RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16766
(621 letters)
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 304 bits (780), Expect = 5e-90
Identities = 116/489 (23%), Positives = 189/489 (38%), Gaps = 83/489 (16%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHT-IPGGLYDLAMGPISERGDPCTTCGNNYTKCKGH 187
+ +E++ +SV K+ P T + G GGL D +G I +R C TCG C GH
Sbjct: 24 LSPEEIRSMSVAKIEFPETMDESGQRPRVGGLLDPRLGTI-DRQFKCQTCGETMADCPGH 82
Query: 188 IGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKD 247
GHIEL PV + F ++ +L+ C+ C K+ I +++
Sbjct: 83 FGHIELAKPVFHIGFLSKIKKILECVCWNCGKLKIDSSNPK------------------- 123
Query: 248 LEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRH 307
FN+ P + V + + +CD G + + +
Sbjct: 124 -----FNDTQRYRDPKNRLNAVWN-----VCKTKMVCDTGLSAGSDN------FDLSNPS 167
Query: 308 VKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMAS 367
C I ++ S+K KD D E+ +
Sbjct: 168 ANMGHGGCGAAQPTIRKDGLRLWGSWKRGKDESDL----------------PEKRLLSPL 211
Query: 368 EVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPL-SMEQMPPV 426
EV F + + + + L ++ D M I L VPP ++RP S++
Sbjct: 212 EVHTIFTHISSED-------LAHLGLNEQYARPDWMIITVLPVPPPSVRPSISVDGTSRG 264
Query: 427 EHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYN 486
E I+ + +++ + + LQ++
Sbjct: 265 EDDLTHKLSDIIKANANVRRCEQEGAP-------------------AHIVSEYEQLLQFH 305
Query: 487 VDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYL 543
V MD A + ++ L GK G +R N+MGKRV+F+ R+VIT DP L
Sbjct: 306 VATYMDNEIAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNL 365
Query: 544 NIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQ 603
++D +GVP AKTLTYP VTP+N+ L+++V NGP+ +PGA I + G + + +
Sbjct: 366 SLDELGVPRSIAKTLTYPETVTPYNIYQLQELVRNGPDEHPGAKYIIRDTGERIDLRYHK 425
Query: 604 AVQRESLAK 612
L
Sbjct: 426 RAGDIPLRY 434
Score = 113 bits (284), Expect = 4e-26
Identities = 34/82 (41%), Positives = 49/82 (59%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VIT DP L++D +GVP AKTLTYP VTP+N+ L+++V NGP+ +PGA I
Sbjct: 353 FSARTVITGDPNLSLDELGVPRSIAKTLTYPETVTPYNIYQLQELVRNGPDEHPGAKYII 412
Query: 74 NEDGSVVRISSSQAVQRESLAK 95
+ G + + + L
Sbjct: 413 RDTGERIDLRYHKRAGDIPLRY 434
>1twf_A B220, DNA-directed RNA polymerase II largest subunit;
transcription, mRNA, multiprotein complex; HET: UTP;
2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB:
1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A
1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A*
1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 291 bits (747), Expect = 1e-85
Identities = 111/487 (22%), Positives = 183/487 (37%), Gaps = 87/487 (17%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTI-PGGLYDLAMGPISERGDPCTTCGNNYTKCKGH 187
++ +EV+ +SV K+ P T + GGL D +G I +R C TC +C GH
Sbjct: 22 FSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSI-DRNLKCQTCQEGMNECPGH 80
Query: 188 IGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKD 247
GHI+L PV + F ++ + + C C K+ + D
Sbjct: 81 FGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLL------------------------D 116
Query: 248 LEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRH 307
L + + + L +C+ + + +
Sbjct: 117 EHNELMRQALAIKDSKKRFAAI-----WTLCKTKMVCETDVPSEDDPTQ----------- 160
Query: 308 VKRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMAS 367
C I K++ S+K D+ D + E +
Sbjct: 161 -LVSRGGCGNTQPTIRKDGLKLVGSWKKDRATGDAD--------------EPELRVLSTE 205
Query: 368 EVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRP-LSMEQMPPV 426
E+ FK + + L + + M + L VPP +RP +S +
Sbjct: 206 EILNIFKHISVKD-------FTSLGFNEVFSRPEWMILTCLPVPPPPVRPSISFNESQRG 258
Query: 427 EHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYN 486
E IL + SL+++ ++ ++ + LQ++
Sbjct: 259 EDDLTFKLADILKANISLETLEHNGAP-------------------HHAIEEAESLLQFH 299
Query: 487 VDLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYL 543
V MD A + ++ L GK G IR N+MGKRV+F+ R+VI+ DP L
Sbjct: 300 VATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNL 359
Query: 544 NIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQ 603
+D +GVP AKTLTYP VTP+N+ L ++V NGPN +PGA + + G + + S+
Sbjct: 360 ELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSK 419
Query: 604 AVQRESL 610
L
Sbjct: 420 RAGDIQL 426
Score = 108 bits (270), Expect = 2e-24
Identities = 34/80 (42%), Positives = 48/80 (60%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+ DP L +D +GVP AKTLTYP VTP+N+ L ++V NGPN +PGA +
Sbjct: 347 FSARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVI 406
Query: 74 NEDGSVVRISSSQAVQRESL 93
+ G + + S+ L
Sbjct: 407 RDSGDRIDLRYSKRAGDIQL 426
>4ayb_A DNA-directed RNA polymerase; transferase, multi-subunit,
transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_A
2y0s_A 2waq_A 4b1o_A 4b1p_W 2pmz_A 3hkz_A
Length = 880
Score = 262 bits (670), Expect = 3e-77
Identities = 116/490 (23%), Positives = 184/490 (37%), Gaps = 106/490 (21%)
Query: 129 YTDQEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHI 188
+ E++++SV + +P ++ G I G + D +G I E G C TCGN C GH
Sbjct: 14 LSPDEIRKMSVTAIITPDVYDEDGTPIEGSVMDPRLGVI-EPGQKCPTCGNTLGNCPGHF 72
Query: 189 GHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDL 248
GHIEL PVI+ + F+ + L
Sbjct: 73 GHIELVRPVIH----------------------------VGFVKHVYEF----------L 94
Query: 249 EETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHV 308
+ T +++ ++ + ++I + + R +
Sbjct: 95 KATCRRCGRVKISEDEIEKY------------SRIYNAIKKRWPSAARRLTEYVKKTAMK 142
Query: 309 KRKCIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASE 368
+ C C +Q KI + RK + S+
Sbjct: 143 AQVCPHC-------GEKQFKIKLEKPYNFYEE----------------RKEGVAKLTPSD 179
Query: 369 VEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRP-LSMEQMPPVE 427
+ +K+ ++ + +L + M + L VPP +RP + +E E
Sbjct: 180 IRERLEKVPESD-------VEILGYDPTTSRPEWMILTVLPVPPITIRPSIMIESGIRAE 232
Query: 428 HSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNV 487
I+ LK + I +++ W LQY+V
Sbjct: 233 DDLTHKLVDIVRINERLK-------------------ESIDAGAPQLIIEDLWDLLQYHV 273
Query: 488 DLLMD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLN 544
D L +K + L Q L GK G R N+ GKRV+F+ R+VI+PDP ++
Sbjct: 274 ATYFDNEIPGLPPSKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFSSRTVISPDPNIS 333
Query: 545 IDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQA 604
ID +GVP A+TLT P +TPWN+ LR+ VINGP+ +PGAN + DG RI
Sbjct: 334 IDEVGVPEIIARTLTVPERITPWNIEKLRQFVINGPDKWPGANYVIRPDGR--RIDLRYV 391
Query: 605 VQRESLAKRL 614
R+ LA L
Sbjct: 392 KDRKELASTL 401
Score = 106 bits (267), Expect = 3e-24
Identities = 41/101 (40%), Positives = 58/101 (57%), Gaps = 3/101 (2%)
Query: 14 FPHRSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGANMIQ 73
F R+VI+PDP ++ID +GVP A+TLT P +TPWN+ LR+ VINGP+ +PGAN +
Sbjct: 320 FSSRTVISPDPNISIDEVGVPEIIARTLTVPERITPWNIEKLRQFVINGPDKWPGANYVI 379
Query: 74 NEDGSVVRISSSQAVQRESLAKRLITPEDQQHRAIMKEKII 114
DG RI R+ LA + P R + ++
Sbjct: 380 RPDGR--RIDLRYVKDRKELAST-LAPGYVVERHLTDGDVV 417
>3qqc_A DNA-directed RNA polymerase subunit B, DNA-direct polymerase
subunit A', DNA-directed...; transcription, fusion
protein, chimera protein, multiprotein; 3.30A
{Pyrococcus furiosus}
Length = 436
Score = 221 bits (566), Expect = 5e-66
Identities = 87/460 (18%), Positives = 152/460 (33%), Gaps = 107/460 (23%)
Query: 132 QEVKQLSVVKVFSPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHI 191
QE++++S V+V P T++ G+ I GG+ D MG I + G C TCG +C GH GHI
Sbjct: 80 QEIRKMSAVEVTVPDTYDDDGYPIEGGVMDKRMGVI-DPGLRCETCGGRAGECPGHFGHI 138
Query: 192 ELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLEET 251
EL PVI+ F + + +L+ +C C +I + ++ +I+L
Sbjct: 139 ELARPVIHVGFAKTIYRILESTCRECGRIKLTDEEIEEYMKKIELA-------------- 184
Query: 252 LFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLSRHVKRK 311
+ +I K E +
Sbjct: 185 --RNRRSEFN--------------------EIIKEIHKKAKE---------------RMV 207
Query: 312 CIFCATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVEA 371
C C P I +++ I + D+ + +M +EV
Sbjct: 208 CPHCGAPQYPIKFEKPTIYWEIRKDEQG------------------NEYRHRLMPTEVRD 249
Query: 372 DFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRP-LSMEQMPPVEHSR 430
+K+ ++ L L L P + ++ + L VPP RP +++E E
Sbjct: 250 WLEKI-PDKDLPLLGLDPEKSRPEWMV------LTVLPVPPVTARPSITLETGIRAEDDL 302
Query: 431 NKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGDTLNNKLQNSWHELQYNVDLL 490
I+ LK + I +++ W LQY+V
Sbjct: 303 THKLVDIIRINNRLK-------------------QNIEAGAPQLIIEDLWDLLQYHVTTY 343
Query: 491 MD---AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDS 547
++ + K + L Q L GK G R N+ G + AG +
Sbjct: 344 INNEAPGVPPAKHKSGRPLKTLAQRLKGKEGRFRGNLSGGAGSGAGSGSVLARA------ 397
Query: 548 IGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGAN 587
+ N+ + + V+ G + +
Sbjct: 398 -AFEITVQHLFEAAEKGEVDNLNGVIENVLIGQKHHHHHH 436
Score = 75.1 bits (185), Expect = 1e-14
Identities = 3/54 (5%), Positives = 11/54 (20%), Gaps = 7/54 (12%)
Query: 17 RSVITPDPYLNIDSIGVPLEFAKTLTYPVPVTPWNVTLLRKMVINGPNVYPGAN 70
+ + N+ + + V+ G + +
Sbjct: 390 SGSVLARA-------AFEITVQHLFEAAEKGEVDNLNGVIENVLIGQKHHHHHH 436
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 64.5 bits (156), Expect = 7e-11
Identities = 79/631 (12%), Positives = 172/631 (27%), Gaps = 200/631 (31%)
Query: 102 DQQHRAIMKEKIITRQEVVPEILKLKYYTDQ--------EVKQLSVVKVF---------- 143
D + M + I++++E+ I+ K KQ +V+ F
Sbjct: 34 DCKDVQDMPKSILSKEEI-DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK 92
Query: 144 ---SPITFNSLGHTIPGGLYDLAMGPISERGDPCTTCGNNYTKCKGHIGHIELPVPVINT 200
SPI ++ +Y I +R D +N K ++ ++ + +
Sbjct: 93 FLMSPIKTEQRQPSMMTRMY------IEQR-DR--LYNDNQVFAKYNVSRLQPYLKLRQA 143
Query: 201 LF-FRDVQLLL--------K--LSCFLCHKINIPATSQLLFINQIKLLDAGYVTQAKDLE 249
L R + +L K ++ +C + Q +I L+ + +
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV----QCKMDFKIFWLNLKNCNSPETVL 199
Query: 250 ETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQ------- 302
E L + L L Q+ + I+ + ELR ++
Sbjct: 200 EML---QKL------LYQIDPNWTSRSDHSSNIKLRIHSIQ--AELRRLLKSKPYENCLL 248
Query: 303 VLSRHVKRKCIFCATPINAISYQQRKIIKSFKI---------DKDNLDQSLDKSLNKSSN 353
VL +V+ K +F + K D S +++
Sbjct: 249 VL-LNVQNA----------------KAWNAFNLSCKILLTTRFKQVTDFL---SAATTTH 288
Query: 354 QIIRKREQGYVMASEVEADFKKLWTNEHLFLKCL-IPVLDTTKELIATDI------MFIR 406
+ + E + L LK L D +E +
Sbjct: 289 ISLDHHSMTL---TPDEV--------KSLLLKYLDCRPQDLPRE--VLTTNPRRLSIIAE 335
Query: 407 SLVVPPN--------------NLRPLSMEQMPPVEHSRNKLYQ--SILYSCGSLKSV-IM 449
S+ + S+ + P E+ K++ S+ S I
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR--KMFDRLSVF-----PPSAHIP 388
Query: 450 A---------MKNKEQSDLLSEALKGIRGDTLNNK--LQNSWHELQYNV-DLLMDAKLNI 497
+ + ++++ L+ ++ E ++ + ++ K+ +
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNK---------LHKYSLVEKQPKESTISIPSIYLELKVKL 439
Query: 498 NKTTGAHQI--------------DGLKQMLDG-----------KTGMIRQNMMGKRV--- 529
H+ D + LD + + + V
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD 499
Query: 530 -NFAGRSVITPDPYLNIDSIGVPL--EFAKTLTYPVPVTPWN---VTLLRKMVIN-GPNV 582
F + + N + + Y P V + + N+
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL 559
Query: 583 Y--PGANMIQ----NEDGSVVRISSSQAVQR 607
++++ ED ++ + Q VQR
Sbjct: 560 ICSKYTDLLRIALMAEDEAIFEEAHKQ-VQR 589
Score = 53.3 bits (127), Expect = 2e-07
Identities = 91/460 (19%), Positives = 139/460 (30%), Gaps = 122/460 (26%)
Query: 8 FNHAHVFPHRSVITPDPYLNI--------DSIGVPLE----FAKT-LTYPV----PVTP- 49
+N VF +V PYL + + V ++ KT + V V
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179
Query: 50 ------W----NVTLLRKMVINGPNVYP--GANMIQNEDGSV---VRISSSQAVQRESLA 94
W N ++ + N D S +RI S QA R L
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 95 KR-----LITPEDQQHRAIMKE-----KII--TRQEVVPEILKLKYY------------T 130
+ L+ + Q+ KI+ TR + V + L T
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 131 DQEVKQLSVVKVFSPITFNSLGH----TIPGGLYDLAMGPISE--RGDPCTTCGNNY--T 182
EVK L ++K L T P + I+E R T +N+
Sbjct: 300 PDEVKSL-LLKYLD-CRPQDLPREVLTTNP-----RRLSIIAESIRDGLATW--DNWKHV 350
Query: 183 KCKGHIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFI--NQIKLLDAG 240
C IE + V+ +R ++ +LS F +IP + LL + + D
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYR--KMFDRLSVFPPS-AHIP--TILLSLIWFDVIKSDVM 405
Query: 241 YVTQ---AKDLEETLFNEENLRLHPAQLV------QLVDSHVQSILAH---------GTK 282
V L E E + + L H +SI+ H
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH-RSIVDHYNIPKTFDSDDL 464
Query: 283 ICDIND-Y---------KGGE--ELRSAFVAQVLS-RHVKRKCIFCATPINAISY----- 324
I D Y K E E + F L R +++K +T NA
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524
Query: 325 QQRKIIKSFKIDKDNLDQSLDKS----LNKSSNQIIRKRE 360
QQ K K + D D + L + L K +I +
Sbjct: 525 QQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY 564
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2
PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D*
2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D*
3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Length = 1524
Score = 62.5 bits (152), Expect = 3e-10
Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 483 LQYNVDLLMDAKLNINKTTGA---HQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQ VD L+D T + L +L GK G RQN++GKRV+++GRSVI
Sbjct: 574 LQEAVDALLDNGRRGAPVTNPGSDRPLRSLTDILSGKQGRFRQNLLGKRVDYSGRSVIVV 633
Query: 540 DPYLNIDSIGVPLEFA 555
P L + G+P A
Sbjct: 634 GPQLKLHQCGLPKRMA 649
Score = 30.1 bits (68), Expect = 2.7
Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 7/51 (13%)
Query: 170 RGDPCTTCGNNYTKCK---GHIGHIELPVPVINTLFFRDVQ----LLLKLS 213
G C CG TK +GHIEL P + F +DV LL LS
Sbjct: 69 EGKVCERCGVEVTKSIVRRYRMGHIELATPAAHIWFVKDVPSKIGTLLDLS 119
>1hqm_D DNA-directed RNA polymerase; transferase, transcription, 3D-
structure; 3.30A {Thermus aquaticus} SCOP: i.8.1.1 PDB:
1i6v_D* 2gho_D
Length = 1265
Score = 60.8 bits (148), Expect = 9e-10
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 483 LQYNVDLLMDAKLNINKTTGAHQIDGLK---QMLDGKTGMIRQNMMGKRVNFAGRSVITP 539
LQ VD ++D + T L+ +L GK G RQN++GKRV+++GRSVI
Sbjct: 314 LQEAVDAVIDNGRRGSPVTNPGSERPLRSLTDILSGKQGRFRQNLLGKRVDYSGRSVIVV 373
Query: 540 DPYLNIDSIGVPLEFA 555
P L + G+P A
Sbjct: 374 GPQLKLHQCGLPKRMA 389
Score = 30.7 bits (70), Expect = 1.9
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Query: 170 RGDPCTTCGNNYTKCK---GHIGHIELPVPVINTLFFRDVQ----LLLKLS 213
G C CG T+ +GHIEL P + F +DV LL L
Sbjct: 69 EGKVCERCGVEVTRSIVRRYRMGHIELATPAAHIWFVKDVPSKIGTLLDLF 119
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.8 bits (147), Expect = 1e-09
Identities = 112/654 (17%), Positives = 195/654 (29%), Gaps = 244/654 (37%)
Query: 28 IDSIGV-PLEFAKTLTY-------PVPVTPW-NVTLLRK---MVINGPNVYPGANMIQNE 75
+D+ PL TL++ VP + + L++ ++ P A +E
Sbjct: 1 MDAYSTRPL----TLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAA---DDE 53
Query: 76 DGSVV------------RISSSQAVQRESLAKRLITPEDQQHRAIMKEKII--------- 114
+ + S+ Q + + + + ++ I
Sbjct: 54 PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCL---TEFENCYLEGNDIHALAAKLLQ 110
Query: 115 ---TRQEVVPEILKLKYYTDQEVKQLSVVKVFSPITFNSL--GHTIPGGLYDLAMGPISE 169
T E++K Y T + + + K + F ++ G+ L G
Sbjct: 111 ENDTTLVKTKELIK-NYITARIMAKRPFDKKSNSALFRAVGEGNA---QLV-AIFG---- 161
Query: 170 RGDPCTTCGNN--YTKCKGHIGHIEL------PVPVINTLFFRDVQLLLKLSC------- 214
G GN Y + EL ++ L + L +L
Sbjct: 162 -GQ-----GNTDDYFE--------ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEK 207
Query: 215 FLCHKINI----------PATSQLLFI----NQIKLLD-AGYVTQAKDLEETLFNEENLR 259
+NI P LL I I ++ A YV AK L
Sbjct: 208 VFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAK----------LLG 257
Query: 260 LHPAQLVQLVDSHVQSILAHGTKICDINDYKGGEELRSAFVAQVLS-----RHVKR--KC 312
P +L S+++ H + + + +A+ S V++
Sbjct: 258 FTPGELR----SYLKGATGHSQGL-----------VTAVAIAETDSWESFFVSVRKAITV 302
Query: 313 IF-----C--ATPINAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQI-IR--KREQG 362
+F C A P ++ L+ SL+ + S + I +EQ
Sbjct: 303 LFFIGVRCYEAYPNTSLPPSI-------------LEDSLENNEGVPSPMLSISNLTQEQ- 348
Query: 363 YVMASEVEADFKKLWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVV--PPNNLRPLSM 420
V+ K TN HL + + L+ ++LVV PP +L L++
Sbjct: 349 ------VQDYVNK--TNSHLPAGKQVEI-----SLVNGA----KNLVVSGPPQSLYGLNL 391
Query: 421 E----QMPP------VEHSRNKLYQSILYSCGSLKSVIMAMKNKEQSDLLSEALKGIRGD 470
+ P + S KL S + L + + S LL A I D
Sbjct: 392 TLRKAKAPSGLDQSRIPFSERKLKFSNRF----L--PVAS---PFHSHLLVPASDLINKD 442
Query: 471 TLNNKLQNSWHELQ---YN------------------VDLLMDAKLN---INKTTGAHQI 506
+ N + + ++Q Y+ VD ++ + + H +
Sbjct: 443 LVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHIL 502
Query: 507 D-------GL----KQMLDGKTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIG 549
D GL + DG TG+ RV AG I PD D G
Sbjct: 503 DFGPGGASGLGVLTHRNKDG-TGV--------RVIVAGTLDINPD-----DDYG 542
Score = 46.6 bits (110), Expect = 2e-05
Identities = 41/225 (18%), Positives = 66/225 (29%), Gaps = 84/225 (37%)
Query: 10 HAH-VFPHRSVI-------------TPDPYLNIDSIGVPLEF-----AKTLTYPVPVTPW 50
+ +P+ S+ P P L+I + E KT ++ +P
Sbjct: 309 RCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI--SNLTQEQVQDYVNKTNSH-LPAGKQ 365
Query: 51 -NVTLL---RKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLITPEDQQHR 106
++L+ + +V++GP P S + +L K Q R
Sbjct: 366 VEISLVNGAKNLVVSGP---P---------------QSLYGLNL-TLRKAKAPSGLDQSR 406
Query: 107 AIMKEKIITRQEVVPEILKLKYYTDQEVKQLSVVKVFSPIT--FNS--LGHTIPGGLYDL 162
E+ KLK+ F P+ F+S L DL
Sbjct: 407 IPFSER------------KLKFSN-----------RFLPVASPFHSHLLVPASDLINKDL 443
Query: 163 AMGPISERGD----P--CTTCGNNYTKCKGHIGH------IELPV 195
+S P T G++ G I I LPV
Sbjct: 444 VKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPV 488
Score = 45.4 bits (107), Expect = 5e-05
Identities = 92/537 (17%), Positives = 175/537 (32%), Gaps = 177/537 (32%)
Query: 187 HIGHIELPVPVINTLFFRDVQLLLKLSCFLCHKINIPA---------TSQ-------LLF 230
H G +E + V FF QL F + P T+ L +
Sbjct: 13 H-GSLEHVLLVPTASFFIASQL---QEQFN-KILPEPTEGFAADDEPTTPAELVGKFLGY 67
Query: 231 INQIKLLDAGYVTQAKDLEETLFNE-ENLRLHPAQLVQLVDSHVQSILAHGTKICDINDY 289
++ L++ V Q + E EN L D H ++ A + D
Sbjct: 68 VSS--LVEPSKVGQFDQVLNLCLTEFENCYLEGN------DIH--ALAAKLLQENDTTLV 117
Query: 290 KGGEELRSAFVAQVLSRHVKRKC----IFCA-----TPINAI--------SYQQ--RKII 330
K E +++ A+++++ K +F A + AI Y + R +
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLY 177
Query: 331 KSFKIDKDNLDQSLDKSLNKSSNQIIRKR---EQGYVMASEVEADFKKLWTNE------H 381
+++ + +L + ++L++ + QG + + W
Sbjct: 178 QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL--------NILE-WLENPSNTPDK 228
Query: 382 LFLKCLIPVLDTTKELI-----ATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLYQS 436
+L IP+ + LI A ++ + L P LR L +
Sbjct: 229 DYL-LSIPI---SCPLIGVIQLAHYVVTAKLLGFTPGELRS--------------YLKGA 270
Query: 437 ILYSCGSLKSVIMAMKNKEQS--DLLSEALK-----GIRG---------------DTLNN 474
+S G + +V +A + +S + +A+ G+R D+L N
Sbjct: 271 TGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLEN 330
Query: 475 -----------------KLQNSWHELQYNVDLLMDAKLNINKTTGAHQ--IDGLKQMLDG 515
++Q+ + + N L ++ I+ GA + G Q L G
Sbjct: 331 NEGVPSPMLSISNLTQEQVQD--YVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYG 388
Query: 516 KTGMIR---------QNMMGKRVNFAGRSVITPDPYLNIDSIGVP-----LEFAKTLT-- 559
+R Q+ R+ F+ R + + +L + P L A L
Sbjct: 389 LNLTLRKAKAPSGLDQS----RIPFSERKLKFSNRFLP---VASPFHSHLLVPASDLINK 441
Query: 560 -YPVPVTPWNVTLLRKMVINGPNVYPGANMIQNEDGSVVRISSSQAVQRESLAKRLI 615
+N ++ I P VY DGS +R+ S S+++R++
Sbjct: 442 DLVKNNVSFNAKDIQ---I--P-VY------DTFDGSDLRVLSG------SISERIV 480
Score = 34.3 bits (78), Expect = 0.14
Identities = 58/377 (15%), Positives = 96/377 (25%), Gaps = 150/377 (39%)
Query: 4 PSVNFNHAHVFPHRSVI-----TPD-PYLNIDSIGVPL----------EFAKTLTYPVPV 47
+ TPD YL I PL AK L +
Sbjct: 203 LDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGF---- 258
Query: 48 TPWNV-TLLRKMVINGPNVYPGA---------NMIQNEDGSVVRIS------SSQAVQRE 91
TP + + L+ + + + + + + +A
Sbjct: 259 TPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVR-KAITVLFFIGVRCYEAYPNT 317
Query: 92 SLAKRLITPEDQQHRAIMKEKI---------ITRQEVVPEILKLKYYTDQEVKQLSVVKV 142
SL ++ + ++ E + +T+++V + K + KQ+ + V
Sbjct: 318 SLPPSILE-DSLENN----EGVPSPMLSISNLTQEQVQDYVNKTNSHLPAG-KQVEISLV 371
Query: 143 FSPITFNSLGHTIPGGLYDLAMG---------------PISERGDPCTTCGNNYTKCKGH 187
G P LY L + P SER K
Sbjct: 372 NGAKNLVVSGP--PQSLYGLNLTLRKAKAPSGLDQSRIPFSER--------------KLK 415
Query: 188 IGHIELPV--PVINTLFFRDVQLLLKLSCFLCHKINIPATSQLLFINQIKLLDAGYVTQA 245
+ LPV P F LL PA+ +
Sbjct: 416 FSNRFLPVASP-----FHSH---LLV-----------PASDLIN---------------- 440
Query: 246 KDLEETLFNEENLRLHPAQLVQLVDSHVQSILAHGTKI--CDINDYKGGEELRSAFVAQV 303
KDL + N+ + + +I D D G +LR +
Sbjct: 441 KDLVK-----NNVSFNAKDI----------------QIPVYDTFD---GSDLRV-LSGSI 475
Query: 304 LSRHVKRKCIFCATPIN 320
R V CI P+
Sbjct: 476 SERIV--DCIIRL-PVK 489
Score = 33.5 bits (76), Expect = 0.25
Identities = 36/238 (15%), Positives = 77/238 (32%), Gaps = 79/238 (33%)
Query: 223 PATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVD-SHVQSILAHGT 281
++ F ++ LL A TQ PA L L++ + + + + G
Sbjct: 1712 EHSTSYTFRSEKGLLSATQFTQ-----------------PA-LT-LMEKAAFEDLKSKG- 1751
Query: 282 KICDINDYK-G---GEELRSAFV--AQVLS-----RHV-KR-KCIFCATPINAISYQQRK 328
+ + G GE +A A V+S V R + A P + +
Sbjct: 1752 -LIPADATFAGHSLGE--YAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYG 1808
Query: 329 IIK------SFKIDKDNLDQSLDKSLNKSSNQIIR------KREQGYVMASEVEADFKKL 376
+I + ++ L +++ + K + ++ + +Q YV A ++ A
Sbjct: 1809 MIAINPGRVAASFSQEALQYVVER-VGKRTGWLVEIVNYNVENQQ-YVAAGDLRA----- 1861
Query: 377 WTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPVEHSRNKLY 434
L + VL+ K + + +++ +E L+
Sbjct: 1862 -------LDTVTNVLNFIKL----------------QKIDIIELQKSLSLEEVEGHLF 1896
Score = 29.2 bits (65), Expect = 4.7
Identities = 52/294 (17%), Positives = 87/294 (29%), Gaps = 114/294 (38%)
Query: 319 INAISYQQRKIIKSFKIDKDNLDQSLDKSLNKSSNQIIRKREQGYVMASEVEADFKK--- 375
++A S + + +L+ L + +AS+++ F K
Sbjct: 1 MDAYS------TRPLTLSHGSLEHVLLVP------------TASFFIASQLQEQFNKILP 42
Query: 376 -----LWTNEHLFLKCLIPVLDTTKELIATDIMFIRSLVVPPNNLRPLSMEQMPPV---- 426
++ P T EL+ + ++ SLV P + Q V
Sbjct: 43 EPTEGFAADDE-------PT--TPAELVGKFLGYVSSLV------EPSKVGQFDQVLNLC 87
Query: 427 ----E---------HSR-NKLYQSILYSCGSLKSVIMA-----------MKNKEQSDLLS 461
E H+ KL Q + K +I K S L
Sbjct: 88 LTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFR 147
Query: 462 EALKGIRGDTLNNKL------Q-NS---WHELQ--YNV--DLLMDAKLNINKTTGAHQID 507
+G N +L Q N+ + EL+ Y L+ D I
Sbjct: 148 AVGEG------NAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDL------------IK 189
Query: 508 GLKQMLDGKTGMIRQNMMGKRVNFAGRSVI--------TPD-PYLNIDSIGVPL 552
+ L +IR + ++V G +++ TPD YL I PL
Sbjct: 190 FSAETLS---ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL 240
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase,
nucleotidyltransferase, transcription, transferase;
11.20A {Escherichia coli} PDB: 3iyd_D*
Length = 1407
Score = 58.8 bits (143), Expect = 4e-09
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 483 LQYNVDLLMD--AKLNINKTTGAHQIDGLKQMLDGKTGMIRQNMMGKRVNFAGRSVITPD 540
LQ VD L+D + + + L M+ GK G RQN++GKRV+++GRSVIT
Sbjct: 299 LQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVG 358
Query: 541 PYLNIDSIGVPLEFA 555
PYL + G+P + A
Sbjct: 359 PYLRLHQCGLPKKMA 373
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.20
Identities = 8/34 (23%), Positives = 17/34 (50%), Gaps = 12/34 (35%)
Query: 132 QEVKQL-SVVKVFSPITFNSLGHTIPGGLYDLAM 164
Q +K+L + +K+++ +S P LA+
Sbjct: 20 QALKKLQASLKLYAD---DS----APA----LAI 42
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 29.8 bits (67), Expect = 3.4
Identities = 11/94 (11%), Positives = 32/94 (34%), Gaps = 7/94 (7%)
Query: 218 HKINIPATSQLLFINQIKLLDAGYVTQAKDLEETLFNEENLRLHPAQLVQLVDSHVQSIL 277
++PA + + + + V A + + L AQ+ V++ ++++
Sbjct: 1215 IGRSVPAPGKGILTTAREHHSS--VKYASPNLNMKYRKRQLVTREAQIKDWVENELEALK 1272
Query: 278 AHG--TKICDINDYKGGEELRSAFVAQVLSRHVK 309
D N++ R+ + ++
Sbjct: 1273 LEAEEIPSEDQNEFL---LERTREIHNEAESQLR 1303
>3q2u_A Glioma pathogenesis-related protein 1; crisp, membrane protein;
1.85A {Homo sapiens} PDB: 3q2r_A
Length = 205
Score = 28.3 bits (63), Expect = 6.5
Identities = 10/31 (32%), Positives = 12/31 (38%), Gaps = 3/31 (9%)
Query: 156 PGGLYDLAMGPISERGDPCTTCGNNYTKCKG 186
PGG Y +RG C+ C NN
Sbjct: 162 PGGNY---PTWPYKRGATCSACPNNDKCLDN 189
>3i1m_R 30S ribosomal protein S18; ribosome structure, protein-RNA complex,
ribonucleoprotein, ribosomal protein, RNA-binding,
rRNA-binding, antibiotic resistance; 3.19A {Escherichia
coli k-12} PDB: 1vs7_R* 1vs5_R 3i1o_R 3i1q_R 3i1s_R
3i1z_R 3i21_R 3izv_V* 3izw_V* 3kc4_R 3or9_R 3ora_R
3sfs_R* 3uoq_R* 2qal_R* 1p6g_R 1p87_R 2aw7_R 2avy_R
2i2u_R ...
Length = 75
Score = 26.4 bits (59), Expect = 6.5
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 309 KRKCIFCATPINAISYQQRKIIKSF 333
++ C F A + I Y+ +K++
Sbjct: 8 RKFCRFTAEGVQEIDYKDIATLKNY 32
>2ha2_A ACHE, acetylcholinesterase; hydrolase fold, serine esterase, homod
glycosylated protein, hydrolase; HET: NAG FUC SCK SCU
P6G; 2.05A {Mus musculus} SCOP: c.69.1.1 PDB: 1j07_A*
1mah_A* 1j06_A* 1n5r_A* 2gyv_A* 2gyw_A* 2h9y_A* 2ha0_A*
2gyu_A* 2ha3_A* 2wls_A* 4a23_A* 2c0q_A* 2jey_A* 2jgm_A*
2whr_A* 2c0p_A* 1ku6_A* 1q84_A* 1q83_A* ...
Length = 543
Score = 28.5 bits (64), Expect = 7.9
Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 24/61 (39%)
Query: 516 KTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVP--------LEFAKTLTYPVPVTPW 567
+ G +R G R+ G V +L G+P F P P PW
Sbjct: 13 RGGQLR----GIRLKAPGGPVSA---FL-----GIPFAEPPVGSRRFMP----PEPKRPW 56
Query: 568 N 568
+
Sbjct: 57 S 57
>2vqe_R 30S ribosomal protein S18; tRNA-binding, rRNA-binding,
metal-binding, zinc-finger, translation; HET: TM2 PAR;
2.5A {Thermus thermophilus} SCOP: a.4.8.1 PDB: 1fka_R
1fjg_R 1gix_U* 1hnw_R* 1hnx_R* 1hnz_R* 1hr0_R 1ibk_R*
1ibl_R* 1ibm_R 1j5e_R 1jgo_U* 1jgp_U* 1jgq_U* 1ml5_U*
1n32_R* 1n33_R* 1n34_R 1n36_R 1xmo_R* ...
Length = 88
Score = 26.5 bits (59), Expect = 8.4
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 309 KRKCIFCATPINAISYQQRKIIKSF 333
K K + Y+ +++K F
Sbjct: 19 KAKVKATLGEFDLRDYRNVEVLKRF 43
>1ea5_A ACHE, acetylcholinesterase; hydrolase, serine hydrolase,
neurotransmitter cleavage, catalytic triad, alpha/beta
hydrolase; HET: NAG; 1.80A {Torpedo californica} SCOP:
c.69.1.1 PDB: 1ax9_A* 1amn_A* 1cfj_A* 1fss_A* 1gpk_A*
1gpn_A* 1oce_A* 1qid_A 1qie_A 1qif_A 1qig_A 1qih_A
1qii_A 1qij_A 1qik_A 1qim_A 1qti_A* 1vot_A* 1vxo_A*
1vxr_A* ...
Length = 537
Score = 28.1 bits (63), Expect = 9.5
Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 24/61 (39%)
Query: 516 KTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVP--------LEFAKTLTYPVPVTPW 567
K+G + G RV + +L G+P + F + P P PW
Sbjct: 11 KSGKVM----GTRVPVLSSHISA---FL-----GIPFAEPPVGNMRFRR----PEPKKPW 54
Query: 568 N 568
+
Sbjct: 55 S 55
>1p0i_A Cholinesterase; serine hydrolase, butyrate, hydrolase; HET: NAG FUC
MES; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A*
1p0p_A* 1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A*
3djy_A* 3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2y1k_A* 2j4c_A*
2xmb_A* 2xmc_A* 2xmd_A* 2xmg_A* 2wig_A* ...
Length = 529
Score = 28.1 bits (63), Expect = 9.8
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 24/61 (39%)
Query: 516 KTGMIRQNMMGKRVNFAGRSVITPDPYLNIDSIGVP--------LEFAKTLTYPVPVTPW 567
K G +R G ++ G +V +L G+P L F K P +T W
Sbjct: 9 KNGKVR----GMQLTVFGGTVTA---FL-----GIPYAQPPLGRLRFKK----PQSLTKW 52
Query: 568 N 568
+
Sbjct: 53 S 53
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.395
Gapped
Lambda K H
0.267 0.0623 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,258,273
Number of extensions: 555700
Number of successful extensions: 1160
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1135
Number of HSP's successfully gapped: 34
Length of query: 621
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 522
Effective length of database: 3,937,614
Effective search space: 2055434508
Effective search space used: 2055434508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.1 bits)