLLRSTCKRCGRIKI 112
>gi|84997133|ref|XP_953288.1| DNA-directed RNA polymerase III largest subunit (RPC homologue)
[Theileria annulata strain Ankara]
gi|65304284|emb|CAI76663.1| DNA-directed RNA polymerase III largest subunit (RPC homologue),
putative [Theileria annulata]
Length = 1648
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 115/472 (24%), Positives = 198/472 (41%), Gaps = 104/472 (22%)
Query: 133 EVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIE 192
E KQL ++ P + L + G + + + + + C TCG Y +C GH GH
Sbjct: 109 EHKQLYLINSRKPCLYGPLDSRL--GCFLMVITGCNNKDAICETCGKGYNECVGHWGH-- 164
Query: 193 LPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETL 252
+KL+ + H T Q+L+ K L
Sbjct: 165 -----------------IKLALPVFHIGFFKYTIQILY------------CICKKCSSLL 195
Query: 253 FNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKR-- 310
+EE+++ K +++ + + + + + + K+
Sbjct: 196 LSEESIK----------------------KFYELHKKAQDDPVLKPLIFKNIVQDCKKIS 233
Query: 311 KCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVE 370
KC C +P I +KI+K +DQ + I++ +E G + VE
Sbjct: 234 KCPRCQSPQGVI----KKIVKPI------IDQFM------KLKHIVKYKESGKMKT--VE 275
Query: 371 ADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRP-LSMEQMPPVEHS 429
+ L +HLF + + PV ++ + + I +L PPN +RP +S+ + E
Sbjct: 276 EELNPLVV-KHLF-ENIDPVHSKVLNIVHPEKLIISNLPAPPNCIRPSVSVGEEGTTEDD 333
Query: 430 RNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDL 489
++ I+ S LKS I KN Q+ N W +QY
Sbjct: 334 LTCIFSDIVESNNQLKSYI---KNGAQT----------------NSFIVHWQIIQYQCTR 374
Query: 490 LMD------AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYL 543
++ A+L +++ + G+ Q L GK G R N+ GKRV+F+ R+VI+PDP +
Sbjct: 375 FINSDSPALAQLLLSRRV-SKPGRGIFQRLKGKEGRFRGNLSGKRVDFSARTVISPDPNV 433
Query: 544 NIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGS 595
ID + VP A+ LT+P VT +N+ +L+K ++NG +V+PGA+ + DGS
Sbjct: 434 GIDEVVVPEWIARRLTFPERVTKYNIHVLKKAILNGVSVWPGASYVNKLDGS 485
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 45/65 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP + ID + VP A+ LT+P VT +N+ +L+K ++NG +V+PGA+ +
Sbjct: 421 FSARTVISPDPNVGIDEVVVPEWIARRLTFPERVTKYNIHVLKKAILNGVSVWPGASYVN 480
Query: 74 NEDGS 78
DGS
Sbjct: 481 KLDGS 485
>gi|336476453|ref|YP_004615594.1| DNA-directed RNA polymerase subunit A' [Methanosalsum zhilinae DSM
4017]
gi|335929834|gb|AEH60375.1| DNA-directed RNA polymerase subunit A' [Methanosalsum zhilinae DSM
4017]
Length = 880
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 86/142 (60%), Gaps = 6/142 (4%)
Query: 476 LQNSWHELQYNVDLLMDAKLNI---NKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFA 532
+++ W LQY+V D +++ + + L Q L GK G R ++ GKRVNF+
Sbjct: 262 IEDLWELLQYHVTTYYDNEVSGVPPARHRSGRPLKTLTQRLKGKEGRFRGSLSGKRVNFS 321
Query: 533 GRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
R+V++PDP L+I+ +G+P E AK +T P+ V P N+ +LRK V NG +YPGAN +
Sbjct: 322 ARTVVSPDPNLSINEVGIPFEIAKHMTIPLKVIPRNMEILRKYVANGKTIYPGANYVIRG 381
Query: 593 DGSVVRISSSQAVQRESLAKRL 614
DG V+I+ + A E +A++L
Sbjct: 382 DGRRVKITENNA---EEIAEKL 400
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 56/84 (66%), Gaps = 3/84 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+V++PDP L+I+ +G+P E AK +T P+ V P N+ +LRK V NG +YPGAN +
Sbjct: 320 FSARTVVSPDPNLSINEVGIPFEIAKHMTIPLKVIPRNMEILRKYVANGKTIYPGANYVI 379
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
DG V+I+ + A E +A++L
Sbjct: 380 RGDGRRVKITENNA---EEIAEKL 400
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
+K + +EV+++S+ + + T++ G+ I GL DL +G I + G C +CG +
Sbjct: 14 IKFGLISPREVRKMSITPIITADTYDDDGYPIDMGLMDLRLGVI-DPGLKCKSCGGRAGE 72
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLL 237
C GH GHIEL PVI+ F + ++ +L+ +C C ++ + + + ++ ++ L
Sbjct: 73 CPGHFGHIELVAPVIHIGFNKTIRKILRSTCRKCSRLLLEFSKKEEYLAHLETL 126
>gi|134113452|ref|XP_774751.1| hypothetical protein CNBF4300 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257395|gb|EAL20104.1| hypothetical protein CNBF4300 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 1466
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 82/127 (64%), Gaps = 2/127 (1%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRS 535
+ ++W L V L ++++ +T G+ I G Q L GK G R N+ GKRV+F+GR+
Sbjct: 312 ISSNWEVLGQAVALYINSQAPGMQTIGSKPIRGFVQRLKGKQGRFRGNLSGKRVDFSGRT 371
Query: 536 VITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ--NED 593
VI PDP L ID + VP + A L+YP VT +N+ +R+ +ING ++PGAN+++ +E+
Sbjct: 372 VIGPDPNLRIDEVAVPEKVAVKLSYPERVTDYNLQFMRQAIINGSKLHPGANVLERKHEN 431
Query: 594 GSVVRIS 600
GS VRIS
Sbjct: 432 GSTVRIS 438
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 50/72 (69%), Gaps = 2/72 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI PDP L ID + VP + A L+YP VT +N+ +R+ +ING ++PGAN+++
Sbjct: 367 FSGRTVIGPDPNLRIDEVAVPEKVAVKLSYPERVTDYNLQFMRQAIINGSKLHPGANVLE 426
Query: 74 --NEDGSVVRIS 83
+E+GS VRIS
Sbjct: 427 RKHENGSTVRIS 438
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 158 GLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLC 217
G D MGP +E+G C TCG + KC GH G+I+L +PV + +FR +L C C
Sbjct: 64 GPLDARMGP-NEKGKKCATCGEDTQKCVGHYGYIKLVLPVFHIGYFRPTINMLSCICKTC 122
Query: 218 HKINIPATSQLLFINQIK 235
++ +P T + F+ + +
Sbjct: 123 ARVLLPETERASFLKRFR 140
>gi|323454233|gb|EGB10103.1| hypothetical protein AURANDRAFT_36761 [Aureococcus anophagefferens]
Length = 1738
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 56/122 (45%), Positives = 75/122 (61%), Gaps = 5/122 (4%)
Query: 483 LQYNVDLLMDAKLNI-----NKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVI 537
LQY V+ L D + N + G + ++Q L GK G IR N+MGKRV+F+ R+VI
Sbjct: 234 LQYKVNALFDNEANAKDGVQERQRGGKPLKTIRQRLKGKEGRIRGNLMGKRVDFSARTVI 293
Query: 538 TPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
T DP L+ID +GVP AKTLT P V P+NV L ++V NGP V+PGA + + DG V
Sbjct: 294 TADPNLSIDQVGVPRSIAKTLTVPERVAPYNVHALMELVRNGPEVWPGARYVVHADGRRV 353
Query: 598 RI 599
+
Sbjct: 354 DL 355
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 45/69 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L+ID +GVP AKTLT P V P+NV L ++V NGP V+PGA +
Sbjct: 287 FSARTVITADPNLSIDQVGVPRSIAKTLTVPERVAPYNVHALMELVRNGPEVWPGARYVV 346
Query: 74 NEDGSVVRI 82
+ DG V +
Sbjct: 347 HADGRRVDL 355
>gi|255941856|ref|XP_002561697.1| Pc16g13990 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211586320|emb|CAP94069.1| Pc16g13990 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1733
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 80/131 (61%), Gaps = 3/131 (2%)
Query: 483 LQYNVDLLMDAKLNINKTT---GAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY++ MD + T G + L+ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 307 LQYHIATYMDNDIAGQPTAMQKGNRPVKALRSRLKGKEGRLRQNLMGKRVDFSARTVITG 366
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
DP L +D +GVP A+ LTYP VTP+N+ L+++V NGPN++PGA I ++G + +
Sbjct: 367 DPNLRLDEVGVPYSTARILTYPEVVTPYNIEKLQRLVANGPNLHPGARYIVRDNGERIDL 426
Query: 600 SSSQAVQRESL 610
++ + L
Sbjct: 427 RHAKRAGAQQL 437
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 51/80 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L +D +GVP A+ LTYP VTP+N+ L+++V NGPN++PGA I
Sbjct: 358 FSARTVITGDPNLRLDEVGVPYSTARILTYPEVVTPYNIEKLQRLVANGPNLHPGARYIV 417
Query: 74 NEDGSVVRISSSQAVQRESL 93
++G + + ++ + L
Sbjct: 418 RDNGERIDLRHAKRAGAQQL 437
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTI-PGGLYDLAMGPISERGDPCTTCGNNYT 182
++ + +E+K++SVV + P T + G+ D +G I +R C TC
Sbjct: 19 IQFGLFAPEEIKRMSVVHIEYPETLDDQRQRPRTKGINDPRLGTI-DRQYNCETCEEGPK 77
Query: 183 KCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLD 238
+C GH GHIEL PV + F ++ LL+ C C KI T+ F ++ D
Sbjct: 78 ECPGHFGHIELASPVFHIGFLTKIKKLLETVCHNCGKIKA-NTADSKFTEALRFRD 132
>gi|12642616|gb|AAK00312.1|AF315822_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Monoblepharis
macrandra]
Length = 1603
Score = 108 bits (270), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 77/123 (62%), Gaps = 3/123 (2%)
Query: 480 WHELQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSV 536
W LQY+V +MD + L + + G I G++Q L GK G +R N+MGKRV+F+ R+V
Sbjct: 229 WDLLQYHVATMMDNQISGLPVAQQKGGRPIKGIRQRLKGKEGRLRGNLMGKRVDFSARTV 288
Query: 537 ITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSV 596
IT DP ++ID +GVP + LT+P V +N L+K+V NG N YPGAN + +G +
Sbjct: 289 ITGDPNISIDEVGVPRSICRNLTFPEIVNDYNRDHLQKLVANGTNEYPGANRVIRANGDI 348
Query: 597 VRI 599
V +
Sbjct: 349 VSL 351
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 43/69 (62%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP ++ID +GVP + LT+P V +N L+K+V NG N YPGAN +
Sbjct: 283 FSARTVITGDPNISIDEVGVPRSICRNLTFPEIVNDYNRDHLQKLVANGTNEYPGANRVI 342
Query: 74 NEDGSVVRI 82
+G +V +
Sbjct: 343 RANGDIVSL 351
>gi|1204085|emb|CAA47897.1| DNA-directed RNA polymerase [Euplotes octocarinatus]
Length = 511
Score = 108 bits (270), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 114/220 (51%), Gaps = 22/220 (10%)
Query: 388 IPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSV 447
IP+ D + I M + ++VPP LRP + E RN+ +
Sbjct: 245 IPLFDMNGKNINPCDMIVYYIIVPPVCLRP----SVAVTETKRNE------------DDL 288
Query: 448 IMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAK---LNINKTTGAH 504
+ + Q +++ ++ I G +KL +W++LQY + ++A L +N G
Sbjct: 289 TVKLSEILQLNMIIKSF--IVGGPNYSKLATTWNQLQYTLAQYINADTPGLPLN-MVGNK 345
Query: 505 QIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPV 564
I Q L GK G R N+ GKRV+F+GR+VI+PDP I + VP++ AK T+PV V
Sbjct: 346 AIRAFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNAEIGQVIVPVDMAKIFTFPVCV 405
Query: 565 TPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQA 604
+N+ L+K++ NG V+PGAN +Q ++G ++I + +
Sbjct: 406 NSYNIEFLKKLIKNGSEVHPGANFVQFQNGIKMKIRENNS 445
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 48/74 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP I + VP++ AK T+PV V +N+ L+K++ NG V+PGAN +Q
Sbjct: 372 FSGRTVISPDPNAEIGQVIVPVDMAKIFTFPVCVNSYNIEFLKKLIKNGSEVHPGANFVQ 431
Query: 74 NEDGSVVRISSSQA 87
++G ++I + +
Sbjct: 432 FQNGIKMKIRENNS 445
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPG-GLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
Q++ Q+S ++V ++ + GL D +G +S + D C TC +NY C GH G+
Sbjct: 37 QDIAQISELEVIECKLYDEDSYVPTAYGLLDPRLG-VSTKSDICQTCKSNYVDCPGHYGY 95
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKI 220
I+L +PV + FF+ + +L+ C C +
Sbjct: 96 IKLELPVYHIGFFKHIITILQCICKGCSRF 125
>gi|332796431|ref|YP_004457931.1| DNA-directed RNA polymerase subunit A' [Acidianus hospitalis W1]
gi|332694166|gb|AEE93633.1| DNA-directed RNA polymerase subunit A' [Acidianus hospitalis W1]
Length = 880
Score = 108 bits (270), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 57/142 (40%), Positives = 82/142 (57%), Gaps = 5/142 (3%)
Query: 476 LQNSWHELQYNVDLLMDAK---LNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFA 532
+++ W LQY+V D + L +K + L Q L GK G R N+ GKRV+F+
Sbjct: 262 VEDLWDLLQYHVATYFDNEIPGLPTSKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFS 321
Query: 533 GRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
R+VI+PDP ++ID +GVP++ AK LT P VT WN+ +R+ V+NGP+ +PGAN +
Sbjct: 322 SRTVISPDPNISIDEVGVPIDIAKILTVPERVTKWNIERMREYVLNGPDKWPGANYVIKP 381
Query: 593 DGSVVRISSSQAVQRESLAKRL 614
DG RI R+ A L
Sbjct: 382 DGR--RIDLRYVKDRKEFASTL 401
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP ++ID +GVP++ AK LT P VT WN+ +R+ V+NGP+ +PGAN +
Sbjct: 320 FSSRTVISPDPNISIDEVGVPIDIAKILTVPERVTKWNIERMREYVLNGPDKWPGANYVI 379
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
DG RI R+ A L
Sbjct: 380 KPDGR--RIDLRYVKDRKEFASTL 401
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 109 MKEKIITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPIS 168
M EKII +K + E++++SV + + ++ G I G + D +G I
Sbjct: 1 MSEKIIKG-------VKFGILSPDEIRKMSVTAIITSEVYDEDGTPIEGSVMDPRLGVI- 52
Query: 169 ERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINI 222
E G C TCGN C GH GHIEL PVI+ F + + LL+ +C C +I +
Sbjct: 53 EPGQRCPTCGNMMGNCPGHFGHIELVKPVIHVGFVKHIYDLLRATCRRCGRIKL 106
>gi|328710964|ref|XP_001945328.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
[Acyrthosiphon pisum]
Length = 1366
Score = 108 bits (270), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 76/117 (64%), Gaps = 2/117 (1%)
Query: 476 LQNSWHELQYNVDLLMDAKLN-INKTTGAHQID-GLKQMLDGKTGMIRQNMMGKRVNFAG 533
L W LQ + L +++ L+ +++T +I G Q L GK G R N+ GKRV+F
Sbjct: 310 LHEDWEYLQLHCALYINSDLSGVSRTMMPKKIARGCVQRLKGKHGRFRGNLSGKRVDFTA 369
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 590
RSVI+PDP L I+ +GVP+ AK LTYP V P N+ L+RK+V+NGP ++PGAN ++
Sbjct: 370 RSVISPDPNLRIEEVGVPVRMAKILTYPQKVCPANIELMRKLVMNGPEIHPGANFVE 426
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 45/60 (75%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP L I+ +GVP+ AK LTYP V P N+ L+RK+V+NGP ++PGAN ++
Sbjct: 367 FTARSVISPDPNLRIEEVGVPVRMAKILTYPQKVCPANIELMRKLVMNGPEIHPGANFVE 426
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 3/109 (2%)
Query: 156 PGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCF 215
P G+ D +G ++++ C TC C GH+G I+L +PV + FF V +L+ C
Sbjct: 55 PYGVLDHKLG-VNQKDATCMTCNKGLNDCPGHLGFIDLQLPVFHVGFFSSVITILQTICK 113
Query: 216 --LCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHP 262
C K+ + ++ F +++ + Y + K +E + +++ P
Sbjct: 114 NPFCAKVLLNEEDRMFFYTKLRNKNLTYTMRKKVFKEVHAKAKKVQICP 162
>gi|26337625|dbj|BAC32498.1| unnamed protein product [Mus musculus]
Length = 262
Score = 108 bits (270), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 99/192 (51%), Gaps = 4/192 (2%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P + LG+ GLYDLA+GP + + C TC ++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYVDYLGNPSANGLYDLALGPADSK-EVCATCVQDFNNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHI+LP+ V N F + LLL+ SC CH + P + L I+Q+++L+ G + +L
Sbjct: 79 GHIDLPLTVYNPFLFDKLYLLLRGSCLSCHMLTCPRAAIYLLISQLRVLEVGALQAVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSR 306
E L F EE ++ + ++ + IL + K E RS VAQ
Sbjct: 139 ERILSRFLEETGDPSAFEIQEELEEYTSKILQNNLLGSQGTHVKNVCESRSKLVAQFWKT 198
Query: 307 HVKRK-CIFCAT 317
H+ K C C T
Sbjct: 199 HMAAKQCPHCKT 210
>gi|157741608|gb|ABV69509.1| RNA polymerase II largest subunit, partial [Wahlenbergiella
striatula]
Length = 999
Score = 108 bits (270), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 108/199 (54%), Gaps = 20/199 (10%)
Query: 403 MFIRSLVVPPNNLRP-LSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLS 461
M ++SL VPP +RP +S++ + + L L +I A +N LL
Sbjct: 157 MILQSLTVPPPPVRPSISVDGSGQGQRGEDDL-------TFKLGDIIRANQN-----LLR 204
Query: 462 EALKGIRGDTLNNKLQNSWHELQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTG 518
+ +G D + +LQ LQY+V MD A L+ + I ++ L GK G
Sbjct: 205 VSAEGA-PDHIAKELQAL---LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEG 260
Query: 519 MIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVIN 578
+RQN+MGKRV+F+ R+VIT DP L++D +GVP A+ LTYP VT +N+ L ++V N
Sbjct: 261 RLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRTIARNLTYPETVTKFNIGRLSQLVAN 320
Query: 579 GPNVYPGANMIQNEDGSVV 597
GPNV+PGA + + G +
Sbjct: 321 GPNVHPGAKYVVRKQGERI 339
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 65/122 (53%), Gaps = 13/122 (10%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+ LTYP VT +N+ L ++V NGPNV+PGA +
Sbjct: 273 FSARTVITGDPNLSLDEVGVPRTIARNLTYPETVTKFNIGRLSQLVANGPNVHPGAKYVV 332
Query: 74 NEDGSVV---RISSSQAVQRESLAKRLITPEDQQHRAIMKEKII--TRQEVVPEILKLKY 128
+ G + + +S+ V+ ++ K R +M E +I RQ + + Y
Sbjct: 333 RKQGERIDLRHMKTSRGVELQTGMK--------VERHLMDEDVILFNRQPXXXRVRVMPY 384
Query: 129 YT 130
T
Sbjct: 385 ST 386
>gi|149794944|gb|ABR31768.1| RNA polymerase II largest subunit [Ceramothyrium carniolicum]
Length = 994
Score = 108 bits (270), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 74/121 (61%), Gaps = 3/121 (2%)
Query: 480 WHELQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSV 536
W LQY++ MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+V
Sbjct: 217 WDLLQYHIATYMDNDIAGLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTV 276
Query: 537 ITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSV 596
IT DP L++D +GVP A+TLTYP VTP+N+ L++ V NGP +PGA + G
Sbjct: 277 ITGDPNLSLDEVGVPRSIARTLTYPETVTPFNIERLKRFVANGPTEHPGARYVIRSTGER 336
Query: 597 V 597
V
Sbjct: 337 V 337
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 43/67 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N+ L++ V NGP +PGA +
Sbjct: 271 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPFNIERLKRFVANGPTEHPGARYVI 330
Query: 74 NEDGSVV 80
G V
Sbjct: 331 RSTGERV 337
>gi|321475339|gb|EFX86302.1| hypothetical protein DAPPUDRAFT_45101 [Daphnia pulex]
Length = 1389
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/144 (41%), Positives = 86/144 (59%), Gaps = 4/144 (2%)
Query: 473 NNKLQNSWHELQYNVDLLMDAKLNINKTT--GAHQIDGLKQMLDGKTGMIRQNMMGKRVN 530
+ K+ W LQ L ++++L+ + GL Q L GK G R N+ GKRVN
Sbjct: 306 SQKILEDWDFLQLQCALYINSQLSGIPLCMQPKKKSRGLVQRLKGKQGRFRGNLSGKRVN 365
Query: 531 FAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 590
F+GR+VI+PDP L ID +GVP AK LTYP V N+ L+RK+V NGP+++PGA ++
Sbjct: 366 FSGRTVISPDPNLRIDQVGVPELIAKLLTYPTLVNEANIELMRKLVRNGPDIHPGAIFLK 425
Query: 591 NEDGSVVRISSSQAVQRESLAKRL 614
+D + R S + RE+LA+ L
Sbjct: 426 EKDSKLTR--SLKYGNRETLARNL 447
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 62/101 (61%), Gaps = 3/101 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID +GVP AK LTYP V N+ L+RK+V NGP+++PGA ++
Sbjct: 366 FSGRTVISPDPNLRIDQVGVPELIAKLLTYPTLVNEANIELMRKLVRNGPDIHPGAIFLK 425
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKII 114
+D + R S + RE+LA+ L D R +M E I+
Sbjct: 426 EKDSKLTR--SLKYGNRETLARNL-KRGDLIERHMMDEDIV 463
Score = 44.7 bits (104), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 158 GLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLC 217
G+ D MG S + C TCG C GH G+I+L +PV + +F+ +L+ C C
Sbjct: 59 GMLDRKMG-TSVKDALCGTCGKGLEDCVGHFGYIDLELPVFHVGYFKATINVLQTICKTC 117
Query: 218 HKI 220
+
Sbjct: 118 SHV 120
>gi|224003141|ref|XP_002291242.1| DNA directed RNA polymerase III, largest subunit [Thalassiosira
pseudonana CCMP1335]
gi|220973018|gb|EED91349.1| DNA directed RNA polymerase III, largest subunit [Thalassiosira
pseudonana CCMP1335]
Length = 1422
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 82/140 (58%), Gaps = 2/140 (1%)
Query: 476 LQNSWHELQYNVDLLMDAKL-NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGR 534
+ W LQ V ++ + + K G I GL Q L GK G R N+ GKRV+F+ R
Sbjct: 329 IMEGWDVLQSQVAQYINGDMPGLKKEMGHKPIRGLCQRLKGKQGRFRGNLSGKRVDFSAR 388
Query: 535 SVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDG 594
+VI+PDP L +D +GVP+ AK +TYP V+ +N+ LR+ V+NGP+V+PGAN+I+ G
Sbjct: 389 TVISPDPNLRVDQVGVPVHVAKIMTYPETVSRYNIEKLRQRVLNGPDVHPGANLIR-PGG 447
Query: 595 SVVRISSSQAVQRESLAKRL 614
+ S RE A+ L
Sbjct: 448 ENSFVKSLAYADRERAAQTL 467
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L +D +GVP+ AK +TYP V+ +N+ LR+ V+NGP+V+PGAN+I+
Sbjct: 385 FSARTVISPDPNLRVDQVGVPVHVAKIMTYPETVSRYNIEKLRQRVLNGPDVHPGANLIR 444
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
G + S RE A+ L
Sbjct: 445 -PGGENSFVKSLAYADRERAAQTL 467
Score = 42.7 bits (99), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 31/154 (20%), Positives = 70/154 (45%), Gaps = 18/154 (11%)
Query: 98 ITPEDQQHRAIMKEKII-----TRQEVVPEI---------LKLKYYTDQEVKQLSVVKVF 143
+ P++ H E+ + + Q ++PE L+ + ++++L+ +V
Sbjct: 1 MAPDNGSHHGNTTERQLPLSHSSNQTLLPEANPTPKQISHLQFGLLSPSDMQRLAEFQVT 60
Query: 144 SPITFNSLGHTIPG--GLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTL 201
S F ++ +P G+ D +G +S++ C TC C GH G+I L +PV +
Sbjct: 61 SRDLF-TMPQRLPARNGVLDPRLG-VSDKVSTCATCKLKLADCAGHFGYIRLALPVFHIG 118
Query: 202 FFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
+ + LL+ C C ++ + + + + +++
Sbjct: 119 YLKHTLNLLQCICKSCSRVLLTDAERKMLLKKMR 152
>gi|50309797|ref|XP_454912.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644047|emb|CAG99999.1| KLLA0E21253p [Kluyveromyces lactis]
Length = 1457
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 118/230 (51%), Gaps = 30/230 (13%)
Query: 373 FKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNK 432
FK++ N+ C + +D+T + + R L PP +RP M Q P + +
Sbjct: 231 FKQIKPND-----CELLGIDSTSKSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDL 285
Query: 433 LYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMD 492
+ L ++ S L+ L+ +G ++NN ++ W LQ V + ++
Sbjct: 286 TVK--------LTEIVWT------SSLIKAGLE--KGISINNMMEQ-WDYLQLAVAMYIN 328
Query: 493 AK------LNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNID 546
+ L + T + I G Q L GK G R N+ GKRV+F+GR+VI+PDP L+ID
Sbjct: 329 SDSVNPSMLPGSSGTKSKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLSID 388
Query: 547 SIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI--QNEDG 594
+ VP AK LTYP VT +N L+++VINGP V+PGAN + +NED
Sbjct: 389 EVAVPDRVAKILTYPEKVTRYNKHKLQQLVINGPKVHPGANYLLKKNEDA 438
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI- 72
F R+VI+PDP L+ID + VP AK LTYP VT +N L+++VINGP V+PGAN +
Sbjct: 373 FSGRTVISPDPNLSIDEVAVPDRVAKILTYPEKVTRYNKHKLQQLVINGPKVHPGANYLL 432
Query: 73 -QNEDG 77
+NED
Sbjct: 433 KKNEDA 438
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 157 GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFL 216
GG D MG S + + CTTC N C GH GHI+L +PV + +F+ +L+ C
Sbjct: 51 GGALDPRMGVSSSQAE-CTTCHGNLASCHGHFGHIKLALPVFHVGYFKATIQILQSVCKG 109
Query: 217 CHKINIPATSQLLFINQIK 235
C + + + F+ +++
Sbjct: 110 CGALLLSEEDKRKFLTELR 128
>gi|226876166|gb|ACO89404.1| RNA polymerase II largest subunit, partial [Ceramothyrium
carniolicum]
Length = 992
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 74/121 (61%), Gaps = 3/121 (2%)
Query: 480 WHELQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSV 536
W LQY++ MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+V
Sbjct: 216 WDLLQYHIATYMDNDIAGLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTV 275
Query: 537 ITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSV 596
IT DP L++D +GVP A+TLTYP VTP+N+ L++ V NGP +PGA + G
Sbjct: 276 ITGDPNLSLDEVGVPRSIARTLTYPETVTPFNIERLKRFVANGPTEHPGARYVIRSTGER 335
Query: 597 V 597
V
Sbjct: 336 V 336
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 43/67 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N+ L++ V NGP +PGA +
Sbjct: 270 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPFNIERLKRFVANGPTEHPGARYVI 329
Query: 74 NEDGSVV 80
G V
Sbjct: 330 RSTGERV 336
>gi|157741520|gb|ABV69465.1| RNA polymerase II largest subunit, partial [Placidium lacinulatum]
Length = 358
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 74/113 (65%), Gaps = 3/113 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + G I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 213 LQYHVATYMDNDIANLDKAQHKGGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 272
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
DP L++D +GVP A+TLTYP VT +N++ L++ V NGP ++PGA I E
Sbjct: 273 DPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKQFVTNGPEMHPGARYIIRE 325
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 43/62 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N++ L++ V NGP ++PGA I
Sbjct: 264 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKQFVTNGPEMHPGARYII 323
Query: 74 NE 75
E
Sbjct: 324 RE 325
>gi|300706227|ref|XP_002995402.1| hypothetical protein NCER_101719 [Nosema ceranae BRL01]
gi|239604482|gb|EEQ81731.1| hypothetical protein NCER_101719 [Nosema ceranae BRL01]
Length = 1612
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/263 (31%), Positives = 128/263 (48%), Gaps = 33/263 (12%)
Query: 355 IIRKREQGYV--MASEVEADFKKLWTNE--HLFLKCLIPVLDTTKELIAT-----DIMFI 405
+I+K G V M E ++D K + E H LK I D+T T D + I
Sbjct: 149 VIKKEGMGLVAFMKGEEDSDGKVILNGERVHNILK-KISDEDSTYLGFDTKYSKPDWLVI 207
Query: 406 RSLVVPPNNLRP-LSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEAL 464
L+VPP ++RP + ME M E I+ + LK L
Sbjct: 208 TVLLVPPPSVRPSIVMEGMLRAEDDLTHKLADIVKANTYLKKY---------------EL 252
Query: 465 KGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTT---GAHQIDGLKQMLDGKTGMIR 521
+G G + + Q LQ+++ ++D L+ I + L GK G +R
Sbjct: 253 EGAPGHVIRDYEQ----LLQFHIATMIDNDLSGQPQALQKSGRPIKSISARLKGKEGRVR 308
Query: 522 QNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPN 581
N+MGKRV+F+ RSVITPD ++++ +GVPLE AK T+P +TP+N+ L ++V NGPN
Sbjct: 309 GNLMGKRVDFSARSVITPDANISLEEVGVPLEIAKIHTFPETITPYNIERLTRLVSNGPN 368
Query: 582 VYPGANMIQNEDGSVVRISSSQA 604
YPGAN + DG + ++ ++
Sbjct: 369 EYPGANYVIRSDGQRIDLNFNRG 391
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 50/74 (67%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVITPD ++++ +GVPLE AK T+P +TP+N+ L ++V NGPN YPGAN +
Sbjct: 318 FSARSVITPDANISLEEVGVPLEIAKIHTFPETITPYNIERLTRLVSNGPNEYPGANYVI 377
Query: 74 NEDGSVVRISSSQA 87
DG + ++ ++
Sbjct: 378 RSDGQRIDLNFNRG 391
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 57/99 (57%), Gaps = 2/99 (2%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
++ ++ +E+++ SVV+V P T + G PGGL DL MG +ER C++C +
Sbjct: 13 IQFGLFSPEEIRKASVVQVIHPETMEN-GFPKPGGLIDLKMG-TTERAFLCSSCEKDNFS 70
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINI 222
C GH GHIEL P+ + + ++ +L+ C+ C KI I
Sbjct: 71 CPGHFGHIELTKPMFHVGYMSKIKKILECVCYYCSKIKI 109
>gi|291419534|gb|ADE05280.1| RNA polymerase II largest subunit [Dendrographa leucophaea f.
minor]
Length = 379
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Query: 480 WHELQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSV 536
W LQY++ MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+V
Sbjct: 221 WDLLQYHIATYMDNDIAGLDRAQHKSGRAIKSIRARLKGKEGRLRQNLMGKRVDFSARTV 280
Query: 537 ITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDG 594
IT DP L++D +GVP A+TLT+P VTP+NV L+ +V NGP +PGA I + G
Sbjct: 281 ITGDPNLSLDEVGVPRSIARTLTFPEKVTPFNVDKLKALVSNGPTEHPGARYIIRDTG 338
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 43/64 (67%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLT+P VTP+NV L+ +V NGP +PGA I
Sbjct: 275 FSARTVITGDPNLSLDEVGVPRSIARTLTFPEKVTPFNVDKLKALVSNGPTEHPGARYII 334
Query: 74 NEDG 77
+ G
Sbjct: 335 RDTG 338
>gi|226876217|gb|ACO89429.1| RNA polymerase II largest subunit, partial [Chaetothyriomycetidae
sp. TRN242]
Length = 980
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/115 (45%), Positives = 76/115 (66%), Gaps = 3/115 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY++ MD A L+ ++ I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 215 LQYHIATYMDNNIAGLSPSQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 274
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDG 594
DP L++D +GVP A+ LTYP VTP+N+ L+K+V NGPN +PGA + ++G
Sbjct: 275 DPNLSLDEVGVPKSIARNLTYPETVTPFNLDKLKKLVANGPNEHPGARYVIRDNG 329
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 45/64 (70%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+ LTYP VTP+N+ L+K+V NGPN +PGA +
Sbjct: 266 FSARTVITGDPNLSLDEVGVPKSIARNLTYPETVTPFNLDKLKKLVANGPNEHPGARYVI 325
Query: 74 NEDG 77
++G
Sbjct: 326 RDNG 329
>gi|226876189|gb|ACO89415.1| RNA polymerase II largest subunit, partial [Exophiala oligosperma]
Length = 315
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 75/118 (63%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY++ MD A L + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 186 LQYHIATYMDNEIAGLEKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 245
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L++D +GVP A+TLTYP VTP+N+ L+++V NGPN +PGA + + G +
Sbjct: 246 DPNLSLDEVGVPRSIARTLTYPETVTPFNLDKLKRLVANGPNEHPGARYVIRDTGERI 303
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 46/67 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N+ L+++V NGPN +PGA +
Sbjct: 237 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPFNLDKLKRLVANGPNEHPGARYVI 296
Query: 74 NEDGSVV 80
+ G +
Sbjct: 297 RDTGERI 303
>gi|38091170|emb|CAE46439.1| RNA polymerase II largest subunit [Cercomonas sp. ATCC 50318]
Length = 417
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 82/125 (65%), Gaps = 3/125 (2%)
Query: 476 LQNSWHELQYNVDLLMDAKLN-INKTT--GAHQIDGLKQMLDGKTGMIRQNMMGKRVNFA 532
LQ+S LQ++V L D +++ + ++T I ++Q L GK G IR N+MGKRV+F+
Sbjct: 219 LQDSADVLQFHVATLFDNEISGLPRSTQRSGKPIKSIRQRLVGKGGRIRGNLMGKRVDFS 278
Query: 533 GRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
R+VIT DP L++D +GVP A LT+P VT +N+ +R++V NGPNV+PGA I +
Sbjct: 279 ARTVITGDPNLSVDQVGVPRSMATNLTFPEMVTRFNIAEMRRLVRNGPNVHPGAKTIIRD 338
Query: 593 DGSVV 597
DG V
Sbjct: 339 DGKKV 343
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 45/67 (67%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A LT+P VT +N+ +R++V NGPNV+PGA I
Sbjct: 277 FSARTVITGDPNLSVDQVGVPRSMATNLTFPEMVTRFNIAEMRRLVRNGPNVHPGAKTII 336
Query: 74 NEDGSVV 80
+DG V
Sbjct: 337 RDDGKKV 343
>gi|401428277|ref|XP_003878621.1| DNA-directed RNA polymerase III largest subunit ,putative
[Leishmania mexicana MHOM/GT/2001/U1103]
gi|322494870|emb|CBZ30173.1| DNA-directed RNA polymerase III largest subunit ,putative
[Leishmania mexicana MHOM/GT/2001/U1103]
Length = 1589
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 102/214 (47%), Gaps = 25/214 (11%)
Query: 403 MFIRSLVVPPNNLRPLSMEQMPPV-EHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLS 461
+ I +L+VPP +RP M + E Y IL SD++S
Sbjct: 253 LLISTLLVPPVCVRPRGMSTTSHIREDDLTTQYNEILIC----------------SDMMS 296
Query: 462 EALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKL-NINKTTGAHQIDGLKQMLDGKTGMI 520
+ G + +W LQ V L+DA L + Q + GK G
Sbjct: 297 D------GTNDAARSVETWELLQTRVARLLDAALPGFPSHLRTVECKSYAQRMKGKQGRF 350
Query: 521 RQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGP 580
R N+ GKRV+F+GRSVI+PDP L ID + VPL A+ LTYP V N+ L+R++V NGP
Sbjct: 351 RGNLSGKRVDFSGRSVISPDPNLRIDELAVPLRVARVLTYPQRVFAGNIQLMRRLVRNGP 410
Query: 581 NVYPGANMIQNEDGSVVRISSSQAVQRESLAKRL 614
+V+PGA + R S A RE++A RL
Sbjct: 411 HVHPGALTVYLSK-ECSRKSLRNARDREAIAARL 443
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP L ID + VPL A+ LTYP V N+ L+R++V NGP+V+PGA +
Sbjct: 361 FSGRSVISPDPNLRIDELAVPLRVARVLTYPQRVFAGNIQLMRRLVRNGPHVHPGALTVY 420
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
R S A RE++A RL
Sbjct: 421 LSK-ECSRKSLRNARDREAIAARL 443
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 8/116 (6%)
Query: 122 EILKLKY--YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGN 179
E+ +KY ++ + +LSV+ I G G+ D +GP S+R C TCG
Sbjct: 21 EVTSIKYSLLSEDMIHRLSVLPCHRVI-----GTEKSFGVNDGRLGP-SDRLSVCNTCGQ 74
Query: 180 NYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
+C GH GHI+L PV + +F V + + C C + + ++++++
Sbjct: 75 RSIECTGHAGHIDLEAPVFHLGYFSAVIRVCRTICKRCSNVLLTREEMEYYLHRLR 130
>gi|226876227|gb|ACO89434.1| RNA polymerase II largest subunit, partial [Chaetothyriales sp.
TRN493]
Length = 353
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 75/118 (63%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY++ MD A L + I L+ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 210 LQYHIATYMDNEIAGLEKAQHKSGRPIKSLRARLKGKEGRLRQNLMGKRVDFSARTVITG 269
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L++D +GVP A+TLT+P VTP+N+ L+++V NGPN +PGA + + G +
Sbjct: 270 DPNLSLDEVGVPRSIARTLTFPETVTPFNLDKLKRLVANGPNEHPGARYVIRDTGERI 327
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 46/67 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLT+P VTP+N+ L+++V NGPN +PGA +
Sbjct: 261 FSARTVITGDPNLSLDEVGVPRSIARTLTFPETVTPFNLDKLKRLVANGPNEHPGARYVI 320
Query: 74 NEDGSVV 80
+ G +
Sbjct: 321 RDTGERI 327
>gi|429217660|ref|YP_007175650.1| DNA-directed RNA polymerase subunit A'' [Caldisphaera lagunensis
DSM 15908]
gi|429134189|gb|AFZ71201.1| DNA-directed RNA polymerase subunit A'' [Caldisphaera lagunensis
DSM 15908]
Length = 888
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 77/117 (65%), Gaps = 3/117 (2%)
Query: 476 LQNSWHELQYNVDLLMDAKL-NINKTT--GAHQIDGLKQMLDGKTGMIRQNMMGKRVNFA 532
++ +W LQ + +D +L NI + + G Q+ + Q L GK G +R N+ GKRVNF+
Sbjct: 271 VEEAWQTLQNVIAAYIDNELPNIYQLSHRGRKQLKTIAQRLKGKEGRLRGNLNGKRVNFS 330
Query: 533 GRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 589
R+VI+PDPY++ID +GVP E AK LT P+ VTP+N+ RK V+NGP +PGA +
Sbjct: 331 ARTVISPDPYISIDEVGVPEEIAKILTLPIVVTPYNIEEARKYVLNGPYNWPGAMFV 387
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 7 NFNHAHV-FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNV 65
N N V F R+VI+PDPY++ID +GVP E AK LT P+ VTP+N+ RK V+NGP
Sbjct: 321 NLNGKRVNFSARTVISPDPYISIDEVGVPEEIAKILTLPIVVTPYNIEEARKYVLNGPYN 380
Query: 66 YPGANMI 72
+PGA +
Sbjct: 381 WPGAMFV 387
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 133 EVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIE 192
E+++++ V V P + + G + GG+ D G I E G+ C CGN C GH G I+
Sbjct: 27 EIRKMAKVTVVRPEIYEADGTPVSGGVRDSHFGAI-EPGERCPVCGNTREDCPGHFGKID 85
Query: 193 LPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFIN 232
L PV+ + ++L+ +C C +I +P + N
Sbjct: 86 LARPVLLPHLGDKINVILQSTCRNCGRILLPDEKITYYTN 125
>gi|157875469|ref|XP_001686126.1| putative DNA-directed RNA polymerase III largest subunit
[Leishmania major strain Friedlin]
gi|68129200|emb|CAJ07737.1| putative DNA-directed RNA polymerase III largest subunit
[Leishmania major strain Friedlin]
Length = 1582
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 102/214 (47%), Gaps = 25/214 (11%)
Query: 403 MFIRSLVVPPNNLRPLSMEQMPPV-EHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLS 461
+ I +L+VPP +RP M + E Y IL SD++S
Sbjct: 253 LLISTLLVPPVCVRPRGMSTTSHIREDDLTTQYNEILIC----------------SDMMS 296
Query: 462 EALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKL-NINKTTGAHQIDGLKQMLDGKTGMI 520
+ G + +W LQ V L+DA L + Q + GK G
Sbjct: 297 D------GTNDAARSVETWELLQTRVARLLDAALPGFPSHLRTVECKSYAQRMKGKQGRF 350
Query: 521 RQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGP 580
R N+ GKRV+F+GRSVI+PDP L ID + VPL A+ LTYP V N+ L+R++V NGP
Sbjct: 351 RGNLSGKRVDFSGRSVISPDPNLRIDELAVPLRVARVLTYPQRVFAGNIQLMRRLVRNGP 410
Query: 581 NVYPGANMIQNEDGSVVRISSSQAVQRESLAKRL 614
+V+PGA + R S A RE++A RL
Sbjct: 411 HVHPGALTVYLSK-ECSRKSLRNARDREAIAARL 443
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP L ID + VPL A+ LTYP V N+ L+R++V NGP+V+PGA +
Sbjct: 361 FSGRSVISPDPNLRIDELAVPLRVARVLTYPQRVFAGNIQLMRRLVRNGPHVHPGALTVY 420
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
R S A RE++A RL
Sbjct: 421 LSK-ECSRKSLRNARDREAIAARL 443
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 8/116 (6%)
Query: 122 EILKLKY--YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGN 179
E+ +KY ++ + +LSV+ I G G+ D +GP S+R C TCG
Sbjct: 21 EVTSIKYSLLSEDTIHRLSVLPCHRVI-----GTEKNFGVNDGRLGP-SDRLSVCNTCGQ 74
Query: 180 NYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
+C GH GHI+L VPV + +F V + + C C + + ++++++
Sbjct: 75 RSIECTGHAGHIDLEVPVFHLGYFSAVIRVCRTICKRCSNVLLTREEMEYYLHRLR 130
>gi|430813213|emb|CCJ29412.1| unnamed protein product [Pneumocystis jirovecii]
Length = 1390
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 83/136 (61%), Gaps = 4/136 (2%)
Query: 459 LLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKL-NINKTTGAHQIDGLKQMLDGKT 517
L+ AL+ +G + N L W LQ V + ++++L I+ + G Q L GK
Sbjct: 292 LIKSALE--KGTPIQN-LMEQWDYLQLCVAMYINSELPGISSQANTKPMRGFCQRLKGKQ 348
Query: 518 GMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVI 577
G R N+ GKRV+F+ R+VI PDP L+ID I +P AK LTYP VT +N+ L+K +I
Sbjct: 349 GRFRGNLSGKRVDFSARTVIGPDPNLSIDQIAIPERIAKILTYPEKVTYYNIEQLKKAII 408
Query: 578 NGPNVYPGANMIQNED 593
NGP+++PGAN I N++
Sbjct: 409 NGPDIHPGANYIMNQE 424
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 45/63 (71%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI PDP L+ID I +P AK LTYP VT +N+ L+K +INGP+++PGAN I
Sbjct: 362 FSARTVIGPDPNLSIDQIAIPERIAKILTYPEKVTYYNIEQLKKAIINGPDIHPGANYIM 421
Query: 74 NED 76
N++
Sbjct: 422 NQE 424
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%)
Query: 168 SERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQ 227
S++ C TCG C GH G+++L +PV + +F+ + +L+ C C KI +
Sbjct: 75 SDKQAICETCGEKIVTCVGHFGYVKLILPVFHIGYFKTIITILQNICKDCSKILLKLKDT 134
Query: 228 LLFINQIK 235
F+ +++
Sbjct: 135 YSFLKELR 142
>gi|206601371|gb|ACI16404.1| RNA polymerase II largest subunit [Staurothele fuscocuprea]
Length = 355
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 211 LQYHVATYMDNDIANLDKAQHKSGRXIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 270
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L++D +GVP A+TLTYP VT +N L+++V+NGP +PGA I E G +
Sbjct: 271 DPNLSLDEVGVPRSIARTLTYPETVTRFNAEKLKQLVVNGPERHPGARYIIREHGERI 328
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 44/67 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N L+++V+NGP +PGA I
Sbjct: 262 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNAEKLKQLVVNGPERHPGARYII 321
Query: 74 NEDGSVV 80
E G +
Sbjct: 322 REHGERI 328
>gi|226876150|gb|ACO89396.1| RNA polymerase II largest subunit, partial [Capronia fungicola]
Length = 984
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 76/118 (64%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY++ MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 211 LQYHIATYMDNEIAGLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 270
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L++D +GVP A+TLTYP VTP+N+ L+++V NGPN +PGA + + G +
Sbjct: 271 DPNLSLDEVGVPRSIARTLTYPETVTPFNLDKLKRLVANGPNEHPGARYVIRDTGERI 328
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 46/67 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N+ L+++V NGPN +PGA +
Sbjct: 262 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPFNLDKLKRLVANGPNEHPGARYVI 321
Query: 74 NEDGSVV 80
+ G +
Sbjct: 322 RDTGERI 328
>gi|213410469|ref|XP_002176004.1| DNA-directed RNA polymerase III complex large subunit Rpc1
[Schizosaccharomyces japonicus yFS275]
gi|212004051|gb|EEB09711.1| DNA-directed RNA polymerase III complex large subunit Rpc1
[Schizosaccharomyces japonicus yFS275]
Length = 1406
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 75/128 (58%), Gaps = 2/128 (1%)
Query: 474 NKLQNSWHELQYNVDLLMDAKLNINKTTG--AHQIDGLKQMLDGKTGMIRQNMMGKRVNF 531
N L W LQ +V L ++++L + + G Q L GK G R N+ GKRV+F
Sbjct: 298 NSLMEQWEFLQLSVALYINSELPGLRPPDMPSKPTRGFCQRLKGKQGRFRGNLSGKRVDF 357
Query: 532 AGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQN 591
+GR+VI+PDP L ID + VPL AK LTYP VT N+ LR V NGP+V+PGAN + +
Sbjct: 358 SGRTVISPDPNLQIDQVAVPLRIAKILTYPEKVTDQNIDALRTRVTNGPDVHPGANYVVD 417
Query: 592 EDGSVVRI 599
D + R
Sbjct: 418 RDTGIKRF 425
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 44/69 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VPL AK LTYP VT N+ LR V NGP+V+PGAN +
Sbjct: 357 FSGRTVISPDPNLQIDQVAVPLRIAKILTYPEKVTDQNIDALRTRVTNGPDVHPGANYVV 416
Query: 74 NEDGSVVRI 82
+ D + R
Sbjct: 417 DRDTGIKRF 425
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 158 GLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLC 217
G D MG ++R C TCG C GH GH+ L +PV N +F+ +L+ C C
Sbjct: 51 GALDRRMG-TTDRNAVCATCGEGVADCIGHFGHVRLALPVFNIGYFKTTLTILQNICKDC 109
Query: 218 HKINIPATSQLLFINQIK 235
+ + + F+ +++
Sbjct: 110 ATVLVSQREKQNFLKELR 127
>gi|159040772|ref|YP_001540024.1| DNA-directed RNA polymerase subunit A' [Caldivirga maquilingensis
IC-167]
gi|157919607|gb|ABW01034.1| DNA-directed RNA polymerase subunit A' [Caldivirga maquilingensis
IC-167]
Length = 889
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 81/138 (58%), Gaps = 5/138 (3%)
Query: 480 WHELQYNVDLLMDAKLNIN---KTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSV 536
W LQ NV +D +L + + G+ Q L GK G R ++ GKRV F+ R+V
Sbjct: 279 WDSLQANVATYIDNELPGGIQARHRSKRPLKGIAQRLKGKEGRFRGSLSGKRVEFSARTV 338
Query: 537 ITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSV 596
I+PDP L+I+ +GVP++ AK LT PVT WN+ L+R +V+NGP +PGAN + DG
Sbjct: 339 ISPDPNLSINEVGVPIDIAKELTVVEPVTEWNIDLMRMLVVNGPETWPGANRVITPDGKK 398
Query: 597 VRISSSQAVQRESLAKRL 614
+ + + R LA+++
Sbjct: 399 IELKVRR--DRSELAQQI 414
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 55/84 (65%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L+I+ +GVP++ AK LT PVT WN+ L+R +V+NGP +PGAN +
Sbjct: 333 FSARTVISPDPNLSINEVGVPIDIAKELTVVEPVTEWNIDLMRMLVVNGPETWPGANRVI 392
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
DG + + + R LA+++
Sbjct: 393 TPDGKKIELKVRR--DRSELAQQI 414
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 60/104 (57%), Gaps = 1/104 (0%)
Query: 134 VKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIEL 193
++++SV++V + T++ G+ + GGL D +G + E C TCGN++ +C GH G IEL
Sbjct: 31 IRKMSVMEVTTSETYDEAGNPVKGGLMDRRLG-VDEPEARCETCGNDWRRCPGHFGRIEL 89
Query: 194 PVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLL 237
PV++ F + + +L+ +C C ++ + + +IK L
Sbjct: 90 VRPVVHPEFVKPIYDILRATCPNCGRLKLTDEEYKRYSERIKRL 133
>gi|367014307|ref|XP_003681653.1| hypothetical protein TDEL_0E01990 [Torulaspora delbrueckii]
gi|359749314|emb|CCE92442.1| hypothetical protein TDEL_0E01990 [Torulaspora delbrueckii]
Length = 1460
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 114/221 (51%), Gaps = 25/221 (11%)
Query: 386 CLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLK 445
C + +D++ + + R L PP +RP M Q P + + + L
Sbjct: 239 CELLGIDSSNKSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVK--------LT 290
Query: 446 SVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDA-KLNINKTTGAH 504
++ S L+ L+ +G ++NN +++ W LQ +V + +++ +N GA
Sbjct: 291 EIVWT------SSLIKSGLE--KGISINNMMEH-WDYLQLSVAMYINSDSVNPAMMPGAS 341
Query: 505 Q-------IDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKT 557
I G Q L GK G R N+ GKRV+F+GR+VI+PDP L+ID + VP AK
Sbjct: 342 SGGGKVKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKV 401
Query: 558 LTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVR 598
LTYP VT +N L++++INGPNV+PGAN + +D R
Sbjct: 402 LTYPEKVTRYNRQKLQQLLINGPNVHPGANYLLKKDEDARR 442
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 46/68 (67%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L+ID + VP AK LTYP VT +N L++++INGPNV+PGAN +
Sbjct: 375 FSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRQKLQQLLINGPNVHPGANYLL 434
Query: 74 NEDGSVVR 81
+D R
Sbjct: 435 KKDEDARR 442
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 157 GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFL 216
GG D MG +S CTTC N C GH GHI+L +PV + +F+ +L+ C
Sbjct: 51 GGALDPKMG-VSSSSLECTTCHGNLASCHGHFGHIKLALPVFHVGYFKATIQILQGICKN 109
Query: 217 CHKINIPATSQLLFINQIK 235
C + + + F+++++
Sbjct: 110 CSAVLLDDHDRRHFLSELR 128
>gi|226876241|gb|ACO89441.1| RNA polymerase II largest subunit, partial [Chaetothyriales sp. H5]
Length = 353
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 75/118 (63%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY++ MD A L + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 210 LQYHIATYMDNEIAGLEKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 269
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L++D +GVP A+TLTYP VTP+N+ L+++V NGPN +PGA + + G +
Sbjct: 270 DPNLSLDEVGVPRSIARTLTYPETVTPFNLDKLKRLVANGPNEHPGARYVIRDTGERI 327
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 46/67 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N+ L+++V NGPN +PGA +
Sbjct: 261 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPFNLDKLKRLVANGPNEHPGARYVI 320
Query: 74 NEDGSVV 80
+ G +
Sbjct: 321 RDTGERI 327
>gi|444314063|ref|XP_004177689.1| hypothetical protein TBLA_0A03720 [Tetrapisispora blattae CBS 6284]
gi|387510728|emb|CCH58170.1| hypothetical protein TBLA_0A03720 [Tetrapisispora blattae CBS 6284]
Length = 1458
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/220 (33%), Positives = 113/220 (51%), Gaps = 24/220 (10%)
Query: 386 CLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLK 445
C + +D+T + + R L PP +RP M Q P + + + L
Sbjct: 239 CELLGIDSTSKSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVK--------LT 290
Query: 446 SVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAK-----LNINKT 500
V+ S L+ L+ +G ++NN +++ W LQ +V + +++ L +
Sbjct: 291 EVVWT------SSLIKAGLE--KGISINNMMEH-WDYLQLSVAMYINSDSVNPLLMPGAS 341
Query: 501 TG--AHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTL 558
TG I G Q L GK G R N+ GKRV+F+GR+VI+PDP L+ID + VP AK L
Sbjct: 342 TGNKVKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVL 401
Query: 559 TYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVR 598
T+P VT +N L+ +V+NGPNV+PGAN + +D R
Sbjct: 402 TFPERVTRYNKRKLQALVLNGPNVHPGANYLLKKDEEARR 441
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 45/68 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L+ID + VP AK LT+P VT +N L+ +V+NGPNV+PGAN +
Sbjct: 374 FSGRTVISPDPNLSIDEVAVPDRVAKVLTFPERVTRYNKRKLQALVLNGPNVHPGANYLL 433
Query: 74 NEDGSVVR 81
+D R
Sbjct: 434 KKDEEARR 441
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 158 GLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLC 217
G D MG +S C TC N C GH GHI+L +PV + +F+ +L+ C C
Sbjct: 52 GALDQRMG-VSSSNLECETCHGNLASCHGHFGHIKLALPVFHVGYFKATIQILQAICKSC 110
Query: 218 HKINIPATSQLLFINQIK 235
+ + + F+++++
Sbjct: 111 AAVLLSDEDKRNFLSELR 128
>gi|226876205|gb|ACO89423.1| RNA polymerase II largest subunit, partial [Chaetothyriales sp.
TRN14]
Length = 350
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 75/118 (63%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY++ MD A L + I L+ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 207 LQYHIATYMDNEIAGLEKAQHKSGRPIKSLRARLKGKEGRLRQNLMGKRVDFSARTVITG 266
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L++D +GVP A+TLT+P VTP+N+ L+++V NGPN +PGA + + G +
Sbjct: 267 DPNLSLDEVGVPRSIARTLTFPETVTPFNLDKLKRLVANGPNEHPGARYVIRDTGERI 324
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 46/67 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLT+P VTP+N+ L+++V NGPN +PGA +
Sbjct: 258 FSARTVITGDPNLSLDEVGVPRSIARTLTFPETVTPFNLDKLKRLVANGPNEHPGARYVI 317
Query: 74 NEDGSVV 80
+ G +
Sbjct: 318 RDTGERI 324
>gi|226876187|gb|ACO89414.1| RNA polymerase II largest subunit, partial [Exophiala nigra]
Length = 358
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 75/118 (63%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY++ MD A L + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 212 LQYHIATYMDNEIAGLEKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 271
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L++D +GVP A+TLTYP VTP+N+ L+++V NGPN +PGA + + G +
Sbjct: 272 DPNLSLDEVGVPRSIARTLTYPETVTPFNLDKLKRLVANGPNEHPGARYVIRDTGERI 329
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 46/67 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N+ L+++V NGPN +PGA +
Sbjct: 263 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPFNLDKLKRLVANGPNEHPGARYVI 322
Query: 74 NEDGSVV 80
+ G +
Sbjct: 323 RDTGERI 329
>gi|302180185|gb|ADK98563.1| RNA polymerase II largest subunit [Psoroglaena abscondita]
Length = 373
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 73/118 (61%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 221 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITS 280
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L++D +GVP A+TLTYP VT +N++ L+ V NGP +PGA + E G +
Sbjct: 281 DPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKAFVTNGPEAHPGARYVIRETGERI 338
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 43/67 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N++ L+ V NGP +PGA +
Sbjct: 272 FSARTVITSDPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKAFVTNGPEAHPGARYVI 331
Query: 74 NEDGSVV 80
E G +
Sbjct: 332 RETGERI 338
>gi|226876158|gb|ACO89400.1| RNA polymerase II largest subunit, partial [Capronia sp. WUC 26]
Length = 983
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 76/118 (64%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY++ MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 220 LQYHIATYMDNEIAGLDRAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 279
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L++D +GVP A+TLTYP VTP+N+ L+++V NGPN +PGA + + G +
Sbjct: 280 DPNLSLDEVGVPRSIARTLTYPETVTPFNLDKLKRLVANGPNEHPGARYVIRDTGERI 337
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 46/67 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N+ L+++V NGPN +PGA +
Sbjct: 271 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPFNLDKLKRLVANGPNEHPGARYVI 330
Query: 74 NEDGSVV 80
+ G +
Sbjct: 331 RDTGERI 337
>gi|226876179|gb|ACO89410.1| RNA polymerase II largest subunit, partial [Exophiala bergeri]
Length = 354
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 75/118 (63%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY++ MD A L + I L+ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 211 LQYHIATYMDNEIAGLEKAQHKSGRPIKSLRARLKGKEGRLRQNLMGKRVDFSARTVITG 270
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L++D +GVP A+TLT+P VTP+N+ L+++V NGPN +PGA + + G +
Sbjct: 271 DPNLSLDEVGVPRSIARTLTFPETVTPFNLDKLKRLVANGPNEHPGARYVIRDTGERI 328
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 46/67 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLT+P VTP+N+ L+++V NGPN +PGA +
Sbjct: 262 FSARTVITGDPNLSLDEVGVPRSIARTLTFPETVTPFNLDKLKRLVANGPNEHPGARYVI 321
Query: 74 NEDGSVV 80
+ G +
Sbjct: 322 RDTGERI 328
>gi|401623626|gb|EJS41719.1| rpo31p [Saccharomyces arboricola H-6]
Length = 1460
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/219 (33%), Positives = 111/219 (50%), Gaps = 27/219 (12%)
Query: 386 CLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLK 445
C + +DTT + R L PP +RP M Q P + + + L
Sbjct: 239 CELLGIDTTVPSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVK--------LT 290
Query: 446 SVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKL--------NI 497
++ S L+ L+ +G ++NN +++ W LQ V + +++ +
Sbjct: 291 EIVWT------SSLIKAGLE--KGISINNMMEH-WDYLQLTVAMYINSDSVNPAMLPGSS 341
Query: 498 NKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKT 557
N I G Q L GK G R N+ GKRV+F+GR+VI+PDP L+ID + VP AK
Sbjct: 342 NGGGKVKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKV 401
Query: 558 LTYPVPVTPWNVTLLRKMVINGPNVYPGANMI--QNEDG 594
LTYP VT +N L+++V+NGPNV+PGAN + +NED
Sbjct: 402 LTYPEKVTRYNRHKLQELVVNGPNVHPGANYLLKKNEDA 440
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 47/66 (71%), Gaps = 2/66 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI- 72
F R+VI+PDP L+ID + VP AK LTYP VT +N L+++V+NGPNV+PGAN +
Sbjct: 375 FSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELVVNGPNVHPGANYLL 434
Query: 73 -QNEDG 77
+NED
Sbjct: 435 KKNEDA 440
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 3/129 (2%)
Query: 109 MKEKIITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGP 166
MKE +++ + L+ + ++ S V+V + F+ P G D MG
Sbjct: 1 MKEVVVSETPKRIKGLEFSALSAADIVAQSEVEVSTRDLFDLEKDRAPKANGALDPKMG- 59
Query: 167 ISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATS 226
+S CTTC N C GH GH++L +PV + +F+ +L+ C C I + T
Sbjct: 60 VSSSSLECTTCHGNLASCHGHFGHLKLALPVFHIGYFKATIQILQGICKNCSSILLSETD 119
Query: 227 QLLFINQIK 235
+ F+++++
Sbjct: 120 KRQFLHELR 128
>gi|226876183|gb|ACO89412.1| RNA polymerase II largest subunit, partial [Exophiala jeanselmei]
Length = 329
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 75/118 (63%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY++ MD A L + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 186 LQYHIATYMDNEIAGLEKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 245
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L++D +GVP A+TLTYP VTP+N+ L+++V NGPN +PGA + + G +
Sbjct: 246 DPNLSLDEVGVPRSIARTLTYPETVTPFNLDKLKRLVANGPNEHPGARYVIRDTGERI 303
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 46/67 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N+ L+++V NGPN +PGA +
Sbjct: 237 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPFNLDKLKRLVANGPNEHPGARYVI 296
Query: 74 NEDGSVV 80
+ G +
Sbjct: 297 RDTGERI 303
>gi|50293727|ref|XP_449275.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528588|emb|CAG62249.1| unnamed protein product [Candida glabrata]
Length = 1459
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 118/223 (52%), Gaps = 35/223 (15%)
Query: 386 CLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRN---KLYQSILYSCG 442
C + +D T + + R + PP +RP M Q P + + KL + I+++
Sbjct: 239 CELLGIDATNKAGRPETYIWRYIPAPPVCIRPSVMMQDSPASNEDDLTVKLTE-IVWTSS 297
Query: 443 SLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNIN---- 498
+K+ I +G ++NN +++ W LQ V + +++ +IN
Sbjct: 298 LIKAGIE------------------KGISINNMMEH-WDYLQMTVAMYINSD-SINPAML 337
Query: 499 --KTTGAHQ---IDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLE 553
+TG + I G Q L GK G R N+ GKRV+F+GR+VI+PDP L+ID + VP
Sbjct: 338 PGSSTGGGKVKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPQL 397
Query: 554 FAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI--QNEDG 594
AK LT+P VT +N+ LR++V NGPNV+PGAN + +NE+
Sbjct: 398 VAKVLTFPEKVTRYNIKKLRQLVQNGPNVHPGANYLLKKNEEA 440
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 47/66 (71%), Gaps = 2/66 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI- 72
F R+VI+PDP L+ID + VP AK LT+P VT +N+ LR++V NGPNV+PGAN +
Sbjct: 375 FSGRTVISPDPNLSIDEVAVPQLVAKVLTFPEKVTRYNIKKLRQLVQNGPNVHPGANYLL 434
Query: 73 -QNEDG 77
+NE+
Sbjct: 435 KKNEEA 440
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 157 GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFL 216
GG D MG +S CTTC N C GH GHI+L +PV + +F+ +L+ C
Sbjct: 51 GGALDPRMG-VSASSMECTTCHGNLASCHGHFGHIKLALPVFHVGYFKATIQILQGICKT 109
Query: 217 CHKINIPATSQLLFINQIK 235
C I + + F+++++
Sbjct: 110 CSAILLSEQDKRHFLSELR 128
>gi|452823901|gb|EME30907.1| DNA-directed RNA polymerase II subunit A, partial [Galdieria
sulphuraria]
Length = 741
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 105/211 (49%), Gaps = 21/211 (9%)
Query: 390 VLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIM 449
+L ++E D M I L VPP ++RP M M + L + G +
Sbjct: 203 ILGFSREQSRPDWMIITILSVPPPHVRPSIM--MDATSRGEDDLTHKL----GDIVKANN 256
Query: 450 AMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAK---LNINKTTGAHQI 506
A+K E+ +G LN +LQ LQY+V M+ + L + +
Sbjct: 257 ALKRLER--------EGAPAHALNEQLQ----LLQYHVATYMNNEIPGLPRSLQRSGRPL 304
Query: 507 DGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTP 566
+ Q L GK G IR N+MGKRV+F+ R+VITPDP + +D +GVP A LTYP VTP
Sbjct: 305 KSISQRLKGKEGRIRGNLMGKRVDFSARTVITPDPNIRLDEVGVPKSIAMNLTYPEVVTP 364
Query: 567 WNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
+ L+ +V NGPN +PGA I +DG +
Sbjct: 365 LSYGRLQALVANGPNEHPGAKYIVRDDGQRI 395
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 42/67 (62%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP + +D +GVP A LTYP VTP + L+ +V NGPN +PGA I
Sbjct: 329 FSARTVITPDPNIRLDEVGVPKSIAMNLTYPEVVTPLSYGRLQALVANGPNEHPGAKYIV 388
Query: 74 NEDGSVV 80
+DG +
Sbjct: 389 RDDGQRI 395
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 58/117 (49%), Gaps = 7/117 (5%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
L+ + +E+++ SV + I F G GGL D +G I +R PC TC +++
Sbjct: 17 LQFGILSPEEIRRYSVAPIQREIAFEQ-GRPKEGGLMDQRLGAI-DRDFPCRTCHSSFLD 74
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINI-----PATSQLLFINQIK 235
C GH GHIEL PV N F +L+ C+ C K+ I S+L I QIK
Sbjct: 75 CPGHFGHIELAQPVYNPGFLASTLKVLRCICYYCSKLLINTEDSSIASRLKQIEQIK 131
>gi|366996196|ref|XP_003677861.1| hypothetical protein NCAS_0H02040 [Naumovozyma castellii CBS 4309]
gi|342303731|emb|CCC71514.1| hypothetical protein NCAS_0H02040 [Naumovozyma castellii CBS 4309]
Length = 1460
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/219 (33%), Positives = 114/219 (52%), Gaps = 27/219 (12%)
Query: 386 CLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLK 445
C + +D+T + + R L PP +RP M Q P + + + L
Sbjct: 239 CELLGIDSTVKSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVK--------LT 290
Query: 446 SVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDA-KLNINKTTGAH 504
++ S L+ L+ +G ++NN +++ W LQ V + +++ +N GA
Sbjct: 291 EIVWT------SSLIKAGLE--KGISINNMMEH-WDYLQLTVAMYINSDSVNPAMLPGAS 341
Query: 505 Q-------IDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKT 557
I G Q L GK G R N+ GKRV+F+GR+VI+PDP L+ID + VP AK
Sbjct: 342 SGGGKVKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKV 401
Query: 558 LTYPVPVTPWNVTLLRKMVINGPNVYPGANMI--QNEDG 594
LT+P VT +N L++++INGPNV+PGAN + +NED
Sbjct: 402 LTFPEKVTRYNKQKLQQLIINGPNVHPGANYLLKKNEDA 440
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 47/66 (71%), Gaps = 2/66 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI- 72
F R+VI+PDP L+ID + VP AK LT+P VT +N L++++INGPNV+PGAN +
Sbjct: 375 FSGRTVISPDPNLSIDEVAVPDRVAKVLTFPEKVTRYNKQKLQQLIINGPNVHPGANYLL 434
Query: 73 -QNEDG 77
+NED
Sbjct: 435 KKNEDA 440
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 157 GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFL 216
GG D MG +S C TC N C GH GHI+L +PV + +F+ +L+ C
Sbjct: 51 GGALDRKMG-VSSSSLECETCHGNLASCHGHFGHIKLALPVFHVGYFKATIQILQGVCKT 109
Query: 217 CHKINIPATSQLLFINQIK 235
C I + + F+ +++
Sbjct: 110 CSAILLNDQDKRQFLTELR 128
>gi|321468694|gb|EFX79678.1| hypothetical protein DAPPUDRAFT_304478 [Daphnia pulex]
Length = 1441
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 115/442 (26%), Positives = 177/442 (40%), Gaps = 127/442 (28%)
Query: 157 GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFL 216
GG+ D G ++ R C TC N +C GH GHI+L PV + FF +L+ C+
Sbjct: 52 GGIMDPRQG-VTNRSARCQTCDGNMNECPGHFGHIDLAKPVFHVGFFEKTIEILRCVCYY 110
Query: 217 CHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSI 276
C K+ L+ N KL +E E+ P + + LV
Sbjct: 111 CSKL-------LVSPNNPKL------------QEIFLKSED---QPGKRMALVHE----- 143
Query: 277 LAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKID 336
L G IC+ D G +E + + + H C +IS +Q +II +K
Sbjct: 144 LCKGKNICEGGDQIGEDEP----ITEDMVGHGG-----CGRSQPSISNRQLEIIAKWK-- 192
Query: 337 KDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKE 396
NLD I+ ++ + A V A FK++ E C I +D
Sbjct: 193 --NLD-------------IVSGAKKLVLTAEHVLAIFKRISDEE-----CAILGMD---- 228
Query: 397 LIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSC--GSLKSVIMAMKNK 454
P RP + ++ SC + + N
Sbjct: 229 ---------------PKYARP-----------------EWMIISCLPVPPPNTRPPVMNG 256
Query: 455 EQSDLLSEALKGIRGDTLNNKLQ-------------NSWHELQYNVDLLMDAKLNINKTT 501
+ D L+ L I +NN+LQ N+ LQ+N+ +L ++
Sbjct: 257 SEHDYLTRKLVDIV--KVNNELQRNEQSGAEDPIIANNIKMLQFNIAMLSNS-------- 306
Query: 502 GAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYP 561
+K L+GK G IR N+MGK V+F+ R+VITPDP L ID +GVP A+ +T+P
Sbjct: 307 -------IKNRLEGKKGRIRGNLMGKLVDFSARTVITPDPNLRIDQVGVPRIIAQNMTFP 359
Query: 562 VPVTPWNVTLLRKMVINGPNVY 583
VT +N+ ++++V G Y
Sbjct: 360 EIVTSFNIEKMQELVQRGEAKY 381
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 34/53 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVY 66
F R+VITPDP L ID +GVP A+ +T+P VT +N+ ++++V G Y
Sbjct: 329 FSARTVITPDPNLRIDQVGVPRIIAQNMTFPEIVTSFNIEKMQELVQRGEAKY 381
>gi|226876231|gb|ACO89436.1| RNA polymerase II largest subunit, partial [Chaetothyriales sp.
TRN506]
Length = 990
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 75/118 (63%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY++ MD A L + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 210 LQYHIATYMDNEIAGLEKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 269
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L++D +GVP A+TLTYP VTP+N+ L+++V NGPN +PGA + + G +
Sbjct: 270 DPNLSLDEVGVPRSIARTLTYPETVTPFNLDKLKRLVANGPNEHPGARYVIRDTGERI 327
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 46/67 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N+ L+++V NGPN +PGA +
Sbjct: 261 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPFNLDKLKRLVANGPNEHPGARYVI 320
Query: 74 NEDGSVV 80
+ G +
Sbjct: 321 RDTGERI 327
>gi|398022082|ref|XP_003864203.1| DNA-directed RNA polymerase III largest subunit , putative
[Leishmania donovani]
gi|322502438|emb|CBZ37521.1| DNA-directed RNA polymerase III largest subunit , putative
[Leishmania donovani]
Length = 1590
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 102/214 (47%), Gaps = 25/214 (11%)
Query: 403 MFIRSLVVPPNNLRPLSMEQMPPV-EHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLS 461
+ I +L+VPP +RP M + E Y IL SD++S
Sbjct: 253 LLISTLLVPPVCVRPRGMSTTNHIREDDLTTQYNEILIC----------------SDMMS 296
Query: 462 EALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKL-NINKTTGAHQIDGLKQMLDGKTGMI 520
+ G + +W LQ V L+DA L + Q + GK G
Sbjct: 297 D------GTNDAARSVETWELLQTRVARLLDAALPGFPSHLRTVECKSYAQRMKGKQGRF 350
Query: 521 RQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGP 580
R N+ GKRV+F+GRSVI+PDP L ID + VPL A+ LTYP V N+ L+R++V NGP
Sbjct: 351 RGNLSGKRVDFSGRSVISPDPNLRIDELAVPLRVARVLTYPQRVFAGNIQLMRRLVRNGP 410
Query: 581 NVYPGANMIQNEDGSVVRISSSQAVQRESLAKRL 614
+V+PGA + R S A RE++A RL
Sbjct: 411 HVHPGALTVYLSK-ECSRKSLRNARDREAIAARL 443
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP L ID + VPL A+ LTYP V N+ L+R++V NGP+V+PGA +
Sbjct: 361 FSGRSVISPDPNLRIDELAVPLRVARVLTYPQRVFAGNIQLMRRLVRNGPHVHPGALTVY 420
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
R S A RE++A RL
Sbjct: 421 LSK-ECSRKSLRNARDREAIAARL 443
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 8/116 (6%)
Query: 122 EILKLKY--YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGN 179
E+ +KY ++ + +LSV+ I G G+ D +GP S+R C TCG
Sbjct: 21 EVTSIKYSLLSEDTIHRLSVLPCHRVI-----GTEKNFGVNDGRLGP-SDRLSVCNTCGQ 74
Query: 180 NYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
+C GH GHI+L VPV + +F V + + C C + + ++++++
Sbjct: 75 RSIECTGHAGHIDLEVPVFHLGYFSAVIRVCRTICKRCSNVLLTREEMEYYLHRLR 130
>gi|146098608|ref|XP_001468425.1| putative DNA-directed RNA polymerase III largest subunit
[Leishmania infantum JPCM5]
gi|134072793|emb|CAM71509.1| putative DNA-directed RNA polymerase III largest subunit
[Leishmania infantum JPCM5]
Length = 1590
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 102/214 (47%), Gaps = 25/214 (11%)
Query: 403 MFIRSLVVPPNNLRPLSMEQMPPV-EHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLS 461
+ I +L+VPP +RP M + E Y IL SD++S
Sbjct: 253 LLISTLLVPPVCVRPRGMSTTNHIREDDLTTQYNEILIC----------------SDMMS 296
Query: 462 EALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKL-NINKTTGAHQIDGLKQMLDGKTGMI 520
+ G + +W LQ V L+DA L + Q + GK G
Sbjct: 297 D------GTNDAARSVETWELLQTRVARLLDAALPGFPSHLRTVECKSYAQRMKGKQGRF 350
Query: 521 RQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGP 580
R N+ GKRV+F+GRSVI+PDP L ID + VPL A+ LTYP V N+ L+R++V NGP
Sbjct: 351 RGNLSGKRVDFSGRSVISPDPNLRIDELAVPLRVARVLTYPQRVFAGNIQLMRRLVRNGP 410
Query: 581 NVYPGANMIQNEDGSVVRISSSQAVQRESLAKRL 614
+V+PGA + R S A RE++A RL
Sbjct: 411 HVHPGALTVYLSK-ECSRKSLRNARDREAIAARL 443
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP L ID + VPL A+ LTYP V N+ L+R++V NGP+V+PGA +
Sbjct: 361 FSGRSVISPDPNLRIDELAVPLRVARVLTYPQRVFAGNIQLMRRLVRNGPHVHPGALTVY 420
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
R S A RE++A RL
Sbjct: 421 LSK-ECSRKSLRNARDREAIAARL 443
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 8/116 (6%)
Query: 122 EILKLKY--YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGN 179
E+ +KY ++ + +LSV+ I G G+ D +GP S+R C TCG
Sbjct: 21 EVTSIKYSLLSEDTIHRLSVLPCHRVI-----GTEKNFGVNDGRLGP-SDRLSVCNTCGQ 74
Query: 180 NYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
+C GH GHI+L VPV + +F V + + C C + + ++++++
Sbjct: 75 RSIECTGHAGHIDLEVPVFHLGYFSAVIRVCRTICKRCSNVLLTREEMEYYLHRLR 130
>gi|206601383|gb|ACI16410.1| RNA polymerase II largest subunit [Polyblastia sp. Savic 3164]
Length = 356
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 79/127 (62%), Gaps = 3/127 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 211 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 270
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
DP L++D +GVP A+ LTYP VTP+NV+ L+ +++ GPN +PGA I E+ + +
Sbjct: 271 DPNLSLDEVGVPRSIARNLTYPETVTPFNVSKLKSLIVRGPNNHPGARYIIRENNERIDL 330
Query: 600 SSSQAVQ 606
+ +Q
Sbjct: 331 RYHKDLQ 337
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 49/76 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+ LTYP VTP+NV+ L+ +++ GPN +PGA I
Sbjct: 262 FSARTVITGDPNLSLDEVGVPRSIARNLTYPETVTPFNVSKLKSLIVRGPNNHPGARYII 321
Query: 74 NEDGSVVRISSSQAVQ 89
E+ + + + +Q
Sbjct: 322 RENNERIDLRYHKDLQ 337
>gi|348508629|ref|XP_003441856.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
[Oreochromis niloticus]
Length = 1390
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/141 (41%), Positives = 82/141 (58%), Gaps = 4/141 (2%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
+ W LQ L ++++L+ A + G Q L GK G R N+ GKRV+F+G
Sbjct: 306 IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
R+VI+PDP L ID + VP+ AK LTYP V N+ L+RK+V NGP+V+PGAN IQN
Sbjct: 366 RTVISPDPNLRIDEVAVPVHVAKILTYPERVNKANLELMRKLVRNGPDVHPGANFIQNRH 425
Query: 594 GSVVRISSSQAVQRESLAKRL 614
+ R + RE +A+ L
Sbjct: 426 TQIKRF--LKYGNREKIAQEL 444
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP+ AK LTYP V N+ L+RK+V NGP+V+PGAN IQ
Sbjct: 363 FSGRTVISPDPNLRIDEVAVPVHVAKILTYPERVNKANLELMRKLVRNGPDVHPGANFIQ 422
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
N + R + RE +A+ L
Sbjct: 423 NRHTQIKRF--LKYGNREKIAQEL 444
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 158 GLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLC 217
G+ D MG SE+ PC TCG N C GH G+++L +P + +F+ +L++ C C
Sbjct: 54 GVLDHRMG-TSEKDRPCLTCGKNLADCLGHYGYLDLELPCFHVGYFKATIGILQMICKTC 112
Query: 218 HKINIPATSQLLFINQIKLLDAGYVTQ 244
+I + +L F++ +K + Y+ +
Sbjct: 113 SRIMLTKEEKLQFMDYLKRPNLAYLQK 139
>gi|226876229|gb|ACO89435.1| RNA polymerase II largest subunit, partial [Chaetothyriales sp.
TRN497]
Length = 990
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 75/118 (63%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY++ MD A L + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 210 LQYHIATYMDNEIAGLEKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 269
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L++D +GVP A+TLTYP VTP+N+ L+++V NGPN +PGA + + G +
Sbjct: 270 DPNLSLDEVGVPRSIARTLTYPETVTPFNLDKLKRLVANGPNEHPGARYVIRDTGERI 327
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 46/67 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N+ L+++V NGPN +PGA +
Sbjct: 261 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPFNLDKLKRLVANGPNEHPGARYVI 320
Query: 74 NEDGSVV 80
+ G +
Sbjct: 321 RDTGERI 327
>gi|254584114|ref|XP_002497625.1| ZYRO0F09856p [Zygosaccharomyces rouxii]
gi|238940518|emb|CAR28692.1| ZYRO0F09856p [Zygosaccharomyces rouxii]
Length = 1458
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 110/219 (50%), Gaps = 23/219 (10%)
Query: 386 CLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLK 445
C + +D+T + + R L PP +RP M Q P + + + L
Sbjct: 239 CELLGIDSTIKSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVK--------LT 290
Query: 446 SVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMD------AKLNINK 499
V+ S L+ L+ +G ++NN +++ W LQ V + ++ A L+
Sbjct: 291 EVVWT------SSLIKAGLE--KGISINNMMEH-WDYLQLAVAMYINSDSVNPAILSGGT 341
Query: 500 TTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLT 559
I G Q L GK G R N+ GKRV+F+GR+VI+PDP L++D + VP AK LT
Sbjct: 342 GGKVKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLSVDEVAVPDRVAKVLT 401
Query: 560 YPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVR 598
YP VT +N L+++V+NGPN YPGAN + +D R
Sbjct: 402 YPERVTRYNKGKLQQLVVNGPNEYPGANYLLKKDEDARR 440
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 45/68 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L++D + VP AK LTYP VT +N L+++V+NGPN YPGAN +
Sbjct: 373 FSGRTVISPDPNLSVDEVAVPDRVAKVLTYPERVTRYNKGKLQQLVVNGPNEYPGANYLL 432
Query: 74 NEDGSVVR 81
+D R
Sbjct: 433 KKDEDARR 440
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 157 GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFL 216
GG D MG +S C TC N C GH GHI+L +PV + +F+ +L+ C
Sbjct: 51 GGALDPKMG-VSSSSMECQTCHGNLASCHGHFGHIKLALPVFHIGYFKATIQILQGICKE 109
Query: 217 CHKINIPATSQLLFINQIK 235
C I + T + F+++++
Sbjct: 110 CSSILLEDTDKKHFLSELR 128
>gi|432923404|ref|XP_004080458.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
[Oryzias latipes]
Length = 1390
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/141 (41%), Positives = 82/141 (58%), Gaps = 4/141 (2%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
+ W LQ L ++++L+ A + G Q L GK G R N+ GKRV+F+G
Sbjct: 306 IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
R+VI+PDP L ID + VP+ AK LTYP V N+ L+RK+V NGP+V+PGAN IQN
Sbjct: 366 RTVISPDPNLRIDEVAVPVHVAKILTYPEMVNKANLELMRKLVRNGPDVHPGANFIQNRR 425
Query: 594 GSVVRISSSQAVQRESLAKRL 614
+ R + RE +A+ L
Sbjct: 426 NQIKRF--LKYGNREKIAQEL 444
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP+ AK LTYP V N+ L+RK+V NGP+V+PGAN IQ
Sbjct: 363 FSGRTVISPDPNLRIDEVAVPVHVAKILTYPEMVNKANLELMRKLVRNGPDVHPGANFIQ 422
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
N + R + RE +A+ L
Sbjct: 423 NRRNQIKRF--LKYGNREKIAQEL 444
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 64/115 (55%), Gaps = 3/115 (2%)
Query: 132 QEVKQLSVVKVFSPITFN-SLGHT-IPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
++++Q + ++V S ++ HT +P G+ D MG SE+ PC TCG N C GH G
Sbjct: 26 EQMRQQAHIQVVSKNLYSQDTKHTPLPHGVLDHRMG-TSEKDRPCLTCGKNLADCLGHYG 84
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQ 244
+++L +P + +F+ V +L++ C C I + +L F++ +K + Y+ +
Sbjct: 85 YLDLELPCFHVGYFKAVIGILQMICKTCSSIMLTKEEKLQFLDLLKRPNLAYLQK 139
>gi|157741542|gb|ABV69476.1| RNA polymerase II largest subunit, partial [Staurothele drummondii]
Length = 374
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 222 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 281
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L++D +GVP A+TLTYP VT +N L+++V+NGP +PGA I E G +
Sbjct: 282 DPNLSLDEVGVPRSIARTLTYPETVTRFNAEKLKQLVVNGPERHPGARYIIREQGERI 339
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 44/67 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N L+++V+NGP +PGA I
Sbjct: 273 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNAEKLKQLVVNGPERHPGARYII 332
Query: 74 NEDGSVV 80
E G +
Sbjct: 333 REQGERI 339
>gi|84490160|ref|YP_448392.1| DNA-directed RNA polymerase subunit A' [Methanosphaera stadtmanae
DSM 3091]
gi|84373479|gb|ABC57749.1| RpoA1 [Methanosphaera stadtmanae DSM 3091]
Length = 873
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 78/132 (59%), Gaps = 13/132 (9%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTG--------AHQIDGLKQMLDGKTGMIRQNMMGK 527
+++ W LQY+V D N+ +G + L Q L GK G R N+ GK
Sbjct: 258 VEDLWELLQYHVTTYFD-----NEASGVPPARHRSGRPLKTLAQRLKGKEGRFRSNLAGK 312
Query: 528 RVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGAN 587
RVNF+ R+VI+PDP L+I+ +GVP AK +T P+ VT WN+ +++ + NGP+V+PGAN
Sbjct: 313 RVNFSARTVISPDPTLSINEVGVPEMIAKEVTVPIAVTEWNMEKMKEYINNGPDVHPGAN 372
Query: 588 MIQNEDGSVVRI 599
I DG +R+
Sbjct: 373 YIIRPDGRKIRV 384
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L+I+ +GVP AK +T P+ VT WN+ +++ + NGP+V+PGAN I
Sbjct: 316 FSARTVISPDPTLSINEVGVPEMIAKEVTVPIAVTEWNMEKMKEYINNGPDVHPGANYII 375
Query: 74 NEDGSVVRI 82
DG +R+
Sbjct: 376 RPDGRKIRV 384
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Query: 134 VKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIEL 193
++++SV K+ +P T++ G+ I GL D +G I + G C TCG+ C+GH GHI
Sbjct: 21 IRKMSVTKIVTPDTYDEDGYPIESGLMDPRLGVI-DPGLKCRTCGSKGGDCQGHFGHINF 79
Query: 194 PVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
PVI+ F + +L+ +C C ++ + T +L + ++++
Sbjct: 80 ARPVIHVGFADTIHKILRSTCRKCGRVLLTDTEKLEYKDKLE 121
>gi|226876193|gb|ACO89417.1| RNA polymerase II largest subunit, partial [Fonsecaea monophora]
Length = 983
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 75/118 (63%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY++ MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 210 LQYHIATYMDNEIAGLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 269
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L++D +GVP A+TLTYP VTP+ + LR++V NGPN +PGA + + G +
Sbjct: 270 DPNLSLDEVGVPRSIARTLTYPERVTPFTIDRLRRLVRNGPNDHPGARYVIRDTGERI 327
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 45/67 (67%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+ + LR++V NGPN +PGA +
Sbjct: 261 FSARTVITGDPNLSLDEVGVPRSIARTLTYPERVTPFTIDRLRRLVRNGPNDHPGARYVI 320
Query: 74 NEDGSVV 80
+ G +
Sbjct: 321 RDTGERI 327
>gi|149794937|gb|ABR31764.1| RNA polymerase II largest subunit [Exophiala salmonis]
Length = 371
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 75/118 (63%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY++ MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 221 LQYHIATYMDNEIAGLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 280
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L++D +GVP A+TLTYP VTP+N+ L+++V NGP +PGA + + G +
Sbjct: 281 DPNLSLDEVGVPRSIARTLTYPETVTPFNLDKLKRLVANGPTEHPGARYVIRDSGERI 338
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 45/67 (67%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N+ L+++V NGP +PGA +
Sbjct: 272 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPFNLDKLKRLVANGPTEHPGARYVI 331
Query: 74 NEDGSVV 80
+ G +
Sbjct: 332 RDSGERI 338
>gi|410079408|ref|XP_003957285.1| hypothetical protein KAFR_0D05030 [Kazachstania africana CBS 2517]
gi|372463870|emb|CCF58150.1| hypothetical protein KAFR_0D05030 [Kazachstania africana CBS 2517]
Length = 1462
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/219 (33%), Positives = 114/219 (52%), Gaps = 27/219 (12%)
Query: 386 CLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLK 445
C + +D+T + + R L PP +RP M Q P + + + L
Sbjct: 240 CELLGIDSTVKSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTIK--------LT 291
Query: 446 SVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDA-KLNINKTTGAH 504
++ S L+ L+ +G ++NN +++ W LQ V + ++A +N GA
Sbjct: 292 EIVWT------SSLIKAGLE--KGISINNMMEH-WDYLQLTVAMYINADSVNPAMLPGAS 342
Query: 505 Q-------IDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKT 557
I G Q L GK G R N+ GKRV+F+GR+VI+PDP L+ID + VP AK
Sbjct: 343 SGGGKVKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKV 402
Query: 558 LTYPVPVTPWNVTLLRKMVINGPNVYPGANMI--QNEDG 594
LTYP VT +N L+++V+NGPN++PGAN + +NE+
Sbjct: 403 LTYPEKVTRYNRKKLQELVMNGPNIHPGANYLLKKNEEA 441
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 47/66 (71%), Gaps = 2/66 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI- 72
F R+VI+PDP L+ID + VP AK LTYP VT +N L+++V+NGPN++PGAN +
Sbjct: 376 FSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRKKLQELVMNGPNIHPGANYLL 435
Query: 73 -QNEDG 77
+NE+
Sbjct: 436 KKNEEA 441
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 158 GLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLC 217
G D MG +S C TC N C GH GHI+L +PV + +F+ +L+ C C
Sbjct: 52 GALDPRMG-VSSSSLTCETCHGNLASCHGHFGHIKLALPVFHVGYFKATIQILQAICKNC 110
Query: 218 HKINIPATSQLLFINQIK 235
+ + + ++++++
Sbjct: 111 SSVLLSDEDKKKYLHELR 128
>gi|294610777|gb|ADF27180.1| RNA polymerase II largest subunit [Coniosporium uncinatum]
Length = 199
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 78/128 (60%), Gaps = 7/128 (5%)
Query: 483 LQYNVDLLMDAKLNINKTTGAHQIDG-----LKQMLDGKTGMIRQNMMGKRVNFAGRSVI 537
LQY+V MD NI A Q G ++ L GK G +R N+MGKRV+F+ R+VI
Sbjct: 59 LQYHVATXMDN--NIAGQPQALQKSGRPLKTIRSRLKGKEGRLRGNLMGKRVDFSARTVI 116
Query: 538 TPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
T DP L++D +GVP A+TLTYP VTP+N L+ +V NGPN +PGA + EDG+ +
Sbjct: 117 TGDPNLSLDEVGVPRSIARTLTYPETVTPYNXAKLQGLVRNGPNTHPGAKYVIREDGNRI 176
Query: 598 RISSSQAV 605
+ +A
Sbjct: 177 DLRHHKAA 184
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 49/75 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N L+ +V NGPN +PGA +
Sbjct: 110 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNXAKLQGLVRNGPNTHPGAKYVI 169
Query: 74 NEDGSVVRISSSQAV 88
EDG+ + + +A
Sbjct: 170 REDGNRIDLRHHKAA 184
>gi|226876185|gb|ACO89413.1| RNA polymerase II largest subunit, partial [Exophiala
lecanii-corni]
Length = 300
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 74/115 (64%), Gaps = 3/115 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY++ MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 186 LQYHIATYMDNEIAGLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 245
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDG 594
DP L++D +GVP A+TLTYP VTP+N+ L+++V NGP +PGA + + G
Sbjct: 246 DPNLSLDEVGVPRSIARTLTYPETVTPFNIEKLKRLVANGPTEHPGARYVIRDTG 300
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 44/64 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N+ L+++V NGP +PGA +
Sbjct: 237 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPFNIEKLKRLVANGPTEHPGARYVI 296
Query: 74 NEDG 77
+ G
Sbjct: 297 RDTG 300
>gi|307595331|ref|YP_003901648.1| DNA-directed RNA polymerase subunit A' [Vulcanisaeta distributa DSM
14429]
gi|307550532|gb|ADN50597.1| DNA-directed RNA polymerase subunit A' [Vulcanisaeta distributa DSM
14429]
Length = 891
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 83/138 (60%), Gaps = 5/138 (3%)
Query: 480 WHELQYNVDLLMDAKL-NIN--KTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSV 536
W LQY+V + +L N+ K + L Q L GK G R ++ GKRV+F+ R+V
Sbjct: 281 WDLLQYHVATYFNNELPNLPPVKHRSGRPLKTLAQRLKGKEGRFRGSLSGKRVDFSSRTV 340
Query: 537 ITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSV 596
I+PDP L+I+ +GVP++ AK LT P+ VT WN+ + R++V+NGP V+PGAN + DG
Sbjct: 341 ISPDPNLSINEVGVPIDVAKILTVPMTVTEWNIEMARQLVLNGPEVWPGANYVVYPDGR- 399
Query: 597 VRISSSQAVQRESLAKRL 614
R+ R LA +L
Sbjct: 400 -RVDLRYFRDRRELANKL 416
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 55/84 (65%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L+I+ +GVP++ AK LT P+ VT WN+ + R++V+NGP V+PGAN +
Sbjct: 335 FSSRTVISPDPNLSINEVGVPIDVAKILTVPMTVTEWNIEMARQLVLNGPEVWPGANYVV 394
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
DG R+ R LA +L
Sbjct: 395 YPDGR--RVDLRYFRDRRELANKL 416
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 63/118 (53%), Gaps = 5/118 (4%)
Query: 107 AIMKEKIITRQEVVP----EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDL 162
A EK R+E +P + +K + ++ +SV+++ + T++ G + GGL D
Sbjct: 2 ATQAEKTSVREEEIPLKTIKAIKFSILSPDVIRSMSVMEITTSETYDEAGRPMVGGLMDR 61
Query: 163 AMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKI 220
+G + E G C TCGN KC GH G IEL PVI+ + + + LL+ +C C +I
Sbjct: 62 RLG-VVEPGARCETCGNPPDKCPGHFGRIELARPVIHVEYAKYIHDLLRTTCRECGRI 118
>gi|329132889|gb|AEB78335.1| Rpb1, partial [Jakoba libera]
Length = 1040
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 107/195 (54%), Gaps = 20/195 (10%)
Query: 401 DIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLL 460
D + + L VPP +RP S++ + S + + G + S ++ +E+
Sbjct: 157 DWLLVTVLPVPPPAVRP-SID----MGGSGRAAQDDLTFKLGDILSTNQLLRRQEE---- 207
Query: 461 SEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMI 520
G+ TL +N+ LQ+++ +D +L + + Q L GK+G I
Sbjct: 208 ----HGVNPQTL----RNTEEMLQFHLFTFVDNEL---AGKSGKVLKSISQRLKGKSGRI 256
Query: 521 RQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGP 580
R N+MGKRV+F+ RSVIT DP L ID +GVP++ AK +T P VTP+N+ L+++V +GP
Sbjct: 257 RNNLMGKRVDFSARSVITADPILEIDQVGVPVDIAKIMTVPEVVTPFNIKRLQELVNHGP 316
Query: 581 NVYPGANMIQNEDGS 595
+V+PGA + EDG+
Sbjct: 317 SVHPGARFVFMEDGT 331
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 47/65 (72%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVIT DP L ID +GVP++ AK +T P VTP+N+ L+++V +GP+V+PGA +
Sbjct: 267 FSARSVITADPILEIDQVGVPVDIAKIMTVPEVVTPFNIKRLQELVNHGPSVHPGARFVF 326
Query: 74 NEDGS 78
EDG+
Sbjct: 327 MEDGT 331
>gi|291170444|gb|ADD82431.1| RNA polymerase II largest subunit [Coniosporium uncinatum]
Length = 298
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 78/128 (60%), Gaps = 7/128 (5%)
Query: 483 LQYNVDLLMDAKLNINKTTGAHQIDG-----LKQMLDGKTGMIRQNMMGKRVNFAGRSVI 537
LQY+V MD NI A Q G ++ L GK G +R N+MGKRV+F+ R+VI
Sbjct: 156 LQYHVATYMDN--NIAGQPQALQKSGRPLKTIRSRLKGKEGRLRGNLMGKRVDFSARTVI 213
Query: 538 TPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
T DP L++D +GVP A+TLTYP VTP+N L+ +V NGPN +PGA + EDG+ +
Sbjct: 214 TGDPNLSLDEVGVPRSIARTLTYPETVTPYNXAKLQGLVRNGPNTHPGAKYVIREDGNRI 273
Query: 598 RISSSQAV 605
+ +A
Sbjct: 274 DLRHHKAA 281
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 49/75 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N L+ +V NGPN +PGA +
Sbjct: 207 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNXAKLQGLVRNGPNTHPGAKYVI 266
Query: 74 NEDGSVVRISSSQAV 88
EDG+ + + +A
Sbjct: 267 REDGNRIDLRHHKAA 281
>gi|111278791|gb|ABH09093.1| RNA polymerase II largest subunit [Staurothele frustulenta]
Length = 1010
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 225 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 284
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L++D +GVP A+TLTYP VT +N L+++V+NGP +PGA I E G +
Sbjct: 285 DPNLSLDEVGVPRSIARTLTYPETVTRFNAEKLKQLVVNGPERHPGARYIIREQGERI 342
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 44/67 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N L+++V+NGP +PGA I
Sbjct: 276 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNAEKLKQLVVNGPERHPGARYII 335
Query: 74 NEDGSVV 80
E G +
Sbjct: 336 REQGERI 342
>gi|157741498|gb|ABV69454.1| RNA polymerase II largest subunit, partial [Endocarpon psorodeum]
Length = 999
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I L+ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 222 LQYHVATYMDNDIANLDKAQHKSGRPIKSLRARLKGKEGRLRQNLMGKRVDFSARTVITG 281
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TLTYP VT +N++ L+++V NGP +PGA I E+
Sbjct: 282 DPNLSLDEVGVPRSIARTLTYPETVTRFNISKLKQLVTNGPEAHPGARYIIREN 335
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N++ L+++V NGP +PGA I
Sbjct: 273 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISKLKQLVTNGPEAHPGARYII 332
Query: 74 NED 76
E+
Sbjct: 333 REN 335
>gi|206601369|gb|ACI16403.1| RNA polymerase II largest subunit [Polyblastia moravica]
gi|206601381|gb|ACI16409.1| RNA polymerase II largest subunit [Polyblastia moravica]
Length = 356
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 211 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 270
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TLTYP VTP+NV+ L+ ++I GP +PGA I E+
Sbjct: 271 DPNLSLDEVGVPRSIARTLTYPETVTPFNVSKLKNLIIRGPENHPGARYIIREN 324
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 44/63 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+NV+ L+ ++I GP +PGA I
Sbjct: 262 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPFNVSKLKNLIIRGPENHPGARYII 321
Query: 74 NED 76
E+
Sbjct: 322 REN 324
>gi|157741596|gb|ABV69503.1| RNA polymerase II largest subunit, partial [Wahlenbergiella mucosa]
Length = 999
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 83/136 (61%), Gaps = 6/136 (4%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 222 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 281
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV-- 597
DP L++D +GVP A+ LTYP VT +N+ L ++V NGPNV+PGA + + G +
Sbjct: 282 DPNLSLDEVGVPRTIARNLTYPETVTKFNIGRLSQLVANGPNVHPGAKYVIRKQGDRIDL 341
Query: 598 -RISSSQAVQRESLAK 612
+ SS+ V+ ++ K
Sbjct: 342 RHVKSSRGVELQTGMK 357
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 53/85 (62%), Gaps = 3/85 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+ LTYP VT +N+ L ++V NGPNV+PGA +
Sbjct: 273 FSARTVITGDPNLSLDEVGVPRTIARNLTYPETVTKFNIGRLSQLVANGPNVHPGAKYVI 332
Query: 74 NEDGSVV---RISSSQAVQRESLAK 95
+ G + + SS+ V+ ++ K
Sbjct: 333 RKQGDRIDLRHVKSSRGVELQTGMK 357
>gi|157741488|gb|ABV69449.1| RNA polymerase II largest subunit, partial [Clavascidium sp. AFTOL
2276]
Length = 374
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 73/113 (64%), Gaps = 3/113 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 222 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 281
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
DP L++D +GVP A+TLTYP VT +N++ L++ V NGP ++PGA I E
Sbjct: 282 DPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKQFVTNGPEIHPGARYIIRE 334
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 43/62 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N++ L++ V NGP ++PGA I
Sbjct: 273 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKQFVTNGPEIHPGARYII 332
Query: 74 NE 75
E
Sbjct: 333 RE 334
>gi|226876191|gb|ACO89416.1| RNA polymerase II largest subunit, partial [Exophiala xenobiotica]
Length = 857
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 75/118 (63%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY++ MD A L + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 186 LQYHIATYMDNEIAGLEKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 245
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L++D +GVP A+TLTYP VTP+N+ L+++V NGPN +PGA + + G +
Sbjct: 246 DPNLSLDEVGVPRSIARTLTYPETVTPFNLDKLKRLVANGPNEHPGARYVIRDTGERI 303
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 46/67 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N+ L+++V NGPN +PGA +
Sbjct: 237 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPFNLDKLKRLVANGPNEHPGARYVI 296
Query: 74 NEDGSVV 80
+ G +
Sbjct: 297 RDTGERI 303
>gi|206601393|gb|ACI16415.1| RNA polymerase II largest subunit [Polyblastia lutosa]
Length = 356
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 211 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 270
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TLTYP VTP+NV+ L+ ++I GP +PGA I E+
Sbjct: 271 DPNLSLDEVGVPRSIARTLTYPETVTPFNVSKLKNLIIRGPENHPGARYIIREN 324
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 44/63 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+NV+ L+ ++I GP +PGA I
Sbjct: 262 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPFNVSKLKNLIIRGPENHPGARYII 321
Query: 74 NED 76
E+
Sbjct: 322 REN 324
>gi|157741548|gb|ABV69479.1| RNA polymerase II largest subunit, partial [Staurothele immersa]
Length = 999
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 222 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLRGKEGRLRQNLMGKRVDFSARTVITG 281
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TLTYP VTP+N++ L+ ++I GP +PGA I E+
Sbjct: 282 DPNLSLDEVGVPRSIARTLTYPETVTPFNISKLKNLIIRGPESHPGARYIIREN 335
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N++ L+ ++I GP +PGA I
Sbjct: 273 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPFNISKLKNLIIRGPESHPGARYII 332
Query: 74 NED 76
E+
Sbjct: 333 REN 335
>gi|157741580|gb|ABV69495.1| RNA polymerase II largest subunit, partial [Verrucaria
hochstetteri]
Length = 999
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 222 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 281
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TLTYP VTP+N++ L+ ++I GP +PGA I E+
Sbjct: 282 DPNLSLDEVGVPRSIARTLTYPESVTPFNISKLKNLIIRGPENHPGARYIIREN 335
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N++ L+ ++I GP +PGA I
Sbjct: 273 FSARTVITGDPNLSLDEVGVPRSIARTLTYPESVTPFNISKLKNLIIRGPENHPGARYII 332
Query: 74 NED 76
E+
Sbjct: 333 REN 335
>gi|312273881|gb|ADQ57310.1| RNA polymerase II largest subunit, partial [Nosema fumiferanae]
Length = 939
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 115/228 (50%), Gaps = 34/228 (14%)
Query: 390 VLDTTKELIATDIMFIRS-------LVVPPNNLRP-LSMEQMPPVEHSRNKLYQSILYSC 441
+LD E++ D+ + R L+VPP ++RP + ME M E I+ S
Sbjct: 95 ILDEDIEVLGFDLAYSRPEWLILTVLLVPPPSVRPSIVMEGMLRAEDDLTHKLSDIIKSN 154
Query: 442 GSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTT 501
LK M +G G + + Q LQ++V L+D +I+
Sbjct: 155 TYLKKYEM---------------EGAPGHIIRDYEQ----LLQFHVATLIDN--DISGQP 193
Query: 502 GAHQIDG-----LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAK 556
A Q G + L GK G +R N+MGKRV+F+ RSVIT D ++++ +GVPLE AK
Sbjct: 194 QALQKSGRPLKSISARLKGKEGRVRGNLMGKRVDFSARSVITADANISLEEVGVPLEVAK 253
Query: 557 TLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQA 604
T+P +TP+N+ L K+V NGPN YPGAN + DG + ++ ++
Sbjct: 254 IHTFPEKITPFNIEKLEKLVANGPNEYPGANYVIRTDGQRIDLNFNRG 301
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 49/74 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVIT D ++++ +GVPLE AK T+P +TP+N+ L K+V NGPN YPGAN +
Sbjct: 228 FSARSVITADANISLEEVGVPLEVAKIHTFPEKITPFNIEKLEKLVANGPNEYPGANYVI 287
Query: 74 NEDGSVVRISSSQA 87
DG + ++ ++
Sbjct: 288 RTDGQRIDLNFNRG 301
>gi|83320472|gb|ABC02863.1| RNA polymerase II largest subunit, partial [Monoblepharella sp.
M15]
Length = 547
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 80/127 (62%), Gaps = 3/127 (2%)
Query: 476 LQNSWHELQYNVDLLMDAKLN---INKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFA 532
++ W +QY+V +MD +++ + + G I G++Q L GK G +R N+MGKRV+F+
Sbjct: 18 IEELWDLVQYHVATMMDNQISGMPVAQQKGGRPIKGIRQRLKGKEGRLRGNLMGKRVDFS 77
Query: 533 GRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
R+VIT DP ++ID +GVP A+ LT+P V +N L+++V NG N YPGAN +
Sbjct: 78 ARTVITGDPNISIDEVGVPRSIARNLTFPEIVNDYNRERLQRLVANGYNEYPGANRVIRA 137
Query: 593 DGSVVRI 599
G V+ +
Sbjct: 138 GGDVINL 144
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 43/69 (62%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP ++ID +GVP A+ LT+P V +N L+++V NG N YPGAN +
Sbjct: 76 FSARTVITGDPNISIDEVGVPRSIARNLTFPEIVNDYNRERLQRLVANGYNEYPGANRVI 135
Query: 74 NEDGSVVRI 82
G V+ +
Sbjct: 136 RAGGDVINL 144
>gi|157741582|gb|ABV69496.1| RNA polymerase II largest subunit, partial [Verrucaria
hochstetteri]
Length = 999
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 222 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 281
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TLTYP VTP+N++ L+ ++I GP +PGA I E+
Sbjct: 282 DPNLSLDEVGVPRSIARTLTYPESVTPFNISKLKNLIIRGPENHPGARYIIREN 335
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N++ L+ ++I GP +PGA I
Sbjct: 273 FSARTVITGDPNLSLDEVGVPRSIARTLTYPESVTPFNISKLKNLIIRGPENHPGARYII 332
Query: 74 NED 76
E+
Sbjct: 333 REN 335
>gi|157741538|gb|ABV69474.1| RNA polymerase II largest subunit, partial [Staurothele areolata]
Length = 999
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 222 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 281
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L++D +GVP A+TLTYP VT +N L+++V+NGP +PGA I E G +
Sbjct: 282 DPNLSLDEVGVPRSIARTLTYPETVTRFNAEKLKQLVVNGPERHPGARYIIREQGERI 339
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 44/67 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N L+++V+NGP +PGA I
Sbjct: 273 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNAEKLKQLVVNGPERHPGARYII 332
Query: 74 NEDGSVV 80
E G +
Sbjct: 333 REQGERI 339
>gi|120561176|gb|ABM26983.1| RNA polymerase II largest subunit [Vairimorpha necatrix]
Length = 1255
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 79/252 (31%), Positives = 125/252 (49%), Gaps = 33/252 (13%)
Query: 365 MASEVEADFKKLWTNE--HLFLKCLIP----VLDTTKELIATDIMFIRSLVVPPNNLRP- 417
M E E+D K + E H LK ++ L ++ + + + L+VPP ++RP
Sbjct: 161 MKGEEESDGKVILNGERVHNILKKIVNXDAVFLGFDQKFTKPEWLILTVLLVPPPSVRPS 220
Query: 418 LSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQ 477
+ ME M E I+ + LK L+G G + + Q
Sbjct: 221 IVMEGMLRAEDDLTHKLADIVKANTYLKKY---------------ELEGAPGHVVRDYEQ 265
Query: 478 NSWHELQYNVDLLMDAKLNINKTTGAHQIDG-----LKQMLDGKTGMIRQNMMGKRVNFA 532
LQ+++ ++D +I+ A Q G + L GK G +R N+MGKRV+F+
Sbjct: 266 ----LLQFHIATMIDN--DISGQPQALQKSGRPLKSISARLKGKEGRVRGNLMGKRVDFS 319
Query: 533 GRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
RSVITPDP ++++ +GVP E AK T+P +TP+N+ L K+V NGPN YPGAN +
Sbjct: 320 ARSVITPDPNISVEEVGVPSEIAKIHTFPEIITPFNIDRLTKLVSNGPNEYPGANYVIRN 379
Query: 593 DGSVVRISSSQA 604
DG + ++ ++
Sbjct: 380 DGQRIDLNFNRG 391
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 50/74 (67%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVITPDP ++++ +GVP E AK T+P +TP+N+ L K+V NGPN YPGAN +
Sbjct: 318 FSARSVITPDPNISVEEVGVPSEIAKIHTFPEIITPFNIDRLTKLVSNGPNEYPGANYVI 377
Query: 74 NEDGSVVRISSSQA 87
DG + ++ ++
Sbjct: 378 RNDGQRIDLNFNRG 391
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
++ ++ +E+++ SVV++ P T + G GGL DL MG +ER C++C +
Sbjct: 13 IQFGLFSPEEIRKSSVVQIIHPETMEN-GFPKSGGLIDLKMGT-TERAFLCSSCEKDNFS 70
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINI 222
C GH GHIEL P+ + + ++ +L+ CF C ++ I
Sbjct: 71 CPGHFGHIELTKPMFHVGYMTKIKKILECVCFYCSRLKI 109
>gi|111278801|gb|ABH09098.1| RNA polymerase II largest subunit [Pyrenula pseudobufonia]
Length = 1007
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 74/119 (62%), Gaps = 2/119 (1%)
Query: 480 WHELQY-NVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
WH Y N D+ L TG I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 228 WHVATYMNNDIAGMDGLKAQHKTG-RPIKSIRARLKGKDGRLRQNLMGKRVDFSARTVIT 286
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L++D +GVP A+ LTYP VTP+NV L+++V NGP +PGA + +DG+ +
Sbjct: 287 GDPNLSLDEVGVPRSIARNLTYPEVVTPFNVDKLKRLVANGPTEHPGARFVVRDDGTRI 345
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 46/67 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+ LTYP VTP+NV L+++V NGP +PGA +
Sbjct: 279 FSARTVITGDPNLSLDEVGVPRSIARNLTYPEVVTPFNVDKLKRLVANGPTEHPGARFVV 338
Query: 74 NEDGSVV 80
+DG+ +
Sbjct: 339 RDDGTRI 345
>gi|38091168|emb|CAE46438.1| RNA polymerase II largest subunit [Gromia oviformis]
Length = 418
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 121/443 (27%), Positives = 183/443 (41%), Gaps = 90/443 (20%)
Query: 183 KCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYV 242
+C GH GHI+L +P+ + F +L+ C+ C I L D
Sbjct: 1 ECPGHFGHIDLALPMFHPGFMTVTLKILRCVCYFCANI---------------LADP--- 42
Query: 243 TQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDIN--DYKGGEELR-SAF 299
Q ++ + N E+ RL L +L S K C D K G+ L SA
Sbjct: 43 -QNSKFQDIIKNVEHPRLRLNALEKLCQS---------AKSCGATQRDDKAGDSLETSAD 92
Query: 300 VAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKR 359
V Q C + + + KI F+ + D N RK
Sbjct: 93 VGQGSG---------CGSKVPKYRKENIKIFAEFEENSD------------IGNATDRKT 131
Query: 360 EQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRP-L 418
E + A +V FK++ ++ C L + I L V P +RP +
Sbjct: 132 E---LTAEKVFQIFKQISPDD-----CR--TLGLNPAHARPEWFLITVLPVGPPPIRPTI 181
Query: 419 SMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQN 478
+M+ Y I+ + SL+ +Q D RG + LQ+
Sbjct: 182 TMDSASRSLDDLTHKYTDIIKANESLR---------KQRD---------RG-VAQHALQD 222
Query: 479 SWHELQYNVDLLMDAKLNIN---KTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRS 535
LQY+V LMD +L + G I ++Q L GK G +R N+MGKRV+F+ R+
Sbjct: 223 YTELLQYHVATLMDNELPGQPPAQQRGGKPIKNIRQRLVGKAGRVRGNLMGKRVDFSART 282
Query: 536 VITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGS 595
VI DP L+I+ +GVP A LT P VT N++ ++++V NGP+ +PGA I ED
Sbjct: 283 VIGGDPNLSIEQVGVPQSIAMNLTVPERVTTLNLSKMQELVKNGPSKHPGAKTIIREDKR 342
Query: 596 V-----VRISSSQAVQRESLAKR 613
V V+ S + VQ + + +R
Sbjct: 343 VKDLRFVKRPSDEHVQPDFIVER 365
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI DP L+I+ +GVP A LT P VT N++ ++++V NGP+ +PGA I
Sbjct: 278 FSARTVIGGDPNLSIEQVGVPQSIAMNLTVPERVTTLNLSKMQELVKNGPSKHPGAKTII 337
Query: 74 NEDGSV-----VRISSSQAVQRESLAKRLITPED 102
ED V V+ S + VQ + + +R + D
Sbjct: 338 REDKRVKDLRFVKRPSDEHVQPDFIVERHLIDGD 371
>gi|226876255|gb|ACO89448.1| RNA polymerase II largest subunit, partial [Chromocleista
malachitea]
Length = 934
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 80/131 (61%), Gaps = 3/131 (2%)
Query: 483 LQYNVDLLMDAKLNINKTT---GAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY++ MD + G + L+ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 210 LQYHIATYMDNDIAGQPKAMQKGNRPVKALRSRLKGKEGRLRQNLMGKRVDFSARTVITG 269
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
DP L+++ +GVP AK LTYP VTP+N+ L+++V NGPN++PGA I ++G + +
Sbjct: 270 DPNLSLEEVGVPYSTAKILTYPEVVTPYNIEKLQRLVSNGPNIHPGARYIVRDNGERIDL 329
Query: 600 SSSQAVQRESL 610
++ + L
Sbjct: 330 RHAKRAGAQQL 340
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 52/80 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L+++ +GVP AK LTYP VTP+N+ L+++V NGPN++PGA I
Sbjct: 261 FSARTVITGDPNLSLEEVGVPYSTAKILTYPEVVTPYNIEKLQRLVSNGPNIHPGARYIV 320
Query: 74 NEDGSVVRISSSQAVQRESL 93
++G + + ++ + L
Sbjct: 321 RDNGERIDLRHAKRAGAQQL 340
>gi|110669622|gb|ABG81906.1| RNA polymerase II largest subunit [Dermatocarpon miniatum]
Length = 1011
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 74/113 (65%), Gaps = 3/113 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 218 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 277
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
DP L++D +GVP A+TLTYP VT +N++ L+++V NGP ++PGA I E
Sbjct: 278 DPNLSLDEVGVPRSIARTLTYPETVTRFNISKLKQLVTNGPEMHPGARYIIRE 330
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 44/62 (70%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N++ L+++V NGP ++PGA I
Sbjct: 269 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISKLKQLVTNGPEMHPGARYII 328
Query: 74 NE 75
E
Sbjct: 329 RE 330
>gi|226876207|gb|ACO89424.1| RNA polymerase II largest subunit, partial [Chaetothyriales sp.
TRN30]
Length = 352
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY++ MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 207 LQYHIATYMDNEIAGLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 266
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L++D +GVP A+TLTYP VTP+N+ L++ V NGP +PGA + + G +
Sbjct: 267 DPNLSLDEVGVPRSIARTLTYPETVTPFNIEKLKRFVANGPTEHPGARYVIRDTGERI 324
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 44/67 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N+ L++ V NGP +PGA +
Sbjct: 258 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPFNIEKLKRFVANGPTEHPGARYVI 317
Query: 74 NEDGSVV 80
+ G +
Sbjct: 318 RDTGERI 324
>gi|157741630|gb|ABV69520.1| RNA polymerase II largest subunit, partial [Verrucula inconnexaria]
Length = 999
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 73/118 (61%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 222 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITS 281
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L++D +GVP A+TLTYP VT +N++ L+ V NGP +PGA + E G +
Sbjct: 282 DPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKAFVTNGPEAHPGARYVIRETGERI 339
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 43/67 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N++ L+ V NGP +PGA +
Sbjct: 273 FSARTVITSDPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKAFVTNGPEAHPGARYVI 332
Query: 74 NEDGSVV 80
E G +
Sbjct: 333 RETGERI 339
>gi|206601367|gb|ACI16402.1| RNA polymerase II largest subunit [Verrucaria viridula]
Length = 356
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 211 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 270
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TLTYP VT +N++ L+++V NGP +PGA I E+
Sbjct: 271 DPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKQLVTNGPEAHPGARYIIREN 324
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N++ L+++V NGP +PGA I
Sbjct: 262 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKQLVTNGPEAHPGARYII 321
Query: 74 NED 76
E+
Sbjct: 322 REN 324
>gi|312273883|gb|ADQ57311.1| RNA polymerase II largest subunit, partial [Nosema sp. CO 05-11]
Length = 974
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 76/218 (34%), Positives = 110/218 (50%), Gaps = 34/218 (15%)
Query: 390 VLDTTKELIATDIMFIRS-------LVVPPNNLRP-LSMEQMPPVEHSRNKLYQSILYSC 441
+LD E++ D+ + R L+VPP ++RP + ME M E I+ S
Sbjct: 95 ILDEDIEVLGFDLAYSRPEWLILTILLVPPPSVRPSIVMEGMLRAEDDLTHKLSDIIKSN 154
Query: 442 GSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTT 501
LK M +G G + + Q LQ++V L+D +I+
Sbjct: 155 TYLKKYEM---------------EGAPGHIIRDYEQ----LLQFHVATLIDN--DISGQP 193
Query: 502 GAHQIDG-----LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAK 556
A Q G + L GK G +R N+MGKRV+F+ RSVIT D ++++ +GVPLE AK
Sbjct: 194 QALQKSGRPLKSISARLKGKEGRVRGNLMGKRVDFSARSVITADANISLEEVGVPLEVAK 253
Query: 557 TLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDG 594
T+P +TP+N+ L K+V NGPN YPGAN + DG
Sbjct: 254 IHTFPEKITPFNIEKLEKLVANGPNEYPGANYVIRTDG 291
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 44/64 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVIT D ++++ +GVPLE AK T+P +TP+N+ L K+V NGPN YPGAN +
Sbjct: 228 FSARSVITADANISLEEVGVPLEVAKIHTFPEKITPFNIEKLEKLVANGPNEYPGANYVI 287
Query: 74 NEDG 77
DG
Sbjct: 288 RTDG 291
>gi|157741502|gb|ABV69456.1| RNA polymerase II largest subunit, partial [Heteroplacidium
contumescens]
Length = 374
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 74/113 (65%), Gaps = 3/113 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 222 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 281
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
DP L++D +GVP A+TLTYP VT +N++ L+++V NGP ++PGA I E
Sbjct: 282 DPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKQLVTNGPEMHPGARYIIRE 334
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 44/62 (70%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N++ L+++V NGP ++PGA I
Sbjct: 273 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKQLVTNGPEMHPGARYII 332
Query: 74 NE 75
E
Sbjct: 333 RE 334
>gi|397135850|gb|AFO11420.1| RNA polymerase I, partial [Saccharomycodes ludwigii]
Length = 871
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 79/129 (61%), Gaps = 13/129 (10%)
Query: 483 LQYNVDLLMDAKLNINKTTGAHQ--------IDGLKQMLDGKTGMIRQNMMGKRVNFAGR 534
LQY+V MD N G Q + ++ L GK G IR N+MGKRV+F+GR
Sbjct: 109 LQYHVATYMD-----NDIAGQPQALQKSGRPVKSIRARLKGKEGRIRNNLMGKRVDFSGR 163
Query: 535 SVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDG 594
+VI+ DP L +D +GVPL A+TLTYP VTP+N+ L ++V NGPN +PGA + ++G
Sbjct: 164 TVISGDPNLELDQVGVPLSIARTLTYPEIVTPYNIDRLTQLVRNGPNEHPGAKYVIRDNG 223
Query: 595 SVVRISSSQ 603
+ + + S+
Sbjct: 224 TRIDLRYSK 232
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 50/73 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+ DP L +D +GVPL A+TLTYP VTP+N+ L ++V NGPN +PGA +
Sbjct: 160 FSGRTVISGDPNLELDQVGVPLSIARTLTYPEIVTPYNIDRLTQLVRNGPNEHPGAKYVI 219
Query: 74 NEDGSVVRISSSQ 86
++G+ + + S+
Sbjct: 220 RDNGTRIDLRYSK 232
>gi|157741486|gb|ABV69448.1| RNA polymerase II largest subunit, partial [Clavascidium umbrinum]
Length = 999
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 73/113 (64%), Gaps = 3/113 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 222 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 281
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
DP L++D +GVP A+TLTYP VT +N++ L++ V NGP ++PGA I E
Sbjct: 282 DPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKQFVTNGPEIHPGARYIIRE 334
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 43/62 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N++ L++ V NGP ++PGA I
Sbjct: 273 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKQFVTNGPEIHPGARYII 332
Query: 74 NE 75
E
Sbjct: 333 RE 334
>gi|4001824|gb|AAD12604.1| largest subunit of RNA polymerase II [Vairimorpha necatrix]
Length = 1605
Score = 106 bits (264), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 79/252 (31%), Positives = 125/252 (49%), Gaps = 33/252 (13%)
Query: 365 MASEVEADFKKLWTNE--HLFLKCLIP----VLDTTKELIATDIMFIRSLVVPPNNLRP- 417
M E E+D K + E H LK ++ L ++ + + + L+VPP ++RP
Sbjct: 161 MKGEEESDGKVILNGERVHNILKKIVNEDAVFLGFDQKFTKPEWLILTVLLVPPPSVRPS 220
Query: 418 LSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQ 477
+ ME M E I+ + LK L+G G + + Q
Sbjct: 221 IVMEGMLRAEDDLTHKLADIVKANTYLKKY---------------ELEGAPGHVVRDYEQ 265
Query: 478 NSWHELQYNVDLLMDAKLNINKTTGAHQIDG-----LKQMLDGKTGMIRQNMMGKRVNFA 532
LQ+++ ++D +I+ A Q G + L GK G +R N+MGKRV+F+
Sbjct: 266 ----LLQFHIATMIDN--DISGQPQALQKSGRPLKSISARLKGKEGRVRGNLMGKRVDFS 319
Query: 533 GRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
RSVITPDP ++++ +GVP E AK T+P +TP+N+ L K+V NGPN YPGAN +
Sbjct: 320 ARSVITPDPNISVEEVGVPSEIAKIHTFPEIITPFNIDRLTKLVSNGPNEYPGANYVIRN 379
Query: 593 DGSVVRISSSQA 604
DG + ++ ++
Sbjct: 380 DGQRIDLNFNRG 391
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 50/74 (67%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVITPDP ++++ +GVP E AK T+P +TP+N+ L K+V NGPN YPGAN +
Sbjct: 318 FSARSVITPDPNISVEEVGVPSEIAKIHTFPEIITPFNIDRLTKLVSNGPNEYPGANYVI 377
Query: 74 NEDGSVVRISSSQA 87
DG + ++ ++
Sbjct: 378 RNDGQRIDLNFNRG 391
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
++ ++ +E+++ SVV++ P T + G GGL DL MG +ER C++C +
Sbjct: 13 IQFGLFSPEEIRKSSVVQIIHPETMEN-GFPKSGGLIDLKMGT-TERAFLCSSCEKDNFS 70
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINI 222
C GH GHIEL P+ + + ++ +L+ CF C ++ I
Sbjct: 71 CPGHFGHIELTKPMFHVGYMTKIKKILECVCFYCSRLKI 109
>gi|157741556|gb|ABV69483.1| RNA polymerase II largest subunit, partial [Thelidium papulare]
Length = 999
Score = 106 bits (264), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 222 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 281
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TLTYP VTP+N++ L+ ++I GP +PGA I E+
Sbjct: 282 DPNLSLDEVGVPRSIARTLTYPETVTPFNISKLKNLIIRGPEHHPGARYIIREN 335
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N++ L+ ++I GP +PGA I
Sbjct: 273 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPFNISKLKNLIIRGPEHHPGARYII 332
Query: 74 NED 76
E+
Sbjct: 333 REN 335
>gi|157741558|gb|ABV69484.1| RNA polymerase II largest subunit, partial [Thelidium pyrenophorum]
Length = 999
Score = 106 bits (264), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 222 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 281
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TLTYP VTP+N++ L+ ++I GP +PGA I E+
Sbjct: 282 DPNLSLDEVGVPRSIARTLTYPETVTPFNISKLKNLIIRGPEHHPGARYIIREN 335
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N++ L+ ++I GP +PGA I
Sbjct: 273 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPFNISKLKNLIIRGPEHHPGARYII 332
Query: 74 NED 76
E+
Sbjct: 333 REN 335
>gi|157741618|gb|ABV69514.1| RNA polymerase II largest subunit, partial [Verrucula biatorinaria]
Length = 999
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 73/118 (61%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 222 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 281
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L++D +GVP A+TLTYP VT +N++ L+ V NGP +PGA + E G +
Sbjct: 282 DPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKAFVTNGPEAHPGARYVIRETGERI 339
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 43/67 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N++ L+ V NGP +PGA +
Sbjct: 273 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKAFVTNGPEAHPGARYVI 332
Query: 74 NEDGSVV 80
E G +
Sbjct: 333 RETGERI 339
>gi|111154416|gb|ABH07422.1| RNA polymerase II largest subunit [Dibaeis baeomyces]
Length = 366
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 76/126 (60%), Gaps = 3/126 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V LMD A L I ++ L GK G +R N+MGKRV+F+ R+VIT
Sbjct: 212 LQYHVATLMDNDIAGLPQAMQKSGRPIKSIRSRLKGKEGRLRGNLMGKRVDFSARTVITG 271
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
DP L++D +GVP AKTLTYP VTP+N+ L ++V NGPN +PGA + + G + +
Sbjct: 272 DPNLSLDEVGVPRSIAKTLTYPETVTPYNIHKLHQLVRNGPNEHPGAKYVIRDTGDRIDL 331
Query: 600 SSSQAV 605
+ V
Sbjct: 332 RHHKRV 337
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 48/75 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP AKTLTYP VTP+N+ L ++V NGPN +PGA +
Sbjct: 263 FSARTVITGDPNLSLDEVGVPRSIAKTLTYPETVTPYNIHKLHQLVRNGPNEHPGAKYVI 322
Query: 74 NEDGSVVRISSSQAV 88
+ G + + + V
Sbjct: 323 RDTGDRIDLRHHKRV 337
>gi|328790760|ref|XP_003251457.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like,
partial [Apis mellifera]
Length = 1374
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/117 (47%), Positives = 76/117 (64%), Gaps = 10/117 (8%)
Query: 480 WHELQYNVDLLMDAK-----LNIN-KTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
W LQ + L ++++ LN+ K +G GL Q L GK G R N+ GKRV+F+
Sbjct: 310 WEFLQLHCALYINSEMSGIPLNMQPKKSGR----GLVQRLKGKQGRFRGNLSGKRVDFSS 365
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 590
R+VI+PDP L I+ +GVP+ AK LTYP V P N+ L+RK+V NGP+++PGAN IQ
Sbjct: 366 RTVISPDPNLRIEQVGVPIHVAKILTYPEKVNPSNIELMRKLVRNGPDIHPGANFIQ 422
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 45/60 (75%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L I+ +GVP+ AK LTYP V P N+ L+RK+V NGP+++PGAN IQ
Sbjct: 363 FSSRTVISPDPNLRIEQVGVPIHVAKILTYPEKVNPSNIELMRKLVRNGPDIHPGANFIQ 422
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 153 HT-IPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLK 211
HT +P G+ D MG + + C +CG +C GH G+I+L +PV + +FR + +L+
Sbjct: 48 HTPVPYGVLDRRMGTCNNTTN-CASCGKTLNECIGHFGYIDLELPVFHVGYFRSIIGILQ 106
Query: 212 LSCFLCHKINIPATSQLLFINQIKLLDAGYVTQ 244
C C + + + ++ ++ + GY+T+
Sbjct: 107 TICKNCSHVMLSEIDKKHYLTRVLNPNLGYLTR 139
>gi|226876162|gb|ACO89402.1| RNA polymerase II largest subunit, partial [Capronia sp. WUC 236]
Length = 372
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 75/118 (63%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY++ MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 220 LQYHIATYMDNEIAGLDRAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 279
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L++D +GVP A+TLTYP VTP+N+ L+++V NGP +PGA + + G +
Sbjct: 280 DPNLSLDEVGVPRSIARTLTYPETVTPFNLDKLKRLVANGPTEHPGARYVIRDTGERI 337
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 45/67 (67%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N+ L+++V NGP +PGA +
Sbjct: 271 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPFNLDKLKRLVANGPTEHPGARYVI 330
Query: 74 NEDGSVV 80
+ G +
Sbjct: 331 RDTGERI 337
>gi|157741624|gb|ABV69517.1| RNA polymerase II largest subunit, partial [Verrucula granulosaria]
Length = 987
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 73/118 (61%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 222 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 281
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L++D +GVP A+TLTYP VT +N++ L+ V NGP +PGA + E G +
Sbjct: 282 DPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKAFVTNGPEAHPGARYVIRETGERI 339
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 43/67 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N++ L+ V NGP +PGA +
Sbjct: 273 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKAFVTNGPEAHPGARYVI 332
Query: 74 NEDGSVV 80
E G +
Sbjct: 333 RETGERI 339
>gi|206601399|gb|ACI16418.1| RNA polymerase II largest subunit [Thelidium umbilicatum]
Length = 357
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 211 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 270
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TLTYP VTP+N++ L+ +++ GP +PGA I E+
Sbjct: 271 DPNLSLDEVGVPRSIARTLTYPETVTPFNISKLKNLIVRGPEHHPGARYIIREN 324
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 44/63 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N++ L+ +++ GP +PGA I
Sbjct: 262 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPFNISKLKNLIVRGPEHHPGARYII 321
Query: 74 NED 76
E+
Sbjct: 322 REN 324
>gi|408402779|ref|YP_006860762.1| DNA-directed RNA polymerase subunit A [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|300521498|gb|ADK25960.1| RNA polymerase A [Candidatus Nitrososphaera gargensis]
gi|408363375|gb|AFU57105.1| DNA-directed RNA polymerase subunit A [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 1273
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 81/140 (57%), Gaps = 15/140 (10%)
Query: 483 LQYNVDLLMDAKLNINKTTG---AHQIDG-----LKQMLDGKTGMIRQNMMGKRVNFAGR 534
LQY+V D N+ +G AH G L Q L GK G R ++ GKRV+F+ R
Sbjct: 271 LQYHVTTYFD-----NEVSGIPQAHHRSGRPLKTLTQRLKGKEGRFRGSLSGKRVDFSSR 325
Query: 535 SVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDG 594
+VI+PDP L I +GVP + AK LT P V+ WNV L+++V+NGPN YPGAN I DG
Sbjct: 326 TVISPDPNLTIADVGVPTDVAKKLTIPETVSQWNVERLKELVMNGPNTYPGANYIIRPDG 385
Query: 595 SVVRISSSQAVQRESLAKRL 614
V+I R+++A L
Sbjct: 386 --VKIRLDYVTDRKAIADSL 403
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 65/119 (54%), Gaps = 2/119 (1%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
+K ++ EV++ SV ++ +P T++ G + GGL D +G + E G C TCGN K
Sbjct: 11 IKFSVWSPTEVRKFSVAEITAPETYDEDGMPVQGGLMDNRLGTL-EPGQKCATCGNTSAK 69
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYV 242
C GH GHIEL PV++ F D+ LL +SC C++I + +L I+ A Y
Sbjct: 70 CPGHFGHIELAEPVLHIAFVDDIHKLLLISCRSCNRIKLEP-EELTHYKSIRDTKAAYA 127
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L I +GVP + AK LT P V+ WNV L+++V+NGPN YPGAN I
Sbjct: 322 FSSRTVISPDPNLTIADVGVPTDVAKKLTIPETVSQWNVERLKELVMNGPNTYPGANYII 381
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
DG V+I R+++A L
Sbjct: 382 RPDG--VKIRLDYVTDRKAIADSL 403
>gi|157741620|gb|ABV69515.1| RNA polymerase II largest subunit, partial [Verrucula arnoldaria]
Length = 999
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 73/118 (61%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 222 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 281
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L++D +GVP A+TLTYP VT +N++ L+ V NGP +PGA + E G +
Sbjct: 282 DPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKAFVTNGPEAHPGARYVIRETGERI 339
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 43/67 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N++ L+ V NGP +PGA +
Sbjct: 273 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKAFVTNGPEAHPGARYVI 332
Query: 74 NEDGSVV 80
E G +
Sbjct: 333 RETGERI 339
>gi|157741536|gb|ABV69473.1| RNA polymerase II largest subunit, partial [Polyblastia
viridescens]
Length = 999
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 222 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 281
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TLTYP VTP+N++ L+ ++I GP +PGA I E+
Sbjct: 282 DPNLSLDEVGVPRSIARTLTYPETVTPFNISKLKNLIIRGPENHPGARYIIREN 335
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N++ L+ ++I GP +PGA I
Sbjct: 273 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPFNISKLKNLIIRGPENHPGARYII 332
Query: 74 NED 76
E+
Sbjct: 333 REN 335
>gi|157741576|gb|ABV69493.1| RNA polymerase II largest subunit, partial [Verrucaria fuscula]
Length = 999
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 74/113 (65%), Gaps = 3/113 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 222 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 281
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
DP L++D +GVP A+TLTYP VT +N++ L+++V NGP ++PGA I E
Sbjct: 282 DPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKQLVTNGPEMHPGARYIIRE 334
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 44/62 (70%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N++ L+++V NGP ++PGA I
Sbjct: 273 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKQLVTNGPEMHPGARYII 332
Query: 74 NE 75
E
Sbjct: 333 RE 334
>gi|83320456|gb|ABC02855.1| RNA polymerase II largest subunit, partial [Boothiomyces
macroporosum]
Length = 999
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 110/425 (25%), Positives = 176/425 (41%), Gaps = 97/425 (22%)
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLE 249
HIE PV + + + ++ L+ C+ C KI
Sbjct: 1 HIEFAKPVYHAGYLKKIKKTLETVCWFCSKIKT--------------------------- 33
Query: 250 ETLFNEENLRLHPAQLVQLVDSHVQSI--LAHGTKICDINDYKGGEELRSAFVAQVLSRH 307
+E + R AQ + Q + L+ G IC + + G++ +
Sbjct: 34 ----DESDFRFKRAQTFKNNAKKFQEVWSLSKGKTICAVEENLEGDQGK----------- 78
Query: 308 VKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMAS 367
+K C QR+ +F++ L S S ++ +I R +
Sbjct: 79 IKHNHGGCG---------QRQ--PTFRLKGLTLSASFKASSDEDGEKI-EARTIDISASK 126
Query: 368 EVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRP-LSMEQMPPV 426
+E K ++E L P+ + +I T L VPP +RP +SM+ M
Sbjct: 127 ALEVLIK--ISDEECLKMGLSPIWARPEWMILT------VLPVPPMAVRPSISMDGMGRG 178
Query: 427 EHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYN 486
E I+ + +LK + + S +++E L N LQ WH Y
Sbjct: 179 EDDLTHKLSDIIKANTNLKKHEV---DGAPSHIIAE---------LENLLQ--WHVCTY- 223
Query: 487 VDLLMDAKLNINKTTGAHQ--------IDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
+N N+T G Q I ++ L GK G +R N+MGKRV+F+ R+VIT
Sbjct: 224 --------MN-NETAGIPQASQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVIT 274
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVR 598
DP L+ID +GVP A+ LT+P VTP+N+ +L +MV NGPNV+PGA + + G +
Sbjct: 275 GDPNLSIDQVGVPRSIARNLTFPETVTPYNLEMLSQMVRNGPNVHPGAKHVIRDTGERID 334
Query: 599 ISSSQ 603
+ S+
Sbjct: 335 LRYSK 339
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 49/73 (67%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L+ID +GVP A+ LT+P VTP+N+ +L +MV NGPNV+PGA +
Sbjct: 267 FSARTVITGDPNLSIDQVGVPRSIARNLTFPETVTPYNLEMLSQMVRNGPNVHPGAKHVI 326
Query: 74 NEDGSVVRISSSQ 86
+ G + + S+
Sbjct: 327 RDTGERIDLRYSK 339
>gi|157741628|gb|ABV69519.1| RNA polymerase II largest subunit, partial [Verrucula inconnexaria]
Length = 999
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 73/118 (61%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 222 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 281
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L++D +GVP A+TLTYP VT +N++ L+ V NGP +PGA + E G +
Sbjct: 282 DPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKAFVTNGPEAHPGARYVIRETGERI 339
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 43/67 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N++ L+ V NGP +PGA +
Sbjct: 273 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKAFVTNGPEAHPGARYVI 332
Query: 74 NEDGSVV 80
E G +
Sbjct: 333 RETGERI 339
>gi|361124608|gb|EHK96688.1| putative DNA-directed RNA polymerase II subunit rpb1 [Glarea
lozoyensis 74030]
Length = 1727
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/122 (45%), Positives = 77/122 (63%), Gaps = 7/122 (5%)
Query: 483 LQYNVDLLMDAKLNINKTTGAHQIDG-----LKQMLDGKTGMIRQNMMGKRVNFAGRSVI 537
LQY+V MD +I T A Q G ++ L GK G +R N+MGKRV+F+ R+VI
Sbjct: 307 LQYHVATYMDN--DIAGTPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVI 364
Query: 538 TPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
T DP L++D +GVP A+TLTYP VTP+N+ L K+V NGPN +PGA + DG+ +
Sbjct: 365 TGDPNLSLDEVGVPRSIARTLTYPETVTPYNINHLSKLVRNGPNDHPGAKYVMRADGTRI 424
Query: 598 RI 599
+
Sbjct: 425 DL 426
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 47/69 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N+ L K+V NGPN +PGA +
Sbjct: 358 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNINHLSKLVRNGPNDHPGAKYVM 417
Query: 74 NEDGSVVRI 82
DG+ + +
Sbjct: 418 RADGTRIDL 426
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 132 QEVKQLSVVKVFSPITFN-SLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
+E+K +SVV + P T + S GL D +G I +R C TC ++C GH GH
Sbjct: 27 EEIKNMSVVHILYPETMDESRMKPRDQGLNDPRLGSI-DRQFKCGTCDQQMSECPGHFGH 85
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKI 220
IEL PV + F + ++ +L++ C C KI
Sbjct: 86 IELAKPVFHPGFIKKIKKILEMVCHNCGKI 115
>gi|157741544|gb|ABV69477.1| RNA polymerase II largest subunit, partial [Staurothele fissa]
Length = 999
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 222 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 281
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L++D +GVP A+TLTYP VT +N L+++V+NGP +PGA I E G +
Sbjct: 282 DPNLSLDEVGVPRSIARTLTYPETVTRFNAEKLKQLVVNGPERHPGARYIIREHGERI 339
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 44/67 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N L+++V+NGP +PGA I
Sbjct: 273 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNAEKLKQLVVNGPERHPGARYII 332
Query: 74 NEDGSVV 80
E G +
Sbjct: 333 REHGERI 339
>gi|157741552|gb|ABV69481.1| RNA polymerase II largest subunit, partial [Thelidium decipiens]
Length = 999
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 222 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 281
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TLTYP VTP+N++ L+ ++I GP +PGA I E+
Sbjct: 282 DPNLSLDEVGVPRSIARTLTYPETVTPFNISKLKNLIIRGPENHPGARYIIREN 335
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N++ L+ ++I GP +PGA I
Sbjct: 273 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPFNISKLKNLIIRGPENHPGARYII 332
Query: 74 NED 76
E+
Sbjct: 333 REN 335
>gi|157741546|gb|ABV69478.1| RNA polymerase II largest subunit, partial [Staurothele immersa]
Length = 355
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 211 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 270
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TLTYP VTP+N++ L+ ++I GP +PGA I E+
Sbjct: 271 DPNLSLDEVGVPRSIARTLTYPETVTPFNISKLKNLIIRGPENHPGARYIIREN 324
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N++ L+ ++I GP +PGA I
Sbjct: 262 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPFNISKLKNLIIRGPENHPGARYII 321
Query: 74 NED 76
E+
Sbjct: 322 REN 324
>gi|157741510|gb|ABV69460.1| RNA polymerase II largest subunit, partial [Placidiopsis
cinerascens]
Length = 999
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 222 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 281
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L++D +GVP A+TLTYP VT +N L++ V NGP+++PGA I E G +
Sbjct: 282 DPNLSLDEVGVPRSIARTLTYPETVTRFNKERLKQFVTNGPDIHPGARYIIREQGERI 339
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 44/67 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N L++ V NGP+++PGA I
Sbjct: 273 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNKERLKQFVTNGPDIHPGARYII 332
Query: 74 NEDGSVV 80
E G +
Sbjct: 333 REQGERI 339
>gi|157741492|gb|ABV69451.1| RNA polymerase II largest subunit, partial [Dermatocarpon miniatum]
Length = 999
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 74/113 (65%), Gaps = 3/113 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 222 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 281
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
DP L++D +GVP A+TLTYP VT +N++ L+++V NGP ++PGA I E
Sbjct: 282 DPNLSLDEVGVPRSIARTLTYPETVTRFNISKLKQLVTNGPEMHPGARYIIRE 334
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 44/62 (70%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N++ L+++V NGP ++PGA I
Sbjct: 273 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISKLKQLVTNGPEMHPGARYII 332
Query: 74 NE 75
E
Sbjct: 333 RE 334
>gi|157741612|gb|ABV69511.1| RNA polymerase II largest subunit, partial [Verrucaria weddellii]
Length = 999
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 222 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 281
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TLTYP VT +N++ L+++V NGP +PGA I E+
Sbjct: 282 DPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKQLVTNGPEAHPGARYIIREN 335
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N++ L+++V NGP +PGA I
Sbjct: 273 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKQLVTNGPEAHPGARYII 332
Query: 74 NED 76
E+
Sbjct: 333 REN 335
>gi|3172134|gb|AAC18416.1| RNA polymerase II largest subunit [Bonnemaisonia hamifera]
Length = 1732
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 77/122 (63%), Gaps = 4/122 (3%)
Query: 483 LQYNVDLLMDAKL-NINKTT---GAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
+QY+V M+ +L I T G+ I + Q GK G +R N+MGKRV+F+ R+VIT
Sbjct: 203 VQYHVATYMNNELPGIMPATVRGGSRAIKSIGQRFKGKEGRVRGNLMGKRVDFSARTVIT 262
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVR 598
PDP L + +GVP A+ LTYP VT +N+ ++K+V NGP+ YPGA I+ EDG V
Sbjct: 263 PDPNLRLHEVGVPFSIARNLTYPEIVTSYNIDEMQKLVENGPDEYPGAKYIEREDGFKVN 322
Query: 599 IS 600
++
Sbjct: 323 LA 324
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 47/70 (67%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L + +GVP A+ LTYP VT +N+ ++K+V NGP+ YPGA I+
Sbjct: 255 FSARTVITPDPNLRLHEVGVPFSIARNLTYPEIVTSYNIDEMQKLVENGPDEYPGAKYIE 314
Query: 74 NEDGSVVRIS 83
EDG V ++
Sbjct: 315 REDGFKVNLA 324
>gi|157741504|gb|ABV69457.1| RNA polymerase II largest subunit, partial [Heteroplacidium
imbricatum]
Length = 999
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 74/113 (65%), Gaps = 3/113 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 222 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 281
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
DP L++D +GVP A+TLTYP VT +N++ L+++V NGP ++PGA I E
Sbjct: 282 DPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKQLVTNGPEMHPGARYIIRE 334
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 44/62 (70%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N++ L+++V NGP ++PGA I
Sbjct: 273 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKQLVTNGPEMHPGARYII 332
Query: 74 NE 75
E
Sbjct: 333 RE 334
>gi|226876213|gb|ACO89427.1| RNA polymerase II largest subunit, partial [Chaetothyriales sp.
TRN210]
Length = 957
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 75/118 (63%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY++ MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 210 LQYHIATYMDNDIAGLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 269
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L++D +GVP A+TLTYP VTP+N+ L+++V NGP +PGA + + G +
Sbjct: 270 DPNLSLDEVGVPRSIARTLTYPEVVTPFNIDKLKRLVANGPTEHPGARYVIRDTGERI 327
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 45/67 (67%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N+ L+++V NGP +PGA +
Sbjct: 261 FSARTVITGDPNLSLDEVGVPRSIARTLTYPEVVTPFNIDKLKRLVANGPTEHPGARYVI 320
Query: 74 NEDGSVV 80
+ G +
Sbjct: 321 RDTGERI 327
>gi|170106087|ref|XP_001884255.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164640601|gb|EDR04865.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 1397
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 72/120 (60%), Gaps = 1/120 (0%)
Query: 475 KLQNSWHELQYNVDLLMDAKL-NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
+ W LQ +V + ++++L + G I G Q L GK G R N+ GKRV+F+G
Sbjct: 299 QFMEQWEFLQLSVAMYINSELPGVPSQPGQKPIRGFVQRLKGKQGRFRGNLSGKRVDFSG 358
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
R+VI+PDP L ID + VP AK LTYP VT N+ LR+ + NGP+V+PGAN + D
Sbjct: 359 RTVISPDPNLRIDEVAVPERVAKILTYPERVTTHNINALRQAIRNGPDVHPGANFVARGD 418
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 41/63 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP AK LTYP VT N+ LR+ + NGP+V+PGAN +
Sbjct: 356 FSGRTVISPDPNLRIDEVAVPERVAKILTYPERVTTHNINALRQAIRNGPDVHPGANFVA 415
Query: 74 NED 76
D
Sbjct: 416 RGD 418
Score = 47.0 bits (110), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 155 IPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSC 214
+ G+ D +G +++G C TCG + C GH +I+L VPV + +F+ +L+ C
Sbjct: 48 VKNGVLDRRLG-TTDKGAFCETCGQSSVNCVGHYAYIKLVVPVFHIGYFKHTIAVLQAIC 106
Query: 215 FLCHKINIPAT 225
C ++ + T
Sbjct: 107 KTCARVLLEET 117
>gi|169869303|ref|XP_001841218.1| DNA-directed RNA polymerase III largest subunit [Coprinopsis
cinerea okayama7#130]
gi|116497686|gb|EAU80581.1| DNA-directed RNA polymerase III largest subunit [Coprinopsis
cinerea okayama7#130]
Length = 1403
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 79/133 (59%), Gaps = 2/133 (1%)
Query: 475 KLQNSWHELQYNVDLLMDAKL-NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
+ W LQ +V + ++++L + G I G Q L GK G R N+ GKRV+F+G
Sbjct: 299 QFMEQWEFLQLSVAMYINSELPGVPSQMGQKPIRGFVQRLKGKQGRFRGNLSGKRVDFSG 358
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI-QNE 592
R+VI+PDP L ID + VP AK LTYP VT N+ LR+ + NGP+V+PGAN + + E
Sbjct: 359 RTVISPDPNLRIDEVAVPERVAKILTYPERVTMHNIETLRQAIRNGPDVHPGANYVARGE 418
Query: 593 DGSVVRISSSQAV 605
++ + QA+
Sbjct: 419 TKKFLKFGNRQAI 431
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI- 72
F R+VI+PDP L ID + VP AK LTYP VT N+ LR+ + NGP+V+PGAN +
Sbjct: 356 FSGRTVISPDPNLRIDEVAVPERVAKILTYPERVTMHNIETLRQAIRNGPDVHPGANYVA 415
Query: 73 QNEDGSVVRISSSQAV 88
+ E ++ + QA+
Sbjct: 416 RGETKKFLKFGNRQAI 431
Score = 43.9 bits (102), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 158 GLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLC 217
G+ D +G +E+ C TCG + C GH +I+L VPV + +F+ +L+ C C
Sbjct: 51 GVLDRRLG-TTEKSAFCETCGQSSVNCVGHYAYIKLCVPVFHIGYFKHTIGILQSICKSC 109
Query: 218 HKINIPATSQLLFINQIK 235
++ + + ++ + +
Sbjct: 110 ARVLLEEPDRRTYLKRFR 127
>gi|4808166|emb|CAB42797.1| largest subunit of the RNA polymerase II complex [Drosophila
pseudoobscura]
Length = 1811
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 118/428 (27%), Positives = 176/428 (41%), Gaps = 99/428 (23%)
Query: 186 GHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQA 245
GH GHI+L PV + F +L+ CF C K+ + + I +I + G +
Sbjct: 1 GHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLV--SPHNPKIKEIVVKSKGQPRK- 57
Query: 246 KDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLS 305
+L + D L G IC+ GGE++ Q
Sbjct: 58 ------------------RLAYVYD------LCKGKTICE-----GGEDMDLTKDNQQPD 88
Query: 306 RHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGYV 364
+ K C YQ I + LD S + K N+ S +E+ V
Sbjct: 89 PNKKPGHGGCG------HYQP-------SIRRTGLDLSAEWKHPNEDS------QEKKIV 129
Query: 365 MASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMP 424
+++E + K T+E F+ + P + D M + L VPP +RP
Sbjct: 130 VSAERVWEILKHITDEECFILGMDP------KYARPDWMIVTVLPVPPLAVRP------- 176
Query: 425 PVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDL---LSEALKGIRGDTLNNKLQNSWH 481
+V+M K Q DL LS+ +K N + H
Sbjct: 177 ---------------------AVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAH 215
Query: 482 ELQYNVDLLMD--AKLNINKTTG---AHQIDG-----LKQMLDGKTGMIRQNMMGKRVNF 531
+Q N+ +L A L N G A Q G +K L GK G IR N+MGKRV+F
Sbjct: 216 VIQENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 275
Query: 532 AGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQN 591
+ R+VITPDP L ID +GVP A+ LT+P VTP+N+ ++++V G + YPGA I
Sbjct: 276 SARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVR 335
Query: 592 EDGSVVRI 599
++G + +
Sbjct: 336 DNGERIDL 343
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ LT+P VTP+N+ ++++V G + YPGA I
Sbjct: 275 FSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIV 334
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 335 RDNGERIDL 343
>gi|157741616|gb|ABV69513.1| RNA polymerase II largest subunit, partial [Verrucaria viridula]
Length = 999
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 222 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 281
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TLTYP VT +N++ L+++V NGP +PGA I E+
Sbjct: 282 DPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKQLVTNGPEAHPGARYIIREN 335
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N++ L+++V NGP +PGA I
Sbjct: 273 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKQLVTNGPEAHPGARYII 332
Query: 74 NED 76
E+
Sbjct: 333 REN 335
>gi|157741528|gb|ABV69469.1| RNA polymerase II largest subunit, partial [Placocarpus schaereri]
Length = 999
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 73/118 (61%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 222 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 281
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L++D +GVP A+TLTYP VT +N++ L+ V NGP +PGA + E G +
Sbjct: 282 DPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKAFVTNGPEAHPGARYVIRETGERI 339
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 43/67 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N++ L+ V NGP +PGA +
Sbjct: 273 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKAFVTNGPEAHPGARYVI 332
Query: 74 NEDGSVV 80
E G +
Sbjct: 333 RETGERI 339
>gi|157741622|gb|ABV69516.1| RNA polymerase II largest subunit, partial [Verrucula granulosaria]
Length = 999
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 73/118 (61%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 222 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 281
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L++D +GVP A+TLTYP VT +N++ L+ V NGP +PGA + E G +
Sbjct: 282 DPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKAFVTNGPEAHPGARYVIRETGERI 339
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 43/67 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N++ L+ V NGP +PGA +
Sbjct: 273 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKAFVTNGPEAHPGARYVI 332
Query: 74 NEDGSVV 80
E G +
Sbjct: 333 RETGERI 339
>gi|157741490|gb|ABV69450.1| RNA polymerase II largest subunit, partial [Dermatocarpon luridum]
Length = 999
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 74/113 (65%), Gaps = 3/113 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 222 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 281
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
DP L++D +GVP A+TLTYP VT +N++ L+++V NGP ++PGA I E
Sbjct: 282 DPNLSLDEVGVPRSIARTLTYPETVTRFNISKLKQLVTNGPEMHPGARYIIRE 334
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 44/62 (70%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N++ L+++V NGP ++PGA I
Sbjct: 273 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISKLKQLVTNGPEMHPGARYII 332
Query: 74 NE 75
E
Sbjct: 333 RE 334
>gi|206601401|gb|ACI16419.1| RNA polymerase II largest subunit [Placopyrenium fuscellum]
Length = 357
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 211 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 270
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TLTYP VT +N+ L+++V NGP ++PGA I E+
Sbjct: 271 DPNLSLDEVGVPRSIARTLTYPETVTRFNIERLKQLVTNGPQMHPGARYIIREN 324
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N+ L+++V NGP ++PGA I
Sbjct: 262 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNIERLKQLVTNGPQMHPGARYII 321
Query: 74 NED 76
E+
Sbjct: 322 REN 324
>gi|291336401|gb|ADD95958.1| hypothetical protein [uncultured organism MedDCM-OCT-S04-C1]
Length = 1064
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 77/133 (57%), Gaps = 13/133 (9%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTG--------AHQIDGLKQMLDGKTGMIRQNMMGK 527
+++ W LQY+V D N+T+G + L Q L GK G R N+ GK
Sbjct: 290 VEDLWELLQYHVTTYFD-----NQTSGIPPARHRSGRTLKTLTQRLKGKEGRFRSNLSGK 344
Query: 528 RVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGAN 587
RVNF RSVI+PDPYL ++ +GVP + AK LT P+ VT N +R+M++ GP+V+PG N
Sbjct: 345 RVNFCARSVISPDPYLGVNEVGVPTKIAKELTVPIRVTTRNREQMRQMILRGPDVHPGVN 404
Query: 588 MIQNEDGSVVRIS 600
+ D VRI+
Sbjct: 405 YVIRGDKRRVRIN 417
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDPYL ++ +GVP + AK LT P+ VT N +R+M++ GP+V+PG N +
Sbjct: 348 FCARSVISPDPYLGVNEVGVPTKIAKELTVPIRVTTRNREQMRQMILRGPDVHPGVNYVI 407
Query: 74 NEDGSVVRIS 83
D VRI+
Sbjct: 408 RGDKRRVRIN 417
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 133 EVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIE 192
E++++S V+V + T+ GH GL D MG I E G C T Y + GH GHI+
Sbjct: 25 EIRKMSSVEVKTADTYKDDGHAYRQGLMDPHMGVI-EPGLLCPTDNCKYDESPGHFGHIQ 83
Query: 193 LPVPVINTLFFRDVQLLLKLSCFLCHKI 220
L +PVI+ F ++ LK +C C KI
Sbjct: 84 LELPVIHIGFVNLIKTALKATCNSCSKI 111
>gi|15679064|ref|NP_276181.1| DNA-directed RNA polymerase subunit A' [Methanothermobacter
thermautotrophicus str. Delta H]
gi|6685898|sp|O27125.1|RPOA1_METTH RecName: Full=DNA-directed RNA polymerase subunit A'
gi|2622150|gb|AAB85542.1| DNA-dependent RNA polymerase, subunit A' [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 870
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 78/132 (59%), Gaps = 13/132 (9%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTG--------AHQIDGLKQMLDGKTGMIRQNMMGK 527
+++ W LQY+V D N+ +G + L Q L GK G R N+ GK
Sbjct: 258 VEDLWELLQYHVTTYFD-----NEASGVPPARHRSGRPLKTLAQRLKGKEGRFRSNLSGK 312
Query: 528 RVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGAN 587
RVNF+ R+VI+PDP ++I+ +GVP A+ +T PV VT WN+ +R+ + NGP+V+PGAN
Sbjct: 313 RVNFSARTVISPDPNISINEVGVPEIIAREVTVPVYVTEWNIDRMREYIENGPDVHPGAN 372
Query: 588 MIQNEDGSVVRI 599
+ DG +RI
Sbjct: 373 YVIRPDGRKIRI 384
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP ++I+ +GVP A+ +T PV VT WN+ +R+ + NGP+V+PGAN +
Sbjct: 316 FSARTVISPDPNISINEVGVPEIIAREVTVPVYVTEWNIDRMREYIENGPDVHPGANYVI 375
Query: 74 NEDGSVVRI 82
DG +RI
Sbjct: 376 RPDGRKIRI 384
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 7/98 (7%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDP---CTTCGNNYTKCKGHI 188
++++++SV ++ +P T++ G+ I GL D +G I DP C TCG +C GH
Sbjct: 19 EDIRKMSVTQIVTPDTYDEDGYPIENGLMDPRLGVI----DPSLRCRTCGAKGGECPGHF 74
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATS 226
G I L PVI+ F + +L+ +C C ++ + T
Sbjct: 75 GSINLARPVIHVGFADTIHKILRSTCRKCGRVLLTETE 112
>gi|157741506|gb|ABV69458.1| RNA polymerase II largest subunit, partial [Neocatapyrenium
rhizinosum]
Length = 999
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 222 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 281
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TLTYP VT +N++ L+++V NGP +PGA I E+
Sbjct: 282 DPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKQLVTNGPEAHPGARYIIREN 335
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N++ L+++V NGP +PGA I
Sbjct: 273 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKQLVTNGPEAHPGARYII 332
Query: 74 NED 76
E+
Sbjct: 333 REN 335
>gi|206601409|gb|ACI16423.1| RNA polymerase II largest subunit [Trimmatothele perquisita]
Length = 392
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 230 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 289
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TLTYP VT +N++ L++ V NGP ++PGA I E+
Sbjct: 290 DPNLSLDEVGVPRSIARTLTYPETVTQFNISRLKQFVTNGPEMHPGARYIIREN 343
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N++ L++ V NGP ++PGA I
Sbjct: 281 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTQFNISRLKQFVTNGPEMHPGARYII 340
Query: 74 NED 76
E+
Sbjct: 341 REN 343
>gi|206601348|gb|ACI16393.1| RNA polymerase II largest subunit [Thelidium pyrenophorum]
Length = 356
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 211 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 270
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TLTYP VTP+N++ L+ +++ GP +PGA I E+
Sbjct: 271 DPNLSLDEVGVPRSIARTLTYPETVTPFNISKLKNLIVRGPEHHPGARYIIREN 324
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 44/63 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N++ L+ +++ GP +PGA I
Sbjct: 262 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPFNISKLKNLIVRGPEHHPGARYII 321
Query: 74 NED 76
E+
Sbjct: 322 REN 324
>gi|157741496|gb|ABV69453.1| RNA polymerase II largest subunit, partial [Endocarpon
petrolepideum]
Length = 964
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 213 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 272
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TLTYP VT +N++ L+++V NGP +PGA I E+
Sbjct: 273 DPNLSLDEVGVPRSIARTLTYPETVTRFNISKLKQLVTNGPEAHPGARYIIREN 326
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N++ L+++V NGP +PGA I
Sbjct: 264 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISKLKQLVTNGPEAHPGARYII 323
Query: 74 NED 76
E+
Sbjct: 324 REN 326
>gi|241633681|ref|XP_002408700.1| DNA-directed RNA polymerase II largest subunit, putative [Ixodes
scapularis]
gi|215501234|gb|EEC10728.1| DNA-directed RNA polymerase II largest subunit, putative [Ixodes
scapularis]
Length = 1394
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 63/91 (69%)
Query: 508 GLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPW 567
G Q L GK G R N+ GKRV+F+GR+VI+PDP L ID +GVP+ AK LTYP VT
Sbjct: 340 GFVQRLKGKHGRFRGNLSGKRVDFSGRTVISPDPNLRIDQVGVPVHVAKILTYPERVTQH 399
Query: 568 NVTLLRKMVINGPNVYPGANMIQNEDGSVVR 598
N+ L+R +V NGP+V+PGAN +++ D R
Sbjct: 400 NLALMRTLVRNGPDVHPGANFLESRDSGFKR 430
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 47/68 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID +GVP+ AK LTYP VT N+ L+R +V NGP+V+PGAN ++
Sbjct: 363 FSGRTVISPDPNLRIDQVGVPVHVAKILTYPERVTQHNLALMRTLVRNGPDVHPGANFLE 422
Query: 74 NEDGSVVR 81
+ D R
Sbjct: 423 SRDSGFKR 430
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 57/114 (50%), Gaps = 3/114 (2%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITF--NSLGHTIPGGLYDLAMGPISERGDPCTTCGNNY 181
++ +++QLS V S + +SL +P G+ D +G S++ C TCG
Sbjct: 18 MRFGVLNSHDIQQLSHVHCVSKNLYQRDSLHKAVPYGVLDNKLG-TSQKDKKCETCGKGL 76
Query: 182 TKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
C GH G ++L +PV + +FR Q +L C C ++ +P + F++ ++
Sbjct: 77 ADCIGHYGLVDLELPVFHVGYFRATQNILHCVCKTCARVLVPPQERQGFLDALQ 130
>gi|226876235|gb|ACO89438.1| RNA polymerase II largest subunit, partial [Chaetothyriales sp.
TRN515]
Length = 983
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 75/118 (63%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY++ MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 210 LQYHIATYMDNDIAGLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 269
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L++D +GVP A+TLTYP VTP+N+ L+++V NGP +PGA + + G +
Sbjct: 270 DPNLSLDEVGVPRSIARTLTYPEVVTPFNIDKLKRLVANGPTEHPGARYVIRDTGERI 327
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 45/67 (67%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N+ L+++V NGP +PGA +
Sbjct: 261 FSARTVITGDPNLSLDEVGVPRSIARTLTYPEVVTPFNIDKLKRLVANGPTEHPGARYVI 320
Query: 74 NEDGSVV 80
+ G +
Sbjct: 321 RDTGERI 327
>gi|206601407|gb|ACI16422.1| RNA polymerase II largest subunit [Polyblastia sendtneri]
Length = 355
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 80/133 (60%), Gaps = 3/133 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 211 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 270
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
DP L++D +GVP A+TLTYP VTP+N++ L+ +V GP +PGA I E+ + +
Sbjct: 271 DPNLSLDEVGVPRSIARTLTYPENVTPFNISRLKWLVTRGPENHPGARYIIRENNERIDL 330
Query: 600 SSSQAVQRESLAK 612
+ Q +L K
Sbjct: 331 RYHKERQNIALKK 343
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 50/82 (60%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N++ L+ +V GP +PGA I
Sbjct: 262 FSARTVITGDPNLSLDEVGVPRSIARTLTYPENVTPFNISRLKWLVTRGPENHPGARYII 321
Query: 74 NEDGSVVRISSSQAVQRESLAK 95
E+ + + + Q +L K
Sbjct: 322 RENNERIDLRYHKERQNIALKK 343
>gi|47216067|emb|CAG04806.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1319
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 59/141 (41%), Positives = 81/141 (57%), Gaps = 4/141 (2%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
+ W LQ L ++++L+ A + G Q L GK G R N+ GKRV+F+G
Sbjct: 250 IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 309
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
R+VI+PDP L ID + VP+ AK LTYP V N+ L+RK+V NGP V+PGAN IQN
Sbjct: 310 RTVISPDPNLRIDEVAVPVHVAKILTYPERVNKANLELMRKLVRNGPEVHPGANFIQNRY 369
Query: 594 GSVVRISSSQAVQRESLAKRL 614
+ R + RE +A+ L
Sbjct: 370 NQIKRF--LKYGNREKIAQEL 388
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP+ AK LTYP V N+ L+RK+V NGP V+PGAN IQ
Sbjct: 307 FSGRTVISPDPNLRIDEVAVPVHVAKILTYPERVNKANLELMRKLVRNGPEVHPGANFIQ 366
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
N + R + RE +A+ L
Sbjct: 367 NRYNQIKRF--LKYGNREKIAQEL 388
Score = 45.4 bits (106), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 132 QEVKQLSVVKVFSPITFN-SLGHT-IPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
++++Q + ++V S ++ HT + G+ D MG SE+ PC TCG C GH G
Sbjct: 26 EQMRQQAHIQVVSKNLYSQDTAHTPLAYGVLDHRMG-TSEKDRPCLTCGKTLADCLGHYG 84
Query: 190 HIELPVPVINTLFFRDV 206
+++L +P + +F+ +
Sbjct: 85 YLDLELPCFHIGYFKAI 101
>gi|157741560|gb|ABV69485.1| RNA polymerase II largest subunit, partial [Hydropunctaria
adriatica]
Length = 988
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 73/113 (64%), Gaps = 3/113 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 211 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 270
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
DP L++D +GVP A+TLTYP VT +N++ L++ V NGP ++PGA I E
Sbjct: 271 DPNLSLDEVGVPRSIARTLTYPETVTQFNISRLKQFVTNGPEMHPGARYIIRE 323
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 43/62 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N++ L++ V NGP ++PGA I
Sbjct: 262 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTQFNISRLKQFVTNGPEMHPGARYII 321
Query: 74 NE 75
E
Sbjct: 322 RE 323
>gi|157741508|gb|ABV69459.1| RNA polymerase II largest subunit, partial [Placidiopsis
cartilaginea]
Length = 989
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 222 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 281
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L++D +GVP A+TLTYP VT +N L++ V NGP+++PGA I E G +
Sbjct: 282 DPNLSLDEVGVPRSIARTLTYPETVTRFNKDRLKQFVTNGPDIHPGARYIIREQGERI 339
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 44/67 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N L++ V NGP+++PGA I
Sbjct: 273 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNKDRLKQFVTNGPDIHPGARYII 332
Query: 74 NEDGSVV 80
E G +
Sbjct: 333 REQGERI 339
>gi|157741572|gb|ABV69491.1| RNA polymerase II largest subunit, partial [Verrucaria dolosa]
Length = 999
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 222 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 281
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TLTYP VT +N++ L++ V NGP ++PGA I E+
Sbjct: 282 DPNLSLDEVGVPRSIARTLTYPETVTQFNISRLKQFVTNGPEMHPGARYIIREN 335
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N++ L++ V NGP ++PGA I
Sbjct: 273 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTQFNISRLKQFVTNGPEMHPGARYII 332
Query: 74 NED 76
E+
Sbjct: 333 REN 335
>gi|391343926|ref|XP_003746256.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit RPC1-like [Metaseiulus occidentalis]
Length = 1386
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 65/86 (75%)
Query: 508 GLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPW 567
G+ Q L GK G RQN+ GKRV+F+GR+VI+PDP L+ID +G+P+ AK LT+P VT
Sbjct: 341 GIIQRLKGKEGRFRQNLSGKRVDFSGRTVISPDPNLHIDQVGIPVHMAKILTFPEMVTRH 400
Query: 568 NVTLLRKMVINGPNVYPGANMIQNED 593
N+ L++KMV+NGP+ +PGAN I+ +
Sbjct: 401 NLDLMKKMVMNGPDKHPGANFIEGRN 426
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 47/63 (74%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L+ID +G+P+ AK LT+P VT N+ L++KMV+NGP+ +PGAN I+
Sbjct: 364 FSGRTVISPDPNLHIDQVGIPVHMAKILTFPEMVTRHNLDLMKKMVMNGPDKHPGANFIE 423
Query: 74 NED 76
+
Sbjct: 424 GRN 426
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 78/176 (44%), Gaps = 12/176 (6%)
Query: 103 QQHRAIMKEKIITRQEVVPEILKLKYYTDQEVKQLSVVKVFSP---ITFNSLG-HTIPGG 158
+Q+RA E + RQ + T E+ LS +K + I +S G P G
Sbjct: 4 EQYRAT-GETVEVRQ------MAFGILTPDEIGALSHIKCVNKSLYIADHSKGRQASPYG 56
Query: 159 LYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCH 218
+ D +G S R C TCG T+C GH G+I+L PV + FFR+ +L+ C C
Sbjct: 57 VLDPKLG-TSSRAGVCETCGKGLTECVGHFGYIDLECPVFHCGFFRECINILQCICKNCA 115
Query: 219 KINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQ 274
I +P + + +I+ + YVT+ E L L+ Q V+ V+
Sbjct: 116 HILLPDEIKDKYRQRIQSRELDYVTKKHLHTEILEKCRKLQGKTCPKCQFVNGFVK 171
>gi|111154418|gb|ABH07423.1| RNA polymerase II largest subunit [Monascus purpureus]
Length = 382
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 82/133 (61%), Gaps = 7/133 (5%)
Query: 483 LQYNVDLLMDAKLNINKTTGAHQ-----IDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVI 537
LQY+V MD +I A Q + ++ L GK G +RQN+MGKRV+F+ R+VI
Sbjct: 228 LQYHVATYMDN--DIAGQPKAMQKSNRPVKAIRSRLKGKEGRLRQNLMGKRVDFSARTVI 285
Query: 538 TPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
T DP L++D +GVP AKTLTYP VTP+N+ L+++V+NGPN +PGA I + G +
Sbjct: 286 TGDPNLSLDEVGVPKSIAKTLTYPEVVTPYNIDKLQQLVMNGPNEHPGARYIIRDTGERI 345
Query: 598 RISSSQAVQRESL 610
+ ++ + L
Sbjct: 346 DLRHAKRAGGQQL 358
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 52/80 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP AKTLTYP VTP+N+ L+++V+NGPN +PGA I
Sbjct: 279 FSARTVITGDPNLSLDEVGVPKSIAKTLTYPEVVTPYNIDKLQQLVMNGPNEHPGARYII 338
Query: 74 NEDGSVVRISSSQAVQRESL 93
+ G + + ++ + L
Sbjct: 339 RDTGERIDLRHAKRAGGQQL 358
>gi|157741526|gb|ABV69468.1| RNA polymerase II largest subunit, partial [Placidium sp. AFTOL
2237]
Length = 978
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 73/113 (64%), Gaps = 3/113 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 213 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 272
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
DP L++D +GVP A+TLTYP VT +N++ L++ V NGP ++PGA I E
Sbjct: 273 DPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKQFVTNGPEMHPGARYIIRE 325
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 43/62 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N++ L++ V NGP ++PGA I
Sbjct: 264 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKQFVTNGPEMHPGARYII 323
Query: 74 NE 75
E
Sbjct: 324 RE 325
>gi|157741500|gb|ABV69455.1| RNA polymerase II largest subunit, partial [Endocarpon pusillum]
Length = 999
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 222 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 281
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TLTYP VT +N++ L+++V NGP +PGA I E+
Sbjct: 282 DPNLSLDEVGVPRSIARTLTYPETVTRFNISKLKQLVTNGPEAHPGARYIIREN 335
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N++ L+++V NGP +PGA I
Sbjct: 273 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISKLKQLVTNGPEAHPGARYII 332
Query: 74 NED 76
E+
Sbjct: 333 REN 335
>gi|226876253|gb|ACO89447.1| RNA polymerase II largest subunit, partial [Byssochlamys nivea]
Length = 360
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 83/133 (62%), Gaps = 7/133 (5%)
Query: 483 LQYNVDLLMDAKLNINKTTGAHQ-----IDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVI 537
LQY+V MD +I A Q + ++ L GK G +RQN+MGKRV+F+ R+VI
Sbjct: 215 LQYHVATYMDN--DIAGQPKAMQKSNRPVKAIRGRLKGKEGRLRQNLMGKRVDFSARTVI 272
Query: 538 TPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
T DP L++D +GVP A+TLTYP VTP+N+ L+++V+NGPN +PGA I ++G +
Sbjct: 273 TGDPNLSLDEVGVPRSIARTLTYPEVVTPYNIDKLQQLVMNGPNEHPGARYIVRDNGERI 332
Query: 598 RISSSQAVQRESL 610
+ ++ + L
Sbjct: 333 DLRHARRAGGQQL 345
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 53/80 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N+ L+++V+NGPN +PGA I
Sbjct: 266 FSARTVITGDPNLSLDEVGVPRSIARTLTYPEVVTPYNIDKLQQLVMNGPNEHPGARYIV 325
Query: 74 NEDGSVVRISSSQAVQRESL 93
++G + + ++ + L
Sbjct: 326 RDNGERIDLRHARRAGGQQL 345
>gi|401882581|gb|EJT46834.1| DNA-directed RNA polymerase iii largest subunit [Trichosporon
asahii var. asahii CBS 2479]
Length = 1433
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 78/133 (58%), Gaps = 1/133 (0%)
Query: 468 RGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGK 527
+G L + N W L V L ++++ TTG+ I G Q L GK G R N+ GK
Sbjct: 315 KGQGLTQTILN-WDTLSQMVALYINSQTPGINTTGSKPIRGFVQRLKGKQGRFRGNLSGK 373
Query: 528 RVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGAN 587
RV+F+GR+VI PDP L ID + VP + A L+YP VT +N+ +RK V+NG ++PGAN
Sbjct: 374 RVDFSGRTVIGPDPNLRIDEVAVPEKIAVKLSYPERVTDYNMEAMRKAVVNGSKMHPGAN 433
Query: 588 MIQNEDGSVVRIS 600
+I+ G R S
Sbjct: 434 IIETGRGPFPRRS 446
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI PDP L ID + VP + A L+YP VT +N+ +RK V+NG ++PGAN+I+
Sbjct: 377 FSGRTVIGPDPNLRIDEVAVPEKIAVKLSYPERVTDYNMEAMRKAVVNGSKMHPGANIIE 436
Query: 74 NEDGSVVRISSS--QAVQRESLAKRLITPEDQQHRAIMKEKII 114
G R S + ++R R + D HR + I+
Sbjct: 437 TGRGPFPRRSLQPIKDIERRKEMARNLRVGDIVHRHVRDGDIV 479
>gi|157741540|gb|ABV69475.1| RNA polymerase II largest subunit, partial [Endocarpon
diffractellum]
Length = 999
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 222 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 281
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TLTYP VT +N++ L+++V NGP +PGA I E+
Sbjct: 282 DPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKQLVTNGPEAHPGARYIIREN 335
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N++ L+++V NGP +PGA I
Sbjct: 273 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKQLVTNGPEAHPGARYII 332
Query: 74 NED 76
E+
Sbjct: 333 REN 335
>gi|111278789|gb|ABH09092.1| RNA polymerase II largest subunit [Endocarpon pallidulum]
Length = 1010
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 225 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 284
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TLTYP VT +N++ L+++V NGP +PGA I E+
Sbjct: 285 DPNLSLDEVGVPRSIARTLTYPETVTRFNISKLKQLVTNGPEAHPGARYIIREN 338
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N++ L+++V NGP +PGA I
Sbjct: 276 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISKLKQLVTNGPEAHPGARYII 335
Query: 74 NED 76
E+
Sbjct: 336 REN 338
>gi|406700618|gb|EKD03783.1| DNA-directed RNA polymerase iii largest subunit [Trichosporon
asahii var. asahii CBS 8904]
Length = 1433
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 78/133 (58%), Gaps = 1/133 (0%)
Query: 468 RGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGK 527
+G L + N W L V L ++++ TTG+ I G Q L GK G R N+ GK
Sbjct: 315 KGQGLTQTILN-WDTLSQMVALYINSQTPGINTTGSKPIRGFVQRLKGKQGRFRGNLSGK 373
Query: 528 RVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGAN 587
RV+F+GR+VI PDP L ID + VP + A L+YP VT +N+ +RK V+NG ++PGAN
Sbjct: 374 RVDFSGRTVIGPDPNLRIDEVAVPEKIAVKLSYPERVTDYNMEAMRKAVVNGSKMHPGAN 433
Query: 588 MIQNEDGSVVRIS 600
+I+ G R S
Sbjct: 434 IIETGRGPFPRRS 446
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI PDP L ID + VP + A L+YP VT +N+ +RK V+NG ++PGAN+I+
Sbjct: 377 FSGRTVIGPDPNLRIDEVAVPEKIAVKLSYPERVTDYNMEAMRKAVVNGSKMHPGANIIE 436
Query: 74 NEDGSVVRISSS--QAVQRESLAKRLITPEDQQHRAIMKEKII 114
G R S + ++R R + D HR + I+
Sbjct: 437 TGRGPFPRRSLQPIKDIERRKEMARNLRVGDIVHRHVRDGDIV 479
>gi|206601361|gb|ACI16399.1| RNA polymerase II largest subunit [Polyblastia abscondita]
Length = 356
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 211 LQYHVATYMDNDIAHLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 270
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TLTYP VTP+N++ L+ +++ GP +PGA I E+
Sbjct: 271 DPNLSLDEVGVPRSIARTLTYPETVTPFNISKLKNLIVRGPENHPGARYIIREN 324
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 44/63 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N++ L+ +++ GP +PGA I
Sbjct: 262 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPFNISKLKNLIVRGPENHPGARYII 321
Query: 74 NED 76
E+
Sbjct: 322 REN 324
>gi|226876164|gb|ACO89403.1| RNA polymerase II largest subunit, partial [Capronia sp. WUC 315]
Length = 983
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 75/118 (63%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY++ MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 220 LQYHIATYMDNEIAGLDRAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 279
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L++D +GVP A+ LTYP VTP+N+ L+++V NGPN +PGA + + G +
Sbjct: 280 DPNLSLDEVGVPRSIARNLTYPETVTPFNLDKLKRLVANGPNEHPGARYVIRDTGERI 337
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 45/67 (67%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+ LTYP VTP+N+ L+++V NGPN +PGA +
Sbjct: 271 FSARTVITGDPNLSLDEVGVPRSIARNLTYPETVTPFNLDKLKRLVANGPNEHPGARYVI 330
Query: 74 NEDGSVV 80
+ G +
Sbjct: 331 RDTGERI 337
>gi|206601342|gb|ACI16390.1| RNA polymerase II largest subunit [Verrucaria deversa]
Length = 335
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 188 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 247
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TLTYP VTP+N++ L+ +++ GP +PGA I E+
Sbjct: 248 DPNLSLDEVGVPRSIARTLTYPETVTPFNISKLKNLIVRGPEHHPGARYIIREN 301
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 44/63 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N++ L+ +++ GP +PGA I
Sbjct: 239 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPFNISKLKNLIVRGPEHHPGARYII 298
Query: 74 NED 76
E+
Sbjct: 299 REN 301
>gi|157741594|gb|ABV69502.1| RNA polymerase II largest subunit, partial [Hydropunctaria maura]
Length = 999
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 73/113 (64%), Gaps = 3/113 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 222 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 281
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
DP L++D +GVP A+TLTYP VT +N++ L++ V NGP ++PGA I E
Sbjct: 282 DPNLSLDEVGVPRSIARTLTYPETVTQFNISRLKQFVTNGPEMHPGARYIIRE 334
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 43/62 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N++ L++ V NGP ++PGA I
Sbjct: 273 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTQFNISRLKQFVTNGPEMHPGARYII 332
Query: 74 NE 75
E
Sbjct: 333 RE 334
>gi|145529488|ref|XP_001450527.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124418149|emb|CAK83130.1| unnamed protein product [Paramecium tetraurelia]
Length = 1696
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 97/185 (52%), Gaps = 8/185 (4%)
Query: 113 IITRQEVVPEILK---LKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMG-PIS 168
++T Q V+ + ++ YYT +E++++SV ++ +P F+ L H I GGLYD A+G
Sbjct: 13 MLTDQSVITKRIQSVHFGYYTAKEIREMSVKEISNPKAFDKLNHPIRGGLYDPALGVQPH 72
Query: 169 ERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQL 228
ERG C TCG C GH+GHIEL +PV N + L++ C+ CHK+ I +
Sbjct: 73 ERGTRCVTCGQENMDCTGHVGHIELLLPVYNPYLVNQLMSLMRSKCYYCHKLRITKDRKK 132
Query: 229 LFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDIND 288
+ N KLL G + + K ++ + LRL+ + ++ QSI A T +
Sbjct: 133 FYKNNFKLLRLGRLIEMKKYQKLYMTK--LRLNKQ--TKNAENRKQSITATDTSRKGSDH 188
Query: 289 YKGGE 293
KG +
Sbjct: 189 RKGSD 193
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 96/170 (56%), Gaps = 9/170 (5%)
Query: 450 AMKNKEQSDLLSEALKGI-RGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDG 508
+M+ +QSD + LK I R DT+ K W ELQ V L++++ NK + G
Sbjct: 446 SMEALKQSDHMKNNLKKIIRLDTIMQK----WLELQDCVVGLVNSERAQNKQN--RETPG 499
Query: 509 LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWN 568
+KQ+L+ K G+ R MMGKRVNFA RSVI+PDP L+ + +GVP A+ L P V N
Sbjct: 500 VKQLLERKQGLFRMKMMGKRVNFACRSVISPDPLLSTNEVGVPTVLARKLIIPENVNSLN 559
Query: 569 VTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPE 618
+ +++NGP VYPGA Q EDG + + QR ++ + L + E
Sbjct: 560 QQYVADLIMNGP-VYPGALYFQ-EDGKKIALEYLTPQQRMAIVRELGSGE 607
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP L+ + +GVP A+ L P V N + +++NGP VYPGA Q
Sbjct: 522 FACRSVISPDPLLSTNEVGVPTVLARKLIIPENVNSLNQQYVADLIMNGP-VYPGALYFQ 580
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQ 103
EDG + + QR ++ + L + E++
Sbjct: 581 -EDGKKIALEYLTPQQRMAIVRELGSGENK 609
>gi|115492277|ref|XP_001210766.1| DNA-directed RNA polymerase II largest subunit [Aspergillus terreus
NIH2624]
gi|114197626|gb|EAU39326.1| DNA-directed RNA polymerase II largest subunit [Aspergillus terreus
NIH2624]
Length = 1742
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 83/133 (62%), Gaps = 7/133 (5%)
Query: 483 LQYNVDLLMDAKLNINKTTGAHQ-----IDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVI 537
LQY+V MD +I A Q + ++ L GK G +RQN+MGKRV+F+ R+VI
Sbjct: 312 LQYHVATYMDN--DIAGQPKAMQKSNRPVKAIRSRLKGKEGRLRQNLMGKRVDFSARTVI 369
Query: 538 TPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
T DP L++D +GVP A+TLTYP VTP+N+ L+++V+NGPN +PGA I ++G +
Sbjct: 370 TGDPNLSLDEVGVPKSIARTLTYPEVVTPYNIEKLQQLVMNGPNEHPGARYIVRDNGERI 429
Query: 598 RISSSQAVQRESL 610
+ ++ + L
Sbjct: 430 DLRHAKRAGGQQL 442
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 53/80 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N+ L+++V+NGPN +PGA I
Sbjct: 363 FSARTVITGDPNLSLDEVGVPKSIARTLTYPEVVTPYNIEKLQQLVMNGPNEHPGARYIV 422
Query: 74 NEDGSVVRISSSQAVQRESL 93
++G + + ++ + L
Sbjct: 423 RDNGERIDLRHAKRAGGQQL 442
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTI-PGGLYDLAMGPISERGDPCTTCGNNYT 182
++ ++ +E+K++SVV V P T + GL D +G I + + C TC
Sbjct: 19 IQFGLFSPEEIKRMSVVHVEYPETMDEQRQRPRTKGLNDPRLGTIDRQWN-CETCEEGQK 77
Query: 183 KCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPA-TSQLLFINQIKLLD 238
+C GH GHIEL PV + F ++ LL+ C C KI + S F+ +++ D
Sbjct: 78 ECPGHFGHIELATPVFHIGFLTKIKKLLETVCHNCGKIKADSIQSDPKFLEALRMRD 134
>gi|317419477|emb|CBN81514.1| DNA-directed RNA polymerase III subunit RPC1 [Dicentrarchus labrax]
Length = 1390
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 59/141 (41%), Positives = 81/141 (57%), Gaps = 4/141 (2%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
+ W LQ L ++++L+ A + G Q L GK G R N+ GKRV+F+G
Sbjct: 306 IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
R+VI+PDP L ID + VP+ AK LTYP V N+ L+RK+V NGP V+PGAN IQN
Sbjct: 366 RTVISPDPNLRIDEVAVPVHVAKILTYPERVNKANLELMRKLVRNGPEVHPGANFIQNRH 425
Query: 594 GSVVRISSSQAVQRESLAKRL 614
+ R + RE +A+ L
Sbjct: 426 TQMKRF--LKYGNREKIAQEL 444
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP+ AK LTYP V N+ L+RK+V NGP V+PGAN IQ
Sbjct: 363 FSGRTVISPDPNLRIDEVAVPVHVAKILTYPERVNKANLELMRKLVRNGPEVHPGANFIQ 422
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
N + R + RE +A+ L
Sbjct: 423 NRHTQMKRF--LKYGNREKIAQEL 444
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 158 GLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLC 217
G+ D MG SE+ PC TCG N C GH G+++L +P + +F+ + +L++ C C
Sbjct: 54 GVLDHRMG-TSEKDRPCLTCGKNLADCLGHYGYLDLELPCFHVGYFKAIIGILQMICKTC 112
Query: 218 HKINIPATSQLLFINQIKLLDAGYVTQ 244
I + +L F++ +K + Y+ +
Sbjct: 113 SSIMLTKEDKLQFMDHLKRPNLAYLQK 139
>gi|157741522|gb|ABV69466.1| RNA polymerase II largest subunit, partial [Placidium arboreum]
Length = 989
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 73/113 (64%), Gaps = 3/113 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 222 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 281
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
DP L++D +GVP A+TLTYP VT +N++ L++ V NGP ++PGA I E
Sbjct: 282 DPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKQFVTNGPEMHPGARYIIRE 334
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 43/62 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N++ L++ V NGP ++PGA I
Sbjct: 273 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKQFVTNGPEMHPGARYII 332
Query: 74 NE 75
E
Sbjct: 333 RE 334
>gi|410895601|ref|XP_003961288.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
[Takifugu rubripes]
Length = 1390
Score = 105 bits (262), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 59/141 (41%), Positives = 81/141 (57%), Gaps = 4/141 (2%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
+ W LQ L ++++L+ A + G Q L GK G R N+ GKRV+F+G
Sbjct: 306 IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
R+VI+PDP L ID + VP+ AK LTYP V N+ L+RK+V NGP V+PGAN IQN
Sbjct: 366 RTVISPDPNLRIDEVAVPVHVAKILTYPERVNKANLELMRKLVRNGPEVHPGANFIQNRF 425
Query: 594 GSVVRISSSQAVQRESLAKRL 614
+ R + RE +A+ L
Sbjct: 426 TQIKRF--LKYGNREKIAQEL 444
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP+ AK LTYP V N+ L+RK+V NGP V+PGAN IQ
Sbjct: 363 FSGRTVISPDPNLRIDEVAVPVHVAKILTYPERVNKANLELMRKLVRNGPEVHPGANFIQ 422
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
N + R + RE +A+ L
Sbjct: 423 NRFTQIKRF--LKYGNREKIAQEL 444
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 60/106 (56%), Gaps = 3/106 (2%)
Query: 132 QEVKQLSVVKVFSPITFN-SLGHT-IPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
++++Q + ++V S ++ HT + G+ D MG SE+ PC TCG N C GH G
Sbjct: 26 EQMRQQAHIQVVSKNLYSQDTSHTPLAYGVLDHRMG-TSEKDRPCLTCGKNLADCLGHYG 84
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
+++L +P + +F+ + +L++ C C I + +L F++Q+K
Sbjct: 85 YLDLELPCFHIGYFKAIIGILQMICKTCSSIMLNREEKLQFMDQLK 130
>gi|157741564|gb|ABV69487.1| RNA polymerase II largest subunit, partial [Placopyrenium canellum]
Length = 999
Score = 105 bits (262), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 222 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 281
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TLTYP VT +N+ L+++V NGP ++PGA I E+
Sbjct: 282 DPNLSLDEVGVPRSIARTLTYPETVTRFNIERLKQLVTNGPQMHPGARYIIREN 335
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N+ L+++V NGP ++PGA I
Sbjct: 273 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNIERLKQLVTNGPQMHPGARYII 332
Query: 74 NED 76
E+
Sbjct: 333 REN 335
>gi|66818062|ref|XP_642724.1| RNA polymerase III, largest subunit [Dictyostelium discoideum AX4]
gi|74860514|sp|Q86AQ5.1|RPC1_DICDI RecName: Full=DNA-directed RNA polymerase III subunit rpc1;
Short=RNA polymerase III subunit C1; AltName:
Full=DNA-directed RNA polymerase III subunit A
gi|60470813|gb|EAL68785.1| RNA polymerase III, largest subunit [Dictyostelium discoideum AX4]
Length = 1450
Score = 105 bits (262), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 63/89 (70%)
Query: 506 IDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVT 565
+ GL Q L GKTG R N+ GKRV+F+GR+VI+PDP LNID + VP A T+TYP VT
Sbjct: 331 VRGLSQRLKGKTGRFRGNLSGKRVDFSGRTVISPDPNLNIDEVAVPQLIALTMTYPERVT 390
Query: 566 PWNVTLLRKMVINGPNVYPGANMIQNEDG 594
+N+ L+K VINGP+ +PGAN I DG
Sbjct: 391 DYNIERLQKYVINGPDRHPGANYIIYADG 419
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 44/64 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP LNID + VP A T+TYP VT +N+ L+K VINGP+ +PGAN I
Sbjct: 356 FSGRTVISPDPNLNIDEVAVPQLIALTMTYPERVTDYNIERLQKYVINGPDRHPGANYII 415
Query: 74 NEDG 77
DG
Sbjct: 416 YADG 419
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 59/107 (55%), Gaps = 2/107 (1%)
Query: 130 TDQEVKQLSVVKVFSPITFNSLGHT-IPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
++ ++ +LS V++ + F+ + P G+ D +G S++ CTTCG + C GH
Sbjct: 23 SEDDIVRLSHVQIVNRELFDLVKRKPTPYGVLDNKLG-TSDKQAMCTTCGLSIVDCVGHF 81
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
G+I+L +PV + + +++ +L++ C C I + + ++ +++
Sbjct: 82 GYIKLQLPVFHIGYLKNIMNILQMICKSCSTILLNEEKKQYYLRKMR 128
>gi|157741516|gb|ABV69463.1| RNA polymerase II largest subunit, partial [Placidium lachneum]
Length = 989
Score = 105 bits (262), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 73/113 (64%), Gaps = 3/113 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 222 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 281
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
DP L++D +GVP A+TLTYP VT +N++ L++ V NGP ++PGA I E
Sbjct: 282 DPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKQFVTNGPEMHPGARYIIRE 334
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 43/62 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N++ L++ V NGP ++PGA I
Sbjct: 273 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKQFVTNGPEMHPGARYII 332
Query: 74 NE 75
E
Sbjct: 333 RE 334
>gi|189192955|ref|XP_001932816.1| DNA-directed RNA polymerase III subunit RPC1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187978380|gb|EDU45006.1| DNA-directed RNA polymerase III subunit RPC1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 1471
Score = 105 bits (262), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 83/148 (56%), Gaps = 9/148 (6%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQ-IDGLKQMLDGKTGMIRQNMMGKRVNFAGR 534
L W LQ + + +++ K G + + G Q L GK G RQN+ GKRV+F+GR
Sbjct: 321 LMEQWDFLQLQIAMYINSDAPGLKQQGLQKTMRGFSQRLKGKGGRFRQNLSGKRVDFSGR 380
Query: 535 SVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDG 594
+VI PDP L+ID + VP AK LTYP VT +N+ LR++V NG YPGAN I G
Sbjct: 381 TVIGPDPNLSIDEVAVPQRIAKNLTYPEKVTRYNIEKLRRLVRNGAQKYPGANYILTGQG 440
Query: 595 --------SVVRISSSQAVQRESLAKRL 614
S++ +S ++ + + AKRL
Sbjct: 441 PNKDPIKISLIALSRNKGERLDFTAKRL 468
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 53/92 (57%), Gaps = 8/92 (8%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI PDP L+ID + VP AK LTYP VT +N+ LR++V NG YPGAN I
Sbjct: 377 FSGRTVIGPDPNLSIDEVAVPQRIAKNLTYPEKVTRYNIEKLRRLVRNGAQKYPGANYIL 436
Query: 74 NEDG--------SVVRISSSQAVQRESLAKRL 97
G S++ +S ++ + + AKRL
Sbjct: 437 TGQGPNKDPIKISLIALSRNKGERLDFTAKRL 468
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 9/122 (7%)
Query: 106 RAIMKEKIITRQEVVPEILKLKYYTDQEVKQLSVVKV-------FSPITFNSLGHTIPGG 158
R K++++ R + ++ Y++Q++ +V++V P N+ T G
Sbjct: 5 RTTAKQQVVDRIPARIKHIQFGIYSNQDIVNQAVLEVSDRNVYDLQPGANNTRTLTSNGP 64
Query: 159 LYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCH 218
+ D+ MG S++G+ C TCG KC GH GHI+L +P + + + + +L C C
Sbjct: 65 M-DIHMGISSKQGN-CGTCGEGLDKCNGHFGHIKLALPAFHVGYLKHIIEVLNCICKDCS 122
Query: 219 KI 220
++
Sbjct: 123 RV 124
>gi|157741562|gb|ABV69486.1| RNA polymerase II largest subunit, partial [Placopyrenium canellum]
Length = 999
Score = 105 bits (262), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 222 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 281
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TLTYP VT +N+ L+++V NGP ++PGA I E+
Sbjct: 282 DPNLSLDEVGVPRSIARTLTYPETVTRFNIERLKQLVTNGPQMHPGARYIIREN 335
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N+ L+++V NGP ++PGA I
Sbjct: 273 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNIERLKQLVTNGPQMHPGARYII 332
Query: 74 NED 76
E+
Sbjct: 333 REN 335
>gi|304315186|ref|YP_003850333.1| DNA-directed RNA polymerase, subunit A' [Methanothermobacter
marburgensis str. Marburg]
gi|302588645|gb|ADL59020.1| DNA-directed RNA polymerase, subunit A' [Methanothermobacter
marburgensis str. Marburg]
Length = 1152
Score = 105 bits (262), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 77/132 (58%), Gaps = 13/132 (9%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTG--------AHQIDGLKQMLDGKTGMIRQNMMGK 527
+++ W LQY+V D N+ +G + L Q L GK G R N+ GK
Sbjct: 540 VEDLWELLQYHVTTYFD-----NEASGVPPARHRSGRPLKTLAQRLKGKEGRFRSNLSGK 594
Query: 528 RVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGAN 587
RVNF+ R+VI+PDP ++I+ +GVP A+ +T PV V WN+ +R+ + NGP+V+PGAN
Sbjct: 595 RVNFSARTVISPDPNISINEVGVPEIIAREVTVPVYVAEWNIDRMREYIENGPDVHPGAN 654
Query: 588 MIQNEDGSVVRI 599
+ DG +RI
Sbjct: 655 YVIRPDGRKIRI 666
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 47/69 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP ++I+ +GVP A+ +T PV V WN+ +R+ + NGP+V+PGAN +
Sbjct: 598 FSARTVISPDPNISINEVGVPEIIAREVTVPVYVAEWNIDRMREYIENGPDVHPGANYVI 657
Query: 74 NEDGSVVRI 82
DG +RI
Sbjct: 658 RPDGRKIRI 666
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 7/92 (7%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDP---CTTCGNNYTKCKGHI 188
++++++SV +V +P T++ G+ I GL D +G I DP C TCG +C GH
Sbjct: 19 EDIRKMSVTQVVTPDTYDEDGYPIENGLMDPRLGVI----DPSLRCRTCGAKGGECPGHF 74
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKI 220
G I L PVI+ F + +L+ C+ C ++
Sbjct: 75 GSINLARPVIHVGFADTIHKILRSICWKCGRV 106
>gi|157741534|gb|ABV69472.1| RNA polymerase II largest subunit, partial [Polyblastia cupularis]
Length = 999
Score = 105 bits (262), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 222 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 281
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TLTYP VTP+N++ L+ +V GP+ +PGA I E+
Sbjct: 282 DPNLSLDEVGVPRSIARTLTYPETVTPFNISRLKYLVTRGPDNHPGARYIIREN 335
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N++ L+ +V GP+ +PGA I
Sbjct: 273 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPFNISRLKYLVTRGPDNHPGARYII 332
Query: 74 NED 76
E+
Sbjct: 333 REN 335
>gi|226876233|gb|ACO89437.1| RNA polymerase II largest subunit, partial [Chaetothyriales sp.
TRN508]
Length = 983
Score = 105 bits (262), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 75/118 (63%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY++ MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 210 LQYHIATYMDNDIAGLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 269
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L++D +GVP A+TLTYP VTP+N+ L+++V NGP +PGA + + G +
Sbjct: 270 DPNLSLDEVGVPRSIARTLTYPEIVTPFNIDKLKRLVANGPTEHPGARYVIRDTGERI 327
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 45/67 (67%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N+ L+++V NGP +PGA +
Sbjct: 261 FSARTVITGDPNLSLDEVGVPRSIARTLTYPEIVTPFNIDKLKRLVANGPTEHPGARYVI 320
Query: 74 NEDGSVV 80
+ G +
Sbjct: 321 RDTGERI 327
>gi|206601385|gb|ACI16411.1| RNA polymerase II largest subunit [Polyblastia integrascens]
Length = 358
Score = 105 bits (262), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 211 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 270
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TLTYP VTP+N++ L+ +V GP+ +PGA I E+
Sbjct: 271 DPNLSLDEVGVPRSIARTLTYPETVTPFNISRLKYLVTRGPDNHPGARYIIREN 324
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N++ L+ +V GP+ +PGA I
Sbjct: 262 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPFNISRLKYLVTRGPDNHPGARYII 321
Query: 74 NED 76
E+
Sbjct: 322 REN 324
>gi|206601373|gb|ACI16405.1| RNA polymerase II largest subunit [Polyblastia abscondita]
Length = 338
Score = 105 bits (262), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 193 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 252
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TLTYP VTP+N++ L+ +++ GP +PGA I E+
Sbjct: 253 DPNLSLDEVGVPRSIARTLTYPETVTPFNISKLKNLIVRGPENHPGARYIIREN 306
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 44/63 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N++ L+ +++ GP +PGA I
Sbjct: 244 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPFNISKLKNLIVRGPENHPGARYII 303
Query: 74 NED 76
E+
Sbjct: 304 REN 306
>gi|157741584|gb|ABV69497.1| RNA polymerase II largest subunit, partial [Verrucaria hydrela]
Length = 999
Score = 105 bits (262), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 73/118 (61%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 222 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 281
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L++D +GVP A+TLTYP VT +N L+K V NGP+ +PGA I E G +
Sbjct: 282 DPNLSLDEVGVPRSIARTLTYPETVTRFNKERLKKFVTNGPDNHPGARYIVREQGERI 339
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N L+K V NGP+ +PGA I
Sbjct: 273 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNKERLKKFVTNGPDNHPGARYIV 332
Query: 74 NEDGSVV 80
E G +
Sbjct: 333 REQGERI 339
>gi|157741494|gb|ABV69452.1| RNA polymerase II largest subunit, partial [Endocarpon adscendens]
Length = 999
Score = 105 bits (262), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 222 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 281
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TLTYP VT +N++ L+++V NGP +PGA I E+
Sbjct: 282 DPNLSLDEVGVPRSIARTLTYPETVTRFNISKLKQLVTNGPEAHPGARYIIREN 335
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N++ L+++V NGP +PGA I
Sbjct: 273 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISKLKQLVTNGPEAHPGARYII 332
Query: 74 NED 76
E+
Sbjct: 333 REN 335
>gi|38091164|emb|CAE46436.1| RNA polymerase II largest subunit [Haynesina germanica]
Length = 414
Score = 105 bits (262), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 107/425 (25%), Positives = 174/425 (40%), Gaps = 95/425 (22%)
Query: 183 KCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYV 242
+C GH GHIEL P + F +L+ C+ C ++ + F N +K
Sbjct: 1 ECPGHFGHIELARPCYHVGFLSITLRVLRCVCYHCSRLLCADQNSDAFKNALK------- 53
Query: 243 TQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQ 302
EN R ++V L + + G K+ D D + +E ++
Sbjct: 54 ------------NENPRERLVEIVHLCEK--KKYCGSGDKVDD--DGEDKQEKVNSGCGN 97
Query: 303 VLSRHVKRKCIFCATPIN-AISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQ 361
+ ++ K T + I + +R D + Q
Sbjct: 98 MQPKYRK------GTGVKIEIEFPER-----------------DGGSGEDRKQ------- 127
Query: 362 GYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLS-M 420
Y+ A V FK++ + C + DT + D + I+ L V P +RP M
Sbjct: 128 -YLSALRVHEIFKRISEKD-----CRVLGFDT--KYSPPDWLLIQVLPVSPPAVRPFVLM 179
Query: 421 EQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSW 480
+ M P + I+ + +LK + +G+ L ++
Sbjct: 180 DGMRPSQDDLTHKVYDIMKTNNALKR---------------QEARGVPEHVLEELVE--- 221
Query: 481 HELQYNVDLLMDAKLNINKTTGAHQ--------IDGLKQMLDGKTGMIRQNMMGKRVNFA 532
LQ++V ++D N+ TG Q I GL++ L GK G +R N+MGKR +F+
Sbjct: 222 -LLQFHVTTMID-----NEVTGQPQAKQESGKPIKGLRERLVGKAGRVRGNLMGKRCDFS 275
Query: 533 GRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
R+VI DP L+ID +GVP A LTYP VT +N+ ++++V NGPN +PGA I +
Sbjct: 276 ARTVIGGDPNLSIDEVGVPRSIALNLTYPERVTKFNLHRMKQLVENGPNEHPGAKTIIRD 335
Query: 593 DGSVV 597
DG +
Sbjct: 336 DGKQI 340
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 43/67 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI DP L+ID +GVP A LTYP VT +N+ ++++V NGPN +PGA I
Sbjct: 274 FSARTVIGGDPNLSIDEVGVPRSIALNLTYPERVTKFNLHRMKQLVENGPNEHPGAKTII 333
Query: 74 NEDGSVV 80
+DG +
Sbjct: 334 RDDGKQI 340
>gi|320581578|gb|EFW95798.1| DNA-directed RNA polymerase III subunit, putative [Ogataea
parapolymorpha DL-1]
Length = 1469
Score = 105 bits (262), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 93/187 (49%), Gaps = 20/187 (10%)
Query: 446 SVIMAMKNKEQSDLLSEAL-----------KGIRGDTLNNKLQNSWHELQYNVDLLMD-- 492
SV+M N D L+ L GI N L W LQ V + ++
Sbjct: 270 SVVMTDTNTSNEDDLTVKLTEIVWTSSMIRAGIEKGISINSLMEQWDYLQLAVAMYINSD 329
Query: 493 -----AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDS 547
A T A I GL Q L GK G R N+ GKRV+F+GR+VI+PDP L ID
Sbjct: 330 SASPSALSGGTSTKSAKPIRGLCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDE 389
Query: 548 IGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQR 607
+ VP AK LTYP VT +N L+ ++INGP+V+PGAN + + V R + + R
Sbjct: 390 VAVPDRVAKVLTYPERVTRYNKAKLQALIINGPDVHPGANYLVKKHEDVKR--NLRYGDR 447
Query: 608 ESLAKRL 614
LAK+L
Sbjct: 448 NKLAKQL 454
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP AK LTYP VT +N L+ ++INGP+V+PGAN +
Sbjct: 373 FSGRTVISPDPNLRIDEVAVPDRVAKVLTYPERVTRYNKAKLQALIINGPDVHPGANYLV 432
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ V R + + R LAK+L
Sbjct: 433 KKHEDVKR--NLRYGDRNKLAKQL 454
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 155 IPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSC 214
+ G D MG IS + C TC N C GH GHI+L +PV + +F+ + +L+ C
Sbjct: 49 VANGALDTKMG-ISSKSGECATCHGNLNTCHGHFGHIKLALPVFHVGYFKSIIQVLQTIC 107
Query: 215 FLCHKINIPATSQLLFINQIK 235
C + + S+ F+N ++
Sbjct: 108 KTCSAVLLDEASKRQFLNDLR 128
>gi|119514090|gb|ABL75818.1| RNA polymerase II largest subunit [Siphula ceratites]
Length = 353
Score = 105 bits (262), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 76/126 (60%), Gaps = 3/126 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V LMD A L I ++ L GK G +R N+MGKRV+F+ R+VIT
Sbjct: 212 LQYHVATLMDNDIAGLPQAMQKSGRPIKSIRSRLKGKEGRLRGNLMGKRVDFSARTVITG 271
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
DP L++D +GVP A+TLTYP VTP+N+ L ++V NGPN +PGA + + G + +
Sbjct: 272 DPNLSLDEVGVPRSIARTLTYPETVTPYNIHKLHQLVRNGPNEHPGAKYVIRDTGDRIDL 331
Query: 600 SSSQAV 605
+ V
Sbjct: 332 RHHKRV 337
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 48/75 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N+ L ++V NGPN +PGA +
Sbjct: 263 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIHKLHQLVRNGPNEHPGAKYVI 322
Query: 74 NEDGSVVRISSSQAV 88
+ G + + + V
Sbjct: 323 RDTGDRIDLRHHKRV 337
>gi|157741600|gb|ABV69505.1| RNA polymerase II largest subunit, partial [Verrucaria nigrescens]
Length = 999
Score = 105 bits (262), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 222 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 281
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TLTYP VT +N++ L+++V NGP +PGA I E+
Sbjct: 282 DPNLSLDEVGVPRSIARTLTYPETVTRFNISKLKQLVTNGPEAHPGARYIIREN 335
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N++ L+++V NGP +PGA I
Sbjct: 273 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISKLKQLVTNGPEAHPGARYII 332
Query: 74 NED 76
E+
Sbjct: 333 REN 335
>gi|157741514|gb|ABV69462.1| RNA polymerase II largest subunit, partial [Verrucaria chiloensis]
Length = 999
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 73/113 (64%), Gaps = 3/113 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 222 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 281
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
DP L++D +GVP A+TLTYP VT +N++ L++ V NGP ++PGA I E
Sbjct: 282 DPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKQFVTNGPEMHPGARYIIRE 334
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 43/62 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N++ L++ V NGP ++PGA I
Sbjct: 273 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKQFVTNGPEMHPGARYII 332
Query: 74 NE 75
E
Sbjct: 333 RE 334
>gi|157741578|gb|ABV69494.1| RNA polymerase II largest subunit, partial [Placopyrenium
fuscellum]
Length = 980
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 212 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 271
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TLTYP VT +N+ L+++V NGP ++PGA I E+
Sbjct: 272 DPNLSLDEVGVPRSIARTLTYPETVTRFNIERLKQLVTNGPQMHPGARYIIREN 325
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N+ L+++V NGP ++PGA I
Sbjct: 263 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNIERLKQLVTNGPQMHPGARYII 322
Query: 74 NED 76
E+
Sbjct: 323 REN 325
>gi|91092426|ref|XP_968165.1| PREDICTED: similar to AGAP004703-PA [Tribolium castaneum]
gi|270004743|gb|EFA01191.1| hypothetical protein TcasGA2_TC010518 [Tribolium castaneum]
Length = 1390
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 59/147 (40%), Positives = 85/147 (57%), Gaps = 12/147 (8%)
Query: 474 NKLQNSWHELQYNVDLLMDAKLN------INKTTGAHQIDGLKQMLDGKTGMIRQNMMGK 527
N Q W LQ L ++++L+ + K G GL Q L GK G R N+ GK
Sbjct: 314 NMYQEGWDFLQLQTALYINSELSGIPLAMMPKKPGR----GLVQRLKGKQGRFRGNLSGK 369
Query: 528 RVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGAN 587
RV+F+ R+VI+PDP L ID +GVPL AK LT+P V N+ ++R++VINGP+ +PGAN
Sbjct: 370 RVDFSSRTVISPDPNLQIDQVGVPLHIAKILTFPERVIHANIDVMRQLVINGPDKWPGAN 429
Query: 588 MIQNEDGSVVRISSSQAVQRESLAKRL 614
+Q + + + + RE LA+ L
Sbjct: 430 YVQQKGSAFKKF--LKYGNREKLAQEL 454
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 54/84 (64%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID +GVPL AK LT+P V N+ ++R++VINGP+ +PGAN +Q
Sbjct: 373 FSSRTVISPDPNLQIDQVGVPLHIAKILTFPERVIHANIDVMRQLVINGPDKWPGANYVQ 432
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ + + + RE LA+ L
Sbjct: 433 QKGSAFKKF--LKYGNREKLAQEL 454
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 155 IPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSC 214
IP G+ D +G S+ PC TCG N C GH G+I+L +PV + +FR + +L+ C
Sbjct: 51 IPYGVLDKRLGTNSKE-SPCQTCGKNINSCVGHFGYIDLELPVYHVGYFRSIISILQTIC 109
Query: 215 FLCHKI 220
C ++
Sbjct: 110 KNCARV 115
>gi|410670214|ref|YP_006922585.1| DNA-directed RNA polymerase subunit alpha [Methanolobus
psychrophilus R15]
gi|409169342|gb|AFV23217.1| DNA-directed RNA polymerase subunit alpha [Methanolobus
psychrophilus R15]
Length = 880
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 85/144 (59%), Gaps = 6/144 (4%)
Query: 476 LQNSWHELQYNVDLLMDAKLNI---NKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFA 532
+++ W LQY+V D +++ + + L Q L GK G R ++ GKRVNF+
Sbjct: 262 IEDLWELLQYHVTTFFDNEVSGVPPARHRSGRPLKTLTQRLKGKEGRFRGSLSGKRVNFS 321
Query: 533 GRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
R+V++P+P L+I+ +GVP E A +T P VT N+ LLR V+ G V+PGAN + E
Sbjct: 322 ARTVVSPEPNLSINEVGVPFEIAHQMTIPERVTTRNIDLLRMYVLRGSEVHPGANYVIRE 381
Query: 593 DGSVVRISSSQAVQRESLAKRLIT 616
DG +R+S + +E LA+++ T
Sbjct: 382 DGRRIRVSE---INKEELAEKIQT 402
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 55/86 (63%), Gaps = 3/86 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+V++P+P L+I+ +GVP E A +T P VT N+ LLR V+ G V+PGAN +
Sbjct: 320 FSARTVVSPEPNLSINEVGVPFEIAHQMTIPERVTTRNIDLLRMYVLRGSEVHPGANYVI 379
Query: 74 NEDGSVVRISSSQAVQRESLAKRLIT 99
EDG +R+S + +E LA+++ T
Sbjct: 380 REDGRRIRVSE---INKEELAEKIQT 402
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
+K + +EV+++SV + + T++ G+ I GL DL +G I + G C TCG+ +
Sbjct: 14 IKFGLLSPREVRKMSVTSIVTADTYDDDGYPIDMGLMDLRLGVI-DPGLKCKTCGSRAGE 72
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
C GH GHIEL PVI+ F + ++ L+ C C ++ + A + F+ Q++
Sbjct: 73 CPGHFGHIELVAPVIHVGFNKTIRKALRSICHNCSRLLLTADQKRNFLAQLE 124
>gi|206601338|gb|ACI16388.1| RNA polymerase II largest subunit [Polyblastia hyperborea]
Length = 359
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 211 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 270
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TLTYP VTP+N++ L+ +V GP+ +PGA I E+
Sbjct: 271 DPNLSLDEVGVPRSIARTLTYPETVTPFNISRLKYLVTRGPDNHPGARYIIREN 324
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N++ L+ +V GP+ +PGA I
Sbjct: 262 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPFNISRLKYLVTRGPDNHPGARYII 321
Query: 74 NED 76
E+
Sbjct: 322 REN 324
>gi|157741590|gb|ABV69500.1| RNA polymerase II largest subunit, partial [Verrucaria macrostoma]
Length = 358
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 73/114 (64%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 213 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 272
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TLTYP VT +N++ L++ V NGP +PGA I E+
Sbjct: 273 DPNLSLDEVGVPRSIARTLTYPETVTRFNISKLKQFVTNGPEAHPGARYIIREN 326
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N++ L++ V NGP +PGA I
Sbjct: 264 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISKLKQFVTNGPEAHPGARYII 323
Query: 74 NED 76
E+
Sbjct: 324 REN 326
>gi|12642610|gb|AAK00309.1|AF315819_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Botryocladia
uvarioides]
Length = 1712
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 82/134 (61%), Gaps = 4/134 (2%)
Query: 471 TLNNKLQNSWHELQYNVDLLMDAKL-NINKTT---GAHQIDGLKQMLDGKTGMIRQNMMG 526
T+ + L+ +QY+V M+ ++ +++ T G+ I + Q GK G +R N+MG
Sbjct: 192 TVAHLLREQLDLVQYHVATYMNNEIPGVSQATVRGGSRAIKSIGQRFKGKEGRVRGNLMG 251
Query: 527 KRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGA 586
KRV+F+ R+VITPDP L + +GVP AK LT+P VT +N +RK+V NGP YPGA
Sbjct: 252 KRVDFSARTVITPDPNLLLHEVGVPYSIAKNLTFPETVTSYNYAEMRKLVENGPTEYPGA 311
Query: 587 NMIQNEDGSVVRIS 600
I+ +DG V +S
Sbjct: 312 KYIERDDGQKVNLS 325
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 45/70 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L + +GVP AK LT+P VT +N +RK+V NGP YPGA I+
Sbjct: 256 FSARTVITPDPNLLLHEVGVPYSIAKNLTFPETVTSYNYAEMRKLVENGPTEYPGAKYIE 315
Query: 74 NEDGSVVRIS 83
+DG V +S
Sbjct: 316 RDDGQKVNLS 325
Score = 42.7 bits (99), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIP-ATSQLLF 230
C GH GHIEL P+ N F + +L+ C C KI P AT Q L
Sbjct: 1 CPGHFGHIELAKPMYNIGFIKTTLSVLRCVCHFCSKILCPDATVQSLL 48
>gi|448115320|ref|XP_004202788.1| Piso0_001648 [Millerozyma farinosa CBS 7064]
gi|359383656|emb|CCE79572.1| Piso0_001648 [Millerozyma farinosa CBS 7064]
Length = 1454
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 57/134 (42%), Positives = 79/134 (58%), Gaps = 10/134 (7%)
Query: 468 RGDTLNNKLQNSWHELQYNVDLLMDAKL-------NINKTTGAHQIDGLKQMLDGKTGMI 520
+G T+NN L W LQ +V + +++ + + A I G Q L GK G
Sbjct: 302 KGITINN-LMEQWDYLQLSVAMYINSDAANSAFLPSSGGSKSAKPIRGFCQRLKGKQGRF 360
Query: 521 RQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGP 580
R N+ GKRV+F+GR+V++PDP L ID + VP AK LTYP T +N L+++++NGP
Sbjct: 361 RGNLSGKRVDFSGRTVVSPDPNLRIDEVAVPDRVAKVLTYPEMCTRYNRKKLQRLILNGP 420
Query: 581 NVYPGAN--MIQNE 592
N YPGAN M QNE
Sbjct: 421 NTYPGANYLMKQNE 434
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGAN--M 71
F R+V++PDP L ID + VP AK LTYP T +N L+++++NGPN YPGAN M
Sbjct: 371 FSGRTVVSPDPNLRIDEVAVPDRVAKVLTYPEMCTRYNRKKLQRLILNGPNTYPGANYLM 430
Query: 72 IQNE 75
QNE
Sbjct: 431 KQNE 434
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 158 GLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLC 217
G D MG IS C+TC N C GH GHI L +PV + +F+++ +L+ C C
Sbjct: 52 GALDTRMG-ISSNSSECSTCHGNLASCHGHFGHIRLALPVFHVGYFKNIMSVLQSICKNC 110
Query: 218 HKINIPATSQLLFINQIK 235
I + T++ F+N+++
Sbjct: 111 GAILLDETTRRSFLNELR 128
>gi|157741518|gb|ABV69464.1| RNA polymerase II largest subunit, partial [Placidium lacinulatum]
Length = 989
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 73/113 (64%), Gaps = 3/113 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 222 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 281
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
DP L++D +GVP A+TLTYP VT +N++ L++ V NGP ++PGA I E
Sbjct: 282 DPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKQFVTNGPEMHPGARYIIRE 334
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 43/62 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N++ L++ V NGP ++PGA I
Sbjct: 273 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKQFVTNGPEMHPGARYII 332
Query: 74 NE 75
E
Sbjct: 333 RE 334
>gi|321468698|gb|EFX79682.1| hypothetical protein DAPPUDRAFT_52186 [Daphnia pulex]
Length = 1047
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 113/435 (25%), Positives = 175/435 (40%), Gaps = 127/435 (29%)
Query: 157 GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFL 216
GG+ D G ++ R C TC N +C GH GHI+L PV + FF +L+ C+
Sbjct: 52 GGIMDPRQG-VTNRSARCQTCDGNMNECPGHFGHIDLAKPVFHVGFFEKTIEILRCVCYY 110
Query: 217 CHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSI 276
C K+ L+ N KL +E E+ P + + LV
Sbjct: 111 CSKL-------LVSPNNPKL------------QEIFLKSED---QPGKRMALVHE----- 143
Query: 277 LAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKID 336
L G IC+ D G +E + + + H C +IS +Q +II +K
Sbjct: 144 LCKGKNICEGGDQIGEDEP----ITEDMVGHGG-----CGRSQPSISNRQLEIIAKWK-- 192
Query: 337 KDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKE 396
NLD I+ ++ + A V A FK++ E C I +D
Sbjct: 193 --NLD-------------IVSGAKKLVLTAEHVLAIFKRISDEE-----CAILGMD---- 228
Query: 397 LIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSC--GSLKSVIMAMKNK 454
P RP + ++ SC + + N
Sbjct: 229 ---------------PKYARP-----------------EWMIISCLPVPPPNTRPPVMNG 256
Query: 455 EQSDLLSEALKGIRGDTLNNKLQ-------------NSWHELQYNVDLLMDAKLNINKTT 501
+ D L+ L I +NN+LQ N+ LQ+N+ +L ++
Sbjct: 257 SEHDYLTRKLVDIV--KVNNELQRNEQSGAEDPIIANNIKMLQFNIAMLSNS-------- 306
Query: 502 GAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYP 561
+K L+GK G IR N+MGK V+F+ R+VITPDP L ID +GVP A+ +T+P
Sbjct: 307 -------IKNRLEGKKGRIRGNLMGKLVDFSARTVITPDPNLRIDQVGVPRIIAQNMTFP 359
Query: 562 VPVTPWNVTLLRKMV 576
VT +N+ ++++V
Sbjct: 360 EIVTSFNIEKMQELV 374
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 32/46 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMV 59
F R+VITPDP L ID +GVP A+ +T+P VT +N+ ++++V
Sbjct: 329 FSARTVITPDPNLRIDQVGVPRIIAQNMTFPEIVTSFNIEKMQELV 374
>gi|157741530|gb|ABV69470.1| RNA polymerase II largest subunit, partial [Placopyrenium bucekii]
Length = 989
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 222 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 281
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TLTYP VT +N+ L+++V NGP ++PGA I E+
Sbjct: 282 DPNLSLDEVGVPRSIARTLTYPETVTRFNIERLKQLVTNGPQMHPGARYIIREN 335
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N+ L+++V NGP ++PGA I
Sbjct: 273 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNIERLKQLVTNGPQMHPGARYII 332
Query: 74 NED 76
E+
Sbjct: 333 REN 335
>gi|157741484|gb|ABV69447.1| RNA polymerase II largest subunit, partial [Catapyrenium daedaleum]
Length = 999
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 73/118 (61%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 222 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 281
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L++D +GVP A+TLTYP VT +N L++ V NGP+ +PGA I E G +
Sbjct: 282 DPNLSLDEVGVPRSIARTLTYPETVTQFNKERLKQFVTNGPDTHPGARYIIREQGERI 339
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 43/67 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N L++ V NGP+ +PGA I
Sbjct: 273 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTQFNKERLKQFVTNGPDTHPGARYII 332
Query: 74 NEDGSVV 80
E G +
Sbjct: 333 REQGERI 339
>gi|119494984|ref|XP_001264289.1| DNA-dependent RNA polymerase II largest subunit, putative
[Neosartorya fischeri NRRL 181]
gi|119412451|gb|EAW22392.1| DNA-dependent RNA polymerase II largest subunit, putative
[Neosartorya fischeri NRRL 181]
Length = 1750
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 82/133 (61%), Gaps = 7/133 (5%)
Query: 483 LQYNVDLLMDAKLNINKTTGAHQ-----IDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVI 537
LQY+V MD +I A Q + ++ L GK G +RQN+MGKRV+F+ R+VI
Sbjct: 311 LQYHVATYMDN--DIAGQPKAMQKSNRPVKAIRSRLKGKEGRLRQNLMGKRVDFSARTVI 368
Query: 538 TPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
T DP L++D +GVP A+TLTYP VTP+N+ L+++V NGPN +PGA I ++G +
Sbjct: 369 TGDPNLSLDEVGVPRSIARTLTYPEVVTPYNIEKLQQLVANGPNEHPGARYIVRDNGERI 428
Query: 598 RISSSQAVQRESL 610
+ ++ + L
Sbjct: 429 DLRHARRAGGQQL 441
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 52/80 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N+ L+++V NGPN +PGA I
Sbjct: 362 FSARTVITGDPNLSLDEVGVPRSIARTLTYPEVVTPYNIEKLQQLVANGPNEHPGARYIV 421
Query: 74 NEDGSVVRISSSQAVQRESL 93
++G + + ++ + L
Sbjct: 422 RDNGERIDLRHARRAGGQQL 441
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 3/116 (2%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLG-HTIPGGLYDLAMGPISERGDPCTTCGNNYT 182
++ ++ +E+K++SVV V P T + GL D +G I + + C TC
Sbjct: 19 IQFGLFSPEEIKRMSVVHVEYPETMDEQRMRPRTKGLNDPRLGTIDRQWN-CETCEEGQK 77
Query: 183 KCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLD 238
+C GH GHIEL PV + F V+ LL+ C C KI TS F+ +++ D
Sbjct: 78 ECPGHFGHIELATPVFHIGFLTKVKKLLETVCHNCGKIKA-DTSDSKFLEALRMRD 132
>gi|67517057|ref|XP_658413.1| hypothetical protein AN0809.2 [Aspergillus nidulans FGSC A4]
gi|40746483|gb|EAA65639.1| hypothetical protein AN0809.2 [Aspergillus nidulans FGSC A4]
gi|259488909|tpe|CBF88741.1| TPA: DNA-directed RNA polymerase Fragment (EC 2.7.7.6)
[Source:UniProtKB/TrEMBL;Acc:Q873Q6] [Aspergillus
nidulans FGSC A4]
Length = 1745
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 83/133 (62%), Gaps = 7/133 (5%)
Query: 483 LQYNVDLLMDAKLNINKTTGAHQ-----IDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVI 537
LQY++ MD +I A Q + ++ L GK G +RQN+MGKRV+F+ R+VI
Sbjct: 310 LQYHIATYMDN--DIAGQPKAMQKSNRPVKAIRSRLKGKEGRLRQNLMGKRVDFSARTVI 367
Query: 538 TPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
T DP L++D +GVP A+TLTYP VTP+N+ L+++V+NGPN +PGA I ++G +
Sbjct: 368 TGDPNLSLDEVGVPKSIARTLTYPEVVTPYNIEKLQQLVMNGPNEHPGARYIVRDNGERI 427
Query: 598 RISSSQAVQRESL 610
+ ++ + L
Sbjct: 428 DLRHAKRAGGQQL 440
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 53/80 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N+ L+++V+NGPN +PGA I
Sbjct: 361 FSARTVITGDPNLSLDEVGVPKSIARTLTYPEVVTPYNIEKLQQLVMNGPNEHPGARYIV 420
Query: 74 NEDGSVVRISSSQAVQRESL 93
++G + + ++ + L
Sbjct: 421 RDNGERIDLRHAKRAGGQQL 440
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 3/116 (2%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTI-PGGLYDLAMGPISERGDPCTTCGNNYT 182
++ ++ +E+K++SVV V P T + GL D +G I + + C TC
Sbjct: 19 IQFGLFSPEEIKRMSVVHVEYPETMDDQRQRPRTKGLNDPRLGTIDRQWN-CETCEEGQK 77
Query: 183 KCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLD 238
+C GH GHIEL PV + F ++ LL+ C C KI TS F++ +++ D
Sbjct: 78 ECPGHFGHIELATPVFHIGFLTKIKKLLETVCHNCGKIKA-NTSDPKFLDALRIRD 132
>gi|363753734|ref|XP_003647083.1| hypothetical protein Ecym_5525 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890719|gb|AET40266.1| hypothetical protein Ecym_5525 [Eremothecium cymbalariae
DBVPG#7215]
Length = 1459
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 112/219 (51%), Gaps = 28/219 (12%)
Query: 386 CLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLK 445
C + +D+T + + R L PP +RP M Q P + + + L
Sbjct: 239 CELLGIDSTVKAGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVK--------LT 290
Query: 446 SVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNIN------- 498
++ S L+ L+ +G ++NN ++ W LQ V + +++ ++N
Sbjct: 291 EIVWT------SSLIKAGLE--KGISINNMMEQ-WDYLQMAVAMYINSD-SVNPALMPGG 340
Query: 499 -KTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKT 557
I G Q L GK G R N+ GKRV+F+GR+VI+PDP L+ID + VP AK
Sbjct: 341 TGGGKTKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKV 400
Query: 558 LTYPVPVTPWNVTLLRKMVINGPNVYPGANMI--QNEDG 594
LTYP VT +N L++++INGPNV+PGAN + +NED
Sbjct: 401 LTYPERVTRYNKHKLQQLIINGPNVHPGANYMLKKNEDA 439
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 47/66 (71%), Gaps = 2/66 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI- 72
F R+VI+PDP L+ID + VP AK LTYP VT +N L++++INGPNV+PGAN +
Sbjct: 374 FSGRTVISPDPNLSIDEVAVPDRVAKVLTYPERVTRYNKHKLQQLIINGPNVHPGANYML 433
Query: 73 -QNEDG 77
+NED
Sbjct: 434 KKNEDA 439
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 66/132 (50%), Gaps = 9/132 (6%)
Query: 109 MKEKIITRQEVVPEILKLKYYTD---QEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLA 163
MKE ++ +V P+ +K +++ ++ S V++F+ F+ P GG D
Sbjct: 1 MKEVVV---DVAPKKIKGLHFSALSASDIVAQSEVEIFTRDLFDLENGRAPKQGGALDSK 57
Query: 164 MGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIP 223
MG S + + C+TC N C GH GHI+L +PV + +F+ +L+ C C I +
Sbjct: 58 MGVSSSQAE-CSTCHGNLASCHGHFGHIKLALPVFHIGYFKATIQILQSICKNCAAILLS 116
Query: 224 ATSQLLFINQIK 235
+ F+ +++
Sbjct: 117 EEEKRQFLAELR 128
>gi|448112703|ref|XP_004202165.1| Piso0_001648 [Millerozyma farinosa CBS 7064]
gi|359465154|emb|CCE88859.1| Piso0_001648 [Millerozyma farinosa CBS 7064]
Length = 1454
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 57/134 (42%), Positives = 79/134 (58%), Gaps = 10/134 (7%)
Query: 468 RGDTLNNKLQNSWHELQYNVDLLMDAKL-------NINKTTGAHQIDGLKQMLDGKTGMI 520
+G T+NN L W LQ +V + +++ + + A I G Q L GK G
Sbjct: 302 KGITINN-LMEQWDYLQLSVAMYINSDAANSAFLPSSGGSKSAKPIRGFCQRLKGKQGRF 360
Query: 521 RQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGP 580
R N+ GKRV+F+GR+V++PDP L ID + VP AK LTYP T +N L+++++NGP
Sbjct: 361 RGNLSGKRVDFSGRTVVSPDPNLRIDEVAVPDRVAKVLTYPEMCTRYNRKKLQRLILNGP 420
Query: 581 NVYPGAN--MIQNE 592
N YPGAN M QNE
Sbjct: 421 NTYPGANYLMKQNE 434
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGAN--M 71
F R+V++PDP L ID + VP AK LTYP T +N L+++++NGPN YPGAN M
Sbjct: 371 FSGRTVVSPDPNLRIDEVAVPDRVAKVLTYPEMCTRYNRKKLQRLILNGPNTYPGANYLM 430
Query: 72 IQNE 75
QNE
Sbjct: 431 KQNE 434
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 158 GLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLC 217
G D MG IS C+TC N C GH GHI L +PV + +F+++ +L+ C C
Sbjct: 52 GALDTRMG-ISSNSSECSTCHGNLASCHGHFGHIRLALPVFHVGYFKNIMSVLQSICKNC 110
Query: 218 HKINIPATSQLLFINQIK 235
I + T++ F+N+++
Sbjct: 111 GAILLDETTRRSFLNELR 128
>gi|330791878|ref|XP_003284018.1| RNA polymerase III, largest subunit [Dictyostelium purpureum]
gi|325086064|gb|EGC39460.1| RNA polymerase III, largest subunit [Dictyostelium purpureum]
Length = 1396
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 49/89 (55%), Positives = 64/89 (71%)
Query: 506 IDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVT 565
+ GL Q L GKTG R N+ GKRV+F+GR+VI+PDP LNID + VP A T+TYP V+
Sbjct: 327 VRGLSQRLKGKTGRFRGNLSGKRVDFSGRTVISPDPNLNIDEVAVPQLIALTMTYPERVS 386
Query: 566 PWNVTLLRKMVINGPNVYPGANMIQNEDG 594
+N+ L+K VINGP+ +PGAN I +DG
Sbjct: 387 DYNIERLQKYVINGPDRHPGANYIIYQDG 415
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 45/64 (70%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP LNID + VP A T+TYP V+ +N+ L+K VINGP+ +PGAN I
Sbjct: 352 FSGRTVISPDPNLNIDEVAVPQLIALTMTYPERVSDYNIERLQKYVINGPDRHPGANYII 411
Query: 74 NEDG 77
+DG
Sbjct: 412 YQDG 415
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 60/107 (56%), Gaps = 2/107 (1%)
Query: 130 TDQEVKQLSVVKVFSPITFNSLGHT-IPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
+++++ +LS V++ + F+ L P G+ D +G S++ CTTCG + C GH
Sbjct: 19 SEEDIVRLSHVQLVNRELFDLLKRKPQPYGVLDNKLG-TSDKQQNCTTCGLSIVDCVGHF 77
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
G+I+L +PV + + +++ +L++ C C I + + ++ +++
Sbjct: 78 GYIKLQLPVFHIGYLKNIMNILQMICKNCSSILLDEEKKSTYLRKMR 124
>gi|157741532|gb|ABV69471.1| RNA polymerase II largest subunit, partial [Placopyrenium bucekii]
Length = 999
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 222 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 281
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TLTYP VT +N+ L+++V NGP ++PGA I E+
Sbjct: 282 DPNLSLDEVGVPRSIARTLTYPETVTRFNIERLKQLVTNGPQMHPGARYIIREN 335
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N+ L+++V NGP ++PGA I
Sbjct: 273 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNIERLKQLVTNGPQMHPGARYII 332
Query: 74 NED 76
E+
Sbjct: 333 REN 335
>gi|70996164|ref|XP_752837.1| DNA-dependent RNA polymerase II largest subunit [Aspergillus
fumigatus Af293]
gi|66850472|gb|EAL90799.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus fumigatus Af293]
gi|159131590|gb|EDP56703.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus fumigatus A1163]
Length = 1750
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 82/133 (61%), Gaps = 7/133 (5%)
Query: 483 LQYNVDLLMDAKLNINKTTGAHQ-----IDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVI 537
LQY+V MD +I A Q + ++ L GK G +RQN+MGKRV+F+ R+VI
Sbjct: 311 LQYHVATYMDN--DIAGQPKAMQKSNRPVKAIRSRLKGKEGRLRQNLMGKRVDFSARTVI 368
Query: 538 TPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
T DP L++D +GVP A+TLTYP VTP+N+ L+++V NGPN +PGA I ++G +
Sbjct: 369 TGDPNLSLDEVGVPRSIARTLTYPEVVTPYNIEKLQQLVANGPNEHPGARYIVRDNGERI 428
Query: 598 RISSSQAVQRESL 610
+ ++ + L
Sbjct: 429 DLRHARRAGGQQL 441
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 52/80 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N+ L+++V NGPN +PGA I
Sbjct: 362 FSARTVITGDPNLSLDEVGVPRSIARTLTYPEVVTPYNIEKLQQLVANGPNEHPGARYIV 421
Query: 74 NEDGSVVRISSSQAVQRESL 93
++G + + ++ + L
Sbjct: 422 RDNGERIDLRHARRAGGQQL 441
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 3/116 (2%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLG-HTIPGGLYDLAMGPISERGDPCTTCGNNYT 182
++ ++ +E+K++SVV V P T + GL D +G I + + C TC
Sbjct: 19 IQFGLFSPEEIKRMSVVHVEYPETMDEQRMRPRTKGLNDPRLGTIDRQWN-CETCEEGQK 77
Query: 183 KCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLD 238
+C GH GHIEL PV + F V+ LL+ C C KI TS F+ +++ D
Sbjct: 78 ECPGHFGHIELATPVFHIGFLTKVKKLLETVCHNCGKIKA-DTSDSKFLEALRMRD 132
>gi|281204162|gb|EFA78358.1| RNA polymerase III [Polysphondylium pallidum PN500]
Length = 1393
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 69/109 (63%), Gaps = 3/109 (2%)
Query: 506 IDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVT 565
I GL Q L GKTG R N+ GKRV+F+GR+VI+PDP LNID + VP A T+TYP V
Sbjct: 333 IRGLSQRLKGKTGRFRGNLSGKRVDFSGRTVISPDPNLNIDEVAVPHLIALTMTYPERVA 392
Query: 566 PWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRL 614
+N+T L+K VINGP+ +PGAN I DG + RE LA L
Sbjct: 393 EYNLTRLQKYVINGPDKHPGANYIIYPDGEKKWLKYG---NREKLAAEL 438
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 57/101 (56%), Gaps = 4/101 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP LNID + VP A T+TYP V +N+T L+K VINGP+ +PGAN I
Sbjct: 358 FSGRTVISPDPNLNIDEVAVPHLIALTMTYPERVAEYNLTRLQKYVINGPDKHPGANYII 417
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKII 114
DG + RE LA L P D R I+ ++
Sbjct: 418 YPDGEKKWLKYG---NREKLAAEL-KPGDIVERHIIDGDVV 454
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 158 GLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLC 217
G D +G S++ C TCG + C GH G+I+L +PV + +F+++ +L++ C C
Sbjct: 53 GCLDNRLG-TSDKSIICKTCGLSIVDCVGHFGYIKLQLPVFHIGYFKNITNILQMICKGC 111
Query: 218 HKINIPATSQLLFINQIK 235
I + + F+ +I+
Sbjct: 112 SAILLDDEKKTTFLRKIR 129
>gi|380025198|ref|XP_003696364.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit RPC1-like, partial [Apis florea]
Length = 1994
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/117 (47%), Positives = 76/117 (64%), Gaps = 10/117 (8%)
Query: 480 WHELQYNVDLLMDAK-----LNIN-KTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
W LQ + L ++++ LN+ K +G GL Q L GK G R N+ GKRV+F+
Sbjct: 938 WEFLQLHCALYINSEMSGIPLNMQPKKSGR----GLVQRLKGKQGRFRGNLSGKRVDFSS 993
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 590
R+VI+PDP L I+ +GVP+ AK LTYP V P N+ L+RK+V NGP+++PGAN IQ
Sbjct: 994 RTVISPDPNLRIEQVGVPIHVAKILTYPEKVNPSNIELMRKLVRNGPDIHPGANFIQ 1050
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 45/60 (75%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L I+ +GVP+ AK LTYP V P N+ L+RK+V NGP+++PGAN IQ
Sbjct: 991 FSSRTVISPDPNLRIEQVGVPIHVAKILTYPEKVNPSNIELMRKLVRNGPDIHPGANFIQ 1050
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 153 HT-IPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLK 211
HT +P G+ D MG + + C +CG +C GH G+I+L +PV + +FR + +L+
Sbjct: 676 HTPVPYGVLDRKMGTCNNTTN-CASCGKTLNECIGHFGYIDLELPVFHVGYFRSIIGILQ 734
Query: 212 LSCFLCHKINIPATSQLLFINQIKLLDAGYVTQ 244
C C + + + ++ ++ + GY+T+
Sbjct: 735 TICKNCSHVMLSEIDKKHYLTRVLNPNLGYLTR 767
>gi|448520288|ref|XP_003868270.1| Rpo31 protein [Candida orthopsilosis Co 90-125]
gi|380352609|emb|CCG22836.1| Rpo31 protein [Candida orthopsilosis]
Length = 1443
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 84/249 (33%), Positives = 117/249 (46%), Gaps = 43/249 (17%)
Query: 365 MASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDI-------MFI-RSLVVPPNNLR 416
A ++ DF L T +LF K +IP EL+ D M+I R L PP +R
Sbjct: 215 FAKRIQEDFNPLKT-LNLF-KQIIP---EDCELLGMDASKGGRPEMYIWRYLPAPPVCIR 269
Query: 417 PLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKL 476
P M E I+++ +K+ I +G ++NN L
Sbjct: 270 PSVMMDAQSNEDDLTVKLTEIVWTSSMIKAGIA------------------KGISINN-L 310
Query: 477 QNSWHELQYNVDLLMDAK---------LNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGK 527
W LQ +V + +++ + A I G Q L GK G R N+ GK
Sbjct: 311 MEQWDYLQLSVAMYINSDAANPALMSGGGGGGSKSAKPIRGFCQRLKGKQGRFRGNLSGK 370
Query: 528 RVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGAN 587
RV+F+GR+VI+PDP L ID + VP AK LTYP T +N L+ ++INGP+V+PGAN
Sbjct: 371 RVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQCLIINGPDVHPGAN 430
Query: 588 --MIQNEDG 594
M QNE G
Sbjct: 431 YVMKQNEAG 439
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 44/66 (66%), Gaps = 2/66 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGAN--M 71
F R+VI+PDP L ID + VP AK LTYP T +N L+ ++INGP+V+PGAN M
Sbjct: 374 FSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQCLIINGPDVHPGANYVM 433
Query: 72 IQNEDG 77
QNE G
Sbjct: 434 KQNEAG 439
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 157 GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFL 216
GG D MG IS C TC N C GH GHI L +PV + +F+ V +L+ C
Sbjct: 52 GGALDTRMG-ISSNSSECATCHGNLASCNGHFGHIRLALPVFHVGYFKAVISVLQCVCKN 110
Query: 217 CHKINIPATSQLLFINQIK 235
C I + ++ F+++++
Sbjct: 111 CGAILLEPQAKRQFLSELR 129
>gi|157741602|gb|ABV69506.1| RNA polymerase II largest subunit, partial [Verrucaria polysticta]
Length = 999
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 222 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRVRLKGKEGRLRQNLMGKRVDFSARTVITG 281
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TLTYP VT +N++ L+++V NGP +PGA I E+
Sbjct: 282 DPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKQLVTNGPEAHPGARYIIREN 335
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N++ L+++V NGP +PGA I
Sbjct: 273 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKQLVTNGPEAHPGARYII 332
Query: 74 NED 76
E+
Sbjct: 333 REN 335
>gi|158427122|gb|ABW38176.1| RNA polymerase II largest subunit, partial [Botryosphaeria
dothidea]
Length = 372
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 78/132 (59%), Gaps = 3/132 (2%)
Query: 483 LQYNVDLLMDAKLNIN---KTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQ++V MD L + + ++ L GK G +R N+MGKRV+F+ R+VIT
Sbjct: 233 LQWHVATYMDNDLAGQPQAQQKSGRALKTIRGRLKGKDGRLRGNLMGKRVDFSARTVITG 292
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
DP L++D +GVP A+TLTYP VTP+N+ L ++V NGPN +PGA I +DG+ + +
Sbjct: 293 DPNLDLDEVGVPRSIARTLTYPETVTPYNIAKLHELVKNGPNEHPGAKYIIRDDGTRIDL 352
Query: 600 SSSQAVQRESLA 611
+ LA
Sbjct: 353 RHHKRAGEIQLA 364
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 51/81 (62%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N+ L ++V NGPN +PGA I
Sbjct: 284 FSARTVITGDPNLDLDEVGVPRSIARTLTYPETVTPYNIAKLHELVKNGPNEHPGAKYII 343
Query: 74 NEDGSVVRISSSQAVQRESLA 94
+DG+ + + + LA
Sbjct: 344 RDDGTRIDLRHHKRAGEIQLA 364
Score = 43.5 bits (101), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 183 KCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLD 238
+C GH GHIEL PV + F ++ LL+ C C KI + S+ F + ++L D
Sbjct: 1 ECPGHFGHIELHTPVFHAGFINKIKKLLECVCHNCGKI-LADESEQQFKDALRLRD 55
>gi|120561168|gb|ABM26979.1| RNA polymerase II largest subunit [Nosema empoascae]
Length = 764
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 114/241 (47%), Gaps = 31/241 (12%)
Query: 365 MASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRS-------LVVPPNNLRP 417
M E ++ K + T E ++ + D E + D + R L+VPP +RP
Sbjct: 78 MKGEDNSEGKVILTGERVY-SIFKKISDEDIEYLGFDSQYSRPEWLILTVLLVPPPAVRP 136
Query: 418 -LSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKL 476
+ ME M E I+ S LK L+G G + +
Sbjct: 137 SIVMEGMLRAEDDLTHKLADIIKSNTYLKKY---------------ELEGAPGHIIRDYE 181
Query: 477 QNSWHELQYNVDLLMDAKLNINKTT---GAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
Q LQ+++ L+D L+ + + L GK G +R N+MGKRV+F+
Sbjct: 182 Q----LLQFHIATLIDNDLSGQPQALQKSGRPLKSISARLKGKEGRVRGNLMGKRVDFSA 237
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
RSVIT D ++++ +GVP+E AK T+P +TP+NV L K+V NGPNVYPGAN + D
Sbjct: 238 RSVITADANISLEEVGVPIEVAKIHTFPEKITPFNVQRLEKLVENGPNVYPGANYVIRND 297
Query: 594 G 594
G
Sbjct: 298 G 298
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 45/64 (70%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVIT D ++++ +GVP+E AK T+P +TP+NV L K+V NGPNVYPGAN +
Sbjct: 235 FSARSVITADANISLEEVGVPIEVAKIHTFPEKITPFNVQRLEKLVENGPNVYPGANYVI 294
Query: 74 NEDG 77
DG
Sbjct: 295 RNDG 298
>gi|226876215|gb|ACO89428.1| RNA polymerase II largest subunit, partial [Chaetothyriales sp.
TRN214]
Length = 357
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 74/121 (61%), Gaps = 3/121 (2%)
Query: 480 WHELQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSV 536
W LQY++ MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+V
Sbjct: 209 WDLLQYHIATYMDNDIAGLDRAQHKSGRAIKSIRARLKGKEGRLRQNLMGKRVDFSARTV 268
Query: 537 ITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSV 596
IT DP L++D +GVP A+ LT+P VTP+NV L+ +V NGP +PGA + + G
Sbjct: 269 ITGDPNLSLDEVGVPRSIARNLTFPEKVTPFNVDKLKALVKNGPTEHPGARYVIRDTGER 328
Query: 597 V 597
+
Sbjct: 329 I 329
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 43/67 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+ LT+P VTP+NV L+ +V NGP +PGA +
Sbjct: 263 FSARTVITGDPNLSLDEVGVPRSIARNLTFPEKVTPFNVDKLKALVKNGPTEHPGARYVI 322
Query: 74 NEDGSVV 80
+ G +
Sbjct: 323 RDTGERI 329
>gi|206601359|gb|ACI16398.1| RNA polymerase II largest subunit [Polyblastia bryophila]
Length = 391
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 229 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 288
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TLTYP VTP+N++ L+ +V GP+ +PGA I E+
Sbjct: 289 DPNLSLDEVGVPRSIARTLTYPETVTPFNISRLKYLVTRGPDNHPGARYIIREN 342
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N++ L+ +V GP+ +PGA I
Sbjct: 280 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPFNISRLKYLVTRGPDNHPGARYII 339
Query: 74 NED 76
E+
Sbjct: 340 REN 342
>gi|281203888|gb|EFA78084.1| RNA polymerase II largest subunit [Polysphondylium pallidum PN500]
Length = 2159
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/90 (52%), Positives = 64/90 (71%)
Query: 506 IDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVT 565
+ ++Q L GK G IR N+MGKRV+F+ R+VIT DP L+ID +GVP A LTYP VT
Sbjct: 328 LKSIRQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLSIDQVGVPRSIALNLTYPETVT 387
Query: 566 PWNVTLLRKMVINGPNVYPGANMIQNEDGS 595
P+N+ +R+++ NGPN +PGA I EDG+
Sbjct: 388 PFNIDRMRELIRNGPNEHPGAKYIIREDGT 417
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 45/65 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L+ID +GVP A LTYP VTP+N+ +R+++ NGPN +PGA I
Sbjct: 353 FSARTVITADPNLSIDQVGVPRSIALNLTYPETVTPFNIDRMRELIRNGPNEHPGAKYII 412
Query: 74 NEDGS 78
EDG+
Sbjct: 413 REDGT 417
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHI 191
++++ +SV V P T+ + G GGL D MG I ++ C TC +C GH GHI
Sbjct: 25 EDIRDMSVALVEHPETYEN-GKPKIGGLVDPHMGTI-DKTQKCATCSGTMAECPGHFGHI 82
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKI 220
EL PV + F V +LK C+ C K+
Sbjct: 83 ELAKPVFHIGFINTVLKILKCVCYHCSKL 111
>gi|121701053|ref|XP_001268791.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus clavatus NRRL 1]
gi|119396934|gb|EAW07365.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus clavatus NRRL 1]
Length = 1765
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 82/133 (61%), Gaps = 7/133 (5%)
Query: 483 LQYNVDLLMDAKLNINKTTGAHQ-----IDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVI 537
LQY+V MD +I A Q + ++ L GK G +RQN+MGKRV+F+ R+VI
Sbjct: 313 LQYHVATYMDN--DIAGQPKAMQKSNRPVKAIRSRLKGKEGRLRQNLMGKRVDFSARTVI 370
Query: 538 TPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
T DP L++D +GVP A+TLTYP VTP+N+ L+++V NGPN +PGA I ++G +
Sbjct: 371 TGDPNLSLDEVGVPRSIARTLTYPEVVTPYNIEKLQQLVANGPNEHPGARYIVRDNGERI 430
Query: 598 RISSSQAVQRESL 610
+ ++ + L
Sbjct: 431 DLRHARRAGGQQL 443
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 52/80 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N+ L+++V NGPN +PGA I
Sbjct: 364 FSARTVITGDPNLSLDEVGVPRSIARTLTYPEVVTPYNIEKLQQLVANGPNEHPGARYIV 423
Query: 74 NEDGSVVRISSSQAVQRESL 93
++G + + ++ + L
Sbjct: 424 RDNGERIDLRHARRAGGQQL 443
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 3/117 (2%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLG-HTIPGGLYDLAMGPISERGDPCTTCGNNYT 182
++ ++ +E+K++SVV V P T + GL D +G I + + C TC
Sbjct: 19 IQFGLFSPEEIKRMSVVHVEYPETMDEQRMRPRTKGLNDPRLGTIDRQWN-CETCEEGQK 77
Query: 183 KCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPAT-SQLLFINQIKLLD 238
+C GH GHIEL PV + F V+ LL+ C C KI S F+ +++ D
Sbjct: 78 ECPGHFGHIELATPVFHIGFLTKVKKLLETVCHNCGKIKADTNQSDSKFLEALRMRD 134
>gi|119514064|gb|ABL75805.1| RNA polymerase II largest subunit [Tephromela atra]
Length = 358
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 75/123 (60%), Gaps = 13/123 (10%)
Query: 483 LQYNVDLLMDAKLNINKTTGAHQ--------IDGLKQMLDGKTGMIRQNMMGKRVNFAGR 534
LQ++V MD N G Q + ++ L GK G +R N+MGKRV+F+ R
Sbjct: 212 LQFHVATYMD-----NDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSAR 266
Query: 535 SVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDG 594
+VIT DP L++D +GVP+ A+ LTYP VTP+N+ LRK+VINGPN +PGA I + G
Sbjct: 267 TVITGDPNLSLDEVGVPISIARVLTYPETVTPFNLEYLRKLVINGPNEHPGAKYIIRDSG 326
Query: 595 SVV 597
+
Sbjct: 327 ERI 329
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 47/67 (70%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP+ A+ LTYP VTP+N+ LRK+VINGPN +PGA I
Sbjct: 263 FSARTVITGDPNLSLDEVGVPISIARVLTYPETVTPFNLEYLRKLVINGPNEHPGAKYII 322
Query: 74 NEDGSVV 80
+ G +
Sbjct: 323 RDSGERI 329
>gi|157741566|gb|ABV69488.1| RNA polymerase II largest subunit, partial [Verrucaria caerulea]
Length = 356
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 73/118 (61%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 213 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 272
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L++D +GVP A+TLTYP VT +N L++ V NGP+ +PGA I E G +
Sbjct: 273 DPNLSLDKVGVPRSIARTLTYPETVTRFNKERLKQFVTNGPDNHPGARYIIREQGERI 330
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 43/67 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N L++ V NGP+ +PGA I
Sbjct: 264 FSARTVITGDPNLSLDKVGVPRSIARTLTYPETVTRFNKERLKQFVTNGPDNHPGARYII 323
Query: 74 NEDGSVV 80
E G +
Sbjct: 324 REQGERI 330
>gi|111278799|gb|ABH09097.1| RNA polymerase II largest subunit [Ramichloridium anceps]
Length = 1002
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 75/118 (63%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY++ MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 224 LQYHIATYMDNEIAGLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 283
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L++D +GVP A+TLT+P VTP+N+ L+++V NGP +PGA I + G +
Sbjct: 284 DPNLSLDEVGVPRSIARTLTFPETVTPFNLDKLKRLVANGPTEHPGARYIIRDTGERI 341
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 45/67 (67%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLT+P VTP+N+ L+++V NGP +PGA I
Sbjct: 275 FSARTVITGDPNLSLDEVGVPRSIARTLTFPETVTPFNLDKLKRLVANGPTEHPGARYII 334
Query: 74 NEDGSVV 80
+ G +
Sbjct: 335 RDTGERI 341
>gi|328858469|gb|EGG07581.1| hypothetical protein MELLADRAFT_47986 [Melampsora larici-populina
98AG31]
Length = 1421
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/115 (46%), Positives = 72/115 (62%), Gaps = 1/115 (0%)
Query: 476 LQNSWHELQYNVDLLMDAKL-NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGR 534
+ W LQ +V + ++A+L + GA I G Q L GKTG R N+ GKRV+F+GR
Sbjct: 316 IMEQWEFLQLSVAMYINAELPGVPSQMGAKPIKGFCQRLKGKTGRFRGNLSGKRVDFSGR 375
Query: 535 SVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 589
+VI PDP L+I + VP AK LTYP VT N+ LR+ + NGP+V+PGAN +
Sbjct: 376 TVIGPDPNLSITEVAVPDRMAKVLTYPERVTAHNLDRLRQCIRNGPDVHPGANYL 430
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 39/59 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 72
F R+VI PDP L+I + VP AK LTYP VT N+ LR+ + NGP+V+PGAN +
Sbjct: 372 FSGRTVIGPDPNLSITEVAVPDRMAKVLTYPERVTAHNLDRLRQCIRNGPDVHPGANYL 430
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 8/121 (6%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIP-------GGLYDLAMGPISERGDPC 174
EI+ + Y + S+ P F G P GG+ D +G S++ C
Sbjct: 25 EIVAISEYESTQRDLYSMSGSTDPSGFAIPGAPEPLVKKPAKGGVLDTRLG-TSDKSGTC 83
Query: 175 TTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQI 234
TC C GH +I+L +PV + +FR V +L+ C C ++ + + +++ +
Sbjct: 84 GTCNAKMADCVGHYSYIKLILPVFHIGYFRAVIQMLQDICKTCARVMLSEEDRRVYLQRF 143
Query: 235 K 235
+
Sbjct: 144 R 144
>gi|255717220|ref|XP_002554891.1| KLTH0F16236p [Lachancea thermotolerans]
gi|238936274|emb|CAR24454.1| KLTH0F16236p [Lachancea thermotolerans CBS 6340]
Length = 1460
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 111/220 (50%), Gaps = 24/220 (10%)
Query: 386 CLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLK 445
C + +D+T + + R L PP +RP M Q P + + + L
Sbjct: 239 CELLGIDSTVKSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVK--------LT 290
Query: 446 SVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDA-----KLNINKT 500
++ S L+ L+ +G ++NN ++ W LQ V + +++ + +
Sbjct: 291 EIVWT------SSLIKAGLE--KGISINNMMEQ-WDYLQLAVAMYINSDSVNPAMMPGGS 341
Query: 501 TGAHQ--IDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTL 558
TG I G Q L GK G R N+ GKRV+F+GR+V++PDP L+ID + VP AK L
Sbjct: 342 TGGKTKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVVSPDPNLSIDEVAVPDRVAKVL 401
Query: 559 TYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVR 598
TYP VT +N L+++VINGPN +PGAN + +D R
Sbjct: 402 TYPEMVTRYNKQKLQQLVINGPNEHPGANYLLKKDEEARR 441
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 45/68 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+V++PDP L+ID + VP AK LTYP VT +N L+++VINGPN +PGAN +
Sbjct: 374 FSGRTVVSPDPNLSIDEVAVPDRVAKVLTYPEMVTRYNKQKLQQLVINGPNEHPGANYLL 433
Query: 74 NEDGSVVR 81
+D R
Sbjct: 434 KKDEEARR 441
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 157 GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFL 216
GG D MG S + + C+TC N C GH GHI+L +PV + +F+ +L+ C
Sbjct: 51 GGALDTRMGVSSSQAE-CSTCHGNLASCHGHFGHIKLSLPVFHVGYFKATIQVLQSICKT 109
Query: 217 CHKINIPATSQLLFINQIK 235
C + + + F+++++
Sbjct: 110 CAALLLSEEDKHQFLSELR 128
>gi|365984467|ref|XP_003669066.1| hypothetical protein NDAI_0C01620 [Naumovozyma dairenensis CBS 421]
gi|343767834|emb|CCD23823.1| hypothetical protein NDAI_0C01620 [Naumovozyma dairenensis CBS 421]
Length = 1460
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 105/199 (52%), Gaps = 27/199 (13%)
Query: 406 RSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALK 465
R L PP +RP M Q P + + + L ++ S L+ L+
Sbjct: 259 RYLPAPPVCIRPSVMMQDSPASNEDDLTVK--------LTEIVWT------SSLIKAGLE 304
Query: 466 GIRGDTLNNKLQNSWHELQYNVDLLMDA-KLNINKTTGAHQ-------IDGLKQMLDGKT 517
+G ++NN +++ W LQ V + +++ +N GA I G Q L GK
Sbjct: 305 --KGISINNMMEH-WDYLQLTVAMYINSDSVNPAMLPGASSGGGKVKPIRGFCQRLKGKQ 361
Query: 518 GMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVI 577
G R N+ GKRV+F+GR+VI+PDP L+ID + VP AK LT+P VT +N L++++I
Sbjct: 362 GRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTFPEKVTRYNRQKLQQLII 421
Query: 578 NGPNVYPGANMI--QNEDG 594
NGPNV+PGAN + NED
Sbjct: 422 NGPNVHPGANYLLKNNEDA 440
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI- 72
F R+VI+PDP L+ID + VP AK LT+P VT +N L++++INGPNV+PGAN +
Sbjct: 375 FSGRTVISPDPNLSIDEVAVPDRVAKVLTFPEKVTRYNRQKLQQLIINGPNVHPGANYLL 434
Query: 73 -QNEDG 77
NED
Sbjct: 435 KNNEDA 440
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 157 GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFL 216
GG D MG +S C TC N C GH GHI+L +PV + +F+ +L+ C
Sbjct: 51 GGALDKRMG-VSSSSLECETCHGNLASCHGHFGHIKLALPVFHVGYFKATIQILQGICKT 109
Query: 217 CHKINIPATSQLLFINQIK 235
C I + + F+N+++
Sbjct: 110 CSAILLSDKDRRQFLNELR 128
>gi|194042171|ref|XP_001929395.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like [Sus
scrofa]
Length = 1390
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 80/141 (56%), Gaps = 4/141 (2%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
+ W LQ L ++++L+ A + G Q L GK G R N+ GKRV+F+G
Sbjct: 306 IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
R+VI+PDP L ID + VP+ AK LT+P V N+T LRK+V NGP V+PGAN IQ
Sbjct: 366 RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANITFLRKLVRNGPEVHPGANFIQQRH 425
Query: 594 GSVVRISSSQAVQRESLAKRL 614
+ R + RE +A+ L
Sbjct: 426 TQMKRF--LKYGNREKMAQEL 444
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP+ AK LT+P V N+T LRK+V NGP V+PGAN IQ
Sbjct: 363 FSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANITFLRKLVRNGPEVHPGANFIQ 422
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ R + RE +A+ L
Sbjct: 423 QRHTQMKRF--LKYGNREKMAQEL 444
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+E++Q + ++V S ++ + P G+ D MG SE+ PC TCG N C GH G
Sbjct: 26 EEMRQQAHIQVVSKNLYSQDNNHSPLLYGVLDHRMG-TSEKDRPCETCGKNLADCLGHYG 84
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
+I+L +P + +FR V +L++ C C I + + F++ +K
Sbjct: 85 YIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEERKQFLDYLK 130
>gi|238881190|gb|EEQ44828.1| DNA-directed RNA polymerase III largest subunit [Candida albicans
WO-1]
Length = 1448
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 103/202 (50%), Gaps = 29/202 (14%)
Query: 403 MFI-RSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLS 461
M+I R L PP +RP M E I+++ +++ I
Sbjct: 254 MYIWRYLPAPPVCIRPSVMMDAQSNEDDLTVKLTEIVWTSSMIRAGI------------- 300
Query: 462 EALKGIRGDTLNNKLQNSWHELQYNVDLLMDA-KLNINKTTG------AHQIDGLKQMLD 514
++G ++NN L W LQ +V + +++ N +TG + I Q L
Sbjct: 301 -----VKGISINN-LMEQWDYLQLSVAMYINSDSANPALSTGGGGAKSSKPIRAFCQRLK 354
Query: 515 GKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRK 574
GK G R N+ GKRV+F+GR+VI+PDP L ID + VP AK LTYP T +N L+K
Sbjct: 355 GKQGRFRGNLSGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQK 414
Query: 575 MVINGPNVYPGAN--MIQNEDG 594
+V+NGP+++PGAN M QNE G
Sbjct: 415 LVVNGPDIHPGANYVMKQNEPG 436
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 45/66 (68%), Gaps = 2/66 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGAN--M 71
F R+VI+PDP L ID + VP AK LTYP T +N L+K+V+NGP+++PGAN M
Sbjct: 371 FSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQKLVVNGPDIHPGANYVM 430
Query: 72 IQNEDG 77
QNE G
Sbjct: 431 KQNEPG 436
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 158 GLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLC 217
G D MG IS C+TC N C GH GHI L +PV + +F+ + +L+ C C
Sbjct: 52 GALDTKMG-ISSNAQECSTCHGNLASCHGHFGHIRLALPVFHVGYFKSIISVLQCICKSC 110
Query: 218 HKINIPATSQLLFINQIK 235
+ + S+ ++N ++
Sbjct: 111 AAVLLDEQSKRQYLNDLR 128
>gi|327242111|gb|AEA40834.1| RNA polymerase II largest subunit [Monocercomonas sp. ATCC 50210]
Length = 1019
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 114/227 (50%), Gaps = 25/227 (11%)
Query: 388 IPVLDTTKELIATDIMFIRSLVVPPNNLRP-LSMEQMPPVEHSRNKLYQSILYSCGSLKS 446
I VL E + M L VPP ++RP + M+ P + +IL + LK
Sbjct: 155 IRVLGFNTERARPEWMISTILPVPPPHVRPAIVMDSSRPSQDDVTHKLATILQTNNHLKK 214
Query: 447 VIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVD-LLMDAKLNINKTT--GA 503
+I N +Q Q++ LQY++ L++ K + + T
Sbjct: 215 LIQ--DNAQQV-----------------AQQDAIEMLQYHISTYLINDKPALQRATTKNG 255
Query: 504 HQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVP 563
I + Q L GK G IR ++ GKRVNF+ RSVI+PDP ++ID +GVPLE AK LT+P
Sbjct: 256 RPIKAISQRLKGKEGHIRGHLSGKRVNFSARSVISPDPSISIDQVGVPLEIAKVLTFPEV 315
Query: 564 VTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESL 610
VTP N L+++V NGP+ GAN I G +RI+ + +R +L
Sbjct: 316 VTPRNREYLQQLVYNGPDAQQGANYIITPQG--IRINLAVTEERSAL 360
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 52/80 (65%), Gaps = 2/80 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDP ++ID +GVPLE AK LT+P VTP N L+++V NGP+ GAN I
Sbjct: 283 FSARSVISPDPSISIDQVGVPLEIAKVLTFPEVVTPRNREYLQQLVYNGPDAQQGANYII 342
Query: 74 NEDGSVVRISSSQAVQRESL 93
G +RI+ + +R +L
Sbjct: 343 TPQG--IRINLAVTEERSAL 360
>gi|422295501|gb|EKU22800.1| DNA-directed RNA polymerase III subunit RPC1, partial
[Nannochloropsis gaditana CCMP526]
Length = 535
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/115 (45%), Positives = 77/115 (66%), Gaps = 2/115 (1%)
Query: 502 GAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYP 561
G +I GL Q L GK+G R N+ GKRV+F+GR+VI+PDP L ID +GVPL+ AK +TYP
Sbjct: 21 GEKKIRGLCQRLKGKSGRFRGNLSGKRVDFSGRTVISPDPNLAIDQVGVPLQVAKIMTYP 80
Query: 562 VPVTPWNVTLLRKMVINGPNVYPGANMIQ--NEDGSVVRISSSQAVQRESLAKRL 614
V+ N L+++V+NGP+ +PGAN+I+ ++ +S + QR +A+ L
Sbjct: 81 ERVSASNRERLKRLVLNGPSHHPGANIIRPSGDNAFTKSLSYADERQRRKMAEDL 135
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID +GVPL+ AK +TYP V+ N L+++V+NGP+ +PGAN+I+
Sbjct: 50 FSGRTVISPDPNLAIDQVGVPLQVAKIMTYPERVSASNRERLKRLVLNGPSHHPGANIIR 109
Query: 74 --NEDGSVVRISSSQAVQRESLAKRL 97
++ +S + QR +A+ L
Sbjct: 110 PSGDNAFTKSLSYADERQRRKMAEDL 135
>gi|206601334|gb|ACI16386.1| RNA polymerase II largest subunit [Polyblastia gotlandica]
Length = 353
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 73/114 (64%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 210 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 269
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TLTYP VTP+N++ L+ +V GP +PGA I E+
Sbjct: 270 DPNLSLDEVGVPRSIARTLTYPETVTPFNISRLKWLVTRGPENHPGARYIIREN 323
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N++ L+ +V GP +PGA I
Sbjct: 261 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPFNISRLKWLVTRGPENHPGARYII 320
Query: 74 NED 76
E+
Sbjct: 321 REN 323
>gi|342306129|dbj|BAK54218.1| DNA-directed RNA polymerase subunit A' [Sulfolobus tokodaii str. 7]
Length = 880
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 80/142 (56%), Gaps = 5/142 (3%)
Query: 476 LQNSWHELQYNVDLLMDAKLN---INKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFA 532
+++ W LQY+V D ++ K + L Q L GK G R N+ GKRV+F+
Sbjct: 262 IEDLWDLLQYHVSTYFDNEIPGIPPAKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFS 321
Query: 533 GRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
R+VI+PDP ++ID +GVP+ AKTLT P VT N+ +R+ VINGP +PGAN +
Sbjct: 322 ARTVISPDPNISIDEVGVPVAIAKTLTVPERVTKMNIERMRQYVINGPEKWPGANYVIRP 381
Query: 593 DGSVVRISSSQAVQRESLAKRL 614
DG RI R+ LA L
Sbjct: 382 DGR--RIDLRYVKDRKELASSL 401
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP ++ID +GVP+ AKTLT P VT N+ +R+ VINGP +PGAN +
Sbjct: 320 FSARTVISPDPNISIDEVGVPVAIAKTLTVPERVTKMNIERMRQYVINGPEKWPGANYVI 379
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
DG RI R+ LA L
Sbjct: 380 RPDGR--RIDLRYVKDRKELASSL 401
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 60/114 (52%), Gaps = 8/114 (7%)
Query: 109 MKEKIITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPIS 168
M EKII + +K + E++++SV + + ++ G I GG+ D +G I
Sbjct: 1 MSEKII-------KGIKFGILSPDEIRKMSVTAIITSEVYDEDGTPIEGGVMDPRLGVI- 52
Query: 169 ERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINI 222
E G C TCGN C GH GHIEL PVI+ F + V +L+ +C C ++ I
Sbjct: 53 EPGQKCPTCGNTLNGCPGHFGHIELVRPVIHVGFVKHVYDILRATCRHCGRLKI 106
>gi|320592285|gb|EFX04724.1| DNA-directed RNA polymerase 3 largest [Grosmannia clavigera kw1407]
Length = 1390
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 86/304 (28%), Positives = 138/304 (45%), Gaps = 44/304 (14%)
Query: 310 RKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEV 369
++C +C + +I K I K+ D + +KS RKRE + SE
Sbjct: 109 KECPYCQSLNGSI-----KKIGPLKVAHDRF-AAFNKSTAAKKIPPARKREFEHSF-SEA 161
Query: 370 EADFKKLWTNEHLFLKCLIP--VLDTTKELIATDI-------------MFI-RSLVVPPN 413
L + H L+ L P VL+ K++ +D MFI + L PP
Sbjct: 162 RKRIPDLEKHLHRALEDLDPLHVLNLFKKISPSDCELLGLDPLDGRPEMFIWQYLPAPPV 221
Query: 414 NLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLN 473
+RP +Q E I+ CG +++ + ++G +
Sbjct: 222 CIRPSVQQQSSSTEDDLTTKLAEIVQVCGLIRTAL------------------VKGAPIT 263
Query: 474 NKLQNSWHELQYNVDLLMDAKL-NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFA 532
L W LQ+ + + ++++L + I G Q L GK G R N+ GKRV+F+
Sbjct: 264 T-LMEQWEFLQFQLAMYINSELPGLTAARHGKPIRGFSQRLKGKQGRFRGNLSGKRVDFS 322
Query: 533 GRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGA-NMIQN 591
GR+VI+PDP L I+ + VP+ AK L+YP V N+ LR +V+NGP +PGA ++++
Sbjct: 323 GRTVISPDPNLAINEVAVPVLVAKNLSYPERVNHINIRKLRNLVLNGPTQWPGAKSILKK 382
Query: 592 EDGS 595
+DG
Sbjct: 383 DDGG 386
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGA-NMI 72
F R+VI+PDP L I+ + VP+ AK L+YP V N+ LR +V+NGP +PGA +++
Sbjct: 321 FSGRTVISPDPNLAINEVAVPVLVAKNLSYPERVNHINIRKLRNLVLNGPTQWPGAKSIL 380
Query: 73 QNEDGS 78
+ +DG
Sbjct: 381 KKDDGG 386
>gi|405974578|gb|EKC39212.1| DNA-directed RNA polymerase III subunit RPC1 [Crassostrea gigas]
Length = 1368
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 81/146 (55%), Gaps = 14/146 (9%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTG-------AHQIDGLKQMLDGKTGMIRQNMMGKR 528
+ W LQ V LL +++ T+G G Q L GK G R N+ GKR
Sbjct: 304 IMEDWDYLQLQVALLYNSE-----TSGIPLHMQPKKMTRGFVQRLKGKQGRFRGNLSGKR 358
Query: 529 VNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANM 588
V+F+GR+VI+PDP + ID + VP+ AK LTYP V N+ L+RK+V NG + +PGAN
Sbjct: 359 VDFSGRTVISPDPNMRIDQVAVPVHVAKVLTYPERVNKANIKLMRKLVKNGCDTHPGANF 418
Query: 589 IQNEDGSVVRISSSQAVQRESLAKRL 614
IQ D ++ R + RE +AK L
Sbjct: 419 IQQRDNNMKRY--LRYGNREKIAKEL 442
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP + ID + VP+ AK LTYP V N+ L+RK+V NG + +PGAN IQ
Sbjct: 361 FSGRTVISPDPNMRIDQVAVPVHVAKVLTYPERVNKANIKLMRKLVKNGCDTHPGANFIQ 420
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
D ++ R + RE +AK L
Sbjct: 421 QRDNNMKRY--LRYGNREKIAKEL 442
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 132 QEVKQLSVVKVFSPITFNSLG--HTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+++QLS + V S ++ G +P G D MG S++ + C TCG C GH G
Sbjct: 26 HQMQQLSHLHVVSKNLYSQDGGRKPVPFGALDHKMG-TSDKENSCETCGKGLADCTGHYG 84
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
+I+L +P + +FR LL++ C C + + + F+ +K
Sbjct: 85 YIDLELPCFHIGYFRATIQLLQMICKTCSQALLSPDQKKTFMENVK 130
>gi|226876203|gb|ACO89422.1| RNA polymerase II largest subunit, partial [Chaetothyriales sp.
TRN4]
Length = 362
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 78/124 (62%), Gaps = 3/124 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
L+++V+ MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 215 LEFHVNTYMDNEIAGLDKAQHKSGRPIKAIRARLKGKDGRLRQNLMGKRVDFSARTVITG 274
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
DP L++D +GVP A+TLTYP VTP+N+ L++ V NGP +PGA + + G + +
Sbjct: 275 DPNLSLDEVGVPRSIARTLTYPEVVTPFNIDRLKRYVANGPTEHPGARYVIRDTGDRIDL 334
Query: 600 SSSQ 603
++
Sbjct: 335 RHAK 338
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 47/73 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N+ L++ V NGP +PGA +
Sbjct: 266 FSARTVITGDPNLSLDEVGVPRSIARTLTYPEVVTPFNIDRLKRYVANGPTEHPGARYVI 325
Query: 74 NEDGSVVRISSSQ 86
+ G + + ++
Sbjct: 326 RDTGDRIDLRHAK 338
>gi|206601403|gb|ACI16420.1| RNA polymerase II largest subunit [Polyblastia sp. Nordin 5501]
Length = 355
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 73/114 (64%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 211 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 270
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TLTYP VTP+N++ L+ +V GP +PGA I E+
Sbjct: 271 DPNLSLDEVGVPRSIARTLTYPETVTPFNISRLKYLVTRGPENHPGARYIIREN 324
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N++ L+ +V GP +PGA I
Sbjct: 262 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPFNISRLKYLVTRGPENHPGARYII 321
Query: 74 NED 76
E+
Sbjct: 322 REN 324
>gi|15920465|ref|NP_376134.1| DNA-directed RNA polymerase subunit A' [Sulfolobus tokodaii str. 7]
Length = 884
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 80/142 (56%), Gaps = 5/142 (3%)
Query: 476 LQNSWHELQYNVDLLMDAKLN---INKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFA 532
+++ W LQY+V D ++ K + L Q L GK G R N+ GKRV+F+
Sbjct: 266 IEDLWDLLQYHVSTYFDNEIPGIPPAKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFS 325
Query: 533 GRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
R+VI+PDP ++ID +GVP+ AKTLT P VT N+ +R+ VINGP +PGAN +
Sbjct: 326 ARTVISPDPNISIDEVGVPVAIAKTLTVPERVTKMNIERMRQYVINGPEKWPGANYVIRP 385
Query: 593 DGSVVRISSSQAVQRESLAKRL 614
DG RI R+ LA L
Sbjct: 386 DGR--RIDLRYVKDRKELASSL 405
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP ++ID +GVP+ AKTLT P VT N+ +R+ VINGP +PGAN +
Sbjct: 324 FSARTVISPDPNISIDEVGVPVAIAKTLTVPERVTKMNIERMRQYVINGPEKWPGANYVI 383
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
DG RI R+ LA L
Sbjct: 384 RPDGR--RIDLRYVKDRKELASSL 405
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 8/115 (6%)
Query: 108 IMKEKIITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPI 167
IM EKII + +K + E++++SV + + ++ G I GG+ D +G I
Sbjct: 4 IMSEKII-------KGIKFGILSPDEIRKMSVTAIITSEVYDEDGTPIEGGVMDPRLGVI 56
Query: 168 SERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINI 222
E G C TCGN C GH GHIEL PVI+ F + V +L+ +C C ++ I
Sbjct: 57 -EPGQKCPTCGNTLNGCPGHFGHIELVRPVIHVGFVKHVYDILRATCRHCGRLKI 110
>gi|221486415|gb|EEE24676.1| DNA-directed RNA polymerase II largest subunit, putative
[Toxoplasma gondii GT1]
gi|221508191|gb|EEE33778.1| DNA-directed RNA polymerase II largest subunit, putative
[Toxoplasma gondii VEG]
Length = 1892
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/132 (43%), Positives = 80/132 (60%), Gaps = 4/132 (3%)
Query: 468 RGDTLNNK-LQNSWHELQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQN 523
+GD++ + LQ LQY+V L D + + T G I ++ L GK G +R N
Sbjct: 287 QGDSVPSAVLQEMVMLLQYHVTTLFDNDIPGMPVATTRGKKPIKSIRARLKGKEGRLRGN 346
Query: 524 MMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVY 583
+MGKRV+F+ R+VIT DP L ID++GVP A TLTYP VTP N+ LR++V GP +
Sbjct: 347 LMGKRVDFSARTVITGDPMLPIDTVGVPKSIAMTLTYPEFVTPLNIGQLRQLVKTGPFDW 406
Query: 584 PGANMIQNEDGS 595
PGA + +DGS
Sbjct: 407 PGAKYVIRDDGS 418
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 43/65 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L ID++GVP A TLTYP VTP N+ LR++V GP +PGA +
Sbjct: 354 FSARTVITGDPMLPIDTVGVPKSIAMTLTYPEFVTPLNIGQLRQLVKTGPFDWPGAKYVI 413
Query: 74 NEDGS 78
+DGS
Sbjct: 414 RDDGS 418
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 6/99 (6%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGPISERGDPCTTCGNNY 181
L+ ++ ++++++SV +V + + H +P GL DL +G + R C TC +
Sbjct: 22 LQFGVFSSEQLRKMSVCEVTTSELYE---HGMPKANGLNDLRLGTLDYRQQ-CRTCNMDV 77
Query: 182 TKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKI 220
C GH GH+ L PV + F V +L+ C+ C K+
Sbjct: 78 KNCPGHFGHLNLVKPVYHYGFLGAVLRVLRCVCYACGKL 116
>gi|157741512|gb|ABV69461.1| RNA polymerase II largest subunit, partial [Placidium
acarosporoides]
Length = 357
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 74/113 (65%), Gaps = 3/113 (2%)
Query: 483 LQYNVDLLMDAKL-NINKT--TGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD + N++K I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 212 LQYHVATYMDNDITNLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 271
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
DP L++D +GVP A+TLTYP VT +N++ L++ V NGP ++PGA I E
Sbjct: 272 DPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKQFVTNGPEMHPGARYIIRE 324
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 43/62 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N++ L++ V NGP ++PGA I
Sbjct: 263 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKQFVTNGPEMHPGARYII 322
Query: 74 NE 75
E
Sbjct: 323 RE 324
>gi|440296621|gb|ELP89407.1| DNA-directed RNA polymerase III subunit RPC1, putative [Entamoeba
invadens IP1]
Length = 1381
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 85/140 (60%), Gaps = 2/140 (1%)
Query: 475 KLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGR 534
+ +W +L V L++++ L + + G + L Q L GK G R N++GKRV+F+GR
Sbjct: 325 QFYEAWDQLTVAVSLIINSDLPMCEEKG-KPLRSLCQRLKGKHGRFRGNLLGKRVDFSGR 383
Query: 535 SVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDG 594
+VI+PDP L+++ +GVP A TLTYP VT +N+ +R++V NGP+ YPG N I DG
Sbjct: 384 TVISPDPNLDVEQLGVPQLMAITLTYPERVTRYNIEKMRQLVRNGPDTYPGCNGIIMIDG 443
Query: 595 SVVRISSSQAVQRESLAKRL 614
+ R + RE AK L
Sbjct: 444 N-RRSMMIKPEMREKFAKEL 462
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L+++ +GVP A TLTYP VT +N+ +R++V NGP+ YPG N I
Sbjct: 380 FSGRTVISPDPNLDVEQLGVPQLMAITLTYPERVTRYNIEKMRQLVRNGPDTYPGCNGII 439
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
DG+ R + RE AK L
Sbjct: 440 MIDGN-RRSMMIKPEMREKFAKEL 462
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 156 PGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCF 215
P G+ D +G + + + C TCG N +C GH G I L +PV + FFR + +L+ C
Sbjct: 74 PDGVLDRRLG-VCDSVNTCKTCGKNVDECCGHFGEINLALPVFHIGFFRPIIQVLQCVCK 132
Query: 216 LCHKINIPATSQLLFINQIK 235
C+++ + + ++ +++
Sbjct: 133 NCNRLLLTDEEREYYLKRMR 152
>gi|401409792|ref|XP_003884344.1| putative DNA-directed RNA polymerase II largest subunit [Neospora
caninum Liverpool]
gi|325118762|emb|CBZ54313.1| putative DNA-directed RNA polymerase II largest subunit [Neospora
caninum Liverpool]
Length = 1901
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/132 (43%), Positives = 80/132 (60%), Gaps = 4/132 (3%)
Query: 468 RGDTLNNK-LQNSWHELQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQN 523
+GD++ + LQ LQY+V L D + + T G I ++ L GK G +R N
Sbjct: 287 QGDSVPSAVLQEMVMLLQYHVTTLFDNDIPGMPVATTRGKKPIKSIRARLKGKEGRLRGN 346
Query: 524 MMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVY 583
+MGKRV+F+ R+VIT DP L ID++GVP A TLTYP VTP N+ LR++V GP +
Sbjct: 347 LMGKRVDFSARTVITGDPMLPIDTVGVPKSIAMTLTYPEFVTPLNIGQLRQLVKTGPFDW 406
Query: 584 PGANMIQNEDGS 595
PGA + +DGS
Sbjct: 407 PGAKYVIRDDGS 418
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 43/65 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L ID++GVP A TLTYP VTP N+ LR++V GP +PGA +
Sbjct: 354 FSARTVITGDPMLPIDTVGVPKSIAMTLTYPEFVTPLNIGQLRQLVKTGPFDWPGAKYVI 413
Query: 74 NEDGS 78
+DGS
Sbjct: 414 RDDGS 418
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 10/114 (8%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGPISERGDPCTTCGNNY 181
L+ ++ ++++++SV +V + + H +P GL DL +G + R C TC +
Sbjct: 22 LQFGVFSSEQIRKMSVCEVTTSELYE---HGMPKANGLNDLRLGTLDYRQQ-CRTCNMDV 77
Query: 182 TKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINI----PATSQLLFI 231
C GH GH+ L PV + F V +L+ C+ C K+ + P Q+L I
Sbjct: 78 KNCPGHFGHLNLVKPVYHYGFLGAVLRVLRCVCYACGKLLVDRRDPKMQQVLKI 131
>gi|226876221|gb|ACO89431.1| RNA polymerase II largest subunit, partial [Chaetothyriales sp.
TRN475]
Length = 972
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY++ MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 205 LQYHIATYMDNDIAGLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 264
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L++D +GVP A+TLTYP VTP+N+ L ++V NGP +PGA + + G +
Sbjct: 265 DPNLSLDEVGVPRSIARTLTYPETVTPFNIQKLARLVANGPTEHPGARYVIRDTGERI 322
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 44/67 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N+ L ++V NGP +PGA +
Sbjct: 256 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPFNIQKLARLVANGPTEHPGARYVI 315
Query: 74 NEDGSVV 80
+ G +
Sbjct: 316 RDTGERI 322
>gi|378729993|gb|EHY56452.1| DNA-directed RNA polymerase II subunit A [Exophiala dermatitidis
NIH/UT8656]
Length = 1762
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 75/120 (62%), Gaps = 3/120 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY++ MD A L + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 305 LQYHIATYMDNEIAGLERAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 364
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
DP L++D +GVP A+TLTYP VTP+N+ L+++V NGP +PGA + + G + +
Sbjct: 365 DPNLSLDEVGVPRSIARTLTYPETVTPFNLDKLKRLVANGPTEHPGARYVIRDTGERIDL 424
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 46/69 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N+ L+++V NGP +PGA +
Sbjct: 356 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPFNLDKLKRLVANGPTEHPGARYVI 415
Query: 74 NEDGSVVRI 82
+ G + +
Sbjct: 416 RDTGERIDL 424
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLG-HTIPGGLYDLAMGPISERGDPCTTCGNN 180
E ++ ++ +E ++L+V+++ P T + G D +G I +R C+TC N
Sbjct: 17 EEIQFGLFSAKETERLAVIEIEYPETMDEQRLRPREKGPNDPHLGTI-DRNFKCSTCEEN 75
Query: 181 YTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLD 238
++C GH G I+L PV + F V+ +L+ C C KI A F + I L D
Sbjct: 76 MSECPGHFGVIKLATPVYHYGFMGKVKKILETVCLNCGKIK--ALDNEEFRHAISLRD 131
>gi|111154414|gb|ABH07421.1| RNA polymerase II largest subunit [Pyrgillus javanicus]
Length = 971
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 74/123 (60%), Gaps = 13/123 (10%)
Query: 483 LQYNVDLLMDAKLNINKTTGAHQ--------IDGLKQMLDGKTGMIRQNMMGKRVNFAGR 534
LQY+V MD N G Q I ++ L GK G +R N+MGKRV+F+ R
Sbjct: 215 LQYHVATYMD-----NDIAGQPQAMQKSGRPIKSIRSRLKGKEGRLRGNLMGKRVDFSAR 269
Query: 535 SVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDG 594
+VIT DPYL++D +GVP KTLTYP VTP+N++ L ++V NGPN +PGA + + G
Sbjct: 270 TVITGDPYLDLDQVGVPRTICKTLTYPETVTPYNISKLHELVRNGPNEHPGAKYVIRDTG 329
Query: 595 SVV 597
+
Sbjct: 330 ERI 332
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 46/67 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DPYL++D +GVP KTLTYP VTP+N++ L ++V NGPN +PGA +
Sbjct: 266 FSARTVITGDPYLDLDQVGVPRTICKTLTYPETVTPYNISKLHELVRNGPNEHPGAKYVI 325
Query: 74 NEDGSVV 80
+ G +
Sbjct: 326 RDTGERI 332
>gi|403375855|gb|EJY87901.1| RNA polymerase III [Oxytricha trifallax]
Length = 1365
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/143 (39%), Positives = 83/143 (58%), Gaps = 5/143 (3%)
Query: 474 NKLQNSWHELQYNVDLLMDAKLNI--NKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNF 531
+KL W LQY + +++ + G QI L Q L GK G RQN+ GKRV+F
Sbjct: 255 SKLIEDWLLLQYTIAQYFNSETPGLPHNLLGNKQIRALSQRLKGKHGRFRQNLSGKRVDF 314
Query: 532 AGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQN 591
GR+VI+PDP ID + +P+ AK LT+P V +N+ LR +V GP+V+PGAN +++
Sbjct: 315 TGRTVISPDPNCAIDEVMIPIYIAKNLTFPERVNQYNIDKLRNLVKIGPDVHPGANYVES 374
Query: 592 EDGSVVRISSSQAVQRESLAKRL 614
+DG+ V + Q R A+ L
Sbjct: 375 QDGNKVLL---QYANRRKAAEEL 394
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 52/84 (61%), Gaps = 3/84 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP ID + +P+ AK LT+P V +N+ LR +V GP+V+PGAN ++
Sbjct: 314 FTGRTVISPDPNCAIDEVMIPIYIAKNLTFPERVNQYNIDKLRNLVKIGPDVHPGANYVE 373
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
++DG+ V + Q R A+ L
Sbjct: 374 SQDGNKVLL---QYANRRKAAEEL 394
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 151 LGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLL 210
+G GG D MG ISERG C TC C GH G+++L +PV + +F+ +L
Sbjct: 1 MGTPQKGGPLDTRMG-ISERGKFCETCKKALADCPGHFGYVKLELPVFHVGYFKHSVNIL 59
Query: 211 KLSCFLCHKINIPATSQLLFINQIK 235
+ +C C + + ++ +I Q++
Sbjct: 60 QCTCKECSNLLLDDVEKVKYIRQMR 84
>gi|147921534|ref|YP_684650.1| DNA-directed RNA polymerase subunit A' [Methanocella arvoryzae
MRE50]
gi|110620046|emb|CAJ35324.1| DNA-directed RNA polymerase, subunit A1 [Methanocella arvoryzae
MRE50]
Length = 877
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 84/142 (59%), Gaps = 6/142 (4%)
Query: 476 LQNSWHELQYNVDLLMDAKLNI---NKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFA 532
+++ W LQY+V MD ++ + + L Q L GK G R ++ GKRVNF+
Sbjct: 257 IEDLWELLQYHVTTYMDNAVSGVPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNFS 316
Query: 533 GRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
R+VI+PDP L+I+ +GVPL AK +T PV VTP+N+ ++R+ V G +PGAN ++
Sbjct: 317 ARTVISPDPNLSINEVGVPLRIAKEMTVPVTVTPFNIEVVREYVRRGSENHPGANYVKRA 376
Query: 593 DGSVVRISSSQAVQRESLAKRL 614
DG ++I+ E LA ++
Sbjct: 377 DGRRLKITDKNC---EELADQI 395
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 54/84 (64%), Gaps = 3/84 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L+I+ +GVPL AK +T PV VTP+N+ ++R+ V G +PGAN ++
Sbjct: 315 FSARTVISPDPNLSINEVGVPLRIAKEMTVPVTVTPFNIEVVREYVRRGSENHPGANYVK 374
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
DG ++I+ E LA ++
Sbjct: 375 RADGRRLKITDKNC---EELADQI 395
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
++ + E++++SV K+ + T++ G+ I GL D +G I + G C TCG +
Sbjct: 10 IRFGLLSPAEIRKMSVTKIITADTYDDDGYPIDMGLMDPRLGVI-DPGLRCRTCGGRPGE 68
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
C GH GHIEL PVI+ F R ++ +L+ +C C ++ + ++ ++ QI+
Sbjct: 69 CPGHFGHIELAAPVIHVGFARLLRKVLRTTCRKCGRLLMDEKTKAEYLRQIQ 120
>gi|226876156|gb|ACO89399.1| RNA polymerase II largest subunit, partial [Capronia sp. WUC
15.551]
Length = 984
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 75/118 (63%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY++ MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 211 LQYHIATYMDNEIAGLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 270
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L++D +GVP A+TLTYP VT +N+ L+ +V NGPNV+PGA + + G +
Sbjct: 271 DPNLSLDEVGVPRSIARTLTYPENVTAFNLDKLKHLVKNGPNVHPGARYVIRDTGERI 328
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 45/67 (67%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N+ L+ +V NGPNV+PGA +
Sbjct: 262 FSARTVITGDPNLSLDEVGVPRSIARTLTYPENVTAFNLDKLKHLVKNGPNVHPGARYVI 321
Query: 74 NEDGSVV 80
+ G +
Sbjct: 322 RDTGERI 328
>gi|237833803|ref|XP_002366199.1| DNA-directed RNA polymerase II largest subunit, putative
[Toxoplasma gondii ME49]
gi|211963863|gb|EEA99058.1| DNA-directed RNA polymerase II largest subunit, putative
[Toxoplasma gondii ME49]
Length = 1892
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/132 (43%), Positives = 79/132 (59%), Gaps = 4/132 (3%)
Query: 468 RGDTLNNK-LQNSWHELQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQN 523
+GD++ LQ LQY+V L D + + T G I ++ L GK G +R N
Sbjct: 287 QGDSVPGAVLQEMVMLLQYHVTTLFDNDIPGMPVATTRGKKPIKSIRARLKGKEGRLRGN 346
Query: 524 MMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVY 583
+MGKRV+F+ R+VIT DP L ID++GVP A TLTYP VTP N+ LR++V GP +
Sbjct: 347 LMGKRVDFSARTVITGDPMLPIDTVGVPKSIAMTLTYPEFVTPLNIGQLRQLVKTGPFDW 406
Query: 584 PGANMIQNEDGS 595
PGA + +DGS
Sbjct: 407 PGAKYVIRDDGS 418
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 43/65 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L ID++GVP A TLTYP VTP N+ LR++V GP +PGA +
Sbjct: 354 FSARTVITGDPMLPIDTVGVPKSIAMTLTYPEFVTPLNIGQLRQLVKTGPFDWPGAKYVI 413
Query: 74 NEDGS 78
+DGS
Sbjct: 414 RDDGS 418
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 6/99 (6%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGPISERGDPCTTCGNNY 181
L+ ++ ++++++SV +V + + H +P GL DL +G + R C TC +
Sbjct: 22 LQFGVFSSEQLRKMSVCEVTTSELYE---HGMPKANGLNDLRLGTLDYRQQ-CRTCNMDV 77
Query: 182 TKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKI 220
C GH GH+ L PV + F V +L+ C+ C K+
Sbjct: 78 KNCPGHFGHLNLVKPVYHYGFLGAVLRVLRCVCYACGKL 116
>gi|68481134|ref|XP_715482.1| hypothetical protein CaO19.10615 [Candida albicans SC5314]
gi|46437106|gb|EAK96458.1| hypothetical protein CaO19.10615 [Candida albicans SC5314]
Length = 1448
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 103/202 (50%), Gaps = 29/202 (14%)
Query: 403 MFI-RSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLS 461
M+I R L PP +RP M E I+++ +++ I
Sbjct: 254 MYIWRYLPAPPVCIRPSVMMDSQSNEDDLTVKLTEIVWTSSMIRAGI------------- 300
Query: 462 EALKGIRGDTLNNKLQNSWHELQYNVDLLMDA-KLNINKTTG------AHQIDGLKQMLD 514
++G ++NN L W LQ +V + +++ N +TG + I Q L
Sbjct: 301 -----VKGISINN-LMEQWDYLQLSVAMYINSDSANPALSTGGGGAKSSKPIRAFCQRLK 354
Query: 515 GKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRK 574
GK G R N+ GKRV+F+GR+VI+PDP L ID + VP AK LTYP T +N L+K
Sbjct: 355 GKQGRFRGNLSGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQK 414
Query: 575 MVINGPNVYPGAN--MIQNEDG 594
+V+NGP+++PGAN M QNE G
Sbjct: 415 LVVNGPDIHPGANYVMKQNEPG 436
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 45/66 (68%), Gaps = 2/66 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGAN--M 71
F R+VI+PDP L ID + VP AK LTYP T +N L+K+V+NGP+++PGAN M
Sbjct: 371 FSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQKLVVNGPDIHPGANYVM 430
Query: 72 IQNEDG 77
QNE G
Sbjct: 431 KQNEPG 436
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 158 GLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLC 217
G D MG IS C+TC N C GH GHI L +PV + +F+ + +L+ C C
Sbjct: 52 GALDTKMG-ISSNAQECSTCHGNLASCHGHFGHIRLALPVFHVGYFKSIISVLQCICKSC 110
Query: 218 HKINIPATSQLLFINQIK 235
+ + S+ ++N ++
Sbjct: 111 AAVLLDEQSKRQYLNDLR 128
>gi|68481275|ref|XP_715412.1| hypothetical protein CaO19.3103 [Candida albicans SC5314]
gi|46437034|gb|EAK96387.1| hypothetical protein CaO19.3103 [Candida albicans SC5314]
Length = 1448
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 103/202 (50%), Gaps = 29/202 (14%)
Query: 403 MFI-RSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLS 461
M+I R L PP +RP M E I+++ +++ I
Sbjct: 254 MYIWRYLPAPPVCIRPSVMMDSQSNEDDLTVKLTEIVWTSSMIRAGI------------- 300
Query: 462 EALKGIRGDTLNNKLQNSWHELQYNVDLLMDA-KLNINKTTG------AHQIDGLKQMLD 514
++G ++NN L W LQ +V + +++ N +TG + I Q L
Sbjct: 301 -----VKGISINN-LMEQWDYLQLSVAMYINSDSANPALSTGGGGAKSSKPIRAFCQRLK 354
Query: 515 GKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRK 574
GK G R N+ GKRV+F+GR+VI+PDP L ID + VP AK LTYP T +N L+K
Sbjct: 355 GKQGRFRGNLSGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQK 414
Query: 575 MVINGPNVYPGAN--MIQNEDG 594
+V+NGP+++PGAN M QNE G
Sbjct: 415 LVVNGPDIHPGANYVMKQNEPG 436
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 45/66 (68%), Gaps = 2/66 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGAN--M 71
F R+VI+PDP L ID + VP AK LTYP T +N L+K+V+NGP+++PGAN M
Sbjct: 371 FSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQKLVVNGPDIHPGANYVM 430
Query: 72 IQNEDG 77
QNE G
Sbjct: 431 KQNEPG 436
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 158 GLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLC 217
G D MG IS C+TC N C GH GHI L +PV + +F+ + +L+ C C
Sbjct: 52 GALDTKMG-ISSNAQECSTCHGNLASCHGHFGHIRLALPVFHVGYFKSIISVLQCICKSC 110
Query: 218 HKINIPATSQLLFINQIK 235
+ + S+ ++N ++
Sbjct: 111 AAVLLDEQSKRQYLNDLR 128
>gi|226876195|gb|ACO89418.1| RNA polymerase II largest subunit, partial [Phaeococcomyces
catenatus]
Length = 355
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 78/124 (62%), Gaps = 3/124 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
L+++V+ MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 212 LEFHVNTYMDNEIAGLDKAQHKSGRPIKAIRARLKGKDGRLRQNLMGKRVDFSARTVITG 271
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
DP L++D +GVP A+TLTYP VTP+N+ L++ V NGP +PGA + + G + +
Sbjct: 272 DPNLSLDEVGVPRSIARTLTYPEVVTPFNIDRLKRYVANGPTEHPGARYVIRDTGDRIDL 331
Query: 600 SSSQ 603
++
Sbjct: 332 RHAK 335
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 47/73 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N+ L++ V NGP +PGA +
Sbjct: 263 FSARTVITGDPNLSLDEVGVPRSIARTLTYPEVVTPFNIDRLKRYVANGPTEHPGARYVI 322
Query: 74 NEDGSVVRISSSQ 86
+ G + + ++
Sbjct: 323 RDTGDRIDLRHAK 335
>gi|226876225|gb|ACO89433.1| RNA polymerase II largest subunit, partial [Chaetothyriales sp.
TRN488]
Length = 985
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY++ MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 212 LQYHIATYMDNDIAGLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 271
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L++D +GVP A+TLTYP VTP+N+ L ++V NGP +PGA + + G +
Sbjct: 272 DPNLSLDEVGVPRSIARTLTYPETVTPFNIQKLARLVANGPTEHPGARYVIRDTGERI 329
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 44/67 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N+ L ++V NGP +PGA +
Sbjct: 263 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPFNIQKLARLVANGPTEHPGARYVI 322
Query: 74 NEDGSVV 80
+ G +
Sbjct: 323 RDTGERI 329
>gi|206601350|gb|ACI16394.1| RNA polymerase II largest subunit [Verrucaria rupestris]
Length = 385
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 222 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 281
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TLTYP VT +N++ L+++V GP ++PGA I E+
Sbjct: 282 DPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKELVTRGPEMHPGARYIIREN 335
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 44/63 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N++ L+++V GP ++PGA I
Sbjct: 273 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKELVTRGPEMHPGARYII 332
Query: 74 NED 76
E+
Sbjct: 333 REN 335
>gi|256272995|gb|EEU07959.1| Rpo31p [Saccharomyces cerevisiae JAY291]
gi|349581277|dbj|GAA26435.1| K7_Rpo31p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 1460
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 111/222 (50%), Gaps = 33/222 (14%)
Query: 386 CLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRN---KLYQSILYSCG 442
C + +D T + R L PP +RP M Q P + + KL + + S
Sbjct: 239 CELLGIDATVPSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTS-- 296
Query: 443 SLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKL------- 495
S+I A +K G ++NN +++ W LQ V + +++
Sbjct: 297 ---SLIKAGLDK--------------GISINNMMEH-WDYLQLTVAMYINSDSVNPAMLP 338
Query: 496 -NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEF 554
+ N I G Q L GK G R N+ GKRV+F+GR+VI+PDP L+ID + VP
Sbjct: 339 GSSNGGGKVKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRV 398
Query: 555 AKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI--QNEDG 594
AK LTYP VT +N L+++++NGPNV+PGAN + +NED
Sbjct: 399 AKVLTYPEKVTRYNRHKLQELIVNGPNVHPGANYLLKRNEDA 440
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 47/66 (71%), Gaps = 2/66 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI- 72
F R+VI+PDP L+ID + VP AK LTYP VT +N L+++++NGPNV+PGAN +
Sbjct: 375 FSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELIVNGPNVHPGANYLL 434
Query: 73 -QNEDG 77
+NED
Sbjct: 435 KRNEDA 440
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 3/129 (2%)
Query: 109 MKEKIITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGP 166
MKE +++ + L+ + ++ S V+V + F+ P G D MG
Sbjct: 1 MKEVVVSETPKRIKGLEFSALSAADIVAQSEVEVSTRDLFDLEKDRAPKANGALDPKMG- 59
Query: 167 ISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATS 226
+S C TC N C GH GH++L +PV + +F+ +L+ C C I + T
Sbjct: 60 VSSSSLECATCHGNLASCHGHFGHLKLALPVFHIGYFKATIQILQGICKNCSAILLSETD 119
Query: 227 QLLFINQIK 235
+ F+++++
Sbjct: 120 KRQFLHELR 128
>gi|190407445|gb|EDV10712.1| DNA-directed RNA polymerase III largest subunit [Saccharomyces
cerevisiae RM11-1a]
gi|207341165|gb|EDZ69295.1| YOR116Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259149599|emb|CAY86403.1| Rpo31p [Saccharomyces cerevisiae EC1118]
gi|323331486|gb|EGA72901.1| Rpo31p [Saccharomyces cerevisiae AWRI796]
gi|323352093|gb|EGA84630.1| Rpo31p [Saccharomyces cerevisiae VL3]
Length = 1460
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 111/222 (50%), Gaps = 33/222 (14%)
Query: 386 CLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRN---KLYQSILYSCG 442
C + +D T + R L PP +RP M Q P + + KL + + S
Sbjct: 239 CELLGIDATVPSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTS-- 296
Query: 443 SLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKL------- 495
S+I A +K G ++NN +++ W LQ V + +++
Sbjct: 297 ---SLIKAGLDK--------------GISINNMMEH-WDYLQLTVAMYINSDSVNPAMLP 338
Query: 496 -NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEF 554
+ N I G Q L GK G R N+ GKRV+F+GR+VI+PDP L+ID + VP
Sbjct: 339 GSSNGGGKVKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRV 398
Query: 555 AKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI--QNEDG 594
AK LTYP VT +N L+++++NGPNV+PGAN + +NED
Sbjct: 399 AKVLTYPEKVTRYNRHKLQELIVNGPNVHPGANYLLKRNEDA 440
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 47/66 (71%), Gaps = 2/66 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI- 72
F R+VI+PDP L+ID + VP AK LTYP VT +N L+++++NGPNV+PGAN +
Sbjct: 375 FSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELIVNGPNVHPGANYLL 434
Query: 73 -QNEDG 77
+NED
Sbjct: 435 KRNEDA 440
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 3/129 (2%)
Query: 109 MKEKIITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGP 166
MKE +++ + L+ + ++ S V+V + F+ P G D MG
Sbjct: 1 MKEVVVSETPKRIKGLEFSALSAADIVAQSEVEVSTRDLFDLEKDRAPKANGALDPKMG- 59
Query: 167 ISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATS 226
+S C TC N C GH GH++L +PV + +F+ +L+ C C I + T
Sbjct: 60 VSSSSLECATCHGNLASCHGHFGHLKLALPVFHIGYFKATIQILQGICKNCSAILLSETD 119
Query: 227 QLLFINQIK 235
+ F+++++
Sbjct: 120 KRQFLHELR 128
>gi|157741604|gb|ABV69507.1| RNA polymerase II largest subunit, partial [Hydropunctaria
rheitrophila]
Length = 356
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 73/113 (64%), Gaps = 3/113 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 213 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 272
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
DP L++D +GVP A+TLTYP V +N++ L+++V NGP ++PGA I E
Sbjct: 273 DPNLSLDEVGVPRSIARTLTYPETVNRFNISKLKQLVTNGPEMHPGARYIIRE 325
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 43/62 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP V +N++ L+++V NGP ++PGA I
Sbjct: 264 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVNRFNISKLKQLVTNGPEMHPGARYII 323
Query: 74 NE 75
E
Sbjct: 324 RE 325
>gi|6324690|ref|NP_014759.1| Rpo31p [Saccharomyces cerevisiae S288c]
gi|133356|sp|P04051.1|RPC1_YEAST RecName: Full=DNA-directed RNA polymerase III subunit RPC1;
Short=RNA polymerase III subunit C1; AltName:
Full=DNA-directed RNA polymerase III largest subunit;
AltName: Full=RNA polymerase III subunit C160
gi|4400|emb|CAA26905.1| RNA polymerase III largest subunit [Saccharomyces cerevisiae]
gi|1050828|emb|CAA62123.1| ORF O3254 [Saccharomyces cerevisiae]
gi|1164961|emb|CAA64036.1| YOR3254c [Saccharomyces cerevisiae]
gi|1420309|emb|CAA99314.1| RPO31 [Saccharomyces cerevisiae]
gi|151945738|gb|EDN63979.1| RNA polymerase C [Saccharomyces cerevisiae YJM789]
gi|285814998|tpg|DAA10891.1| TPA: Rpo31p [Saccharomyces cerevisiae S288c]
gi|392296445|gb|EIW07547.1| Rpo31p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 1460
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 111/222 (50%), Gaps = 33/222 (14%)
Query: 386 CLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRN---KLYQSILYSCG 442
C + +D T + R L PP +RP M Q P + + KL + + S
Sbjct: 239 CELLGIDATVPSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTS-- 296
Query: 443 SLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKL------- 495
S+I A +K G ++NN +++ W LQ V + +++
Sbjct: 297 ---SLIKAGLDK--------------GISINNMMEH-WDYLQLTVAMYINSDSVNPAMLP 338
Query: 496 -NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEF 554
+ N I G Q L GK G R N+ GKRV+F+GR+VI+PDP L+ID + VP
Sbjct: 339 GSSNGGGKVKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRV 398
Query: 555 AKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI--QNEDG 594
AK LTYP VT +N L+++++NGPNV+PGAN + +NED
Sbjct: 399 AKVLTYPEKVTRYNRHKLQELIVNGPNVHPGANYLLKRNEDA 440
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 47/66 (71%), Gaps = 2/66 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI- 72
F R+VI+PDP L+ID + VP AK LTYP VT +N L+++++NGPNV+PGAN +
Sbjct: 375 FSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELIVNGPNVHPGANYLL 434
Query: 73 -QNEDG 77
+NED
Sbjct: 435 KRNEDA 440
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 3/129 (2%)
Query: 109 MKEKIITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGP 166
MKE +++ + L+ + ++ S V+V + F+ P G D MG
Sbjct: 1 MKEVVVSETPKRIKGLEFSALSAADIVAQSEVEVSTRDLFDLEKDRAPKANGALDPKMG- 59
Query: 167 ISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATS 226
+S C TC N C GH GH++L +PV + +F+ +L+ C C I + T
Sbjct: 60 VSSSSLECATCHGNLASCHGHFGHLKLALPVFHIGYFKATIQILQGICKNCSAILLSETD 119
Query: 227 QLLFINQIK 235
+ F+++++
Sbjct: 120 KRQFLHELR 128
>gi|238487198|ref|XP_002374837.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus flavus NRRL3357]
gi|317143741|ref|XP_001819667.2| DNA-directed RNA polymerase II subunit RPB1 [Aspergillus oryzae
RIB40]
gi|220699716|gb|EED56055.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus flavus NRRL3357]
Length = 1744
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 82/133 (61%), Gaps = 7/133 (5%)
Query: 483 LQYNVDLLMDAKLNINKTTGAHQ-----IDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVI 537
LQY+V MD +I A Q + ++ L GK G +RQN+MGKRV+F+ R+VI
Sbjct: 311 LQYHVATYMDN--DIAGQPKAMQKSNRPVKAIRSRLKGKEGRLRQNLMGKRVDFSARTVI 368
Query: 538 TPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
T DP L++D +GVP A+TLTYP VTP+N+ L+++V NGPN +PGA I ++G +
Sbjct: 369 TGDPNLSLDEVGVPKSIARTLTYPEVVTPYNIDKLQQLVSNGPNEHPGARYIVRDNGERI 428
Query: 598 RISSSQAVQRESL 610
+ ++ + L
Sbjct: 429 DLRHAKRAGGQQL 441
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 52/80 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N+ L+++V NGPN +PGA I
Sbjct: 362 FSARTVITGDPNLSLDEVGVPKSIARTLTYPEVVTPYNIDKLQQLVSNGPNEHPGARYIV 421
Query: 74 NEDGSVVRISSSQAVQRESL 93
++G + + ++ + L
Sbjct: 422 RDNGERIDLRHAKRAGGQQL 441
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 3/116 (2%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTI-PGGLYDLAMGPISERGDPCTTCGNNYT 182
++ ++ +E+K++SVV V P T + GL D +G I + + C TC
Sbjct: 19 IQFGLFSPEEIKRMSVVHVEYPETMDEQRQRPRTKGLNDPRLGTIDRQWN-CETCEEGQK 77
Query: 183 KCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLD 238
+C GH GHIEL PV + F ++ LL+ C C KI TS F+ +++ D
Sbjct: 78 ECPGHFGHIELATPVFHIGFLTKIKKLLETVCHNCGKIKA-NTSDSKFLEALRMRD 132
>gi|330795314|ref|XP_003285719.1| hypothetical protein DICPUDRAFT_149604 [Dictyostelium purpureum]
gi|325084350|gb|EGC37780.1| hypothetical protein DICPUDRAFT_149604 [Dictyostelium purpureum]
Length = 1755
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 63/87 (72%)
Query: 509 LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWN 568
++Q L GK G IR N+MGKRV+F+ R+VIT DP L+ID +GVP A LTYP VTP+N
Sbjct: 331 IRQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLSIDQVGVPRSIALNLTYPETVTPFN 390
Query: 569 VTLLRKMVINGPNVYPGANMIQNEDGS 595
+ +R+++ NGPN +PGA I EDG+
Sbjct: 391 IDKMRELIRNGPNEHPGAKYIIREDGT 417
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 45/65 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L+ID +GVP A LTYP VTP+N+ +R+++ NGPN +PGA I
Sbjct: 353 FSARTVITADPNLSIDQVGVPRSIALNLTYPETVTPFNIDKMRELIRNGPNEHPGAKYII 412
Query: 74 NEDGS 78
EDG+
Sbjct: 413 REDGT 417
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 99/224 (44%), Gaps = 36/224 (16%)
Query: 133 EVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIE 192
E++ +SV ++ P T+ + G GGL D AMG I ++ C TC +C GH GHIE
Sbjct: 27 EIRNMSVARIEHPETYEN-GKPKIGGLLDPAMGTI-DKTQRCQTCSGTMAECPGHFGHIE 84
Query: 193 LPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETL 252
L PV + F V +L+ CF C K+ + TS+ F +K+ + +
Sbjct: 85 LAKPVFHIGFIDTVLKILRCVCFHCSKL-LTDTSEYSFRQALKIKNQKH----------- 132
Query: 253 FNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKC 312
+L +V+ + K+C I + EE + + L + VK
Sbjct: 133 -----------RLNAVVE------ICKNKKVCAIGGNEEEEEHDLSKTDEELDKAVKHGG 175
Query: 313 IFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQII 356
C + I+ + KII F KD D+S++K S+ +++
Sbjct: 176 --CGNVLPKITKEDLKIIVEF---KDVTDESIEKKSVLSAERVL 214
>gi|226876199|gb|ACO89420.1| RNA polymerase II largest subunit, partial [Knufia chersonesos]
Length = 331
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 78/124 (62%), Gaps = 3/124 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
L+++V+ MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 188 LEFHVNTYMDNEIAGLDKAQHKSGRPIKAIRARLKGKDGRLRQNLMGKRVDFSARTVITG 247
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
DP L++D +GVP A+TLTYP VTP+N+ L++ V NGP +PGA + + G + +
Sbjct: 248 DPNLSLDEVGVPRSIARTLTYPEVVTPFNIDRLKRYVANGPTEHPGARYVIRDTGDRIDL 307
Query: 600 SSSQ 603
++
Sbjct: 308 RHAK 311
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 47/73 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N+ L++ V NGP +PGA +
Sbjct: 239 FSARTVITGDPNLSLDEVGVPRSIARTLTYPEVVTPFNIDRLKRYVANGPTEHPGARYVI 298
Query: 74 NEDGSVVRISSSQ 86
+ G + + ++
Sbjct: 299 RDTGDRIDLRHAK 311
>gi|365763066|gb|EHN04597.1| Rpo31p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 1460
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 111/222 (50%), Gaps = 33/222 (14%)
Query: 386 CLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRN---KLYQSILYSCG 442
C + +D T + R L PP +RP M Q P + + KL + + S
Sbjct: 239 CELLGIDATVPSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTS-- 296
Query: 443 SLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKL------- 495
S+I A +K G ++NN +++ W LQ V + +++
Sbjct: 297 ---SLIKAGLDK--------------GISINNMMEH-WDYLQLTVAMYINSDSVNPAMLP 338
Query: 496 -NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEF 554
+ N I G Q L GK G R N+ GKRV+F+GR+VI+PDP L+ID + VP
Sbjct: 339 GSSNGGGKVKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRV 398
Query: 555 AKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI--QNEDG 594
AK LTYP VT +N L+++++NGPNV+PGAN + +NED
Sbjct: 399 AKVLTYPEKVTRYNRHKLQELIVNGPNVHPGANYLLKRNEDA 440
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 47/66 (71%), Gaps = 2/66 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI- 72
F R+VI+PDP L+ID + VP AK LTYP VT +N L+++++NGPNV+PGAN +
Sbjct: 375 FSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELIVNGPNVHPGANYLL 434
Query: 73 -QNEDG 77
+NED
Sbjct: 435 KRNEDA 440
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 3/129 (2%)
Query: 109 MKEKIITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGP 166
MKE +++ + L+ + ++ S V+V + F+ P G D MG
Sbjct: 1 MKEVVVSETPKRIKGLEFSALSAADIVAQSEVEVSTRDLFDLEKDRAPKANGALDPKMG- 59
Query: 167 ISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATS 226
+S C TC N C GH GH++L +PV + +F+ +L+ C C I +
Sbjct: 60 VSSSSLECATCHGNLASCHGHFGHLKLALPVFHIGYFKATIQILQGICKNCSAILLSEID 119
Query: 227 QLLFINQIK 235
+ F+++++
Sbjct: 120 KRQFLHELR 128
>gi|13274099|emb|CAC33856.1| RNA polymerase II largest subunit [Glugea anomala]
Length = 884
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 80/127 (62%), Gaps = 7/127 (5%)
Query: 483 LQYNVDLLMDAKL-----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVI 537
LQY+V LMD + ++ K+ + + L GK G IR N+MGKRV+F+ RSVI
Sbjct: 193 LQYHVATLMDNTIPGLPQSLQKS--GRPLKSISARLKGKEGRIRGNLMGKRVDFSARSVI 250
Query: 538 TPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
+PD L++D +GVPL+ AK T+P VT +N+ L+K++ NGP YPGAN + EDG +
Sbjct: 251 SPDSNLSLDEVGVPLQIAKIHTFPEKVTSFNLEKLQKLIDNGPFKYPGANFVTREDGQKI 310
Query: 598 RISSSQA 604
+ +++
Sbjct: 311 DLRYNKS 317
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 58/92 (63%), Gaps = 3/92 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PD L++D +GVPL+ AK T+P VT +N+ L+K++ NGP YPGAN +
Sbjct: 244 FSARSVISPDSNLSLDEVGVPLQIAKIHTFPEKVTSFNLEKLQKLIDNGPFKYPGANFVT 303
Query: 74 NEDGSVVRISSSQA---VQRESLAKRLITPED 102
EDG + + +++ + + +R +T ED
Sbjct: 304 REDGQKIDLRYNKSNLILTIGCIVERHMTSED 335
>gi|206601387|gb|ACI16412.1| RNA polymerase II largest subunit [Polyblastia fuscoargillacea]
Length = 358
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 73/114 (64%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G RQN+MGKRV+F+ R+VIT
Sbjct: 211 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRXRQNLMGKRVDFSARTVITG 270
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TLTYP VTP+N++ L+ +V GP+ +PGA I E+
Sbjct: 271 DPNLSLDEVGVPRSIARTLTYPETVTPFNISRLKYLVTRGPDNHPGARYIIREN 324
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N++ L+ +V GP+ +PGA I
Sbjct: 262 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPFNISRLKYLVTRGPDNHPGARYII 321
Query: 74 NED 76
E+
Sbjct: 322 REN 324
>gi|157741550|gb|ABV69480.1| RNA polymerase II largest subunit, partial [Thelidium decipiens]
Length = 977
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQ++MGKRV+F+ R+VIT
Sbjct: 211 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQSLMGKRVDFSARTVITG 270
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TLTYP VTP+N++ L+ ++I GP +PGA I E+
Sbjct: 271 DPNLSLDEVGVPRSIARTLTYPETVTPFNISKLKNLIIRGPENHPGARYIIREN 324
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N++ L+ ++I GP +PGA I
Sbjct: 262 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPFNISKLKNLIIRGPENHPGARYII 321
Query: 74 NED 76
E+
Sbjct: 322 REN 324
>gi|389744278|gb|EIM85461.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Stereum hirsutum FP-91666 SS1]
Length = 1404
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 75/126 (59%), Gaps = 1/126 (0%)
Query: 465 KGIRGDTLNNKLQNSWHELQYNVDLLMDAKL-NINKTTGAHQIDGLKQMLDGKTGMIRQN 523
+G+ +L W LQ +V + +++++ + G I G Q L GK G R N
Sbjct: 289 QGLAKGAPTAQLMEQWEFLQLSVGMYINSEMPGVPSQMGQKPIRGFCQRLKGKQGRFRGN 348
Query: 524 MMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVY 583
+ GKRV+F+GR+VI+PDP L ID + VP AK LTYP VT +N+ LRK V NG +V+
Sbjct: 349 LSGKRVDFSGRTVISPDPNLRIDEVAVPERVAKILTYPERVTGFNIDRLRKAVRNGCDVH 408
Query: 584 PGANMI 589
PGAN +
Sbjct: 409 PGANYV 414
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 40/59 (67%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 72
F R+VI+PDP L ID + VP AK LTYP VT +N+ LRK V NG +V+PGAN +
Sbjct: 356 FSGRTVISPDPNLRIDEVAVPERVAKILTYPERVTGFNIDRLRKAVRNGCDVHPGANYV 414
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 2/128 (1%)
Query: 109 MKEKIITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHT-IPGGLYDLAMGPI 167
MKE + + V + L+ Q+V ++S +V + + + G+ D +G
Sbjct: 1 MKETVSHKAPKVIKRLQFSTLNSQDVVKISEFQVTHRDLYTATDRVPVKDGVLDRRLG-T 59
Query: 168 SERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQ 227
SE+ C TCG N C GH +I+L VPV + +F+ +L+ C C ++ + +
Sbjct: 60 SEKNAFCETCGLNSVDCVGHYAYIKLVVPVFHIGYFKHTIGILQCICKTCARVLLEEPDR 119
Query: 228 LLFINQIK 235
+FI + +
Sbjct: 120 RVFIKRFR 127
>gi|241955144|ref|XP_002420293.1| DNA-directed RNA polymerase III subunit, putative [Candida
dubliniensis CD36]
gi|223643634|emb|CAX42517.1| DNA-directed RNA polymerase III subunit, putative [Candida
dubliniensis CD36]
Length = 1448
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 103/202 (50%), Gaps = 29/202 (14%)
Query: 403 MFI-RSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLS 461
M+I R L PP +RP M E I+++ +++ I
Sbjct: 254 MYIWRYLPAPPVCIRPSVMMDAQSNEDDLTVKLTEIVWTSSMIRAGI------------- 300
Query: 462 EALKGIRGDTLNNKLQNSWHELQYNVDLLMDA-KLNINKTTG------AHQIDGLKQMLD 514
++G ++NN L W LQ +V + +++ N +TG + I Q L
Sbjct: 301 -----VKGISINN-LMEQWDYLQLSVAMYINSDSANPALSTGGGGAKSSKPIRAFCQRLK 354
Query: 515 GKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRK 574
GK G R N+ GKRV+F+GR+VI+PDP L ID + VP AK LTYP T +N L+K
Sbjct: 355 GKQGRFRGNLSGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQK 414
Query: 575 MVINGPNVYPGAN--MIQNEDG 594
+++NGP+++PGAN M QNE G
Sbjct: 415 LIVNGPDIHPGANYVMKQNEPG 436
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 45/66 (68%), Gaps = 2/66 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGAN--M 71
F R+VI+PDP L ID + VP AK LTYP T +N L+K+++NGP+++PGAN M
Sbjct: 371 FSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQKLIVNGPDIHPGANYVM 430
Query: 72 IQNEDG 77
QNE G
Sbjct: 431 KQNEPG 436
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 158 GLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLC 217
G D MG IS C+TC N C GH GHI L +PV + +F+ + +L+ C C
Sbjct: 52 GALDTKMG-ISSNAQECSTCHGNLASCHGHFGHIRLALPVFHVGYFKSIISVLQCICKNC 110
Query: 218 HKINIPATSQLLFINQIK 235
+ + S+ ++N ++
Sbjct: 111 AAVLLDEQSKRQYLNDLR 128
>gi|9955855|dbj|BAB12227.1| RNA polymerase II largest subunit [Aspergillus oryzae]
gi|83767526|dbj|BAE57665.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391867452|gb|EIT76698.1| RNA polymerase II, large subunit [Aspergillus oryzae 3.042]
Length = 1748
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 82/133 (61%), Gaps = 7/133 (5%)
Query: 483 LQYNVDLLMDAKLNINKTTGAHQ-----IDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVI 537
LQY+V MD +I A Q + ++ L GK G +RQN+MGKRV+F+ R+VI
Sbjct: 311 LQYHVATYMDN--DIAGQPKAMQKSNRPVKAIRSRLKGKEGRLRQNLMGKRVDFSARTVI 368
Query: 538 TPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
T DP L++D +GVP A+TLTYP VTP+N+ L+++V NGPN +PGA I ++G +
Sbjct: 369 TGDPNLSLDEVGVPKSIARTLTYPEVVTPYNIDKLQQLVSNGPNEHPGARYIVRDNGERI 428
Query: 598 RISSSQAVQRESL 610
+ ++ + L
Sbjct: 429 DLRHAKRAGGQQL 441
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 52/80 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N+ L+++V NGPN +PGA I
Sbjct: 362 FSARTVITGDPNLSLDEVGVPKSIARTLTYPEVVTPYNIDKLQQLVSNGPNEHPGARYIV 421
Query: 74 NEDGSVVRISSSQAVQRESL 93
++G + + ++ + L
Sbjct: 422 RDNGERIDLRHAKRAGGQQL 441
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 3/116 (2%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTI-PGGLYDLAMGPISERGDPCTTCGNNYT 182
++ ++ +E+K++SVV V P T + GL D +G I + + C TC
Sbjct: 19 IQFGLFSPEEIKRMSVVHVEYPETMDEQRQRPRTKGLNDPRLGTIDRQWN-CETCEEGQK 77
Query: 183 KCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLD 238
+C GH GHIEL PV + F ++ LL+ C C KI TS F+ +++ D
Sbjct: 78 ECPGHFGHIELATPVFHIGFLTKIKKLLETVCHNCGKIKA-NTSDSKFLEALRMRD 132
>gi|83320466|gb|ABC02860.1| RNA polymerase II largest subunit, partial [Synchytrium
macrosporum]
Length = 808
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 79/127 (62%), Gaps = 7/127 (5%)
Query: 483 LQYNVDLLMDAKL-----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVI 537
LQY V LMD L ++ K+ I ++ L GK G +R N+MGKRV+F+ R+VI
Sbjct: 227 LQYQVATLMDNDLAGVPQSLQKSR--RPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVI 284
Query: 538 TPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
T DP L+ID +GVP AK +T+P VTP+N+ +L K V NGPN +PGA + ++G +
Sbjct: 285 TGDPNLSIDQVGVPRSIAKNMTFPEKVTPFNIEVLTKTVENGPNEHPGAKFVIRDNGDRI 344
Query: 598 RISSSQA 604
+ ++A
Sbjct: 345 DLRHARA 351
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 49/74 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L+ID +GVP AK +T+P VTP+N+ +L K V NGPN +PGA +
Sbjct: 278 FSARTVITGDPNLSIDQVGVPRSIAKNMTFPEKVTPFNIEVLTKTVENGPNEHPGAKFVI 337
Query: 74 NEDGSVVRISSSQA 87
++G + + ++A
Sbjct: 338 RDNGDRIDLRHARA 351
>gi|157741586|gb|ABV69498.1| RNA polymerase II largest subunit, partial [Verrucaria latebrosa]
Length = 355
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 211 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 270
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TLTYP VT +N++ L++ +I GP+ +PGA I E+
Sbjct: 271 DPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKQFIIRGPDNHPGARYIIREN 324
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 44/63 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N++ L++ +I GP+ +PGA I
Sbjct: 262 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKQFIIRGPDNHPGARYII 321
Query: 74 NED 76
E+
Sbjct: 322 REN 324
>gi|206601365|gb|ACI16401.1| RNA polymerase II largest subunit [Polyblastia melaspora]
Length = 354
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 211 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 270
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TLTYP VT +N++ L+++V GP ++PGA I E+
Sbjct: 271 DPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKELVTRGPEMHPGARYIIREN 324
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 44/63 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N++ L+++V GP ++PGA I
Sbjct: 262 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKELVTRGPEMHPGARYII 321
Query: 74 NED 76
E+
Sbjct: 322 REN 324
>gi|226876201|gb|ACO89421.1| RNA polymerase II largest subunit, partial [Chaetothyriales sp.
TRN1]
Length = 354
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 118/226 (52%), Gaps = 20/226 (8%)
Query: 390 VLDTTKELIATDIMFIRSLVVPPNNLRP-LSMEQMPPVEHSRNKLYQSILYSCGSLKSVI 448
++ +KE + +++L VPP +RP +S++ S + L ++ + +SV
Sbjct: 133 MMGLSKEYARPEWFILQALPVPPPAVRPSISVDGSGQGSRSEDDLTFKLVDIVRANQSVT 192
Query: 449 MAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMD---AKLNINKTTGAHQ 505
+ D E +K N+L + L+Y+V+ MD A L+ +
Sbjct: 193 RC-----EVDGTPEHIK--------NQLVDL---LEYHVNTYMDNEIAGLDKAQHKSGRP 236
Query: 506 IDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVT 565
+ ++ L GK G +RQN+MGKRV+F+ R+VIT DP L++D +GVP A+TLT+P VT
Sbjct: 237 VKAIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTFPETVT 296
Query: 566 PWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLA 611
+N+ L++ V NGP +PGA + E G + + ++ +LA
Sbjct: 297 QFNIDRLKRYVANGPTEHPGARYVIRESGERIDLRHAKKASEMNLA 342
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 49/81 (60%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLT+P VT +N+ L++ V NGP +PGA +
Sbjct: 262 FSARTVITGDPNLSLDEVGVPRSIARTLTFPETVTQFNIDRLKRYVANGPTEHPGARYVI 321
Query: 74 NEDGSVVRISSSQAVQRESLA 94
E G + + ++ +LA
Sbjct: 322 RESGERIDLRHAKKASEMNLA 342
>gi|206601352|gb|ACI16395.1| RNA polymerase II largest subunit [Polyblastia melaspora]
Length = 353
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 211 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 270
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TLTYP VT +N++ L+++V GP ++PGA I E+
Sbjct: 271 DPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKELVTRGPEMHPGARYIIREN 324
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 44/63 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N++ L+++V GP ++PGA I
Sbjct: 262 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKELVTRGPEMHPGARYII 321
Query: 74 NED 76
E+
Sbjct: 322 REN 324
>gi|224052370|ref|XP_002195476.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 isoform 1
[Taeniopygia guttata]
Length = 1390
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 80/141 (56%), Gaps = 4/141 (2%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
+ W LQ L ++++L+ A + G Q L GK G R N+ GKRV+F+G
Sbjct: 306 IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
R+VI+PDP L ID + VP+ AK LT+P V N+ +RK+V NGP+V+PGAN IQ
Sbjct: 366 RTVISPDPNLRIDEVAVPIHVAKILTFPEKVNKANINFMRKLVCNGPDVHPGANFIQQRH 425
Query: 594 GSVVRISSSQAVQRESLAKRL 614
+ R + RE +A+ L
Sbjct: 426 TQMKRF--LKYGNREKMAQEL 444
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP+ AK LT+P V N+ +RK+V NGP+V+PGAN IQ
Sbjct: 363 FSGRTVISPDPNLRIDEVAVPIHVAKILTFPEKVNKANINFMRKLVCNGPDVHPGANFIQ 422
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ R + RE +A+ L
Sbjct: 423 QRHTQMKRF--LKYGNREKMAQEL 444
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 61/115 (53%), Gaps = 3/115 (2%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+E++Q + ++V S ++ H P G+ D MG SE+ PC TCG + C GH G
Sbjct: 26 EEMRQQAHIQVVSKNLYSQDNHHSPLQYGVLDHRMG-TSEKDRPCETCGKSLADCLGHYG 84
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQ 244
+I+L +P + +F+ V +L++ C C +I + + F++ +K Y+ +
Sbjct: 85 YIDLELPCFHVGYFKAVIGILQMICKTCCRIMLSVEEKKQFLDYLKRPGLAYLQK 139
>gi|449504974|ref|XP_004174828.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 isoform 2
[Taeniopygia guttata]
Length = 1369
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 80/141 (56%), Gaps = 4/141 (2%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
+ W LQ L ++++L+ A + G Q L GK G R N+ GKRV+F+G
Sbjct: 285 IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 344
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
R+VI+PDP L ID + VP+ AK LT+P V N+ +RK+V NGP+V+PGAN IQ
Sbjct: 345 RTVISPDPNLRIDEVAVPIHVAKILTFPEKVNKANINFMRKLVCNGPDVHPGANFIQQRH 404
Query: 594 GSVVRISSSQAVQRESLAKRL 614
+ R + RE +A+ L
Sbjct: 405 TQMKRF--LKYGNREKMAQEL 423
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP+ AK LT+P V N+ +RK+V NGP+V+PGAN IQ
Sbjct: 342 FSGRTVISPDPNLRIDEVAVPIHVAKILTFPEKVNKANINFMRKLVCNGPDVHPGANFIQ 401
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ R + RE +A+ L
Sbjct: 402 QRHTQMKRF--LKYGNREKMAQEL 423
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 61/115 (53%), Gaps = 3/115 (2%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+E++Q + ++V S ++ H P G+ D MG SE+ PC TCG + C GH G
Sbjct: 5 EEMRQQAHIQVVSKNLYSQDNHHSPLQYGVLDHRMG-TSEKDRPCETCGKSLADCLGHYG 63
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQ 244
+I+L +P + +F+ V +L++ C C +I + + F++ +K Y+ +
Sbjct: 64 YIDLELPCFHVGYFKAVIGILQMICKTCCRIMLSVEEKKQFLDYLKRPGLAYLQK 118
>gi|83320420|gb|ABC02837.1| RNA polymerase II largest subunit, partial [Rozella allomycis]
Length = 809
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 71/105 (67%), Gaps = 2/105 (1%)
Query: 513 LDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLL 572
L GK G +R N+MGKRV+F+ R+VITPDP L++D +GVP AKTLTYP VTP+N+ L
Sbjct: 63 LKGKEGRLRGNLMGKRVDFSARTVITPDPNLSLDQVGVPRTIAKTLTYPEIVTPYNIEYL 122
Query: 573 RKMVINGPNVYPGANMIQNEDGSVV--RISSSQAVQRESLAKRLI 615
+K+V NGP +PGA + +DG+ + R + +Q L +R I
Sbjct: 123 QKLVNNGPTEHPGARYVVRDDGNRIDLRFKTDVVLQPGYLVERHI 167
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 57/91 (62%), Gaps = 2/91 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L++D +GVP AKTLTYP VTP+N+ L+K+V NGP +PGA +
Sbjct: 81 FSARTVITPDPNLSLDQVGVPRTIAKTLTYPEIVTPYNIEYLQKLVNNGPTEHPGARYVV 140
Query: 74 NEDGSVV--RISSSQAVQRESLAKRLITPED 102
+DG+ + R + +Q L +R I D
Sbjct: 141 RDDGNRIDLRFKTDVVLQPGYLVERHINDGD 171
>gi|206601354|gb|ACI16396.1| RNA polymerase II largest subunit [Polyblastia sp. Tibell 23635]
Length = 356
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 73/114 (64%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 211 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 270
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+ LTYP VTP+N++ L+ ++I GP +PGA I E+
Sbjct: 271 DPNLSLDEVGVPRSIARNLTYPETVTPFNISKLKNLIIRGPENHPGARYIIREN 324
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+ LTYP VTP+N++ L+ ++I GP +PGA I
Sbjct: 262 FSARTVITGDPNLSLDEVGVPRSIARNLTYPETVTPFNISKLKNLIIRGPENHPGARYII 321
Query: 74 NED 76
E+
Sbjct: 322 REN 324
>gi|125657576|gb|ABN48851.1| RNA polymerase II largest subunit [Globigerinella siphonifera]
Length = 460
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 115/424 (27%), Positives = 177/424 (41%), Gaps = 85/424 (20%)
Query: 183 KCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYV 242
+C GH GHIEL P + F +L+ C C S LL ++
Sbjct: 1 ECPGHFGHIELARPCYHVGFLSITLRVLRCVCHYC--------SNLLCYDR--------- 43
Query: 243 TQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQ 302
D +T EN R +++ L + + G +I D K G +
Sbjct: 44 --NSDAFKTALKIENKRERMIEILHLCEK--KKRCGRGDQI----DAKLGNSGDQNPEEE 95
Query: 303 VLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQG 362
R VK +C A+ + RK KI+ + D K + RKR+
Sbjct: 96 DAER-VKFQC-------GALQPKYRKGA-GVKIEVEFPD--------KDGSGEDRKRD-- 136
Query: 363 YVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLS-ME 421
+ A E FK++ + + VL + D + IR L V P +RP M+
Sbjct: 137 -LSAQECYNIFKRISEED-------LAVLGFDSQYSPPDWLLIRVLPVSPPAVRPFVLMD 188
Query: 422 QMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWH 481
M P + I+ + +LK + +G+ L ++
Sbjct: 189 GMRPSQDDLTHKVYDIMKTHNALKR---------------QEARGVPEHVLEELVE---- 229
Query: 482 ELQYNVDLLMDAKLNINKTTGAHQ--------IDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
LQ++V +MD N+ TG Q I L++ L GK G +R N+MGKR +F+
Sbjct: 230 LLQFHVTTMMD-----NEVTGQPQAKQKSGKPIKSLRERLVGKAGRVRGNLMGKRCDFSA 284
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
R+VI DP L+ID +GVP A +LTYP VT +N+ ++++V NGPN +PGA I +D
Sbjct: 285 RTVIGGDPNLSIDQVGVPRSIALSLTYPERVTKFNLHRMKQLVENGPNEHPGAKTIIRDD 344
Query: 594 GSVV 597
G +
Sbjct: 345 GKQI 348
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 44/67 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI DP L+ID +GVP A +LTYP VT +N+ ++++V NGPN +PGA I
Sbjct: 282 FSARTVIGGDPNLSIDQVGVPRSIALSLTYPERVTKFNLHRMKQLVENGPNEHPGAKTII 341
Query: 74 NEDGSVV 80
+DG +
Sbjct: 342 RDDGKQI 348
>gi|451770412|ref|NP_001263425.1| DNA-directed RNA polymerase III subunit RPC1 [Danio rerio]
Length = 1390
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 80/141 (56%), Gaps = 4/141 (2%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
+ W LQ L ++++L+ A + G Q L GK G R N+ GKRV+F+G
Sbjct: 306 IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
R+VI+PDP L ID + VP+ AK LTYP V N+ L+RK+V NGP V+PGAN IQ
Sbjct: 366 RTVISPDPNLRIDEVAVPVHVAKILTYPEKVNKANIELMRKLVRNGPEVHPGANFIQQRH 425
Query: 594 GSVVRISSSQAVQRESLAKRL 614
+ R + RE +A+ L
Sbjct: 426 MQMKRF--LKYGNREKMAQEL 444
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP+ AK LTYP V N+ L+RK+V NGP V+PGAN IQ
Sbjct: 363 FSGRTVISPDPNLRIDEVAVPVHVAKILTYPEKVNKANIELMRKLVRNGPEVHPGANFIQ 422
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ R + RE +A+ L
Sbjct: 423 QRHMQMKRF--LKYGNREKMAQEL 444
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 158 GLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLC 217
G+ D MG SE+ PC TCG N C GH G+++L +P + +F+ + +L++ C C
Sbjct: 54 GVLDHRMG-TSEKDRPCETCGKNLADCLGHYGYLDLELPCFHIGYFKAIVGILQMICKTC 112
Query: 218 HKINIPATSQLLFINQIKLLDAGYVTQ 244
I + +L F++ ++ Y+ +
Sbjct: 113 SHILLTKEEKLQFLDYLRRPGLAYLQK 139
>gi|206601340|gb|ACI16389.1| RNA polymerase II largest subunit [Polyblastia melaspora]
Length = 392
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 230 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 289
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TLTYP VT +N++ L+++V GP ++PGA I E+
Sbjct: 290 DPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKELVTRGPEMHPGARYIIREN 343
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 44/63 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N++ L+++V GP ++PGA I
Sbjct: 281 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKELVTRGPEMHPGARYII 340
Query: 74 NED 76
E+
Sbjct: 341 REN 343
>gi|357289799|gb|AET73112.1| RNA polymerase II largest subunit [Phaeocystis globosa virus 12T]
gi|357292599|gb|AET73935.1| RNA polymerase II largest subunit [Phaeocystis globosa virus 14T]
Length = 1512
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/143 (41%), Positives = 87/143 (60%), Gaps = 9/143 (6%)
Query: 473 NNKLQNSWHE-LQYNVDLLMDAKL----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGK 527
N+ + + W LQY V L+D K+ + + +G + +K L+GK G +R N+MGK
Sbjct: 276 NSNVIDDWSTVLQYYVATLVDNKIPGVAAVAQRSG-RPLKAIKDRLNGKGGRVRGNLMGK 334
Query: 528 RVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGAN 587
RV+F+ RSVITPDP L+I +GVPL+ AK LT PV V N L + NGP+VYPGA
Sbjct: 335 RVDFSARSVITPDPNLSISELGVPLKIAKNLTKPVTVNSRNKQYLMTFIKNGPDVYPGAK 394
Query: 588 MIQNEDGSVVRISSSQAVQRESL 610
+ + ++G + S + V R+S+
Sbjct: 395 IYEKKNGDCI---SLRYVDRDSI 414
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 58/96 (60%), Gaps = 6/96 (6%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVITPDP L+I +GVPL+ AK LT PV V N L + NGP+VYPGA + +
Sbjct: 338 FSARSVITPDPNLSISELGVPLKIAKNLTKPVTVNSRNKQYLMTFIKNGPDVYPGAKIYE 397
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIM 109
++G + S + V R+S+ ++ D+ HR ++
Sbjct: 398 KKNGDCI---SLRYVDRDSI---VLEDGDKVHRHVL 427
Score = 46.6 bits (109), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHI 191
E+++ SV ++ + T+ + + GGL+D MG I E G C T G +Y + G+ GHI
Sbjct: 23 HEIQKGSVAEIVNRDTYIN-NKPVLGGLFDPRMG-ILEPGFICPTDGLDYIQTPGYFGHI 80
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFIN 232
L PV + + +L+ C C K+ I +N
Sbjct: 81 NLARPVFYIQYLTTIMKILRCVCIKCSKLLIDKDKYSYLLN 121
>gi|167385199|ref|XP_001737245.1| DNA-directed RNA polymerase III subunit RPC1 [Entamoeba dispar
SAW760]
gi|165900031|gb|EDR26493.1| DNA-directed RNA polymerase III subunit RPC1, putative [Entamoeba
dispar SAW760]
Length = 1379
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 79/137 (57%), Gaps = 1/137 (0%)
Query: 478 NSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVI 537
+SW +L V + +++ L G + + Q L GK G R N++GKRV+F+GR+VI
Sbjct: 325 DSWDQLTIAVSMFINSDLPGCDDKGK-PLRSICQRLKGKHGRFRGNLLGKRVDFSGRTVI 383
Query: 538 TPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
+PDP L+I+ IGVP A LTYP VT N+ LR++VING N+YPG N I +
Sbjct: 384 SPDPNLDIEQIGVPKLMAIKLTYPERVTKHNIDKLRQLVINGSNIYPGCNSIIGGTDGLR 443
Query: 598 RISSSQAVQRESLAKRL 614
R + RE AK L
Sbjct: 444 RSMCIKLEMREKFAKDL 460
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 49/84 (58%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L+I+ IGVP A LTYP VT N+ LR++VING N+YPG N I
Sbjct: 377 FSGRTVISPDPNLDIEQIGVPKLMAIKLTYPERVTKHNIDKLRQLVINGSNIYPGCNSII 436
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ R + RE AK L
Sbjct: 437 GGTDGLRRSMCIKLEMREKFAKDL 460
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 156 PGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCF 215
P G+ D +G + + C TCG +C GH I L +PV + FFR + +L+ C
Sbjct: 70 PNGVLDRRLG-VCDSLSVCETCGKRIEECSGHFAVINLELPVFHIGFFRPIIQVLQCVCK 128
Query: 216 LCHKINIPATSQLLFINQIK 235
C++I + + ++ +++
Sbjct: 129 NCNRILLTNEERDFYLRRMR 148
>gi|120561172|gb|ABM26981.1| RNA polymerase II largest subunit [Nosema trichoplusiae]
Length = 989
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 109/218 (50%), Gaps = 34/218 (15%)
Query: 390 VLDTTKELIATDIMFIRS-------LVVPPNNLRP-LSMEQMPPVEHSRNKLYQSILYSC 441
+ D E++ D+ + R L+VPP ++RP + ME M E I+ S
Sbjct: 110 ISDEDIEVLGFDLAYSRPEWLILTVLLVPPPSVRPSIVMEGMLRAEDDLTHKLSDIIKSN 169
Query: 442 GSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTT 501
LK M +G G + + Q LQ++V L+D +I+
Sbjct: 170 TYLKKYEM---------------EGAPGHIIRDYEQ----LLQFHVATLIDN--DISGQP 208
Query: 502 GAHQIDG-----LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAK 556
A Q G + L GK G +R N+MGKRV+F+ RSVIT D ++++ +GVPLE AK
Sbjct: 209 QALQKSGRPLKSISARLKGKEGRVRGNLMGKRVDFSARSVITADANISLEEVGVPLEVAK 268
Query: 557 TLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDG 594
T+P +TP+N+ L K+V NGPN YPGAN + DG
Sbjct: 269 IHTFPEKITPFNIEKLEKLVANGPNEYPGANYVIRTDG 306
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 44/64 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVIT D ++++ +GVPLE AK T+P +TP+N+ L K+V NGPN YPGAN +
Sbjct: 243 FSARSVITADANISLEEVGVPLEVAKIHTFPEKITPFNIEKLEKLVANGPNEYPGANYVI 302
Query: 74 NEDG 77
DG
Sbjct: 303 RTDG 306
>gi|312273885|gb|ADQ57312.1| RNA polymerase II largest subunit, partial [Nosema sp. CPP 04-02]
Length = 988
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 109/218 (50%), Gaps = 34/218 (15%)
Query: 390 VLDTTKELIATDIMFIRS-------LVVPPNNLRP-LSMEQMPPVEHSRNKLYQSILYSC 441
+ D E++ D+ + R L+VPP ++RP + ME M E I+ S
Sbjct: 109 ISDEDIEVLGFDLAYSRPEWLILTVLLVPPPSVRPSIVMEGMLRAEDDLTHKLSDIIKSN 168
Query: 442 GSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTT 501
LK M +G G + + Q LQ++V L+D +I+
Sbjct: 169 TYLKKYEM---------------EGAPGHIIRDYEQ----LLQFHVATLIDN--DISGQP 207
Query: 502 GAHQIDG-----LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAK 556
A Q G + L GK G +R N+MGKRV+F+ RSVIT D ++++ +GVPLE AK
Sbjct: 208 QALQKSGRPLKSISARLKGKEGRVRGNLMGKRVDFSARSVITADANISLEEVGVPLEVAK 267
Query: 557 TLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDG 594
T+P +TP+N+ L K+V NGPN YPGAN + DG
Sbjct: 268 IHTFPEKITPFNIEKLEKLVANGPNEYPGANYVIRTDG 305
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 44/64 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVIT D ++++ +GVPLE AK T+P +TP+N+ L K+V NGPN YPGAN +
Sbjct: 242 FSARSVITADANISLEEVGVPLEVAKIHTFPEKITPFNIEKLEKLVANGPNEYPGANYVI 301
Query: 74 NEDG 77
DG
Sbjct: 302 RTDG 305
>gi|157741568|gb|ABV69489.1| RNA polymerase II largest subunit, partial [Bagliettoa sp. AFTOL
2229]
Length = 364
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/110 (46%), Positives = 71/110 (64%), Gaps = 3/110 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 212 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 271
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 589
DP L++D +GVP AKTLTYP VT +N+ L++ V+ GP+ +PGA I
Sbjct: 272 DPNLSLDEVGVPRSIAKTLTYPETVTRYNMEKLKQFVVTGPDSHPGARFI 321
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 41/59 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 72
F R+VIT DP L++D +GVP AKTLTYP VT +N+ L++ V+ GP+ +PGA I
Sbjct: 263 FSARTVITGDPNLSLDEVGVPRSIAKTLTYPETVTRYNMEKLKQFVVTGPDSHPGARFI 321
>gi|226876181|gb|ACO89411.1| RNA polymerase II largest subunit, partial [Exophiala castellanii]
Length = 352
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 73/118 (61%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY++ MD A L + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 207 LQYHIATYMDNEIAGLGKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 266
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L++D +GVP A+TLTYP VTP+N+ L+++V GP +PGA + + G +
Sbjct: 267 DPNLSLDEVGVPRSIARTLTYPETVTPFNIEKLKRLVAAGPAEHPGARYVIRDTGERI 324
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 44/67 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N+ L+++V GP +PGA +
Sbjct: 258 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPFNIEKLKRLVAAGPAEHPGARYVI 317
Query: 74 NEDGSVV 80
+ G +
Sbjct: 318 RDTGERI 324
>gi|120561166|gb|ABM26978.1| RNA polymerase II largest subunit [Nosema bombycis]
Length = 982
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 109/218 (50%), Gaps = 34/218 (15%)
Query: 390 VLDTTKELIATDIMFIRS-------LVVPPNNLRP-LSMEQMPPVEHSRNKLYQSILYSC 441
+ D E++ D+ + R L+VPP ++RP + ME M E I+ S
Sbjct: 110 ISDEDIEVLGFDLAYSRPEWLILTVLLVPPPSVRPSIVMEGMLRAEDDLTHKLSDIIKSN 169
Query: 442 GSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTT 501
LK M +G G + + Q LQ++V L+D +I+
Sbjct: 170 TYLKKYEM---------------EGAPGHIIRDYEQ----LLQFHVATLIDN--DISGQP 208
Query: 502 GAHQIDG-----LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAK 556
A Q G + L GK G +R N+MGKRV+F+ RSVIT D ++++ +GVPLE AK
Sbjct: 209 QALQKSGRPLKSISARLKGKEGRVRGNLMGKRVDFSARSVITADANISLEEVGVPLEVAK 268
Query: 557 TLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDG 594
T+P +TP+N+ L K+V NGPN YPGAN + DG
Sbjct: 269 IHTFPEKITPFNIEKLEKLVANGPNEYPGANYVIRTDG 306
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 44/64 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVIT D ++++ +GVPLE AK T+P +TP+N+ L K+V NGPN YPGAN +
Sbjct: 243 FSARSVITADANISLEEVGVPLEVAKIHTFPEKITPFNIEKLEKLVANGPNEYPGANYVI 302
Query: 74 NEDG 77
DG
Sbjct: 303 RTDG 306
>gi|336041419|gb|AEH95287.1| RNA polymerase II largest subunit [Malawimonas jakobiformis]
Length = 1042
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 78/120 (65%), Gaps = 6/120 (5%)
Query: 480 WHELQYNVDLLMDAKLN-----INKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGR 534
W LQY+V +++ ++ + K +G + ++ L GK G IR N+MGKRV+F+ R
Sbjct: 228 WLMLQYHVANIIETDISGFPKPVQKGSG-RVLKSIRSRLKGKHGRIRGNLMGKRVDFSAR 286
Query: 535 SVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDG 594
SVIT DP L+++ +GVP A LTYP VTP+N+ +R++V NGP+ +PGAN + EDG
Sbjct: 287 SVITADPNLSVNEVGVPRTIALNLTYPETVTPFNIQRMRQLVENGPHKHPGANYVIREDG 346
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 45/64 (70%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVIT DP L+++ +GVP A LTYP VTP+N+ +R++V NGP+ +PGAN +
Sbjct: 283 FSARSVITADPNLSVNEVGVPRTIALNLTYPETVTPFNIQRMRQLVENGPHKHPGANYVI 342
Query: 74 NEDG 77
EDG
Sbjct: 343 REDG 346
>gi|58267574|ref|XP_570943.1| DNA-directed RNA polymerase ii largest subunit [Cryptococcus
neoformans var. neoformans JEC21]
gi|134112243|ref|XP_775097.1| hypothetical protein CNBE3710 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257749|gb|EAL20450.1| hypothetical protein CNBE3710 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57227177|gb|AAW43636.1| DNA-directed RNA polymerase ii largest subunit, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 1786
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 72/120 (60%), Gaps = 3/120 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L ++ G I ++ L GK G +R N+MGKRV+F+ R+VIT
Sbjct: 312 LQYHVCTYMDNDIAGLPRDQQKGGRAIKAIRARLKGKEGRMRGNLMGKRVDFSARTVITG 371
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
DP L +D +GVP A TLTYP VTP+N+ L+ +V NGP YPGA + G V +
Sbjct: 372 DPNLQLDQVGVPKSIAMTLTYPERVTPYNIVYLQTLVNNGPATYPGARYYVKDTGERVDL 431
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 42/69 (60%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L +D +GVP A TLTYP VTP+N+ L+ +V NGP YPGA
Sbjct: 363 FSARTVITGDPNLQLDQVGVPKSIAMTLTYPERVTPYNIVYLQTLVNNGPATYPGARYYV 422
Query: 74 NEDGSVVRI 82
+ G V +
Sbjct: 423 KDTGERVDL 431
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHI 191
+E+K SV K+ S + G GGL D MG I +R C TC ++C GH GHI
Sbjct: 26 EEIKAFSVAKIESTEVLDENGKQKVGGLMDPKMGTI-DRNFKCQTCLEGMSECPGHFGHI 84
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKINI 222
EL PV + F V+ +L+ C+ C K+ +
Sbjct: 85 ELARPVFHQGFIVKVKKILECVCYSCGKLKV 115
>gi|397135846|gb|AFO11418.1| RNA polymerase I, partial [Kluyveromyces marxianus]
Length = 871
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 80/136 (58%), Gaps = 13/136 (9%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQ--------IDGLKQMLDGKTGMIRQNMMGK 527
+Q S LQ++V MD N G Q I ++ L GK G IR N+MGK
Sbjct: 102 IQESESLLQFHVATYMD-----NDIAGQPQAVQKSGRPIKSIRARLKGKEGRIRGNLMGK 156
Query: 528 RVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGAN 587
RV+F+ R+VI+ DP L++D +GVP AKTLTYP VTP+N+ L ++V NGPN +PGA
Sbjct: 157 RVDFSARTVISGDPNLDLDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAK 216
Query: 588 MIQNEDGSVVRISSSQ 603
+ E+G + + S+
Sbjct: 217 YVIRENGDRIDLRYSK 232
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 49/73 (67%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+ DP L++D +GVP AKTLTYP VTP+N+ L ++V NGPN +PGA +
Sbjct: 160 FSARTVISGDPNLDLDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVI 219
Query: 74 NEDGSVVRISSSQ 86
E+G + + S+
Sbjct: 220 RENGDRIDLRYSK 232
>gi|384497273|gb|EIE87764.1| hypothetical protein RO3G_12475 [Rhizopus delemar RA 99-880]
Length = 1273
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 77/128 (60%), Gaps = 2/128 (1%)
Query: 468 RGDTLNNKLQNSWHELQYNVDLLMDAKL-NINKTTGAHQIDGLKQMLDGKTGMIRQNMMG 526
RG T+ N L W LQ L +++++ + T GL Q L GK G R N+ G
Sbjct: 258 RGVTVMN-LMEQWEFLQLAAALYINSEMPGVLNATSGKPTRGLCQRLKGKQGRFRGNLSG 316
Query: 527 KRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGA 586
KRV+F+GR+VI+PDP + ID + VP AK LT+P V N+ LR+ VINGP V+PGA
Sbjct: 317 KRVDFSGRTVISPDPNMRIDQVAVPERVAKVLTFPERVNRHNIHKLRQNVINGPFVHPGA 376
Query: 587 NMIQNEDG 594
N ++ ++G
Sbjct: 377 NYVEKQNG 384
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 43/64 (67%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP + ID + VP AK LT+P V N+ LR+ VINGP V+PGAN ++
Sbjct: 321 FSGRTVISPDPNMRIDQVAVPERVAKVLTFPERVNRHNIHKLRQNVINGPFVHPGANYVE 380
Query: 74 NEDG 77
++G
Sbjct: 381 KQNG 384
>gi|111278793|gb|ABH09094.1| RNA polymerase II largest subunit [Capronia pilosella]
Length = 1001
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 75/118 (63%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY++ MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 223 LQYHIATYMDNEIAGLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 282
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L++D +GVP A+TLT+P VT +NV L+ +V NGPNV+PGA + + G +
Sbjct: 283 DPNLSLDEVGVPRSIARTLTFPETVTRFNVEKLKVLVKNGPNVHPGARYVIRDTGERI 340
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 45/67 (67%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLT+P VT +NV L+ +V NGPNV+PGA +
Sbjct: 274 FSARTVITGDPNLSLDEVGVPRSIARTLTFPETVTRFNVEKLKVLVKNGPNVHPGARYVI 333
Query: 74 NEDGSVV 80
+ G +
Sbjct: 334 RDTGERI 340
>gi|418204404|gb|AFX61756.1| RNA polymerase I largest subunit, partial [Ascosphaera variegata]
Length = 1683
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 79/125 (63%), Gaps = 7/125 (5%)
Query: 470 DTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQ-----IDGLKQMLDGKTGMIRQNM 524
D + + LQ LQY+V MD +I A Q + ++ L GK G +RQN+
Sbjct: 277 DGVGHGLQEFEALLQYHVATYMDN--DIAGQPKAMQKSNRPVKAIRGRLKGKEGRLRQNL 334
Query: 525 MGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYP 584
MGKRV+F+ R+VIT DP L++D +GVP+ A+TLTY VTP+N++ L +MV NGPN++P
Sbjct: 335 MGKRVDFSARTVITGDPNLSLDEVGVPVSIARTLTYTEVVTPYNISKLVQMVNNGPNIHP 394
Query: 585 GANMI 589
GA I
Sbjct: 395 GAKYI 399
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 44/59 (74%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 72
F R+VIT DP L++D +GVP+ A+TLTY VTP+N++ L +MV NGPN++PGA I
Sbjct: 341 FSARTVITGDPNLSLDEVGVPVSIARTLTYTEVVTPYNISKLVQMVNNGPNIHPGAKYI 399
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 133 EVKQLSVVKVFSPITFNSLGHT-IPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHI 191
E+K++SVVK+ P T + GL D +G I +R C TC C GH GHI
Sbjct: 10 EIKKMSVVKIVYPETMDDQRQRPREEGLNDPKLGTI-DRAFKCATCEQGIMDCPGHFGHI 68
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKINIPAT 225
EL PV + F ++ LL+ C C KI T
Sbjct: 69 ELASPVFHIGFLTKIKKLLETVCINCGKIKADMT 102
>gi|157741598|gb|ABV69504.1| RNA polymerase II largest subunit, partial [Verrucaria muralis]
Length = 999
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 222 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 281
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TLTYP VT +N++ L+++V GP ++PGA I E+
Sbjct: 282 DPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKELVTRGPEMHPGARYIIREN 335
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 44/63 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N++ L+++V GP ++PGA I
Sbjct: 273 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKELVTRGPEMHPGARYII 332
Query: 74 NED 76
E+
Sbjct: 333 REN 335
>gi|336041421|gb|AEH95288.1| RNA polymerase II largest subunit [Malawimonas californiana]
Length = 1014
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 106/415 (25%), Positives = 180/415 (43%), Gaps = 96/415 (23%)
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLE 249
HIEL PV + F + + +++ CF C ++ L
Sbjct: 1 HIELSKPVFHMGFVKTIVKVMRCLCFFCSRL---------------------------LT 33
Query: 250 ETLFNEENLRLHPAQLVQLVDSHVQSILA--HGTKICDI-NDYKGGEELRSAFVAQVLSR 306
+T V+L + V LA G +C+ +D K G E +A S
Sbjct: 34 DT--------------VRLCAASVPLCLAACRGRHVCESGDDMKPGAE--NADHTGAGSA 77
Query: 307 HVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGY-VM 365
K C I + + K++ FK D+ ++++ +I+ E+ Y ++
Sbjct: 78 KPKVNHGGCGNVQPKIMFSEWKMVAEFKADE----------ADQAARKIVLTPEKVYNIL 127
Query: 366 ASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRP-LSMEQMP 424
+ + D K + N PVL + ++ T L VPP +RP + M+
Sbjct: 128 KNVSDEDSKAMGFN---------PVLARPEWMLTT------VLPVPPPAVRPSIVMDSAR 172
Query: 425 PVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQ 484
E I+ + +LK L+ RG + +Q LQ
Sbjct: 173 AAEDDLTYKLSDIVKANNNLK------------------LQLERG-AAPHIIQEFTQLLQ 213
Query: 485 YNVDLLMDAKLN---INKTTGAHQ-IDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPD 540
Y++ ++D ++ ++ G+ + + ++Q L GK G IR N+MGKRV+F+ R+VITPD
Sbjct: 214 YHIATMLDNEMPGMPVSSQRGSGRPLKSIRQRLRGKHGRIRGNLMGKRVDFSARTVITPD 273
Query: 541 PYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGS 595
P L+++ +GVP A LTYP VTP+N+ +R+++ NGP +PGA I +DG+
Sbjct: 274 PNLSVNEVGVPRTIALNLTYPEVVTPYNIARMRQLIENGPMKHPGAKYILRDDGT 328
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 45/65 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+++ +GVP A LTYP VTP+N+ +R+++ NGP +PGA I
Sbjct: 264 FSARTVITPDPNLSVNEVGVPRTIALNLTYPEVVTPYNIARMRQLIENGPMKHPGAKYIL 323
Query: 74 NEDGS 78
+DG+
Sbjct: 324 RDDGT 328
>gi|21228373|ref|NP_634295.1| DNA-directed RNA polymerase subunit A' [Methanosarcina mazei Go1]
gi|452210796|ref|YP_007490910.1| DNA-directed RNA polymerase subunit A' [Methanosarcina mazei Tuc01]
gi|20906843|gb|AAM31967.1| DNA-directed RNA polymerase subunit A' [Methanosarcina mazei Go1]
gi|452100698|gb|AGF97638.1| DNA-directed RNA polymerase subunit A' [Methanosarcina mazei Tuc01]
Length = 880
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 85/142 (59%), Gaps = 6/142 (4%)
Query: 476 LQNSWHELQYNVDLLMDAKLN---INKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFA 532
+++ W LQY+V D ++ + + L Q L GK G R ++ GKRVNF+
Sbjct: 262 IEDLWELLQYHVTTFFDNSVSGIPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNFS 321
Query: 533 GRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
R+VI+PDP L+I+ +GVP+ AK LT P VTP N+ L+ V NG +++PGAN +
Sbjct: 322 ARTVISPDPNLSINEVGVPMPIAKILTMPAVVTPRNIEQLKVYVRNGEDIHPGANYVFRS 381
Query: 593 DGSVVRISSSQAVQRESLAKRL 614
DG +++++ + +E LA++L
Sbjct: 382 DGRRIKVTN---MNKEDLAEKL 400
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 56/84 (66%), Gaps = 3/84 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L+I+ +GVP+ AK LT P VTP N+ L+ V NG +++PGAN +
Sbjct: 320 FSARTVISPDPNLSINEVGVPMPIAKILTMPAVVTPRNIEQLKVYVRNGEDIHPGANYVF 379
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
DG +++++ + +E LA++L
Sbjct: 380 RSDGRRIKVTN---MNKEDLAEKL 400
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 62/115 (53%), Gaps = 1/115 (0%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
+K + +E++++S + + T++ G I GL D +G I + G C TC +
Sbjct: 14 IKFGLMSPKEIRKMSATPIITADTYDDDGFPIDMGLMDTKLGVI-DPGLRCKTCSGRAGE 72
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLD 238
C GH GHIEL PV++ F + ++ LL+ +C C KI + + F++Q+ ++
Sbjct: 73 CPGHFGHIELVAPVVHVGFNKVIRKLLRATCRKCSKILLEPAQKQQFLDQLTAVE 127
>gi|50310581|ref|XP_455310.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644446|emb|CAG98018.1| KLLA0F05071p [Kluyveromyces lactis]
Length = 1720
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 79/136 (58%), Gaps = 13/136 (9%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQ--------IDGLKQMLDGKTGMIRQNMMGK 527
+Q S LQ++V MD N G Q I ++ L GK G IR N+MGK
Sbjct: 289 IQESESLLQFHVATYMD-----NDIAGQPQAVQKSGRPIKSIRARLKGKEGRIRGNLMGK 343
Query: 528 RVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGAN 587
RV+F+ R+VI+ DP L++D +GVP AKTLTYP VTP+N+ L ++V NGPN +PGA
Sbjct: 344 RVDFSARTVISGDPNLDLDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAK 403
Query: 588 MIQNEDGSVVRISSSQ 603
+ E G + + S+
Sbjct: 404 YVIRESGDRIDLRYSK 419
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 48/73 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+ DP L++D +GVP AKTLTYP VTP+N+ L ++V NGPN +PGA +
Sbjct: 347 FSARTVISGDPNLDLDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVI 406
Query: 74 NEDGSVVRISSSQ 86
E G + + S+
Sbjct: 407 RESGDRIDLRYSK 419
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 2/98 (2%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFN-SLGHTIPGGLYDLAMGPISERGDPCTTCGNNYT 182
++ ++ +EV+ +SV K+ P T + S GGL D +G I +R C TCG
Sbjct: 17 VQFGLFSPEEVRGISVAKIEFPETMDESQMKAKIGGLNDPRLGSI-DRNYKCQTCGEGMA 75
Query: 183 KCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKI 220
+C GH GHIEL PV + F ++ + + C C K+
Sbjct: 76 ECPGHFGHIELAKPVFHIGFLSKIKKVCESVCMHCGKL 113
>gi|397135852|gb|AFO11421.1| RNA polymerase I, partial [Hanseniaspora valbyensis]
Length = 871
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 75/123 (60%), Gaps = 13/123 (10%)
Query: 483 LQYNVDLLMDAKLNINKTTGAHQ--------IDGLKQMLDGKTGMIRQNMMGKRVNFAGR 534
LQY+V MD N G Q + ++ L GK G IR N+MGKRV+F+ R
Sbjct: 109 LQYHVATYMD-----NDIAGQPQALQKSGRPVKSIRARLKGKEGRIRSNLMGKRVDFSAR 163
Query: 535 SVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDG 594
+VI+ DP L +D +GVPL AKTLTYP VTP+N+ L ++V NGPN +PGA + ++G
Sbjct: 164 TVISGDPNLELDQVGVPLSIAKTLTYPEIVTPYNIDRLTQLVKNGPNQHPGAKYVIRDNG 223
Query: 595 SVV 597
+ +
Sbjct: 224 TRI 226
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 47/67 (70%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+ DP L +D +GVPL AKTLTYP VTP+N+ L ++V NGPN +PGA +
Sbjct: 160 FSARTVISGDPNLELDQVGVPLSIAKTLTYPEIVTPYNIDRLTQLVKNGPNQHPGAKYVI 219
Query: 74 NEDGSVV 80
++G+ +
Sbjct: 220 RDNGTRI 226
>gi|336260159|ref|XP_003344876.1| hypothetical protein SMAC_06162 [Sordaria macrospora k-hell]
gi|380089075|emb|CCC13019.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1474
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 101/197 (51%), Gaps = 23/197 (11%)
Query: 403 MFI-RSLVVPPNNLRPLSMEQMPPVEHS-RNKLYQSILYSCGSLKSVIMAMKNKEQSDLL 460
MF+ + L PP +RP ++ E +KL + ILY+ G L+ ++
Sbjct: 261 MFLWQYLPAPPICIRPSVQQEAASNEDDITSKLSEIILYA-GHLRESLL----------- 308
Query: 461 SEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKL-NINKTTGAHQIDGLKQMLDGKTGM 519
+G LN ++ W +Q V + +++ + + + I G Q L GK G
Sbjct: 309 -------KGAALNTIMEQ-WEFIQLQVGMYVNSDVPGLYQPGFGKPIRGFCQRLKGKQGR 360
Query: 520 IRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVING 579
R N+ GKRV+F+GR+VI+PDP L ID + VP AK LTYP V N+ LRK V+NG
Sbjct: 361 FRGNLSGKRVDFSGRTVISPDPNLGIDQVAVPERVAKNLTYPERVNRNNIEKLRKCVMNG 420
Query: 580 PNVYPGANMIQNEDGSV 596
P V+PGA + DG +
Sbjct: 421 PKVWPGAQGVIKRDGGM 437
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 41/66 (62%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP AK LTYP V N+ LRK V+NGP V+PGA +
Sbjct: 372 FSGRTVISPDPNLGIDQVAVPERVAKNLTYPERVNRNNIEKLRKCVMNGPKVWPGAQGVI 431
Query: 74 NEDGSV 79
DG +
Sbjct: 432 KRDGGM 437
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 63/134 (47%), Gaps = 3/134 (2%)
Query: 104 QHRAIMKEKIITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFN--SLGHTIPGGLYD 161
+ RA +KE++ + L+ + Q++ V++V + ++ + T P G D
Sbjct: 4 ERRAPIKEQLADQLPKRFRALQFGVQSHQDIVNQGVLEVSDNLLYDVENGRRTFPHGPLD 63
Query: 162 LAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKIN 221
+G S+ G C TC C GH GH+ LP+PV + + + +Q L+ C C K+
Sbjct: 64 PRLGTSSKTG-TCETCNLPLQSCAGHFGHVRLPLPVFHIGYLKYIQATLQNICKTCSKVL 122
Query: 222 IPATSQLLFINQIK 235
+ + F+ ++
Sbjct: 123 LEEEPKAKFLKALR 136
>gi|226876172|gb|ACO89407.1| RNA polymerase II largest subunit, partial [Cladophialophora
minourae]
Length = 983
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY++ MD A L+ + I ++ L GK +RQN+MGKRV+F+ R+VIT
Sbjct: 210 LQYHIATYMDNEIAGLDKAQHKSGRPIKSIRARLKGKENRLRQNLMGKRVDFSARTVITG 269
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L++D +GVP A+TLTYP VTP+ + LR++V NGPN +PGA + + G +
Sbjct: 270 DPNLSLDEVGVPRSIARTLTYPERVTPFTIDRLRRLVRNGPNDHPGARYVIRDTGERI 327
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 45/67 (67%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+ + LR++V NGPN +PGA +
Sbjct: 261 FSARTVITGDPNLSLDEVGVPRSIARTLTYPERVTPFTIDRLRRLVRNGPNDHPGARYVI 320
Query: 74 NEDGSVV 80
+ G +
Sbjct: 321 RDTGERI 327
>gi|149794935|gb|ABR31763.1| RNA polymerase II largest subunit [Capronia munkii]
Length = 991
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 73/118 (61%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY++ MD A L + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 218 LQYHIATYMDNDIAGLERAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 277
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L++D +GVP A+TLTYP VTP+N+ L+++V NGP PGA + + G +
Sbjct: 278 DPNLSLDEVGVPRSIARTLTYPETVTPFNLDRLKRLVANGPTELPGARYVIRDTGERI 335
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 44/67 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N+ L+++V NGP PGA +
Sbjct: 269 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPFNLDRLKRLVANGPTELPGARYVI 328
Query: 74 NEDGSVV 80
+ G +
Sbjct: 329 RDTGERI 335
>gi|402880352|ref|XP_003903768.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Papio
anubis]
Length = 1390
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 80/141 (56%), Gaps = 4/141 (2%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
+ W LQ L ++++L+ A + G Q L GK G R N+ GKRV+F+G
Sbjct: 306 IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
R+VI+PDP L ID + VP+ AK LT+P V N++ LRK+V NGP V+PGAN IQ
Sbjct: 366 RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANISFLRKLVQNGPEVHPGANFIQQRH 425
Query: 594 GSVVRISSSQAVQRESLAKRL 614
+ R + RE +A+ L
Sbjct: 426 TQMKRF--LKYGNREKMAQEL 444
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP+ AK LT+P V N++ LRK+V NGP V+PGAN IQ
Sbjct: 363 FSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANISFLRKLVQNGPEVHPGANFIQ 422
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ R + RE +A+ L
Sbjct: 423 QRHTQMKRF--LKYGNREKMAQEL 444
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 3/106 (2%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+E++Q + ++V S ++ P G+ D MG SE+ PC TCG N C GH G
Sbjct: 26 EEMRQQAHIQVVSKNLYSQDNQHAPLLYGVLDHRMG-TSEKDRPCETCGKNLADCLGHYG 84
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
+I+L +P + +FR V +L++ C C I + + F++ +K
Sbjct: 85 YIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKKQFLDYLK 130
>gi|116753354|ref|YP_842472.1| DNA-directed RNA polymerase subunit A' [Methanosaeta thermophila
PT]
gi|116664805|gb|ABK13832.1| DNA-directed RNA polymerase, subunit A' [Methanosaeta thermophila
PT]
Length = 876
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 79/129 (61%), Gaps = 3/129 (2%)
Query: 476 LQNSWHELQYNVDLLMDAKLNI---NKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFA 532
+++ W LQY+V +D ++ + + L Q L GK G R ++ GKRVNF+
Sbjct: 258 IEDLWELLQYHVTTFLDNTVSGVPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNFS 317
Query: 533 GRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
R+VI+P P L+I+ +GVP+E AK LT P+ VTP N+ ++RK V+ GP+ +PG N +
Sbjct: 318 ARTVISPYPNLSINEVGVPIEVAKELTVPIMVTPKNIEVVRKYVMRGPDNHPGVNYVTRA 377
Query: 593 DGSVVRISS 601
DG V+++
Sbjct: 378 DGRRVKVTE 386
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 72/133 (54%), Gaps = 4/133 (3%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
++ + QE +++SVVKV + T++ G I GL D +G I + G C TCG +
Sbjct: 10 IRFGLISPQEFRKMSVVKVITADTYDDDGFPIEMGLMDPRLGVI-DPGLRCRTCGGRPGE 68
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLL-DAGYV 242
C GH GHI+L PVI+ F + ++ +L+ C C K+ + + F+ QI+ L D G
Sbjct: 69 CPGHFGHIDLVAPVIHVGFAKLIRKILRAICRECSKLMLSELEKKEFLRQIRTLEDLGQP 128
Query: 243 TQAKDLEETLFNE 255
T+ D+ +F E
Sbjct: 129 TE--DVVNKVFAE 139
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 49/71 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+P P L+I+ +GVP+E AK LT P+ VTP N+ ++RK V+ GP+ +PG N +
Sbjct: 316 FSARTVISPYPNLSINEVGVPIEVAKELTVPIMVTPKNIEVVRKYVMRGPDNHPGVNYVT 375
Query: 74 NEDGSVVRISS 84
DG V+++
Sbjct: 376 RADGRRVKVTE 386
>gi|406865480|gb|EKD18522.1| DNA-directed RNA polymerase 2 largest subunit [Marssonina brunnea
f. sp. 'multigermtubi' MB_m1]
Length = 1738
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 75/125 (60%), Gaps = 13/125 (10%)
Query: 483 LQYNVDLLMDAKLNINKTTGAHQ--------IDGLKQMLDGKTGMIRQNMMGKRVNFAGR 534
LQY+V MD N G Q + ++ L GK G +R N+MGKRV+F+ R
Sbjct: 309 LQYHVATYMD-----NDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSAR 363
Query: 535 SVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDG 594
+VIT DP L++D +GVP A+TLTYP VTP+N+ L ++V NGPN +PGA + DG
Sbjct: 364 TVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEHPGAKYVVRSDG 423
Query: 595 SVVRI 599
S + +
Sbjct: 424 SRIDL 428
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 47/69 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N+ L ++V NGPN +PGA +
Sbjct: 360 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEHPGAKYVV 419
Query: 74 NEDGSVVRI 82
DGS + +
Sbjct: 420 RSDGSRIDL 428
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 4/91 (4%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+E+K +SV + P T + T P GL D +G I +R C TC N ++C GH G
Sbjct: 27 EEIKNMSVCHILYPETMDET-RTKPRDQGLNDPRLGSI-DRQFKCATCDQNMSECPGHFG 84
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKI 220
HIEL PV + F + + LL++ C C ++
Sbjct: 85 HIELAKPVYHPGFLKKTKKLLEMVCHNCGRV 115
>gi|226876152|gb|ACO89397.1| RNA polymerase II largest subunit, partial [Capronia parasitica]
Length = 983
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 79/131 (60%), Gaps = 3/131 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY++ MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 210 LQYHIATYMDNEIAGLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 269
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
DP L++D +GVP A+TLTYP VT +N+ L+++V NGP+ +PGA + + G + +
Sbjct: 270 DPNLSLDEVGVPRSIARTLTYPETVTAFNIEKLKRLVANGPSEHPGARYVIRDTGERIDL 329
Query: 600 SSSQAVQRESL 610
+ SL
Sbjct: 330 RHHKRAGEMSL 340
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 49/80 (61%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N+ L+++V NGP+ +PGA +
Sbjct: 261 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTAFNIEKLKRLVANGPSEHPGARYVI 320
Query: 74 NEDGSVVRISSSQAVQRESL 93
+ G + + + SL
Sbjct: 321 RDTGERIDLRHHKRAGEMSL 340
>gi|195048078|ref|XP_001992466.1| GH24768 [Drosophila grimshawi]
gi|193893307|gb|EDV92173.1| GH24768 [Drosophila grimshawi]
Length = 1303
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 86/146 (58%), Gaps = 14/146 (9%)
Query: 476 LQNSWHELQYNVDLLMDAK-----LNI--NKTTGAHQIDGLKQMLDGKTGMIRQNMMGKR 528
+ W LQ +V L ++ LN+ KTT G+ Q L GK G R N+ GKR
Sbjct: 305 IHEDWDFLQLHVALYFHSEISGIPLNMAPKKTT-----RGIVQRLKGKQGRFRGNLSGKR 359
Query: 529 VNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANM 588
V+F+GR+VI+PDP L I+ +GVP+ AK LTYP V P N+ +++++V NGP+V+PGAN
Sbjct: 360 VDFSGRTVISPDPNLMINQVGVPVRVAKILTYPERVNPANIRIMKQLVRNGPSVHPGANY 419
Query: 589 IQNEDGSVVRISSSQAVQRESLAKRL 614
+Q S + + RE +A+ L
Sbjct: 420 VQQRGSSFKKYLAYG--NREKVAQEL 443
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 54/84 (64%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L I+ +GVP+ AK LTYP V P N+ +++++V NGP+V+PGAN +Q
Sbjct: 362 FSGRTVISPDPNLMINQVGVPVRVAKILTYPERVNPANIRIMKQLVRNGPSVHPGANYVQ 421
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
S + + RE +A+ L
Sbjct: 422 QRGSSFKKYLAYG--NREKVAQEL 443
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 133 EVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIE 192
E++Q S+V++ S + + +P G+ D MG IS + C TCG +C GH G+++
Sbjct: 27 EIQQESLVRIISKNLYQAQRQPVPYGVLDRRMG-ISTKDALCETCGQGLNECIGHFGYLD 85
Query: 193 LPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLF 230
L +PV + FR +L++ C C + + +++F
Sbjct: 86 LALPVFHIGHFRSTISILQMICKTCAHVMLKPEDRIVF 123
>gi|297301053|ref|XP_002805710.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
[Macaca mulatta]
Length = 1405
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 80/141 (56%), Gaps = 4/141 (2%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
+ W LQ L ++++L+ A + G Q L GK G R N+ GKRV+F+G
Sbjct: 306 IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
R+VI+PDP L ID + VP+ AK LT+P V N++ LRK+V NGP V+PGAN IQ
Sbjct: 366 RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANISFLRKLVQNGPEVHPGANFIQQRH 425
Query: 594 GSVVRISSSQAVQRESLAKRL 614
+ R + RE +A+ L
Sbjct: 426 TQMKRF--LKYGNREKMAQEL 444
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP+ AK LT+P V N++ LRK+V NGP V+PGAN IQ
Sbjct: 363 FSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANISFLRKLVQNGPEVHPGANFIQ 422
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ R + RE +A+ L
Sbjct: 423 QRHTQMKRF--LKYGNREKMAQEL 444
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 3/106 (2%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+E++Q + ++V S ++ P G+ D MG SE+ PC TCG N C GH G
Sbjct: 26 EEMRQQAHIQVVSKNLYSQDNQHAPLLYGVLDHRMG-TSEKDRPCETCGKNLADCLGHYG 84
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
+I+L +P + +FR V +L++ C C I + + F++ +K
Sbjct: 85 YIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKKQFLDYLK 130
>gi|20090127|ref|NP_616202.1| DNA-directed RNA polymerase subunit A' [Methanosarcina acetivorans
C2A]
gi|19915107|gb|AAM04682.1| DNA-directed RNA polymerase, subunit A [Methanosarcina acetivorans
C2A]
Length = 880
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 86/142 (60%), Gaps = 6/142 (4%)
Query: 476 LQNSWHELQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFA 532
+++ W LQY+V D + + + + L Q L GK G R ++ GKRVNF+
Sbjct: 262 IEDLWELLQYHVTTFFDNSVSGIPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNFS 321
Query: 533 GRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
R+VI+PDP L+I+ +GVP+ A+TLT P VTP N+ L+ V NG +++PGAN +
Sbjct: 322 ARTVISPDPNLSINEVGVPMPIARTLTIPAVVTPRNIEQLKVYVRNGEDIHPGANYVFRS 381
Query: 593 DGSVVRISSSQAVQRESLAKRL 614
DG +++++ + ++ LA++L
Sbjct: 382 DGRRIKVTN---MNKDDLAEKL 400
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 57/84 (67%), Gaps = 3/84 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L+I+ +GVP+ A+TLT P VTP N+ L+ V NG +++PGAN +
Sbjct: 320 FSARTVISPDPNLSINEVGVPMPIARTLTIPAVVTPRNIEQLKVYVRNGEDIHPGANYVF 379
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
DG +++++ + ++ LA++L
Sbjct: 380 RSDGRRIKVTN---MNKDDLAEKL 400
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 60/111 (54%), Gaps = 1/111 (0%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
+K + +E++++S + + T++ G I GL D +G I + G C TC +
Sbjct: 14 IKFGLMSPKEIRKMSATPIITADTYDDDGFPIDMGLMDTKLGVI-DPGLRCKTCSGRAGE 72
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQI 234
C GH GHIEL PV++ F + ++ LL+ +C C ++ + + F++Q+
Sbjct: 73 CPGHFGHIELVAPVVHVGFNKVIRKLLRATCRKCSRLLLEPAQKQQFLDQL 123
>gi|355562468|gb|EHH19062.1| hypothetical protein EGK_19701 [Macaca mulatta]
gi|355782811|gb|EHH64732.1| hypothetical protein EGM_18035 [Macaca fascicularis]
gi|380809180|gb|AFE76465.1| DNA-directed RNA polymerase III subunit RPC1 [Macaca mulatta]
gi|383415455|gb|AFH30941.1| DNA-directed RNA polymerase III subunit RPC1 [Macaca mulatta]
gi|383415457|gb|AFH30942.1| DNA-directed RNA polymerase III subunit RPC1 [Macaca mulatta]
gi|383415459|gb|AFH30943.1| DNA-directed RNA polymerase III subunit RPC1 [Macaca mulatta]
gi|383415461|gb|AFH30944.1| DNA-directed RNA polymerase III subunit RPC1 [Macaca mulatta]
gi|383415463|gb|AFH30945.1| DNA-directed RNA polymerase III subunit RPC1 [Macaca mulatta]
Length = 1390
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 80/141 (56%), Gaps = 4/141 (2%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
+ W LQ L ++++L+ A + G Q L GK G R N+ GKRV+F+G
Sbjct: 306 IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
R+VI+PDP L ID + VP+ AK LT+P V N++ LRK+V NGP V+PGAN IQ
Sbjct: 366 RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANISFLRKLVQNGPEVHPGANFIQQRH 425
Query: 594 GSVVRISSSQAVQRESLAKRL 614
+ R + RE +A+ L
Sbjct: 426 TQMKRF--LKYGNREKMAQEL 444
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP+ AK LT+P V N++ LRK+V NGP V+PGAN IQ
Sbjct: 363 FSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANISFLRKLVQNGPEVHPGANFIQ 422
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ R + RE +A+ L
Sbjct: 423 QRHTQMKRF--LKYGNREKMAQEL 444
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 3/106 (2%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+E++Q + ++V S ++ P G+ D MG SE+ PC TCG N C GH G
Sbjct: 26 EEMRQQAHIQVVSKNLYSQDNQHAPLLYGVLDHRMG-TSEKDRPCETCGKNLADCLGHYG 84
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
+I+L +P + +FR V +L++ C C I + + F++ +K
Sbjct: 85 YIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKKQFLDYLK 130
>gi|226876251|gb|ACO89446.1| RNA polymerase II largest subunit, partial [Ascosphaera colubrina]
Length = 963
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 79/125 (63%), Gaps = 7/125 (5%)
Query: 470 DTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQ-----IDGLKQMLDGKTGMIRQNM 524
D + + LQ LQY+V MD +I A Q + ++ L GK G +RQN+
Sbjct: 199 DGVGHGLQEFEALLQYHVATYMDN--DIAGQPKAMQKSNRPVKAIRGRLKGKEGRLRQNL 256
Query: 525 MGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYP 584
MGKRV+F+ R+VIT DP L++D +GVP+ A+TLTY VTP+N++ L +MV NGPN++P
Sbjct: 257 MGKRVDFSARTVITGDPNLSLDEVGVPVSIARTLTYTEVVTPYNISKLVQMVNNGPNIHP 316
Query: 585 GANMI 589
GA I
Sbjct: 317 GAKYI 321
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 44/59 (74%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 72
F R+VIT DP L++D +GVP+ A+TLTY VTP+N++ L +MV NGPN++PGA I
Sbjct: 263 FSARTVITGDPNLSLDEVGVPVSIARTLTYTEVVTPYNISKLVQMVNNGPNIHPGAKYI 321
>gi|403159566|ref|XP_003320172.2| DNA-directed RNA polymerase III subunit C1 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
gi|375168152|gb|EFP75753.2| DNA-directed RNA polymerase III subunit C1 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
Length = 1419
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 79/136 (58%), Gaps = 3/136 (2%)
Query: 476 LQNSWHELQYNVDLLMDAKL-NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGR 534
+ W +Q +V + ++A+L + G I G Q L GKTG R N+ GKRV+F+GR
Sbjct: 315 IMEQWEFMQLSVAMYINAELPGVPSQMGVKPIKGFCQRLKGKTGRFRGNLSGKRVDFSGR 374
Query: 535 SVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDG 594
+VI+PDP L+I + VP AK LTYP VT N+ LR+ + NGP+++PGAN + G
Sbjct: 375 TVISPDPNLSITEVAVPDRVAKILTYPERVTAHNIDRLRQCIRNGPDIHPGANYLVA--G 432
Query: 595 SVVRISSSQAVQRESL 610
S S S + SL
Sbjct: 433 STTNASGSALPFKRSL 448
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L+I + VP AK LTYP VT N+ LR+ + NGP+++PGAN +
Sbjct: 371 FSGRTVISPDPNLSITEVAVPDRVAKILTYPERVTAHNIDRLRQCIRNGPDIHPGANYLV 430
Query: 74 NEDGSVVRISSSQAVQRESL 93
GS S S + SL
Sbjct: 431 A--GSTTNASGSALPFKRSL 448
Score = 45.4 bits (106), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 157 GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFL 216
GG+ D +G S++ C TC C GH +I+L +PV + +FR V +L+ C
Sbjct: 66 GGVLDSRLG-TSDKSGICGTCNAKMADCVGHYSYIKLILPVFHIGYFRAVIQMLQDICKT 124
Query: 217 CHKINIPATSQLLFINQIK 235
C ++ + + L++ + +
Sbjct: 125 CARVLLSEEDRRLYLIKFR 143
>gi|388580014|gb|EIM20332.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Wallemia sebi CBS 633.66]
Length = 1409
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 73/124 (58%), Gaps = 1/124 (0%)
Query: 469 GDTLNNKLQNSWHELQYNVDLLMDAKL-NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGK 527
G + ++L W LQ + ++A++ + I G Q L GK G R N+ GK
Sbjct: 294 GKSTTSQLMEQWELLQLACAMYINAEMPGVPSDKATKPIRGFVQRLKGKQGRFRGNLSGK 353
Query: 528 RVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGAN 587
RV+F+GR+VI PDP L+++ + VP AK LTYP V N+ LR+ V NGP+V+PGAN
Sbjct: 354 RVDFSGRTVIGPDPNLSVNEVAVPQRIAKVLTYPERVFEHNIESLRQAVRNGPDVHPGAN 413
Query: 588 MIQN 591
+QN
Sbjct: 414 YVQN 417
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 41/61 (67%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI PDP L+++ + VP AK LTYP V N+ LR+ V NGP+V+PGAN +Q
Sbjct: 357 FSGRTVIGPDPNLSVNEVAVPQRIAKVLTYPERVFEHNIESLRQAVRNGPDVHPGANYVQ 416
Query: 74 N 74
N
Sbjct: 417 N 417
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
Query: 112 KIITRQEVVPEILKLKYYT--DQEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGPI 167
K I Q+ I +++ T QE+ ++S +V +N P G+ D G
Sbjct: 2 KDIVTQDAPKRIKHVQFSTLSPQELVKISETEVTHNGLYNPTPDRAPQRNGVLDRRFG-T 60
Query: 168 SERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKI 220
S++ C TCG + +C GH G+I+L +PV + +FRD+ +L+ C C ++
Sbjct: 61 SDKSGSCDTCGESMAECVGHYGYIKLALPVFHIGYFRDIIAILQDICKNCARV 113
>gi|312076520|ref|XP_003140898.1| DNA-directed RNA polymerase II largest subunit [Loa loa]
Length = 1875
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 75/118 (63%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V L+D L G + +KQ L GK G IR N+MGKRV+F+ R+VITP
Sbjct: 302 LQYHVATLIDNSIPGLPAATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITP 361
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L ID++GVP A+ +T+P VTP+N+ L+++V G + YPGA I E+G+ V
Sbjct: 362 DPNLPIDTVGVPRTIAQNMTFPEIVTPFNIDKLQELVNRGDSQYPGAKYIIRENGARV 419
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 46/67 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID++GVP A+ +T+P VTP+N+ L+++V G + YPGA I
Sbjct: 353 FSARTVITPDPNLPIDTVGVPRTIAQNMTFPEIVTPFNIDKLQELVNRGDSQYPGAKYII 412
Query: 74 NEDGSVV 80
E+G+ V
Sbjct: 413 RENGARV 419
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 133 EVKQLSVVKV-FSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHI 191
E+K++S+ ++ FS I N G GGL D G + RG C TC + C GH HI
Sbjct: 27 EIKRMSIGEIEFSEIYEN--GKPKLGGLMDPRQGVVDRRGR-CMTCAGSLADCPGHFAHI 83
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKINI 222
EL PV + F LL+ CF C ++ +
Sbjct: 84 ELAKPVFHIGFLSKTLKLLRCVCFYCSRLMV 114
>gi|133402|sp|P09846.2|RPOA1_METTW RecName: Full=DNA-directed RNA polymerase subunit A'
gi|809727|emb|CAA30838.1| unnamed protein product [Methanothermobacter thermautotrophicus]
Length = 865
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 120/241 (49%), Gaps = 40/241 (16%)
Query: 367 SEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRP-LSMEQMPP 425
SEV +++ N+ L L E+ + M + L VPP +RP +++E
Sbjct: 174 SEVRERLERITDNDSLLLG-------VNPEVARPEWMVLTVLPVPPVTVRPSITLETG-- 224
Query: 426 VEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQY 485
E S + L ++ I+ + + + ++ + A + I +++ W LQY
Sbjct: 225 -ERSEDDLTHKLVD--------ILRINQRLKENMEAGAPQLI--------VEDLWELLQY 267
Query: 486 NVDLLMDAKLNINKTTG--------AHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVI 537
+V D N+ +G + L Q L GK G R N+ GKRVNF+ R+V+
Sbjct: 268 HVTTYFD-----NEASGVPPARHRSGRPLKTLAQRLKGKEGRFRSNLSGKRVNFSARTVV 322
Query: 538 TPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
+PDP ++++ +GVP AK +T PV VT WN+ +++ + NGP+V+PGAN + DG +
Sbjct: 323 SPDPNVSVNEVGVPELIAKEVTVPVYVTEWNIDRMKEHIENGPDVHPGANYVIRPDGRKI 382
Query: 598 R 598
R
Sbjct: 383 R 383
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 47/68 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+V++PDP ++++ +GVP AK +T PV VT WN+ +++ + NGP+V+PGAN +
Sbjct: 316 FSARTVVSPDPNVSVNEVGVPELIAKEVTVPVYVTEWNIDRMKEHIENGPDVHPGANYVI 375
Query: 74 NEDGSVVR 81
DG +R
Sbjct: 376 RPDGRKIR 383
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHI 191
++++++SV ++ +P T++ G+ I L D +G I C +CG +C GH G I
Sbjct: 19 EDIRKMSVAQIVTPDTYDEDGYPIENELMDPRLGVIGS-SLRCRSCGAKGGECPGHFGSI 77
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATS 226
L PVI+ F + +L C C +I + T
Sbjct: 78 NLARPVIHVGFADTIHKILSSICRKCSRILLTETE 112
>gi|148642969|ref|YP_001273482.1| DNA-directed RNA polymerase subunit A' [Methanobrevibacter smithii
ATCC 35061]
gi|148551986|gb|ABQ87114.1| DNA-dependent RNA polymerase, subunit A', RpoA [Methanobrevibacter
smithii ATCC 35061]
Length = 894
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 75/132 (56%), Gaps = 13/132 (9%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTG--------AHQIDGLKQMLDGKTGMIRQNMMGK 527
+++ W LQY+V D N+ +G + L Q L GK G R N+ GK
Sbjct: 262 VEDLWELLQYHVTTYFD-----NEASGVPPARHRSGRPLKTLAQRLKGKEGRFRSNLSGK 316
Query: 528 RVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGAN 587
RVNF+ R+VI+PDP ++I+ +GVP AK +T P V WN+ +R + NGPNV+PGAN
Sbjct: 317 RVNFSARTVISPDPNISINEVGVPEMIAKEVTVPAYVNDWNMDEMRTYIENGPNVHPGAN 376
Query: 588 MIQNEDGSVVRI 599
+ DG +R+
Sbjct: 377 YVIRTDGRKIRV 388
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 45/69 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP ++I+ +GVP AK +T P V WN+ +R + NGPNV+PGAN +
Sbjct: 320 FSARTVISPDPNISINEVGVPEMIAKEVTVPAYVNDWNMDEMRTYIENGPNVHPGANYVI 379
Query: 74 NEDGSVVRI 82
DG +R+
Sbjct: 380 RTDGRKIRV 388
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 68/127 (53%), Gaps = 8/127 (6%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDP---CTTCGNNYTKCKGHI 188
++++++SVVK+ +P T++ G+ I GL D +G I DP C +CG +C+GH
Sbjct: 19 EDIREMSVVKIETPDTYDEDGYPIENGLMDPHLGVI----DPSLKCRSCGYRGGECQGHF 74
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
G IEL PVI+ F + +L+ +C C ++ + + +IK + K L
Sbjct: 75 GSIELARPVIHVGFGDIIHKILRSTCNECGRVLLTDDEIFKYTEKIKDAQNHHENLTKIL 134
Query: 249 EETLFNE 255
+E ++NE
Sbjct: 135 KE-IYNE 140
>gi|83320446|gb|ABC02850.1| RNA polymerase II largest subunit, partial [Mortierella
verticillata]
Length = 1016
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 77/120 (64%), Gaps = 7/120 (5%)
Query: 481 HE--LQYNVDLLMDAKLNINKTTGAHQ----IDGLKQMLDGKTGMIRQNMMGKRVNFAGR 534
HE LQY+V MD + + AH+ + ++ L GK G +R N+MGKRV+F+ R
Sbjct: 221 HEQLLQYHVATYMDNDI-AGQPPAAHKNGRPLKSIRARLKGKEGRLRGNLMGKRVDFSAR 279
Query: 535 SVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDG 594
+VIT DP L+ID +GVP A+TLTYP VTP+N+ L+K+V NGP +PGA + +DG
Sbjct: 280 TVITGDPNLSIDEVGVPRSIARTLTYPELVTPYNIDKLQKLVRNGPTEHPGAVYVIRDDG 339
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 45/64 (70%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L+ID +GVP A+TLTYP VTP+N+ L+K+V NGP +PGA +
Sbjct: 276 FSARTVITGDPNLSIDEVGVPRSIARTLTYPELVTPYNIDKLQKLVRNGPTEHPGAVYVI 335
Query: 74 NEDG 77
+DG
Sbjct: 336 RDDG 339
>gi|393905343|gb|EFO23174.2| DNA-directed RNA polymerase II largest subunit [Loa loa]
Length = 1870
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 75/118 (63%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V L+D L G + +KQ L GK G IR N+MGKRV+F+ R+VITP
Sbjct: 302 LQYHVATLIDNSIPGLPAATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITP 361
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L ID++GVP A+ +T+P VTP+N+ L+++V G + YPGA I E+G+ V
Sbjct: 362 DPNLPIDTVGVPRTIAQNMTFPEIVTPFNIDKLQELVNRGDSQYPGAKYIIRENGARV 419
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 46/67 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID++GVP A+ +T+P VTP+N+ L+++V G + YPGA I
Sbjct: 353 FSARTVITPDPNLPIDTVGVPRTIAQNMTFPEIVTPFNIDKLQELVNRGDSQYPGAKYII 412
Query: 74 NEDGSVV 80
E+G+ V
Sbjct: 413 RENGARV 419
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 133 EVKQLSVVKV-FSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHI 191
E+K++S+ ++ FS I N G GGL D G + RG C TC + C GH HI
Sbjct: 27 EIKRMSIGEIEFSEIYEN--GKPKLGGLMDPRQGVVDRRGR-CMTCAGSLADCPGHFAHI 83
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKINI 222
EL PV + F LL+ CF C ++ +
Sbjct: 84 ELAKPVFHIGFLSKTLKLLRCVCFYCSRLMV 114
>gi|222445206|ref|ZP_03607721.1| hypothetical protein METSMIALI_00829 [Methanobrevibacter smithii
DSM 2375]
gi|261350232|ref|ZP_05975649.1| DNA-directed RNA polymerase subunit A [Methanobrevibacter smithii
DSM 2374]
gi|222434771|gb|EEE41936.1| DNA-directed RNA polymerase subunit A' [Methanobrevibacter smithii
DSM 2375]
gi|288861018|gb|EFC93316.1| DNA-directed RNA polymerase subunit A [Methanobrevibacter smithii
DSM 2374]
Length = 894
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 75/132 (56%), Gaps = 13/132 (9%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTG--------AHQIDGLKQMLDGKTGMIRQNMMGK 527
+++ W LQY+V D N+ +G + L Q L GK G R N+ GK
Sbjct: 262 VEDLWELLQYHVTTYFD-----NEASGVPPARHRSGRPLKTLAQRLKGKEGRFRSNLSGK 316
Query: 528 RVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGAN 587
RVNF+ R+VI+PDP ++I+ +GVP AK +T P V WN+ +R + NGPNV+PGAN
Sbjct: 317 RVNFSARTVISPDPNISINEVGVPEMIAKEVTVPAYVNDWNMDEMRTYIENGPNVHPGAN 376
Query: 588 MIQNEDGSVVRI 599
+ DG +R+
Sbjct: 377 YVIRTDGRKIRV 388
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 45/69 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP ++I+ +GVP AK +T P V WN+ +R + NGPNV+PGAN +
Sbjct: 320 FSARTVISPDPNISINEVGVPEMIAKEVTVPAYVNDWNMDEMRTYIENGPNVHPGANYVI 379
Query: 74 NEDGSVVRI 82
DG +R+
Sbjct: 380 RTDGRKIRV 388
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 68/127 (53%), Gaps = 8/127 (6%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDP---CTTCGNNYTKCKGHI 188
++++++SVVK+ +P T++ G+ I GL D +G I DP C +CG +C+GH
Sbjct: 19 EDIREMSVVKIETPDTYDEDGYPIENGLMDPHLGVI----DPSLKCRSCGYRGGECQGHF 74
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
G IEL PVI+ F + +L+ +C C ++ + + +IK + K L
Sbjct: 75 GSIELARPVIHVGFGDIIHKILRSTCNECGRVLLTDDEIFKYTEKIKDAQNHHENLTKIL 134
Query: 249 EETLFNE 255
+E ++NE
Sbjct: 135 KE-IYNE 140
>gi|294610771|gb|ADF27177.1| RNA polymerase II largest subunit [Coniosporium apollinis]
Length = 351
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 73/118 (61%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A + + ++ L GK G +R N+MGKRV+F+ R+VIT
Sbjct: 212 LQYHVATFMDNDIAGIPQALQKSGRALKTIRGRLKGKEGRLRGNLMGKRVDFSARTVITG 271
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L++D +GVP A+TLTYP VTP+N+ L ++V NGPN +PGA + E+G +
Sbjct: 272 DPNLSLDEVGVPRSIARTLTYPETVTPYNIGKLHQLVRNGPNEHPGAKYVIRENGERI 329
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 46/67 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N+ L ++V NGPN +PGA +
Sbjct: 263 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIGKLHQLVRNGPNEHPGAKYVI 322
Query: 74 NEDGSVV 80
E+G +
Sbjct: 323 RENGERI 329
>gi|170587086|ref|XP_001898310.1| DNA-directed RNA polymerase II largest subunit [Brugia malayi]
gi|158594705|gb|EDP33289.1| DNA-directed RNA polymerase II largest subunit, putative [Brugia
malayi]
Length = 1943
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 75/118 (63%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V L+D L G + +KQ L GK G IR N+MGKRV+F+ R+VITP
Sbjct: 375 LQYHVATLIDNSIPGLPAATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITP 434
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L ID++GVP A+ +T+P VTP+N+ L+++V G + YPGA I E+G+ V
Sbjct: 435 DPNLPIDTVGVPRTIAQNMTFPEIVTPFNIDKLQELVNRGDSQYPGAKYIIRENGARV 492
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 46/67 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID++GVP A+ +T+P VTP+N+ L+++V G + YPGA I
Sbjct: 426 FSARTVITPDPNLPIDTVGVPRTIAQNMTFPEIVTPFNIDKLQELVNRGDSQYPGAKYII 485
Query: 74 NEDGSVV 80
E+G+ V
Sbjct: 486 RENGARV 492
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 133 EVKQLSVVKV-FSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHI 191
E+K++S+ ++ FS I N G GGL D G + RG C TC + C GH HI
Sbjct: 100 EIKRMSIGEIEFSEIYEN--GKPKLGGLMDPRQGVVDRRGR-CMTCAGSLADCPGHFAHI 156
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKINI 222
EL PV + F LL+ CF C ++ +
Sbjct: 157 ELAKPVFHIGFLSKTLKLLRCVCFYCSRLMV 187
>gi|156043073|ref|XP_001588093.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
gi|154694927|gb|EDN94665.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1459
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 81/138 (58%), Gaps = 4/138 (2%)
Query: 457 SDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKL-NINKTTGAHQIDGLKQMLDG 515
S L+ AL+ +G + ++ W LQ + + +++ + + + I G Q L G
Sbjct: 301 SSLIRAALQ--KGQAVQTIMEQ-WDFLQLQIAMYVNSDVPGLQQPGFGKAIRGFCQRLKG 357
Query: 516 KTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKM 575
K G R N+ GKRV+F+GR+VI+PDP L ID + VP+ AK LTYP V N+ LRK
Sbjct: 358 KQGRFRGNLSGKRVDFSGRTVISPDPNLGIDEVAVPILVAKNLTYPERVQRQNIEKLRKC 417
Query: 576 VINGPNVYPGANMIQNED 593
VINGPNV+PGA I +D
Sbjct: 418 VINGPNVHPGAQQIVKKD 435
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 42/63 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP+ AK LTYP V N+ LRK VINGPNV+PGA I
Sbjct: 373 FSGRTVISPDPNLGIDEVAVPILVAKNLTYPERVQRQNIEKLRKCVINGPNVHPGAQQIV 432
Query: 74 NED 76
+D
Sbjct: 433 KKD 435
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 3/114 (2%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFN-SLGHT-IPGGLYDLAMGPISERGDPCTTCGNNY 181
LK ++Q++ V++V + +N G T IP G D +G S+ G C TC
Sbjct: 25 LKFGILSNQDIVNQGVIEVSNKTLYNVDNGRTPIPHGPLDPRLGTSSKAGR-CETCDKGL 83
Query: 182 TKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
C GH GH+ LP+P + + + + ++L+ C C ++ + + F+ +++
Sbjct: 84 QDCNGHFGHVRLPLPAFHIGYLKLIIMILQNICKTCARVLLTDAERRQFLRELR 137
>gi|431904080|gb|ELK09502.1| DNA-directed RNA polymerase III subunit RPC1 [Pteropus alecto]
Length = 1375
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 80/141 (56%), Gaps = 4/141 (2%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
+ W LQ L ++++L+ A + G Q L GK G R N+ GKRV+F+G
Sbjct: 306 IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
R+VI+PDP L ID + VP+ AK LT+P V N++ LRK+V NGP V+PGAN IQ
Sbjct: 366 RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANISFLRKLVQNGPEVHPGANFIQQRH 425
Query: 594 GSVVRISSSQAVQRESLAKRL 614
+ R + RE +A+ L
Sbjct: 426 TQMKRF--LKYGNREKMAQEL 444
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP+ AK LT+P V N++ LRK+V NGP V+PGAN IQ
Sbjct: 363 FSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANISFLRKLVQNGPEVHPGANFIQ 422
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ R + RE +A+ L
Sbjct: 423 QRHTQMKRF--LKYGNREKMAQEL 444
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+E++Q + ++V S ++ + P G+ D MG SE+ PC TCG N C GH G
Sbjct: 26 EEMRQQAHIQVVSKNLYSQDNNHAPLLYGVLDHRMG-TSEKDRPCETCGKNLADCLGHYG 84
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
+I+L +P + +FR V +L++ C C I + + F++ +K
Sbjct: 85 YIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKKQFLDYLK 130
>gi|418204398|gb|AFX61753.1| RNA polymerase I largest subunit, partial [Ascosphaera cf. larvis
64254]
Length = 1616
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 78/125 (62%), Gaps = 7/125 (5%)
Query: 470 DTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQ-----IDGLKQMLDGKTGMIRQNM 524
D + + LQ LQY+V MD +I A Q + ++ L GK G +RQN+
Sbjct: 277 DGVGHGLQEFEALLQYHVATYMDN--DIAGQPKAMQKSNRPVKAIRGRLKGKEGRLRQNL 334
Query: 525 MGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYP 584
MGKRV+F+ R+VIT DP L++D +GVP+ A+TLTY VTP+N++ L MV NGPN++P
Sbjct: 335 MGKRVDFSARTVITGDPNLSLDEVGVPVSIARTLTYTEVVTPYNISKLVAMVNNGPNIHP 394
Query: 585 GANMI 589
GA I
Sbjct: 395 GAKYI 399
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 43/59 (72%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 72
F R+VIT DP L++D +GVP+ A+TLTY VTP+N++ L MV NGPN++PGA I
Sbjct: 341 FSARTVITGDPNLSLDEVGVPVSIARTLTYTEVVTPYNISKLVAMVNNGPNIHPGAKYI 399
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 133 EVKQLSVVKVFSPITFNSLGHT-IPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHI 191
E+K++SVVK+ P T + GL D +G I +R C TC C GH GHI
Sbjct: 10 EIKKMSVVKIVYPETMDDQRQRPREEGLNDPKLGTI-DRAFKCATCEQGIMDCPGHFGHI 68
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKINIPAT 225
EL PV + F ++ LL+ C C KI T
Sbjct: 69 ELASPVFHIGFLTKIKKLLETVCINCGKIKADMT 102
>gi|37726869|gb|AAO38801.1| DNA-dependent RNA polymerase II largest subunit [Gregarina
niphandrodes]
Length = 1020
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 72/116 (62%), Gaps = 3/116 (2%)
Query: 483 LQYNVDLLMDAK---LNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V M+ + L + T + +++ L GK G +R N+MGKRV+F+ R+VIT
Sbjct: 220 LQYHVATFMNNEIPGLPVATTKSKKPMKSIRERLKGKEGRLRGNLMGKRVDFSARTVITG 279
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGS 595
DP L ID +GVP A LTYP VT N+ +LRK V NGP+V+PGA I DG+
Sbjct: 280 DPNLQIDQVGVPRSIAMNLTYPELVTSMNLEMLRKAVSNGPSVWPGARYITRTDGT 335
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 42/65 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L ID +GVP A LTYP VT N+ +LRK V NGP+V+PGA I
Sbjct: 271 FSARTVITGDPNLQIDQVGVPRSIAMNLTYPELVTSMNLEMLRKAVSNGPSVWPGARYIT 330
Query: 74 NEDGS 78
DG+
Sbjct: 331 RTDGT 335
>gi|312273887|gb|ADQ57313.1| RNA polymerase II largest subunit, partial [Nosema disstriae]
Length = 974
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 109/218 (50%), Gaps = 34/218 (15%)
Query: 390 VLDTTKELIATDIMFIRS-------LVVPPNNLRP-LSMEQMPPVEHSRNKLYQSILYSC 441
+ D E++ D+ + R L+VPP ++RP + ME M E I+ S
Sbjct: 95 ISDEDIEVLGFDLAYSRPEWLILTVLLVPPPSVRPSIVMEGMLRAEDDLTHKLSDIIKSN 154
Query: 442 GSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTT 501
LK M +G G + + Q LQ++V L+D +I+
Sbjct: 155 TYLKKYEM---------------EGAPGHIIRDYEQ----LLQFHVATLIDN--DISGQP 193
Query: 502 GAHQIDG-----LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAK 556
A Q G + L GK G +R N+MGKRV+F+ RSVIT D ++++ +GVPLE AK
Sbjct: 194 QALQKSGRPLKSISARLKGKEGRVRGNLMGKRVDFSARSVITADANISLEEVGVPLEVAK 253
Query: 557 TLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDG 594
T+P +TP+N+ L K+V NGPN YPGAN + DG
Sbjct: 254 IHTFPEKITPFNIEKLEKLVSNGPNEYPGANYVIRTDG 291
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 44/64 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVIT D ++++ +GVPLE AK T+P +TP+N+ L K+V NGPN YPGAN +
Sbjct: 228 FSARSVITADANISLEEVGVPLEVAKIHTFPEKITPFNIEKLEKLVSNGPNEYPGANYVI 287
Query: 74 NEDG 77
DG
Sbjct: 288 RTDG 291
>gi|157741626|gb|ABV69518.1| RNA polymerase II largest subunit, partial [Verrucula inconnexaria]
Length = 999
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 72/118 (61%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V M A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 222 LQYHVATYMGNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 281
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L++D +GVP A+TLTYP VT +N++ L+ V NGP +PGA + E G +
Sbjct: 282 DPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKAFVTNGPEAHPGARYVIRETGERI 339
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 43/67 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N++ L+ V NGP +PGA +
Sbjct: 273 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKAFVTNGPEAHPGARYVI 332
Query: 74 NEDGSVV 80
E G +
Sbjct: 333 RETGERI 339
>gi|31544947|gb|AAH53071.1| Polr3a protein [Mus musculus]
Length = 649
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 80/141 (56%), Gaps = 4/141 (2%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
+ W LQ L ++++L+ A + G Q L GK G R N+ GKRV+F+G
Sbjct: 306 IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
R+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V NGP+V+PGAN IQ
Sbjct: 366 RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPDVHPGANFIQQRH 425
Query: 594 GSVVRISSSQAVQRESLAKRL 614
+ R + RE +A+ L
Sbjct: 426 MQMKRF--LKYGNREKMAQEL 444
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V NGP+V+PGAN IQ
Sbjct: 363 FSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPDVHPGANFIQ 422
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ R + RE +A+ L
Sbjct: 423 QRHMQMKRF--LKYGNREKMAQEL 444
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+E++Q + ++V S ++ + P G+ D MG SE+ PC TCG N C GH G
Sbjct: 26 EEMRQQAHIQVVSKNLYSQDNNHAPLLYGVLDHRMG-TSEKDRPCETCGKNLADCLGHYG 84
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
+I+L +P + +FR V +L++ C C I + + F++ +K
Sbjct: 85 YIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKQQFLDFLK 130
>gi|294610773|gb|ADF27178.1| RNA polymerase II largest subunit [Coniosporium apollinis]
Length = 356
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 75/120 (62%), Gaps = 7/120 (5%)
Query: 483 LQYNVDLLMDAKLNINKTTGAHQIDG-----LKQMLDGKTGMIRQNMMGKRVNFAGRSVI 537
LQY+V MD +I A Q G ++ L GK G +R N+MGKRV+F+ R+VI
Sbjct: 212 LQYHVATFMDN--DIAGIPQALQKSGRALKTIRGRLKGKEGRLRGNLMGKRVDFSARTVI 269
Query: 538 TPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
T DP L++D +GVP A+TLTYP VTP+N+ L ++V NGPN +PGA + E+G +
Sbjct: 270 TGDPNLSLDEVGVPRSIARTLTYPETVTPYNIGKLHQLVRNGPNEHPGAKYVIRENGERI 329
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 46/67 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N+ L ++V NGPN +PGA +
Sbjct: 263 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIGKLHQLVRNGPNEHPGAKYVI 322
Query: 74 NEDGSVV 80
E+G +
Sbjct: 323 RENGERI 329
>gi|440494610|gb|ELQ76975.1| RNA polymerase I, large subunit [Trachipleistophora hominis]
Length = 1364
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/108 (50%), Positives = 71/108 (65%), Gaps = 4/108 (3%)
Query: 508 GLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPW 567
G KQ L+ K G+ RQNMMGKRVN+ R+VI+PDPY+ D IG+P+ A LT+P VTP+
Sbjct: 411 GFKQALEKKEGLFRQNMMGKRVNYTARTVISPDPYIATDEIGIPMHIACRLTFPERVTPF 470
Query: 568 NVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLI 615
N L + VINGP V+PGA I E+G V+ S R ++AK L+
Sbjct: 471 NRRRLERCVINGP-VFPGAECIV-ENG--VKRSLKYVKNRRAVAKTLL 514
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 141 KVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINT 200
++F P T +SL I GGL D +GP C C NY C GH G I L +IN
Sbjct: 21 EIFIPQTLDSLNIPIQGGLQDTMLGPQPHE-TQCAKCHLNYFACPGHFGEIALQTMIINP 79
Query: 201 LFFRDVQLLLKLSCFLCHKINIPATSQ 227
L F+D+ ++++L C CH+ IP ++
Sbjct: 80 LLFKDLFMIVRLGCTKCHRFRIPTNAR 106
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 55/93 (59%), Gaps = 4/93 (4%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ R+VI+PDPY+ D IG+P+ A LT+P VTP+N L + VINGP V+PGA I
Sbjct: 434 YTARTVISPDPYIATDEIGIPMHIACRLTFPERVTPFNRRRLERCVINGP-VFPGAECIV 492
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHR 106
E+G V+ S R ++AK L+ HR
Sbjct: 493 -ENG--VKRSLKYVKNRRAVAKTLLKNSTVVHR 522
>gi|418204400|gb|AFX61754.1| RNA polymerase I largest subunit, partial [Ascosphaera larvis]
Length = 1627
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 78/125 (62%), Gaps = 7/125 (5%)
Query: 470 DTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQ-----IDGLKQMLDGKTGMIRQNM 524
D + + LQ LQY+V MD +I A Q + ++ L GK G +RQN+
Sbjct: 277 DGVGHGLQEFEALLQYHVATYMDN--DIAGQPKAMQKSNRPVKAIRGRLKGKEGRLRQNL 334
Query: 525 MGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYP 584
MGKRV+F+ R+VIT DP L++D +GVP+ A+TLTY VTP+N++ L MV NGPN++P
Sbjct: 335 MGKRVDFSARTVITGDPNLSLDEVGVPVSIARTLTYTEVVTPYNISKLVAMVNNGPNIHP 394
Query: 585 GANMI 589
GA I
Sbjct: 395 GAKYI 399
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 43/59 (72%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 72
F R+VIT DP L++D +GVP+ A+TLTY VTP+N++ L MV NGPN++PGA I
Sbjct: 341 FSARTVITGDPNLSLDEVGVPVSIARTLTYTEVVTPYNISKLVAMVNNGPNIHPGAKYI 399
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 133 EVKQLSVVKVFSPITFNSLGHT-IPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHI 191
E+K++SVVK+ P T + GL D +G I +R C TC C GH GHI
Sbjct: 10 EIKKMSVVKIVYPETMDDQRQRPREEGLNDPKLGTI-DRAFKCATCEQGIMDCPGHFGHI 68
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKINIPAT 225
EL PV + F ++ LL+ C C KI T
Sbjct: 69 ELASPVFHIGFLTKIKKLLETVCINCGKIKADMT 102
>gi|432329279|ref|YP_007247423.1| DNA-directed RNA polymerase subunit A' [Aciduliprofundum sp.
MAR08-339]
gi|432135988|gb|AGB05257.1| DNA-directed RNA polymerase subunit A' [Aciduliprofundum sp.
MAR08-339]
Length = 895
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 123/241 (51%), Gaps = 41/241 (17%)
Query: 388 IPVLDTTKELIATDIMFIRSLVVPPNNLRP-LSMEQMPPVEHSRNKLYQSILYSCGSLKS 446
+P+L E + M + L VPP N+RP +++E E S + L ++
Sbjct: 196 LPLLGMNPETARPEWMVLTVLPVPPVNVRPTITLETG---ERSEDDLTHKLVD------- 245
Query: 447 VIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTG---- 502
I+ + + + + S A + I +++ W LQY+V D N+T+G
Sbjct: 246 -IIRINQRLRENRDSGAPQLI--------IEDLWELLQYHVTTYFD-----NQTSGIPPA 291
Query: 503 ----AHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTL 558
+ L Q L GK G R N+ GKRVNF+ R+VI+P+P+L+I+ +GVP+ A+ L
Sbjct: 292 RHRSGRPLKTLVQRLKGKEGRFRSNLSGKRVNFSSRTVISPEPFLSINEVGVPVAAAREL 351
Query: 559 TYPVPVTPWNVTLLRKMVINGPN-----VYPGANMIQNEDGSVVRISSSQAVQRESLAKR 613
T P+ VT +N+ +R+++ GPN PGAN + DG ++I+ A E +AK+
Sbjct: 352 TVPITVTEYNIEKMREIIRRGPNPEGEKYVPGANYVIRPDGRRIKITERNA---EEVAKK 408
Query: 614 L 614
+
Sbjct: 409 I 409
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 58/99 (58%), Gaps = 1/99 (1%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
+K + +E++++S VKV + T++ G I GL DL MG I E G C TCG +
Sbjct: 15 IKFSLLSPEEIRRMSAVKVITADTYDDDGFPIDKGLMDLHMGVI-EPGLRCKTCGGKVDE 73
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINI 222
C GH GHIEL +PVI+ F ++++ L +C C +I +
Sbjct: 74 CPGHFGHIELAMPVIHVGFVKNIKNYLDATCRECGRIKL 112
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 56/89 (62%), Gaps = 8/89 (8%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPN-----VYPG 68
F R+VI+P+P+L+I+ +GVP+ A+ LT P+ VT +N+ +R+++ GPN PG
Sbjct: 324 FSSRTVISPEPFLSINEVGVPVAAARELTVPITVTEYNIEKMREIIRRGPNPEGEKYVPG 383
Query: 69 ANMIQNEDGSVVRISSSQAVQRESLAKRL 97
AN + DG ++I+ A E +AK++
Sbjct: 384 ANYVIRPDGRRIKITERNA---EEVAKKI 409
>gi|344251250|gb|EGW07354.1| DNA-directed RNA polymerase III subunit RPC1 [Cricetulus griseus]
Length = 1076
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 80/141 (56%), Gaps = 4/141 (2%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
+ W LQ L ++++L+ A + G Q L GK G R N+ GKRV+F+G
Sbjct: 285 IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 344
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
R+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V NGP+V+PGAN IQ
Sbjct: 345 RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPDVHPGANFIQQRH 404
Query: 594 GSVVRISSSQAVQRESLAKRL 614
+ R + RE +A+ L
Sbjct: 405 MQMKRF--LKYGNREKMAQEL 423
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V NGP+V+PGAN IQ
Sbjct: 342 FSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPDVHPGANFIQ 401
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ R + RE +A+ L
Sbjct: 402 QRHMQMKRF--LKYGNREKMAQEL 423
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+E++Q + ++V S ++ + P G+ D MG SE+ PC TCG N C GH G
Sbjct: 5 EEMRQQAHIQVVSKNLYSQDNNHAPLLYGVLDHRMG-TSEKDRPCETCGKNLADCLGHYG 63
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
+I+L +P + +FR V +L++ C C I + + F++ +K
Sbjct: 64 YIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKQQFLDFLK 109
>gi|294610769|gb|ADF27176.1| RNA polymerase II largest subunit [Coniosporium apollinis]
Length = 356
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 73/118 (61%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A + + ++ L GK G +R N+MGKRV+F+ R+VIT
Sbjct: 212 LQYHVATFMDNDIAGIPQALQKSGRALKTIRGRLKGKEGRLRGNLMGKRVDFSARTVITG 271
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L++D +GVP A+TLTYP VTP+N+ L ++V NGPN +PGA + E+G +
Sbjct: 272 DPNLSLDEVGVPRSIARTLTYPETVTPYNIGKLHQLVRNGPNEHPGAKYVIRENGERI 329
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 46/67 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N+ L ++V NGPN +PGA +
Sbjct: 263 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIGKLHQLVRNGPNEHPGAKYVI 322
Query: 74 NEDGSVV 80
E+G +
Sbjct: 323 RENGERI 329
>gi|397135858|gb|AFO11424.1| RNA polymerase I, partial [Pichia membranifaciens]
Length = 870
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 73/123 (59%), Gaps = 13/123 (10%)
Query: 483 LQYNVDLLMDAKLNINKTTGAHQ--------IDGLKQMLDGKTGMIRQNMMGKRVNFAGR 534
LQY+V MD N G Q I ++ L GK G +R N+MGKRV+F+ R
Sbjct: 109 LQYHVATYMD-----NDIAGQPQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSAR 163
Query: 535 SVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDG 594
+VI+ DP L +D +GVP AKTLTYP VTP+N+ L +MV NGPN +PGA + E+G
Sbjct: 164 TVISGDPNLELDQVGVPRSIAKTLTYPEIVTPYNIQALTEMVRNGPNEHPGAKYVIRENG 223
Query: 595 SVV 597
+
Sbjct: 224 DRI 226
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 45/67 (67%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+ DP L +D +GVP AKTLTYP VTP+N+ L +MV NGPN +PGA +
Sbjct: 160 FSARTVISGDPNLELDQVGVPRSIAKTLTYPEIVTPYNIQALTEMVRNGPNEHPGAKYVI 219
Query: 74 NEDGSVV 80
E+G +
Sbjct: 220 RENGDRI 226
>gi|157741632|gb|ABV69521.1| RNA polymerase II largest subunit, partial [Verruculopsis
poeltiana]
Length = 988
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 72/114 (63%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 211 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 270
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TLTYP VT +N+ L+ V NGP ++PGA I E+
Sbjct: 271 DPNLSLDEVGVPRSIARTLTYPETVTRFNMERLKNFVANGPQMHPGARYIIREN 324
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N+ L+ V NGP ++PGA I
Sbjct: 262 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNMERLKNFVANGPQMHPGARYII 321
Query: 74 NED 76
E+
Sbjct: 322 REN 324
>gi|120561203|gb|ABM26987.1| RNA polymerase II largest subunit, partial [Taphrina deformans]
Length = 1001
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 102/200 (51%), Gaps = 22/200 (11%)
Query: 401 DIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLL 460
D M I L VPP +RP VE K + + Y L +I A N ++ ++
Sbjct: 156 DWMIITVLPVPPPTVRP-------SVEQGGMKSHDDLTYK---LADIIKANANVKKGEVE 205
Query: 461 SEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTT---GAHQIDGLKQMLDGKT 517
I+ + ++ LQY+V MD + I ++ L GK
Sbjct: 206 GAPAHVIK------EFEDL---LQYHVATYMDNDIAGQPKALQKSGRAIKSIRARLKGKE 256
Query: 518 GMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVI 577
G +R N+MGKRV+F+ R+VIT DP L++D +GVP A+TLTYP VTP+N+ L+++V
Sbjct: 257 GRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPERVTPFNIHKLQQLVR 316
Query: 578 NGPNVYPGANMIQNEDGSVV 597
NGP+ +PGA I + G +
Sbjct: 317 NGPDEHPGAKYILRDTGERI 336
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 46/67 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N+ L+++V NGP+ +PGA I
Sbjct: 270 FSARTVITGDPNLSLDEVGVPRSIARTLTYPERVTPFNIHKLQQLVRNGPDEHPGAKYIL 329
Query: 74 NEDGSVV 80
+ G +
Sbjct: 330 RDTGERI 336
>gi|111278797|gb|ABH09096.1| RNA polymerase II largest subunit [Exophiala pisciphila]
Length = 378
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY++ MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 224 LQYHIATYMDNEIAGLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 283
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L++D +GVP A+TLT P VTP+N+ L+++V NGP +PGA + + G +
Sbjct: 284 DPNLSLDEVGVPRSIARTLTCPETVTPFNLDKLKRLVANGPTEHPGARYVIRDSGERI 341
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 44/67 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLT P VTP+N+ L+++V NGP +PGA +
Sbjct: 275 FSARTVITGDPNLSLDEVGVPRSIARTLTCPETVTPFNLDKLKRLVANGPTEHPGARYVI 334
Query: 74 NEDGSVV 80
+ G +
Sbjct: 335 RDSGERI 341
>gi|340519695|gb|EGR49933.1| predicted protein [Trichoderma reesei QM6a]
Length = 1465
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 108/230 (46%), Gaps = 28/230 (12%)
Query: 372 DFKKLWTNEHLFL----KCLIPVLDTTKELIATDIMFIRSLV-VPPNNLRPLSMEQMPPV 426
D LW H + C + LD T+ MFI V PP +RP ++
Sbjct: 230 DLNPLWVLNHFKMITATDCELLGLDPTE---GRPEMFIWQFVPAPPVCIRPSVAQEGAST 286
Query: 427 EHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYN 486
E I+Y G +++ + K K ++ + W LQ
Sbjct: 287 EDDLTAKLAEIVYISGLIRTALN--KGKPMQTIMEQ-----------------WEYLQLQ 327
Query: 487 VDLLMDAKL-NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNI 545
+ + +++ + +N+ I G Q L GK G R N+ GKRV+F+GR+VI+PDP L I
Sbjct: 328 IAMYVNSDVPGLNQPGFGKSIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLGI 387
Query: 546 DSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGS 595
+ + VP AK LT+P V N+ LR+ ++NGP V+PGAN + ++G+
Sbjct: 388 NQVAVPQLVAKNLTFPERVQSHNMEKLRQCILNGPKVWPGANHVIKDNGN 437
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 43/65 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L I+ + VP AK LT+P V N+ LR+ ++NGP V+PGAN +
Sbjct: 373 FSGRTVISPDPNLGINQVAVPQLVAKNLTFPERVQSHNMEKLRQCILNGPKVWPGANHVI 432
Query: 74 NEDGS 78
++G+
Sbjct: 433 KDNGN 437
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 3/114 (2%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGPISERGDPCTTCGNNY 181
+K ++Q++ V++V + ++ + P G D+ MG S+ G C TC
Sbjct: 25 IKFGIQSNQDIVNQGVLEVSQRMLYDIDNNRAPLTNGALDIRMGTSSKSGK-CGTCQEPL 83
Query: 182 TKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
C GH GH+ L +P + + R +Q +L+ C C K+ + + F+ ++
Sbjct: 84 KFCIGHFGHVRLALPAFHIGYLRFIQTILQNVCKTCAKVLLTEEERRSFLQDLR 137
>gi|294610775|gb|ADF27179.1| RNA polymerase II largest subunit [Coniosporium apollinis]
Length = 357
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 75/120 (62%), Gaps = 7/120 (5%)
Query: 483 LQYNVDLLMDAKLNINKTTGAHQIDG-----LKQMLDGKTGMIRQNMMGKRVNFAGRSVI 537
LQY+V MD +I A Q G ++ L GK G +R N+MGKRV+F+ R+VI
Sbjct: 212 LQYHVATFMDN--DIAGIPQALQKSGRPLKTIRGRLKGKEGRLRGNLMGKRVDFSARTVI 269
Query: 538 TPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
T DP L++D +GVP A+TLTYP VTP+N+ L ++V NGPN +PGA + E+G +
Sbjct: 270 TGDPNLSLDEVGVPRSIARTLTYPETVTPYNIGKLHQLVRNGPNEHPGAKYVIRENGERI 329
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 46/67 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N+ L ++V NGPN +PGA +
Sbjct: 263 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIGKLHQLVRNGPNEHPGAKYVI 322
Query: 74 NEDGSVV 80
E+G +
Sbjct: 323 RENGERI 329
>gi|206601357|gb|ACI16397.1| RNA polymerase II largest subunit [Polyblastia gotlandica]
Length = 392
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 72/114 (63%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 230 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 289
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TLTYP VTP N++ L+ +V GP +PGA I E+
Sbjct: 290 DPNLSLDEVGVPRSIARTLTYPETVTPSNISRLKWLVTRGPENHPGARYIIREN 343
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP N++ L+ +V GP +PGA I
Sbjct: 281 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPSNISRLKWLVTRGPENHPGARYII 340
Query: 74 NED 76
E+
Sbjct: 341 REN 343
>gi|148669493|gb|EDL01440.1| mCG7865 [Mus musculus]
Length = 1349
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 80/141 (56%), Gaps = 4/141 (2%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
+ W LQ L ++++L+ A + G Q L GK G R N+ GKRV+F+G
Sbjct: 306 IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
R+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V NGP+V+PGAN IQ
Sbjct: 366 RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPDVHPGANFIQQRH 425
Query: 594 GSVVRISSSQAVQRESLAKRL 614
+ R + RE +A+ L
Sbjct: 426 MQMKRF--LKYGNREKMAQEL 444
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V NGP+V+PGAN IQ
Sbjct: 363 FSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPDVHPGANFIQ 422
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ R + RE +A+ L
Sbjct: 423 QRHMQMKRF--LKYGNREKMAQEL 444
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+E++Q + ++V S ++ + P G+ D MG SE+ PC TCG N C GH G
Sbjct: 26 EEMRQQAHIQVVSKNLYSQDNNHAPLLYGVLDHRMG-TSEKDRPCETCGKNLADCLGHYG 84
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
+I+L +P + +FR V +L++ C C I + + F++ +K
Sbjct: 85 YIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKQQFLDFLK 130
>gi|354482229|ref|XP_003503302.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
[Cricetulus griseus]
Length = 1280
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 80/141 (56%), Gaps = 4/141 (2%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
+ W LQ L ++++L+ A + G Q L GK G R N+ GKRV+F+G
Sbjct: 306 IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
R+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V NGP+V+PGAN IQ
Sbjct: 366 RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPDVHPGANFIQQRH 425
Query: 594 GSVVRISSSQAVQRESLAKRL 614
+ R + RE +A+ L
Sbjct: 426 MQMKRF--LKYGNREKMAQEL 444
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V NGP+V+PGAN IQ
Sbjct: 363 FSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPDVHPGANFIQ 422
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ R + RE +A+ L
Sbjct: 423 QRHMQMKRF--LKYGNREKMAQEL 444
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+E++Q + ++V S ++ + P G+ D MG SE+ PC TCG N C GH G
Sbjct: 26 EEMRQQAHIQVVSKNLYSQDNNHAPLLYGVLDHRMG-TSEKDRPCETCGKNLADCLGHYG 84
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
+I+L +P + +FR V +L++ C C I + + F++ +K
Sbjct: 85 YIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKQQFLDFLK 130
>gi|449269147|gb|EMC79953.1| DNA-directed RNA polymerase III subunit RPC1, partial [Columba
livia]
Length = 1375
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 80/141 (56%), Gaps = 4/141 (2%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
+ W LQ L ++++L+ A + G Q L GK G R N+ GKRV+F+G
Sbjct: 291 IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 350
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
R+VI+PDP L ID + VP+ AK LT+P V N+ +RK+V NGP+V+PGAN IQ
Sbjct: 351 RTVISPDPNLRIDEVAVPIHVAKILTFPEKVNKANINFMRKLVRNGPDVHPGANFIQQRH 410
Query: 594 GSVVRISSSQAVQRESLAKRL 614
+ R + RE +A+ L
Sbjct: 411 TQMKRF--LKYGNREKMAQEL 429
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP+ AK LT+P V N+ +RK+V NGP+V+PGAN IQ
Sbjct: 348 FSGRTVISPDPNLRIDEVAVPIHVAKILTFPEKVNKANINFMRKLVRNGPDVHPGANFIQ 407
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ R + RE +A+ L
Sbjct: 408 QRHTQMKRF--LKYGNREKMAQEL 429
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 58/106 (54%), Gaps = 3/106 (2%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+E++Q + ++V S ++ H P G+ D MG SE+ PC TCG N C GH G
Sbjct: 11 EEMRQQAHIQVVSKNLYSQDNHHAPLQYGVLDHRMG-TSEKDRPCETCGKNLADCLGHYG 69
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
+I+L +P + +F+ V +L++ C C +I + + F++ +K
Sbjct: 70 YIDLELPCFHVGYFKAVIGILQMICKSCCRIMLSVEEKKQFLDYLK 115
>gi|157741588|gb|ABV69499.1| RNA polymerase II largest subunit, partial [Verrucaria lecideoides]
Length = 977
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 73/114 (64%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 211 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITG 270
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TL YP VT +N+ L+++V NGP ++PGA I E+
Sbjct: 271 DPNLSLDEVGVPRSIARTLIYPETVTRFNIERLKQLVTNGPQMHPGARYIIREN 324
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TL YP VT +N+ L+++V NGP ++PGA I
Sbjct: 262 FSARTVITGDPNLSLDEVGVPRSIARTLIYPETVTRFNIERLKQLVTNGPQMHPGARYII 321
Query: 74 NED 76
E+
Sbjct: 322 REN 324
>gi|139948582|ref|NP_001077219.1| DNA-directed RNA polymerase III subunit RPC1 [Bos taurus]
gi|187611407|sp|A4IF62.1|RPC1_BOVIN RecName: Full=DNA-directed RNA polymerase III subunit RPC1;
Short=RNA polymerase III subunit C1; AltName:
Full=DNA-directed RNA polymerase III subunit A
gi|134024541|gb|AAI34423.1| POLR3A protein [Bos taurus]
gi|296472154|tpg|DAA14269.1| TPA: polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Bos
taurus]
Length = 1390
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 79/141 (56%), Gaps = 4/141 (2%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
+ W LQ L ++++L+ A + G Q L GK G R N+ GKRV+F+G
Sbjct: 306 IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
R+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V NGP V+PGAN IQ
Sbjct: 366 RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQQRH 425
Query: 594 GSVVRISSSQAVQRESLAKRL 614
+ R + RE +A+ L
Sbjct: 426 TQMKRF--LKYGNREKMAQEL 444
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V NGP V+PGAN IQ
Sbjct: 363 FSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQ 422
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ R + RE +A+ L
Sbjct: 423 QRHTQMKRF--LKYGNREKMAQEL 444
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+E++Q + ++V S ++ + P G+ D MG SE+ PC TCG N C GH G
Sbjct: 26 EEMRQQAHIQVVSKNLYSQDNNHSPLLYGVLDHRMG-TSEKDRPCETCGKNLADCLGHYG 84
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
+I+L +P + +FR V +L++ C C I + + F++ +K
Sbjct: 85 YIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKKQFLDYLK 130
>gi|57529842|ref|NP_001006500.1| DNA-directed RNA polymerase III subunit RPC1 [Gallus gallus]
gi|75571385|sp|Q5ZL98.1|RPC1_CHICK RecName: Full=DNA-directed RNA polymerase III subunit RPC1;
Short=RNA polymerase III subunit C1; AltName:
Full=DNA-directed RNA polymerase III subunit A
gi|53130332|emb|CAG31495.1| hypothetical protein RCJMB04_7b9 [Gallus gallus]
Length = 1390
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 80/141 (56%), Gaps = 4/141 (2%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
+ W LQ L ++++L+ A + G Q L GK G R N+ GKRV+F+G
Sbjct: 306 IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
R+VI+PDP L ID + VP+ AK LT+P V N+ +RK+V NGP+V+PGAN IQ
Sbjct: 366 RTVISPDPNLRIDEVAVPIHVAKILTFPEKVNKANINFMRKLVRNGPDVHPGANFIQQRH 425
Query: 594 GSVVRISSSQAVQRESLAKRL 614
+ R + RE +A+ L
Sbjct: 426 TQMKRF--LKYGNREKMAQEL 444
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP+ AK LT+P V N+ +RK+V NGP+V+PGAN IQ
Sbjct: 363 FSGRTVISPDPNLRIDEVAVPIHVAKILTFPEKVNKANINFMRKLVRNGPDVHPGANFIQ 422
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ R + RE +A+ L
Sbjct: 423 QRHTQMKRF--LKYGNREKMAQEL 444
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 58/106 (54%), Gaps = 3/106 (2%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+E++Q + ++V S ++ H P G+ D MG SE+ PC TCG N C GH G
Sbjct: 26 EEMRQQAHIQVVSKNLYSQDNHHAPLQYGVLDHRMG-TSEKDRPCETCGKNLADCLGHYG 84
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
+I+L +P + +F+ V +L++ C C +I + + F++ +K
Sbjct: 85 YIDLELPCFHVGYFKAVIGILQMICKTCCRIMLSVEEKKQFLDYLK 130
>gi|426255838|ref|XP_004021555.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Ovis
aries]
Length = 1390
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 79/141 (56%), Gaps = 4/141 (2%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
+ W LQ L ++++L+ A + G Q L GK G R N+ GKRV+F+G
Sbjct: 306 IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
R+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V NGP V+PGAN IQ
Sbjct: 366 RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQQRH 425
Query: 594 GSVVRISSSQAVQRESLAKRL 614
+ R + RE +A+ L
Sbjct: 426 TQMKRF--LKYGNREKMAQEL 444
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V NGP V+PGAN IQ
Sbjct: 363 FSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQ 422
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ R + RE +A+ L
Sbjct: 423 QRHTQMKRF--LKYGNREKMAQEL 444
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+E++Q + ++V S ++ + P G+ D MG SE+ PC TCG N C GH G
Sbjct: 26 EEMRQQAHIQVVSKNLYSQDNNHAPLLYGVLDHRMG-TSEKDRPCETCGKNLADCLGHYG 84
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
+I+L +P + +FR V +L++ C C I + + F++ +K
Sbjct: 85 YIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKKQFLDYLK 130
>gi|407043155|gb|EKE41776.1| DNA-directed RNA polymerase III largest subunit, putative
[Entamoeba nuttalli P19]
Length = 1379
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 79/137 (57%), Gaps = 1/137 (0%)
Query: 478 NSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVI 537
+SW +L V + ++++L G + + Q L GK G R N++GKRV+F+GR+VI
Sbjct: 325 DSWDQLTVAVSMFINSELPGCDDKGK-PLRAICQRLKGKHGRFRGNLLGKRVDFSGRTVI 383
Query: 538 TPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
+PDP L+I+ IGVP A LTYP VT N+ LR++VING N YPG N I +
Sbjct: 384 SPDPNLDIEQIGVPKLMAVKLTYPERVTKHNIDKLRQLVINGSNNYPGCNSIIGGSDGLR 443
Query: 598 RISSSQAVQRESLAKRL 614
R + RE AK L
Sbjct: 444 RSMCIKLEMREKFAKDL 460
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 48/84 (57%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L+I+ IGVP A LTYP VT N+ LR++VING N YPG N I
Sbjct: 377 FSGRTVISPDPNLDIEQIGVPKLMAVKLTYPERVTKHNIDKLRQLVINGSNNYPGCNSII 436
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ R + RE AK L
Sbjct: 437 GGSDGLRRSMCIKLEMREKFAKDL 460
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 156 PGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCF 215
P G+ D +G + + C TCG +C GH I L +PV + FFR + +L+ C
Sbjct: 70 PNGVLDRRLG-VCDSLSVCETCGKRIEECSGHFAVINLELPVFHIGFFRPIIQVLQCVCK 128
Query: 216 LCHKINIPATSQLLFINQIK 235
C++I + + ++ +++
Sbjct: 129 NCNRILLTNEERDFYLRRMR 148
>gi|206601379|gb|ACI16408.1| RNA polymerase II largest subunit [Polyblastia melaspora]
Length = 354
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 73/114 (64%), Gaps = 3/114 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V MD A L+ + I ++ L GK G RQN+MGKRV+F+ R+VIT
Sbjct: 211 LQYHVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRXRQNLMGKRVDFSARTVITG 270
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
DP L++D +GVP A+TLTYP VT +N++ L+++V GP ++PGA I E+
Sbjct: 271 DPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKELVTRGPEMHPGARYIIREN 324
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 44/63 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VT +N++ L+++V GP ++PGA I
Sbjct: 262 FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKELVTRGPEMHPGARYII 321
Query: 74 NED 76
E+
Sbjct: 322 REN 324
>gi|67476290|ref|XP_653748.1| DNA-directed RNA polymerase III largest subunit [Entamoeba
histolytica HM-1:IMSS]
gi|56470729|gb|EAL48362.1| DNA-directed RNA polymerase III largest subunit, putative
[Entamoeba histolytica HM-1:IMSS]
gi|449705808|gb|EMD45780.1| DNA-directed RNA polymerase III largest subunit, putative
[Entamoeba histolytica KU27]
Length = 1379
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 79/137 (57%), Gaps = 1/137 (0%)
Query: 478 NSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVI 537
+SW +L V + ++++L G + + Q L GK G R N++GKRV+F+GR+VI
Sbjct: 325 DSWDQLTVAVSMFINSELPGCDDKGK-PLRAICQRLKGKHGRFRGNLLGKRVDFSGRTVI 383
Query: 538 TPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
+PDP L+I+ IGVP A LTYP VT N+ LR++VING N YPG N I +
Sbjct: 384 SPDPNLDIEQIGVPKLMAVKLTYPERVTKHNIDKLRQLVINGSNNYPGCNSIIGGSDGLR 443
Query: 598 RISSSQAVQRESLAKRL 614
R + RE AK L
Sbjct: 444 RSMCIKLEMREKFAKDL 460
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 48/84 (57%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L+I+ IGVP A LTYP VT N+ LR++VING N YPG N I
Sbjct: 377 FSGRTVISPDPNLDIEQIGVPKLMAVKLTYPERVTKHNIDKLRQLVINGSNNYPGCNSII 436
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ R + RE AK L
Sbjct: 437 GGSDGLRRSMCIKLEMREKFAKDL 460
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 156 PGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCF 215
P G+ D +G + + C TCG +C GH I L +PV + FFR + +L+ C
Sbjct: 70 PNGVLDRRLG-VCDSLSVCETCGKRIEECSGHFAVINLELPVFHIGFFRPIIQVLQCVCK 128
Query: 216 LCHKINIPATSQLLFINQIK 235
C++I + + ++ +++
Sbjct: 129 NCNRILLTNEERDFYLRRMR 148
>gi|394998775|gb|AFN44306.1| RNA polymerase II largest subunit, partial [Teloschistes exilis]
Length = 355
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 76/131 (58%), Gaps = 3/131 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQ++V MD A L I ++ L GK G +R N+MGKRV+F+ R+VIT
Sbjct: 211 LQFHVATYMDNNIAGLGQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITG 270
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
DP L++D +GVP AKTLTYP VTP+N+ L ++V NGPN +PGA + + G + +
Sbjct: 271 DPNLSLDEVGVPRSIAKTLTYPETVTPYNIQKLHQLVKNGPNEHPGAKYVIRDSGERIDL 330
Query: 600 SSSQAVQRESL 610
+ SL
Sbjct: 331 RHHKRAGEISL 341
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 49/80 (61%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP AKTLTYP VTP+N+ L ++V NGPN +PGA +
Sbjct: 262 FSARTVITGDPNLSLDEVGVPRSIAKTLTYPETVTPYNIQKLHQLVKNGPNEHPGAKYVI 321
Query: 74 NEDGSVVRISSSQAVQRESL 93
+ G + + + SL
Sbjct: 322 RDSGERIDLRHHKRAGEISL 341
>gi|124486963|ref|NP_001074716.1| DNA-directed RNA polymerase III subunit RPC1 [Mus musculus]
gi|187956633|gb|AAI51169.1| Polymerase (RNA) III (DNA directed) polypeptide A [Mus musculus]
gi|187956659|gb|AAI51170.1| Polymerase (RNA) III (DNA directed) polypeptide A [Mus musculus]
gi|223462631|gb|AAI51003.1| Polymerase (RNA) III (DNA directed) polypeptide A [Mus musculus]
Length = 1390
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 80/141 (56%), Gaps = 4/141 (2%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
+ W LQ L ++++L+ A + G Q L GK G R N+ GKRV+F+G
Sbjct: 306 IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
R+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V NGP+V+PGAN IQ
Sbjct: 366 RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPDVHPGANFIQQRH 425
Query: 594 GSVVRISSSQAVQRESLAKRL 614
+ R + RE +A+ L
Sbjct: 426 MQMKRF--LKYGNREKMAQEL 444
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V NGP+V+PGAN IQ
Sbjct: 363 FSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPDVHPGANFIQ 422
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ R + RE +A+ L
Sbjct: 423 QRHMQMKRF--LKYGNREKMAQEL 444
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+E++Q + ++V S ++ + P G+ D MG SE+ PC TCG N C GH G
Sbjct: 26 EEMRQQAHIQVVSKNLYSQDNNHAPLLYGVLDHRMG-TSEKDRPCETCGKNLADCLGHYG 84
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
+I+L +P + +FR V +L++ C C I + + F++ +K
Sbjct: 85 YIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKQQFLDFLK 130
>gi|348576170|ref|XP_003473860.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like [Cavia
porcellus]
Length = 1390
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 79/141 (56%), Gaps = 4/141 (2%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
+ W LQ L ++++L+ A + G Q L GK G R N+ GKRV+F+G
Sbjct: 306 IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
R+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V NGP V+PGAN IQ
Sbjct: 366 RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQQRH 425
Query: 594 GSVVRISSSQAVQRESLAKRL 614
+ R + RE +A+ L
Sbjct: 426 TQMKRF--LKYGNREKMAQEL 444
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V NGP V+PGAN IQ
Sbjct: 363 FSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQ 422
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ R + RE +A+ L
Sbjct: 423 QRHTQMKRF--LKYGNREKMAQEL 444
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 3/106 (2%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+E++Q + ++V S ++ P G+ D MG SE+ PC TCG N C GH G
Sbjct: 26 EEMRQQAHIQVVSKNLYSQDNSHAPLLHGVLDHRMG-TSEKDRPCETCGKNLADCLGHYG 84
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
+I+L +P + +FR V +L++ C C I + + F++ +K
Sbjct: 85 YIDLELPCFHVGYFRAVIGVLQMICKTCCHILLSREERQQFLDHLK 130
>gi|394998777|gb|AFN44307.1| RNA polymerase II largest subunit, partial [Teloschistes flavicans]
Length = 357
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 76/131 (58%), Gaps = 3/131 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQ++V MD A L I ++ L GK G +R N+MGKRV+F+ R+VIT
Sbjct: 213 LQFHVATYMDNNIAGLGQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITG 272
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
DP L++D +GVP AKTLTYP VTP+N+ L ++V NGPN +PGA + + G + +
Sbjct: 273 DPNLSLDEVGVPRSIAKTLTYPETVTPYNIQKLHQLVKNGPNEHPGAKYVIRDSGERIDL 332
Query: 600 SSSQAVQRESL 610
+ SL
Sbjct: 333 RHHKRAGEISL 343
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 49/80 (61%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP AKTLTYP VTP+N+ L ++V NGPN +PGA +
Sbjct: 264 FSARTVITGDPNLSLDEVGVPRSIAKTLTYPETVTPYNIQKLHQLVKNGPNEHPGAKYVI 323
Query: 74 NEDGSVVRISSSQAVQRESL 93
+ G + + + SL
Sbjct: 324 RDSGERIDLRHHKRAGEISL 343
>gi|113707382|gb|ABI36590.1| RNA polymerase II largest subunit [Teloschistes exilis]
Length = 1003
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 72/118 (61%), Gaps = 3/118 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQ++V MD A L I ++ L GK G +R N+MGKRV+F+ R+VIT
Sbjct: 220 LQFHVATYMDNNIAGLGQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITG 279
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L++D +GVP AKTLTYP VTP+N+ L ++V NGPN +PGA + + G +
Sbjct: 280 DPNLSLDEVGVPRSIAKTLTYPETVTPYNIQKLHQLVKNGPNEHPGAKYVIRDSGERI 337
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 45/67 (67%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP AKTLTYP VTP+N+ L ++V NGPN +PGA +
Sbjct: 271 FSARTVITGDPNLSLDEVGVPRSIAKTLTYPETVTPYNIQKLHQLVKNGPNEHPGAKYVI 330
Query: 74 NEDGSVV 80
+ G +
Sbjct: 331 RDSGERI 337
>gi|109503668|ref|XP_001056048.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Rattus
norvegicus]
gi|392353748|ref|XP_341389.5| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Rattus
norvegicus]
Length = 1390
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 80/141 (56%), Gaps = 4/141 (2%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
+ W LQ L ++++L+ A + G Q L GK G R N+ GKRV+F+G
Sbjct: 306 IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
R+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V NGP+V+PGAN IQ
Sbjct: 366 RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPDVHPGANFIQQRH 425
Query: 594 GSVVRISSSQAVQRESLAKRL 614
+ R + RE +A+ L
Sbjct: 426 MQMKRF--LKYGNREKMAQEL 444
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V NGP+V+PGAN IQ
Sbjct: 363 FSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPDVHPGANFIQ 422
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ R + RE +A+ L
Sbjct: 423 QRHMQMKRF--LKYGNREKMAQEL 444
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+E++Q + ++V S ++ + P G+ D MG SE+ PC TCG N C GH G
Sbjct: 26 EEMRQQAHIQVVSKNLYSQDNNHAPLLYGVLDHRMG-TSEKDRPCETCGKNLADCLGHYG 84
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
+I+L +P + +FR V +L++ C C I + + F++ +K
Sbjct: 85 YIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKQQFLDFLK 130
>gi|358385218|gb|EHK22815.1| hypothetical protein TRIVIDRAFT_28982 [Trichoderma virens Gv29-8]
Length = 1465
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 109/232 (46%), Gaps = 32/232 (13%)
Query: 372 DFKKLWTNEHLFLKCLIPVLDTTKELIATD------IMFIRSLV-VPPNNLRPLSMEQMP 424
D LW H K + P T EL+ D MFI V PP +RP ++
Sbjct: 230 DLNPLWVLNHF--KMITP---TDCELLGLDPSEGRPEMFIWQFVPAPPVCIRPSVAQEGA 284
Query: 425 PVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQ 484
E I+Y G +++ + K K ++ + W LQ
Sbjct: 285 STEDDLTAKLAEIVYISGLIRTALN--KGKPMQTIMEQ-----------------WEYLQ 325
Query: 485 YNVDLLMDAKL-NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYL 543
+ + +++ + +N+ I G Q L GK G R N+ GKRV+F+GR+VI+PDP L
Sbjct: 326 LQIAMYVNSDVPGLNQPGFGKSIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNL 385
Query: 544 NIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGS 595
I+ + VP AK LT+P V N+ LR+ ++NGP V+PGAN + ++G+
Sbjct: 386 GINQVAVPQLVAKNLTFPERVQNQNLEKLRQCILNGPKVWPGANHVIKDNGN 437
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 43/65 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L I+ + VP AK LT+P V N+ LR+ ++NGP V+PGAN +
Sbjct: 373 FSGRTVISPDPNLGINQVAVPQLVAKNLTFPERVQNQNLEKLRQCILNGPKVWPGANHVI 432
Query: 74 NEDGS 78
++G+
Sbjct: 433 KDNGN 437
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 3/114 (2%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGPISERGDPCTTCGNNY 181
+K ++Q++ V++V + ++ + P G DL MG S+ G C TC
Sbjct: 25 IKFGIQSNQDIVNQGVLEVSQRMLYDIDNNRSPLINGALDLRMGTSSKSGK-CGTCQEPL 83
Query: 182 TKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
C GH GH+ L +P + + R +Q +L+ C C K+ + + F+ ++
Sbjct: 84 KFCIGHFGHVRLALPAFHIGYLRFIQTILQNVCKTCAKVLLTEEERRSFLQDLR 137
>gi|323457244|gb|EGB13110.1| hypothetical protein AURANDRAFT_35850 [Aureococcus anophagefferens]
Length = 1398
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 95/191 (49%), Gaps = 18/191 (9%)
Query: 403 MFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSE 462
+ +++L+VPP +RP P G + +K +E D+ S
Sbjct: 228 LVLKTLLVPPTPIRPSVAVDSP---------------GGGGSNEDDLTIKLQEIIDVNSA 272
Query: 463 ALKGIRGDTLNNKLQNSWHELQYNVDLLMDAK---LNINKTTGAHQIDGLKQMLDGKTGM 519
+ IR + W+ LQ V L ++ + L A I GL Q L GK+G
Sbjct: 273 LRQAIRKGGSMKMIVEGWNFLQVQVALYLNGEVPGLQPRNAPAAKPIRGLCQRLKGKSGR 332
Query: 520 IRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVING 579
R N+ GKRV+F+ R+VI+PDP L +D +GVP E AK +TYP V N+ L+K+V+ G
Sbjct: 333 FRGNLSGKRVDFSARTVISPDPNLRVDQVGVPQEVAKIMTYPEKVNALNLEKLQKLVVAG 392
Query: 580 PNVYPGANMIQ 590
+PGAN ++
Sbjct: 393 QKQWPGANYVE 403
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 40/60 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L +D +GVP E AK +TYP V N+ L+K+V+ G +PGAN ++
Sbjct: 344 FSARTVISPDPNLRVDQVGVPQEVAKIMTYPEKVNALNLEKLQKLVVAGQKQWPGANYVE 403
Score = 45.4 bits (106), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 156 PGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCF 215
P G DL +G +++ C TC +C GH G + L +PV + +F+ V +L+ C
Sbjct: 24 PNGCLDLRLGAANKQ-TACATCHKRVDQCAGHFGVVRLELPVFHVGYFKHVLTILQCVCK 82
Query: 216 LCHK 219
C +
Sbjct: 83 ECSR 86
>gi|156717272|ref|NP_001096178.1| polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Xenopus
(Silurana) tropicalis]
gi|134025743|gb|AAI35597.1| polr3a protein [Xenopus (Silurana) tropicalis]
Length = 1390
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 81/141 (57%), Gaps = 4/141 (2%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
+ W LQ L ++++L+ A + G Q L GK G R N+ GKRV+F+G
Sbjct: 305 IMEDWDFLQLQCALYINSELSGIPMNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 364
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
R+VI+PDP L ID + VP+ AK LT+P V N+ L+RK+V NGP+V+PGAN IQ
Sbjct: 365 RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNQANMQLMRKLVQNGPDVHPGANFIQQRH 424
Query: 594 GSVVRISSSQAVQRESLAKRL 614
+ R + RE +A+ L
Sbjct: 425 TQMKRF--LKYGNREKIAQEL 443
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP+ AK LT+P V N+ L+RK+V NGP+V+PGAN IQ
Sbjct: 362 FSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNQANMQLMRKLVQNGPDVHPGANFIQ 421
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ R + RE +A+ L
Sbjct: 422 QRHTQMKRF--LKYGNREKIAQEL 443
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 59/106 (55%), Gaps = 3/106 (2%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
++++Q + +++ S ++ + P G+ D MG SE+ C TCG N +C GH G
Sbjct: 25 EQMRQQAHIQIVSKSLYSQDNNHTPLAFGVLDHRMG-TSEKDRHCQTCGKNLAECLGHYG 83
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
+++L +P + +F+ V +L++ C C +I + A + F++ +K
Sbjct: 84 YLDLELPCFHVGYFKAVIGILQMICKTCSRILLNAEERKQFLDFLK 129
>gi|303389791|ref|XP_003073127.1| DNA-directed RNA polymerase subunit alpha [Encephalitozoon
intestinalis ATCC 50506]
gi|303302272|gb|ADM11767.1| DNA-directed RNA polymerase subunit alpha [Encephalitozoon
intestinalis ATCC 50506]
Length = 1315
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 104/191 (54%), Gaps = 21/191 (10%)
Query: 403 MFIRSLVVPPNNLRP-LSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLS 461
+ I+S++VPP+ +RP +SM+ E I+++ NK +L
Sbjct: 229 LIIQSIIVPPSCIRPSVSMDDEGTNEDDITIKISEIVHT------------NK----VLK 272
Query: 462 EALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIR 521
E ++ +G+ LN + W LQ LL++++L G I G+ Q L GK G R
Sbjct: 273 EGIE--KGNPLN-LINEDWDHLQLQCALLINSELPQVGIPG-QPIRGIVQRLKGKNGRFR 328
Query: 522 QNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPN 581
N+ GKRV+F+GR+VI+PDP L+I+ +G+P AK LT VT +N L+ +V+NGP
Sbjct: 329 CNLSGKRVDFSGRTVISPDPNLSIEEVGIPERMAKILTISERVTSFNKKKLQALVLNGPE 388
Query: 582 VYPGANMIQNE 592
YPGAN + E
Sbjct: 389 KYPGANYVVGE 399
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 40/62 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L+I+ +G+P AK LT VT +N L+ +V+NGP YPGAN +
Sbjct: 338 FSGRTVISPDPNLSIEEVGIPERMAKILTISERVTSFNKKKLQALVLNGPEKYPGANYVV 397
Query: 74 NE 75
E
Sbjct: 398 GE 399
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 155 IPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSC 214
+P G DL +G + + D C TCG C GH G ++L +PV N ++ L C
Sbjct: 49 LPNGPLDLRLG-VGNKKDKCATCGEGLATCIGHFGEVKLVLPVFNIGLVKNTISTLNCLC 107
Query: 215 FLCHKI 220
C I
Sbjct: 108 KSCGSI 113
>gi|410975432|ref|XP_003994136.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Felis
catus]
Length = 1390
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 79/141 (56%), Gaps = 4/141 (2%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
+ W LQ L ++++L+ A + G Q L GK G R N+ GKRV+F+G
Sbjct: 306 IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
R+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V NGP V+PGAN IQ
Sbjct: 366 RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQQRH 425
Query: 594 GSVVRISSSQAVQRESLAKRL 614
+ R + RE +A+ L
Sbjct: 426 TQMKRF--LKYGNREKMAQEL 444
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V NGP V+PGAN IQ
Sbjct: 363 FSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQ 422
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ R + RE +A+ L
Sbjct: 423 QRHTQMKRF--LKYGNREKMAQEL 444
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+E++Q + ++V S ++ + P G+ D MG SE+ PC TCG N C GH G
Sbjct: 26 EEMRQQAHIQVVSKNLYSQDNNHAPLLYGVLDHRMG-TSEKDRPCETCGKNLADCLGHYG 84
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
+I+L +P + +FR V +L++ C C I + + F++ +K
Sbjct: 85 YIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKKQFLDYLK 130
>gi|296220277|ref|XP_002756253.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 isoform 1
[Callithrix jacchus]
Length = 1390
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 79/141 (56%), Gaps = 4/141 (2%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
+ W LQ L ++++L+ A + G Q L GK G R N+ GKRV+F+G
Sbjct: 306 IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
R+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V NGP V+PGAN IQ
Sbjct: 366 RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQQRH 425
Query: 594 GSVVRISSSQAVQRESLAKRL 614
+ R + RE +A+ L
Sbjct: 426 TQMKRF--LKYGNREKMAQEL 444
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V NGP V+PGAN IQ
Sbjct: 363 FSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQ 422
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ R + RE +A+ L
Sbjct: 423 QRHTQMKRF--LKYGNREKMAQEL 444
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 3/106 (2%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+E++Q + ++V S ++ P G+ D MG SE+ PC TCG N C GH G
Sbjct: 26 EEMRQQAHIQVVSKNLYSQDNQHAPLLYGVLDHRMG-TSEKDRPCETCGKNLADCLGHYG 84
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
+I+L +P + +FR V +L++ C C I + + F++ +K
Sbjct: 85 YIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKKQFLDYLK 130
>gi|149690349|ref|XP_001504046.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Equus
caballus]
Length = 1390
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 79/141 (56%), Gaps = 4/141 (2%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
+ W LQ L ++++L+ A + G Q L GK G R N+ GKRV+F+G
Sbjct: 306 IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
R+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V NGP V+PGAN IQ
Sbjct: 366 RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQQRH 425
Query: 594 GSVVRISSSQAVQRESLAKRL 614
+ R + RE +A+ L
Sbjct: 426 TQMKRF--LKYGNREKMAQEL 444
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V NGP V+PGAN IQ
Sbjct: 363 FSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQ 422
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ R + RE +A+ L
Sbjct: 423 QRHTQMKRF--LKYGNREKMAQEL 444
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+E++Q + ++V S ++ + P G+ D MG SE+ PC TCG N C GH G
Sbjct: 26 EEMRQQAHIQVVSKNLYSQDNNHAPLLYGVLDHRMG-TSEKDRPCETCGKNLADCLGHYG 84
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
+I+L +P + +FR V +L++ C C I + + F++ +K
Sbjct: 85 YIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKKQFLDYLK 130
>gi|351708991|gb|EHB11910.1| DNA-directed RNA polymerase III subunit RPC1 [Heterocephalus
glaber]
Length = 1392
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 79/141 (56%), Gaps = 4/141 (2%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
+ W LQ L ++++L+ A + G Q L GK G R N+ GKRV+F+G
Sbjct: 306 IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
R+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V NGP V+PGAN IQ
Sbjct: 366 RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQQRH 425
Query: 594 GSVVRISSSQAVQRESLAKRL 614
+ R + RE +A+ L
Sbjct: 426 TQMKRF--LKYGNREKMAQEL 444
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V NGP V+PGAN IQ
Sbjct: 363 FSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQ 422
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ R + RE +A+ L
Sbjct: 423 QRHTQMKRF--LKYGNREKMAQEL 444
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+E++Q + ++V S ++ + P G+ D MG SE+ PC TCG N C GH G
Sbjct: 26 EEMRQQAHIQVVSKNLYSQDNNHAPLLYGVLDHRMG-TSEKDRPCETCGKNLADCLGHYG 84
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
+I+L +P + +FR V +L++ C C I + + F++ +K
Sbjct: 85 YIDLELPCFHVGYFRAVIGILQMICKTCCHILLSKEEKQQFLDHLK 130
>gi|403297971|ref|XP_003939815.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Saimiri
boliviensis boliviensis]
Length = 1390
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 79/141 (56%), Gaps = 4/141 (2%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
+ W LQ L ++++L+ A + G Q L GK G R N+ GKRV+F+G
Sbjct: 306 IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
R+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V NGP V+PGAN IQ
Sbjct: 366 RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQQRH 425
Query: 594 GSVVRISSSQAVQRESLAKRL 614
+ R + RE +A+ L
Sbjct: 426 TQMKRF--LKYGNREKMAQEL 444
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V NGP V+PGAN IQ
Sbjct: 363 FSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQ 422
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ R + RE +A+ L
Sbjct: 423 QRHTQMKRF--LKYGNREKMAQEL 444
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 3/106 (2%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+E++Q + ++V S ++ P G+ D MG SE+ PC TCG N C GH G
Sbjct: 26 EEMRQQAHIQVVSKNLYSQDNQHAPLLYGVLDHRMG-TSEKDRPCETCGKNLADCLGHYG 84
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
+I+L +P + +FR V +L++ C C I + + F++ +K
Sbjct: 85 YIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKKQFLDYLK 130
>gi|73953679|ref|XP_536399.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Canis
lupus familiaris]
Length = 1390
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 79/141 (56%), Gaps = 4/141 (2%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
+ W LQ L ++++L+ A + G Q L GK G R N+ GKRV+F+G
Sbjct: 306 IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
R+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V NGP V+PGAN IQ
Sbjct: 366 RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQQRH 425
Query: 594 GSVVRISSSQAVQRESLAKRL 614
+ R + RE +A+ L
Sbjct: 426 TQMKRF--LKYGNREKMAQEL 444
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V NGP V+PGAN IQ
Sbjct: 363 FSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQ 422
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ R + RE +A+ L
Sbjct: 423 QRHTQMKRF--LKYGNREKMAQEL 444
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+E++Q + ++V S ++ + P G+ D MG SE+ PC TCG N C GH G
Sbjct: 26 EEMRQQAHIQVVSKNLYSQDNNHAPLLYGVLDHRMG-TSEKDRPCETCGKNLADCLGHYG 84
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
+I+L +P + +FR V +L++ C C I + + F++ +K
Sbjct: 85 YIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKKQFLDYLK 130
>gi|39725938|ref|NP_008986.2| DNA-directed RNA polymerase III subunit RPC1 [Homo sapiens]
gi|206729892|sp|O14802.2|RPC1_HUMAN RecName: Full=DNA-directed RNA polymerase III subunit RPC1;
Short=RNA polymerase III subunit C1; AltName:
Full=DNA-directed RNA polymerase III largest subunit;
AltName: Full=DNA-directed RNA polymerase III subunit A;
AltName: Full=RNA polymerase III 155 kDa subunit;
Short=RPC155; AltName: Full=RNA polymerase III subunit
C160
gi|26996801|gb|AAH41089.1| Polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Homo
sapiens]
gi|119575002|gb|EAW54617.1| polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Homo
sapiens]
gi|168277638|dbj|BAG10797.1| DNA-directed RNA polymerase III subunit RPC1 [synthetic construct]
Length = 1390
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 79/141 (56%), Gaps = 4/141 (2%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
+ W LQ L ++++L+ A + G Q L GK G R N+ GKRV+F+G
Sbjct: 306 IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
R+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V NGP V+PGAN IQ
Sbjct: 366 RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQQRH 425
Query: 594 GSVVRISSSQAVQRESLAKRL 614
+ R + RE +A+ L
Sbjct: 426 TQMKRF--LKYGNREKMAQEL 444
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V NGP V+PGAN IQ
Sbjct: 363 FSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQ 422
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ R + RE +A+ L
Sbjct: 423 QRHTQMKRF--LKYGNREKMAQEL 444
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 3/106 (2%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+E++Q + ++V S ++ P G+ D MG SE+ PC TCG N C GH G
Sbjct: 26 EEMRQQAHIQVVSKNLYSQDNQHAPLLYGVLDHRMG-TSEKDRPCETCGKNLADCLGHYG 84
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
+I+L +P + +FR V +L++ C C I + + F++ +K
Sbjct: 85 YIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKKQFLDYLK 130
>gi|407925500|gb|EKG18511.1| RNA polymerase II heptapeptide repeat eukaryotic [Macrophomina
phaseolina MS6]
Length = 1756
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 75/120 (62%), Gaps = 3/120 (2%)
Query: 483 LQYNVDLLMDAKLNIN---KTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQ++V MD L + + ++ L GK G +R N+MGKRV+F+ R+VIT
Sbjct: 310 LQWHVATYMDNDLAGQPQAQQKSGRALKTIRGRLKGKDGRLRGNLMGKRVDFSARTVITG 369
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
DP L++D +GVP A+TLTYP VTP+N+ L ++V NGPN +PGA + +DG+ + +
Sbjct: 370 DPNLDLDEVGVPRSIARTLTYPETVTPFNIAKLHELVKNGPNEHPGAKYVIRDDGTRIDL 429
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N+ L ++V NGPN +PGA +
Sbjct: 361 FSARTVITGDPNLDLDEVGVPRSIARTLTYPETVTPFNIAKLHELVKNGPNEHPGAKYVI 420
Query: 74 NEDGSVVRI 82
+DG+ + +
Sbjct: 421 RDDGTRIDL 429
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 133 EVKQLSVVKVFSPITFNSLGHT-IPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHI 191
E++++SV + P T + GGL D +G I +R C TCG N +C GH GHI
Sbjct: 28 EIQEMSVAHIIYPETMDEAKQRPREGGLNDPKLGSI-DRAYSCATCGENMQECPGHFGHI 86
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLD 238
EL PV + F ++ LL+ C C KI + S+ F + ++L D
Sbjct: 87 ELHTPVFHVGFINKIKKLLECVCHNCGKI-LGDESEHQFKDALRLRD 132
>gi|261189983|ref|XP_002621402.1| DNA-directed RNA polymerase II largest subunit [Ajellomyces
dermatitidis SLH14081]
gi|239591638|gb|EEQ74219.1| DNA-directed RNA polymerase II largest subunit [Ajellomyces
dermatitidis SLH14081]
gi|239612830|gb|EEQ89817.1| DNA-directed RNA polymerase II largest subunit [Ajellomyces
dermatitidis ER-3]
gi|327351995|gb|EGE80852.1| DNA-directed RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
Length = 1746
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 75/123 (60%), Gaps = 13/123 (10%)
Query: 483 LQYNVDLLMDAKLNINKTTGAHQ--------IDGLKQMLDGKTGMIRQNMMGKRVNFAGR 534
LQY+V MD N G Q + ++ L GK G +RQN+MGKRV+F+ R
Sbjct: 313 LQYHVATYMD-----NDIAGQPQAMQKSNRPVKAIRGRLKGKEGRLRQNLMGKRVDFSAR 367
Query: 535 SVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDG 594
+VIT DP L++D +GVPL A+TLTYP VTP+N+ L ++V NGP+++PGA + G
Sbjct: 368 TVITGDPNLSLDEVGVPLSIAQTLTYPEVVTPFNIAKLGELVDNGPDIHPGARYVIRNTG 427
Query: 595 SVV 597
+
Sbjct: 428 ERI 430
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 46/67 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVPL A+TLTYP VTP+N+ L ++V NGP+++PGA +
Sbjct: 364 FSARTVITGDPNLSLDEVGVPLSIAQTLTYPEVVTPFNIAKLGELVDNGPDIHPGARYVI 423
Query: 74 NEDGSVV 80
G +
Sbjct: 424 RNTGERI 430
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHT-IPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
+E+K++SVV V P T + GL D +G I +R C TC C GH GH
Sbjct: 27 EEIKRMSVVHVEYPETMDEQRQRPREKGLNDPRLGTI-DRNWRCATCEEGINDCPGHFGH 85
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQ-----LLFINQIKLLDA 239
IEL PV + F ++ LL+ C C KI T Q L F + + DA
Sbjct: 86 IELSTPVFHIGFLTKIKKLLETVCHNCGKIKANTTDQKYLEALRFRDPKRRFDA 139
>gi|417406396|gb|JAA49858.1| Putative rna polymerase i large subunit [Desmodus rotundus]
Length = 1390
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 79/141 (56%), Gaps = 4/141 (2%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
+ W LQ L ++++L+ A + G Q L GK G R N+ GKRV+F+G
Sbjct: 306 IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
R+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V NGP V+PGAN IQ
Sbjct: 366 RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQQRH 425
Query: 594 GSVVRISSSQAVQRESLAKRL 614
+ R + RE +A+ L
Sbjct: 426 TQMKRF--LKYGNREKMAQEL 444
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V NGP V+PGAN IQ
Sbjct: 363 FSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQ 422
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ R + RE +A+ L
Sbjct: 423 QRHTQMKRF--LKYGNREKMAQEL 444
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+E++Q + ++V S ++ + P G+ D MG SE+ PC TCG N C GH G
Sbjct: 26 EEMRQQAHIQVVSKNLYSQDNNHAPLLYGVLDHRMG-TSEKDRPCETCGKNLADCLGHYG 84
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
+I+L +P + +FR V +L++ C C I + + F++ +K
Sbjct: 85 YIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKKQFLDYLK 130
>gi|301765986|ref|XP_002918413.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
[Ailuropoda melanoleuca]
Length = 1390
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 79/141 (56%), Gaps = 4/141 (2%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
+ W LQ L ++++L+ A + G Q L GK G R N+ GKRV+F+G
Sbjct: 306 IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
R+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V NGP V+PGAN IQ
Sbjct: 366 RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQQRH 425
Query: 594 GSVVRISSSQAVQRESLAKRL 614
+ R + RE +A+ L
Sbjct: 426 TQMKRF--LKYGNREKMAQEL 444
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V NGP V+PGAN IQ
Sbjct: 363 FSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQ 422
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ R + RE +A+ L
Sbjct: 423 QRHTQMKRF--LKYGNREKMAQEL 444
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+E++Q + ++V S ++ + P G+ D MG SE+ PC TCG N C GH G
Sbjct: 26 EEMRQQAHIQVVSKNLYSQDNNHAPLLYGVLDHRMG-TSEKDRPCETCGKNLADCLGHYG 84
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
+I+L +P + +FR V +L++ C C I + + F++ +K
Sbjct: 85 YIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSHEEKKQFLDYLK 130
>gi|395820429|ref|XP_003783569.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Otolemur
garnettii]
Length = 1390
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 79/141 (56%), Gaps = 4/141 (2%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
+ W LQ L ++++L+ A + G Q L GK G R N+ GKRV+F+G
Sbjct: 306 IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
R+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V NGP V+PGAN IQ
Sbjct: 366 RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQQRH 425
Query: 594 GSVVRISSSQAVQRESLAKRL 614
+ R + RE +A+ L
Sbjct: 426 TQMKRF--LKYGNREKMAQEL 444
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V NGP V+PGAN IQ
Sbjct: 363 FSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQ 422
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ R + RE +A+ L
Sbjct: 423 QRHTQMKRF--LKYGNREKMAQEL 444
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+E++Q + ++V S ++ H P G+ D MG SE+ PC TCG N C GH G
Sbjct: 26 EEMRQQAHIQVVSKNLYSQDNHHTPLLYGVLDHRMG-TSEKDRPCETCGKNLADCLGHYG 84
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
+I+L +P + +FR V +L++ C C I + + F++ +K
Sbjct: 85 YIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEERKQFLDYLK 130
>gi|2460208|gb|AAB86536.1| RNA polymerase III largest subunit [Homo sapiens]
Length = 1391
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 79/141 (56%), Gaps = 4/141 (2%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
+ W LQ L ++++L+ A + G Q L GK G R N+ GKRV+F+G
Sbjct: 306 IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
R+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V NGP V+PGAN IQ
Sbjct: 366 RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQQRH 425
Query: 594 GSVVRISSSQAVQRESLAKRL 614
+ R + RE +A+ L
Sbjct: 426 TQMKRF--LKYGNREKMAQEL 444
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V NGP V+PGAN IQ
Sbjct: 363 FSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQ 422
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ R + RE +A+ L
Sbjct: 423 QRHTQMKRF--LKYGNREKMAQEL 444
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 3/106 (2%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+E++Q + ++V S ++ P G+ D MG SE+ PC TCG N C GH G
Sbjct: 26 EEMRQQAHIQVVSKNLYSQDNQHAPLLYGVLDHRMG-TSEKDRPCETCGKNLADCLGHYG 84
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
+I+L +P + +FR V +L++ C C I + + F++ +K
Sbjct: 85 YIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKKQFLDYLK 130
>gi|401825605|ref|XP_003886897.1| RNA polymerase II large subunit Rpb1 [Encephalitozoon hellem ATCC
50504]
gi|392998054|gb|AFM97916.1| RNA polymerase II large subunit Rpb1 [Encephalitozoon hellem ATCC
50504]
Length = 1557
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 75/208 (36%), Positives = 108/208 (51%), Gaps = 27/208 (12%)
Query: 403 MFIRSLVVPPNNLRP-LSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLS 461
M + L+VPP ++RP + ME E I+ S G LK EQ
Sbjct: 205 MILTVLLVPPPSVRPSIVMEGSLRGEDDLTHKLADIIKSNGYLKKY-------EQ----- 252
Query: 462 EALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDG-----LKQMLDGK 516
+G G + + Q LQ++V L+D +I A Q G L L GK
Sbjct: 253 ---EGAPGHIVRDYEQ----LLQFHVATLIDN--DIGGQPQALQKSGRPLKSLSARLKGK 303
Query: 517 TGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMV 576
G IR N+MGKRV+F+ R+VITPDP L+++ +GVPLE AK T+P VT +N+ L K+V
Sbjct: 304 EGRIRGNLMGKRVDFSARTVITPDPNLSLEEVGVPLEVAKIHTFPEKVTSFNIDRLEKLV 363
Query: 577 INGPNVYPGANMIQNEDGSVVRISSSQA 604
GPN +PGAN + DG + ++ +++
Sbjct: 364 RTGPNEHPGANYVLRSDGQKIDLNFNKS 391
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 50/74 (67%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+++ +GVPLE AK T+P VT +N+ L K+V GPN +PGAN +
Sbjct: 318 FSARTVITPDPNLSLEEVGVPLEVAKIHTFPEKVTSFNIDRLEKLVRTGPNEHPGANYVL 377
Query: 74 NEDGSVVRISSSQA 87
DG + ++ +++
Sbjct: 378 RSDGQKIDLNFNKS 391
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 2/117 (1%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
++ ++ +E++ S + P S G GGL DL MG ++R C +CG +
Sbjct: 13 IQFGLFSPEEIRNGSAALIVHPEVMES-GVPKVGGLIDLRMG-TTDRMYLCQSCGGDNFS 70
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAG 240
C GH GHIEL P+ + + ++ +L+ CF C KI IP +N + + G
Sbjct: 71 CPGHFGHIELTKPMFHVGYISKIKKVLECVCFYCSKIKIPKRGAKSTLNSVWSMSKG 127
>gi|221043166|dbj|BAH13260.1| unnamed protein product [Homo sapiens]
Length = 1369
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 79/141 (56%), Gaps = 4/141 (2%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
+ W LQ L ++++L+ A + G Q L GK G R N+ GKRV+F+G
Sbjct: 306 IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
R+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V NGP V+PGAN IQ
Sbjct: 366 RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQQRH 425
Query: 594 GSVVRISSSQAVQRESLAKRL 614
+ R + RE +A+ L
Sbjct: 426 TQMKRF--LKYGNREKMAQEL 444
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V NGP V+PGAN IQ
Sbjct: 363 FSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQ 422
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ R + RE +A+ L
Sbjct: 423 QRHTQMKRF--LKYGNREKMAQEL 444
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 3/106 (2%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+E++Q + ++V S ++ P G+ D MG SE+ PC TCG N C GH G
Sbjct: 26 EEMRQQAHIQVVSKNLYSQDNQHAPLLYGVLDHRMG-TSEKDRPCETCGKNLADCLGHYG 84
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
+I+L +P + +FR V +L++ C C I + + F++ +K
Sbjct: 85 YIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKKQFLDYLK 130
>gi|281340311|gb|EFB15895.1| hypothetical protein PANDA_006866 [Ailuropoda melanoleuca]
Length = 1375
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 79/141 (56%), Gaps = 4/141 (2%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
+ W LQ L ++++L+ A + G Q L GK G R N+ GKRV+F+G
Sbjct: 291 IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 350
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
R+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V NGP V+PGAN IQ
Sbjct: 351 RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQQRH 410
Query: 594 GSVVRISSSQAVQRESLAKRL 614
+ R + RE +A+ L
Sbjct: 411 TQMKRF--LKYGNREKMAQEL 429
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V NGP V+PGAN IQ
Sbjct: 348 FSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQ 407
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ R + RE +A+ L
Sbjct: 408 QRHTQMKRF--LKYGNREKMAQEL 429
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+E++Q + ++V S ++ + P G+ D MG SE+ PC TCG N C GH G
Sbjct: 11 EEMRQQAHIQVVSKNLYSQDNNHAPLLYGVLDHRMG-TSEKDRPCETCGKNLADCLGHYG 69
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
+I+L +P + +FR V +L++ C C I + + F++ +K
Sbjct: 70 YIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSHEEKKQFLDYLK 115
>gi|3063677|gb|AAC14137.1| RNA polymerase II largest subunit [Dictyostelium discoideum]
Length = 757
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 63/87 (72%)
Query: 509 LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWN 568
++Q L GK G IR N+MGKRV+F+ R+VIT DP L+ID +GVP A LTYP VTP+N
Sbjct: 256 IRQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLSIDQVGVPRSIALNLTYPETVTPFN 315
Query: 569 VTLLRKMVINGPNVYPGANMIQNEDGS 595
+ +R+++ NGP+ +PGA I EDG+
Sbjct: 316 IDKMRELIRNGPSEHPGAKYIIREDGT 342
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 45/65 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L+ID +GVP A LTYP VTP+N+ +R+++ NGP+ +PGA I
Sbjct: 278 FSARTVITADPNLSIDQVGVPRSIALNLTYPETVTPFNIDKMRELIRNGPSEHPGAKYII 337
Query: 74 NEDGS 78
EDG+
Sbjct: 338 REDGT 342
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,367,890,796
Number of Sequences: 23463169
Number of extensions: 386877579
Number of successful extensions: 977594
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 9392
Number of HSP's successfully gapped in prelim test: 96
Number of HSP's that attempted gapping in prelim test: 951778
Number of HSP's gapped (non-prelim): 24225
length of query: 621
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 472
effective length of database: 8,863,183,186
effective search space: 4183422463792
effective search space used: 4183422463792
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 80 (35.4 bits)