BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16766
(621 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P91875|RPA1_DROME DNA-directed RNA polymerase I subunit RPA1 OS=Drosophila
melanogaster GN=RpI1 PE=1 SV=2
Length = 1642
Score = 316 bits (810), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 186/513 (36%), Positives = 289/513 (56%), Gaps = 32/513 (6%)
Query: 119 VVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCG 178
+ P L+ +TDQE+++LSVVKV + ITF++LGH IPGGLYD+ MG DPC TC
Sbjct: 11 MFPSDLEFAVFTDQEIRKLSVVKVITGITFDALGHAIPGGLYDIRMGSYGRCMDPCGTC- 69
Query: 179 NNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLD 238
C GH+GHIEL PV N F + VQ LL + C C+K+ + + + Q++L+D
Sbjct: 70 LKLQDCPGHMGHIELGTPVYNPFFIKFVQRLLCIFCLHCYKLQMKDHECEIIMLQLRLID 129
Query: 239 AGYVTQAKDLEETLFNEENLRLHPAQLV-----QLVDSHVQSI--LAHGTKICDINDYKG 291
AGY+ +A++LE LF E + + LV +V H+ ++ L + N K
Sbjct: 130 AGYIIEAQELE--LFKSEIVCQNTENLVAIKNGDMVHPHIAAMYKLLEKNEKNSSNSTKT 187
Query: 292 GEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKS 351
LR+A L R + +KC C + + Y R+++ F + ++ + +
Sbjct: 188 SCSLRTAITHSALQR-LGKKCRHCNKSMRFVRYMHRRLV--FYVTLADIKERVGTGAETG 244
Query: 352 SNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLD------TTKELIATDIMFI 405
+ + A E ++++ N LK L+PVL T + D+ F+
Sbjct: 245 GQNKV-------IFADECRRYLRQIYANYPELLKLLVPVLGLSNTDLTQGDRSPVDLFFM 297
Query: 406 RSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQ--SDLLSEA 463
+L V P RPL+M + + +Y +I+ + L V+ MK ++ ++ A
Sbjct: 298 DTLPVTPPRARPLNMVGDMLKGNPQTDIYINIIENNHVLNVVLKYMKGGQEKLTEEAKAA 357
Query: 464 LKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQN 523
+ ++G+T + KL +W LQ +VD+L+D ++ +G +GLKQ+++ K+G+IR +
Sbjct: 358 YQTLKGETAHEKLYTAWLALQMSVDVLLDVNMSREMKSG----EGLKQIIEKKSGLIRSH 413
Query: 524 MMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVY 583
MMGKRVN+A R+VITPDP +N+D IG+P FAK L+YPVPVT WNVT LRKMV+NGP+V+
Sbjct: 414 MMGKRVNYAARTVITPDPNINVDEIGIPDIFAKKLSYPVPVTEWNVTELRKMVMNGPDVH 473
Query: 584 PGANMIQNEDGSVVRISSSQAVQRESLAKRLIT 616
PGAN IQ+++G I + A +RESLAK L++
Sbjct: 474 PGANYIQDKNGFTTYIPADNASKRESLAKLLLS 506
Score = 113 bits (283), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 53/90 (58%), Positives = 70/90 (77%), Gaps = 1/90 (1%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ R+VITPDP +N+D IG+P FAK L+YPVPVT WNVT LRKMV+NGP+V+PGAN IQ
Sbjct: 421 YAARTVITPDPNINVDEIGIPDIFAKKLSYPVPVTEWNVTELRKMVMNGPDVHPGANYIQ 480
Query: 74 NEDGSVVRISSSQAVQRESLAKRLIT-PED 102
+++G I + A +RESLAK L++ P+D
Sbjct: 481 DKNGFTTYIPADNASKRESLAKLLLSNPKD 510
>sp|O35134|RPA1_MOUSE DNA-directed RNA polymerase I subunit RPA1 OS=Mus musculus
GN=Polr1a PE=1 SV=2
Length = 1717
Score = 270 bits (691), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 172/522 (32%), Positives = 278/522 (53%), Gaps = 42/522 (8%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P + LG+ GLYDLA+GP + + C TC ++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYVDYLGNPSANGLYDLALGPADSK-EVCATCVQDFNNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHI+LP+ V N F + LLL+ SC CH + P + L I+Q+++L+ G + +L
Sbjct: 79 GHIDLPLTVYNPFLFDKLYLLLRGSCLSCHMLTCPRAAIYLLISQLRVLEVGALQAVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSR 306
E L F EE ++ + ++ + IL + K E RS VAQ
Sbjct: 139 ERILSRFLEETGDPSAFEIQEELEEYTSKILQNNLLGSQGTHVKNVCESRSKLVAQFWKT 198
Query: 307 HVKRK-CIFCATPINAISYQQR-KIIKSF------KIDKDN--LDQSLDKSLNKSSNQII 356
H+ K C C T + + + K+I ++ K D++ L + + ++ Q+
Sbjct: 199 HMAAKQCPHCKTGRSVVRKEHNSKLIITYPATVHKKSDQEGTELPEGVPEAPGIDKAQMG 258
Query: 357 RKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTT--KELIATDIMFIRSLVVPPNN 414
++ GY+ S + +W NE FL L LD + + F+ +VVPP+
Sbjct: 259 KR---GYLTPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGPESSFNPSMFFLDFIVVPPSR 315
Query: 415 LRPLSM--EQMPPVEHSRNKLYQSILYSCGSLKSVIMAM----------------KNKEQ 456
RP++ +QM + N Q+++ ++ ++ M K +
Sbjct: 316 YRPVNRLGDQMFTNGQTVN--LQAVMKDAVLIRKLLALMAQEQKLPCEMTELTIDKENDS 373
Query: 457 SDLLSEALKGIR-GDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDG 515
S + + G+ G +L +KL N W LQ +V+++ D++++ + G++Q+L+
Sbjct: 374 SVAIDRSFLGLLPGPSLTDKLYNIWIRLQSHVNIVFDSEMD---KLMLEKYPGIRQILEK 430
Query: 516 KTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKM 575
K G+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+
Sbjct: 431 KEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQA 490
Query: 576 VINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
VINGPNV+PGA+M+ NEDGS +SS A QRE++AK+L+TP
Sbjct: 491 VINGPNVHPGASMVINEDGSRTALSSVDAAQREAVAKQLLTP 532
Score = 117 bits (293), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 67/87 (77%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 446 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 505
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +SS A QRE++AK+L+TP
Sbjct: 506 NEDGSRTALSSVDAAQREAVAKQLLTP 532
>sp|O95602|RPA1_HUMAN DNA-directed RNA polymerase I subunit RPA1 OS=Homo sapiens
GN=POLR1A PE=1 SV=2
Length = 1720
Score = 258 bits (660), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 174/524 (33%), Positives = 278/524 (53%), Gaps = 53/524 (10%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P +SLG+ GLYDLA+GP + + C+TC +++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSK-EVCSTCVQDFSNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELP+ V N L F + LLL+ SC CH + P L + Q+++L+ G + +L
Sbjct: 79 GHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSIL---------AHGTKICDINDYKGGEELRS 297
E L F EEN +++ + ++ + I+ AH +C E +S
Sbjct: 139 ERILNRFLEENPDPSASEIREELEQYTTEIVQNNLLGSQGAHVKNVC---------ESKS 189
Query: 298 AFVAQVLSRHV-KRKCIFCATPINAISYQQR-KIIKSF-KIDKDNLDQSLDKSLNKSSNQ 354
+A H+ ++C C T + + + K+ +F + Q + L Q
Sbjct: 190 KLIALFWKAHMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQ 249
Query: 355 IIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDT--TKELIATDIMFIRSLVVPP 412
I ++ GY+ + LW NE FL L +D + + F+ LVVPP
Sbjct: 250 IGKR---GYLTPTSAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPP 306
Query: 413 NNLRPLSM--EQMPPVEHSRNKLYQSILYSCGSLKSVI--MAMKNK-----------EQS 457
+ RP+S +QM + N Q+++ ++ ++ MA + K E+
Sbjct: 307 SRYRPVSRLGDQMFTNGQTVN--LQAVMKDVVLIRKLLALMAQEQKLPEEVATPTTDEEK 364
Query: 458 DLL----SEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQML 513
D L L + G +L +KL N W LQ +V+++ D++++ + G++Q+L
Sbjct: 365 DSLIAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMD---KLMMDKYPGIRQIL 421
Query: 514 DGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLR 573
+ K G+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR
Sbjct: 422 EKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELR 481
Query: 574 KMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
+ VINGPNV+PGA+M+ NEDGS +S+ QRE++AK+L+TP
Sbjct: 482 QAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTP 525
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 66/87 (75%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 439 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 498
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +S+ QRE++AK+L+TP
Sbjct: 499 NEDGSRTALSAVDMTQREAVAKQLLTP 525
>sp|O54889|RPA1_RAT DNA-directed RNA polymerase I subunit RPA1 OS=Rattus norvegicus
GN=Polr1a PE=1 SV=1
Length = 1716
Score = 256 bits (654), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 172/532 (32%), Positives = 274/532 (51%), Gaps = 62/532 (11%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P +SLG+ GLYDLA+GP + + C+TC ++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYVDSLGNPSADGLYDLALGPADSK-EVCSTCVQDFNNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHI+LP+ V N L F + LLL+ SC CH + P + L + Q+K+LD G + +L
Sbjct: 79 GHIDLPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAAIHLLVCQLKVLDVGALQAVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSIL---------AHGTKICDINDYKGGEELRS 297
E L F EE ++ + ++ + IL AH +C E RS
Sbjct: 139 ERILSRFLEETSDPSAFEIQEELEEYTSKILQNNLLGSQGAHVKNVC---------ESRS 189
Query: 298 AFVAQVLSRHVK-RKCIFCATPINAISYQQRKII----------KSFKIDKDNLDQSLDK 346
VA H+ ++C C T + + + + KS + D + L +
Sbjct: 190 KLVAHFWKTHMAAKRCPHCKTGRSVVRKEHNSKLTITYPAMVHKKSGQKDAE-LPEGAPA 248
Query: 347 SLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTT--KELIATDIMF 404
+ Q+ ++ GY+ S + +W NE FL L LD + + F
Sbjct: 249 APGIDEAQMGKR---GYLTPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGPESSFNPSMFF 305
Query: 405 IRSLVVPPNNLRPLSM--EQMPPVEHSRNKLYQSILYSCGSLKSVIMAM----------- 451
+ +VVPP+ RP++ +QM + N Q+++ ++ ++ M
Sbjct: 306 LDFIVVPPSRYRPINRLGDQMFTNGQTVN--LQAVMKDAVLIRKLLAVMAQEQKLPCEMT 363
Query: 452 ------KNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQ 505
+N + L + G +L +KL N W LQ +V+++ D+ ++ +
Sbjct: 364 EITIDKENDSSGAIDRSFLSLLPGQSLTDKLYNIWIRLQSHVNIVFDSDMD---KLMLEK 420
Query: 506 IDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVT 565
G++Q+L+ K G+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVT
Sbjct: 421 YPGIRQILEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVT 480
Query: 566 PWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
PWNV LR+ VINGPNV+PGA+M+ NEDGS +S+ A QRE++AK+L+TP
Sbjct: 481 PWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDATQREAVAKQLLTP 532
Score = 116 bits (290), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 67/87 (77%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+
Sbjct: 446 YAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 505
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITP 100
NEDGS +S+ A QRE++AK+L+TP
Sbjct: 506 NEDGSRTALSAVDATQREAVAKQLLTP 532
>sp|P10964|RPA1_YEAST DNA-directed RNA polymerase I subunit RPA190 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPA190 PE=1
SV=2
Length = 1664
Score = 241 bits (616), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 173/564 (30%), Positives = 276/564 (48%), Gaps = 89/564 (15%)
Query: 130 TDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
T +E++ LS ++ +P ++LGH + GGLYDLA+G + C+TCG + C GH G
Sbjct: 20 TAKEIRNLSAKQITNPTVLDNLGHPVSGGLYDLALGAFLR--NLCSTCGLDEKFCPGHQG 77
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYV------- 242
HIELPVP N LFF + + L+ SC CH + + + +++LL G +
Sbjct: 78 HIELPVPCYNPLFFNQLYIYLRASCLFCHHFRLKSVEVHRYACKLRLLQYGLIDESYKLD 137
Query: 243 ------------------------------TQAKDLEETLFNEENLRLHPAQLVQLVDSH 272
Q+KD+ TL NE L+ ++ V + +
Sbjct: 138 EITLGSLNSSMYTDDEAIEDNEDEMDGEGSKQSKDISSTLLNE--LKSKRSEYVDMAIAK 195
Query: 273 VQS---ILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCA-----------TP 318
S G+ +ND + ++L F ++LSR KC C T
Sbjct: 196 ALSDGRTTERGSFTATVNDER--KKLVHEFHKKLLSRG---KCDNCGMFSPKFRKDGFTK 250
Query: 319 INAISYQQRKI----IKSF-------------KIDKDNLDQSLDK-SLNKSSNQIIR-KR 359
I + +++I +K F K+D N + D+ S + N R K
Sbjct: 251 IFETALNEKQITNNRVKGFIRQDMIKKQKQAKKLDGSNEASANDEESFDVGRNPTTRPKT 310
Query: 360 EQGYVMASEVEADFKKLWTNEHLFLKCLI---PVLDTTKELIATDIMFIRSLVVPPNNLR 416
Y++++EV+ ++ E L+ + P L +++L+ D F+ LVVPP R
Sbjct: 311 GSTYILSTEVKNILDTVFRKEQCVLQYVFHSRPNL--SRKLVKADSFFMDVLVVPPTRFR 368
Query: 417 PLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKL 476
S E+S+N+L +L + S+++ N + S L + + + ++L
Sbjct: 369 LPSKLGEEVHENSQNQLLSKVLTT-----SLLIRDLNDDLSKLQKDKVSLEDRRVIFSRL 423
Query: 477 QNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSV 536
N++ +Q +V+ +D+ +T+G I G+KQ L+ K G+ R++MMGKRVN+A RSV
Sbjct: 424 MNAFVTIQNDVNAFIDSTKAQGRTSGKVPIPGVKQALEKKEGLFRKHMMGKRVNYAARSV 483
Query: 537 ITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSV 596
I+PDP + + IGVP FA LTYP PVT +N+ LR+ VINGP+ +PGA IQNEDGS+
Sbjct: 484 ISPDPNIETNEIGVPPVFAVKLTYPEPVTAYNIAELRQAVINGPDKWPGATQIQNEDGSL 543
Query: 597 VRISSSQAVQRESLAKRLITPEGN 620
V + QR++LA +L+TP N
Sbjct: 544 VSLIGMSVEQRKALANQLLTPSSN 567
Score = 99.0 bits (245), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 65/100 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP + + IGVP FA LTYP PVT +N+ LR+ VINGP+ +PGA IQ
Sbjct: 478 YAARSVISPDPNIETNEIGVPPVFAVKLTYPEPVTAYNIAELRQAVINGPDKWPGATQIQ 537
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI 113
NEDGS+V + QR++LA +L+TP + +K+
Sbjct: 538 NEDGSLVSLIGMSVEQRKALANQLLTPSSNVSTHTLNKKV 577
>sp|P15398|RPA1_SCHPO DNA-directed RNA polymerase I subunit rpa1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpa1 PE=1 SV=2
Length = 1689
Score = 210 bits (535), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 167/586 (28%), Positives = 287/586 (48%), Gaps = 97/586 (16%)
Query: 117 QEVVPEILKLKY--YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPC 174
Q V EI +K+ Y +V+++SV ++ +P+ ++L H GGLYDLA+GP + C
Sbjct: 5 QPVSSEIKSVKFGIYDVDDVEKISVKQIVNPVLLDNLNHPTNGGLYDLALGPYL-KNSVC 63
Query: 175 TTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLF---- 230
TC + C GH GHI LP+P + LFF + LL+ +C CH + LF
Sbjct: 64 ATCHLDERYCPGHFGHIVLPIPAYHPLFFSQMYNLLRSTCLYCHHFKLSKVKVHLFFCRL 123
Query: 231 -------INQIKLLDAGYVTQA-------------KDLEETLFNEENLRLHPAQLVQLVD 270
+N+ ++++ +T+A D E++ +++ A L+++ D
Sbjct: 124 KLLDYGLLNESEMVENVSLTEAIIKNSNGTPLEDGSDSEDSGLGHDDIAKDAATLMRIRD 183
Query: 271 SHVQSILAHGTKICDIND------YKGGEELRSAFVAQVLSRHVKRKCIFCAT------- 317
V +A + I+ +++ AF + SR ++C C +
Sbjct: 184 EFVAKSIADSRQNAHIDAQLTTLLLHERKKVVRAFYHAISSR---KQCDNCQSFSPNFRK 240
Query: 318 ---------PINAISYQ---QRKIIKS---------------FKIDKDNLDQSLDKSL-- 348
P++ + Q Q I+S + D D+ ++S + +
Sbjct: 241 EGFAKIFEIPLSGKNLQFMEQTGKIRSDVLRDTSKKHHEDEGYDGDSDSSNESEVEGIDL 300
Query: 349 ---------NKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIA 399
NKS + I + Y+ ++EV ++L+ E++ L L + +
Sbjct: 301 FEEDPNPLKNKSKSPIAHGAK--YMTSTEVRNHLRRLFVKENVVLSRLYA--HKRGKPAS 356
Query: 400 TDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQS-D 458
D+ F++++ VPP RP S E+ +N+L IL S S+ +A +K+ + +
Sbjct: 357 ADMFFLQNIAVPPTRFRPASKMGDEVHENIQNELLTRILQS-----SIQIASLSKDSTVE 411
Query: 459 LLSEALKGI-RGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQID---GLKQMLD 514
+ + +G+ R L N++ +LQ++V+ L+D+ N N ++G G+KQ+L+
Sbjct: 412 VNPDEKEGLERRSRAFELLINAFVQLQHDVNSLIDS--NRNPSSGGQSRTVPPGIKQILE 469
Query: 515 GKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRK 574
K G+ R++MMGKRVN+A RSVI+PDP + + IGVP FA LTYP PVT +N +R
Sbjct: 470 KKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTLYNFNEMRN 529
Query: 575 MVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPEGN 620
VINGP+ +PGA+ IQNEDG+++ + QR +LA +L+TP+ N
Sbjct: 530 AVINGPHKWPGASHIQNEDGTLISLMPLTIEQRTALANQLLTPQSN 575
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 60/88 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP + + IGVP FA LTYP PVT +N +R VINGP+ +PGA+ IQ
Sbjct: 486 YAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTLYNFNEMRNAVINGPHKWPGASHIQ 545
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPE 101
NEDG+++ + QR +LA +L+TP+
Sbjct: 546 NEDGTLISLMPLTIEQRTALANQLLTPQ 573
>sp|Q86H36|RPA1_DICDI DNA-directed RNA polymerase I subunit rpa1 OS=Dictyostelium
discoideum GN=polr1a PE=3 SV=1
Length = 1615
Score = 206 bits (525), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 169/556 (30%), Positives = 263/556 (47%), Gaps = 77/556 (13%)
Query: 109 MKEKIITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPIS 168
M + + ++E+ + ++YT +V++LSV ++ +F+ LG +PGGL+D A+GP
Sbjct: 3 MSQSALIKEEISS--VSFQFYTSDDVRKLSVKQIVEIESFDMLGGPVPGGLHDPALGPTG 60
Query: 169 ERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCH--KINIPATS 226
+ C TC ++ +C GH GHIEL +P N + F+ + LLK CF CH K P +
Sbjct: 61 P-AERCATCSLDFIECPGHFGHIELAIPCYNPVSFQTIFKLLKNKCFHCHHFKHGKPIIN 119
Query: 227 QLLFINQIKLLDAGYVTQAKDLEETLF-------------NEENLRLHPAQLVQLVDSHV 273
Q FI ++ LL G V +A++L E NEE + +
Sbjct: 120 Q--FIEELTLLFKGDVVKARNLRERNVLLRGYEEKKKGKSNEEGEEVMESDESDSDKMDT 177
Query: 274 QSILAHGTKICD--IND---YKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRK 328
+G ICD N Y G F +V + N +Y R
Sbjct: 178 DENKTNGKIICDGVFNAKEIYSGKATHIEDFKREVFKEFFGSFSGYAIPCGNCGAYSPR- 236
Query: 329 IIKSFKIDKDNL------DQSLDKS----LNKSSNQIIRKREQGYVMAS-EVEADFKKLW 377
+++ K L D+ K+ L + + + + E G A EV + KKL+
Sbjct: 237 -LRNGDASKSKLFIMPLHDKYATKNSAIKLPTNFSSVKEQTEHGTWFAPWEVLDNMKKLF 295
Query: 378 TNEH----LFLKCLIPVLDT------------TKELIATDIMFIRSLVVPPNNLRPLSME 421
NE + L L+P++ TKE D +F+R V P RP +
Sbjct: 296 ENEKEILDMLLGHLVPIVTNKGGAKKNVGRQFTKE-SNVDSLFMRVFPVTPARYRPPNFV 354
Query: 422 QMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWH 481
EH +N Y+ ++ S ++ I A + K + L NS
Sbjct: 355 NGRRSEHPQNSHYKGMVKSNKMIRQSIDAGEGKAKF------------------LVNSVC 396
Query: 482 ELQYNVDLLMD-AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPD 540
+LQ +V+ + D +K N N A +G+KQ+L+ K G+ R++MMGKRVN+A R+VI+PD
Sbjct: 397 DLQMHVNNMYDNSKSNSNTNEVA---NGIKQILEKKEGLFRKHMMGKRVNYAARTVISPD 453
Query: 541 PYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRIS 600
L + +GVP FAKTLT+P PVT +N L + VINGP YPGAN I++E+G ++ +S
Sbjct: 454 ISLETNEMGVPQYFAKTLTFPQPVTSFNYNQLAQAVINGPEQYPGANFIEDENGHLINLS 513
Query: 601 SSQAVQRESLAKRLIT 616
+R +L+K L+T
Sbjct: 514 KESQEKRIALSKTLLT 529
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 62/98 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ R+VI+PD L + +GVP FAKTLT+P PVT +N L + VINGP YPGAN I+
Sbjct: 444 YAARTVISPDISLETNEMGVPQYFAKTLTFPQPVTSFNYNQLAQAVINGPEQYPGANFIE 503
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKE 111
+E+G ++ +S +R +L+K L+T R + K+
Sbjct: 504 DENGHLINLSKESQEKRIALSKTLLTSHPHAPRGVNKK 541
>sp|P31813|RPOA1_THECE DNA-directed RNA polymerase subunit A' OS=Thermococcus celer
GN=rpoA1 PE=3 SV=1
Length = 905
Score = 149 bits (377), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 129/492 (26%), Positives = 220/492 (44%), Gaps = 113/492 (22%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHI 191
QE++++S ++ P T++ G+ I GGL D +G I G C TCG +C GH GH+
Sbjct: 19 QEIRKMSAAEITVPDTYDEDGYPIEGGLMDKRLGVIDP-GLRCETCGARAGECPGHFGHV 77
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEET 251
EL PVI+ F + + +L+ +C C +IKL D +++EE
Sbjct: 78 ELARPVIHVGFAKTIHRVLESTCREC--------------GRIKLTD-------EEIEEY 116
Query: 252 LFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRK 311
H ++ N K + L + R V
Sbjct: 117 F--------------------------HKFEVTG-NRKKAKDRLIKEIHKKAKERMV--- 146
Query: 312 CIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVEA 371
C C +P I +++ + + D++ N+ +++ M SEV
Sbjct: 147 CPHCGSPQFPIKFERPTVYWELRKDEEG---------NEYKHRM---------MPSEVRD 188
Query: 372 DFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRP-LSMEQMPPVEHSR 430
+K+ + +P++ E + M + L VPP +RP +++E E
Sbjct: 189 RLEKIPDRD-------LPLIGLDAEKARPEWMVLTVLPVPPVTMRPSITLESGIRAE--- 238
Query: 431 NKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLL 490
+ L ++ I+ + N+ +S++ + A + I +++ W LQY+V
Sbjct: 239 DDLTHKLVD--------IIRINNRLKSNIEAGAPQLI--------IEDLWDLLQYHVTTY 282
Query: 491 MDAKLNINKTTG--------AHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPY 542
++ N+T+G + L Q L GK G R N+ GKRVNF+ R+VI+PDP
Sbjct: 283 IN-----NETSGIPPAKHKSGRPLKTLSQRLKGKEGRFRGNLSGKRVNFSARTVISPDPM 337
Query: 543 LNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSS 602
++I+ +GVP+ A LT P VT +N LRKMV+NGP YPGAN + + +G +R+ +
Sbjct: 338 ISINEVGVPMAIAMELTVPEKVTEFNFEKLRKMVLNGPEKYPGANYVIDPEGRRIRLMEN 397
Query: 603 QAVQRESLAKRL 614
E++A++L
Sbjct: 398 NL---ETVAEKL 406
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 55/84 (65%), Gaps = 3/84 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP ++I+ +GVP+ A LT P VT +N LRKMV+NGP YPGAN +
Sbjct: 326 FSARTVISPDPMISINEVGVPMAIAMELTVPEKVTEFNFEKLRKMVLNGPEKYPGANYVI 385
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ +G +R+ + E++A++L
Sbjct: 386 DPEGRRIRLMENNL---ETVAEKL 406
>sp|P25202|RPC1_GIAIN DNA-directed RNA polymerase III subunit RPC1 OS=Giardia
intestinalis GN=RPOA3 PE=3 SV=1
Length = 1741
Score = 139 bits (350), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 120/489 (24%), Positives = 214/489 (43%), Gaps = 55/489 (11%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNY 181
E L + + +LS V++ +PI + G+ D +G +S++ C TCG +
Sbjct: 28 EKLVFSVLSSNALMKLSEVQITTPILYEHYPSPATNGVLDKRLG-LSDKVGKCATCGKDT 86
Query: 182 TKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGY 241
C GH G I L +PV + D + +L + C C ++ I +L +
Sbjct: 87 KMCIGHFGTISLALPVFHPGLINDARTMLSIVCPFCSRVKISEADRLKYKVLNHKFSLAI 146
Query: 242 VTQAKDLEETLFN-------------EENLR-LHPAQLVQLVDSHVQSILAHGTKICDIN 287
V +A++ + N + R L + + ++ H I I
Sbjct: 147 VKEAQEQAKKQVNCPFCHAPSTICKKSQGFRVLREMHYEERATKILADVIKHQKDIEKIQ 206
Query: 288 DYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKS 347
+ + LR+ V + + H+ +K C P I +Q R + S + +
Sbjct: 207 ELD--QRLRNHVVDPIQALHILQKVPECDYPYLGIPWQSRNVYASQQTPDSIASNDASQL 264
Query: 348 LNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRS 407
++ S++++ + ++ + +D T+ H FL +++I T I
Sbjct: 265 FSRGSSKLLARTASRFIAQHQGISDRATRLTS-HAFLT-------RPQDVILTHI----- 311
Query: 408 LVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGI 467
VPP+ LRP S++ + + L ++ I+ + +K L EA+ +
Sbjct: 312 -PVPPSCLRP-SVQSGSGAGTTEDNLTSHLVR--------ILTINDK-----LKEAM--V 354
Query: 468 RGDTLNNKLQNSWHELQYNVDLLMDAKLN------INKT-TGAHQIDGLKQMLDGKTGMI 520
G +K+ W +L +V LL K+ NKT +G + G+ L GK G
Sbjct: 355 SGAVATSKVYAKWDQLNMDVSLLYIGKIPGGVQPVKNKTDSGTKEGTGIIDRLKGKAGRF 414
Query: 521 RQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGP 580
R N+ GKRVNF+GR+VI+P+PYL++ + +P A+ LT+P VT N+ LR++++NG
Sbjct: 415 RSNLSGKRVNFSGRTVISPNPYLSMQQVAIPRLIAQNLTFPEIVTSRNIRFLRELILNG- 473
Query: 581 NVYPGANMI 589
YPGAN +
Sbjct: 474 KTYPGANEV 482
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 72
F R+VI+P+PYL++ + +P A+ LT+P VT N+ LR++++NG YPGAN +
Sbjct: 425 FSGRTVISPNPYLSMQQVAIPRLIAQNLTFPEIVTSRNIRFLRELILNG-KTYPGANEV 482
>sp|P08775|RPB1_MOUSE DNA-directed RNA polymerase II subunit RPB1 OS=Mus musculus
GN=Polr2a PE=1 SV=3
Length = 1970
Score = 129 bits (324), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 134/481 (27%), Positives = 214/481 (44%), Gaps = 95/481 (19%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E+K++SV + + P T G GGL D G I ER C TC N T+C GH GH
Sbjct: 30 ELKRMSVTEGGIKYPETTEG-GRPKLGGLMDPRQGVI-ERTGRCQTCAGNMTECPGHFGH 87
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
IEL PV + F +L+ CF C K+ L+ N K+ KD+
Sbjct: 88 IELAKPVFHVGFLVKTMKVLRCVCFFCSKL-------LVDSNNPKI---------KDILA 131
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQV------L 304
+ RL +HV L G IC+ GGEE+ + F + L
Sbjct: 132 KSKGQPKKRL----------THVYD-LCKGKNICE-----GGEEMDNKFGVEQPEGDEDL 175
Query: 305 SRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGY 363
++ ++ C YQ R I + L+ + K +N+ S +E+
Sbjct: 176 TK--EKGHGGCG------RYQPR-------IRRSGLELYAEWKHVNEDS------QEKKI 214
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQM 423
+++ E + K ++E F VL + M + L VPP ++RP + Q
Sbjct: 215 LLSPERVHEIFKRISDEECF------VLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQ- 267
Query: 424 PPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHEL 483
+RN+ + + + + ++ EQ+ + + + KL L
Sbjct: 268 ---GSARNQ--DDLTHKLADIVKINNQLRRNEQNGAAAHVI------AEDVKL------L 310
Query: 484 QYNVDLLMDAKL-----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
Q++V ++D +L + K+ + LKQ L GK G +R N+MGKRV+F+ R+VIT
Sbjct: 311 QFHVATMVDNELPGLPRAMQKS--GRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVR 598
PDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I ++G +
Sbjct: 369 PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRID 428
Query: 599 I 599
+
Sbjct: 429 L 429
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I
Sbjct: 361 FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII 420
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 421 RDNGDRIDL 429
>sp|P24928|RPB1_HUMAN DNA-directed RNA polymerase II subunit RPB1 OS=Homo sapiens
GN=POLR2A PE=1 SV=2
Length = 1970
Score = 129 bits (324), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 134/481 (27%), Positives = 214/481 (44%), Gaps = 95/481 (19%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E+K++SV + + P T G GGL D G I ER C TC N T+C GH GH
Sbjct: 30 ELKRMSVTEGGIKYPETTEG-GRPKLGGLMDPRQGVI-ERTGRCQTCAGNMTECPGHFGH 87
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEE 250
IEL PV + F +L+ CF C K+ L+ N K+ KD+
Sbjct: 88 IELAKPVFHVGFLVKTMKVLRCVCFFCSKL-------LVDSNNPKI---------KDILA 131
Query: 251 TLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQV------L 304
+ RL +HV L G IC+ GGEE+ + F + L
Sbjct: 132 KSKGQPKKRL----------THVYD-LCKGKNICE-----GGEEMDNKFGVEQPEGDEDL 175
Query: 305 SRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLD-KSLNKSSNQIIRKREQGY 363
++ ++ C YQ R I + L+ + K +N+ S +E+
Sbjct: 176 TK--EKGHGGCG------RYQPR-------IRRSGLELYAEWKHVNEDS------QEKKI 214
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQM 423
+++ E + K ++E F VL + M + L VPP ++RP + Q
Sbjct: 215 LLSPERVHEIFKRISDEECF------VLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQ- 267
Query: 424 PPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHEL 483
+RN+ + + + + ++ EQ+ + + + KL L
Sbjct: 268 ---GSARNQ--DDLTHKLADIVKINNQLRRNEQNGAAAHVI------AEDVKL------L 310
Query: 484 QYNVDLLMDAKL-----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
Q++V ++D +L + K+ + LKQ L GK G +R N+MGKRV+F+ R+VIT
Sbjct: 311 QFHVATMVDNELPGLPRAMQKS--GRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVR 598
PDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I ++G +
Sbjct: 369 PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRID 428
Query: 599 I 599
+
Sbjct: 429 L 429
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I
Sbjct: 361 FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII 420
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 421 RDNGDRIDL 429
>sp|P04052|RPB1_DROME DNA-directed RNA polymerase II subunit RPB1 OS=Drosophila
melanogaster GN=RpII215 PE=3 SV=4
Length = 1887
Score = 127 bits (319), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 130/457 (28%), Positives = 191/457 (41%), Gaps = 100/457 (21%)
Query: 157 GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFL 216
GGL D G I +R C TC N T+C GH GHI+L PV + F +L+ CF
Sbjct: 51 GGLMDPRQGVI-DRTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFY 109
Query: 217 CHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSI 276
C K+ + + I +I + G + +L + D
Sbjct: 110 CSKMLVSPHNPK--IKEIVMKSRGQPRK-------------------RLAYVYD------ 142
Query: 277 LAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKID 336
L G IC+ GGE++ Q + K C YQ I
Sbjct: 143 LCKGKTICE-----GGEDMDLTKENQQPDPNKKPGHGGCG------HYQP-------SIR 184
Query: 337 KDNLDQSLD-KSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTK 395
+ LD + + K N+ S +E+ V+++E + K T+E F+ + P
Sbjct: 185 RTGLDLTAEWKHQNEDS------QEKKIVVSAERVWEILKHITDEECFILGMDP------ 232
Query: 396 ELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKE 455
+ D M + L VPP +RP +V+M K
Sbjct: 233 KYARPDWMIVTVLPVPPLAVRP----------------------------AVVMFGAAKN 264
Query: 456 QSDL---LSEALKGIRGDTLNNKLQNSWHELQYNVDLLMD--AKLNINKTTG---AHQID 507
Q DL LS+ +K N + H +Q N+ +L A L N G A Q
Sbjct: 265 QDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKS 324
Query: 508 G-----LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPV 562
G +K L GK G IR N+MGKRV+F+ R+VITPDP L ID +GVP A+ LT+P
Sbjct: 325 GKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPE 384
Query: 563 PVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
VTP+N+ ++++V G + YPGA I ++G + +
Sbjct: 385 LVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDL 421
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ LT+P VTP+N+ ++++V G + YPGA I
Sbjct: 353 FSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIV 412
Query: 74 NEDGSVVRI 82
++G + +
Sbjct: 413 RDNGERIDL 421
>sp|P28363|RPA1_EUPOC DNA-directed RNA polymerase I subunit RPA1 (Fragment) OS=Euplotes
octocarinatus GN=RPA1 PE=3 SV=1
Length = 638
Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/251 (31%), Positives = 131/251 (52%), Gaps = 26/251 (10%)
Query: 357 RKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLR 416
++++Q Y+ EV ++LW E L L D K I F+ +L+V N R
Sbjct: 318 QEKKQKYLSPIEVLEHMRRLWDVEDTLLNEL---FDNYK------IFFMNNLLVSQNRFR 368
Query: 417 PLSMEQMPPVE-----HSRNKLYQSILYSCGSLKSVIMAMKN-KEQSDLLSEALKG---- 466
P S + H+ + + I+ + + + I +N + +L +E+ K
Sbjct: 369 PESSGGKQSGDDRDYLHAHSAMLTKIINANIAFRRTIELKENLTDDRNLETESEKSKTQQ 428
Query: 467 ---IRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQN 523
+ + + ++ +W ELQ +V+ +D+ L + GL+Q+L+ K G+ R
Sbjct: 429 IDLSKTEITSKQVIKAWAELQESVNCYLDSSLAAKLEN--KEKPGLRQLLERKEGIFRMK 486
Query: 524 MMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVY 583
MMGKRVNFAGRSVI+PDPY++ D IGVP A+T+T+P P N+ L++ VING + +
Sbjct: 487 MMGKRVNFAGRSVISPDPYISTDQIGVPEFIARTITFPEPAK--NIEKLKRCVINGAHKH 544
Query: 584 PGANMIQNEDG 594
PGAN I+ +G
Sbjct: 545 PGANFIEYPNG 555
Score = 85.9 bits (211), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 72/127 (56%), Gaps = 1/127 (0%)
Query: 125 KLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPIS-ERGDPCTTCGNNYTK 183
+ +Y D+E++Q+SV ++ +P+ ++ L + G+ D +MG + ++ C TCG +
Sbjct: 17 RFSFYNDEEIQQMSVKEIHNPMAYDELNNPTSHGICDESMGVSALDKLSKCKTCGCDSVY 76
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVT 243
C GH+GHI+L N + + LLK C +CH++ I LF ++KL+ GY+
Sbjct: 77 CPGHMGHIKLTSTCYNPFTMKLLHSLLKSKCLVCHRLRISPKRIELFEIRLKLIKLGYLV 136
Query: 244 QAKDLEE 250
+A+ L +
Sbjct: 137 EAEKLSD 143
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVI+PDPY++ D IGVP A+T+T+P P N+ L++ VING + +PGAN I+
Sbjct: 494 FAGRSVISPDPYISTDQIGVPEFIARTITFPEPAK--NIEKLKRCVINGAHKHPGANFIE 551
Query: 74 NEDG 77
+G
Sbjct: 552 YPNG 555
>sp|O94666|RPC1_SCHPO DNA-directed RNA polymerase III subunit rpc1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpc1 PE=2 SV=1
Length = 1405
Score = 115 bits (289), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 114/448 (25%), Positives = 193/448 (43%), Gaps = 79/448 (17%)
Query: 158 GLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLC 217
G DL MG S + C TCG + C GH G+++L +PV + +F+ +L+ C C
Sbjct: 51 GALDLHMG-TSNKQINCATCGESMADCMGHFGYVKLALPVFHIGYFKATLTILQNICKDC 109
Query: 218 HKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSIL 277
+ + + F+ KDL +NLR +Q+ + ++ H +
Sbjct: 110 SSVLLSDQEKRQFL--------------KDLRRPGI--DNLRR--SQICKRINDHCK--- 148
Query: 278 AHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDK 337
++R + VK+ A P+ I + R + KS + D+
Sbjct: 149 ----------------KMRRCSKCDAMQGVVKK-----AGPLKIIHERFRYVRKS-QDDE 186
Query: 338 DNLDQSLDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPV----LDT 393
+N S D++L + + + S+ D L +LF K + PV L
Sbjct: 187 ENFRHSFDEAL--------KTIPELKMHLSKAHDDLNPLKV-LNLF-KQITPVDCELLGM 236
Query: 394 TKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKN 453
E + + R + PP +RP ++ E I+++
Sbjct: 237 DPEHGRPENLLWRYVPAPPVCIRPSVAQEGATTEDDLTVKITEIIWT------------- 283
Query: 454 KEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTG--AHQIDGLKQ 511
S L+ AL +G ++N L W +Q ++ + +++++ + + + I G Q
Sbjct: 284 ---SSLIRAALS--KGTPISN-LMEQWEFMQLSIAMYINSEMPGLRPSDMPSKPIRGFCQ 337
Query: 512 MLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTL 571
L GK G R N+ GKRV+F+GR+VI+PDP L ID + VP AK LT+P VT N
Sbjct: 338 RLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDQVAVPYRIAKILTFPERVTTQNKKH 397
Query: 572 LRKMVINGPNVYPGANMIQNEDGSVVRI 599
L+ + NGP+V+PGAN + + + R
Sbjct: 398 LQDCIRNGPDVHPGANYVIDRESGFKRF 425
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 41/69 (59%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP AK LT+P VT N L+ + NGP+V+PGAN +
Sbjct: 357 FSGRTVISPDPNLRIDQVAVPYRIAKILTFPERVTTQNKKHLQDCIRNGPDVHPGANYVI 416
Query: 74 NEDGSVVRI 82
+ + R
Sbjct: 417 DRESGFKRF 425
>sp|Q980R2|RPOA1_SULSO DNA-directed RNA polymerase subunit A' OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rpoA1
PE=1 SV=1
Length = 880
Score = 112 bits (281), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 83/142 (58%), Gaps = 5/142 (3%)
Query: 476 LQNSWHELQYNVDLLMDAK---LNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFA 532
+++ W LQY+V D + L +K + L Q L GK G R N+ GKRV+F+
Sbjct: 262 IEDLWDLLQYHVATYFDNEIPGLPPSKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFS 321
Query: 533 GRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
R+VI+PDP ++ID +GVP AKTLT P +TPWN+ LR+ VINGP+ +PGAN +
Sbjct: 322 SRTVISPDPNISIDEVGVPEIIAKTLTVPERITPWNIEKLRQFVINGPDKWPGANYVIRP 381
Query: 593 DGSVVRISSSQAVQRESLAKRL 614
DG RI R+ LA L
Sbjct: 382 DGR--RIDLRYVKDRKELASTL 401
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP ++ID +GVP AKTLT P +TPWN+ LR+ VINGP+ +PGAN +
Sbjct: 320 FSSRTVISPDPNISIDEVGVPEIIAKTLTVPERITPWNIEKLRQFVINGPDKWPGANYVI 379
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
DG RI R+ LA L
Sbjct: 380 RPDGR--RIDLRYVKDRKELASTL 401
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
+K + E++++SV + +P ++ G I G + D +G I E G C TCGN
Sbjct: 9 IKFGILSPDEIRKMSVTAIITPDVYDEDGTPIEGSVMDPRLGVI-EPGQKCPTCGNTLGN 67
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINI 222
C GH GHIEL PVI+ + + LK +C C ++ I
Sbjct: 68 CPGHFGHIELVRPVIHVGLVKHIYEFLKATCRRCGRVKI 106
>sp|P28364|RPB1_EUPOC DNA-directed RNA polymerase II subunit RPB1 (Fragment) OS=Euplotes
octocarinatus GN=RPB1 PE=3 SV=1
Length = 478
Score = 109 bits (273), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 98/173 (56%), Gaps = 12/173 (6%)
Query: 446 SVIMAMKNKEQSDLLSEALKGIRGD--------TLNNKLQNSWHELQYNVDLLMD----A 493
SV M +++ DL + + ++ + T N+ + ++ LQ+ L+D
Sbjct: 244 SVCMGSNIRQEDDLTHQYQQILKANNQLRKHLSTANHIINENYQLLQFYCATLIDNEQAG 303
Query: 494 KLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLE 553
++ +G I ++ L GK G +R N+MGKRV+F+ R+VIT DP L++D +GVP
Sbjct: 304 QMVSRHKSGGKAIKAIRARLKGKEGRLRGNLMGKRVDFSARTVITCDPTLDLDQLGVPRS 363
Query: 554 FAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQ 606
A+ +T P VTP N+ +RK+VINGPN +PGA I+ E G ++ +S ++ +
Sbjct: 364 IAENITIPEVVTPQNIDEMRKLVINGPNKWPGAKYIKGEGGKMIDLSYAKTTE 416
Score = 77.0 bits (188), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 51/76 (67%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+ +T P VTP N+ +RK+VINGPN +PGA I+
Sbjct: 341 FSARTVITCDPTLDLDQLGVPRSIAENITIPEVVTPQNIDEMRKLVINGPNKWPGAKYIK 400
Query: 74 NEDGSVVRISSSQAVQ 89
E G ++ +S ++ +
Sbjct: 401 GEGGKMIDLSYAKTTE 416
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 55/91 (60%), Gaps = 2/91 (2%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHI 191
+E++ +SVV+V + +++ G GG+ DL MG + E+ C+TC + +C GH GHI
Sbjct: 28 KEIQAMSVVQVENEKIYDN-GIPTDGGINDLRMGTM-EKAMRCSTCQGDSKECPGHFGHI 85
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKINI 222
EL PV + F V+ +LK CF C+K+ I
Sbjct: 86 ELAQPVFHIGFIDLVKKILKCVCFNCNKLLI 116
>sp|O55766|RPB1_IIV6 Probable DNA-directed RNA polymerase II subunit RPB1 homolog
OS=Invertebrate iridescent virus 6 GN=IIV6-176R PE=3
SV=1
Length = 1026
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 127/533 (23%), Positives = 220/533 (41%), Gaps = 138/533 (25%)
Query: 122 EILKLKYYTDQEVKQLSVVKV-FSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNN 180
E + + ++++Q+S +V + I+ +L T+ +D GPI PC TC N
Sbjct: 15 ESISFGMMSSEDIRQMSSFEVKTAKISSTNLLETV----HDPKSGPIGSA--PCETCHQN 68
Query: 181 YTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAG 240
C GH GHIEL VP+I+ LF V +LK+ C+ C+
Sbjct: 69 EWDCPGHFGHIELNVPIIHPLFINHVVNILKIFCWKCN---------------------- 106
Query: 241 YVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFV 300
E L +++L L+ +++L + + K CD
Sbjct: 107 ---------EFLLTKDHLELN--NILKLEKEKKFNAVLEKIKKCD--------------- 140
Query: 301 AQVLSRHVKRKCIFCATP-------INAISYQQRKIIKSFKIDKDNLDQSLDKSLNKS-- 351
+C+ C TP +N I+Y + I ++F + + DK LN+S
Sbjct: 141 ----------RCVHCTTPRADYKLVLNDITY--KTIYRTFSYQGGAVKTARDKKLNESRE 188
Query: 352 --SNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCL-----IPVLDTTKEL----IAT 400
S ++++K + ++ ++ ++ H CL IP E+ I
Sbjct: 189 IVSAEMVKK------IFDNIKLEYVEMLGISHPKDFCLEVFPVIPSCCRPHEVQDGNIND 242
Query: 401 DIMFIRSLVVPPNN-------LRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIM---- 449
D + + + + NN L SME+ P C +K +++
Sbjct: 243 DDLTYQLMEIVKNNSMIGAIKLEKESMEKQYP--------------ECLKVKEILLLSNV 288
Query: 450 AMKNKEQSDLLSEALK-GIRGDTLNNK-----------LQNSWHELQYNVDLLMDAKLNI 497
+ KE D L + +K G++ NK L + + + N+ ++ N
Sbjct: 289 EKQKKEIDDFLKKPIKNGLKTKKKINKEEITPLDQYLKLHDKYVKYVNNLKFRIETYCNN 348
Query: 498 NKTTGAHQ-----IDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPL 552
++ H I GL++ L GK G IR N++GKR + R+VI PDP L ID + VP
Sbjct: 349 SQGKATHATTGRAIKGLRERLTGKEGQIRNNLLGKRCEMSARTVIGPDPTLKIDEVIVPK 408
Query: 553 EFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAV 605
E A++LT+P V N+ L K+V +G + + +NE G ++I+ + A+
Sbjct: 409 EIAQSLTFPDFVNKHNIDRLTKLVNSGNAIRL---VKKNESGQEIKINLAAAI 458
Score = 49.7 bits (117), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 11/99 (11%)
Query: 17 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 76
R+VI PDP L ID + VP E A++LT+P V N+ L K+V +G + + +NE
Sbjct: 390 RTVIGPDPTLKIDEVIVPKEIAQSLTFPDFVNKHNIDRLTKLVNSGNAIRL---VKKNES 446
Query: 77 GSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKIIT 115
G ++I+ + A+ TP QH I+K IT
Sbjct: 447 GQEIKINLAAAINNHG------TP--LQHDDIIKRPKIT 477
>sp|O27125|RPOA1_METTH DNA-directed RNA polymerase subunit A' OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpoA1 PE=3 SV=1
Length = 870
Score = 105 bits (263), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 78/132 (59%), Gaps = 13/132 (9%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTG--------AHQIDGLKQMLDGKTGMIRQNMMGK 527
+++ W LQY+V D N+ +G + L Q L GK G R N+ GK
Sbjct: 258 VEDLWELLQYHVTTYFD-----NEASGVPPARHRSGRPLKTLAQRLKGKEGRFRSNLSGK 312
Query: 528 RVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGAN 587
RVNF+ R+VI+PDP ++I+ +GVP A+ +T PV VT WN+ +R+ + NGP+V+PGAN
Sbjct: 313 RVNFSARTVISPDPNISINEVGVPEIIAREVTVPVYVTEWNIDRMREYIENGPDVHPGAN 372
Query: 588 MIQNEDGSVVRI 599
+ DG +RI
Sbjct: 373 YVIRPDGRKIRI 384
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP ++I+ +GVP A+ +T PV VT WN+ +R+ + NGP+V+PGAN +
Sbjct: 316 FSARTVISPDPNISINEVGVPEIIAREVTVPVYVTEWNIDRMREYIENGPDVHPGANYVI 375
Query: 74 NEDGSVVRI 82
DG +RI
Sbjct: 376 RPDGRKIRI 384
Score = 63.2 bits (152), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 7/98 (7%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDP---CTTCGNNYTKCKGHI 188
++++++SV ++ +P T++ G+ I GL D +G I DP C TCG +C GH
Sbjct: 19 EDIRKMSVTQIVTPDTYDEDGYPIENGLMDPRLGVI----DPSLRCRTCGAKGGECPGHF 74
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATS 226
G I L PVI+ F + +L+ +C C ++ + T
Sbjct: 75 GSINLARPVIHVGFADTIHKILRSTCRKCGRVLLTETE 112
>sp|Q86AQ5|RPC1_DICDI DNA-directed RNA polymerase III subunit rpc1 OS=Dictyostelium
discoideum GN=polr3a PE=3 SV=1
Length = 1450
Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 63/89 (70%)
Query: 506 IDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVT 565
+ GL Q L GKTG R N+ GKRV+F+GR+VI+PDP LNID + VP A T+TYP VT
Sbjct: 331 VRGLSQRLKGKTGRFRGNLSGKRVDFSGRTVISPDPNLNIDEVAVPQLIALTMTYPERVT 390
Query: 566 PWNVTLLRKMVINGPNVYPGANMIQNEDG 594
+N+ L+K VINGP+ +PGAN I DG
Sbjct: 391 DYNIERLQKYVINGPDRHPGANYIIYADG 419
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 44/64 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP LNID + VP A T+TYP VT +N+ L+K VINGP+ +PGAN I
Sbjct: 356 FSGRTVISPDPNLNIDEVAVPQLIALTMTYPERVTDYNIERLQKYVINGPDRHPGANYII 415
Query: 74 NEDG 77
DG
Sbjct: 416 YADG 419
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 59/107 (55%), Gaps = 2/107 (1%)
Query: 130 TDQEVKQLSVVKVFSPITFNSLGHT-IPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
++ ++ +LS V++ + F+ + P G+ D +G S++ CTTCG + C GH
Sbjct: 23 SEDDIVRLSHVQIVNRELFDLVKRKPTPYGVLDNKLG-TSDKQAMCTTCGLSIVDCVGHF 81
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
G+I+L +PV + + +++ +L++ C C I + + ++ +++
Sbjct: 82 GYIKLQLPVFHIGYLKNIMNILQMICKSCSTILLNEEKKQYYLRKMR 128
>sp|P16355|RPA1_TRYBB DNA-directed RNA polymerase I subunit RPA1 OS=Trypanosoma brucei
brucei GN=TRP11 PE=1 SV=1
Length = 1744
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 131/529 (24%), Positives = 200/529 (37%), Gaps = 123/529 (23%)
Query: 143 FSPITFNSLGHTIPGGLYDLAMGPISERGDP---CTTCGNNYT------KCKGHIGHIEL 193
+ P+ N H YD MG P C TC + T +C GH G + +
Sbjct: 22 WRPVVRNGENHAT---FYDTRMGNFDANPFPPQTCQTCAASLTGKYGNERCHGHFGFVGM 78
Query: 194 P-------------VPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAG 240
P + V+N D L + CF CHK P F + L D G
Sbjct: 79 PRIRPGSAHSDSDRLVVLNPHLAMDADRLFRAKCFFCHKFRAPTFDVERFRQALVLADHG 138
Query: 241 YVTQAKDLEETLFNEENLRLHPAQL-------------VQLVDSHVQSILAHGTKICDIN 287
A L +T+ + H A L V ++ S+V IL C
Sbjct: 139 LPGDALHLLDTV---PTAKGHDAMLNHRRMANEEIVNDVSILQSYVDRILRQRASGCSEE 195
Query: 288 DYK--------GGEELRSAFVAQVLS--RHVKRKCIFCATPINAISYQQRKIIKSFKIDK 337
D K G ++R+ +S R C C T I+ ++ +R I F K
Sbjct: 196 DAKARVTMAQKGTVDVRNDICNMAISHLRSFSGPCSHC-TAISP-TFLKRGGIIFFLFRK 253
Query: 338 DNLDQSLDKSL-------NKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPV 390
NL ++ K + + R Y ++ K L+ E L L P
Sbjct: 254 SNLVTNIAKGFLTQQEVSEWEAVNRLHGRTGTYFDGRQMLFHMKNLFAKEQAILGLLYPN 313
Query: 391 LD-------TTKELIATD---IMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYS 440
L T K + A++ + F+ ++VPP LR S V + N L
Sbjct: 314 LGEPSVFTKTNKVVPASERYKLFFLDRILVPPLPLRLSS-----GVRVNDNGL------- 361
Query: 441 CGSLKSVIMAMKNKEQSDLLS-----EALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKL 495
+I + + SD+L E + ++ N + + DA+
Sbjct: 362 ------IIPDEQTRALSDILGFVEQIECFHTLSANSTNGR------------SFITDAQR 403
Query: 496 NINKTTGAHQIDGLKQMLD-----------GKTGMIRQNMMGKRVNFAGRSVITPDPYLN 544
+N++ + L+Q +D K G+ R NMMGKRVN A RSVI+PDP++
Sbjct: 404 AVNES----NLRNLQQKVDEFYAEIVNSFAKKEGLFRMNMMGKRVNQACRSVISPDPFVE 459
Query: 545 IDSIGVPLEFAKTLTYPVPVT---PWNVTLLRKMVINGPNVYPGANMIQ 590
+ + +P A+ L++P VT P + LL+ V+NGP YPGA I+
Sbjct: 460 PNEVLLPRPLARALSFPEQVTCFAPARMNLLKHCVVNGPRKYPGATHIE 508
Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 17 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVT---PWNVTLLRKMVINGPNVYPGANMIQ 73
RSVI+PDP++ + + +P A+ L++P VT P + LL+ V+NGP YPGA I+
Sbjct: 449 RSVISPDPFVEPNEVLLPRPLARALSFPEQVTCFAPARMNLLKHCVVNGPRKYPGATHIE 508
>sp|P04051|RPC1_YEAST DNA-directed RNA polymerase III subunit RPC1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPO31 PE=1
SV=1
Length = 1460
Score = 104 bits (259), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 111/222 (50%), Gaps = 33/222 (14%)
Query: 386 CLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRN---KLYQSILYSCG 442
C + +D T + R L PP +RP M Q P + + KL + + S
Sbjct: 239 CELLGIDATVPSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTS-- 296
Query: 443 SLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKL------- 495
S+I A +K G ++NN +++ W LQ V + +++
Sbjct: 297 ---SLIKAGLDK--------------GISINNMMEH-WDYLQLTVAMYINSDSVNPAMLP 338
Query: 496 -NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEF 554
+ N I G Q L GK G R N+ GKRV+F+GR+VI+PDP L+ID + VP
Sbjct: 339 GSSNGGGKVKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRV 398
Query: 555 AKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI--QNEDG 594
AK LTYP VT +N L+++++NGPNV+PGAN + +NED
Sbjct: 399 AKVLTYPEKVTRYNRHKLQELIVNGPNVHPGANYLLKRNEDA 440
Score = 72.4 bits (176), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 47/66 (71%), Gaps = 2/66 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI- 72
F R+VI+PDP L+ID + VP AK LTYP VT +N L+++++NGPNV+PGAN +
Sbjct: 375 FSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELIVNGPNVHPGANYLL 434
Query: 73 -QNEDG 77
+NED
Sbjct: 435 KRNEDA 440
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 3/129 (2%)
Query: 109 MKEKIITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGP 166
MKE +++ + L+ + ++ S V+V + F+ P G D MG
Sbjct: 1 MKEVVVSETPKRIKGLEFSALSAADIVAQSEVEVSTRDLFDLEKDRAPKANGALDPKMG- 59
Query: 167 ISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATS 226
+S C TC N C GH GH++L +PV + +F+ +L+ C C I + T
Sbjct: 60 VSSSSLECATCHGNLASCHGHFGHLKLALPVFHIGYFKATIQILQGICKNCSAILLSETD 119
Query: 227 QLLFINQIK 235
+ F+++++
Sbjct: 120 KRQFLHELR 128
>sp|P27625|RPC1_PLAFA DNA-directed RNA polymerase III subunit RPC1 OS=Plasmodium
falciparum PE=3 SV=1
Length = 2339
Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 131/521 (25%), Positives = 210/521 (40%), Gaps = 140/521 (26%)
Query: 95 KRLITPEDQQHRAIMKEKIITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITF-NSLGH 153
KRLI + R + K I R + I + + +++ + S VK+ + + N+ G
Sbjct: 13 KRLIEESSMKKRFV---KDIKRNCEIKSI-RFGIMSKEDIIKYSEVKIMNREMYKNNSGI 68
Query: 154 TIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLS 213
P G+ DL +G + C TC C GH G+IEL PV + +++ + +L
Sbjct: 69 PYPYGVLDLKLGA-HKSNSVCETCNKKLINCSGHFGYIELNYPVFHIGYYKYIIHILYCI 127
Query: 214 CFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHV 273
C C +S LL +I Y K + F +++L
Sbjct: 128 CKYC-------SSLLLSKEKIDF----YCNLKKKSTDDSFYKKHL--------------F 162
Query: 274 QSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSF 333
+ IL + K+ KC C P I +KIIK
Sbjct: 163 KRILNNCKKV--------------------------NKCYICGNPQGVI----KKIIKP- 191
Query: 334 KIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVEAD---FKKLWTNEHLFLKCLIPV 390
+LDQ + I++ +E G ++ E + + KL+ N + + L+ +
Sbjct: 192 -----SLDQFM------KLKHILKVKENGKMIIKEEDLNSLYVLKLFKNINPYHVKLLNI 240
Query: 391 LDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMA 450
+ K + I +L+VPPN +RP SVI+
Sbjct: 241 ENPEK-------LIITALLVPPNTIRP----------------------------SVIID 265
Query: 451 MKNKEQSDL---LSEALKGIRGDTLNNKLQNSWHELQY--NVDLL--------------- 490
+ DL LSE + +T+ N+ N + Q+ NV+ L
Sbjct: 266 EHGTAEDDLTCILSEITQ--LNNTIYNQCTNGYQTNQFLGNVEFLQLQITRFINSDSPAV 323
Query: 491 --MDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSI 548
+ A NI+K G+ Q L GK G R N+ GKRV+F+ R+VI+PDP ++ID +
Sbjct: 324 SQLLATQNISKPGR-----GICQRLKGKEGRFRCNLSGKRVDFSSRTVISPDPNISIDEV 378
Query: 549 GVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 589
+P A LTYP V +N+ L+ ++ NG N +PGAN I
Sbjct: 379 VIPKIIAMRLTYPETVNKYNIDKLKMLIKNGCNKWPGANYI 419
Score = 59.3 bits (142), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 72
F R+VI+PDP ++ID + +P A LTYP V +N+ L+ ++ NG N +PGAN I
Sbjct: 361 FSSRTVISPDPNISIDEVVIPKIIAMRLTYPETVNKYNIDKLKMLIKNGCNKWPGANYI 419
>sp|P09846|RPOA1_METTW DNA-directed RNA polymerase subunit A' OS=Methanothermobacter
thermoautotrophicus (strain Winter) GN=rpoA1 PE=3 SV=2
Length = 865
Score = 103 bits (256), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 120/241 (49%), Gaps = 40/241 (16%)
Query: 367 SEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRP-LSMEQMPP 425
SEV +++ N+ L L E+ + M + L VPP +RP +++E
Sbjct: 174 SEVRERLERITDNDSLLLG-------VNPEVARPEWMVLTVLPVPPVTVRPSITLETG-- 224
Query: 426 VEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQY 485
E S + L ++ I+ + + + ++ + A + I +++ W LQY
Sbjct: 225 -ERSEDDLTHKLVD--------ILRINQRLKENMEAGAPQLI--------VEDLWELLQY 267
Query: 486 NVDLLMDAKLNINKTTG--------AHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVI 537
+V D N+ +G + L Q L GK G R N+ GKRVNF+ R+V+
Sbjct: 268 HVTTYFD-----NEASGVPPARHRSGRPLKTLAQRLKGKEGRFRSNLSGKRVNFSARTVV 322
Query: 538 TPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
+PDP ++++ +GVP AK +T PV VT WN+ +++ + NGP+V+PGAN + DG +
Sbjct: 323 SPDPNVSVNEVGVPELIAKEVTVPVYVTEWNIDRMKEHIENGPDVHPGANYVIRPDGRKI 382
Query: 598 R 598
R
Sbjct: 383 R 383
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 47/68 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+V++PDP ++++ +GVP AK +T PV VT WN+ +++ + NGP+V+PGAN +
Sbjct: 316 FSARTVVSPDPNVSVNEVGVPELIAKEVTVPVYVTEWNIDRMKEHIENGPDVHPGANYVI 375
Query: 74 NEDGSVVR 81
DG +R
Sbjct: 376 RPDGRKIR 383
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHI 191
++++++SV ++ +P T++ G+ I L D +G I C +CG +C GH G I
Sbjct: 19 EDIRKMSVAQIVTPDTYDEDGYPIENELMDPRLGVIGS-SLRCRSCGAKGGECPGHFGSI 77
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATS 226
L PVI+ F + +L C C +I + T
Sbjct: 78 NLARPVIHVGFADTIHKILSSICRKCSRILLTETE 112
>sp|Q5ZL98|RPC1_CHICK DNA-directed RNA polymerase III subunit RPC1 OS=Gallus gallus
GN=POLR3A PE=2 SV=1
Length = 1390
Score = 102 bits (255), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 80/141 (56%), Gaps = 4/141 (2%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
+ W LQ L ++++L+ A + G Q L GK G R N+ GKRV+F+G
Sbjct: 306 IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
R+VI+PDP L ID + VP+ AK LT+P V N+ +RK+V NGP+V+PGAN IQ
Sbjct: 366 RTVISPDPNLRIDEVAVPIHVAKILTFPEKVNKANINFMRKLVRNGPDVHPGANFIQQRH 425
Query: 594 GSVVRISSSQAVQRESLAKRL 614
+ R + RE +A+ L
Sbjct: 426 TQMKRF--LKYGNREKMAQEL 444
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP+ AK LT+P V N+ +RK+V NGP+V+PGAN IQ
Sbjct: 363 FSGRTVISPDPNLRIDEVAVPIHVAKILTFPEKVNKANINFMRKLVRNGPDVHPGANFIQ 422
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ R + RE +A+ L
Sbjct: 423 QRHTQMKRF--LKYGNREKMAQEL 444
Score = 62.8 bits (151), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 58/106 (54%), Gaps = 3/106 (2%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+E++Q + ++V S ++ H P G+ D MG SE+ PC TCG N C GH G
Sbjct: 26 EEMRQQAHIQVVSKNLYSQDNHHAPLQYGVLDHRMG-TSEKDRPCETCGKNLADCLGHYG 84
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
+I+L +P + +F+ V +L++ C C +I + + F++ +K
Sbjct: 85 YIDLELPCFHVGYFKAVIGILQMICKTCCRIMLSVEEKKQFLDYLK 130
>sp|A4IF62|RPC1_BOVIN DNA-directed RNA polymerase III subunit RPC1 OS=Bos taurus
GN=POLR3A PE=2 SV=1
Length = 1390
Score = 102 bits (255), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 79/141 (56%), Gaps = 4/141 (2%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
+ W LQ L ++++L+ A + G Q L GK G R N+ GKRV+F+G
Sbjct: 306 IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
R+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V NGP V+PGAN IQ
Sbjct: 366 RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQQRH 425
Query: 594 GSVVRISSSQAVQRESLAKRL 614
+ R + RE +A+ L
Sbjct: 426 TQMKRF--LKYGNREKMAQEL 444
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V NGP V+PGAN IQ
Sbjct: 363 FSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQ 422
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ R + RE +A+ L
Sbjct: 423 QRHTQMKRF--LKYGNREKMAQEL 444
Score = 59.3 bits (142), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+E++Q + ++V S ++ + P G+ D MG SE+ PC TCG N C GH G
Sbjct: 26 EEMRQQAHIQVVSKNLYSQDNNHSPLLYGVLDHRMG-TSEKDRPCETCGKNLADCLGHYG 84
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
+I+L +P + +FR V +L++ C C I + + F++ +K
Sbjct: 85 YIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKKQFLDYLK 130
>sp|O14802|RPC1_HUMAN DNA-directed RNA polymerase III subunit RPC1 OS=Homo sapiens
GN=POLR3A PE=1 SV=2
Length = 1390
Score = 102 bits (255), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 79/141 (56%), Gaps = 4/141 (2%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
+ W LQ L ++++L+ A + G Q L GK G R N+ GKRV+F+G
Sbjct: 306 IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
R+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V NGP V+PGAN IQ
Sbjct: 366 RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQQRH 425
Query: 594 GSVVRISSSQAVQRESLAKRL 614
+ R + RE +A+ L
Sbjct: 426 TQMKRF--LKYGNREKMAQEL 444
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V NGP V+PGAN IQ
Sbjct: 363 FSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQ 422
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ R + RE +A+ L
Sbjct: 423 QRHTQMKRF--LKYGNREKMAQEL 444
Score = 59.7 bits (143), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 3/106 (2%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+E++Q + ++V S ++ P G+ D MG SE+ PC TCG N C GH G
Sbjct: 26 EEMRQQAHIQVVSKNLYSQDNQHAPLLYGVLDHRMG-TSEKDRPCETCGKNLADCLGHYG 84
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIK 235
+I+L +P + +FR V +L++ C C I + + F++ +K
Sbjct: 85 YIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKKQFLDYLK 130
>sp|Q75A34|RPB1_ASHGO DNA-directed RNA polymerase II subunit RPB1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=RPB1 PE=3 SV=2
Length = 1745
Score = 102 bits (254), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 80/136 (58%), Gaps = 13/136 (9%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQ--------IDGLKQMLDGKTGMIRQNMMGK 527
+Q S LQ++V MD N G Q I ++ L GK G IR N+MGK
Sbjct: 289 IQESESLLQFHVATYMD-----NDIAGQPQAVQKSGRPIKSIRARLKGKEGRIRGNLMGK 343
Query: 528 RVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGAN 587
RV+F+ R+VI+ DP L++D +GVP AKTLTYP VTP+N+ L ++V NGPN +PGA
Sbjct: 344 RVDFSARTVISGDPNLDLDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAK 403
Query: 588 MIQNEDGSVVRISSSQ 603
+ ++G + + S+
Sbjct: 404 YVIRDNGDRIDLRYSK 419
Score = 73.2 bits (178), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 49/73 (67%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+ DP L++D +GVP AKTLTYP VTP+N+ L ++V NGPN +PGA +
Sbjct: 347 FSARTVISGDPNLDLDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVI 406
Query: 74 NEDGSVVRISSSQ 86
++G + + S+
Sbjct: 407 RDNGDRIDLRYSK 419
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIP-GGLYDLAMGPISERGDPCTTCGNNYT 182
++ ++ +EV+ +SV K+ P T + GGL D +G I +R C TCG
Sbjct: 17 VQFGLFSPEEVRAISVAKIEFPETMDETQMRAKVGGLNDPRLGSI-DRNFKCQTCGEGMN 75
Query: 183 KCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLL 229
C GH GHIEL PV + F ++ + + C C K+ + ++L+
Sbjct: 76 DCPGHFGHIELAKPVFHIGFISKIKKVCECVCMHCGKLLLDEYNELM 122
>sp|P35084|RPB1_DICDI DNA-directed RNA polymerase II subunit rpb1 OS=Dictyostelium
discoideum GN=polr2a PE=2 SV=2
Length = 1727
Score = 102 bits (254), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 63/87 (72%)
Query: 509 LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWN 568
++Q L GK G IR N+MGKRV+F+ R+VIT DP L+ID +GVP A LTYP VTP+N
Sbjct: 330 IRQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLSIDQVGVPRSIALNLTYPETVTPFN 389
Query: 569 VTLLRKMVINGPNVYPGANMIQNEDGS 595
+ +R+++ NGP+ +PGA I EDG+
Sbjct: 390 IDKMRELIRNGPSEHPGAKYIIREDGT 416
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 45/65 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L+ID +GVP A LTYP VTP+N+ +R+++ NGP+ +PGA I
Sbjct: 352 FSARTVITADPNLSIDQVGVPRSIALNLTYPETVTPFNIDKMRELIRNGPSEHPGAKYII 411
Query: 74 NEDGS 78
EDG+
Sbjct: 412 REDGT 416
>sp|P35074|RPB1_CAEBR DNA-directed RNA polymerase II subunit RPB1 OS=Caenorhabditis
briggsae GN=rpb-1 PE=3 SV=2
Length = 1853
Score = 100 bits (249), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 74/120 (61%), Gaps = 3/120 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY+V L+D L G + +KQ L GK G IR N+MGKRV+F+ R+VIT
Sbjct: 304 LQYHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITA 363
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
DP L ID++GVP A+ LT+P VTP+NV L+++V G YPGA I E+G+ V +
Sbjct: 364 DPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAKYIIRENGARVDL 423
Score = 66.2 bits (160), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHI 191
+E+K++SV V P + + G GGL D G I RG C TC N T C GH GH+
Sbjct: 26 EEIKRMSVAHVEFPEVYEN-GKPKMGGLMDPRQGVIDRRGR-CMTCAGNLTDCPGHFGHL 83
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATS 226
EL PV + F +L+ CF C ++ I T+
Sbjct: 84 ELAKPVFHIGFLTKSLKILRCVCFYCGRLLIDKTN 118
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 45/69 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L ID++GVP A+ LT+P VTP+NV L+++V G YPGA I
Sbjct: 355 FSARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAKYII 414
Query: 74 NEDGSVVRI 82
E+G+ V +
Sbjct: 415 RENGARVDL 423
>sp|Q8SSC4|RPB1_ENCCU DNA-directed RNA polymerase II subunit RPB1 OS=Encephalitozoon
cuniculi (strain GB-M1) GN=RPB1 PE=3 SV=1
Length = 1599
Score = 99.8 bits (247), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 107/220 (48%), Gaps = 36/220 (16%)
Query: 403 MFIRSLVVPPNNLRP-LSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLS 461
M + L+VPP +RP + ME E I+ S G LK EQ
Sbjct: 205 MILTVLLVPPPAVRPSIVMEGSLRGEDDLTHKLADIIKSNGYLKKY-------EQ----- 252
Query: 462 EALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDG-----LKQMLDGK 516
+G G + + Q LQ++V +D +I A Q G L L GK
Sbjct: 253 ---EGAPGHIVRDYEQ----LLQFHVATFIDN--DIGGLPQALQKSGRPLKSLSARLKGK 303
Query: 517 TGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMV 576
G IR N+MGKRV+F+ R+VITPDP ++++ +GVPLE AK T+P VT +N+ L K+V
Sbjct: 304 EGRIRGNLMGKRVDFSARTVITPDPNISLEEVGVPLEIAKIHTFPEKVTSFNIDRLEKLV 363
Query: 577 INGPNVYPGANMIQNEDG---------SVVRISSSQAVQR 607
GPN +PGAN + DG S +R+ V+R
Sbjct: 364 RAGPNEHPGANYVLRSDGQKIDLNFNRSDIRLEEGYVVER 403
Score = 73.2 bits (178), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 51/86 (59%), Gaps = 9/86 (10%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP ++++ +GVPLE AK T+P VT +N+ L K+V GPN +PGAN +
Sbjct: 318 FSARTVITPDPNISLEEVGVPLEIAKIHTFPEKVTSFNIDRLEKLVRAGPNEHPGANYVL 377
Query: 74 NEDG---------SVVRISSSQAVQR 90
DG S +R+ V+R
Sbjct: 378 RSDGQKIDLNFNRSDIRLEEGYVVER 403
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
++ ++ EV+ SV + P G GGL DL MG ++R C +CG +
Sbjct: 13 IQFGLFSPDEVRNGSVALIVHPEVMEG-GVPKTGGLIDLRMG-TTDRMYLCQSCGGDNFS 70
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIP 223
C GH GHIEL P+ + + ++ +L+ CF C KI IP
Sbjct: 71 CPGHFGHIELTKPMFHVGYISKIKKVLECVCFYCSKIKIP 110
>sp|P11512|RPOA1_SULAC DNA-directed RNA polymerase subunit A' OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rpoA1 PE=3 SV=2
Length = 880
Score = 99.4 bits (246), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 78/139 (56%), Gaps = 5/139 (3%)
Query: 476 LQNSWHELQYNVDLLMDAK---LNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFA 532
+++ W LQY+V D + L K + L Q L GK G R N+ GKRV+F+
Sbjct: 262 IEDLWDLLQYHVATYFDNEIPGLPPAKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFS 321
Query: 533 GRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
R+VI+PDP L+ID +G+P A+ LT P VT N+ +R+ +INGP+ +PGAN +
Sbjct: 322 ARTVISPDPNLSIDEVGIPYTIARMLTVPERVTNINIERIRQYIINGPDKWPGANYVIKP 381
Query: 593 DGSVVRISSSQAVQRESLA 611
DG RI R+ LA
Sbjct: 382 DGR--RIDLRYVKDRKELA 398
Score = 72.4 bits (176), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 109 MKEKIITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPIS 168
M EKII +K + E++Q+SV + + ++ G I GG+ D +G I
Sbjct: 1 MSEKIIRG-------VKFGVLSPNEIRQMSVTAIITSEVYDEDGTPIEGGVMDPKLGVI- 52
Query: 169 ERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINI 222
E G C CGN C GH GHIEL PVI+ + + + L+ +C+ C +I I
Sbjct: 53 EPGQKCPVCGNTLAGCPGHFGHIELIKPVIHIGYVKHIYDFLRSTCWRCGRIKI 106
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L+ID +G+P A+ LT P VT N+ +R+ +INGP+ +PGAN +
Sbjct: 320 FSARTVISPDPNLSIDEVGIPYTIARMLTVPERVTNINIERIRQYIINGPDKWPGANYVI 379
Query: 74 NEDGSVVRISSSQAVQRESLA 94
DG RI R+ LA
Sbjct: 380 KPDGR--RIDLRYVKDRKELA 398
>sp|P04050|RPB1_YEAST DNA-directed RNA polymerase II subunit RPB1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPO21 PE=1
SV=2
Length = 1733
Score = 99.4 bits (246), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 75/129 (58%), Gaps = 13/129 (10%)
Query: 483 LQYNVDLLMDAKLNINKTTGAHQ--------IDGLKQMLDGKTGMIRQNMMGKRVNFAGR 534
LQ++V MD N G Q + ++ L GK G IR N+MGKRV+F+ R
Sbjct: 296 LQFHVATYMD-----NDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSAR 350
Query: 535 SVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDG 594
+VI+ DP L +D +GVP AKTLTYP VTP+N+ L ++V NGPN +PGA + + G
Sbjct: 351 TVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDSG 410
Query: 595 SVVRISSSQ 603
+ + S+
Sbjct: 411 DRIDLRYSK 419
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 47/73 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+ DP L +D +GVP AKTLTYP VTP+N+ L ++V NGPN +PGA +
Sbjct: 347 FSARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVI 406
Query: 74 NEDGSVVRISSSQ 86
+ G + + S+
Sbjct: 407 RDSGDRIDLRYSK 419
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIP-GGLYDLAMGPISERGDPCTTCGNNYT 182
++ ++ +EV+ +SV K+ P T + GGL D +G I +R C TC
Sbjct: 17 VQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSI-DRNLKCQTCQEGMN 75
Query: 183 KCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLL 229
+C GH GHI+L PV + F ++ + + C C K+ + ++L+
Sbjct: 76 ECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELM 122
>sp|P16356|RPB1_CAEEL DNA-directed RNA polymerase II subunit RPB1 OS=Caenorhabditis
elegans GN=ama-1 PE=1 SV=3
Length = 1856
Score = 99.0 bits (245), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 74/120 (61%), Gaps = 3/120 (2%)
Query: 483 LQYNVDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQ++V L+D L G + +KQ L GK G IR N+MGKRV+F+ R+VIT
Sbjct: 304 LQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITA 363
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
DP L ID++GVP A+ LT+P VTP+NV L+++V G YPGA I E+G+ V +
Sbjct: 364 DPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAKYIIRENGARVDL 423
Score = 66.2 bits (160), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHI 191
+E+K++SV V P + + G GGL D G I RG C TC N T C GH GH+
Sbjct: 26 EEIKRMSVAHVEFPEVYEN-GKPKLGGLMDPRQGVIDRRGR-CMTCAGNLTDCPGHFGHL 83
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKINI 222
EL PV + F +L+ CF C ++ I
Sbjct: 84 ELAKPVFHIGFLTKTLKILRCVCFYCGRLLI 114
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 45/69 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L ID++GVP A+ LT+P VTP+NV L+++V G YPGA I
Sbjct: 355 FSARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAKYII 414
Query: 74 NEDGSVVRI 82
E+G+ V +
Sbjct: 415 RENGARVDL 423
>sp|Q6BI69|RPC1_DEBHA DNA-directed RNA polymerase III subunit RPC1 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=RPC1 PE=3 SV=2
Length = 1457
Score = 99.0 bits (245), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 81/139 (58%), Gaps = 9/139 (6%)
Query: 468 RGDTLNNKLQNSWHELQYNVDLLMDAK--------LNINKTTGAHQIDGLKQMLDGKTGM 519
+G ++NN L W LQ +V + +++ + + + I G Q L GK G
Sbjct: 302 KGISINN-LMEQWDYLQLSVAMYINSDSANPALLPSSGGGSKSSKPIRGFCQRLKGKQGR 360
Query: 520 IRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVING 579
R N+ GKRV+F+GR+VI+PDP L ID + VP AK LTYP T +N L+K++++G
Sbjct: 361 FRGNLSGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNRKKLQKLILSG 420
Query: 580 PNVYPGANMIQNEDGSVVR 598
PNV+PGAN + ++ S R
Sbjct: 421 PNVHPGANYLLKQNESAKR 439
Score = 70.1 bits (170), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 45/68 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP AK LTYP T +N L+K++++GPNV+PGAN +
Sbjct: 372 FSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNRKKLQKLILSGPNVHPGANYLL 431
Query: 74 NEDGSVVR 81
++ S R
Sbjct: 432 KQNESAKR 439
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 9/132 (6%)
Query: 109 MKEKIITRQEVVPEILK---LKYYTDQEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLA 163
MKE ++ +V P+ +K + +++ S V+V + ++ IP GG D
Sbjct: 1 MKEVVV---DVAPKCIKGIEFGALSAKDIIAQSEVEVHTRDLYDLEKGRIPKDGGALDTK 57
Query: 164 MGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIP 223
MG IS + C TC N C GH GHI+L +PV + +F+ +L+ C C + +
Sbjct: 58 MG-ISSNANECATCHGNLASCHGHFGHIKLALPVFHVGYFKATIQVLQCICKNCSAVLLD 116
Query: 224 ATSQLLFINQIK 235
++ F+N ++
Sbjct: 117 EQTKRSFLNDLR 128
>sp|P36594|RPB1_SCHPO DNA-directed RNA polymerase II subunit rpb1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpb1 PE=1 SV=1
Length = 1752
Score = 98.2 bits (243), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 75/123 (60%), Gaps = 13/123 (10%)
Query: 483 LQYNVDLLMDAKLNINKTTGAHQ--------IDGLKQMLDGKTGMIRQNMMGKRVNFAGR 534
LQ++V MD N+ G Q + ++ L GK G +R N+MGKRV+F+ R
Sbjct: 302 LQFHVATYMD-----NEIAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSAR 356
Query: 535 SVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDG 594
+VIT DP L++D +GVP AKTLTYP VTP+N+ L+++V NGP+ +PGA I + G
Sbjct: 357 TVITGDPNLSLDELGVPRSIAKTLTYPETVTPYNIYQLQELVRNGPDEHPGAKYIIRDTG 416
Query: 595 SVV 597
+
Sbjct: 417 ERI 419
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 46/67 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP AKTLTYP VTP+N+ L+++V NGP+ +PGA I
Sbjct: 353 FSARTVITGDPNLSLDELGVPRSIAKTLTYPETVTPYNIYQLQELVRNGPDEHPGAKYII 412
Query: 74 NEDGSVV 80
+ G +
Sbjct: 413 RDTGERI 419
Score = 67.4 bits (163), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIP-GGLYDLAMGPISERGDPCTTCGNN 180
E ++ + +E++ +SV K+ P T + G GGL D +G I +R C TCG
Sbjct: 17 EEVQFGILSPEEIRSMSVAKIEFPETMDESGQRPRVGGLLDPRLGTI-DRQFKCQTCGET 75
Query: 181 YTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATS 226
C GH GHIEL PV + F ++ +L+ C+ C K+ I +++
Sbjct: 76 MADCPGHFGHIELAKPVFHIGFLSKIKKILECVCWNCGKLKIDSSN 121
>sp|A5DCV3|RPB1_PICGU DNA-directed RNA polymerase II subunit RPB1 (Fragments)
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
/ DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=RPB1
PE=3 SV=2
Length = 1579
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 75/122 (61%), Gaps = 7/122 (5%)
Query: 483 LQYNVDLLMDAKLN-----INKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVI 537
LQ++V MD + + KT I ++ L GK G +R N+MGKRV+F+ R+VI
Sbjct: 300 LQFHVATYMDNDIAGQPQALQKT--GRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVI 357
Query: 538 TPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
+ DP L++D +GVP+ A+TLTYP VTP+N+ L + V NGPN +PGA + + G +
Sbjct: 358 SGDPNLDLDQVGVPISIARTLTYPEIVTPYNIHRLTEYVRNGPNEHPGAKYVIRDTGDRI 417
Query: 598 RI 599
+
Sbjct: 418 DL 419
Score = 69.7 bits (169), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 46/69 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+ DP L++D +GVP+ A+TLTYP VTP+N+ L + V NGPN +PGA +
Sbjct: 351 FSARTVISGDPNLDLDQVGVPISIARTLTYPEIVTPYNIHRLTEYVRNGPNEHPGAKYVI 410
Query: 74 NEDGSVVRI 82
+ G + +
Sbjct: 411 RDTGDRIDL 419
Score = 63.2 bits (152), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 6/109 (5%)
Query: 132 QEVKQLSVVKVFSPITFN-SLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
+EV+ +SV K+ P T + + GGL D +G I +R C TCG + +C GH GH
Sbjct: 26 EEVRAISVAKIEYPETMDQATKRPREGGLNDPRLGSI-DRNFKCQTCGEDMAECPGHFGH 84
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINI----PATSQLLFINQIK 235
IEL PV + F ++ + + C C K+ + PA +Q + I K
Sbjct: 85 IELAKPVFHIGFIAKIKKVCECVCMHCGKLLLDESNPAMAQAIRIRDPK 133
>sp|P41556|RPOA1_METVS DNA-directed RNA polymerase subunit A' OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rpoA1 PE=3 SV=1
Length = 889
Score = 96.7 bits (239), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 74/126 (58%), Gaps = 3/126 (2%)
Query: 467 IRGDTLNNKLQNSWHELQYNVDLLMDAK---LNINKTTGAHQIDGLKQMLDGKTGMIRQN 523
I G N +++ W LQY+++ D + + + + L Q L GK G R N
Sbjct: 256 INGGAPNLIIEDLWDLLQYHINTYFDNEAPGIPPARHRSGRPLRTLAQRLKGKEGRFRHN 315
Query: 524 MMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVY 583
+ GKRVNF+ R+VI+PDP L+I+ +G+P AK LT P VTP+N+ +RK++ NG + +
Sbjct: 316 LAGKRVNFSARTVISPDPRLSINEVGIPELIAKELTVPEKVTPYNIERIRKLIENGSDKH 375
Query: 584 PGANMI 589
PG N +
Sbjct: 376 PGVNYV 381
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 60/110 (54%), Gaps = 2/110 (1%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHI 191
++++ +SV K+ + T++ G+ I GGL D +G I + G C +C C GH GHI
Sbjct: 21 EQIRTMSVAKIVTADTYDDDGYPIDGGLMDTRLGVI-DPGLVCKSCSGRVGTCPGHFGHI 79
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQ-IKLLDAG 240
EL VI+ F +D+ LLK C C K+ + + ++ + +KL + G
Sbjct: 80 ELSKSVIHIGFAKDIYKLLKAVCPHCGKVTVTEIKRDEYLEKMLKLEEDG 129
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 72
F R+VI+PDP L+I+ +G+P AK LT P VTP+N+ +RK++ NG + +PG N +
Sbjct: 323 FSARTVISPDPRLSINEVGIPELIAKELTVPEKVTPYNIERIRKLIENGSDKHPGVNYV 381
>sp|P0CX02|RPOA1_HALSA DNA-directed RNA polymerase subunit A' OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rpoA1 PE=3
SV=1
Length = 971
Score = 95.5 bits (236), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 80/144 (55%), Gaps = 10/144 (6%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQIDG-----LKQMLDGKTGMIRQNMMGKRVN 530
+++ W LQY+V MD + I+ T A G L Q L GK G R ++ GKRVN
Sbjct: 334 IEDLWELLQYHVTTFMDNE--ISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVN 391
Query: 531 FAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 590
F+ R+VI+PDP L+++ +GVP A +T + V N+ R+ V NGP +PGAN +
Sbjct: 392 FSARTVISPDPTLSLNEVGVPDRVATEMTQTMVVNEQNLERARRYVRNGPEGHPGANYVT 451
Query: 591 NEDGSVVRISSSQAVQRESLAKRL 614
DG VR++ E LA+R+
Sbjct: 452 RPDGRRVRVTEKVC---EELAERV 472
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHI 191
+E + +S KV + T++ G I GL D +G I + G C TCG C GH GHI
Sbjct: 21 EEYRDMSATKVITADTYDDDGFPIDMGLMDPRLGVI-DPGLECKTCGQRSGGCNGHFGHI 79
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKI 220
EL PVI+ F + ++ LL+ +C C +
Sbjct: 80 ELAAPVIHVGFSKLIRRLLRGTCRECASL 108
Score = 62.8 bits (151), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L+++ +GVP A +T + V N+ R+ V NGP +PGAN +
Sbjct: 392 FSARTVISPDPTLSLNEVGVPDRVATEMTQTMVVNEQNLERARRYVRNGPEGHPGANYVT 451
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKII 114
DG VR++ E LA+R + P + R ++ II
Sbjct: 452 RPDGRRVRVTEKVC---EELAER-VEPGWEVQRHLIDGDII 488
>sp|B0R8D4|RPOA1_HALS3 DNA-directed RNA polymerase subunit A' OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rpoA1 PE=1 SV=1
Length = 971
Score = 95.5 bits (236), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 80/144 (55%), Gaps = 10/144 (6%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQIDG-----LKQMLDGKTGMIRQNMMGKRVN 530
+++ W LQY+V MD + I+ T A G L Q L GK G R ++ GKRVN
Sbjct: 334 IEDLWELLQYHVTTFMDNE--ISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVN 391
Query: 531 FAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 590
F+ R+VI+PDP L+++ +GVP A +T + V N+ R+ V NGP +PGAN +
Sbjct: 392 FSARTVISPDPTLSLNEVGVPDRVATEMTQTMVVNEQNLERARRYVRNGPEGHPGANYVT 451
Query: 591 NEDGSVVRISSSQAVQRESLAKRL 614
DG VR++ E LA+R+
Sbjct: 452 RPDGRRVRVTEKVC---EELAERV 472
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHI 191
+E + +S KV + T++ G I GL D +G I + G C TCG C GH GHI
Sbjct: 21 EEYRDMSATKVITADTYDDDGFPIDMGLMDPRLGVI-DPGLECKTCGQRSGGCNGHFGHI 79
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKI 220
EL PVI+ F + ++ LL+ +C C +
Sbjct: 80 ELAAPVIHVGFSKLIRRLLRGTCRECASL 108
Score = 62.8 bits (151), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L+++ +GVP A +T + V N+ R+ V NGP +PGAN +
Sbjct: 392 FSARTVISPDPTLSLNEVGVPDRVATEMTQTMVVNEQNLERARRYVRNGPEGHPGANYVT 451
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKII 114
DG VR++ E LA+R + P + R ++ II
Sbjct: 452 RPDGRRVRVTEKVC---EELAER-VEPGWEVQRHLIDGDII 488
>sp|P08968|RPC1_TRYBB DNA-directed RNA polymerase III subunit RPC1 OS=Trypanosoma brucei
brucei PE=3 SV=1
Length = 1530
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 78/143 (54%), Gaps = 4/143 (2%)
Query: 474 NKLQNSWHELQYNVDLLMDAKL-NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFA 532
+ +W LQ L+D+ L + Q L K G R N+ GKRV+++
Sbjct: 308 TRYTETWEMLQMRAARLLDSSLPGFPPNVRTSDLKSYAQRLKSKHGRFRCNLSGKRVDYS 367
Query: 533 GRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ-N 591
GRSVI+PDP L++D + VPL A+ LTYP V N L+R++V NGP+V+PGA +
Sbjct: 368 GRSVISPDPNLDVDELAVPLHVARVLTYPQRVFKANHELMRRLVRNGPHVHPGATTVYLA 427
Query: 592 EDGSVVRISSSQAVQRESLAKRL 614
++GS + + + R LA RL
Sbjct: 428 QEGSKKSLKNER--DRHRLAARL 448
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 53/85 (62%), Gaps = 3/85 (3%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
+ RSVI+PDP L++D + VPL A+ LTYP V N L+R++V NGP+V+PGA +
Sbjct: 366 YSGRSVISPDPNLDVDELAVPLHVARVLTYPQRVFKANHELMRRLVRNGPHVHPGATTVY 425
Query: 74 -NEDGSVVRISSSQAVQRESLAKRL 97
++GS + + + R LA RL
Sbjct: 426 LAQEGSKKSLKNER--DRHRLAARL 448
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 158 GLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLC 217
G+ D +G + +R C TCG N +C GH GHI+L PV + FF V + + C C
Sbjct: 59 GVNDARLG-VCDRLSICETCGLNSIECVGHPGHIDLEAPVFHLGFFTTVLRICRTICKRC 117
Query: 218 HKI 220
+
Sbjct: 118 SHV 120
>sp|P14248|RPB1_PLAFD DNA-directed RNA polymerase II subunit RPB1 OS=Plasmodium
falciparum (isolate CDC / Honduras) GN=RPII PE=3 SV=1
Length = 2452
Score = 94.4 bits (233), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 84/151 (55%), Gaps = 8/151 (5%)
Query: 476 LQNSWHELQYNVDLLMDAK---LNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFA 532
LQ+ LQ+++ L D + I T I ++ L GK G +R N+MGKRV+F+
Sbjct: 322 LQDLCSLLQFHITTLFDNDIPGMPIATTRSKKPIKAIRTRLKGKEGRLRGNLMGKRVDFS 381
Query: 533 GRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
R+VIT DP LNID IGVP A TLT+ VTP N L+K+V GP +PGA I +
Sbjct: 382 ARTVITGDPNLNIDYIGVPKSVAMTLTFCETVTPLNYDNLKKLVERGPYEWPGAKYIIRD 441
Query: 593 DGSV-----VRISSSQAVQRESLAKRLITPE 618
+G+ VR +S + ++ +R +T E
Sbjct: 442 NGTKYDLRHVRRNSEKELEYGYKVERHMTDE 472
Score = 65.9 bits (159), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 54/94 (57%), Gaps = 5/94 (5%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP LNID IGVP A TLT+ VTP N L+K+V GP +PGA I
Sbjct: 380 FSARTVITGDPNLNIDYIGVPKSVAMTLTFCETVTPLNYDNLKKLVERGPYEWPGAKYII 439
Query: 74 NEDGSV-----VRISSSQAVQRESLAKRLITPED 102
++G+ VR +S + ++ +R +T ED
Sbjct: 440 RDNGTKYDLRHVRRNSEKELEYGYKVERHMTDED 473
Score = 55.8 bits (133), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 5/105 (4%)
Query: 134 VKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIEL 193
+K++SV ++ + + G GGL D+ MG I R C TC N C GH GHIEL
Sbjct: 30 IKKISVCEIVNVDIYKD-GFPREGGLNDIRMGTIDYRT-LCGTCNMNVKYCPGHFGHIEL 87
Query: 194 PVPVINTLFFRDVQLLLKLSCFLCHKI--NIPATSQLLFINQIKL 236
P+ + F V +L+ C+ C ++ N+ +S++ +I +IK+
Sbjct: 88 AKPMYHYGFMNVVLNVLRCVCYHCGRLLCNV-NSSKVKYIEKIKV 131
>sp|Q58445|RPOA1_METJA DNA-directed RNA polymerase subunit A' OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rpoA1 PE=3 SV=2
Length = 1341
Score = 92.4 bits (228), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 102/198 (51%), Gaps = 23/198 (11%)
Query: 396 ELIATDIMFIRSLVVPPNNLRP-LSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNK 454
E+ + M + L VPP +RP +++E E S + L ++ I+ + N+
Sbjct: 203 EVARPEWMVLTVLPVPPVTVRPSITLETG---ERSEDDLTHKLV--------DIIRINNR 251
Query: 455 EQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAK---LNINKTTGAHQIDGLKQ 511
+ + I G N +++ W+ LQY+V+ D + + K + L Q
Sbjct: 252 LEEN--------IEGGAPNLIIEDLWNLLQYHVNTYFDNEAPGIPPAKHRSGRPLKTLAQ 303
Query: 512 MLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTL 571
L GK G R N+ GKRVNF+ R+VI+PDP L+I+ +GVP AK LT P VT +N+
Sbjct: 304 RLKGKEGRFRYNLAGKRVNFSSRTVISPDPCLSINEVGVPEVVAKELTVPEKVTKYNIER 363
Query: 572 LRKMVINGPNVYPGANMI 589
+R+++ NG +PG N +
Sbjct: 364 IRQLLRNGSEKHPGVNYV 381
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
Query: 134 VKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIEL 193
++Q+SV K+ +P T++ G+ I GGL D +G I + G C TCG +C GH GHIEL
Sbjct: 23 IRQMSVAKIVTPDTYDEDGYPIDGGLMDTRLGVI-DPGLVCKTCGGRIGECPGHFGHIEL 81
Query: 194 PVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLD 238
PVI+ F + + +LK C C ++ I T + + +++ L+
Sbjct: 82 AKPVIHIGFAKTIYKILKAVCPHCGRVAISETKRKEILEKMEKLE 126
Score = 59.3 bits (142), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 39/59 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 72
F R+VI+PDP L+I+ +GVP AK LT P VT +N+ +R+++ NG +PG N +
Sbjct: 323 FSSRTVISPDPCLSINEVGVPEVVAKELTVPEKVTKYNIERIRQLLRNGSEKHPGVNYV 381
>sp|Q03585|RPOA1_THEAC DNA-directed RNA polymerase subunit A' OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=rpoA1 PE=3 SV=1
Length = 885
Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 118/504 (23%), Positives = 200/504 (39%), Gaps = 131/504 (25%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK 183
+K + E+++LS VKV + T++ G+ I GL DL MG I +P C K
Sbjct: 11 IKFALLSPDEIRKLSQVKVITADTYDDDGYPIEHGLMDLHMGVI----EPGLRCATCGGK 66
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKL-LDAGYV 242
GH F ++L + + + F+ +IK+ LDA
Sbjct: 67 VDECPGH------------FGHIELAMPVV-------------HVGFVKEIKMFLDATCR 101
Query: 243 TQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKI-CDINDYKGGEELRSAFVA 301
+ + ++L D +++ L K+ + D + E L +V
Sbjct: 102 SCGR-------------------IKLTDDEIRTYLPEIQKMDFETGDPEDIEILTKKYVD 142
Query: 302 QVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQ 361
R V C C QQ KII LDK RE+
Sbjct: 143 LASQRMV---CPHCGA-------QQSKII-------------LDKPTTF--------REE 171
Query: 362 GY---VMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRP- 417
G + E+ +++ ++ +F + + M + L VPP N+RP
Sbjct: 172 GTNVKITPKEIRERLERIPDDDLIFFGF-------NPKTARPEWMVLTVLPVPPINVRPS 224
Query: 418 LSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQ 477
+++E E S + L ++ + ++ + +E D S L ++
Sbjct: 225 ITLETG---ERSEDDLTHKLV------DIIRISQRLRESRDNGSPQLI----------IE 265
Query: 478 NSWHELQYNVDLLMDAKLNINKTTG--------AHQIDGLKQMLDGKTGMIRQNMMGKRV 529
+ W LQ++V D N+T G + L Q L GK G R N+ GKRV
Sbjct: 266 DLWDLLQFHVTTYFD-----NQTPGIPPARHRSGRALKTLVQRLKGKEGRFRSNLSGKRV 320
Query: 530 NFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPN-------V 582
+F+ R+VI+P+PYL+++ +GVP A+ LT PV V +N+ +R+++ G N
Sbjct: 321 SFSSRTVISPEPYLSVNEVGVPERAARELTVPVIVNQFNIDEMRELIKRGRNPRDQFGRY 380
Query: 583 YPGANMIQNEDGSVVRISSSQAVQ 606
G N + DG ++I+ A +
Sbjct: 381 VTGVNYVIRPDGRRIKITDQNAAE 404
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPN-------VY 66
F R+VI+P+PYL+++ +GVP A+ LT PV V +N+ +R+++ G N
Sbjct: 322 FSSRTVISPEPYLSVNEVGVPERAARELTVPVIVNQFNIDEMRELIKRGRNPRDQFGRYV 381
Query: 67 PGANMIQNEDGSVVRISSSQAVQ 89
G N + DG ++I+ A +
Sbjct: 382 TGVNYVIRPDGRRIKITDQNAAE 404
>sp|P18616|RPB1_ARATH DNA-directed RNA polymerase II subunit RPB1 OS=Arabidopsis thaliana
GN=RPB205 PE=1 SV=3
Length = 1839
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 70/119 (58%), Gaps = 8/119 (6%)
Query: 483 LQYNVDLLMDAKL----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
LQ+++ D +L + +G I + L K G IR N+MGKRV+F+ R+VIT
Sbjct: 307 LQFHIATYFDNELPGQPRATQKSG-RPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 365
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYP---GANMIQNEDG 594
PDP +NID +GVP A LTYP VTP+N+ L+++V GP+ P GA I +DG
Sbjct: 366 PDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYIIRDDG 424
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 43/67 (64%), Gaps = 3/67 (4%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYP---GAN 70
F R+VITPDP +NID +GVP A LTYP VTP+N+ L+++V GP+ P GA
Sbjct: 358 FSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAK 417
Query: 71 MIQNEDG 77
I +DG
Sbjct: 418 YIIRDDG 424
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 2/98 (2%)
Query: 123 ILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYT 182
+++ + E++Q+SV+ V T G GGL D +G I +R C TC N
Sbjct: 17 VVQFGILSPDEIRQMSVIHVEHSETTEK-GKPKVGGLSDTRLGTI-DRKVKCETCMANMA 74
Query: 183 KCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKI 220
+C GH G++EL P+ + F + V +++ CF C KI
Sbjct: 75 ECPGHFGYLELAKPMYHVGFMKTVLSIMRCVCFNCSKI 112
>sp|Q7T6X5|RPO1_MIMIV DNA-directed RNA polymerase subunit 1 OS=Acanthamoeba polyphaga
mimivirus GN=RPO1 PE=1 SV=2
Length = 1495
Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 54/81 (66%)
Query: 509 LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWN 568
+ + L GK G IR N+MGKRV+ + R+VIT DP + ++ +GVPL AK LT+ VT N
Sbjct: 333 MSERLRGKEGRIRGNLMGKRVDMSARTVITSDPNIALNEVGVPLIIAKNLTFDEIVTEHN 392
Query: 569 VTLLRKMVINGPNVYPGANMI 589
+ L ++V NG VYPGAN +
Sbjct: 393 IEYLTQLVKNGKRVYPGANFV 413
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 37/56 (66%)
Query: 17 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 72
R+VIT DP + ++ +GVPL AK LT+ VT N+ L ++V NG VYPGAN +
Sbjct: 358 RTVITSDPNIALNEVGVPLIIAKNLTFDEIVTEHNIEYLTQLVKNGKRVYPGANFV 413
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 147 TFNSLGHT-IPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRD 205
TFNS + + GG+ D +G ++E C+TCG +C GH GHI+ PV + +
Sbjct: 48 TFNSNNNEPVQGGVIDKRLG-VTESHLECSTCGETALRCPGHFGHIKFVEPVFHMGYLIY 106
Query: 206 VQLLLKLSCFLCHKI 220
++ +L C C+K+
Sbjct: 107 LKHILSCICIRCNKL 121
>sp|P17545|RPB1B_TRYBB DNA-directed RNA polymerase II subunit RPB1-B OS=Trypanosoma brucei
brucei GN=TRP5.9 PE=1 SV=1
Length = 1766
Score = 79.3 bits (194), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
Query: 499 KTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTL 558
K ++ L + L GK G +R N+MGKRV+F+ R+VIT DP +++D +GVP A TL
Sbjct: 323 KVNDTKKLKSLTERLKGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTL 382
Query: 559 TYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRIS 600
T+P V N L + VYP AN I + +G++ +++
Sbjct: 383 TFPERVNTINKKRLTEFARR--TVYPSANYIHHPNGTITKLA 422
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP +++D +GVP A TLT+P V N L + VYP AN I
Sbjct: 355 FSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTINKKRLTEFARR--TVYPSANYIH 412
Query: 74 NEDGSVVRIS 83
+ +G++ +++
Sbjct: 413 HPNGTITKLA 422
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 24/44 (54%)
Query: 174 CTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLC 217
C TC + +C GH G+IEL PV N F V L+LK C C
Sbjct: 69 CETCHRKHPECPGHFGYIELAEPVFNIGVFDLVLLVLKCVCKTC 112
>sp|P17546|RPB1A_TRYBB DNA-directed RNA polymerase II subunit RPB1-A OS=Trypanosoma brucei
brucei GN=TRP4.8 PE=1 SV=1
Length = 1766
Score = 79.3 bits (194), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
Query: 499 KTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTL 558
K ++ L + L GK G +R N+MGKRV+F+ R+VIT DP +++D +GVP A TL
Sbjct: 323 KVNDTKKLKSLTERLKGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTL 382
Query: 559 TYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRIS 600
T+P V N L + VYP AN I + +G++ +++
Sbjct: 383 TFPERVNTVNKKRLTEFARR--TVYPSANYIHHPNGTITKLA 422
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP +++D +GVP A TLT+P V N L + VYP AN I
Sbjct: 355 FSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTVNKKRLTEFARR--TVYPSANYIH 412
Query: 74 NEDGSVVRIS 83
+ +G++ +++
Sbjct: 413 HPNGTITKLA 422
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 24/44 (54%)
Query: 174 CTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLC 217
C TC + +C GH G+IEL PV N F V L+LK C C
Sbjct: 69 CETCHRKHPECPGHFGYIELAEPVFNIGVFDLVLLVLKCVCKTC 112
>sp|Q6GZW7|RPB1_FRG3G Putative DNA-directed RNA polymerase 008R OS=Frog virus 3 (isolate
Goorha) GN=FV3-008R PE=3 SV=1
Length = 1293
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 63/109 (57%), Gaps = 5/109 (4%)
Query: 492 DAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVP 551
+ K + T + G+K+ + K G++RQN+MGKR N GRSV+ PD L +D +GVP
Sbjct: 261 NTKGKVMHATNRKPMAGIKERIGKKGGLLRQNIMGKRRNQTGRSVVGPDGTLEVDEVGVP 320
Query: 552 LEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRIS 600
A LT PV VTP+NV+ L M+ +G + ++ DG+V R S
Sbjct: 321 EAIADNLTVPVMVTPFNVSSLEAMMRDGR-----VSSVEMRDGTVHRPS 364
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 157 GGLYDLAMGPISERGDP--CTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSC 214
G +YD MG D C TC N +C GH GHIEL PV+ LF+++ LK C
Sbjct: 42 GSVYDPRMGSAGVDDDDALCPTCENTGRECPGHFGHIELAKPVV--LFYKETVAWLKRCC 99
Query: 215 FLCHKIN 221
+C +
Sbjct: 100 HVCGTVG 106
Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 17 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 76
RSV+ PD L +D +GVP A LT PV VTP+NV+ L M+ +G + ++ D
Sbjct: 303 RSVVGPDGTLEVDEVGVPEAIADNLTVPVMVTPFNVSSLEAMMRDGR-----VSSVEMRD 357
Query: 77 GSVVRIS 83
G+V R S
Sbjct: 358 GTVHRPS 364
>sp|A9NEL8|RPOC_ACHLI DNA-directed RNA polymerase subunit beta' OS=Acholeplasma laidlawii
(strain PG-8A) GN=rpoC PE=3 SV=1
Length = 1375
Score = 76.6 bits (187), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 118/474 (24%), Positives = 183/474 (38%), Gaps = 133/474 (28%)
Query: 124 LKLKYYTDQEVKQLSVVKVFSPITFN-SLGHTIPGGLYDLAM-GPISE------------ 169
K++ + E++ S +V + T N PGGL+D + GP +
Sbjct: 169 FKVRLASPDEIRNWSYGEVINHETINYRTSKPEPGGLFDERIFGPTRDYQCACGKKQTVN 228
Query: 170 RGDPCTTCGNNYTKCK---GHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATS 226
+G C CG T+ K +GHI L PV++T + ++ + S
Sbjct: 229 KGQICPKCGIEITESKVRRERMGHINLEAPVVHTWYLKN------------------SPS 270
Query: 227 QLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDI 286
+L + IK AK LEE +++ + P Q L + S + +
Sbjct: 271 RLAILLGIK---------AKQLEEVVYHASYIVTDPGQNTPLAKKQILSEQDYSLLV--- 318
Query: 287 NDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKD--NLDQSL 344
EE S F A + VK K+++ +DK+ NL + L
Sbjct: 319 ------EEYGSRFTALTGAEAVK------------------KLLQDLDLDKEVKNLRKRL 354
Query: 345 DKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMF 404
S + ++II++ + V+ + ++D K W + +IPV
Sbjct: 355 KTSSKQKRDRIIKRLD---VVEAFNQSDNKPEW-----MVMDVIPV-------------- 392
Query: 405 IRSLVVPPNNLRPLSMEQMPPVEHSR------NKLYQSILYSCGSLKSVIMAMKNKEQSD 458
+PP+ LRP M P++ R N LY+ IL LK K KEQ
Sbjct: 393 -----IPPD-LRP-----MVPLDGGRFATTDLNDLYRRILNRNNRLK------KQKEQM- 434
Query: 459 LLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTT--GAHQIDGLKQMLDGK 516
A + I +N LQ VD L D K + L +L GK
Sbjct: 435 ----APRLI--------TKNEKRMLQEAVDALFDNAKRGKKAAVERNRHLKSLSDLLRGK 482
Query: 517 TGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVT 570
G RQN++GKRV+++GRSVI P L + G+P E A TL P + +T
Sbjct: 483 QGRFRQNLLGKRVDYSGRSVIIVGPDLEMYQCGIPREMAITLFKPFILRELQLT 536
>sp|Q4A7B0|RPOC_MYCH7 DNA-directed RNA polymerase subunit beta' OS=Mycoplasma
hyopneumoniae (strain 7448) GN=rpoC PE=3 SV=1
Length = 1412
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 123/497 (24%), Positives = 198/497 (39%), Gaps = 109/497 (21%)
Query: 157 GGLYD-LAMGPISERGDPCTTCGNNYTK------------CK-------------GHIGH 190
GGL+D L GP+ + C+ CG Y K CK +GH
Sbjct: 54 GGLFDELIFGPLVDY--KCSVCGRKYRKSNENQLCIATKECKIRGSRILSKMARRYSMGH 111
Query: 191 IELPVPVINTLFFR-DVQLLLKLSCFLCHKIN--IPATSQLLFINQIKLLDAGYVTQAKD 247
I L P+++ FF+ D ++ KL + N +P T I + + V +
Sbjct: 112 IALNAPILHFWFFKIDHSIIAKLLGLKVFEGNSKVPTTITKTAIENLIYYKSHIVLETGG 171
Query: 248 LEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRH 307
L+ E+N +++D ++ I I Y G E +A +A+ +S
Sbjct: 172 LKSL---EQN---------KIIDISEAGLIYKNALIEIIEFYPPGSEEHNA-LAESISEL 218
Query: 308 VKRKCIFCATPINAISYQQRKIIKSF---KIDKDNLDQSLDKSLNKSSNQIIRKREQGYV 364
Y+ +II+ F +I L +++ L+K I R +
Sbjct: 219 ADVTSSKIGREYGVDYYELNEIIEEFSSARIATGAL--AIEYLLDK-----IDLRAEKAA 271
Query: 365 MASEVEADFKKLWTNEHLFLKC-----LIPVLDTTKELIAT----DIMFIRSLVVPPNNL 415
+ +E+ K+++ N+ + LK L L I + +M IR+L V P +L
Sbjct: 272 VEAELAGVQKQIYKNKKIILKNQKRDKLYKRLQVINAFINSGQDPKMMIIRNLPVIPADL 331
Query: 416 RPLSMEQMPPVEHSR---NKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTL 472
RPL Q+ HS N+LY+ I+ LK K +
Sbjct: 332 RPLV--QLDGSRHSTSDCNELYRRIIIRNNRLKR-----------------WKAAHAPVI 372
Query: 473 NNKLQNSWHELQYNVDLLMD-AKLNINKTTG--AHQIDGLKQMLDGKTGMIRQNMMGKRV 529
+QN LQ VD L+D K + N+ T + + L GK G RQN++GKRV
Sbjct: 373 --IIQNEMRMLQEAVDALIDNQKKSTNQVTTKEGRPLKSISDALTGKKGRFRQNLLGKRV 430
Query: 530 NFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPW------------NVTLLRKMV- 576
+++GRSVI P L + G+P + A L PW ++ + RKM+
Sbjct: 431 DYSGRSVIVVGPKLKMHQAGLPRKMAAVL-----FEPWIIRNLIQEKKVGSIKMARKMIE 485
Query: 577 INGPNVYPG-ANMIQNE 592
P ++P A +IQN+
Sbjct: 486 EENPIIWPHVAKVIQNK 502
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 223,960,558
Number of Sequences: 539616
Number of extensions: 9343412
Number of successful extensions: 26415
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 23940
Number of HSP's gapped (non-prelim): 2422
length of query: 621
length of database: 191,569,459
effective HSP length: 124
effective length of query: 497
effective length of database: 124,657,075
effective search space: 61954566275
effective search space used: 61954566275
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)