Your job contains 1 sequence.
>psy16766
MVYPSVNFNHAHVFPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVI
NGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKIITRQEVV
PEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNN
YTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAG
YVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFV
AQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKRE
QGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSM
EQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSW
HELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPD
PYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRIS
SSQAVQRESLAKRLITPEGNY
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy16766
(621 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0019938 - symbol:RpI1 "RNA polymerase I subunit" s... 797 4.3e-78 1
ZFIN|ZDB-GENE-030131-5286 - symbol:polr1a "polymerase (RN... 397 9.4e-63 2
UNIPROTKB|E2R0G4 - symbol:POLR1A "DNA-directed RNA polyme... 400 2.4e-62 2
UNIPROTKB|F1SVC3 - symbol:POLR1A "DNA-directed RNA polyme... 400 1.2e-61 2
CGD|CAL0001661 - symbol:RPA190 species:5476 "Candida albi... 427 3.9e-59 3
SGD|S000005868 - symbol:RPA190 "RNA polymerase I largest ... 417 1.3e-56 2
POMBASE|SPBC4C3.05c - symbol:nuc1 "DNA-directed RNA polym... 399 1.2e-55 2
UNIPROTKB|G4NBX7 - symbol:MGG_01158 "DNA-directed RNA pol... 407 5.2e-51 2
WB|WBGene00012999 - symbol:rpoa-1 species:6239 "Caenorhab... 361 3.9e-49 2
TAIR|locus:2076661 - symbol:NRPA1 "nuclear RNA polymerase... 310 6.6e-49 3
DICTYBASE|DDB_G0275759 - symbol:rpa1 "RNA polymerase I, l... 308 2.8e-44 2
UNIPROTKB|J9P5G4 - symbol:POLR1A "DNA-directed RNA polyme... 455 5.9e-41 1
UNIPROTKB|B9ZVN9 - symbol:POLR1A "DNA-directed RNA polyme... 447 1.5e-39 1
UNIPROTKB|O95602 - symbol:POLR1A "DNA-directed RNA polyme... 447 1.6e-39 1
MGI|MGI:1096397 - symbol:Polr1a "polymerase (RNA) I polyp... 443 5.6e-39 1
UNIPROTKB|F1LQN7 - symbol:Polr1a "DNA-directed RNA polyme... 438 2.0e-38 2
RGD|620824 - symbol:Polr1a "polymerase (RNA) I polypeptid... 438 1.5e-37 2
UNIPROTKB|G3V7B7 - symbol:Polr1a "DNA-directed RNA polyme... 438 1.5e-37 2
UNIPROTKB|E1BIX2 - symbol:POLR1A "DNA-directed RNA polyme... 432 1.5e-37 1
DICTYBASE|DDB_G0279193 - symbol:rpb1 "RNA polymerase II c... 249 7.3e-29 2
UNIPROTKB|G4MT89 - symbol:MGG_04652 "DNA-directed RNA pol... 251 1.5e-28 2
ASPGD|ASPL0000054301 - symbol:AN0809 species:162425 "Emer... 257 2.9e-28 2
ZFIN|ZDB-GENE-041008-78 - symbol:polr2a "polymerase (RNA)... 242 1.5e-27 2
WB|WBGene00000123 - symbol:ama-1 species:6239 "Caenorhabd... 241 2.2e-27 2
UNIPROTKB|P16356 - symbol:ama-1 "DNA-directed RNA polymer... 241 2.2e-27 2
POMBASE|SPBC28F2.12 - symbol:rpb1 "RNA polymerase II larg... 238 2.5e-27 2
UNIPROTKB|Q6NX41 - symbol:POLR2A "DNA-directed RNA polyme... 234 3.0e-27 2
CGD|CAL0002215 - symbol:orf19.3103 species:5476 "Candida ... 256 4.2e-27 2
ZFIN|ZDB-GENE-050208-103 - symbol:polr3a "polymerase (RNA... 250 5.2e-27 2
CGD|CAL0000919 - symbol:RPO21 species:5476 "Candida albic... 243 6.0e-27 2
UNIPROTKB|Q5ACI7 - symbol:RPO21 "DNA-directed RNA polymer... 243 6.0e-27 2
FB|FBgn0030687 - symbol:CG17209 species:7227 "Drosophila ... 247 6.7e-27 2
UNIPROTKB|F1NIK7 - symbol:POLR3A "DNA-directed RNA polyme... 247 7.7e-27 3
UNIPROTKB|Q5ZL98 - symbol:POLR3A "DNA-directed RNA polyme... 247 7.7e-27 3
UNIPROTKB|F1S2E6 - symbol:POLR3A "DNA-directed RNA polyme... 252 1.4e-26 3
UNIPROTKB|I3LJR4 - symbol:POLR2A "DNA-directed RNA polyme... 234 2.3e-26 2
UNIPROTKB|E2QXD8 - symbol:POLR3A "DNA-directed RNA polyme... 247 5.0e-26 3
UNIPROTKB|J9P629 - symbol:POLR3A "DNA-directed RNA polyme... 247 5.2e-26 3
UNIPROTKB|A4IF62 - symbol:POLR3A "DNA-directed RNA polyme... 247 5.2e-26 3
UNIPROTKB|O14802 - symbol:POLR3A "DNA-directed RNA polyme... 247 6.6e-26 3
UNIPROTKB|E9PTB6 - symbol:Polr3a "DNA-directed RNA polyme... 247 7.3e-26 3
UNIPROTKB|J9NW09 - symbol:POLR2A "DNA-directed RNA polyme... 234 1.0e-25 2
UNIPROTKB|F1PGS0 - symbol:POLR2A "DNA-directed RNA polyme... 234 1.3e-25 2
UNIPROTKB|G3MZY8 - symbol:POLR2A "DNA-directed RNA polyme... 234 1.3e-25 2
UNIPROTKB|P24928 - symbol:POLR2A "DNA-directed RNA polyme... 234 1.3e-25 2
MGI|MGI:98086 - symbol:Polr2a "polymerase (RNA) II (DNA d... 234 1.3e-25 2
RGD|1587326 - symbol:Polr2a "polymerase (RNA) II (DNA dir... 234 1.3e-25 2
SGD|S000002299 - symbol:RPO21 "RNA polymerase II largest ... 240 2.3e-25 2
SGD|S000005642 - symbol:RPO31 "RNA polymerase III largest... 254 3.3e-25 2
DICTYBASE|DDB_G0277199 - symbol:rpc1 "RNA polymerase III,... 253 7.5e-25 3
FB|FBgn0003277 - symbol:RpII215 "RNA polymerase II 215kD ... 240 9.4e-25 2
WB|WBGene00004411 - symbol:rpc-1 species:6239 "Caenorhabd... 247 1.8e-24 2
ASPGD|ASPL0000047704 - symbol:AN10316 species:162425 "Eme... 218 2.6e-24 2
POMBASE|SPBC651.08c - symbol:rpc1 "DNA-directed RNA polym... 237 4.0e-22 2
GENEDB_PFALCIPARUM|PF13_0150 - symbol:PF13_0150 "DNA-dire... 206 2.2e-19 2
UNIPROTKB|Q8IE49 - symbol:PF13_0150 "DNA-directed RNA pol... 206 2.2e-19 2
UNIPROTKB|E1C7P0 - symbol:Gga.54058 "DNA-directed RNA pol... 189 7.6e-14 1
UNIPROTKB|Q9KV29 - symbol:rpoC "DNA-directed RNA polymera... 162 3.9e-09 2
TIGR_CMR|VC_0329 - symbol:VC_0329 "DNA-directed RNA polym... 162 3.9e-09 2
TIGR_CMR|CHY_2317 - symbol:CHY_2317 "DNA-directed RNA pol... 142 6.4e-08 2
UNIPROTKB|P37871 - symbol:rpoC "DNA-directed RNA polymera... 147 6.7e-08 2
UNIPROTKB|P0A8T7 - symbol:rpoC "RNA polymerase, beta' sub... 154 9.2e-08 2
TIGR_CMR|CPS_4768 - symbol:CPS_4768 "DNA-directed RNA pol... 148 1.2e-07 2
TIGR_CMR|SO_0225 - symbol:SO_0225 "DNA-directed RNA polym... 148 1.5e-07 2
TIGR_CMR|BA_0103 - symbol:BA_0103 "DNA-directed RNA polym... 143 1.8e-07 2
TIGR_CMR|SPO_3507 - symbol:SPO_3507 "DNA-directed RNA pol... 150 2.5e-07 2
TIGR_CMR|NSE_0677 - symbol:NSE_0677 "DNA-directed RNA pol... 148 3.1e-07 3
TAIR|locus:2061151 - symbol:NRPD1B "nuclear RNA polymeras... 113 5.8e-07 3
TIGR_CMR|ECH_0951 - symbol:ECH_0951 "DNA-directed RNA pol... 141 8.6e-07 2
TIGR_CMR|CBU_0232 - symbol:CBU_0232 "DNA-directed RNA pol... 140 8.8e-07 2
TIGR_CMR|APH_1023 - symbol:APH_1023 "DNA-directed RNA pol... 138 8.8e-07 2
TIGR_CMR|DET_0604 - symbol:DET_0604 "DNA-directed RNA pol... 141 1.4e-06 2
TIGR_CMR|CJE_0529 - symbol:CJE_0529 "DNA-directed RNA pol... 154 1.6e-06 3
UNIPROTKB|P0A674 - symbol:rpoC "DNA-directed RNA polymera... 149 1.7e-06 1
UNIPROTKB|P0C504 - symbol:rpoC1 "DNA-directed RNA polymer... 132 5.1e-05 1
UNIPROTKB|P0C505 - symbol:rpoC1 "DNA-directed RNA polymer... 132 5.1e-05 1
UNIPROTKB|P0C506 - symbol:rpoC1 "DNA-directed RNA polymer... 132 5.1e-05 1
UNIPROTKB|Q6ENI3 - symbol:rpoC1 "DNA-directed RNA polymer... 132 5.1e-05 1
>FB|FBgn0019938 [details] [associations]
symbol:RpI1 "RNA polymerase I subunit" species:7227
"Drosophila melanogaster" [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=ISS;NAS] [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=ISS] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 EMBL:AE013599 GO:GO:0005730 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K02999
PANTHER:PTHR19376:SF11 EMBL:Y09103 EMBL:AY121632 PIR:T13803
RefSeq:NP_523743.1 UniGene:Dm.8031 ProteinModelPortal:P91875
SMR:P91875 MINT:MINT-1742038 STRING:P91875 PaxDb:P91875
GeneID:36617 KEGG:dme:Dmel_CG10122 CTD:36617 FlyBase:FBgn0019938
InParanoid:P91875 OrthoDB:EOG466T1R GenomeRNAi:36617 NextBio:799515
Bgee:P91875 GermOnline:CG10122 Uniprot:P91875
Length = 1642
Score = 797 (285.6 bits), Expect = 4.3e-78, P = 4.3e-78
Identities = 187/511 (36%), Positives = 290/511 (56%)
Query: 121 PEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNN 180
P L+ +TDQE+++LSVVKV + ITF++LGH IPGGLYD+ MG DPC TC
Sbjct: 13 PSDLEFAVFTDQEIRKLSVVKVITGITFDALGHAIPGGLYDIRMGSYGRCMDPCGTC-LK 71
Query: 181 YTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAG 240
C GH+GHIEL PV N F + VQ LL + C C+K+ + + + Q++L+DAG
Sbjct: 72 LQDCPGHMGHIELGTPVYNPFFIKFVQRLLCIFCLHCYKLQMKDHECEIIMLQLRLIDAG 131
Query: 241 YVTQAKDLEETLFNEENLRLHPAQLV-----QLVDSHVQSI--LAHGTKICDINDYKGGE 293
Y+ +A++LE LF E + + LV +V H+ ++ L + N K
Sbjct: 132 YIIEAQELE--LFKSEIVCQNTENLVAIKNGDMVHPHIAAMYKLLEKNEKNSSNSTKTSC 189
Query: 294 ELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSN 353
LR+A L R + +KC C + + Y R+++ F + ++ + +
Sbjct: 190 SLRTAITHSALQR-LGKKCRHCNKSMRFVRYMHRRLV--FYVTLADIKERVGTGAETGGQ 246
Query: 354 QIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVL-----DTTK-ELIATDIMFIRS 407
+ + A E ++++ N LK L+PVL D T+ + D+ F+ +
Sbjct: 247 NKV-------IFADECRRYLRQIYANYPELLKLLVPVLGLSNTDLTQGDRSPVDLFFMDT 299
Query: 408 LVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQ--SDLLSEALK 465
L V P RPL+M + + +Y +I+ + L V+ MK ++ ++ A +
Sbjct: 300 LPVTPPRARPLNMVGDMLKGNPQTDIYINIIENNHVLNVVLKYMKGGQEKLTEEAKAAYQ 359
Query: 466 GIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMM 525
++G+T + KL +W LQ +VD+L+D ++ +G +GLKQ+++ K+G+IR +MM
Sbjct: 360 TLKGETAHEKLYTAWLALQMSVDVLLDVNMSREMKSG----EGLKQIIEKKSGLIRSHMM 415
Query: 526 GKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPG 585
GKRVN+A R+VITPDP +N+D IG+P FAK L+YPVPVT WNVT LRKMV+NGP+V+PG
Sbjct: 416 GKRVNYAARTVITPDPNINVDEIGIPDIFAKKLSYPVPVTEWNVTELRKMVMNGPDVHPG 475
Query: 586 ANMIQNEDGSVVRISSSQAVQRESLAKRLIT 616
AN IQ+++G I + A +RESLAK L++
Sbjct: 476 ANYIQDKNGFTTYIPADNASKRESLAKLLLS 506
Score = 273 (101.2 bits), Expect = 8.3e-20, P = 8.3e-20
Identities = 55/102 (53%), Positives = 75/102 (73%)
Query: 17 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 76
R+VITPDP +N+D IG+P FAK L+YPVPVT WNVT LRKMV+NGP+V+PGAN IQ+++
Sbjct: 424 RTVITPDPNINVDEIGIPDIFAKKLSYPVPVTEWNVTELRKMVMNGPDVHPGANYIQDKN 483
Query: 77 GSVVRISSSQAVQRESLAKRLIT-PEDQ---QHRAIMKEKII 114
G I + A +RESLAK L++ P+D HR ++ ++
Sbjct: 484 GFTTYIPADNASKRESLAKLLLSNPKDGIKIVHRHVLNGDVL 525
>ZFIN|ZDB-GENE-030131-5286 [details] [associations]
symbol:polr1a "polymerase (RNA) I polypeptide A"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 ZFIN:ZDB-GENE-030131-5286
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861 EMBL:AL929267
EMBL:CU694378 IPI:IPI00934858 Ensembl:ENSDART00000114501
ArrayExpress:E7F710 Bgee:E7F710 Uniprot:E7F710
Length = 1710
Score = 397 (144.8 bits), Expect = 9.4e-63, Sum P(2) = 9.4e-63
Identities = 96/248 (38%), Positives = 149/248 (60%)
Query: 391 LDTTKELIATDIMFIRSLVVPPNNLRPLSM--EQMPPVEHSRNKLYQSILYS---CGSLK 445
+D + ++ F+ LVVPP RP++ +QM + + Q++L L
Sbjct: 289 MDNSDNGFNPEVFFLELLVVPPCRYRPINRLGDQM--FTNGQTVNMQAVLKDGLIIQKLL 346
Query: 446 SVIMAMKNKE----QSDL--LSEA----------LKGIRGDTLNNKLQNSWHELQYNVDL 489
++I K K Q++L SEA L I+G TL +KL ++W LQ V++
Sbjct: 347 TLIADEKTKAIEGTQTELEQSSEAPKVTEIDQSFLTSIQGVTLTDKLYSTWIHLQSLVNI 406
Query: 490 LMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIG 549
+ D+ +++K + G++Q+L+ K G+ R++MMGKRV++A RSVI PD Y+ + IG
Sbjct: 407 VFDS--DMDKLI-TEKFPGVRQLLEKKEGLFRKHMMGKRVDYAARSVICPDMYIGTNEIG 463
Query: 550 VPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRES 609
+P+ FA LTYP PVTPWNV +R+ V+NGPN++PGA M+ NEDGS +SS+ QRE+
Sbjct: 464 IPMVFATKLTYPQPVTPWNVKEMRQAVLNGPNIHPGATMVVNEDGSRTILSSTNQTQREA 523
Query: 610 LAKRLITP 617
+AK+L+TP
Sbjct: 524 VAKQLLTP 531
Score = 327 (120.2 bits), Expect = 9.4e-63, Sum P(2) = 9.4e-63
Identities = 89/301 (29%), Positives = 147/301 (48%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
++ E ++LSV + +P +++G+ GLYDLA+GP + + C+TC +++ C GH
Sbjct: 20 FSADETRKLSVKTITNPQLLDNVGNAAANGLYDLALGPADNK-EICSTCMQDFSSCPGHF 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELP+PV N LFF + LL++ SC CH + P + L + Q+KLLD G + + ++
Sbjct: 79 GHIELPLPVYNPLFFDKLYLLIRGSCLSCHILKCPRAAIHLLLCQLKLLDVGAMKEVFEI 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSR 306
E L F E N ++ + ++ V+ IL + K E +S+ +
Sbjct: 139 ENVLNQFLESNPSPPGEEIQETLNDFVKPILETRKDKQHTDPVKHICEKKSSLITSFWRI 198
Query: 307 HV-KRKCIFC-ATPINAISYQQRKIIKSFKIDKDNLDQ----SLDKSLNKSSNQIIRKRE 360
H+ +KC C A + K+I + + K +Q SL+ S + + KR
Sbjct: 199 HMGPKKCQNCKANRMTVRKEHNSKLIVTQTLHKKASEQDDTLSLEGLTLLSDDSQLTKRI 258
Query: 361 QGYVMASEVEADFKKLWTNEHLFLKCLIPV--LDTTKELIATDIMFIRSLVVPPNNLRPL 418
++ S KLW E FLK L +D + ++ F+ LVVPP RP+
Sbjct: 259 --FLTPSVAREHIIKLWETEGFFLKHLFSGFDMDNSDNGFNPEVFFLELLVVPPCRYRPI 316
Query: 419 S 419
+
Sbjct: 317 N 317
Score = 290 (107.1 bits), Expect = 1.2e-21, P = 1.2e-21
Identities = 57/110 (51%), Positives = 76/110 (69%)
Query: 17 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 76
RSVI PD Y+ + IG+P+ FA LTYP PVTPWNV +R+ V+NGPN++PGA M+ NED
Sbjct: 448 RSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKEMRQAVLNGPNIHPGATMVVNED 507
Query: 77 GSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKIITRQEVVPEILKL 126
GS +SS+ QRE++AK+L+TP QHR MK I+ R ++L L
Sbjct: 508 GSRTILSSTNQTQREAVAKQLLTPSTGQHRIPMK--IVNRHIKNGDVLLL 555
>UNIPROTKB|E2R0G4 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 OMA:CLLNETT PANTHER:PTHR19376:SF11
GeneTree:ENSGT00550000074861 EMBL:AAEX03010931
Ensembl:ENSCAFT00000012228 Uniprot:E2R0G4
Length = 1746
Score = 400 (145.9 bits), Expect = 2.4e-62, Sum P(2) = 2.4e-62
Identities = 91/235 (38%), Positives = 144/235 (61%)
Query: 402 IMFIRSLVVPPNNLRPLSM--EQMPPVEHSRNKLYQSILYSCGSLKSVIMAM-------- 451
+ F+ LVVPP+ RP++ +QM + + Q+++ ++ ++ M
Sbjct: 308 VFFLDFLVVPPSRYRPVNRLGDQM--FTNGQTVNLQAVMKDMVLIRKLLALMAQEQELPC 365
Query: 452 --------KNKEQSDLLSEA-LKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTG 502
+ K+ S L + L + G +L +KL N W LQ +V+++ D++++ K
Sbjct: 366 EVSGPAKDEEKDSSIALDRSFLSMLPGQSLTDKLYNIWIRLQSHVNIVFDSEMD--KLM- 422
Query: 503 AHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPV 562
+ G++Q+L+ K G+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP
Sbjct: 423 MEKYPGIRQILEKKDGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQ 482
Query: 563 PVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
PVTPWNV LR+ VINGPNV+PGA+M+ NEDGS +S+ QRE++AK+L+TP
Sbjct: 483 PVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAIDLTQREAVAKQLLTP 537
Score = 320 (117.7 bits), Expect = 2.4e-62, Sum P(2) = 2.4e-62
Identities = 91/312 (29%), Positives = 151/312 (48%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P +SLG+ GLYDLA+GP + + C+TC ++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSK-EVCSTCVQDFNNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELP+ V N L F + LLL+ SC CH + P L + Q+++L+ G + +L
Sbjct: 79 GHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLVCQLRVLEVGALQAVYEL 138
Query: 249 EETL--FNEEN-----LRLHPAQLVQLVDSHVQSILA--HGTKICDINDYKGGEELRSAF 299
E L F EEN ++ +L Q VQ+ L HG + + K + RS
Sbjct: 139 ERILNRFLEENADPTAFKIQE-ELEQYTAKIVQNNLLGPHGAHV----EVKNVCDSRSKL 193
Query: 300 VAQVLSRHVKRK-CIFCATPINAISYQQR-KIIKSF------KIDKDNLDQSLDKSLNKS 351
+A H+ K C C T + + + K+ ++ K D+ + + + + +K
Sbjct: 194 IAYFWKAHMTAKRCPHCKTGRSVVRKEHNSKLTVTYPAMVHKKADQKDTEPLEEAAGDKK 253
Query: 352 SNQIIRKREQGYVMASEVEADFKKLWTNEH--LFLKCLIPVLDTT--KELIATDIMFIRS 407
+ + ++GY+ + LW NE FL L L+ + + F+
Sbjct: 254 GIEETQLGKRGYLTPTSAREHLTALWKNEDTGFFLNYLFSGLEDVDMESRFNPSVFFLDF 313
Query: 408 LVVPPNNLRPLS 419
LVVPP+ RP++
Sbjct: 314 LVVPPSRYRPVN 325
Score = 275 (101.9 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 57/110 (51%), Positives = 74/110 (67%)
Query: 17 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 76
RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+ NED
Sbjct: 454 RSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINED 513
Query: 77 GSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKIITRQEVVPEILKL 126
GS +S+ QRE++AK+L+TP + KI+ R +IL L
Sbjct: 514 GSRTALSAIDLTQREAVAKQLLTPATGAPKP-QGTKIVCRHVKNGDILLL 562
Score = 38 (18.4 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 8/37 (21%), Positives = 20/37 (54%)
Query: 334 KIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVE 370
+++++N D+ + + + S N + +EQ + S E
Sbjct: 1462 EVEEENEDEDMQEEEHISGNSAHKAQEQNEEVGSGPE 1498
>UNIPROTKB|F1SVC3 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0005736 GO:GO:0003899
OMA:CLLNETT PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861
EMBL:CU570839 Ensembl:ENSSSCT00000009008 Uniprot:F1SVC3
Length = 1723
Score = 400 (145.9 bits), Expect = 1.2e-61, Sum P(2) = 1.2e-61
Identities = 90/235 (38%), Positives = 145/235 (61%)
Query: 402 IMFIRSLVVPPNNLRPLSM--EQMPPVEHSRNKLYQSILYSCGSLKSVIMAM-------- 451
+ F+ LVVPP+ RP++ +QM + + Q+++ ++ ++ M
Sbjct: 300 MFFLDFLVVPPSRYRPVNRLGDQM--FTNGQTVNLQAVMKDVVLIRKLLALMAQEQELPC 357
Query: 452 --------KNKEQSDLLSEA-LKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTG 502
+ K+ S + + L + G +L ++L N W LQ +V+++ D++++ K T
Sbjct: 358 EVAAPAPDEEKDSSTAMDRSFLSLLPGQSLTDRLYNIWIRLQSHVNIVFDSEMD--KLT- 414
Query: 503 AHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPV 562
+ G++Q+L+ K G+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP
Sbjct: 415 MEKYPGIRQILEKKDGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQ 474
Query: 563 PVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
PVTPWNV LR+ VINGP V+PGA+M+ NEDGS +S+S QRE++AK+L+TP
Sbjct: 475 PVTPWNVQELRQAVINGPTVHPGASMVINEDGSRTALSASDLTQREAVAKQLLTP 529
Score = 313 (115.2 bits), Expect = 1.2e-61, Sum P(2) = 1.2e-61
Identities = 83/299 (27%), Positives = 142/299 (47%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P +SLG+ GLYDLA+GP + + C+TC ++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPPDSK-EVCSTCVQDFNNCPGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELP+ V N L F + LLL+ SC CH + P L + Q+++L+ G + +L
Sbjct: 79 GHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYEL 138
Query: 249 EETLFN--EENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSR 306
E L+ EEN +++ + ++ + +I+ + + K E RS +A
Sbjct: 139 ERILYRFLEENPDPTASEIQEELEQYTATIVQNNLLGSHGSHVKNVCESRSKLIASFWKA 198
Query: 307 HVKRK-CIFCATPINAISYQQR-KIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYV 364
H+ K C C T + + + K+ ++ D + + ++GY+
Sbjct: 199 HMTAKRCPHCRTGRSVVRKEHNSKLTITYPAMVHRKADQKDAEPQAPGIEEAQMGKRGYL 258
Query: 365 MASEVEADFKKLWTNEH--LFLKCLIPVLDTT--KELIATDIMFIRSLVVPPNNLRPLS 419
+ LW NE FL L L+ + + F+ LVVPP+ RP++
Sbjct: 259 TPLSAQDHLIALWKNEDTGFFLNYLFLGLEDVGLESRFNPSMFFLDFLVVPPSRYRPVN 317
Score = 275 (101.9 bits), Expect = 5.4e-20, P = 5.4e-20
Identities = 57/110 (51%), Positives = 74/110 (67%)
Query: 17 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 76
RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGP V+PGA+M+ NED
Sbjct: 446 RSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPTVHPGASMVINED 505
Query: 77 GSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKIITRQEVVPEILKL 126
GS +S+S QRE++AK+L+TP + KI+ R +IL L
Sbjct: 506 GSRTALSASDLTQREAVAKQLLTPATGAPKP-QGTKIVCRHVKNGDILLL 554
>CGD|CAL0001661 [details] [associations]
symbol:RPA190 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0005736 "DNA-directed RNA polymerase I
complex" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0007000 "nucleolus organization" evidence=IEA]
[GO:0042790 "transcription of nuclear large rRNA transcript from
RNA polymerase I promoter" evidence=IEA] [GO:0034503 "protein
localization to nucleolar rDNA repeats" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 CGD:CAL0001661
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:AACQ01000244
EMBL:AACQ01000240 GO:GO:0003899 eggNOG:COG0086 KO:K02999
PANTHER:PTHR19376:SF11 RefSeq:XP_710723.1 RefSeq:XP_710761.1
ProteinModelPortal:Q59LW3 STRING:Q59LW3 GeneID:3647643
GeneID:3647677 KEGG:cal:CaO19.1839 KEGG:cal:CaO19.9397
Uniprot:Q59LW3
Length = 1665
Score = 427 (155.4 bits), Expect = 3.9e-59, Sum P(3) = 3.9e-59
Identities = 96/257 (37%), Positives = 153/257 (59%)
Query: 363 YVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQ 422
YV+++EV + L+ E L+ + + I+ D+ F +S++VPP R S
Sbjct: 299 YVLSTEVRNILRSLFHKEQAILQKVFHSRPYQHDPISGDLFFKQSVLVPPTRFRLPSKLG 358
Query: 423 MPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHE 482
E+++N+L +I+ + SV++ N+ +++ E + G + N+L N++
Sbjct: 359 DEIHENAQNELLSNIIKT-----SVLIRDLNERITNMYKEKISGEDKKIIFNRLMNAFVT 413
Query: 483 LQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPY 542
LQ +V+ +D+ N N G G+KQ L+ K G+ R++MMGKRVN+A RSVI+PDP
Sbjct: 414 LQNDVNAFIDSTKNQNAPAGKIPNPGIKQALEKKEGLFRKHMMGKRVNYAARSVISPDPN 473
Query: 543 LNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSS 602
L + IGVP FAK LTYP PVT +N + LR+ VINGP+ +PGA +QNEDGS++ +
Sbjct: 474 LETNEIGVPPVFAKKLTYPEPVTSYNASELRQAVINGPDTWPGAIQVQNEDGSLISLIGM 533
Query: 603 QAVQRESLAKRLITPEG 619
QR+++A +L+TP G
Sbjct: 534 TLEQRKAIANQLLTPNG 550
Score = 258 (95.9 bits), Expect = 3.9e-59, Sum P(3) = 3.9e-59
Identities = 47/123 (38%), Positives = 76/123 (61%)
Query: 130 TDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+D+E+++LS ++ +PI F++LGH I GGLYDL++G + CTTCG + C GH+G
Sbjct: 20 SDEEIRKLSAKQITNPIVFDNLGHPINGGLYDLSLGAFLR--NVCTTCGLDEKFCPGHLG 77
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLE 249
HIELPVPV N +FF + + L+ +C CHK + F ++ L+ G + + +L+
Sbjct: 78 HIELPVPVYNPMFFNQLYIFLRSACLYCHKFKLNQLEVHNFECKLHLIQYGLLLECVELD 137
Query: 250 ETL 252
+
Sbjct: 138 NIM 140
Score = 235 (87.8 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 45/84 (53%), Positives = 61/84 (72%)
Query: 17 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 76
RSVI+PDP L + IGVP FAK LTYP PVT +N + LR+ VINGP+ +PGA +QNED
Sbjct: 465 RSVISPDPNLETNEIGVPPVFAKKLTYPEPVTSYNASELRQAVINGPDTWPGAIQVQNED 524
Query: 77 GSVVRISSSQAVQRESLAKRLITP 100
GS++ + QR+++A +L+TP
Sbjct: 525 GSLISLIGMTLEQRKAIANQLLTP 548
Score = 40 (19.1 bits), Expect = 3.9e-59, Sum P(3) = 3.9e-59
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 337 KDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTN 379
+DN D+ S+++ S + + KR + +V + +E+ K TN
Sbjct: 155 EDNDDEEGGGSVDEKSKKDLMKRRELFVK-NAIESALKDGRTN 196
>SGD|S000005868 [details] [associations]
symbol:RPA190 "RNA polymerase I largest subunit A190"
species:4932 "Saccharomyces cerevisiae" [GO:0005634 "nucleus"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IDA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IMP;IDA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0042790 "transcription of nuclear large rRNA transcript from
RNA polymerase I promoter" evidence=IGI;IMP] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 SGD:S000005868 EMBL:BK006948 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:X95720 GO:GO:0005736 GO:GO:0003899 GO:GO:0042790
eggNOG:COG0086 KO:K02999 OMA:CLLNETT PANTHER:PTHR19376:SF11
HOGENOM:HOG000205401 GeneTree:ENSGT00550000074861 OrthoDB:EOG432464
EMBL:J03530 EMBL:Z75249 PIR:S67250 RefSeq:NP_014986.3
RefSeq:NP_620389.3 ProteinModelPortal:P10964 SMR:P10964
DIP:DIP-999N IntAct:P10964 MINT:MINT-613626 STRING:P10964
PaxDb:P10964 PeptideAtlas:P10964 EnsemblFungi:YOR341W GeneID:854519
GeneID:854523 KEGG:sce:YOR341W KEGG:sce:YOR343W-B CYGD:YOR341w
NextBio:976888 Genevestigator:P10964 GermOnline:YOR341W
Uniprot:P10964
Length = 1664
Score = 417 (151.9 bits), Expect = 1.3e-56, Sum P(2) = 1.3e-56
Identities = 104/290 (35%), Positives = 167/290 (57%)
Query: 334 KIDKDNLDQSLDK-SLNKSSNQIIR-KREQGYVMASEVEADFKKLWTNEHLFLKCLIPVL 391
K+D N + D+ S + N R K Y++++EV+ ++ E L+ +
Sbjct: 283 KLDGSNEASANDEESFDVGRNPTTRPKTGSTYILSTEVKNILDTVFRKEQCVLQYVFHSR 342
Query: 392 -DTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMA 450
+ +++L+ D F+ LVVPP R S E+S+N+L +L + ++ +
Sbjct: 343 PNLSRKLVKADSFFMDVLVVPPTRFRLPSKLGEEVHENSQNQLLSKVLTTSLLIRDLNDD 402
Query: 451 MKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLK 510
+ +K Q D +S L+ R + ++L N++ +Q +V+ +D+ +T+G I G+K
Sbjct: 403 L-SKLQKDKVS--LEDRR--VIFSRLMNAFVTIQNDVNAFIDSTKAQGRTSGKVPIPGVK 457
Query: 511 QMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVT 570
Q L+ K G+ R++MMGKRVN+A RSVI+PDP + + IGVP FA LTYP PVT +N+
Sbjct: 458 QALEKKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFAVKLTYPEPVTAYNIA 517
Query: 571 LLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPEGN 620
LR+ VINGP+ +PGA IQNEDGS+V + QR++LA +L+TP N
Sbjct: 518 ELRQAVINGPDKWPGATQIQNEDGSLVSLIGMSVEQRKALANQLLTPSSN 567
Score = 245 (91.3 bits), Expect = 1.3e-56, Sum P(2) = 1.3e-56
Identities = 64/213 (30%), Positives = 109/213 (51%)
Query: 130 TDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
T +E++ LS ++ +P ++LGH + GGLYDLA+G + C+TCG + C GH G
Sbjct: 20 TAKEIRNLSAKQITNPTVLDNLGHPVSGGLYDLALGAFLR--NLCSTCGLDEKFCPGHQG 77
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLE 249
HIELPVP N LFF + + L+ SC CH + + + +++LL G + ++ L+
Sbjct: 78 HIELPVPCYNPLFFNQLYIYLRASCLFCHHFRLKSVEVHRYACKLRLLQYGLIDESYKLD 137
Query: 250 ETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKIC-DINDYKGGE--ELRSAFV----AQ 302
E N ++ + ++ + + G+K DI+ E RS +V A+
Sbjct: 138 EITLGSLNSSMYTDD--EAIEDNEDEMDGEGSKQSKDISSTLLNELKSKRSEYVDMAIAK 195
Query: 303 VLS--RHVKRKCIFCATPINAISYQQRKIIKSF 333
LS R +R F AT ++ +++K++ F
Sbjct: 196 ALSDGRTTERGS-FTAT----VNDERKKLVHEF 223
Score = 240 (89.5 bits), Expect = 3.2e-16, P = 3.2e-16
Identities = 50/107 (46%), Positives = 69/107 (64%)
Query: 17 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 76
RSVI+PDP + + IGVP FA LTYP PVT +N+ LR+ VINGP+ +PGA IQNED
Sbjct: 481 RSVISPDPNIETNEIGVPPVFAVKLTYPEPVTAYNIAELRQAVINGPDKWPGATQIQNED 540
Query: 77 GSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI---ITRQEVV 120
GS+V + QR++LA +L+TP + +K+ I ++VV
Sbjct: 541 GSLVSLIGMSVEQRKALANQLLTPSSNVSTHTLNKKVYRHIKNRDVV 587
>POMBASE|SPBC4C3.05c [details] [associations]
symbol:nuc1 "DNA-directed RNA polymerase I complex large
subunit Nuc1" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IGI] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IGI] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006360 "transcription from RNA polymerase I
promoter" evidence=ISO] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0007000 "nucleolus organization" evidence=IMP]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0034503 "protein
localization to nucleolar rDNA repeats" evidence=IMP]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 PomBase:SPBC4C3.05c
GO:GO:0005829 GO:GO:0046872 GO:GO:0003677 EMBL:CU329671
GO:GO:0008270 GenomeReviews:CU329671_GR GO:GO:0006406
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0034503 GO:GO:0006360
GO:GO:0007000 GO:GO:0005736 GO:GO:0003899 eggNOG:COG0086 KO:K02999
OMA:CLLNETT PANTHER:PTHR19376:SF11 HOGENOM:HOG000205401 EMBL:X14783
EMBL:M37411 PIR:JS0080 RefSeq:NP_596300.1 ProteinModelPortal:P15398
STRING:P15398 EnsemblFungi:SPBC4C3.05c.1 GeneID:2540873
KEGG:spo:SPBC4C3.05c OrthoDB:EOG432464 NextBio:20801989
Uniprot:P15398
Length = 1689
Score = 399 (145.5 bits), Expect = 1.2e-55, Sum P(2) = 1.2e-55
Identities = 97/275 (35%), Positives = 161/275 (58%)
Query: 349 NKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSL 408
NKS + I + Y+ ++EV ++L+ E++ L L + + D+ F++++
Sbjct: 310 NKSKSPIAHGAK--YMTSTEVRNHLRRLFVKENVVLSRLYA--HKRGKPASADMFFLQNI 365
Query: 409 VVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQS-DLLSEALKGI 467
VPP RP S E+ +N+L IL S S+ +A +K+ + ++ + +G+
Sbjct: 366 AVPPTRFRPASKMGDEVHENIQNELLTRILQS-----SIQIASLSKDSTVEVNPDEKEGL 420
Query: 468 -RGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQID-GLKQMLDGKTGMIRQNMM 525
R L N++ +LQ++V+ L+D+ N + + + G+KQ+L+ K G+ R++MM
Sbjct: 421 ERRSRAFELLINAFVQLQHDVNSLIDSNRNPSSGGQSRTVPPGIKQILEKKEGLFRKHMM 480
Query: 526 GKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPG 585
GKRVN+A RSVI+PDP + + IGVP FA LTYP PVT +N +R VINGP+ +PG
Sbjct: 481 GKRVNYAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTLYNFNEMRNAVINGPHKWPG 540
Query: 586 ANMIQNEDGSVVRISSSQAVQRESLAKRLITPEGN 620
A+ IQNEDG+++ + QR +LA +L+TP+ N
Sbjct: 541 ASHIQNEDGTLISLMPLTIEQRTALANQLLTPQSN 575
Score = 257 (95.5 bits), Expect = 1.2e-55, Sum P(2) = 1.2e-55
Identities = 82/285 (28%), Positives = 136/285 (47%)
Query: 117 QEVVPEILKLKY--YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPC 174
Q V EI +K+ Y +V+++SV ++ +P+ ++L H GGLYDLA+GP + C
Sbjct: 5 QPVSSEIKSVKFGIYDVDDVEKISVKQIVNPVLLDNLNHPTNGGLYDLALGPYL-KNSVC 63
Query: 175 TTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQI 234
TC + C GH GHI LP+P + LFF + LL+ +C CH + LF ++
Sbjct: 64 ATCHLDERYCPGHFGHIVLPIPAYHPLFFSQMYNLLRSTCLYCHHFKLSKVKVHLFFCRL 123
Query: 235 KLLDAGYVTQAKDLEETLFNEENLR-LHPAQLVQLVDSHVQSILAHGTKICDI-NDYKGG 292
KLLD G + +++ +E E ++ + L DS S L H DI D
Sbjct: 124 KLLDYGLLNESEMVENVSLTEAIIKNSNGTPLEDGSDSE-DSGLGHD----DIAKDAATL 178
Query: 293 EELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSS 352
+R FVA+ ++ ++ A + ++++K++++F + Q D + S
Sbjct: 179 MRIRDEFVAKSIADS-RQNAHIDAQLTTLLLHERKKVVRAFYHAISSRKQC-DNCQSFSP 236
Query: 353 NQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVL-DTTKE 396
N R++G+ E+ K L E K VL DT+K+
Sbjct: 237 NF----RKEGFAKIFEIPLSGKNLQFMEQTG-KIRSDVLRDTSKK 276
Score = 219 (82.2 bits), Expect = 4.5e-12, Sum P(3) = 4.5e-12
Identities = 43/85 (50%), Positives = 59/85 (69%)
Query: 17 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 76
RSVI+PDP + + IGVP FA LTYP PVT +N +R VINGP+ +PGA+ IQNED
Sbjct: 489 RSVISPDPNIETNEIGVPPVFATKLTYPEPVTLYNFNEMRNAVINGPHKWPGASHIQNED 548
Query: 77 GSVVRISSSQAVQRESLAKRLITPE 101
G+++ + QR +LA +L+TP+
Sbjct: 549 GTLISLMPLTIEQRTALANQLLTPQ 573
Score = 41 (19.5 bits), Expect = 6.4e-17, Sum P(2) = 6.4e-17
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 432 KLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALK 465
K Y+S++ +KSV+ A+ ++ S +ALK
Sbjct: 1084 KNYKSLIQKY-KVKSVLSAVDSETASSYAKKALK 1116
Score = 39 (18.8 bits), Expect = 4.5e-12, Sum P(3) = 4.5e-12
Identities = 12/55 (21%), Positives = 27/55 (49%)
Query: 296 RSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNK 350
RS ++ + L +H++ C+ + + I++ F +D+LD + K L +
Sbjct: 1028 RSGYLQRCLMKHLEGLCVQYD---HTVRDSDGSIVQ-FHYGEDSLDVTKQKHLTQ 1078
>UNIPROTKB|G4NBX7 [details] [associations]
symbol:MGG_01158 "DNA-directed RNA polymerase"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
EMBL:CM001235 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0043581 GO:GO:0003899
KO:K02999 PANTHER:PTHR19376:SF11 RefSeq:XP_003717763.1
ProteinModelPortal:G4NBX7 EnsemblFungi:MGG_01158T0 GeneID:2675173
KEGG:mgr:MGG_01158 Uniprot:G4NBX7
Length = 1719
Score = 407 (148.3 bits), Expect = 5.2e-51, Sum P(2) = 5.2e-51
Identities = 108/296 (36%), Positives = 163/296 (55%)
Query: 335 IDKDNLDQS-----LDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNEHLFLKCLI- 388
+D D+LD+ L KS K S +R Y+ A EV L+ E L
Sbjct: 299 VDGDDLDEQGNVVKLPKSKPKKSGAAPSQR---YLSAREVLERLDLLFEKEQEVLSLFYN 355
Query: 389 --PVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPV-EHSRNKLYQSILYSCGSLK 445
P +TK + A + F+++L+VPPN RP + + E +N LY++IL + L
Sbjct: 356 SKPSHKSTKHINA-GLFFVQTLLVPPNRFRPEARTGDSQINEAQQNSLYKAILKASTKLT 414
Query: 446 SVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQ 505
+ ++N + LLS+ G + T+ L +W ELQ V+ L+D + + A
Sbjct: 415 QIFRDLQNP--TSLLSQR-HG-KDTTI---LHEAWTELQDCVNTLIDNTKSPTQGAAAKA 467
Query: 506 ID-GLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPV 564
++ G+KQ L+ K G+ R+NMMGKRVN+A RSVI+PDP + + IGVP FA+ LTYP PV
Sbjct: 468 LEEGIKQKLEKKEGLFRKNMMGKRVNYAARSVISPDPNIETNEIGVPPVFARKLTYPEPV 527
Query: 565 TPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPEGN 620
T N +++ VINGP+ +PGA I+NE+G +V + + +R SLA +L+ P N
Sbjct: 528 TSHNFRDMQQAVINGPDKWPGAAAIENENGQIVNLRNKSQEERSSLANQLLAPTSN 583
Score = 210 (79.0 bits), Expect = 8.3e-12, Sum P(2) = 8.3e-12
Identities = 41/97 (42%), Positives = 61/97 (62%)
Query: 17 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 76
RSVI+PDP + + IGVP FA+ LTYP PVT N +++ VINGP+ +PGA I+NE+
Sbjct: 497 RSVISPDPNIETNEIGVPPVFARKLTYPEPVTSHNFRDMQQAVINGPDKWPGAAAIENEN 556
Query: 77 GSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKI 113
G +V + + +R SLA +L+ P + +K+
Sbjct: 557 GQIVNLRNKSQEERSSLANQLLAPTSNNSGNMRNKKV 593
Score = 204 (76.9 bits), Expect = 5.2e-51, Sum P(2) = 5.2e-51
Identities = 57/176 (32%), Positives = 88/176 (50%)
Query: 133 EVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIE 192
E++ SV ++ + TF++L + +PGGLYD A+G + C TC + C GH GHIE
Sbjct: 23 EIRAFSVRRIENDSTFDTLLNPVPGGLYDPALGAWGD--SVCATCNLGPSACPGHPGHIE 80
Query: 193 LPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETL 252
LPVPV + +F V LL+ C CH+ + +I +LL G + +AK L+ L
Sbjct: 81 LPVPVYHPVFMDQVLRLLRSQCAYCHRFRMRRRDINRYICLFRLLQYGLLAEAKRLD--L 138
Query: 253 FNEENLRLHPAQLVQLVDSHVQSILAHGTKIC-DINDYKGGEELRSAFVAQVLSRH 307
+ + + +S + A G K D+ K R+A+V QVL +H
Sbjct: 139 IGDSLDGVSEGDTPKGGESETED--AQGGKTTEDVVIRK-----RNAYVRQVLQQH 187
Score = 41 (19.5 bits), Expect = 8.3e-12, Sum P(2) = 8.3e-12
Identities = 18/73 (24%), Positives = 34/73 (46%)
Query: 526 GKRVNF-AGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVY- 583
G+ V AG+SV P + +++ + AK +T +P LR++++ +
Sbjct: 1212 GEAVGIVAGQSVGEPSTQMTLNTFHLAGHSAKNVTLGIP-------RLRELLMTASSKIS 1264
Query: 584 -PGANMIQNEDGS 595
P +I NE+ S
Sbjct: 1265 TPSMTLILNEEMS 1277
>WB|WBGene00012999 [details] [associations]
symbol:rpoa-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
HSSP:P04050 KO:K02999 OMA:CLLNETT PANTHER:PTHR19376:SF11
GeneTree:ENSGT00550000074861 EMBL:Z83219 EMBL:AL032648 EMBL:Z93392
PIR:A88355 PIR:T19606 RefSeq:NP_001022450.1
ProteinModelPortal:G5ED21 SMR:G5ED21 PRIDE:G5ED21
EnsemblMetazoa:Y48E1A.1a GeneID:175015 KEGG:cel:CELE_Y48E1A.1
CTD:175015 WormBase:Y48E1A.1a NextBio:886412 Uniprot:G5ED21
Length = 1737
Score = 361 (132.1 bits), Expect = 3.9e-49, Sum P(2) = 3.9e-49
Identities = 85/254 (33%), Positives = 138/254 (54%)
Query: 367 SEVEADFKKLWTNEHLFLKCLIPVL-DTT--KELIAT-DIMFIRSLVVPPNNLRPLSMEQ 422
+EV F+ L+ N+ L L P+L D +++I D +F+ ++VPP RP+ M +
Sbjct: 313 AEVREHFRMLFKNDGKLLLKLFPMLVDELNGEDMICPLDGLFLERILVPPKKFRPIRMFK 372
Query: 423 MPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHE 482
E + + +L + ++ ++ + MK + L +RG T+N ++ +++ +
Sbjct: 373 GAQYEDPQTLNLRKVLEATETISAISLIMKGDTSAQLKELIANRVRGKTINAQMHDAYLQ 432
Query: 483 LQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPY 542
LQ + + D LN I G+KQ+L+ K G+ R +MMGKRVNFA RSVITPDPY
Sbjct: 433 LQLRANAIFDQDLNKGDRDS---IAGIKQILEKKQGLFRMHMMGKRVNFACRSVITPDPY 489
Query: 543 LNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSS 602
L+ID IG+P FAK LT+ PV +NV ++ ++ GP+ +PGAN G +
Sbjct: 490 LDIDEIGIPDIFAKKLTFTEPVNAFNVNEMKGLLRQGPHQHPGANFFVEPSGKKTMLGDK 549
Query: 603 --QAVQRESLAKRL 614
+ +R +AK L
Sbjct: 550 PEEKKRRMQMAKTL 563
Score = 238 (88.8 bits), Expect = 3.9e-49, Sum P(2) = 3.9e-49
Identities = 82/265 (30%), Positives = 122/265 (46%)
Query: 125 KLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTK- 183
KL+ Y E+ +LSV+K+ TF+ +GH I GGLYD +GP D C TC N Y +
Sbjct: 19 KLRSYFPHEIDKLSVLKITQTKTFDEVGHPIAGGLYDPILGP-DNTFDMCMTC-NQYERH 76
Query: 184 CKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPA--TSQLLFINQIKLLDAGY 241
C GH+GHI+L VPV N L F+ LLK SC CH++ + + + Q++ + G
Sbjct: 77 CPGHMGHIQLAVPVFNPLLFQFTYNLLKGSCVHCHRLTCKGDGVNARMLLAQLRCFELGV 136
Query: 242 VTQAKDLEETLFNE-ENLRLH---PAQLVQLVDSHVQSI----LAHGTKICDINDYKGGE 293
A DLE L ++ N L ++ VD+ + + L+ T + K
Sbjct: 137 EHVAFDLESILRDKIANADLFGDDDSKTFNDVDACIAQLANKPLSELTAFKSMPT-KNSV 195
Query: 294 ELRSAFVAQVLSRHV-KR--KCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNK 350
+L+ + + L H+ KR KC C N + +S ID S + K
Sbjct: 196 QLKKDIITEFLRSHLFKRLQKCPLCK---NRNGVLRNDGARSILIDFT----SGARGGGK 248
Query: 351 SSNQIIRKREQGYVMASEVEADFKK 375
S II + GY S + D +K
Sbjct: 249 SKKAIIIIGDNGYNEESSTDEDEEK 273
Score = 167 (63.8 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 36/86 (41%), Positives = 50/86 (58%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F RSVITPDPYL+ID IG+P FAK LT+ PV +NV ++ ++ GP+ +PGAN
Sbjct: 478 FACRSVITPDPYLDIDEIGIPDIFAKKLTFTEPVNAFNVNEMKGLLRQGPHQHPGANFFV 537
Query: 74 NEDGSVVRISSS--QAVQRESLAKRL 97
G + + +R +AK L
Sbjct: 538 EPSGKKTMLGDKPEEKKRRMQMAKTL 563
Score = 41 (19.5 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 333 FKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVE----ADF 373
F+ +D +D + LNK + + + +AS+ E ADF
Sbjct: 1053 FRYGEDGMDTTKATFLNKKTMPFLEDNLEAVTLASKPEGVTDADF 1097
>TAIR|locus:2076661 [details] [associations]
symbol:NRPA1 "nuclear RNA polymerase A1" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;ISS;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA] [GO:0006354
"DNA-dependent transcription, elongation" evidence=RCA] [GO:0006406
"mRNA export from nucleus" evidence=RCA] [GO:0006606 "protein
import into nucleus" evidence=RCA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0009506 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
EMBL:AL049660 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 HSSP:P04050 KO:K02999 OMA:CLLNETT
PANTHER:PTHR19376:SF11 HOGENOM:HOG000205401 IPI:IPI00546513
PIR:T06754 RefSeq:NP_191325.1 UniGene:At.50286
ProteinModelPortal:Q9SVY0 SMR:Q9SVY0 IntAct:Q9SVY0 STRING:Q9SVY0
PaxDb:Q9SVY0 PRIDE:Q9SVY0 EnsemblPlants:AT3G57660.1 GeneID:824935
KEGG:ath:AT3G57660 TAIR:At3g57660 InParanoid:Q9SVY0
PhylomeDB:Q9SVY0 ProtClustDB:CLSN2684581 Genevestigator:Q9SVY0
Uniprot:Q9SVY0
Length = 1670
Score = 310 (114.2 bits), Expect = 6.6e-49, Sum P(3) = 6.6e-49
Identities = 66/158 (41%), Positives = 101/158 (63%)
Query: 467 IRGDTLNNKLQNS-----WHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIR 521
I G+ NKL S W LQ +V++L D+K ++ G+ Q+L+ K G+ R
Sbjct: 381 ILGNACTNKLDQSKVIFRWRNLQESVNVLFDSKTATVQSQ--RDSSGICQLLEKKEGLFR 438
Query: 522 QNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPN 581
Q MMGKRVN A RSVI+PDPY+ ++ IG+P FA LTYP VTPWNV LR+ +INGP+
Sbjct: 439 QKMMGKRVNHACRSVISPDPYIAVNDIGIPPCFALKLTYPERVTPWNVEKLREAIINGPD 498
Query: 582 VYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPEG 619
++PGA ++ S +++ S++ +R ++A++L++ G
Sbjct: 499 IHPGATHYSDKS-STMKLPSTEKARR-AIARKLLSSRG 534
Score = 241 (89.9 bits), Expect = 6.6e-49, Sum P(3) = 6.6e-49
Identities = 48/130 (36%), Positives = 74/130 (56%)
Query: 120 VPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGN 179
V E ++ + T+Q+V++ S +KV SPI +++G+ PGGLYDL +GP ++ C +CG
Sbjct: 26 VVESVRFSFMTEQDVRKHSFLKVTSPILHDNVGNPFPGGLYDLKLGPKDDK-QACNSCGQ 84
Query: 180 NYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDA 239
C GH GHIEL P+ + L F + L+ +CF CH ++Q+KL+
Sbjct: 85 LKLACPGHCGHIELVFPIYHPLLFNLLFNFLQRACFFCHHFMAKPEDVERAVSQLKLIIK 144
Query: 240 GYVTQAKDLE 249
G + AK LE
Sbjct: 145 GDIVSAKQLE 154
Score = 199 (75.1 bits), Expect = 8.9e-12, P = 8.9e-12
Identities = 37/83 (44%), Positives = 61/83 (73%)
Query: 17 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 76
RSVI+PDPY+ ++ IG+P FA LTYP VTPWNV LR+ +INGP+++PGA ++
Sbjct: 451 RSVISPDPYIAVNDIGIPPCFALKLTYPERVTPWNVEKLREAIINGPDIHPGATHYSDKS 510
Query: 77 GSVVRISSSQAVQRESLAKRLIT 99
S +++ S++ +R ++A++L++
Sbjct: 511 -STMKLPSTEKARR-AIARKLLS 531
Score = 97 (39.2 bits), Expect = 6.6e-49, Sum P(3) = 6.6e-49
Identities = 28/100 (28%), Positives = 47/100 (47%)
Query: 345 DKSLNKSSNQIIRKREQGY----VMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIAT 400
DK + S ++ + E+ ++ SEV K LW NEH F + + + E I
Sbjct: 279 DKETREKSTEVAAEFEEHNSKRDLLPSEVRNILKHLWQNEHEFCSFIGDLWQSGSEKIDY 338
Query: 401 DIMFIRSLVVPPNNLRPLSMEQMPPVEHSR----NKLYQS 436
+ F+ S++VPP RP + +EH + NK+ +S
Sbjct: 339 SMFFLESVLVPPTKFRPPTTGGDSVMEHPQTVGLNKVIES 378
>DICTYBASE|DDB_G0275759 [details] [associations]
symbol:rpa1 "RNA polymerase I, largest subunit"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006360 "transcription
from RNA polymerase I promoter" evidence=ISS] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
dictyBase:DDB_G0275759 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GenomeReviews:CM000151_GR EMBL:AAFI02000013 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0006360 GO:GO:0005736 GO:GO:0003899
eggNOG:COG0086 RefSeq:XP_643519.1 HSSP:P04050
ProteinModelPortal:Q86H36 STRING:Q86H36 PRIDE:Q86H36
EnsemblProtists:DDB0216292 GeneID:8620100 KEGG:ddi:DDB_G0275759
KO:K02999 OMA:CLLNETT ProtClustDB:CLSZ2497252
PANTHER:PTHR19376:SF11 Uniprot:Q86H36
Length = 1615
Score = 308 (113.5 bits), Expect = 2.8e-44, Sum P(2) = 2.8e-44
Identities = 97/277 (35%), Positives = 153/277 (55%)
Query: 353 NQIIRKREQGYVMAS-EVEADFKKLWTNEH----LFLKCLIPVLDTTKELIATDI--MFI 405
+ + + E G A EV + KKL+ NE + L L+P++ T K ++ F
Sbjct: 270 SSVKEQTEHGTWFAPWEVLDNMKKLFENEKEILDMLLGHLVPIV-TNKGGAKKNVGRQFT 328
Query: 406 RSLVVPPNNLR--PLSMEQM-PP--VEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLL 460
+ V +R P++ + PP V R++ Q+ Y G +KS NK ++
Sbjct: 329 KESNVDSLFMRVFPVTPARYRPPNFVNGRRSEHPQNSHYK-GMVKS------NK----MI 377
Query: 461 SEALKGIRGDTLNNKLQNSWHELQYNVDLLMD-AKLNINKTTGAHQIDGLKQMLDGKTGM 519
+++ G+ L NS +LQ +V+ + D +K N N A+ G+KQ+L+ K G+
Sbjct: 378 RQSIDA--GEGKAKFLVNSVCDLQMHVNNMYDNSKSNSNTNEVAN---GIKQILEKKEGL 432
Query: 520 IRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVING 579
R++MMGKRVN+A R+VI+PD L + +GVP FAKTLT+P PVT +N L + VING
Sbjct: 433 FRKHMMGKRVNYAARTVISPDISLETNEMGVPQYFAKTLTFPQPVTSFNYNQLAQAVING 492
Query: 580 PNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLIT 616
P YPGAN I++E+G ++ +S +R +L+K L+T
Sbjct: 493 PEQYPGANFIEDENGHLINLSKESQEKRIALSKTLLT 529
Score = 248 (92.4 bits), Expect = 2.8e-44, Sum P(2) = 2.8e-44
Identities = 52/144 (36%), Positives = 84/144 (58%)
Query: 109 MKEKIITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPIS 168
M + + ++E+ + ++YT +V++LSV ++ +F+ LG +PGGL+D A+GP
Sbjct: 3 MSQSALIKEEI--SSVSFQFYTSDDVRKLSVKQIVEIESFDMLGGPVPGGLHDPALGPTG 60
Query: 169 ERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCH--KINIPATS 226
+ C TC ++ +C GH GHIEL +P N + F+ + LLK CF CH K P +
Sbjct: 61 P-AERCATCSLDFIECPGHFGHIELAIPCYNPVSFQTIFKLLKNKCFHCHHFKHGKPIIN 119
Query: 227 QLLFINQIKLLDAGYVTQAKDLEE 250
Q FI ++ LL G V +A++L E
Sbjct: 120 Q--FIEELTLLFKGDVVKARNLRE 141
Score = 211 (79.3 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 42/95 (44%), Positives = 61/95 (64%)
Query: 17 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 76
R+VI+PD L + +GVP FAKTLT+P PVT +N L + VINGP YPGAN I++E+
Sbjct: 447 RTVISPDISLETNEMGVPQYFAKTLTFPQPVTSFNYNQLAQAVINGPEQYPGANFIEDEN 506
Query: 77 GSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKE 111
G ++ +S +R +L+K L+T R + K+
Sbjct: 507 GHLINLSKESQEKRIALSKTLLTSHPHAPRGVNKK 541
Score = 46 (21.3 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 426 VEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNK 475
+E + KL +I + S K +++ + E S + ++ KGI +N K
Sbjct: 1414 IEFDQKKLTFTISVASDSKKVLMLGIVETEASKFVLKSCKGITRCFVNEK 1463
Score = 41 (19.5 bits), Expect = 5.5e-16, Sum P(2) = 5.5e-16
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 335 IDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVEADFKKL 376
+D D+ + S +S N S++ I ++ V +D KK+
Sbjct: 1393 VDSDSDEISNSRSSNSFSDESIEFDQKKLTFTISVASDSKKV 1434
Score = 41 (19.5 bits), Expect = 5.5e-16, Sum P(2) = 5.5e-16
Identities = 10/43 (23%), Positives = 20/43 (46%)
Query: 493 AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRS 535
A +NK H + G + + + + + +MG RV G++
Sbjct: 534 APRGVNKKVYRHLLSGDYVLANRQPTLHKPGIMGHRVKVLGKN 576
>UNIPROTKB|J9P5G4 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 KO:K02999 PANTHER:PTHR19376:SF11
CTD:25885 GeneTree:ENSGT00550000074861 EMBL:AAEX03010931
RefSeq:XP_532976.3 Ensembl:ENSCAFT00000047500 GeneID:475766
KEGG:cfa:475766 Uniprot:J9P5G4
Length = 1717
Score = 455 (165.2 bits), Expect = 5.9e-41, P = 5.9e-41
Identities = 130/400 (32%), Positives = 207/400 (51%)
Query: 246 KDLEETLFN-EENLRLHPAQLVQ--LVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQ 302
++ + T F +E L + A++VQ L+ H AH +CD RS +A
Sbjct: 148 ENADPTAFKIQEELEQYTAKIVQNNLLGPHG----AHVKNVCDS---------RSKLIAY 194
Query: 303 VLSRHVKRK-CIFCATPINAISYQQR-KIIKSFK--IDKDNLDQSLDKSLNKSSNQIIRK 358
H+ K C C T + + + K+ ++ + K DQ + L Q+ K
Sbjct: 195 FWKAHMTAKRCPHCKTGRSVVRKEHNSKLTVTYPAMVHK-KADQKDTEPLGIEETQL-GK 252
Query: 359 REQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTT--KELIATDIMFIRSLVVPPNNLR 416
R GY+ + LW NE FL L L+ + + F+ LVVPP+ R
Sbjct: 253 R--GYLTPTSAREHLTALWKNEGFFLNYLFSGLEDVDMESRFNPSVFFLDFLVVPPSRYR 310
Query: 417 PLSM--EQMPPVEHSRNKLYQSILYSCGSLKSVIMAM----------------KNKEQSD 458
P++ +QM + + Q+++ ++ ++ M + K+ S
Sbjct: 311 PVNRLGDQM--FTNGQTVNLQAVMKDMVLIRKLLALMAQEQELPCEVSGPAKDEEKDSSI 368
Query: 459 LLSEA-LKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKT 517
L + L + G +L +KL N W LQ +V+++ D++++ K + G++Q+L+ K
Sbjct: 369 ALDRSFLSMLPGQSLTDKLYNIWIRLQSHVNIVFDSEMD--KLM-MEKYPGIRQILEKKD 425
Query: 518 GMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVI 577
G+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VI
Sbjct: 426 GLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVI 485
Query: 578 NGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
NGPNV+PGA+M+ NEDGS +S+ QRE++AK+L+TP
Sbjct: 486 NGPNVHPGASMVINEDGSRTALSAIDLTQREAVAKQLLTP 525
Score = 331 (121.6 bits), Expect = 4.1e-26, P = 4.1e-26
Identities = 94/305 (30%), Positives = 147/305 (48%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P +SLG+ GLYDLA+GP + + C+TC ++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSK-EVCSTCVQDFNNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELP+ V N L F + LLL+ SC CH + P L + Q+++L+ G + +L
Sbjct: 79 GHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLVCQLRVLEVGALQAVYEL 138
Query: 249 EETL--FNEEN-----LRLHPAQLVQLVDSHVQSILA--HGTKICDINDYKGGEELRSAF 299
E L F EEN ++ +L Q VQ+ L HG + ++ D RS
Sbjct: 139 ERILNRFLEENADPTAFKIQE-ELEQYTAKIVQNNLLGPHGAHVKNVCDS------RSKL 191
Query: 300 VAQVLSRHVKRK-CIFCATPINAISYQQR-KIIKSFK-IDKDNLDQSLDKSLNKSSNQII 356
+A H+ K C C T + + + K+ ++ + DQ + L Q+
Sbjct: 192 IAYFWKAHMTAKRCPHCKTGRSVVRKEHNSKLTVTYPAMVHKKADQKDTEPLGIEETQL- 250
Query: 357 RKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTT--KELIATDIMFIRSLVVPPNN 414
KR GY+ + LW NE FL L L+ + + F+ LVVPP+
Sbjct: 251 GKR--GYLTPTSAREHLTALWKNEGFFLNYLFSGLEDVDMESRFNPSVFFLDFLVVPPSR 308
Query: 415 LRPLS 419
RP++
Sbjct: 309 YRPVN 313
Score = 275 (101.9 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 57/110 (51%), Positives = 74/110 (67%)
Query: 17 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 76
RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+ NED
Sbjct: 442 RSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINED 501
Query: 77 GSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKIITRQEVVPEILKL 126
GS +S+ QRE++AK+L+TP + KI+ R +IL L
Sbjct: 502 GSRTALSAIDLTQREAVAKQLLTPATGAPKP-QGTKIVCRHVKNGDILLL 550
Score = 38 (18.4 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 8/37 (21%), Positives = 20/37 (54%)
Query: 334 KIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVE 370
+++++N D+ + + + S N + +EQ + S E
Sbjct: 1433 EVEEENEDEDMQEEEHISGNSAHKAQEQNEEVGSGPE 1469
>UNIPROTKB|B9ZVN9 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 EMBL:AC009309 PANTHER:PTHR19376:SF11 HGNC:HGNC:17264
HOGENOM:HOG000205401 ChiTaRS:POLR1A EMBL:AC012511 IPI:IPI00916060
ProteinModelPortal:B9ZVN9 STRING:B9ZVN9 Ensembl:ENST00000409681
ArrayExpress:B9ZVN9 Bgee:B9ZVN9 Uniprot:B9ZVN9
Length = 1659
Score = 447 (162.4 bits), Expect = 1.5e-39, P = 1.5e-39
Identities = 126/389 (32%), Positives = 200/389 (51%)
Query: 253 FNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRK- 311
F EEN +++ + ++ + I+ + K E +S +A H+ K
Sbjct: 145 FLEENPDPSASEIREELEQYTTEIVQNNLLGSQGAHVKNVCESKSKLIALFWKAHMNAKR 204
Query: 312 CIFCATPINAISYQQR-KIIKSFK-IDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEV 369
C C T + + + K+ +F + Q + L QI KR GY+ +
Sbjct: 205 CPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQI-GKR--GYLTPTSA 261
Query: 370 EADFKKLWTNEHLFLKCLIPVLDTT--KELIATDIMFIRSLVVPPNNLRPLSM--EQMPP 425
LW NE FL L +D + + F+ LVVPP+ RP+S +QM
Sbjct: 262 REHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSRYRPVSRLGDQM-- 319
Query: 426 VEHSRNKLYQSILYSCGSLKSVI--MAMKNK-----------EQSDLL----SEALKGIR 468
+ + Q+++ ++ ++ MA + K E+ D L L +
Sbjct: 320 FTNGQTVNLQAVMKDVVLIRKLLALMAQEQKLPEEVATPTTDEEKDSLIAIDRSFLSTLP 379
Query: 469 GDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKR 528
G +L +KL N W LQ +V+++ D++++ K + G++Q+L+ K G+ R++MMGKR
Sbjct: 380 GQSLIDKLYNIWIRLQSHVNIVFDSEMD--KLM-MDKYPGIRQILEKKEGLFRKHMMGKR 436
Query: 529 VNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANM 588
V++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M
Sbjct: 437 VDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASM 496
Query: 589 IQNEDGSVVRISSSQAVQRESLAKRLITP 617
+ NEDGS +S+ QRE++AK+L+TP
Sbjct: 497 VINEDGSRTALSAVDMTQREAVAKQLLTP 525
Score = 335 (123.0 bits), Expect = 1.4e-26, P = 1.4e-26
Identities = 90/298 (30%), Positives = 144/298 (48%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P +SLG+ GLYDLA+GP + + C+TC +++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSK-EVCSTCVQDFSNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELP+ V N L F + LLL+ SC CH + P L + Q+++L+ G + +L
Sbjct: 79 GHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSR 306
E L F EEN +++ + ++ + I+ + K E +S +A
Sbjct: 139 ERILNRFLEENPDPSASEIREELEQYTTEIVQNNLLGSQGAHVKNVCESKSKLIALFWKA 198
Query: 307 HVKRK-CIFCATPINAISYQQR-KIIKSFK-IDKDNLDQSLDKSLNKSSNQIIRKREQGY 363
H+ K C C T + + + K+ +F + Q + L QI KR GY
Sbjct: 199 HMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQI-GKR--GY 255
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPVLDTT--KELIATDIMFIRSLVVPPNNLRPLS 419
+ + LW NE FL L +D + + F+ LVVPP+ RP+S
Sbjct: 256 LTPTSAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSRYRPVS 313
Score = 275 (101.9 bits), Expect = 5.1e-20, P = 5.1e-20
Identities = 57/110 (51%), Positives = 74/110 (67%)
Query: 17 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 76
RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+ NED
Sbjct: 442 RSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINED 501
Query: 77 GSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKIITRQEVVPEILKL 126
GS +S+ QRE++AK+L+TP + KI+ R +IL L
Sbjct: 502 GSRTALSAVDMTQREAVAKQLLTPATGAPKP-QGTKIVCRHVKNGDILLL 550
>UNIPROTKB|O95602 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase I subunit RPA1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=NAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=TAS] [GO:0006361 "transcription
initiation from RNA polymerase I promoter" evidence=TAS]
[GO:0006362 "transcription elongation from RNA polymerase I
promoter" evidence=TAS] [GO:0006363 "termination of RNA polymerase
I transcription" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 EMBL:CH471053
GO:GO:0005654 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0009303
Reactome:REACT_1788 GO:GO:0006363 GO:GO:0006362 GO:GO:0006361
GO:GO:0005736 GO:GO:0003899 eggNOG:COG0086 KO:K02999 OMA:CLLNETT
PANTHER:PTHR19376:SF11 EMBL:U33460 EMBL:AH007280 EMBL:AK302458
EMBL:BC117173 EMBL:BC126303 EMBL:AL117467 IPI:IPI00031960
PIR:T17252 RefSeq:NP_056240.2 UniGene:Hs.531818
ProteinModelPortal:O95602 SMR:O95602 DIP:DIP-27537N IntAct:O95602
MINT:MINT-111492 STRING:O95602 PhosphoSite:O95602
SWISS-2DPAGE:O95602 PaxDb:O95602 PRIDE:O95602
Ensembl:ENST00000263857 GeneID:25885 KEGG:hsa:25885 UCSC:uc002sqs.3
CTD:25885 GeneCards:GC02M086253 H-InvDB:HIX0002233 HGNC:HGNC:17264
HPA:CAB010145 neXtProt:NX_O95602 PharmGKB:PA134891380
HOGENOM:HOG000205401 HOVERGEN:HBG017741 InParanoid:O95602
OrthoDB:EOG41VK23 ChiTaRS:POLR1A GenomeRNAi:25885 NextBio:47304
PMAP-CutDB:O95602 ArrayExpress:O95602 Bgee:O95602 CleanEx:HS_POLR1A
Genevestigator:O95602 GermOnline:ENSG00000068654 Uniprot:O95602
Length = 1720
Score = 447 (162.4 bits), Expect = 1.6e-39, P = 1.6e-39
Identities = 126/389 (32%), Positives = 200/389 (51%)
Query: 253 FNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRK- 311
F EEN +++ + ++ + I+ + K E +S +A H+ K
Sbjct: 145 FLEENPDPSASEIREELEQYTTEIVQNNLLGSQGAHVKNVCESKSKLIALFWKAHMNAKR 204
Query: 312 CIFCATPINAISYQQR-KIIKSFK-IDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEV 369
C C T + + + K+ +F + Q + L QI KR GY+ +
Sbjct: 205 CPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQI-GKR--GYLTPTSA 261
Query: 370 EADFKKLWTNEHLFLKCLIPVLDTT--KELIATDIMFIRSLVVPPNNLRPLSM--EQMPP 425
LW NE FL L +D + + F+ LVVPP+ RP+S +QM
Sbjct: 262 REHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSRYRPVSRLGDQM-- 319
Query: 426 VEHSRNKLYQSILYSCGSLKSVI--MAMKNK-----------EQSDLL----SEALKGIR 468
+ + Q+++ ++ ++ MA + K E+ D L L +
Sbjct: 320 FTNGQTVNLQAVMKDVVLIRKLLALMAQEQKLPEEVATPTTDEEKDSLIAIDRSFLSTLP 379
Query: 469 GDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKR 528
G +L +KL N W LQ +V+++ D++++ K + G++Q+L+ K G+ R++MMGKR
Sbjct: 380 GQSLIDKLYNIWIRLQSHVNIVFDSEMD--KLM-MDKYPGIRQILEKKEGLFRKHMMGKR 436
Query: 529 VNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANM 588
V++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M
Sbjct: 437 VDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASM 496
Query: 589 IQNEDGSVVRISSSQAVQRESLAKRLITP 617
+ NEDGS +S+ QRE++AK+L+TP
Sbjct: 497 VINEDGSRTALSAVDMTQREAVAKQLLTP 525
Score = 335 (123.0 bits), Expect = 1.5e-26, P = 1.5e-26
Identities = 90/298 (30%), Positives = 144/298 (48%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P +SLG+ GLYDLA+GP + + C+TC +++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSK-EVCSTCVQDFSNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIELP+ V N L F + LLL+ SC CH + P L + Q+++L+ G + +L
Sbjct: 79 GHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSR 306
E L F EEN +++ + ++ + I+ + K E +S +A
Sbjct: 139 ERILNRFLEENPDPSASEIREELEQYTTEIVQNNLLGSQGAHVKNVCESKSKLIALFWKA 198
Query: 307 HVKRK-CIFCATPINAISYQQR-KIIKSFK-IDKDNLDQSLDKSLNKSSNQIIRKREQGY 363
H+ K C C T + + + K+ +F + Q + L QI KR GY
Sbjct: 199 HMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQI-GKR--GY 255
Query: 364 VMASEVEADFKKLWTNEHLFLKCLIPVLDTT--KELIATDIMFIRSLVVPPNNLRPLS 419
+ + LW NE FL L +D + + F+ LVVPP+ RP+S
Sbjct: 256 LTPTSAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSRYRPVS 313
Score = 275 (101.9 bits), Expect = 5.3e-20, P = 5.3e-20
Identities = 57/110 (51%), Positives = 74/110 (67%)
Query: 17 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 76
RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+ NED
Sbjct: 442 RSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINED 501
Query: 77 GSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKIITRQEVVPEILKL 126
GS +S+ QRE++AK+L+TP + KI+ R +IL L
Sbjct: 502 GSRTALSAVDMTQREAVAKQLLTPATGAPKP-QGTKIVCRHVKNGDILLL 550
>MGI|MGI:1096397 [details] [associations]
symbol:Polr1a "polymerase (RNA) I polypeptide A"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=ISO;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009303 "rRNA transcription" evidence=ISO]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] Reactome:REACT_78136 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 MGI:MGI:1096397 GO:GO:0005654 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0009303 GO:GO:0005736 GO:GO:0003899 eggNOG:COG0086
CleanEx:MM_RPA1 Reactome:REACT_86751 KO:K02999 OMA:CLLNETT
PANTHER:PTHR19376:SF11 CTD:25885 HOGENOM:HOG000205401
HOVERGEN:HBG017741 OrthoDB:EOG41VK23 ChiTaRS:POLR1A EMBL:AF000938
EMBL:BC053744 IPI:IPI00313726 PIR:T13961 RefSeq:NP_033114.3
UniGene:Mm.135581 ProteinModelPortal:O35134 SMR:O35134
STRING:O35134 PhosphoSite:O35134 PaxDb:O35134 PRIDE:O35134
Ensembl:ENSMUST00000055296 GeneID:20019 KEGG:mmu:20019
UCSC:uc009chv.2 GeneTree:ENSGT00550000074861 InParanoid:O35134
NextBio:297531 Bgee:O35134 Genevestigator:O35134
GermOnline:ENSMUSG00000049553 Uniprot:O35134
Length = 1717
Score = 443 (161.0 bits), Expect = 5.6e-39, P = 5.6e-39
Identities = 104/279 (37%), Positives = 165/279 (59%)
Query: 360 EQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTT--KELIATDIMFIRSLVVPPNNLRP 417
++GY+ S + +W NE FL L LD + + F+ +VVPP+ RP
Sbjct: 259 KRGYLTPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGPESSFNPSMFFLDFIVVPPSRYRP 318
Query: 418 LSM--EQMPPVEHSRNKLYQSILYSCGSLKSVI--MAMKNK---EQSDL----------- 459
++ +QM + + Q+++ ++ ++ MA + K E ++L
Sbjct: 319 VNRLGDQM--FTNGQTVNLQAVMKDAVLIRKLLALMAQEQKLPCEMTELTIDKENDSSVA 376
Query: 460 LSEALKGIR-GDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTG 518
+ + G+ G +L +KL N W LQ +V+++ D++++ K + G++Q+L+ K G
Sbjct: 377 IDRSFLGLLPGPSLTDKLYNIWIRLQSHVNIVFDSEMD--KLM-LEKYPGIRQILEKKEG 433
Query: 519 MIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVIN 578
+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VIN
Sbjct: 434 LFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVIN 493
Query: 579 GPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
GPNV+PGA+M+ NEDGS +SS A QRE++AK+L+TP
Sbjct: 494 GPNVHPGASMVINEDGSRTALSSVDAAQREAVAKQLLTP 532
Score = 331 (121.6 bits), Expect = 4.1e-26, P = 4.1e-26
Identities = 87/302 (28%), Positives = 146/302 (48%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P + LG+ GLYDLA+GP + + C TC ++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYVDYLGNPSANGLYDLALGPADSK-EVCATCVQDFNNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHI+LP+ V N F + LLL+ SC CH + P + L I+Q+++L+ G + +L
Sbjct: 79 GHIDLPLTVYNPFLFDKLYLLLRGSCLSCHMLTCPRAAIYLLISQLRVLEVGALQAVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSR 306
E L F EE ++ + ++ + IL + K E RS VAQ
Sbjct: 139 ERILSRFLEETGDPSAFEIQEELEEYTSKILQNNLLGSQGTHVKNVCESRSKLVAQFWKT 198
Query: 307 HVKRK-CIFCATPINAISYQQR-KIIKSFK--IDK--DNLDQSLDKSLNKSSN-QIIRKR 359
H+ K C C T + + + K+I ++ + K D L + + ++ +
Sbjct: 199 HMAAKQCPHCKTGRSVVRKEHNSKLIITYPATVHKKSDQEGTELPEGVPEAPGIDKAQMG 258
Query: 360 EQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTT--KELIATDIMFIRSLVVPPNNLRP 417
++GY+ S + +W NE FL L LD + + F+ +VVPP+ RP
Sbjct: 259 KRGYLTPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGPESSFNPSMFFLDFIVVPPSRYRP 318
Query: 418 LS 419
++
Sbjct: 319 VN 320
Score = 282 (104.3 bits), Expect = 9.2e-21, P = 9.2e-21
Identities = 53/84 (63%), Positives = 66/84 (78%)
Query: 17 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 76
RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+ NED
Sbjct: 449 RSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINED 508
Query: 77 GSVVRISSSQAVQRESLAKRLITP 100
GS +SS A QRE++AK+L+TP
Sbjct: 509 GSRTALSSVDAAQREAVAKQLLTP 532
>UNIPROTKB|F1LQN7 [details] [associations]
symbol:Polr1a "DNA-directed RNA polymerase" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF05000 SMART:SM00663 RGD:620824 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 PANTHER:PTHR19376:SF11 IPI:IPI00389616
Ensembl:ENSRNOT00000013417 ArrayExpress:F1LQN7 Uniprot:F1LQN7
Length = 1011
Score = 438 (159.2 bits), Expect = 2.0e-38, Sum P(2) = 2.0e-38
Identities = 102/279 (36%), Positives = 164/279 (58%)
Query: 360 EQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTT--KELIATDIMFIRSLVVPPNNLRP 417
++GY+ S + +W NE FL L LD + + F+ +VVPP+ RP
Sbjct: 280 KRGYLTPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGPESSFNPSMFFLDFIVVPPSRYRP 339
Query: 418 LSM--EQMPPVEHSRNKLYQSILYSCGSLKSV--IMAMKNK---EQSDLLSEA------- 463
++ +QM + + Q+++ ++ + +MA + K E +++ +
Sbjct: 340 INRLGDQM--FTNGQTVNLQAVMKDAVLIRKLLAVMAQEQKLPCEMTEITIDKENDSSGA 397
Query: 464 -----LKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTG 518
L + G +L +KL N W LQ +V+++ D+ +++K + G++Q+L+ K G
Sbjct: 398 IDRSFLSLLPGQSLTDKLYNIWIRLQSHVNIVFDS--DMDKLM-LEKYPGIRQILEKKEG 454
Query: 519 MIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVIN 578
+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VIN
Sbjct: 455 LFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVIN 514
Query: 579 GPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
GPNV+PGA+M+ NEDGS +S+ A QRE++AK+L+TP
Sbjct: 515 GPNVHPGASMVINEDGSRTALSAVDATQREAVAKQLLTP 553
Score = 316 (116.3 bits), Expect = 8.1e-25, P = 8.1e-25
Identities = 89/336 (26%), Positives = 158/336 (47%)
Query: 134 VKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIEL 193
+++LSV + +P +SLG+ GLYDLA+GP + + C+TC ++ C GH+GHI+L
Sbjct: 46 IRKLSVKSITNPRYVDSLGNPSADGLYDLALGPADSK-EVCSTCVQDFNNCSGHLGHIDL 104
Query: 194 PVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEETL- 252
P+ V N L F + LLL+ SC CH + P + L + Q+K+LD G + +LE L
Sbjct: 105 PLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAAIHLLVCQLKVLDVGALQAVYELERILS 164
Query: 253 -FNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRK 311
F EE ++ + ++ + IL + K E RS VA H+ K
Sbjct: 165 RFLEETSDPSAFEIQEELEEYTSKILQNNLLGSQGAHVKNVCESRSKLVAHFWKTHMAAK 224
Query: 312 -CIFCATPINAISYQQR-KIIKSFK--IDKDN--LDQSLDKSLNKSSN-QIIRKREQGYV 364
C C T + + + K+ ++ + K + D L + + + ++GY+
Sbjct: 225 RCPHCKTGRSVVRKEHNSKLTITYPAMVHKKSGQKDAELPEGAPAAPGIDEAQMGKRGYL 284
Query: 365 MASEVEADFKKLWTNEHLFLKCLIPVLDTT--KELIATDIMFIRSLVVPPNNLRPLSM-- 420
S + +W NE FL L LD + + F+ +VVPP+ RP++
Sbjct: 285 TPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGPESSFNPSMFFLDFIVVPPSRYRPINRLG 344
Query: 421 EQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQ 456
+QM + + Q+++ ++ ++ M +++
Sbjct: 345 DQM--FTNGQTVNLQAVMKDAVLIRKLLAVMAQEQK 378
Score = 279 (103.3 bits), Expect = 9.2e-21, P = 9.2e-21
Identities = 52/84 (61%), Positives = 66/84 (78%)
Query: 17 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 76
RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+ NED
Sbjct: 470 RSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINED 529
Query: 77 GSVVRISSSQAVQRESLAKRLITP 100
GS +S+ A QRE++AK+L+TP
Sbjct: 530 GSRTALSAVDATQREAVAKQLLTP 553
Score = 37 (18.1 bits), Expect = 2.0e-38, Sum P(2) = 2.0e-38
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 63 PNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPE 101
P+ G ++++ E S + I+ V ++S K PE
Sbjct: 227 PHCKTGRSVVRKEHNSKLTITYPAMVHKKSGQKDAELPE 265
>RGD|620824 [details] [associations]
symbol:Polr1a "polymerase (RNA) I polypeptide A" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=ISO;IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009303 "rRNA
transcription" evidence=IDA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 RGD:620824
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0009303 GO:GO:0005736 GO:GO:0003899
eggNOG:COG0086 KO:K02999 PANTHER:PTHR19376:SF11 CTD:25885
HOGENOM:HOG000205401 HOVERGEN:HBG017741 OrthoDB:EOG41VK23
EMBL:AF025425 IPI:IPI00199160 PIR:T14103 RefSeq:NP_113960.1
UniGene:Rn.24877 ProteinModelPortal:O54889 STRING:O54889
PhosphoSite:O54889 PRIDE:O54889 GeneID:83581 KEGG:rno:83581
UCSC:RGD:620824 InParanoid:O54889 NextBio:616111
ArrayExpress:O54889 Genevestigator:O54889 Uniprot:O54889
Length = 1716
Score = 438 (159.2 bits), Expect = 1.5e-37, Sum P(2) = 1.5e-37
Identities = 102/279 (36%), Positives = 164/279 (58%)
Query: 360 EQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTT--KELIATDIMFIRSLVVPPNNLRP 417
++GY+ S + +W NE FL L LD + + F+ +VVPP+ RP
Sbjct: 259 KRGYLTPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGPESSFNPSMFFLDFIVVPPSRYRP 318
Query: 418 LSM--EQMPPVEHSRNKLYQSILYSCGSLKSV--IMAMKNK---EQSDLLSEA------- 463
++ +QM + + Q+++ ++ + +MA + K E +++ +
Sbjct: 319 INRLGDQM--FTNGQTVNLQAVMKDAVLIRKLLAVMAQEQKLPCEMTEITIDKENDSSGA 376
Query: 464 -----LKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTG 518
L + G +L +KL N W LQ +V+++ D+ +++K + G++Q+L+ K G
Sbjct: 377 IDRSFLSLLPGQSLTDKLYNIWIRLQSHVNIVFDS--DMDKLM-LEKYPGIRQILEKKEG 433
Query: 519 MIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVIN 578
+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VIN
Sbjct: 434 LFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVIN 493
Query: 579 GPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
GPNV+PGA+M+ NEDGS +S+ A QRE++AK+L+TP
Sbjct: 494 GPNVHPGASMVINEDGSRTALSAVDATQREAVAKQLLTP 532
Score = 330 (121.2 bits), Expect = 5.2e-26, P = 5.2e-26
Identities = 92/341 (26%), Positives = 162/341 (47%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P +SLG+ GLYDLA+GP + + C+TC ++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYVDSLGNPSADGLYDLALGPADSK-EVCSTCVQDFNNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHI+LP+ V N L F + LLL+ SC CH + P + L + Q+K+LD G + +L
Sbjct: 79 GHIDLPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAAIHLLVCQLKVLDVGALQAVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSR 306
E L F EE ++ + ++ + IL + K E RS VA
Sbjct: 139 ERILSRFLEETSDPSAFEIQEELEEYTSKILQNNLLGSQGAHVKNVCESRSKLVAHFWKT 198
Query: 307 HVKRK-CIFCATPINAISYQQR-KIIKSFK--IDKDN--LDQSLDKSLNKSSN-QIIRKR 359
H+ K C C T + + + K+ ++ + K + D L + + +
Sbjct: 199 HMAAKRCPHCKTGRSVVRKEHNSKLTITYPAMVHKKSGQKDAELPEGAPAAPGIDEAQMG 258
Query: 360 EQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTT--KELIATDIMFIRSLVVPPNNLRP 417
++GY+ S + +W NE FL L LD + + F+ +VVPP+ RP
Sbjct: 259 KRGYLTPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGPESSFNPSMFFLDFIVVPPSRYRP 318
Query: 418 LSM--EQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQ 456
++ +QM + + Q+++ ++ ++ M +++
Sbjct: 319 INRLGDQM--FTNGQTVNLQAVMKDAVLIRKLLAVMAQEQK 357
Score = 279 (103.3 bits), Expect = 1.9e-20, P = 1.9e-20
Identities = 52/84 (61%), Positives = 66/84 (78%)
Query: 17 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 76
RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+ NED
Sbjct: 449 RSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINED 508
Query: 77 GSVVRISSSQAVQRESLAKRLITP 100
GS +S+ A QRE++AK+L+TP
Sbjct: 509 GSRTALSAVDATQREAVAKQLLTP 532
Score = 37 (18.1 bits), Expect = 1.5e-37, Sum P(2) = 1.5e-37
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 63 PNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPE 101
P+ G ++++ E S + I+ V ++S K PE
Sbjct: 206 PHCKTGRSVVRKEHNSKLTITYPAMVHKKSGQKDAELPE 244
>UNIPROTKB|G3V7B7 [details] [associations]
symbol:Polr1a "DNA-directed RNA polymerase" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005736 "DNA-directed RNA polymerase I complex" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 RGD:620824 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:CH473957
GO:GO:0003899 OMA:CLLNETT PANTHER:PTHR19376:SF11
GeneTree:ENSGT00550000074861 UniGene:Rn.24877
Ensembl:ENSRNOT00000013587 Uniprot:G3V7B7
Length = 1716
Score = 438 (159.2 bits), Expect = 1.5e-37, Sum P(2) = 1.5e-37
Identities = 102/279 (36%), Positives = 164/279 (58%)
Query: 360 EQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTT--KELIATDIMFIRSLVVPPNNLRP 417
++GY+ S + +W NE FL L LD + + F+ +VVPP+ RP
Sbjct: 259 KRGYLTPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGPESSFNPSMFFLDFIVVPPSRYRP 318
Query: 418 LSM--EQMPPVEHSRNKLYQSILYSCGSLKSV--IMAMKNK---EQSDLLSEA------- 463
++ +QM + + Q+++ ++ + +MA + K E +++ +
Sbjct: 319 INRLGDQM--FTNGQTVNLQAVMKDAVLIRKLLAVMAQEQKLPCEMTEITIDKENDSSGA 376
Query: 464 -----LKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTG 518
L + G +L +KL N W LQ +V+++ D+ +++K + G++Q+L+ K G
Sbjct: 377 IDRSFLSLLPGQSLTDKLYNIWIRLQSHVNIVFDS--DMDKLM-LEKYPGIRQILEKKEG 433
Query: 519 MIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVIN 578
+ R++MMGKRV++A RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VIN
Sbjct: 434 LFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVIN 493
Query: 579 GPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITP 617
GPNV+PGA+M+ NEDGS +S+ A QRE++AK+L+TP
Sbjct: 494 GPNVHPGASMVINEDGSRTALSAVDATQREAVAKQLLTP 532
Score = 330 (121.2 bits), Expect = 5.2e-26, P = 5.2e-26
Identities = 92/341 (26%), Positives = 162/341 (47%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P +SLG+ GLYDLA+GP + + C+TC ++ C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYVDSLGNPSADGLYDLALGPADSK-EVCSTCVQDFNNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHI+LP+ V N L F + LLL+ SC CH + P + L + Q+K+LD G + +L
Sbjct: 79 GHIDLPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAAIHLLVCQLKVLDVGALQAVYEL 138
Query: 249 EETL--FNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSR 306
E L F EE ++ + ++ + IL + K E RS VA
Sbjct: 139 ERILSRFLEETSDPSAFEIQEELEEYTSKILQNNLLGSQGAHVKNVCESRSKLVAHFWKT 198
Query: 307 HVKRK-CIFCATPINAISYQQR-KIIKSFK--IDKDN--LDQSLDKSLNKSSN-QIIRKR 359
H+ K C C T + + + K+ ++ + K + D L + + +
Sbjct: 199 HMAAKRCPHCKTGRSVVRKEHNSKLTITYPAMVHKKSGQKDAELPEGAPAAPGIDEAQMG 258
Query: 360 EQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTT--KELIATDIMFIRSLVVPPNNLRP 417
++GY+ S + +W NE FL L LD + + F+ +VVPP+ RP
Sbjct: 259 KRGYLTPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGPESSFNPSMFFLDFIVVPPSRYRP 318
Query: 418 LSM--EQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQ 456
++ +QM + + Q+++ ++ ++ M +++
Sbjct: 319 INRLGDQM--FTNGQTVNLQAVMKDAVLIRKLLAVMAQEQK 357
Score = 279 (103.3 bits), Expect = 1.9e-20, P = 1.9e-20
Identities = 52/84 (61%), Positives = 66/84 (78%)
Query: 17 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 76
RSVI PD Y+N + IG+P+ FA LTYP PVTPWNV LR+ VINGPNV+PGA+M+ NED
Sbjct: 449 RSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINED 508
Query: 77 GSVVRISSSQAVQRESLAKRLITP 100
GS +S+ A QRE++AK+L+TP
Sbjct: 509 GSRTALSAVDATQREAVAKQLLTP 532
Score = 37 (18.1 bits), Expect = 1.5e-37, Sum P(2) = 1.5e-37
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 63 PNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPE 101
P+ G ++++ E S + I+ V ++S K PE
Sbjct: 206 PHCKTGRSVVRKEHNSKLTITYPAMVHKKSGQKDAELPE 244
>UNIPROTKB|E1BIX2 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9913
"Bos taurus" [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0005736 GO:GO:0003899
KO:K02999 OMA:CLLNETT PANTHER:PTHR19376:SF11 CTD:25885
GeneTree:ENSGT00550000074861 EMBL:DAAA02031123 IPI:IPI00714586
RefSeq:NP_001179805.1 UniGene:Bt.52712 PRIDE:E1BIX2
Ensembl:ENSBTAT00000008496 GeneID:536316 KEGG:bta:536316
NextBio:20876927 Uniprot:E1BIX2
Length = 1717
Score = 432 (157.1 bits), Expect = 1.5e-37, P = 1.5e-37
Identities = 121/386 (31%), Positives = 194/386 (50%)
Query: 253 FNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRK- 311
F EEN ++ + ++ + IL + K E +S ++ H+ K
Sbjct: 145 FLEENADPTACEIQEELEQYTIKILQNNLPGSQGAQVKNVCESKSKLISVFWKVHMTAKR 204
Query: 312 CIFCATPINAISYQQR-KIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVE 370
C C T + + + K+ ++ D + KR GY+ S +
Sbjct: 205 CPHCKTGRSVVRKEHNSKLTITYPAMVHRRADQKDSEPQGIEEAQMGKR--GYLTPSSAQ 262
Query: 371 ADFKKLWTNEHLFLKCLIPVLDTT--KELIATDIMFIRSLVVPPNNLRPLSM--EQMPPV 426
LW NE FL L L+ + + F+ LVVPP+ RP++ +QM
Sbjct: 263 EHLIALWKNEGFFLNYLFLGLEDVGMESRFNPSMFFLDFLVVPPSRYRPVNRLGDQMFTN 322
Query: 427 EHSRNK--------LYQSILYSCGS---LKSVIMAMKNKEQSD----LLSEALKGIRGDT 471
+ N L + +L L S + A +E+ D + L + G +
Sbjct: 323 GQTVNLQAVMKDVVLIRKLLALMAQEQELPSEVAAPTTEEEKDSWMAMDRSFLSQLPGQS 382
Query: 472 LNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNF 531
L ++L N W LQ +V+++ D++++ K + G++Q+L+ K G+ R++MMGKRV++
Sbjct: 383 LTDRLYNIWIRLQSHVNIVFDSEMD--KLM-MEKYPGIRQILEKKDGLFRKHMMGKRVDY 439
Query: 532 AGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQN 591
A RSVI PD Y++ + IG+P+ FA LTYP PVTPWNV LR+ VINGPN++PGA+M+ N
Sbjct: 440 AARSVICPDMYISTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNMHPGASMVIN 499
Query: 592 EDGSVVRISSSQAVQRESLAKRLITP 617
EDGS +S+S QRE++AK+L+TP
Sbjct: 500 EDGSRTALSASDLTQREAVAKQLLTP 525
Score = 326 (119.8 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 94/342 (27%), Positives = 162/342 (47%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
Y+ +E+K+LSV + +P +SLG+ GLYDLA+GP + + C+TC ++T C GH+
Sbjct: 20 YSAEELKKLSVKSITNPRYLDSLGNPSVNGLYDLALGPADSK-EVCSTCVQDFTNCSGHL 78
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHI+LP+ V N L F + LLL+ SC CH + P L + Q+++L+ G + +L
Sbjct: 79 GHIDLPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVVHLLLCQLRVLEVGALQAVYEL 138
Query: 249 EETLFN--EENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSR 306
E L+ EEN ++ + ++ + IL + K E +S ++
Sbjct: 139 ERILYRFLEENADPTACEIQEELEQYTIKILQNNLPGSQGAQVKNVCESKSKLISVFWKV 198
Query: 307 HVKRK-CIFCATPINAISYQQR-KIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYV 364
H+ K C C T + + + K+ ++ D + KR GY+
Sbjct: 199 HMTAKRCPHCKTGRSVVRKEHNSKLTITYPAMVHRRADQKDSEPQGIEEAQMGKR--GYL 256
Query: 365 MASEVEADFKKLWTNEHLFLKCLIPVLDTT--KELIATDIMFIRSLVVPPNNLRPLSM-- 420
S + LW NE FL L L+ + + F+ LVVPP+ RP++
Sbjct: 257 TPSSAQEHLIALWKNEGFFLNYLFLGLEDVGMESRFNPSMFFLDFLVVPPSRYRPVNRLG 316
Query: 421 EQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSE 462
+QM + + Q+++ ++ ++A+ +EQ +L SE
Sbjct: 317 DQM--FTNGQTVNLQAVMKDVVLIRK-LLALMAQEQ-ELPSE 354
Score = 273 (101.2 bits), Expect = 8.8e-20, P = 8.8e-20
Identities = 56/110 (50%), Positives = 75/110 (68%)
Query: 17 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 76
RSVI PD Y++ + IG+P+ FA LTYP PVTPWNV LR+ VINGPN++PGA+M+ NED
Sbjct: 442 RSVICPDMYISTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNMHPGASMVINED 501
Query: 77 GSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKIITRQEVVPEILKL 126
GS +S+S QRE++AK+L+TP + KI+ R +IL L
Sbjct: 502 GSRTALSASDLTQREAVAKQLLTPATGAPKP-QGTKIVCRHVKNGDILLL 550
>DICTYBASE|DDB_G0279193 [details] [associations]
symbol:rpb1 "RNA polymerase II core subunit"
species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA;ISS] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 dictyBase:DDB_G0279193
GO:GO:0006355 GenomeReviews:CM000152_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:AAFI02000030 GO:GO:0003899 eggNOG:COG0086 GO:GO:0005665
OMA:KVLPWST EMBL:S52651 PIR:A56823 RefSeq:XP_641735.1 STRING:P35084
PRIDE:P35084 EnsemblProtists:DDB0215406 GeneID:8621932
KEGG:ddi:DDB_G0279193 KO:K03006 ProtClustDB:CLSZ2428993
Uniprot:P35084
Length = 1727
Score = 249 (92.7 bits), Expect = 7.3e-29, Sum P(2) = 7.3e-29
Identities = 51/117 (43%), Positives = 76/117 (64%)
Query: 483 LQYNVDLLMDAKL----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
LQ++V +D ++ + +G + ++Q L GK G IR N+MGKRV+F+ R+VIT
Sbjct: 301 LQFHVATYVDNEIPGLPQAQQRSG-RPLKSIRQRLKGKEGRIRGNLMGKRVDFSARTVIT 359
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGS 595
DP L+ID +GVP A LTYP VTP+N+ +R+++ NGP+ +PGA I EDG+
Sbjct: 360 ADPNLSIDQVGVPRSIALNLTYPETVTPFNIDKMRELIRNGPSEHPGAKYIIREDGT 416
Score = 175 (66.7 bits), Expect = 3.7e-07, Sum P(3) = 3.7e-07
Identities = 33/65 (50%), Positives = 45/65 (69%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L+ID +GVP A LTYP VTP+N+ +R+++ NGP+ +PGA I
Sbjct: 352 FSARTVITADPNLSIDQVGVPRSIALNLTYPETVTPFNIDKMRELIRNGPSEHPGAKYII 411
Query: 74 NEDGS 78
EDG+
Sbjct: 412 REDGT 416
Score = 164 (62.8 bits), Expect = 7.3e-29, Sum P(2) = 7.3e-29
Identities = 37/104 (35%), Positives = 56/104 (53%)
Query: 133 EVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIE 192
E++ +SV +V P T+ + G GGL D AMG I ++ C TC +C GH GHIE
Sbjct: 27 EIRNMSVARVEHPETYEN-GKPKAGGLLDPAMGTI-DKTQRCQTCSGTMAECPGHFGHIE 84
Query: 193 LPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKL 236
L PV + F V +L+ C+ C K+ + T++ F +K+
Sbjct: 85 LAKPVFHIGFIDTVLKILRCVCYHCSKL-LTDTNEHSFRQALKI 127
Score = 40 (19.1 bits), Expect = 3.7e-07, Sum P(3) = 3.7e-07
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 374 KKLWTNEHLFLKCLIP 389
K+LWT + LF +IP
Sbjct: 574 KQLWTGKQLF-SLIIP 588
Score = 38 (18.4 bits), Expect = 3.7e-07, Sum P(3) = 3.7e-07
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 521 RQNMMGKRVNFAGRSVITP 539
+QN+ GKR+ F +S P
Sbjct: 776 QQNVEGKRIPFGFQSRTLP 794
>UNIPROTKB|G4MT89 [details] [associations]
symbol:MGG_04652 "DNA-directed RNA polymerase"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 PROSITE:PS00115
SMART:SM00663 GO:GO:0003677 GO:GO:0006366 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0043581 EMBL:CM001232 GO:GO:0003899
GO:GO:0005665 KO:K03006 RefSeq:XP_003713642.1
EnsemblFungi:MGG_04652T0 GeneID:2678092 KEGG:mgr:MGG_04652
Uniprot:G4MT89
Length = 1757
Score = 251 (93.4 bits), Expect = 1.5e-28, Sum P(2) = 1.5e-28
Identities = 93/300 (31%), Positives = 142/300 (47%)
Query: 343 SLDKSLNKSSNQIIRK----REQGYVMASEVEADFKKLWTNE--HLFLKCLIPVLDT--- 393
S + K + Q+ K RE+G M EV+ KL T E H LK IP D
Sbjct: 180 STHPDIRKKALQLYAKVEEAREEG--MKKEVK---DKLITPEQAHHILKH-IPEDDLWKM 233
Query: 394 --TKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAM 451
K+ + + + L VPP +RP S+ + R++ + Y G +I A
Sbjct: 234 GLNKDYARPEWLIVTVLPVPPPPVRP-SISVDGTSQGMRSE--DDLTYKLGD---IIRAN 287
Query: 452 KNKEQSDLLSEALKGIRGDTLNNKLQNSWHEL-QYNVDLLMD---AKLNINKTTGAHQID 507
N +Q+ + N + + EL QY+V MD A + + I
Sbjct: 288 GNVKQA----------HAEGAPNHICTEFEELLQYHVATYMDNDIASIPRSLQKSGRPIK 337
Query: 508 GLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPW 567
++ L GK G +R N+MGKRV+F+ R+VIT D +++ +GVP A+TLTYP VTP
Sbjct: 338 SIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANISLHEVGVPRSIARTLTYPETVTPH 397
Query: 568 NVTLLRKMVINGPNVYPGANMIQNEDGSVVRI------SSSQAVQRESLAKRLITPEGNY 621
N+ L + V+NGPN +PGA I DG+ + + S+Q + + + L+T G+Y
Sbjct: 398 NIDRLHQYVVNGPNEHPGAKYIVRTDGTRIDLRHVKNRGSTQLEYGQKVERHLLT--GDY 455
Score = 164 (62.8 bits), Expect = 5.6e-08, P = 5.6e-08
Identities = 40/118 (33%), Positives = 65/118 (55%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT D +++ +GVP A+TLTYP VTP N+ L + V+NGPN +PGA I
Sbjct: 361 FSARTVITGDANISLHEVGVPRSIARTLTYPETVTPHNIDRLHQYVVNGPNEHPGAKYIV 420
Query: 74 NEDGSVVRI------SSSQAVQRESLAKRLITPED---QQHRAIMKEKIITRQ-EVVP 121
DG+ + + S+Q + + + L+T + + ++ KE ++ Q V+P
Sbjct: 421 RTDGTRIDLRHVKNRGSTQLEYGQKVERHLLTGDYIIFNRQPSLHKESMMGHQVRVMP 478
Score = 159 (61.0 bits), Expect = 1.5e-28, Sum P(2) = 1.5e-28
Identities = 38/109 (34%), Positives = 55/109 (50%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+E+K +SVV V P T + T P GGL D +G ++R C TC N+ C GH G
Sbjct: 27 EEIKNMSVVHVQYPDTMDET-RTKPREGGLNDPLLGT-TDRQYKCKTCNNDMNNCPGHFG 84
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLD 238
HIEL PV + F + +L++ C C K+ + F ++L D
Sbjct: 85 HIELAKPVYHPGFINKTKKILEMVCHQCSKLLCDENNDEQFAQALRLRD 133
>ASPGD|ASPL0000054301 [details] [associations]
symbol:AN0809 species:162425 "Emericella nidulans"
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 EMBL:BN001308 GO:GO:0003677
GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:AACD01000013 GO:GO:0003899 eggNOG:COG0086 GO:GO:0005665
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 OrthoDB:EOG4J14H5
RefSeq:XP_658413.1 STRING:Q5BF71 EnsemblFungi:CADANIAT00001852
GeneID:2876587 KEGG:ani:AN0809.2 Uniprot:Q5BF71
Length = 1745
Score = 257 (95.5 bits), Expect = 2.9e-28, Sum P(2) = 2.9e-28
Identities = 51/131 (38%), Positives = 80/131 (61%)
Query: 483 LQYNVDLLMDAKLNINKTT---GAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQY++ MD + + ++ L GK G +RQN+MGKRV+F+ R+VIT
Sbjct: 310 LQYHIATYMDNDIAGQPKAMQKSNRPVKAIRSRLKGKEGRLRQNLMGKRVDFSARTVITG 369
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
DP L++D +GVP A+TLTYP VTP+N+ L+++V+NGPN +PGA I ++G + +
Sbjct: 370 DPNLSLDEVGVPKSIARTLTYPEVVTPYNIEKLQQLVMNGPNEHPGARYIVRDNGERIDL 429
Query: 600 SSSQAVQRESL 610
++ + L
Sbjct: 430 RHAKRAGGQQL 440
Score = 182 (69.1 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 34/80 (42%), Positives = 53/80 (66%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP A+TLTYP VTP+N+ L+++V+NGPN +PGA I
Sbjct: 361 FSARTVITGDPNLSLDEVGVPKSIARTLTYPEVVTPYNIEKLQQLVMNGPNEHPGARYIV 420
Query: 74 NEDGSVVRISSSQAVQRESL 93
++G + + ++ + L
Sbjct: 421 RDNGERIDLRHAKRAGGQQL 440
Score = 150 (57.9 bits), Expect = 2.9e-28, Sum P(2) = 2.9e-28
Identities = 37/111 (33%), Positives = 57/111 (51%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTI-PGGLYDLAMGPISERGDPCTTCGNNYTKCKGH 187
++ +E+K++SVV V P T + GL D +G I + + C TC +C GH
Sbjct: 24 FSPEEIKRMSVVHVEYPETMDDQRQRPRTKGLNDPRLGTIDRQWN-CETCEEGQKECPGH 82
Query: 188 IGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLD 238
GHIEL PV + F ++ LL+ C C KI TS F++ +++ D
Sbjct: 83 FGHIELATPVFHIGFLTKIKKLLETVCHNCGKIKAN-TSDPKFLDALRIRD 132
Score = 41 (19.5 bits), Expect = 5.6e-08, Sum P(3) = 5.6e-08
Identities = 16/67 (23%), Positives = 31/67 (46%)
Query: 260 LHPAQLVQLVDSHVQS-ILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATP 318
LHPA+++ V S + ++ G D + E F AQ+ SR ++ +
Sbjct: 1001 LHPAEVIPQVQSLLDRLVIVRGD---DPISKEAQESATMLFKAQLRSRLAFKRLV-TQYS 1056
Query: 319 INAISYQ 325
+N +++Q
Sbjct: 1057 MNKLAFQ 1063
Score = 39 (18.8 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 5/15 (33%), Positives = 12/15 (80%)
Query: 432 KLYQSILYSCGSLKS 446
KL +++ ++CG +K+
Sbjct: 103 KLLETVCHNCGKIKA 117
Score = 39 (18.8 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 504 HQIDGLKQMLDGKTGMIRQNMMGKRV 529
H +DG + + + + +++MMG RV
Sbjct: 449 HLMDGDVILFNRQPSLHKESMMGHRV 474
Score = 38 (18.4 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 15 PHRSVITPDPYLNI 28
P + +ITP LNI
Sbjct: 208 PEKKIITPQMALNI 221
Score = 38 (18.4 bits), Expect = 5.6e-08, Sum P(3) = 5.6e-08
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 330 IKSFKIDKDNLDQSLDKSLNKSSNQII 356
I+ +K D+D+ D D +L K ++
Sbjct: 1262 IQDYKEDEDDDDIEYDVTLKKLEQHLL 1288
>ZFIN|ZDB-GENE-041008-78 [details] [associations]
symbol:polr2a "polymerase (RNA) II (DNA directed)
polypeptide A" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 ZFIN:ZDB-GENE-041008-78 GO:GO:0003677
GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
GO:GO:0005665 GeneTree:ENSGT00700000104490 EMBL:AL929346
IPI:IPI00608319 Ensembl:ENSDART00000077495 Bgee:F1Q9K4
Uniprot:F1Q9K4
Length = 1965
Score = 242 (90.2 bits), Expect = 1.5e-27, Sum P(2) = 1.5e-27
Identities = 66/195 (33%), Positives = 102/195 (52%)
Query: 403 MFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSE 462
M + L VPP +RP + Q +RN+ + + + + +K EQS +
Sbjct: 245 MIVTVLPVPPLAVRPAVVMQ----GSARNQ--DDLTHKLADIVKINNQLKRNEQSGAAAH 298
Query: 463 ALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKL-NINKTT--GAHQIDGLKQMLDGKTGM 519
I D KL LQ++V ++D +L + + + +KQ L GK G
Sbjct: 299 V---IAEDV---KL------LQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGR 346
Query: 520 IRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVING 579
+R N+MGKRV+F+ R+VITPDP L ID +GVP A +T+P VTP+N+ L+++V G
Sbjct: 347 VRGNLMGKRVDFSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRG 406
Query: 580 PNVYPGANMIQNEDG 594
+ YPGA I ++G
Sbjct: 407 NSQYPGAKYIIRDNG 421
Score = 160 (61.4 bits), Expect = 1.5e-27, Sum P(2) = 1.5e-27
Identities = 37/96 (38%), Positives = 50/96 (52%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E+K++SV + + P T G GGL D G I ER C TC N T+C GH GH
Sbjct: 28 ELKRMSVTEGGIKYPETTEG-GRPKLGGLMDPRQGVI-ERSGRCQTCAGNMTECPGHFGH 85
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATS 226
IEL PV + F + +L+ CF C K+ + A +
Sbjct: 86 IELAKPVFHVGFITKIMKVLRCVCFFCSKLLVDANN 121
Score = 155 (59.6 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 30/64 (46%), Positives = 42/64 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A +T+P VTP+N+ L+++V G + YPGA I
Sbjct: 358 FSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYII 417
Query: 74 NEDG 77
++G
Sbjct: 418 RDNG 421
Score = 48 (22.0 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 324 YQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKR--EQGYVMASEVEADFKKLWT 378
Y QR++IKS +++ D ++ S NQ+++ R E G +A E +F+ + T
Sbjct: 856 YIQRRLIKSM----ESVMVKYDATVRNSINQVVQLRYGEDG--LAGEA-VEFQNMAT 905
Score = 39 (18.8 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 492 DAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRV 529
D L I H DG + + + + + +MMG RV
Sbjct: 434 DLHLQIGYKVERHMCDGDIIVFNRQPTLHKMSMMGHRV 471
>WB|WBGene00000123 [details] [associations]
symbol:ama-1 species:6239 "Caenorhabditis elegans"
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA;IMP] [GO:0009792 "embryo development ending in birth
or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0010458 "exit from mitosis" evidence=IMP]
[GO:0008356 "asymmetric cell division" evidence=IMP] [GO:0032502
"developmental process" evidence=IMP] [GO:0006479 "protein
methylation" evidence=IMP] [GO:0007369 "gastrulation" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0001055 "RNA polymerase II
activity" evidence=IMP] [GO:0042789 "mRNA transcription from RNA
polymerase II promoter" evidence=IMP] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 GO:GO:0005634
GO:GO:0009792 GO:GO:0040010 GO:GO:0007052 GO:GO:0010458
GO:GO:0046872 GO:GO:0003677 GO:GO:0000003 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0006479 GO:GO:0008356 GO:GO:0007369
GO:GO:0042789 EMBL:FO081153 eggNOG:COG0086 GO:GO:0005665
EMBL:M29235 PIR:A34092 PIR:T29959 RefSeq:NP_500523.4 IntAct:P16356
STRING:P16356 PaxDb:P16356 EnsemblMetazoa:F36A4.7.1
EnsemblMetazoa:F36A4.7.2 GeneID:177190 KEGG:cel:CELE_F36A4.7
UCSC:F36A4.7 CTD:247749 WormBase:F36A4.7
GeneTree:ENSGT00700000104490 HOGENOM:HOG000222975 InParanoid:P16356
OMA:KVLPWST NextBio:895720 GO:GO:0001055 Uniprot:P16356
Length = 1856
Score = 241 (89.9 bits), Expect = 2.2e-27, Sum P(2) = 2.2e-27
Identities = 54/118 (45%), Positives = 75/118 (63%)
Query: 483 LQYNVDLLMDAKL-NINKTT--GAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQ++V L+D + + T G + +KQ L GK G IR N+MGKRV+F+ R+VIT
Sbjct: 304 LQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITA 363
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L ID++GVP A+ LT+P VTP+NV L+++V G YPGA I E+G+ V
Sbjct: 364 DPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAKYIIRENGARV 421
Score = 159 (61.0 bits), Expect = 2.2e-27, Sum P(2) = 2.2e-27
Identities = 35/91 (38%), Positives = 47/91 (51%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHI 191
+E+K++SV V P + + G GGL D G I RG C TC N T C GH GH+
Sbjct: 26 EEIKRMSVAHVEFPEVYEN-GKPKLGGLMDPRQGVIDRRGR-CMTCAGNLTDCPGHFGHL 83
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKINI 222
EL PV + F +L+ CF C ++ I
Sbjct: 84 ELAKPVFHIGFLTKTLKILRCVCFYCGRLLI 114
Score = 155 (59.6 bits), Expect = 9.1e-05, Sum P(3) = 9.1e-05
Identities = 33/67 (49%), Positives = 44/67 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L ID++GVP A+ LT+P VTP+NV L+++V G YPGA I
Sbjct: 355 FSARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAKYII 414
Query: 74 NEDGSVV 80
E+G+ V
Sbjct: 415 RENGARV 421
Score = 39 (18.8 bits), Expect = 3.5e-05, Sum P(3) = 3.5e-05
Identities = 12/47 (25%), Positives = 27/47 (57%)
Query: 415 LRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLS 461
LR LS Q+ PV + N + + ++ +++V A++ +E +++S
Sbjct: 1336 LRVLSERQIDPVRTTSNDICE--IFEVLGIEAVRKAIE-REMDNVIS 1379
Score = 37 (18.1 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 521 RQNMMGKRVNFAGRSVITP 539
+QN+ GKR+ F R P
Sbjct: 784 QQNVEGKRIPFGFRHRTLP 802
Score = 37 (18.1 bits), Expect = 3.5e-05, Sum P(3) = 3.5e-05
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 324 YQQRKIIKSFKIDKDNLDQSLDKSL 348
Y QR++IK+ + N D ++ SL
Sbjct: 853 YIQRRLIKAMESVMVNYDGTVRNSL 877
>UNIPROTKB|P16356 [details] [associations]
symbol:ama-1 "DNA-directed RNA polymerase II subunit RPB1"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 GO:GO:0005634 GO:GO:0009792
GO:GO:0040010 GO:GO:0007052 GO:GO:0010458 GO:GO:0046872
GO:GO:0003677 GO:GO:0000003 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0006479 GO:GO:0008356 GO:GO:0007369 GO:GO:0042789
EMBL:FO081153 eggNOG:COG0086 GO:GO:0005665 EMBL:M29235 PIR:A34092
PIR:T29959 RefSeq:NP_500523.4 IntAct:P16356 STRING:P16356
PaxDb:P16356 EnsemblMetazoa:F36A4.7.1 EnsemblMetazoa:F36A4.7.2
GeneID:177190 KEGG:cel:CELE_F36A4.7 UCSC:F36A4.7 CTD:247749
WormBase:F36A4.7 GeneTree:ENSGT00700000104490 HOGENOM:HOG000222975
InParanoid:P16356 OMA:KVLPWST NextBio:895720 GO:GO:0001055
Uniprot:P16356
Length = 1856
Score = 241 (89.9 bits), Expect = 2.2e-27, Sum P(2) = 2.2e-27
Identities = 54/118 (45%), Positives = 75/118 (63%)
Query: 483 LQYNVDLLMDAKL-NINKTT--GAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQ++V L+D + + T G + +KQ L GK G IR N+MGKRV+F+ R+VIT
Sbjct: 304 LQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITA 363
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVV 597
DP L ID++GVP A+ LT+P VTP+NV L+++V G YPGA I E+G+ V
Sbjct: 364 DPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAKYIIRENGARV 421
Score = 159 (61.0 bits), Expect = 2.2e-27, Sum P(2) = 2.2e-27
Identities = 35/91 (38%), Positives = 47/91 (51%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHI 191
+E+K++SV V P + + G GGL D G I RG C TC N T C GH GH+
Sbjct: 26 EEIKRMSVAHVEFPEVYEN-GKPKLGGLMDPRQGVIDRRGR-CMTCAGNLTDCPGHFGHL 83
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKINI 222
EL PV + F +L+ CF C ++ I
Sbjct: 84 ELAKPVFHIGFLTKTLKILRCVCFYCGRLLI 114
Score = 155 (59.6 bits), Expect = 9.1e-05, Sum P(3) = 9.1e-05
Identities = 33/67 (49%), Positives = 44/67 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L ID++GVP A+ LT+P VTP+NV L+++V G YPGA I
Sbjct: 355 FSARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAKYII 414
Query: 74 NEDGSVV 80
E+G+ V
Sbjct: 415 RENGARV 421
Score = 39 (18.8 bits), Expect = 3.5e-05, Sum P(3) = 3.5e-05
Identities = 12/47 (25%), Positives = 27/47 (57%)
Query: 415 LRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLS 461
LR LS Q+ PV + N + + ++ +++V A++ +E +++S
Sbjct: 1336 LRVLSERQIDPVRTTSNDICE--IFEVLGIEAVRKAIE-REMDNVIS 1379
Score = 37 (18.1 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 521 RQNMMGKRVNFAGRSVITP 539
+QN+ GKR+ F R P
Sbjct: 784 QQNVEGKRIPFGFRHRTLP 802
Score = 37 (18.1 bits), Expect = 3.5e-05, Sum P(3) = 3.5e-05
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 324 YQQRKIIKSFKIDKDNLDQSLDKSL 348
Y QR++IK+ + N D ++ SL
Sbjct: 853 YIQRRLIKAMESVMVNYDGTVRNSL 877
>POMBASE|SPBC28F2.12 [details] [associations]
symbol:rpb1 "RNA polymerase II large subunit Rpb1"
species:4896 "Schizosaccharomyces pombe" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IC] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IC] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 PomBase:SPBC28F2.12 GO:GO:0005829
GO:GO:0046872 GO:GO:0003677 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 GO:GO:0005665 PDB:3H0G PDBsum:3H0G
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 EMBL:X56564 PIR:S26849
RefSeq:NP_595673.1 ProteinModelPortal:P36594 IntAct:P36594
MINT:MINT-1214221 STRING:P36594 EnsemblFungi:SPBC28F2.12.1
GeneID:2540292 KEGG:spo:SPBC28F2.12 OrthoDB:EOG4J14H5
EvolutionaryTrace:P36594 NextBio:20801422 Uniprot:P36594
Length = 1752
Score = 238 (88.8 bits), Expect = 2.5e-27, Sum P(2) = 2.5e-27
Identities = 49/115 (42%), Positives = 72/115 (62%)
Query: 483 LQYNVDLLMDAKLNINKTT---GAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQ++V MD ++ + ++ L GK G +R N+MGKRV+F+ R+VIT
Sbjct: 302 LQFHVATYMDNEIAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITG 361
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDG 594
DP L++D +GVP AKTLTYP VTP+N+ L+++V NGP+ +PGA I + G
Sbjct: 362 DPNLSLDELGVPRSIAKTLTYPETVTPYNIYQLQELVRNGPDEHPGAKYIIRDTG 416
Score = 171 (65.3 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 33/64 (51%), Positives = 45/64 (70%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP AKTLTYP VTP+N+ L+++V NGP+ +PGA I
Sbjct: 353 FSARTVITGDPNLSLDELGVPRSIAKTLTYPETVTPYNIYQLQELVRNGPDEHPGAKYII 412
Query: 74 NEDG 77
+ G
Sbjct: 413 RDTG 416
Score = 161 (61.7 bits), Expect = 2.5e-27, Sum P(2) = 2.5e-27
Identities = 35/97 (36%), Positives = 53/97 (54%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+E++ +SV K+ P T + G P GGL D +G I +R C TCG C GH G
Sbjct: 27 EEIRSMSVAKIEFPETMDESGQR-PRVGGLLDPRLGTI-DRQFKCQTCGETMADCPGHFG 84
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATS 226
HIEL PV + F ++ +L+ C+ C K+ I +++
Sbjct: 85 HIELAKPVFHIGFLSKIKKILECVCWNCGKLKIDSSN 121
Score = 45 (20.9 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 475 KLQNSWHELQYNVDLLMDAKLNINKTTGAHQIDGLKQMLD 514
+L E +Y +DL+ D L++ ++ +LD
Sbjct: 893 RLSTKQFEKKYRIDLMEDRSLSLYMENSIENDSSVQDLLD 932
Score = 43 (20.2 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 12/49 (24%), Positives = 26/49 (53%)
Query: 326 QRKIIKSFKIDKDNLDQSLDKSLNKSSN--QIIRKREQG-YVMASEVEA 371
+ K+ + +DN +S + SL S+N Q++ +G ++ S++ A
Sbjct: 721 EAKVSRILNQARDNAGRSAEHSLKDSNNVKQMVAAGSKGSFINISQMSA 769
Score = 38 (18.4 bits), Expect = 3.3e-07, Sum P(3) = 3.3e-07
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 445 KSVIMAMKNKEQSDLLSEALKGIRGDTLNN 474
K ++ NK ++ + L G+R +L +
Sbjct: 515 KQIVSPQSNKPVMGIVQDTLAGVRKFSLRD 544
Score = 38 (18.4 bits), Expect = 5.2e-07, Sum P(3) = 5.2e-07
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 426 VEHSRNKLYQSILYSCGSLKSVIMAMK-NK 454
V+++ L+Q +L S ++K VIM + NK
Sbjct: 1013 VQNNATLLFQILLRSKFAVKRVIMEYRLNK 1042
>UNIPROTKB|Q6NX41 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
SMART:SM00663 GO:GO:0003677 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 EMBL:AC113189 GO:GO:0003899 IPI:IPI00031627
UniGene:Hs.270017 HGNC:HGNC:9187 ChiTaRS:POLR2A EMBL:BC067295
SMR:Q6NX41 STRING:Q6NX41 Ensembl:ENST00000572844 UCSC:uc002ghe.3
HOVERGEN:HBG097653 Uniprot:Q6NX41
Length = 566
Score = 234 (87.4 bits), Expect = 3.0e-27, Sum P(2) = 3.0e-27
Identities = 64/195 (32%), Positives = 103/195 (52%)
Query: 403 MFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSE 462
M + L VPP ++RP + Q +RN+ + + + + ++ EQ+ +
Sbjct: 248 MIVTVLPVPPLSVRPAVVMQ----GSARNQ--DDLTHKLADIVKINNQLRRNEQNGAAAH 301
Query: 463 ALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKL-NINKTT--GAHQIDGLKQMLDGKTGM 519
I D KL LQ++V ++D +L + + + LKQ L GK G
Sbjct: 302 V---IAEDV---KL------LQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGR 349
Query: 520 IRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVING 579
+R N+MGKRV+F+ R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G
Sbjct: 350 VRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRG 409
Query: 580 PNVYPGANMIQNEDG 594
+ YPGA I ++G
Sbjct: 410 NSQYPGAKYIIRDNG 424
Score = 150 (57.9 bits), Expect = 3.0e-27, Sum P(2) = 3.0e-27
Identities = 36/96 (37%), Positives = 49/96 (51%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E+K++SV + + P T G GGL D G I ER C TC N T+C GH GH
Sbjct: 30 ELKRMSVTEGGIKYPETTEG-GRPKLGGLMDPRQGVI-ERTGRCQTCAGNMTECPGHFGH 87
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATS 226
IEL PV + F +L+ CF C K+ + + +
Sbjct: 88 IELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNN 123
Score = 148 (57.2 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 29/64 (45%), Positives = 42/64 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I
Sbjct: 361 FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII 420
Query: 74 NEDG 77
++G
Sbjct: 421 RDNG 424
Score = 43 (20.2 bits), Expect = 8.3e-07, Sum P(2) = 8.3e-07
Identities = 25/134 (18%), Positives = 50/134 (37%)
Query: 492 DAKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVI-----TPDPYLNID 546
D L H DG + + + + + +MMG RV S PY N D
Sbjct: 437 DLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPY-NAD 495
Query: 547 SIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQ 606
G + + + ++ +M++ + P ++Q+ +V + + +
Sbjct: 496 FDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFT-----K 550
Query: 607 RESLAKRLITPEGN 620
R+ +R+ P GN
Sbjct: 551 RDVFLERVCGPNGN 564
>CGD|CAL0002215 [details] [associations]
symbol:orf19.3103 species:5476 "Candida albicans" [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 CGD:CAL0002215 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 EMBL:AACQ01000086 KO:K03018 eggNOG:COG0086
GO:GO:0032549 PANTHER:PTHR19376:SF15 RefSeq:XP_715412.1
ProteinModelPortal:Q5A0Z3 STRING:Q5A0Z3 GeneID:3642908
KEGG:cal:CaO19.3103 Uniprot:Q5A0Z3
Length = 1448
Score = 256 (95.2 bits), Expect = 4.2e-27, Sum P(2) = 4.2e-27
Identities = 58/137 (42%), Positives = 83/137 (60%)
Query: 467 IRGDTLNNKLQNSWHELQYNVDLLMDA-KLNINKTTG------AHQIDGLKQMLDGKTGM 519
++G ++NN L W LQ +V + +++ N +TG + I Q L GK G
Sbjct: 301 VKGISINN-LMEQWDYLQLSVAMYINSDSANPALSTGGGGAKSSKPIRAFCQRLKGKQGR 359
Query: 520 IRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVING 579
R N+ GKRV+F+GR+VI+PDP L ID + VP AK LTYP T +N L+K+V+NG
Sbjct: 360 FRGNLSGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQKLVVNG 419
Query: 580 PNVYPGANMI--QNEDG 594
P+++PGAN + QNE G
Sbjct: 420 PDIHPGANYVMKQNEPG 436
Score = 172 (65.6 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 34/66 (51%), Positives = 45/66 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI- 72
F R+VI+PDP L ID + VP AK LTYP T +N L+K+V+NGP+++PGAN +
Sbjct: 371 FSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQKLVVNGPDIHPGANYVM 430
Query: 73 -QNEDG 77
QNE G
Sbjct: 431 KQNEPG 436
Score = 138 (53.6 bits), Expect = 4.2e-27, Sum P(2) = 4.2e-27
Identities = 34/132 (25%), Positives = 67/132 (50%)
Query: 109 MKEKIITRQEVVPEILK-LKY--YTDQEVKQLSVVKVFSPITFNSLGHTIPG--GLYDLA 163
MKE ++ ++ P+ +K L++ + +++ S V++ + ++ +P G D
Sbjct: 1 MKEVVV---DIAPKCIKGLEFGALSAKDIVAQSEVEIQTRDLYDLEKGRVPKEHGALDTK 57
Query: 164 MGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIP 223
MG IS C+TC N C GH GHI L +PV + +F+ + +L+ C C + +
Sbjct: 58 MG-ISSNAQECSTCHGNLASCHGHFGHIRLALPVFHVGYFKSIISVLQCICKSCAAVLLD 116
Query: 224 ATSQLLFINQIK 235
S+ ++N ++
Sbjct: 117 EQSKRQYLNDLR 128
Score = 47 (21.6 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 15/64 (23%), Positives = 30/64 (46%)
Query: 324 YQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQG-----YVMASEVE-ADFKKLW 377
Y R+++KS ++L D ++ SSN I++ G Y M + + +F + W
Sbjct: 879 YMSRRLMKSL----EDLSSQYDNTVRNSSNGIVQFTYGGDGLDPYDMEGDAKPVNFNRQW 934
Query: 378 TNEH 381
+ +
Sbjct: 935 DHAY 938
Score = 43 (20.2 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 225 TSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVD 270
T+ +L +NQI ++A + K+++ T+ N + + P + L D
Sbjct: 1306 TNHVLEVNQILGIEAARGSIIKEIDYTMSNH-GMSVDPRHIQLLGD 1350
Score = 39 (18.8 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 253 FNEENLRLHPAQLVQLVDS 271
+N ++ L P Q+ +LVDS
Sbjct: 942 YNVDDASLLPYQIEELVDS 960
>ZFIN|ZDB-GENE-050208-103 [details] [associations]
symbol:polr3a "polymerase (RNA) III (DNA directed)
polypeptide A" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
ZFIN:ZDB-GENE-050208-103 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
KO:K03018 GO:GO:0032549 GeneTree:ENSGT00700000104490
PANTHER:PTHR19376:SF15 EMBL:CABZ01084340 EMBL:CABZ01084341
EMBL:CABZ01084342 EMBL:CABZ01084343 EMBL:CABZ01084344
EMBL:CABZ01084345 EMBL:CABZ01084346 IPI:IPI00960980
RefSeq:XP_003199716.1 UniGene:Dr.109694 Ensembl:ENSDART00000105273
GeneID:572258 KEGG:dre:572258 NextBio:20890901 Bgee:E7F5P2
Uniprot:E7F5P2
Length = 1390
Score = 250 (93.1 bits), Expect = 5.2e-27, Sum P(2) = 5.2e-27
Identities = 58/141 (41%), Positives = 79/141 (56%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
+ W LQ L ++++L+ A + G Q L GK G R N+ GKRV+F+G
Sbjct: 306 IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNED 593
R+VI+PDP L ID + VP+ AK LTYP V N+ L+RK+V NGP V+PGAN IQ
Sbjct: 366 RTVISPDPNLRIDEVAVPVHVAKILTYPEKVNKANIELMRKLVRNGPEVHPGANFIQQRH 425
Query: 594 GSVVRISSSQAVQRESLAKRL 614
+ R RE +A+ L
Sbjct: 426 MQMKRFLKYG--NREKMAQEL 444
Score = 180 (68.4 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 39/84 (46%), Positives = 50/84 (59%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP+ AK LTYP V N+ L+RK+V NGP V+PGAN IQ
Sbjct: 363 FSGRTVISPDPNLRIDEVAVPVHVAKILTYPEKVNKANIELMRKLVRNGPEVHPGANFIQ 422
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ R RE +A+ L
Sbjct: 423 QRHMQMKRFLKYG--NREKMAQEL 444
Score = 143 (55.4 bits), Expect = 5.2e-27, Sum P(2) = 5.2e-27
Identities = 32/125 (25%), Positives = 67/125 (53%)
Query: 130 TDQEVKQLSVVKVFSPITFNS-LGHT-IPGGLYDLAMGPISERGDPCTTCGNNYTKCKGH 187
+ ++++Q + ++V S ++ H + G+ D MG SE+ PC TCG N C GH
Sbjct: 24 SSEQMRQQAHIQVVSKNLYSQDTSHKPLQYGVLDHRMGT-SEKDRPCETCGKNLADCLGH 82
Query: 188 IGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKD 247
G+++L +P + +F+ + +L++ C C I + +L F++ ++ Y+ Q +
Sbjct: 83 YGYLDLELPCFHIGYFKAIVGILQMICKTCSHILLTKEEKLQFLDYLRRPGLAYL-QKRG 141
Query: 248 LEETL 252
L++ +
Sbjct: 142 LKKKI 146
Score = 46 (21.3 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 22/90 (24%), Positives = 39/90 (43%)
Query: 324 YQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQG-----YVMASEVEA-DFKKLW 377
Y QR+++KS ++L D ++ S+ II+ G M + E +FK++
Sbjct: 870 YMQRRLVKSL----EDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVL 925
Query: 378 TNEHLFLKCL-IPVLDTTKELIATDIMFIR 406
N C P L + L+ +D + R
Sbjct: 926 DNIRAVYSCTGEPALSRNELLLTSDSIMKR 955
Score = 37 (18.1 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 329 IIKSFKIDKDNLDQSLDKSLNKSSNQII 356
I+K + +D+ + + L+KS++ +I
Sbjct: 752 ILKELSVIRDHAGSACLRELDKSNSPLI 779
>CGD|CAL0000919 [details] [associations]
symbol:RPO21 species:5476 "Candida albicans" [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0009267 "cellular response to starvation"
evidence=IMP] [GO:0036170 "filamentous growth of a population of
unicellular organisms in response to starvation" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0071216
"cellular response to biotic stimulus" evidence=IMP] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0003968 "RNA-directed RNA
polymerase activity" evidence=IEA] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 CGD:CAL0000919
GO:GO:0071216 GO:GO:0036180 GO:GO:0003677 GO:GO:0006366
GO:GO:0009267 Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:AACQ01000032 GO:GO:0036170 GO:GO:0003899 eggNOG:COG0086
GO:GO:0005665 KO:K03006 RefSeq:XP_719414.1 STRING:Q5ACI7
GeneID:3638991 KEGG:cal:CaO19.7655 Uniprot:Q5ACI7
Length = 1728
Score = 243 (90.6 bits), Expect = 6.0e-27, Sum P(2) = 6.0e-27
Identities = 51/116 (43%), Positives = 74/116 (63%)
Query: 483 LQYNVDLLMDAKL----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
LQ++V MD + + TG I ++ L GK G +R N+MGKRV+F+ R+VI+
Sbjct: 296 LQFHVATYMDNDIAGQPQALQKTG-RPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVIS 354
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDG 594
DP L++D +GVP+ AKTLTYP VTP+N+ L ++V NGPN +PGA + + G
Sbjct: 355 GDPNLDLDQVGVPISIAKTLTYPEIVTPYNIHKLTELVRNGPNEHPGAKYVIRDTG 410
Score = 172 (65.6 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 32/64 (50%), Positives = 45/64 (70%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+ DP L++D +GVP+ AKTLTYP VTP+N+ L ++V NGPN +PGA +
Sbjct: 347 FSARTVISGDPNLDLDQVGVPISIAKTLTYPEIVTPYNIHKLTELVRNGPNEHPGAKYVI 406
Query: 74 NEDG 77
+ G
Sbjct: 407 RDTG 410
Score = 152 (58.6 bits), Expect = 6.0e-27, Sum P(2) = 6.0e-27
Identities = 44/140 (31%), Positives = 71/140 (50%)
Query: 132 QEVKQLSVVKVFSPITFN-SLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
+EV+ +SV K+ P T + + GGL D +G I +R C TCG + +C GH GH
Sbjct: 26 EEVRAISVAKIEYPETMDQTTKRPREGGLNDPRLGSI-DRNFRCQTCGEDMAECPGHFGH 84
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINI----PATSQLLFINQIKL-LDAGY-VTQ 244
IEL PV + F ++ + C C K+ + PA +Q + I K +A + + +
Sbjct: 85 IELAKPVFHIGFIAKIKKACESVCMHCGKLLLDETNPAMAQAIKIRDPKKRFNAVWSLCK 144
Query: 245 AKDLEETLFNEENLRLHPAQ 264
K + ET NE+ + P++
Sbjct: 145 TKMVCETDNNEDEMTDQPSR 164
Score = 43 (20.2 bits), Expect = 4.9e-07, Sum P(3) = 4.9e-07
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 457 SDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAK 494
S+ L E+ K IRGD +LQ E +YN LL D K
Sbjct: 909 SESLLESGKEIRGDV---QLQKILDE-EYN-QLLKDRK 941
Score = 40 (19.1 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 13/52 (25%), Positives = 23/52 (44%)
Query: 423 MPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNN 474
+P +R++L Q C ++ NK ++ + L GIR TL +
Sbjct: 491 VPQSPETRSELSQI----CAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRD 538
Score = 39 (18.8 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 8/42 (19%), Positives = 23/42 (54%)
Query: 327 RKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASE 368
R++I+ FK+++ + + + + + I+ E V+A++
Sbjct: 1030 RRVIEEFKLNRASFEWVMGEIETQFQKSIVHPGEMVGVVAAQ 1071
Score = 37 (18.1 bits), Expect = 5.9e-15, Sum P(2) = 5.9e-15
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 15 PHRSVITPDPYLNI 28
P R ++TP LN+
Sbjct: 197 PERRLLTPSEILNV 210
Score = 37 (18.1 bits), Expect = 4.9e-07, Sum P(3) = 4.9e-07
Identities = 14/68 (20%), Positives = 28/68 (41%)
Query: 272 HVQSILAHGTKICDINDYKGGEELRSAFVAQV----LSRHVKRK-------CIFCATPIN 320
H S++AH ++ + ++ + S + A ++ HV + CA P+
Sbjct: 451 HKMSMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSPETRSELSQICAVPLQ 510
Query: 321 AISYQQRK 328
+S Q K
Sbjct: 511 IVSPQSNK 518
Score = 37 (18.1 bits), Expect = 1.9e-06, Sum P(3) = 1.9e-06
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 341 DQSLDKSLNKSSNQIIRKRE 360
D L K L++ NQ+++ R+
Sbjct: 922 DVQLQKILDEEYNQLLKDRK 941
>UNIPROTKB|Q5ACI7 [details] [associations]
symbol:RPO21 "DNA-directed RNA polymerase" species:237561
"Candida albicans SC5314" [GO:0009267 "cellular response to
starvation" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0036170 "filamentous growth of a population of
unicellular organisms in response to starvation" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0071216
"cellular response to biotic stimulus" evidence=IMP]
InterPro:IPR000684 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007073 InterPro:IPR007075
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
Pfam:PF00623 Pfam:PF04983 Pfam:PF04990 Pfam:PF04992 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 Pfam:PF05001 PROSITE:PS00115
SMART:SM00663 CGD:CAL0000919 GO:GO:0071216 GO:GO:0036180
GO:GO:0003677 GO:GO:0006366 GO:GO:0009267 Gene3D:2.40.40.20
InterPro:IPR009010 EMBL:AACQ01000032 GO:GO:0036170 GO:GO:0003899
eggNOG:COG0086 GO:GO:0005665 KO:K03006 RefSeq:XP_719414.1
STRING:Q5ACI7 GeneID:3638991 KEGG:cal:CaO19.7655 Uniprot:Q5ACI7
Length = 1728
Score = 243 (90.6 bits), Expect = 6.0e-27, Sum P(2) = 6.0e-27
Identities = 51/116 (43%), Positives = 74/116 (63%)
Query: 483 LQYNVDLLMDAKL----NINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVIT 538
LQ++V MD + + TG I ++ L GK G +R N+MGKRV+F+ R+VI+
Sbjct: 296 LQFHVATYMDNDIAGQPQALQKTG-RPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVIS 354
Query: 539 PDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDG 594
DP L++D +GVP+ AKTLTYP VTP+N+ L ++V NGPN +PGA + + G
Sbjct: 355 GDPNLDLDQVGVPISIAKTLTYPEIVTPYNIHKLTELVRNGPNEHPGAKYVIRDTG 410
Score = 172 (65.6 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 32/64 (50%), Positives = 45/64 (70%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+ DP L++D +GVP+ AKTLTYP VTP+N+ L ++V NGPN +PGA +
Sbjct: 347 FSARTVISGDPNLDLDQVGVPISIAKTLTYPEIVTPYNIHKLTELVRNGPNEHPGAKYVI 406
Query: 74 NEDG 77
+ G
Sbjct: 407 RDTG 410
Score = 152 (58.6 bits), Expect = 6.0e-27, Sum P(2) = 6.0e-27
Identities = 44/140 (31%), Positives = 71/140 (50%)
Query: 132 QEVKQLSVVKVFSPITFN-SLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
+EV+ +SV K+ P T + + GGL D +G I +R C TCG + +C GH GH
Sbjct: 26 EEVRAISVAKIEYPETMDQTTKRPREGGLNDPRLGSI-DRNFRCQTCGEDMAECPGHFGH 84
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINI----PATSQLLFINQIKL-LDAGY-VTQ 244
IEL PV + F ++ + C C K+ + PA +Q + I K +A + + +
Sbjct: 85 IELAKPVFHIGFIAKIKKACESVCMHCGKLLLDETNPAMAQAIKIRDPKKRFNAVWSLCK 144
Query: 245 AKDLEETLFNEENLRLHPAQ 264
K + ET NE+ + P++
Sbjct: 145 TKMVCETDNNEDEMTDQPSR 164
Score = 43 (20.2 bits), Expect = 4.9e-07, Sum P(3) = 4.9e-07
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 457 SDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAK 494
S+ L E+ K IRGD +LQ E +YN LL D K
Sbjct: 909 SESLLESGKEIRGDV---QLQKILDE-EYN-QLLKDRK 941
Score = 40 (19.1 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 13/52 (25%), Positives = 23/52 (44%)
Query: 423 MPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNN 474
+P +R++L Q C ++ NK ++ + L GIR TL +
Sbjct: 491 VPQSPETRSELSQI----CAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRD 538
Score = 39 (18.8 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 8/42 (19%), Positives = 23/42 (54%)
Query: 327 RKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASE 368
R++I+ FK+++ + + + + + I+ E V+A++
Sbjct: 1030 RRVIEEFKLNRASFEWVMGEIETQFQKSIVHPGEMVGVVAAQ 1071
Score = 37 (18.1 bits), Expect = 5.9e-15, Sum P(2) = 5.9e-15
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 15 PHRSVITPDPYLNI 28
P R ++TP LN+
Sbjct: 197 PERRLLTPSEILNV 210
Score = 37 (18.1 bits), Expect = 4.9e-07, Sum P(3) = 4.9e-07
Identities = 14/68 (20%), Positives = 28/68 (41%)
Query: 272 HVQSILAHGTKICDINDYKGGEELRSAFVAQV----LSRHVKRK-------CIFCATPIN 320
H S++AH ++ + ++ + S + A ++ HV + CA P+
Sbjct: 451 HKMSMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSPETRSELSQICAVPLQ 510
Query: 321 AISYQQRK 328
+S Q K
Sbjct: 511 IVSPQSNK 518
Score = 37 (18.1 bits), Expect = 1.9e-06, Sum P(3) = 1.9e-06
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 341 DQSLDKSLNKSSNQIIRKRE 360
D L K L++ NQ+++ R+
Sbjct: 922 DVQLQKILDEEYNQLLKDRK 941
>FB|FBgn0030687 [details] [associations]
symbol:CG17209 species:7227 "Drosophila melanogaster"
[GO:0006383 "transcription from RNA polymerase III promoter"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=ISS] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 EMBL:AE014298 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 KO:K03018
GO:GO:0032549 GeneTree:ENSGT00700000104490 OMA:PRRPLIF
PANTHER:PTHR19376:SF15 RefSeq:NP_001096987.2 UniGene:Dm.14839
ProteinModelPortal:A8JUY3 SMR:A8JUY3 STRING:A8JUY3
EnsemblMetazoa:FBtr0300811 GeneID:32524 KEGG:dme:Dmel_CG17209
FlyBase:FBgn0030687 OrthoDB:EOG4BNZSM PhylomeDB:A8JUY3
GenomeRNAi:32524 NextBio:778916 Bgee:A8JUY3 Uniprot:A8JUY3
Length = 1383
Score = 247 (92.0 bits), Expect = 6.7e-27, Sum P(2) = 6.7e-27
Identities = 56/142 (39%), Positives = 83/142 (58%)
Query: 476 LQNSWHELQYNVDLLMDAKLN---INKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFA 532
+ W LQ +V L ++++ IN G+ Q L GK G R N+ GKRV+F+
Sbjct: 305 IHEDWDFLQLHVALYFHSEISGIPINMAP-KKTTRGIVQRLKGKQGRFRCNLSGKRVDFS 363
Query: 533 GRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNE 592
GR+VI+PDP L I+ +GVP+ AK LTYP V P N+ +R++V NGP+++PGAN +Q
Sbjct: 364 GRTVISPDPNLMINQVGVPVRVAKILTYPERVNPANIRHMRELVRNGPSMHPGANYVQQR 423
Query: 593 DGSVVRISSSQAVQRESLAKRL 614
S + + RE +A+ L
Sbjct: 424 GSSFKKYLAYG--NREKVAQEL 443
Score = 172 (65.6 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
Identities = 36/84 (42%), Positives = 53/84 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L I+ +GVP+ AK LTYP V P N+ +R++V NGP+++PGAN +Q
Sbjct: 362 FSGRTVISPDPNLMINQVGVPVRVAKILTYPERVNPANIRHMRELVRNGPSMHPGANYVQ 421
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
S + + RE +A+ L
Sbjct: 422 QRGSSFKKYLAYG--NREKVAQEL 443
Score = 145 (56.1 bits), Expect = 6.7e-27, Sum P(2) = 6.7e-27
Identities = 31/97 (31%), Positives = 53/97 (54%)
Query: 133 EVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIE 192
E++Q ++V++ S + + +P G+ D MG IS + C TCG +C GH G+++
Sbjct: 27 EIQQEALVRIISKNLYQAQRQPVPYGVLDRRMG-ISTKDAMCETCGQGLNECIGHFGYLD 85
Query: 193 LPVPVINTLFFRDVQLLLKLSCFLC-HKINIPATSQL 228
L +PV + FR +L++ C +C H + P QL
Sbjct: 86 LALPVFHIGHFRSTINILQMICKVCAHVMLKPEDRQL 122
Score = 52 (23.4 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 198 INTLFFRDVQLLLKLS-CF-LCHKINIPATSQLL-FINQI 234
INT+ R QL + C LCH+I T QLL F+ +I
Sbjct: 971 INTVSKRIGQLQKRYEKCIDLCHQIECLTTEQLLQFVRRI 1010
>UNIPROTKB|F1NIK7 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=IEA] [GO:0045087
"innate immune response" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0045087 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 GO:GO:0032728 GO:GO:0032549
GeneTree:ENSGT00700000104490 OMA:PRRPLIF PANTHER:PTHR19376:SF15
IPI:IPI00580235 EMBL:AADN02027942 EMBL:AADN02027940
EMBL:AADN02027941 Ensembl:ENSGALT00000007929 Uniprot:F1NIK7
Length = 1390
Score = 247 (92.0 bits), Expect = 7.7e-27, Sum P(3) = 7.7e-27
Identities = 59/158 (37%), Positives = 85/158 (53%)
Query: 460 LSEALKGIR-GDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGK 516
L++ +K R + W LQ L ++++L+ A + G Q L GK
Sbjct: 289 LNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGK 348
Query: 517 TGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMV 576
G R N+ GKRV+F+GR+VI+PDP L ID + VP+ AK LT+P V N+ +RK+V
Sbjct: 349 QGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPIHVAKILTFPEKVNKANINFMRKLV 408
Query: 577 INGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRL 614
NGP+V+PGAN IQ + R RE +A+ L
Sbjct: 409 RNGPDVHPGANFIQQRHTQMKRFLKYG--NREKMAQEL 444
Score = 176 (67.0 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 37/84 (44%), Positives = 50/84 (59%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP+ AK LT+P V N+ +RK+V NGP+V+PGAN IQ
Sbjct: 363 FSGRTVISPDPNLRIDEVAVPIHVAKILTFPEKVNKANINFMRKLVRNGPDVHPGANFIQ 422
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ R RE +A+ L
Sbjct: 423 QRHTQMKRFLKYG--NREKMAQEL 444
Score = 153 (58.9 bits), Expect = 7.7e-27, Sum P(3) = 7.7e-27
Identities = 36/121 (29%), Positives = 65/121 (53%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+E++Q + ++V S ++ H P G+ D MG SE+ PC TCG N C GH G
Sbjct: 26 EEMRQQAHIQVVSKNLYSQDNHHAPLQYGVLDHRMGT-SEKDRPCETCGKNLADCLGHYG 84
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLE 249
+I+L +P + +F+ V +L++ C C +I + + F++ +K Y+ Q + L+
Sbjct: 85 YIDLELPCFHVGYFKAVIGILQMICKTCCRIMLSVEEKKQFLDYLKRPGLTYL-QKRGLK 143
Query: 250 E 250
+
Sbjct: 144 K 144
Score = 41 (19.5 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 324 YQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIR 357
Y QR+++KS ++L D ++ S+ II+
Sbjct: 870 YMQRRLVKSL----EDLCSQYDLTVRSSTGDIIQ 899
Score = 38 (18.4 bits), Expect = 7.7e-27, Sum P(3) = 7.7e-27
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 388 IPVLDTTKELIATDIMFIRSLVVPPNNLRP 417
IP+L E + + L+VPP +RP
Sbjct: 235 IPLLLMNPEAGKPSDLILTRLLVPPLCIRP 264
Score = 37 (18.1 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 329 IIKSFKIDKDNLDQSLDKSLNKSSNQII 356
I+K + +D+ + + L+KS++ +I
Sbjct: 752 ILKELSVIRDHAGSACLRELDKSNSPLI 779
>UNIPROTKB|Q5ZL98 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase III subunit
RPC1" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 KO:K03018
eggNOG:COG0086 HSSP:P04050 GO:GO:0032549 HOVERGEN:HBG004339
CTD:11128 HOGENOM:HOG000222974 OrthoDB:EOG4QVCB4
PANTHER:PTHR19376:SF15 EMBL:AJ719836 IPI:IPI00580235
RefSeq:NP_001006500.1 UniGene:Gga.11367 ProteinModelPortal:Q5ZL98
STRING:Q5ZL98 PRIDE:Q5ZL98 GeneID:423727 KEGG:gga:423727
InParanoid:Q5ZL98 NextBio:20826153 Uniprot:Q5ZL98
Length = 1390
Score = 247 (92.0 bits), Expect = 7.7e-27, Sum P(3) = 7.7e-27
Identities = 59/158 (37%), Positives = 85/158 (53%)
Query: 460 LSEALKGIR-GDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGK 516
L++ +K R + W LQ L ++++L+ A + G Q L GK
Sbjct: 289 LNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGK 348
Query: 517 TGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMV 576
G R N+ GKRV+F+GR+VI+PDP L ID + VP+ AK LT+P V N+ +RK+V
Sbjct: 349 QGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPIHVAKILTFPEKVNKANINFMRKLV 408
Query: 577 INGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRL 614
NGP+V+PGAN IQ + R RE +A+ L
Sbjct: 409 RNGPDVHPGANFIQQRHTQMKRFLKYG--NREKMAQEL 444
Score = 176 (67.0 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 37/84 (44%), Positives = 50/84 (59%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP+ AK LT+P V N+ +RK+V NGP+V+PGAN IQ
Sbjct: 363 FSGRTVISPDPNLRIDEVAVPIHVAKILTFPEKVNKANINFMRKLVRNGPDVHPGANFIQ 422
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ R RE +A+ L
Sbjct: 423 QRHTQMKRFLKYG--NREKMAQEL 444
Score = 153 (58.9 bits), Expect = 7.7e-27, Sum P(3) = 7.7e-27
Identities = 36/121 (29%), Positives = 65/121 (53%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+E++Q + ++V S ++ H P G+ D MG SE+ PC TCG N C GH G
Sbjct: 26 EEMRQQAHIQVVSKNLYSQDNHHAPLQYGVLDHRMGT-SEKDRPCETCGKNLADCLGHYG 84
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLE 249
+I+L +P + +F+ V +L++ C C +I + + F++ +K Y+ Q + L+
Sbjct: 85 YIDLELPCFHVGYFKAVIGILQMICKTCCRIMLSVEEKKQFLDYLKRPGLTYL-QKRGLK 143
Query: 250 E 250
+
Sbjct: 144 K 144
Score = 41 (19.5 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 324 YQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIR 357
Y QR+++KS ++L D ++ S+ II+
Sbjct: 870 YMQRRLVKSL----EDLCSQYDLTVRSSTGDIIQ 899
Score = 38 (18.4 bits), Expect = 7.7e-27, Sum P(3) = 7.7e-27
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 388 IPVLDTTKELIATDIMFIRSLVVPPNNLRP 417
IP+L E + + L+VPP +RP
Sbjct: 235 IPLLLMNPEAGKPSDLILTRLLVPPLCIRP 264
Score = 37 (18.1 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 329 IIKSFKIDKDNLDQSLDKSLNKSSNQII 356
I+K + +D+ + + L+KS++ +I
Sbjct: 752 ILKELSVIRDHAGSACLRELDKSNSPLI 779
>UNIPROTKB|F1S2E6 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0045087 "innate immune response" evidence=IEA]
[GO:0032728 "positive regulation of interferon-beta production"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0045087 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 GO:GO:0032728 KO:K03018 GO:GO:0032549
GeneTree:ENSGT00700000104490 OMA:PRRPLIF PANTHER:PTHR19376:SF15
EMBL:CU407090 RefSeq:XP_001929395.1 Ensembl:ENSSSCT00000011305
GeneID:100156229 KEGG:ssc:100156229 Uniprot:F1S2E6
Length = 1390
Score = 252 (93.8 bits), Expect = 1.4e-26, Sum P(3) = 1.4e-26
Identities = 61/158 (38%), Positives = 85/158 (53%)
Query: 460 LSEALKGIR-GDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGK 516
L++ +K R + W LQ L ++++L+ A + G Q L GK
Sbjct: 289 LNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGK 348
Query: 517 TGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMV 576
G R N+ GKRV+F+GR+VI+PDP L ID + VP+ AK LT+P V N+T LRK+V
Sbjct: 349 QGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANITFLRKLV 408
Query: 577 INGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRL 614
NGP V+PGAN IQ + R RE +A+ L
Sbjct: 409 RNGPEVHPGANFIQQRHTQMKRFLKYG--NREKMAQEL 444
Score = 181 (68.8 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 39/84 (46%), Positives = 50/84 (59%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP+ AK LT+P V N+T LRK+V NGP V+PGAN IQ
Sbjct: 363 FSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANITFLRKLVRNGPEVHPGANFIQ 422
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ R RE +A+ L
Sbjct: 423 QRHTQMKRFLKYG--NREKMAQEL 444
Score = 145 (56.1 bits), Expect = 1.4e-26, Sum P(3) = 1.4e-26
Identities = 36/123 (29%), Positives = 65/123 (52%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+E++Q + ++V S ++ + P G+ D MG SE+ PC TCG N C GH G
Sbjct: 26 EEMRQQAHIQVVSKNLYSQDNNHSPLLYGVLDHRMGT-SEKDRPCETCGKNLADCLGHYG 84
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLE 249
+I+L +P + +FR V +L++ C C I + + F++ +K Y+ Q + L+
Sbjct: 85 YIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEERKQFLDYLKRPGLTYL-QKRGLK 143
Query: 250 ETL 252
+ +
Sbjct: 144 KKI 146
Score = 44 (20.5 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 21/85 (24%), Positives = 37/85 (43%)
Query: 324 YQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQG-----YVMASEVEA-DFKKLW 377
Y QR+++KS ++L D ++ S+ II+ G M + E +FK++
Sbjct: 870 YMQRRLVKSL----EDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVL 925
Query: 378 TNEHLFLKCLI-PVLDTTKELIATD 401
N C P L + L+ T+
Sbjct: 926 DNIKAVFPCQSEPALSKNELLLTTE 950
Score = 38 (18.4 bits), Expect = 1.4e-26, Sum P(3) = 1.4e-26
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 388 IPVLDTTKELIATDIMFIRSLVVPPNNLRP 417
IP+L E + + L+VPP +RP
Sbjct: 235 IPLLLMNPEAGKPSDLILTRLLVPPLCIRP 264
>UNIPROTKB|I3LJR4 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04992
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
GeneTree:ENSGT00700000104490 EMBL:FP565284
Ensembl:ENSSSCT00000029425 Uniprot:I3LJR4
Length = 1010
Score = 234 (87.4 bits), Expect = 2.3e-26, Sum P(2) = 2.3e-26
Identities = 64/195 (32%), Positives = 103/195 (52%)
Query: 403 MFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSE 462
M + L VPP ++RP + Q +RN+ + + + + ++ EQ+ +
Sbjct: 248 MIVTVLPVPPLSVRPAVVMQ----GSARNQ--DDLTHKLADIVKINNQLRRNEQNGAAAH 301
Query: 463 ALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKL-NINKTT--GAHQIDGLKQMLDGKTGM 519
I D KL LQ++V ++D +L + + + LKQ L GK G
Sbjct: 302 V---IAEDV---KL------LQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGR 349
Query: 520 IRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVING 579
+R N+MGKRV+F+ R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G
Sbjct: 350 VRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRG 409
Query: 580 PNVYPGANMIQNEDG 594
+ YPGA I ++G
Sbjct: 410 NSQYPGAKYIIRDNG 424
Score = 150 (57.9 bits), Expect = 2.3e-26, Sum P(2) = 2.3e-26
Identities = 36/96 (37%), Positives = 49/96 (51%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E+K++SV + + P T G GGL D G I ER C TC N T+C GH GH
Sbjct: 30 ELKRMSVTEGGIKYPETTEG-GRPKLGGLMDPRQGVI-ERTGRCQTCAGNMTECPGHFGH 87
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATS 226
IEL PV + F +L+ CF C K+ + + +
Sbjct: 88 IELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNN 123
Score = 148 (57.2 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 29/64 (45%), Positives = 42/64 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I
Sbjct: 361 FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII 420
Query: 74 NEDG 77
++G
Sbjct: 421 RDNG 424
Score = 50 (22.7 bits), Expect = 7.5e-07, Sum P(2) = 7.5e-07
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 324 YQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKR--EQGYVMASEVEADFKKLWT 378
Y QR++IKS +++ D ++ S NQ+++ R E G +A E +F+ L T
Sbjct: 859 YIQRRLIKSM----ESVMVKYDATVRNSINQVVQLRYGEDG--LAGE-SVEFQNLAT 908
>UNIPROTKB|E2QXD8 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 GO:GO:0032549
GeneTree:ENSGT00700000104490 PANTHER:PTHR19376:SF15
EMBL:AAEX03002853 Ensembl:ENSCAFT00000024699 Uniprot:E2QXD8
Length = 1376
Score = 247 (92.0 bits), Expect = 5.0e-26, Sum P(3) = 5.0e-26
Identities = 60/158 (37%), Positives = 84/158 (53%)
Query: 460 LSEALKGIR-GDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGK 516
L++ +K R + W LQ L ++++L+ A + G Q L GK
Sbjct: 289 LNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGK 348
Query: 517 TGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMV 576
G R N+ GKRV+F+GR+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V
Sbjct: 349 QGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLV 408
Query: 577 INGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRL 614
NGP V+PGAN IQ + R RE +A+ L
Sbjct: 409 RNGPEVHPGANFIQQRHTQMKRFLKYG--NREKMAQEL 444
Score = 176 (67.0 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 38/84 (45%), Positives = 49/84 (58%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V NGP V+PGAN IQ
Sbjct: 363 FSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQ 422
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ R RE +A+ L
Sbjct: 423 QRHTQMKRFLKYG--NREKMAQEL 444
Score = 146 (56.5 bits), Expect = 5.0e-26, Sum P(3) = 5.0e-26
Identities = 36/123 (29%), Positives = 65/123 (52%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+E++Q + ++V S ++ + P G+ D MG SE+ PC TCG N C GH G
Sbjct: 26 EEMRQQAHIQVVSKNLYSQDNNHAPLLYGVLDHRMGT-SEKDRPCETCGKNLADCLGHYG 84
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLE 249
+I+L +P + +FR V +L++ C C I + + F++ +K Y+ Q + L+
Sbjct: 85 YIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKKQFLDYLKRPGLTYL-QKRGLK 143
Query: 250 ETL 252
+ +
Sbjct: 144 KKI 146
Score = 41 (19.5 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 324 YQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIR 357
Y QR+++KS ++L D ++ S+ II+
Sbjct: 873 YMQRRLVKSL----EDLCSQYDLTVRSSTGDIIQ 902
Score = 37 (18.1 bits), Expect = 5.0e-26, Sum P(3) = 5.0e-26
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 388 IPVLDTTKELIATDIMFIRSLVVPPNNLRP 417
+P+L E + + L+VPP +RP
Sbjct: 235 VPLLLMNPEAGKPSDLILTRLLVPPLCIRP 264
>UNIPROTKB|J9P629 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 KO:K03018 GO:GO:0032549
GeneTree:ENSGT00700000104490 CTD:11128 OMA:PRRPLIF
PANTHER:PTHR19376:SF15 EMBL:AAEX03002853 RefSeq:XP_536399.2
Ensembl:ENSCAFT00000047369 GeneID:479256 KEGG:cfa:479256
Uniprot:J9P629
Length = 1390
Score = 247 (92.0 bits), Expect = 5.2e-26, Sum P(3) = 5.2e-26
Identities = 60/158 (37%), Positives = 84/158 (53%)
Query: 460 LSEALKGIR-GDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGK 516
L++ +K R + W LQ L ++++L+ A + G Q L GK
Sbjct: 289 LNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGK 348
Query: 517 TGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMV 576
G R N+ GKRV+F+GR+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V
Sbjct: 349 QGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLV 408
Query: 577 INGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRL 614
NGP V+PGAN IQ + R RE +A+ L
Sbjct: 409 RNGPEVHPGANFIQQRHTQMKRFLKYG--NREKMAQEL 444
Score = 176 (67.0 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 38/84 (45%), Positives = 49/84 (58%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V NGP V+PGAN IQ
Sbjct: 363 FSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQ 422
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ R RE +A+ L
Sbjct: 423 QRHTQMKRFLKYG--NREKMAQEL 444
Score = 146 (56.5 bits), Expect = 5.2e-26, Sum P(3) = 5.2e-26
Identities = 36/123 (29%), Positives = 65/123 (52%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+E++Q + ++V S ++ + P G+ D MG SE+ PC TCG N C GH G
Sbjct: 26 EEMRQQAHIQVVSKNLYSQDNNHAPLLYGVLDHRMGT-SEKDRPCETCGKNLADCLGHYG 84
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLE 249
+I+L +P + +FR V +L++ C C I + + F++ +K Y+ Q + L+
Sbjct: 85 YIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKKQFLDYLKRPGLTYL-QKRGLK 143
Query: 250 ETL 252
+ +
Sbjct: 144 KKI 146
Score = 41 (19.5 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 324 YQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIR 357
Y QR+++KS ++L D ++ S+ II+
Sbjct: 870 YMQRRLVKSL----EDLCSQYDLTVRSSTGDIIQ 899
Score = 37 (18.1 bits), Expect = 5.2e-26, Sum P(3) = 5.2e-26
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 388 IPVLDTTKELIATDIMFIRSLVVPPNNLRP 417
+P+L E + + L+VPP +RP
Sbjct: 235 VPLLLMNPEAGKPSDLILTRLLVPPLCIRP 264
>UNIPROTKB|A4IF62 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase III subunit
RPC1" species:9913 "Bos taurus" [GO:0045087 "innate immune
response" evidence=ISS] [GO:0032728 "positive regulation of
interferon-beta production" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0045087 GO:GO:0006351
GO:GO:0051607 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
GO:GO:0032728 KO:K03018 eggNOG:COG0086 GO:GO:0032549
GeneTree:ENSGT00700000104490 HOVERGEN:HBG004339 EMBL:BC134422
IPI:IPI00701819 RefSeq:NP_001077219.1 UniGene:Bt.58772
ProteinModelPortal:A4IF62 STRING:A4IF62 PRIDE:A4IF62
Ensembl:ENSBTAT00000017638 GeneID:540308 KEGG:bta:540308 CTD:11128
HOGENOM:HOG000222974 InParanoid:A4IF62 OMA:PRRPLIF
OrthoDB:EOG4QVCB4 NextBio:20878554 ArrayExpress:A4IF62
PANTHER:PTHR19376:SF15 Uniprot:A4IF62
Length = 1390
Score = 247 (92.0 bits), Expect = 5.2e-26, Sum P(3) = 5.2e-26
Identities = 60/158 (37%), Positives = 84/158 (53%)
Query: 460 LSEALKGIR-GDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGK 516
L++ +K R + W LQ L ++++L+ A + G Q L GK
Sbjct: 289 LNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGK 348
Query: 517 TGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMV 576
G R N+ GKRV+F+GR+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V
Sbjct: 349 QGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLV 408
Query: 577 INGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRL 614
NGP V+PGAN IQ + R RE +A+ L
Sbjct: 409 RNGPEVHPGANFIQQRHTQMKRFLKYG--NREKMAQEL 444
Score = 176 (67.0 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 38/84 (45%), Positives = 49/84 (58%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V NGP V+PGAN IQ
Sbjct: 363 FSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQ 422
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ R RE +A+ L
Sbjct: 423 QRHTQMKRFLKYG--NREKMAQEL 444
Score = 145 (56.1 bits), Expect = 5.2e-26, Sum P(3) = 5.2e-26
Identities = 36/123 (29%), Positives = 65/123 (52%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+E++Q + ++V S ++ + P G+ D MG SE+ PC TCG N C GH G
Sbjct: 26 EEMRQQAHIQVVSKNLYSQDNNHSPLLYGVLDHRMGT-SEKDRPCETCGKNLADCLGHYG 84
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLE 249
+I+L +P + +FR V +L++ C C I + + F++ +K Y+ Q + L+
Sbjct: 85 YIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKKQFLDYLKRPGLTYL-QKRGLK 143
Query: 250 ETL 252
+ +
Sbjct: 144 KKI 146
Score = 41 (19.5 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 324 YQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIR 357
Y QR+++KS ++L D ++ S+ II+
Sbjct: 870 YMQRRLVKSL----EDLCSQYDLTVRSSTGDIIQ 899
Score = 38 (18.4 bits), Expect = 5.2e-26, Sum P(3) = 5.2e-26
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 388 IPVLDTTKELIATDIMFIRSLVVPPNNLRP 417
IP+L E + + L+VPP +RP
Sbjct: 235 IPLLLMNPEAGKPSDLILTRLLVPPLCIRP 264
>UNIPROTKB|O14802 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase III subunit
RPC1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0051607
"defense response to virus" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=NAS] [GO:0006351 "transcription, DNA-dependent"
evidence=NAS] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=NAS] [GO:0045087 "innate immune response" evidence=IMP]
[GO:0032728 "positive regulation of interferon-beta production"
evidence=IMP] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=TAS]
[GO:0006385 "transcription elongation from RNA polymerase III
promoter" evidence=TAS] [GO:0006386 "termination of RNA polymerase
III transcription" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
EMBL:CH471083 GO:GO:0045087 GO:GO:0051607 Gene3D:2.40.40.20
InterPro:IPR009010 Reactome:REACT_1788 GO:GO:0005666 GO:GO:0003899
GO:GO:0032728 KO:K03018 GO:GO:0006386 GO:GO:0006385 eggNOG:COG0086
GO:GO:0032549 HOVERGEN:HBG004339 CTD:11128 HOGENOM:HOG000222974
OMA:PRRPLIF OrthoDB:EOG4QVCB4 PANTHER:PTHR19376:SF15 EMBL:AF021351
EMBL:AL512628 EMBL:BC041089 EMBL:AY091459 IPI:IPI00024163
RefSeq:NP_008986.2 UniGene:Hs.436896 ProteinModelPortal:O14802
SMR:O14802 IntAct:O14802 STRING:O14802 PhosphoSite:O14802
PaxDb:O14802 PRIDE:O14802 Ensembl:ENST00000372371 GeneID:11128
KEGG:hsa:11128 UCSC:uc001jzn.3 GeneCards:GC10M079729
HGNC:HGNC:30074 HPA:HPA037926 MIM:607694 MIM:614258
neXtProt:NX_O14802 Orphanet:88637 Orphanet:77295
PharmGKB:PA134900426 InParanoid:O14802 PhylomeDB:O14802
ChiTaRS:POLR3A GenomeRNAi:11128 NextBio:42292 ArrayExpress:O14802
Bgee:O14802 CleanEx:HS_POLR3A Genevestigator:O14802
GermOnline:ENSG00000148606 Uniprot:O14802
Length = 1390
Score = 247 (92.0 bits), Expect = 6.6e-26, Sum P(3) = 6.6e-26
Identities = 60/158 (37%), Positives = 84/158 (53%)
Query: 460 LSEALKGIR-GDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGK 516
L++ +K R + W LQ L ++++L+ A + G Q L GK
Sbjct: 289 LNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGK 348
Query: 517 TGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMV 576
G R N+ GKRV+F+GR+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V
Sbjct: 349 QGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLV 408
Query: 577 INGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRL 614
NGP V+PGAN IQ + R RE +A+ L
Sbjct: 409 QNGPEVHPGANFIQQRHTQMKRFLKYG--NREKMAQEL 444
Score = 176 (67.0 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 38/84 (45%), Positives = 49/84 (58%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V NGP V+PGAN IQ
Sbjct: 363 FSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQ 422
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ R RE +A+ L
Sbjct: 423 QRHTQMKRFLKYG--NREKMAQEL 444
Score = 145 (56.1 bits), Expect = 6.6e-26, Sum P(3) = 6.6e-26
Identities = 36/123 (29%), Positives = 64/123 (52%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+E++Q + ++V S ++ P G+ D MG SE+ PC TCG N C GH G
Sbjct: 26 EEMRQQAHIQVVSKNLYSQDNQHAPLLYGVLDHRMGT-SEKDRPCETCGKNLADCLGHYG 84
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLE 249
+I+L +P + +FR V +L++ C C I + + F++ +K Y+ Q + L+
Sbjct: 85 YIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKKQFLDYLKRPGLTYL-QKRGLK 143
Query: 250 ETL 252
+ +
Sbjct: 144 KKI 146
Score = 43 (20.2 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 21/91 (23%), Positives = 40/91 (43%)
Query: 324 YQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQG-----YVMASEVEA-DFKKLW 377
Y QR+++KS ++L D ++ S+ II+ G M + E +FK++
Sbjct: 870 YMQRRLVKSL----EDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVL 925
Query: 378 TNEHLFLKCLI-PVLDTTKELIATDIMFIRS 407
N C P L + ++ T+ + +S
Sbjct: 926 DNIKAVFPCPSEPALSKNELILTTESIMKKS 956
Score = 37 (18.1 bits), Expect = 6.6e-26, Sum P(3) = 6.6e-26
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 388 IPVLDTTKELIATDIMFIRSLVVPPNNLRP 417
+P+L E + + L+VPP +RP
Sbjct: 235 VPLLLMNPEAGKPSDLILTRLLVPPLCIRP 264
>UNIPROTKB|E9PTB6 [details] [associations]
symbol:Polr3a "DNA-directed RNA polymerase" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0032728
"positive regulation of interferon-beta production" evidence=IEA]
[GO:0045087 "innate immune response" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 RGD:1305574 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0045087 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0032728
GO:GO:0032549 GeneTree:ENSGT00700000104490 PANTHER:PTHR19376:SF15
IPI:IPI00766228 PRIDE:E9PTB6 Ensembl:ENSRNOT00000013501
Uniprot:E9PTB6
Length = 1342
Score = 247 (92.0 bits), Expect = 7.3e-26, Sum P(3) = 7.3e-26
Identities = 60/158 (37%), Positives = 85/158 (53%)
Query: 460 LSEALKGIR-GDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGK 516
L++ +K R + W LQ L ++++L+ A + G Q L GK
Sbjct: 289 LNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGK 348
Query: 517 TGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMV 576
G R N+ GKRV+F+GR+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V
Sbjct: 349 QGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLV 408
Query: 577 INGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRL 614
NGP+V+PGAN IQ + R RE +A+ L
Sbjct: 409 RNGPDVHPGANFIQQRHMQMKRFLKYG--NREKMAQEL 444
Score = 176 (67.0 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 38/84 (45%), Positives = 50/84 (59%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP L ID + VP+ AK LT+P V N+ LRK+V NGP+V+PGAN IQ
Sbjct: 363 FSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPDVHPGANFIQ 422
Query: 74 NEDGSVVRISSSQAVQRESLAKRL 97
+ R RE +A+ L
Sbjct: 423 QRHMQMKRFLKYG--NREKMAQEL 444
Score = 144 (55.7 bits), Expect = 7.3e-26, Sum P(3) = 7.3e-26
Identities = 36/123 (29%), Positives = 65/123 (52%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGPISERGDPCTTCGNNYTKCKGHIG 189
+E++Q + ++V S ++ + P G+ D MG SE+ PC TCG N C GH G
Sbjct: 26 EEMRQQAHIQVVSKNLYSQDNNHAPLLYGVLDHRMGT-SEKDRPCETCGKNLADCLGHYG 84
Query: 190 HIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLE 249
+I+L +P + +FR V +L++ C C I + + F++ +K Y+ Q + L+
Sbjct: 85 YIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKQQFLDFLKRPGLTYL-QKRGLK 143
Query: 250 ETL 252
+ +
Sbjct: 144 KKI 146
Score = 41 (19.5 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 324 YQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIR 357
Y QR+++KS ++L D ++ S+ II+
Sbjct: 870 YMQRRLVKSL----EDLCSQYDLTVRSSTGDIIQ 899
Score = 37 (18.1 bits), Expect = 7.3e-26, Sum P(3) = 7.3e-26
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 388 IPVLDTTKELIATDIMFIRSLVVPPNNLRP 417
+P+L E + + L+VPP +RP
Sbjct: 235 VPLLLMNPEAGKPSDLILTRLLVPPLCIRP 264
>UNIPROTKB|J9NW09 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 GO:GO:0003677 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 EMBL:AAEX03003616 EMBL:AAEX03003617
Ensembl:ENSCAFT00000050029 Uniprot:J9NW09
Length = 1789
Score = 234 (87.4 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
Identities = 64/195 (32%), Positives = 103/195 (52%)
Query: 403 MFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSE 462
M + L VPP ++RP + Q +RN+ + + + + ++ EQ+ +
Sbjct: 248 MIVTVLPVPPLSVRPAVVMQ----GSARNQ--DDLTHKLADIVKINNQLRRNEQNGAAAH 301
Query: 463 ALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKL-NINKTT--GAHQIDGLKQMLDGKTGM 519
I D KL LQ++V ++D +L + + + LKQ L GK G
Sbjct: 302 V---IAEDV---KL------LQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGR 349
Query: 520 IRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVING 579
+R N+MGKRV+F+ R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G
Sbjct: 350 VRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRG 409
Query: 580 PNVYPGANMIQNEDG 594
+ YPGA I ++G
Sbjct: 410 NSQYPGAKYIIRDNG 424
Score = 150 (57.9 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
Identities = 36/96 (37%), Positives = 49/96 (51%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E+K++SV + + P T G GGL D G I ER C TC N T+C GH GH
Sbjct: 30 ELKRMSVTEGGIKYPETTEG-GRPKLGGLMDPRQGVI-ERTGRCQTCAGNMTECPGHFGH 87
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATS 226
IEL PV + F +L+ CF C K+ + + +
Sbjct: 88 IELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNN 123
Score = 148 (57.2 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 29/64 (45%), Positives = 42/64 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I
Sbjct: 361 FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII 420
Query: 74 NEDG 77
++G
Sbjct: 421 RDNG 424
Score = 50 (22.7 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 324 YQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKR--EQGYVMASEVEADFKKLWT 378
Y QR++IKS +++ D ++ S NQ+++ R E G +A E +F+ L T
Sbjct: 859 YIQRRLIKSM----ESVMVKYDATVRNSINQVVQLRYGEDG--LAGE-SVEFQNLAT 908
>UNIPROTKB|F1PGS0 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 GO:GO:0003677 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 OMA:KVLPWST EMBL:AAEX03003616
EMBL:AAEX03003617 Ensembl:ENSCAFT00000026237 Uniprot:F1PGS0
Length = 1969
Score = 234 (87.4 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 64/195 (32%), Positives = 103/195 (52%)
Query: 403 MFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSE 462
M + L VPP ++RP + Q +RN+ + + + + ++ EQ+ +
Sbjct: 248 MIVTVLPVPPLSVRPAVVMQ----GSARNQ--DDLTHKLADIVKINNQLRRNEQNGAAAH 301
Query: 463 ALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKL-NINKTT--GAHQIDGLKQMLDGKTGM 519
I D KL LQ++V ++D +L + + + LKQ L GK G
Sbjct: 302 V---IAEDV---KL------LQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGR 349
Query: 520 IRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVING 579
+R N+MGKRV+F+ R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G
Sbjct: 350 VRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRG 409
Query: 580 PNVYPGANMIQNEDG 594
+ YPGA I ++G
Sbjct: 410 NSQYPGAKYIIRDNG 424
Score = 150 (57.9 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 36/96 (37%), Positives = 49/96 (51%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E+K++SV + + P T G GGL D G I ER C TC N T+C GH GH
Sbjct: 30 ELKRMSVTEGGIKYPETTEG-GRPKLGGLMDPRQGVI-ERTGRCQTCAGNMTECPGHFGH 87
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATS 226
IEL PV + F +L+ CF C K+ + + +
Sbjct: 88 IELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNN 123
Score = 148 (57.2 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 29/64 (45%), Positives = 42/64 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I
Sbjct: 361 FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII 420
Query: 74 NEDG 77
++G
Sbjct: 421 RDNG 424
Score = 50 (22.7 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 324 YQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKR--EQGYVMASEVEADFKKLWT 378
Y QR++IKS +++ D ++ S NQ+++ R E G +A E +F+ L T
Sbjct: 859 YIQRRLIKSM----ESVMVKYDATVRNSINQVVQLRYGEDG--LAGE-SVEFQNLAT 908
>UNIPROTKB|G3MZY8 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9913
"Bos taurus" [GO:0031625 "ubiquitin protein ligase binding"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0004672 "protein kinase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR000684 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007073 InterPro:IPR007075
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
Pfam:PF00623 Pfam:PF04983 Pfam:PF04990 Pfam:PF04992 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 Pfam:PF05001 PROSITE:PS00115
SMART:SM00663 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 OMA:KVLPWST EMBL:DAAA02048777
EMBL:DAAA02048778 EMBL:DAAA02048779 EMBL:DAAA02048780
EMBL:DAAA02048781 Ensembl:ENSBTAT00000064788 Uniprot:G3MZY8
Length = 1970
Score = 234 (87.4 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 64/195 (32%), Positives = 103/195 (52%)
Query: 403 MFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSE 462
M + L VPP ++RP + Q +RN+ + + + + ++ EQ+ +
Sbjct: 248 MIVTVLPVPPLSVRPAVVMQ----GSARNQ--DDLTHKLADIVKINNQLRRNEQNGAAAH 301
Query: 463 ALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKL-NINKTT--GAHQIDGLKQMLDGKTGM 519
I D KL LQ++V ++D +L + + + LKQ L GK G
Sbjct: 302 V---IAEDV---KL------LQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGR 349
Query: 520 IRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVING 579
+R N+MGKRV+F+ R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G
Sbjct: 350 VRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRG 409
Query: 580 PNVYPGANMIQNEDG 594
+ YPGA I ++G
Sbjct: 410 NSQYPGAKYIIRDNG 424
Score = 150 (57.9 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 36/96 (37%), Positives = 49/96 (51%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E+K++SV + + P T G GGL D G I ER C TC N T+C GH GH
Sbjct: 30 ELKRMSVTEGGIKYPETTEG-GRPKLGGLMDPRQGVI-ERTGRCQTCAGNMTECPGHFGH 87
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATS 226
IEL PV + F +L+ CF C K+ + + +
Sbjct: 88 IELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNN 123
Score = 148 (57.2 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 29/64 (45%), Positives = 42/64 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I
Sbjct: 361 FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII 420
Query: 74 NEDG 77
++G
Sbjct: 421 RDNG 424
Score = 50 (22.7 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 324 YQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKR--EQGYVMASEVEADFKKLWT 378
Y QR++IKS +++ D ++ S NQ+++ R E G +A E +F+ L T
Sbjct: 859 YIQRRLIKSM----ESVMVKYDATVRNSINQVVQLRYGEDG--LAGE-SVEFQNLAT 908
>UNIPROTKB|P24928 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase II subunit RPB1"
species:9606 "Homo sapiens" [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003677 "DNA binding" evidence=NAS] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=NAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0006366
"transcription from RNA polymerase II promoter"
evidence=IDA;NAS;TAS] [GO:0005634 "nucleus" evidence=IDA;NAS]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IDA] [GO:0004672 "protein kinase activity" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0031625 "ubiquitin protein ligase binding" evidence=IPI]
[GO:0006468 "protein phosphorylation" evidence=IDA]
Reactome:REACT_216 Reactome:REACT_71 InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 Reactome:REACT_116125
EMBL:CH471108 GO:GO:0016032 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 Reactome:REACT_1675 GO:GO:0006468 GO:GO:0006368
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006367 GO:GO:0000398
Reactome:REACT_1788 GO:GO:0006370 GO:GO:0050434 GO:GO:0006283
Reactome:REACT_1892 EMBL:AC113189 GO:GO:0003899 PDB:2GHQ PDB:2GHT
PDBsum:2GHQ PDBsum:2GHT eggNOG:COG0086 GO:GO:0003968 GO:GO:0005665
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 EMBL:X63564 EMBL:X74874
EMBL:X74873 EMBL:X74872 EMBL:X74871 EMBL:X74870 EMBL:BC137231
IPI:IPI00031627 PIR:I38186 PIR:S21054 RefSeq:NP_000928.1
UniGene:Hs.270017 PDB:2LTO PDBsum:2LTO ProteinModelPortal:P24928
SMR:P24928 DIP:DIP-29011N IntAct:P24928 MINT:MINT-156582
STRING:P24928 PhosphoSite:P24928 DMDM:281185484 PaxDb:P24928
PRIDE:P24928 Ensembl:ENST00000322644 GeneID:5430 KEGG:hsa:5430
UCSC:uc002ghf.4 CTD:5430 GeneCards:GC17P007387 H-InvDB:HIX0173727
HGNC:HGNC:9187 HPA:CAB012226 HPA:CAB016388 HPA:CAB022311
HPA:HPA021563 MIM:180660 neXtProt:NX_P24928 PharmGKB:PA33507
HOVERGEN:HBG004339 InParanoid:P24928 OrthoDB:EOG4JWVCM
BindingDB:P24928 ChEMBL:CHEMBL1641353 ChiTaRS:POLR2A
EvolutionaryTrace:P24928 GenomeRNAi:5430 NextBio:21009
ArrayExpress:P24928 Bgee:P24928 CleanEx:HS_POLR2A
Genevestigator:P24928 GermOnline:ENSG00000181222 Uniprot:P24928
Length = 1970
Score = 234 (87.4 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 64/195 (32%), Positives = 103/195 (52%)
Query: 403 MFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSE 462
M + L VPP ++RP + Q +RN+ + + + + ++ EQ+ +
Sbjct: 248 MIVTVLPVPPLSVRPAVVMQ----GSARNQ--DDLTHKLADIVKINNQLRRNEQNGAAAH 301
Query: 463 ALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKL-NINKTT--GAHQIDGLKQMLDGKTGM 519
I D KL LQ++V ++D +L + + + LKQ L GK G
Sbjct: 302 V---IAEDV---KL------LQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGR 349
Query: 520 IRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVING 579
+R N+MGKRV+F+ R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G
Sbjct: 350 VRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRG 409
Query: 580 PNVYPGANMIQNEDG 594
+ YPGA I ++G
Sbjct: 410 NSQYPGAKYIIRDNG 424
Score = 150 (57.9 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 36/96 (37%), Positives = 49/96 (51%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E+K++SV + + P T G GGL D G I ER C TC N T+C GH GH
Sbjct: 30 ELKRMSVTEGGIKYPETTEG-GRPKLGGLMDPRQGVI-ERTGRCQTCAGNMTECPGHFGH 87
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATS 226
IEL PV + F +L+ CF C K+ + + +
Sbjct: 88 IELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNN 123
Score = 148 (57.2 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 29/64 (45%), Positives = 42/64 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I
Sbjct: 361 FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII 420
Query: 74 NEDG 77
++G
Sbjct: 421 RDNG 424
Score = 50 (22.7 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 324 YQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKR--EQGYVMASEVEADFKKLWT 378
Y QR++IKS +++ D ++ S NQ+++ R E G +A E +F+ L T
Sbjct: 859 YIQRRLIKSM----ESVMVKYDATVRNSINQVVQLRYGEDG--LAGE-SVEFQNLAT 908
>MGI|MGI:98086 [details] [associations]
symbol:Polr2a "polymerase (RNA) II (DNA directed) polypeptide
A" species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006468 "protein phosphorylation"
evidence=ISO] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0031625 "ubiquitin protein ligase binding" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 MGI:MGI:98086
GO:GO:0046872 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
EMBL:AL603707 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 GO:GO:0005665 GeneTree:ENSGT00700000104490
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 CTD:5430
HOVERGEN:HBG004339 OrthoDB:EOG4JWVCM ChiTaRS:POLR2A EMBL:M12130
EMBL:M14101 IPI:IPI00136207 PIR:A28490 RefSeq:NP_033115.1
UniGene:Mm.16533 DisProt:DP00181 ProteinModelPortal:P08775
SMR:P08775 DIP:DIP-46369N IntAct:P08775 STRING:P08775
PhosphoSite:P08775 PaxDb:P08775 PRIDE:P08775
Ensembl:ENSMUST00000058470 Ensembl:ENSMUST00000071213 GeneID:20020
KEGG:mmu:20020 UCSC:uc007jrj.1 InParanoid:Q5F298 NextBio:297535
Bgee:P08775 CleanEx:MM_POLR2A Genevestigator:P08775
GermOnline:ENSMUSG00000005198 Uniprot:P08775
Length = 1970
Score = 234 (87.4 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 64/195 (32%), Positives = 103/195 (52%)
Query: 403 MFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSE 462
M + L VPP ++RP + Q +RN+ + + + + ++ EQ+ +
Sbjct: 248 MIVTVLPVPPLSVRPAVVMQ----GSARNQ--DDLTHKLADIVKINNQLRRNEQNGAAAH 301
Query: 463 ALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKL-NINKTT--GAHQIDGLKQMLDGKTGM 519
I D KL LQ++V ++D +L + + + LKQ L GK G
Sbjct: 302 V---IAEDV---KL------LQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGR 349
Query: 520 IRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVING 579
+R N+MGKRV+F+ R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G
Sbjct: 350 VRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRG 409
Query: 580 PNVYPGANMIQNEDG 594
+ YPGA I ++G
Sbjct: 410 NSQYPGAKYIIRDNG 424
Score = 150 (57.9 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 36/96 (37%), Positives = 49/96 (51%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E+K++SV + + P T G GGL D G I ER C TC N T+C GH GH
Sbjct: 30 ELKRMSVTEGGIKYPETTEG-GRPKLGGLMDPRQGVI-ERTGRCQTCAGNMTECPGHFGH 87
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATS 226
IEL PV + F +L+ CF C K+ + + +
Sbjct: 88 IELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNN 123
Score = 148 (57.2 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 29/64 (45%), Positives = 42/64 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I
Sbjct: 361 FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII 420
Query: 74 NEDG 77
++G
Sbjct: 421 RDNG 424
Score = 50 (22.7 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 324 YQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKR--EQGYVMASEVEADFKKLWT 378
Y QR++IKS +++ D ++ S NQ+++ R E G +A E +F+ L T
Sbjct: 859 YIQRRLIKSM----ESVMVKYDATVRNSINQVVQLRYGEDG--LAGE-SVEFQNLAT 908
>RGD|1587326 [details] [associations]
symbol:Polr2a "polymerase (RNA) II (DNA directed) polypeptide A"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0004672 "protein kinase activity" evidence=IEA;ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA;ISO] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0006468 "protein
phosphorylation" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0031625 "ubiquitin protein ligase binding"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000684 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007073 InterPro:IPR007075
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
Pfam:PF00623 Pfam:PF04983 Pfam:PF04990 Pfam:PF04992 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 Pfam:PF05001 PROSITE:PS00115
SMART:SM00663 RGD:1587326 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 KO:K03006 CTD:5430 OrthoDB:EOG4JWVCM
IPI:IPI00952328 RefSeq:XP_001079162.1 RefSeq:XP_343923.3
UniGene:Rn.163136 Ensembl:ENSRNOT00000068013 GeneID:363633
KEGG:rno:363633 UCSC:RGD:1587326 NextBio:683839 ArrayExpress:D4A5A6
Uniprot:D4A5A6
Length = 1970
Score = 234 (87.4 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 64/195 (32%), Positives = 103/195 (52%)
Query: 403 MFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSE 462
M + L VPP ++RP + Q +RN+ + + + + ++ EQ+ +
Sbjct: 248 MIVTVLPVPPLSVRPAVVMQ----GSARNQ--DDLTHKLADIVKINNQLRRNEQNGAAAH 301
Query: 463 ALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKL-NINKTT--GAHQIDGLKQMLDGKTGM 519
I D KL LQ++V ++D +L + + + LKQ L GK G
Sbjct: 302 V---IAEDV---KL------LQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGR 349
Query: 520 IRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVING 579
+R N+MGKRV+F+ R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G
Sbjct: 350 VRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRG 409
Query: 580 PNVYPGANMIQNEDG 594
+ YPGA I ++G
Sbjct: 410 NSQYPGAKYIIRDNG 424
Score = 150 (57.9 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 36/96 (37%), Positives = 49/96 (51%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E+K++SV + + P T G GGL D G I ER C TC N T+C GH GH
Sbjct: 30 ELKRMSVTEGGIKYPETTEG-GRPKLGGLMDPRQGVI-ERTGRCQTCAGNMTECPGHFGH 87
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATS 226
IEL PV + F +L+ CF C K+ + + +
Sbjct: 88 IELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNN 123
Score = 148 (57.2 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 29/64 (45%), Positives = 42/64 (65%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L+ID +GVP A +T+ VTP+N+ L+++V G + YPGA I
Sbjct: 361 FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII 420
Query: 74 NEDG 77
++G
Sbjct: 421 RDNG 424
Score = 50 (22.7 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 324 YQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKR--EQGYVMASEVEADFKKLWT 378
Y QR++IKS +++ D ++ S NQ+++ R E G +A E +F+ L T
Sbjct: 859 YIQRRLIKSM----ESVMVKYDATVRNSINQVVQLRYGEDG--LAGE-SVEFQNLAT 908
>SGD|S000002299 [details] [associations]
symbol:RPO21 "RNA polymerase II largest subunit B220"
species:4932 "Saccharomyces cerevisiae" [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA;IMP] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA;IDA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003968 "RNA-directed
RNA polymerase activity" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 SGD:S000002299 GO:GO:0005739
GO:GO:0046872 GO:GO:0003677 EMBL:BK006938 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:X96876 EMBL:U27182
GO:GO:0003899 PDB:4GWQ PDBsum:4GWQ PDB:2LO6 PDBsum:2LO6
eggNOG:COG0086 GO:GO:0005665 PDB:1I3Q PDB:1I50 PDB:1I6H PDB:1K83
PDB:1NIK PDB:1NT9 PDB:1PQV PDB:1R5U PDB:1R9S PDB:1R9T PDB:1SFO
PDB:1TWA PDB:1TWC PDB:1TWF PDB:1TWG PDB:1TWH PDB:1WCM PDB:1Y1V
PDB:1Y1W PDB:1Y1Y PDB:1Y77 PDB:2B63 PDB:2B8K PDB:2E2H PDB:2E2I
PDB:2E2J PDB:2JA5 PDB:2JA6 PDB:2JA7 PDB:2JA8 PDB:2NVQ PDB:2NVT
PDB:2NVX PDB:2NVY PDB:2NVZ PDB:2R7Z PDB:2R92 PDB:2R93 PDB:2VUM
PDB:2YU9 PDB:3CQZ PDB:3FKI PDB:3GTG PDB:3GTJ PDB:3GTK PDB:3GTL
PDB:3GTM PDB:3GTO PDB:3GTP PDB:3GTQ PDB:3H3V PDB:3HOU PDB:3HOV
PDB:3HOW PDB:3HOX PDB:3HOY PDB:3HOZ PDB:3I4M PDB:3I4N PDB:3K1F
PDB:3K7A PDB:3M3Y PDB:3M4O PDB:3PO2 PDB:3PO3 PDB:3QT1 PDB:3RZD
PDB:3RZO PDB:3S14 PDB:3S15 PDB:3S16 PDB:3S17 PDB:3S1M PDB:3S1N
PDB:3S1Q PDB:3S1R PDB:3S2D PDB:3S2H PDB:4A3B PDB:4A3C PDB:4A3D
PDB:4A3E PDB:4A3F PDB:4A3G PDB:4A3I PDB:4A3J PDB:4A3K PDB:4A3L
PDB:4A3M PDB:4A93 PDB:4BBR PDB:4BBS PDBsum:1I3Q PDBsum:1I50
PDBsum:1I6H PDBsum:1K83 PDBsum:1NIK PDBsum:1NT9 PDBsum:1PQV
PDBsum:1R5U PDBsum:1R9S PDBsum:1R9T PDBsum:1SFO PDBsum:1TWA
PDBsum:1TWC PDBsum:1TWF PDBsum:1TWG PDBsum:1TWH PDBsum:1WCM
PDBsum:1Y1V PDBsum:1Y1W PDBsum:1Y1Y PDBsum:1Y77 PDBsum:2B63
PDBsum:2B8K PDBsum:2E2H PDBsum:2E2I PDBsum:2E2J PDBsum:2JA5
PDBsum:2JA6 PDBsum:2JA7 PDBsum:2JA8 PDBsum:2NVQ PDBsum:2NVT
PDBsum:2NVX PDBsum:2NVY PDBsum:2NVZ PDBsum:2R7Z PDBsum:2R92
PDBsum:2R93 PDBsum:2VUM PDBsum:2YU9 PDBsum:3CQZ PDBsum:3FKI
PDBsum:3GTG PDBsum:3GTJ PDBsum:3GTK PDBsum:3GTL PDBsum:3GTM
PDBsum:3GTO PDBsum:3GTP PDBsum:3GTQ PDBsum:3H3V PDBsum:3HOU
PDBsum:3HOV PDBsum:3HOW PDBsum:3HOX PDBsum:3HOY PDBsum:3HOZ
PDBsum:3I4M PDBsum:3I4N PDBsum:3K1F PDBsum:3K7A PDBsum:3M3Y
PDBsum:3M4O PDBsum:3PO2 PDBsum:3PO3 PDBsum:3QT1 PDBsum:3RZD
PDBsum:3RZO PDBsum:3S14 PDBsum:3S15 PDBsum:3S16 PDBsum:3S17
PDBsum:3S1M PDBsum:3S1N PDBsum:3S1Q PDBsum:3S1R PDBsum:3S2D
PDBsum:3S2H PDBsum:4A3B PDBsum:4A3C PDBsum:4A3D PDBsum:4A3E
PDBsum:4A3F PDBsum:4A3G PDBsum:4A3I PDBsum:4A3J PDBsum:4A3K
PDBsum:4A3L PDBsum:4A3M PDBsum:4A93 PDBsum:4BBR PDBsum:4BBS
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 OrthoDB:EOG4J14H5
EMBL:X03128 EMBL:Z74188 PIR:S67686 RefSeq:NP_010141.1 PDB:2L0I
PDBsum:2L0I ProteinModelPortal:P04050 SMR:P04050 DIP:DIP-611N
IntAct:P04050 MINT:MINT-432838 STRING:P04050 PaxDb:P04050
PeptideAtlas:P04050 EnsemblFungi:YDL140C GeneID:851415
KEGG:sce:YDL140C CYGD:YDL140c GeneTree:ENSGT00700000105212
EvolutionaryTrace:P04050 NextBio:968606 ArrayExpress:P04050
Genevestigator:P04050 GermOnline:YDL140C Uniprot:P04050
Length = 1733
Score = 240 (89.5 bits), Expect = 2.3e-25, Sum P(2) = 2.3e-25
Identities = 50/124 (40%), Positives = 73/124 (58%)
Query: 483 LQYNVDLLMDAKLNINKTT---GAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQ++V MD + + ++ L GK G IR N+MGKRV+F+ R+VI+
Sbjct: 296 LQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISG 355
Query: 540 DPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRI 599
DP L +D +GVP AKTLTYP VTP+N+ L ++V NGPN +PGA + + G + +
Sbjct: 356 DPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDSGDRIDL 415
Query: 600 SSSQ 603
S+
Sbjct: 416 RYSK 419
Score = 172 (65.6 bits), Expect = 3.1e-08, Sum P(3) = 3.1e-08
Identities = 33/73 (45%), Positives = 47/73 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+ DP L +D +GVP AKTLTYP VTP+N+ L ++V NGPN +PGA +
Sbjct: 347 FSARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVI 406
Query: 74 NEDGSVVRISSSQ 86
+ G + + S+
Sbjct: 407 RDSGDRIDLRYSK 419
Score = 140 (54.3 bits), Expect = 2.3e-25, Sum P(2) = 2.3e-25
Identities = 31/102 (30%), Positives = 52/102 (50%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIP-GGLYDLAMGPISERGDPCTTCGNNYTKCKGH 187
++ +EV+ +SV K+ P T + GGL D +G I +R C TC +C GH
Sbjct: 22 FSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSI-DRNLKCQTCQEGMNECPGH 80
Query: 188 IGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLL 229
GHI+L PV + F ++ + + C C K+ + ++L+
Sbjct: 81 FGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELM 122
Score = 52 (23.4 bits), Expect = 3.1e-08, Sum P(3) = 3.1e-08
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 331 KSFKIDKDNLDQSLDKSLNKSSNQII 356
K +++D N D +LD SL +S ++I+
Sbjct: 895 KRYRVDLLNTDHTLDPSLLESGSEIL 920
Score = 41 (19.5 bits), Expect = 9.9e-08, Sum P(2) = 9.9e-08
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 423 MPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNN 474
+P E +R +L Q C ++ NK ++ + L GIR TL +
Sbjct: 491 VPQSEETRAELSQL----CAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRD 538
Score = 40 (19.1 bits), Expect = 3.1e-08, Sum P(3) = 3.1e-08
Identities = 15/68 (22%), Positives = 28/68 (41%)
Query: 272 HVQSILAHGTKICDINDYKGGEELRSAFVAQV----LSRHVKRK-------CIFCATPIN 320
H S++AH K+ + ++ + S + A ++ HV + CA P+
Sbjct: 451 HKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQ 510
Query: 321 AISYQQRK 328
+S Q K
Sbjct: 511 IVSPQSNK 518
Score = 37 (18.1 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 124 LKLKYYTDQEVKQL 137
LKL+ D+E KQL
Sbjct: 923 LKLQVLLDEEYKQL 936
>SGD|S000005642 [details] [associations]
symbol:RPO31 "RNA polymerase III largest subunit C160"
species:4932 "Saccharomyces cerevisiae" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IDA] [GO:0005666 "DNA-directed RNA polymerase III
complex" evidence=IDA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IDA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 SGD:S000005642
EMBL:BK006948 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 EMBL:X90518
EMBL:X94335 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0005666
GO:GO:0003899 Reactome:REACT_83470 KO:K03018 OrthoDB:EOG4X3M8C
eggNOG:COG0086 GO:GO:0032549 Reactome:REACT_87991 GO:GO:0042797
GeneTree:ENSGT00700000104490 HOGENOM:HOG000222974
PANTHER:PTHR19376:SF15 EMBL:X03129 EMBL:Z75024 PIR:A00694
RefSeq:NP_014759.1 ProteinModelPortal:P04051 SMR:P04051
DIP:DIP-612N IntAct:P04051 MINT:MINT-557787 STRING:P04051
PaxDb:P04051 PeptideAtlas:P04051 EnsemblFungi:YOR116C GeneID:854283
KEGG:sce:YOR116C CYGD:YOR116c OMA:CINELDN NextBio:976257
Genevestigator:P04051 GermOnline:YOR116C Uniprot:P04051
Length = 1460
Score = 254 (94.5 bits), Expect = 3.3e-25, Sum P(2) = 3.3e-25
Identities = 60/147 (40%), Positives = 89/147 (60%)
Query: 457 SDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDA-KLNINKTTGAHQ-------IDG 508
S L+ L +G ++NN +++ W LQ V + +++ +N G+ I G
Sbjct: 296 SSLIKAGLD--KGISINNMMEH-WDYLQLTVAMYINSDSVNPAMLPGSSNGGGKVKPIRG 352
Query: 509 LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWN 568
Q L GK G R N+ GKRV+F+GR+VI+PDP L+ID + VP AK LTYP VT +N
Sbjct: 353 FCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYN 412
Query: 569 VTLLRKMVINGPNVYPGANMI--QNED 593
L+++++NGPNV+PGAN + +NED
Sbjct: 413 RHKLQELIVNGPNVHPGANYLLKRNED 439
Score = 173 (66.0 bits), Expect = 4.9e-09, P = 4.9e-09
Identities = 34/65 (52%), Positives = 47/65 (72%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI- 72
F R+VI+PDP L+ID + VP AK LTYP VT +N L+++++NGPNV+PGAN +
Sbjct: 375 FSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELIVNGPNVHPGANYLL 434
Query: 73 -QNED 76
+NED
Sbjct: 435 KRNED 439
Score = 122 (48.0 bits), Expect = 3.3e-25, Sum P(2) = 3.3e-25
Identities = 33/129 (25%), Positives = 60/129 (46%)
Query: 109 MKEKIITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIP--GGLYDLAMGP 166
MKE +++ + L+ + ++ S V+V + F+ P G D MG
Sbjct: 1 MKEVVVSETPKRIKGLEFSALSAADIVAQSEVEVSTRDLFDLEKDRAPKANGALDPKMG- 59
Query: 167 ISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATS 226
+S C TC N C GH GH++L +PV + +F+ +L+ C C I + T
Sbjct: 60 VSSSSLECATCHGNLASCHGHFGHLKLALPVFHIGYFKATIQILQGICKNCSAILLSETD 119
Query: 227 QLLFINQIK 235
+ F+++++
Sbjct: 120 KRQFLHELR 128
>DICTYBASE|DDB_G0277199 [details] [associations]
symbol:rpc1 "RNA polymerase III, largest subunit"
species:44689 "Dictyostelium discoideum" [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006383 "transcription
from RNA polymerase III promoter" evidence=ISS] [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
dictyBase:DDB_G0277199 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GenomeReviews:CM000151_GR Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:AAFI02000019 GO:GO:0006383 GO:GO:0005666 GO:GO:0003899
KO:K03018 eggNOG:COG0086 HSSP:P04050 GO:GO:0032549 OMA:PRRPLIF
PANTHER:PTHR19376:SF15 RefSeq:XP_642724.1 ProteinModelPortal:Q86AQ5
STRING:Q86AQ5 EnsemblProtists:DDB0216293 GeneID:8620917
KEGG:ddi:DDB_G0277199 ProtClustDB:CLSZ2729139 Uniprot:Q86AQ5
Length = 1450
Score = 253 (94.1 bits), Expect = 7.5e-25, Sum P(3) = 7.5e-25
Identities = 50/89 (56%), Positives = 63/89 (70%)
Query: 506 IDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVT 565
+ GL Q L GKTG R N+ GKRV+F+GR+VI+PDP LNID + VP A T+TYP VT
Sbjct: 331 VRGLSQRLKGKTGRFRGNLSGKRVDFSGRTVISPDPNLNIDEVAVPQLIALTMTYPERVT 390
Query: 566 PWNVTLLRKMVINGPNVYPGANMIQNEDG 594
+N+ L+K VINGP+ +PGAN I DG
Sbjct: 391 DYNIERLQKYVINGPDRHPGANYIIYADG 419
Score = 173 (66.0 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 35/64 (54%), Positives = 44/64 (68%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP LNID + VP A T+TYP VT +N+ L+K VINGP+ +PGAN I
Sbjct: 356 FSGRTVISPDPNLNIDEVAVPQLIALTMTYPERVTDYNIERLQKYVINGPDRHPGANYII 415
Query: 74 NEDG 77
DG
Sbjct: 416 YADG 419
Score = 126 (49.4 bits), Expect = 7.5e-25, Sum P(3) = 7.5e-25
Identities = 31/127 (24%), Positives = 67/127 (52%)
Query: 130 TDQEVKQLSVVKVFSPITFNSLGHT-IPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
++ ++ +LS V++ + F+ + P G+ D +G S++ CTTCG + C GH
Sbjct: 23 SEDDIVRLSHVQIVNRELFDLVKRKPTPYGVLDNKLGT-SDKQAMCTTCGLSIVDCVGHF 81
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
G+I+L +PV + + +++ +L++ C C I + + ++ +++ + Q K L
Sbjct: 82 GYIKLQLPVFHIGYLKNIMNILQMICKSCSTILLNEEKKQYYLRKMRNKKMDNL-QRKSL 140
Query: 249 EETLFNE 255
+ +F E
Sbjct: 141 LKKIFLE 147
Score = 46 (21.3 bits), Expect = 1.3e-16, Sum P(3) = 1.3e-16
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 74 NEDGSVVRISSSQAVQRE--SLAKRLITP 100
+ED +VR+S Q V RE L KR TP
Sbjct: 23 SED-DIVRLSHVQIVNRELFDLVKRKPTP 50
Score = 40 (19.1 bits), Expect = 7.5e-25, Sum P(3) = 7.5e-25
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 373 FKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRP 417
FKK+ + + + + + PV+ + LI T ++VPP ++RP
Sbjct: 221 FKKI-SYQDIEIMNMDPVIGRPERLILT------YMLVPPVSIRP 258
Score = 37 (18.1 bits), Expect = 3.1e-16, Sum P(2) = 3.1e-16
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 25 YLNIDSIGVPLEFAKT 40
Y+N D G+PL+ T
Sbjct: 313 YINSDVPGLPLQMKPT 328
Score = 37 (18.1 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 13/51 (25%), Positives = 22/51 (43%)
Query: 504 HQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEF 554
H + G + ++D M +R+ A + T Y DSIG ++F
Sbjct: 838 HTMGGREGLVDTAVKTAETGYMQRRLMKALEDLSTHYDYTVRDSIGGIVQF 888
>FB|FBgn0003277 [details] [associations]
symbol:RpII215 "RNA polymerase II 215kD subunit" species:7227
"Drosophila melanogaster" [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS;NAS;IDA] [GO:0005703 "polytene
chromosome puff" evidence=IDA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISS;NAS] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0007095
"mitotic G2 DNA damage checkpoint" evidence=IGI] [GO:0005700
"polytene chromosome" evidence=IDA] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
PROSITE:PS00115 SMART:SM00663 GO:GO:0007095 GO:GO:0046872
GO:GO:0003677 EMBL:AE014298 GO:GO:0006366 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0005703 GO:GO:0003899 eggNOG:COG0086
GO:GO:0005665 GeneTree:ENSGT00700000104490 OMA:KVLPWST KO:K03006
EMBL:M27431 EMBL:M14203 EMBL:M11798 EMBL:M19537 PIR:S04457
RefSeq:NP_511124.1 UniGene:Dm.2925 ProteinModelPortal:P04052
SMR:P04052 DIP:DIP-22282N IntAct:P04052 MINT:MINT-970158
STRING:P04052 PaxDb:P04052 EnsemblMetazoa:FBtr0073542 GeneID:32100
KEGG:dme:Dmel_CG1554 CTD:32100 FlyBase:FBgn0003277
InParanoid:P04052 OrthoDB:EOG4QRFJV PhylomeDB:P04052
GenomeRNAi:32100 NextBio:776837 Bgee:P04052 GermOnline:CG1554
Uniprot:P04052
Length = 1887
Score = 240 (89.5 bits), Expect = 9.4e-25, Sum P(2) = 9.4e-25
Identities = 64/162 (39%), Positives = 89/162 (54%)
Query: 446 SVIMAMKNKEQSDL---LSEALKGIRGDTLNNKLQNSWHELQYNVDLLMD--AKLNINKT 500
+V+M K Q DL LS+ +K N + H +Q N+ +L A L N
Sbjct: 255 AVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIKMLQFHVATLVDNDM 314
Query: 501 TG---AHQIDG-----LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPL 552
G A Q G +K L GK G IR N+MGKRV+F+ R+VITPDP L ID +GVP
Sbjct: 315 PGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPR 374
Query: 553 EFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDG 594
A+ LT+P VTP+N+ ++++V G + YPGA I ++G
Sbjct: 375 SIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNG 416
Score = 158 (60.7 bits), Expect = 4.7e-05, Sum P(3) = 4.7e-05
Identities = 30/64 (46%), Positives = 43/64 (67%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VITPDP L ID +GVP A+ LT+P VTP+N+ ++++V G + YPGA I
Sbjct: 353 FSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIV 412
Query: 74 NEDG 77
++G
Sbjct: 413 RDNG 416
Score = 135 (52.6 bits), Expect = 9.4e-25, Sum P(2) = 9.4e-25
Identities = 33/90 (36%), Positives = 45/90 (50%)
Query: 133 EVKQLSVVK--VFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGH 190
E++++SV + V T G GGL D G I +R C TC N T+C GH GH
Sbjct: 26 EIRRMSVTEGGVQFAETMEG-GRPKLGGLMDPRQGVI-DRTSRCQTCAGNMTECPGHFGH 83
Query: 191 IELPVPVINTLFFRDVQLLLKLSCFLCHKI 220
I+L PV + F +L+ CF C K+
Sbjct: 84 IDLAKPVFHIGFITKTIKILRCVCFYCSKM 113
Score = 43 (20.2 bits), Expect = 3.7e-15, Sum P(2) = 3.7e-15
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 98 ITPE-DQQHRAIMKEKIITRQEVVPEILKLKYYTDQE 133
+T E Q+ ++KI+ E V EILK + TD+E
Sbjct: 190 LTAEWKHQNEDSQEKKIVVSAERVWEILK--HITDEE 224
Score = 39 (18.8 bits), Expect = 4.7e-05, Sum P(3) = 4.7e-05
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 370 EADFKKLWTNEHLFLKCLIPVLDTTKEL 397
E FK W+NE L K D KE+
Sbjct: 909 EKRFKFDWSNERLMKKVFTD--DVIKEM 934
Score = 37 (18.1 bits), Expect = 4.7e-05, Sum P(3) = 4.7e-05
Identities = 8/15 (53%), Positives = 8/15 (53%)
Query: 146 ITFNSLGHTIPGGLY 160
I F LGH I G Y
Sbjct: 647 ICFLELGHDIAGRFY 661
>WB|WBGene00004411 [details] [associations]
symbol:rpc-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 GO:GO:0040035 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 KO:K03018 eggNOG:COG0086
HSSP:P04050 GO:GO:0032549 GeneTree:ENSGT00700000104490
HOGENOM:HOG000222974 OMA:PRRPLIF PANTHER:PTHR19376:SF15
EMBL:FO080771 PIR:T34157 RefSeq:NP_501127.2
ProteinModelPortal:Q18566 SMR:Q18566 STRING:Q18566 PaxDb:Q18566
EnsemblMetazoa:C42D4.8 GeneID:177491 KEGG:cel:CELE_C42D4.8
UCSC:C42D4.8 CTD:177491 WormBase:C42D4.8 InParanoid:Q18566
NextBio:897062 Uniprot:Q18566
Length = 1400
Score = 247 (92.0 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 70/207 (33%), Positives = 112/207 (54%)
Query: 412 PNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDT 471
PN+L L+ +PPV R + + G+ + + MK E L ++ LK + D
Sbjct: 243 PNDLL-LTRMPVPPV-CIRPSVVSEV--KAGTTEDDV-TMKLMEIM-LTNDVLKKHKRDG 296
Query: 472 LNNK-LQNSWHELQYNVDLLMDAKLN--INKTTGAHQIDGLKQMLDGKTGMIRQNMMGKR 528
+K L +W LQ L ++++++ + Q L GK G R N+ GKR
Sbjct: 297 APSKTLFETWEHLQIQCALYINSEMSGLPPDMQPKRAMRAFTQRLKGKQGRFRGNLCGKR 356
Query: 529 VNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGAN- 587
V+F+GR+VI+PDP L ID +GVP+ A TLT+P V N+ +R++VING +V+PGAN
Sbjct: 357 VDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVHPGANY 416
Query: 588 MIQNEDGSVVRISSSQAVQRESLAKRL 614
+++ + G+ + + R+ LAK L
Sbjct: 417 LVEKKTGNKKLLKYGK---RDELAKNL 440
Score = 169 (64.5 bits), Expect = 7.9e-08, Sum P(2) = 7.9e-08
Identities = 36/85 (42%), Positives = 55/85 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGAN-MI 72
F R+VI+PDP L ID +GVP+ A TLT+P V N+ +R++VING +V+PGAN ++
Sbjct: 359 FSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVHPGANYLV 418
Query: 73 QNEDGSVVRISSSQAVQRESLAKRL 97
+ + G+ + + R+ LAK L
Sbjct: 419 EKKTGNKKLLKYGK---RDELAKNL 440
Score = 122 (48.0 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 31/96 (32%), Positives = 43/96 (44%)
Query: 145 PITFNSLGHTIPGGLYDLAMGP------ISERGDPCTTCGNNYTKCKGHIGHIELPVPVI 198
PI N L + G L GP +S + C+TCG T C GH G+ +L VPV
Sbjct: 35 PIFNNKLYEDVEGKLQPANYGPLDPKMGVSTKTGTCSTCGLGLTDCVGHFGYFDLDVPVF 94
Query: 199 NTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQI 234
+ FF+ LL+ C C I + +F Q+
Sbjct: 95 HIGFFKLTIQLLQCICKNCSSILLTPEQHRVFSRQV 130
Score = 43 (20.2 bits), Expect = 7.9e-08, Sum P(2) = 7.9e-08
Identities = 17/72 (23%), Positives = 32/72 (44%)
Query: 123 ILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGP--ISERGDPCTTCGNN 180
+L Y D V + + +P+ ++ G +I G+ D+ + E+G N
Sbjct: 662 MLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSI--GIGDVRPSEQLLREKGQ---LVDNG 716
Query: 181 YTKCKGHIGHIE 192
Y+KC +I +E
Sbjct: 717 YSKCSQYIKELE 728
>ASPGD|ASPL0000047704 [details] [associations]
symbol:AN10316 species:162425 "Emericella nidulans"
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 EMBL:BN001307 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0032549
HOGENOM:HOG000222974 OMA:PRRPLIF PANTHER:PTHR19376:SF15
EnsemblFungi:CADANIAT00009238 Uniprot:C8VPJ2
Length = 1445
Score = 218 (81.8 bits), Expect = 2.6e-24, Sum P(2) = 2.6e-24
Identities = 51/136 (37%), Positives = 77/136 (56%)
Query: 456 QSDL-LSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKL-NINKTTGAHQIDGLKQML 513
QS++ L AL ++G + + W +Q + + +++ + +NK I G Q L
Sbjct: 303 QSNINLKNAL--LKGAPVQT-IMECWDYMQLQIAVYINSDVPGLNKADLGKPIRGFVQRL 359
Query: 514 DGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLR 573
GK G R N+ GKRV+F+GR+VI+PDP L +D + VP AK +TYP V +N L+
Sbjct: 360 KGKQGRFRGNLSGKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVNRYNKEKLQ 419
Query: 574 KMVINGPNVYPGANMI 589
+ V NG +PGAN I
Sbjct: 420 QCVRNGQKKWPGANYI 435
Score = 151 (58.2 bits), Expect = 2.6e-24, Sum P(2) = 2.6e-24
Identities = 39/131 (29%), Positives = 65/131 (49%)
Query: 110 KEKIITRQEVVPEILK-LKY--YTDQEVKQLSVVKVFSPITFNSLGHT--IPGGLYDLAM 164
K ++I R VP+++K LK+ ++ ++ VV+V FN +P G D M
Sbjct: 13 KAQVIDR---VPKVIKELKFGVLSNDDIVSQGVVEVSDRKFFNLENDRSIVPNGPLDARM 69
Query: 165 GPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPA 224
G IS + C TCG C GH GH+ L +P + +F+ V +L+ C C I +P
Sbjct: 70 G-ISNKTSTCQTCGGALQVCNGHFGHVRLVLPAFHVGYFKRVISILQEICKECSHILLPE 128
Query: 225 TSQLLFINQIK 235
+ F+ +++
Sbjct: 129 AERRAFLREMR 139
Score = 130 (50.8 bits), Expect = 0.00021, P = 0.00021
Identities = 27/59 (45%), Positives = 36/59 (61%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 72
F R+VI+PDP L +D + VP AK +TYP V +N L++ V NG +PGAN I
Sbjct: 377 FSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVNRYNKEKLQQCVRNGQKKWPGANYI 435
>POMBASE|SPBC651.08c [details] [associations]
symbol:rpc1 "DNA-directed RNA polymerase III complex
large subunit Rpc1 (predicted)" species:4896 "Schizosaccharomyces
pombe" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISO] [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006383 "transcription from RNA
polymerase III promoter" evidence=ISO] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
PomBase:SPBC651.08c GO:GO:0005737 GO:GO:0046872 GO:GO:0003677
EMBL:CU329671 GO:GO:0008270 GenomeReviews:CU329671_GR
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006383 GO:GO:0005666
GO:GO:0003899 KO:K03018 OrthoDB:EOG4X3M8C eggNOG:COG0086
GO:GO:0032549 HOGENOM:HOG000222974 OMA:PRRPLIF
PANTHER:PTHR19376:SF15 EMBL:DQ156227 PIR:T40607 RefSeq:NP_595506.1
ProteinModelPortal:O94666 STRING:O94666 EnsemblFungi:SPBC651.08c.1
GeneID:2541094 KEGG:spo:SPBC651.08c NextBio:20802207 Uniprot:O94666
Length = 1405
Score = 237 (88.5 bits), Expect = 4.0e-22, Sum P(2) = 4.0e-22
Identities = 55/141 (39%), Positives = 83/141 (58%)
Query: 457 SDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTG--AHQIDGLKQMLD 514
S L+ AL +G ++N L W +Q ++ + +++++ + + + I G Q L
Sbjct: 284 SSLIRAALS--KGTPISN-LMEQWEFMQLSIAMYINSEMPGLRPSDMPSKPIRGFCQRLK 340
Query: 515 GKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRK 574
GK G R N+ GKRV+F+GR+VI+PDP L ID + VP AK LT+P VT N L+
Sbjct: 341 GKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDQVAVPYRIAKILTFPERVTTQNKKHLQD 400
Query: 575 MVINGPNVYPGAN-MIQNEDG 594
+ NGP+V+PGAN +I E G
Sbjct: 401 CIRNGPDVHPGANYVIDRESG 421
Score = 151 (58.2 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 32/65 (49%), Positives = 41/65 (63%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGAN-MI 72
F R+VI+PDP L ID + VP AK LT+P VT N L+ + NGP+V+PGAN +I
Sbjct: 357 FSGRTVISPDPNLRIDQVAVPYRIAKILTFPERVTTQNKKHLQDCIRNGPDVHPGANYVI 416
Query: 73 QNEDG 77
E G
Sbjct: 417 DRESG 421
Score = 110 (43.8 bits), Expect = 4.0e-22, Sum P(2) = 4.0e-22
Identities = 22/78 (28%), Positives = 39/78 (50%)
Query: 158 GLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLC 217
G DL MG S + C TCG + C GH G+++L +PV + +F+ +L+ C C
Sbjct: 51 GALDLHMGT-SNKQINCATCGESMADCMGHFGYVKLALPVFHIGYFKATLTILQNICKDC 109
Query: 218 HKINIPATSQLLFINQIK 235
+ + + F+ ++
Sbjct: 110 SSVLLSDQEKRQFLKDLR 127
>GENEDB_PFALCIPARUM|PF13_0150 [details] [associations]
symbol:PF13_0150 "DNA-directed RNA polymerase 3
largest subunit" species:5833 "Plasmodium falciparum" [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0008270
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006383 EMBL:AL844509
GO:GO:0005666 GO:GO:0003899 KO:K03018 GO:GO:0032549
HOGENOM:HOG000222974 PANTHER:PTHR19376:SF15 RefSeq:XP_001350009.1
ProteinModelPortal:Q8IE49 EnsemblProtists:PF13_0150:mRNA
GeneID:814120 KEGG:pfa:PF13_0150 EuPathDB:PlasmoDB:PF3D7_1329000
Uniprot:Q8IE49
Length = 2356
Score = 206 (77.6 bits), Expect = 2.2e-19, Sum P(2) = 2.2e-19
Identities = 66/229 (28%), Positives = 117/229 (51%)
Query: 379 NEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSIL 438
++ + LK ++ V + K +I + + ++ N+ P ++ + +E+ + ++L
Sbjct: 194 DQFMKLKHILKVKENGKMIIKEEDLNSLYVLKLFKNINPYHVKLLN-IENPEKLIITALL 252
Query: 439 YSCGSLK-SVIMAMKNKEQSDL---LSEALKGIRGDTLNNKLQNSWHELQY--NVDLL-M 491
+++ SVI+ + DL LSE + +T+ N+ N + Q+ NV+ L +
Sbjct: 253 VPPNTIRPSVIIDEHGTAEDDLTCILSEITQ--LNNTIYNQCTNGYQTNQFLGNVEFLQL 310
Query: 492 DAKLNINKTTGA-HQI----------DGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPD 540
IN + A Q+ G+ Q L GK G R N+ GKRV+F+ R+VI+PD
Sbjct: 311 QITRFINSDSPAVSQLLATQNISKPGRGICQRLKGKEGRFRCNLSGKRVDFSSRTVISPD 370
Query: 541 PYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 589
P ++ID + +P A LTYP V +N+ L+ ++ NG N +PGAN I
Sbjct: 371 PNISIDEVVIPKIIAMRLTYPETVNKYNIDKLKMLIKNGCNKWPGANYI 419
Score = 136 (52.9 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 72
F R+VI+PDP ++ID + +P A LTYP V +N+ L+ ++ NG N +PGAN I
Sbjct: 361 FSSRTVISPDPNISIDEVVIPKIIAMRLTYPETVNKYNIDKLKMLIKNGCNKWPGANYI 419
Score = 121 (47.7 bits), Expect = 2.2e-19, Sum P(2) = 2.2e-19
Identities = 34/127 (26%), Positives = 58/127 (45%)
Query: 95 KRLITPEDQQHRAIMKEKIITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITF-NSLGH 153
KRLI + R + K I R + I + + +++ + S VK+ + + N+ G
Sbjct: 13 KRLIEESSMKKRFV---KDIKRNCEIKSI-RFGIMSKEDIIKYSEVKIMNREMYKNNSGI 68
Query: 154 TIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLS 213
P G+ DL +G + C TC C GH G+IEL PV + +++ + +L
Sbjct: 69 PYPYGVLDLKLGA-HKSNSVCETCNKKLINCSGHFGYIELNYPVFHIGYYKYIIHILYCI 127
Query: 214 CFLCHKI 220
C C +
Sbjct: 128 CKYCSSL 134
Score = 56 (24.8 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 29/159 (18%), Positives = 71/159 (44%)
Query: 338 DNLDQSLDKSLNKSSNQIIRKRE-QGYVMASEVEADFKKLWTNEHLFLKC-LIPV--LDT 393
++ ++ ++K + K + I K++ + + ++E + + ++ + C I L+
Sbjct: 1334 EDSEEQMNKFITKKAKFFIEKKKGKMHECNDDIEYNNTQYDNIQYNNISCNYIKSQNLEN 1393
Query: 394 TKELIATDIMFIRS-LVVPPNNLRPLS--MEQMPPVEHSRNKLYQSILYSCGSLKSVIMA 450
T + D+ FI++ +++PP + + V +N + + ++ S K+V+ +
Sbjct: 1394 THHQVNNDLSFIKNNVILPPKEYHSIFHFVNDYRNVVEIKNLMDKKKIFLNNSEKNVVQS 1453
Query: 451 MKNKEQSDLLSEALKGIRGDTLNNKLQ-NSWHELQYNVD 488
N+ S L + ++ I N K + N W N D
Sbjct: 1454 KYNR-MSKNLKKKIEIINNIYRNEKKKLNRWKTKMDNDD 1491
Score = 48 (22.0 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 32/127 (25%), Positives = 52/127 (40%)
Query: 273 VQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINA----ISYQQRK 328
V SIL G + +Y G L ++S HV +F I A I + +K
Sbjct: 2189 VYSILVEGNSL----NYVLG--LEGVDFKHIISNHVIN--VFQVLGIEAARITIINEIKK 2240
Query: 329 IIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASE---VEADFKKLWTNEHLFLK 385
++++ ID D L + + I+ G A + + A F++ TNEHLF+
Sbjct: 2241 CVEAYSIDIDIRHIMLLADIMAFTGDILGINRFGIQKARQSTLMLASFEE--TNEHLFVS 2298
Query: 386 CLIPVLD 392
+D
Sbjct: 2299 SFFKNVD 2305
>UNIPROTKB|Q8IE49 [details] [associations]
symbol:PF13_0150 "DNA-directed RNA polymerase"
species:36329 "Plasmodium falciparum 3D7" [GO:0005666 "DNA-directed
RNA polymerase III complex" evidence=ISS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0008270
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006383 EMBL:AL844509
GO:GO:0005666 GO:GO:0003899 KO:K03018 GO:GO:0032549
HOGENOM:HOG000222974 PANTHER:PTHR19376:SF15 RefSeq:XP_001350009.1
ProteinModelPortal:Q8IE49 EnsemblProtists:PF13_0150:mRNA
GeneID:814120 KEGG:pfa:PF13_0150 EuPathDB:PlasmoDB:PF3D7_1329000
Uniprot:Q8IE49
Length = 2356
Score = 206 (77.6 bits), Expect = 2.2e-19, Sum P(2) = 2.2e-19
Identities = 66/229 (28%), Positives = 117/229 (51%)
Query: 379 NEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSIL 438
++ + LK ++ V + K +I + + ++ N+ P ++ + +E+ + ++L
Sbjct: 194 DQFMKLKHILKVKENGKMIIKEEDLNSLYVLKLFKNINPYHVKLLN-IENPEKLIITALL 252
Query: 439 YSCGSLK-SVIMAMKNKEQSDL---LSEALKGIRGDTLNNKLQNSWHELQY--NVDLL-M 491
+++ SVI+ + DL LSE + +T+ N+ N + Q+ NV+ L +
Sbjct: 253 VPPNTIRPSVIIDEHGTAEDDLTCILSEITQ--LNNTIYNQCTNGYQTNQFLGNVEFLQL 310
Query: 492 DAKLNINKTTGA-HQI----------DGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPD 540
IN + A Q+ G+ Q L GK G R N+ GKRV+F+ R+VI+PD
Sbjct: 311 QITRFINSDSPAVSQLLATQNISKPGRGICQRLKGKEGRFRCNLSGKRVDFSSRTVISPD 370
Query: 541 PYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 589
P ++ID + +P A LTYP V +N+ L+ ++ NG N +PGAN I
Sbjct: 371 PNISIDEVVIPKIIAMRLTYPETVNKYNIDKLKMLIKNGCNKWPGANYI 419
Score = 136 (52.9 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMI 72
F R+VI+PDP ++ID + +P A LTYP V +N+ L+ ++ NG N +PGAN I
Sbjct: 361 FSSRTVISPDPNISIDEVVIPKIIAMRLTYPETVNKYNIDKLKMLIKNGCNKWPGANYI 419
Score = 121 (47.7 bits), Expect = 2.2e-19, Sum P(2) = 2.2e-19
Identities = 34/127 (26%), Positives = 58/127 (45%)
Query: 95 KRLITPEDQQHRAIMKEKIITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITF-NSLGH 153
KRLI + R + K I R + I + + +++ + S VK+ + + N+ G
Sbjct: 13 KRLIEESSMKKRFV---KDIKRNCEIKSI-RFGIMSKEDIIKYSEVKIMNREMYKNNSGI 68
Query: 154 TIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLS 213
P G+ DL +G + C TC C GH G+IEL PV + +++ + +L
Sbjct: 69 PYPYGVLDLKLGA-HKSNSVCETCNKKLINCSGHFGYIELNYPVFHIGYYKYIIHILYCI 127
Query: 214 CFLCHKI 220
C C +
Sbjct: 128 CKYCSSL 134
Score = 56 (24.8 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 29/159 (18%), Positives = 71/159 (44%)
Query: 338 DNLDQSLDKSLNKSSNQIIRKRE-QGYVMASEVEADFKKLWTNEHLFLKC-LIPV--LDT 393
++ ++ ++K + K + I K++ + + ++E + + ++ + C I L+
Sbjct: 1334 EDSEEQMNKFITKKAKFFIEKKKGKMHECNDDIEYNNTQYDNIQYNNISCNYIKSQNLEN 1393
Query: 394 TKELIATDIMFIRS-LVVPPNNLRPLS--MEQMPPVEHSRNKLYQSILYSCGSLKSVIMA 450
T + D+ FI++ +++PP + + V +N + + ++ S K+V+ +
Sbjct: 1394 THHQVNNDLSFIKNNVILPPKEYHSIFHFVNDYRNVVEIKNLMDKKKIFLNNSEKNVVQS 1453
Query: 451 MKNKEQSDLLSEALKGIRGDTLNNKLQ-NSWHELQYNVD 488
N+ S L + ++ I N K + N W N D
Sbjct: 1454 KYNR-MSKNLKKKIEIINNIYRNEKKKLNRWKTKMDNDD 1491
Score = 48 (22.0 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 32/127 (25%), Positives = 52/127 (40%)
Query: 273 VQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINA----ISYQQRK 328
V SIL G + +Y G L ++S HV +F I A I + +K
Sbjct: 2189 VYSILVEGNSL----NYVLG--LEGVDFKHIISNHVIN--VFQVLGIEAARITIINEIKK 2240
Query: 329 IIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASE---VEADFKKLWTNEHLFLK 385
++++ ID D L + + I+ G A + + A F++ TNEHLF+
Sbjct: 2241 CVEAYSIDIDIRHIMLLADIMAFTGDILGINRFGIQKARQSTLMLASFEE--TNEHLFVS 2298
Query: 386 CLIPVLD 392
+D
Sbjct: 2299 SFFKNVD 2305
>UNIPROTKB|E1C7P0 [details] [associations]
symbol:Gga.54058 "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007080 InterPro:IPR015699 Pfam:PF04997 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0003899
PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861
EMBL:AADN02014781 IPI:IPI00600568 Ensembl:ENSGALT00000023455
OMA:EELNHHV Uniprot:E1C7P0
Length = 160
Score = 189 (71.6 bits), Expect = 7.6e-14, P = 7.6e-14
Identities = 45/140 (32%), Positives = 74/140 (52%)
Query: 180 NYTKCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDA 239
N++ C GH GHIELP+ V N LFF + LL++ SC CH + L ++Q+K+L+
Sbjct: 3 NFSNCPGHFGHIELPLTVYNPLFFDKLYLLIRGSCLNCHMLTCTRAVVHLLLSQLKVLEH 62
Query: 240 GYVTQAKDLEETL--FNEENLRLHPAQLVQLVDSHVQSILAHGTKICD-INDYKGGEELR 296
G + DLE L F E++ ++ + ++ HV IL ++ D ++ K E R
Sbjct: 63 GLLHAVHDLEVILNRFLEQSADATALEIEEELNHHVDEIL-QSQELSDQCSNVKNVCECR 121
Query: 297 SAFVAQVLSRHV-KRKCIFC 315
+ ++Q H+ +KC C
Sbjct: 122 NKLISQFWKAHMTSKKCPNC 141
>UNIPROTKB|Q9KV29 [details] [associations]
symbol:rpoC "DNA-directed RNA polymerase subunit beta'"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
KO:K03046 OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386
PIR:G82336 RefSeq:NP_229983.1 ProteinModelPortal:Q9KV29 SMR:Q9KV29
PRIDE:Q9KV29 DNASU:2615095 GeneID:2615095 KEGG:vch:VC0329
PATRIC:20079715 Uniprot:Q9KV29
Length = 1401
Score = 162 (62.1 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 64/231 (27%), Positives = 107/231 (46%)
Query: 338 DNLDQSLDKSLNKSSNQIIRKREQGYVMASEVEADFKKL-WTNEHLFLKCLIPVLDTTKE 396
D L++ D+ K + I+ + +E E ++L TN K L L +
Sbjct: 167 DRLEEWGDEFTAKMGAEAIKDLLASMDLPAEAEQMREELDTTNSETKRKKLTKRLKLVEA 226
Query: 397 LIAT----DIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMK 452
+A+ + M + L V P +LRPL P++ R ++ L + +
Sbjct: 227 FVASGNKPEWMILTVLPVLPPDLRPLV-----PLDGGR--------FATSDLNDLYRRVI 273
Query: 453 NKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLK 510
N+ ++ L L+ D + ++N LQ +VD L+D TG+++ + L
Sbjct: 274 NR--NNRLKRLLELAAPDII---VRNEKRMLQESVDALLDNGRRGRAITGSNKRPLKSLA 328
Query: 511 QMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYP 561
M+ GK G RQN++GKRV+++GRSVIT PYL + G+P + A L P
Sbjct: 329 DMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKP 379
Score = 63 (27.2 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 167 ISERGDPCTTCGNNYTKCK---GHIGHIELPVPVINTLFFRDV 206
+ RG C CG T+ K +GHIEL PV + F + +
Sbjct: 78 LKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL 120
>TIGR_CMR|VC_0329 [details] [associations]
symbol:VC_0329 "DNA-directed RNA polymerase, beta' subunit"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386 PIR:G82336
RefSeq:NP_229983.1 ProteinModelPortal:Q9KV29 SMR:Q9KV29
PRIDE:Q9KV29 DNASU:2615095 GeneID:2615095 KEGG:vch:VC0329
PATRIC:20079715 Uniprot:Q9KV29
Length = 1401
Score = 162 (62.1 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 64/231 (27%), Positives = 107/231 (46%)
Query: 338 DNLDQSLDKSLNKSSNQIIRKREQGYVMASEVEADFKKL-WTNEHLFLKCLIPVLDTTKE 396
D L++ D+ K + I+ + +E E ++L TN K L L +
Sbjct: 167 DRLEEWGDEFTAKMGAEAIKDLLASMDLPAEAEQMREELDTTNSETKRKKLTKRLKLVEA 226
Query: 397 LIAT----DIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMK 452
+A+ + M + L V P +LRPL P++ R ++ L + +
Sbjct: 227 FVASGNKPEWMILTVLPVLPPDLRPLV-----PLDGGR--------FATSDLNDLYRRVI 273
Query: 453 NKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLK 510
N+ ++ L L+ D + ++N LQ +VD L+D TG+++ + L
Sbjct: 274 NR--NNRLKRLLELAAPDII---VRNEKRMLQESVDALLDNGRRGRAITGSNKRPLKSLA 328
Query: 511 QMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYP 561
M+ GK G RQN++GKRV+++GRSVIT PYL + G+P + A L P
Sbjct: 329 DMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKP 379
Score = 63 (27.2 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 167 ISERGDPCTTCGNNYTKCK---GHIGHIELPVPVINTLFFRDV 206
+ RG C CG T+ K +GHIEL PV + F + +
Sbjct: 78 LKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL 120
>TIGR_CMR|CHY_2317 [details] [associations]
symbol:CHY_2317 "DNA-directed RNA polymerase, beta'
subunit" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 InterPro:IPR012756
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 KO:K03046 TIGRFAMs:TIGR02388 OMA:DINDKHI
ProtClustDB:PRK00566 TIGRFAMs:TIGR02386 HOGENOM:HOG000218387
RefSeq:YP_361126.1 ProteinModelPortal:Q3A9Q8 SMR:Q3A9Q8
STRING:Q3A9Q8 PRIDE:Q3A9Q8 GeneID:3727667 KEGG:chy:CHY_2317
PATRIC:21277703 BioCyc:CHYD246194:GJCN-2316-MONOMER Uniprot:Q3A9Q8
Length = 1152
Score = 142 (55.0 bits), Expect = 6.4e-08, Sum P(2) = 6.4e-08
Identities = 35/88 (39%), Positives = 46/88 (52%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGA--HQIDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
++N LQ VD L+D TG + L ML GK G RQN++GKRV+++G
Sbjct: 281 VRNEKRMLQEAVDALIDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSG 340
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYP 561
RSVI P L + G+P E A L P
Sbjct: 341 RSVIVVGPELKLHQCGLPKEMALELFKP 368
Score = 70 (29.7 bits), Expect = 6.4e-08, Sum P(2) = 6.4e-08
Identities = 29/95 (30%), Positives = 43/95 (45%)
Query: 170 RGDPCTTCGNNYTKCK---GHIGHIELPVPVINTLFFRDVQ----LLLKLSCFLCHKINI 222
+G C CG T+ K +GHIEL PV + +F+ + LLL +S K+
Sbjct: 71 KGVVCDRCGVEVTRSKVRRERLGHIELAAPVSHIWYFKGIPSRMGLLLDMSPRSLEKV-- 128
Query: 223 PATSQLLFINQIKLLDAGYVTQAKD--LEETLFNE 255
L F++ I ++D G K L ET + E
Sbjct: 129 -----LYFVSYI-VIDPGETPLLKKQLLTETEYRE 157
Score = 43 (20.2 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 21/123 (17%), Positives = 49/123 (39%)
Query: 356 IRKREQGYVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNL 415
+R+ G++ E+ A +W + + + + +LD + + + F+ +V+ P
Sbjct: 87 VRRERLGHI---ELAAPVSHIWYFKGIPSRMGL-LLDMSPRSLEKVLYFVSYIVIDPGET 142
Query: 416 RPLSMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKG-IRGDTLNN 474
L + + E+ + + G I + + D LS LK I+ T
Sbjct: 143 PLLKKQLLTETEYREAREKYGNAFKAGMGAEAIKELLAEIDLDELSAELKAEIKESTGQR 202
Query: 475 KLQ 477
+++
Sbjct: 203 RIR 205
>UNIPROTKB|P37871 [details] [associations]
symbol:rpoC "DNA-directed RNA polymerase subunit beta'"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0005515 "protein binding" evidence=IPI] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0046677
GO:GO:0006351 EMBL:AL009126 GenomeReviews:AL009126_GR
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
EMBL:D64127 EMBL:L24376 KO:K03046 ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 HOGENOM:HOG000218387 EMBL:L43593 PIR:G69698
RefSeq:NP_387989.2 ProteinModelPortal:P37871 SMR:P37871
DIP:DIP-49022N IntAct:P37871 PRIDE:P37871
EnsemblBacteria:EBBACT00000003012 GeneID:935977 KEGG:bsu:BSU01080
PATRIC:18971725 GenoList:BSU01080 BioCyc:BSUB:BSU01080-MONOMER
Uniprot:P37871
Length = 1199
Score = 147 (56.8 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 36/88 (40%), Positives = 47/88 (53%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGA--HQIDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
+QN LQ VD L+D TG + L ML GK G RQN++GKRV+++G
Sbjct: 281 VQNEKRMLQEAVDALIDNGRRGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSG 340
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYP 561
RSVI P+L + G+P E A L P
Sbjct: 341 RSVIVVGPHLKMYQCGLPKEMALELFKP 368
Score = 65 (27.9 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 170 RGDPCTTCGNNYTKCK---GHIGHIELPVPVINTLFFRDV 206
+G C CG T+ K +GHIEL PV + +F+ +
Sbjct: 71 KGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGI 110
>UNIPROTKB|P0A8T7 [details] [associations]
symbol:rpoC "RNA polymerase, beta' subunit" species:83333
"Escherichia coli K-12" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0016020 "membrane" evidence=IDA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005737 GO:GO:0016020
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0006351 EMBL:U00006
Gene3D:2.40.40.20 InterPro:IPR009010 PDB:3IYD PDBsum:3IYD
GO:GO:0003899 EMBL:V00339 eggNOG:COG0086 PDB:3LU0 PDBsum:3LU0
EMBL:V00340 EMBL:M38293 EMBL:M38303 KO:K03046 HOGENOM:HOG000218386
OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386 EMBL:M38305
EMBL:M38288 PIR:A00695 RefSeq:NP_418415.1 RefSeq:YP_491473.1
PDB:2AUK PDB:2LMC PDBsum:2AUK PDBsum:2LMC ProteinModelPortal:P0A8T7
SMR:P0A8T7 DIP:DIP-35803N IntAct:P0A8T7 MINT:MINT-1220667
PhosSite:P010445 PaxDb:P0A8T7 PRIDE:P0A8T7
EnsemblBacteria:EBESCT00000001546 EnsemblBacteria:EBESCT00000001547
EnsemblBacteria:EBESCT00000001548 EnsemblBacteria:EBESCT00000018189
GeneID:12933965 GeneID:948487 KEGG:ecj:Y75_p3209 KEGG:eco:b3988
PATRIC:32123497 EchoBASE:EB0888 EcoGene:EG10895
BioCyc:EcoCyc:RPOC-MONOMER BioCyc:ECOL316407:JW3951-MONOMER
BioCyc:MetaCyc:RPOC-MONOMER EvolutionaryTrace:P0A8T7
Genevestigator:P0A8T7 Uniprot:P0A8T7
Length = 1407
Score = 154 (59.3 bits), Expect = 9.2e-08, Sum P(2) = 9.2e-08
Identities = 35/88 (39%), Positives = 51/88 (57%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
++N LQ VD L+D TG+++ + L M+ GK G RQN++GKRV+++G
Sbjct: 292 VRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSG 351
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYP 561
RSVIT PYL + G+P + A L P
Sbjct: 352 RSVITVGPYLRLHQCGLPKKMALELFKP 379
Score = 58 (25.5 bits), Expect = 9.2e-08, Sum P(2) = 9.2e-08
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 167 ISERGDPCTTCGNNYTKCK---GHIGHIELPVPVINTLFFRDV 206
+ RG C CG T+ K +GHIEL P + F + +
Sbjct: 78 LKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL 120
>TIGR_CMR|CPS_4768 [details] [associations]
symbol:CPS_4768 "DNA-directed RNA polymerase, beta'
subunit" species:167879 "Colwellia psychrerythraea 34H" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0006351
EMBL:CP000083 GenomeReviews:CP000083_GR Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 RefSeq:YP_271412.1 ProteinModelPortal:Q47UW0
SMR:Q47UW0 STRING:Q47UW0 PRIDE:Q47UW0 GeneID:3519900
KEGG:cps:CPS_4768 PATRIC:21472353
BioCyc:CPSY167879:GI48-4774-MONOMER Uniprot:Q47UW0
Length = 1406
Score = 148 (57.2 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 34/88 (38%), Positives = 51/88 (57%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
++N LQ +VD L+D TG+++ + L M+ GK G RQN++GKRV+++G
Sbjct: 292 VRNEKRMLQESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSG 351
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYP 561
RSVIT P L + G+P + A L P
Sbjct: 352 RSVITVGPTLKLHQCGLPKKMALELFKP 379
Score = 63 (27.2 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 25/95 (26%), Positives = 39/95 (41%)
Query: 167 ISERGDPCTTCGNNYTKCK---GHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIP 223
+ RG C CG T K +GHIEL PV + F + L ++ L + +
Sbjct: 78 LKHRGVICEKCGVEVTLTKVRRDRMGHIELASPVAHIWFLKS--LPSRIGLLL--DMTLR 133
Query: 224 ATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENL 258
++L+ + + G T K + L EE L
Sbjct: 134 DIERVLYFESYVVTEPGMTTLEKS--QILTEEEYL 166
>TIGR_CMR|SO_0225 [details] [associations]
symbol:SO_0225 "DNA-directed RNA polymerase, beta subunit"
species:211586 "Shewanella oneidensis MR-1" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0006351
EMBL:AE014299 GenomeReviews:AE014299_GR Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 RefSeq:NP_715865.1 ProteinModelPortal:Q8EK73
SMR:Q8EK73 PRIDE:Q8EK73 GeneID:1168108 KEGG:son:SO_0225
PATRIC:23520143 Uniprot:Q8EK73
Length = 1405
Score = 148 (57.2 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 34/88 (38%), Positives = 51/88 (57%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
++N LQ +VD L+D TG+++ + L M+ GK G RQN++GKRV+++G
Sbjct: 292 VRNEKRMLQESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSG 351
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYP 561
RSVIT P L + G+P + A L P
Sbjct: 352 RSVITVGPTLRLHQCGLPKKMALELFKP 379
Score = 62 (26.9 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 167 ISERGDPCTTCGNNYTKCK---GHIGHIELPVPVINTLFFRDV 206
+ RG C CG T+ K +GHIEL PV + F + +
Sbjct: 78 LKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSL 120
>TIGR_CMR|BA_0103 [details] [associations]
symbol:BA_0103 "DNA-directed RNA polymerase, beta' subunit"
species:198094 "Bacillus anthracis str. Ames" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 KO:K03046 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 EMBL:X89230 RefSeq:NP_842671.2
RefSeq:YP_016708.1 RefSeq:YP_026389.1 ProteinModelPortal:P77819
IntAct:P77819 DNASU:1086436 EnsemblBacteria:EBBACT00000011911
EnsemblBacteria:EBBACT00000018208 EnsemblBacteria:EBBACT00000020960
GeneID:1086436 GeneID:2818165 GeneID:2851002 KEGG:ban:BA_0103
KEGG:bar:GBAA_0103 KEGG:bat:BAS0103 HOGENOM:HOG000218387
BioCyc:BANT260799:GJAJ-114-MONOMER
BioCyc:BANT261594:GJ7F-116-MONOMER Uniprot:P77819
Length = 1203
Score = 143 (55.4 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 36/88 (40%), Positives = 46/88 (52%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGA--HQIDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
+QN LQ VD L+D TG + L ML GK G RQN++GKRV+++G
Sbjct: 281 VQNEKRMLQEAVDALIDNGRRGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSG 340
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYP 561
RSVI P L + G+P E A L P
Sbjct: 341 RSVIVVGPNLKMYQCGLPKEMALELFKP 368
Score = 65 (27.9 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 170 RGDPCTTCGNNYTKCK---GHIGHIELPVPVINTLFFRDV 206
+G C CG T+ K +GHIEL PV + +F+ +
Sbjct: 71 KGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGI 110
>TIGR_CMR|SPO_3507 [details] [associations]
symbol:SPO_3507 "DNA-directed RNA polymerase, beta'
subunit" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
KO:K03046 HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 RefSeq:YP_168702.1 ProteinModelPortal:Q5LMQ6
SMR:Q5LMQ6 PRIDE:Q5LMQ6 GeneID:3196349 KEGG:sil:SPO3507
PATRIC:23380483 Uniprot:Q5LMQ6
Length = 1413
Score = 150 (57.9 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 36/88 (40%), Positives = 49/88 (55%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
++N LQ +VD L D TGA++ + L ML GK G RQN++GKRV+F+G
Sbjct: 295 VRNEKRMLQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSG 354
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYP 561
RSVI P L + G+P + A L P
Sbjct: 355 RSVIVTGPELKLHQCGLPKKMALELFKP 382
Score = 58 (25.5 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 170 RGDPCTTCGNNYTKCK---GHIGHIELPVPVINTLFFRDV 206
RG C CG T K +GHIEL PV + F + +
Sbjct: 83 RGVVCEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLKSL 122
>TIGR_CMR|NSE_0677 [details] [associations]
symbol:NSE_0677 "DNA-directed RNA polymerase, beta'
subunit" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0003899 eggNOG:COG0086 KO:K03046
HOGENOM:HOG000218386 TIGRFAMs:TIGR02386 OMA:VIAEWDP
RefSeq:YP_506555.1 ProteinModelPortal:Q2GD91 SMR:Q2GD91
STRING:Q2GD91 PRIDE:Q2GD91 GeneID:3931848 KEGG:nse:NSE_0677
PATRIC:22681373 BioCyc:NSEN222891:GHFU-691-MONOMER Uniprot:Q2GD91
Length = 1375
Score = 148 (57.2 bits), Expect = 3.1e-07, Sum P(3) = 3.1e-07
Identities = 64/227 (28%), Positives = 100/227 (44%)
Query: 378 TNEHLFLKCLIPVLDTTKELIATDI----MFIRSLVVPPNNLRPLSMEQMPPVEHSRNKL 433
TN + K +I L ++ + +D M + + V P +LRPL M + + + L
Sbjct: 209 TNSEVKKKKIIKTLRLVEQFLGSDSRPVDMILDVIPVMPPDLRPLVM--LDGGRFATSDL 266
Query: 434 YQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMD- 492
+ LY +SVI +N L+ I +NN+ + LQ VD L D
Sbjct: 267 --NALY-----RSVIN--RNNRLKSLIYLKAPNI---IINNERRM----LQEAVDALFDN 310
Query: 493 -AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVP 551
+ + K + + ML GK G RQN++GKRV+++GRSVI P L + G+P
Sbjct: 311 GRRAKVIKGSNKRPYKSISDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPALELHQCGLP 370
Query: 552 LEFAKTLTYPVPVTPWNVTLLRKMVING--PNVYPGANMIQNEDGSV 596
+ A L P + K+ + G P + M+QNE V
Sbjct: 371 KKIALELFKPF--------IYSKLELYGIAPTIKTARRMVQNEQPEV 409
Score = 64 (27.6 bits), Expect = 3.1e-07, Sum P(3) = 3.1e-07
Identities = 23/84 (27%), Positives = 36/84 (42%)
Query: 167 ISERGDPCTTCGNNYTKCK---GHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIP 223
I G C CG T + +GHIEL PV + F + L K+ C L + +
Sbjct: 78 IKYSGVICERCGVEVTSSRVRRERMGHIELASPVAHIWFLKS--LPSKI-CILLD-LTLK 133
Query: 224 ATSQLLFINQIKLLDAGYVTQAKD 247
++L+ ++D G T K+
Sbjct: 134 NVEKVLYFELYIVIDPGVTTFTKN 157
Score = 40 (19.1 bits), Expect = 3.1e-07, Sum P(3) = 3.1e-07
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 583 YPGANMIQNEDGSVVRISSS 602
+ AN+I + DG+ V +S S
Sbjct: 943 FTNANLITDRDGNYVVLSRS 962
>TAIR|locus:2061151 [details] [associations]
symbol:NRPD1B "nuclear RNA polymerase D1B" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;ISS;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=ISS]
[GO:0000418 "DNA-directed RNA polymerase IV complex" evidence=IPI]
[GO:0006306 "DNA methylation" evidence=RCA;IMP] [GO:0000419
"DNA-directed RNA polymerase V complex" evidence=IDA;IPI]
[GO:0030880 "RNA polymerase complex" evidence=IPI] [GO:0035194
"posttranscriptional gene silencing by RNA" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0016604 "nuclear body" evidence=IDA] [GO:0030422
"production of siRNA involved in RNA interference"
evidence=IGI;IMP] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=RCA] [GO:0006261 "DNA-dependent DNA
replication" evidence=RCA] [GO:0006275 "regulation of DNA
replication" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0006354 "DNA-dependent transcription, elongation"
evidence=RCA] [GO:0009555 "pollen development" evidence=RCA]
[GO:0016444 "somatic cell DNA recombination" evidence=RCA]
[GO:0016568 "chromatin modification" evidence=RCA] [GO:0031047
"gene silencing by RNA" evidence=RCA] [GO:0048451 "petal formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0051567 "histone H3-K9 methylation" evidence=RCA] [GO:0051726
"regulation of cell cycle" evidence=RCA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR015801 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 SMART:SM00663 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0005730 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 GO:GO:0005507 GO:GO:0048038 GO:GO:0009308
Gene3D:3.10.450.40 GO:GO:0030422 GO:GO:0006306 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0016604 EMBL:AF002109 GO:GO:0003899
eggNOG:COG0086 GO:GO:0000418 InterPro:IPR021602 Pfam:PF11523
EMBL:AY826516 EMBL:AY927744 EMBL:DQ020656 IPI:IPI00537496
PIR:D84824 PIR:E84824 RefSeq:NP_181532.2 UniGene:At.37106
ProteinModelPortal:Q5D869 SMR:Q5D869 DIP:DIP-48678N IntAct:Q5D869
STRING:Q5D869 PaxDb:Q5D869 PRIDE:Q5D869 EnsemblPlants:AT2G40030.1
GeneID:818591 KEGG:ath:AT2G40030 TAIR:At2g40030
HOGENOM:HOG000082864 InParanoid:Q5D869 KO:K16251 OMA:QSDSWDG
PhylomeDB:Q5D869 ProtClustDB:CLSN2681712 Genevestigator:Q5D869
GO:GO:0000419 Uniprot:Q5D869
Length = 1976
Score = 113 (44.8 bits), Expect = 5.8e-07, Sum P(3) = 5.8e-07
Identities = 26/76 (34%), Positives = 42/76 (55%)
Query: 146 ITFNSLGHTIPGGLYDLAMGPISERGDPCTTCG-NNYTKCKGHIGHIELPVPVINTLFFR 204
I+ +++ H P L + +G E G C +CG KC+GH G+I+LPVP+ +
Sbjct: 32 ISESAINH--PSQLTNAFLGLPLEFGK-CESCGATEPDKCEGHFGYIQLPVPIYHPAHVN 88
Query: 205 DVQLLLKLSCFLCHKI 220
+++ +L L C C KI
Sbjct: 89 ELKQMLSLLCLKCLKI 104
Score = 105 (42.0 bits), Expect = 5.8e-07, Sum P(3) = 5.8e-07
Identities = 37/133 (27%), Positives = 63/133 (47%)
Query: 455 EQSDLLSE--ALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTT-GAHQID---G 508
E D+L + A+K R N + + + V +D L + T A ID G
Sbjct: 238 ELKDVLKKVIAIKSSRSGETNFESHKAEASEMFRV---VDTYLQVRGTAKAARNIDMRYG 294
Query: 509 LKQMLDGK-----TGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVP 563
+ ++ D T +R + K F+ RSVIT D Y +++ +G+P+E A+ +T+
Sbjct: 295 VSKISDSSSSKAWTEKMRTLFIRKGSGFSSRSVITGDAYRHVNEVGIPIEIAQRITFEER 354
Query: 564 VTPWNVTLLRKMV 576
V+ N L+K+V
Sbjct: 355 VSVHNRGYLQKLV 367
Score = 38 (18.4 bits), Expect = 5.8e-07, Sum P(3) = 5.8e-07
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 572 LRKMVINGPNVYPGANMIQNEDGSVV 597
LRK++ P+ YP + I ++D + V
Sbjct: 1750 LRKIM--HPSAYPDGDPISDDDKTFV 1773
Score = 37 (18.1 bits), Expect = 7.3e-07, Sum P(3) = 7.3e-07
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 571 LLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQR 607
+L ++VI G + AN+I N I + A +R
Sbjct: 1031 VLLEIVIKGDSRICSANIIWNSSDMTTWIRNRHASRR 1067
>TIGR_CMR|ECH_0951 [details] [associations]
symbol:ECH_0951 "DNA-directed RNA polymerase, beta'
subunit" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
KO:K03046 HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 RefSeq:YP_507739.1 ProteinModelPortal:Q2GFP4
STRING:Q2GFP4 PRIDE:Q2GFP4 GeneID:3927754 KEGG:ech:ECH_0951
PATRIC:20577284 BioCyc:ECHA205920:GJNR-954-MONOMER Uniprot:Q2GFP4
Length = 1410
Score = 141 (54.7 bits), Expect = 8.6e-07, Sum P(2) = 8.6e-07
Identities = 59/192 (30%), Positives = 84/192 (43%)
Query: 409 VVPPNNLRPL-SMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGI 467
++PP+ LRPL S+E P N Y++I+ +++ L + LK +
Sbjct: 244 ILPPD-LRPLVSLENGRPAVSDLNHHYRTII----------------NRNNRLGKLLK-L 285
Query: 468 RGDTLNNKLQNSWHELQYNVDLLMDAKLNI---NKTTGAHQIDGLKQMLDGKTGMIRQNM 524
+ ++N LQ VD L D+ NK L ML GK G RQN+
Sbjct: 286 NPPAI--MIRNEKRMLQEAVDALFDSTRRSYVSNKAGSVGYKKSLSDMLKGKQGRFRQNL 343
Query: 525 MGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYP 584
+GKRV+++GRSVI P L + G+P + A L P + KM P V
Sbjct: 344 LGKRVDYSGRSVIVVGPNLKLHQCGLPKKMALELFKPF------ICSKLKMYGIVPTVKL 397
Query: 585 GANMIQNEDGSV 596
MIQNE V
Sbjct: 398 ANKMIQNEKPEV 409
Score = 62 (26.9 bits), Expect = 8.6e-07, Sum P(2) = 8.6e-07
Identities = 22/91 (24%), Positives = 41/91 (45%)
Query: 170 RGDPCTTCGNNYTKCK---GHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATS 226
RG C CG T K +GHIEL PV + F + L ++ L + +
Sbjct: 80 RGVVCEKCGVEVTSSKVRRERMGHIELVSPVAHVWFLKS--LPSRIGALLDMPLKL--IE 135
Query: 227 QLLFINQIKLLD--AGYVTQAKDLEETLFNE 255
+L+ ++D A +++ + + E+ +N+
Sbjct: 136 NILYSGDFVVIDPIATPLSKGEVISESAYNQ 166
>TIGR_CMR|CBU_0232 [details] [associations]
symbol:CBU_0232 "DNA-directed RNA polymerase beta'
subunit" species:227377 "Coxiella burnetii RSA 493" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0006351
EMBL:AE016828 GenomeReviews:AE016828_GR Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 RefSeq:NP_819276.1 ProteinModelPortal:Q83ET0
SMR:Q83ET0 PRIDE:Q83ET0 GeneID:1208113 KEGG:cbu:CBU_0232
PATRIC:17929155 BioCyc:CBUR227377:GJ7S-238-MONOMER Uniprot:Q83ET0
Length = 1414
Score = 140 (54.3 bits), Expect = 8.8e-07, Sum P(2) = 8.8e-07
Identities = 33/88 (37%), Positives = 49/88 (55%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAH--QIDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
++N LQ VD L+D G++ Q+ L M+ GK+G RQN++GKRV+++G
Sbjct: 292 VRNEKRMLQEAVDALLDNGRRGRAILGSNRRQLKSLADMIKGKSGRFRQNLLGKRVDYSG 351
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYP 561
RSVI P L + G+P + A L P
Sbjct: 352 RSVIVVGPTLKLHQAGLPKKMALELFKP 379
Score = 63 (27.2 bits), Expect = 8.8e-07, Sum P(2) = 8.8e-07
Identities = 34/140 (24%), Positives = 56/140 (40%)
Query: 121 PEILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNN 180
PE + + + + + L K+F PI + G Y + RG C CG
Sbjct: 41 PETINYRTFKPER-EGLFCAKIFGPIK----DYECLCGKYKR----LKHRGVICEKCGVE 91
Query: 181 YTKCK---GHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLL 237
T K +GHIEL PV + + + L ++ L + + ++L+ ++
Sbjct: 92 VTLAKVRRERMGHIELASPVAHIWYLKS--LPSRIGLLL--DVTLRDIERILYFEAYVVV 147
Query: 238 DAGYVTQAKDLE-ETLFNEE 256
D G DLE L +EE
Sbjct: 148 DPGMT----DLEPRQLLSEE 163
Score = 44 (20.5 bits), Expect = 7.7e-05, Sum P(2) = 7.7e-05
Identities = 43/189 (22%), Positives = 81/189 (42%)
Query: 122 EILKLKYYTDQEVKQLSVVKVFSPITFNSLGHTIPG-GLYDLAM-GPISERGDPCTTCGN 179
+ L++K + +EV+ S +V P T N GL+ + GPI + C CG
Sbjct: 18 DALRIKLASPEEVRSWSYGEVKKPETINYRTFKPEREGLFCAKIFGPIKDY--ECL-CGK 74
Query: 180 NYTKCKGHIGHI--ELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLL 237
Y + K H G I + V V R+ ++L+ + H + + + + LL
Sbjct: 75 -YKRLK-HRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWYLKSLPSRIGL----LL 128
Query: 238 DAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRS 297
D VT +D+E L+ E + + P + D + +L+ + + +Y G++ +
Sbjct: 129 D---VT-LRDIERILYFEAYVVVDPG----MTDLEPRQLLSEEAYLDALEEY--GDDFTA 178
Query: 298 AFVAQVLSR 306
A+ + R
Sbjct: 179 LMGAEAIQR 187
>TIGR_CMR|APH_1023 [details] [associations]
symbol:APH_1023 "DNA-directed RNA polymerase, beta'
subunit" species:212042 "Anaplasma phagocytophilum HZ" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
GO:GO:0006351 EMBL:CP000235 GenomeReviews:CP000235_GR
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
KO:K03046 RefSeq:YP_505582.1 ProteinModelPortal:Q2GJ69
STRING:Q2GJ69 PRIDE:Q2GJ69 GeneID:3930013 KEGG:aph:APH_1023
PATRIC:20950796 HOGENOM:HOG000218386 OMA:DINDKHI
ProtClustDB:PRK00566 BioCyc:APHA212042:GHPM-1030-MONOMER
TIGRFAMs:TIGR02386 Uniprot:Q2GJ69
Length = 1409
Score = 138 (53.6 bits), Expect = 8.8e-07, Sum P(2) = 8.8e-07
Identities = 58/192 (30%), Positives = 86/192 (44%)
Query: 409 VVPPNNLRPL-SMEQMPPVEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGI 467
V+PP+ LRPL S+E P N Y++I+ +++ L + LK +
Sbjct: 244 VLPPD-LRPLVSLENGRPAVSDLNHHYRTII----------------NRNNRLEKLLK-L 285
Query: 468 RGDTLNNKLQNSWHELQYNVDLLMDAKLN--INKTTGAHQID-GLKQMLDGKTGMIRQNM 524
+ ++N LQ VD L D+ ++ G+ L ML GK G RQN+
Sbjct: 286 NPPAI--MIRNEKRMLQEAVDALFDSSRRSYVSSRVGSMGYKKSLSDMLKGKQGRFRQNL 343
Query: 525 MGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYP 584
+GKRV+++GRSVI P L + G+P + A L P + KM P V
Sbjct: 344 LGKRVDYSGRSVIVVGPSLKLHQCGLPKKMALELFKPF------ICSKLKMYGIAPTVKL 397
Query: 585 GANMIQNEDGSV 596
MIQ+E V
Sbjct: 398 ANKMIQSEKPDV 409
Score = 65 (27.9 bits), Expect = 8.8e-07, Sum P(2) = 8.8e-07
Identities = 24/91 (26%), Positives = 39/91 (42%)
Query: 170 RGDPCTTCGNNYTKCK---GHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATS 226
RG C CG T K +GHIEL PV + F + L ++ L + + A
Sbjct: 80 RGIVCEKCGVEVTSSKVRRERMGHIELVSPVAHIWFLKS--LPSRIGALL--DMPLKAIE 135
Query: 227 QLLFINQIKLLDAGYVTQAKD--LEETLFNE 255
+L+ ++D AK + E ++N+
Sbjct: 136 NILYSGDFVVIDPVATPFAKGEVISEVVYNQ 166
>TIGR_CMR|DET_0604 [details] [associations]
symbol:DET_0604 "DNA-directed RNA polymerase, beta'
subunit" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
GO:GO:0006351 EMBL:CP000027 GenomeReviews:CP000027_GR
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
KO:K03046 OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386
HOGENOM:HOG000218387 RefSeq:YP_181346.1 ProteinModelPortal:Q3Z8V3
SMR:Q3Z8V3 STRING:Q3Z8V3 PRIDE:Q3Z8V3 GeneID:3230059
KEGG:det:DET0604 PATRIC:21608279 BioCyc:DETH243164:GJNF-605-MONOMER
Uniprot:Q3Z8V3
Length = 1295
Score = 141 (54.7 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 42/145 (28%), Positives = 66/145 (45%)
Query: 476 LQNSWHELQYNVDLLMD--AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
++N LQ VD L+D + G H+ L +L GK G RQN++GKRV+++G
Sbjct: 348 IRNEKRMLQEAVDSLIDNGRRGKSVAVNGDHKAKSLSDLLRGKQGRFRQNLLGKRVDYSG 407
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVING--PNVYPGANMIQN 591
RSVI P L + G+P A L P ++ ++V +G PN+ +++
Sbjct: 408 RSVIVVGPSLKLSQCGLPRRMALELFKPF--------VMHRLVRDGLAPNIKSARRLVER 459
Query: 592 EDGSVVRISSSQAVQRESLAKRLIT 616
V I +R + R T
Sbjct: 460 ARPEVYDILEEVVKERPVMLNRAPT 484
Score = 59 (25.8 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 20/54 (37%), Positives = 25/54 (46%)
Query: 167 ISERGDPCTTCGNNYTKCK---GHIGHIELPVPVINTLFFRDVQ----LLLKLS 213
I +G C CG + K +GHIEL PV + F R + LLL LS
Sbjct: 68 IRYKGIICDKCGVEIARAKVRRERMGHIELACPVGHIWFTRGIPSRVGLLLNLS 121
>TIGR_CMR|CJE_0529 [details] [associations]
symbol:CJE_0529 "DNA-directed RNA polymerase, beta'
subunit" species:195099 "Campylobacter jejuni RM1221" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0006351
EMBL:CP000025 GenomeReviews:CP000025_GR Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
HOGENOM:HOG000218386 ProtClustDB:PRK00566 TIGRFAMs:TIGR02386
RefSeq:YP_178547.1 ProteinModelPortal:Q5HVY8 SMR:Q5HVY8
STRING:Q5HVY8 GeneID:3231290 KEGG:cjr:CJE0529 PATRIC:20042780
OMA:VIAEWDP BioCyc:CJEJ195099:GJC0-544-MONOMER Uniprot:Q5HVY8
Length = 1517
Score = 154 (59.3 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 35/88 (39%), Positives = 50/88 (56%)
Query: 476 LQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDGKTGMIRQNMMGKRVNFAG 533
++N LQ VD L D N GA++ + L +++ GK G RQN++GKRV+F+G
Sbjct: 314 IRNEKRMLQEAVDALFDNGRRANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSG 373
Query: 534 RSVITPDPYLNIDSIGVPLEFAKTLTYP 561
RSVI P L +D G+P + A L P
Sbjct: 374 RSVIVVGPKLRMDQCGLPKKMALELFKP 401
Score = 50 (22.7 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 170 RGDPCTTCGNNYTKCK---GHIGHIELPVPV 197
+G C CG K +GHIEL PV
Sbjct: 82 KGVKCEKCGVEVANSKVRRSRMGHIELVTPV 112
Score = 42 (19.8 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 578 NGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPEG 619
N PN P A+ I EDG V + + +A ++ +L ++ +G
Sbjct: 1067 NVPNRIPFASEILVEDGEPV-VQNIKAGEKGTLKFYILKGDG 1107
>UNIPROTKB|P0A674 [details] [associations]
symbol:rpoC "DNA-directed RNA polymerase subunit beta'"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005886 GO:GO:0040007
GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0003677 GO:GO:0006351 EMBL:BX842574
Gene3D:2.40.40.20 InterPro:IPR009010 DrugBank:DB01045 GO:GO:0003899
eggNOG:COG0086 EMBL:L27989 KO:K03046 HOGENOM:HOG000218386
OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386 PIR:G70535
RefSeq:NP_215182.1 RefSeq:NP_335108.1 RefSeq:YP_006514010.1
ProteinModelPortal:P0A674 SMR:P0A674 IntAct:P0A674 PRIDE:P0A674
EnsemblBacteria:EBMYCT00000001410 EnsemblBacteria:EBMYCT00000072799
GeneID:13318555 GeneID:888177 GeneID:925980 KEGG:mtc:MT0696
KEGG:mtu:Rv0668 KEGG:mtv:RVBD_0668 PATRIC:18123251
TubercuList:Rv0668 DrugBank:DB01201 Uniprot:P0A674
Length = 1316
Score = 149 (57.5 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 97/413 (23%), Positives = 171/413 (41%)
Query: 170 RGDPCTTCGNNYTKCK---GHIGHIELPVPVINTLFFRDVQ----LLLKLSCFLCHKIN- 221
+G C CG T+ K +GHIEL PV + +F+ V LL L+ KI
Sbjct: 71 KGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDLAPKDLEKIIY 130
Query: 222 -----IPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSI 276
I + + + N++ L+A + K +E+ E R Q +++ + +
Sbjct: 131 FAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEAR------AQKLEADLAEL 184
Query: 277 LAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRKCIFCATPINAISYQQRKIIKSFKID 336
A G K + G E + R + R +T ++ +Q +I +
Sbjct: 185 EAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWST-FTKLAPKQ--LIVDENLY 241
Query: 337 KDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVEADFKKLWTNE--HLFLKCL--IPVLD 392
++ +D+ + + I+K + + + +E E+ + + N L+ L + V+
Sbjct: 242 RELVDRYGEYFTGAMGAESIQKLIENFDIDAEAES-LRDVIRNGKGQKKLRALKRLKVVA 300
Query: 393 TTKELIATDI-MFIRSLVVPPNNLRPL-SMEQMPPVEHSRNKLYQSILYSCGSLKSVIMA 450
++ + + M + ++ V P LRP+ ++ N LY+ ++ LK +I
Sbjct: 301 AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLI-- 358
Query: 451 MKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTTGA--HQIDG 508
DL G +NN+ + LQ +VD L D TG +
Sbjct: 359 -------DL------GAPEIIVNNEKRM----LQESVDALFDNGRRGRPVTGPGNRPLKS 401
Query: 509 LKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFAKTLTYP 561
L +L GK G RQN++GKRV+++GRSVI P L + G+P A L P
Sbjct: 402 LSDLLKGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKP 454
>UNIPROTKB|P0C504 [details] [associations]
symbol:rpoC1 "DNA-directed RNA polymerase subunit beta'"
species:4530 "Oryza sativa" [GO:0009536 "plastid" evidence=IC]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
SMART:SM00663 GO:GO:0009507 GO:GO:0009536 GO:GO:0003677
GO:GO:0006351 EMBL:AY522331 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 HAMAP:MF_01323 ProteinModelPortal:P0C504
Gramene:P0C504 HOGENOM:HOG000054284 Genevestigator:P0C504
Uniprot:P0C504
Length = 682
Score = 132 (51.5 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 50/176 (28%), Positives = 80/176 (45%)
Query: 387 LIPVLDTTKELIATDI----MFIRSLVVPPNNLRPLSMEQMPPVEHSR-NKLYQSILYSC 441
LI + K I T++ M + L V P LRP+ V S N+LY+ ++
Sbjct: 244 LIRRMQLAKHFIQTNVEPEWMVLCLLPVLPPELRPIVYRSGDKVVTSDINELYKRVIRRN 303
Query: 442 GSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTT 501
+L + ++ +DL+ KL +Q VD L+D+ T
Sbjct: 304 NNL-AYLLKRSELAPADLVM----------CQEKL------VQEAVDTLLDSGSRGQPTR 346
Query: 502 GAHQ--IDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFA 555
H L +++GK G R+ ++GKRV+++GRSVI P L++ G+PLE A
Sbjct: 347 DGHNKVYKSLSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHQCGLPLEIA 402
>UNIPROTKB|P0C505 [details] [associations]
symbol:rpoC1 "DNA-directed RNA polymerase subunit beta'"
species:39946 "Oryza sativa Indica Group" [GO:0009536 "plastid"
evidence=IC] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 SMART:SM00663 GO:GO:0009507 GO:GO:0009536
GO:GO:0003677 GO:GO:0006351 EMBL:AY522329 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 ProtClustDB:CHL00018
HAMAP:MF_01323 RefSeq:YP_654207.2 ProteinModelPortal:P0C505
GeneID:4126923 Gramene:P0C505 Uniprot:P0C505
Length = 682
Score = 132 (51.5 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 50/176 (28%), Positives = 80/176 (45%)
Query: 387 LIPVLDTTKELIATDI----MFIRSLVVPPNNLRPLSMEQMPPVEHSR-NKLYQSILYSC 441
LI + K I T++ M + L V P LRP+ V S N+LY+ ++
Sbjct: 244 LIRRMQLAKHFIQTNVEPEWMVLCLLPVLPPELRPIVYRSGDKVVTSDINELYKRVIRRN 303
Query: 442 GSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTT 501
+L + ++ +DL+ KL +Q VD L+D+ T
Sbjct: 304 NNL-AYLLKRSELAPADLVM----------CQEKL------VQEAVDTLLDSGSRGQPTR 346
Query: 502 GAHQ--IDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFA 555
H L +++GK G R+ ++GKRV+++GRSVI P L++ G+PLE A
Sbjct: 347 DGHNKVYKSLSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHQCGLPLEIA 402
>UNIPROTKB|P0C506 [details] [associations]
symbol:rpoC1 "DNA-directed RNA polymerase subunit beta'"
species:39947 "Oryza sativa Japonica Group" [GO:0009536 "plastid"
evidence=IC] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 SMART:SM00663 GO:GO:0009507 GO:GO:0009536
GO:GO:0003677 GO:GO:0006351 EMBL:X15901 EMBL:AY522330
GenomeReviews:AY522330_GR Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 eggNOG:COG0086 ProtClustDB:CHL00018 HAMAP:MF_01323
PIR:JQ0214 RefSeq:NP_039374.1 ProteinModelPortal:P0C506
STRING:P0C506 EnsemblPlants:LOC_Osp1g00250.1 GeneID:3131433
KEGG:osa:3131433 Gramene:P0C506 KO:K03046 OMA:VIDNFIA
Uniprot:P0C506
Length = 682
Score = 132 (51.5 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 50/176 (28%), Positives = 80/176 (45%)
Query: 387 LIPVLDTTKELIATDI----MFIRSLVVPPNNLRPLSMEQMPPVEHSR-NKLYQSILYSC 441
LI + K I T++ M + L V P LRP+ V S N+LY+ ++
Sbjct: 244 LIRRMQLAKHFIQTNVEPEWMVLCLLPVLPPELRPIVYRSGDKVVTSDINELYKRVIRRN 303
Query: 442 GSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTT 501
+L + ++ +DL+ KL +Q VD L+D+ T
Sbjct: 304 NNL-AYLLKRSELAPADLVM----------CQEKL------VQEAVDTLLDSGSRGQPTR 346
Query: 502 GAHQ--IDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFA 555
H L +++GK G R+ ++GKRV+++GRSVI P L++ G+PLE A
Sbjct: 347 DGHNKVYKSLSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHQCGLPLEIA 402
>UNIPROTKB|Q6ENI3 [details] [associations]
symbol:rpoC1 "DNA-directed RNA polymerase subunit beta'"
species:4536 "Oryza nivara" [GO:0009536 "plastid" evidence=IC]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
SMART:SM00663 GO:GO:0009507 GO:GO:0009536 GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:AP006728
GO:GO:0003899 RefSeq:YP_052740.1 ProteinModelPortal:Q6ENI3
GeneID:2885900 Gramene:Q6ENI3 ProtClustDB:CHL00018 HAMAP:MF_01323
Uniprot:Q6ENI3
Length = 682
Score = 132 (51.5 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 50/176 (28%), Positives = 80/176 (45%)
Query: 387 LIPVLDTTKELIATDI----MFIRSLVVPPNNLRPLSMEQMPPVEHSR-NKLYQSILYSC 441
LI + K I T++ M + L V P LRP+ V S N+LY+ ++
Sbjct: 244 LIRRMQLAKHFIQTNVEPEWMVLCLLPVLPPELRPIVYRSGDKVVTSDINELYKRVIRRN 303
Query: 442 GSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLLMDAKLNINKTT 501
+L + ++ +DL+ KL +Q VD L+D+ T
Sbjct: 304 NNL-AYLLKRSELAPADLVM----------CQEKL------VQEAVDTLLDSGSRGQPTR 346
Query: 502 GAHQ--IDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVPLEFA 555
H L +++GK G R+ ++GKRV+++GRSVI P L++ G+PLE A
Sbjct: 347 DGHNKVYKSLSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHQCGLPLEIA 402
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.135 0.395 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 621 621 0.00089 120 3 11 22 0.39 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 78
No. of states in DFA: 612 (65 KB)
Total size of DFA: 315 KB (2161 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 56.34u 0.09s 56.43t Elapsed: 00:00:14
Total cpu time: 56.36u 0.09s 56.45t Elapsed: 00:00:14
Start: Thu Aug 15 11:51:13 2013 End: Thu Aug 15 11:51:27 2013