BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16767
(1020 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|345483754|ref|XP_001602617.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Nasonia
vitripennis]
Length = 1706
Score = 910 bits (2352), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/1114 (44%), Positives = 697/1114 (62%), Gaps = 116/1114 (10%)
Query: 1 MDGWTQNASHF-----LKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTF 55
DG NA HF +AE ++ NVS+QYLVPKDG+PLSGLIQDH+I+G +LSLR F
Sbjct: 581 FDGDEMNA-HFPQNELARAEGYYIANVSNQYLVPKDGTPLSGLIQDHMIAGVRLSLRGKF 639
Query: 56 LTRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGE 115
+ +YM LV+ AL ++ + LPP I KP+P+W+GKQV+ST+IIN+ P+ K +I
Sbjct: 640 FEKEDYMQLVFSALSVIQGNLILLPPAIIKPIPMWSGKQVISTIIINIIPRGKALI---N 696
Query: 116 LLSGILDKKQFGSTQYGLVH--------------AVWDTHVTIRHGELLSGILDKKQFGS 161
L +G + G+ ++ + + ++ V IR+GELL GILDKK +G+
Sbjct: 697 LTAG----AKIGAHEWQVTKPRPWKCGEEFKNPKTMSESEVIIRNGELLCGILDKKHYGA 752
Query: 162 TQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIIN 221
T +GL+H V++ +G + LLS K+F YLQR+GFTLG+ DILV+Q+ D+KRT+II+
Sbjct: 753 TPFGLIHCVFELYGGTTSSRLLSAFGKVFQSYLQRIGFTLGIEDILVKQKADKKRTEIIS 812
Query: 222 KARRLGTEAACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQ 281
+ R++G + L +P DT EI++++++E+Y S P+FRAQ+DR+YK+ LD TNNIN+
Sbjct: 813 ECRKIGESIHKSILEVPEDTPMEIVTAKMEESYWSNPKFRAQVDRKYKTALDVYTNNINK 872
Query: 282 VCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSF 341
CLP GLI+ FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEGKRP +M+SG++LPSF
Sbjct: 873 TCLPAGLIKTFPENNLQLMVQSGAKGSTVNTMQISCLLGQIELEGKRPPLMISGKSLPSF 932
Query: 342 LPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEG 401
Y+ +PRAGGF+DGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCL+KH+EG
Sbjct: 933 PAYDPAPRAGGFIDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHMEG 992
Query: 402 LTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLL- 460
L ++YD TVRDSD SL+Q+ YGEDGLD+ K ++L D+QF FL +N I +++ L
Sbjct: 993 LMINYDATVRDSDGSLVQIYYGEDGLDILKSRFLNDEQFEFLVENRNAIADEQLLKQLKA 1052
Query: 461 ------------------KKHPLSLALLLLLTF--------KSSGKPNFIFSPH--RTKF 492
K+H SL F K N I P R+K
Sbjct: 1053 NADPQKISKLVKKIHKWEKRHGSSLVKNRTSAFTKFSAEHAKPDSSKNKIIIPACGRSKA 1112
Query: 493 TMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGR-- 550
++ L+++W + DD+ + YR + CP PL + ++ D FG +SE L + Y K +
Sbjct: 1113 SLSLMKKWIRTDDETKNMYRSQCDRCPDPLTAKYRQDLDFGVLSEKLESLIDNYLKKKSG 1172
Query: 551 --TDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
T + ++ +++ K + +L PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNV
Sbjct: 1173 SFTTSIGKEELREVLCAKVMNTLCPPGEPVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNV 1232
Query: 609 TLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIK 668
TLGIPRLREILMMA+K IKTPSMEIPF D+P L K+AN++ +T+ +A+VL+ +K++
Sbjct: 1233 TLGIPRLREILMMASKNIKTPSMEIPFKKDLPNLTKQANKVRLKLTKCYIANVLKHIKVE 1292
Query: 669 EWLEISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKEL--EVAIAKRAAQ 726
L P+ M Y + ++P Y+++ V P II ER F +E+ ++ A ++
Sbjct: 1293 RKLVHQPQRQMQYTITVEYLPHRYYKNEFGVHPKDIITKTERLFFREIFRDIKKAAKSTG 1352
Query: 727 GLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRVDV-----SSDEER--DEEDAVQSH 779
+ N E+ + + ED D++ GAE + GR D+ SSDEE D+ DA +
Sbjct: 1353 SIVYFNEEKRQTKNEDSKLDEDDAGAEDEPKSRGRFDLGEMHESSDEEEVADDADATTAR 1412
Query: 780 KKVNQEEDNDFEE---------PEDEERMSEREEDDNTSNIGERFKIEFRDSTNVFVK-- 828
+E+ ++++ D + +E ++ +N + FR S + +
Sbjct: 1413 SVSRHQENREYDDPEEEEEEPEEADNDNENENDKVNNAPAANKDDDDNFRVSMHGINRIQ 1472
Query: 829 ------DVVNQHNIVHKYSYDKKNHMWCKLLF-LPSNL---------------------- 859
D+VN + Y YD + + WCKL F LP L
Sbjct: 1473 YEQRKLDIVNMYVHALDYDYDAEKNQWCKLKFWLPIKLTNIDMPTILRNVANKVVLWETP 1532
Query: 860 -------FEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVI 912
F+ + +LKTDGINV + +Y +LDL++LY NDI+ ++ TYGIEAANRVI
Sbjct: 1533 AIKRAFTFQNPSGETILKTDGINVVEMFKYNEILDLHRLYSNDIYGISQTYGIEAANRVI 1592
Query: 913 IREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKI 972
++EVK+VF +YGI VD RHLSL+ADYMT G + ++R G+ + S +Q+M+FE L +
Sbjct: 1593 VKEVKDVFKMYGITVDTRHLSLIADYMTFEGRFQPLSRKGMEDSASPLQQMSFESSLNFL 1652
Query: 973 RQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+ A++QG+ D L +PS+R+MLGQ C GTG F L
Sbjct: 1653 KNATLQGKNDDLTSPSSRLMLGQPCNSGTGAFSL 1686
>gi|91084933|ref|XP_970918.1| PREDICTED: similar to DNA-directed RNA polymerase I largest subunit
[Tribolium castaneum]
gi|270008555|gb|EFA05003.1| hypothetical protein TcasGA2_TC015082 [Tribolium castaneum]
Length = 1619
Score = 909 bits (2349), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/1070 (47%), Positives = 673/1070 (62%), Gaps = 87/1070 (8%)
Query: 2 DGWTQNASHF-----LKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA HF ++EA L+NV +QYLVPKDG+PLSGLIQDH+I+G KLSLR F
Sbjct: 574 DGDEMNA-HFPQNELARSEAYNLVNVCNQYLVPKDGTPLSGLIQDHMIAGVKLSLRGRFF 632
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPK--DKVIIRHG 114
+Y + V+QAL +I LPP I KP LW+GKQ+LSTV IN+ P+ +++ +
Sbjct: 633 NEVDYKHFVFQALANKTGKIILLPPAIIKPCQLWSGKQILSTVFINIIPEGHERINLTAS 692
Query: 115 ELLSGIL------DKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVH 168
+S K + G +++ + + + V IR GELL G+LDK +G+T YGLVH
Sbjct: 693 AKISAKAWQTAPPRKWKGGGSRFVNPNTMSEAEVVIRGGELLVGVLDKTHYGATPYGLVH 752
Query: 169 AVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGT 228
+++ +G +A LLS LAKLFT +LQ+ GFTLGV DIL ++ D++R +II AR++G
Sbjct: 753 CMYELYGGVYATGLLSALAKLFTRFLQKEGFTLGVHDILTVEKADQRRRQIIEGARKIGL 812
Query: 229 EAACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGL 288
+ AL +P D+ E I +++E P++RA +DRQYK+ LD TN+IN+ CLP GL
Sbjct: 813 DVITTALDMPRDSPIEEIVDKIRENSVKNPKWRATVDRQYKTALDSFTNDINKTCLPAGL 872
Query: 289 IEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSP 348
+ FP NNLQ MV+SGAKG+TVNTMQISCLLGQIELEGKRP +M+SG++LPSF +E +P
Sbjct: 873 VLKFPENNLQLMVQSGAKGTTVNTMQISCLLGQIELEGKRPPVMISGKSLPSFPIFEFAP 932
Query: 349 RAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDM 408
RAGGF+DGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEGLTV YD+
Sbjct: 933 RAGGFIDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLTVGYDL 992
Query: 409 TVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLA 468
TVRDSD +IQ LYGEDG+D++K Q+L KQ FL DN K + K + L +H S+
Sbjct: 993 TVRDSDKCVIQFLYGEDGMDISKLQFLNSKQLVFLADNSKGMIDKKALKMLKDEHQKSVK 1052
Query: 469 L---LLLLTFKSSGKP---------NFIFSPHRTKF------TMDLLEQWYQLDDKARKK 510
L + G P + S R K T ++ + W + D +
Sbjct: 1053 AHKQQLADWCEKFGHPLQRERKSPFSLFSSVVRAKTKGTDFGTKEMTKLWKKADKDIKDS 1112
Query: 511 YRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLS 570
+R++ CP P+ S +QPD HFGS++E L + + Y T+ +F +M+ K + S
Sbjct: 1113 FRQQCIPCPDPVNSIYQPDHHFGSLNEKLEELMNTYQS--TNKKQTKQFQNMLKLKAMRS 1170
Query: 571 LANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPS 630
L PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVTLGIPRLREILMMA+K IKTPS
Sbjct: 1171 LCAPGEPVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMMASKNIKTPS 1230
Query: 631 MEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCFIPA 690
MEIPFLP + LE+KA L K +TR+ +ADVLEKV + L + P Y ++F F+P
Sbjct: 1231 MEIPFLP-VENLEEKAEDLRKMLTRVVVADVLEKVDVTVELNVEPVRQHRYTLRFQFLPR 1289
Query: 691 HMYRDKTSVKPSKIIDHFERKFLKELEVAIAK--RAAQGLKNMNIEQSRDQMEDDVEDDE 748
Y++ V P I+ H RKF E+ AI K + L M+ E+ + DD E+
Sbjct: 1290 KYYKNDFYVGPKYILKHMTRKFFGEMFTAIRKLSKVTSNLVMMDEEKRQKASNDDEEETN 1349
Query: 749 GEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNT 808
A + SSDEE ++ + ++ K Q D+ +EPE+ ER +ED T
Sbjct: 1350 DADAN---------EDSSDEEPEDTEDAKTGNKFKQIHDD--QEPEESEREDSGDEDTET 1398
Query: 809 SNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLF-LP----------- 856
+ D TN + VV +N Y YD K H WC++ F LP
Sbjct: 1399 AP-------PVDDKTN---EAVVESYNFAQNYIYDTKKHHWCEITFGLPLEFKKLDLTAI 1448
Query: 857 -------SNLFEEKESKH----------LLKTDGINVNFISQYRHLLDLNKLYVNDIHYM 899
S L+E K L+TDGIN+ +S+Y LLDLN+L NDIH M
Sbjct: 1449 LRDVAAKSVLWETPNIKRAITYMKNDVLTLRTDGINILEMSKYHALLDLNRLNCNDIHKM 1508
Query: 900 ASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSF 959
A TYGIEAA ++I++EV++VF VYGI+VDPRHLSL+ADYMT +GT+ ++R G+ + S
Sbjct: 1509 AETYGIEAAMKIIVKEVQDVFNVYGIKVDPRHLSLIADYMTFNGTFEPLSRKGMESSASP 1568
Query: 960 IQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNR 1009
+Q+MTFE L +R A++ G+ D+L PS+ +M+G+ C GTG F++ ++
Sbjct: 1569 LQQMTFESSLTFLRNATIGGKRDNLTNPSSCLMVGKPCVTGTGCFEVLHK 1618
>gi|170067707|ref|XP_001868588.1| DNA-directed RNA polymerase I largest subunit [Culex
quinquefasciatus]
gi|167863791|gb|EDS27174.1| DNA-directed RNA polymerase I largest subunit [Culex
quinquefasciatus]
Length = 1692
Score = 874 bits (2257), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/1141 (43%), Positives = 694/1141 (60%), Gaps = 151/1141 (13%)
Query: 2 DGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLT 57
DG NA S ++EA L+ V QYLVPKDG+PL GLIQDH++S KL +R F
Sbjct: 571 DGDEMNAHFPQSELARSEAYNLVAVPHQYLVPKDGTPLGGLIQDHIVSAVKLFIRGKFFN 630
Query: 58 RAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELL 117
R +Y LV+QAL +I LPPTI KP LW+GKQ++ST++ N+ P+
Sbjct: 631 RDDYQQLVFQALSNHRGDIELLPPTILKPARLWSGKQIISTIVKNIIPR----------- 679
Query: 118 SGILDKKQFGSTQYGLVHAVWDT---------------------HVTIRHGELLSGILDK 156
G+ G+++ G H W T V IR+GELL GILDK
Sbjct: 680 -GMPHINMIGTSKLGNKH--WQTAPPRPWTAGGTPLTGNQMSESEVFIRNGELLVGILDK 736
Query: 157 KQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKR 216
FG+T YGL+H +++ +G + LLS L++LFT YLQ GFTLGVRDILV+++ D+KR
Sbjct: 737 NHFGATPYGLIHCMYELYGGNCSTLLLSSLSRLFTYYLQWEGFTLGVRDILVQKQADKKR 796
Query: 217 TKIINKARRLGTEAACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVT 276
TKII + R++G AA AL LP D PE+++++++EAYA P+FRA +DRQYKS LD
Sbjct: 797 TKIIQECRKIGHSAAAAALDLPPDVSPEVLNAKMEEAYAKDPKFRAILDRQYKSALDPFN 856
Query: 277 NNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGR 336
N IN+ C+P+GLI FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEGKRP +M+SG+
Sbjct: 857 NQINEACIPDGLISKFPDNNLQLMVQSGAKGSTVNTMQISCLLGQIELEGKRPPLMISGK 916
Query: 337 TLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLV 396
+LPSF +E SP++GGF+DGRFMTGIQPQ+FFFHCMAGREGLIDTAVKTSRSGYLQRCLV
Sbjct: 917 SLPSFASFETSPKSGGFIDGRFMTGIQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCLV 976
Query: 397 KHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYL-TDKQFSFLEDNIKWICSYKV 455
KHLEGL V+YDMTVRDSD S++Q +YGEDG+D++K Q++ T KQ FL+ N I ++
Sbjct: 977 KHLEGLNVNYDMTVRDSDNSVVQFMYGEDGMDISKAQFIETSKQLRFLDLNRDAIVRPEI 1036
Query: 456 ILNLLKKHPLSLALLLLL-------------------------------TFKSS-GKPNF 483
L+ + L+ + L T + S P+
Sbjct: 1037 TKKLVNEDDLNEQIKAHLKKVKAWNKKQGSLVQKRKISAFAKFSAETAETLRESMNDPDR 1096
Query: 484 IFS-PHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADS 542
+ S RT+ T L ++WY++D + + K+ +K CP PL S F+PD+ FG+++E+L +
Sbjct: 1097 LKSKTGRTRLTEKLAKKWYKMDPEVKAKFLRKHPRCPDPLFSVFRPDSCFGALTEHLEEL 1156
Query: 543 VVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAG 602
V Y + + + + KN +LA PGE VG+LAAQSIGEPSTQMTLNTFHFAG
Sbjct: 1157 VKNYENSQQTPQDMSQLMKI---KNSGALAAPGEPVGLLAAQSIGEPSTQMTLNTFHFAG 1213
Query: 603 RGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLP--DMPKLEKKANRLAKSMTRITMAD 660
RG+MNVTLGIPRLREILM+A++ IKTPSMEIPF P KLE A R+ +++ R+T+AD
Sbjct: 1214 RGEMNVTLGIPRLREILMLASRNIKTPSMEIPFKPHKSAKKLEAIAERMRRTLNRVTVAD 1273
Query: 661 VLEKVKIKEWLEISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAI 720
VLE +K+K L + P M + ++F F+P Y+ V P +I+ + R F + + I
Sbjct: 1274 VLEDIKVKSRLVLRPSRGMQHVIRFSFLPPDAYQHDYRVGPKEILHYMSRNFFRHMFRII 1333
Query: 721 AKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAA-------LGRV------DVSSD 767
K A KN+ IE +++ + D D G G E A + R+ D SS+
Sbjct: 1334 FKSAKT--KNVLIEIAQESSKKDAADSSGGGPEIDEQAVDSHEPDMSRLKEADDGDASSE 1391
Query: 768 EERD------EEDAVQSHKKVNQEEDNDFE---------------EPEDEERMSEREEDD 806
++ D + DA +S +K + +D +E PE EE +
Sbjct: 1392 DDEDGNANEGDADATESRRKNKKSDDVGYESEEDDDDGEEDEMPNSPEGEENAEGQAAKG 1451
Query: 807 NTSNIGERFKIEFRDSTNVFVKD------VVNQHNIVHKYSYDKKNHMWCKLLF-LP--- 856
G K E D +++ + + V Q +++ Y+YDK++ W ++ F +P
Sbjct: 1452 EEEGEGGEEKDEALDVSDIQLNEDTEKMLVTKQSDMISDYTYDKEHFRWVQVSFHMPMKY 1511
Query: 857 --------------------------SNLFEEKESKHLLKTDGINVNFISQYRHLLDLNK 890
+ F + + H LKTDGINV +++Y +LDLN+
Sbjct: 1512 KDIDFTKILREISEKCVVWEVPNIRRAITFRQNDQLH-LKTDGINVFAMTKYAEILDLNR 1570
Query: 891 LYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNR 950
+Y NDI+ +A TYGIEAA+RVI++EV+NVF VYGIE++PRHL LVADYMT GT+ +++R
Sbjct: 1571 MYSNDIYAVAQTYGIEAASRVIVKEVQNVFKVYGIEINPRHLLLVADYMTADGTFKSLSR 1630
Query: 951 NGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNRE 1010
G+ N S +Q+++FE ++ ++ A+++G D L +PS+R+M+G+ C+ GTG F L N+
Sbjct: 1631 KGMEANVSPLQQISFESSIQFLKAATLKGNGDHLDSPSSRLMVGKLCKSGTGSFGLYNQI 1690
Query: 1011 K 1011
K
Sbjct: 1691 K 1691
>gi|340715117|ref|XP_003396066.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
RPA1-like [Bombus terrestris]
Length = 1713
Score = 862 bits (2226), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/1118 (42%), Positives = 681/1118 (60%), Gaps = 129/1118 (11%)
Query: 2 DGWTQNASH----FLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLT 57
DG NA + ++E + NVS+QYLVPKDG+PLSGLIQDH++SG +L++R TF +
Sbjct: 588 DGDEMNAHYPQNELARSEGYNIANVSNQYLVPKDGTPLSGLIQDHMVSGVRLTVRGTFFS 647
Query: 58 RAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELL 117
R +YM LVY AL + I LPP+I KP+PLW+GKQ++STVIIN+ P ++ R
Sbjct: 648 REDYMQLVYAALSTIQDNIILLPPSIIKPVPLWSGKQIVSTVIINIIPPNQA--RINLTA 705
Query: 118 SGILDKKQF---------GSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVH 168
+ ++ K++ T++ + + V IR+GELL G+LDK +G+T +GL+H
Sbjct: 706 NAKINVKEWQVEKPRQWKCGTEFLNPKTMSEAEVIIRNGELLCGVLDKTHYGATPFGLIH 765
Query: 169 AVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGT 228
+++ +G + LLS KLF LQR GFTLG+ DIL+ + D+KR +II+ R++G
Sbjct: 766 CIFELYGGICSTKLLSAFGKLFQAALQRNGFTLGIEDILLLNKADKKRKEIISNCRKIGE 825
Query: 229 EAACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGL 288
+ L LP D +I++S+++E+Y S P+FRAQIDR+YKS LD TN+IN+VCLP GL
Sbjct: 826 NIQRSVLELPDDIPMDIVTSKIEESYWSDPKFRAQIDRKYKSALDVYTNDINKVCLPAGL 885
Query: 289 IEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSP 348
++ FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEGKRP +M+SG++LPSF Y+ +P
Sbjct: 886 LKKFPDNNLQLMVQSGAKGSTVNTMQISCLLGQIELEGKRPPLMISGKSLPSFPAYDPTP 945
Query: 349 RAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDM 408
RAGGF+DGRFMTGI+PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEGL+++YD
Sbjct: 946 RAGGFIDGRFMTGIKPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSINYDS 1005
Query: 409 TVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNL--------- 459
TVRDSD S++Q+ YGEDGLD+ Q+L +Q +FL DN I + +++ NL
Sbjct: 1006 TVRDSDGSMVQIYYGEDGLDIPGSQFLRKEQLNFLIDNKNAILNEEIVKNLKMDSDTDKI 1065
Query: 460 ------LKK--------------HPLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQ 499
+KK P + + K S + R+K ++ L+ +
Sbjct: 1066 LKVVRKIKKWESKNGSVLQKRRISPFTRFSREDMNIKKSKYKEINENNGRSKASLSLMRK 1125
Query: 500 WYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDK- 558
W + ++ +K + CP P++S ++ D FG SE L + + +Y +++ S + K
Sbjct: 1126 WLRTSEEDKKWIYAECARCPDPIMSKYRQDIDFGVFSERLENLMDEYIANKSNNSIIKKK 1185
Query: 559 -FYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLRE 617
D++ K + + PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVTLGIPRLRE
Sbjct: 1186 DLRDLLSVKVMKIVCPPGEPVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLRE 1245
Query: 618 ILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEP 677
ILMMA+K IKTPSMEIPF D+ + K++N+L +T+ +++VL+ + + LE SP
Sbjct: 1246 ILMMASKNIKTPSMEIPFRKDLKNVTKRSNKLRLQLTKCILSNVLDNINVSRKLEQSPNR 1305
Query: 678 HMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSR 737
+ Y M ++P Y+ + V+P +++ E F KE+ I K A + +E+ +
Sbjct: 1306 QLVYTMTINYLPHKCYKSEFCVQPYEVLKKTEEVFFKEMFKEIKKIAKVTGVLVYVEEEK 1365
Query: 738 DQM-EDDVEDDEGEGAEGAGAALGRVDVSSDEERDEED------------AVQSHKKVNQ 784
M EDD D+ E EGA +AL ++ E +E+ ++ HK+ NQ
Sbjct: 1366 KSMYEDDALLDQAEPEEGAESALKHANLGEMHESSDEEAAAEDADATLLRSISRHKE-NQ 1424
Query: 785 EE----------------DNDFEEPEDEE--------------RMSEREEDDNTSNIGER 814
E D+ E E+E+ +E E+ D N E
Sbjct: 1425 EYEDPEEEEEIEDINEREDDIVVEHENEKLKTNDQQQDEDDDDYDTEHEKSDYIVN--ET 1482
Query: 815 FKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLF-LPSNL-------------- 859
+ + + +D+ N + V +Y YD+ WCKL F LP +
Sbjct: 1483 YSTQRK-------RDIKNMYTHVIEYDYDEDKFTWCKLTFWLPLKMLKLDLPTITRNVAN 1535
Query: 860 ---------------FEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYG 904
F+ + +LKTDGIN+ + +Y L+LNKLY NDI+ ++ TYG
Sbjct: 1536 RVVLWEVPCVKRAFTFQNNNGETILKTDGINIVEMFKYDKSLNLNKLYSNDIYGISQTYG 1595
Query: 905 IEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMT 964
IEAANRVII+EV++VF +YGI VD RHLSL+ADYMT G + ++R G+ + S +Q+M+
Sbjct: 1596 IEAANRVIIKEVRDVFKMYGITVDSRHLSLIADYMTFDGRFQPLSRKGMEGSASPLQQMS 1655
Query: 965 FEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTG 1002
FE L ++ A+++G+ D+L +PS+R+MLGQ C+ GTG
Sbjct: 1656 FESSLNFLKNATLEGKRDNLVSPSSRLMLGQPCKSGTG 1693
>gi|383860778|ref|XP_003705866.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Megachile
rotundata]
Length = 1702
Score = 861 bits (2224), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/1103 (43%), Positives = 676/1103 (61%), Gaps = 109/1103 (9%)
Query: 2 DGWTQNASHF-----LKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA HF ++E + NVS+QYLVPKDG+PLSGLIQDH+ISG +L++R F
Sbjct: 589 DGDEMNA-HFPQNELARSEGYNIANVSNQYLVPKDGTPLSGLIQDHMISGVRLTVRGAFF 647
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL 116
+R +YM LVY AL + +I LPP+I KP PLW+GKQ++STVIIN+ P ++ R
Sbjct: 648 SRIDYMQLVYAALSTIKDDIILLPPSIIKPTPLWSGKQIVSTVIINIIPPNQA--RINLT 705
Query: 117 LSGILDKKQF---------GSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLV 167
S ++ K++ T++ + + V IR+GELL G+LDK +G+T +GL+
Sbjct: 706 ASAKINAKEWQVAKARRWRCGTEFSNPKTMSEAEVIIRNGELLCGVLDKTHYGATPFGLI 765
Query: 168 HAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLG 227
H V++ +G + + LLS KLF LQ GFTLG+ DIL+ ++ D KR +II+ R +G
Sbjct: 766 HCVFELYGGDCSTKLLSAFGKLFQAGLQLNGFTLGIEDILLLKKADTKRREIISNCRNIG 825
Query: 228 TEAACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEG 287
+ + L LP DT ++++S+++E+Y S P+FRAQ+DR+YK+ LD TN+IN+ CLP G
Sbjct: 826 EDIQKSILELPDDTSTDVVTSKMEESYWSNPKFRAQVDRKYKTALDVYTNDINKTCLPAG 885
Query: 288 LIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVS 347
L++ FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEGKRP +M+SG++LPSF Y+ +
Sbjct: 886 LLKKFPDNNLQLMVQSGAKGSTVNTMQISCLLGQIELEGKRPPLMISGKSLPSFPAYDPT 945
Query: 348 PRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYD 407
PRAGGF+DGRFMTGI+PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEGL ++YD
Sbjct: 946 PRAGGFIDGRFMTGIKPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLVINYD 1005
Query: 408 MTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDN------------IKWICSYKV 455
TVRDSD SL+Q+ YGEDGLDV ++L +Q +FL DN +K +
Sbjct: 1006 TTVRDSDGSLVQIYYGEDGLDVPGSRFLRKEQINFLVDNKNAIIDEEDARYLKEVSDTDK 1065
Query: 456 ILNLLK-------KHPLSLALLLLLTF-----------KSSGKPNFIFSPHRTKFTMDLL 497
IL L+K KH SL + F K+S + R+K + L+
Sbjct: 1066 ILKLVKRIKKWESKHGSSLQKRRISPFAKFCVENTNTIKASKFKRLDENSGRSKAALSLM 1125
Query: 498 EQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKY---TKGRTDAS 554
+W + ++ RK + CP P++S ++ D FG +SE L + +Y T D S
Sbjct: 1126 RKWIRTTEEERKPIYNQCTECPDPVMSKYRQDVDFGVLSERLEKLIDEYMASTSRNVDVS 1185
Query: 555 HVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPR 614
D D++ K + + PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVTLGIPR
Sbjct: 1186 RKD-LRDILSMKVMKIVCPPGEPVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPR 1244
Query: 615 LREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEIS 674
LREILMMA+K IKTPSMEIPF D+ + K +NRL +T+ +++VL+ + + L+ +
Sbjct: 1245 LREILMMASKNIKTPSMEIPFRNDLKNVTKVSNRLKLKLTKCILSNVLDNISVNRKLKHT 1304
Query: 675 PEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIE 734
P + Y + F+P Y+ + V+P +I+ E F KE+ I K A +++E
Sbjct: 1305 PNRQLVYTINMNFLPYKSYKGEFCVQPHEILKKTEFVFFKEMFREIKKVAKVAGALLHVE 1364
Query: 735 QSRDQ-MEDDVEDDEGEGAEGAG----AALGRV-------------------DVSSDEER 770
+ + ++D D+ E EGA A LG + +S E
Sbjct: 1365 EEKKSPYDNDALLDQAEPDEGAEYRPRANLGEMHESSDEEEAAEDADATLTRSISRHNEN 1424
Query: 771 DEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNTSNIGERFKIEFRDSTNVFVKDV 830
E + + + + E +D E E+E +E E + E K E S+N +DV
Sbjct: 1425 QEYEDPEEEEIDDANEKDDDVEMENER--TEGTEQPEEEDEAEYTKTEV--SSNRRKRDV 1480
Query: 831 VNQHNIVHKYSYDKKNHMWCKLLF-LPSNL-----------------------------F 860
++ V Y YD++ + WCKL F LP N+ F
Sbjct: 1481 KGMYHNVLDYDYDEEKYSWCKLTFWLPLNMIKLDLPRIIRTVAEKVVLWEVPYLKRAFTF 1540
Query: 861 EEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 920
+ +LKTDGIN+ + +Y LDLNKLY NDI+ ++ TYGIEAANRVI++EVK+VF
Sbjct: 1541 QNNTGDTILKTDGINIIEMFKYDKSLDLNKLYSNDIYGISQTYGIEAANRVIMKEVKDVF 1600
Query: 921 AVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGR 980
+YGI VD RHLSL+ADYMT GT+ ++R G+ + S +Q+++FE L ++ A++QG+
Sbjct: 1601 KMYGITVDIRHLSLIADYMTFDGTFQPLSRKGMEDSASPLQQISFESSLTFLKNATLQGK 1660
Query: 981 EDSLRAPSARVMLGQECRQGTGL 1003
D+L +PS+R+MLGQ C+ GTG+
Sbjct: 1661 RDNLVSPSSRLMLGQPCKAGTGI 1683
>gi|350414724|ref|XP_003490399.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Bombus
impatiens]
Length = 1713
Score = 855 bits (2210), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/1119 (42%), Positives = 678/1119 (60%), Gaps = 131/1119 (11%)
Query: 2 DGWTQNASH----FLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLT 57
DG NA + ++E + NVS+QYLVPKDG+PLSGLIQDH++SG +L++R TF
Sbjct: 588 DGDEMNAHYPQNELARSEGYNIANVSNQYLVPKDGTPLSGLIQDHMVSGVRLTVRGTFFP 647
Query: 58 RAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKD---------- 107
R +YM LVY AL + I LPP+I KP+PLW+GKQ++STVIIN+ P +
Sbjct: 648 REDYMQLVYAALSTIQDNIILLPPSIIKPVPLWSGKQIVSTVIINIIPPNQARINLTANA 707
Query: 108 KVIIRHGELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLV 167
K+ ++ ++ ++ T++ + + V IR+GELL G+LDK +G+T +GLV
Sbjct: 708 KISVKEWQVEKA---RQWKCGTEFLDPKTMSEAEVIIRNGELLCGVLDKTHYGATPFGLV 764
Query: 168 HAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLG 227
H +++ +G + LLS KLF LQR GFTLG+ DIL+ + D+KR +II+ R++G
Sbjct: 765 HCIFELYGGICSTKLLSAFGKLFQAALQRNGFTLGIEDILLLNKADKKRKEIISNCRKIG 824
Query: 228 TEAACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEG 287
+ L LP D +I++S+++E+Y S P+FRAQIDR+YKS LD TN+IN+VCLP G
Sbjct: 825 ENIQRSVLELPDDIPMDIVTSKIEESYWSDPKFRAQIDRKYKSALDVYTNDINKVCLPAG 884
Query: 288 LIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVS 347
L++ FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEGKRP +M+SG++LPSF Y+ +
Sbjct: 885 LLKKFPDNNLQLMVQSGAKGSTVNTMQISCLLGQIELEGKRPPLMISGKSLPSFPAYDPT 944
Query: 348 PRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYD 407
PRAGGF+DGRFMTGI+PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEGL+++YD
Sbjct: 945 PRAGGFIDGRFMTGIKPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSINYD 1004
Query: 408 MTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNL-------- 459
TVRDSD S++Q+ YGEDGLD+ Q+L +Q SFL DN I + +++ NL
Sbjct: 1005 STVRDSDGSMVQIYYGEDGLDIPGSQFLRKEQLSFLIDNKNAILNEEIVKNLKMDSDTDK 1064
Query: 460 -------LKK--------------HPLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLE 498
+KK P + + K S + R+K ++ L+
Sbjct: 1065 ILKVVRKIKKWESKNGSALQKRRISPFTRFSREDMNIKKSKYKEINENSGRSKASLSLMR 1124
Query: 499 QWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDK 558
+W + ++ +K + CP P++S ++ D FG SE L + + +Y +++ + K
Sbjct: 1125 KWLKTSEEDKKWIYAECTRCPDPIMSKYRQDIDFGVFSERLENLMDEYIGSKSNNLIIKK 1184
Query: 559 --FYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLR 616
D++ K + + PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVTLGIPRLR
Sbjct: 1185 KDLRDLLSVKVMKIVCPPGEPVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLR 1244
Query: 617 EILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPE 676
EILMMA+K IKTPSMEIPF D+ + K++N+L +T+ +++VL+ + + +E P
Sbjct: 1245 EILMMASKNIKTPSMEIPFRKDLKNVTKRSNKLRLQLTKCILSNVLDNINVSRKMEQLPN 1304
Query: 677 PHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQS 736
+ Y M ++P Y+ + ++P +++ E F KE+ I K A + +E+
Sbjct: 1305 RQLVYTMTINYLPHKCYKSEFCIQPHEVLKKTEEVFFKEMFKEIKKIAKVTGALVYVEEE 1364
Query: 737 RDQM-EDDVEDDEGEGAEGAGAALGRVDVSSDEERDEED------------AVQSHKKVN 783
+ M EDD D+ E EGA +AL ++ E +E+ ++ H++ N
Sbjct: 1365 KKSMYEDDALLDQAEPDEGAESALKHANLGEMHESSDEEAAAEDADATLLRSISRHRE-N 1423
Query: 784 Q----------------EEDNDFEEPEDEE--------------RMSEREEDDNTSNIGE 813
Q ED+ E E+E+ +E E+ D N E
Sbjct: 1424 QEYEDPEEEEEIEDINEREDDIVVEHENEKLKTNDQPQDEDDDDYDTEHEKPDYVVN--E 1481
Query: 814 RFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLF-LPSNL------------- 859
+ + + +D+ N + V +Y YD+ WCKL F LP +
Sbjct: 1482 TYSAQRK-------RDIKNMYTHVIEYDYDEDKFTWCKLTFWLPLKMLKLDLPTITRNVA 1534
Query: 860 ----------------FEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTY 903
F+ + +LKTDGIN+ + +Y L+LNKLY NDI+ ++ TY
Sbjct: 1535 NRVVLWEVPHVKRAFTFQNNNGETILKTDGINIVEMFKYDKSLNLNKLYSNDIYGISQTY 1594
Query: 904 GIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKM 963
GIEAANRVII+EV++VF +YGI VD RHLSL+ADYMT G + ++R G+ + S +Q+M
Sbjct: 1595 GIEAANRVIIKEVRDVFKMYGITVDSRHLSLIADYMTFDGRFQPLSRKGMEGSASPLQQM 1654
Query: 964 TFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTG 1002
+FE L ++ A+++G+ D+L +PS+R+MLGQ C+ GTG
Sbjct: 1655 SFESSLNFLKNATLEGKRDNLVSPSSRLMLGQPCKSGTG 1693
>gi|125808018|ref|XP_001360603.1| GA10089 [Drosophila pseudoobscura pseudoobscura]
gi|54635775|gb|EAL25178.1| GA10089 [Drosophila pseudoobscura pseudoobscura]
Length = 1647
Score = 855 bits (2208), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/1091 (44%), Positives = 669/1091 (61%), Gaps = 101/1091 (9%)
Query: 2 DGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLT 57
DG NA S +AEA L+NV+S YLVPKDG+PL GLIQDHVISG KLS+R F
Sbjct: 567 DGDEMNAHYPQSEVARAEAYNLVNVASNYLVPKDGTPLGGLIQDHVISGVKLSIRGRFFN 626
Query: 58 RAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELL 117
R +Y LV+Q L L +++ LPPT+ KP LW+GKQVLST+IINL P +I
Sbjct: 627 REDYQQLVFQGLSNLKGDVKLLPPTLIKPAMLWSGKQVLSTIIINLIPDGYELIN----- 681
Query: 118 SGILDK-KQFGSTQYGLV-------------HAVWDTHVTIRHGELLSGILDKKQFGSTQ 163
LD + G + + H + ++ V IR GELL G+LDK+Q+G+T
Sbjct: 682 ---LDSFAKIGGKNWNVARPRPALHGSNPQEHELSESQVQIRRGELLVGVLDKQQYGATT 738
Query: 164 YGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKA 223
+GL+H +++ +G + + LL+ K+FT +LQ GFTLGV+DILV E DRKR +II +
Sbjct: 739 FGLIHCMYELYGGDVSTRLLTAFTKVFTFFLQLEGFTLGVKDILVTGEADRKRRQIIQEC 798
Query: 224 RRLGTEAACNALGLPLDTDP-EIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQV 282
R +G A AL L D P + ++ Q++EAY P+FR +DR+YKSLLD TN+IN+
Sbjct: 799 RDVGNSAVAAALELD-DVPPHDELAEQMEEAYVKDPKFRVLLDRKYKSLLDGFTNDINKT 857
Query: 283 CLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFL 342
CLP GLI FP+NNLQ MV SGAKGS VNTMQISCLLGQIELEGKRP +M+SG++LPSF
Sbjct: 858 CLPGGLITKFPSNNLQLMVLSGAKGSMVNTMQISCLLGQIELEGKRPPLMISGKSLPSFT 917
Query: 343 PYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGL 402
+E SP++GGF+DGRFMTGIQPQ+FFFHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEGL
Sbjct: 918 SFETSPKSGGFIDGRFMTGIQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGL 977
Query: 403 TVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFS-FLEDNIKWICS--------- 452
+VHYD+TVRDSD S++Q LYGEDGLD+ K ++ +K + FL N I
Sbjct: 978 SVHYDLTVRDSDNSVVQFLYGEDGLDILKSKFFNEKFCADFLTQNASAILRPSLLQMMKD 1037
Query: 453 ----------YKVILNLLKKHPLSLALLL------LLTFKSSGKPNFIFS-PHRTKFTMD 495
K I + KK P L L +PN I + R++F
Sbjct: 1038 EEGLAKVLRHEKHIRSWEKKKPAKLRAAFTHFSEELREEVEVKRPNEINAKTGRSRFDEG 1097
Query: 496 LLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASH 555
LL+ W + D + + YRKK+ CP P ++ ++ D ++GS+SE + Y R S
Sbjct: 1098 LLKLWKKADAEDKALYRKKYAPCPDPSVAVYKQDLYYGSVSERTRKLIDDY--ARKQPSQ 1155
Query: 556 VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRL 615
D D++ K++ +LA PGE VG++AAQSIGEPSTQMTLNTFHFAGRG+MNVTLGIPRL
Sbjct: 1156 KDTIGDIMRMKSIKALAAPGEPVGLIAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRL 1215
Query: 616 REILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISP 675
REILM+A+ IKTPSM+IP P + +A +L ++ +T+A++LE V I L + P
Sbjct: 1216 REILMLASSNIKTPSMDIPIRPGQ---QAQAEKLRIALNCVTLANLLESVHISTSLSLEP 1272
Query: 676 EPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAK--RAAQGLKNMNI 733
E Y+++F F+P +Y++ V+P +II + + + K+L AI K A + K + I
Sbjct: 1273 ERAYEYELRFQFLPREVYKEDYGVRPKRIIKYMHQTYFKQLIRAILKVSNAKKTSKIIEI 1332
Query: 734 EQSRDQMEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDND---- 789
+ ++ + ED++ + A+ G G D D D D + K+ Q + ++
Sbjct: 1333 DDKKEGENNKDEDNDLDNADYMGPNKGAADNDEDSSDDGGDDDTTGLKLKQRKTDEKDYD 1392
Query: 790 ----FEEPEDEERMSEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKK 845
EE D E +E+D E D + V+ +++ + +V Y++DK+
Sbjct: 1393 DPDDVEELHDANDDDEEQEEDQDEEENGGDGNENADVDDKSVEKLLS-NQMVKDYTFDKE 1451
Query: 846 NHMWCKLLF--------------------------LP----SNLFEEKESKHLLKTDGIN 875
NH+WCK+ +P + +++ + + LLKTDGIN
Sbjct: 1452 NHLWCKVKLQLSVRYQKPDLTSIIRELAAKSVVHQVPHIKRAIIYKGNDDEQLLKTDGIN 1511
Query: 876 VNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLV 935
+ + ++ +LD+N+LY NDIH +A TYGIEAA++VI++EV NVF VYGI VD RHLSL+
Sbjct: 1512 MGEMFHHKKVLDVNRLYSNDIHAIARTYGIEAASQVIVKEVSNVFKVYGITVDRRHLSLI 1571
Query: 936 ADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQ 995
ADYMT GT+ ++R G+ + S +Q+M+FE L+ ++ A+ GR D L +PS+R+M+G
Sbjct: 1572 ADYMTFDGTFQPLSRKGMEHSSSPLQQMSFESSLQFLKSAAGFGRSDDLNSPSSRLMVGL 1631
Query: 996 ECRQGTGLFQL 1006
R GTG F L
Sbjct: 1632 PVRNGTGAFDL 1642
>gi|327275261|ref|XP_003222392.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Anolis
carolinensis]
Length = 1690
Score = 853 bits (2205), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/1130 (43%), Positives = 677/1130 (59%), Gaps = 140/1130 (12%)
Query: 1 MDGWTQNASHFL-----KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTF 55
DG NA HF +AEA L QYLVPKDG+PL+GLIQDH++SG ++ R F
Sbjct: 574 FDGDEMNA-HFPQNELGRAEAYILACTDEQYLVPKDGTPLAGLIQDHMVSGTSMTTRGCF 632
Query: 56 LTRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGE 115
TR +Y LVYQ L +++ LPP+I KP LWTGKQV+ST++IN+ P+D + +
Sbjct: 633 FTREQYAELVYQGLTDKKGKVKLLPPSILKPQRLWTGKQVVSTLLINVIPEDHIPLN--- 689
Query: 116 LLSGILDKKQFGSTQY----------GLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYG 165
LSG K + G+ + + + ++ V IR+GELL G+LDK Q+GS+ YG
Sbjct: 690 -LSG---KAKIGAKAWMKQSSHRNYRTNIDFMCESEVIIRNGELLCGVLDKAQYGSSAYG 745
Query: 166 LVHAVWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKAR 224
LVH + +G E +L+ LA+LFT YLQ GFT+GV DILV+ DRKR K+I ++
Sbjct: 746 LVHCCHEVYGGETGGKVLTALARLFTAYLQFYKGFTMGVEDILVKHHADRKRCKVIKEST 805
Query: 225 RLGTEAACNALGLPLDTDPEIISSQLQEAYASIPQFRAQ-IDRQYKSLLDKVTNNINQVC 283
GT+A +A LP E + S+ Q+A+ Q +D ++K + + +N IN+VC
Sbjct: 806 HCGTKAIQDAFNLPHTASEEELRSKWQDAHLHKDQRDFHMVDLKFKEVANLCSNEINKVC 865
Query: 284 LPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLP 343
+P GL FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F P
Sbjct: 866 MPLGLHRSFPENNLQLMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMPSGKSLPCFQP 925
Query: 344 YEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLT 403
Y+ SP++GGFV RF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL
Sbjct: 926 YDFSPKSGGFVASRFLTGIKPSEFFFHCMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLI 985
Query: 404 VHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWI------------- 450
VHYD+TVRDSD S++Q LYGEDGLD+ K Q+L KQF F+ +N K I
Sbjct: 986 VHYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFIAENHKVIEKSKHFDEILSRM 1045
Query: 451 ------CSYKVILNLLKKHPLSL----ALLLLLTFKSSG------KPNFIFSPHRTKFTM 494
++ I KH + L L KS+G N ++ R T+
Sbjct: 1046 DPEQANGHFRCIKRWQAKHQMPLRREGGFLHFYRKKSAGIRSQIPTGNHVYG--RDPATL 1103
Query: 495 DLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK------ 548
LL+ WY+LD+K+R+KY KK CP P +S ++PD HFGS+SE + V +T
Sbjct: 1104 QLLKMWYELDEKSRRKYLKKTTKCPDPCLSVWRPDIHFGSVSETFENKVENFTGEWDTQN 1163
Query: 549 ----GRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRG 604
G+++ S + D++ K SL +PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG
Sbjct: 1164 DLSCGKSELSS-QRLKDLLHLKWQQSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRG 1222
Query: 605 DMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEK 664
+MNVTLGIPRLREILM+A+ IKTP M +P L + K K+A RL K +TR+ + +VLEK
Sbjct: 1223 EMNVTLGIPRLREILMVASANIKTPMMSVPVL-NTAKAHKRAKRLKKQLTRVCLGEVLEK 1281
Query: 665 VKIKEWLEISP--EPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAK 722
+ KE L + H Y ++F F+P YR++ VKPS I+ E +F K L I K
Sbjct: 1282 IDTKESLRLEEMQNKHRFYTIRFSFLPYECYREEKYVKPSDILRFMESRFFKMLLETIKK 1341
Query: 723 RAAQGLKNMNIEQSRDQMEDDVED--------DEGEGAEGAGAALGRVDVSSDEERDEE- 773
++++ L N +R + DV D + + E GRV D E EE
Sbjct: 1342 KSSK-LALYNTVSTRRAAQRDVNDGVENVASQENQDNNEAEPEEEGRV---PDGETGEED 1397
Query: 774 -DAVQSHKKVNQEEDNDFE-----EPEDEERMSEREEDDNTSNIGE------------RF 815
DA + +K NQEE+ D+E E EDE+ + E+EE++ + E R
Sbjct: 1398 ADAADAKRKANQEEEVDYESDDANETEDED-IPEQEENEVNPDEPESQDEPSAPCPLRRK 1456
Query: 816 KIEFRDSTNVF----VKDVVNQHNIVHKYSYDKKNHMWCKLLF----------LPS---- 857
+ + N F + V+ H + Y+YD N +WC++ LPS
Sbjct: 1457 SHKKKKEPNEFAQQRISAVLESHGAIESYTYDTDNELWCEISLKLPLIKEYFDLPSLVTS 1516
Query: 858 ---------------NLFEEKESKH-----LLKTDGINVNFISQYRHLLDLNKLYVNDIH 897
L E +K+ L+T+GIN+ + +Y ++D+NKLY NDIH
Sbjct: 1517 LANNIVIHETKGITRCLLNETSNKNGEVVLTLQTEGINLPELFRYADIIDVNKLYCNDIH 1576
Query: 898 YMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNP 957
+ASTYGIEAA +V+ +E+K+VFA YGI VDPRHLSLV+DYM G Y +NR+GI+ +
Sbjct: 1577 AVASTYGIEAALKVLEKEIKDVFAAYGIVVDPRHLSLVSDYMCFEGIYKPLNRHGIQSSS 1636
Query: 958 SFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLR 1007
S +Q+MTFE + +++A+M G D L++PSA +++G+ + GTGLF+L+
Sbjct: 1637 SPLQQMTFETSYKFLKEATMLGSHDELQSPSACLVVGKVVKGGTGLFELK 1686
>gi|195150452|ref|XP_002016168.1| GL11448 [Drosophila persimilis]
gi|194110015|gb|EDW32058.1| GL11448 [Drosophila persimilis]
Length = 1647
Score = 853 bits (2204), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/1091 (44%), Positives = 668/1091 (61%), Gaps = 101/1091 (9%)
Query: 2 DGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLT 57
DG NA S +AEA L+NV+S YLVPKDG+PL GLIQDHVISG KLS+R F
Sbjct: 567 DGDEMNAHYPQSEVARAEAYNLVNVASNYLVPKDGTPLGGLIQDHVISGVKLSIRGRFFN 626
Query: 58 RAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELL 117
R +Y LV+Q L L +++ LPP + KP LW+GKQVLST+IINL P +I
Sbjct: 627 REDYQQLVFQGLSNLKGDVKLLPPALIKPAVLWSGKQVLSTIIINLIPDGYELIN----- 681
Query: 118 SGILDK-KQFGSTQYGLV-------------HAVWDTHVTIRHGELLSGILDKKQFGSTQ 163
LD + G + + H + ++ V IR GELL G+LDK+Q+G+T
Sbjct: 682 ---LDSFAKIGGKNWNVARPRPALHGSNPQEHELSESQVQIRRGELLVGVLDKQQYGATT 738
Query: 164 YGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKA 223
+GL+H +++ +G + + LL+ K+FT +LQ GFTLGV+DILV E DRKR +II +
Sbjct: 739 FGLIHCMYELYGGDVSTRLLTAFTKVFTFFLQLEGFTLGVKDILVTGEADRKRRQIIQEC 798
Query: 224 RRLGTEAACNALGLPLDTDP-EIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQV 282
R +G A AL L D P + ++ Q++EAY P+FR +DR+YKSLLD TN+IN+
Sbjct: 799 RDVGNSAVAAALELD-DVPPHDELAEQMEEAYVKDPKFRVLLDRKYKSLLDGFTNDINKT 857
Query: 283 CLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFL 342
CLP GLI FP+NNLQ MV SGAKGS VNTMQISCLLGQIELEGKRP +M+SG++LPSF
Sbjct: 858 CLPGGLITKFPSNNLQLMVLSGAKGSMVNTMQISCLLGQIELEGKRPPLMISGKSLPSFT 917
Query: 343 PYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGL 402
+E SP++GGF+DGRFMTGIQPQ+FFFHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEGL
Sbjct: 918 SFETSPKSGGFIDGRFMTGIQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGL 977
Query: 403 TVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFS-FLEDNIKWICS--------- 452
+VHYD+TVRDSD S++Q LYGEDGLD+ K ++ +K + FL N I
Sbjct: 978 SVHYDLTVRDSDNSVVQFLYGEDGLDILKSKFFNEKFCADFLTQNASAILRPSLLQVMKD 1037
Query: 453 ----------YKVILNLLKKHPLSLALLL------LLTFKSSGKPNFIFS-PHRTKFTMD 495
K I + KK P L L +PN I + R++F
Sbjct: 1038 EEGLAKVLRHEKHIRSWEKKKPAKLRAAFTHFSEELREEVEVKRPNEINAKTGRSRFDEG 1097
Query: 496 LLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASH 555
LL+ W + D + + YRKK+ CP P ++ ++ D ++GS+SE + Y R S
Sbjct: 1098 LLKLWKKADAEDKALYRKKYAPCPDPSVAVYKQDLYYGSVSERTRKLIDDY--ARKQPSQ 1155
Query: 556 VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRL 615
D D++ K++ +LA PGE VG++AAQSIGEPSTQMTLNTFHFAGRG+MNVTLGIPRL
Sbjct: 1156 KDTIGDIMRMKSIKALAAPGEPVGLIAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRL 1215
Query: 616 REILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISP 675
REILM+A+ IKTPSM+IP P + +A +L ++ +T+A++LE V I L + P
Sbjct: 1216 REILMLASSNIKTPSMDIPIRPGQ---QAQAEKLRIALNCVTLANLLESVHISTSLSLEP 1272
Query: 676 EPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAK--RAAQGLKNMNI 733
E Y+++F F+P +Y++ V+P +II + + + K+L AI K A + K + I
Sbjct: 1273 ERAYEYELRFQFLPREVYKEDYGVRPKRIIKYMHQTYFKQLIRAILKVSNAKKTSKIIEI 1332
Query: 734 EQSRDQMEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDND---- 789
+ ++ + ED++ + A+ G G D D D D + K+ Q + ++
Sbjct: 1333 DDKKEGENNKDEDNDLDNADYMGPNKGAADNDEDSSDDGGDDDTTGLKLKQRKTDEKDYD 1392
Query: 790 ----FEEPEDEERMSEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKK 845
EE D E +EDD E D + V+ +++ + +V Y++DK+
Sbjct: 1393 DPDDVEELHDANDDDEEQEDDQEEEENGGDGNENADVDDKSVEKLLS-NQMVKDYTFDKE 1451
Query: 846 NHMWCKLLF--------------------------LP----SNLFEEKESKHLLKTDGIN 875
NH+WCK+ +P + +++ + + LLKTDGIN
Sbjct: 1452 NHLWCKVKLQLSVRYQKPDLTSIIRELAAKSVVHQVPHIKRAIIYKGNDDEQLLKTDGIN 1511
Query: 876 VNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLV 935
+ + ++ +LD+N+LY NDIH +A TYGIEAA++VI++EV NVF VYGI VD RHLSL+
Sbjct: 1512 MGEMFHHKKVLDVNRLYSNDIHAIARTYGIEAASQVIVKEVSNVFKVYGITVDRRHLSLI 1571
Query: 936 ADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQ 995
ADYMT GT+ ++R G+ + S +Q+M+FE L+ ++ A+ GR D L +PS+R+M+G
Sbjct: 1572 ADYMTFDGTFQPLSRKGMEHSSSPLQQMSFESSLQFLKSAAGFGRSDDLNSPSSRLMVGL 1631
Query: 996 ECRQGTGLFQL 1006
R GTG F L
Sbjct: 1632 PVRNGTGAFDL 1642
>gi|157134596|ref|XP_001663321.1| DNA-directed RNA polymerase I largest subunit [Aedes aegypti]
gi|108870419|gb|EAT34644.1| AAEL013134-PA [Aedes aegypti]
Length = 1686
Score = 845 bits (2184), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 492/1122 (43%), Positives = 687/1122 (61%), Gaps = 120/1122 (10%)
Query: 2 DGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLT 57
DG NA S ++EA L+ V QYLVPKDG+PL GLIQDH++S K+ +R F
Sbjct: 566 DGDEMNAHFPQSELARSEAYNLVAVPHQYLVPKDGTPLGGLIQDHIVSAVKIFIRGKFFN 625
Query: 58 RAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELL 117
R +Y LV+QAL +I LPPTI KP LW+GKQ++ST+I N+ PK + H ++
Sbjct: 626 RDDYQQLVFQALSNHRGDIDLLPPTILKPARLWSGKQIISTIIKNIIPKK---MPHINMI 682
Query: 118 -SGILDKKQFGSTQYGLVHA---------VWDTHVTIRHGELLSGILDKKQFGSTQYGLV 167
S L K + + HA + ++ V IR+GELL GILDK FG+T YGL+
Sbjct: 683 GSAKLGNKHWQTEPAREWHAGGTPLTGNQMSESEVIIRNGELLVGILDKNHFGATPYGLI 742
Query: 168 HAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLG 227
H +++ +G + LLS L++LF+ YLQ GFTLGV+DILV++ D+KR KII R++G
Sbjct: 743 HCMYELYGGHCSTLLLSSLSRLFSYYLQWEGFTLGVKDILVQKHADKKRAKIIKACRQVG 802
Query: 228 TEAACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEG 287
E A +AL LP D E ++S+++EAYA P+FRA +DR+YK+ LD TN IN+VCLP G
Sbjct: 803 HETAASALDLPPDVSAEELNSKMEEAYAKNPKFRAILDRKYKTALDSFTNQINEVCLPGG 862
Query: 288 LIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVS 347
LI FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEGKRP +M+SG++LPSF +E S
Sbjct: 863 LITKFPDNNLQLMVQSGAKGSTVNTMQISCLLGQIELEGKRPPLMISGKSLPSFASFETS 922
Query: 348 PRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYD 407
P++GGF+DGRFMTGIQPQ+FFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGL V+YD
Sbjct: 923 PKSGGFIDGRFMTGIQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLNVNYD 982
Query: 408 MTVRDSDLSLIQVLYGEDGLDVTKRQYL-TDKQFSFLEDNIKWICSYKVILNLL------ 460
MTVRDSD S++Q +YGEDG+D++K Q++ T K FL+ N I + + +L
Sbjct: 983 MTVRDSDNSVVQFMYGEDGMDISKAQFIETPKHLKFLDLNRDAIVQTETVKSLANDEDLN 1042
Query: 461 --------------KKHPLSLALLLLLTF------------KSSGKPNFIFSPH-RTKFT 493
KKH L + + F + P+ + S RT+ T
Sbjct: 1043 DQILRHVKKMKSWRKKHGDCLQKVRVSPFTKYSSEHSEEIRAAVSDPDRLKSKSGRTRLT 1102
Query: 494 MDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDA 553
++++W++ D + KY KK+ CP P S F+PD+ FGS++E+L V Y K +T
Sbjct: 1103 EKIVKKWHKADPSLKAKYAKKYSRCPDPTFSLFRPDSCFGSLTEHLEQLVQTYNKSQTPL 1162
Query: 554 SHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIP 613
+D +++ KN +LA PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVTLGIP
Sbjct: 1163 HDMD---ELMKVKNSYALAAPGEPVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIP 1219
Query: 614 RLREILMMATKAIKTPSMEIPF--LPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWL 671
RLREILM+A++ IKTPSMEIPF KL A R+ K++ R+T+ADVL+ + + L
Sbjct: 1220 RLREILMLASQRIKTPSMEIPFRAFKSHKKLNTAAERMRKTLNRVTVADVLQDIHVNSRL 1279
Query: 672 EISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNM 731
+ P M + ++F F+P Y V+P +I+ + F K + I++ A +
Sbjct: 1280 VLRPSRGMQHTVRFTFLPQDAYAHDYRVEPKQILKYMSGSFFKYMFRIISRSAKSKNVLI 1339
Query: 732 NIEQ-SRDQMEDDVEDDEGEGAEGAGAAL---GRVDVSSDEE----RDEEDAVQSHKKVN 783
IEQ S+ + + E+D+ + + D SSD+E DE DA +S K
Sbjct: 1340 EIEQESKAKQTESTENDDLVDSRAPNVSTRLEEEPDESSDDEAGGNEDEADATESKLKNK 1399
Query: 784 QEEDNDF----------------EEPEDEERMS-EREEDDNTSNIGERFKIEFRD----S 822
Q ++ + + ED+E+ S E ++ + E E D +
Sbjct: 1400 QSDEVGYDTDEDDDEEKDEDEMQDSLEDKEKESGEAPKEAEEAEEDEVVNEEDMDDELGA 1459
Query: 823 TNVFVKD------VVNQHNIVHKYSYDKKNHMWCKLLF-LPSNLFEEKESKHL------- 868
T+ ++D V+ +++ + +DKK H WC++ F +P + +K L
Sbjct: 1460 TDTVLEDEAIRMHVMKTSELINDFVFDKKEHRWCQVTFHMPLKYKDIDFTKILRDIAEKC 1519
Query: 869 ---------------------LKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEA 907
LKTDGIN+ ++++ LDLN+LY NDI+ +A TYGIEA
Sbjct: 1520 VVWEIPNIRRAITYVQNDQLYLKTDGINIYAMTKFYKSLDLNRLYSNDIYAIAQTYGIEA 1579
Query: 908 ANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEM 967
A RVI++EV+NVF VYGI ++PRHL LVADYMT GT+ +M+R G+ N S +Q+++FE
Sbjct: 1580 AARVIVKEVQNVFKVYGITINPRHLLLVADYMTADGTFKSMSRKGMESNVSPLQQISFES 1639
Query: 968 PLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNR 1009
++ ++ A+++G D L +PS+R+M+GQ C+ GTG F + ++
Sbjct: 1640 SIQFLKAAALKGNGDHLDSPSSRLMVGQLCKSGTGAFSVYSK 1681
>gi|194757042|ref|XP_001960774.1| GF13529 [Drosophila ananassae]
gi|190622072|gb|EDV37596.1| GF13529 [Drosophila ananassae]
Length = 1643
Score = 845 bits (2183), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/1092 (43%), Positives = 673/1092 (61%), Gaps = 106/1092 (9%)
Query: 2 DGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLT 57
DG NA S +AEA L+NV+S YLVPKDG+PL GLIQDHVISG KLS+R F
Sbjct: 566 DGDEMNAHYPQSEVARAEAHNLVNVASNYLVPKDGTPLGGLIQDHVISGVKLSIRGRFFN 625
Query: 58 RAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPK--DKVIIRHGE 115
R +Y LV+Q L L +++ LPP I KP+ LW+GKQ+LST+IINL P+ +++ +
Sbjct: 626 REDYQQLVFQGLSSLKKDVKLLPPAILKPVRLWSGKQILSTIIINLIPEGYERINLDSFA 685
Query: 116 LLSGI---LDKKQ---FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHA 169
+ G +D+ + GST + + ++ V IR GELL G+LDK+Q+G+T +GL+H
Sbjct: 686 KIGGKNWNVDRPRPPLCGSTIRD--NELDESQVQIRKGELLVGVLDKQQYGATTFGLIHC 743
Query: 170 VWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARR-LGT 228
+++ +G + + LL+ K+FT +LQ GFTLGV+DILV E D++R KI+ + RR +G
Sbjct: 744 MYELYGGDVSTRLLTAFTKVFTFFLQMEGFTLGVKDILVTGEADKRRRKIVEECRRDVGN 803
Query: 229 EAACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGL 288
A AL + + + +++ AY P+FR +DR+YKSLLD TN+IN+ CLP+GL
Sbjct: 804 SAVAAALEMDEVPPHDELVEKMEHAYVKDPKFRVLLDRKYKSLLDGYTNDINKTCLPDGL 863
Query: 289 IEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSP 348
+ FP+NNLQ MV SGAKGS VNTMQISCLLGQIELEGKRP +M+SG++LPSF +E SP
Sbjct: 864 VTKFPSNNLQLMVLSGAKGSMVNTMQISCLLGQIELEGKRPPLMISGKSLPSFTSFETSP 923
Query: 349 RAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDM 408
++GGF+DGRFMTGIQPQ+FFFHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEGL+VHYD+
Sbjct: 924 KSGGFIDGRFMTGIQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSVHYDL 983
Query: 409 TVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFS-FLEDNIKWICS--------------- 452
TVRDSD S++Q LYGEDGLD+ K ++ DK + FL N I
Sbjct: 984 TVRDSDNSVVQFLYGEDGLDILKSKFFNDKFCADFLTQNAPAILRPSQLQQMKDEEGLAK 1043
Query: 453 ----YKVILNLLKKHPLSLALLL------LLTFKSSGKPNFIFS-PHRTKFTMDLLEQWY 501
K I + KK P L L +PN I S R +F LL+ W
Sbjct: 1044 VQRHEKHIRSWQKKKPAKLRSAFTHFSEELREEVEVKRPNEINSKTGRRRFDEGLLKLWK 1103
Query: 502 QLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYD 561
+ D + + YRKK+ CP P ++ ++ D ++GS+SE + Y K + + H + D
Sbjct: 1104 KADAEDKALYRKKYARCPDPSVAVYKQDLYYGSVSERTRKLIDDYAKRKPE--HKEIIAD 1161
Query: 562 MIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMM 621
++ K + +LA+PGE VG++AAQSIGEPSTQMTLNTFHFAGRG+MNVTLGIPRLREILM+
Sbjct: 1162 IMRMKTIKALASPGEPVGLIAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILML 1221
Query: 622 ATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNY 681
A+ IKTPSM+IP P + +A +L ++ +T+A++LE V I L + PE Y
Sbjct: 1222 ASSNIKTPSMDIPIKPGQ---QHQAEKLRINLNCVTLANLLESVHISTSLVLEPERAYEY 1278
Query: 682 QMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAK--RAAQGLKNMNIEQSRDQ 739
+M+F F+P +Y++ V+P +II + + F+K+L +I K +A + K + I+ ++D
Sbjct: 1279 EMRFQFLPREVYKEDYGVRPKQIIKYMHQTFIKQLIRSILKVSKAKRTTKIVVIDDNKDA 1338
Query: 740 MEDDVEDDEGEGAEGA--GAALGRVDVSSDEERDEEDAVQSHKKVN-------------Q 784
+D ++D GA GA + D +K + Q
Sbjct: 1339 DREDNDNDLDNDEAGAPKGADNDDDSSDDGGDDDATGVKLKQRKTDEKDYDDPDDVDELQ 1398
Query: 785 EEDNDFEEPEDEERMSEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDK 844
+ + D E D + E+ +D + G+ +E K + N+ +V Y+YDK
Sbjct: 1399 DANADDAEASDVDD-DEKGQDSKENADGDDKSVE---------KLLCNE--MVKGYTYDK 1446
Query: 845 KNHMWCKLLFLPSNLFEEKE------------------------------SKHLLKTDGI 874
++H+WC++ S +++ + + LLKTDGI
Sbjct: 1447 ESHLWCQVKLNLSVRYQKPDLTSIIRELAGKSVVHHVQHIKRAIIYKGGNDEQLLKTDGI 1506
Query: 875 NVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSL 934
N+ + QY +LDLN+LY NDIH +A TYGIEAA++VI++EV NVF VYGI VD RHLSL
Sbjct: 1507 NIGEMFQYNKILDLNRLYSNDIHAIARTYGIEAASQVIVKEVSNVFKVYGITVDRRHLSL 1566
Query: 935 VADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLG 994
+ADYMT GT+ ++R G+ + S +Q+M+FE L+ +R A+ GR+D L +PS+R+M+G
Sbjct: 1567 IADYMTFDGTFQPLSRKGMEHSSSPLQQMSFESSLQFLRSAAGFGRQDELNSPSSRLMVG 1626
Query: 995 QECRQGTGLFQL 1006
R GTG F+L
Sbjct: 1627 LPVRNGTGAFEL 1638
>gi|380020146|ref|XP_003693956.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
RPA1-like [Apis florea]
Length = 1706
Score = 841 bits (2172), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/1111 (42%), Positives = 684/1111 (61%), Gaps = 109/1111 (9%)
Query: 2 DGWTQNASH----FLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLT 57
DG NA H ++E + NVS+QYLVPKDG+PLSGLIQDH+ISG +L++R TF +
Sbjct: 586 DGDEINAHHPQNELARSEGYNIANVSNQYLVPKDGTPLSGLIQDHIISGVRLTVRGTFFS 645
Query: 58 RAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVI----------INLTPKD 107
R +YM LVY AL + I LPP+I KP+ LW+GKQ++STVI INLT
Sbjct: 646 REDYMQLVYAALSTIQDNIILLPPSIIKPIALWSGKQIISTVIINIIPPNQARINLTASA 705
Query: 108 KVIIRHGELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLV 167
K+ ++ ++ + T++ + + + V IR+GELL G+LDK +G+T +GLV
Sbjct: 706 KINVKQWQIEK---TRHWKCGTEFSNPNTMSEAEVIIRNGELLCGVLDKTHYGATPFGLV 762
Query: 168 HAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLG 227
H +++ +G + LLS KLF LQR GFTLG+ DIL+ ++ D+KR +II+ R++G
Sbjct: 763 HCIFELYGGTCSAKLLSAFGKLFQAALQRNGFTLGIEDILLLKKADKKRKEIISNCRKIG 822
Query: 228 TEAACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEG 287
+ L LP DT +I++S+++E+Y + P+FR Q+DR+YKS LD TN+IN++CLP G
Sbjct: 823 ENIQKSVLELPNDTPMDIVTSKMEESYWNDPKFRTQVDRKYKSALDIYTNDINKICLPAG 882
Query: 288 LIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVS 347
L++ FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEGKRP +M+SG++LPSF Y+ +
Sbjct: 883 LLKKFPDNNLQLMVQSGAKGSTVNTMQISCLLGQIELEGKRPPLMISGKSLPSFPAYDPT 942
Query: 348 PRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYD 407
PRAGGF+DGRFMTGI+PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEGL ++YD
Sbjct: 943 PRAGGFIDGRFMTGIKPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLVINYD 1002
Query: 408 MTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNL-------- 459
TVRDSD SL+Q+ YGEDGLD+ ++L +Q FL DN I + ++I NL
Sbjct: 1003 STVRDSDGSLVQIYYGEDGLDIPGSRFLKKEQLXFLIDNKNAIINEEMIKNLKEDSDTDK 1062
Query: 460 ------------------LKKH---PLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLE 498
L+K P + + + K+S R+K + +
Sbjct: 1063 ILKLVKKIKKWENKNGNALQKKRISPFTRFSMENMNIKNSKYKEIDKQSGRSKAAVSYMR 1122
Query: 499 QWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDK 558
+W + ++ +K + CP P++S ++ D FG +SE L + + +Y ++ + K
Sbjct: 1123 KWIRTTEEDKKWIYNECIKCPDPVMSKYRQDIDFGVLSERLENLIDEYLTNKSKNFIIRK 1182
Query: 559 --FYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLR 616
D++ K + + PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVTLGIPRLR
Sbjct: 1183 KDLRDLLSMKVMKVVCPPGEPVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLR 1242
Query: 617 EILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPE 676
EILMMA+K IKTPSMEIPF D+ + K++N+L +T+ +++VL+ + + +E P+
Sbjct: 1243 EILMMASKNIKTPSMEIPFRKDLKNIIKRSNKLKLKLTKCILSNVLDNIIVTRKMEQWPK 1302
Query: 677 PHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQS 736
+ Y + ++P Y+ + V+P +++ E F KE+ I K A +++E+
Sbjct: 1303 RQLVYTITINYLPHKSYKGEFCVQPHEVLKKTEEVFFKEIFKEIKKVAKITGALLHVEEE 1362
Query: 737 RDQM-EDDVEDDEGEGAEGAGAAL------GRVDVSSDEERDEED-------AVQSHKK- 781
+ + EDDV D+ E +G + L G + SSDEE ED + H++
Sbjct: 1363 KKSLYEDDVLLDQIEPDQGTESILKPQTNLGEMHESSDEEAAAEDADATLIRTISRHREN 1422
Query: 782 -------------VNQEEDNDFEEPEDEERMSEREEDDNTSNIGERFKIEFRDSTNVFVK 828
+N++ED+ E ++ R+ E++++ + E K E + ++
Sbjct: 1423 QEYEDPEEEEMEDINEKEDDIIENETEKLRIEVPEQNEDQDDDIENEKSECITNEIYNIQ 1482
Query: 829 DVVNQHNI-VH--KYSYDKKNHMWCKLLF----------LPSNL---------------- 859
N N+ VH +Y YD++ WCKL F LP+ +
Sbjct: 1483 RKKNIRNMYVHALEYDYDEEKFTWCKLTFWLPLKMLKLDLPTIIKNVANRVILWEVPCIK 1542
Query: 860 ----FEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIRE 915
F+ + +LKTDGIN+ + +Y L+LN+LY NDI+ ++ TYGIEAANRVII+E
Sbjct: 1543 RAFTFQSNNGETILKTDGINIIEMFKYDKSLNLNQLYSNDIYSISQTYGIEAANRVIIKE 1602
Query: 916 VKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQA 975
V++VF +YGI VD RHLSL+ADYMT G + ++R G+ S +Q+M+FE L ++ A
Sbjct: 1603 VRDVFKMYGITVDSRHLSLIADYMTFDGRFQPLSRKGMEEAASPLQQMSFESSLNFLKNA 1662
Query: 976 SMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
++QG+ D+L +PS+R+MLGQ C+ GTG+ L
Sbjct: 1663 ALQGKRDNLESPSSRLMLGQPCKSGTGICSL 1693
>gi|195381961|ref|XP_002049701.1| GJ20610 [Drosophila virilis]
gi|194144498|gb|EDW60894.1| GJ20610 [Drosophila virilis]
Length = 1648
Score = 838 bits (2165), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/1084 (44%), Positives = 669/1084 (61%), Gaps = 87/1084 (8%)
Query: 2 DGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLT 57
DG NA S ++EA L+NV+S YLVPKDG+PL GLIQD VISG KLS+R F
Sbjct: 568 DGDEMNAHYPQSEVARSEAYNLVNVASNYLVPKDGTPLGGLIQDQVISGVKLSIRGRFFN 627
Query: 58 RAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPK--DKVIIRHGE 115
R +Y LV+Q L L +++ LPP I KP LW+GKQVLST+IINL P + + +
Sbjct: 628 REDYQQLVFQGLSHLKGDVKLLPPAIQKPAMLWSGKQVLSTIIINLIPDGYEHINLDSFA 687
Query: 116 LLSG----ILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVW 171
+ G + + L + ++ V IR GELL G+LDK+Q+G+T +GL+H ++
Sbjct: 688 KIGGKNWNVAKPRTPLCGSNPLEQELSESQVQIRKGELLVGVLDKQQYGATTFGLIHCMY 747
Query: 172 DTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAA 231
+ +G + + LL+ K+FT +LQ GFTLGV+DILV E DR+R KII + R +G A
Sbjct: 748 ELYGGDVSTRLLTAFTKVFTFFLQLEGFTLGVKDILVTDEADRRRRKIIRECRDVGNSAV 807
Query: 232 CNALGLPLDTDP-EIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIE 290
AL L D P ++++ Q++ AY +FR +DR+YKSLLD TN+IN+ CLP GLI
Sbjct: 808 AAALELE-DVPPHDVLAEQMEAAYVKDSKFRVLLDRKYKSLLDGYTNDINKTCLPGGLIT 866
Query: 291 PFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRA 350
FP+NNLQ MV SGAKGS VNTMQISCLLGQIELEGKRP +M+SG++LPSF +E SP++
Sbjct: 867 KFPSNNLQLMVLSGAKGSMVNTMQISCLLGQIELEGKRPPLMISGKSLPSFTSFETSPKS 926
Query: 351 GGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTV 410
GGF+DGRFMTGIQPQ+FFFHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEGL+VHYD+TV
Sbjct: 927 GGFIDGRFMTGIQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSVHYDLTV 986
Query: 411 RDSDLSLIQVLYGEDGLDVTKRQYLTDKQFS-FLEDNIKWI-------------CSYKV- 455
RDSD S++Q LYGEDGLD+ K ++ K + FL N K + C KV
Sbjct: 987 RDSDNSVVQFLYGEDGLDILKSKFFNGKFCADFLAQNAKAVLRPSQLQLMKDEECLAKVL 1046
Query: 456 -----ILNLLKKHPLSLALLL------LLTFKSSGKPNFIFS-PHRTKFTMDLLEQWYQL 503
I + KK P L L +PN I + R +F LL+ W +
Sbjct: 1047 RHEKHIRSWQKKQPAKLHAAFTHFSEELRNEVEVKRPNEINAKTGRRRFDEGLLKLWKKA 1106
Query: 504 DDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMI 563
D + + YRKK+ CP P ++ ++ D ++G++SE + Y + D++
Sbjct: 1107 DAEDKALYRKKYARCPDPTVAVYKQDNYYGAVSERTRQLIDDYALKHPSQKQI--IADIM 1164
Query: 564 FYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMAT 623
K++ +LA+PGE VG++AAQSIGEPSTQMTLNTFHFAGRG+MNVTLGIPRLREILM+A+
Sbjct: 1165 HMKSIKALASPGEPVGLIAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMLAS 1224
Query: 624 KAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQM 683
IKTPSM+IP P + A +L S+ +T+A +LE V I L + PE Y +
Sbjct: 1225 SNIKTPSMDIPIKPGQ---QHNAEKLRISLNCVTLASLLESVHISTSLTMEPERAYVYDL 1281
Query: 684 KFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAK--RAAQGLKNMNIEQSRD--Q 739
F F+P Y++ SV+P +II + ++ + K+L AI K A + K + +++ ++
Sbjct: 1282 HFKFLPRENYKEDYSVRPKRIIKYMQQTYFKQLIRAIIKVSNAKKTSKIVVVDEKKESGN 1341
Query: 740 MEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHK-KVNQEEDNDFEEPEDEER 798
+D+ D E + A+ G + + + +D K K + ++ D+++P+D E
Sbjct: 1342 KQDEDNDLELDAADDVGTQKAQDNDDDSSDDGGDDDATGIKLKQRKTDEKDYDDPDDVEE 1401
Query: 799 MSEREEDDNTSNIGERFKIEFRDSTNVFVKD------VVNQHNIVHKYSYDKKNHMWCKL 852
+ + +D+ + + F E + N V D + NQ +V Y+YDK++H+WC++
Sbjct: 1402 IIDANDDEEEPDEEDAFGNEPANDENAEVDDKSVEKLLSNQ--MVQDYTYDKEHHLWCRV 1459
Query: 853 LF--------------------------LP----SNLFEEKESKHLLKTDGINVNFISQY 882
+P + +++ + + LLKTDGIN+ + Q+
Sbjct: 1460 KLNLSVRYQKPDLTSIIRELAAKSIVHQVPHIKRAIIYKGNDDEQLLKTDGINIGEMFQH 1519
Query: 883 RHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHS 942
+LDLN+LY NDIH +A TYGIEAAN+VI++EV NVF VYGI VD RHLSL+ADYMT
Sbjct: 1520 NKILDLNRLYSNDIHAIARTYGIEAANQVIVKEVSNVFKVYGITVDRRHLSLIADYMTFD 1579
Query: 943 GTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTG 1002
GT+ ++R G+ + S +Q+M+FE L+ +R A+ GR D L +PS+R+M+G R GTG
Sbjct: 1580 GTFQPLSRKGMEHSSSPLQQMSFESSLQFLRNAAGFGRPDELNSPSSRLMVGLPVRNGTG 1639
Query: 1003 LFQL 1006
F+L
Sbjct: 1640 AFEL 1643
>gi|328784193|ref|XP_001121092.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Apis
mellifera]
Length = 1708
Score = 835 bits (2158), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/1112 (42%), Positives = 686/1112 (61%), Gaps = 110/1112 (9%)
Query: 2 DGWTQNASH----FLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLT 57
DG NA H ++E + NVS+QYLVPKDG+PLSGLIQDH+ISG +L++R TF +
Sbjct: 586 DGDEINAHHPQNELARSEGYNIANVSNQYLVPKDGTPLSGLIQDHIISGVRLTVRGTFFS 645
Query: 58 RAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVI----------INLTPKD 107
R +YM LVY AL + I LPP+I KP+ LW+GKQ++STVI INLT
Sbjct: 646 REDYMQLVYAALSTIQDNIILLPPSIIKPIALWSGKQIISTVIINIIPPNQARINLTANA 705
Query: 108 KVIIRHGELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLV 167
K+ ++ ++ + T++ + + + V IR+GELL G+LDK +G+T +GLV
Sbjct: 706 KINVKQWQIEK---TRHWKCGTEFSNPNTMSEAEVIIRNGELLCGVLDKTHYGATPFGLV 762
Query: 168 HAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLG 227
H +++ +G + LLS KLF LQR GFTLG+ DIL+ ++ D+KR +II+ R++G
Sbjct: 763 HCIFELYGGTCSSKLLSAFGKLFQAALQRNGFTLGIEDILLLKKADKKRKEIISNCRKIG 822
Query: 228 TEAACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEG 287
+ L LP DT I++S+++E+Y + P+FRAQ+DR+YK+ LD TN+IN++CLP G
Sbjct: 823 ENIQKSVLELPNDTPMNIVTSKMEESYWNDPKFRAQVDRKYKTALDIYTNDINKICLPAG 882
Query: 288 LIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVS 347
L++ FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEGKRP +M+SG++LPSF Y+ +
Sbjct: 883 LLKKFPDNNLQLMVQSGAKGSTVNTMQISCLLGQIELEGKRPPLMISGKSLPSFPAYDPT 942
Query: 348 PRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYD 407
PRAGGF+DGRFMTGI+PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEGL ++YD
Sbjct: 943 PRAGGFIDGRFMTGIKPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLVINYD 1002
Query: 408 MTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVIL---------- 457
TVRDSD SL+Q+ YGEDGLD+ ++L +Q +FL DN I + ++I
Sbjct: 1003 STVRDSDGSLVQIYYGEDGLDIPGSRFLKKEQLNFLIDNKNAIINEEMIKKLKEDSDTDK 1062
Query: 458 ----------------NLLKKH---PLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLE 498
N L+K P + + + KSS R+K + +
Sbjct: 1063 ILKLVKKIKKWESKNGNTLQKKRISPFTRFSMENMNIKSSKYKEIDKQSGRSKAAVSYMR 1122
Query: 499 QWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDK 558
+W + ++ +K K CP P++S ++ D FG +SE L + + +Y ++ + K
Sbjct: 1123 KWIRTTEEDKKWIYNKCIRCPDPVMSKYRQDIDFGVLSERLENLIDEYLTNKSKNFIIRK 1182
Query: 559 --FYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLR 616
D++ K + + PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVTLGIPRLR
Sbjct: 1183 KDLRDLLSMKVMKVVCPPGEPVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLR 1242
Query: 617 EILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPE 676
EILMMA+K IKTPSMEIPF D+ + K++N+L +T+ +++VL+ + + +E P+
Sbjct: 1243 EILMMASKNIKTPSMEIPFRKDLKNVIKRSNKLKLKLTKCILSNVLDNIIVNRKMEQWPK 1302
Query: 677 PHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQS 736
+ Y + ++P Y+ + V+P +I+ E F KE+ I K A +++E+
Sbjct: 1303 RQLIYTITINYLPHKSYKGEFCVQPHEILKKTEEIFFKEIFKEIKKVAKITGALLHVEEE 1362
Query: 737 RDQM-EDDVEDDEGEGAEGAGAAL------GRVDVSSDEERDEEDAVQSH-KKVNQEEDN 788
+ + EDDV D+ E +G + L G + SSDEE EDA + + +++ +N
Sbjct: 1363 KKSIYEDDVLLDQIEPDQGTESILKPQTNLGEMHESSDEEAAAEDADATLIRTISRHREN 1422
Query: 789 DFEEPEDEERMSE--REEDDNTSNIGERFKIEFRDS-------------TNVFVKDVVNQ 833
E +EE M + +EDD N E+ +IE ++ + ++ N
Sbjct: 1423 QEYEDPEEEEMEDINEKEDDIIENETEKLRIEVQEQKEDEDDDDIEKEKSEYITNEIYNI 1482
Query: 834 H---NIVH------KYSYDKKNHMWCKLLF----------LPSNL--------------- 859
H NI + +Y YD++ WCKL F LP+ +
Sbjct: 1483 HRKKNIKNMYVNALEYDYDEEKFSWCKLTFWLPLKMLKLDLPTIIKNVANRVILWEVPCI 1542
Query: 860 -----FEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIR 914
F+ + +LKTDGIN+ + +Y L+LN+LY NDI+ ++ TYGIEAANRVII+
Sbjct: 1543 KRAFTFQNNNGETILKTDGINIIEMFKYDKSLNLNQLYSNDIYSISQTYGIEAANRVIIK 1602
Query: 915 EVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQ 974
EV++VF +YGI VD RHLSL+ADYMT G + ++R G+ + S +Q+M+FE L ++
Sbjct: 1603 EVRDVFKMYGITVDSRHLSLIADYMTFDGRFQPLSRKGMEESASPLQQMSFESSLNFLKN 1662
Query: 975 ASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
A++QG+ D+L +PS+R+MLGQ C+ GTG+ L
Sbjct: 1663 AALQGKRDNLESPSSRLMLGQPCKSGTGICSL 1694
>gi|432880189|ref|XP_004073596.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Oryzias
latipes]
Length = 1705
Score = 835 bits (2157), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/1114 (42%), Positives = 668/1114 (59%), Gaps = 113/1114 (10%)
Query: 1 MDGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA S +AEA L++ + QYLVPKDG PL+GLIQDH++SG ++++R F
Sbjct: 588 FDGDEMNAHFPQSELGRAEAYTLVSTNQQYLVPKDGKPLAGLIQDHMVSGTRMTIRGCFF 647
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKV---IIRH 113
TR +Y LV++ L ++ LPP + KP LWTGKQV+ST+++N+ P+ V +I
Sbjct: 648 TRDQYTELVFRGLTDKRGRVKLLPPAVLKPQHLWTGKQVVSTLLLNVIPEKAVPLNLIGR 707
Query: 114 GELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDT 173
++ S K + ++ D+ V IR GELL G+LDK +GS+ YGLVH ++
Sbjct: 708 SKIPSKAWIKLPPRAAPGYQPESMCDSQVVIRQGELLVGVLDKAHYGSSAYGLVHCCYEL 767
Query: 174 HGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGTEAAC 232
+G E + LL CLA+LFT YLQ GFTLGV DILV+ +++R KII +R +G++A
Sbjct: 768 YGGETSGKLLGCLARLFTAYLQLYRGFTLGVEDILVKPGANKRRRKIIESSRNVGSQALQ 827
Query: 233 NALGLPLDTDPEIISSQLQEAYASIPQFR--AQIDRQYKSLLDKVTNNINQVCLPEGLIE 290
A LP DP S+ Q+A+ + P R + D ++K + ++V N+IN+VC+P GL
Sbjct: 828 AAFNLPPGVDPADARSRWQDAHLN-PDQRDFSTADHKFKEVANQVNNDINKVCMPVGLHT 886
Query: 291 PFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRA 350
FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG+ LP F PY+ SP A
Sbjct: 887 SFPDNNLQLMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMPSGKFLPCFQPYDPSPGA 946
Query: 351 GGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTV 410
GGFV GRF+TGI+PQEFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V YD+TV
Sbjct: 947 GGFVSGRFLTGIKPQEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTV 1006
Query: 411 RDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALL 470
RDSD S++Q LYGEDGLD+ K +L KQF F+EDN + I + + ++L + L A
Sbjct: 1007 RDSDGSVVQFLYGEDGLDIPKTPFLQPKQFPFIEDNFEVIRRTQSLDSVLARLDLQTANQ 1066
Query: 471 LLLTFKSSGKPNFIFSPHRTKF---------------------------TMDLLEQWYQL 503
+ + SP R F + L+ QW+ L
Sbjct: 1067 HFAAIRRWKAKREMPSPRRGAFLLFSKKKLAKLKDSTAGADLVSTRSPAVLQLVGQWHSL 1126
Query: 504 DDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVD--KFYD 561
D+ R KY KK CP+P ++ F+PD GS+SE+ KY + R+ A VD
Sbjct: 1127 DEAGRAKYLKKASRCPEPSLNLFRPDVCLGSVSESFHSITEKYLQDRSSAQSVDTNSLRQ 1186
Query: 562 MIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMM 621
++ YK SL +PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVTLGIPRLREILM+
Sbjct: 1187 LLHYKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMV 1246
Query: 622 ATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISP-EPHMN 680
A+ IKTP M IP + K KKA L + + R+ +++VL+KV + E L++ +
Sbjct: 1247 ASSNIKTPMMSIP-VQHTKKALKKAKMLRRKLARVCLSEVLQKVDVVETLQVKHFQKFRA 1305
Query: 681 YQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQM 740
+++ F +P Y + + PS+I+ + E +F L A+ KR A+ L ++ +E +
Sbjct: 1306 FKVTFHLLPPDRYNEDKLLTPSQILHYMETRFFHLLLDAVKKRTAR-LSSIAVETRKATS 1364
Query: 741 EDDVEDDEGEGAEGA-----GAALGRVDVSSDEERD-EEDAVQSHKKVNQEEDNDFEEPE 794
D +D +G+GA G G A + D+E + + DA + +K QEE+ D+E E
Sbjct: 1365 RD--KDTDGDGAAGTSKLDDGEAEEDEKIVDDQENEGDADASDAKRKGKQEEEVDYES-E 1421
Query: 795 DEERMSEREEDDNTSNI-----------------GERFKIEFR----------DSTNVFV 827
DE+ +E EE+D+ ++E R + V
Sbjct: 1422 DEQGDNEAEENDDEGEAEVEENAEAHSTEESHPESSGMRLEARKKQKKKVTKESELQMRV 1481
Query: 828 KDVVNQHNIVHKYSYDKKNHMWCKL-LFLPSN---------------------------- 858
V++ ++ + Y +D+++ +WC++ L P N
Sbjct: 1482 NSVLDLNSAIEGYRFDQQDELWCEVDLAFPVNKVHFDLTAIVSTVAQNAVVMETRGLTRC 1541
Query: 859 LFEEKESKH-----LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVII 913
L E SK +L T+GIN++ + +Y +LDLN+LY N++H MA+TYGIE A +VI
Sbjct: 1542 LLSETTSKSGEKETVLNTEGINMHEMFKYGEILDLNRLYSNEVHAMANTYGIEVALKVIE 1601
Query: 914 REVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIR 973
+E+K+VFAVYGIEVDPRHLSLVADYM G Y +NR+ IR N S +Q+MTFE + ++
Sbjct: 1602 KEIKDVFAVYGIEVDPRHLSLVADYMCFEGVYKPLNRHAIRSNSSPLQQMTFETSYKFLK 1661
Query: 974 QASMQGREDSLRAPSARVMLGQECRQGTGLFQLR 1007
QA+M G D L +PSA +++G+ + GTGLF+L+
Sbjct: 1662 QATMLGSHDQLESPSACLVVGKVVKGGTGLFELK 1695
>gi|403303957|ref|XP_003942581.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Saimiri
boliviensis boliviensis]
Length = 1720
Score = 831 bits (2147), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/1143 (42%), Positives = 665/1143 (58%), Gaps = 151/1143 (13%)
Query: 1 MDGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA S +AEA L QYLVPKDG PL+GLIQDH++SGA ++ R F
Sbjct: 589 FDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFF 648
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL 116
TR +YM LVY+ L ++ PP+I KP PLWTGKQV+ST++IN+ P+D + +
Sbjct: 649 TREQYMELVYRGLTDKVGRVKLFPPSILKPFPLWTGKQVVSTLLINIIPEDHIPLN---- 704
Query: 117 LSG---ILDKKQFGSTQYGLV----HAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHA 169
L+G I K T + ++ ++ V IR GELL G+LDK +GS+ YGLVH
Sbjct: 705 LTGKAKITGKAWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHC 764
Query: 170 VWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGT 228
++ +G E + +L+CLA+LFT YLQ GFTLGV DILV+ + D KR +II ++ G
Sbjct: 765 CYEIYGGEISGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADVKRQQIIEESIHCGP 824
Query: 229 EAACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCLPEG 287
A AL LP + + + Q+A+ Q ID ++K ++ +N IN+ C+P G
Sbjct: 825 RAVRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFG 884
Query: 288 LIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVS 347
L FP N+LQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PYE +
Sbjct: 885 LHRQFPENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFT 944
Query: 348 PRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYD 407
PRAGGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V YD
Sbjct: 945 PRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYD 1004
Query: 408 MTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICS--------------- 452
+TVRDSD S++Q LYGEDGLDV K Q+L KQF FL N + I
Sbjct: 1005 LTVRDSDGSVVQFLYGEDGLDVPKTQFLQPKQFPFLASNYEAIMKSNHLHEVLSRADPKK 1064
Query: 453 ----YKVILNLLKKHP---------LSLALLLLLTFKS----SGKPNFIFSPHRTKFTMD 495
++ I KHP LS + + K+ SG N R+ T +
Sbjct: 1065 ALRHFRAIKKWQNKHPNTLLRRGAFLSYSQKIEAAVKALNLESGNQN-----GRSPGTQE 1119
Query: 496 LLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK---GRTD 552
+L WY+LD+ +R+KYRKK +CP P +S ++PD HF S+SE V Y++ +T+
Sbjct: 1120 MLRTWYELDEHSRRKYRKKAASCPDPSLSVWRPDIHFASVSETFETMVDDYSQEWAAQTE 1179
Query: 553 ASH------VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDM 606
S+ +++ ++ K SL PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+M
Sbjct: 1180 RSYEKSELSLERLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEM 1239
Query: 607 NVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVK 666
NVTLGIPRLREILM+A+ IKTP M +P L + + K+ L K +TR+ + +VL+K+
Sbjct: 1240 NVTLGIPRLREILMVASANIKTPMMSVPVL-NTKRALKRVKSLKKQLTRVCLGEVLQKID 1298
Query: 667 IKEWLEISPEPHMN----YQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAK 722
++E L I E N YQM+F F+P Y+ + ++P I+ E +F K L +I K
Sbjct: 1299 VQESLCI--EEKQNKFRVYQMRFQFLPHACYQQEKCLRPEDILRFMETRFFKLLMESIRK 1356
Query: 723 R--AAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGR------VDVSSDE-ERDEE 773
+ A +N+N +R + D+++ E G VD +DE + D
Sbjct: 1357 KNNKASAFRNVN---TRRATQRDLDNTEQSGRSRGEQEGDEEEEGRIVDAEADEGDADAS 1413
Query: 774 DAVQSHKKV----------------------NQEEDNDF-----EEPEDEERMSEREEDD 806
DA + K+ QEE N E PE +E M+ R E+
Sbjct: 1414 DAKRKEKQEEEVDYESEEEEEKEGEENDDEDTQEEGNAHGEGAQETPEQDEEMASRAEEA 1473
Query: 807 NTSNI--GERFKI------EFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC-------- 850
+ I +R K + ++T ++ V H+ + Y YD + +WC
Sbjct: 1474 PSLPILLTQRRKSTHSQEPQGAEATKRRIQAVREIHSFIEDYQYDTEESLWCQVTVKLPL 1533
Query: 851 -KLLFLPSNLF-------------------------EEKESKHLLKTDGINVNFISQYRH 884
K+ F S+L + E + +L T+GIN+ + +Y
Sbjct: 1534 MKINFDMSSLVVSLAHDAIVYTTRGITRCLLNETTNSKNEKELVLNTEGINLPELFKYAE 1593
Query: 885 LLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGT 944
+LDL +LY NDIH MA+TYGIEAA RVI +E+K+VFAVYGI VDPRHLSLVADYM G
Sbjct: 1594 ILDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGV 1653
Query: 945 YVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
Y +NR GI+ N S +Q+MTFE + ++QA+M G D LR+PSA +++G+ + GTGLF
Sbjct: 1654 YKPLNRFGIQSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVKGGTGLF 1713
Query: 1005 QLR 1007
+L+
Sbjct: 1714 ELK 1716
>gi|195583416|ref|XP_002081518.1| GD25674 [Drosophila simulans]
gi|194193527|gb|EDX07103.1| GD25674 [Drosophila simulans]
Length = 1642
Score = 830 bits (2144), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/1079 (43%), Positives = 662/1079 (61%), Gaps = 82/1079 (7%)
Query: 2 DGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLT 57
DG NA S +AEA L+NV+S YLVPKDG+PL GLIQDHVISG KLS+R F
Sbjct: 567 DGDEMNAHYPQSEVARAEAYNLVNVASNYLVPKDGTPLGGLIQDHVISGVKLSIRGRFFN 626
Query: 58 RAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELL 117
R +Y LV+Q L L I+ LPPTI KP L +GKQ+LST+II++ P+ I + +
Sbjct: 627 REDYQQLVFQGLSQLKKNIKLLPPTILKPALLGSGKQILSTIIIHIIPEGYERI-NLDSF 685
Query: 118 SGILDKKQ---------FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVH 168
+ I K G+ G + + ++ V IR+GELL G+LDK+Q+G+T YGL+H
Sbjct: 686 AKIAGKNWNVSRPRPAICGTNPEG--NELSESQVQIRNGELLVGVLDKQQYGATTYGLIH 743
Query: 169 AVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGT 228
+++ +G + + LL+ K+FT +LQ GFTLGV+DILV DRKR KII + R +G
Sbjct: 744 CMYELYGGDVSTLLLTAFTKVFTFFLQLEGFTLGVKDILVTDVADRKRRKIIRECRNVGN 803
Query: 229 EAACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGL 288
A AL L + + + +++ AY +FR +DR+YKS+LD TN+IN CLP GL
Sbjct: 804 SAVAAALELEDEPPHDELVEKMEAAYVKDSKFRVLLDRKYKSVLDSYTNDINSTCLPRGL 863
Query: 289 IEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSP 348
I FP+NNLQ MV SGAKGS VNTMQISCLLGQIELEGKRP +M+SG++LPSF +E SP
Sbjct: 864 ITKFPSNNLQLMVLSGAKGSMVNTMQISCLLGQIELEGKRPPLMISGKSLPSFTSFETSP 923
Query: 349 RAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDM 408
++GGF+DGRFMTGIQPQ+FFFHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEGL+VHYD+
Sbjct: 924 KSGGFIDGRFMTGIQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSVHYDL 983
Query: 409 TVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFS-FLEDNIKWICS--------------- 452
TVRDSD S++Q LYGEDGLD+ K ++ DK + FL N I
Sbjct: 984 TVRDSDNSVVQFLYGEDGLDILKSKFFNDKFCADFLTQNATAILRPTHLQLMKDEEQLAK 1043
Query: 453 ----YKVILNLLKKHPLSLALLL------LLTFKSSGKPNFIFS-PHRTKFTMDLLEQWY 501
K I + KK P L L +PN I S R +F LL+ W
Sbjct: 1044 VQRHEKHIRSWQKKKPAKLRAAFTHFSEELREEVEVKRPNEINSKTGRRRFDEGLLKLWK 1103
Query: 502 QLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYD 561
+ D + + YRKK+ CP P ++ ++ D ++GS+SE + + Y K + + D
Sbjct: 1104 KADAEDKALYRKKYARCPDPTVAVYKQDLYYGSVSERTSKLITDYAKRKPALK--ETIAD 1161
Query: 562 MIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMM 621
++ K + SLA PGE VG++AAQSIGEPSTQMTLNTFHFAGRG+MNVTLGIPRLREILM+
Sbjct: 1162 IMRVKTIKSLAAPGEPVGLIAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILML 1221
Query: 622 ATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNY 681
A+ IKTPSM+IP P + +A +L ++ +T+A++LE V + L + PE Y
Sbjct: 1222 ASSNIKTPSMDIPIKPGQ---QHQAEKLRINLNSVTLANLLEYVNVSTGLTLDPERSYEY 1278
Query: 682 QMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAK--RAAQGLKNMNIEQSRD- 738
M+F F+P +Y++ V+P II + + F K+L AI K A++ K + I+ +D
Sbjct: 1279 DMRFQFLPREVYKEDYGVRPKHIIKYMHQTFFKQLIRAILKVSNASKTTKIVVIDDKKDA 1338
Query: 739 -QMEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEE 797
+ ED+ D+ E G A +++ D +K ++++ +D ++ E+
Sbjct: 1339 EKDEDNDLDNADEVGRSKGKANDDDSSDDNDDDDATGVKLKQRKTDEKDYDDPDDVEELH 1398
Query: 798 RMSEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPS 857
++ +++ + E+ + + + + +++V YSYDK+NH+WC++ S
Sbjct: 1399 DANDDDDEAEDEDDEEKGLDGNDNDGDDKAVERLLSNDMVKGYSYDKENHLWCQVKLNLS 1458
Query: 858 N------------------------------LFEEKESKHLLKTDGINVNFISQYRHLLD 887
+++ + + LLKTDGIN+ + Q+ +LD
Sbjct: 1459 VRYQKPDLTSIIRELAGKSVVHQVQHIKRAIIYKGTDDEQLLKTDGINIGEMFQHNKILD 1518
Query: 888 LNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVA 947
LN+LY NDIH +A TYGIEAA++VI++EV NVF VYGI VD RHLSL+ADYMT GT+
Sbjct: 1519 LNRLYSNDIHAIARTYGIEAASQVIVKEVSNVFKVYGITVDRRHLSLIADYMTFDGTFQP 1578
Query: 948 MNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
++R G+ + S +Q+M+FE L+ ++ A+ GR D L +PS+R+M+G R GTG F+L
Sbjct: 1579 LSRKGMEHSSSPLQQMSFESSLQFLKSAAGFGRSDELSSPSSRLMVGLPVRNGTGAFEL 1637
>gi|444515209|gb|ELV10798.1| DNA-directed RNA polymerase I subunit RPA1 [Tupaia chinensis]
Length = 1683
Score = 828 bits (2139), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/1127 (41%), Positives = 647/1127 (57%), Gaps = 127/1127 (11%)
Query: 1 MDGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA S +AEA L QYLVPKDG PL+GLIQDH++SGA +++R F
Sbjct: 560 FDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTIRGCFF 619
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR--HG 114
TR +YM LVY+ L ++ PP I KP LWTGKQV+ST++IN+ P+D + +
Sbjct: 620 TREQYMELVYRGLTDKVGRVKLFPPAILKPFALWTGKQVVSTLLINIIPEDHIPLNLTGK 679
Query: 115 ELLSGILDKKQFGSTQYGL-VHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDT 173
+SG K G +++ ++ V IR GELL G+LDK +GS+ YGLVH ++
Sbjct: 680 AKISGKAWVKDAPRPVPGFDPNSMCESQVVIRKGELLCGVLDKAHYGSSAYGLVHCCYEI 739
Query: 174 HGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGTEAAC 232
+G E + +L+CLA+LFT YLQ GFTLGV DILV+ + D +R +II ++ G A
Sbjct: 740 YGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKSKADVRRHRIIEESTLCGPRAVR 799
Query: 233 NALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCLPEGLIEP 291
AL LP + + + Q+A+ Q ID ++K ++ +N IN+ C+P GL
Sbjct: 800 AALNLPEAASCDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQ 859
Query: 292 FPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAG 351
FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PYE +PRAG
Sbjct: 860 FPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAG 919
Query: 352 GFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVR 411
GFV GRF+TGI P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V YD+TVR
Sbjct: 920 GFVTGRFLTGINPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVR 979
Query: 412 DSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICS------------------- 452
DSD S++Q LYGEDGLD+ K Q+L KQF FL N + I
Sbjct: 980 DSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIVKSKHLHEVLSRADPQKALHH 1039
Query: 453 YKVILNLLKKHPLSL--------------ALLLLLTFKSSGKPNFIFSPHRTKFTMDLLE 498
++ I +HP +L A + L + + R+ T +L
Sbjct: 1040 FRAIKKWQSRHPSTLLRRGAFLSYSQKVQAAVRALNLEGENRNG------RSPETQQMLR 1093
Query: 499 QWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK---GRTDASH 555
WY+LD ++++KY+KK CP P +ST +PD + GS+SE V Y++ + + S+
Sbjct: 1094 MWYELDGQSQRKYQKKAAPCPDPCLSTCRPDIYLGSVSETFERKVDDYSQEWAAQAEQSY 1153
Query: 556 ------VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVT 609
+D+ ++ K SL +PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVT
Sbjct: 1154 EKSELSLDRLKTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVT 1213
Query: 610 LGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKE 669
LGIPRLREILM+A+ IKTP M +P L + K ++ L K +TR+ + +VLEK+ ++E
Sbjct: 1214 LGIPRLREILMVASANIKTPMMSVPVL-NTRKALRRVKSLRKQLTRVCLGEVLEKIDVQE 1272
Query: 670 WLEISP--EPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKR--AA 725
+ + YQ+ F F+P Y+ + ++P I+ E +F K L +I K+ A
Sbjct: 1273 SFCMGEKQDKFRVYQLHFQFLPHAYYQQEKCLRPEDILHFMETRFFKLLMESIRKKNSKA 1332
Query: 726 QGLKNMNIEQSRDQMEDDVEDD------------------EGEGAEG-AGAALGRVDVSS 766
+N+N ++ Q D+ E+ + E EG A A+ +
Sbjct: 1333 SAFRNVNTRRATQQDLDNAEESGRIRGEQEGGEEEEGHIVDAEAEEGDADASDAKRKEKQ 1392
Query: 767 DEERDEEDAVQSHKKVNQEEDNDFEE------------PEDEERMSEREEDDNTSNIGER 814
+EE D E A + + +D D +E PE EE M E+D+
Sbjct: 1393 EEEVDYESAEEEETVGEENDDEDGQEEGSVRGEGAHKAPEQEEDMGSGPEEDSPQKPSRI 1452
Query: 815 FKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKL---------------------- 852
+ ++ V+ V H + Y YD + +WC++
Sbjct: 1453 RGPQGAEAVERRVQAVCEAHPYIAHYQYDTEESLWCEVTVKLPLMKINFDMTSLVVSLAH 1512
Query: 853 ------------LFLPSNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMA 900
L + E + +L T+GIN+ + +Y +LDL +LY NDIH MA
Sbjct: 1513 STVVYATKGITRCLLNETTNSKNEKEFVLNTEGINLPELFKYAEVLDLRRLYSNDIHAMA 1572
Query: 901 STYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFI 960
+TYGIEAA RVI +E+K+VFAVYGI VDPRHLSLVADYM G Y +NR GIR N S +
Sbjct: 1573 NTYGIEAALRVIEKEIKDVFAVYGIVVDPRHLSLVADYMCFEGVYKPLNRFGIRSNSSPL 1632
Query: 961 QKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLR 1007
Q+MTFE + ++QA+M G D LR+PSA +++G+ + GTGLF+L+
Sbjct: 1633 QQMTFETSFQFLKQATMMGSHDELRSPSACLVVGKVVKGGTGLFELK 1679
>gi|291386403|ref|XP_002709704.1| PREDICTED: DNA-directed RNA polymerase I A isoform 2 [Oryctolagus
cuniculus]
Length = 1720
Score = 827 bits (2135), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/1130 (42%), Positives = 660/1130 (58%), Gaps = 132/1130 (11%)
Query: 1 MDGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA S +AEA L QYLVPKDG PL+GLIQDH++SGA +++R F
Sbjct: 596 FDGDEMNAHFPQSELGRAEACVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFF 655
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL 116
TR +YM LVY+ L ++ LPP I KP PLWTGKQV+ST++IN+ P+D + +
Sbjct: 656 TREQYMELVYRGLTDKVGRVKLLPPAILKPFPLWTGKQVVSTLLINIIPEDHIPLN---- 711
Query: 117 LSG---ILDKKQFGSTQYGLVH----AVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHA 169
LSG I K T + + ++ ++ V I+ GELL G+LDK +GS+ +GLVH
Sbjct: 712 LSGKAKISGKAWVKETPRPVPNFDPNSMCESQVIIKEGELLCGVLDKAHYGSSAFGLVHC 771
Query: 170 VWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGT 228
++ +G E + +L+CLA+LFT YLQ GFTLGV DILV+ + D +R +II ++ + G+
Sbjct: 772 CYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADVRRHRIIEESTQCGS 831
Query: 229 EAACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCLPEG 287
A AL LP + I + Q+A+ Q ID ++K ++ +N IN+ C+P G
Sbjct: 832 RAVRAALNLPEAASCDEIREKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFG 891
Query: 288 LIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVS 347
L FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PYE +
Sbjct: 892 LHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFT 951
Query: 348 PRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYD 407
PRAGGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V YD
Sbjct: 952 PRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYD 1011
Query: 408 MTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSL 467
+TVRDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I K + +L K
Sbjct: 1012 LTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVITKSKHLHEVLAKADPKK 1071
Query: 468 ALL---------------LLLT---FKSSGKPNFIFSPH---------RTKFTMDLLEQW 500
AL LL T + S K R+ T +L+ W
Sbjct: 1072 ALRHFRAIKKWQSKHSGPLLRTGAFLRYSQKIQAAVKAQNLEGKNQNGRSPETQQMLQMW 1131
Query: 501 YQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK---GRTDASH-- 555
Y+LD+++R+KY+KK CP P +S ++PD + GS+SE V Y++ + + S+
Sbjct: 1132 YELDEQSRRKYQKKAAPCPDPSLSVWRPDIYLGSVSETFEKKVDDYSQEWAAQAETSYEK 1191
Query: 556 ----VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLG 611
+D+ ++ K SL +PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVTLG
Sbjct: 1192 SELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLG 1251
Query: 612 IPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWL 671
IPRLREILM+A+ IKTP M +P L + K K+ L K +TR+ + +VL+KV ++E
Sbjct: 1252 IPRLREILMVASANIKTPMMSVPVL-NTKKALKRVKSLKKQLTRVCLGEVLQKVDVQESF 1310
Query: 672 EISPEPH--MNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKR--AAQG 727
+ + + Y+++F F+P Y+ + ++P I+ E +F K L +I K+ A
Sbjct: 1311 CMGEKQNKFRVYEVRFQFLPHAYYQQEKCLRPDDILHFMETRFFKLLMESIKKKNSKASA 1370
Query: 728 LKNMNIEQSRDQMEDDVEDDEGEGAE---------------GAGAALGRVDVSSDEERDE 772
+++N +R + D++D E G A A G D S + R +
Sbjct: 1371 FRSVN---TRRATQRDLDDSEESGRNRGEQEGDEEEDGHIVDAEAEEGDADASDAKRRKK 1427
Query: 773 E---------------------DAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNTSNI 811
+ + Q E + +EP+++E + EDD+
Sbjct: 1428 QEEEVDYESEEEEEKEAEENEDEDAQEEGNFQSEGAHKAQEPDNDE-VGSGAEDDSPQKT 1486
Query: 812 GERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKL-LFLP--------SNLF-- 860
+ +S V+ V H V Y YD + +WC++ L LP S+L
Sbjct: 1487 PHSQEPRGAESVERRVQAVREAHAFVEDYQYDTEESLWCQVTLKLPLMKINFDMSSLVVS 1546
Query: 861 -----------------------EEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIH 897
+ E + +L T+GIN+ + +Y +LDL +LY NDIH
Sbjct: 1547 LAHSAVVYTTKGITRCLLNETTNRKNEKELVLSTEGINLPELFKYAEILDLRRLYSNDIH 1606
Query: 898 YMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNP 957
MA+TYGIEAA RVI +E+K+VFAVYGI VDPRHLSLVADYM G Y +NR GIR N
Sbjct: 1607 AMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIRSNS 1666
Query: 958 SFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLR 1007
S +Q+MTFE + ++QA+M G D LR+PSA +++G+ + GTGLF+L+
Sbjct: 1667 SPLQQMTFETSFQFLKQATMMGSHDELRSPSACLVVGKVVKGGTGLFELK 1716
>gi|291386401|ref|XP_002709703.1| PREDICTED: DNA-directed RNA polymerase I A isoform 1 [Oryctolagus
cuniculus]
Length = 1713
Score = 826 bits (2133), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/1130 (42%), Positives = 660/1130 (58%), Gaps = 132/1130 (11%)
Query: 1 MDGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA S +AEA L QYLVPKDG PL+GLIQDH++SGA +++R F
Sbjct: 589 FDGDEMNAHFPQSELGRAEACVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFF 648
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL 116
TR +YM LVY+ L ++ LPP I KP PLWTGKQV+ST++IN+ P+D + +
Sbjct: 649 TREQYMELVYRGLTDKVGRVKLLPPAILKPFPLWTGKQVVSTLLINIIPEDHIPLN---- 704
Query: 117 LSG---ILDKKQFGSTQYGLVH----AVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHA 169
LSG I K T + + ++ ++ V I+ GELL G+LDK +GS+ +GLVH
Sbjct: 705 LSGKAKISGKAWVKETPRPVPNFDPNSMCESQVIIKEGELLCGVLDKAHYGSSAFGLVHC 764
Query: 170 VWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGT 228
++ +G E + +L+CLA+LFT YLQ GFTLGV DILV+ + D +R +II ++ + G+
Sbjct: 765 CYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADVRRHRIIEESTQCGS 824
Query: 229 EAACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCLPEG 287
A AL LP + I + Q+A+ Q ID ++K ++ +N IN+ C+P G
Sbjct: 825 RAVRAALNLPEAASCDEIREKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFG 884
Query: 288 LIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVS 347
L FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PYE +
Sbjct: 885 LHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFT 944
Query: 348 PRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYD 407
PRAGGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V YD
Sbjct: 945 PRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYD 1004
Query: 408 MTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSL 467
+TVRDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I K + +L K
Sbjct: 1005 LTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVITKSKHLHEVLAKADPKK 1064
Query: 468 ALL---------------LLLT---FKSSGKPNFIFSPH---------RTKFTMDLLEQW 500
AL LL T + S K R+ T +L+ W
Sbjct: 1065 ALRHFRAIKKWQSKHSGPLLRTGAFLRYSQKIQAAVKAQNLEGKNQNGRSPETQQMLQMW 1124
Query: 501 YQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK---GRTDASH-- 555
Y+LD+++R+KY+KK CP P +S ++PD + GS+SE V Y++ + + S+
Sbjct: 1125 YELDEQSRRKYQKKAAPCPDPSLSVWRPDIYLGSVSETFEKKVDDYSQEWAAQAETSYEK 1184
Query: 556 ----VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLG 611
+D+ ++ K SL +PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVTLG
Sbjct: 1185 SELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLG 1244
Query: 612 IPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWL 671
IPRLREILM+A+ IKTP M +P L + K K+ L K +TR+ + +VL+KV ++E
Sbjct: 1245 IPRLREILMVASANIKTPMMSVPVL-NTKKALKRVKSLKKQLTRVCLGEVLQKVDVQESF 1303
Query: 672 EISPEPH--MNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKR--AAQG 727
+ + + Y+++F F+P Y+ + ++P I+ E +F K L +I K+ A
Sbjct: 1304 CMGEKQNKFRVYEVRFQFLPHAYYQQEKCLRPDDILHFMETRFFKLLMESIKKKNSKASA 1363
Query: 728 LKNMNIEQSRDQMEDDVEDDEGEGAE---------------GAGAALGRVDVSSDEERDE 772
+++N +R + D++D E G A A G D S + R +
Sbjct: 1364 FRSVN---TRRATQRDLDDSEESGRNRGEQEGDEEEDGHIVDAEAEEGDADASDAKRRKK 1420
Query: 773 E---------------------DAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNTSNI 811
+ + Q E + +EP+++E + EDD+
Sbjct: 1421 QEEEVDYESEEEEEKEAEENEDEDAQEEGNFQSEGAHKAQEPDNDE-VGSGAEDDSPQKT 1479
Query: 812 GERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKL-LFLP--------SNLF-- 860
+ +S V+ V H V Y YD + +WC++ L LP S+L
Sbjct: 1480 PHSQEPRGAESVERRVQAVREAHAFVEDYQYDTEESLWCQVTLKLPLMKINFDMSSLVVS 1539
Query: 861 -----------------------EEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIH 897
+ E + +L T+GIN+ + +Y +LDL +LY NDIH
Sbjct: 1540 LAHSAVVYTTKGITRCLLNETTNRKNEKELVLSTEGINLPELFKYAEILDLRRLYSNDIH 1599
Query: 898 YMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNP 957
MA+TYGIEAA RVI +E+K+VFAVYGI VDPRHLSLVADYM G Y +NR GIR N
Sbjct: 1600 AMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIRSNS 1659
Query: 958 SFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLR 1007
S +Q+MTFE + ++QA+M G D LR+PSA +++G+ + GTGLF+L+
Sbjct: 1660 SPLQQMTFETSFQFLKQATMMGSHDELRSPSACLVVGKVVKGGTGLFELK 1709
>gi|383417301|gb|AFH31864.1| DNA-directed RNA polymerase I subunit RPA1 [Macaca mulatta]
Length = 1720
Score = 824 bits (2129), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/1143 (42%), Positives = 657/1143 (57%), Gaps = 151/1143 (13%)
Query: 1 MDGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA S +AEA L QYLVPKDG PL+GLIQDH++SGA ++ R F
Sbjct: 589 FDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFF 648
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL 116
TR +YM LVY+ L ++ PP+I KP PLWTGKQVLST++IN+ P+D + +
Sbjct: 649 TREQYMELVYRGLTDKVGRVKLFPPSILKPFPLWTGKQVLSTLLINIIPEDHIPLN---- 704
Query: 117 LSG---ILDKKQFGSTQYGLV----HAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHA 169
LSG I K T + ++ ++ V IR GELL G+LDK +GS+ YGLVH
Sbjct: 705 LSGKAKITGKAWVKETPRSVPGFNPDSMCESQVVIREGELLCGVLDKAHYGSSAYGLVHC 764
Query: 170 VWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGT 228
++ +G E + +L+CLA+LFT YLQ GFTLGV DILV+ + D KR +II ++ G
Sbjct: 765 CYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGP 824
Query: 229 EAACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCLPEG 287
A AL LP T + + + Q+A+ Q ID ++K ++ +N IN+ C+P G
Sbjct: 825 RAVRAALNLPEATSYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFG 884
Query: 288 LIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVS 347
L FP N+LQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PYE +
Sbjct: 885 LHRQFPENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFT 944
Query: 348 PRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYD 407
PRAGGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V YD
Sbjct: 945 PRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYD 1004
Query: 408 MTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICS--------------- 452
+TVRDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I
Sbjct: 1005 LTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHLHEVLSRADPKK 1064
Query: 453 ----YKVILNLLKKHPLSL--------------ALLLLLTFKSSGKPNFIFSPHRTKFTM 494
++ I KHP +L A + L +S + R+ T
Sbjct: 1065 ALRHFRAIKKWQSKHPNTLLRRGAFLSYSQKIQAAVKALNLESENRNG------RSPGTQ 1118
Query: 495 DLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK---GRT 551
++L WY+LD+++R+KY+KK CP P +S ++PD +F S+SE V Y++ +T
Sbjct: 1119 EMLRMWYELDEESRRKYQKKAATCPDPSLSVWRPDIYFASVSETFETKVDDYSQEWAAQT 1178
Query: 552 DASH------VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGD 605
+ S+ +D+ ++ K SL PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+
Sbjct: 1179 EKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGE 1238
Query: 606 MNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKV 665
MNVTLGIPRLREILM+A+ IKTP M +P L + K K+ L K +TR+ + +VL+K+
Sbjct: 1239 MNVTLGIPRLREILMVASANIKTPMMSVPVL-NTKKALKRVKSLKKQLTRVCLGEVLQKI 1297
Query: 666 KIKE--WLEISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKR 723
++E +E YQ++F F+P Y+ + ++P I+ E +F K L +I K+
Sbjct: 1298 DVQESFCMEEKQNKFRVYQLRFQFLPHAYYQQEKCLRPEDILRFMETRFFKLLMESIKKK 1357
Query: 724 --AAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGR-------VDVSSDE-ERDEE 773
A +N+N +R + D+ D+ GE G G VD ++E + D
Sbjct: 1358 NNKASAFRNVN---TRRATQRDL-DNAGESGRSRGEQEGDEEDEGHIVDAEAEEGDADAS 1413
Query: 774 DAVQSHKKV----------------------NQEEDNDFEE------PEDEERMSEREED 805
DA + K+ QEE N E DEE S EED
Sbjct: 1414 DAKRKEKQEEEVDYESEEEEEREGEENNDEDTQEERNPHREGARETQERDEEVGSGTEED 1473
Query: 806 DNTSNIGERFK-------IEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKL------ 852
+ + + + ++ V+ V H+ + Y YD + +WC++
Sbjct: 1474 PALPALLTQPRKPTHSQEPQGPEAVERRVQAVREIHSFIDDYQYDTEGSLWCQVTVKLPL 1533
Query: 853 ----------------------------LFLPSNLFEEKESKHLLKTDGINVNFISQYRH 884
L + E + +L T+GIN+ + +Y
Sbjct: 1534 MKINFDMGSLVVSLAHGAVIYATKGITRCLLNETTNNKNEKELVLNTEGINLPELFKYAE 1593
Query: 885 LLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGT 944
+LDL +LY NDIH MA+TYGIEAA RVI +E+K+VFAVYGI VDPRHLSLVADYM G
Sbjct: 1594 VLDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGV 1653
Query: 945 YVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
Y +NR GIR N S +Q+MTFE + ++QA+M G D LR+PSA +++G+ + GTGLF
Sbjct: 1654 YKPLNRFGIRSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVKGGTGLF 1713
Query: 1005 QLR 1007
+L+
Sbjct: 1714 ELK 1716
>gi|355762289|gb|EHH61926.1| hypothetical protein EGM_20072 [Macaca fascicularis]
Length = 1720
Score = 824 bits (2128), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/1143 (42%), Positives = 657/1143 (57%), Gaps = 151/1143 (13%)
Query: 1 MDGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA S +AEA L QYLVPKDG PL+GLIQDH++SGA ++ R F
Sbjct: 589 FDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFF 648
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL 116
TR +YM LVY+ L ++ PP+I KP PLWTGKQVLST++IN+ P+D + +
Sbjct: 649 TREQYMELVYRGLTDKVGRVKLFPPSILKPFPLWTGKQVLSTLLINIIPEDHIPLN---- 704
Query: 117 LSG---ILDKKQFGSTQYGLV----HAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHA 169
LSG I K T + ++ ++ V IR GELL G+LDK +GS+ YGLVH
Sbjct: 705 LSGKAKITGKAWVKETPRSVPGFNPDSMCESQVVIREGELLCGVLDKAHYGSSAYGLVHC 764
Query: 170 VWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGT 228
++ +G E + +L+CLA+LFT YLQ GFTLGV DILV+ + D KR +II ++ G
Sbjct: 765 CYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGP 824
Query: 229 EAACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCLPEG 287
A AL LP T + + + Q+A+ Q ID ++K ++ +N IN+ C+P G
Sbjct: 825 RAVRAALNLPEATSYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFG 884
Query: 288 LIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVS 347
L FP N+LQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PYE +
Sbjct: 885 LHRQFPENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFT 944
Query: 348 PRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYD 407
PRAGGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V YD
Sbjct: 945 PRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYD 1004
Query: 408 MTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICS--------------- 452
+TVRDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I
Sbjct: 1005 LTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHLHEVLSRADPKK 1064
Query: 453 ----YKVILNLLKKHPLSL--------------ALLLLLTFKSSGKPNFIFSPHRTKFTM 494
++ I KHP +L A + L +S + R+ T
Sbjct: 1065 ALRHFRAIKKWQSKHPNTLLRRGAFLSYSQKIQAAVKALNLESENRNG------RSPGTQ 1118
Query: 495 DLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK---GRT 551
++L WY+LD+++R+KY+KK CP P +S ++PD +F S+SE V Y++ +T
Sbjct: 1119 EMLRMWYELDEESRRKYQKKAATCPDPSLSVWRPDIYFASVSETFETKVDDYSQEWAAQT 1178
Query: 552 DASH------VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGD 605
+ S+ +D+ ++ K SL PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+
Sbjct: 1179 EKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGE 1238
Query: 606 MNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKV 665
MNVTLGIPRLREILM+A+ IKTP M +P L + K K+ L K +TR+ + +VL+K+
Sbjct: 1239 MNVTLGIPRLREILMVASANIKTPMMSVPVL-NTKKALKRVKSLKKQLTRVCLGEVLQKI 1297
Query: 666 KIKE--WLEISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKR 723
++E +E YQ++F F+P Y+ + ++P I+ E +F K L +I K+
Sbjct: 1298 DVQESFCMEEKQNKFRVYQLRFQFLPHAYYQQEKCLRPEDILRFMETRFFKLLMESIKKK 1357
Query: 724 --AAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGR-------VDVSSDE-ERDEE 773
A +N+N +R + D+ D+ GE G G VD ++E + D
Sbjct: 1358 NNKASAFRNVN---TRRATQRDL-DNAGESGRSRGEQEGDEEDEGHIVDAEAEEGDADAS 1413
Query: 774 DAVQSHKKV----------------------NQEEDNDFEE------PEDEERMSEREED 805
DA + K+ QEE N E DEE S EED
Sbjct: 1414 DAKRKEKQEEEVDYESEEEEEREGEENNDEDTQEERNPHREGARETQERDEEVGSGTEED 1473
Query: 806 DNTSNIGERFK-------IEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKL------ 852
+ + + + ++ V+ V H+ + Y YD + +WC++
Sbjct: 1474 PALPALLTQPRKPTHSQEPQGPEAVERRVQAVREIHSFIDDYQYDTEESLWCQVTVKLPL 1533
Query: 853 ----------------------------LFLPSNLFEEKESKHLLKTDGINVNFISQYRH 884
L + E + +L T+GIN+ + +Y
Sbjct: 1534 MKINFDMGSLVVSLAHGAVIYATKGITRCLLNETTNNKNEKELVLNTEGINLPELFKYAE 1593
Query: 885 LLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGT 944
+LDL +LY NDIH MA+TYGIEAA RVI +E+K+VFAVYGI VDPRHLSLVADYM G
Sbjct: 1594 VLDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGV 1653
Query: 945 YVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
Y +NR GIR N S +Q+MTFE + ++QA+M G D LR+PSA +++G+ + GTGLF
Sbjct: 1654 YKPLNRFGIRSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVKGGTGLF 1713
Query: 1005 QLR 1007
+L+
Sbjct: 1714 ELK 1716
>gi|297266454|ref|XP_002808090.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
RPA1-like [Macaca mulatta]
Length = 1722
Score = 824 bits (2128), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/1145 (42%), Positives = 658/1145 (57%), Gaps = 155/1145 (13%)
Query: 1 MDGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA S +AEA L QYLVPKDG PL+GLIQDH++SGA ++ R F
Sbjct: 591 FDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFF 650
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL 116
TR +YM LVY+ L ++ PP+I KP PLWTGKQVLST++IN+ P+D + +
Sbjct: 651 TREQYMELVYRGLTDKVGRVKLFPPSILKPFPLWTGKQVLSTLLINIIPEDHIPLN---- 706
Query: 117 LSG---ILDKKQFGSTQYGLV----HAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHA 169
LSG I K T + ++ ++ V IR GELL G+LDK +GS+ YGLVH
Sbjct: 707 LSGKAKITGKAWVKETPRSVPGFNPDSMCESQVVIREGELLCGVLDKAHYGSSAYGLVHC 766
Query: 170 VWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGT 228
++ +G E + +L+CLA+LFT YLQ GFTLGV DILV+ + D KR +II ++ G
Sbjct: 767 CYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGP 826
Query: 229 EAACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCLPEG 287
A AL LP T + + + Q+A+ Q ID ++K ++ +N IN+ C+P G
Sbjct: 827 RAVRAALNLPEATSYDEVQGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFG 886
Query: 288 LIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVS 347
L FP N+LQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PYE +
Sbjct: 887 LHRQFPENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFT 946
Query: 348 PRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYD 407
PRAGGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V YD
Sbjct: 947 PRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYD 1006
Query: 408 MTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICS--------------- 452
+TVRDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I
Sbjct: 1007 LTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHLHEVLSRADPKK 1066
Query: 453 ----YKVILNLLKKHPLSL--------------ALLLLLTFKSSGKPNFIFSPHRTKFTM 494
++ I KHP +L A + L +S + R+ T
Sbjct: 1067 ALRHFRAIKKWQSKHPNTLLRRGAFLSYSQKIQAAVKALNLESENRNG------RSPGTQ 1120
Query: 495 DLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK---GRT 551
++L WY+LD+++R+KY+KK CP P +S ++PD +F S+SE V Y++ +T
Sbjct: 1121 EMLRMWYELDEESRRKYQKKAATCPDPSLSVWRPDIYFASVSETFETKVDDYSQEWAAQT 1180
Query: 552 DASH------VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGD 605
+ S+ +D+ ++ K SL PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+
Sbjct: 1181 EKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGE 1240
Query: 606 MNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKV 665
MNVTLGIPRLREILM+A+ IKTP M +P L + K K+ L K +TR+ + +VL+K+
Sbjct: 1241 MNVTLGIPRLREILMVASANIKTPMMSVPVL-NTKKALKRVKSLKKQLTRVCLGEVLQKI 1299
Query: 666 KIKEWLEISPEPHMN----YQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIA 721
++E + E N YQ++F F+P Y+ + ++P I+ E +F K L +I
Sbjct: 1300 DVQESFRM--EEKQNKFRVYQLRFQFLPHAYYQQEKCLRPEDILRFMETRFFKLLMESIK 1357
Query: 722 KR--AAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGR-------VDVSSDE-ERD 771
K+ A +N+N +R + D+ D+ GE G G VD ++E + D
Sbjct: 1358 KKNNKASAFRNVN---TRRATQRDL-DNAGESGRSRGEQEGDEEDEGHIVDAEAEEGDAD 1413
Query: 772 EEDAVQSHKKV----------------------NQEEDNDFEE------PEDEERMSERE 803
DA + K+ QEE N E DEE S E
Sbjct: 1414 ASDAKRKEKQEEEVDYESEEEEEREGEENNDEDTQEERNPHREGARETQERDEEVGSGTE 1473
Query: 804 EDDNTSNIGERFK-------IEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKL---- 852
ED + + + + ++ V+ V H+ + Y YD + +WC++
Sbjct: 1474 EDPALPALLTQPRKPTHSQEPQGPEAVERRVQAVREIHSFIDDYQYDTEESLWCQVTVKL 1533
Query: 853 ------------------------------LFLPSNLFEEKESKHLLKTDGINVNFISQY 882
L + E + +L T+GIN+ + +Y
Sbjct: 1534 PLMKINFDMGSLVVSLAHGAVIYATKGITRCLLNETTNNKNEKELVLNTEGINLPELFKY 1593
Query: 883 RHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHS 942
+LDL +LY NDIH MA+TYGIEAA RVI +E+K+VFAVYGI VDPRHLSLVADYM
Sbjct: 1594 AEVLDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFE 1653
Query: 943 GTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTG 1002
G Y +NR GIR N S +Q+MTFE + ++QA+M G D LR+PSA +++G+ + GTG
Sbjct: 1654 GVYKPLNRFGIRSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVKGGTG 1713
Query: 1003 LFQLR 1007
LF+L+
Sbjct: 1714 LFELK 1718
>gi|380811490|gb|AFE77620.1| DNA-directed RNA polymerase I subunit RPA1 [Macaca mulatta]
Length = 1720
Score = 823 bits (2127), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/1143 (42%), Positives = 657/1143 (57%), Gaps = 151/1143 (13%)
Query: 1 MDGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA S +AEA L QYLVPKDG PL+GLIQDH++SGA ++ R F
Sbjct: 589 FDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFF 648
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL 116
TR +YM LVY+ L ++ PP+I KP PLWTGKQVLST++IN+ P+D + +
Sbjct: 649 TREQYMELVYRGLTDKVGRVKLFPPSILKPFPLWTGKQVLSTLLINIIPEDHIPLN---- 704
Query: 117 LSG---ILDKKQFGSTQYGLV----HAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHA 169
LSG I K T + ++ ++ V IR GELL G+LDK +GS+ YGLVH
Sbjct: 705 LSGKAKITGKAWVKETPRSVPGFNPDSMCESQVVIREGELLCGVLDKAHYGSSAYGLVHC 764
Query: 170 VWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGT 228
++ +G E + +L+CLA+LFT YLQ GFTLGV DILV+ + D KR +II ++ G
Sbjct: 765 CYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGP 824
Query: 229 EAACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCLPEG 287
A AL LP T + + + Q+A+ Q ID ++K ++ +N IN+ C+P G
Sbjct: 825 RAVRAALNLPEATSYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFG 884
Query: 288 LIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVS 347
L FP N+LQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PYE +
Sbjct: 885 LHRQFPENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFT 944
Query: 348 PRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYD 407
PRAGGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V YD
Sbjct: 945 PRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYD 1004
Query: 408 MTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICS--------------- 452
+TVRDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I
Sbjct: 1005 LTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHLHEVLSRADPKK 1064
Query: 453 ----YKVILNLLKKHPLSL--------------ALLLLLTFKSSGKPNFIFSPHRTKFTM 494
++ I KHP +L A + L +S + R+ T
Sbjct: 1065 ALRHFRAIKKWQSKHPNTLLRRGAFLSYSQKIQAAVKALNLESENRNG------RSPGTQ 1118
Query: 495 DLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK---GRT 551
++L WY+LD+++R+KY+KK CP P +S ++PD +F S+SE V Y++ +T
Sbjct: 1119 EMLRMWYELDEESRRKYQKKAATCPDPSLSVWRPDIYFASVSETFETKVDDYSQEWAAQT 1178
Query: 552 DASH------VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGD 605
+ S+ +D+ ++ K SL PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+
Sbjct: 1179 EKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGE 1238
Query: 606 MNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKV 665
MNVTLGIPRLREILM+A+ IKTP M +P L + K K+ L K +TR+ + +VL+K+
Sbjct: 1239 MNVTLGIPRLREILMVASANIKTPMMSVPVL-NTKKALKRVKSLKKQLTRVCLGEVLQKI 1297
Query: 666 KIKE--WLEISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKR 723
++E +E YQ++F F+P Y+ + ++P I+ E +F K L +I K+
Sbjct: 1298 DVQESFCMEEKQNKFRVYQLRFQFLPHAYYQQEKCLRPEDILRFMETRFFKLLMESIKKK 1357
Query: 724 --AAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGR-------VDVSSDE-ERDEE 773
A +N+N +R + D+ D+ GE G G VD ++E + D
Sbjct: 1358 NNKASAFRNVN---TRRATQRDL-DNAGESGRSRGEQEGDEEDEGHIVDAEAEEGDADAS 1413
Query: 774 DAVQSHKKV----------------------NQEEDNDFEE------PEDEERMSEREED 805
DA + K+ QEE N E DEE S EED
Sbjct: 1414 DAKRKEKQEEEVDYESEEEEEREGEENNDEDTQEERNPHREGARETQERDEEVGSGTEED 1473
Query: 806 DNTSNIGERFK-------IEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKL------ 852
+ + + + ++ V+ V H+ + Y YD + +WC++
Sbjct: 1474 PALPALLTQPRKPTHSQEPQGPEAVERRVQAVREIHSFIDDYQYDTEESLWCQVTVKLPL 1533
Query: 853 ----------------------------LFLPSNLFEEKESKHLLKTDGINVNFISQYRH 884
L + E + +L T+GIN+ + +Y
Sbjct: 1534 MKINFDMGSLVVSLAHGAVIYATKGITRCLLNETTNNKNEKELVLNTEGINLPELFKYAE 1593
Query: 885 LLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGT 944
+LDL +LY NDIH MA+TYGIEAA RVI +E+K+VFAVYGI VDPRHLSLVADYM G
Sbjct: 1594 VLDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGV 1653
Query: 945 YVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
Y +NR GIR N S +Q+MTFE + ++QA+M G D LR+PSA +++G+ + GTGLF
Sbjct: 1654 YKPLNRFGIRSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVKGGTGLF 1713
Query: 1005 QLR 1007
+L+
Sbjct: 1714 ELK 1716
>gi|355565864|gb|EHH22293.1| hypothetical protein EGK_05529 [Macaca mulatta]
Length = 1720
Score = 823 bits (2125), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/1143 (42%), Positives = 657/1143 (57%), Gaps = 151/1143 (13%)
Query: 1 MDGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA S +AEA L QYLVPKDG PL+GLIQDH++SGA ++ R F
Sbjct: 589 FDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFF 648
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL 116
TR +YM LVY+ L ++ PP+I KP PLWTGKQVLST++IN+ P+D + +
Sbjct: 649 TREQYMELVYRGLTDKVGRVKLFPPSILKPFPLWTGKQVLSTLLINIIPEDHIPLN---- 704
Query: 117 LSG---ILDKKQFGSTQYGLV----HAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHA 169
LSG I K T + ++ ++ V IR GELL G+LDK +GS+ YGLVH
Sbjct: 705 LSGKAKITGKAWVKETPRSVPGFNPDSMCESQVVIREGELLCGVLDKAHYGSSAYGLVHC 764
Query: 170 VWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGT 228
++ +G E + +L+CLA+LFT YLQ GFTLGV DILV+ + D KR +II ++ G
Sbjct: 765 CYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGP 824
Query: 229 EAACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCLPEG 287
A AL LP T + + + Q+A+ Q ID ++K ++ +N IN+ C+P G
Sbjct: 825 RAVRAALNLPEATSYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFG 884
Query: 288 LIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVS 347
L FP N+LQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PYE +
Sbjct: 885 LHRQFPENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFT 944
Query: 348 PRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYD 407
PRAGGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V YD
Sbjct: 945 PRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYD 1004
Query: 408 MTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICS--------------- 452
+TVRDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I
Sbjct: 1005 LTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHLHEVLSRADPKK 1064
Query: 453 ----YKVILNLLKKHPLSL--------------ALLLLLTFKSSGKPNFIFSPHRTKFTM 494
++ I KHP +L A + L +S + R+ T
Sbjct: 1065 ALRHFRAIKKWQSKHPNTLLRRGAFLSYSQKIQAAVKALNLESENRNG------RSPGTQ 1118
Query: 495 DLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK---GRT 551
++L WY+LD+++R+KY+KK CP P +S ++PD +F S+SE V Y++ +T
Sbjct: 1119 EMLRMWYELDEESRRKYQKKAATCPDPSLSVWRPDIYFASVSETFETKVDDYSQEWAAQT 1178
Query: 552 DASH------VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGD 605
+ S+ +D+ ++ K SL PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+
Sbjct: 1179 EKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGE 1238
Query: 606 MNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKV 665
MNVTLGIPRLREILM+A+ IKTP M +P L + K K+ L K +TR+ + +VL+K+
Sbjct: 1239 MNVTLGIPRLREILMVASANIKTPMMSVPVL-NTKKALKRVKSLKKQLTRVCLGEVLQKI 1297
Query: 666 KIKE--WLEISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKR 723
++E +E YQ++F F+P Y+ + ++P I+ E +F K L +I K+
Sbjct: 1298 DVQESFCMEEKQNKFRVYQLRFQFLPHAYYQQEKCLRPEDILRFMEIRFFKLLMESIKKK 1357
Query: 724 --AAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGR-------VDVSSDE-ERDEE 773
A +N+N +R + D+ D+ GE G G VD ++E + D
Sbjct: 1358 NNKASAFRNVN---TRRATQRDL-DNAGESGRSRGEQEGDEEDEGHIVDAEAEEGDADAS 1413
Query: 774 DAVQSHKKV----------------------NQEEDNDFEE------PEDEERMSEREED 805
DA + K+ QEE N E DEE S EED
Sbjct: 1414 DAKRKEKQEEEVDYESEEEEEREGEENNDEDTQEERNPHREGARETQERDEEVGSGTEED 1473
Query: 806 DNTSNIGERFK-------IEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKL------ 852
+ + + + ++ V+ V H+ + Y YD + +WC++
Sbjct: 1474 PALPALLTQPRKPTHSQEPQGPEAVERRVQAVREIHSFIDDYQYDTEESLWCQVTVKLPL 1533
Query: 853 ----------------------------LFLPSNLFEEKESKHLLKTDGINVNFISQYRH 884
L + E + +L T+GIN+ + +Y
Sbjct: 1534 MKINFDMGSLVVSLAHGAVIYATKGITRCLLNETTNNKNEKELVLNTEGINLPELFKYAE 1593
Query: 885 LLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGT 944
+LDL +LY NDIH MA+TYGIEAA RVI +E+K+VFAVYGI VDPRHLSLVADYM G
Sbjct: 1594 VLDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGV 1653
Query: 945 YVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
Y +NR GIR N S +Q+MTFE + ++QA+M G D LR+PSA +++G+ + GTGLF
Sbjct: 1654 YKPLNRFGIRSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVKGGTGLF 1713
Query: 1005 QLR 1007
+L+
Sbjct: 1714 ELK 1716
>gi|395853511|ref|XP_003799250.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 isoform 1
[Otolemur garnettii]
Length = 1720
Score = 822 bits (2124), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/1138 (41%), Positives = 662/1138 (58%), Gaps = 141/1138 (12%)
Query: 1 MDGWTQNASHFL-----KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTF 55
DG NA HF +AEA L QYLVPKDG PL+GLIQDH++SG ++ R F
Sbjct: 589 FDGDEMNA-HFPQNELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGTSMTTRCCF 647
Query: 56 LTRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGE 115
TR +YM LVY+ L ++ PP I KP PLWTGKQV+ST++IN+ P+D + +
Sbjct: 648 FTREQYMELVYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDHIPLN--- 704
Query: 116 LLSG---ILDKKQFGSTQYGLV----HAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVH 168
LSG I +K + ++ ++ V IR GELL G+LDK Q+GS+ YGLVH
Sbjct: 705 -LSGKAKISEKAWVKEPPRPVPGFDPDSMCESQVIIREGELLCGVLDKAQYGSSAYGLVH 763
Query: 169 AVWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLG 227
++ +G E + +L+CLA+LFT YLQ GFTLGV DILV+ + D KR +II ++ G
Sbjct: 764 CCYEIYGGETSGRVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADAKRQEIIEESTHCG 823
Query: 228 TEAACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCLPE 286
A AL LP T + + + Q+A+ Q ID ++K ++ +N IN+ C+P
Sbjct: 824 PRAVRAALNLPEATSCDEVQEKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPF 883
Query: 287 GLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEV 346
GL FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PYE
Sbjct: 884 GLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEF 943
Query: 347 SPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHY 406
+PRAGGFV GRF+TGI P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V Y
Sbjct: 944 TPRAGGFVTGRFLTGINPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQY 1003
Query: 407 DMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLS 466
D+TVRDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I K + +L +
Sbjct: 1004 DLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSKHLHEVLSRADPK 1063
Query: 467 LALLLLLTFKS-----SG----KPNFIFSPH------------------RTKFTMDLLEQ 499
AL + K SG K F+ R+ T +L+
Sbjct: 1064 KALRHIRAIKKWQSKHSGTLLRKGAFLSYSQKIEAAVKALNLQGKNQNGRSPETQQMLKM 1123
Query: 500 WYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK---GRTDASH- 555
WY+LD+++++KY+KK CP P +S ++PD +F S+SE + Y++ + + S+
Sbjct: 1124 WYELDEQSQRKYQKKAAPCPDPCLSAWRPDIYFASVSETFEKKIDDYSQEWAAQAEKSYK 1183
Query: 556 -----VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTL 610
+D+ ++ K SL +PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVTL
Sbjct: 1184 KSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTL 1243
Query: 611 GIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEW 670
GIPRLREILM+A+ IKTP M +P + K K+ L K +TR+ + +VL+K+ ++E
Sbjct: 1244 GIPRLREILMVASANIKTPMMSVPVF-NTKKALKRVKSLKKQLTRVCLGEVLQKIDVEES 1302
Query: 671 LEISPEPH--MNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQ-- 726
+ + + YQ++F F+P Y+ + ++P I+ E +F K L +I K++ +
Sbjct: 1303 FCMGEKQNKFRVYQLRFQFLPYAYYQQEKCLRPEDILHFMETRFFKLLVESIKKKSNKES 1362
Query: 727 GLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRVD----VSSDEERDEEDAVQSHKKV 782
+++N +R + D+++ G G + V ++ E + DA + +K
Sbjct: 1363 AFRSVN---TRRATQRDLDNVGGSGRSQGEEEGDEEEEGHIVDAEAEEGDADASDTKRKE 1419
Query: 783 NQEEDNDFE-------------------------------EPEDEERMSEREEDDNTSN- 810
QEE+ D++ + +DEE S+ EED T
Sbjct: 1420 KQEEEVDYDSEEEGEKEEEENEDEVMQEEGHIHGKGAQEAQEQDEELGSDAEEDSPTDAP 1479
Query: 811 -------IGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKL----------- 852
G + K + ++ + V+ V H+ + Y YD + +WC++
Sbjct: 1480 LIQPWKPTGSQ-KPQGTEAVDRRVQAVCEIHSFIEDYQYDTEESLWCQVTVKLPLMKINF 1538
Query: 853 -----------------------LFLPSNLFEEKESKHLLKTDGINVNFISQYRHLLDLN 889
L + + E + +L T+GIN+ + +Y +LDL
Sbjct: 1539 DMSSLVVSLAHGAVVYMTRGITRCLLNETVSNKNEKELVLHTEGINLPELFKYAEVLDLR 1598
Query: 890 KLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMN 949
+LY NDIH MA+TYGIEAA RVI +E+K+VFAVYGI VDPRHLSLVADYM G Y +N
Sbjct: 1599 RLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLN 1658
Query: 950 RNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLR 1007
R GIR N S +Q+MTFE + ++QA+M G D LR+PSA +++G+ + GTGLF+L+
Sbjct: 1659 RFGIRSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVKGGTGLFELK 1716
>gi|296223364|ref|XP_002757589.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 isoform 1
[Callithrix jacchus]
Length = 1720
Score = 821 bits (2121), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/1143 (42%), Positives = 664/1143 (58%), Gaps = 151/1143 (13%)
Query: 1 MDGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA S +AEA L QYLVPKDG PL+GLIQDH++SGA ++ R F
Sbjct: 589 FDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFF 648
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL 116
TR +YM LVY+ L ++ PP+I KP PLWTGKQV+ST++IN+ P+D + +
Sbjct: 649 TREQYMELVYRGLTDKLGRVKLFPPSILKPFPLWTGKQVVSTLLINIIPEDHIPLN---- 704
Query: 117 LSG---ILDKKQFGSTQYGLV----HAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHA 169
L+G I K T + ++ ++ V IR GELL G+LDK +GS+ YGLVH
Sbjct: 705 LTGKAKITGKAWVKETPQSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHC 764
Query: 170 VWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGT 228
++ +G E + +L+CLA+LFT YLQ GFTLGV DILV+ + D KR +II ++ G
Sbjct: 765 CYEIYGGEISGKVLTCLARLFTAYLQLYRGFTLGVEDILVKLKADVKRQQIIEESIHCGL 824
Query: 229 EAACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCLPEG 287
A AL LP + + + Q+A+ Q ID ++K ++ +N IN+ C+P G
Sbjct: 825 RAVRAALNLPEAASYDEVREKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFG 884
Query: 288 LIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVS 347
L FP N+LQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PYE +
Sbjct: 885 LHRQFPENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFT 944
Query: 348 PRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYD 407
PRAGGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V YD
Sbjct: 945 PRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYD 1004
Query: 408 MTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICS--------------- 452
+TVRDSD S++Q LYGEDGLDV K Q+L KQF FL N K I
Sbjct: 1005 LTVRDSDGSVVQFLYGEDGLDVPKTQFLQPKQFPFLASNYKAIMKSNHLHEVLSRADPKK 1064
Query: 453 ----YKVILNLLKKHPLSL----ALL-----LLLTFKS----SGKPNFIFSPHRTKFTMD 495
++ I KHP +L A L + K+ SG N R+ T +
Sbjct: 1065 ALRHFRAIKKWQSKHPNTLLRRGAFLNYSQKIQTAVKALNLESGNRN-----GRSLGTQE 1119
Query: 496 LLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK---GRTD 552
+L WY+LD+ +R+KY+KK +CP P +S ++PD HF S+SE V Y++ +T+
Sbjct: 1120 MLRMWYELDEHSRRKYQKKAASCPDPSLSVWRPDIHFASVSETFETKVDDYSQEWAAQTE 1179
Query: 553 ASH------VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDM 606
S+ +D+ ++ K SL PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+M
Sbjct: 1180 RSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEM 1239
Query: 607 NVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVK 666
NVTLGIPRLREILM+A+ IKTP M +P L + K K+ L K +TR+ + +VL+K+
Sbjct: 1240 NVTLGIPRLREILMVASANIKTPMMSVPVL-NTKKALKRVKSLKKQLTRVCLGEVLQKID 1298
Query: 667 IKEWLEISPEPHMN----YQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAK 722
++E L I E N YQ++F F+P Y+ + ++P I+ E +F K L +I K
Sbjct: 1299 VQESLCI--EEKQNKFRVYQLRFQFLPHACYQQEKCLRPEDILHFMETRFFKLLMESIRK 1356
Query: 723 R--AAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGR------VDVSSDE-ERDEE 773
+ A +N+N +R + D+++ E G VD +DE + D
Sbjct: 1357 KNNKASAFRNVN---TRRATQRDLDNAEESGRSRGEQEGDEEEEGHIVDAEADEGDTDAS 1413
Query: 774 DAVQSHKK----------------------VNQEEDNDFEE------PEDEERMSEREED 805
DA + K+ QEE N E +DEE S EE
Sbjct: 1414 DAKRKEKQEEEVDYESEEEEEKEGEENDDEDTQEEGNAHGEGAQETQEQDEEMASGAEEA 1473
Query: 806 DNTSNIGERFK-------IEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC-------- 850
+ + + + + +++ V+ V H+ + Y YD + +WC
Sbjct: 1474 PSLPALLTQPRKSTHSQEPQGAEASKHRVQAVREIHSFIEDYQYDTEESLWCQVTVKLPL 1533
Query: 851 -KLLFLPSNLF-------------------------EEKESKHLLKTDGINVNFISQYRH 884
K+ F S+L + E + +L T+GIN+ + +Y
Sbjct: 1534 MKINFDMSSLVVSLAHDAIVYTTKGITRCLLNETTNSKNEKELVLNTEGINLPELFKYAE 1593
Query: 885 LLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGT 944
+LDL++LY NDIH MA+TYGIEAA RVI +E+K+VFAVYGI VDPRHLSLVADYM G
Sbjct: 1594 ILDLHRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGV 1653
Query: 945 YVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
Y +NR GI+ N S +Q+MTFE + ++QA+M G D LR+PSA +++G+ + GTGLF
Sbjct: 1654 YKPLNRFGIQSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVKGGTGLF 1713
Query: 1005 QLR 1007
+L+
Sbjct: 1714 ELK 1716
>gi|348566419|ref|XP_003468999.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Cavia
porcellus]
Length = 1716
Score = 821 bits (2120), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/1122 (41%), Positives = 648/1122 (57%), Gaps = 119/1122 (10%)
Query: 1 MDGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA S +AEA L QYLVPKDG PL+GLIQDH++SGA +++R F
Sbjct: 595 FDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFF 654
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKV---IIRH 113
R +YM LVY+ L ++ PP I KP PLWTGKQV+ST++IN+ P+D + +I
Sbjct: 655 NREQYMELVYRGLTDRVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDYIPLNLIGK 714
Query: 114 GELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDT 173
++ ++ ++ ++ V IR GELL G+LDK +GS+ YGLVH ++
Sbjct: 715 AKIPGKAWVQETPRPVPNFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEI 774
Query: 174 HGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGTEAAC 232
+G E + +L+CLA+LFT YLQ GFTLG+ DILV+ + D KR +II ++ + G +A
Sbjct: 775 YGGETSGRVLTCLARLFTAYLQLYRGFTLGMEDILVKPKADEKRHQIIEESTQCGPQAVR 834
Query: 233 NALGLPLDTDPEIISSQLQEAYASIPQ--FRAQIDRQYKSLLDKVTNNINQVCLPEGLIE 290
AL LP + + + Q+A+ Q F ID ++K ++ +N IN+ C+P GL
Sbjct: 835 AALNLPDTASCDEVRDKWQDAHLGKDQRDFNV-IDMKFKEEVNHYSNEINKACMPFGLHR 893
Query: 291 PFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRA 350
FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PYE +PRA
Sbjct: 894 QFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRA 953
Query: 351 GGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTV 410
GGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V YD+TV
Sbjct: 954 GGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTV 1013
Query: 411 RDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALL 470
RDSD S++Q LYGEDGLD+ K +L KQF FL N + I K + +L + AL
Sbjct: 1014 RDSDGSVVQFLYGEDGLDIPKTPFLQPKQFPFLASNYEVIVKSKHLHEVLSRGESQKALR 1073
Query: 471 LLLTFKSSGKPNFIFSPHRTKF---------------------------TMDLLEQWYQL 503
K + P R F T +L+ WY+L
Sbjct: 1074 HFRAIKKWHSKHSSALPRRGAFLSYSQKIQAAVRALNLEGNNQNGRSPETQQMLQMWYEL 1133
Query: 504 DDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYT--------KGRTDASH 555
D+++R+KY KK +CP P +S ++PD + S+SE V Y K
Sbjct: 1134 DEQSRRKYEKKAASCPDPSLSVWRPDIYLASVSETFEKKVDDYCQEWAAGAEKSYKSELS 1193
Query: 556 VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRL 615
+D+ ++ K SL +PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVTLGIPRL
Sbjct: 1194 LDRLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRL 1253
Query: 616 REILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISP 675
REILM+A+ IKTP M +P + + K+ L K +TR+ + +VL+K+ ++E +
Sbjct: 1254 REILMVASANIKTPMMSVPVF-NTRRALKRVKTLKKQLTRVCLGEVLQKIDVEESFSMGE 1312
Query: 676 EPH--MNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKR--AAQGLKNM 731
+ + YQ++F F+P Y+ + ++P I+ E +F K L +I K+ A L+++
Sbjct: 1313 KQNKFRVYQLRFHFLPHAYYQQEKCLRPEDILHFMETRFFKLLMESIRKKQSKASALRSV 1372
Query: 732 NIEQSRDQMEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKK---------- 781
N ++ + DD + E G ++ D E DE DA S K
Sbjct: 1373 NTRRATQRDLDDAGESRRTRGEQEGDEEDEENI-VDAEADEGDADASDTKCKAKQEEEVD 1431
Query: 782 ----------------------VNQEEDNDFEEPEDEERMSEREEDDNTSNIGERFKIEF 819
++ E+ N +EP DEE S EED R + +
Sbjct: 1432 YESEEEEEKEEEEDDDAQEDGNIHPEDANQVQEP-DEEEGSGPEEDLPQKPPCRRREPQG 1490
Query: 820 RDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKL-LFLP--------SNLF---------- 860
++ V+ V H+ + Y YD + +WC++ L LP S+L
Sbjct: 1491 AEAVERRVQVVREAHSFIEDYQYDTEEGLWCQVTLKLPLMKINFDMSSLVVSLAHSAVVY 1550
Query: 861 ---------------EEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGI 905
+ E + +L T+GIN+ + +Y +LDL +LY NDIH MASTYGI
Sbjct: 1551 TTKGITRCLLNETTNSKNEKELVLNTEGINLPELFKYSEVLDLRRLYSNDIHAMASTYGI 1610
Query: 906 EAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTF 965
EAA RVI +E+K+VFAVYGI VDPRHLSLVADYM G Y +NR GI+ + S +Q+MTF
Sbjct: 1611 EAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIKSSSSPLQQMTF 1670
Query: 966 EMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLR 1007
E + ++QA+M G D L++PSA +M+G+ + GTGLF+L+
Sbjct: 1671 ETSFQFLKQATMMGSHDELKSPSACLMVGKVVKGGTGLFELK 1712
>gi|390474234|ref|XP_003734751.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 isoform 2
[Callithrix jacchus]
Length = 1660
Score = 820 bits (2119), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/1096 (44%), Positives = 656/1096 (59%), Gaps = 117/1096 (10%)
Query: 1 MDGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA S +AEA L QYLVPKDG PL+GLIQDH++SGA ++ R F
Sbjct: 589 FDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFF 648
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL 116
TR +YM LVY+ L ++ PP+I KP PLWTGKQV+ST++IN+ P+D + +
Sbjct: 649 TREQYMELVYRGLTDKLGRVKLFPPSILKPFPLWTGKQVVSTLLINIIPEDHIPLN---- 704
Query: 117 LSG---ILDKKQFGSTQYGLV----HAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHA 169
L+G I K T + ++ ++ V IR GELL G+LDK +GS+ YGLVH
Sbjct: 705 LTGKAKITGKAWVKETPQSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHC 764
Query: 170 VWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGT 228
++ +G E + +L+CLA+LFT YLQ GFTLGV DILV+ + D KR +II ++ G
Sbjct: 765 CYEIYGGEISGKVLTCLARLFTAYLQLYRGFTLGVEDILVKLKADVKRQQIIEESIHCGL 824
Query: 229 EAACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCLPEG 287
A AL LP + + + Q+A+ Q ID ++K ++ +N IN+ C+P G
Sbjct: 825 RAVRAALNLPEAASYDEVREKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFG 884
Query: 288 LIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVS 347
L FP N+LQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PYE +
Sbjct: 885 LHRQFPENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFT 944
Query: 348 PRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYD 407
PRAGGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V YD
Sbjct: 945 PRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYD 1004
Query: 408 MTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICS--------------- 452
+TVRDSD S++Q LYGEDGLDV K Q+L KQF FL N K I
Sbjct: 1005 LTVRDSDGSVVQFLYGEDGLDVPKTQFLQPKQFPFLASNYKAIMKSNHLHEVLSRADPKK 1064
Query: 453 ----YKVILNLLKKHPLSL----ALL-----LLLTFKS----SGKPNFIFSPHRTKFTMD 495
++ I KHP +L A L + K+ SG N R+ T +
Sbjct: 1065 ALRHFRAIKKWQSKHPNTLLRRGAFLNYSQKIQTAVKALNLESGNRN-----GRSLGTQE 1119
Query: 496 LLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK---GRTD 552
+L WY+LD+ +R+KY+KK +CP P +S ++PD HF S+SE V Y++ +T+
Sbjct: 1120 MLRMWYELDEHSRRKYQKKAASCPDPSLSVWRPDIHFASVSETFETKVDDYSQEWAAQTE 1179
Query: 553 ASH------VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDM 606
S+ +D+ ++ K SL PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+M
Sbjct: 1180 RSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEM 1239
Query: 607 NVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVK 666
NVTLGIPRLREILM+A+ IKTP M +P L + K K+ L K +TR+ + +VL+K+
Sbjct: 1240 NVTLGIPRLREILMVASANIKTPMMSVPVL-NTKKALKRVKSLKKQLTRVCLGEVLQKID 1298
Query: 667 IKEWLEISPEPHMN----YQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAK 722
++E L I E N YQ++F F+P Y+ + ++P I+ E +F K L +I K
Sbjct: 1299 VQESLCI--EEKQNKFRVYQLRFQFLPHACYQQEKCLRPEDILHFMETRFFKLLMESIRK 1356
Query: 723 R--AAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGR------VDVSSDE-ERDEE 773
+ A +N+N +R + D+++ E G VD +DE + D
Sbjct: 1357 KNNKASAFRNVN---TRRATQRDLDNAEESGRSRGEQEGDEEEEGHIVDAEADEGDTDAS 1413
Query: 774 DAVQSHKK----------------------VNQEEDNDFEEPEDEERMSEREEDDNTSNI 811
DA + K+ QEE N E E + E++E+ T +
Sbjct: 1414 DAKRKEKQEEEVDYESEEEEEKEGEENDDEDTQEEGNAHGEGAQETQ--EQDEEMVTVKL 1471
Query: 812 GERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNLFEEKESKHLLKT 871
KI F S+ V V H+ + Y K C LL +N EKE +L T
Sbjct: 1472 -PLMKINFDMSSLV----VSLAHDAI---VYTTKGITRC-LLNETTNSKNEKEL--VLNT 1520
Query: 872 DGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRH 931
+GIN+ + +Y +LDL++LY NDIH MA+TYGIEAA RVI +E+K+VFAVYGI VDPRH
Sbjct: 1521 EGINLPELFKYAEILDLHRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRH 1580
Query: 932 LSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARV 991
LSLVADYM G Y +NR GI+ N S +Q+MTFE + ++QA+M G D LR+PSA +
Sbjct: 1581 LSLVADYMCFEGVYKPLNRFGIQSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPSACL 1640
Query: 992 MLGQECRQGTGLFQLR 1007
++G+ + GTGLF+L+
Sbjct: 1641 VVGKVVKGGTGLFELK 1656
>gi|344297574|ref|XP_003420472.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
RPA1-like [Loxodonta africana]
Length = 1711
Score = 820 bits (2119), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/1134 (42%), Positives = 646/1134 (56%), Gaps = 144/1134 (12%)
Query: 2 DGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLT 57
DG NA S +AEA L QYLVPKDG PL+GLIQDH++SG +++R F T
Sbjct: 590 DGDEMNAHFPQSELGRAEACILACTDQQYLVPKDGQPLAGLIQDHMVSGTSMTIRGCFFT 649
Query: 58 RAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELL 117
R EYM LVY+ L ++ PP I KP LWTGKQV+ST++IN+ PKD + + L
Sbjct: 650 REEYMELVYRGLTDKVGRVKIFPPAILKPFCLWTGKQVVSTLLINIIPKDHIPLN----L 705
Query: 118 SGILDKKQFGSTQY---------GL-VHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLV 167
+G K + G + G ++ ++ V IR GELL G+LDK +GS+ YGLV
Sbjct: 706 TG---KAKIGGKAWVKEPPRPVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLV 762
Query: 168 HAVWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRL 226
H ++ +G E + +L+CLA+LFT YLQ GFTL V DILV+ + D KR +II ++
Sbjct: 763 HCCYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLDVEDILVKPKADVKRHRIIEESTHC 822
Query: 227 GTEAACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCLP 285
G A AL LP + I + Q+A+ Q ID ++K ++ +N IN+ C+P
Sbjct: 823 GARAVRAALNLPEAASCDEIRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMP 882
Query: 286 EGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYE 345
GL FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PYE
Sbjct: 883 FGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYE 942
Query: 346 VSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVH 405
+PRAGGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V
Sbjct: 943 FTPRAGGFVSGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQ 1002
Query: 406 YDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPL 465
YD+TVRDSD S++Q LYGEDGLD+ K Q+L +QF FL N + I K + +L +
Sbjct: 1003 YDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPRQFPFLASNCEVIMKSKHVHEVLSRADP 1062
Query: 466 SLALLLLLTFK--SSGKPNFIFSP-------------------------HRTKFTMDLLE 498
AL K S PN + R+ T ++L
Sbjct: 1063 QKALRHFRAIKKWQSKHPNTLLRKGAFLSYSQKVQAAVKALNLEGGNQNGRSPMTHEMLR 1122
Query: 499 QWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYT---KGRTDASH 555
WY+LD+++R+KY+KK CP P +S ++PD HF S+SE V Y+ R + S+
Sbjct: 1123 MWYELDEQSRRKYQKKAAPCPDPSLSVWRPDIHFASVSETFEKKVDAYSCEWASRAEKSY 1182
Query: 556 ------VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVT 609
+++ ++ K SL +PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVT
Sbjct: 1183 EKSEPSLERLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVT 1242
Query: 610 LGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKE 669
LGIPRLREILM+A+ IKTP M +P + K K+ L K +TR+ + +VL+K+ ++E
Sbjct: 1243 LGIPRLREILMVASANIKTPMMSVPVF-NTKKALKRVKSLKKQLTRVCLGEVLQKIDVQE 1301
Query: 670 --WLEISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQG 727
+E E YQ++F F+P Y+ + ++P I+ E +F K L +I K+ ++
Sbjct: 1302 SFRMETKQEKCRVYQLRFQFLPHACYQQEKCLRPEDILRFMETRFFKLLMESIRKKNSKA 1361
Query: 728 LKNMNIEQSRDQMEDDVEDDEGEGAE--------------GAGAALGRVDVSSDEERDEE 773
N+ R D D+ GE A A G D S + R+++
Sbjct: 1362 SAFRNVNTRRATQRD--LDNTGESRRNREQEDEEEEERIVDAEAEEGDADASDAKRREKQ 1419
Query: 774 ---------------------DAVQSHKKVNQE--EDNDFE-EPEDEERMSEREEDDNTS 809
+ +Q V+ E E+ D E P EE MS +
Sbjct: 1420 EEEVDYESEEEEEKEGEENEDEDMQEEGSVSGEGTEEQDQEVGPGPEEDMSLPQPRKAAR 1479
Query: 810 NIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCK------------------ 851
G + ++ ++ V H + Y YD + +WC+
Sbjct: 1480 GQGP----QGAEAEERRIQAVRESHAFIEDYKYDTEESLWCEVTVKLPLMKISFDMSSLV 1535
Query: 852 ------------------LLFLPSNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYV 893
LL +N EKE +L T+GIN+ + +Y +LDL +LY
Sbjct: 1536 VSLAQGAVVHATKGITRCLLNETTNKMNEKEL--VLNTEGINLPELFKYAEVLDLRRLYS 1593
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
NDIH MA+TYGIEAA RVI +E+K+VFAVYGI VDPRHLSLVADYM G Y +NR GI
Sbjct: 1594 NDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI 1653
Query: 954 RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLR 1007
R N S +Q+MTFE + ++QA+M G D LR+PSA +++G+ + GTGLF+L+
Sbjct: 1654 RSNSSPLQQMTFETSFQFLKQATMMGSHDELRSPSACLVVGKVVKGGTGLFELK 1707
>gi|197102302|ref|NP_001127373.1| DNA-directed RNA polymerase I subunit RPA1 [Pongo abelii]
gi|55728685|emb|CAH91082.1| hypothetical protein [Pongo abelii]
Length = 1659
Score = 820 bits (2117), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/1096 (43%), Positives = 651/1096 (59%), Gaps = 118/1096 (10%)
Query: 1 MDGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
+DG NA S +AEA L QYLVPKDG PL+GLIQDH++SGA ++ R F
Sbjct: 589 LDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFF 648
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL 116
TR +YM LVY+ L ++ L P+I KP PLWTGKQV+ST++IN+ P+D + +
Sbjct: 649 TREQYMELVYRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLN---- 704
Query: 117 LSG---ILDKKQFGSTQYGLV----HAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHA 169
LSG I K T + ++ ++ V IR GELL G+LDK +GS+ YGLVH
Sbjct: 705 LSGKAKITGKAWVKETPRSIPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHC 764
Query: 170 VWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGT 228
++ +G E + +L+CLA+LFT YLQ GFTLGV DILV+ + D +R +II ++ G
Sbjct: 765 CYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADVRRQRIIEESTHCGP 824
Query: 229 EAACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCLPEG 287
+A AL LP + + + Q+A+ Q ID ++K ++ +N IN+ C+P G
Sbjct: 825 QAVRAALNLPEAASYDEVRGKWQDAHLGRDQRDFNMIDLKFKEEVNHYSNEINKACMPFG 884
Query: 288 LIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVS 347
L FP N+LQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PYE +
Sbjct: 885 LHRQFPENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFT 944
Query: 348 PRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYD 407
PRAGGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V YD
Sbjct: 945 PRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYD 1004
Query: 408 MTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNI-------------------K 448
+TVRDSD ++Q LYGEDGLD+ K Q+L KQF FL N K
Sbjct: 1005 LTVRDSDGRVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHLHEVLSRADPKK 1064
Query: 449 WICSYKVILNLLKKHPLSL--------------ALLLLLTFKSSGKPNFIFSPHRTKFTM 494
+C ++ I KHP +L + L +S + R+ T
Sbjct: 1065 ALCHFRAIKKWQSKHPNTLLRRGAFLSYSQKIQEAVKALNLESENRNG------RSPGTQ 1118
Query: 495 DLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK---GRT 551
++L WY+LD+++R+KY+KK CP P +S ++PD +F S+SE V Y++ +T
Sbjct: 1119 EMLRMWYELDEESRRKYQKKAAICPDPSLSVWRPDIYFASVSETFETKVDDYSQEWAAQT 1178
Query: 552 DASH------VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGD 605
+ S+ +D+ ++ K SL PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+
Sbjct: 1179 EKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGE 1238
Query: 606 MNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKV 665
MNVTLGIPRLREILM+A+ IKTP M +P L + K K+ L K +TR+ + +VL+K+
Sbjct: 1239 MNVTLGIPRLREILMVASANIKTPMMSVPVL-NTKKALKRVKSLKKQLTRVCLGEVLQKI 1297
Query: 666 KIKE--WLEISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKR 723
++E +E YQ++F F+P Y+ + ++P I+ E +F K L +I K+
Sbjct: 1298 DVQESFCMEEKQNKFRVYQLRFQFLPHAYYQQEKCLRPEDILRFMETRFFKLLMESIKKK 1357
Query: 724 --AAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGR-------VDVSSDE-ERDEE 773
A +N+N +R + D+ D+ GE G G VD ++E + D
Sbjct: 1358 NNKASAFRNVN---TRRATQRDL-DNAGESGRSRGEQEGDEEEEGHIVDAEAEEGDFDAS 1413
Query: 774 DAVQSHKKVN----------------------QEEDNDFEEPEDEERMSEREEDDNTSNI 811
DA + K+ QEE N P E +E+D+ +
Sbjct: 1414 DAKRKEKQEEEVDYESEEEEEREGEENDDEDMQEERN----PCREGARKTQEQDEEVTVK 1469
Query: 812 GERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNLFEEKESKHLLKT 871
KI F S+ V V H V Y K C LL +N EKE +L T
Sbjct: 1470 LPLMKINFDMSSLV----VSLAHGAV---IYATKGITRC-LLNETTNKKNEKEL--VLNT 1519
Query: 872 DGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRH 931
+GIN+ + +Y +LDL +LY NDIH MA+TYGIEAA RVI +E+K+VFAVYGI VDPRH
Sbjct: 1520 EGINLPELFKYAEVLDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRH 1579
Query: 932 LSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARV 991
LSLVADYM G Y +NR GIR N S +Q+MTFE + ++QA+M G D LR+PSA +
Sbjct: 1580 LSLVADYMCFGGVYKPLNRFGIRSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPSACL 1639
Query: 992 MLGQECRQGTGLFQLR 1007
++G+ + GTGLF+L+
Sbjct: 1640 VVGKVVKGGTGLFELK 1655
>gi|402891470|ref|XP_003908969.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Papio anubis]
Length = 1720
Score = 819 bits (2116), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/1143 (41%), Positives = 656/1143 (57%), Gaps = 151/1143 (13%)
Query: 1 MDGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA S +AEA L QYLVPKDG PL+GLIQDH++SGA ++ R F
Sbjct: 589 FDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFF 648
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL 116
TR +YM LVY+ L ++ PP+I KP PLWTGKQVLST++IN+ P+D + +
Sbjct: 649 TREQYMELVYRGLTDKVGRVKLFPPSILKPFPLWTGKQVLSTLLINIIPEDHIPLN---- 704
Query: 117 LSG---ILDKKQFGSTQYGLV----HAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHA 169
LSG I K T + ++ ++ V IR GELL G+LDK +GS+ YGLVH
Sbjct: 705 LSGKAKITGKAWVKETPRSVPGFNPDSMCESQVVIREGELLCGVLDKAHYGSSAYGLVHC 764
Query: 170 VWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGT 228
++ +G E + +L+CLA+LFT YLQ GFTLGV DILV+ + D KR +II ++ G
Sbjct: 765 CYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGP 824
Query: 229 EAACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCLPEG 287
A AL LP T + + + Q+A+ Q ID ++K ++ +N IN+ C+P G
Sbjct: 825 RAVRAALNLPEATSYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFG 884
Query: 288 LIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVS 347
L FP N+LQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PYE +
Sbjct: 885 LHRQFPENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFT 944
Query: 348 PRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYD 407
PRAGGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V YD
Sbjct: 945 PRAGGFVTGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYD 1004
Query: 408 MTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICS--------------- 452
+TVRDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I
Sbjct: 1005 LTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHLHEVLSRADPKK 1064
Query: 453 ----YKVILNLLKKHPLSL--------------ALLLLLTFKSSGKPNFIFSPHRTKFTM 494
++ I KHP +L A + L +S + R+ T
Sbjct: 1065 ALRHFRAIKKWQSKHPNTLLRRGAFLSYSQKIQAAVKALNLESENRNG------RSPGTQ 1118
Query: 495 DLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK---GRT 551
++L WY+LD+++++KY+KK CP P +S ++PD +F S+SE V Y++ +
Sbjct: 1119 EMLRMWYELDEESQRKYQKKAATCPDPSLSVWRPDIYFASVSETFETKVDDYSQEWAAQA 1178
Query: 552 DASH------VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGD 605
+ S+ +D+ ++ K SL PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+
Sbjct: 1179 EKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGE 1238
Query: 606 MNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKV 665
MNVTLGIPRLREILM+A+ IKTP M +P L + K K+ L K +TR+ + +VL+K+
Sbjct: 1239 MNVTLGIPRLREILMVASANIKTPMMSVPVL-NTKKALKRVKSLKKQLTRVCLGEVLQKI 1297
Query: 666 KIKE--WLEISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKR 723
++E +E YQ++F F+P Y+ + ++P I+ E +F K L +I K+
Sbjct: 1298 DVQESFCMEEKQNKFRVYQLRFQFLPHAYYQQEKCLRPEDILRFMETRFFKLLMESIKKK 1357
Query: 724 --AAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGR-------VDVSSDE-ERDEE 773
A +N+N +R + D+ D+ GE G G VD ++E + D
Sbjct: 1358 NNKASAFRNVN---TRRATQRDL-DNAGESGRTRGEQEGDEEDEGHIVDAEAEEGDADAS 1413
Query: 774 DAVQSHKKVN----------------------QEEDNDFEE------PEDEERMSEREED 805
DA + K+ QEE N E DEE S EED
Sbjct: 1414 DAKRKEKQEEEVDYESEEEEEREGEENDDEDMQEERNPHREGARETQERDEEVGSGTEED 1473
Query: 806 DNTSNIGERFK-------IEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKL------ 852
+ + + + ++ V+ V H+ + Y YD + +WC++
Sbjct: 1474 PALPALLTQPRKPTHSQEPQGPEAMERRVQAVREIHSFIDDYQYDTEESLWCQVTVKLPL 1533
Query: 853 ----------------------------LFLPSNLFEEKESKHLLKTDGINVNFISQYRH 884
L + E + +L T+GIN+ + +Y
Sbjct: 1534 MKINFDMGSLVVSLAHGAVIYATKGITRCLLNETTNNKNEKELVLNTEGINLPELFKYAE 1593
Query: 885 LLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGT 944
+LDL +LY NDIH MA+TYGIEAA RVI +E+K+VFAVYGI VDPRHLSLVADYM G
Sbjct: 1594 VLDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGV 1653
Query: 945 YVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
Y +NR GIR N S +Q+MTFE + ++QA+M G D LR+PSA +++G+ + GTGLF
Sbjct: 1654 YKPLNRFGIRSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVKGGTGLF 1713
Query: 1005 QLR 1007
+L+
Sbjct: 1714 ELK 1716
>gi|410955237|ref|XP_003984263.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Felis catus]
Length = 1718
Score = 818 bits (2112), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 475/1127 (42%), Positives = 652/1127 (57%), Gaps = 121/1127 (10%)
Query: 1 MDGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA S +AEA L QYLVPKDG PL+GLIQDH++SGA ++ R F
Sbjct: 589 FDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTTRGCFF 648
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR-HGE 115
TR +YM L+Y+ L ++ PP I KP PLWTGKQV+ST++IN+ P+D + + G+
Sbjct: 649 TREQYMELLYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDHIPLSLSGK 708
Query: 116 L-LSGILDKKQFGSTQYGL-VHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDT 173
+SG ++ G ++ ++ V IR GELL G+LDK +GS+ YGLVH ++
Sbjct: 709 AKISGKAWVQESPRPVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEI 768
Query: 174 HGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGTEAAC 232
+G E + +L+CLA+LFT YLQ GFTLGV DILV+ + D KR ++I ++ G A
Sbjct: 769 YGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADVKRHRVIEESTHCGPRAVR 828
Query: 233 NALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCLPEGLIEP 291
AL LP + + + Q+A+ Q ID ++K ++ N IN+ C+P GL
Sbjct: 829 AALNLPEAASCDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYNNEINKACMPFGLHRQ 888
Query: 292 FPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAG 351
FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PYE +PRAG
Sbjct: 889 FPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAG 948
Query: 352 GFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVR 411
GFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V YD+TVR
Sbjct: 949 GFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVR 1008
Query: 412 DSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLL 471
DSD S++Q LYGEDGLD+ K Q+L KQF FL N + I K + +L + AL
Sbjct: 1009 DSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSKHLHEVLSRADPQKALRH 1068
Query: 472 LLTFK--SSGKPNFIF-------------------------SPHRTKFTMDLLEQWYQLD 504
K S PN + R+ T +L W +LD
Sbjct: 1069 FRAIKKWQSRHPNTMLRNGAFLNYSQKIQAAVKALNLEGGNQNGRSPGTHQILRMWGELD 1128
Query: 505 DKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYT---KGRTDASH------ 555
+++R+KY+KK ACP P +S ++PD +F S+SE V Y+ + + S+
Sbjct: 1129 EQSRRKYQKKAAACPDPSLSIWRPDIYFASVSETFEKKVDDYSLEWASQAEKSYEKSELS 1188
Query: 556 VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRL 615
+D+ ++ K SL +PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVTLGIPRL
Sbjct: 1189 LDRLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRL 1248
Query: 616 REILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISP 675
REILM+A+ IKTP M +P + K K+ L K +TR+ + +VLEK+ ++E I
Sbjct: 1249 REILMVASANIKTPMMSVPVF-NTKKALKRVKSLKKQLTRVCLGEVLEKIDVQESFCIGE 1307
Query: 676 --EPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKR--AAQGLKNM 731
+ YQ++F F+P Y+ + ++P I+ E +F K L +I K+ A +++
Sbjct: 1308 KRDKFQVYQLRFQFLPRAHYQQEKCLRPEDILHFMETRFFKILMESIRKKNNKASAFRSV 1367
Query: 732 NIEQSRDQMEDDVEDDEGEGAEGAGAALGRVD-VSSDEERDEEDAVQSHKKVNQ------ 784
N ++ + D+ D E E G V ++ E + DA + +K Q
Sbjct: 1368 NTRRATQRDLDNTGDSERNRGEQEGDEEEEGHIVDAEAEEGDADASDTKRKKKQEEEVDY 1427
Query: 785 ----------EEDNDFEE-------------PEDEERMSEREEDDNTSNIGERFKIEFR- 820
+D D +E +DEE S EED + + + R
Sbjct: 1428 ESEEDEVGEENDDEDMQEEGHGPGEGAEKAQEQDEEVGSGAEEDSAPAAPLTQPRKSTRV 1487
Query: 821 ------DSTNVFVKDVVNQHNIVHKYSYDKKNHMWC---------KLLFLPSNLF----- 860
++ + V H + Y YD + +WC K+ F S+L
Sbjct: 1488 REPQGAEAVERRAQAVRESHPFIEDYQYDTEESLWCQVTVKLPLMKINFDMSSLVVSLAQ 1547
Query: 861 --------------------EEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMA 900
++ E + +L T+GIN+ + +Y +LDL++LY NDIH MA
Sbjct: 1548 GTVVYATKGITRCLLNETTNKKNEKELVLNTEGINLPELFKYAEVLDLSRLYSNDIHAMA 1607
Query: 901 STYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFI 960
+TYGIEAA RVI +E+K+VFAVYGIEVDPRHLSLVADYM G Y +NR GIR N S +
Sbjct: 1608 NTYGIEAALRVIEKEIKDVFAVYGIEVDPRHLSLVADYMCFEGVYKPLNRFGIRSNSSPL 1667
Query: 961 QKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLR 1007
Q+MTFE + ++QA+M G D LR+PSA +++G+ R GTGLF+L+
Sbjct: 1668 QQMTFETSFQFLKQATMMGSHDELRSPSACIVVGKVVRGGTGLFELK 1714
>gi|449501452|ref|XP_004176870.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
RPA1 [Taeniopygia guttata]
Length = 1636
Score = 817 bits (2111), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/1093 (43%), Positives = 647/1093 (59%), Gaps = 117/1093 (10%)
Query: 1 MDGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA S +AEA L QYLVPKDG PL GLIQDH+ISG +++R F
Sbjct: 571 FDGDEMNAHFPQSELGRAEAYTLAITDKQYLVPKDGKPLPGLIQDHMISGVSMTIRGCFF 630
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL 116
TR +YM LVY+ L I+ PP I KP LWTGKQV+ST++IN+ P + H L
Sbjct: 631 TREQYMELVYRGLTDKKGRIKIFPPAIMKPQRLWTGKQVVSTLLINIIPDN-----HAPL 685
Query: 117 LSGILDKKQFGSTQYGL--------VHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVH 168
+ K + G + + ++ ++ V IR GELL G+LDK FGS+ YGLVH
Sbjct: 686 --NLTGKAKIGGRAWVKGPAKECLNLDSMCESQVIIRDGELLCGVLDKAHFGSSAYGLVH 743
Query: 169 AVWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLG 227
++ +G E + +L+CL +LFT YLQ GFT+G+ DILV++E D KR KII ++R+ G
Sbjct: 744 CCYEIYGGETSGKVLTCLGRLFTAYLQLYRGFTMGIEDILVKREADHKRKKIIERSRQSG 803
Query: 228 TEAACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCLPE 286
E AL LP E + + Q+A+ Q +D ++K ++ N +N+VC+P
Sbjct: 804 IEVVRAALNLPETASCEEVQGKWQDAHLCKDQRDFNMVDMKFKEEVNNYNNEVNKVCMPL 863
Query: 287 GLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEV 346
GL FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PY+
Sbjct: 864 GLHRSFPENNLQLMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFQPYDF 923
Query: 347 SPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHY 406
SP +GGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V Y
Sbjct: 924 SPSSGGFVTGRFLTGIRPSEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQY 983
Query: 407 DMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWI---------------- 450
D+TVRDSD S++Q LYGEDGLD+ K Q+L +QF F+ +N + I
Sbjct: 984 DLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPEQFPFIAENYEVIQKTNHLDEXLARMESH 1043
Query: 451 ---CSYKVILNLLKKHPLSL---ALLLLLTFKSSGK-----PNFIFSPHRTKFTMDLLEQ 499
+K I +H S+ LL + K P R T+ LL+
Sbjct: 1044 QANQQFKAIKKWRARHQNSVQREGGFLLFSQKKLASLKAQLPGGEIKNGRDPATLQLLKM 1103
Query: 500 WYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKY--------TKGRT 551
WY+LD+K ++KY KK CP P + ++PD HF S+SE V Y ++ T
Sbjct: 1104 WYELDEKKQRKYLKKTNKCPDPSLGVWRPDTHFASVSETFESGVEGYINKWESENSRSYT 1163
Query: 552 -DASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTL 610
A D+ D+++ K SL +PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVTL
Sbjct: 1164 HSALSSDRLKDLLYLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTL 1223
Query: 611 GIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEW 670
GIPR LM+A+ IKTP M +P L + K KK +L K +TR+ +A+VL+KV I+E
Sbjct: 1224 GIPRXXXXLMVASSNIKTPMMSVPVL-NTKKALKKVKQLKKLLTRVCLAEVLQKVDIEES 1282
Query: 671 LEISPE--PHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGL 728
L + + H Y++KF F+P YR++ VKP +I+ E +F K L AI KR +
Sbjct: 1283 LHVEHKLNKHRLYKIKFHFLPHEYYREEKCVKPRQILHFMETRFFKXLLEAI-KRKTTKM 1341
Query: 729 KNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDN 788
+ N +R +D++D G L ++ ++EE + DA + ++
Sbjct: 1342 ASFNEVSTRKTTRNDLDD-------GQDKTLNNLEAVAEEEENIVDA--------EADEG 1386
Query: 789 DFEEPEDEERMSEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHM 848
D + E + R ++ EE ++ K S V V VV H + Y++D +N +
Sbjct: 1387 DGDATETKRRKNQEEET-------KKGKDRLLQSAEVRVSAVVESHPSIQDYTFDTENEL 1439
Query: 849 WCKL-LFLP--------SNLF-------------------------EEKESKHLLKTDGI 874
WC++ L LP S+L +E E + +L+T+GI
Sbjct: 1440 WCEVSLALPLTKVYFDLSSLLGSLARSTVIHEVKGITRCLLNESTSKEGEKESVLQTEGI 1499
Query: 875 NVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSL 934
N+ + +Y +LDLN+LY NDIH MA YGIE+A RVII+E+K+VFAVYGI VDPRHLSL
Sbjct: 1500 NLAELFKYSDILDLNRLYCNDIHAMAKNYGIESALRVIIKEIKDVFAVYGIVVDPRHLSL 1559
Query: 935 VADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLG 994
VADYM G Y +NR GI+ N S +Q+MTFE + ++ A+M G D LR+PSA +++G
Sbjct: 1560 VADYMCFEGFYKPLNRIGIQSNSSPLQQMTFETSYKFLKDATMMGAHDELRSPSACLVVG 1619
Query: 995 QECRQGTGLFQLR 1007
+ + GTGLF L+
Sbjct: 1620 KVVKGGTGLFDLK 1632
>gi|363733636|ref|XP_420851.3| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
RPA1 [Gallus gallus]
Length = 1703
Score = 816 bits (2109), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/1128 (43%), Positives = 664/1128 (58%), Gaps = 132/1128 (11%)
Query: 1 MDGWTQNASHFL-----KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTF 55
DG NA HF +AEA L QYLVPKDG PL GLIQDH+ SG +++R F
Sbjct: 583 FDGDEMNA-HFPQNELGRAEAYTLAFTDEQYLVPKDGKPLPGLIQDHMXSGVSMTIRGCF 641
Query: 56 LTRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGE 115
TR +YM LVY+ L I+T PP I KP LWTGKQV+ST++IN+ P++ V +
Sbjct: 642 FTREQYMELVYRGLTDKKGRIKTFPPAIMKPQRLWTGKQVVSTLLINIIPENHVPLN--- 698
Query: 116 LLSGILDKKQFGSTQYGL--------VHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLV 167
L+G K + G + + ++ ++ V IR GELL G+LDK FGS+ YGLV
Sbjct: 699 -LTG---KAKIGGKAWMRGPANSCLNLDSLCESQVIIRSGELLCGVLDKAHFGSSAYGLV 754
Query: 168 HAVWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRL 226
H ++ +G E + +L+CL +LFT YLQ GFT+G+ DILV+ E DRKR KII K+ +
Sbjct: 755 HCCYEIYGGETSGKVLTCLGRLFTAYLQLYRGFTMGIEDILVKPEADRKRHKIIKKSSQC 814
Query: 227 GTEAACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCLP 285
G E AL LP + E + + Q+A+ Q +D ++K ++ N +N+VC+P
Sbjct: 815 GIEVVRAALNLPETSSCEDVQGKWQDAHLCKDQRDFNMVDLKFKEEVNNYNNEVNKVCMP 874
Query: 286 EGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYE 345
GL FP NNLQ MV+SGAKGSTVNT+QISCLLGQIELEG+RP +M SG++LP F PY+
Sbjct: 875 FGLHRSFPENNLQLMVQSGAKGSTVNTVQISCLLGQIELEGRRPPLMASGKSLPCFQPYD 934
Query: 346 VSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVH 405
SP +GGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V
Sbjct: 935 FSPSSGGFVTGRFLTGIKPSEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQ 994
Query: 406 YDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWI--------------- 450
YD+TVRDSD S++Q LYGEDGLD+ K Q+L +QF F+ DN + I
Sbjct: 995 YDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPEQFPFIADNYEVIQKTNHLNEALARMES 1054
Query: 451 ----CSYKVILNLLKKHPLSL---ALLLLLTFKSSGK-----PNFIFSPHRTKFTMDLLE 498
+K I +H S+ LL + K P R T+ LL+
Sbjct: 1055 HQAKQQFKAIRKWWARHQNSVQREGGFLLFSQKKMASVKTQIPGGESINGRDPATLQLLK 1114
Query: 499 QWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASH--- 555
WY+LD+K R+KY KK CP P ++ ++PD++F S+SE V Y R S
Sbjct: 1115 MWYELDEKKRRKYLKKANKCPDPSLAVWRPDSYFASVSETFESGVEDYINKRECKSRGGC 1174
Query: 556 ------VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVT 609
D+ D+++ K SL +PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVT
Sbjct: 1175 MQPALSSDRLKDLLYLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVT 1234
Query: 610 LGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKE 669
LGIPRLREILM+A+ IKTP M +P L K KK +L K +TR+ +A+VL+KV+++E
Sbjct: 1235 LGIPRLREILMVASANIKTPMMSVPVL-GTKKAHKKVKQLKKQLTRVCLAEVLQKVELEE 1293
Query: 670 WLEISPE--PHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQG 727
L + + H Y++KFCF+P YR++ VKP I+ E +F K AI +R A+
Sbjct: 1294 SLHLKNKENSHRLYKIKFCFLPYEYYREEKCVKPRDILRFMETRFFKIFLEAIRRRRAK- 1352
Query: 728 LKNMNIEQSRDQMEDDVE--DDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQE 785
+ + +R D+E D+ + + A + D E DE D + K+ +
Sbjct: 1353 MSSFTEVSTRKATRKDLEGVGDKAQNNQEAPEGEEEEKI-VDAEPDEGDGDATEAKMRRN 1411
Query: 786 E---------------------DNDFEEPEDEERMSEREEDDNTSNIGERFKIEF----- 819
+ +++ E E EER + +ED N ++ + + F
Sbjct: 1412 QEEEVDYESEEENGEENTAENPEDEEAESEKEERAQDADEDQNGADGDDSQHLPFMSQTK 1471
Query: 820 --RD----STNVFVKDVVNQHNIVHKYSYDKKNHMWCKL-LFLP--------SNLF---- 860
RD S V V V+N H + Y++D +N +WC++ L LP S+L
Sbjct: 1472 KERDQLLKSAEVRVNAVLNSHPSIQDYTFDTENELWCEVSLTLPLMKVYFDISSLLLSLT 1531
Query: 861 ---------------------EEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYM 899
E+ E + +L T+GIN+ + +Y +LDLN+LY NDIH M
Sbjct: 1532 RNTVIHEVKGITRCLLNESTNEKGEKELILHTEGINLAELFRYSDILDLNRLYSNDIHAM 1591
Query: 900 ASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSF 959
A YGIE+A RV+I+E+K+VFAVYGI VDPRHLSLVADYM G Y MNR GI+ + S
Sbjct: 1592 AKNYGIESALRVVIKEIKDVFAVYGIVVDPRHLSLVADYMCFEGVYKPMNRFGIQSSSSP 1651
Query: 960 IQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLR 1007
+Q+MTFE + +++A+M G D LR+PSA ++LG+ + GTGLF L+
Sbjct: 1652 LQQMTFETSYKFLKEATMMGAHDELRSPSACLVLGKVVKGGTGLFDLK 1699
>gi|307202220|gb|EFN81707.1| DNA-directed RNA polymerase I subunit RPA1 [Harpegnathos saltator]
Length = 1687
Score = 816 bits (2109), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/1121 (41%), Positives = 667/1121 (59%), Gaps = 121/1121 (10%)
Query: 2 DGWTQNASHF-----LKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA HF ++E+ +++VS+QYLVPKDG+PLSGLIQDH++SG +L+ R F
Sbjct: 568 DGDEMNA-HFPQNELARSESYNIVSVSNQYLVPKDGTPLSGLIQDHMVSGVRLTSRGRFF 626
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL 116
+RA+Y LVY AL + +I LPP I KP W+GKQ+LSTVIIN+ P +K I
Sbjct: 627 SRADYTQLVYTALSMKQGDIILLPPAIIKPKLQWSGKQILSTVIINIIPGNKARINLTSN 686
Query: 117 LSGILDKKQFG-------STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHA 169
L + Q ++ + + V IRHGELL G+LDK +G+T YGL+H
Sbjct: 687 TKISLKEWQVNEPRRWKCGKEFDDPKTMSEMEVIIRHGELLCGVLDKMHYGATPYGLIHC 746
Query: 170 VWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTE 229
+++ +G A +LS KLF +LQ GFTLG+ DIL+ +E D KR +II+ ++ +G+
Sbjct: 747 IYELYGGTCASKMLSAFGKLFQAFLQWNGFTLGIEDILITREADEKRKEIISNSKIIGSS 806
Query: 230 AACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLI 289
+A+ L DT + + + +E+Y S +FRAQ+DR+YK++LD TN+IN+ CLP GL
Sbjct: 807 IQRSAVELSDDTPMDEVRVKTEESYWSNSKFRAQVDRKYKNMLDVYTNDINKTCLPMGLS 866
Query: 290 EPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPR 349
+ FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEGKRP +M+SG++LPSF Y+ +PR
Sbjct: 867 KKFPDNNLQLMVQSGAKGSTVNTMQISCLLGQIELEGKRPPLMISGKSLPSFQAYDSTPR 926
Query: 350 AGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMT 409
AGG++ GRFMTGI+ QEFFFHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEGL ++YD T
Sbjct: 927 AGGYIVGRFMTGIKSQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLVINYDST 986
Query: 410 VRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNL---------- 459
VRDSD SLIQ YGEDGLD+ ++L +Q FL DN I + + NL
Sbjct: 987 VRDSDGSLIQFYYGEDGLDIPGSRFLKKEQIPFLVDNKDAIVDAEALENLKTGSSNNEKI 1046
Query: 460 -----------------LKKHPLS----LALLLLLTFKSSGKPNFIFSPHRTKFTMDLLE 498
L+K +S ++ + ++ K + + RTK + L++
Sbjct: 1047 MKLIKKIKKWKIKNGPPLQKRRISEFSKFSMENVNQNNNTKKNSVEKNCGRTKAALSLIK 1106
Query: 499 QWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDK 558
+W ++D + +K + + CP P++S ++ D FG +SE L + +Y +
Sbjct: 1107 KWMKIDKEMKKMFHIQCVRCPDPIMSKYRQDVEFGVLSERLESLLEEYLSHSPNIIK-KS 1165
Query: 559 FYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREI 618
D++ K + ++ PGE VG+LAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREI
Sbjct: 1166 LRDLLSMKVMKTICPPGEPVGLLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREI 1225
Query: 619 LMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPH 678
LMMA+K IKTPSMEIPF ++ KL K++ +L +T+ ++DVL+ + I +E +P
Sbjct: 1226 LMMASKNIKTPSMEIPFKSNLQKLTKQSKKLRVKLTKCVLSDVLKIITISRKMEEAPHRR 1285
Query: 679 MNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQ--- 735
+ + +K F+P Y+ + V P +I E+ F K + I K A + E+
Sbjct: 1286 LVHTIKIEFLPYKYYKGEFFVHPQYVIKQTEKTFFKNIFKEIKKIAKITGTLLYFEENNR 1345
Query: 736 ----SRDQMEDDVEDDEGEGAEGAGAA-------LGRVDVSSDEERDEEDA-VQSHKKVN 783
+ D M D + DE E LG + SSDEER EDA ++ ++
Sbjct: 1346 KRTNNEDAMLDQADPDEEESVRRERREDMRGERDLGEMHESSDEERAAEDADATMNRSIS 1405
Query: 784 QEEDN----------------------------DFEEPEDEERMSEREEDDNTSNIGERF 815
+ +N D + +E + ++DD T N+ R
Sbjct: 1406 RHRENQEYEDPEEEEMEDVMNNENEEADNNANKDLGNNQFDEDDDDDDDDDMTENLNYR- 1464
Query: 816 KIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLF----------LPSNL------ 859
K + R+S +V++ + Y YD+ WC+ F LP+ +
Sbjct: 1465 KNDKRNSNR--RSEVIHMYKNALDYDYDENKFSWCQFTFWLPLKMIKLDLPTIIRNVASK 1522
Query: 860 --------------FEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGI 905
F+ E + +LKTDG+N+ + +Y +L+LNKLY NDI+ ++ TYGI
Sbjct: 1523 TVLWETPYIKKAFTFQNNEGEMILKTDGLNIVEMFKYDSILNLNKLYSNDIYNISQTYGI 1582
Query: 906 EAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTF 965
EAANRVII+E+++VF +YGI VD RHLSL+ADYMT GT+ ++R G+ + S +Q+M+F
Sbjct: 1583 EAANRVIIKEIRDVFKMYGITVDSRHLSLIADYMTFDGTFQPLSRKGMENSSSPLQQMSF 1642
Query: 966 EMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
E L ++ A++QG++D L +PS+R+MLGQ C+ GTG+ L
Sbjct: 1643 ESSLNFLKTATLQGKKDDLLSPSSRLMLGQPCKSGTGICSL 1683
>gi|426336242|ref|XP_004029609.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Gorilla
gorilla gorilla]
Length = 1720
Score = 816 bits (2107), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/1144 (42%), Positives = 660/1144 (57%), Gaps = 155/1144 (13%)
Query: 2 DGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLT 57
DG NA S +AEA L QYLVPKDG PL+GLIQDH++SGA ++ R F T
Sbjct: 590 DGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFT 649
Query: 58 RAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELL 117
R +YM LVY+ L ++ L P+I KP PLWTGKQV+ST++IN+ P+D + + L
Sbjct: 650 REQYMELVYRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLN----L 705
Query: 118 SG---ILDKKQFGSTQYGLV----HAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAV 170
SG I K T + ++ ++ V IR GELL G+LDK +GS+ YGLVH
Sbjct: 706 SGKAKITGKAWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCC 765
Query: 171 WDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGTE 229
++ +G E + +L+CLA+LFT YLQ GFTLGV DILV+ + D KR +II ++ G +
Sbjct: 766 YEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGPQ 825
Query: 230 AACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCLPEGL 288
A AL LP + + + Q+A+ Q ID ++K ++ +N IN+ C+P GL
Sbjct: 826 AVRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGL 885
Query: 289 IEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSP 348
FP N+LQ MV+SGAKGSTVN MQISCLLGQIELEG+RP +M SG++LP F PYE +P
Sbjct: 886 HRQFPENSLQMMVQSGAKGSTVNAMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTP 945
Query: 349 RAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDM 408
RAGGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V YD+
Sbjct: 946 RAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDL 1005
Query: 409 TVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLA 468
TVRDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I + + +L + A
Sbjct: 1006 TVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHLHEVLSRADPKKA 1065
Query: 469 LLLLLTFK--SSGKPNFIF-------------------------SPHRTKFTMDLLEQWY 501
L K + PN + R+ T ++L WY
Sbjct: 1066 LRHFRAIKKWQNKHPNTLLRRGAFLSYSQKIQEAVKALKLESENRNGRSPGTQEMLRMWY 1125
Query: 502 QLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK---GRTDASH--- 555
+LD+++R+KY+KK ACP P +S ++PD +F S+SE V Y++ +T+ S+
Sbjct: 1126 ELDEESRRKYQKKAAACPDPSLSVWRPDIYFASVSETFETKVDDYSQEWAAQTEKSYEKS 1185
Query: 556 ---VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGI 612
VD+ ++ K SL PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVTLGI
Sbjct: 1186 ELSVDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGI 1245
Query: 613 PRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKE--W 670
PRLREILM+A+ IKTP M +P L + K K+ L K +TR+ + +VL+K+ ++E
Sbjct: 1246 PRLREILMVASANIKTPMMSVPVL-NTKKALKRVKSLKKQLTRVCLGEVLQKIDVQESFC 1304
Query: 671 LEISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKR--AAQGL 728
+E YQ++F F+P Y+ + ++P I+ E +F K L +I K+ A
Sbjct: 1305 MEEKQNKFQVYQLRFQFLPHAYYQQEKCLRPEDILRFMETRFFKLLMESIKKKNNKASAF 1364
Query: 729 KNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGR---------------VDVSSDE-ERDE 772
+N+N +R + D+ D+ GE LGR VD ++E + D
Sbjct: 1365 RNVN---TRRATQRDL-DNAGE--------LGRSRGEQEGDEEEEGHIVDAEAEEGDTDA 1412
Query: 773 EDAVQSHKKVN----------------------QEEDNDFEE------PEDEERMSEREE 804
DA + K+ QEE N E +DEE EE
Sbjct: 1413 SDAKRKEKQEEEVDYESEEEEEREGEENDDEDMQEERNPHREGARKTQEQDEEVGLGTEE 1472
Query: 805 DDNTSNIGERFK-------IEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC------- 850
D + + + + + ++ V+ V H+ + Y YD + +WC
Sbjct: 1473 DPSLPALLTQPRKPTHSQEPQGPEAMERRVQAVREIHSFIDDYQYDTEESLWCQVTVKLP 1532
Query: 851 --KLLFLPSNLF-------------------------EEKESKHLLKTDGINVNFISQYR 883
K+ F S+L + E + +L T+GIN+ + +Y
Sbjct: 1533 LMKINFDMSSLVVSLAHGAVIYATKGITRCLLNETTNNKNEKELVLNTEGINLPELFKYA 1592
Query: 884 HLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSG 943
+LDL +LY NDIH MA+TYGIEAA RVI +E+K+VFAVYGI VDPRHLSLVADYM G
Sbjct: 1593 EVLDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEG 1652
Query: 944 TYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGL 1003
Y +NR GIR N S +Q+MTFE + ++QA+M G D LR+PSA +++G+ + GTGL
Sbjct: 1653 VYKPLNRFGIRSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVKGGTGL 1712
Query: 1004 FQLR 1007
F+L+
Sbjct: 1713 FELK 1716
>gi|119619873|gb|EAW99467.1| polymerase (RNA) I polypeptide A, 194kDa, isoform CRA_a [Homo
sapiens]
gi|119619875|gb|EAW99469.1| polymerase (RNA) I polypeptide A, 194kDa, isoform CRA_a [Homo
sapiens]
Length = 1720
Score = 816 bits (2107), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/1144 (42%), Positives = 659/1144 (57%), Gaps = 155/1144 (13%)
Query: 2 DGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLT 57
DG NA S +AEA L QYLVPKDG PL+GLIQDH++SGA ++ R F T
Sbjct: 590 DGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFT 649
Query: 58 RAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELL 117
R YM LVY+ L ++ L P+I KP PLWTGKQV+ST++IN+ P+D + + L
Sbjct: 650 REHYMELVYRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLN----L 705
Query: 118 SG---ILDKKQFGSTQYGLV----HAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAV 170
SG I K T + ++ ++ V IR GELL G+LDK +GS+ YGLVH
Sbjct: 706 SGKAKITGKAWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCC 765
Query: 171 WDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGTE 229
++ +G E + +L+CLA+LFT YLQ GFTLGV DILV+ + D KR +II ++ G +
Sbjct: 766 YEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGPQ 825
Query: 230 AACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCLPEGL 288
A AL LP + + + Q+A+ Q ID ++K ++ +N IN+ C+P GL
Sbjct: 826 AVRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGL 885
Query: 289 IEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSP 348
FP N+LQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PYE +P
Sbjct: 886 HRQFPENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTP 945
Query: 349 RAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDM 408
RAGGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V YD+
Sbjct: 946 RAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDL 1005
Query: 409 TVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLA 468
TVRDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I + + +L + A
Sbjct: 1006 TVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHLHEVLSRADPKKA 1065
Query: 469 LLLLLTFK--SSGKPNFIF-------------------------SPHRTKFTMDLLEQWY 501
L K S PN + R+ T ++L WY
Sbjct: 1066 LHHFRAIKKWQSKHPNTLLRRGAFLSYSQKIQEAVKALKLESENRNGRSPGTQEMLRMWY 1125
Query: 502 QLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK---GRTDASH--- 555
+LD+++R+KY+KK ACP P +S ++PD +F S+SE V Y++ +T+ S+
Sbjct: 1126 ELDEESRRKYQKKAAACPDPSLSVWRPDIYFASVSETFETKVDDYSQEWAAQTEKSYEKS 1185
Query: 556 ---VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGI 612
+D+ ++ K SL PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVTLGI
Sbjct: 1186 ELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGI 1245
Query: 613 PRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKE--W 670
PRLREILM+A+ IKTP M +P L + K K+ L K +TR+ + +VL+K+ ++E
Sbjct: 1246 PRLREILMVASANIKTPMMSVPVL-NTKKALKRVKSLKKQLTRVCLGEVLQKIDVQESFC 1304
Query: 671 LEISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKR--AAQGL 728
+E YQ++F F+P Y+ + ++P I+ E +F K L +I K+ A
Sbjct: 1305 MEEKQNKFQVYQLRFQFLPHAYYQQEKCLRPEDILRFMETRFFKLLMESIKKKNNKASAF 1364
Query: 729 KNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGR---------------VDVSSDE-ERDE 772
+N+N +R + D+ D+ GE LGR VD ++E + D
Sbjct: 1365 RNVN---TRRATQRDL-DNAGE--------LGRSRGEQEGDEEEEGHIVDAEAEEGDADA 1412
Query: 773 EDAVQSHKKVN----------------------QEEDNDFEE------PEDEERMSEREE 804
DA + K+ QEE N E +DEE EE
Sbjct: 1413 SDAKRKEKQEEEVDYESEEEEEREGEENDDEDMQEERNPHREGARKTQEQDEEVGLGTEE 1472
Query: 805 DDNTSNIGERFK-------IEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC------- 850
D + + + + + ++ V+ V H + Y YD + +WC
Sbjct: 1473 DPSLPALLTQPRKPTHSQEPQGPEAMERRVQAVREIHPFIDDYQYDTEESLWCQVTVKLP 1532
Query: 851 --KLLFLPSNLF-------------------------EEKESKHLLKTDGINVNFISQYR 883
K+ F S+L + E + +L T+GIN+ + +Y
Sbjct: 1533 LMKINFDMSSLVVSLAHGAVIYATKGITRCLLNETTNNKNEKELVLNTEGINLPELFKYA 1592
Query: 884 HLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSG 943
+LDL +LY NDIH +A+TYGIEAA RVI +E+K+VFAVYGI VDPRHLSLVADYM G
Sbjct: 1593 EVLDLRRLYSNDIHAIANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEG 1652
Query: 944 TYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGL 1003
Y +NR GIR N S +Q+MTFE + ++QA+M G D LR+PSA +++G+ R GTGL
Sbjct: 1653 VYKPLNRFGIRSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVRGGTGL 1712
Query: 1004 FQLR 1007
F+L+
Sbjct: 1713 FELK 1716
>gi|328713218|ref|XP_001942957.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like
[Acyrthosiphon pisum]
Length = 1646
Score = 815 bits (2106), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/1092 (42%), Positives = 656/1092 (60%), Gaps = 92/1092 (8%)
Query: 1 MDGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA S K EA + + QYLVP+DG+PLSGLIQDH+IS ++++R F
Sbjct: 558 FDGDEMNAHLPQSELAKCEAKEIASAVYQYLVPRDGTPLSGLIQDHIISSVRMTVRGHFF 617
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL 116
TR EYM+ VYQAL + I+T+PP I KP+ LW+GKQ++ST+IINLTP ++ +
Sbjct: 618 TRREYMHFVYQALSSFDRAIKTVPPAIIKPVMLWSGKQIISTLIINLTPLNQKTYINLMS 677
Query: 117 LSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGA 176
S + K Y + + + +R+G LLSGILDK G++ Y LVH ++ +G
Sbjct: 678 KSKLEQKCWRNPNNYEYPDLLSEFNFIVRNGNLLSGILDKNHIGASTYSLVHCFYELYGG 737
Query: 177 EHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALG 236
+++ LLS +KLFTVYLQ FTLGV DILV ++ D R I++++ GT AA +LG
Sbjct: 738 KYSAQLLSAFSKLFTVYLQCDAFTLGVEDILVTEKADHLRQTAIDESKTAGTLAAQESLG 797
Query: 237 LPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANN 296
+ + + ++ +L E+Y+ F +DR YK L TN I + C+P+GL++PFP NN
Sbjct: 798 IEYMGE-DAMNIKLAESYSKSSHFPVLVDRNYKKHLQPFTNKITRACIPKGLLQPFPNNN 856
Query: 297 LQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDG 356
LQ MV+SGAKGSTVNT+QISC LGQIELEGKRP MM+SGRTLPSF P++ P+AGGF+
Sbjct: 857 LQLMVQSGAKGSTVNTIQISCCLGQIELEGKRPPMMISGRTLPSFPPFDTLPKAGGFIGS 916
Query: 357 RFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLS 416
RFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLE L V+YDMTVRDS+ S
Sbjct: 917 RFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLESLIVNYDMTVRDSNGS 976
Query: 417 LIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILN-----------------L 459
++Q LYGEDGL+VTK + +KQF FL N+ + K I N +
Sbjct: 977 IVQYLYGEDGLEVTKSSFFKEKQFDFLAGNVNSFKALKKIRNDECYKELDDKLEEIKSAM 1036
Query: 460 LKKHPLSLALLLLLTFKSSGKPNFIFSPH----RTKFTMDLLEQWYQLDDKARKKYRKKF 515
+ K +S L K + K P R + + +WY++++ +K Y +K
Sbjct: 1037 IIKKNISRQSEFLSWCKQTSKVKNKKHPKIKNGRCVQDIKICNKWYEINEDVKKSYSEKL 1096
Query: 516 KACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDK--FYDMIFYKNLLSLAN 573
+ P P+ ++F P H+G +SE + ++ KY + DK + I K + + A
Sbjct: 1097 QKVPDPVGASFHPGGHYGLLSEKMDSTINKYFDTNNGLNDNDKQIAKESIRLKAMAATAA 1156
Query: 574 PGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEI 633
GE VG +AAQS+GEPSTQMTLNTFHFAGRG+MNVTLGIPRLREILMMATK IKTPSMEI
Sbjct: 1157 AGEPVGCIAAQSVGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMMATKTIKTPSMEI 1216
Query: 634 PFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCFIPAHMY 693
PF ++ +A+ L K MT+I++ DVL KV+++E + ++P M Y + +P Y
Sbjct: 1217 PFFQS-ENVKNEADFLRKLMTKISLKDVLSKVQVREKVMLNPIRRMCYDLTLHLLPHRCY 1275
Query: 694 RDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQ--------SRDQMEDDVE 745
T V P ++ + F + L+ K ++ I + +R++ D+ E
Sbjct: 1276 ESTTHVTPKAVMRFIKNSFSESLKKMFVKNLSKNFSGELISEQTKNAIKINREKNNDNDE 1335
Query: 746 D---DEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSER 802
D DE E E A +VD S+ E E D+ +K Q E+ D+E+ ED+ MS+
Sbjct: 1336 DALLDESEPQETK--AKNQVDSDSESEAGEFDSAAMKRKA-QTEEYDYEKDEDDP-MSDE 1391
Query: 803 E--------EDDNTSNI-GERFKIEFRDSTNVF------VKDVVNQHN---IVHKYSYDK 844
E E D++ NI + KI+ S N ++D VN + IV K
Sbjct: 1392 EAEINDKQSECDDSPNIESQPIKIKHNTSDNEINIEDDNIEDFVNNKDYSQIVIDVKCGK 1451
Query: 845 KNHMWCKL-LFLP----------------------------SNLFEEKESKHLLKTDGI- 874
K + + + + +P + E++ K +LKT+G
Sbjct: 1452 KPYTFANIQVSIPLEYKRIDLTGLIKDLMGRVIIHEIPGINRAILTEEDDKIILKTEGSR 1511
Query: 875 NVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSL 934
V + ++ ++LDLN LY NDI M +TYGIEAANRVII+EVKNVF VYGI VD RHLSL
Sbjct: 1512 GVAELFRFANILDLNSLYCNDIQMMLNTYGIEAANRVIIKEVKNVFKVYGINVDTRHLSL 1571
Query: 935 VADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLG 994
+ADYMT+ G Y A+NR G+ PS +Q+M+FE L +++++++G +D+L +PS+ +++G
Sbjct: 1572 IADYMTYDGKYKALNRVGMNGCPSPLQQMSFESTLNYLKKSTVRGLKDNLVSPSSTLIIG 1631
Query: 995 QECRQGTGLFQL 1006
Q+ + G+GL +L
Sbjct: 1632 QQAQIGSGLVKL 1643
>gi|219518786|gb|AAI43346.1| Polymerase (RNA) I polypeptide A, 194kDa [Homo sapiens]
Length = 1720
Score = 815 bits (2106), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/1144 (42%), Positives = 659/1144 (57%), Gaps = 155/1144 (13%)
Query: 2 DGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLT 57
DG NA S +AEA L QYLVPKDG PL+GLIQDH++SGA ++ R F T
Sbjct: 590 DGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFT 649
Query: 58 RAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELL 117
R YM LVY+ L ++ L P+I KP PLWTGKQV+ST++IN+ P+D + + L
Sbjct: 650 REHYMELVYRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLN----L 705
Query: 118 SG---ILDKKQFGSTQYGLV----HAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAV 170
SG I K T + ++ ++ V IR GELL G+LDK +GS+ YGLVH
Sbjct: 706 SGKAKITGKAWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCC 765
Query: 171 WDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGTE 229
++ +G E + +L+CLA+LFT YLQ GFTLGV DILV+ + D KR +II ++ G +
Sbjct: 766 YEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGPQ 825
Query: 230 AACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCLPEGL 288
A AL LP + + + Q+A+ Q ID ++K ++ +N IN+ C+P GL
Sbjct: 826 AVRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGL 885
Query: 289 IEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSP 348
FP N+LQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PYE +P
Sbjct: 886 HRQFPENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTP 945
Query: 349 RAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDM 408
RAGGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V YD+
Sbjct: 946 RAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDL 1005
Query: 409 TVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLA 468
TVRDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I + + +L + A
Sbjct: 1006 TVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHLHEVLSRADPKKA 1065
Query: 469 LLLLLTFK--SSGKPNFIF-------------------------SPHRTKFTMDLLEQWY 501
L K S PN + R+ T ++L WY
Sbjct: 1066 LHHFRAIKKWQSKHPNTLLRRGAFLSYSQKIQEAVKALKLESENRNGRSPGTQEMLRMWY 1125
Query: 502 QLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK---GRTDASH--- 555
+LD+++R+KY+KK ACP P +S ++PD +F S+SE V Y++ +T+ S+
Sbjct: 1126 ELDEESRRKYQKKAAACPDPSLSVWRPDIYFASVSETFETKVDDYSQEWAAQTEKSYEKS 1185
Query: 556 ---VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGI 612
+D+ ++ K SL PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVTLGI
Sbjct: 1186 ELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGI 1245
Query: 613 PRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKE--W 670
PRLREILM+A+ IKTP M +P L + K K+ L K +TR+ + +VL+K+ ++E
Sbjct: 1246 PRLREILMVASANIKTPMMSVPVL-NTKKALKRVKSLKKQLTRVCLGEVLQKIDVQESFC 1304
Query: 671 LEISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKR--AAQGL 728
+E YQ++F F+P Y+ + ++P I+ E +F K L +I K+ A
Sbjct: 1305 MEEKQNKFQVYQLRFQFLPHAYYQQEKCLRPEDILRFMETRFFKLLMESIKKKNNKASAF 1364
Query: 729 KNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGR---------------VDVSSDE-ERDE 772
+N+N +R + D+ D+ GE LGR VD ++E + D
Sbjct: 1365 RNVN---TRRATQRDL-DNAGE--------LGRSRGEQEGDEEEEGHIVDAEAEEGDADA 1412
Query: 773 EDAVQSHKKVN----------------------QEEDNDFEE------PEDEERMSEREE 804
DA + K+ QEE N E +DEE EE
Sbjct: 1413 SDAKRKEKQEEEVDYESEEEEEREGEENDDEDMQEERNPHREGARKTQEQDEEVGLGTEE 1472
Query: 805 DDNTSNIGERFK-------IEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC------- 850
D + + + + + ++ V+ V H + Y YD + +WC
Sbjct: 1473 DPSLPALLTQPRKPTHSQEPQGPEAMERRVQAVREIHPFIDDYQYDTEESLWCQVTVKLP 1532
Query: 851 --KLLFLPSNLF-------------------------EEKESKHLLKTDGINVNFISQYR 883
K+ F S+L + E + +L T+GIN+ + +Y
Sbjct: 1533 LMKINFDMSSLVVSLAHGAVIYATKGITRCLLNETTNNKNEKELVLNTEGINLPELFKYA 1592
Query: 884 HLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSG 943
+LDL +LY NDIH +A+TYGIEAA RVI +E+K+VFAVYGI VDPRHLSLVADYM G
Sbjct: 1593 EVLDLRRLYSNDIHAIANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEG 1652
Query: 944 TYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGL 1003
Y +NR GIR N S +Q+MTFE + ++QA+M G D LR+PSA +++G+ R GTGL
Sbjct: 1653 VYKPLNRFGIRSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVRGGTGL 1712
Query: 1004 FQLR 1007
F+L+
Sbjct: 1713 FELK 1716
>gi|103471997|ref|NP_056240.2| DNA-directed RNA polymerase I subunit RPA1 [Homo sapiens]
gi|215273873|sp|O95602.2|RPA1_HUMAN RecName: Full=DNA-directed RNA polymerase I subunit RPA1; Short=RNA
polymerase I subunit A1; AltName: Full=A190; AltName:
Full=DNA-directed RNA polymerase I largest subunit;
AltName: Full=DNA-directed RNA polymerase I subunit A;
AltName: Full=RNA polymerase I 194 kDa subunit;
Short=RPA194
gi|111599664|gb|AAI17174.1| Polymerase (RNA) I polypeptide A, 194kDa [Homo sapiens]
gi|116497177|gb|AAI26304.1| Polymerase (RNA) I polypeptide A, 194kDa [Homo sapiens]
gi|221044078|dbj|BAH13716.1| unnamed protein product [Homo sapiens]
Length = 1720
Score = 815 bits (2106), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/1144 (42%), Positives = 659/1144 (57%), Gaps = 155/1144 (13%)
Query: 2 DGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLT 57
DG NA S +AEA L QYLVPKDG PL+GLIQDH++SGA ++ R F T
Sbjct: 590 DGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFT 649
Query: 58 RAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELL 117
R YM LVY+ L ++ L P+I KP PLWTGKQV+ST++IN+ P+D + + L
Sbjct: 650 REHYMELVYRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLN----L 705
Query: 118 SG---ILDKKQFGSTQYGLV----HAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAV 170
SG I K T + ++ ++ V IR GELL G+LDK +GS+ YGLVH
Sbjct: 706 SGKAKITGKAWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCC 765
Query: 171 WDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGTE 229
++ +G E + +L+CLA+LFT YLQ GFTLGV DILV+ + D KR +II ++ G +
Sbjct: 766 YEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGPQ 825
Query: 230 AACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCLPEGL 288
A AL LP + + + Q+A+ Q ID ++K ++ +N IN+ C+P GL
Sbjct: 826 AVRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGL 885
Query: 289 IEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSP 348
FP N+LQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PYE +P
Sbjct: 886 HRQFPENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTP 945
Query: 349 RAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDM 408
RAGGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V YD+
Sbjct: 946 RAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDL 1005
Query: 409 TVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLA 468
TVRDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I + + +L + A
Sbjct: 1006 TVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHLHEVLSRADPKKA 1065
Query: 469 LLLLLTFK--SSGKPNFIF-------------------------SPHRTKFTMDLLEQWY 501
L K S PN + R+ T ++L WY
Sbjct: 1066 LHHFRAIKKWQSKHPNTLLRRGAFLSYSQKIQEAVKALKLESENRNGRSPGTQEMLRMWY 1125
Query: 502 QLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK---GRTDASH--- 555
+LD+++R+KY+KK ACP P +S ++PD +F S+SE V Y++ +T+ S+
Sbjct: 1126 ELDEESRRKYQKKAAACPDPSLSVWRPDIYFASVSETFETKVDDYSQEWAAQTEKSYEKS 1185
Query: 556 ---VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGI 612
+D+ ++ K SL PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVTLGI
Sbjct: 1186 ELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGI 1245
Query: 613 PRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKE--W 670
PRLREILM+A+ IKTP M +P L + K K+ L K +TR+ + +VL+K+ ++E
Sbjct: 1246 PRLREILMVASANIKTPMMSVPVL-NTKKALKRVKSLKKQLTRVCLGEVLQKIDVQESFC 1304
Query: 671 LEISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKR--AAQGL 728
+E YQ++F F+P Y+ + ++P I+ E +F K L +I K+ A
Sbjct: 1305 MEEKQNKFQVYQLRFQFLPHAYYQQEKCLRPEDILRFMETRFFKLLMESIKKKNNKASAF 1364
Query: 729 KNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGR---------------VDVSSDE-ERDE 772
+N+N +R + D+ D+ GE LGR VD ++E + D
Sbjct: 1365 RNVN---TRRATQRDL-DNAGE--------LGRSRGEQEGDEEEEGHIVDAEAEEGDADA 1412
Query: 773 EDAVQSHKKVN----------------------QEEDNDFEE------PEDEERMSEREE 804
DA + K+ QEE N E +DEE EE
Sbjct: 1413 SDAKRKEKQEEEVDYESEEEEEREGEENDDEDMQEERNPHREGARKTQEQDEEVGLGTEE 1472
Query: 805 DDNTSNIGERFK-------IEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC------- 850
D + + + + + ++ V+ V H + Y YD + +WC
Sbjct: 1473 DPSLPALLTQPRKPTHSQEPQGPEAMERRVQAVREIHPFIDDYQYDTEESLWCQVTVKLP 1532
Query: 851 --KLLFLPSNLF-------------------------EEKESKHLLKTDGINVNFISQYR 883
K+ F S+L + E + +L T+GIN+ + +Y
Sbjct: 1533 LMKINFDMSSLVVSLAHGAVIYATKGITRCLLNETTNNKNEKELVLNTEGINLPELFKYA 1592
Query: 884 HLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSG 943
+LDL +LY NDIH +A+TYGIEAA RVI +E+K+VFAVYGI VDPRHLSLVADYM G
Sbjct: 1593 EVLDLRRLYSNDIHAIANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEG 1652
Query: 944 TYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGL 1003
Y +NR GIR N S +Q+MTFE + ++QA+M G D LR+PSA +++G+ R GTGL
Sbjct: 1653 VYKPLNRFGIRSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVRGGTGL 1712
Query: 1004 FQLR 1007
F+L+
Sbjct: 1713 FELK 1716
>gi|397491322|ref|XP_003816616.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Pan paniscus]
Length = 1720
Score = 811 bits (2095), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/1144 (42%), Positives = 659/1144 (57%), Gaps = 155/1144 (13%)
Query: 2 DGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLT 57
DG NA S +AEA L QYLVPKDG PL+GLIQDH++SGA ++ R F T
Sbjct: 590 DGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFT 649
Query: 58 RAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELL 117
R +YM LVY+ L ++ L P+I KP LWTGKQV+ST++IN+ P+D + + L
Sbjct: 650 REQYMELVYRGLTDKVGRVKLLSPSILKPFALWTGKQVVSTLLINIIPEDHIPLN----L 705
Query: 118 SG---ILDKKQFGSTQYGLV----HAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAV 170
SG I K T + ++ ++ V IR GELL G+LDK +GS+ YGLVH
Sbjct: 706 SGKAKITGKAWVKETPQSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCC 765
Query: 171 WDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGTE 229
++ +G E + +L+CLA+LFT YLQ GFTLGV DILV+ + D KR +II ++ G +
Sbjct: 766 YEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGPQ 825
Query: 230 AACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCLPEGL 288
A AL LP + + + Q+A+ Q ID ++K ++ +N IN+ C+P GL
Sbjct: 826 AVRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGL 885
Query: 289 IEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSP 348
FP N+LQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PYE +P
Sbjct: 886 HRQFPENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTP 945
Query: 349 RAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDM 408
RAGGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V YD+
Sbjct: 946 RAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDL 1005
Query: 409 TVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLA 468
TVRDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I + + +L + A
Sbjct: 1006 TVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHLHEVLSRADPKKA 1065
Query: 469 LLLLLTFK--SSGKPNFIF-------------------------SPHRTKFTMDLLEQWY 501
L K S PN + R+ T ++L WY
Sbjct: 1066 LRHFRAIKKWQSKHPNTLLRRGAFLSYSRKIQEAVKALKLESENRNGRSPGTQEMLRMWY 1125
Query: 502 QLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK---GRTDASH--- 555
+LD+++R+KY+KK ACP P +S ++PD +F S+SE V Y++ +T+ S+
Sbjct: 1126 ELDEESRRKYQKKAAACPDPSLSVWRPDIYFASVSETFETKVDDYSQEWAAQTEKSYEKS 1185
Query: 556 ---VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGI 612
+D+ ++ K SL PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVTLGI
Sbjct: 1186 ELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGI 1245
Query: 613 PRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKE--W 670
PRLREILM+A+ IKTP M +P L + K K+ L K +TR+ + +VL+K+ ++E
Sbjct: 1246 PRLREILMVASANIKTPMMRVPVL-NTKKALKRVKSLKKQLTRVCLGEVLQKIDVQESFC 1304
Query: 671 LEISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKR--AAQGL 728
+E YQ++F F+P Y+ + ++P I+ E +F K L +I K+ A
Sbjct: 1305 MEEKQNKFQVYQLRFQFLPHAYYQQEKCLRPEDILRFMETRFFKLLMESIKKKNNKASTF 1364
Query: 729 KNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGR---------------VDVSSDE-ERDE 772
+N+N +R + D+ D+ GE LGR VD ++E + D
Sbjct: 1365 RNVN---TRRATQRDL-DNTGE--------LGRSRGEQEGDEEEEGHIVDAEAEEGDADA 1412
Query: 773 EDAVQSHKKVN----------------------QEEDNDFEE------PEDEERMSEREE 804
DA + K+ QEE N E +DEE EE
Sbjct: 1413 SDAKRKEKQEEEVDYESEEEEEREGEENDDEDMQEERNPHREGARKTQEQDEEVGLGTEE 1472
Query: 805 DDNTSNIGERFK-------IEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC------- 850
D + + + + + ++ V+ V H + Y YD + +WC
Sbjct: 1473 DPSLPALLTQPRKPTHSQEPQGPEAMERRVQAVREIHPFIDDYQYDTEESLWCQVTVKLP 1532
Query: 851 --KLLFLPSNLF-------------------------EEKESKHLLKTDGINVNFISQYR 883
K+ F S+L + E + +L T+GIN+ + +Y
Sbjct: 1533 LMKINFDMSSLVVSLAHGAVIYATKGITRCLLNETTNNKNEKELVLNTEGINLPELFKYA 1592
Query: 884 HLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSG 943
++DL +LY NDIH MA+TYGIEAA RVI +E+K+VFAVYGI VDPRHLSLVADYM G
Sbjct: 1593 EVVDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEG 1652
Query: 944 TYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGL 1003
Y +NR GIR N S +Q+MTFE + ++QA+M G D LR+PSA +++G+ + GTGL
Sbjct: 1653 VYKPLNRFGIRSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVKGGTGL 1712
Query: 1004 FQLR 1007
F+L+
Sbjct: 1713 FELK 1716
>gi|410035335|ref|XP_003949878.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Pan
troglodytes]
Length = 1659
Score = 810 bits (2091), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/1093 (43%), Positives = 649/1093 (59%), Gaps = 114/1093 (10%)
Query: 2 DGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLT 57
DG NA S +AEA L QYLVPKDG PL+GLIQDH++SGA ++ R F T
Sbjct: 590 DGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFT 649
Query: 58 RAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELL 117
R +YM LVY+ L ++ L P+I KP LWTGKQV+ST++IN+ P+D + + L
Sbjct: 650 REQYMELVYRGLTDKVGRVKLLSPSILKPFALWTGKQVVSTLLINIIPEDHIPLN----L 705
Query: 118 SG---ILDKKQFGSTQYGLV----HAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAV 170
SG I K T + ++ ++ V IR GELL G+LDK +GS+ YGLVH
Sbjct: 706 SGKAKITGKAWVKETPQSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCC 765
Query: 171 WDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGTE 229
++ +G E + +L+CLA+LFT YLQ GFTLGV DILV+ + D KR +II ++ G +
Sbjct: 766 YEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGPQ 825
Query: 230 AACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCLPEGL 288
A AL LP + + + Q+A+ Q ID ++K ++ +N IN+ C+P GL
Sbjct: 826 AVRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGL 885
Query: 289 IEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSP 348
FP N+LQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PYE +P
Sbjct: 886 HRQFPENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTP 945
Query: 349 RAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDM 408
RAGGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V YD+
Sbjct: 946 RAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDL 1005
Query: 409 TVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLA 468
TVRDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I + + +L + A
Sbjct: 1006 TVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHLHEVLSRADPKKA 1065
Query: 469 LLLLLTFK--SSGKPNFIF-------------------------SPHRTKFTMDLLEQWY 501
L K S PN + R+ T ++L WY
Sbjct: 1066 LRHFRAVKKWQSKHPNTLLRRGAFLSYSQKIQEAVKALKLESENRNGRSPGTQEMLRMWY 1125
Query: 502 QLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK---GRTDASH--- 555
+LD+++R+KY+KK ACP P +S ++PD +F S+SE V Y++ +T+ S+
Sbjct: 1126 ELDEESRRKYQKKAAACPDPSLSVWRPDIYFASVSETFETKVDDYSQEWAAQTEKSYEKS 1185
Query: 556 ---VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGI 612
+D+ ++ K SL PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVTLGI
Sbjct: 1186 ELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGI 1245
Query: 613 PRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKE--W 670
PRLREILM+A+ IKTP M +P L + K K+ L K +TR+ + +VL+K+ ++E
Sbjct: 1246 PRLREILMVASANIKTPMMRVPVL-NTKKALKRVKSLKKQLTRVCLGEVLQKIDVQESFC 1304
Query: 671 LEISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKR--AAQGL 728
+E YQ++F F+P Y+ + ++P I+ E +F K L +I K+ A
Sbjct: 1305 MEEKQNKFQVYQLRFQFLPHAYYQQEKCLRPEDILHFMETRFFKLLMESIKKKNNKASTF 1364
Query: 729 KNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGR---------------VDVSSDE-ERDE 772
+N+N +R + D+ D+ GE LGR VD ++E + D
Sbjct: 1365 RNVN---TRRATQRDL-DNTGE--------LGRSRGLEEGDEEEEGHIVDPFAEEGDADA 1412
Query: 773 EDAVQSHKK------------------VNQEEDNDFEEPEDEERMSEREEDDNTSNIGER 814
DA K+ + E+ + P E +E+D+ +
Sbjct: 1413 SDAKPLEKQEEEVDYESEEEEEREGEENDDEDMEEERNPHREGARKTQEQDEEVTVKLPL 1472
Query: 815 FKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNLFEEKESKHLLKTDGI 874
KI F S+ V V H V Y K C LL +N EKE +L T+GI
Sbjct: 1473 MKINFDMSSLV----VSLAHGAV---IYATKGITRC-LLNETTNNKNEKEL--VLNTEGI 1522
Query: 875 NVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSL 934
N+ + +Y +LDL +LY NDIH MA+TYGIEAA RVI +E+K+VFAVYGI VDPRHLSL
Sbjct: 1523 NLPELFKYAEVLDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSL 1582
Query: 935 VADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLG 994
VADYM G Y +NR GIR N S +Q+MTFE + ++QA+M G D LR+PSA +++G
Sbjct: 1583 VADYMCFEGVYKPLNRFGIRSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPSACLVVG 1642
Query: 995 QECRQGTGLFQLR 1007
+ + GTGLF+L+
Sbjct: 1643 KVVKGGTGLFELK 1655
>gi|338714112|ref|XP_001916227.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
RPA1 [Equus caballus]
Length = 1720
Score = 808 bits (2088), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 475/1128 (42%), Positives = 654/1128 (57%), Gaps = 123/1128 (10%)
Query: 2 DGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLT 57
DG NA S +AEA L QYLVPKDG PL+GLIQDH++SGA +++R F T
Sbjct: 590 DGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFT 649
Query: 58 RAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR-HGEL 116
R +YM LVY+ L ++ P I KP PLWTGKQV+ST++IN+ P+D + + G+
Sbjct: 650 REQYMELVYRGLTDKVGRVKLFSPAILKPFPLWTGKQVVSTLLINIIPEDCIPLNLSGKA 709
Query: 117 -LSGILDKKQFGSTQYGL-VHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTH 174
+SG K+ G ++ ++ V IR GELL G+LDK +GS+ YGLVH ++ +
Sbjct: 710 KISGKAWVKEPPRPVPGFHPDSMCESQVIIRAGELLCGVLDKAHYGSSAYGLVHCCYEIY 769
Query: 175 GAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGTEAACN 233
G E + +L+CLA+LFT YLQ GFTLGV DILV+ + D +R +I+ ++ G A
Sbjct: 770 GGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADVRRRRIVEESTHCGPRAVRA 829
Query: 234 ALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCLPEGLIEPF 292
AL LP + + + Q+A+ Q ID ++K ++ +N IN+ C+P GL F
Sbjct: 830 ALNLPEAASCDEVREKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQF 889
Query: 293 PANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGG 352
P NNLQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PYE +PRAGG
Sbjct: 890 PENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGG 949
Query: 353 FVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRD 412
FV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V YD+TVRD
Sbjct: 950 FVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRD 1009
Query: 413 SDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLL 472
SD S++Q LYGEDGLD+ K Q+L KQF FL N + I K + +L + AL
Sbjct: 1010 SDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSKHLHEVLSRADPQKALRHF 1069
Query: 473 LTFK--SSGKPNFIFSP-------------------------HRTKFTMDLLEQWYQLDD 505
K S PN + R+ T +L W +LD+
Sbjct: 1070 RAIKKWQSKHPNILLRKGAFLNYSQKIQAAVKASNVEGGNQNGRSPGTHQMLRMWGELDE 1129
Query: 506 KARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYT---KGRTDASH------V 556
++R+KY+KK CP P +S ++PD +F S+SE V Y+ + + S+ +
Sbjct: 1130 QSRRKYQKKAAPCPDPSLSVWRPDIYFASVSETFEKKVDDYSHEWASQAERSYEKSELSL 1189
Query: 557 DKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLR 616
D+ ++ K +L +PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVTLGIPRLR
Sbjct: 1190 DRLRTLLQLKWQRALCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLR 1249
Query: 617 EILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPE 676
EILM+A+ IKTP M +P L + K K+ L K +TR+ + +VL+K+ ++E + +
Sbjct: 1250 EILMVASANIKTPMMSVPVL-NTKKALKRVKSLKKQLTRVCLGEVLQKIDVEESFCMGEK 1308
Query: 677 PH--MNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKR--AAQGLKNMN 732
+ YQ++F F+P Y+ + ++P I+ E +F K L AI K+ A +++N
Sbjct: 1309 QNKFRVYQLRFQFLPHAYYQQEKCLRPEDILHFMETRFFKILMEAIRKKNNKASAFRSVN 1368
Query: 733 IEQSRDQMEDDVEDDE---GEGAEGAGAALGRVDVSSDE-ERDEEDAVQSHKK------- 781
++ + D+ + E GE VD ++E + D DA + K+
Sbjct: 1369 TRRATQRDLDNAGESERIRGEQEGDEEEEGRIVDAEAEEGDADASDAKRKEKQEEEVDYE 1428
Query: 782 ----------------VNQEEDNDFEEP-----EDEERMSEREEDDNTSNIGERFKIEFR 820
V +E E P +DEE S EED + + + R
Sbjct: 1429 SEEEEEKEGEENDDDDVQEEGPVCGEGPRKAQKQDEEVGSGPEEDSPPAAPLTQPRKPTR 1488
Query: 821 -------DSTNVFVKDVVNQHNIVHKYSYDKKNHMWC---------KLLFLPSNLF---- 860
++ V+ V H+ + Y YD + ++WC K+ F S+L
Sbjct: 1489 TREPQGAEAVERRVQAVRESHSFIEDYQYDTEENLWCQVTVKLPLMKINFDMSSLVVSLA 1548
Query: 861 ---------------------EEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYM 899
E + +L T+GIN+ + +Y +LDL +LY NDIH M
Sbjct: 1549 HDAVVYTTKGITRCLLNETTNNRNEKELVLNTEGINLPELFKYAEVLDLRRLYSNDIHAM 1608
Query: 900 ASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSF 959
ASTYGIEAA RVI +E+K+VFAVYGI VDPRHLSLVADYM G Y +NR GIR N S
Sbjct: 1609 ASTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIRSNSSP 1668
Query: 960 IQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLR 1007
+Q+MTFE + ++QA+M G D LR+PSA +++G+ R GTGLF+L+
Sbjct: 1669 LQQMTFETSFQFLKQATMMGSHDELRSPSACLVVGKVVRGGTGLFELK 1716
>gi|395853513|ref|XP_003799251.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 isoform 2
[Otolemur garnettii]
Length = 1668
Score = 808 bits (2088), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/1095 (42%), Positives = 653/1095 (59%), Gaps = 107/1095 (9%)
Query: 1 MDGWTQNASHFL-----KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTF 55
DG NA HF +AEA L QYLVPKDG PL+GLIQDH++SG ++ R F
Sbjct: 589 FDGDEMNA-HFPQNELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGTSMTTRCCF 647
Query: 56 LTRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGE 115
TR +YM LVY+ L ++ PP I KP PLWTGKQV+ST++IN+ P+D + +
Sbjct: 648 FTREQYMELVYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDHIPLN--- 704
Query: 116 LLSG---ILDKKQFGSTQYGLV----HAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVH 168
LSG I +K + ++ ++ V IR GELL G+LDK Q+GS+ YGLVH
Sbjct: 705 -LSGKAKISEKAWVKEPPRPVPGFDPDSMCESQVIIREGELLCGVLDKAQYGSSAYGLVH 763
Query: 169 AVWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLG 227
++ +G E + +L+CLA+LFT YLQ GFTLGV DILV+ + D KR +II ++ G
Sbjct: 764 CCYEIYGGETSGRVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADAKRQEIIEESTHCG 823
Query: 228 TEAACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCLPE 286
A AL LP T + + + Q+A+ Q ID ++K ++ +N IN+ C+P
Sbjct: 824 PRAVRAALNLPEATSCDEVQEKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPF 883
Query: 287 GLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEV 346
GL FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PYE
Sbjct: 884 GLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEF 943
Query: 347 SPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHY 406
+PRAGGFV GRF+TGI P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V Y
Sbjct: 944 TPRAGGFVTGRFLTGINPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQY 1003
Query: 407 DMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLS 466
D+TVRDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I K + +L +
Sbjct: 1004 DLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSKHLHEVLSRADPK 1063
Query: 467 LALLLLLTFKS-----SG----KPNFIFSPH------------------RTKFTMDLLEQ 499
AL + K SG K F+ R+ T +L+
Sbjct: 1064 KALRHIRAIKKWQSKHSGTLLRKGAFLSYSQKIEAAVKALNLQGKNQNGRSPETQQMLKM 1123
Query: 500 WYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK---GRTDASH- 555
WY+LD+++++KY+KK CP P +S ++PD +F S+SE + Y++ + + S+
Sbjct: 1124 WYELDEQSQRKYQKKAAPCPDPCLSAWRPDIYFASVSETFEKKIDDYSQEWAAQAEKSYK 1183
Query: 556 -----VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTL 610
+D+ ++ K SL +PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVTL
Sbjct: 1184 KSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTL 1243
Query: 611 GIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEW 670
GIPRLREILM+A+ IKTP M +P + K K+ L K +TR+ + +VL+K+ ++E
Sbjct: 1244 GIPRLREILMVASANIKTPMMSVPVF-NTKKALKRVKSLKKQLTRVCLGEVLQKIDVEES 1302
Query: 671 LEISPEPH--MNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQ-- 726
+ + + YQ++F F+P Y+ + ++P I+ E +F K L +I K++ +
Sbjct: 1303 FCMGEKQNKFRVYQLRFQFLPYAYYQQEKCLRPEDILHFMETRFFKLLVESIKKKSNKES 1362
Query: 727 GLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRVD----VSSDEERDEEDAVQSHKKV 782
+++N +R + D+++ G G + V ++ E + DA + +K
Sbjct: 1363 AFRSVN---TRRATQRDLDNVGGSGRSQGEEEGDEEEEGHIVDAEAEEGDADASDTKRKE 1419
Query: 783 NQEEDNDFEEP---------------EDEERM------SEREEDDNTSNIG--------- 812
QEE+ D++ ++E + +E+D+ + +
Sbjct: 1420 KQEEEVDYDSEEEGEKEEEENEDEVMQEEGHIHGKGAQEAQEQDEELAQLSILLQVTVKL 1479
Query: 813 ERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNLFEEKESKHLLKTD 872
KI F S+ V V H V Y + C L SN + E + +L T+
Sbjct: 1480 PLMKINFDMSSLV----VSLAHGAV---VYMTRGITRCLLNETVSN---KNEKELVLHTE 1529
Query: 873 GINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHL 932
GIN+ + +Y +LDL +LY NDIH MA+TYGIEAA RVI +E+K+VFAVYGI VDPRHL
Sbjct: 1530 GINLPELFKYAEVLDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHL 1589
Query: 933 SLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVM 992
SLVADYM G Y +NR GIR N S +Q+MTFE + ++QA+M G D LR+PSA ++
Sbjct: 1590 SLVADYMCFEGVYKPLNRFGIRSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPSACLV 1649
Query: 993 LGQECRQGTGLFQLR 1007
+G+ + GTGLF+L+
Sbjct: 1650 VGKVVKGGTGLFELK 1664
>gi|149036393|gb|EDL91011.1| RNA polymerase 1-4 [Rattus norvegicus]
Length = 1716
Score = 808 bits (2087), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/1130 (41%), Positives = 651/1130 (57%), Gaps = 136/1130 (12%)
Query: 1 MDGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA S +AEA L QYLVPKDG PL+GLIQDH++SGA +++R F
Sbjct: 596 FDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFF 655
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL 116
TR +YM LVY+ L ++ PP I KP PLWTGKQV+ST++IN+ P+D +
Sbjct: 656 TREQYMELVYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDYTPLN---- 711
Query: 117 LSGILDKKQFGSTQYGL----------VHAVWDTHVTIRHGELLSGILDKKQFGSTQYGL 166
L+G K + GS + ++ ++ V IR GELL G+LDK +GS+ YGL
Sbjct: 712 LTG---KAKIGSKAWVKEKPRPVPDFDPDSMCESQVIIREGELLCGVLDKAHYGSSAYGL 768
Query: 167 VHAVWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARR 225
VH ++ +G E + +L+CLA+LFT YLQ GFTLGV DILV+ D R +II ++ +
Sbjct: 769 VHCCYEIYGGETSGRVLTCLARLFTAYLQLYRGFTLGVEDILVKPNADVMRQRIIEESTQ 828
Query: 226 LGTEAACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCL 284
G A AL LP + I + Q+A+ Q ID ++K ++ +N IN+ C+
Sbjct: 829 CGPRAVRAALNLPEAASCDEIQGKWQDAHLGKDQRDFNMIDMKFKEEVNHYSNEINKACM 888
Query: 285 PEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPY 344
P GL FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PY
Sbjct: 889 PFGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPY 948
Query: 345 EVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTV 404
E +PRAGGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL +
Sbjct: 949 EFTPRAGGFVTGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVI 1008
Query: 405 HYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKK-- 462
YD+TVRDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I K + +L +
Sbjct: 1009 QYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSKHLHEVLSRAD 1068
Query: 463 ---------------HPLSLALL---LLLTFKS-----------SGKPNFIFSPHRTKFT 493
H S ALL L+F GK SP T
Sbjct: 1069 PQKVLRHFRAIKKWHHRHSSALLRKGAFLSFSQKIQAAVKALNLEGKTQNGRSPE----T 1124
Query: 494 MDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK---GR 550
+L+ W++LD+++R+KY+K+ CP P +S ++PD HF S+SE + Y++ +
Sbjct: 1125 QQMLQMWHELDEQSRRKYQKRAAPCPDPSLSVWRPDIHFASVSETFEKKIDDYSQEWAAQ 1184
Query: 551 TDASH------VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRG 604
+ SH +D+ ++ K SL +PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG
Sbjct: 1185 AEKSHNRSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRG 1244
Query: 605 DMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEK 664
+MNVTLGIPRLREILM+A+ IKTP M +P + K ++ L K +TR+ + +VL+K
Sbjct: 1245 EMNVTLGIPRLREILMVASANIKTPMMSVPVF-NTKKALRRVKSLKKQLTRVCLGEVLQK 1303
Query: 665 VKIKEWLEISPEPH--MNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAK 722
V I+E + + + Y+++F F+P Y+ + ++P I+ E +F K L AI K
Sbjct: 1304 VDIQESFCMGEKQNKFRVYELRFQFLPHAYYQQEKCLRPEDILHFMETRFFKLLMEAIKK 1363
Query: 723 R--AAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHK 780
+ A +++N ++ + DD ED G D E +E DA S
Sbjct: 1364 KNSKASAFRSVNTRRATQKDLDDTEDS-GRNRREEERDEEEEGNIVDAEAEEGDADASDT 1422
Query: 781 KVNQEE----------------------------DNDFEEPEDEERMSEREEDDNTSNIG 812
K +++ + + E +E E++++ N
Sbjct: 1423 KRKEKQEEEVDYESEEEGEEEEEEDVQEEENIKGEGAHQTHEPDEEEGSGLEEESSQNPP 1482
Query: 813 ERF-KIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKL------------------- 852
R + + ++ ++ V H+ + Y YD + +WC++
Sbjct: 1483 RRHSRPQGAEAMERRIQAVRESHSFIEDYQYDTEESLWCQVTVKLPLMKINFDMSSLVVS 1542
Query: 853 ---------------LFLPSNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIH 897
L + + E + +L T+GIN+ + +Y +LDL +LY NDIH
Sbjct: 1543 LAHNAIVYTTKGITRCLLNETINSKNEKEFVLNTEGINLPELFKYSEVLDLRRLYSNDIH 1602
Query: 898 YMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNP 957
+A+TYGIEAA RVI +E+K+VFAVYGI VDPRHLSLVADYM G Y +NR GI+ +
Sbjct: 1603 AVANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIQSSS 1662
Query: 958 SFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLR 1007
S +Q+MTFE + ++QA+M G D L++PSA +++G+ + GTGLF+L+
Sbjct: 1663 SPLQQMTFETSFQFLKQATMMGSHDELKSPSACLVVGKVVKGGTGLFELK 1712
>gi|256985188|ref|NP_033114.3| DNA-directed RNA polymerase I subunit RPA1 [Mus musculus]
gi|56405300|sp|O35134.2|RPA1_MOUSE RecName: Full=DNA-directed RNA polymerase I subunit RPA1; Short=RNA
polymerase I subunit A1; AltName: Full=DNA-directed RNA
polymerase I largest subunit; AltName: Full=DNA-directed
RNA polymerase I subunit A; AltName: Full=RNA polymerase
I 194 kDa subunit; Short=RPA194
Length = 1717
Score = 808 bits (2087), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/1130 (42%), Positives = 659/1130 (58%), Gaps = 135/1130 (11%)
Query: 1 MDGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA S +AEA L QYLVPKDG PL+GLIQDH++SGA +++R F
Sbjct: 596 FDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFF 655
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL 116
TR +YM LVY+ L ++ PP I KP PLWTGKQV+ST++IN+ P+D +
Sbjct: 656 TREQYMELVYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDYAPLN---- 711
Query: 117 LSGILDKKQFGSTQYGL----------VHAVWDTHVTIRHGELLSGILDKKQFGSTQYGL 166
LSG K + GS + ++ ++ V IR GELL G+LDK +GS+ YGL
Sbjct: 712 LSG---KAKIGSKAWVKEKPRPIPDFDPDSMCESQVIIREGELLCGVLDKAHYGSSAYGL 768
Query: 167 VHAVWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARR 225
VH ++ +G E + +L+CLA+LFT YLQ GFTLGV DILV+ D R +II ++ +
Sbjct: 769 VHCCYEIYGGETSGRVLTCLARLFTAYLQLYRGFTLGVEDILVKPNADVVRQRIIEESTQ 828
Query: 226 LGTEAACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCL 284
G +A AL LP + I + Q+A+ S Q ID ++K ++ +N IN+ C+
Sbjct: 829 CGPQAVKAALSLPETASCDEIQGKWQDAHLSKDQRDFNMIDMKFKEEVNHYSNEINKACM 888
Query: 285 PEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPY 344
P GL FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PY
Sbjct: 889 PLGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPY 948
Query: 345 EVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTV 404
E +PRAGGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL +
Sbjct: 949 EFTPRAGGFVTGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVI 1008
Query: 405 HYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKK-- 462
YD+TVRDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I K + +L +
Sbjct: 1009 QYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLAGNYEVIMKSKHLHEVLSRAD 1068
Query: 463 ---------------HPLSLALLLLLTFKSSGKP--------NFIFSPH--RTKFTMDLL 497
H S ALL F S + N S R+ T +L
Sbjct: 1069 PQKVLGHIKAIKKWHHKHSGALLRKGAFLSFSQKIQAAVKALNLKGSIQNGRSPETQQML 1128
Query: 498 EQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK---GRTDAS 554
+ WY LD+++R KY+K+ CP P +S ++PD +F S+SE + +++ + + S
Sbjct: 1129 QMWYDLDEESRWKYQKRAAPCPDPSLSVWRPDIYFASVSETFEKKIDDFSQEWAAQAERS 1188
Query: 555 H------VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
+ +D+ ++ K SL +PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNV
Sbjct: 1189 YKKSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNV 1248
Query: 609 TLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIK 668
TLGIPRLREILM+A+ IKTP M +P D K KK L K +TR+ + +VL+KV I+
Sbjct: 1249 TLGIPRLREILMVASANIKTPMMSVPVF-DTKKALKKVKSLKKRLTRVCLGEVLQKVDIQ 1307
Query: 669 EWLEISPEPH--MNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKR--A 724
E + + + Y+++F F+P Y+ + ++P I+ E +F K L AI K+
Sbjct: 1308 ESFCMGEKRNKFQVYELRFQFLPHAYYQQEKCLRPEDILHFMETRFFKLLMEAIKKKKNK 1367
Query: 725 AQGLKNMNIEQSRDQMEDDVEDDEGEG-----AEGAGAALGRVDVSSDEERDEEDAVQSH 779
A +N+N SR + D+ D E G E G + V ++ E + DA +
Sbjct: 1368 ASAFRNVN---SRRATQKDLNDTEDSGRSQREEERDEEEEGNI-VDAEAEEGDADASDTK 1423
Query: 780 KKVNQEED----------------------------NDFEEPEDEERMSEREEDDNTSNI 811
+K QEE+ + EP++EE + EE+ +
Sbjct: 1424 RKEKQEEEVDYESEEEGEEEEEEEVQEEGNIKGDGVHQGHEPDEEEHLGLEEEESSQKPP 1483
Query: 812 GERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC---------KLLFLPSNLF-- 860
+ + ++ ++ V ++ + Y YD + +WC K+ F S+L
Sbjct: 1484 RRHSRPQGAEAIKRRIQAVRESYSFIEDYQYDTEESLWCQVTVKLPLMKINFDMSSLVVS 1543
Query: 861 -----------------------EEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIH 897
+ E + +L T+GIN+ + +Y +LDL +LY NDIH
Sbjct: 1544 LAHKAIVYTTKGITRCLLNETTNSKNEKELVLNTEGINLPELFKYSEILDLRRLYSNDIH 1603
Query: 898 YMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNP 957
MA+TYGIEAA RVI +E+K+VFAVYGI VDPRHLSLVADYM G Y +NR GI+ +
Sbjct: 1604 AMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIQSSS 1663
Query: 958 SFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLR 1007
S +Q+MTFE + ++QA+M G D L++PSA +++G+ + GTGLF+L+
Sbjct: 1664 SPLQQMTFETSFQFLKQATMMGSHDELKSPSACLVVGKVVKGGTGLFELK 1713
>gi|148666542|gb|EDK98958.1| RNA polymerase 1-4 [Mus musculus]
Length = 1717
Score = 808 bits (2086), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/1130 (42%), Positives = 659/1130 (58%), Gaps = 135/1130 (11%)
Query: 1 MDGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA S +AEA L QYLVPKDG PL+GLIQDH++SGA +++R F
Sbjct: 596 FDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFF 655
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL 116
TR +YM LVY+ L ++ PP I KP PLWTGKQV+ST++IN+ P+D +
Sbjct: 656 TREQYMELVYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDYAPLN---- 711
Query: 117 LSGILDKKQFGSTQYGL----------VHAVWDTHVTIRHGELLSGILDKKQFGSTQYGL 166
LSG K + GS + ++ ++ V IR GELL G+LDK +GS+ YGL
Sbjct: 712 LSG---KAKIGSKAWVKEKPRPIPDFDPDSMCESQVIIREGELLCGVLDKAHYGSSAYGL 768
Query: 167 VHAVWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARR 225
VH ++ +G E + +L+CLA+LFT YLQ GFTLGV DILV+ D R +II ++ +
Sbjct: 769 VHCCYEIYGGETSGRVLTCLARLFTAYLQLYRGFTLGVEDILVKPNADVVRQRIIEESTQ 828
Query: 226 LGTEAACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCL 284
G +A AL LP + I + Q+A+ S Q ID ++K ++ +N IN+ C+
Sbjct: 829 CGPQAVKAALSLPETASCDEIQGKWQDAHLSKDQRDFNMIDMKFKEEVNHYSNEINKACM 888
Query: 285 PEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPY 344
P GL FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PY
Sbjct: 889 PLGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPY 948
Query: 345 EVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTV 404
E +PRAGGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL +
Sbjct: 949 EFTPRAGGFVTGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVI 1008
Query: 405 HYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKK-- 462
YD+TVRDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I K + +L +
Sbjct: 1009 QYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLAGNYEVIMKSKHLHEVLSRAD 1068
Query: 463 ---------------HPLSLALLLLLTFKSSGKP--------NFIFSPH--RTKFTMDLL 497
H S ALL F S + N S R+ T +L
Sbjct: 1069 PQKVLGHIKAIKKWHHKHSGALLRKGAFLSFSQKIQAAVKALNLKGSIQNGRSPETQQML 1128
Query: 498 EQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK---GRTDAS 554
+ WY LD+++R KY+K+ CP P +S ++PD +F S+SE + +++ + + S
Sbjct: 1129 QMWYDLDEESRWKYQKRAAPCPDPSLSVWRPDIYFASVSETFEKKIDDFSQEWAAQAERS 1188
Query: 555 H------VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
+ +D+ ++ K SL +PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNV
Sbjct: 1189 YKKSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNV 1248
Query: 609 TLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIK 668
TLGIPRLREILM+A+ IKTP M +P D K KK L K +TR+ + +VL+KV I+
Sbjct: 1249 TLGIPRLREILMVASANIKTPMMSVPVF-DTKKALKKVKSLKKRLTRVCLGEVLQKVDIQ 1307
Query: 669 EWLEISPEPH--MNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKR--A 724
E + + + Y+++F F+P Y+ + ++P I+ E +F K L AI K+
Sbjct: 1308 ESFCMGEKRNKFQVYELRFQFLPHAYYQQEKCLRPEDILHFMETRFFKLLMEAIKKKKNK 1367
Query: 725 AQGLKNMNIEQSRDQMEDDVEDDEGEG-----AEGAGAALGRVDVSSDEERDEEDAVQSH 779
A +N+N SR + D+ D E G E G + V ++ E + DA +
Sbjct: 1368 ASAFRNVN---SRRATQKDLNDTEDSGRSQREEERDEEEEGNI-VDAEAEEGDADASDTK 1423
Query: 780 KKVNQEED----------------------------NDFEEPEDEERMSEREEDDNTSNI 811
+K QEE+ + EP++EE + EE+ +
Sbjct: 1424 RKEKQEEEVDYESEEEGEEEEEEEVQEEGNIKGDGVHQGHEPDEEEHLGLEEEESSQKPP 1483
Query: 812 GERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC---------KLLFLPSNLF-- 860
+ + ++ ++ V ++ + Y YD + +WC K+ F S+L
Sbjct: 1484 RRHSRPQGAEAIKRRIQAVRESYSFIEDYQYDTEESLWCQVTVKLPLMKINFDMSSLVVS 1543
Query: 861 -----------------------EEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIH 897
+ E + +L T+GIN+ + +Y +LDL +LY NDIH
Sbjct: 1544 LAHKAIVYTTKGITRCLLNETTNSKNEKELVLNTEGINLPELFKYSEILDLRRLYSNDIH 1603
Query: 898 YMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNP 957
MA+TYGIEAA RVI +E+K+VFAVYGI VDPRHLSLVADYM G Y +NR GI+ +
Sbjct: 1604 AMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIQSSS 1663
Query: 958 SFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLR 1007
S +Q+MTFE + ++QA+M G D L++PSA +++G+ + GTGLF+L+
Sbjct: 1664 SPLQQMTFETSFQFLKQATMMGSHDELKSPSACLVVGKVVKGGTGLFELK 1713
>gi|292620699|ref|XP_001922839.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Danio rerio]
Length = 1693
Score = 808 bits (2086), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/1108 (41%), Positives = 651/1108 (58%), Gaps = 103/1108 (9%)
Query: 2 DGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLT 57
DG NA S +AEA L++ QYLVPKDG PL+GLIQDH++SG +++R F T
Sbjct: 583 DGDEMNAHFPQSELSRAEAYTLVSTDQQYLVPKDGKPLAGLIQDHMVSGTSMTIRGCFFT 642
Query: 58 RAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR--HGE 115
R +Y LVY+ L ++ LPPT+ KP+ LWTGKQV+ST+++N+ P++ + +
Sbjct: 643 RDQYTALVYRGLTDKIGRVKLLPPTLIKPVLLWTGKQVVSTLLLNVIPENSIPLNLTGKA 702
Query: 116 LLSGILDKKQFGSTQYGLV-HAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTH 174
+ G K+ G V ++ ++ V IR GELL G+LDK +GS+ YGLVH ++ +
Sbjct: 703 KIPGKAWVKESPRPVPGYVPESMCESQVVIRQGELLMGVLDKAHYGSSAYGLVHCCYELY 762
Query: 175 GAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGTEAACN 233
G E + LLSCLA+LFT YLQ GFTLGV DILV+ +++R KII K+ G++A
Sbjct: 763 GGETSGKLLSCLARLFTAYLQLYRGFTLGVEDILVKDGANKQRKKIIKKSVTCGSKALQA 822
Query: 234 ALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCLPEGLIEPF 292
A LP + + Q+A+ +I Q +D ++K +++V NNIN+VC+P GL F
Sbjct: 823 AFNLPASAEDTEARERWQDAHLNIDQRDFNMVDLKFKEEVNQVNNNINKVCMPLGLHRSF 882
Query: 293 PANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGG 352
P NNLQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PYE PR+GG
Sbjct: 883 PENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMPSGKSLPCFQPYEPQPRSGG 942
Query: 353 FVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRD 412
FV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V YD+TVRD
Sbjct: 943 FVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRD 1002
Query: 413 SDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLAL--- 469
SD S++Q LYGEDGLD+ K Q+L +QF F++DN + I K + +L K AL
Sbjct: 1003 SDGSVVQFLYGEDGLDIPKTQFLQPRQFPFIKDNYEVIRKSKCLDEVLAKMDPVAALNHF 1062
Query: 470 -------------------LLLLTFKSSGKPNFIFSPH-----RTKFTMDLLEQWYQLDD 505
LL + K K H R + T+ L+E+W LD+
Sbjct: 1063 KAIKKWKAKHEHASPRDGAFLLFSQKKMSKLKAQVEGHELVNGREEATLQLIERWRALDE 1122
Query: 506 KARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYT---------KGRTDASHV 556
R +Y KK CP+P + ++PD FGS+SE V Y ++ +
Sbjct: 1123 SGRMRYSKKTSHCPEPCLGLYRPDISFGSVSETFDSIVESYLNQFNIKQEFSASSETTDA 1182
Query: 557 DKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLR 616
D+ +++ K +L +PGE VG++AAQSIGEPSTQMTLNTFHFAGRG+MNVTLGIPRLR
Sbjct: 1183 DRLRNLLQLKWQRALCDPGEAVGLVAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLR 1242
Query: 617 EILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPE 676
EIL++A+ IKTP M IP + + L K+ L K +TR+ +++VL KV + E + +
Sbjct: 1243 EILLVASSNIKTPMMSIPVVMNKKAL-KQVKTLRKKITRVCLSEVLHKVNVIESFRMPKK 1301
Query: 677 PHMN---YQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNI 733
+ +++ F F+P Y+ + P +I+ + E+ F + L AI K A+ +
Sbjct: 1302 ETLKSRVFKITFHFLPPERYQQDKLLNPDEILHYMEQTFFRMLLEAIKKLTAKLAAISLV 1361
Query: 734 EQSRDQMEDDVED--DEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEE----- 786
E R + D+ D D G E G + D+E +E DA + K +++
Sbjct: 1362 ETRRATVNDNDRDTSDGGADREDNGGEDAENERIVDDEANEGDADATDSKRKEKQEEEVD 1421
Query: 787 ----------DNDFEEPEDEERMSEREEDDNTSNIGERFKIEFRDST---NVFVKDVVNQ 833
D + EE +E+ S+ ++ ++ +R E + +V + V+
Sbjct: 1422 YESEEGEEGSDQEQEEVAEEQEASQEVSEEGSTESQQRVNSEQPKGSSQGSVRINSVLQL 1481
Query: 834 HNIVHKYSYDKKNHMWCKL-LFLPSN----------------------------LFEEKE 864
+ Y YD K +WC+L L +P L E
Sbjct: 1482 SAAIEDYKYDTKKGLWCELTLVMPITKVHFDLTSVVVKQAQNAVIMETKGITRCLLNEVT 1541
Query: 865 SKH-----LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNV 919
K +L T+GIN++ + +Y +LDL +LY N++H MASTYGIE A RVI +E+K+V
Sbjct: 1542 RKDGSKEIMLNTEGINIHEMFKYADILDLKRLYSNEVHAMASTYGIEVALRVIEKEIKDV 1601
Query: 920 FAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQG 979
FAVYGIEVDPRHLSLVADYM G Y +NR GI+ N S +Q+MTFE + ++QA+M G
Sbjct: 1602 FAVYGIEVDPRHLSLVADYMCFEGVYKPLNRFGIQSNSSPLQQMTFETSFKFLKQATMLG 1661
Query: 980 REDSLRAPSARVMLGQECRQGTGLFQLR 1007
D L +PSA +++G+ + GTG+F L+
Sbjct: 1662 SYDKLSSPSACLVVGKVVKGGTGIFDLK 1689
>gi|410216876|gb|JAA05657.1| polymerase (RNA) I polypeptide A, 194kDa [Pan troglodytes]
gi|410255060|gb|JAA15497.1| polymerase (RNA) I polypeptide A, 194kDa [Pan troglodytes]
gi|410306946|gb|JAA32073.1| polymerase (RNA) I polypeptide A, 194kDa [Pan troglodytes]
Length = 1720
Score = 807 bits (2085), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/1136 (41%), Positives = 655/1136 (57%), Gaps = 139/1136 (12%)
Query: 2 DGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLT 57
DG NA S +AEA L QYLVPKDG PL+GLIQDH++SGA ++ R F T
Sbjct: 590 DGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFT 649
Query: 58 RAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELL 117
R +YM LVY+ L ++ L P+I KP LWTGKQV+ST++IN+ P+D + + L
Sbjct: 650 REQYMELVYRGLTDKVGRVKLLSPSILKPFALWTGKQVVSTLLINIIPEDHIPLN----L 705
Query: 118 SG---ILDKKQFGSTQYGLV----HAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAV 170
SG I K T + ++ ++ V IR GELL G+LDK +GS+ YGLVH
Sbjct: 706 SGKAKITGKAWVKETPQSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCC 765
Query: 171 WDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGTE 229
++ +G E + +L+CLA+LFT YLQ GFTLGV DILV+ + D KR +II ++ G +
Sbjct: 766 YEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGPQ 825
Query: 230 AACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCLPEGL 288
A AL LP + + + Q+A+ Q ID ++K ++ +N IN+ C+P GL
Sbjct: 826 AVRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGL 885
Query: 289 IEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSP 348
FP N+LQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PYE +P
Sbjct: 886 HRQFPENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTP 945
Query: 349 RAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDM 408
RAGGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V YD+
Sbjct: 946 RAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDL 1005
Query: 409 TVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLA 468
TVRDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I + + +L + A
Sbjct: 1006 TVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHLHEVLSRADPKKA 1065
Query: 469 LLLLLTFK--SSGKPNFIF-------------------------SPHRTKFTMDLLEQWY 501
L K S PN + R+ T ++L WY
Sbjct: 1066 LRHFRAVKKWQSKHPNTLLRRGAFLSYSQKIQEAVKALKLESENRNGRSPGTQEMLRMWY 1125
Query: 502 QLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK---GRTDASH--- 555
+LD+++R+KY+KK ACP P +S ++PD +F S+SE V Y++ +T+ S+
Sbjct: 1126 ELDEESRRKYQKKAAACPDPSLSVWRPDIYFASVSETFETKVDDYSQEWAAQTEKSYEKS 1185
Query: 556 ---VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGI 612
+D+ ++ K SL PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVTLGI
Sbjct: 1186 ELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGI 1245
Query: 613 PRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKE--W 670
PRLREILM+A+ IKTP M +P L + K K+ L K +TR+ + +VL+K+ ++E
Sbjct: 1246 PRLREILMVASANIKTPMMRVPVL-NTKKALKRVKSLKKQLTRVCLGEVLQKIDVQESFC 1304
Query: 671 LEISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKR--AAQGL 728
+E YQ++F F+P Y+ + ++P I+ E +F K L +I K+ A
Sbjct: 1305 MEEKQNKFQVYQLRFQFLPHAYYQQEKCLRPEDILHFMETRFFKLLMESIKKKNNKASTF 1364
Query: 729 KNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRVD-----VSSDEERDEEDAVQSHKKVN 783
+N+N +R + D+ D+ GE G G + V ++ E + DA + +K
Sbjct: 1365 RNVN---TRRATQRDL-DNTGELGRSRGEQEGDEEEEGHIVDAEAEEGDADASDAKRKEK 1420
Query: 784 Q-------------------------------EEDNDFEEPEDEERMSEREEDDNTSNIG 812
Q E + +DEE EED + +
Sbjct: 1421 QEEEVDYESEEEEEREGEENDDEDMEEERNPHREGARKTQEQDEEVGLGTEEDPSLPALL 1480
Query: 813 ERFK-------IEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC---------KLLFLP 856
+ + + ++ V+ V H + Y YD + +WC K+ F
Sbjct: 1481 TQPRKPTHSQEPQGPEAMERRVQAVREIHPFIDDYQYDTEESLWCQVTVKLPLMKINFDM 1540
Query: 857 SNLF-------------------------EEKESKHLLKTDGINVNFISQYRHLLDLNKL 891
S+L + E + +L T+GIN+ + +Y +LDL +L
Sbjct: 1541 SSLVVSLAHGAVIYATKGITRCLLNETTNNKNEKELVLNTEGINLPELFKYAEVLDLRRL 1600
Query: 892 YVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRN 951
Y NDIH MA+TYGIEAA RVI +E+K+VFAVYGI VDPRHLSLVADYM G Y +NR
Sbjct: 1601 YSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRF 1660
Query: 952 GIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLR 1007
GIR N S +Q+MTFE + ++QA+M G D LR+PSA +++G+ + GTGLF+L+
Sbjct: 1661 GIRSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVKGGTGLFELK 1716
>gi|74184497|dbj|BAE27874.1| unnamed protein product [Mus musculus]
Length = 1717
Score = 807 bits (2085), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/1130 (42%), Positives = 659/1130 (58%), Gaps = 135/1130 (11%)
Query: 1 MDGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA S +AEA L QYLVPKDG PL+GLIQDH++SGA +++R F
Sbjct: 596 FDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANITIRGCFF 655
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL 116
TR +YM LVY+ L ++ PP I KP PLWTGKQV+ST++IN+ P+D +
Sbjct: 656 TREQYMELVYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDYAPLN---- 711
Query: 117 LSGILDKKQFGSTQYGL----------VHAVWDTHVTIRHGELLSGILDKKQFGSTQYGL 166
LSG K + GS + ++ ++ V IR GELL G+LDK +GS+ YGL
Sbjct: 712 LSG---KAKIGSKAWVKEKPRPIPDFDPDSMCESQVIIREGELLCGVLDKAHYGSSAYGL 768
Query: 167 VHAVWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARR 225
VH ++ +G E + +L+CLA+LFT YLQ GFTLGV DILV+ D R +II ++ +
Sbjct: 769 VHCCYEIYGGETSGRVLTCLARLFTAYLQLYRGFTLGVEDILVKPNADVVRQRIIEESTQ 828
Query: 226 LGTEAACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCL 284
G +A AL LP + I + Q+A+ S Q ID ++K ++ +N IN+ C+
Sbjct: 829 CGPQAVKAALSLPETASCDEIQGKWQDAHLSKDQRDFNMIDMKFKEEVNHYSNEINKACM 888
Query: 285 PEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPY 344
P GL FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PY
Sbjct: 889 PLGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPY 948
Query: 345 EVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTV 404
E +PRAGGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL +
Sbjct: 949 EFTPRAGGFVTGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVI 1008
Query: 405 HYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKK-- 462
YD+TVRDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I K + +L +
Sbjct: 1009 QYDLTVRDSDDSVVQFLYGEDGLDIPKTQFLQPKQFPFLAGNYEVIMKSKHLHEVLSRAD 1068
Query: 463 ---------------HPLSLALLLLLTFKSSGKP--------NFIFSPH--RTKFTMDLL 497
H S ALL F S + N S R+ T +L
Sbjct: 1069 PQKVLGHIKAIKKWHHKHSGALLRKGAFLSFSQKIQAAVKALNLKGSIQNGRSPETQQML 1128
Query: 498 EQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK---GRTDAS 554
+ WY LD+++R KY+K+ CP P +S ++PD +F S+SE + +++ + + S
Sbjct: 1129 QMWYDLDEESRWKYQKRAAPCPDPSLSVWRPDIYFASVSETFEKKIDDFSQEWAAQAERS 1188
Query: 555 H------VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
+ +D+ ++ K SL +PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNV
Sbjct: 1189 YKKSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNV 1248
Query: 609 TLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIK 668
TLGIPRLREILM+A+ IKTP M +P D K KK L K +TR+ + +VL+KV I+
Sbjct: 1249 TLGIPRLREILMVASANIKTPMMSVPVF-DTKKALKKVKSLKKRLTRVCLGEVLQKVDIQ 1307
Query: 669 EWLEISPEPH--MNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKR--A 724
E + + + Y+++F F+P Y+ + ++P I+ E +F K L AI K+
Sbjct: 1308 ESFCMGEKRNKFQVYELRFQFLPHAYYQQEKCLRPEDILHFMETRFFKLLMEAIKKKKNK 1367
Query: 725 AQGLKNMNIEQSRDQMEDDVEDDEGEG-----AEGAGAALGRVDVSSDEERDEEDAVQSH 779
A +N+N SR + D+ D E G E G + V ++ E + DA +
Sbjct: 1368 ASAFRNVN---SRRATQKDLNDTEDSGRSQREEERDEEEEGNI-VDAEAEEGDADASDTK 1423
Query: 780 KKVNQEED----------------------------NDFEEPEDEERMSEREEDDNTSNI 811
+K QEE+ + EP++EE + EE+ +
Sbjct: 1424 RKEKQEEEVDYESEEEGEEEEEEEVQEEGNIKGDGVHQGHEPDEEEHLGLEEEESSQKPP 1483
Query: 812 GERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC---------KLLFLPSNLF-- 860
+ + ++ ++ V ++ + Y YD + +WC K+ F S+L
Sbjct: 1484 RRHSRPQGAEAIKRRIQAVRESYSFIEDYQYDTEESLWCQVTVKLPLMKINFDMSSLVVS 1543
Query: 861 -----------------------EEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIH 897
+ E + +L T+GIN+ + +Y +LDL +LY NDIH
Sbjct: 1544 LAHKAIVYTTKGITRCLLNETTNSKNEKELVLNTEGINLPELFKYSEILDLRRLYSNDIH 1603
Query: 898 YMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNP 957
MA+TYGIEAA RVI +E+K+VFAVYGI VDPRHLSLVADYM G Y +NR GI+ +
Sbjct: 1604 AMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIQSSS 1663
Query: 958 SFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLR 1007
S +Q+MTFE + ++QA+M G D L++PSA +++G+ + GTGLF+L+
Sbjct: 1664 SPLQQMTFETSFQFLKQATMMGSHDELKSPSACLVVGKVVKGGTGLFELK 1713
>gi|410353619|gb|JAA43413.1| polymerase (RNA) I polypeptide A, 194kDa [Pan troglodytes]
Length = 1720
Score = 807 bits (2085), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/1136 (41%), Positives = 655/1136 (57%), Gaps = 139/1136 (12%)
Query: 2 DGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLT 57
DG NA S +AEA L QYLVPKDG PL+GLIQDH++SGA ++ R F T
Sbjct: 590 DGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFT 649
Query: 58 RAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELL 117
R +YM LVY+ L ++ L P+I KP LWTGKQV+ST++IN+ P+D + + L
Sbjct: 650 REQYMELVYRGLTDKVGRVKLLSPSILKPFALWTGKQVVSTLLINIIPEDHIPLN----L 705
Query: 118 SG---ILDKKQFGSTQYGLV----HAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAV 170
SG I K T + ++ ++ V IR GELL G+LDK +GS+ YGLVH
Sbjct: 706 SGKAKITGKAWVKETPQSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCC 765
Query: 171 WDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGTE 229
++ +G E + +L+CLA+LFT YLQ GFTLGV DILV+ + D KR +II ++ G +
Sbjct: 766 YEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGPQ 825
Query: 230 AACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCLPEGL 288
A AL LP + + + Q+A+ Q ID ++K ++ +N IN+ C+P GL
Sbjct: 826 AVRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGL 885
Query: 289 IEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSP 348
FP N+LQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PYE +P
Sbjct: 886 HRQFPENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTP 945
Query: 349 RAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDM 408
RAGGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V YD+
Sbjct: 946 RAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDL 1005
Query: 409 TVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLA 468
TVRDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I + + +L + A
Sbjct: 1006 TVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHLHEVLSRADPKKA 1065
Query: 469 LLLLLTFK--SSGKPNFIF-------------------------SPHRTKFTMDLLEQWY 501
L K S PN + R+ T ++L WY
Sbjct: 1066 LRHFRAVKKWQSKHPNTLLRRGAFLSYSQKIQEAVKALKLESENRNGRSPGTQEMLRMWY 1125
Query: 502 QLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK---GRTDASH--- 555
+LD+++R+KY+KK ACP P +S ++PD +F S+SE V Y++ +T+ S+
Sbjct: 1126 ELDEESRRKYQKKAAACPDPSLSVWRPDIYFASVSETFETKVDDYSQEWAAQTEKSYEKS 1185
Query: 556 ---VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGI 612
+D+ ++ K SL PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVTLGI
Sbjct: 1186 ELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGI 1245
Query: 613 PRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKE--W 670
PRLREILM+A+ IKTP M +P L + K K+ L K +TR+ + +VL+K+ ++E
Sbjct: 1246 PRLREILMVASANIKTPMMRVPVL-NTKKALKRVKSLKKQLTRVCLGEVLQKIDVQESFC 1304
Query: 671 LEISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKR--AAQGL 728
+E YQ++F F+P Y+ + ++P I+ E +F K L +I K+ A
Sbjct: 1305 MEEKQNKFQVYQLRFQFLPHAYYQQEKCLRPEDILHFMETRFFKLLMESIKKKNNKASTF 1364
Query: 729 KNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRVD-----VSSDEERDEEDAVQSHKKVN 783
+N+N +R + D+ D+ GE G G + V ++ E + DA + +K
Sbjct: 1365 RNVN---TRRATQRDL-DNTGELGRSRGEQEGDEEEEGHIVDAEAEEGDADASDAKRKEK 1420
Query: 784 Q-------------------------------EEDNDFEEPEDEERMSEREEDDNTSNIG 812
Q E + +DEE EED + +
Sbjct: 1421 QEEEVDYESEEEEEREGEENDDEDMEEERNPHREGARKTQEQDEEVGLGTEEDPSLPALL 1480
Query: 813 ERFK-------IEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC---------KLLFLP 856
+ + + ++ V+ V H + Y YD + +WC K+ F
Sbjct: 1481 TQPRKPTHSQEPQGPEAMERRVQAVREIHPFIDDYQYDTEESLWCQVTVKLPLMKINFDM 1540
Query: 857 SNLF-------------------------EEKESKHLLKTDGINVNFISQYRHLLDLNKL 891
S+L + E + +L T+GIN+ + +Y +LDL +L
Sbjct: 1541 SSLVVSLAHGAVIYATKGITRCLLNETTNNKNEKELVLNTEGINLPELFKYAEVLDLRRL 1600
Query: 892 YVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRN 951
Y NDIH MA+TYGIEAA RVI +E+K+VFAVYGI VDPRHLSLVADYM G Y +NR
Sbjct: 1601 YSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRF 1660
Query: 952 GIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLR 1007
GIR N S +Q+MTFE + ++QA+M G D LR+PSA +++G+ + GTGLF+L+
Sbjct: 1661 GIRSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVKGGTGLFELK 1716
>gi|31753226|gb|AAH53744.1| Polymerase (RNA) I polypeptide A [Mus musculus]
Length = 1717
Score = 806 bits (2083), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/1130 (42%), Positives = 658/1130 (58%), Gaps = 135/1130 (11%)
Query: 1 MDGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA S +AEA L QYLVPKDG PL+GLIQDH++SGA +++R F
Sbjct: 596 FDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFF 655
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL 116
TR +YM LVY+ L ++ PP I KP PLWTGKQV+ST++IN+ P+D +
Sbjct: 656 TREQYMELVYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDYAPLN---- 711
Query: 117 LSGILDKKQFGSTQYGL----------VHAVWDTHVTIRHGELLSGILDKKQFGSTQYGL 166
LSG K + GS + ++ ++ V IR GELL G+LDK +GS+ YGL
Sbjct: 712 LSG---KAKIGSKAWVKEKPRPIPDFDPDSMCESQVIIREGELLCGVLDKAHYGSSAYGL 768
Query: 167 VHAVWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARR 225
VH ++ +G E + +L+CLA+LFT YLQ GFTLGV DILV+ D R II ++ +
Sbjct: 769 VHCCYEIYGGETSGRVLTCLARLFTAYLQLYRGFTLGVEDILVKPNADVVRQHIIEESTQ 828
Query: 226 LGTEAACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCL 284
G +A AL LP + I + Q+A+ S Q ID ++K ++ +N IN+ C+
Sbjct: 829 CGPQAVKAALSLPETASCDEIQGKWQDAHLSKDQRDFNMIDMKFKEEVNHYSNEINKACM 888
Query: 285 PEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPY 344
P GL FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PY
Sbjct: 889 PLGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPY 948
Query: 345 EVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTV 404
E +PRAGGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL +
Sbjct: 949 EFTPRAGGFVTGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVI 1008
Query: 405 HYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKK-- 462
YD+TVRDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I K + +L +
Sbjct: 1009 QYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLAGNYEVIMKSKHLHEVLSRAD 1068
Query: 463 ---------------HPLSLALLLLLTFKSSGKP--------NFIFSPH--RTKFTMDLL 497
H S ALL F S + N S R+ T +L
Sbjct: 1069 PQKVLGHIKAIKKWHHKHSGALLRKGAFLSFSQKIQAAVKALNLKGSIQNGRSPETQQML 1128
Query: 498 EQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK---GRTDAS 554
+ WY LD+++R KY+K+ CP P +S ++PD +F S+SE + +++ + + S
Sbjct: 1129 QMWYDLDEESRWKYQKRAAPCPDPSLSVWRPDIYFASVSETFEKKIDDFSQEWAAQAERS 1188
Query: 555 H------VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
+ +D+ ++ K SL +PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNV
Sbjct: 1189 YKKSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNV 1248
Query: 609 TLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIK 668
TLGIPRLREILM+A+ IKTP M +P D K KK L K +TR+ + +VL+KV I+
Sbjct: 1249 TLGIPRLREILMVASANIKTPMMSVPVF-DTKKALKKVKSLKKRLTRVCLGEVLQKVDIQ 1307
Query: 669 EWLEISPEPH--MNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKR--A 724
E + + + Y+++F F+P Y+ + ++P I+ E +F K L AI K+
Sbjct: 1308 ESFCMGEKRNKFQVYELRFQFLPHAYYQQEKCLRPEDILHFMETRFFKLLMEAIKKKKNK 1367
Query: 725 AQGLKNMNIEQSRDQMEDDVEDDEGEG-----AEGAGAALGRVDVSSDEERDEEDAVQSH 779
A +N+N SR + D+ D E G E G + V ++ E + DA +
Sbjct: 1368 ASAFRNVN---SRRATQKDLNDTEDSGRSQREEERDEEEEGNI-VDAEAEEGDADASDTK 1423
Query: 780 KKVNQEED----------------------------NDFEEPEDEERMSEREEDDNTSNI 811
+K QEE+ + EP++EE + EE+ +
Sbjct: 1424 RKEKQEEEVDYESEEEGEEEEEEEVQEEGNIKGDGVHQGHEPDEEEHLGLEEEESSQKPP 1483
Query: 812 GERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC---------KLLFLPSNLF-- 860
+ + ++ ++ V ++ + Y YD + +WC K+ F S+L
Sbjct: 1484 RRHSRPQGAEAIKRRIQAVRESYSFIEDYQYDTEESLWCQVTVKLPLMKINFDMSSLVVS 1543
Query: 861 -----------------------EEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIH 897
+ E + +L T+GIN+ + +Y +LDL +LY NDIH
Sbjct: 1544 LAHKAIVYTTKGITRCLLNETTNSKNEKELVLNTEGINLPELFKYSEILDLRRLYSNDIH 1603
Query: 898 YMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNP 957
MA+TYGIEAA RVI +E+K+VFAVYGI VDPRHLSLVADYM G Y +NR GI+ +
Sbjct: 1604 AMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIQSSS 1663
Query: 958 SFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLR 1007
S +Q+MTFE + ++QA+M G D L++PSA +++G+ + GTGLF+L+
Sbjct: 1664 SPLQQMTFETSFQFLKQATMMGSHDELKSPSACLVVGKVVKGGTGLFELK 1713
>gi|13929086|ref|NP_113960.1| DNA-directed RNA polymerase I subunit RPA1 [Rattus norvegicus]
gi|3914802|sp|O54889.1|RPA1_RAT RecName: Full=DNA-directed RNA polymerase I subunit RPA1; Short=RNA
polymerase I subunit A1; AltName: Full=DNA-directed RNA
polymerase I largest subunit; AltName: Full=DNA-directed
RNA polymerase I subunit A; AltName: Full=RNA polymerase
I 194 kDa subunit; Short=A194; Short=RPA194
gi|2739050|gb|AAB94601.1| RNA polymerase I 194 kDa subunit [Rattus norvegicus]
Length = 1716
Score = 806 bits (2082), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/1131 (41%), Positives = 653/1131 (57%), Gaps = 138/1131 (12%)
Query: 1 MDGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA S +AEA L QYLVPKDG PL+GLIQDH++SGA +++R F
Sbjct: 596 FDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFF 655
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL 116
TR +YM LVY+ L ++ PP I KP PLWTGKQV+ST++IN+ P+D +
Sbjct: 656 TREQYMELVYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDYTPLN---- 711
Query: 117 LSGILDKKQFGSTQYGL----------VHAVWDTHVTIRHGELLSGILDKKQFGSTQYGL 166
L+G K + GS + ++ ++ V IR GELL G+LDK +GS+ YGL
Sbjct: 712 LTG---KAKIGSKAWVKEKPRPVPDFDPDSMCESQVIIREGELLCGVLDKAHYGSSAYGL 768
Query: 167 VHAVWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARR 225
VH ++ +G E + +L+CLA+LFT YLQ GFTLGV DILV+ D R +II ++ +
Sbjct: 769 VHCCYEIYGGETSGRVLTCLARLFTAYLQLYRGFTLGVEDILVKPNADVMRQRIIEESTQ 828
Query: 226 LGTEAACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCL 284
G A AL LP + I + Q+A Q ID ++K ++ +N IN+ C+
Sbjct: 829 CGPRAVRAALNLPEAASCDEIQGKWQDAIWRKDQRDFNMIDMKFKEEVNHYSNEINKACM 888
Query: 285 PEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPY 344
P GL FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PY
Sbjct: 889 PFGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPY 948
Query: 345 EVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTV 404
E +PRAGGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL +
Sbjct: 949 EFTPRAGGFVTGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVI 1008
Query: 405 HYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKK-- 462
YD+TVRDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I K + +L +
Sbjct: 1009 QYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSKHLHEVLSRAD 1068
Query: 463 ---------------HPLSLALL---LLLTFKS-----------SGKPNFIFSPHRTKFT 493
H S ALL L+F GK SP T
Sbjct: 1069 PQKVLRHFRAIKKWHHRHSSALLRKGAFLSFSQKIQAAVKALNLEGKTQNGRSPE----T 1124
Query: 494 MDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK---GR 550
+L+ W++LD+++R+KY+K+ CP P +S ++PD HF S+SE + Y++ +
Sbjct: 1125 QQMLQMWHELDEQSRRKYQKRAAPCPDPSLSVWRPDIHFASVSETFEKKIDDYSQEWAAQ 1184
Query: 551 TDASH------VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRG 604
+ SH +D+ ++ K SL +PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG
Sbjct: 1185 AEKSHNRSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRG 1244
Query: 605 DMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEK 664
+MNVTLGIPRLREILM+A+ IKTP M +P + K ++ L K +TR+ + +VL+K
Sbjct: 1245 EMNVTLGIPRLREILMVASANIKTPMMSVPVF-NTKKALRRVKSLKKQLTRVCLGEVLQK 1303
Query: 665 VKIKEWLEISPEPH--MNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAK 722
V I+E + + + Y+++F F+P Y+ + ++P I+ E +F K L AI K
Sbjct: 1304 VDIQESFCMGEKQNKFRVYELRFQFLPHAYYQQEKCLRPEDILHFMETRFFKLLMEAIKK 1363
Query: 723 R--AAQGLKNMNIEQSRDQMEDDVEDD--EGEGAEGAGAALGRVDVSSDEERDEEDAVQS 778
+ A +++N ++ + DD ED E G + V ++ E + DA +
Sbjct: 1364 KNSKASAFRSVNTRRATQKDLDDTEDSGRNRREEERDEEEEGNI-VDAEAEEGDADASDT 1422
Query: 779 HKKVNQ----------------------------EEDNDFEEPEDEERMSEREEDDNTSN 810
+K Q E + EP DEE S EE+ + +
Sbjct: 1423 KRKEKQEEEVDYESEEEGEEEEEEDVQEEENIKGEGAHQTHEP-DEEEGSGLEEESSQNP 1481
Query: 811 IGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKL------------------ 852
+ + ++ ++ V H+ + Y YD + +WC++
Sbjct: 1482 PCRHSRPQGAEAMERRIQAVRESHSFIEDYQYDTEESLWCQVTVKLPLMKINFDMSSLVV 1541
Query: 853 ----------------LFLPSNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDI 896
L + + E + +L T+GIN+ + +Y +LDL +LY NDI
Sbjct: 1542 SLAHNAIVYTTKGITRCLLNETINSKNEKEFVLNTEGINLPELFKYSEVLDLRRLYSNDI 1601
Query: 897 HYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLN 956
H +A+TYGIEAA RVI +E+K+VFAVYGI VDPRHLSLVADYM G Y +NR GI+ +
Sbjct: 1602 HAVANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIQSS 1661
Query: 957 PSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLR 1007
S +Q+MTFE + ++QA+M G D L++PSA +++G+ + GTGLF+L+
Sbjct: 1662 SSPLQQMTFETSFQFLKQATMMGSHDELKSPSACLVVGKVVKGGTGLFELK 1712
>gi|2330007|gb|AAB66718.1| RNA polymerase I largest subunit [Mus musculus]
Length = 1717
Score = 806 bits (2081), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 475/1130 (42%), Positives = 658/1130 (58%), Gaps = 135/1130 (11%)
Query: 1 MDGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA S +AEA L QYLVPKDG PL+GLIQDH++SGA +++R F
Sbjct: 596 FDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFF 655
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL 116
TR +YM LVY+ L ++ PP I KP PLWTGKQV+ST++IN+ P+D +
Sbjct: 656 TREQYMELVYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDYAPLN---- 711
Query: 117 LSGILDKKQFGSTQYGL----------VHAVWDTHVTIRHGELLSGILDKKQFGSTQYGL 166
LSG K + GS + ++ ++ V IR GELL G+LDK +GS+ YGL
Sbjct: 712 LSG---KAKIGSKAWVKEKPRPIPDFDPDSMCESQVIIREGELLCGVLDKAHYGSSAYGL 768
Query: 167 VHAVWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARR 225
VH ++ +G E + +L+CLA+LFT YLQ GFTLGV DILV+ D R +II ++ +
Sbjct: 769 VHCCYEIYGGETSGRVLTCLARLFTAYLQLYRGFTLGVEDILVKPNADVVRQRIIEESTQ 828
Query: 226 LGTEAACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCL 284
G +A AL LP + I + Q+A+ S Q ID ++K ++ +N IN+ C+
Sbjct: 829 CGPQAVKAALSLPETASCDEIQGKWQDAHLSKDQRDFNMIDMKFKEEVNHYSNEINKACM 888
Query: 285 PEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPY 344
P GL FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PY
Sbjct: 889 PLGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPY 948
Query: 345 EVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTV 404
E +PRAGGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL +
Sbjct: 949 EFTPRAGGFVTGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVI 1008
Query: 405 HYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKK-- 462
YD+TVRDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I K + +L +
Sbjct: 1009 QYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLAGNYEVIMKSKHLHEVLSRAD 1068
Query: 463 ---------------HPLSLALLLLLTFKSSGKP--------NFIFSPH--RTKFTMDLL 497
H S ALL F S + N S R+ T +L
Sbjct: 1069 PQKVLGHIKAIKKWHHKHSGALLRKGAFLSFSQKIQAAVKALNLKGSIQNGRSPETQQML 1128
Query: 498 EQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK---GRTDAS 554
+ WY LD+++R KY+K+ CP P +S ++PD +F S+SE + +++ + + S
Sbjct: 1129 QMWYDLDEESRWKYQKRAAPCPDPSLSVWRPDIYFASVSETFEKKIDDFSQEWAAQAERS 1188
Query: 555 H------VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
+ +D+ ++ K SL +PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+ NV
Sbjct: 1189 YKKSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGETNV 1248
Query: 609 TLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIK 668
TLGIPRLREILM+A+ IKTP M +P D K KK L K +TR+ + +VL+KV I+
Sbjct: 1249 TLGIPRLREILMVASANIKTPMMSVPVF-DTKKALKKVKSLKKRLTRVCLGEVLQKVDIQ 1307
Query: 669 EWLEISPEPH--MNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKR--A 724
E + + + Y+++F F+P Y+ + ++P I+ E +F K L AI K+
Sbjct: 1308 ESFCMGEKRNKFQVYELRFQFLPHAYYQQEKCLRPEDILHFMETRFFKLLMEAIKKKKNK 1367
Query: 725 AQGLKNMNIEQSRDQMEDDVEDDEGEG-----AEGAGAALGRVDVSSDEERDEEDAVQSH 779
A +N+N SR + D+ D E G E G + V ++ E + DA +
Sbjct: 1368 ASAFRNVN---SRRATQKDLNDTEDSGRSQREEERDEEEEGNI-VDAEAEEGDADASDTK 1423
Query: 780 KKVNQEED----------------------------NDFEEPEDEERMSEREEDDNTSNI 811
+K QEE+ + EP++EE + EE+ +
Sbjct: 1424 RKEKQEEEVDYESEEEGEEEEEEEVQEEGNIKGDGVHQGHEPDEEEHLGLEEEESSQKPP 1483
Query: 812 GERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC---------KLLFLPSNLF-- 860
+ + ++ ++ V ++ + Y YD + +WC K+ F S+L
Sbjct: 1484 RRHSRPQGAEAIKRRIQAVRESYSFIEDYQYDTEESLWCQVTVKLPLMKINFDMSSLVVS 1543
Query: 861 -----------------------EEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIH 897
+ E + +L T+GIN+ + +Y +LDL +LY NDIH
Sbjct: 1544 LAHKAIVYTTKGITRCLLNETTNSKNEKELVLNTEGINLPELFKYSEILDLRRLYSNDIH 1603
Query: 898 YMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNP 957
MA+TYGIEAA RVI +E+K+VFAVYGI VDPRHLSLVADYM G Y +NR GI+ +
Sbjct: 1604 AMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIQSSS 1663
Query: 958 SFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLR 1007
S +Q+MTFE + ++QA+M G D L++PSA +++G+ + GTGLF+L+
Sbjct: 1664 SPLQQMTFETSFQFLKQATMMGSHDELKSPSACLVVGKVVKGGTGLFELK 1713
>gi|345782345|ref|XP_532976.3| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Canis lupus
familiaris]
Length = 1717
Score = 804 bits (2076), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/1135 (41%), Positives = 648/1135 (57%), Gaps = 138/1135 (12%)
Query: 1 MDGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA S +AEA L QYLVPKDG PL+GLIQDH++SGA +++R F
Sbjct: 589 FDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFF 648
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR-HGE 115
TR +YM L+Y+ L ++ PP I KP PLWTGKQV+ST++IN+ P+D + + G+
Sbjct: 649 TREQYMELLYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDHIPLSLSGK 708
Query: 116 L-LSGILDKKQFGSTQYGL-VHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDT 173
+SG ++ G ++ ++ V IR GELL G+LDK +GS+ YGLVH ++
Sbjct: 709 AKISGKAWVQESPRPVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEI 768
Query: 174 HGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGTEAAC 232
+G E + +L+CLA+LFT YLQ GFTLGV DILV+++ D KR +I ++ G A
Sbjct: 769 YGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKRKADMKRHLVIEESTHCGPRAVR 828
Query: 233 NALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCLPEGLIEP 291
AL LP + + + Q+A+ Q ID ++K ++ +N IN+ C+P GL
Sbjct: 829 AALNLPEAASCDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQ 888
Query: 292 FPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAG 351
FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PYE +PRAG
Sbjct: 889 FPDNNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAG 948
Query: 352 GFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVR 411
GFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V YD+TVR
Sbjct: 949 GFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVR 1008
Query: 412 DSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLL 471
DSD S++Q LYGEDGLD+ K Q+L KQF FL N K I K + +L + AL
Sbjct: 1009 DSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYKVIMKSKYLHEVLSRADPQKALRH 1068
Query: 472 LLTFKS---------SGKPNFIFSPH------------------RTKFTMDLLEQWYQLD 504
K K F+ R+ T +L+ W +LD
Sbjct: 1069 FRAIKKWQSKHSNALQRKGAFLNYSQKIQAAVKALNLEDGNQNGRSLGTHQILKMWGELD 1128
Query: 505 DKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYT---KGRTDASH------ 555
+++R+KY+KK CP P ++ ++PD +F S+SE V Y+ + + S+
Sbjct: 1129 EQSRRKYQKKAAPCPDPSLAVWRPDIYFASVSETFEKKVDDYSLEWAAQAEKSYKKSELS 1188
Query: 556 VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRL 615
+D+ ++ K SL +PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVTLGIPRL
Sbjct: 1189 LDRLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRL 1248
Query: 616 REILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISP 675
REILM+A+ IKTP M +P + K K+ L K +TR+ + +VLEK+ ++E I
Sbjct: 1249 REILMVASANIKTPMMSVPVF-NTKKALKRVKSLKKQLTRVCLGEVLEKIDVQESFCIGE 1307
Query: 676 --EPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKR--AAQGLKNM 731
+ YQ++F F+P Y+ + ++P I+ E +F K L ++ K+ A +++
Sbjct: 1308 KQDKFQVYQLRFQFLPHAYYQQEKCLRPEDILHFMETRFFKILMESLRKKNNKASAFRSV 1367
Query: 732 NIEQSRDQMEDDVEDDEGEGAEG----------------AGAALGRVDVSSDEERDEEDA 775
N +R + D+ D+ GE A A G D +SD +R E+
Sbjct: 1368 N---TRRATQRDL-DNSGESERNRGEQEGNEEEEGPIVDAEAEEGDAD-ASDAKRKEKQE 1422
Query: 776 V-----------------------------QSHKKVNQEEDNDFEEPEDEERMSEREEDD 806
+HK Q E+ PED + +
Sbjct: 1423 EEVDYESEEEEVEEENEDEDMQEEEHISGNSAHKAQEQNEEVG-SGPEDSPPATPLTQPR 1481
Query: 807 NTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKL-------------- 852
++ E E ++ V+ V H + Y YD + +WC++
Sbjct: 1482 KSTQNREPQGAEAKERR---VQAVRESHPFIEDYQYDTEESLWCQVTVKLPLMKINFDMT 1538
Query: 853 --------------------LFLPSNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLY 892
L ++ E + +L T+GIN+ + +Y +LDL++LY
Sbjct: 1539 SLVMSLAQSAVVYATKGITRCLLNETTNKKNEKELVLNTEGINLPELFKYAEVLDLSRLY 1598
Query: 893 VNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNG 952
NDIH MASTYGIEAA RVI +E+++VFAVYGI VDPRHLSLVADYM G Y +NR G
Sbjct: 1599 SNDIHAMASTYGIEAALRVIEKEIRDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFG 1658
Query: 953 IRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLR 1007
IR N S +Q+MTFE + ++QA+M G D LR+PSA +++G+ + GTGLF+L+
Sbjct: 1659 IRSNSSPLQQMTFETSFQFLKQATMMGSHDELRSPSACLVVGKVVKGGTGLFELK 1713
>gi|281339706|gb|EFB15290.1| hypothetical protein PANDA_018669 [Ailuropoda melanoleuca]
Length = 1692
Score = 804 bits (2076), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/1129 (41%), Positives = 649/1129 (57%), Gaps = 127/1129 (11%)
Query: 1 MDGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA S +AEA L QYLVPKDG PL+GLIQDH++SGA +++R F
Sbjct: 565 FDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFF 624
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL 116
TR +YM L+Y+ L ++ PP I KP PLWTGKQV+ST++IN+ P+D + +
Sbjct: 625 TREQYMELLYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDHIPLS---- 680
Query: 117 LSGI--LDKKQFGSTQYGLV-----HAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHA 169
LSG ++ K + V ++ ++ V IR GELL G+LDK +GS+ YGLVH
Sbjct: 681 LSGKAKINGKAWVQESPRPVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHC 740
Query: 170 VWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGT 228
++ +G E + +L+CLA+LFT YLQ GFTLGV DILV+ + D KR ++I ++ G
Sbjct: 741 CYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADVKRHRVIEESTHCGP 800
Query: 229 EAACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCLPEG 287
A AL LP + + + Q+A+ Q ID ++K ++ +N IN+ C+P G
Sbjct: 801 RAVRAALNLPEAASCDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFG 860
Query: 288 LIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVS 347
L FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PYE +
Sbjct: 861 LHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFT 920
Query: 348 PRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYD 407
PRAGGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V YD
Sbjct: 921 PRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYD 980
Query: 408 MTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSL 467
+TVRDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I K + +L +
Sbjct: 981 LTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSKHLHEVLSRADPQK 1040
Query: 468 ALLLLLTFK--SSGKPNFIF-------------------------SPHRTKFTMDLLEQW 500
AL K S N + RT T +L+ W
Sbjct: 1041 ALRHFRAIKKWQSKHSNALLRRGAFLNYSQKIQAAVKALNLEGGNQNGRTLGTHQILKLW 1100
Query: 501 YQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYT---KGRTDASH-- 555
+LD+++R+KY+KK CP P ++ ++PD +F S+SE + Y+ + + S+
Sbjct: 1101 GELDEQSRRKYQKKAAPCPDPSLAVWRPDIYFASVSETFERKMDDYSLEWASQAERSYEK 1160
Query: 556 ----VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLG 611
+D+ ++ K SL +PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVTLG
Sbjct: 1161 SELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLG 1220
Query: 612 IPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWL 671
IPRLREILM+A+ IKTP M +P + K K+ L K +TR+ + +VLEK+ ++E
Sbjct: 1221 IPRLREILMVASANIKTPMMSVPVF-NTKKALKRVKSLKKQLTRVCLGEVLEKIDVQESF 1279
Query: 672 EIS--PEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKR--AAQG 727
I + YQ++F F+P Y+ + ++P I+ E +F K L ++ K+ A
Sbjct: 1280 CIGDKQDKFQVYQLRFQFLPHAYYQQEKCLRPQDILHFVETRFFKILMESLKKKNSKASA 1339
Query: 728 LKNMNIEQSRDQ-MEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQ-- 784
+++N ++ + +++ E + G + V ++ E + DA + +K Q
Sbjct: 1340 FRSVNTRRATQRDLDNSGESERNRGEQEGDEEEEGPIVDAEAEEGDADASDAKRKEKQEE 1399
Query: 785 ------------------EEDNDFE-------EPEDEERMSEREEDDNTSNIGERFKIEF 819
+E+ + DEE S EED + +
Sbjct: 1400 EVDYESEEEEEENNDEDVQEEGHVSANGARKAQERDEEVGSGPEEDSPPAAPLTQPGKST 1459
Query: 820 R-------DSTNVFVKDVVNQHNIVHKYSYDKKNHMWC----KLLFLPSN---------- 858
R ++ V+ V H + Y YD + +WC KL + +N
Sbjct: 1460 RSREPQGAEAVERRVQAVRELHPFIEDYQYDSEESLWCQVTVKLPLMKTNFDMSSLVMSL 1519
Query: 859 ---------------LFEEKESKH-----LLKTDGINVNFISQYRHLLDLNKLYVNDIHY 898
L E +K +L T+GIN+ + +Y +LDL +LY NDIH
Sbjct: 1520 AQSAVVYATKGITRCLLNETTNKKNEKELVLNTEGINLPELFKYAEVLDLRRLYSNDIHA 1579
Query: 899 MASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPS 958
MASTYGIEAA RVI +E+++VFAVYGI VDPRHLSLVADYM G Y +NR GIR N S
Sbjct: 1580 MASTYGIEAALRVIEKEIRDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIRSNSS 1639
Query: 959 FIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLR 1007
+Q+MTFE + ++QA+M G D LR+PSA +++G+ R GTGLF+L+
Sbjct: 1640 PLQQMTFETSFQFLKQATMMGSHDELRSPSACLVVGKVVRGGTGLFELK 1688
>gi|300797776|ref|NP_001179805.1| DNA-directed RNA polymerase I subunit RPA1 [Bos taurus]
gi|296482516|tpg|DAA24631.1| TPA: DNA-directed RNA polymerase I subunit RPA1-like [Bos taurus]
Length = 1717
Score = 803 bits (2074), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/1144 (41%), Positives = 642/1144 (56%), Gaps = 156/1144 (13%)
Query: 1 MDGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA S +AEA L QYLVPKDG PL+GLIQDH++SGA +++R F
Sbjct: 589 FDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFF 648
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL 116
R +YM LV++ L ++ PP I KP PLWTGKQV+ST++IN+ P+D + +
Sbjct: 649 NREQYMELVFRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDHIPLN---- 704
Query: 117 LSGILDKKQFGSTQY-----GLV-----HAVWDTHVTIRHGELLSGILDKKQFGSTQYGL 166
LSG K + G + LV ++ ++ V IR GELL G+LDK +GS+ YGL
Sbjct: 705 LSG---KAKIGGKAWVKESPRLVPGFNPDSMCESQVIIRAGELLCGVLDKAHYGSSAYGL 761
Query: 167 VHAVWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARR 225
VH ++ +G E + +L+CLA+LFT YLQ GFTLGV DILV+ + D +R II +
Sbjct: 762 VHCCYEIYGGETSGRVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADVRRHGIIEDSTH 821
Query: 226 LGTEAACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCL 284
G A AL LP + + + Q+A+ S Q ID ++K ++ +N IN+ C+
Sbjct: 822 CGPRAVRAALNLPEAVSCDEVQGKWQDAHLSKDQRDFNMIDLKFKEEVNHYSNEINKACM 881
Query: 285 PEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPY 344
P GL FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PY
Sbjct: 882 PFGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPY 941
Query: 345 EVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTV 404
E +PRAGGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V
Sbjct: 942 EFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVV 1001
Query: 405 HYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHP 464
YD+TVRDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I K + +L +
Sbjct: 1002 QYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLTSNYEVIMKSKHLHEVLSRAD 1061
Query: 465 LSLALLLLLTFKS--SGKPNFIFSP-------------------------HRTKFTMDLL 497
AL K S N + R+ T +L
Sbjct: 1062 PQKALRHFRAIKKWHSKHSNTLLRKGAFLNYSQKIQAAVKALNLEGTNQNGRSPETYQML 1121
Query: 498 EQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYT---KGRTDAS 554
W +LD+++R+KY+KK CP P +S ++PD +F S+SE + Y+ + + S
Sbjct: 1122 RMWAELDEQSRRKYQKKAAPCPDPSLSVWRPDIYFASVSETFEKKMDDYSCEWAAQAERS 1181
Query: 555 H------VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
+ +D ++ K SL +PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNV
Sbjct: 1182 YEKSGLSLDSLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNV 1241
Query: 609 TLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIK 668
TLGIPRLREILM+A+ IKTP M +P + K KK L K +TR+ + +VLEK+ ++
Sbjct: 1242 TLGIPRLREILMVASSNIKTPMMSVPVF-NTKKALKKVKSLKKQLTRVCLGEVLEKIDVQ 1300
Query: 669 EWLEISPEPH--MNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKR--A 724
E I + + YQ++F F+P Y+ + +P I+ E +F K L AI K+
Sbjct: 1301 ESFRIGEKQNKFRVYQLRFQFLPHAYYQQEKCTRPEDILHFMETRFFKILMEAIRKKNSK 1360
Query: 725 AQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGR---VDVSSDE-ERDEEDAVQSHK 780
A +N+N ++ + D+ + E E G VD ++E + D DA + K
Sbjct: 1361 ASAFRNVNTRKATQRDLDNAGESERNRGEQEGDEEEEGHIVDAEAEEGDADASDAKRKEK 1420
Query: 781 K----------------------------------VNQEEDNDFEEPED---------EE 797
+ V QE++ PE+ +
Sbjct: 1421 QEEEVDYDSEEEEEKEEEEKEEEDIQEEGTGLKEGVQQEQEEGGWAPEESSLPGAPLTQP 1480
Query: 798 RMSEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKL----- 852
+ R + + ER R+ H + Y YD + +WC++
Sbjct: 1481 QKRARSREPQGAEAVERRAQAVREC-----------HPFIEDYQYDTQGSLWCQVTLKLP 1529
Query: 853 -----------------------------LFLPSNLFEEKESKHLLKTDGINVNFISQYR 883
L + + E + +L T+GIN+ + +Y
Sbjct: 1530 LMKVNFDMSSLVASLAQGAIIYATKGITRCLLNETINSKNEKELVLNTEGINLPELFKYA 1589
Query: 884 HLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSG 943
+LDL +LY NDIH MASTYGIEAA RVI +E+K+VFAVYGI VDPRHLSLVADYM G
Sbjct: 1590 EVLDLRRLYSNDIHAMASTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEG 1649
Query: 944 TYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGL 1003
Y +NR GIR N S +Q+MTFE + ++QA++ G D LR+PSA +++G+ + GTGL
Sbjct: 1650 VYKPLNRFGIRSNSSPLQQMTFETSFQFLKQATLMGSHDELRSPSACLVVGKVVKGGTGL 1709
Query: 1004 FQLR 1007
F+L+
Sbjct: 1710 FELK 1713
>gi|301786528|ref|XP_002928679.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like
[Ailuropoda melanoleuca]
Length = 1716
Score = 803 bits (2074), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/1129 (41%), Positives = 649/1129 (57%), Gaps = 127/1129 (11%)
Query: 1 MDGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA S +AEA L QYLVPKDG PL+GLIQDH++SGA +++R F
Sbjct: 589 FDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFF 648
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL 116
TR +YM L+Y+ L ++ PP I KP PLWTGKQV+ST++IN+ P+D + +
Sbjct: 649 TREQYMELLYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDHIPLS---- 704
Query: 117 LSGI--LDKKQFGSTQYGLV-----HAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHA 169
LSG ++ K + V ++ ++ V IR GELL G+LDK +GS+ YGLVH
Sbjct: 705 LSGKAKINGKAWVQESPRPVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHC 764
Query: 170 VWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGT 228
++ +G E + +L+CLA+LFT YLQ GFTLGV DILV+ + D KR ++I ++ G
Sbjct: 765 CYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADVKRHRVIEESTHCGP 824
Query: 229 EAACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCLPEG 287
A AL LP + + + Q+A+ Q ID ++K ++ +N IN+ C+P G
Sbjct: 825 RAVRAALNLPEAASCDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFG 884
Query: 288 LIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVS 347
L FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PYE +
Sbjct: 885 LHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFT 944
Query: 348 PRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYD 407
PRAGGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V YD
Sbjct: 945 PRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYD 1004
Query: 408 MTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSL 467
+TVRDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I K + +L +
Sbjct: 1005 LTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSKHLHEVLSRADPQK 1064
Query: 468 ALLLLLTFK--SSGKPNFIF-------------------------SPHRTKFTMDLLEQW 500
AL K S N + RT T +L+ W
Sbjct: 1065 ALRHFRAIKKWQSKHSNALLRRGAFLNYSQKIQAAVKALNLEGGNQNGRTLGTHQILKLW 1124
Query: 501 YQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYT---KGRTDASH-- 555
+LD+++R+KY+KK CP P ++ ++PD +F S+SE + Y+ + + S+
Sbjct: 1125 GELDEQSRRKYQKKAAPCPDPSLAVWRPDIYFASVSETFERKMDDYSLEWASQAERSYEK 1184
Query: 556 ----VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLG 611
+D+ ++ K SL +PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVTLG
Sbjct: 1185 SELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLG 1244
Query: 612 IPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWL 671
IPRLREILM+A+ IKTP M +P + K K+ L K +TR+ + +VLEK+ ++E
Sbjct: 1245 IPRLREILMVASANIKTPMMSVPVF-NTKKALKRVKSLKKQLTRVCLGEVLEKIDVQESF 1303
Query: 672 EIS--PEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKR--AAQG 727
I + YQ++F F+P Y+ + ++P I+ E +F K L ++ K+ A
Sbjct: 1304 CIGDKQDKFQVYQLRFQFLPHAYYQQEKCLRPQDILHFVETRFFKILMESLKKKNSKASA 1363
Query: 728 LKNMNIEQSRDQ-MEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQ-- 784
+++N ++ + +++ E + G + V ++ E + DA + +K Q
Sbjct: 1364 FRSVNTRRATQRDLDNSGESERNRGEQEGDEEEEGPIVDAEAEEGDADASDAKRKEKQEE 1423
Query: 785 ------------------EEDNDFE-------EPEDEERMSEREEDDNTSNIGERFKIEF 819
+E+ + DEE S EED + +
Sbjct: 1424 EVDYESEEEEEENNDEDVQEEGHVSANGARKAQERDEEVGSGPEEDSPPAAPLTQPGKST 1483
Query: 820 R-------DSTNVFVKDVVNQHNIVHKYSYDKKNHMWC----KLLFLPSN---------- 858
R ++ V+ V H + Y YD + +WC KL + +N
Sbjct: 1484 RSREPQGAEAVERRVQAVRELHPFIEDYQYDSEESLWCQVTVKLPLMKTNFDMSSLVMSL 1543
Query: 859 ---------------LFEEKESKH-----LLKTDGINVNFISQYRHLLDLNKLYVNDIHY 898
L E +K +L T+GIN+ + +Y +LDL +LY NDIH
Sbjct: 1544 AQSAVVYATKGITRCLLNETTNKKNEKELVLNTEGINLPELFKYAEVLDLRRLYSNDIHA 1603
Query: 899 MASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPS 958
MASTYGIEAA RVI +E+++VFAVYGI VDPRHLSLVADYM G Y +NR GIR N S
Sbjct: 1604 MASTYGIEAALRVIEKEIRDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIRSNSS 1663
Query: 959 FIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLR 1007
+Q+MTFE + ++QA+M G D LR+PSA +++G+ R GTGLF+L+
Sbjct: 1664 PLQQMTFETSFQFLKQATMMGSHDELRSPSACLVVGKVVRGGTGLFELK 1712
>gi|326919609|ref|XP_003206072.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Meleagris
gallopavo]
Length = 1646
Score = 801 bits (2068), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/1097 (43%), Positives = 640/1097 (58%), Gaps = 133/1097 (12%)
Query: 1 MDGWTQNASHFL-----KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTF 55
DG NA HF +AEA L QYLVPKDG PL GLIQDH+ISG ++ R F
Sbjct: 589 FDGDEMNA-HFPQNELGRAEAYTLAFTDEQYLVPKDGKPLPGLIQDHMISGVSMTTRGCF 647
Query: 56 LTRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGE 115
TR +YM LVY+ L I+T PP I KP LWTGKQV+ST++IN+ P+ V +
Sbjct: 648 FTREQYMELVYRGLTDKKGRIKTFPPAIMKPQRLWTGKQVVSTLLINIIPEKYVPLN--- 704
Query: 116 LLSGILDKKQFGSTQYGL--------VHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLV 167
L+G K + G + + ++ ++ V IR GELL G+LDK FGS+ YGLV
Sbjct: 705 -LTG---KAKIGGKAWMKGPANRCLNLDSMCESQVIIRGGELLCGVLDKAHFGSSAYGLV 760
Query: 168 HAVWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRL 226
H ++ +G E + +L+CL +LFT YLQ GFT+G+ DILV+ E DRKR KII K+ +
Sbjct: 761 HCCYEIYGGETSGKVLTCLGRLFTAYLQLYRGFTMGIEDILVKPEADRKRHKIIKKSNQC 820
Query: 227 GTEAACNALGLPLDTDPEIISSQLQEAYASIPQ--FRAQIDRQYKSLLDKVTNNINQVCL 284
G E AL LP E + + Q+A+ Q F +D ++K ++ N +N+VC+
Sbjct: 821 GIEVVRAALNLPETASCEDVQGKWQDAHLCKDQRDFNV-VDLKFKEEVNNYNNEVNKVCM 879
Query: 285 PEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPY 344
P GL FP NNLQ MV+SGAKGSTVNT+QISCLLGQIELEG+RP +M SG++LP F PY
Sbjct: 880 PFGLHRSFPENNLQLMVQSGAKGSTVNTVQISCLLGQIELEGRRPPLMASGKSLPCFQPY 939
Query: 345 EVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTV 404
+ SP +GGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V
Sbjct: 940 DFSPSSGGFVTGRFLTGIKPSEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVV 999
Query: 405 HYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWI-------------- 450
YD+TVRDSD S++Q LYGEDGLD+ K Q+L +QF F+ DN + I
Sbjct: 1000 QYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPEQFPFIADNYEVIQKTNHLNEALARME 1059
Query: 451 -----CSYKVILNLLKKHPLSL---ALLLLLTFKSSGKPNFIFSPHRTK-----FTMDLL 497
+K I +H S+ LL + K S +K T+ LL
Sbjct: 1060 SHQAKQQFKAIRKWWARHQNSVQREGGFLLFSQKKMASVKTQISGGESKNGRDPATLQLL 1119
Query: 498 EQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGR------- 550
+ WY+LD+K R+KY KK CP P ++ ++PD++F S+SE + V Y R
Sbjct: 1120 KMWYELDEKKRRKYLKKAHKCPDPSLAVWRPDSYFASVSETFENGVEDYINKRECKKGGG 1179
Query: 551 --TDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
A D+ D+++ K SL +PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNV
Sbjct: 1180 CVQSALSSDRLKDLLYLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNV 1239
Query: 609 TLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIK 668
TLGIPRLREILM+A+ IKTP M +P L + K KK +L K +TR+ +A+VL+KV+++
Sbjct: 1240 TLGIPRLREILMVASANIKTPMMSVPVL-NTKKAHKKVKQLKKQLTRVCLAEVLQKVELE 1298
Query: 669 EWLEISPE--PHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQ 726
E L + + H Y++KFCF+P Y ++ VKP I+ E +F K AI KR
Sbjct: 1299 ESLHLKNKENSHRLYKIKFCFLPHEYYGEEKCVKPRDILHFMETRFFKIFLEAI-KRKHT 1357
Query: 727 GLKNMNIEQSRDQMEDDVED--DEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQ 784
+ + +R DVED D+ + + A + D E DE D + K+ +
Sbjct: 1358 KMSSFTEVSTRKVTRRDVEDVGDKAQNNQEAPEGEEEEKI-VDAEPDEGDGDATEAKMRR 1416
Query: 785 EEDNDFE-----------------------------EPEDEERMSEREEDDNTSNIG--- 812
++ + + + DEE + + DN+ ++
Sbjct: 1417 NQEEEVDYESEEENGEENTAENPEDEEGESEKEERTQDADEEEQNG-ADGDNSQHLSFMA 1475
Query: 813 --ERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNLFEEKESKHLLK 870
++ + + S V V V+N H + Y++D +N +WC+
Sbjct: 1476 QTKKERAQLLKSAEVRVNAVLNSHPSIQDYTFDTENELWCECF----------------- 1518
Query: 871 TDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 930
+LDLN+LY NDIH MA YGIE+A RV+I+E+K+VFAVYGI VDPR
Sbjct: 1519 -------------QILDLNRLYSNDIHAMARNYGIESALRVLIKEIKDVFAVYGIVVDPR 1565
Query: 931 HLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSAR 990
HLSLVADYM G Y MNR GI+ + S +Q+MTFE + +++A+M G D LR+PSA
Sbjct: 1566 HLSLVADYMCFEGVYKPMNRFGIQSSSSPLQQMTFETSYKFLKEATMMGAYDELRSPSAC 1625
Query: 991 VMLGQECRQGTGLFQLR 1007
++LG+ + GTGLF L+
Sbjct: 1626 LVLGKVVKGGTGLFDLK 1642
>gi|351705321|gb|EHB08240.1| DNA-directed RNA polymerase I subunit RPA1 [Heterocephalus glaber]
Length = 1715
Score = 801 bits (2068), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/1128 (41%), Positives = 648/1128 (57%), Gaps = 131/1128 (11%)
Query: 1 MDGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA S +AEA L QYLVPKDG PL+GLIQDH++SGA +++R F
Sbjct: 594 FDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFF 653
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL 116
TR +YM LVY+ L ++ PP I KP PLWTGKQV+ST++IN+ P++ V +
Sbjct: 654 TREQYMELVYRGLTDKVGHVKLFPPAILKPFPLWTGKQVVSTLLINIIPENYVPLN---- 709
Query: 117 LSG---ILDKKQFGSTQYGLVH----AVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHA 169
LSG I K T + + ++ V IR GELL G+LDK +GS+ YGLVH
Sbjct: 710 LSGKAKIPGKAWIQGTPRPAPNFNPDLMCESQVIIREGELLCGVLDKAHYGSSAYGLVHC 769
Query: 170 VWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGT 228
++ +G E + +L+CLA+LFT YLQ GFTLGV DILV+ + D+ R +II ++ + G
Sbjct: 770 CYEIYGGETSGRVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADKTRHQIIEESTQCGP 829
Query: 229 EAACNALGLPLDTDPEIISSQLQEAYASIPQ--FRAQIDRQYKSLLDKVTNNINQVCLPE 286
A AL LP + + + Q+A+ Q F ID ++K ++ +N IN+ C+P
Sbjct: 830 RAVRAALNLPETASCDEVRGKWQDAHLGKDQRDFNV-IDLKFKEEVNHYSNEINKACMPL 888
Query: 287 GLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEV 346
GL FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F YE
Sbjct: 889 GLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEAYEF 948
Query: 347 SPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHY 406
+PRAGGF+ GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V Y
Sbjct: 949 TPRAGGFITGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQY 1008
Query: 407 DMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLS 466
D+TVRDSD S+IQ LYGEDGLD+ K +L KQF FL N + I K + +L +
Sbjct: 1009 DLTVRDSDGSVIQFLYGEDGLDIPKTPFLQPKQFPFLASNYEVIVKSKHLHEVLSRGDSQ 1068
Query: 467 LALLLLLTFKS--SGKPNFIF-------------------------SPHRTKFTMDLLEQ 499
AL K S N + R+ +L+
Sbjct: 1069 KALRHFRAIKKWHSKHSNALLRRGAFLSYSQKIQAAVRALNLEGKNQNGRSPEAQQMLQM 1128
Query: 500 WYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK---GRTDASH- 555
WY+LD++ R+KY+KK CP P +S ++PD + S+SE V Y++ + + S+
Sbjct: 1129 WYELDEQRRRKYQKKAAPCPDPSLSVWRPDIYLASVSETFEKKVDDYSQEWAAQAEKSYE 1188
Query: 556 -----VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTL 610
+D+ ++ K SL +PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVTL
Sbjct: 1189 KSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTL 1248
Query: 611 GIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEW 670
GIPRLREILM+A+ IKTP M +P + K K+ L K +TR+ + +VL+KV ++E
Sbjct: 1249 GIPRLREILMVASANIKTPMMSVPVF-NTKKALKRVKSLKKQLTRVCLGEVLQKVDVEES 1307
Query: 671 LEISPEPH--MNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGL 728
+ + + YQ++F F+P Y+ + ++P I+ E +F K L +I KR ++
Sbjct: 1308 FCMGEKQNKFRVYQLQFHFLPHVYYQQEKCLRPEDILRFMETRFFKLLMESIRKRHSKAS 1367
Query: 729 KNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRVD-----VSSDEERDEEDAVQSHKKVN 783
++ R D DD GE G G + V ++ E + DA + K
Sbjct: 1368 AFRSVNTRRATQRD--LDDAGESGRSRGEQEGDEEDEGNIVDAEAEEGDADASDTKSKEK 1425
Query: 784 Q------------------------------EEDNDFEEPEDEERMSEREEDDNTSNIGE 813
Q E+ N EP +E S EED + +
Sbjct: 1426 QEEEVDYESEEEEEKEEEEDDDTQEDGNICGEDANWAHEP--DEVGSVLEEDLSQKPLCL 1483
Query: 814 RFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKL-LFLP--------SNLFE--- 861
+ + ++ V+ V H+ + Y YD + +WC++ L LP S+L
Sbjct: 1484 HREPQGAEAVECRVQAVREAHSFIEDYQYDTEEGLWCQVTLKLPLMKINFDMSSLIMSLA 1543
Query: 862 ----------------------EKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYM 899
+ E + +L T+GIN+ + +Y +LDL +LY NDIH M
Sbjct: 1544 HSAVVYTTKGITRCLLNETTSCKNEKELVLNTEGINLPELFKYSEVLDLRRLYSNDIHAM 1603
Query: 900 ASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSF 959
A+TYGIEAA RVI +E+K+VFAVYGI VDPRHLSLVADYM G Y +NR GIR + S
Sbjct: 1604 ANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIRSSSSP 1663
Query: 960 IQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLR 1007
+Q+MTFE + ++QA+M G D L++PSA +++G+ + GTGLF+L+
Sbjct: 1664 LQQMTFETSFQFLKQATMMGSHDELKSPSACLVVGKVVKGGTGLFELK 1711
>gi|47214109|emb|CAG00674.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1949
Score = 800 bits (2065), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/1118 (41%), Positives = 648/1118 (57%), Gaps = 151/1118 (13%)
Query: 1 MDGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA S +AEA L++ QYLVPKDG PL+GLIQDH++SG +++LR F
Sbjct: 571 FDGDEMNAHFPQSELARAEAYTLVSTDHQYLVPKDGKPLAGLIQDHMVSGTRMTLRGCFF 630
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL 116
+RA+Y LVY+ L I+ LPP I+KP LWTGKQ++ST+++N+ P+D + +
Sbjct: 631 SRAQYTELVYRGLTDKQGRIKLLPPAIFKPQQLWTGKQLVSTLLLNVIPRDAIPL----- 685
Query: 117 LSGILDKKQFGSTQYGLVHA----------VWDTHVTIRHGELLSGILDKKQFGSTQYGL 166
++ K + S + V + D+ V I GELL G+LDK +GS+ YGL
Sbjct: 686 --NLVGKSKIPSKAWIQVPPRSAPGYKPDDMCDSQVVICQGELLVGVLDKAHYGSSAYGL 743
Query: 167 VHAVWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARR 225
VH ++ +G E + +LLSCLA+LFT YLQ GFTLGV DILV+ +R+R KII + +
Sbjct: 744 VHCCYELYGGETSGNLLSCLARLFTAYLQLFRGFTLGVEDILVKPYANRQRKKIIEDSLK 803
Query: 226 LGTEAACNALGLPLDTDPEIISSQLQEAYASIPQFR--AQIDRQYKSLLDKVTNNINQVC 283
+GT+A LP D + + Q+A+ + P R +D ++K + ++V N+IN+VC
Sbjct: 804 IGTKALQATFNLPSTMDRAEVQGRWQDAHLN-PDQRDFIMVDHKFKEVANQVNNDINKVC 862
Query: 284 LPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLP 343
+P GL FP NNLQ MV+SGAKGS+VNTMQISCLLGQIELEG+RP +M SG++LP F P
Sbjct: 863 MPVGLHTSFPDNNLQLMVQSGAKGSSVNTMQISCLLGQIELEGRRPPLMPSGKSLPCFQP 922
Query: 344 YEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLT 403
Y+ +P AGGFV GRF+TGI+PQEFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL
Sbjct: 923 YDPAPGAGGFVSGRFLTGIKPQEFFFHCMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLV 982
Query: 404 VHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKH 463
V YD+TVRDSD S+IQ LYGEDGLDV K Q+L KQF F+E+N + + L+
Sbjct: 983 VQYDLTVRDSDGSVIQFLYGEDGLDVPKTQFLQPKQFPFIEENYE-------VTPLMSLG 1035
Query: 464 PLSLALLLLLTFKSSG----------------------------------KPNFIFS--- 486
PL L++ KS G P +FS
Sbjct: 1036 PLGATCGLVIN-KSQGLDEVLRHLDSQSAQKHFATIQRWREKRQAVTPRTGPFLLFSKKM 1094
Query: 487 ---------------PHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAH 531
P RT LL++W L+D +RKKY +K CP+P +S F+PD
Sbjct: 1095 LPKLKPENQISEPGTPGRTDIAQQLLQRWNSLEDSSRKKYSRKTSPCPEPTLSLFRPDVC 1154
Query: 532 FGSISENLADSVVKY--TKGRTDASHVDK-------------FYDMIFYKNLLSLANPGE 576
FGS+SE KY ++G+ +D + ++ +K +L PG+
Sbjct: 1155 FGSVSETFHRIADKYLQSRGQQREDRLDAHRSSLILAFTAPGLHQLLNFKWQRALCEPGD 1214
Query: 577 NVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFL 636
VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVTLGIPRL+EILM+A+ +IKTP M IP L
Sbjct: 1215 AVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLKEILMVASSSIKTPMMSIPVL 1274
Query: 637 PDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCFIPAHMYRDK 696
+ L KKA L K +R+ +++VL K+ + E L+I E +++ F F+P Y +
Sbjct: 1275 NNKKAL-KKARTLQKKFSRVCLSEVLHKIDVVETLQIGNERQRTFRITFHFLPPEHYCED 1333
Query: 697 TSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAG 756
+ P +I+++ E +F L A+ KR A+ L ++ +E + D +D +G+ ++
Sbjct: 1334 KLLSPQQILNYMETRFFYLLLDAVKKRNAK-LSSIAVETRKASTSD--KDHDGDASQATA 1390
Query: 757 AALGRV--------DVSSDEERDEEDAVQSHKK---------------------VNQEED 787
A G D++++ + D D Q K+ E+
Sbjct: 1391 ADNGDNEEEQEIVDDLANEGDADASDMKQKEKQEEEVDYESEEEENKEDEGEPEEENAEE 1450
Query: 788 NDFEEPEDEERMS-----EREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSY 842
++P+ E+ + RE+ + G D T + V V+ + + +Y +
Sbjct: 1451 ESLQQPQAEKTRAPSLRRAREQSEGGKPEG--------DPTQMRVNAVLQSNPAIQRYCF 1502
Query: 843 DKKNHMWCKLLFLPSNLFEE---KESKHLLKTD--GINVNFISQYRHLLDLNKLYVNDIH 897
D++ +W ++ F E K SKH T + V+ +LD+N+LY N++H
Sbjct: 1503 DQEQELWREVGIATKLSFPEHVLKMSKHFSATSLADVCVHVCVVSAQVLDVNRLYSNEVH 1562
Query: 898 YMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNP 957
MA+ YGIE A +VI +E+K+VFAVYGIEVDPRHLSLVADYM G Y +NR+ IR N
Sbjct: 1563 AMANKYGIEVALKVIEKEIKDVFAVYGIEVDPRHLSLVADYMCFEGVYKPLNRHAIRSNS 1622
Query: 958 SFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQ 995
S +Q+MTFE + I+QA+M G D L +PSA +++G+
Sbjct: 1623 SPLQQMTFETSYKFIKQATMLGSHDRLASPSASLVVGK 1660
>gi|4096591|gb|AAC99959.1| DNA-directed RNA polymerase I, largest subunit [Homo sapiens]
Length = 1717
Score = 800 bits (2065), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/1145 (41%), Positives = 651/1145 (56%), Gaps = 158/1145 (13%)
Query: 1 MDGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA S +AEA L QYLVPKDG PL+GLIQDH++SGA ++ R F
Sbjct: 589 FDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFF 648
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL 116
TR YM LVY+ L ++ L P+I KP PLWTGKQV+ST++IN+ P+D + +
Sbjct: 649 TREHYMELVYRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLN---- 704
Query: 117 LSG---ILDKKQFGSTQYGLV----HAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHA 169
LSG I K T + ++ ++ V IR GELL G+LDK +GS+ YGLVH
Sbjct: 705 LSGKAKITGKAWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHC 764
Query: 170 VWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGT 228
++ +G E + +L+CLA+LFT YLQ GFTLGV DILV+ +RD KR +II ++ G
Sbjct: 765 CYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPKRDVKRQRIIEESTHCGP 824
Query: 229 EAACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCLPEG 287
+A AL LP + + + Q+A+ Q ID ++K ++ +N IN+ C+P G
Sbjct: 825 QAVRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFG 884
Query: 288 LIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVS 347
L FP N LQ MV+SGAKGSTVNTMQISCLLGQIELEG+ +M SG++LP F PYE +
Sbjct: 885 LHRQFPENTLQLMVQSGAKGSTVNTMQISCLLGQIELEGRSTPLMASGKSLPCFEPYEFT 944
Query: 348 PRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYD 407
PRAGGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V YD
Sbjct: 945 PRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYD 1004
Query: 408 MTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSL 467
+TVRDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I + + +L +
Sbjct: 1005 LTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHLHEVLSRADPKK 1064
Query: 468 ALLLLLTFK--SSGKPNFIF--------------------------SPHRTKFTMDLLEQ 499
AL K S PN + + R + +L
Sbjct: 1065 ALHHFRAIKKWQSKHPNTLLRRGAFLSYSQKIQEAVKALKLESENRNGRRPWDSGRMLRM 1124
Query: 500 WYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK---GRTDASH- 555
WY+LD+++R+KY+KK ACP P +S ++PD +F S+SE V Y++ +T+ S+
Sbjct: 1125 WYELDEESRRKYQKKAAACPDPSLSVWRPDIYFASVSETFETKVDDYSQEWAAQTEKSYE 1184
Query: 556 -----VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTL 610
+D+ ++ K SL PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVTL
Sbjct: 1185 KSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTL 1244
Query: 611 GIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKE- 669
GIPRLREILM+A+ IKTP M +P L + K K+ L K +TR+ + +VL+K+ ++E
Sbjct: 1245 GIPRLREILMVASANIKTPMMSVPVL-NTKKALKRVKSLKKQLTRVCLGEVLQKIDVQES 1303
Query: 670 -WLEISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKR--AAQ 726
+E YQ++F F+P Y+ + ++P I+ E +F K L +I K+ A
Sbjct: 1304 FCMEEKQNKFQVYQLRFQFLPHAYYQQEKCLRPEDILRFMETRFFKLLMESIKKKNNKAS 1363
Query: 727 GLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGR---------------VDVSSDE-ER 770
+N+N +R + D+ D+ GE LGR VD ++E +
Sbjct: 1364 AFRNVN---TRRATQRDL-DNAGE--------LGRSRGEQEGDEEEEGHIVDAEAEEGDA 1411
Query: 771 DEEDAVQSHKKVN----------------------QEEDNDFEEPEDEERMSEREED--- 805
D DA + K+ QEE N E + E++E+
Sbjct: 1412 DASDAKRKEKQEEEVDYESEEEEEREGEENDDEDMQEERNPHR--EGARKTQEQDEEVGL 1469
Query: 806 ---------DNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC------ 850
D + ++ V+ V H + Y YD + +WC
Sbjct: 1470 GGPVPSHPPDAAPETHPQPGAPGAEAMERRVQAVREIHPFIDDYQYDTEESLWCQVTVKL 1529
Query: 851 ---KLLFLPSNLF-------------------------EEKESKHLLKTDGINVNFISQY 882
K+ F S+L + E + +L T+GIN+ + +Y
Sbjct: 1530 PLMKINFDMSSLVVSLAHGAVIYATKGITRCLLNETTNNKNEKELVLNTEGINLPELFKY 1589
Query: 883 RHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHS 942
+LDL +LY NDIH +A+TYGIEA RVI +E+K+VFAVYGI VDPRHLSLVADYM
Sbjct: 1590 AEVLDLRRLYSNDIHAIANTYGIEAL-RVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFE 1648
Query: 943 GTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTG 1002
G Y +NR GIR N S +Q+MTFE + ++QA+M G D LR+PSA +++G+ R GTG
Sbjct: 1649 GVYKPLNRFGIRSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVRGGTG 1708
Query: 1003 LFQLR 1007
LF+L+
Sbjct: 1709 LFELK 1713
>gi|307179175|gb|EFN67613.1| DNA-directed RNA polymerase I subunit RPA1 [Camponotus floridanus]
Length = 1686
Score = 795 bits (2054), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/1109 (40%), Positives = 660/1109 (59%), Gaps = 113/1109 (10%)
Query: 1 MDGWTQNASHF-----LKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTF 55
DG NA HF ++E + NV +QYLVPKDG+PLSGLIQD++I+G +L+ R F
Sbjct: 582 FDGDEMNA-HFPQNELARSEGYNIANVCNQYLVPKDGTPLSGLIQDYIIAGVQLTTRGQF 640
Query: 56 LTRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGE 115
++ Y LVY AL ++ ++ LPPTI KP PLW+GKQVLSTVIIN+ P DK R
Sbjct: 641 FSQTHYTQLVYTALSMVQGDVILLPPTIIKPKPLWSGKQVLSTVIINIIPSDKT--RINL 698
Query: 116 LLSGILDKKQF---------GSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGL 166
+ + ++ K++ ++ + + V IRHGELL G+LDK +G+T YGL
Sbjct: 699 ISNAKINVKEWQVETPRRWKCGVEFKNPIIMSEAEVVIRHGELLCGVLDKMHYGATSYGL 758
Query: 167 VHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRL 226
+H +++ +G +A +LS AKLF +L+ GFTLGV DIL+ + D+KR ++I R++
Sbjct: 759 IHCIYELYGEMYASKILSAFAKLFQTFLRYNGFTLGVEDILITHKIDKKRKELILDCRKI 818
Query: 227 GTEAACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPE 286
G + + + + + + +++E Y +FRAQ+D +YKS+LD TN+IN+ CL
Sbjct: 819 GEDVQKSIIKVSNEVSMDEFKDKVEEFYWHNSKFRAQVDHKYKSVLDVYTNDINRTCLQL 878
Query: 287 GLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEV 346
GL + FP NNLQ MV+SGAKGS VNTMQISCLLGQ ELEGKRP +M+SG++L SF Y+
Sbjct: 879 GLFKKFPKNNLQLMVQSGAKGSMVNTMQISCLLGQSELEGKRPPLMISGKSLSSFSAYDP 938
Query: 347 SPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHY 406
+PRAGGF+D RFMTGI+ QE FFHCMAGREGL+DTAVKTSRSGYLQRCLVKHLEGL + Y
Sbjct: 939 TPRAGGFIDSRFMTGIKSQECFFHCMAGREGLVDTAVKTSRSGYLQRCLVKHLEGLVIGY 998
Query: 407 DMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNL------- 459
D TVRD D SLIQ YGEDGLD+ ++L +Q +FL DN I K++ L
Sbjct: 999 DATVRDYDGSLIQFYYGEDGLDIPGSRFLRKEQMAFLADNKDAIIDTKLLEYLKTDNKKI 1058
Query: 460 -----------------LKKHPLSLALLLLLTFKSS--GKPNFIFSPHRTKFTMDLLEQW 500
LKK +S + +++ K + S R+K + L+ +W
Sbjct: 1059 RKMIKKIKKWEDKNGSSLKKKRISEFTRFSIENQNNLKEKRSIDKSNGRSKAALSLMRKW 1118
Query: 501 YQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDK-- 558
+ ++ ++ +R + CP P+ S ++ D FG + E + + +Y + + K
Sbjct: 1119 IRTKEEVKETFRAQCAKCPDPVTSKYRQDIEFGVLPERIEGLIDEYV---FHSPKIKKSI 1175
Query: 559 FYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREI 618
D++ K + S+ PGE VG+LAAQSIGEPSTQMTLNTFHF+GRGDMNVTLGIPRLREI
Sbjct: 1176 LRDLLSIKIMKSICPPGEPVGLLAAQSIGEPSTQMTLNTFHFSGRGDMNVTLGIPRLREI 1235
Query: 619 LMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPH 678
LM+A+K IKTPSMEIPF ++ LEK+A +L +T+ + DVL+ + + +E SP
Sbjct: 1236 LMIASKNIKTPSMEIPFQNNLQNLEKQAKKLRLKLTKCVLRDVLKDITVSRTIEKSPYRK 1295
Query: 679 MNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKEL--EVAIAKRAAQGLKNMNIEQS 736
+ Y + ++P Y+++ S+ +I E+ F K + E+ +A++ L + E+
Sbjct: 1296 LVYTIMIEYLPYKSYKNEFSIHRQDVIKRTEKFFFKNIFKEIEKLTKASKVLLHYEGEKR 1355
Query: 737 RDQMEDDVE--DDEGEGAEGAG----AALGRVDVSSDEERDEEDA-VQSHKKVNQEEDN- 788
+ +D ++ D + +E G LG + SSDEE EDA + +++ ++N
Sbjct: 1356 QASNDDALDQFDPDDIMSENTGRRMQMDLGEMHESSDEEEIAEDADATMSRSLSRHQENQ 1415
Query: 789 ----------DFEEPEDEE-----------RMSEREEDDNTSNIGERFKIEFRDSTNVFV 827
D ++EE + EEDD T E+ D N
Sbjct: 1416 EYEDSEEEVEDITNYKEEEADNNNINKNLENTEDNEEDDYTK---EKLDNRKNDKYNR-K 1471
Query: 828 KDVVNQHNIVHKYSYDKKNHMWCKLLF----------LPSNL------------------ 859
K V++ + Y YD+ WCK F LP+ +
Sbjct: 1472 KCVLDSYLYATDYDYDESKLSWCKFTFWLPLKMIKLDLPTIIKNAADKTVLCEIPHIKKA 1531
Query: 860 --FEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVK 917
F+ E++ +LKTDG+N+ + +Y +L+LN+LY NDI+ ++ TYGIEAAN+VI+REV+
Sbjct: 1532 FTFQNSENETILKTDGLNIVEMFKYDKILNLNRLYSNDIYNISLTYGIEAANKVIVREVR 1591
Query: 918 NVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASM 977
++F +YGI VD RHLSL+ADYMT GT+ ++R G+ + S +Q+++FE L ++ A++
Sbjct: 1592 DIFKMYGITVDCRHLSLIADYMTFDGTFQPLSRKGMENSASPLQQISFESSLAFLKSATL 1651
Query: 978 QGREDSLRAPSARVMLGQECRQGTGLFQL 1006
QG++D + +PS+R+MLGQ C+ GTG F +
Sbjct: 1652 QGKKDDILSPSSRLMLGQPCKSGTGAFSV 1680
>gi|426223541|ref|XP_004005933.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
RPA1 [Ovis aries]
Length = 1720
Score = 795 bits (2052), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/1146 (41%), Positives = 647/1146 (56%), Gaps = 159/1146 (13%)
Query: 2 DGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLT 57
DG NA S +AEA L QYLVPKDG PL+GLIQDH++SGA +++R F +
Sbjct: 590 DGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFS 649
Query: 58 RAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELL 117
R +YM LVY+ L ++ LPP I KP PLWTGKQV+ST++IN+ P+D + + L
Sbjct: 650 REQYMELVYRGLTDKVGRVKLLPPAILKPFPLWTGKQVVSTLLINIIPEDHIPLN----L 705
Query: 118 SGILDKKQFGSTQY-----GLV-----HAVWDTHVTIRHGELLSGILDKKQFGSTQYGLV 167
SG K + G + LV ++ ++ V IR GELL G+LDK +GS+ YGLV
Sbjct: 706 SG---KAKIGGKAWVKESPRLVPGFNPDSMCESQVIIRAGELLCGVLDKAHYGSSAYGLV 762
Query: 168 HAVWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRL 226
H ++ +G E + CLA+LFT YLQ GFTLGV DILV+ + D +R I+ ++
Sbjct: 763 HCCYEIYGGETSGRGAPCLARLFTAYLQLYRGFTLGVEDILVKPKADVRRHGIVKESTHC 822
Query: 227 GTEAACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCLP 285
G A AL LP + + + Q+A+ + Q ID ++K ++ +N IN+ C+P
Sbjct: 823 GPRAVRAALNLPEAASCDEVQGKWQDAHLNKDQRDFNMIDLKFKEEVNHYSNEINKACMP 882
Query: 286 EGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYE 345
GL FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PYE
Sbjct: 883 FGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYE 942
Query: 346 VSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVH 405
+PRAGGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V
Sbjct: 943 FTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQ 1002
Query: 406 YDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPL 465
YD+TVRDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I K + +L +
Sbjct: 1003 YDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSKHLHEVLSRADP 1062
Query: 466 SLALLLLLTFKS--SGKPNFIFSP-------------------------HRTKFTMDLLE 498
AL K S N + RT T +L
Sbjct: 1063 QKALRHFRAVKKWHSKHSNALLRKGAFLNYSQKIQAAVKALNLEGTNQNGRTPETYQMLR 1122
Query: 499 QWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYT---KGRTDASH 555
W +LD+++R+KY+KK CP P +S ++PD +F S+SE + Y+ + + S+
Sbjct: 1123 MWAELDEQSRRKYQKKAAPCPDPSLSVWRPDIYFASVSETFEKKMDDYSCEWAAQAERSY 1182
Query: 556 ------VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVT 609
+D ++ K SL +PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVT
Sbjct: 1183 EKSGLSLDSLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVT 1242
Query: 610 LGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKE 669
LGIPRLREILM+A+ IKTP M +P + K KK L K +TR+ + +VLEK+ ++E
Sbjct: 1243 LGIPRLREILMVASANIKTPMMSVPVF-NTKKALKKVKSLKKQLTRVCLGEVLEKIDVQE 1301
Query: 670 WLEISPEPH--MNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKR--AA 725
+ + + Y+++F F+P Y+ + ++P I+ E +F K L AI K+ A
Sbjct: 1302 SFYMGEKQNKFRVYKLRFQFLPHAYYQQEKCMRPEDILHFMETRFFKILMEAIRKKNSKA 1361
Query: 726 QGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGR---VDVSSDE-ERDEEDAVQSHKK 781
+++N ++ + D+ + E E G VD ++E + D DA + K+
Sbjct: 1362 SAFRSVNTRRATQRDLDNAGESERSRGEQEGDEEEEGHIVDAEAEEGDADASDAKRKEKQ 1421
Query: 782 -------------------------------------VNQEEDNDFEEPED--------- 795
V QE++ PE+
Sbjct: 1422 EEEVDYDSEEEEEEEEKEDEEKEDEDVQEERAGLKEDVQQEQEEGGWAPEESSLPGAPLM 1481
Query: 796 EERMSEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKL-LF 854
+ + R + + ER R+ H + Y YD + +WC++ L
Sbjct: 1482 QPQKRARSREPQGAEAVERRAQAVREC-----------HPFIEDYQYDTQGSLWCQVTLK 1530
Query: 855 LP--------SNLF-------------------------EEKESKHLLKTDGINVNFISQ 881
LP S+L + E + +L T+GIN+ + +
Sbjct: 1531 LPLMKVNFDMSSLVASLAQGAVIYATKGITRCLLNETTNSKNEKELVLNTEGINLPELFK 1590
Query: 882 YRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 941
Y +LDL +LY NDIH MASTYGIEAA RVI +E+K+VFAVYGI VDPRHLSLVADYM
Sbjct: 1591 YAEVLDLRRLYSNDIHAMASTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCF 1650
Query: 942 SGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGT 1001
G Y +NR GIR N S +Q+MTFE + ++QA++ G D LR+PSA +++G+ + GT
Sbjct: 1651 EGVYKPLNRFGIRSNSSPLQQMTFETSFQFLKQATLLGSHDELRSPSACLVVGKVVKGGT 1710
Query: 1002 GLFQLR 1007
GLF+L+
Sbjct: 1711 GLFELK 1716
>gi|221040014|dbj|BAH11770.1| unnamed protein product [Homo sapiens]
Length = 1207
Score = 790 bits (2040), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/1117 (42%), Positives = 638/1117 (57%), Gaps = 155/1117 (13%)
Query: 1 MDGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA S +AEA L QYLVPKDG PL+GLIQDH++SGA ++ R F
Sbjct: 94 FDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFF 153
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL 116
TR YM LVY+ L ++ L P+I KP PLWTGKQV+ST++IN+ P+D + +
Sbjct: 154 TREHYMELVYRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLN---- 209
Query: 117 LSG---ILDKKQFGSTQYGLV----HAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHA 169
LSG I K T + ++ ++ V IR GELL G+LDK +GS+ YGLVH
Sbjct: 210 LSGKAKITGKAWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHC 269
Query: 170 VWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGT 228
++ +G E + +L+CLA+LFT YLQ GFTLGV DILV+ + D KR +II ++ G
Sbjct: 270 CYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGP 329
Query: 229 EAACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCLPEG 287
+A AL LP + + + Q+A+ Q ID ++K ++ +N IN+ C+P G
Sbjct: 330 QAVRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFG 389
Query: 288 LIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVS 347
L FP N+LQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PYE +
Sbjct: 390 LHRQFPENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFT 449
Query: 348 PRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYD 407
PRAGGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V YD
Sbjct: 450 PRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYD 509
Query: 408 MTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSL 467
+TVRDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I + + +L +
Sbjct: 510 LTVRDSDGSVVQFLYGEDGLDIPKTQFLQAKQFPFLASNYEVIMKSQHLHEVLSRADPKK 569
Query: 468 ALLLLLTFK--SSGKPNFIF-------------------------SPHRTKFTMDLLEQW 500
AL K S PN + R+ T ++L W
Sbjct: 570 ALHHFRAIKKWQSKHPNTLLRRGAFLSYSQKIQEAVKALKLESENRNGRSPGTQEMLRMW 629
Query: 501 YQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK---GRTDASH-- 555
Y+LD+++R+KYRKK ACP P +S ++PD +F S+SE V Y++ +T+ S+
Sbjct: 630 YELDEESRRKYRKKAAACPDPSLSVWRPDIYFASVSETFETKVDDYSQEWAAQTEKSYEK 689
Query: 556 ----VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLG 611
+D+ ++ K SL PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVTLG
Sbjct: 690 SELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLG 749
Query: 612 IPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKE-- 669
IPRLREILM+A+ IKTP M +P L + K K+ L K +TR+ + +VL+K+ ++E
Sbjct: 750 IPRLREILMVASANIKTPMMSVPVL-NTKKALKRVKSLKKQLTRVCLGEVLQKIDVQESF 808
Query: 670 WLEISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKR--AAQG 727
+E YQ++F F+P Y+ + ++P I+ E +F K L +I K+ A
Sbjct: 809 CMEEKQNKFQVYQLRFQFLPHAYYQQEKCLRPEDILRFMETRFFKLLMESIKKKNNKASA 868
Query: 728 LKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGR---------------VDVSSDE-ERD 771
+N+N +R + D+ D+ GE LGR VD ++E + D
Sbjct: 869 FRNVN---TRRATQRDL-DNAGE--------LGRSRGEQEGDEEEEGHIVDAEAEEGDAD 916
Query: 772 EEDAVQSHKKVN----------------------QEEDNDFEE------PEDEERMSERE 803
DA + K+ QEE N E +DEE E
Sbjct: 917 ASDAKRKEKQEEEVDYESEEEEEREGEENDDEDMQEERNPHREGARKTQEQDEEVGLGTE 976
Query: 804 EDDNTSNIGERFK-------IEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC------ 850
ED + + + + + ++ V+ V H + Y YD + +WC
Sbjct: 977 EDPSLPALLTQPRKPTHSQEPQGPEAMERRVQAVREIHPFIDDYQYDTEESLWCQVTVKL 1036
Query: 851 ---KLLFLPSNLF-------------------------EEKESKHLLKTDGINVNFISQY 882
K+ F S+L + E + +L T+GIN+ + +Y
Sbjct: 1037 PLMKINFDMSSLVVSLAHGAVIYATKGITRCLLNETTNNKNEKELVLNTEGINLPELFKY 1096
Query: 883 RHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHS 942
+LDL +LY NDIH +A+TYGIEAA RVI +E+K+VFAVYGI VDPRHLSLVADYM
Sbjct: 1097 AEVLDLRRLYSNDIHAIANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFE 1156
Query: 943 GTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQG 979
G Y +NR GIR N S +Q+MTFE + ++QA+M G
Sbjct: 1157 GVYKPLNRFGIRSNSSPLQQMTFETSFQFLKQATMLG 1193
>gi|148238249|ref|NP_001082182.1| polymerase (RNA) I polypeptide A, 194kDa [Xenopus laevis]
gi|18032797|gb|AAL56846.1|AF309686_1 RNA polymerase I large subunit [Xenopus laevis]
Length = 1730
Score = 783 bits (2023), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/1147 (40%), Positives = 661/1147 (57%), Gaps = 154/1147 (13%)
Query: 1 MDGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA S +AEA + QYLVPKDG+PL+GLIQDH++SGA +++R +
Sbjct: 594 FDGDEMNAHFPQSELGRAEAYTIACTDEQYLVPKDGTPLAGLIQDHMVSGANMTIRGCYF 653
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL 116
TR +YM LVYQ L ++ LPP I KP LWTGKQV+ST++IN+ P++ + +
Sbjct: 654 TREQYMELVYQGLTDKKGRVKLLPPAILKPHRLWTGKQVVSTLLINVIPENLIPLN---- 709
Query: 117 LSGILDKKQFGSTQY---------GLV-HAVWDTHVTIRHGELLSGILDKKQFGSTQYGL 166
L+G K + G + G ++ ++ V IR+GELL G+LDK +GS+ +GL
Sbjct: 710 LTG---KAKIGGKAWVKEQPRPIPGFSPDSMCESQVIIRNGELLCGVLDKAHYGSSSFGL 766
Query: 167 VHAVWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARR 225
VH ++ +G E + LL+CLA+LFT YL+ GFTLGV DILV D KR I+ + +
Sbjct: 767 VHCCYELYGGETSGKLLTCLARLFTAYLKLYRGFTLGVEDILVLPYADAKRQNIVEHSMQ 826
Query: 226 LGTEAACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCL 284
G A A L E + Q+A+ + Q +D ++K +++ N IN+VC+
Sbjct: 827 CGGRAIRAAFNLADAASDEEAQGKWQDAHLAKDQRDFNMVDLKFKEEVNQFNNEINKVCM 886
Query: 285 PEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPY 344
P GL FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SGR+LP F PY
Sbjct: 887 PFGLHRSFPENNLQLMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMPSGRSLPCFQPY 946
Query: 345 EVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTV 404
+ SPR+GGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V
Sbjct: 947 DFSPRSGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVV 1006
Query: 405 HYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLK--- 461
YD+TVRDSD S+IQ LYGEDGLDV K Q+L KQF F+ +N + I K + +L
Sbjct: 1007 QYDLTVRDSDGSIIQFLYGEDGLDVPKTQFLQPKQFPFIAENYEVIKQSKRLDEVLSRVN 1066
Query: 462 ----------------KHP---LSLALLLLLTFKS-----SGKPNFIFSPHRTKFTMDLL 497
KHP ++ LL + K + P + R + +L
Sbjct: 1067 TEQAEQHMHAIYRWKAKHPNPGQRISPFLLYSQKQLPAVKASCPVEEYENGRDFASRQVL 1126
Query: 498 EQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYT---KGRTDAS 554
E WY +++K +YR++ P P ++ ++PD + GS+SEN + +Y + + ++S
Sbjct: 1127 ESWYSVNEKTLSRYRRRASLLPDPCLAVWRPDLYLGSVSENFQSKMAQYGCAWEQQRNSS 1186
Query: 555 H------VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
H D ++ K +L +PG+ VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNV
Sbjct: 1187 HDMSSLTFDSLKTLLHLKWQRALCDPGDAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNV 1246
Query: 609 TLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIK 668
TLGIPRLREILM+A+ IKTP M +P L + K K+A +L K +TR+ +A+V+ K++++
Sbjct: 1247 TLGIPRLREILMVASSNIKTPMMSVPVL-NTKKAVKRAKQLKKRLTRVRLAEVIHKLEVE 1305
Query: 669 EWLEIS--PEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQ 726
E I + + Y+++F F+P YR + ++P ++ E +F K + AI KR +
Sbjct: 1306 ETFRIEEKSQKYQVYKIRFHFLPHEYYRQEKMLRPEGVLRFMESRFFKIMFDAI-KRKSS 1364
Query: 727 GLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAA--------------------LGRVDVSS 766
L + +R + DV D E +G E + A D
Sbjct: 1365 KLASFREVSTRRATQKDVGDGEAQGNEESQRAENEEAQANDNDDDDNDNNINNNNDDDDD 1424
Query: 767 DEERDEEDAVQSHKKVNQEEDNDFEE-----------------PED-EERMSEREEDDNT 808
D E + DA + ++ QEE+ D+E PE E +++ EE
Sbjct: 1425 DAEDGDADATDAKRRKKQEEEVDYESDEEAAEENNEEETEEKAPEAWGETLADEEE---- 1480
Query: 809 SNIGERFKIEFRDS-----TNVFVKDVVNQHNI---------VHKYSYDKKNHMWC---- 850
IG+ ++E + + KDV+ ++ I + YSYD + +WC
Sbjct: 1481 -RIGQEIEVESPTAVPGTPSQKLTKDVMAENRINDVLSLNPAIEDYSYDTEKSLWCEVTI 1539
Query: 851 -----KLLF--------------------LPSNLFEEKESKH-----LLKTDGINVNFIS 880
K+ F + L E +K +L T+GIN+ +
Sbjct: 1540 KLQLMKIYFDICSLVSSLAHNVIVHETSGITRCLLNETTNKQGDKELILNTEGINLYELF 1599
Query: 881 QYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMT 940
+Y +LD+ +LY NDIH +A+T+GIEAA RV+ +E+K+VFAVYGIEVDPRHLSLVADYM
Sbjct: 1600 KYSSILDITRLYSNDIHAIANTFGIEAALRVVEKEIKDVFAVYGIEVDPRHLSLVADYMC 1659
Query: 941 HSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQG 1000
GTY +NR G++ + S Q+MTFE + ++ A+M G D L++PSA +++G+ + G
Sbjct: 1660 FEGTYRPLNRIGMQSSSSPFQQMTFETSYKFLKDATMNGARDDLQSPSACLVVGKVVKGG 1719
Query: 1001 TGLFQLR 1007
TGLF L+
Sbjct: 1720 TGLFDLK 1726
>gi|427780187|gb|JAA55545.1| Putative rna polymerase iii large subunit [Rhipicephalus pulchellus]
Length = 1339
Score = 780 bits (2015), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/1147 (41%), Positives = 641/1147 (55%), Gaps = 142/1147 (12%)
Query: 2 DGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLT 57
DG NA S +AEAS + +V+ QYLVPKDG+PLSGLIQDHVI G+ L+++ F T
Sbjct: 206 DGDEMNAHLPQSPLAQAEASEVASVNRQYLVPKDGTPLSGLIQDHVIGGSLLTMQGRFFT 265
Query: 58 RAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELL 117
R +Y LV+ AL + I+ LPP I KP LWTGKQVLSTV++N P HG+
Sbjct: 266 REDYNQLVFGALTFVKIGIKLLPPAIQKPQMLWTGKQVLSTVLLNCIP-------HGKPP 318
Query: 118 SGILDKKQFGSTQY---GLVHAVWDT-HVTIRHGELLSGILDKKQFGSTQYGLVHAVWDT 173
+ K + + + G A + V IR GELL GILDK +G TQ+GLVH ++
Sbjct: 319 PTVEGKAKIPAKAWPKGGEAEAFMNEGDVIIRDGELLCGILDKAHYGPTQFGLVHVCYEL 378
Query: 174 HGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGTEAAC 232
+G + +LS A+LFT YLQ GFTLG+ DILV + DRKR +I+ KA+ G E A
Sbjct: 379 YGGAISSLVLSAFARLFTHYLQIFSGFTLGIEDILVTDKADRKRKRIMKKAKTQGDEVAI 438
Query: 233 NALGLPLDTDPEIISSQLQEAYASIPQFR-----AQIDRQYKSLLDKVTNNINQVCLPEG 287
ALGL + + E+ ++QL++ + R Q+D KS+ D V N IN+ C+P+G
Sbjct: 439 RALGL--ENEDELDAAQLEDRLRAAHVARNDRQMKQLDSSMKSVTDDVNNQINRACIPDG 496
Query: 288 LIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVS 347
L++ FP+NNLQ MV+SGAKG VN MQISCLLGQIELEG+R +M+SGRTLPSFL Y+ S
Sbjct: 497 LLKKFPSNNLQLMVQSGAKGGMVNCMQISCLLGQIELEGRRVPLMLSGRTLPSFLHYDTS 556
Query: 348 PRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYD 407
PRAGGFVDGRF+TGI+PQE+FFHCMAGREGL+DTAVKTSRSGYLQRCL+KHLEGL V YD
Sbjct: 557 PRAGGFVDGRFLTGIRPQEYFFHCMAGREGLVDTAVKTSRSGYLQRCLIKHLEGLMVCYD 616
Query: 408 MTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWI--------CSYKVILNL 459
TVRDSD S+IQ YGEDGLDV K Q L QF L N + + C +
Sbjct: 617 QTVRDSDGSVIQFQYGEDGLDVLKMQMLKPSQFPVLIKNSQAVINRDDIEQCERATDHDE 676
Query: 460 LKKHPLSLALLL---------------LLTFKSSGKPNFIFSPHRTKF--------TMDL 496
L+K ++ T S + + + H ++F +
Sbjct: 677 LRKLKRAVRKWRKKVDEDAEGESRRQSAFTLFSKTQGSLVREEHLSRFHNATSETARQAI 736
Query: 497 LEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGR------ 550
LE ++ LD++A K K P+ S + D H G++SE L + Y +
Sbjct: 737 LEAYFNLDERAHHKLNKSIVKRADPVCSKLRSDVHLGAVSERLDALIEDYVERNPHGLLL 796
Query: 551 TDASH-----------VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFH 599
D S VD+F +++ +N+ ++ +PGE VG+LAAQSIGEPSTQMTLNTFH
Sbjct: 797 ADESEEGQDTGKKTVTVDEFRKLVYMRNMKAICDPGEPVGLLAAQSIGEPSTQMTLNTFH 856
Query: 600 FAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMA 659
FAGRG+MNVTLGIPR+REILM+A+ I TP+M++ L P +E++A L +T + ++
Sbjct: 857 FAGRGEMNVTLGIPRMREILMVASANIATPTMDLHLL-QQPDIEERAEELRVKITSVNLS 915
Query: 660 DVLEKVKIKEWLEIS--PEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELE 717
VLE+V +KE L + E + Y++ F F+P YR K P++I+ + E FL+ L
Sbjct: 916 QVLEEVSVKEMLHVKGRSERYRRYRVHFKFLPRRAYRKKLQATPARILRYMETAFLRRLI 975
Query: 718 VAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRVDV-----SSDEERDE 772
AI ++ Q +R + +E AE G A D SSDE +
Sbjct: 976 DAIKRKMEQVSSE---RMTRTTKARERRGEEAGSAEDTGMAPPCPDADEGGESSDEGEGD 1032
Query: 773 EDAVQSHKK--------------------VNQEEDNDFE-EPEDEERMSEREEDDNTSNI 811
D V ++ EE D E P E + EE +++I
Sbjct: 1033 GDTVARQAAARHTQEREYEEAEEEERVAAMSDEEMLDGETAPPVESSLPSAEEGTTSNDI 1092
Query: 812 GERFKIEFRDSTNVFVK-----DVVNQHNIVHKYSYDKKNHMWCKLLFLP---------S 857
+ RD +K VV + V +Y YD WC F +
Sbjct: 1093 FVSLQETIRDEKAEKLKQARIFSVVKYNTWVLEYDYDDAKEEWCTFTFQLELKGSKFDFA 1152
Query: 858 NLFEEKESK-------------------------HLLKTDGINVNFISQYRHLLDLNKLY 892
+L EE+ +K +L+T+G+N + +Y ++DL ++Y
Sbjct: 1153 SLVEEESAKAVFHSVPNITRAFLVKDTKDKSGCGKMLQTEGVNFVEMFRYGEIIDLKRIY 1212
Query: 893 VNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNG 952
NDIH +A+T+GIEAA I REV NVFAVYGIEVDPRHL LVADYMT G+Y A NR
Sbjct: 1213 SNDIHAIANTFGIEAARTAIAREVANVFAVYGIEVDPRHLLLVADYMTFDGSYRACNRIA 1272
Query: 953 IRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNREKK 1012
+ N S +Q+MTFE + ++ A++ G ED L +PSAR+++G+ GTG QLR +
Sbjct: 1273 MENNASPLQQMTFETTMNFLKSATLAGTEDHLNSPSARLVVGRVVPLGTGCMQLRQPQTP 1332
Query: 1013 KKKVEAK 1019
K+ ++
Sbjct: 1333 NFKLRSR 1339
>gi|427792959|gb|JAA61931.1| Putative rna polymerase iii large subunit, partial [Rhipicephalus
pulchellus]
Length = 1661
Score = 780 bits (2014), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/1147 (41%), Positives = 641/1147 (55%), Gaps = 142/1147 (12%)
Query: 2 DGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLT 57
DG NA S +AEAS + +V+ QYLVPKDG+PLSGLIQDHVI G+ L+++ F T
Sbjct: 528 DGDEMNAHLPQSPLAQAEASEVASVNRQYLVPKDGTPLSGLIQDHVIGGSLLTMQGRFFT 587
Query: 58 RAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELL 117
R +Y LV+ AL + I+ LPP I KP LWTGKQVLSTV++N P HG+
Sbjct: 588 REDYNQLVFGALTFVKIGIKLLPPAIQKPQMLWTGKQVLSTVLLNCIP-------HGKPP 640
Query: 118 SGILDKKQFGSTQY---GLVHAVWDT-HVTIRHGELLSGILDKKQFGSTQYGLVHAVWDT 173
+ K + + + G A + V IR GELL GILDK +G TQ+GLVH ++
Sbjct: 641 PTVEGKAKIPAKAWPKGGEAEAFMNEGDVIIRDGELLCGILDKAHYGPTQFGLVHVCYEL 700
Query: 174 HGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGTEAAC 232
+G + +LS A+LFT YLQ GFTLG+ DILV + DRKR +I+ KA+ G E A
Sbjct: 701 YGGAISSLVLSAFARLFTHYLQIFSGFTLGIEDILVTDKADRKRKRIMKKAKTQGDEVAI 760
Query: 233 NALGLPLDTDPEIISSQLQEAYASIPQFR-----AQIDRQYKSLLDKVTNNINQVCLPEG 287
ALGL + + E+ ++QL++ + R Q+D KS+ D V N IN+ C+P+G
Sbjct: 761 RALGL--ENEDELDAAQLEDRLRAAHVARNDRQMKQLDSSMKSVTDDVNNQINRACIPDG 818
Query: 288 LIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVS 347
L++ FP+NNLQ MV+SGAKG VN MQISCLLGQIELEG+R +M+SGRTLPSFL Y+ S
Sbjct: 819 LLKKFPSNNLQLMVQSGAKGGMVNCMQISCLLGQIELEGRRVPLMLSGRTLPSFLHYDTS 878
Query: 348 PRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYD 407
PRAGGFVDGRF+TGI+PQE+FFHCMAGREGL+DTAVKTSRSGYLQRCL+KHLEGL V YD
Sbjct: 879 PRAGGFVDGRFLTGIRPQEYFFHCMAGREGLVDTAVKTSRSGYLQRCLIKHLEGLMVCYD 938
Query: 408 MTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWI--------CSYKVILNL 459
TVRDSD S+IQ YGEDGLDV K Q L QF L N + + C +
Sbjct: 939 QTVRDSDGSVIQFQYGEDGLDVLKMQMLKPSQFPVLIKNSQAVINRDDIEQCERATDHDE 998
Query: 460 LKKHPLSLALLL---------------LLTFKSSGKPNFIFSPHRTKF--------TMDL 496
L+K ++ T S + + + H ++F +
Sbjct: 999 LRKLKRAVRKWRKKVDEDAEGESRRQSAFTLFSKTQGSLVREEHLSRFHNATSETARQAI 1058
Query: 497 LEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGR------ 550
LE ++ LD++A K K P+ S + D H G++SE L + Y +
Sbjct: 1059 LEAYFNLDERAHHKLNKSIVKRADPVCSKLRSDVHLGAVSERLDALIEDYVERNPHGLLL 1118
Query: 551 TDASH-----------VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFH 599
D S VD+F +++ +N+ ++ +PGE VG+LAAQSIGEPSTQMTLNTFH
Sbjct: 1119 ADESEEGQDTGKKTVTVDEFRKLVYMRNMKAICDPGEPVGLLAAQSIGEPSTQMTLNTFH 1178
Query: 600 FAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMA 659
FAGRG+MNVTLGIPR+REILM+A+ I TP+M++ L P +E++A L +T + ++
Sbjct: 1179 FAGRGEMNVTLGIPRMREILMVASANIATPTMDLHLL-QQPDIEERAEELRVKITSVNLS 1237
Query: 660 DVLEKVKIKEWLEIS--PEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELE 717
VLE+V +KE L + E + Y++ F F+P YR K P++I+ + E FL+ L
Sbjct: 1238 QVLEEVSVKEMLHVKGRSERYRRYRVHFKFLPRRAYRKKLQATPARILRYMETAFLRRLI 1297
Query: 718 VAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRVDV-----SSDEERDE 772
AI ++ Q +R + +E AE G A D SSDE +
Sbjct: 1298 DAIKRKMEQVSSE---RMTRTTKARERRGEEAGSAEDTGMAPPCPDADEGGESSDEGEGD 1354
Query: 773 EDAVQSH--------------------KKVNQEEDNDFE-EPEDEERMSEREEDDNTSNI 811
D V ++ EE D E P E + EE +++I
Sbjct: 1355 GDTVARQAAARHTQEREYEEAEEEERVAAMSDEEMLDGETAPPVESSLPSAEEGTTSNDI 1414
Query: 812 GERFKIEFRDSTNVFVK-----DVVNQHNIVHKYSYDKKNHMWCKLLFLP---------S 857
+ RD +K VV + V +Y YD WC F +
Sbjct: 1415 FVSLQETIRDEKAEKLKQARIFSVVKYNTWVLEYDYDDAKEEWCTFTFQLELKGSKFDFA 1474
Query: 858 NLFEEKESK-------------------------HLLKTDGINVNFISQYRHLLDLNKLY 892
+L EE+ +K +L+T+G+N + +Y ++DL ++Y
Sbjct: 1475 SLVEEESAKAVFHSVPNITRAFLVKDTKDKSGCGKMLQTEGVNFVEMFRYGEIIDLKRIY 1534
Query: 893 VNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNG 952
NDIH +A+T+GIEAA I REV NVFAVYGIEVDPRHL LVADYMT G+Y A NR
Sbjct: 1535 SNDIHAIANTFGIEAARTAIAREVANVFAVYGIEVDPRHLLLVADYMTFDGSYRACNRIA 1594
Query: 953 IRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNREKK 1012
+ N S +Q+MTFE + ++ A++ G ED L +PSAR+++G+ GTG QLR +
Sbjct: 1595 MENNASPLQQMTFETTMNFLKSATLAGTEDHLNSPSARLVVGRVVPLGTGCMQLRQPQTP 1654
Query: 1013 KKKVEAK 1019
K+ ++
Sbjct: 1655 SFKLRSR 1661
>gi|221044872|dbj|BAH14113.1| unnamed protein product [Homo sapiens]
Length = 1086
Score = 774 bits (1999), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/1100 (41%), Positives = 632/1100 (57%), Gaps = 151/1100 (13%)
Query: 43 VISGAKLSLRDTFLTRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIIN 102
++SGA ++ R F TR YM LVY+ L ++ L P+I KP PLWTGKQV+ST++IN
Sbjct: 1 MVSGASMTTRGCFFTREHYMELVYRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLIN 60
Query: 103 LTPKDKVIIRHGELLSG---ILDKKQFGSTQYGLV----HAVWDTHVTIRHGELLSGILD 155
+ P+D + + LSG I K T + ++ ++ V IR GELL G+LD
Sbjct: 61 IIPEDHIPLN----LSGKAKITGKAWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLD 116
Query: 156 KKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDR 214
K +GS+ YGLVH ++ +G E + +L+CLA+LFT YLQ GFTLGV DILV+ + D
Sbjct: 117 KAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADV 176
Query: 215 KRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLD 273
KR +II ++ G +A AL LP + + + Q+A+ Q ID ++K ++
Sbjct: 177 KRQRIIEESTHCGPQAVRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVN 236
Query: 274 KVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMV 333
+N IN+ C+P GL FP N+LQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M
Sbjct: 237 HYSNEINKACMPFGLHRQFPENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMA 296
Query: 334 SGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQR 393
SG++LP F PYE +PRAGGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQR
Sbjct: 297 SGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQR 356
Query: 394 CLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSY 453
C++KHLEGL V YD+TVRDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I
Sbjct: 357 CIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKS 416
Query: 454 KVILNLLKKHPLSLALLLLLTFK--SSGKPNFIF-------------------------S 486
+ + +L + AL K S PN +
Sbjct: 417 QHLHEVLSRADPKKALHHFRAIKKWQSKHPNTLLRRGAFLSYSQKIQEAVKALKLESENR 476
Query: 487 PHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKY 546
R+ T ++L WY+LD+++R+KY+KK ACP P +S ++PD +F S+SE V Y
Sbjct: 477 NGRSPGTQEMLRMWYELDEESRRKYQKKAAACPDPSLSVWRPDIYFASVSETFETKVDDY 536
Query: 547 TK---GRTDASH------VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNT 597
++ +T+ S+ +D+ ++ K SL PGE VG+LAAQSIGEPSTQMTLNT
Sbjct: 537 SQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNT 596
Query: 598 FHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRIT 657
FHFAGRG+MNVTLGIPRLREILM+A+ IKTP M +P L + K K+ L K +TR+
Sbjct: 597 FHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVL-NTKKALKRVKSLKKQLTRVC 655
Query: 658 MADVLEKVKIKE--WLEISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKE 715
+ +VL+K+ ++E +E YQ++F F+P Y+ + ++P I+ E +F K
Sbjct: 656 LGEVLQKIDVQESFCMEEKQNKFQVYQLRFQFLPHAYYQQEKCLRPEDILRFMETRFFKL 715
Query: 716 LEVAIAKR--AAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGR------------ 761
L +I K+ A +N+N +R + D+ D+ GE LGR
Sbjct: 716 LMESIKKKNNKASAFRNVN---TRRATQRDL-DNAGE--------LGRSRGEQEGDEEEE 763
Query: 762 ---VDVSSDE-ERDEEDAVQSHKKVN----------------------QEEDNDFEE--- 792
VD ++E + D DA + K+ QEE N E
Sbjct: 764 GHIVDAEAEEGDADASDAKRKEKQEEEVDYESEEEEEREGEENDDEDMQEERNPHREGAR 823
Query: 793 ---PEDEERMSEREEDDNTSNIGERFK-------IEFRDSTNVFVKDVVNQHNIVHKYSY 842
+DEE EED + + + + + ++ V+ V H + Y Y
Sbjct: 824 KTQEQDEEVGLGTEEDPSLPALLTQPRKPTHSQEPQGPEAMERRVQAVREIHPFIDDYQY 883
Query: 843 DKKNHMWC---------KLLFLPSNLF-------------------------EEKESKHL 868
D + +WC K+ F S+L + E + +
Sbjct: 884 DTEESLWCQVTVKLPLMKINFDMSSLVVSLAHGAVIYATKGITRCLLNETTNNKNEKELV 943
Query: 869 LKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 928
L T+GIN+ + +Y +LDL +LY NDIH +A+TYGIEAA RVI +E+K+VFAVYGI VD
Sbjct: 944 LNTEGINLPELFKYAEVLDLRRLYSNDIHAIANTYGIEAALRVIEKEIKDVFAVYGIAVD 1003
Query: 929 PRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPS 988
PRHLSLVADYM G Y +NR GIR N S +Q+MTFE + ++QA+M G D LR+PS
Sbjct: 1004 PRHLSLVADYMCFEGVYKPLNRFGIRSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPS 1063
Query: 989 ARVMLGQECRQGTGLFQLRN 1008
A +++G+ R GTGLF+L+
Sbjct: 1064 ACLVVGKVVRGGTGLFELKQ 1083
>gi|156379629|ref|XP_001631559.1| predicted protein [Nematostella vectensis]
gi|156218601|gb|EDO39496.1| predicted protein [Nematostella vectensis]
Length = 1242
Score = 769 bits (1985), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/1114 (39%), Positives = 640/1114 (57%), Gaps = 145/1114 (13%)
Query: 1 MDGWTQNASHF-----LKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTF 55
DG NA HF +AEA + + + YLVPKDG+PLSGLIQDH++SG +++R
Sbjct: 131 FDGDEMNA-HFPQNELARAEAYTIASTNFNYLVPKDGTPLSGLIQDHMVSGVLMTIRGRM 189
Query: 56 LTRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTP---------- 105
+ +Y LVY AL N I L P I KP W+GKQV+ST+++NL P
Sbjct: 190 FNKLDYQQLVYGALNFKNQPIELLMPCILKPTQFWSGKQVISTILLNLIPLGSKRLNLKG 249
Query: 106 KDKVIIRHGELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYG 165
K K+ ++ ++QF + + ++ V IR G LL G+LDK +G+T YG
Sbjct: 250 KAKISAKNWNTRK---PRRQFLDLEVLKGDDMSESEVVIRDGHLLCGVLDKAHYGNTPYG 306
Query: 166 LVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARR 225
LVH + +G + LLS LA++FT +LQ GFTLGV+DILV + D+ R K+I K R
Sbjct: 307 LVHCCNELYGGVMSGELLSALARVFTSFLQFHGFTLGVKDILVTERADKIRRKLIAKGRV 366
Query: 226 LGTEAACNALGLPLDTDPEIISSQLQEAY-ASIPQFRAQIDRQYKSLLDKVTNNINQVCL 284
G +AA +A G+P D + +++Q A+ S ++D K D ++IN+ CL
Sbjct: 367 SGKDAATSAFGMPEDCHRSDLEARMQRAHHNSDGTDMKELDLCMKKKTDHYQDSINKACL 426
Query: 285 PEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPY 344
P GL + FP NNLQ MV+SGAKGS VN MQISCLLGQIELEG+RP +M+SGR+LPSFLPY
Sbjct: 427 PLGLYQRFPGNNLQLMVQSGAKGSAVNCMQISCLLGQIELEGRRPPIMLSGRSLPSFLPY 486
Query: 345 EVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTV 404
+ SPRAGGFVDGRF+TGI+PQE+FFHCMAGREGL+DTAVKTSRSGYLQRCL+KHLEGL V
Sbjct: 487 DTSPRAGGFVDGRFLTGIRPQEYFFHCMAGREGLVDTAVKTSRSGYLQRCLIKHLEGLQV 546
Query: 405 HYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLL---- 460
YD+TVRDSD S++Q YGEDGLD+ K ++L+DKQ+ F+ +N +LL
Sbjct: 547 AYDLTVRDSDGSIVQFYYGEDGLDILKTKFLSDKQYPFMVENYMAFLQQLNPKDLLGHLN 606
Query: 461 ---------------KKHPL---SLALLLLLTFKS------SGKPNFIFSPH-RTKFTMD 495
+KHP L F++ GK + + R+K ++
Sbjct: 607 PDKANKLESKIHKWQRKHPSVDKQNRTSAFLAFEADNLEEVQGKHDTVPEKFGRSKAQLE 666
Query: 496 LLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASH 555
L + W + + +Y K + CP P++S +PD FG++SE ++ ++ Y + D
Sbjct: 667 LFKMWTEAPSSVKSRYSKLYSRCPPPVLSKLRPDRSFGAVSEKISHTIANYIRTNPDKCL 726
Query: 556 VD------------KFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGR 603
D KF +++ K L SL +PGE VG+LAAQSIGEPSTQMTLNTFHFAGR
Sbjct: 727 QDDGDQTSKGVKASKFRSLMYLKTLRSLVDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGR 786
Query: 604 GDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLE 663
G+MNVTLGIPR+REILM A+ IKTP+M++P L K+ K+A +L + + R+ ++ VL
Sbjct: 787 GEMNVTLGIPRMREILMTASANIKTPTMDMPLLAGK-KVIKRAKKLQQKLNRVMLSQVLR 845
Query: 664 KVKIKEWLEISPEPH----MNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVA 719
+ + W +SP+ +Y++K F+P +Y D+ P+KI+ + E F K+L
Sbjct: 846 SIDV--WESLSPKESGTRMRSYRIKMKFLPKSVYEDEFYCSPAKILHYVETVFFKKLIAV 903
Query: 720 IAKRAAQGLKN--MNIEQSRDQ-MEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAV 776
+ K + ++ + + +S++Q + + DD+ + AE +S DE D V
Sbjct: 904 VQKTLSSHPRSHPLRLRRSKNQHLSSSLLDDDNDNAE----------LSGDEGEDGAYDV 953
Query: 777 QSHKKVNQEEDNDFEEPEDEERMSEREEDDNTSN----IGERFKIEFRDSTNVFV----- 827
+ K++ E+ +E P+++E ERE + + IGE +FR S + F+
Sbjct: 954 KQRKRL--EQHASYEAPDEDEMEIERELQNGLESKHFFIGE---TKFRQSEDSFIFIEEE 1008
Query: 828 ----------------------KDVVNQHNIVHKYSYDKKNHMWCKLLFL---------- 855
V+ + + Y YD + WC+++
Sbjct: 1009 TQTKRAGRQQRGRKLLLRHSRRYHFVSSDSHIVSYRYDNEEEQWCEVVIKVPRHSGNSLP 1068
Query: 856 --------PSNLFE----------EKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIH 897
P+ + E E+++ +LKT+G+N+ +Y ++++++KLY NDIH
Sbjct: 1069 FGTVVQIEPAVVHETPGINRCFLVEEKTNSVLKTEGVNLQVAFRYPNIINVDKLYTNDIH 1128
Query: 898 YMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNP 957
+A TYGIEAA R I +EVKNVF YGI VDPRHL+LV+DYMT+ G A NR GI +
Sbjct: 1129 AVARTYGIEAAARAITKEVKNVFGGYGIHVDPRHLTLVSDYMTYEGKIKAFNRIGIESSA 1188
Query: 958 SFIQKMTFEMPLEKIRQASMQGREDSLRAPSARV 991
S QKM+FE +R A + G +SL++PS+R+
Sbjct: 1189 SPFQKMSFETTTHFLRGAVLSGDMESLKSPSSRL 1222
>gi|321464634|gb|EFX75641.1| hypothetical protein DAPPUDRAFT_323145 [Daphnia pulex]
Length = 1740
Score = 767 bits (1980), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/1127 (40%), Positives = 649/1127 (57%), Gaps = 128/1127 (11%)
Query: 1 MDGWTQNASHF-----LKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTF 55
DG NA HF ++E + V QYLVPKDG+PLSGLIQDH+I+G KL++R F
Sbjct: 616 FDGDEMNA-HFPQGEVARSEGYNIAAVPHQYLVPKDGTPLSGLIQDHMIAGVKLTMRGQF 674
Query: 56 LTRAEYMNLVYQALCILNTEIRT--LPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRH 113
R +Y LV+ L + +T LPPTI KP+ LW+GKQ+LSTVIINLTPK K +I
Sbjct: 675 FNRTDYQQLVFAGLGGREYDGKTKLLPPTILKPVALWSGKQILSTVIINLTPKGKKLINM 734
Query: 114 G--------ELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYG 165
+ + + K + G T+ +++ + V I+HGELL G+LDK +G+T Y
Sbjct: 735 DSTAKISVKDWQTVPVRKWEGGGTELQ-GNSMTENEVVIQHGELLVGVLDKMHYGATSYS 793
Query: 166 LVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARR 225
LVH + +G +++ LLSC A+LFT YLQ GF+LGV DILV D+KR KI+ +
Sbjct: 794 LVHLFNELYGGQYSCRLLSCFARLFTTYLQLKGFSLGVEDILVTPRADKKRRKILKRLET 853
Query: 226 LGTEAACNALGL-PLDTDP---EIISSQLQEAYASIPQFRAQ-IDRQYKSLLDKVTNNIN 280
+G A A+G+ P + + EI+ ++QE + S + IDR+YK + D++ N +N
Sbjct: 854 VGDGVATKAVGVTPQEVEKSGMEIVRKKMQEIHFSQNSLKKMAIDREYKGVTDQINNEVN 913
Query: 281 QVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPS 340
+ C+P GL + FP NNL M++SGAKGS+VN MQISCLLGQIELEGKRP +M+SGR+LPS
Sbjct: 914 RACIPGGLHKLFPDNNLALMIQSGAKGSSVNAMQISCLLGQIELEGKRPPLMISGRSLPS 973
Query: 341 FLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLE 400
F+ ++ SPRAGGF+ GRFMTGI+PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLE
Sbjct: 974 FVAFDTSPRAGGFISGRFMTGIRPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLE 1033
Query: 401 GLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFL---EDNIKWI------- 450
G++V YD TVRDSD ++Q LYGEDGLD+ K Q+L DK FL D ++ I
Sbjct: 1034 GVSVAYDGTVRDSDGLVLQFLYGEDGLDICKSQFLNDKGIPFLVANRDCVRLIEPVSDES 1093
Query: 451 ------CSYKVILNLLKKH------PLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLE 498
+ K++ L KH + + L + + K +F + FT +E
Sbjct: 1094 EQKEVDHAKKLVRRWLNKHGSLSKEKVRKSGFLNYSSQCGIKDDFEKGKNGRTFTAFEIE 1153
Query: 499 Q-WYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVD 557
Q W L + R KY KK ++ P P+ + F + E L + +Y
Sbjct: 1154 QAWLALSAEERAKYSKKTESPPDPVNAKFSFTRNVDVFDEQLNTMMSRYLDRPGVPIGKK 1213
Query: 558 KFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLRE 617
+ +++ K + + PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVTLGIPRLRE
Sbjct: 1214 ELTRLVYNKAVAASCEPGEPVGMLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLRE 1273
Query: 618 ILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEIS-PE 676
ILM+A ++TPSM+IP L PK +KA +L +TR+T+ADVLE V + E L IS E
Sbjct: 1274 ILMVAAANLQTPSMDIPILG--PKALRKAEKLKLKLTRVTLADVLENVYVTEGLSISGGE 1331
Query: 677 PHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQS 736
Y +KF F+P Y+D+ VKP +++ +FE+ FL + + K+ A+ ++ +
Sbjct: 1332 RARIYGLKFNFLPHASYKDRFCVKPKQVLHYFEKTFLPRILLPNIKKEAEAQGKQSLFEC 1391
Query: 737 RDQMED---DVEDD--------------------------EGEGAEGAGAALGRVDVSS- 766
+ ++ +V++D EG A A R +
Sbjct: 1392 KSAVQPRKANVKEDGAEGAGEEGETTANGRAEKDDEDDFDEGSNANDDDFATQRAKDADE 1451
Query: 767 --------------DEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNTSNIG 812
+E+ E+D + + EE +D ++P +E+ ++E + + +
Sbjct: 1452 HEYEDEDEADKEPVNEDGFEDDTPKPKEDAEGEETDD-DQP-NEKTLNEEDAAFDVTPSK 1509
Query: 813 ERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNLFEEK--------- 863
E E ++ V+ +H+ + Y +D + C + L LF EK
Sbjct: 1510 EEMDQETAEAYETHKLTVIQEHSWICDYDFDSTGFLSCTVT-LSVPLFVEKVDLSSSLKK 1568
Query: 864 ---------------------ESKH---LLKTDGINVNFISQYRHLLDLNKLYVNDIHYM 899
ES + ++KTDG+N+ + Y +LDLN+LY NDIH +
Sbjct: 1569 WAESSVVHHVMKIKRAFVVAPESDNGDIIIKTDGVNIQAMFDYAGILDLNRLYTNDIHEV 1628
Query: 900 ASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSF 959
A YG+EAA+RVI++EV NVF VYGI VD RHLSL+A +MT G+Y +R+G+ S
Sbjct: 1629 AKHYGVEAASRVIVKEVNNVFKVYGITVDHRHLSLIASFMTSGGSYRPFSRHGMADCTSP 1688
Query: 960 IQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
Q+M+FE E ++ A++QG+ D L+ PS+R+++G +GTG F L
Sbjct: 1689 FQQMSFETATEFLKNATLQGKTDFLKTPSSRLIMGLPGCEGTGSFNL 1735
>gi|332239236|ref|XP_003268812.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
RPA1 [Nomascus leucogenys]
Length = 1723
Score = 762 bits (1968), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/1144 (40%), Positives = 646/1144 (56%), Gaps = 152/1144 (13%)
Query: 2 DGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLT 57
DG NA S +AEA L QYLVPKDG PL+GLIQDH++SGA ++ R F T
Sbjct: 590 DGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFT 649
Query: 58 RAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELL 117
R +YM LVY+ L ++ L P+I KP PLWTGKQV+ST++IN+ P+D V + L
Sbjct: 650 REQYMELVYRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHVPLN----L 705
Query: 118 SG---ILDKKQFGSTQYGLV----HAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAV 170
SG I K T + ++ ++ V IR GELL G+LDK +GS+ YGLVH
Sbjct: 706 SGKAKITGKAWVKETPRSIPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCC 765
Query: 171 WDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGTE 229
++ +G E + +L+CLA+LFT YLQ GFTLGV DILV+ + D KR +II ++ G
Sbjct: 766 YEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGPR 825
Query: 230 AACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCLPEGL 288
A AL LP + + + Q+A+ Q ID ++K ++ +N IN+ C+P GL
Sbjct: 826 AVRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGL 885
Query: 289 IEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSP 348
FP N+LQ MV+SGAKGSTVNTMQISCLLGQIELEG++P +M SG++LP F P
Sbjct: 886 HRQFPENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRKPPLMASGKSLPCFELMSXHP 945
Query: 349 RAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDM 408
RAGGF +TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V YD+
Sbjct: 946 RAGGF-----LTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDL 1000
Query: 409 TVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLA 468
TVRDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I + + +L + A
Sbjct: 1001 TVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHLHEVLSRADPKKA 1060
Query: 469 LLLLLTFK--SSGKPNFIF-------------------------SPHRTKFTMDLLEQWY 501
L K S PN + R+ T ++L WY
Sbjct: 1061 LRHFRAIKKWQSKHPNTLLRRGAFLSYSQKIQEAVKALNLESENRNGRSPGTQEMLRMWY 1120
Query: 502 QLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK---GRTDASH--- 555
+LD+++R+KY+KK ACP P +S ++PD +F S+SE V Y++ +T+ S+
Sbjct: 1121 ELDEESRRKYQKKAAACPDPSLSVWRPDIYFASVSETFETKVDDYSQEWAAQTEKSYEKS 1180
Query: 556 ---VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGI 612
+D+ ++ K SL PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVTLGI
Sbjct: 1181 ELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGI 1240
Query: 613 PRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKE--W 670
PRLREILM+A+ IKTP M +P L + K K+ L K +TR+ + +VL+K+ ++E
Sbjct: 1241 PRLREILMVASANIKTPMMSVPVL-NTKKALKRVKSLKKQLTRVCLGEVLQKIDVQESFC 1299
Query: 671 LEISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKR--AAQGL 728
+E YQ++F F+P Y+ + ++P I+ E +F K L +I K+ A
Sbjct: 1300 MEEKQNKFRVYQLRFQFLPHAYYQQEKCLRPEDILRFMETRFFKLLMESIKKKNNKASAF 1359
Query: 729 KNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGR-------VDVSSDE-ERDEEDAVQSHK 780
+++N +R + D+ D+ GE G G VD ++E + D DA + K
Sbjct: 1360 RSVN---TRRATQRDL-DNAGESRRSRGEQEGDEEEEGHIVDAEAEEGDADASDAKRKEK 1415
Query: 781 KVN----------------------QEEDNDFEE------PEDEERMSEREEDDNTSNIG 812
+ QEE N E +DEE S EED + +
Sbjct: 1416 QEEEVDYESEEEEEREGEENDDEDMQEERNPHREGARKTQEQDEEVGSGAEEDPSLPALL 1475
Query: 813 ERFK-------IEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC--------------K 851
+ + + ++ V+ V H+ + Y YD + +WC K
Sbjct: 1476 TQPRKPTHSQEPQGPEAMERRVQAVREIHSFIDDYQYDTEESLWCQVSVALQCGGIPLMK 1535
Query: 852 LLFLPSNLF-------------------------EEKESKHLLKTDGINVNFISQYRHLL 886
+ F S+L + E + +L T+GIN+ + +Y +L
Sbjct: 1536 INFDMSSLVVSLAHGAVIYATKGITRCLLNETTNNKNEKELVLNTEGINLPELFKYAEVL 1595
Query: 887 DLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG---IEVDPRHLSLVADYMTHSG 943
DL +LY NDIH MA+TYGIEAA RVI +E+K+VFAVYG +++ P+ L D M G
Sbjct: 1596 DLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGKRSLQITPQGLGASQDXMCFEG 1655
Query: 944 TYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGL 1003
Y +NR GIR N S +Q+MTFE + ++QA++ G D LR+PSA +++G+ + GTGL
Sbjct: 1656 VYKPLNRFGIRSNSSPLQQMTFETSFQFLKQATLLGSHDELRSPSACLVVGKVVKGGTGL 1715
Query: 1004 FQLR 1007
F+L+
Sbjct: 1716 FELK 1719
>gi|443724446|gb|ELU12458.1| hypothetical protein CAPTEDRAFT_154177 [Capitella teleta]
Length = 1442
Score = 749 bits (1933), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/1116 (39%), Positives = 630/1116 (56%), Gaps = 129/1116 (11%)
Query: 2 DGWTQNASHF-----LKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA HF +AE L QYLVPKDG+PL+GLIQDH+ISG L++R F
Sbjct: 340 DGDEMNA-HFPQNELARAEGYNLAATDYQYLVPKDGTPLAGLIQDHMISGVLLTMRGRFF 398
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL 116
+ +Y LVY AL ++ LPP++ KP +W+GKQVLSTV++N+ P++ +
Sbjct: 399 HKDDYHLLVYSALTDKRGRVKLLPPSMLKPHVMWSGKQVLSTVLLNVLPENATPLN---- 454
Query: 117 LSGI--LDKKQF--GSTQYGLV-------HAVWDTHVTIRHGELLSGILDKKQFGSTQYG 165
L+G +D K + G + L + + ++ V I HGELL G+LDK +G+T YG
Sbjct: 455 LTGKSKIDGKNWSQGKARDWLAGGTPLKGNEMTESEVVIMHGELLVGVLDKGHYGNTPYG 514
Query: 166 LVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARR 225
LVHAV++ +G A LL+ LAKLFT++LQ GFTLGV DILV+++ ++KR K++ A
Sbjct: 515 LVHAVYEIYGGPAAGKLLTSLAKLFTIFLQFRGFTLGVEDILVKEKANKKRRKVMKAAAL 574
Query: 226 LGTEAACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLP 285
G A L + + +Q A+ S +D K D++ N+I + C+P
Sbjct: 575 SGPSVVAKAFHLEGSPSEQELHDAVQAAHWSKDDELKDLDLSMKGNTDQLQNDIAKACIP 634
Query: 286 EGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYE 345
GL + FP NNLQ MV+SGAKGS+VN MQISCLLGQIELEG+RP + SGR+LPSF PY+
Sbjct: 635 HGLHKIFPHNNLQLMVQSGAKGSSVNCMQISCLLGQIELEGRRPPISFSGRSLPSFQPYD 694
Query: 346 VSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVH 405
SP+AGGF+ RF+TGI+PQE++FHCMAGREGL+DTAVKTSRSGYLQRC++KHLEG+ +
Sbjct: 695 PSPKAGGFIATRFLTGIRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGIQIS 754
Query: 406 YDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPL 465
YD+TVRDSD S++Q YG D LD+ K YL Q+SFL +N K + + + + +
Sbjct: 755 YDLTVRDSDGSVLQFNYGGDSLDILKTPYLKSNQYSFLIENEKALMNKEERKAVFSQMDC 814
Query: 466 SLA----------------------LLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQL 503
S A L L +S N R++ T+ L + W L
Sbjct: 815 SSAEKHWGKLRKWKKKSKSQDGRSTAFLKLCKESKVDSNGQCKNGRSQKTLALCQMWQDL 874
Query: 504 DDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGR-----TDASHVDK 558
+ KY + P ++S FQPD GS+SEN + Y K T
Sbjct: 875 SQDEKHKYAAYTGSGPDTVLSRFQPDRFIGSVSENFERLIQDYVKVNPMKVSTQGMSTSD 934
Query: 559 FYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREI 618
F +++ ++L S+ PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVTLGIPRLREI
Sbjct: 935 FKRLMYLRHLKSVVPPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREI 994
Query: 619 LMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPH 678
LM+A+ IKTP+ME P LP E A L + + ++ ++ VLE + E L IS +
Sbjct: 995 LMVASDNIKTPNMECPVLPSA---EHAAIGLKRKLNKVLLSQVLEFAETSEKLSISKD-S 1050
Query: 679 MN---YQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQ 735
+N Y+++ F+PA MY+ + ++K I+ + E KFLK + AI K Q +K +
Sbjct: 1051 LNKRLYKVRLHFLPARMYKQEYNLKADGILSYVETKFLKLIMNAI-KLYIQKMKKKQLVS 1109
Query: 736 SRDQMEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPED 795
+ E +D E A + D++ + DA + Q ED D+E E+
Sbjct: 1110 YGNLKEKKKKDGE--------TAEEEDEDIVDDDLHDGDATADKVRKRQMEDQDYEGEEE 1161
Query: 796 EERMSEREEDDNTSNIG------ERFKI-EFRDSTNVFVKDVVNQ--------------- 833
++R + EE++ ++G E + E + N F ++ V +
Sbjct: 1162 DQREAGLEEEEKGEDLGLEESDTEDIDLSELTEDVNKFERNSVEETFKRDKKSKEVKMDP 1221
Query: 834 -------HNIVH--KYSYDKKNHMWCKL-------------------------------- 852
H + H YSYD K+ +WC+
Sbjct: 1222 RRINAVLHRVEHLSSYSYDAKHFLWCEATYSYDIMEKRIDIASIVEMEARKAVVTEKPGI 1281
Query: 853 --LFLPSNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANR 910
F+ + +E + KT+G+N+ + ++ +LDL+KLY N+I MA YGIEAA
Sbjct: 1282 SRCFVTDDKTIGREGLQVFKTEGVNMRELHRHDQILDLHKLYSNNIMAMAQVYGIEAACS 1341
Query: 911 VIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLE 970
VI++E+++VF+ YGI VDPRHLSLVADYMT G Y A NR G++ N S IQKMTFE ++
Sbjct: 1342 VIMKEIRDVFSAYGITVDPRHLSLVADYMTFEGEYKAFNRFGLQSNASPIQKMTFETTMD 1401
Query: 971 KIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
++ A+ QG D + +PSAR++ G ++GTG F L
Sbjct: 1402 FLKTATFQGVHDDMNSPSARLVFGNTIKEGTGSFDL 1437
>gi|340376989|ref|XP_003387013.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Amphimedon
queenslandica]
Length = 1309
Score = 735 bits (1898), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/1129 (39%), Positives = 647/1129 (57%), Gaps = 135/1129 (11%)
Query: 1 MDGWTQNASHF-----LKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTF 55
DG NA HF ++EA +++ +QYLVPKDG+PLSGLIQDHV+SG L+LRD F
Sbjct: 185 FDGGEMNA-HFPQGELARSEAYSIVSTQNQYLVPKDGTPLSGLIQDHVVSGVLLTLRDRF 243
Query: 56 LTRAEYMNLVYQALCILNTEIRTLPPT--IWKPMPLWTGKQVLSTVIINLTP--KDKVII 111
+ +Y NL+ AL + + LPP I KP LWTGKQV+S++++NL P +DK+ +
Sbjct: 244 FDKGDYQNLLMVALPDFTSPFKVLPPATCICKPKELWTGKQVISSLLLNLIPAGQDKLNL 303
Query: 112 RHGELLS----GILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLV 167
+S G K S++Y + + ++ V R G+LLSG+LDK QFG++Q+G V
Sbjct: 304 ISKTKISPKEWGRYCNKSSESSKY-TDNIMTESEVIFREGQLLSGVLDKSQFGASQFGFV 362
Query: 168 HAVWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRL 226
H+ ++ +G LLS L ++FT +L+ GF+LGV DILV+ D++R KII + R
Sbjct: 363 HSCYELYGGTMCNYLLSALGRIFTGFLKLYHGFSLGVEDILVKPMADKERFKIIAEGRDC 422
Query: 227 GTEAACNALGLPLDTDPEIISSQLQEAYASIPQFRAQI-DRQYKSLLDKVTNNINQVCLP 285
G EAA +A + D +++ + + + +I + ++ D K D++ N +N C+P
Sbjct: 423 GLEAAADAFVVKNVKDKDLVIEKYTDVHHTIGRDGLKVLDFFMKKKTDQINNKVNVACIP 482
Query: 286 EGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYE 345
GL +PFP+N+LQ MV++GAKGSTVN MQISCLLGQIELEG+RP +M+SGR+LP+FLPY+
Sbjct: 483 AGLHKPFPSNSLQLMVQAGAKGSTVNCMQISCLLGQIELEGRRPPIMLSGRSLPTFLPYD 542
Query: 346 VSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVH 405
+PR+GGFVDGRF+TG++P EFF H MAGREGL+DTAVKTSRSGYLQRCLVKHLEG+TV+
Sbjct: 543 TTPRSGGFVDGRFLTGVRPPEFFLHAMAGREGLVDTAVKTSRSGYLQRCLVKHLEGITVN 602
Query: 406 YDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPL 465
YD+TVRDSD S++Q LYGEDGLD++K ++L+ Q FLEDN YK L L P
Sbjct: 603 YDLTVRDSDGSVLQFLYGEDGLDISKTRFLSSNQMYFLEDN------YKAFLYRLD--PT 654
Query: 466 SLALLLLLT------------------------FKSSGKPNF-------IFSPH------ 488
S +L T + SG ++ I + +
Sbjct: 655 SAVSVLETTKAAKYQRKVDKWKKKQKQRLATPRIRRSGFLDYCDQHLPEILAKYSDNSHS 714
Query: 489 -RTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYT 547
R + +++ WY RK++ K P S +PD +FGS+ E L + +Y
Sbjct: 715 TRAQAHRSVIDLWYSSSPMLRKEFNDKHDTVYYPTTSVLRPDRYFGSVPEKLTSDIEQYI 774
Query: 548 KGRTDASH---------VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTF 598
+ +KF + +K L ++A PGE VG+LAAQSIGEPSTQMTLNTF
Sbjct: 775 STSPTFKNNGNQQTLLTPEKFRTLSQFKCLRAVAEPGEPVGLLAAQSIGEPSTQMTLNTF 834
Query: 599 HFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITM 658
HFAGRG+MNVTLGIPRLREILM + IKTP+M++P LP +P +++ + K +R+ +
Sbjct: 835 HFAGRGEMNVTLGIPRLREILMTGSPNIKTPAMDVPLLP-LPDAKEQGENIKKYFSRVLL 893
Query: 659 ADVLEKVKIKEWLEISPEP--HMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKEL 716
DVL+ V++ E L+ E H +Y +K F+ Y+D+ V PSKI++ E F+ +L
Sbjct: 894 KDVLDSVEVWESLDRKGEGFYHRSYVIKLTFLDPKYYKDEYIVTPSKILEFVETCFINKL 953
Query: 717 EVAIAKRAAQG----LKNMNIEQSRDQM--EDDVEDDEGEGAEGAGAALGRVDVSSDEER 770
I+K + LK +D + + +DD+ EG G SD E
Sbjct: 954 TAVISKEIKKSKDKLLKTPGTYVDKDSIPQQSSGDDDKDIDNEGMGHDSDDDSDESDVEE 1013
Query: 771 DEEDAVQSHKKVNQEEDNDFEEPEDEERMSER----------EEDDNTSNIGERFKIE-- 818
E+ ++V+ E +D + E E +D+N +I + E
Sbjct: 1014 AEKAIKNKKQQVSYEAADDEDIEAIEGEEEEGKEEEENEKDTRKDNNEESIQLDMEAESM 1073
Query: 819 -----FRDSTNV---FVKDVVNQHNIVHKYSYDKKNHMWCKLL----------------- 853
+ ST++ ++ VV++++ + +Y YD +N WC+
Sbjct: 1074 YEPLPSQKSTSMDSSRIEAVVSKNSHLSEYIYDAENERWCQFTLKFETGNDKIMMSYFIE 1133
Query: 854 -----------------FLPSNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDI 896
FL + +E + LKT+G+N+ + ++ LL++ K Y N+I
Sbjct: 1134 KLSNKVVVWEVPDIKKGFLAESQVPGEEGLYRLKTEGVNMQELWKHSDLLNVRKAYTNNI 1193
Query: 897 HYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLN 956
H +AST+GIEAA II+EV +VF VYGI V+ RHLSL+ADYMT G Y + +R G+ N
Sbjct: 1194 HIIASTFGIEAAAVAIIKEVSSVFNVYGISVNHRHLSLIADYMTFDGDYKSFSRFGMNSN 1253
Query: 957 PSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQ 1005
S Q+M+FE ++ +R A+++G D+LR+PSA ++ G GTG FQ
Sbjct: 1254 SSPFQQMSFETTMKFLRSATVRGDVDTLRSPSACLVTGNVVHGGTGAFQ 1302
>gi|312372078|gb|EFR20121.1| hypothetical protein AND_20631 [Anopheles darlingi]
Length = 1721
Score = 725 bits (1872), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/809 (49%), Positives = 523/809 (64%), Gaps = 68/809 (8%)
Query: 2 DGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLT 57
DG NA + ++EA L+ V QYLVPKDG+PL GLIQDH++S KL +R F
Sbjct: 560 DGDEMNAHLPQNEVARSEAYELVAVPHQYLVPKDGTPLGGLIQDHIVSAVKLFIRGKFFN 619
Query: 58 RAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPK----------D 107
R +Y LV+QAL +I LPP+I KP+ LW+GKQ++ST++ NLTPK
Sbjct: 620 REDYQQLVFQALSNQKGDIELLPPSILKPVRLWSGKQIISTIVKNLTPKGLPHINMIGKS 679
Query: 108 KVIIRHGELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLV 167
K+ +H +L Q G T + ++ V IR GELL GILDK FG+T YGL+
Sbjct: 680 KLNEKHWRVLPS--RPWQHGGTPLE-GSELSESEVCIRQGELLCGILDKNHFGATPYGLI 736
Query: 168 HAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRL- 226
H +++ +G + +LLS L++LFT YLQ GFTLGV DILV+ + +RKR+KII + R +
Sbjct: 737 HCMYELYGGVCSSALLSSLSRLFTYYLQWEGFTLGVHDILVQAKANRKRSKIIAECRAVA 796
Query: 227 GTEAACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPE 286
G EA AL LP DT PE ++ +L EAYA P+FR+ +DR+YKS+LDK TN IN VCLP+
Sbjct: 797 GVEATAAALELPADTPPEELAKRLTEAYAKNPKFRSILDRKYKSVLDKYTNQINNVCLPQ 856
Query: 287 GLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEV 346
GLI FPANNLQ MV+SGAKGSTVNTMQISCLLGQIELEGKRP +M+SGR+LPSF YE
Sbjct: 857 GLISKFPANNLQLMVQSGAKGSTVNTMQISCLLGQIELEGKRPPLMMSGRSLPSFAYYET 916
Query: 347 SPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHY 406
SP++GGF+DGRFMTGIQPQ+FFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGL+V Y
Sbjct: 917 SPKSGGFIDGRFMTGIQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLSVQY 976
Query: 407 DMTVRDSDLSLIQVLYGEDGLDVTKRQYLTD-KQFSFLEDNIKWICSYKV---ILNLLKK 462
DMTVRDSD S++Q +YGEDGLD+ K Q++ + KQ SFL+ N I ++ + N +
Sbjct: 977 DMTVRDSDGSVVQFMYGEDGLDIAKAQFVGNGKQLSFLDLNRDVIVRKELQERLANAEYE 1036
Query: 463 HPLSLAL--------------------------LLLLTF---------KSSGKPNFI-FS 486
PL AL + F K KP+ + S
Sbjct: 1037 DPLHAALKKHMKRMKRWKKVNGGTEAMTQKRRTSAFVAFSAAKTDELRKEMAKPDKLKSS 1096
Query: 487 PHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKY 546
RTK T L ++W + D ++++ K+ + CP PL + ++PDAHFG +SE L + V Y
Sbjct: 1097 SGRTKLTEKLAKRWVKCDPAIKREFVKQTEHCPDPLPAVYRPDAHFGVLSERLEELVHSY 1156
Query: 547 TKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDM 606
+ +D+ + K SL PGE VG+LAAQS+GEPSTQMTLNTFHFAGRGDM
Sbjct: 1157 KRTERPLHDIDELMQI---KGSFSLVAPGEPVGILAAQSVGEPSTQMTLNTFHFAGRGDM 1213
Query: 607 NVTLGIPRLREILMMATKAIKTPSMEIPFLPDMP--KLEKKANRLAKSMTRITMADVLEK 664
NVTLGIPRLREILM+A+ IKTPSMEIPFLP +L+ A +L KS+ R+T+ADVLE
Sbjct: 1214 NVTLGIPRLREILMLASSNIKTPSMEIPFLPHRKPERLKAIAEKLRKSLNRVTVADVLEN 1273
Query: 665 VKIKEWLEISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRA 724
+ IK L + P M + ++F F+P Y V P +I+ H R+F + I R
Sbjct: 1274 IHIKSRLVLRPTRGMKHMIRFNFLPPDAYSHDYRVTPQEILRHMSRRFFTAMFREI--RK 1331
Query: 725 AQGLKNMNIEQ---SRDQMEDDVEDDEGE 750
A+ KN+ IE+ ++ + ++ DDE E
Sbjct: 1332 AEMSKNVLIEEEVVTKTRSKNTGGDDENE 1360
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 112/304 (36%), Positives = 170/304 (55%), Gaps = 54/304 (17%)
Query: 745 EDDEGEGAE-----GAGAALGRVDVSSDEERDEEDAVQSHKKVN-----QEEDNDFEEPE 794
+DDEG GA+ GAG + D D +E++ +Q+ K + + +D EE
Sbjct: 1419 DDDEGIGADNEDGNGAGGGVNSDDSDLDASDNEQEGMQASAKSAAPSTLEADIDDVEEGA 1478
Query: 795 D---EERMSEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCK 851
D ++ SE +E E R + V + Y+YD+K + WC+
Sbjct: 1479 DLFGPQQPSEVKERQGMMTEAEEVAHARRSNEQVTM------------YTYDQKEYRWCQ 1526
Query: 852 L-LFLP--------SNLFEEKESKHL--------------------LKTDGINVNFISQY 882
L L +P S +F E +K + LKTDGIN++ ++++
Sbjct: 1527 LELHMPLKLKEVDFSKIFHEIAAKSVVWEVPRIKRAITYMQNDRLYLKTDGINISAMAKH 1586
Query: 883 RHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHS 942
LLDLN+LY+NDIH MA+ YGIEAA+RVI++E++NVF+VYGI +DPRHL L+ADYMT
Sbjct: 1587 AKLLDLNRLYMNDIHGMAARYGIEAASRVIVKEIQNVFSVYGITIDPRHLLLIADYMTSD 1646
Query: 943 GTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTG 1002
G + AM+R G+ + S +Q+M+FE L+ ++ A ++G D L +PS+R+M+GQ C+ GTG
Sbjct: 1647 GKFQAMSRTGMANSASPLQQMSFESSLKFLKSAMLKGMCDRLESPSSRLMVGQPCKSGTG 1706
Query: 1003 LFQL 1006
F L
Sbjct: 1707 AFTL 1710
>gi|196008945|ref|XP_002114338.1| hypothetical protein TRIADDRAFT_27970 [Trichoplax adhaerens]
gi|190583357|gb|EDV23428.1| hypothetical protein TRIADDRAFT_27970 [Trichoplax adhaerens]
Length = 1724
Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/1134 (38%), Positives = 615/1134 (54%), Gaps = 158/1134 (13%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S +AEA + + QYL+PKDG P+SGLIQDH++S KL +R T+ +Y L+Y A
Sbjct: 606 SELSRAEAYTIASTKYQYLLPKDGKPISGLIQDHMVSSVKLMIRGRMFTKEQYFQLIYFA 665
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRH-GELLSGILDKKQFG 127
L + I LPP I KP LW+GKQVLST+++N+ PK+ + G+ S I DK
Sbjct: 666 LTDKDGPIHLLPPCIIKPRQLWSGKQVLSTLLLNILPKNSTPLNMLGK--SKIADKSWVN 723
Query: 128 ------STQYGLVH--AVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHA 179
S Y ++ + ++ V IR GELL GILDK FG+T YGLVH ++ +G + +
Sbjct: 724 TRMKKKSRYYKPLYDEILSESQVVIRQGELLCGILDKAHFGATSYGLVHCCYELYGGDTS 783
Query: 180 ISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPL 239
+ LS ++KL T +LQ GFTLG+ DILVRQ+ D R + I G + A A +
Sbjct: 784 TTFLSSVSKLLTKFLQMNGFTLGIEDILVRQDADNLRQQFIKDCASSGNKIAKEAFNV-- 841
Query: 240 DTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQF 299
++ + +A+ A+++ K D TN IN+ C GL++ FP NNLQ
Sbjct: 842 -NSKSLVQEKFCQAHLKNKDLLAELESHMKRNTDHFTNEINKACTGAGLLKLFPENNLQL 900
Query: 300 MVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFM 359
MV+SGAKGSTVN MQISCLLGQIELEGKRP +M+SGR+LPSF PY+ SPRAGGFVD RF+
Sbjct: 901 MVQSGAKGSTVNCMQISCLLGQIELEGKRPPLMISGRSLPSFTPYDTSPRAGGFVDNRFL 960
Query: 360 TGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQ 419
+G++PQE+FFHCMAGREGL+DTAVKTSRSGYLQRCLVKHLEGL V YD+TVRD+D S+IQ
Sbjct: 961 SGLRPQEYFFHCMAGREGLVDTAVKTSRSGYLQRCLVKHLEGLVVQYDLTVRDTDGSVIQ 1020
Query: 420 VLYGEDGLDVTKRQYLTDKQFSFLEDNI---------------------KWICSYKVILN 458
YGED +DVT Q+L+ + F+ +N K + SYK +
Sbjct: 1021 FQYGEDSVDVTNTQFLSTVHYPFMANNYISMLDKLDFKAVMESDFINRKKAVRSYKKLAK 1080
Query: 459 LLKKHPLSLALL--LLLTFKSSGKPNFIFSPHRTKFTMD------------------LLE 498
+K L + L L + +S F FS K D ++
Sbjct: 1081 WFQKRNLKIDDLPPLRQLYSTSAVQEFEFSNLGQKIRKDYKSNVLDKTTGLSTATTAIIN 1140
Query: 499 QWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISEN----LADSVVKYTKG----- 549
W +LD ++K+ K CP P+ +PD +FGS+SE L + +Y G
Sbjct: 1141 GWKKLDSSIKEKFCKSGSTCPDPVNCRLKPDRYFGSVSEKQWKELELFLAQYENGIPTSR 1200
Query: 550 RTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVT 609
D D F M+ K + +L PG VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVT
Sbjct: 1201 NNDYVPCDNFRKMMHLKFMRALVEPGCPVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVT 1260
Query: 610 LGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKE 669
LGIPRLREILM+ + IKTPSM I L +K A L K TR+T++ V
Sbjct: 1261 LGIPRLREILMVGSPNIKTPSM-IVILKKNKDTDKNAKYLKKHFTRVTLSQVNSNFLFML 1319
Query: 670 WLE------ISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKII----DHFERKFLKELEVA 719
L ++ E Y ++ +P Y+D+ ++KP+++I D F F+K +E
Sbjct: 1320 LLYHVYVYVLTCEFQRYYSVRMNLLPYKDYKDEFAIKPARVIKFIEDVFILHFIKSVEKV 1379
Query: 720 IAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSH 779
I + + N+N + R + DV DD E ++ + + DEE +D + ++
Sbjct: 1380 IKASKSNKVINLN-KLGRFRKFRDVHDDAKEKSK---------ESTQDEETTYDDQLTNN 1429
Query: 780 KKVNQEEDNDFEE---------------------PEDEERMSEREEDDN----------- 807
+ N ++ + E S + ++ N
Sbjct: 1430 PNQLNHKSNKVKKLSYDDNTDDETEDSSSQSDDNDDGSELYSNQSQNSNEFSMHIFDCEI 1489
Query: 808 TSNIGERFKIEFRDSTNVF-----VKDVVNQHNIVHKYSYDKKNHMW-----------CK 851
T N G F +N F +K V H + S+D +N W CK
Sbjct: 1490 TRNFG------FCKRSNKFFHFFNLKTVSAIHQRIVANSHDVQNKRWYEFTFTVRLNTCK 1543
Query: 852 LLFLP-------------------SNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLY 892
++ P + ++K L TDG+N+ Q+ +++D+NKLY
Sbjct: 1544 IILEPIIEQLAKQATIREVQSVKKCYINKDKNETVTLTTDGVNLQDTWQFANIIDVNKLY 1603
Query: 893 VNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNG 952
N+IH MASTYGIEAA R II+E++NVF VYGI+V+ RHLSL+ADYMT+ G+Y +NR G
Sbjct: 1604 TNEIHAMASTYGIEAAYRAIIKEIENVFRVYGIDVNYRHLSLIADYMTYEGSYRPLNRLG 1663
Query: 953 IRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+ S QKM+FE + +R+A+ G D L++PS+R++ G+ GTG F L
Sbjct: 1664 MASCSSPFQKMSFETTVHFLREATAHGEIDVLKSPSSRLVTGRVVNGGTGCFDL 1717
>gi|391344300|ref|XP_003746439.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Metaseiulus
occidentalis]
Length = 1726
Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 450/1130 (39%), Positives = 629/1130 (55%), Gaps = 138/1130 (12%)
Query: 2 DGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLT 57
DG NA S ++EA + +V+ QYLVPKDG+PLSGLIQDHVI G L++RD F
Sbjct: 596 DGDEMNAHLPQSELARSEAYNIASVNYQYLVPKDGTPLSGLIQDHVIGGTILTMRDKFFN 655
Query: 58 RAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELL 117
R +Y LV+ AL + +I TLPP I KP+ LWTGKQ++ST+I+N P
Sbjct: 656 REDYQKLVFGALTFIERKILTLPPAIRKPVALWTGKQIVSTIILNCVPPAVPP------- 708
Query: 118 SGILDKKQFGSTQYGLVHAVWDTH-----VTIRHGELLSGILDKKQFGSTQYGLVHAVWD 172
+ K + + + + D H V IR GELL G+LDK +G +QYGLVH ++
Sbjct: 709 PTVYGKTKVPAKAWPRTDTILDPHLAEDLVVIRDGELLCGVLDKAHYGPSQYGLVHVCYE 768
Query: 173 THGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGTEAA 231
+G E + +LS A+L+T YLQ GFTLG++DILV + +RKR KI+ + R G + A
Sbjct: 769 LYGGETSSLVLSGFARLYTHYLQMYHGFTLGIKDILVTPDANRKRRKIMRRRRLGGDKVA 828
Query: 232 CNALGLPLDT-DPEIISSQLQEAYASIP-QFRAQIDRQYKSLLDKVTNNINQVCLPEGLI 289
AL D PE + S+L+ + + +F D K L D + N+IN+ C+P+GL
Sbjct: 829 LEALNAENDELSPEEVKSKLRAGHLNREDKFLKVWDASMKKLTDSINNDINKACMPDGLQ 888
Query: 290 EPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPR 349
FP NNLQ MV+SGAKG VN MQISCLLGQIELEG+R + +GR+LPSF PY+ SPR
Sbjct: 889 VGFPQNNLQLMVQSGAKGGMVNCMQISCLLGQIELEGRRVPLNAAGRSLPSFKPYDTSPR 948
Query: 350 AGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMT 409
AGGF+DGRF+TGI+PQEFFFHCMAGREGL+DTAVKTSRSGYLQRCL+KHLEGL V+YD T
Sbjct: 949 AGGFIDGRFLTGIRPQEFFFHCMAGREGLVDTAVKTSRSGYLQRCLIKHLEGLMVNYDQT 1008
Query: 410 VRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFL---------EDNIKWICSY------- 453
VRDSD S+IQ YGEDGLD+ K Q L KQF L D+I+ S
Sbjct: 1009 VRDSDGSVIQFQYGEDGLDILKLQMLKRKQFPALIRNAPALIDTDHIEQTRSVTDNEALQ 1068
Query: 454 -----------KVILNLLKKHPLSL-ALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWY 501
K+ ++ P ++ ++ FK++ P+ + + + L+ +Y
Sbjct: 1069 KITHKVARYQRKIAKGRRRESPFTVFSIQNEAEFKAT-YPDNDPTTGQPMYRSHLIRAYY 1127
Query: 502 QLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKY--------------T 547
L++K RK+ RK+ A PL S +PD H GS+ E L D + Y
Sbjct: 1128 ALNEKDRKQLRKQVVAPMDPLTSILRPDLHLGSLGEKLHDDIEDYIAVNPDRLLLTDNFN 1187
Query: 548 KGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMN 607
K F DM++ +L GE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MN
Sbjct: 1188 KHEVKVLEPSDFRDMLYSIYQKALTCAGEPVGLLAAQSIGEPSTQMTLNTFHFAGRGEMN 1247
Query: 608 VTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKI 667
VTLGIPRLREILM+A+K I TPSM + L +E +A +L ++++++ VLE V +
Sbjct: 1248 VTLGIPRLREILMVASKNISTPSMNL-HLKKAASVEPRAEKLRVGISQVSLQQVLESVTV 1306
Query: 668 KEWLEISPEPHMN---YQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKR- 723
E LEIS P N YQ++F F+P Y+ PSKI+ + E KF+ +L A+ K+
Sbjct: 1307 TERLEISV-PGRNFRVYQIRFDFLPFKAYKKSLYTNPSKILRYMETKFVMKLIDALRKKL 1365
Query: 724 ---AAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHK 780
+ + ++ SR DD DD + DE + E ++ +
Sbjct: 1366 VLVKSARMVDVGSRVSRAAANDD--DDREQERVNFNEDDDGDSSGDDEGAEGETNIEFQR 1423
Query: 781 KVNQEEDNDFEEPEDEE----------------------------RMSEREEDDNTSN-- 810
+ ++D D++EPE EE + SE E +++ S
Sbjct: 1424 E-KHDDDKDYDEPEMEEYQKSSDEDEGIDEEEFAPTLEELRPKDPQTSESEANNSRSEHL 1482
Query: 811 IGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFL---------PSNLFE 861
+ + + + +V+N H V Y +D + WC++ F S+L E
Sbjct: 1483 VMRIKNKKLKAQKKLRANNVINYHTWVTGYDFDTEREEWCEVTFQLEMQNSKFDMSSLVE 1542
Query: 862 EKESKHL-------------------------LKTDGINVNFISQYRHLLDLNKLYVNDI 896
E+ L L+T+G+N + +Y ++D+ ++Y NDI
Sbjct: 1543 EEIKNSLLHSVKGISRAFLVKDNDDRSGCGKMLQTEGVNFQEMFKYDDIIDMRRIYSNDI 1602
Query: 897 HYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLN 956
+ ++ +GIEAA R I++EV +VF VYGIEVDPRHLSLVADYMT G Y A NR + N
Sbjct: 1603 YAISQVFGIEAATRAIVKEVTSVFGVYGIEVDPRHLSLVADYMTFDGQYRAFNRIHMGNN 1662
Query: 957 PSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
S +Q+M+FE ++ A++ G D L +PS+ +++GQ GTG+ ++
Sbjct: 1663 ASPLQQMSFETTCSFMKNAALLGFSDRLTSPSSSLVMGQLVGVGTGICEM 1712
>gi|432102463|gb|ELK30040.1| DNA-directed RNA polymerase I subunit RPA1 [Myotis davidii]
Length = 1657
Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/1079 (39%), Positives = 602/1079 (55%), Gaps = 149/1079 (13%)
Query: 1 MDGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA S +AEA L QYLVPKDG PL+GLIQDH+I+GA +++R F
Sbjct: 583 FDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMIAGANMTIRGCFF 642
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL 116
TR +YM L+Y+ L ++ P I KP PLWTGKQV+ST++IN+ P++ H L
Sbjct: 643 TREQYMELIYRGLTDKVGHVKLFAPAILKPFPLWTGKQVVSTLLINIIPEE-----HSPL 697
Query: 117 -LSGILDKKQFGSTQY---------GL-VHAVWDTHVTIRHGELLSGILDKKQFGSTQYG 165
LSG K + G + G ++ ++ V IR GELL G+LDK +GS+ YG
Sbjct: 698 NLSG---KAKIGGKAWVKESPRPVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYG 754
Query: 166 LVHAVWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKAR 224
LVH ++ +G E + +L+CLA+LFT YLQ GFTLGV DILV+ + D +R +II+++
Sbjct: 755 LVHCCYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPQADVRRHRIIDEST 814
Query: 225 RLGTEAACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVC 283
G A +AL LP + + + Q+A+ Q ID ++K ++ +N IN+ C
Sbjct: 815 HCGPRAVRSALNLPETAPCDEVRGRWQDAHLGQDQRDFNMIDLKFKEEVNHYSNEINKAC 874
Query: 284 LPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLP 343
+P GL FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F P
Sbjct: 875 MPFGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEP 934
Query: 344 YEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLT 403
YE +PRAGGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL
Sbjct: 935 YEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLV 994
Query: 404 VHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICS----------- 452
V YD+TVRDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I
Sbjct: 995 VQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSKHLHEVLSRA 1054
Query: 453 --------YKVILNLLKKHPLSLALL-LLLTFKSSGKPNF-------IFSPHRTKFTMDL 496
++ I KHP L L++ + + P R+ T +
Sbjct: 1055 DPKKALRHFRAIKKWQSKHPGPLQRTGAFLSYSQKVQADARAADLQGTSQPGRSPGTCQV 1114
Query: 497 LEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASH- 555
L W +LD+++R+KY+KK CP P +S ++PD +F S+SE + Y++ +
Sbjct: 1115 LRMWGELDEQSRRKYQKKAAPCPDPTLSVWRPDIYFASVSETFEKKMDDYSREWASQAEK 1174
Query: 556 --------VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMN 607
+D+ ++ K SL +PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MN
Sbjct: 1175 SFEKSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMN 1234
Query: 608 VTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKI 667
VTLGIPRLREILM+A+ IKTP M +P L + K K+ L + +TR+ + +VL+KV +
Sbjct: 1235 VTLGIPRLREILMVASANIKTPMMSVPVL-NTKKALKRVKSLKRQLTRVCLGEVLQKVDV 1293
Query: 668 KE--WLEISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKR-- 723
+E W+ Y+++F F+P Y + ++P+ I+ E +F K L +I K+
Sbjct: 1294 QESFWMGEKQNKFRVYELRFQFLPHAYYEQEKCLRPADILHFMETRFFKILMESIRKKNN 1353
Query: 724 AAQGLKNMNIEQSRDQMEDDVEDDEGEGAE----------------GAGAALGRVDVSSD 767
A +++N +R + D+ D+ GE A A G D S
Sbjct: 1354 KASAFRSVN---TRRATQRDL-DNAGESGRPPGEQEGEEGEEEHIVDAEAEEGDADASDV 1409
Query: 768 EERDEE-------------------DAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNT 808
+ R+++ + V V+ E + +E +DEE S EE+
Sbjct: 1410 KRREKQEEEVDYESEDEEEGEQSDDEDVPEEGNVSGEGASAAQE-QDEEGGSGPEENSAP 1468
Query: 809 SNIGERFK-------IEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC---------KL 852
+ + + + ++ V+ V H + Y YD + +WC K+
Sbjct: 1469 APPSRQPRKPSSSQEPQEAEAVERRVQAVRESHPFIEDYQYDAEESLWCQVTVKLPLMKI 1528
Query: 853 LFLPSNLF-------------------------EEKESKHLLKTDGINVNFISQYRHLLD 887
F S+L + E + +L T+GIN+ + +Y +LD
Sbjct: 1529 NFDMSSLVVSLAHSAVIYATKGITRCLLNETTNSQNEKELVLNTEGINLPELFKYAEVLD 1588
Query: 888 LNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLS--LVADYMTHSGT 944
L +LY NDIH MA+TYGIEAA RVI +E+K+VFAVYG + R S LV + GT
Sbjct: 1589 LRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGSHDELRSPSACLVVGKVVKGGT 1647
>gi|354499819|ref|XP_003512002.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like
[Cricetulus griseus]
Length = 1048
Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/1037 (40%), Positives = 597/1037 (57%), Gaps = 138/1037 (13%)
Query: 95 VLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQY---------GL-VHAVWDTHVTI 144
V+ST++IN+ P+D + LSG K + GS + G ++ ++ V I
Sbjct: 24 VVSTLLINIIPEDYSPLN----LSG---KAKIGSKAWVKETPRPIPGFDPDSMCESQVII 76
Query: 145 RHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGV 203
R GELL G+LDK +GS+ YGLVH ++ +G E + +L+CLA+LFT YLQ GFTLGV
Sbjct: 77 RKGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGRVLTCLARLFTAYLQLYRGFTLGV 136
Query: 204 RDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQEAYASIPQFR-A 262
DILV+ + D KR +II ++ + G A AL LP + I + Q+A+ Q
Sbjct: 137 EDILVKPDADVKRQRIIEESTQCGPRAVRAALNLPEAASCDEIQGKWQDAHLGKDQRDFN 196
Query: 263 QIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQI 322
ID ++K ++ +N IN+ C+P GL FP NNLQ MV+SGAKGSTVNTMQISCLLGQI
Sbjct: 197 MIDMKFKEEVNHYSNEINKACMPFGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQI 256
Query: 323 ELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTA 382
ELEG+RP +M SG++LP F PYE +PRAGGFV GRF+TGI+P EFFFHCMAGREGL+DTA
Sbjct: 257 ELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIRPPEFFFHCMAGREGLVDTA 316
Query: 383 VKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSF 442
VKTSRSGYLQRC++KHLEGL + YD+TVRDSD S++Q LYGEDGLD+ K Q+L KQF F
Sbjct: 317 VKTSRSGYLQRCIIKHLEGLVIQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPF 376
Query: 443 LEDNIKWICS-------------------YKVILNLLKKHPLSLALL---LLLTFKS--- 477
L N + I +K I KH S ALL L+F
Sbjct: 377 LASNYEVIMKSKHLHEVLARADPQKVLRHFKAIKKWHSKH--SNALLRKGAFLSFSQKIQ 434
Query: 478 --------SGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPD 529
+GK SP T +L+ WY+LD+++R KY+K+ CP P +S ++PD
Sbjct: 435 AAVKALNLTGKNQNGRSPE----TQQMLQMWYELDEQSRWKYQKRAAPCPDPSLSVWRPD 490
Query: 530 AHFGSISENLADSVVKYTK---GRTDASH------VDKFYDMIFYKNLLSLANPGENVGV 580
F S+SE + Y++ +T+ S+ +D+ ++ K SL +PGE VG+
Sbjct: 491 IFFASVSETFEKKIDDYSQEWAAQTEKSYKKSELSLDRLRTLLQLKWQRSLCDPGEAVGL 550
Query: 581 LAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMP 640
LAAQSIGEPSTQMTLNTFHFAGRG+MNVTLGIPRLREILM+A+ IKTP M +P +
Sbjct: 551 LAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVF-NTK 609
Query: 641 KLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMN--YQMKFCFIPAHMYRDKTS 698
K K+ L K +TR+ + +VL+KV ++E + + + + Y+++F F+P Y+ +
Sbjct: 610 KALKRVKSLKKQLTRVCLGEVLQKVDVQESFHMGEKQNRSRVYELRFQFLPHAYYQQEKC 669
Query: 699 VKPSKIIDHFERKFLKELEVAIAKR--AAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAG 756
++P I+ E +F K L AI K+ A +++N ++ + DD ED G+
Sbjct: 670 LRPEDILHFMETRFFKLLMEAIKKKNSKASAFRSVNSRRATQKDLDDTEDS-GKSRREEE 728
Query: 757 AALGRVDVSSDEERDEEDAVQSHKKVNQEE------------------------------ 786
D E +E DA S K +++
Sbjct: 729 GDEEEEGNIVDAEAEEGDADASDTKRKEKQEEEVDYESEEEGEEQAEEEEDAQEEGNISG 788
Query: 787 DNDFEEPEDEERMSEREEDDNTSNIGERF-KIEFRDSTNVFVKDVVNQHNIVHKYSYDKK 845
+ + E E E++++ N R K + ++ ++ V H+ + Y YD +
Sbjct: 789 EGAHQAHEPGEEEGSVLEEESSQNPARRHAKSQGAEAVERRIQAVREAHSFIEDYQYDTE 848
Query: 846 NHMWCKL-LFLP--------SNLF-------------------------EEKESKHLLKT 871
+WC++ L LP S+L + E + +L T
Sbjct: 849 ESLWCQVTLKLPLMKIHFDMSSLIVSLAHNAIVYTTKGITRCLLNETTNSKNEKELVLST 908
Query: 872 DGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRH 931
+GIN+ + +Y +LDL +LY NDIH MA+TYGIEAA RVI +E+K+VFAVYGI VDPRH
Sbjct: 909 EGINLPEMFKYSEVLDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRH 968
Query: 932 LSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARV 991
LSLVADYM G Y +NR GI+ + S +Q+MTFE + ++QA+M G D L++PSA +
Sbjct: 969 LSLVADYMCFEGVYKPLNRFGIQSSSSPLQQMTFETSFQFLKQATMMGSHDELKSPSACL 1028
Query: 992 MLGQECRQGTGLFQLRN 1008
++G+ + GTGLF+L+
Sbjct: 1029 VVGKVVKGGTGLFELKQ 1045
>gi|195025043|ref|XP_001985989.1| GH20789 [Drosophila grimshawi]
gi|193901989|gb|EDW00856.1| GH20789 [Drosophila grimshawi]
Length = 903
Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/923 (43%), Positives = 558/923 (60%), Gaps = 111/923 (12%)
Query: 170 VWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTE 229
+++ +G + + LL+ K+FT +LQ GFTLGV+DILV DRKR II++ R G
Sbjct: 1 MYELYGGDVSTRLLTAFTKVFTFFLQLEGFTLGVQDILVSDVADRKRRNIIDECRDAGNS 60
Query: 230 AACNALGLPLDTDP-EIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGL 288
A AL L D P ++++ Q++ AY +FR +DR+YKSLLD TN+IN+ CLP GL
Sbjct: 61 AVAAALELD-DVPPHDVLAEQMEAAYVKDSKFRVLLDRKYKSLLDGYTNDINKTCLPGGL 119
Query: 289 IEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSP 348
I FP+NNLQ MV SGAKGS VNTMQISCLLGQIELEGKRP +M+SG++LPSF +E SP
Sbjct: 120 ISKFPSNNLQLMVLSGAKGSMVNTMQISCLLGQIELEGKRPPLMISGKSLPSFTSFETSP 179
Query: 349 RAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDM 408
++GGF+DGRFMTGIQPQ+FFFHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEGL+VHYD+
Sbjct: 180 KSGGFIDGRFMTGIQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSVHYDL 239
Query: 409 TVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFS-FLEDNIKWI-------------CSYK 454
TVRDSD S++Q LYGEDGLD+ K ++ K + FL N+K + C K
Sbjct: 240 TVRDSDNSVVQFLYGEDGLDILKSKFFNGKFCADFLAQNVKAVLRPSQLQLMKDEECLAK 299
Query: 455 V------ILNLLKKHPLSLALLL------LLTFKSSGKPNFIFSPH-RTKFTMDLLEQWY 501
V I + KK P L L +PN + + R +F L++ W
Sbjct: 300 VKRHEKHIRSWQKKQPNKLRAAFTHFSEELRNEVEVKRPNEVNAKTGRRRFDEGLIKLWK 359
Query: 502 QLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYD 561
+ D + + YRKK+ CP P ++ ++ D ++G++SE + +Y + S D
Sbjct: 360 KADAEDKALYRKKYARCPDPTVAVYKQDNYYGAVSERTRQLIDEY--ALKNPSQKKIIAD 417
Query: 562 MIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMM 621
++ K++ +LA+PGE VG++AAQSIGEPSTQMTLNTFHFAGRG+MNVTLGIPRLREILM+
Sbjct: 418 IMHMKSIKALASPGEPVGLIAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILML 477
Query: 622 ATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNY 681
A+ IKTPSM+IP P + A +L S+ +T+A +LE V I L + PE Y
Sbjct: 478 ASSNIKTPSMDIPIKPGQ---QHNAEKLRISLNCVTLASLLESVHISTSLTLEPERAYVY 534
Query: 682 QMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQME 741
+ F F+P +Y++ SV+P +II + + F K+L AI K + ++ +
Sbjct: 535 DLMFKFLPREIYKEDYSVRPKRIIKYMHQTFFKQLIRAIVK----------VSSAKKTSK 584
Query: 742 DDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHK--------------------- 780
V DD+ EG + D +D+E D D + + +
Sbjct: 585 IIVVDDKKEGG-------NKQDEDNDQEIDAADDMATQRVAENEDDSSDEGGDDDATGIK 637
Query: 781 -KVNQEEDNDFEEPEDEERMSEREEDDNTSNIGERFKIEFRDSTNVFVKD------VVNQ 833
K + ++ND+++PED E + + +D++ + + E + N V D + NQ
Sbjct: 638 LKQRKTDENDYDDPEDVEEIIDANDDEDENEEEDADGNEQANEDNAEVDDKSVEKLLSNQ 697
Query: 834 HNIVHKYSYDKKNHMWCKLLFLPSNLFEEKE----------------------------- 864
+V+ Y+YDK++H+WC++ S +++ +
Sbjct: 698 --MVNDYTYDKEHHLWCRVTLNLSVRYQKPDLTSIIRELAAKSIVHQVPHIKRAIIYKGN 755
Query: 865 -SKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
+ LLKTDGIN+ + Q+ +LDLN+LY NDIH +A TYGIEAA +VI++EV NVF VY
Sbjct: 756 GDEQLLKTDGINIGEMFQHNKILDLNRLYSNDIHAIARTYGIEAAAQVIVKEVSNVFKVY 815
Query: 924 GIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDS 983
GI VD RHLSL+ADYMT GT+ ++R G+ + S +Q+M+FE L+ +R A+ GR D
Sbjct: 816 GITVDRRHLSLIADYMTFDGTFQPLSRKGMEHSSSPLQQMSFESSLQFLRNAAGFGRPDQ 875
Query: 984 LRAPSARVMLGQECRQGTGLFQL 1006
L +PS+R+M+G R GTG F+L
Sbjct: 876 LNSPSSRLMVGLPVRNGTGAFEL 898
>gi|344256333|gb|EGW12437.1| DNA-directed RNA polymerase I subunit RPA1 [Cricetulus griseus]
Length = 980
Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/983 (41%), Positives = 573/983 (58%), Gaps = 121/983 (12%)
Query: 139 DTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRV- 197
++ V IR GELL G+LDK +GS+ YGLVH ++ +G E + +L+CLA+LFT YLQ
Sbjct: 3 ESQVIIRKGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGRVLTCLARLFTAYLQLYR 62
Query: 198 GFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQEAYASI 257
GFTLGV DILV+ + D KR +II ++ + G A AL LP + I + Q+A+
Sbjct: 63 GFTLGVEDILVKPDADVKRQRIIEESTQCGPRAVRAALNLPEAASCDEIQGKWQDAHLGK 122
Query: 258 PQFR-AQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQIS 316
Q ID ++K ++ +N IN+ C+P GL FP NNLQ MV+SGAKGSTVNTMQIS
Sbjct: 123 DQRDFNMIDMKFKEEVNHYSNEINKACMPFGLHRQFPENNLQMMVQSGAKGSTVNTMQIS 182
Query: 317 CLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGRE 376
CLLGQIELEG+RP +M SG++LP F PYE +PRAGGFV GRF+TGI+P EFFFHCMAGRE
Sbjct: 183 CLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIRPPEFFFHCMAGRE 242
Query: 377 GLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLT 436
GL+DTAVKTSRSGYLQRC++KHLEGL + YD+TVRDSD S++Q LYGEDGLD+ K Q+L
Sbjct: 243 GLVDTAVKTSRSGYLQRCIIKHLEGLVIQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQ 302
Query: 437 DKQFSFLEDNIKWICS-------------------YKVILNLLKKHPLSLALL---LLLT 474
KQF FL N + I +K I KH S ALL L+
Sbjct: 303 PKQFPFLASNYEVIMKSKHLHEVLARADPQKVLRHFKAIKKWHSKH--SNALLRKGAFLS 360
Query: 475 FKS-----------SGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLI 523
F +GK SP T +L+ WY+LD+++R KY+K+ CP P +
Sbjct: 361 FSQKIQAAVKALNLTGKNQNGRSPE----TQQMLQMWYELDEQSRWKYQKRAAPCPDPSL 416
Query: 524 STFQPDAHFGSISENLADSVVKYTK---GRTDASH------VDKFYDMIFYKNLLSLANP 574
S ++PD F S+SE + Y++ +T+ S+ +D+ ++ K SL +P
Sbjct: 417 SVWRPDIFFASVSETFEKKIDDYSQEWAAQTEKSYKKSELSLDRLRTLLQLKWQRSLCDP 476
Query: 575 GENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIP 634
GE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVTLGIPRLREILM+A+ IKTP M +P
Sbjct: 477 GEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVP 536
Query: 635 FLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMN--YQMKFCFIPAHM 692
+ K K+ L K +TR+ + +VL+KV ++E + + + + Y+++F F+P
Sbjct: 537 VF-NTKKALKRVKSLKKQLTRVCLGEVLQKVDVQESFHMGEKQNRSRVYELRFQFLPHAY 595
Query: 693 YRDKTSVKPSKIIDHFERKFLKELEVAIAKR--AAQGLKNMNIEQSRDQMEDDVEDDEGE 750
Y+ + ++P I+ E +F K L AI K+ A +++N ++ + DD ED G+
Sbjct: 596 YQQEKCLRPEDILHFMETRFFKLLMEAIKKKNSKASAFRSVNSRRATQKDLDDTEDS-GK 654
Query: 751 GAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEE------------------------ 786
D E +E DA S K +++
Sbjct: 655 SRREEEGDEEEEGNIVDAEAEEGDADASDTKRKEKQEEEVDYESEEEGEEQAEEEEDAQE 714
Query: 787 ------DNDFEEPEDEERMSEREEDDNTSNIGERF-KIEFRDSTNVFVKDVVNQHNIVHK 839
+ + E E E++++ N R K + ++ ++ V H+ +
Sbjct: 715 EGNISGEGAHQAHEPGEEEGSVLEEESSQNPARRHAKSQGAEAVERRIQAVREAHSFIED 774
Query: 840 YSYDKKNHMWCKL-LFLP--------SNLF-------------------------EEKES 865
Y YD + +WC++ L LP S+L + E
Sbjct: 775 YQYDTEESLWCQVTLKLPLMKIHFDMSSLIVSLAHNAIVYTTKGITRCLLNETTNSKNEK 834
Query: 866 KHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 925
+ +L T+GIN+ + +Y +LDL +LY NDIH MA+TYGIEAA RVI +E+K+VFAVYGI
Sbjct: 835 ELVLSTEGINLPEMFKYSEVLDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGI 894
Query: 926 EVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLR 985
VDPRHLSLVADYM G Y +NR GI+ + S +Q+MTFE + ++QA+M G D L+
Sbjct: 895 AVDPRHLSLVADYMCFEGVYKPLNRFGIQSSSSPLQQMTFETSFQFLKQATMMGSHDELK 954
Query: 986 APSARVMLGQECRQGTGLFQLRN 1008
+PSA +++G+ + GTGLF+L+
Sbjct: 955 SPSACLVVGKVVKGGTGLFELKQ 977
>gi|195334386|ref|XP_002033864.1| GM20204 [Drosophila sechellia]
gi|194125834|gb|EDW47877.1| GM20204 [Drosophila sechellia]
Length = 1585
Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/1080 (39%), Positives = 608/1080 (56%), Gaps = 139/1080 (12%)
Query: 1 MDGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA S +AEA L+NV+S YLVPKDG+PL GLIQDHVISG KLS+R F
Sbjct: 566 FDGDEMNAHYPQSEVARAEAYNLVNVASNYLVPKDGTPLGGLIQDHVISGVKLSIRGRFF 625
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL 116
R +Y LV+Q L L +I+ LPPTI KP LW+GKQ+LST+IIN+ P+ I + +
Sbjct: 626 NREDYQQLVFQGLSQLKKDIKLLPPTILKPAVLWSGKQILSTIIINIIPEGYERI-NLDS 684
Query: 117 LSGILDKKQ---------FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLV 167
+ I K G+ G + + ++ V IR+GELL G+LDK+Q+G+T YGL+
Sbjct: 685 FAKIAGKNWNVSRPRPAICGTNPEG--NELSESQVQIRNGELLVGVLDKQQYGATTYGLI 742
Query: 168 HAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLG 227
H +++ +G + + LL+ K+FT +LQ GFTLGV+DILV DRKR KII + R +G
Sbjct: 743 HCMYELYGGDVSTLLLTAFTKVFTFFLQLEGFTLGVKDILVTDVADRKRRKIIRECRNVG 802
Query: 228 TEAACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEG 287
A AL L + + + +++ AY +FR +DR+YKS+LD TN+IN CLP G
Sbjct: 803 NSAVAAALELEDEPPHDELVEKMEAAYVKDSKFRVLLDRKYKSVLDSYTNDINSTCLPRG 862
Query: 288 LIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVS 347
LI FP+NNLQ MV SGAKGS VNTMQISCLLGQIELEGKRP +M+SG++LPSF +E S
Sbjct: 863 LITKFPSNNLQLMVLSGAKGSMVNTMQISCLLGQIELEGKRPPLMISGKSLPSFTSFETS 922
Query: 348 PRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYD 407
P++GGF+DGRFMTGIQPQ+FFFHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEGL+VHYD
Sbjct: 923 PKSGGFIDGRFMTGIQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSVHYD 982
Query: 408 MTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFS-FLEDNIKWICS-------------- 452
+TVRDSD S++Q LYGEDGLD+ K ++ DK + FL N I
Sbjct: 983 LTVRDSDNSVVQFLYGEDGLDILKSKFFNDKFCADFLTQNATAILRPTHLQLMKDEEQLA 1042
Query: 453 -----YKVILNLLKKHPLSLALLL------LLTFKSSGKPNFIFS-PHRTKFTMDLLEQW 500
K I + KK P L L +PN I S R +F LL+ W
Sbjct: 1043 KVQRHEKHIRSWQKKKPAKLRAAFTHFSEELREEVEVKRPNEINSKTGRRRFDEGLLKLW 1102
Query: 501 YQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFY 560
+ D + + YRKK+ CP P ++ ++ D ++GS+SE + + Y K + +
Sbjct: 1103 KKADAEDKALYRKKYARCPDPAVAVYKQDLYYGSVSERTSKLITDYAKRKPALK--ETIA 1160
Query: 561 DMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILM 620
D++ K + SLA PGE VG +
Sbjct: 1161 DIMRVKTIKSLAAPGEPVG----------------------------------------L 1180
Query: 621 MATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMN 680
+A ++I PS + MT T V + L + PE
Sbjct: 1181 IAAQSIGEPSTQ--------------------MTLNTFHFAGRDVNVSTGLTLDPERSYE 1220
Query: 681 YQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAK--RAAQGLKNMNIEQSRD 738
Y M+F F+P +Y++ V+P II + + F K+L AI K A++ K + I+ +D
Sbjct: 1221 YDMRFQFLPREVYKEDYGVRPKHIIKYMHQTFFKQLIRAILKVSNASKTTKIVVIDDKKD 1280
Query: 739 --QMEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDE 796
+ ED+ D+ E G A +++ D +K ++++ +D ++ E+
Sbjct: 1281 AEKDEDNDLDNADEVGRSKGKANDDDSSDDNDDDDATGVKLKQRKTDEKDYDDPDDVEEL 1340
Query: 797 ERMSEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLP 856
++ +++ + E+ + + + + + +++V YSYDK+NH+WC++
Sbjct: 1341 HDANDDDDEAEDEDDEEKGQDGNDNDGDDKAVERLLSNDMVKGYSYDKENHLWCQVKLNL 1400
Query: 857 SN------------------------------LFEEKESKHLLKTDGINVNFISQYRHLL 886
S +++ + + LLKTDGIN+ + Q+ +L
Sbjct: 1401 SVRYQKPDLTSIIRELAGKSVVHQVQHIKRAIIYKGTDDEQLLKTDGINIGEMFQHNKIL 1460
Query: 887 DLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYV 946
DLN+LY NDIH +A TYGIEAA++VI++EV NVF VYGI VD RHLSL+ADYMT GT+
Sbjct: 1461 DLNRLYSNDIHAIARTYGIEAASQVIVKEVSNVFKVYGITVDRRHLSLIADYMTFDGTFQ 1520
Query: 947 AMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
++R G+ + S +Q+M+FE L+ ++ A+ GR D L +PS+R+M+G R GTG F+L
Sbjct: 1521 PLSRKGMEHSSSPLQQMSFESSLQFLKSAAGFGRSDELSSPSSRLMVGLPVRNGTGAFEL 1580
>gi|195123291|ref|XP_002006141.1| GI20875 [Drosophila mojavensis]
gi|193911209|gb|EDW10076.1| GI20875 [Drosophila mojavensis]
Length = 1649
Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/827 (46%), Positives = 514/827 (62%), Gaps = 81/827 (9%)
Query: 2 DGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLT 57
DG NA S +AEA L+NV+S YLVPKDG+PL GLIQD VISG KLS+R F
Sbjct: 569 DGDEMNAHYPQSEVARAEAYNLVNVASNYLVPKDGTPLGGLIQDQVISGVKLSIRGRFFN 628
Query: 58 RAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTP------------ 105
R +Y LV+Q L L ++ LPP+I KP LW+GKQVLST+IINL P
Sbjct: 629 REDYQQLVFQGLSHLKGNVKLLPPSILKPAILWSGKQVLSTIIINLIPDGYERINLDSFA 688
Query: 106 ----KDKVIIRHGELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGS 161
K+ + R + L G ++Q + ++ V IR+GELL G+LDK+Q+G+
Sbjct: 689 KIGGKNWNVARSRKPLCGSTPQEQ----------ELSESQVQIRNGELLVGVLDKQQYGA 738
Query: 162 TQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIIN 221
T +GL+H +++ +G + + LL+ K+FT +LQ GFTLGV+DILV +E DRKR KII+
Sbjct: 739 TTFGLIHCMYELYGGDVSTRLLTAFTKVFTFFLQLEGFTLGVKDILVTEEADRKRRKIIH 798
Query: 222 KARRLGTEAACNALGLPLDTDP-EIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNIN 280
+ R +G A AL L D P + ++ Q++ AY +FR +DR+YKS+LD TN+IN
Sbjct: 799 ECRDVGNSAVAAALELD-DVPPHDELAEQMEAAYVKDAKFRVLLDRKYKSMLDGYTNDIN 857
Query: 281 QVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPS 340
+ CLP GLI FP+NNLQ MV SGAKGS VNTMQISCLLGQIELEGKRP +M+SG++LPS
Sbjct: 858 KTCLPGGLISKFPSNNLQLMVLSGAKGSMVNTMQISCLLGQIELEGKRPPLMISGKSLPS 917
Query: 341 FLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLE 400
F +E SP++GGF+DGRFMTGIQPQ+FFFHCMAGREGLIDTAVKTSRSGYLQRCL+KHLE
Sbjct: 918 FTSFETSPKSGGFIDGRFMTGIQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLE 977
Query: 401 GLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFS-FLEDNIKWI--------- 450
GL+VHYD+TVRDSD S++Q LYGEDGLD+ K ++ K + FL N K +
Sbjct: 978 GLSVHYDLTVRDSDNSVVQFLYGEDGLDILKAKFFNGKFCADFLTQNAKAVLRPSQLQLM 1037
Query: 451 ----CSYKV------ILNLLKKHPLSLALLL------LLTFKSSGKPNFIFS-PHRTKFT 493
C KV I + KK P L L +PN I + R +F
Sbjct: 1038 KDEECLAKVKRHEKHIKSWQKKKPAKLYAAFTHFSKELRNDVEVDRPNEINTKTGRRRFD 1097
Query: 494 MDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDA 553
LL+ W + D + + YRKK+ CP P ++ ++ D ++GS+SE + Y
Sbjct: 1098 EGLLKLWKKADAEDKALYRKKYARCPDPTVAVYKQDNYYGSVSERTRQLIEDYAAKHPAQ 1157
Query: 554 SHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIP 613
H+ D++ K++ +LA+PGE VG++AAQSIGEPSTQMTLNTFHFAGRG+MNVTLGIP
Sbjct: 1158 KHI--ISDIMHMKSIKALASPGEPVGLIAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIP 1215
Query: 614 RLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEI 673
RLREILM+A+ IKTPSM+IP P + A +L S+ +T+A +LE V + L +
Sbjct: 1216 RLREILMLASSNIKTPSMDIPIKPGQ---QLNAEKLRISLNCVTLASLLESVHVNTSLTL 1272
Query: 674 SPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNI 733
PE Y + F F+P MY++ VKP +II + + F K+L AI K +
Sbjct: 1273 EPERAYVYDLHFKFLPREMYKEDFCVKPKRIIKYMHQTFFKQLIRAILK----------V 1322
Query: 734 EQSRDQMEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHK 780
++ + V D++ EG R D +D+E D D V K
Sbjct: 1323 SNAKKTSKIVVVDEKKEGG-------NRQDEDNDQELDAADDVGPQK 1362
>gi|268532860|ref|XP_002631558.1| Hypothetical protein CBG20734 [Caenorhabditis briggsae]
Length = 1723
Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/1093 (38%), Positives = 604/1093 (55%), Gaps = 126/1093 (11%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
SH + E + NV S +LVPKD +PL GLIQDHV+SG L+LRD FL + ++M+LV +
Sbjct: 636 SHIAQTEVREIANVGSNFLVPKDATPLLGLIQDHVVSGVLLTLRDRFLNKEDFMHLVLAS 695
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGS 128
+ I PPTI P LWTGKQV+ST++ N P+ K +I LD K
Sbjct: 696 FAQYSKRIEIPPPTILYPKRLWTGKQVVSTIVKNCIPEGKPLIN--------LDGKAKTP 747
Query: 129 TQYGLVHA-------VWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAIS 181
+V + ++HV R GELL G+LDK FG+TQ+GL H ++ +G +
Sbjct: 748 LSCWIVPGFKQPDFDMSESHVVFRKGELLVGVLDKAHFGATQFGLAHCAFELYGHRCGVQ 807
Query: 182 LLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDT 241
LLSC ++LFT YLQ GFTLGV DILV +E D KR + ++R +G + A GLP
Sbjct: 808 LLSCFSRLFTTYLQFHGFTLGVADILVVKEADGKRKDAVMESRTIGNQVVKTAFGLPDSA 867
Query: 242 DPEIISSQLQEAYASIPQFRA----QIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNL 297
P I L Y + P+ + +D K + K + I + C+P GL+ FP N L
Sbjct: 868 TPAEIKRTLAATYCN-PRGQGTDVKMLDFGMKQGIAKYNDAITKACVPTGLLRLFPQNAL 926
Query: 298 QFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGR 357
Q M++SGAKGS VN +QIS LGQIELEGKR A+ V+GRTLPSF ++ SPRAGG++D R
Sbjct: 927 QLMIQSGAKGSAVNAIQISGCLGQIELEGKRMAVTVAGRTLPSFRCFDPSPRAGGYIDQR 986
Query: 358 FMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSL 417
F+TG+ PQE FFH MAGREGLIDTAVKTSRSGYLQRC++KHLEG+ VHYD TVRD D S+
Sbjct: 987 FLTGMNPQELFFHTMAGREGLIDTAVKTSRSGYLQRCIIKHLEGIRVHYDSTVRDHDGSV 1046
Query: 418 IQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWIC--------------------SYKVIL 457
IQ YGEDG+D TK +L K FLEDN++ + Y+ I+
Sbjct: 1047 IQFRYGEDGMDTTKVTFLNKKTMPFLEDNLEAVTLASKPEGVNDNEFGINDTEKRYRKIM 1106
Query: 458 NLLKKHPLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKF-K 516
KK P + F + + R +L W++L + R Y K K
Sbjct: 1107 KWKKKAPKTGKKSYFSAFTNFSAEHAGLDKKR------ILAMWFELSLEERAAYEKGIPK 1160
Query: 517 ACPQPLISTFQPDAHFGSISENLADSVVKY-TKGRTDASHVDKFYDMIFYKNLLSLANPG 575
CP+ + + P G++ E + D + + TK + + + + K +F+K + SLA+PG
Sbjct: 1161 KCPEAVDERYNPSCKLGALPEKMLDEIEGFCTKSKEEPNDILK--RTLFWKGMRSLADPG 1218
Query: 576 ENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPF 635
ENVG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVTLGIPRLREILM A+K+I TPS I
Sbjct: 1219 ENVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMTASKSIATPSASIAV 1278
Query: 636 LPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISP-EPHMNYQMKFCFIPAHMYR 694
+ P+ ++ + + + + R+ + +L+ ++E + ++ + Y ++ + A
Sbjct: 1279 IAGTPR--ERIDTIKRELDRVYLKQLLKNFSMEEKITLTQNQSTRRYHLRIEILAAEKRE 1336
Query: 695 DKTS-VKPSKIIDHFERKFLKELEVAIAKR----------AAQGLKNMNIEQSRDQMED- 742
+K SKI+D E++F+ + AI K+ + + ++ NI D
Sbjct: 1337 QGARHLKRSKIMDEIEKRFILRVSHAIKKKYLDITDYQQMSHRTMRQGNIAAGIDTQRGK 1396
Query: 743 ----------DVEDDEGEGAEGAGAALGRV-----DVSSDEERDEEDAVQSHKKVNQEED 787
D D+E EG A AA R+ D ++D E ++E+ V+ ++ ++ D
Sbjct: 1397 SRGLQGPDNGDSSDEEAEGGREADAAEARLHQRHRDEAADYEGEDEERVEVRERDDEPMD 1456
Query: 788 NDFEEPEDEERMSEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNH 847
+D E+ ++EE + + + R + R S N+ Y+YD K++
Sbjct: 1457 SDTEDVKNEEDDENKNDKKDPMVNSSRIQAVQRLSDNI------------SSYTYDVKSN 1504
Query: 848 MWCKLLF-LP----------------------------SNLFEEKESKH-----LLKTDG 873
WC+++F LP E E K+ +L+T G
Sbjct: 1505 KWCEVVFELPLRNKTKMDVSSIVEREVDQFIVHQTPGIERCVETTEQKNGKETIILQTQG 1564
Query: 874 INVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLS 933
+N+ ++ +LD+N +Y ND++ + YG+EA + I E+ NVFAVYGIEV RHLS
Sbjct: 1565 VNLAAFFKHADVLDVNSVYSNDLNLILENYGVEACAKAITTEMNNVFAVYGIEVSKRHLS 1624
Query: 934 LVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVML 993
L ADYMT +G NR + + S +QKMTFE + +R+A +QG ED++ +PSAR+++
Sbjct: 1625 LTADYMTFTGQIQPFNRGAMSSSSSPLQKMTFETTMAFLREALLQGEEDNVNSPSARIVM 1684
Query: 994 GQECRQGTGLFQL 1006
G R GTG F L
Sbjct: 1685 GALPRGGTGSFDL 1697
>gi|195431457|ref|XP_002063757.1| GK15841 [Drosophila willistoni]
gi|194159842|gb|EDW74743.1| GK15841 [Drosophila willistoni]
Length = 1649
Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/784 (47%), Positives = 505/784 (64%), Gaps = 43/784 (5%)
Query: 2 DGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLT 57
DG NA S +AEA L+NV++ YLVPKDG+PL GLIQDHVISG KLS+R F
Sbjct: 566 DGDEMNAHYPQSEVARAEAYNLVNVANNYLVPKDGTPLGGLIQDHVISGVKLSIRGRFFN 625
Query: 58 RAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPK--DKVIIRHGE 115
R +Y LV+Q L L +++ LPP I KP LW+GKQVLST+IINL P +++ +
Sbjct: 626 REDYQQLVFQGLSHLKGDVKLLPPAIMKPAILWSGKQVLSTIIINLIPDGFERINLDSFA 685
Query: 116 LLSG----ILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVW 171
+ G + + + + ++ V IR+GELL G+LDK+Q+G+T +GL+H ++
Sbjct: 686 KIGGKNWQVTSSRPPNGGKPLTEQELGESQVQIRNGELLVGVLDKQQYGATTFGLIHCMY 745
Query: 172 DTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAA 231
+ +G + + LL+ K+FT +LQ GFTLGV+DILV E DRKR KII ++R +G A
Sbjct: 746 ELYGGDVSTRLLTAFTKVFTFFLQLEGFTLGVKDILVTGEADRKRRKIIKESREIGNSAV 805
Query: 232 CNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEP 291
AL L + ++ Q+++AY P+FR +DR+YKSLLD TN+IN+ CLP GLI
Sbjct: 806 AAALELDEVPPHDELAEQMEQAYVKDPKFRVLLDRKYKSLLDGYTNDINKTCLPGGLITK 865
Query: 292 FPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAG 351
FP+NNLQ MV SGAKGS VNTMQISCLLGQIELEGKRP +M+SG++LPSF +E SP++G
Sbjct: 866 FPSNNLQLMVLSGAKGSMVNTMQISCLLGQIELEGKRPPLMISGKSLPSFPSFETSPKSG 925
Query: 352 GFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVR 411
GF+DGRFMTGIQPQ+FFFHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEGL++HYD+TVR
Sbjct: 926 GFIDGRFMTGIQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSIHYDLTVR 985
Query: 412 DSDLSLIQVLYGEDGLDVTKRQYLTDKQFS-FLEDNIKWI-------------CSYKV-- 455
DSD S++Q LYGEDGLD+ K ++ +DK + FL N K I C +V
Sbjct: 986 DSDNSVVQFLYGEDGLDILKSKFFSDKFCADFLTQNAKAILRPSQLAMMRDEECLAQVQR 1045
Query: 456 ----ILNLLKKHPLSLALLL------LLTFKSSGKPNFIFS-PHRTKFTMDLLEQWYQLD 504
I + KK P L L +PN + + R +F LL+ W + D
Sbjct: 1046 HEKHIRSWKKKKPNKLRAAFTHFSEELREEVEVKRPNELNTKTGRRRFDEGLLKLWKKAD 1105
Query: 505 DKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIF 564
+ + YRKK+ CP P ++ ++ D ++GS+SE + Y R D++
Sbjct: 1106 AEDKALYRKKYARCPDPAVAVYKQDLYYGSVSERTRKLIEDY--ARQKPQQKQNIADIMH 1163
Query: 565 YKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATK 624
K++ +LA+PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVTLGIPRLREILM+A+
Sbjct: 1164 IKSIKALASPGEPVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMLASS 1223
Query: 625 AIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMK 684
IKTPSM+IP + +A +L + +T++++LE V I L + PE Y ++
Sbjct: 1224 NIKTPSMDIPIKAGQ---QHQAEKLRIGLNCVTISNLLESVTINTSLNLEPERAYVYDLQ 1280
Query: 685 FCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDV 744
F F+P +Y++ V+P +II + + F K+L AI K + K I + D+ E
Sbjct: 1281 FKFLPREVYKEDYGVRPKRIIKYMHQTFFKQLIRAILK-VSNAKKTSKIIEIDDKKEGGG 1339
Query: 745 EDDE 748
+ DE
Sbjct: 1340 KQDE 1343
>gi|195486012|ref|XP_002091328.1| GE12306 [Drosophila yakuba]
gi|194177429|gb|EDW91040.1| GE12306 [Drosophila yakuba]
Length = 1642
Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/760 (49%), Positives = 490/760 (64%), Gaps = 46/760 (6%)
Query: 2 DGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLT 57
DG NA S +AEA L+NV+S YLVPKDG+PL GLIQDHVISG KLS+R F
Sbjct: 567 DGDEMNAHYPQSEVARAEAYNLVNVASNYLVPKDGTPLGGLIQDHVISGVKLSIRGRFFN 626
Query: 58 RAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPK-------DKVI 110
R +Y LVYQ L +I+ LPPTI KP LW+GKQVLST+IIN+ P+ D
Sbjct: 627 REDYQQLVYQGLSQHKKDIKLLPPTILKPAMLWSGKQVLSTIIINIIPEGYERINLDSFA 686
Query: 111 IRHGELLSGILDKKQF-GSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHA 169
G+ + + G+ G + + ++ V IR+GELL G+LDK+Q+G+T +GL+H
Sbjct: 687 KIAGKNWNASRPRPSICGTNPEG--NELSESQVQIRNGELLVGVLDKQQYGATTFGLIHC 744
Query: 170 VWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTE 229
+++ +G + + LL+ K+FT +LQ GFTLGV+DILV E DRKR KII + R +G
Sbjct: 745 MYELYGGDVSTQLLTAFTKVFTFFLQLEGFTLGVKDILVTGEADRKRRKIIRECRNVGNS 804
Query: 230 AACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLI 289
A AL L + + + +++ AY +FR +DR+YKSLLD TN+IN CLP GLI
Sbjct: 805 AVSAALELEDEPAHDELVEKMEAAYVKDSKFRVLLDRKYKSLLDGYTNDINSTCLPGGLI 864
Query: 290 EPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPR 349
FP+NNLQ MV SGAKGS VNTMQISCLLGQIELEGKRP +M+SG++LPSF +E SP+
Sbjct: 865 TKFPSNNLQLMVLSGAKGSMVNTMQISCLLGQIELEGKRPPLMISGKSLPSFTSFETSPK 924
Query: 350 AGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMT 409
+GGF+DGRFMTGIQPQ+FFFHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEGL+VHYD+T
Sbjct: 925 SGGFIDGRFMTGIQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSVHYDLT 984
Query: 410 VRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFS-FLEDNIKWICS---------------- 452
VRDSD S++Q LYGEDGLD+ K ++ DK + FL N I
Sbjct: 985 VRDSDNSVVQFLYGEDGLDILKSKFFNDKFCADFLTQNATAILRPTHLQLMKDEEQLAKV 1044
Query: 453 ---YKVILNLLKKHPLSLALLL------LLTFKSSGKPNFIFS-PHRTKFTMDLLEQWYQ 502
K I + KK P L L +PN I + R +F LL+ W +
Sbjct: 1045 QRHEKHIRSWQKKKPTKLRAAFTHFSEELREEVEVKRPNEINTKTGRRRFDEGLLKLWKK 1104
Query: 503 LDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDM 562
D + + YRKK+ CP P ++ ++ D ++GS+SE + Y K + + D+
Sbjct: 1105 ADAEDKALYRKKYARCPDPTVAVYKQDLYYGSVSERTRKLINDYAKRKPALK--ETIADI 1162
Query: 563 IFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMA 622
+ K + SLA+PGE VG++AAQSIGEPSTQMTLNTFHFAGRG+MNVTLGIPRLREILM+A
Sbjct: 1163 MRVKTIKSLASPGEPVGLIAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMLA 1222
Query: 623 TKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQ 682
+ IKTPSM+IP P + +A +L ++ +T+A++LE V + L + PE Y
Sbjct: 1223 SSNIKTPSMDIPIKPGH---QHQAEKLRINLNSVTLANLLESVHVSTGLTLEPERAYEYD 1279
Query: 683 MKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAK 722
M+F F+P +Y++ V+P II + + F K+L AI K
Sbjct: 1280 MRFQFLPREVYKEDYGVRPKHIIKYMHQTFFKQLIRAILK 1319
Score = 170 bits (430), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 86/203 (42%), Positives = 127/203 (62%), Gaps = 30/203 (14%)
Query: 834 HNIVHKYSYDKKNHMWCKLLFLPSN------------------------------LFEEK 863
+++V Y+YDK+NH+WC++ S +++
Sbjct: 1435 NDMVKGYTYDKENHLWCQVKLNLSVRYQKPDLTSIIRELAGKSVVHQVQHIKRAIIYKGT 1494
Query: 864 ESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
+ + LLKTDGIN+ + Q+ +LDLN+LY NDIH +A TYGIEAA++VI++EV NVF VY
Sbjct: 1495 DDEQLLKTDGINIGEMFQHNKILDLNRLYSNDIHAIARTYGIEAASQVIVKEVSNVFKVY 1554
Query: 924 GIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDS 983
GI VD RHLSL+ADYMT GT+ ++R G+ + S +Q+M+FE L+ ++ A+ GR D
Sbjct: 1555 GITVDRRHLSLIADYMTFDGTFQPLSRKGMEHSSSPLQQMSFESSLQFLKSAAGFGRADE 1614
Query: 984 LRAPSARVMLGQECRQGTGLFQL 1006
L +PS+R+M+G R GTG F+L
Sbjct: 1615 LSSPSSRLMVGLPVRNGTGAFEL 1637
>gi|198430691|ref|XP_002124424.1| PREDICTED: similar to RNA polymerase I large subunit [Ciona
intestinalis]
Length = 1547
Score = 696 bits (1797), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/1136 (37%), Positives = 620/1136 (54%), Gaps = 143/1136 (12%)
Query: 2 DGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLT 57
DG NA S ++EA LM+ +QYL KDG PLS LIQDH+++G + +R F T
Sbjct: 416 DGDEMNAHFPQSELCRSEAYQLMSTDAQYLSGKDGKPLSCLIQDHMVAGVNMCIRGRFFT 475
Query: 58 RAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELL 117
+ EY L Y+AL L +++ + P + KP LW+GKQ+ ST+ +N+TP +G L
Sbjct: 476 QEEYQQLTYEALMHLPYKVKLIKPALIKPKKLWSGKQIFSTIFLNITP-------NGLPL 528
Query: 118 SGILDKKQFGSTQY----------GLVHAV--WDTHVTIRHGELLSGILDKKQFGSTQYG 165
+ K + G + +H V ++ V IR+GELL GILDK +G+T++G
Sbjct: 529 INLTGKSKIGPKNWQKEPARNAKVAPIHGVDMCESQVIIRNGELLCGILDKAHYGATEHG 588
Query: 166 LVHAVWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKAR 224
LVHA+++ + E + LL+CLA+LFT +LQR GFTLGV DILVR ++ RT +I +
Sbjct: 589 LVHAMYEIYSGEISGRLLTCLARLFTAFLQRYRGFTLGVEDILVRDWANKGRTDVIQDTK 648
Query: 225 RLGTEAACNALGLPLDTDPEIISSQLQEAYASIPQF-------RAQIDRQYKSLLDKVTN 277
G + L + + E I+ L +A+ + A +D K++ + +
Sbjct: 649 DNGMQVVAKTLNVK-KKNEEDITDALWDAHVATKIIVNKTEDKLAAVDHAMKAVCNGAND 707
Query: 278 NINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRT 337
I + C GL++ FP NNLQ MV SGAKG VN MQISCLLGQIELEG+RP +M SGR+
Sbjct: 708 QIAKWCTGGGLLKTFPQNNLQLMVISGAKGGAVNCMQISCLLGQIELEGRRPPLMPSGRS 767
Query: 338 LPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVK 397
PSF+PY+ + RAGGF+ RF+TGI+PQE+F+HCMAGREGL+DTAVKTSRSGYLQRCL+K
Sbjct: 768 APSFMPYDTTIRAGGFISQRFLTGIRPQEYFYHCMAGREGLVDTAVKTSRSGYLQRCLIK 827
Query: 398 HLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVIL 457
HLEGL + YDMTVRDSD ++Q LYGEDG+D+ K YL+ KQ+ F+ DN + I L
Sbjct: 828 HLEGLLLSYDMTVRDSDGGVVQFLYGEDGIDINKTSYLSQKQYDFVVDNYEAIAKQIPSL 887
Query: 458 NLLKKHPL--SLALLLLLTFKSSGKPNFIFSPH----RTKFTMDLLEQ------------ 499
+ P S+A K K + H RT ++ +Q
Sbjct: 888 ERAESAPCVRSIARKWAKYEKMKHKRDKRLRKHPDEKRTSAFLNFSKQSESGSQSVIKQA 947
Query: 500 WYQLDDKARKKYRKKFKA--CPQPLISTFQPDAHFGSISENLADSVVKYTK--------- 548
W ++ + + K+ K P +IS ++PD +FGSIS+N + + KY K
Sbjct: 948 WMGMEVEEKAKFEDKSSKLILPDAVISQYRPDLYFGSISDNFYNEMSKYVKKNPLNLPEE 1007
Query: 549 ---GRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGD 605
++ +++ ++ + SL PGE+VG+LAAQSIGEPSTQMTLNTFHFAGRG+
Sbjct: 1008 EDNKKSRVPSLNRLQTLLKMRYQRSLCQPGESVGLLAAQSIGEPSTQMTLNTFHFAGRGE 1067
Query: 606 MNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKV 665
MNVTLGIPRLREILM+A++ IKTP + +P M +K+A RL K +T++ + VL K
Sbjct: 1068 MNVTLGIPRLREILMVASRHIKTPQITVPV---MDHGQKRAKRLCKELTKVLLTQVLHKF 1124
Query: 666 KIKEWLEISPEPHMNYQMKFCFIPAHMYRDKTSVKP-----SKIIDHFERKFLKELEVAI 720
+ E L + H + + + C I H+ ++ K ++ H E F + L I
Sbjct: 1125 TLDERLVVGGGEHGD-RYRRCVITIHLLPERQFAKDLALTRDTVLRHIESNFFRVLLFQI 1183
Query: 721 AKRAAQG-----LKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRVDVS-------SDE 768
K+ + L + + + + +D+E E L + S D+
Sbjct: 1184 QKQLKKRESEVLLIDQRVAKDTARRAKAGDDNEPEAETFVDDTLEEMPDSRDKNKNTEDD 1243
Query: 769 ERDEE------DAVQSHKKVNQEEDNDFEEPEDE-----ERMSEREEDDNT----SNIGE 813
E DEE DA ++ + ED D+EE +DE + ++DD T + + E
Sbjct: 1244 EIDEEAGFDDGDATAEQQRRKKREDVDYEEQDDELPDENDDTVLVDQDDTTVVDETPMDE 1303
Query: 814 RFKIEFRDSTNVF-----------VKDVVNQHNIVHKYSYDKKNHMWCKL-LFLP----- 856
+ E +T VK++ + + Y +D WCK+ L +P
Sbjct: 1304 QIDTEDEQATEQIDDVTAAIRVRAVKNLGHGSISIEDYEFDTNASGWCKVTLLMPLTSVH 1363
Query: 857 ---SNLFEEKESKHLLK-----------------------TDGINVNFISQYRHLLDLNK 890
+L S ++ T+GIN I + ++L++NK
Sbjct: 1364 VDVVSLVRFAASTSPVRQVAGISRCILVPAQGDTNAVNLVTEGINFYKIFENENILEVNK 1423
Query: 891 LYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNR 950
LY N +H +A YGIEAA RV+++E+ NVFAVYGIEVD RHL+L+ DYM + G Y NR
Sbjct: 1424 LYSNCVHSVAQMYGIEAARRVVVKEIANVFAVYGIEVDQRHLNLIGDYMCYEGVYKPFNR 1483
Query: 951 NGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
I S +Q+M+FE ++ + A++ G +D L++PSAR++ GQ + GTG F L
Sbjct: 1484 MAIESCVSPLQQMSFETTMKFLNSAALYGLQDRLQSPSARIVTGQVVKGGTGNFSL 1539
>gi|194883048|ref|XP_001975616.1| GG22417 [Drosophila erecta]
gi|190658803|gb|EDV56016.1| GG22417 [Drosophila erecta]
Length = 1642
Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/761 (48%), Positives = 491/761 (64%), Gaps = 48/761 (6%)
Query: 2 DGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLT 57
DG NA S +AEA L+NV+S YLVPKDG+PL GLIQDHVISG KLS+R F
Sbjct: 567 DGDEMNAHYPQSEVARAEAYNLVNVASNYLVPKDGTPLGGLIQDHVISGVKLSIRGRFFN 626
Query: 58 RAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELL 117
R +Y LV+Q L I+ LPPTI KP LW+GKQVLST+I N+ P+ I + +
Sbjct: 627 REDYQQLVFQGLSQHKKNIKLLPPTILKPAMLWSGKQVLSTIITNIIPEGYERI-NLDSF 685
Query: 118 SGILDKKQ---------FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVH 168
+ I K G+ G + + ++ V IR+GELL G+LDK+Q+G+T +GL+H
Sbjct: 686 AKIAGKNWNVSRPRPPICGTNPEG--NELSESQVHIRNGELLVGVLDKQQYGATTFGLIH 743
Query: 169 AVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGT 228
+++ +G + + LL+ K+FT +LQ GFTLGV+DILV E DRKR KII + R +G
Sbjct: 744 CMYELYGGDVSTRLLTAFTKVFTFFLQLEGFTLGVKDILVTGEADRKRRKIIRECRNVGN 803
Query: 229 EAACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGL 288
A AL L + + + +++ AY +FR +DR+YKSLLD TN+IN CLP GL
Sbjct: 804 SAVSAALELEDEPPHDELVEKMEAAYVKDSKFRVLLDRKYKSLLDGYTNDINSTCLPRGL 863
Query: 289 IEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSP 348
I FP+NNLQ MV SGAKGS VNTMQISCLLGQIELEGKRP +M+SG++LPSF +E SP
Sbjct: 864 ITKFPSNNLQLMVLSGAKGSMVNTMQISCLLGQIELEGKRPPLMISGKSLPSFTSFETSP 923
Query: 349 RAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDM 408
++GGF+DGRFMTGIQPQ+FFFHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEGL+VHYD+
Sbjct: 924 KSGGFIDGRFMTGIQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSVHYDL 983
Query: 409 TVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFS-FLEDNIKWICS--------------- 452
TVRDSD S++Q LYGEDGLD+ K ++ DK + FL N I
Sbjct: 984 TVRDSDNSVVQFLYGEDGLDILKSKFFNDKFCADFLTQNATAILRPSHLQLMKDEEQLAK 1043
Query: 453 ----YKVILNLLKKHPLSLALLL------LLTFKSSGKPNFIFS-PHRTKFTMDLLEQWY 501
K I + KK P+ L L +PN I + R +F LL+ W
Sbjct: 1044 VQRHEKHIRSWQKKKPVKLRAAFTHFSEELREEVEVKRPNEINTKTGRRRFDEGLLKLWK 1103
Query: 502 QLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYD 561
+ D + + YRKK+ CP P ++ ++ D ++GS+SE + Y K + + + D
Sbjct: 1104 KADAEDKALYRKKYARCPDPTVAVYKQDLYYGSVSERTRKLINDYAKRKPELK--ETIAD 1161
Query: 562 MIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMM 621
++ K + SLA+PGE VG++AAQSIGEPSTQMTLNTFHFAGRG+MNVTLGIPRLREILM+
Sbjct: 1162 IMRVKTIKSLASPGEPVGLIAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILML 1221
Query: 622 ATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNY 681
A+ IKTPSM+IP P + +A +L ++ +T+A++LE V + L + PE Y
Sbjct: 1222 ASSNIKTPSMDIPIKPGQ---QHQAEKLRINLNSVTLANLLESVHVSTGLTLEPERAYEY 1278
Query: 682 QMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAK 722
M+F F+P +Y++ V+P II + + F K+L AI K
Sbjct: 1279 DMRFQFLPREVYKEDYGVRPKHIIKYMHQTFFKQLIRAILK 1319
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 87/203 (42%), Positives = 127/203 (62%), Gaps = 30/203 (14%)
Query: 834 HNIVHKYSYDKKNHMWCKLLFLPSN------------------------------LFEEK 863
+++V YSYDK+NH+WC++ S +++
Sbjct: 1435 NDMVKGYSYDKENHLWCQVKLNLSVRYQKPDLTSIIRELAGKSVVHQVQHIKRAIIYKGS 1494
Query: 864 ESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
+ + LLKTDGIN+ + Q+ +LDLN+LY NDIH +A TYGIEAA++VI++EV NVF VY
Sbjct: 1495 DDEQLLKTDGINIGEMFQHNKILDLNRLYSNDIHAIARTYGIEAASQVIVKEVSNVFKVY 1554
Query: 924 GIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDS 983
GI VD RHLSL+ADYMT GT+ ++R G+ + S +Q+M+FE L+ ++ A+ GR D
Sbjct: 1555 GITVDRRHLSLIADYMTFDGTFQPLSRKGMEHSSSPLQQMSFESSLQFLKSAAGFGRADE 1614
Query: 984 LRAPSARVMLGQECRQGTGLFQL 1006
L +PS+R+M+G R GTG F+L
Sbjct: 1615 LSSPSSRLMVGLPVRNGTGAFEL 1637
>gi|341884897|gb|EGT40832.1| hypothetical protein CAEBREN_30438 [Caenorhabditis brenneri]
Length = 1724
Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/1089 (38%), Positives = 599/1089 (55%), Gaps = 115/1089 (10%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
SH + E + NV S +LVPKD +PL GLIQDHV+SG L+LRD FL + ++M+LV +
Sbjct: 635 SHIAQTEVREIANVGSNFLVPKDATPLLGLIQDHVVSGVLLTLRDRFLNKEDFMHLVLAS 694
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGS 128
+ I PPTI P LWTGKQV+ST++ N P+ K +I LD K
Sbjct: 695 FAQYSKRIEIPPPTILYPKRLWTGKQVVSTIVKNCIPEGKPLIN--------LDGKAKTP 746
Query: 129 TQYGLVHA-------VWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAIS 181
+V + ++HV R GELL G+LDK FG+TQ+GL H ++ +G +
Sbjct: 747 LSCWIVPGFKAPDFDMSESHVVFRQGELLVGVLDKAHFGATQFGLAHCAFELYGHRCGVQ 806
Query: 182 LLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDT 241
LLSC ++LFT YLQ GFTLGV DILV QE D KR + ++R +G + A GL +
Sbjct: 807 LLSCFSRLFTTYLQFHGFTLGVADILVLQEADAKRKDAVMESRTIGDQVVKTAFGLSENA 866
Query: 242 DPEIISSQLQEAYASIPQFRA----QIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNL 297
P I L Y + P+ + +D K + K + I + C+P GL+ FP N L
Sbjct: 867 TPAEIKRTLAATYCN-PRGQGTDVKMLDFGMKQGIAKYNDAITKSCVPTGLLRKFPENAL 925
Query: 298 QFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGR 357
Q M++SGAKGS VN +QIS LGQIELEGKR A+ V+GRTLPSF ++ SPRAGG++D R
Sbjct: 926 QLMIQSGAKGSAVNAIQISGCLGQIELEGKRMAVTVAGRTLPSFRCFDPSPRAGGYIDQR 985
Query: 358 FMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSL 417
F+TG+ PQE FFH MAGREGLIDTAVKTSRSGYLQRC++KHLEG+ VHYD TVRD D S+
Sbjct: 986 FLTGMNPQELFFHTMAGREGLIDTAVKTSRSGYLQRCIIKHLEGIRVHYDSTVRDHDGSV 1045
Query: 418 IQVLYGEDGLDVTKRQYLTDKQFSFLEDNIK---------WICSYKVILNLLKKHPLSLA 468
IQ YGEDG+D TK +L K FLEDN++ + + +K +
Sbjct: 1046 IQFRYGEDGMDTTKATFLNKKTMPFLEDNLEAVTLATKPEGVADADFGVEDTEKRYRKIV 1105
Query: 469 LLLLLTFKSSGKPNFIFSPHRTKFTMD--------LLEQWYQLDDKARKKYRKKF-KACP 519
K P + T F+ + +L W++L + R +Y K CP
Sbjct: 1106 KWKKKAAKKGTTPKKTYFSAFTNFSAEHAGKDKKRILAMWFELSLEERAEYASGIPKKCP 1165
Query: 520 QPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVG 579
+ + + P + G++ E + + + + K D D +F+K + SLA PGENVG
Sbjct: 1166 EAVDERYNPTSKLGALPEKMLEEIEGFCKKDHDEPK-DVLQRTLFWKGMRSLAEPGENVG 1224
Query: 580 VLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDM 639
+LAAQSIGEPSTQMTLNTFHFAGRG+MNVTLGIPRLREILM A+K+I TPS I +
Sbjct: 1225 LLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMTASKSIATPSASIAVIEGT 1284
Query: 640 PKLEKKANRLAKSMTRITMADVLEKVKIKEWLEIS-PEPHMNYQMKFCFIPAHMYRDKTS 698
P+ ++ + + + + R+ + +L+ ++E + ++ + Y ++ + +
Sbjct: 1285 PR--ERIDSIKRELDRVYLKQLLKNFSLEEKITLTQTQSCRRYHLRINILSSEKREQGAR 1342
Query: 699 -VKPSKIIDHFERKFLKELEVAIAKR--------------AAQGLKNMNIE----QSRD- 738
+K SKI++ E++F+ + AI K+ QG IE +SR
Sbjct: 1343 HLKRSKIMEEIEKRFILRVSQAIKKKYYEISDYQQMSHRTMRQGNLAAGIEIGGNKSRGF 1402
Query: 739 QMED--DVEDDEGEGAEGAGAALGRV-DVSSDEERDEEDAVQSHKKVNQEEDNDF--EEP 793
Q D D D+E EG A AA R+ DE D E + +V +E+D++ +
Sbjct: 1403 QGPDNGDSSDEEAEGGREADAAEARLHQRHRDEGADYEGEEEERVEVREEKDDEAMDSDT 1462
Query: 794 EDEERMSEREEDDNTSNI--GERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCK 851
+D ++ E EE++ T + R + R S N + YSYD K++ WC+
Sbjct: 1463 DDLKKPDENEEENETGQMVNSSRVQAVQRLSEN------------IASYSYDVKSNKWCE 1510
Query: 852 LLF-LP----------------------------SNLFEEKESKH-----LLKTDGINVN 877
++F LP E E K+ +L+T G+N+
Sbjct: 1511 VVFELPLRNKTKMDVSSIVEKEVDQFIVHQTQGIERCVETTEQKNGKETIILQTQGVNLA 1570
Query: 878 FISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVAD 937
++ +LD+N +Y ND++ + YG+EA ++ I E+ NVFAVYGIEV RHLSL AD
Sbjct: 1571 AFFKHADVLDVNSVYSNDLNLILENYGVEACSKAITTEMNNVFAVYGIEVSKRHLSLTAD 1630
Query: 938 YMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQEC 997
YMT +G NR + + S +QKMTFE + +R+A + G ED++ +PSAR+++G
Sbjct: 1631 YMTFTGQIQPFNRGAMTSSSSPLQKMTFETTMAFLREALLHGEEDNVNSPSARLVMGALP 1690
Query: 998 RQGTGLFQL 1006
R GTG F L
Sbjct: 1691 RGGTGSFDL 1699
>gi|327275263|ref|XP_003222393.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Anolis
carolinensis]
Length = 913
Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/895 (43%), Positives = 540/895 (60%), Gaps = 96/895 (10%)
Query: 191 TVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQL 250
T +L+ G V DILV+ DRKR K+I ++ GT+A +A LP E + S+
Sbjct: 33 TAHLE-TGRHFRVEDILVKHHADRKRCKVIKESTHCGTKAIQDAFNLPHTASEEELRSKW 91
Query: 251 QEAYASIPQFRAQ-IDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
Q+A+ Q +D ++K + + +N IN+VC+P GL FP NNLQ MV+SGAKGST
Sbjct: 92 QDAHLHKDQRDFHMVDLKFKEVANLCSNEINKVCMPLGLHRSFPENNLQLMVQSGAKGST 151
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
VNTMQISCLLGQIELEG+RP +M SG++LP F PY+ SP++GGFV RF+TGI+P EFFF
Sbjct: 152 VNTMQISCLLGQIELEGRRPPLMPSGKSLPCFQPYDFSPKSGGFVASRFLTGIKPSEFFF 211
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
HCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL VHYD+TVRDSD S++Q YGEDGLD+
Sbjct: 212 HCMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLIVHYDLTVRDSDGSVVQFFYGEDGLDI 271
Query: 430 TKRQYLTDKQFSFLEDNIKWI-------------------CSYKVILNLLKKHPLSL--- 467
K Q+L KQF F+ +N K I ++ I KH + L
Sbjct: 272 PKTQFLQPKQFPFIAENHKVIEKSKHFDEILSRMDPEQANGHFRCIKRWQAKHQMPLRRE 331
Query: 468 -ALLLLLTFKSSG------KPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQ 520
L KS+G N ++ R T+ LL+ WY+LD+K+R+KY KK CP+
Sbjct: 332 GGFLQFYRKKSAGIRAQIPTGNHVYG--RDPATLQLLKMWYELDEKSRRKYLKKTTKCPE 389
Query: 521 PLISTFQPDAHFGSISENLADSVVKYTK----------GRTDASHVDKFYDMIFYKNLLS 570
+S ++PD HFGS+SE + V +T G+++ S + D++ K S
Sbjct: 390 TCLSVWRPDIHFGSVSETFENKVENFTGEWDTQNDLSCGKSELSS-QRLKDLLHLKWQQS 448
Query: 571 LANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPS 630
L +PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVTLGIPRLREILM+A+ IKTP
Sbjct: 449 LCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPM 508
Query: 631 MEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISP--EPHMNYQMKFCFI 688
M +P L + K K+A RL K +TR+ + +VLEK+ KE L + H Y ++F F+
Sbjct: 509 MSVPVL-NTAKAHKRAKRLKKQLTRVCLGEVLEKIDTKESLRLEEMQNKHRFYTIRFSFL 567
Query: 689 PAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDE 748
P YR++ VKPS I+ E +F K L I K++++ L N +R + DV D
Sbjct: 568 PYECYREEKYVKPSDILRFMESRFFKTLLETIKKKSSK-LALYNTVSTRRAAQRDVND-- 624
Query: 749 GEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDF--EEPEDEERMSEREEDD 806
G E + +VD SD+ + ED + + ++E+N+ +EPE ++ S
Sbjct: 625 --GVENVASQENQVDYESDDANETED-----EDIPEQEENEVNPDEPESQDEPSAPCPLR 677
Query: 807 NTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLF----------LP 856
S+ ++ EF + V+ H + Y+YD N +WC++ LP
Sbjct: 678 RKSHKKKKEPNEFAQQR---ISAVLESHGAIESYTYDTDNELWCEISLKLPLIKEYFDLP 734
Query: 857 S-------------------NLFEEKESKH-----LLKTDGINVNFISQYRHLLDLNKLY 892
S L E +K+ L+T+GIN+ + +Y ++D+NKLY
Sbjct: 735 SLVTSLANNIVIHETKGITRCLLNETSNKNGEVVLTLQTEGINLPELFRYADIIDVNKLY 794
Query: 893 VNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNG 952
NDIH +ASTYGIEAA +V+ +E+K+VFA YGI VDPRHLSLV+DYM G Y +NR+G
Sbjct: 795 CNDIHAVASTYGIEAALKVLEKEIKDVFAAYGIVVDPRHLSLVSDYMCFEGIYKPLNRHG 854
Query: 953 IRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLR 1007
I+ + S +Q+MTFE + +++A+M G D L++PSA +++G+ + GTGLF+L+
Sbjct: 855 IQSSSSPLQQMTFETSYKFLKEATMLGSHDELQSPSACLVVGKVVKGGTGLFELK 909
>gi|56405368|sp|P91875.2|RPA1_DROME RecName: Full=DNA-directed RNA polymerase I subunit RPA1; Short=RNA
polymerase I subunit A1; AltName: Full=DNA-directed RNA
polymerase I largest subunit; AltName: Full=DNA-directed
RNA polymerase I subunit A
Length = 1642
Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/761 (49%), Positives = 490/761 (64%), Gaps = 48/761 (6%)
Query: 2 DGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLT 57
DG NA S +AEA L+NV+S YLVPKDG+PL GLIQDHVISG KLS+R F
Sbjct: 567 DGDEMNAHYPQSEVARAEAYNLVNVASNYLVPKDGTPLGGLIQDHVISGVKLSIRGRFFN 626
Query: 58 RAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELL 117
R +Y LV+Q L L +I+ LPPTI KP LW+GKQ+LST+IIN+ P+ I + +
Sbjct: 627 REDYQQLVFQGLSQLKKDIKLLPPTILKPAVLWSGKQILSTIIINIIPEGYERI-NLDSF 685
Query: 118 SGILDKKQ---------FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVH 168
+ I K G+ G + + ++ V IR+GELL G+LDK+Q+G+T YGL+H
Sbjct: 686 AKIAGKNWNVSRPRPPICGTNPEG--NDLSESQVQIRNGELLVGVLDKQQYGATTYGLIH 743
Query: 169 AVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGT 228
+++ +G + + LL+ K+FT +LQ GFTLGV+DILV DRKR KII + R +G
Sbjct: 744 CMYELYGGDVSTLLLTAFTKVFTFFLQLEGFTLGVKDILVTDVADRKRRKIIRECRNVGN 803
Query: 229 EAACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGL 288
A AL L + + + +++ AY +FR +DR+YKSLLD TN+IN CLP GL
Sbjct: 804 SAVAAALELEDEPPHDELVEKMEAAYVKDSKFRVLLDRKYKSLLDGYTNDINSTCLPRGL 863
Query: 289 IEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSP 348
I FP+NNLQ MV SGAKGS VNTMQISCLLGQIELEGKRP +M+SG++LPSF +E SP
Sbjct: 864 ITKFPSNNLQLMVLSGAKGSMVNTMQISCLLGQIELEGKRPPLMISGKSLPSFTSFETSP 923
Query: 349 RAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDM 408
++GGF+DGRFMTGIQPQ+FFFHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEGL+VHYD+
Sbjct: 924 KSGGFIDGRFMTGIQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSVHYDL 983
Query: 409 TVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFS-FLEDNIKWICS--------------- 452
TVRDSD S++Q LYGEDGLD+ K ++ DK + FL N I
Sbjct: 984 TVRDSDNSVVQFLYGEDGLDILKSKFFNDKFCADFLTQNATAILRPAQLQLMKDEEQLAK 1043
Query: 453 ----YKVILNLLKKHPLSLALLL------LLTFKSSGKPNFIFS-PHRTKFTMDLLEQWY 501
K I + KK P L L +PN I S R +F LL+ W
Sbjct: 1044 VQRHEKHIRSWEKKKPAKLRAAFTHFSEELREEVEVKRPNEINSKTGRRRFDEGLLKLWK 1103
Query: 502 QLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYD 561
+ D + + YRKK+ CP P ++ ++ D ++GS+SE + Y K + + D
Sbjct: 1104 KADAEDKALYRKKYARCPDPTVAVYKQDLYYGSVSERTRKLITDYAKRKPALK--ETIAD 1161
Query: 562 MIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMM 621
++ K + SLA PGE VG++AAQSIGEPSTQMTLNTFHFAGRG+MNVTLGIPRLREILM+
Sbjct: 1162 IMRVKTIKSLAAPGEPVGLIAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILML 1221
Query: 622 ATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNY 681
A+ IKTPSM+IP P + +A +L ++ +T+A++LE V + L + PE Y
Sbjct: 1222 ASSNIKTPSMDIPIKPGQ---QHQAEKLRINLNSVTLANLLEYVHVSTGLTLDPERSYEY 1278
Query: 682 QMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAK 722
M+F F+P +Y++ V+P II + + F K+L AI K
Sbjct: 1279 DMRFQFLPREVYKEDYGVRPKHIIKYMHQTFFKQLIRAILK 1319
Score = 170 bits (430), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 86/203 (42%), Positives = 126/203 (62%), Gaps = 30/203 (14%)
Query: 834 HNIVHKYSYDKKNHMWCKLLFLPSN------------------------------LFEEK 863
+++V Y+YDK+NH+WC++ S +++
Sbjct: 1435 NDMVKAYTYDKENHLWCQVKLNLSVRYQKPDLTSIIRELAGKSVVHQVQHIKRAIIYKGN 1494
Query: 864 ESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
+ LLKTDGIN+ + Q+ +LDLN+LY NDIH +A TYGIEAA++VI++EV NVF VY
Sbjct: 1495 DDDQLLKTDGINIGEMFQHNKILDLNRLYSNDIHAIARTYGIEAASQVIVKEVSNVFKVY 1554
Query: 924 GIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDS 983
GI VD RHLSL+ADYMT GT+ ++R G+ + S +Q+M+FE L+ ++ A+ GR D
Sbjct: 1555 GITVDRRHLSLIADYMTFDGTFQPLSRKGMEHSSSPLQQMSFESSLQFLKSAAGFGRADE 1614
Query: 984 LRAPSARVMLGQECRQGTGLFQL 1006
L +PS+R+M+G R GTG F+L
Sbjct: 1615 LSSPSSRLMVGLPVRNGTGAFEL 1637
>gi|17647875|ref|NP_523743.1| RNA polymerase I subunit [Drosophila melanogaster]
gi|7303170|gb|AAF58234.1| RNA polymerase I subunit [Drosophila melanogaster]
Length = 1642
Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/761 (49%), Positives = 490/761 (64%), Gaps = 48/761 (6%)
Query: 2 DGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLT 57
DG NA S +AEA L+NV+S YLVPKDG+PL GLIQDHVISG KLS+R F
Sbjct: 567 DGDEMNAHYPQSEVARAEAYNLVNVASNYLVPKDGTPLGGLIQDHVISGVKLSIRGRFFN 626
Query: 58 RAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELL 117
R +Y LV+Q L L +I+ LPPTI KP LW+GKQ+LST+IIN+ P+ I + +
Sbjct: 627 REDYQQLVFQGLSQLKKDIKLLPPTILKPAVLWSGKQILSTIIINIIPEGYERI-NLDSF 685
Query: 118 SGILDKKQ---------FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVH 168
+ I K G+ G + + ++ V IR+GELL G+LDK+Q+G+T YGL+H
Sbjct: 686 AKIAGKNWNVSRPRPPICGTNPEG--NDLSESQVQIRNGELLVGVLDKQQYGATTYGLIH 743
Query: 169 AVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGT 228
+++ +G + + LL+ K+FT +LQ GFTLGV+DILV DRKR KII + R +G
Sbjct: 744 CMYELYGGDVSTLLLTAFTKVFTFFLQLEGFTLGVKDILVTDVADRKRRKIIRECRNVGN 803
Query: 229 EAACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGL 288
A AL L + + + +++ AY +FR +DR+YKSLLD TN+IN CLP GL
Sbjct: 804 SAVAAALELEDEPPHDELVEKMEAAYVKDSKFRVLLDRKYKSLLDGYTNDINSTCLPRGL 863
Query: 289 IEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSP 348
I FP+NNLQ MV SGAKGS VNTMQISCLLGQIELEGKRP +M+SG++LPSF +E SP
Sbjct: 864 ITKFPSNNLQLMVLSGAKGSMVNTMQISCLLGQIELEGKRPPLMISGKSLPSFTSFETSP 923
Query: 349 RAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDM 408
++GGF+DGRFMTGIQPQ+FFFHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEGL+VHYD+
Sbjct: 924 KSGGFIDGRFMTGIQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSVHYDL 983
Query: 409 TVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFS-FLEDNIKWICS--------------- 452
TVRDSD S++Q LYGEDGLD+ K ++ DK + FL N I
Sbjct: 984 TVRDSDNSVVQFLYGEDGLDILKSKFFNDKFCADFLTQNATAILRPAQLQLMKDEEQLAK 1043
Query: 453 ----YKVILNLLKKHPLSLALLL------LLTFKSSGKPNFIFS-PHRTKFTMDLLEQWY 501
K I + KK P L L +PN I S R +F LL+ W
Sbjct: 1044 VQRHEKHIRSWEKKKPAKLRAAFTHFSEELREEVEVKRPNEINSKTGRRRFDEGLLKLWK 1103
Query: 502 QLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYD 561
+ D + + YRKK+ CP P ++ ++ D ++GS+SE + Y K + + D
Sbjct: 1104 KADAEDKALYRKKYARCPDPTVAVYKQDLYYGSVSERTRKLITDYAKRKPALK--ETIAD 1161
Query: 562 MIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMM 621
++ K + SLA PGE VG++AAQSIGEPSTQMTLNTFHFAGRG+MNVTLGIPRLREILM+
Sbjct: 1162 IMRVKTIKSLAAPGEPVGLIAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILML 1221
Query: 622 ATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNY 681
A+ IKTPSM+IP P + +A +L ++ +T+A++LE V + L + PE Y
Sbjct: 1222 ASSNIKTPSMDIPIKPGQ---QHQAEKLRINLNSVTLANLLEYVHVSTGLTLDPERSYEY 1278
Query: 682 QMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAK 722
M+F F+P +Y++ V+P II + + F K+L AI K
Sbjct: 1279 DMRFQFLPREVYKEDYGVRPKHIIKYMHQTFFKQLIRAILK 1319
Score = 169 bits (429), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 86/203 (42%), Positives = 126/203 (62%), Gaps = 30/203 (14%)
Query: 834 HNIVHKYSYDKKNHMWCKLLFLPSN------------------------------LFEEK 863
+++V Y+YDK+NH+WC++ S +++
Sbjct: 1435 NDMVKAYTYDKENHLWCQVKLNLSVRYQKPDLTSIIRELAGKSVVHQVQHIKRAIIYKGT 1494
Query: 864 ESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
+ LLKTDGIN+ + Q+ +LDLN+LY NDIH +A TYGIEAA++VI++EV NVF VY
Sbjct: 1495 DDDQLLKTDGINIGEMFQHNKILDLNRLYSNDIHAIARTYGIEAASQVIVKEVSNVFKVY 1554
Query: 924 GIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDS 983
GI VD RHLSL+ADYMT GT+ ++R G+ + S +Q+M+FE L+ ++ A+ GR D
Sbjct: 1555 GITVDRRHLSLIADYMTFDGTFQPLSRKGMEHSSSPLQQMSFESSLQFLKSAAGFGRADE 1614
Query: 984 LRAPSARVMLGQECRQGTGLFQL 1006
L +PS+R+M+G R GTG F+L
Sbjct: 1615 LSSPSSRLMVGLPVRNGTGAFEL 1637
>gi|1865779|emb|CAA70321.1| largest subunit of RNA polymerase I (A) [Drosophila melanogaster]
Length = 1644
Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/755 (48%), Positives = 488/755 (64%), Gaps = 48/755 (6%)
Query: 2 DGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLT 57
DG NA S +AEA L+NV+S YLVPKDG+PL GLIQDHVISG KLS+R F
Sbjct: 568 DGDEMNAHYPQSEVARAEAYNLVNVASNYLVPKDGTPLGGLIQDHVISGVKLSIRGRFFN 627
Query: 58 RAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELL 117
R +Y LV+Q L L +I+ LPPTI KP LW+GKQ+LST+IIN+ P+ I + +
Sbjct: 628 REDYQQLVFQGLSQLKKDIKLLPPTILKPAVLWSGKQILSTIIINIIPEGYERI-NLDSF 686
Query: 118 SGILDKKQ---------FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVH 168
+ I K G+ G + + ++ V IR+GELL G+LDK+Q+G+T YGL+H
Sbjct: 687 AKIAGKNWNVSRPRPPICGTNPEG--NDLSESQVQIRNGELLVGVLDKQQYGATTYGLIH 744
Query: 169 AVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGT 228
+++ +G + + L++ K+FT +LQ GFTLGV+DILV DRKR KII + R +G
Sbjct: 745 CMYELYGGDVSTLLVTAFTKVFTFFLQLEGFTLGVKDILVTDVADRKRRKIIRECRNVGN 804
Query: 229 EAACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGL 288
A AL L + + + +++ AY +FR +DR+YKSLLD TN+IN CLP GL
Sbjct: 805 SAVAAALELEDEPPHDELVEKMEAAYVKDSKFRVLLDRKYKSLLDGYTNDINSTCLPRGL 864
Query: 289 IEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSP 348
I FP+NNLQ MV SGAKGS VNTMQISCLLGQIELEGKRP +M+SG++LPSF +E SP
Sbjct: 865 ITKFPSNNLQLMVLSGAKGSMVNTMQISCLLGQIELEGKRPPLMISGKSLPSFTSFETSP 924
Query: 349 RAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDM 408
++GGF+DGRFMTGIQPQ+FFFHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEGL+VHYD+
Sbjct: 925 KSGGFIDGRFMTGIQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSVHYDL 984
Query: 409 TVRDSDLSLIQVLYGEDGLDVTKRQYLTDK-----------------QFSFLEDN---IK 448
TVRDSD S++Q LYGEDGLD+ K ++ DK Q ++D +K
Sbjct: 985 TVRDSDNSVVQFLYGEDGLDILKSKFFNDKFCADFLTQNATAILRPAQLQLMKDEEQLVK 1044
Query: 449 WICSYKVILNLLKKHPLSLALLL------LLTFKSSGKPNFIFS-PHRTKFTMDLLEQWY 501
K I + KK P L L +PN + S R +F LL+ W
Sbjct: 1045 VQRHEKHIRSWEKKKPAKLRAAFTHFSEELREEVEVKRPNEVNSKTGRRRFDEGLLKLWK 1104
Query: 502 QLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYD 561
+ D + + YRKK+ CP P ++ ++ D ++GS+SE + Y K + + D
Sbjct: 1105 KADAEDKALYRKKYARCPDPTVAVYKQDLYYGSVSERTRKLITDYAKRKPALK--ETIAD 1162
Query: 562 MIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMM 621
++ K + SLA PGE VG++AAQSIGEPSTQMTLNTFHFAGRG+MNVTLGIPRLREILM+
Sbjct: 1163 IMRVKTIKSLAAPGEPVGLIAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILML 1222
Query: 622 ATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNY 681
A+ IKTPSM+IP P + +A +L ++ +T+A++LE V + L + PE Y
Sbjct: 1223 ASSNIKTPSMDIPIKPGQ---QHQAEKLRINLNSVTLANLLEYVHVSTGLTLDPERSYEY 1279
Query: 682 QMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKEL 716
M+F F+P +Y++ V+P II + + F K+L
Sbjct: 1280 DMRFQFLPREVYKEDYGVRPKHIIKYMHQTFFKQL 1314
Score = 169 bits (429), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 86/203 (42%), Positives = 126/203 (62%), Gaps = 30/203 (14%)
Query: 834 HNIVHKYSYDKKNHMWCKLLFLPSN------------------------------LFEEK 863
+++V Y+YDK+NH+WC++ S +++
Sbjct: 1437 NDMVKAYTYDKENHLWCQVKLNLSVRYQKPDLTSIIRELAGKSVVHQVQHIKRAIIYKGN 1496
Query: 864 ESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
+ LLKTDGIN+ + Q+ +LDLN+LY NDIH +A TYGIEAA++VI++EV NVF VY
Sbjct: 1497 DDDQLLKTDGINIGEMFQHNKILDLNRLYSNDIHAIARTYGIEAASQVIVKEVSNVFKVY 1556
Query: 924 GIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDS 983
GI VD RHLSL+ADYMT GT+ ++R G+ + S +Q+M+FE L+ ++ A+ GR D
Sbjct: 1557 GITVDRRHLSLIADYMTFDGTFQPLSRKGMEHSSSPLQQMSFESSLQFLKSAAGFGRADE 1616
Query: 984 LRAPSARVMLGQECRQGTGLFQL 1006
L +PS+R+M+G R GTG F+L
Sbjct: 1617 LSSPSSRLMVGLPVRNGTGAFEL 1639
>gi|71998295|ref|NP_001022450.1| Protein RPOA-1, isoform a [Caenorhabditis elegans]
gi|5596656|emb|CAB07687.2| Protein RPOA-1, isoform a [Caenorhabditis elegans]
Length = 1737
Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/1088 (38%), Positives = 599/1088 (55%), Gaps = 107/1088 (9%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
SH + E + NV S +LVPKD +PL GLIQDHV+SG LS+RD FL + ++M+LV +
Sbjct: 640 SHIAQTEVREIANVGSNFLVPKDATPLLGLIQDHVVSGVLLSVRDRFLNKEDFMHLVLAS 699
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQ--- 125
+ I PPTI P LWTGKQV++T++ N P K +I LD K
Sbjct: 700 FAQYSKRIEIPPPTILYPKRLWTGKQVITTIVKNCIPDGKPLIN--------LDGKAKTP 751
Query: 126 --------FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAE 177
F + Q+ + ++HV R GELL G+LDK FG+TQ+GL H ++ +G
Sbjct: 752 LSCWIVPGFDAPQFDM----SESHVVFRQGELLVGVLDKAHFGATQFGLAHCAFELYGHR 807
Query: 178 HAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL 237
+ LLSC ++LFT YLQ GFTLGV DILV ++ D KR + + ++R +G + A GL
Sbjct: 808 CGVQLLSCFSRLFTTYLQFHGFTLGVADILVVKDADGKRKEAVMESRTIGNQVVKTAFGL 867
Query: 238 PLDTDPEIISSQLQEAYASIPQFRA----QIDRQYKSLLDKVTNNINQVCLPEGLIEPFP 293
P P I L Y + P+ + +D K + K + I + C+P GL+ FP
Sbjct: 868 PDTATPAEIKRTLAATYCN-PRGQGTDVKMLDFGMKQGIAKYNDAITKSCVPTGLLRLFP 926
Query: 294 ANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGF 353
N LQ M++SGAKGS VN +QIS LGQIELEGKR A+ ++GRTLPSF ++ SPRAGG+
Sbjct: 927 QNALQLMIQSGAKGSAVNAIQISGCLGQIELEGKRMAVTIAGRTLPSFRCFDPSPRAGGY 986
Query: 354 VDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDS 413
+D RF+TG+ PQE FFH MAGREGLIDTAVKTSRSGYLQRC++KHLEG+ VHYD TVRD
Sbjct: 987 IDQRFLTGMNPQELFFHTMAGREGLIDTAVKTSRSGYLQRCIIKHLEGIRVHYDSTVRDH 1046
Query: 414 DLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIK---------WICSYKVILNLLKKHP 464
D S+IQ YGEDG+D TK +L K FLEDN++ + + +K
Sbjct: 1047 DGSVIQFRYGEDGMDTTKATFLNKKTMPFLEDNLEAVTLASKPEGVTDADFGIKETEKRY 1106
Query: 465 LSLALLLLLTFKS--SGKPNFIFSPHRTKFTMD--------LLEQWYQLDDKARKKYRKK 514
+ KS SG FS T F+ + +L W++L + R++Y +
Sbjct: 1107 KKIVKWKKKAEKSGKSGTKKSYFSAF-TNFSAEHIGMEKKRILAMWFELSLEEREQYARG 1165
Query: 515 F-KACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDK-----FYDMIFYKNL 568
K CP+ + F P G++ E + D + + R ++ +++K +
Sbjct: 1166 IPKKCPEAVDERFNPTCKLGALPEKMLDEIEGFCTRRVKKVDDEEPPKEVLKRTLYWKGM 1225
Query: 569 LSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKT 628
SLA+PGENVG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVTLGIPRLREILM A+K+I T
Sbjct: 1226 RSLADPGENVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMTASKSIAT 1285
Query: 629 PSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISP-EPHMNYQMKFCF 687
PS I + + + + + + + R+ + +L+ ++E + ++ + Y ++
Sbjct: 1286 PSASIAVIAGTSR--DRIDSIKRELDRVYLKQLLKNFSLEEKITLTQNQSCRRYHLRIDI 1343
Query: 688 IPAHMYR-DKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVED 746
+ A +K S+I++ E++F+ + AI K+ + + + +
Sbjct: 1344 LAAEKRELGARHLKRSQIMEEIEKRFILRVAQAIKKKYHEITDYQQMSHRTMRQGNMAAG 1403
Query: 747 DEGEGAEGAGAALGRVDVSSDEERD---EEDAVQS--HKKVNQEEDNDFEEPEDEER--- 798
E G + G SSDEE D E DA ++ H++ +++E D+E ++E
Sbjct: 1404 IETGGTKNRGLQGPDNGDSSDEEADGGREADAAEARLHRR-HRDEGADYEGEDEERVEVR 1462
Query: 799 -----MSEREEDDNTSNI-GERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKL 852
M ED + GE E + ++ V + Y+YD K++ WC++
Sbjct: 1463 EEEEPMDSDSEDVKKEGLDGEDQTTEPLLVNSSRIQSVQRLSENISSYTYDVKSNKWCEV 1522
Query: 853 LF-LP----------------SNLF---------------EEKESKHL--LKTDGINVNF 878
+F LP LF E+K K + L+T G+N+
Sbjct: 1523 VFELPLRNKTKMDVSSIVEKEVELFIVHQTPGIERCVETTEQKNGKEMTILQTQGVNLAA 1582
Query: 879 ISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADY 938
++ +LD+N +Y ND++ + YG+EA ++ I E+ NVFAVYGIEV RHLSL ADY
Sbjct: 1583 FFKHADVLDVNSVYSNDLNLILENYGVEACSKAITTEMNNVFAVYGIEVSKRHLSLTADY 1642
Query: 939 MTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECR 998
MT +G NR + + S +QKMTFE + +R+A + G ED++ +PSAR+++G R
Sbjct: 1643 MTFTGQIQPFNRGAMSSSSSPLQKMTFETTMAFLREALLHGEEDNVNSPSARLVMGALPR 1702
Query: 999 QGTGLFQL 1006
GTG F L
Sbjct: 1703 GGTGSFDL 1710
>gi|410927310|ref|XP_003977092.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Takifugu
rubripes]
Length = 1749
Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/941 (41%), Positives = 540/941 (57%), Gaps = 110/941 (11%)
Query: 2 DGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLT 57
DG NA S +AEA L++ QYLVPKDG PL+GLIQDH++SG +++LR F T
Sbjct: 576 DGDEMNAHFPQSELARAEAYTLVSTDHQYLVPKDGKPLAGLIQDHMVSGTRMTLRGCFFT 635
Query: 58 RAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELL 117
RA+Y LVY+ L I+ LPP I+KP +WTGKQ++ST+++N+ P H +
Sbjct: 636 RAQYTELVYRGLTDKQGRIKLLPPAIFKPQQMWTGKQLVSTLLLNVIP-------HNAIP 688
Query: 118 SGILDKKQFGSTQYGLVHA----------VWDTHVTIRHGELLSGILDKKQFGSTQYGLV 167
++ K + S + V + D+ V I GELL G+LDK +GS+ YGLV
Sbjct: 689 LNLVGKSKIPSKAWIQVPPRSAPGYNPDNMCDSQVVICEGELLVGVLDKAHYGSSAYGLV 748
Query: 168 HAVWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRL 226
H ++ +G E + +LLSCLA+LFT YLQ GFTLGV DILV+ +R+R KII ++ ++
Sbjct: 749 HCCYELYGGETSGNLLSCLARLFTAYLQLFRGFTLGVEDILVKPNANRRRKKIIQQSLKI 808
Query: 227 GTEAACNALGLPLDTDPEIISSQLQEAYASIPQFR--AQIDRQYKSLLDKVTNNINQVCL 284
GT+A LP D + + Q+A+ + P R +D ++K + ++V N+IN+VC+
Sbjct: 809 GTKALKATFNLPSCMDQAEVQGRWQDAHLN-PDQRDFIMVDHKFKEVANQVNNDINKVCM 867
Query: 285 PEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPY 344
P GL FP NNLQ MV+SGAKGS+VNTMQISCLLGQIELEG+RP +M SG++LP F PY
Sbjct: 868 PVGLHTSFPDNNLQLMVQSGAKGSSVNTMQISCLLGQIELEGRRPPLMPSGKSLPCFQPY 927
Query: 345 EVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTV 404
+ +P AGGFV GRF+TGI+PQEFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V
Sbjct: 928 DPAPGAGGFVSGRFLTGIKPQEFFFHCMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVV 987
Query: 405 HYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHP 464
YD+TVRDSD S+IQ LYGEDGLDV K Q+L KQF F+E+N + I + + +L++
Sbjct: 988 QYDLTVRDSDGSVIQFLYGEDGLDVPKTQFLQPKQFPFIEENYQVIKKSQNLDEVLRRLD 1047
Query: 465 LSLALLLLLTFKSSGKPNFIFSPHRTKFTM-----------------------------D 495
A + + K + +P R F +
Sbjct: 1048 SQAAEKHFASIQRWRKKRELTNPRRGAFLLFSKKMLPKVKQRSQSAEADSVNGRSAVVQQ 1107
Query: 496 LLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGR----- 550
+L+QWY L++ +R KY +K ACP+P +S F+PD FGS+SE +Y + R
Sbjct: 1108 ILQQWYSLEECSRSKYSRKTAACPEPTLSLFRPDVCFGSVSETFHSITDRYLQERGQPRE 1167
Query: 551 --TDASHVDKFYDMIF--YKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDM 606
DA YK +L GE VG+LAAQSIGEPSTQMTLNTFHFAGRG+M
Sbjct: 1168 DVLDAHRCSSLLLQQLLNYKWQRALCEAGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEM 1227
Query: 607 NVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVK 666
NVTLGIPRLREILM+A+ IKTP M +P L L KKA L K +R+ + +VL K+
Sbjct: 1228 NVTLGIPRLREILMVASSNIKTPMMSVPVLNSKEAL-KKAKTLQKKFSRVCLTEVLHKID 1286
Query: 667 IKEWLEISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQ 726
+ E L+I + +++ F F+ Y D + P +I+ + E +F L I KR A+
Sbjct: 1287 VVETLQIENQRLRTFRITFHFLHPERYSDDKLLSPQQILSYMESRFFSLLMEVIKKRHAK 1346
Query: 727 GLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRV---------DVSSDEERDEEDAVQ 777
L ++ +E + D +D +G+ A G+ A R D+ ++ + D DA Q
Sbjct: 1347 -LASIAVETRKATTRD--KDQDGDVAAGSTPAGDRESEEEQEVVDDLGNEGDADASDAKQ 1403
Query: 778 SHKKV------------------------NQEEDNDFEE--PEDEERMSEREEDDNTSNI 811
K+ E ND +E PE E R D
Sbjct: 1404 KEKRAEEVDYESEEETDEEDKEDQGELEEESTEQNDLQEVRPETAEATGVRGRRDG---- 1459
Query: 812 GERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKL 852
+ E S + V V+ + +YS+D+++ +WC++
Sbjct: 1460 ----RKEEESSHQMRVNAVLQVSPAIQRYSFDQEHQLWCEV 1496
Score = 158 bits (400), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/140 (54%), Positives = 105/140 (75%)
Query: 868 LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 927
+L T+GINV+ + Q+ +LD+N+LY N++H MA+TYGIE A +VI +E+K+VFAVYGIEV
Sbjct: 1605 VLNTEGINVHELLQHSDVLDVNRLYSNEVHTMATTYGIEVALKVIEKEIKDVFAVYGIEV 1664
Query: 928 DPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAP 987
DPRHLSLVADYM G Y +NR+ I N S +Q+MTFE I+QA+M G D L +P
Sbjct: 1665 DPRHLSLVADYMCFEGIYKPLNRHAICSNSSPLQQMTFETSYRFIKQATMLGSHDRLVSP 1724
Query: 988 SARVMLGQECRQGTGLFQLR 1007
SA +++G+ + GTGLF+L+
Sbjct: 1725 SASLVVGKVVKGGTGLFELK 1744
>gi|393911384|gb|EFO26842.2| hypothetical protein LOAG_01639 [Loa loa]
Length = 1744
Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/1110 (37%), Positives = 611/1110 (55%), Gaps = 125/1110 (11%)
Query: 1 MDGWTQNASHFLK-----AEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTF 55
DG N HF++ E + ++NV S +LVPKDG+PL GLIQDHV+SG L++R F
Sbjct: 642 FDGDEMNG-HFVQNRIAQTELAEIVNVGSNFLVPKDGTPLLGLIQDHVVSGVLLTIRGRF 700
Query: 56 LTRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGE 115
+ ++M+LV A + PPT+ KP LW+GKQ++STV+ N P K ++
Sbjct: 701 FNKEDFMHLVLSAFAETTQRLVIPPPTMLKPQVLWSGKQIISTVLRNCIPLHKPLL---- 756
Query: 116 LLSGILDKKQFGSTQYGL------VHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHA 169
I K + + + + ++ ++ V R ELL G+LDK+ +GSTQYGL+H
Sbjct: 757 ---NIRSKAKTPLSCWKVEDHPAPKFSMSESEVIFRQAELLVGVLDKQHYGSTQYGLIHC 813
Query: 170 VWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTE 229
WD +G +A +LSC ++LFT +LQ GFTLGV DIL+R+E D++R K I R+ G
Sbjct: 814 CWDLYGHRYATRILSCFSRLFTTHLQYHGFTLGVADILIRKEADKQRKKEIKALRKCGDT 873
Query: 230 AACNALGLPLDTDPEIISSQLQEAYASIPQFRA----QIDRQYKSLLDKVTNNINQVCLP 285
L + D I + AY + P+ Q+D + K L++ IN C+P
Sbjct: 874 VVRECFNLDENADESEIKYVMASAYCN-PKGEQNHIQQLDYKMKETLNRFNERINSACMP 932
Query: 286 EGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYE 345
GLI+ FP N LQ M+ GAKG+ VN++QISC LGQIELEG RP M +GRTLPSF ++
Sbjct: 933 AGLIKLFPQNALQLMILCGAKGTMVNSVQISCELGQIELEGHRPPMTSAGRTLPSFRSFD 992
Query: 346 VSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVH 405
SPRAGGFVD RF+TGI PQE FFH MAGREGLIDTAVKTSRSGYLQRC+VKHLEGL
Sbjct: 993 TSPRAGGFVDQRFLTGINPQELFFHTMAGREGLIDTAVKTSRSGYLQRCIVKHLEGLVAQ 1052
Query: 406 YDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWI--CSYKVILNL---- 459
YD TVRD D S+IQ YGEDG+DV K ++ +QF FL DN++ + C V N
Sbjct: 1053 YDSTVRDHDGSIIQFRYGEDGMDVCKSTFMNSEQFDFLADNMQVLRSCILPVDYNEDQWD 1112
Query: 460 LKKHPLSLALLLLLTFKSSGKPNFIFSPHRTKFTMD--------LLEQWYQLDDKARKKY 511
LKK + + K I++ +F+ + + + W++L D R +Y
Sbjct: 1113 LKKCEKAYKKIKKWRRKYGLNERKIYTSGYVEFSKEYRGTPKEKIQKMWFELTDGERYEY 1172
Query: 512 RKKF-KACPQPLISTFQPDAHFGSISENLADSVVKYT--KGRTDAS-HVDKFYDMIFYKN 567
K KACP + P+ G++ + L D + +Y K T A +D F +++K
Sbjct: 1173 HSKAGKACPAAVDEKMNPNRCLGALPQKLLDDIDEYIGMKSVTGADISLDTFRKSLYWKG 1232
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
+ +PGENVG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVTLGIPRLREILM A+ IK
Sbjct: 1233 MRCRVDPGENVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMTASNDIK 1292
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCF 687
TPS EI P ++ + + + RI + ++++K I E + + + C+
Sbjct: 1293 TPSAEIHIKPGTS--SERIEAIKRELGRIYLKELIKKFTIDERVNLDEKESWR-----CY 1345
Query: 688 -IPAHMYRDKTSVKPSKIIDHF-ERKFLKELEV----AIAKRAAQGLKNMNIEQSRD--- 738
+ + R K + SK I H R+ L E+E AI KR + + M Q+
Sbjct: 1346 DLHIELLRTK---ERSKCIRHISRRRILAEVECRFAKAIGKRISDRCREMTDYQALQHKK 1402
Query: 739 ------------------QMEDDVEDDEGEG------AEGAGAALGRVDVSS--DEERDE 772
+ +D++ DE G AEG+ +D ++ + E DE
Sbjct: 1403 LKLRNLTIGIGEETPKPKKQDDELSSDEEVGGGIDLDAEGSRILKRHLDDAAEYEGEEDE 1462
Query: 773 EDAVQSHKKVNQE--EDNDFEEPEDEERMSEREEDDNTSNIGERFKIEFRDSTNVFVKDV 830
+ V +KV E + E E+ E +ER+ED N S R + + +++ +++V
Sbjct: 1463 QRVVLPQQKVEDTFMEISTESEEENTETTAERDEDVNDSYNAGRLRSQEAETSR--IQNV 1520
Query: 831 VNQHNIVHKYSYDKKNHMWCKLLF---------LPSNLFEEKESKH-------------- 867
+ ++ Y +D K++ WC ++F L E+E ++
Sbjct: 1521 IASSPLIRDYKFDVKSNRWCTIIFQLPLSTKTKLDVGALVERELENFLVWETPGIEKCII 1580
Query: 868 -----------LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREV 916
+L T GINV + ++ +LD+N LY ND++ + S YGIEA R +++E+
Sbjct: 1581 RCENRGDDRYQILATQGINVQALMKHSDVLDVNTLYSNDLNMICSNYGIEACGRALVKEI 1640
Query: 917 KNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQAS 976
VF YGI+++ RHL+L ADYMT +G +R + L+ S +Q+MTFE + +R A
Sbjct: 1641 IRVFTPYGIDINWRHLTLAADYMTFTGRIQPFSRGAMSLSTSPLQRMTFETTVAFMRDAL 1700
Query: 977 MQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+ G +D L +PS+R+++G R GTG+F +
Sbjct: 1701 INGDDDYLMSPSSRLVVGGLLRGGTGIFDV 1730
>gi|334313345|ref|XP_003339889.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
RPA1-like [Monodelphis domestica]
Length = 1831
Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/799 (45%), Positives = 495/799 (61%), Gaps = 48/799 (6%)
Query: 1 MDGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA S +AEAS L QYLVPKDG PL+GLIQDH++SGA+++ R F
Sbjct: 603 FDGDEMNAHFPQSELGRAEASVLACTDEQYLVPKDGQPLAGLIQDHMVSGARMTTRGCFF 662
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKV---IIRH 113
TR +YM LVY+ L ++ PP I KP PLWTGKQV+ST++IN+ P++ + +I
Sbjct: 663 TREQYMELVYRGLTDRVGRVKIFPPAILKPCPLWTGKQVVSTLLINIIPENHIPLNLIGK 722
Query: 114 GELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDT 173
++ K+ +T + A+ ++ V IR GELL G+LDK +GS+ YGLVH ++
Sbjct: 723 AKISGKAWIKQNARATPSCDLDALCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEV 782
Query: 174 HGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGTEAAC 232
+G E + +L+CLA+LFT YLQ GFTLGV DILVR + D KR ++ ++ R G A
Sbjct: 783 YGGETSGRVLTCLARLFTAYLQLYQGFTLGVEDILVRPQADAKRKSVVEESSRCGFRAIK 842
Query: 233 NALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCLPEGLIEP 291
A GLP T PE ++ Q+A+ S Q +D ++K ++ +N IN+ C+P GL
Sbjct: 843 AAFGLPDATTPEDAQTRWQDAHLSKDQRDFNMVDLKFKEEVNHYSNEINKACMPFGLHRG 902
Query: 292 FPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAG 351
FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PYEV+PR+G
Sbjct: 903 FPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMPSGKSLPCFEPYEVTPRSG 962
Query: 352 GFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVR 411
GFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V YD+TVR
Sbjct: 963 GFVTGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVR 1022
Query: 412 DSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLL 471
DSD S++Q LYGEDGLD+ K Q+L KQF FL N + I K + +L K + A
Sbjct: 1023 DSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLLSNYEAIRKSKHLDEVLSKMDPTQARRH 1082
Query: 472 LLTFKSSGKPNFIFSPHRTKF---------------------------TMDLLEQWYQLD 504
+ + P + F +L+ WY LD
Sbjct: 1083 FKALRKWHAKHPSICPRQGAFLSYSQKVQAAVRALNLTGENQNGRDPRAQQILKMWYDLD 1142
Query: 505 DKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK---GRTDASH------ 555
+K+++KY K+ CP P + ++PD HF S+SE + V Y + + + S+
Sbjct: 1143 EKSQRKYVKRALPCPDPSLGVWRPDIHFASVSETFENQVDAYAQEWAAQAERSYQKSELS 1202
Query: 556 VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRL 615
+D+ ++ K +L +PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVTLGIPRL
Sbjct: 1203 LDRLKTLLHLKWQRALCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRL 1262
Query: 616 REILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEW--LEI 673
REILM+A+ IKTP M +P L + K K+ L K +TR+ + +VL+KV ++E +E
Sbjct: 1263 REILMVASSNIKTPMMSVPVL-NTKKALKRVKSLKKQLTRVCLGEVLQKVDVQESFRMEE 1321
Query: 674 SPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNI 733
+ + Y ++F F+P Y+ + ++P I+ E +FLK L AI K+ ++ +
Sbjct: 1322 KKDKYRVYCIRFNFLPYKYYQQEKCLRPEDILHFIETRFLKLLLEAIKKKNSKASSFKAV 1381
Query: 734 EQSRDQMEDDVEDDEGEGA 752
R +D D E G+
Sbjct: 1382 STRRATQQDLDGDGETAGS 1400
Score = 151 bits (382), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/123 (59%), Positives = 94/123 (76%)
Query: 885 LLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGT 944
+LDL +LY NDIH MASTYGIEAA RVI +E+K+VFAVYGI VDPRHLSLVADYM G
Sbjct: 1705 ILDLRRLYSNDIHAMASTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGV 1764
Query: 945 YVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
Y +NR GI+ N S +Q+MTFE + +++A+M G D LR+PSA +++G+ + GTGLF
Sbjct: 1765 YKPLNRFGIQSNSSPLQQMTFETSFKFLKEATMMGAHDELRSPSACLVVGKVVKGGTGLF 1824
Query: 1005 QLR 1007
L+
Sbjct: 1825 DLK 1827
>gi|301615743|ref|XP_002937328.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Xenopus
(Silurana) tropicalis]
Length = 1665
Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/1130 (37%), Positives = 606/1130 (53%), Gaps = 183/1130 (16%)
Query: 1 MDGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA S +AEA L QYLVPKDG+PL+GLIQDH++SGA +++R F
Sbjct: 592 FDGDEMNAHFPQSELGRAEAYSLACTDEQYLVPKDGTPLAGLIQDHMVSGANMTIRGCFF 651
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKV---IIRH 113
TR +YM LVYQ L ++ LPP I KP PLWTGKQV+ST++IN+ P++ + +
Sbjct: 652 TREQYMELVYQGLTDKRGRVKVLPPAILKPYPLWTGKQVVSTLLINVIPENLIPLNLTGK 711
Query: 114 GELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDT 173
++ K+Q ++ ++ V IR GELL G+LDK +GS+ +GLVH ++
Sbjct: 712 AKISGKAWVKEQPRPIPGFSPDSMCESQVIIRDGELLCGVLDKAHYGSSSFGLVHCCYEL 771
Query: 174 HGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGTEAAC 232
+G E + LL+CLA+LFT YLQ GFTLGV DILV D +R I+ ++ G +A
Sbjct: 772 YGGETSGKLLTCLARLFTAYLQLYRGFTLGVEDILVLPYADAQRLNIVQQSLHCGGKAIR 831
Query: 233 NALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCLPEGLIEP 291
A L E + Q+A+ S Q +D ++K +++ N IN+VC+P GL P
Sbjct: 832 AAFNLSEAASDEEAHGKWQDAHLSKDQRDFNMVDLKFKEEVNQFNNEINKVCMPFGLHRP 891
Query: 292 FPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAG 351
FP NNLQ MV+SGAKGSTVNTM
Sbjct: 892 FPENNLQLMVQSGAKGSTVNTM-------------------------------------- 913
Query: 352 GFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVR 411
QEFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V YD+TVR
Sbjct: 914 -------------QEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVR 960
Query: 412 DSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKK--------- 462
DSD S+IQ LYGEDGLDV K Q+L KQF F+ +N + I K + +L +
Sbjct: 961 DSDGSVIQFLYGEDGLDVPKTQFLQPKQFPFIAENYEVIKQSKHLDEVLSRVNTEQAEQH 1020
Query: 463 ----------HP-LS--LALLLLLTFKS-----SGKPNFIFSPHRTKFTMDLLEQWYQLD 504
HP LS ++ LL + K + PN + R + +LE WY +
Sbjct: 1021 NHAIYRWKARHPNLSQRISPFLLYSQKQMAAAKASCPNELDENGRDLASRKVLESWYAAN 1080
Query: 505 DKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYT---KGRTDASH------ 555
+K R KY ++ P P ++ ++PD + GS+SEN + +Y + + D+SH
Sbjct: 1081 EKTRSKYVRRSSTLPDPCLAVWRPDLYLGSVSENFQSKMAQYGCLWEEQRDSSHGMSSLT 1140
Query: 556 VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRL 615
D ++ K +L +PG+ VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVTLGIPRL
Sbjct: 1141 FDSLKTLLHLKWQRALCDPGDAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRL 1200
Query: 616 REILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEIS- 674
REILM+A+ IKTP M +P L + K KK +L K +TR+ +A+V+ K+ ++E I
Sbjct: 1201 REILMVASANIKTPMMSVPVL-NTKKAVKKVKQLKKKLTRVCLAEVIHKLDVEETFRIEE 1259
Query: 675 -PEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNI 733
+ + Y+++F F+P YR + ++P ++ E +F K + AI KR + L +
Sbjct: 1260 KSQKYQVYKIRFHFLPHEYYRQEKLLRPEGVLRFMETRFFKIMFDAI-KRKSSKLASFRE 1318
Query: 734 EQSRDQMEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDND---- 789
+R + D D E +G + + V ++EE+ D + + D
Sbjct: 1319 VGTRRATQKDHGDGEDQGNQESQP------VENEEEQVNADDDDDDAEEGDADATDKKRR 1372
Query: 790 -----------------------FEEPEDEERMSEREEDDNTSNIGERFK------IEFR 820
PE E S + +NT +I + + + R
Sbjct: 1373 KKQEEEVDYESEEEEAEEDNEEEVGSPEAGEETSA-DVKENTGDIVDEIEENSHSPVPAR 1431
Query: 821 DSTNVFVKDVVNQHNI---------VHKYSYDKKNHMWCKL------------------- 852
+ K+VV ++ I + Y YD +N +WC++
Sbjct: 1432 RPQSGLAKEVVAENRINDVLSLNSAIEDYCYDTENSLWCEITIKLQLMKIHFDICSLVSS 1491
Query: 853 ---------------LFLPSNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIH 897
L ++ + + +L T+GIN+ + +Y ++L+L +LY NDIH
Sbjct: 1492 LAHSAIVHETSGITRCLLNDTANKQGDKELILNTEGINLYELFKYSNILELRRLYSNDIH 1551
Query: 898 YMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNP 957
MA T+GIEAA RV+ RE+K+VFAVYGIEVDPRHLSLVADYM GTY +NR G++ +
Sbjct: 1552 TMAKTFGIEAALRVVEREIKDVFAVYGIEVDPRHLSLVADYMCFEGTYKPLNRIGMQSSS 1611
Query: 958 SFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLR 1007
S Q+MTFE + ++ A+M G D L++PSA +++G+ + GTGLF L+
Sbjct: 1612 SPFQQMTFETSYKFLKDATMNGARDDLQSPSACLVVGKVVKGGTGLFDLK 1661
>gi|449273568|gb|EMC83052.1| DNA-directed RNA polymerase I subunit RPA1, partial [Columba livia]
Length = 910
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/907 (42%), Positives = 541/907 (59%), Gaps = 103/907 (11%)
Query: 203 VRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQEAYASIPQFR- 261
+ DILV+ + D KR KII K+++ G EA AL LP E + + Q+A+ Q
Sbjct: 1 IEDILVKPKADHKRQKIIEKSKKGGIEAVRAALNLPETASCEEVQGKWQDAHLCKDQRDF 60
Query: 262 AQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQ 321
+D ++K ++ +N +N+VC+P GL FP NNLQ MV+SGAKGSTVNTMQISCLLGQ
Sbjct: 61 NMVDLKFKEEVNNYSNEVNKVCMPLGLHRSFPENNLQLMVQSGAKGSTVNTMQISCLLGQ 120
Query: 322 IELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDT 381
IELEG+RP +M SG++LP F PY+ SP +GGFV GRF+TGI+P EFFFHCMAGREGL+DT
Sbjct: 121 IELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVTGRFLTGIKPSEFFFHCMAGREGLVDT 180
Query: 382 AVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFS 441
AVKTSRSGYLQRC++KHLEGL V YD+TVRDSD S++Q LYGEDGLD+ K Q+L +QF
Sbjct: 181 AVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPEQFP 240
Query: 442 FLEDNIKWI-------------------CSYKVILNLLKKHPLSL----ALLLLLTFKSS 478
F+ +N + I +K I +H S+ LL K +
Sbjct: 241 FIAENYEVIQKTNHLDEALTRMESRQANQQFKAIKKWRARHQNSVQREGGFLLFAQKKMA 300
Query: 479 G----KPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGS 534
P R T+ LL+ WY+LD+K R+KY KK CP P + ++PD +F S
Sbjct: 301 SVKAQTPEGEVKYGRDAATLQLLKMWYELDEKKRRKYLKKANKCPDPSLGVWRPDTYFAS 360
Query: 535 ISENLADSVVKYT--------KGRTDAS-HVDKFYDMIFYKNLLSLANPGENVGVLAAQS 585
+SE + V Y +G T + D+ D+++ K SL +PGE VG+LAAQS
Sbjct: 361 VSETFENGVEAYINRWESENRQGYTCPTLSSDRLKDLLYLKWQRSLCDPGEAVGLLAAQS 420
Query: 586 IGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKK 645
IGEPSTQMTLNTFHFAGRG+MNVTLGIPRLREILM+A+ IKTP+M +P + K KK
Sbjct: 421 IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPTMSVPVF-NTKKALKK 479
Query: 646 ANRLAKSMTRITMADVLEKVKIKEWLEISPE--PHMNYQMKFCFIPAHMYRDKTSVKPSK 703
+L K +TR+ +A+VL+K++I+E L + + H Y+++F F+P Y+++ VKP
Sbjct: 480 VKQLKKQLTRVCLAEVLQKIEIEESLRVKCKQNKHRLYKIRFHFLPREYYQEEKCVKPRD 539
Query: 704 IIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMED-DVEDDEGEGAEGAGAALGRV 762
I+ E +F K AI +++A+ + + +D D + D+ + ++ A A V
Sbjct: 540 ILHFMETRFFKIFLEAIKRKSAKMASFTEVSARKATRKDLDGDQDKIQDSQEAPAEEEEV 599
Query: 763 DVSSDEERDEEDAVQSHKKVNQEEDNDF------------EEPEDEERMSEREE------ 804
V ++ + + DA ++ ++ NQEE+ D+ E EDEE SE+EE
Sbjct: 600 IVDAEADEGDGDATEAKRRKNQEEEVDYESEEENGEEDVGENVEDEEADSEKEEGTPSAE 659
Query: 805 ----------DDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKL-L 853
N S + + K S +V + V++ H + Y +D +N +WC++ L
Sbjct: 660 GDKKEADGDGSQNLSFVSQTKKDRLLQSADVRINAVLDSHPSIQDYLFDTENELWCEVSL 719
Query: 854 FLP----------------------------SNLFEEKESKH-----LLKTDGINVNFIS 880
LP L E +KH +L T+GIN+ +
Sbjct: 720 TLPLMKVYFDVSSLLVSVARNTVIHEVKGITRCLLNESTNKHGEKELVLHTEGINLAELF 779
Query: 881 QYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMT 940
+Y +LDLN+LY NDIH MA YGIE+A RVII+E+K+VFAVYGIEVDPRHLSLVADYM
Sbjct: 780 RYSDILDLNRLYSNDIHAMAKNYGIESALRVIIKEIKDVFAVYGIEVDPRHLSLVADYMC 839
Query: 941 HSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQG 1000
G Y +NR GI+ N S +Q+MTFE + +++A+M G D LR+PSA +++G+ + G
Sbjct: 840 FEGFYKPLNRFGIQSNSSPLQQMTFETSYKFLKEATMMGAHDELRSPSACLVVGKVVKGG 899
Query: 1001 TGLFQLR 1007
TGLF L+
Sbjct: 900 TGLFDLK 906
>gi|311252217|ref|XP_003124986.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Sus scrofa]
Length = 1719
Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/841 (44%), Positives = 509/841 (60%), Gaps = 67/841 (7%)
Query: 2 DGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLT 57
DG NA S +AEA L QYLVPKDG PL+GLIQDH++SGA +++R F T
Sbjct: 590 DGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFT 649
Query: 58 RAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELL 117
R +YM LVY+ L ++ PP I KP PLWTGKQV+ST++IN+ P+D++ +
Sbjct: 650 REQYMELVYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDQIPL------ 703
Query: 118 SGILDKKQFGSTQY---------GL-VHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLV 167
+L K + G + G + + ++ V IR GELL G+LDK +GS+ YGLV
Sbjct: 704 -NLLGKAKIGGKAWVKEAPRPVPGFNPNLMCESQVVIRDGELLCGVLDKAHYGSSAYGLV 762
Query: 168 HAVWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRL 226
H ++ +G E + +L+CLA+LFT YLQ GFTLGV DILV+ D +R +II ++ R
Sbjct: 763 HCCYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPRADVRRHRIIEESTRC 822
Query: 227 GTEAACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCLP 285
G A AL LP + + + Q+A+ S Q ID ++K ++ +N IN+ C+P
Sbjct: 823 GPRAVRAALNLPEAASCDEVRGKWQDAHLSKDQRDFNMIDLKFKEEVNHHSNEINKACMP 882
Query: 286 EGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYE 345
GL FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PYE
Sbjct: 883 LGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYE 942
Query: 346 VSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVH 405
+PRAGGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V
Sbjct: 943 FTPRAGGFVTGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQ 1002
Query: 406 YDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPL 465
YD+TVRDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I K + +L K
Sbjct: 1003 YDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSKHLREVLSKAEP 1062
Query: 466 SLALLLLLTFK--SSGKPNFIFSP-------------------------HRTKFTMDLLE 498
AL K S N + R+ T +L
Sbjct: 1063 KKALRHFRAIKKWQSRHSNSLLREGAFLNYSQKIQAAVKALNLEGANQNGRSPETHQVLR 1122
Query: 499 QWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYT---KGRTDASH 555
W +LD+++R+KY+KK CP P +S ++PD +F S+SE + Y+ + + SH
Sbjct: 1123 MWSELDEQSRRKYQKKAAPCPDPSLSVWRPDIYFASVSETFEKKMDDYSLEWAAQAEKSH 1182
Query: 556 ------VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVT 609
+++ ++ K SL +PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVT
Sbjct: 1183 EKSELSLERLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVT 1242
Query: 610 LGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKE 669
LGIPRLREILM+A+ IKTP M +P + + KK L K +TR+ + +VLEK+ ++E
Sbjct: 1243 LGIPRLREILMVASANIKTPMMSVPVF-NTRRALKKVKSLKKQLTRVCLGEVLEKIDVQE 1301
Query: 670 WLEISPE--PHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKR--AA 725
+ + YQ++F F+P Y+ + ++P I+ E +F K L +I K+ A
Sbjct: 1302 SFSMGEKQAKFRVYQLRFQFLPYACYQQEKCLRPEDILHFMETRFFKILMESIKKKNNKA 1361
Query: 726 QGLKNMNIEQSRDQ-MEDDVEDDEGEG-AEGAGAALGRVDVSSDEERDEEDAVQSHKKVN 783
+N+N ++ + ++D E + G EG G + V ++ E + DA + +K
Sbjct: 1362 STFRNVNTRRATQRDLDDSGESERTRGDREGDDEEEGHI-VDAEAEEGDADASDAKRKEK 1420
Query: 784 Q 784
Q
Sbjct: 1421 Q 1421
Score = 172 bits (437), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 96/215 (44%), Positives = 128/215 (59%), Gaps = 34/215 (15%)
Query: 827 VKDVVNQHNIVHKYSYDKKNHMWC----KLLFLPSN------------------------ 858
V+ V H ++ Y YD + +WC KL + N
Sbjct: 1501 VRAVRECHPLIEDYQYDTEASLWCQVTVKLPLMKVNFDMSSLVVSLAQGTVVYATKGITR 1560
Query: 859 --LFEEKESKH----LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVI 912
L E SK+ +L T+GIN+ + +Y +LDL +LY NDIH MA+TYGIEAA RVI
Sbjct: 1561 CLLNETTNSKNEKELVLNTEGINLPELFKYAEVLDLRRLYSNDIHAMANTYGIEAALRVI 1620
Query: 913 IREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKI 972
+E+K+VFAVYGI VDPRHLSLVADYM G Y +NR GIR N S +Q+MTFE + +
Sbjct: 1621 EKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIRSNSSPLQQMTFETSFQFL 1680
Query: 973 RQASMQGREDSLRAPSARVMLGQECRQGTGLFQLR 1007
+QA+M G D LR+PSA +++G+ R GTGLF+L+
Sbjct: 1681 KQATMMGSHDELRSPSACLVVGKVVRGGTGLFELK 1715
>gi|74144282|dbj|BAE36009.1| unnamed protein product [Mus musculus]
Length = 1424
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/807 (45%), Positives = 499/807 (61%), Gaps = 67/807 (8%)
Query: 1 MDGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA S +AEA L QYLVPKDG PL+GLIQDH++SGA +++R F
Sbjct: 596 FDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFF 655
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL 116
TR +YM LVY+ L ++ PP I KP PLWTGKQV+ST++IN+ P+D +
Sbjct: 656 TREQYMELVYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDYAPLN---- 711
Query: 117 LSGILDKKQFGSTQYGL----------VHAVWDTHVTIRHGELLSGILDKKQFGSTQYGL 166
LSG + + GS + ++ ++ V IR GELL G+LDK +GS+ YGL
Sbjct: 712 LSG---EAKIGSKAWVKEKPRPIPDFDPDSMCESQVIIREGELLCGVLDKAHYGSSAYGL 768
Query: 167 VHAVWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARR 225
VH ++ +G E + +L+CLA+LFT YLQ GFTLGV DILV+ D R +II ++ +
Sbjct: 769 VHCCYEIYGGETSGRVLTCLARLFTAYLQLYRGFTLGVEDILVKPNADVVRQRIIEESTQ 828
Query: 226 LGTEAACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCL 284
G +A AL LP + I + Q+A+ S Q ID+++K ++ +N IN+ C+
Sbjct: 829 CGPQAVKAALSLPETASCDEIQGKWQDAHLSKDQRDFNMIDKKFKEEVNHYSNEINKACM 888
Query: 285 PEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPY 344
P GL FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PY
Sbjct: 889 PLGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPY 948
Query: 345 EVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTV 404
E +PRAGGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL +
Sbjct: 949 EFTPRAGGFVTGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVI 1008
Query: 405 HYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKK-- 462
YD+TVRDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I K + +L +
Sbjct: 1009 QYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLAGNYEVIMKSKHLHEVLSRAD 1068
Query: 463 ---------------HPLSLALLLLLTFKSSGKP--------NFIFSPH--RTKFTMDLL 497
H S ALL F S + N S R+ T +L
Sbjct: 1069 PQKVLGHIKAIKKWHHKHSGALLRKGAFLSFSQKIQAAVKALNLKGSIQNGRSPETQQML 1128
Query: 498 EQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK---GRTDAS 554
+ WY LD+++R KY+K+ CP P +S ++PD +F S+SE + +++ + + S
Sbjct: 1129 QMWYDLDEESRWKYQKRAAPCPDPSLSVWRPDIYFASVSETFEKKIDDFSQEWAAQAERS 1188
Query: 555 H------VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
+ +D+ ++ K SL +PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNV
Sbjct: 1189 YKKSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNV 1248
Query: 609 TLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIK 668
TLGIPRLREILM+A+ IKTP M +P D K KK L K +TR+ + +VL+KV I+
Sbjct: 1249 TLGIPRLREILMVASANIKTPMMSVPVF-DTKKALKKVKSLKKRLTRVCLGEVLQKVDIQ 1307
Query: 669 EWLEISPEPH--MNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKR--A 724
E + + + Y+++F F+P Y+ + ++P I+ E +F K L AI K+
Sbjct: 1308 ESFCMGEKRNKFQVYELRFQFLPHAYYQQEKCLRPEDILHFMETRFFKLLMEAIKKKKNK 1367
Query: 725 AQGLKNMNIEQSRDQMEDDVEDDEGEG 751
A +N+N SR + D+ D E G
Sbjct: 1368 ASAFRNVN---SRRATQKDLNDTEDSG 1391
>gi|26350055|dbj|BAC38667.1| unnamed protein product [Mus musculus]
Length = 1424
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/807 (46%), Positives = 498/807 (61%), Gaps = 67/807 (8%)
Query: 1 MDGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA S +AEA L QYLVPKDG PL+GLIQDH++SGA +++R F
Sbjct: 596 FDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFF 655
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL 116
TR +YM LVY+ L ++ PP I KP PLWTGKQV+ST++IN+ P+D +
Sbjct: 656 TREQYMELVYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDYAPLN---- 711
Query: 117 LSGILDKKQFGSTQYGL----------VHAVWDTHVTIRHGELLSGILDKKQFGSTQYGL 166
LSG K + GS + ++ ++ V IR GELL G+LDK +GS+ YGL
Sbjct: 712 LSG---KAKIGSKAWVKEKPRPIPDFDPDSMCESQVIIREGELLCGVLDKAHYGSSAYGL 768
Query: 167 VHAVWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARR 225
VH ++ +G E + +L+CLA+LFT YLQ GFTLGV DILV+ D R +II ++ +
Sbjct: 769 VHCCYEIYGGETSGRVLTCLARLFTAYLQLYRGFTLGVEDILVKPNADVVRQRIIEESTQ 828
Query: 226 LGTEAACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCL 284
G +A AL LP + I + Q+A+ S Q ID ++K ++ +N IN+ C+
Sbjct: 829 CGPQAVKAALSLPETASCDEIQGKWQDAHLSKDQRDFNMIDMKFKEEVNHYSNEINKACM 888
Query: 285 PEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPY 344
P GL FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PY
Sbjct: 889 PLGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPY 948
Query: 345 EVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTV 404
E +PRAGGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL +
Sbjct: 949 EFTPRAGGFVTGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVI 1008
Query: 405 HYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKK-- 462
YD+TVRDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I K + +L +
Sbjct: 1009 QYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLAGNYEVIMKSKHLHEVLSRAD 1068
Query: 463 ---------------HPLSLALLLLLTFKSSGKP--------NFIFSPH--RTKFTMDLL 497
H S ALL F S + N S R+ T +L
Sbjct: 1069 PQKVLGHIKAIKKWHHKHSGALLRKGAFLSFSQKIQAAVKALNLKGSIQNGRSPETQQML 1128
Query: 498 EQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK---GRTDAS 554
+ WY LD+++R KY+K+ CP P +S ++PD +F S+SE + +++ + + S
Sbjct: 1129 QMWYDLDEESRWKYQKRAAPCPDPSLSVWRPDIYFASVSETFEKKIDDFSQEWAAQAERS 1188
Query: 555 H------VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
+ +D+ ++ K SL +PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNV
Sbjct: 1189 YKKSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNV 1248
Query: 609 TLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIK 668
TLGIPRLREILM+A+ IKTP M +P D K KK L K +TR+ + +VL+KV I+
Sbjct: 1249 TLGIPRLREILMVASANIKTPMMSVPVF-DTKKALKKVKSLKKRLTRVCLGEVLQKVDIQ 1307
Query: 669 EWLEISPEPH--MNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKR--A 724
E + + + Y+++F F+P Y+ + ++P I+ E +F K L AI K+
Sbjct: 1308 ESFCMGEKRNKFQVYELRFQFLPHAYYQQEKCLRPEDILHFMETRFFKLLMEAIKKKKNK 1367
Query: 725 AQGLKNMNIEQSRDQMEDDVEDDEGEG 751
A +N+N SR + D+ D E G
Sbjct: 1368 ASAFRNVN---SRRATQKDLNDTEDSG 1391
>gi|332813686|ref|XP_001135380.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 isoform 3 [Pan
troglodytes]
Length = 1720
Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/802 (45%), Positives = 498/802 (62%), Gaps = 62/802 (7%)
Query: 2 DGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLT 57
DG NA S +AEA L QYLVPKDG PL+GLIQDH++SGA ++ R F T
Sbjct: 590 DGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFT 649
Query: 58 RAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELL 117
R +YM LVY+ L ++ L P+I KP LWTGKQV+ST++IN+ P+D + + L
Sbjct: 650 REQYMELVYRGLTDKVGRVKLLSPSILKPFALWTGKQVVSTLLINIIPEDHIPLN----L 705
Query: 118 SG---ILDKKQFGSTQYGLV----HAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAV 170
SG I K T + ++ ++ V IR GELL G+LDK +GS+ YGLVH
Sbjct: 706 SGKAKITGKAWVKETPQSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCC 765
Query: 171 WDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGTE 229
++ +G E + +L+CLA+LFT YLQ GFTLGV DILV+ + D KR +II ++ G +
Sbjct: 766 YEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGPQ 825
Query: 230 AACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCLPEGL 288
A AL LP + + + Q+A+ Q ID ++K ++ +N IN+ C+P GL
Sbjct: 826 AVRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGL 885
Query: 289 IEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSP 348
FP N+LQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PYE +P
Sbjct: 886 HRQFPENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTP 945
Query: 349 RAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDM 408
RAGGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V YD+
Sbjct: 946 RAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDL 1005
Query: 409 TVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLA 468
TVRDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I + + +L + A
Sbjct: 1006 TVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHLHEVLSRADPKKA 1065
Query: 469 LLLLLTFK--SSGKPNFIF-------------------------SPHRTKFTMDLLEQWY 501
L K S PN + R+ T ++L WY
Sbjct: 1066 LRHFRAVKKWQSKHPNTLLRRGAFLSYSQKIQEAVKALKLESENRNGRSPGTQEMLRMWY 1125
Query: 502 QLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK---GRTDASH--- 555
+LD+++R+KY+KK ACP P +S ++PD +F S+SE V Y++ +T+ S+
Sbjct: 1126 ELDEESRRKYQKKAAACPDPSLSVWRPDIYFASVSETFETKVDDYSQEWAAQTEKSYEKS 1185
Query: 556 ---VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGI 612
+D+ ++ K SL PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVTLGI
Sbjct: 1186 ELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGI 1245
Query: 613 PRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKE--W 670
PRLREILM+A+ IKTP M +P L + K K+ L K +TR+ + +VL+K+ ++E
Sbjct: 1246 PRLREILMVASANIKTPMMRVPVL-NTKKALKRVKSLKKQLTRVCLGEVLQKIDVQESFC 1304
Query: 671 LEISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKR--AAQGL 728
+E YQ++F F+P Y+ + ++P I+ E +F K L +I K+ A
Sbjct: 1305 MEEKQNKFQVYQLRFQFLPHAYYQQEKCLRPEDILHFMETRFFKLLMESIKKKNNKASTF 1364
Query: 729 KNMNIEQSRDQMEDDVEDDEGE 750
+N+N +R + D+ D+ GE
Sbjct: 1365 RNVN---TRRATQRDL-DNTGE 1382
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/215 (43%), Positives = 127/215 (59%), Gaps = 34/215 (15%)
Query: 827 VKDVVNQHNIVHKYSYDKKNHMWC---------KLLFLPSNLF----------------- 860
V+ V H + Y YD + +WC K+ F S+L
Sbjct: 1502 VQAVREIHPFIDDYQYDTEESLWCQVTVKLPLMKINFDMSSLVVSLAHGAVIYATKGITR 1561
Query: 861 --------EEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVI 912
+ E + +L T+GIN+ + +Y +LDL +LY NDIH MA+TYGIEAA RVI
Sbjct: 1562 CLLNETTNNKNEKELVLNTEGINLPELFKYAEVLDLRRLYSNDIHAMANTYGIEAALRVI 1621
Query: 913 IREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKI 972
+E+K+VFAVYGI VDPRHLSLVADYM G Y +NR GIR N S +Q+MTFE + +
Sbjct: 1622 EKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIRSNSSPLQQMTFETSFQFL 1681
Query: 973 RQASMQGREDSLRAPSARVMLGQECRQGTGLFQLR 1007
+QA+M G D LR+PSA +++G+ + GTGLF+L+
Sbjct: 1682 KQATMLGSHDELRSPSACLVVGKVVKGGTGLFELK 1716
>gi|384492991|gb|EIE83482.1| hypothetical protein RO3G_08187 [Rhizopus delemar RA 99-880]
Length = 1612
Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/1071 (38%), Positives = 588/1071 (54%), Gaps = 129/1071 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL--- 69
+AEA+ + N +QYLVP G PL GLIQD+V SG +S RDTF R EY L+Y +L
Sbjct: 586 RAEAALIANTDNQYLVPTSGDPLRGLIQDNVDSGVWMSSRDTFFNREEYHQLLYGSLRPE 645
Query: 70 --CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
+IRTLPPTI KP PLWTGKQV+ST+I NLT G+ + K +
Sbjct: 646 VDGTGGGKIRTLPPTILKPEPLWTGKQVISTIIKNLT--------WGKAQLNMTSKSKVA 697
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
+ +G +A + V I GEL+ G++DK QFG++ +GLVH++++ +G E A LLS L+
Sbjct: 698 AKFWG-PNAKDEEKVLIVDGELMHGVMDKSQFGASAFGLVHSIYEIYGPESAGMLLSILS 756
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLP---LDTDPE 244
+LF ++Q GFT + D+++ ++ D+ R +++ LG+EA LGL PE
Sbjct: 757 RLFIKFIQSHGFTCRMDDLILTKDGDKWRRDLLDNGVGLGSEAHLEFLGLAETAQTATPE 816
Query: 245 IISSQLQEAYASI---PQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMV 301
+++ + + + A +D K+ ++K+T++I Q CLP+GL+ PFP N++Q M
Sbjct: 817 VLAKEFKLRMNEVIRDDNKLAGLDNAMKAKVNKLTSSITQKCLPDGLVRPFPKNDMQMMT 876
Query: 302 ESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTG 361
SGAKGS VN QISCLLGQ ELEG+R +MVSGR+LPSF P++ S RAGGFV GRF+TG
Sbjct: 877 VSGAKGSNVNATQISCLLGQQELEGRRVPLMVSGRSLPSFRPFDTSARAGGFVTGRFLTG 936
Query: 362 IQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVL 421
I+PQE++FHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEGL VHYD TVRDSD S++Q
Sbjct: 937 IRPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLMKHLEGLRVHYDHTVRDSDGSVLQFH 996
Query: 422 YGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKP 481
YGED LDV K +++ QFSF N + + K HP A L L K
Sbjct: 997 YGEDSLDVIKAKHIN--QFSFSAHNFEALSQ--------KYHP--KAALASLEIK----- 1039
Query: 482 NFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLAD 541
Q ++ A+K +K K P +S + P H G +SE A
Sbjct: 1040 --------------------QGEEYAKKALKKPGKY--DPALSVYNPGTHLGVVSERFAL 1077
Query: 542 SVVKYTKGRTDASHVD------------------KFYDMIFYKNLLSLANPGENVGVLAA 583
++ +Y + DA + KF ++ K L SL PGE VG+LAA
Sbjct: 1078 AMKEYVEKNPDAMPFEKGSESSKNTARYAGLTKNKFKALMNLKYLHSLVEPGEAVGILAA 1137
Query: 584 QSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLE 643
QS+GEPSTQMTLNTFHFAG G NVTLGIPRLREI+M A + IKTP+M +P P+
Sbjct: 1138 QSVGEPSTQMTLNTFHFAGYGAANVTLGIPRLREIIMTAARKIKTPTMLLPLCPET--TL 1195
Query: 644 KKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMN-------YQMKFCFIPAHMYRDK 696
KKA++ KS +R+T+A +++ V +KE IS + N Y ++ Y ++
Sbjct: 1196 KKASQFCKSASRLTLAQLVDNVMVKE--RISAKSSENNYRRSKTYSIRVNLFDEKEYNEE 1253
Query: 697 TSVKPSKIIDHFERKFLKELEVAIAK--RAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEG 754
V ++ + FLK+LE I K + + +++++ D +D ED+ A G
Sbjct: 1254 YRVSAKRVKEVLATAFLKDLEELIRKDIKDTKKVEDISKGHKLDGPQDTNEDENLGDAAG 1313
Query: 755 AGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNTSNI--- 811
D + + A + E D D PE+ E+ E EE + I
Sbjct: 1314 KDGYASDDADDIDAKTARKSAENKPQASYDEPDEDDIIPEENEKSLEDEEAEFEQAILAG 1373
Query: 812 ---GERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC-----------KLLFLP- 856
+ K V + K+++D N +C K+L +
Sbjct: 1374 ADDDDEAPKRVSSKGGKIEKQAVEKSKYCTKFNFDDVNGAFCEIDMEFPADTKKILMVSL 1433
Query: 857 ----------------SNLFE-----EKESKHLLKTDGINVNFISQYRHLLDLNKLYVND 895
S FE E ++ L+T+G+N+ + + ++D+N + ND
Sbjct: 1434 IEKSCARVVVHEVKGISKCFEYINPTENDTSKRLQTEGVNLRGMWAFSDIIDVNYIDTND 1493
Query: 896 IHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRL 955
I + +TYG+EAA II+EV +VFAVYGI+VD RHL+L+ADYMT G Y +R GI
Sbjct: 1494 IAAILNTYGVEAARNAIIKEVASVFAVYGIKVDRRHLTLIADYMTFEGGYKPFSRIGIGS 1553
Query: 956 NPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
N + KM+FE + + +A++ G D+L +PS+R+++G+ GTG F +
Sbjct: 1554 NVAPFLKMSFESTCKFLTEATLHGDFDTLDSPSSRIVVGRVVEGGTGSFDV 1604
>gi|29165712|gb|AAH49190.1| Polr1a protein [Mus musculus]
Length = 1366
Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/777 (46%), Positives = 485/777 (62%), Gaps = 62/777 (7%)
Query: 1 MDGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA S +AEA L QYLVPKDG PL+GLIQDH++SGA +++R F
Sbjct: 596 FDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFF 655
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL 116
TR +YM LVY+ L ++ PP I KP PLWTGKQV+ST++IN+ P+D +
Sbjct: 656 TREQYMELVYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDYAPLN---- 711
Query: 117 LSGILDKKQFGSTQYGL----------VHAVWDTHVTIRHGELLSGILDKKQFGSTQYGL 166
LSG K + GS + ++ ++ V IR GELL G+LDK +GS+ YGL
Sbjct: 712 LSG---KAKIGSKAWVKEKPRPIPDFDPDSMCESQVIIREGELLCGVLDKAHYGSSAYGL 768
Query: 167 VHAVWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARR 225
VH ++ +G E + +L+CLA+LFT YLQ GFTLGV DILV+ D R +II ++ +
Sbjct: 769 VHCCYEIYGGETSGRVLTCLARLFTAYLQLYRGFTLGVEDILVKPNADVVRQRIIEESTQ 828
Query: 226 LGTEAACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCL 284
G +A AL LP + I + Q+A+ S Q ID ++K ++ +N IN+ C+
Sbjct: 829 CGPQAVKAALSLPETASCDEIQGKWQDAHLSKDQRDFNMIDMKFKEEVNHYSNEINKACM 888
Query: 285 PEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPY 344
P GL FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PY
Sbjct: 889 PLGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPY 948
Query: 345 EVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTV 404
E +PRAGGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL +
Sbjct: 949 EFTPRAGGFVTGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVI 1008
Query: 405 HYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKK-- 462
YD+TVRDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I K + +L +
Sbjct: 1009 QYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLAGNYEVIMKSKHLHEVLSRAD 1068
Query: 463 ---------------HPLSLALLLLLTFKSSGKP--------NFIFSPH--RTKFTMDLL 497
H S ALL F S + N S R+ T +L
Sbjct: 1069 PQKVLGHIKAIKKWHHKHSGALLRKGAFLSFSQKIQAAVKALNLKGSIQNGRSPETQQML 1128
Query: 498 EQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK---GRTDAS 554
+ WY LD+++R KY+K+ CP P +S ++PD +F S+SE + +++ + + S
Sbjct: 1129 QMWYDLDEESRWKYQKRAAPCPDPSLSVWRPDIYFASVSETFEKKIDDFSQEWAAQAERS 1188
Query: 555 H------VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
+ +D+ ++ K SL +PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNV
Sbjct: 1189 YKKSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNV 1248
Query: 609 TLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIK 668
TLGIPRLREILM+A+ IKTP M +P D K KK L K +TR+ + +VL+KV I+
Sbjct: 1249 TLGIPRLREILMVASANIKTPMMSVPVF-DTKKALKKVKSLKKRLTRVCLGEVLQKVDIQ 1307
Query: 669 EWLEISPEPH--MNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKR 723
E + + + Y+++F F+P Y+ + ++P I+ E +F K L AI K+
Sbjct: 1308 ESFCMGEKRNKFQVYELRFQFLPHAYYQQEKCLRPEDILHFMETRFFKLLMEAIKKK 1364
>gi|384501317|gb|EIE91808.1| hypothetical protein RO3G_16519 [Rhizopus delemar RA 99-880]
Length = 1668
Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/1083 (38%), Positives = 596/1083 (55%), Gaps = 152/1083 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL--- 69
+AEA+ + N +QYLVP G PL GLIQD+V SG +S RDTF R EY L+Y +L
Sbjct: 641 RAEAALIANTDNQYLVPTSGDPLRGLIQDNVDSGVWMSSRDTFFNREEYHQLLYGSLRPE 700
Query: 70 --CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
+IRTLPPTI KP PLWTGKQV+ST+I NLT G+ + K +
Sbjct: 701 VDGTGGGKIRTLPPTILKPEPLWTGKQVISTIIKNLT--------WGKAQLNMTSKSKVA 752
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
+ +G +A + V I GEL+ G++DK QFG++ +GLVH++++ +G E A LLS L+
Sbjct: 753 AKFWG-PNAKDEEKVLIVDGELMHGVMDKSQFGASAFGLVHSIYEIYGPESAGMLLSILS 811
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLP---LDTDPE 244
+LF ++Q GFT + D+++ ++ D+ R +++ LG+EA LGL PE
Sbjct: 812 RLFIKFIQSHGFTCRMDDLILTKDGDKWRRDLLDNGVGLGSEAHLEFLGLAETAQTATPE 871
Query: 245 IISSQLQEAYASI---PQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMV 301
+++ + + + A +D K+ ++K+T++I Q CLP+GL+ PFP N++Q M
Sbjct: 872 VLAKEFKLRMNEVIRDDNKLAGLDNAMKAKVNKLTSSITQKCLPDGLVRPFPKNDMQMMT 931
Query: 302 ESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTG 361
SGAKGS VN QISCLLGQ ELEG+R +MVSGR+LPSF P++ S RAGGFV GRF+TG
Sbjct: 932 VSGAKGSNVNATQISCLLGQQELEGRRVPLMVSGRSLPSFRPFDTSARAGGFVTGRFLTG 991
Query: 362 IQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVL 421
I+PQE++FHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEGL VHYD TVRDSD S++Q
Sbjct: 992 IRPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLMKHLEGLRVHYDHTVRDSDGSVLQFH 1051
Query: 422 YGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKP 481
YGED LDV K +++ QFSF N + + K HP A L L K
Sbjct: 1052 YGEDSLDVIKAKHIN--QFSFSAHNFESLSQ--------KYHP--KAALASLEIK----- 1094
Query: 482 NFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLAD 541
Q ++ A+K +K K P +S + P H G +SE A
Sbjct: 1095 --------------------QGEEYAKKALKKPGKY--DPALSVYNPGTHLGVVSERFAL 1132
Query: 542 SVVKYTKGRTDASHVD------------------KFYDMIFYKNLLSLANPGENVGVLAA 583
++ +Y + DA + KF ++ K L SL PGE VG+LAA
Sbjct: 1133 AMKEYVEKNPDAMPFEKGSESSKNTARYAGLTKNKFKALMNLKYLHSLVEPGEAVGILAA 1192
Query: 584 QSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLE 643
QS+GEPSTQMTLNTFHFAG G NVTLGIPRLREI+M A + IKTP+M +P +
Sbjct: 1193 QSVGEPSTQMTLNTFHFAGYGAANVTLGIPRLREIIMTAARKIKTPTMLLPLCAET--TP 1250
Query: 644 KKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMN-------YQMKFCFIPAHMYRDK 696
KKA + KS +R+T+A +++ V +KE +IS + N Y ++ Y ++
Sbjct: 1251 KKAAQFCKSASRLTLAQLVDNVIVKE--KISAKSSENNYRRSKTYSIRVNMFDEKEYNEE 1308
Query: 697 TSVKPSKIIDHFERKFLKELEVAIAK---------RAAQGLK-----------NMNIEQS 736
V ++ + FLK+LE I + ++G K NM +
Sbjct: 1309 YRVSAKRVKEVLATTFLKDLEELIRRDIKDTKKIEDISKGQKMDGPQDTNEDENMGDNTA 1368
Query: 737 RDQMEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDE 796
+ DD ED + + A + + +E D+ + ++K ++E+ +FE+
Sbjct: 1369 AGYVSDDAEDLDAKTARKSAENKPQASYDEPDEDDDVVPEEENEKSLEDEEAEFEQAILA 1428
Query: 797 ERMSEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC------ 850
+ + E TS+ G KIE K V + K+++D N +C
Sbjct: 1429 GAVDDEETPKRTSSKGG--KIE---------KQAVEKSKYCTKFNFDDANGAFCEIDMEF 1477
Query: 851 -----KLLFLP-----------------SNLFE-----EKESKHLLKTDGINVNFISQYR 883
K+L + S FE E ++ L+T+G+N+ + +
Sbjct: 1478 PADTKKILMVSLIEKSCARVVVHEVKGISKCFEYINPTENDTSKRLQTEGVNLRGMWAFS 1537
Query: 884 HLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSG 943
++D+N + NDI + +TYG+EAA +I+EV +VFAVYGI+VD RHL+L+ADYMT G
Sbjct: 1538 DIIDVNYIDTNDIAAILNTYGVEAARNAVIKEVGSVFAVYGIKVDRRHLTLIADYMTFEG 1597
Query: 944 TYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGL 1003
Y +R GI N S KM+FE + + +A++ G DSL +PS+R+++G+ GTG
Sbjct: 1598 GYKPFSRIGIGSNVSPFVKMSFESTCKFLTEATLHGDFDSLDSPSSRIVVGRVVEGGTGS 1657
Query: 1004 FQL 1006
F +
Sbjct: 1658 FDV 1660
>gi|116283856|gb|AAH34785.1| Polr1a protein [Mus musculus]
Length = 1366
Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/777 (46%), Positives = 484/777 (62%), Gaps = 62/777 (7%)
Query: 1 MDGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA S +AEA L QYLVPKDG PL+GLIQDH++SGA +++R F
Sbjct: 596 FDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFF 655
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL 116
TR +YM LVY+ L ++ PP I KP PLWTGKQV+ST++IN+ P+D +
Sbjct: 656 TREQYMELVYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDYAPLN---- 711
Query: 117 LSGILDKKQFGSTQYGL----------VHAVWDTHVTIRHGELLSGILDKKQFGSTQYGL 166
LSG K + GS + ++ ++ V IR GELL G+LDK +GS+ YGL
Sbjct: 712 LSG---KAKIGSKAWVKEKPRPIPDFDPDSMCESQVIIREGELLCGVLDKAHYGSSAYGL 768
Query: 167 VHAVWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARR 225
VH ++ +G E + +L+CLA+LFT YLQ GFTLGV DILV+ D R II ++ +
Sbjct: 769 VHCCYEIYGGETSGRVLTCLARLFTAYLQLYRGFTLGVEDILVKPNADVVRQHIIEESTQ 828
Query: 226 LGTEAACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCL 284
G +A AL LP + I + Q+A+ S Q ID ++K ++ +N IN+ C+
Sbjct: 829 CGPQAVKAALSLPETASCDEIQGKWQDAHLSKDQRDFNMIDMKFKEEVNHYSNEINKACM 888
Query: 285 PEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPY 344
P GL FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PY
Sbjct: 889 PLGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPY 948
Query: 345 EVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTV 404
E +PRAGGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL +
Sbjct: 949 EFTPRAGGFVTGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVI 1008
Query: 405 HYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKK-- 462
YD+TVRDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I K + +L +
Sbjct: 1009 QYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSKHLHEVLSRAD 1068
Query: 463 ---------------HPLSLALLLLLTFKSSGKP--------NFIFSPH--RTKFTMDLL 497
H S ALL F S + N S R+ T +L
Sbjct: 1069 PQKVLGHIKAIKKWHHKHSGALLRKGAFLSFSQKIQAAVKALNLKGSIQNGRSPETQQML 1128
Query: 498 EQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK---GRTDAS 554
+ WY LD+++R KY+K+ CP P +S ++PD +F S+SE + +++ + + S
Sbjct: 1129 QMWYDLDEESRWKYQKRAAPCPDPSLSVWRPDIYFASVSETFERKIDDFSQEWAAQAERS 1188
Query: 555 H------VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
+ +D+ ++ K SL +PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNV
Sbjct: 1189 YKKSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNV 1248
Query: 609 TLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIK 668
TLGIPRLREILM+A+ IKTP M +P D K KK L K +TR+ + +VL+KV I+
Sbjct: 1249 TLGIPRLREILMVASANIKTPMMSVPVF-DTKKALKKVKSLKKRLTRVCLGEVLQKVDIQ 1307
Query: 669 EWLEISPEPH--MNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKR 723
E + + + Y+++F F+P Y+ + ++P I+ E +F K L AI K+
Sbjct: 1308 ESFCMGEKRNKFQVYELRFQFLPHAYYQQEKCLRPEDILHFMETRFFKLLMEAIKKK 1364
>gi|116283365|gb|AAH10254.1| Polr1a protein [Mus musculus]
Length = 1366
Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/777 (46%), Positives = 484/777 (62%), Gaps = 62/777 (7%)
Query: 1 MDGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA S +AEA L QYLVPKDG PL+GLIQDH++SGA +++R F
Sbjct: 596 FDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFF 655
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL 116
TR +YM LVY+ L ++ PP I KP PLWTGKQV+ST++IN+ P+D +
Sbjct: 656 TREQYMELVYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDYAPLN---- 711
Query: 117 LSGILDKKQFGSTQYGL----------VHAVWDTHVTIRHGELLSGILDKKQFGSTQYGL 166
LSG K + GS + ++ ++ V IR GELL G+LDK +GS+ YGL
Sbjct: 712 LSG---KAKIGSKAWVKEKPRPIPDFDPDSMCESQVIIREGELLCGVLDKAHYGSSAYGL 768
Query: 167 VHAVWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARR 225
VH ++ +G E + +L+CLA+LFT YLQ GFTLGV DILV+ D R II ++ +
Sbjct: 769 VHCCYEIYGGETSGRVLTCLARLFTAYLQLYRGFTLGVEDILVKPNADVVRQHIIEESTQ 828
Query: 226 LGTEAACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCL 284
G +A AL LP + I + Q+A+ S Q ID ++K ++ +N IN+ C+
Sbjct: 829 CGPQAVKAALSLPETASCDEIQGKWQDAHLSKDQRDFNMIDMKFKEEVNHYSNEINKACM 888
Query: 285 PEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPY 344
P GL FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PY
Sbjct: 889 PLGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPY 948
Query: 345 EVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTV 404
E +PRAGGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL +
Sbjct: 949 EFTPRAGGFVTGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVI 1008
Query: 405 HYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKK-- 462
YD+TVRDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I K + +L +
Sbjct: 1009 QYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLAGNYEVIMKSKHLHEVLSRAD 1068
Query: 463 ---------------HPLSLALLLLLTFKSSGKP--------NFIFSPH--RTKFTMDLL 497
H S ALL F S + N S R+ T +L
Sbjct: 1069 PQKVLGHIKAIKKWHHKHSGALLRKGAFLSFSQKIQAAVKALNLKGSIQNGRSPETQQML 1128
Query: 498 EQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK---GRTDAS 554
+ WY LD+++R KY+K+ CP P +S ++PD +F S+SE + +++ + + S
Sbjct: 1129 QMWYDLDEESRWKYQKRAAPCPDPSLSVWRPDIYFASVSETFEKKIDDFSQEWAAQAERS 1188
Query: 555 H------VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
+ +D+ ++ K SL +PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNV
Sbjct: 1189 YKKSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNV 1248
Query: 609 TLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIK 668
TLGIPRLREILM+A+ IKTP M +P D K KK L K +TR+ + +VL+KV I+
Sbjct: 1249 TLGIPRLREILMVASANIKTPMMSVPVF-DTKKALKKVKSLKKRLTRVCLGEVLQKVDIQ 1307
Query: 669 EWLEISPEPH--MNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKR 723
E + + + Y+++F F+P Y+ + ++P I+ E +F K L AI K+
Sbjct: 1308 ESFCMGEKRNKFQVYELRFQFLPHAYYQQEKCLRPEDILHFMETRFFKLLMEAIKKK 1364
>gi|431899744|gb|ELK07695.1| DNA-directed RNA polymerase I subunit RPA1 [Pteropus alecto]
Length = 1706
Score = 658 bits (1698), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/837 (43%), Positives = 509/837 (60%), Gaps = 51/837 (6%)
Query: 2 DGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLT 57
DG NA S +AEAS L QYLVPKDG PL+GLIQDH++SGA ++ R F
Sbjct: 571 DGDEMNAHFPQSELGRAEASVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTTRGCFFN 630
Query: 58 RAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR-HGEL 116
R +YM LVY+ L ++ PP I KP PLWTGKQV+ST++IN+ P++ + + G+
Sbjct: 631 REQYMQLVYRGLTDKVGRVKFFPPAIRKPFPLWTGKQVVSTLLINIIPEEHIPLNLSGKA 690
Query: 117 -LSGILDKKQFGSTQYGL-VHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTH 174
+SG K+ G +++ ++ V IR GELL G+LDK +GS+ YGLVH ++ +
Sbjct: 691 KISGKAWVKESPRPVPGFNPNSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIY 750
Query: 175 GAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGTEAACN 233
G + + +L+CLA+LFT YLQ GFTLG+ DILV + D KR +II ++ G A
Sbjct: 751 GGQTSGKVLTCLARLFTAYLQLYRGFTLGMEDILVTPKADGKRHRIIGESTHCGPRAVRA 810
Query: 234 ALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCLPEGLIEPF 292
AL LP + + + Q+A+ Q ID ++K ++ +N IN+ C+P GL F
Sbjct: 811 ALNLPETASCDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQF 870
Query: 293 PANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGG 352
P NNLQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PYE +PRAGG
Sbjct: 871 PENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGG 930
Query: 353 FVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRD 412
FV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V YD+TVRD
Sbjct: 931 FVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRD 990
Query: 413 SDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLL 472
SD S++Q LYGEDGLD+ K Q+L KQF FL N + I K + +L + AL
Sbjct: 991 SDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSKHLHEVLSRADPQKALRHF 1050
Query: 473 LTFKSSG---------KPNFIFSPH------------------RTKFTMDLLEQWYQLDD 505
K K F+ R+ T +L W +LD+
Sbjct: 1051 RAIKKWQNKHSNTLLRKGAFLSYSQKVREAVKALNLQDANQHGRSPGTYQMLRMWGELDE 1110
Query: 506 KARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYT---KGRTDASH------V 556
++R+KY+KK CP P +S ++PD +F S+SE + Y+ + + S+ +
Sbjct: 1111 QSRRKYQKKAAPCPDPSLSVWRPDIYFASVSETFEKKMDDYSCEWASQAEKSYEKSELSL 1170
Query: 557 DKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLR 616
D+ ++ K SL +PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVTLGIPRLR
Sbjct: 1171 DRLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLR 1230
Query: 617 EILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPE 676
EILM+A+ IKTP M +P L + K K+ L + +TR+ + +VL+K+ ++E + +
Sbjct: 1231 EILMVASANIKTPMMSVPVL-NTKKALKRVKSLKRQLTRVCLGEVLQKIDVQESFCMGEK 1289
Query: 677 PHMN--YQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKR--AAQGLKNMN 732
+ + YQ++F F+P Y+ + +KP I+ E +F K L +I K+ A +++N
Sbjct: 1290 QNKSRMYQLRFHFLPHAYYQQEKCLKPKDILHFMETRFFKILMESIRKKNSKASAFRSVN 1349
Query: 733 IEQSRDQMEDDVEDDEGEGAEGAGAALGRVD-VSSDEERDEEDAVQSHKKVNQEEDN 788
++ + D+ + E E G V ++ E + DA +K QEE++
Sbjct: 1350 TRRATQRDLDNAGESERNQGEQEGDEEEEGHIVDAEAEEGDADASDIKRKEKQEEES 1406
Score = 83.6 bits (205), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 72/154 (46%), Gaps = 36/154 (23%)
Query: 827 VKDVVNQHNIVHKYSYDKKNHMWCKL---------------------------------- 852
V+ V H + Y YD + +WC++
Sbjct: 1543 VQAVCESHPFIEDYQYDSEESLWCQVTVKLPLMKVNFDMSSLVVSLAHSTVIYATKGITR 1602
Query: 853 LFLPSNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVI 912
L + E + +L T+GIN+ + +Y +LDL +LY NDIH MASTYGIEAA RVI
Sbjct: 1603 CLLNETTTNKNEKELILNTEGINLPELFKYAEVLDLRRLYSNDIHAMASTYGIEAALRVI 1662
Query: 913 IREVKNVFAVYGIEVDPRHLS--LVADYMTHSGT 944
+E+K+VFAVYG + R S LV + GT
Sbjct: 1663 EKEIKDVFAVYGSHDELRSPSACLVVGKVVKGGT 1696
>gi|312068462|ref|XP_003137225.1| hypothetical protein LOAG_01639 [Loa loa]
Length = 1707
Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/1106 (37%), Positives = 597/1106 (53%), Gaps = 154/1106 (13%)
Query: 1 MDGWTQNASHFLK-----AEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTF 55
DG N HF++ E + ++NV S +LVPKDG+PL GLIQDHV+SG L++R F
Sbjct: 642 FDGDEMNG-HFVQNRIAQTELAEIVNVGSNFLVPKDGTPLLGLIQDHVVSGVLLTIRGRF 700
Query: 56 LTRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGE 115
+ ++M+LV A + PPT+ KP LW+GKQ++STV+ N P K ++
Sbjct: 701 FNKEDFMHLVLSAFAETTQRLVIPPPTMLKPQVLWSGKQIISTVLRNCIPLHKPLL---- 756
Query: 116 LLSGILDKKQFGSTQYGL------VHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHA 169
I K + + + + ++ ++ V R ELL G+LDK+ +GSTQYGL+H
Sbjct: 757 ---NIRSKAKTPLSCWKVEDHPAPKFSMSESEVIFRQAELLVGVLDKQHYGSTQYGLIHC 813
Query: 170 VWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTE 229
WD +G +A +LSC ++LFT +LQ GFTLGV DIL+R+E D++R K I R+ G
Sbjct: 814 CWDLYGHRYATRILSCFSRLFTTHLQYHGFTLGVADILIRKEADKQRKKEIKALRKCGDT 873
Query: 230 AACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLI 289
L + D I++ C+P GLI
Sbjct: 874 VVRECFNLDENADESEINA----------------------------------CMPAGLI 899
Query: 290 EPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPR 349
+ FP N LQ M+ GAKG+ VN++QISC LGQIELEG RP M +GRTLPSF ++ SPR
Sbjct: 900 KLFPQNALQLMILCGAKGTMVNSVQISCELGQIELEGHRPPMTSAGRTLPSFRSFDTSPR 959
Query: 350 AGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMT 409
AGGFVD RF+TGI PQE FFH MAGREGLIDTAVKTSRSGYLQRC+VKHLEGL YD T
Sbjct: 960 AGGFVDQRFLTGINPQELFFHTMAGREGLIDTAVKTSRSGYLQRCIVKHLEGLVAQYDST 1019
Query: 410 VRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWI--CSYKVILNL----LKKH 463
VRD D S+IQ YGEDG+DV K ++ +QF FL DN++ + C V N LKK
Sbjct: 1020 VRDHDGSIIQFRYGEDGMDVCKSTFMNSEQFDFLADNMQVLRSCILPVDYNEDQWDLKKC 1079
Query: 464 PLSLALLLLLTFKSSGKPNFIFSPHRTKFTMD--------LLEQWYQLDDKARKKYRKKF 515
+ + K I++ +F+ + + + W++L D R +Y K
Sbjct: 1080 EKAYKKIKKWRRKYGLNERKIYTSGYVEFSKEYRGTPKEKIQKMWFELTDGERYEYHSKA 1139
Query: 516 -KACPQPLISTFQPDAHFGSISENLADSVVKYT--KGRTDAS-HVDKFYDMIFYKNLLSL 571
KACP + P+ G++ + L D + +Y K T A +D F +++K +
Sbjct: 1140 GKACPAAVDEKMNPNRCLGALPQKLLDDIDEYIGMKSVTGADISLDTFRKSLYWKGMRCR 1199
Query: 572 ANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSM 631
+PGENVG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVTLGIPRLREILM A+ IKTPS
Sbjct: 1200 VDPGENVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMTASNDIKTPSA 1259
Query: 632 EIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCF-IPA 690
EI P ++ + + + RI + ++++K I E + + + C+ +
Sbjct: 1260 EIHIKPGTS--SERIEAIKRELGRIYLKELIKKFTIDERVNLDEKESWR-----CYDLHI 1312
Query: 691 HMYRDKTSVKPSKIIDHF-ERKFLKELEV----AIAKRAAQGLKNMNIEQSRD------- 738
+ R K + SK I H R+ L E+E AI KR + + M Q+
Sbjct: 1313 ELLRTK---ERSKCIRHISRRRILAEVECRFAKAIGKRISDRCREMTDYQALQHKKLKLR 1369
Query: 739 --------------QMEDDVEDDEGEG------AEGAGAALGRVDVSS--DEERDEEDAV 776
+ +D++ DE G AEG+ +D ++ + E DE+ V
Sbjct: 1370 NLTIGIGEETPKPKKQDDELSSDEEVGGGIDLDAEGSRILKRHLDDAAEYEGEEDEQRVV 1429
Query: 777 QSHKKVNQE--EDNDFEEPEDEERMSEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQH 834
+KV E + E E+ E +ER+ED N S R + + +++ +++V+
Sbjct: 1430 LPQQKVEDTFMEISTESEEENTETTAERDEDVNDSYNAGRLRSQEAETSR--IQNVIASS 1487
Query: 835 NIVHKYSYDKKNHMWCKLLF---------LPSNLFEEKESKH------------------ 867
++ Y +D K++ WC ++F L E+E ++
Sbjct: 1488 PLIRDYKFDVKSNRWCTIIFQLPLSTKTKLDVGALVERELENFLVWETPGIEKCIIRCEN 1547
Query: 868 -------LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 920
+L T GINV + ++ +LD+N LY ND++ + S YGIEA R +++E+ VF
Sbjct: 1548 RGDDRYQILATQGINVQALMKHSDVLDVNTLYSNDLNMICSNYGIEACGRALVKEIIRVF 1607
Query: 921 AVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGR 980
YGI+++ RHL+L ADYMT +G +R + L+ S +Q+MTFE + +R A + G
Sbjct: 1608 TPYGIDINWRHLTLAADYMTFTGRIQPFSRGAMSLSTSPLQRMTFETTVAFMRDALINGD 1667
Query: 981 EDSLRAPSARVMLGQECRQGTGLFQL 1006
+D L +PS+R+++G R GTG+F +
Sbjct: 1668 DDYLMSPSSRLVVGGLLRGGTGIFDV 1693
>gi|74145323|dbj|BAE36122.1| unnamed protein product [Mus musculus]
Length = 1361
Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/770 (46%), Positives = 481/770 (62%), Gaps = 62/770 (8%)
Query: 1 MDGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA S +AEA L QYLVPKDG PL+GLIQDH++SGA +++R F
Sbjct: 596 FDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFF 655
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL 116
TR +YM LVY+ L ++ PP I KP PLWTGKQV+ST++IN+ P+D +
Sbjct: 656 TREQYMELVYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDYAPLN---- 711
Query: 117 LSGILDKKQFGSTQYGL----------VHAVWDTHVTIRHGELLSGILDKKQFGSTQYGL 166
LSG K + GS + ++ ++ V IR GELL G+LDK +GS+ YGL
Sbjct: 712 LSG---KAKIGSKAWVKEKPRPIPDFDPDSMCESQVIIREGELLCGVLDKAHYGSSAYGL 768
Query: 167 VHAVWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARR 225
VH ++ +G E + +L+CLA+LFT YLQ GFTLGV DILV+ D R +II ++ +
Sbjct: 769 VHCCYEIYGGETSGRVLTCLARLFTAYLQLYRGFTLGVEDILVKPNADVVRQRIIEESTQ 828
Query: 226 LGTEAACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCL 284
G +A AL LP + I + Q+A+ S Q ID ++K ++ +N IN+ C+
Sbjct: 829 CGPQAVKAALSLPETASCDEIQGKWQDAHLSKDQRDFNMIDMKFKEEVNHYSNEINKACM 888
Query: 285 PEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPY 344
P GL FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PY
Sbjct: 889 PLGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPY 948
Query: 345 EVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTV 404
E +PRAGGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL +
Sbjct: 949 EFTPRAGGFVTGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVI 1008
Query: 405 HYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKK-- 462
YD+TVRDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I K + +L +
Sbjct: 1009 QYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLAGNYEVIMKSKHLHEVLSRAD 1068
Query: 463 ---------------HPLSLALLLLLTFKSSGKP--------NFIFSPH--RTKFTMDLL 497
H S ALL F S + N S R+ T +L
Sbjct: 1069 PQKVLGHIKAIKKWHHKHSGALLRKGAFLSFSQKIQAAVKALNLKGSIQNGRSPETQQML 1128
Query: 498 EQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK---GRTDAS 554
+ WY LD+++R KY+K+ CP P +S ++PD +F S+SE + +++ + + S
Sbjct: 1129 QMWYDLDEESRWKYQKRAAPCPDPSLSVWRPDIYFASVSETFEKKIDDFSQEWAAQAERS 1188
Query: 555 H------VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
+ +D+ ++ K SL +PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNV
Sbjct: 1189 YKKSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNV 1248
Query: 609 TLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIK 668
TLGIPRLREILM+A+ IKTP M +P D K KK L K +TR+ + +VL+KV I+
Sbjct: 1249 TLGIPRLREILMVASANIKTPMMSVPVF-DTKKALKKVKSLKKRLTRVCLGEVLQKVDIQ 1307
Query: 669 EWLEISPEPH--MNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKEL 716
E + + + Y+++F F+P Y+ + ++P I+ E +F K L
Sbjct: 1308 ESFCMGEKRNKFQVYELRFQFLPHAYYQQEKCLRPEDILHFMETRFFKLL 1357
>gi|328771968|gb|EGF82007.1| hypothetical protein BATDEDRAFT_18926 [Batrachochytrium dendrobatidis
JAM81]
Length = 1709
Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/1103 (37%), Positives = 587/1103 (53%), Gaps = 173/1103 (15%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALC-- 70
+AEA + QYLVP DG L GLIQDHV +G + RDTF R YM LVY LC
Sbjct: 661 RAEAMLIARNDQQYLVPTDGGVLRGLIQDHVDAGVDMCSRDTFFNRETYMQLVYIGLCPE 720
Query: 71 -IL--NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
I+ N + TLPP I KP+ WTGKQ++ST+++NL P+D+ ++ ++ K +
Sbjct: 721 GIIGRNGRVVTLPPAIIKPVAKWTGKQIISTILVNLIPEDRNLL-------NLVSKSRIP 773
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
+ Q+G A + V G+LL+GILDK QFG++ GLVHAV++ +GA +A LLS L
Sbjct: 774 AKQWG-PSAPEEQTVIFMDGDLLTGILDKSQFGASANGLVHAVYEVYGASYAGKLLSILG 832
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIIS 247
+LFT YLQ GFT + D+ + E D R ++I A +G +A G D ++
Sbjct: 833 RLFTSYLQFAGFTCRMDDLRLTPEGDAVRCELIESASSIGLDAISEITG----GDKTALA 888
Query: 248 SQLQEAYASIPQFR-----AQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
++ A R A +D KS +KVT+ I C+P+ L++PFP NN+Q M
Sbjct: 889 KNIELNVALEQVLRNSEKMAALDSAMKSRTNKVTSKIISSCVPDRLLKPFPHNNMQVMTV 948
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
SGAKGS VN QISCLLGQ ELEGKR M+SG+TLPSFL Y+ S RAGG++ GRF+TGI
Sbjct: 949 SGAKGSGVNVSQISCLLGQQELEGKRVPTMISGKTLPSFLAYDTSARAGGYITGRFLTGI 1008
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
+PQE++FHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEGL+VHYD TVRD D SL+Q Y
Sbjct: 1009 KPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSVHYDHTVRDMDGSLLQFQY 1068
Query: 423 GEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKH-PLSLALLLLLTFKSSGKP 481
GED LDV K+ L ++F F N + LLK++ P +LA
Sbjct: 1069 GEDALDVVKQTTL--QKFDFCALNYRA---------LLKRYDPSALA------------- 1104
Query: 482 NFIFSPHRTKFTMDLLEQWYQLDDKARKKYRK-------KFKACPQPLISTFQPDAHFGS 534
K + LE++ + K RK+ R+ FK P++S F P H GS
Sbjct: 1105 --------GKVDDESLERYLK---KQRKQDRESIRESGGSFKPNHDPILSIFSPSRHIGS 1153
Query: 535 ISENLADSVVKYT-----------------KGRTDAS---------------HVDKFYDM 562
+S+ AD++ Y K RTD + KF +
Sbjct: 1154 VSDGFADALSAYIEKNTSQLLYTSSSKKTHKNRTDENGEARPVKDTWSVPKISARKFKVL 1213
Query: 563 IFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMA 622
+ + + SL PGE VG+LAAQSIGEPSTQMTLNTFHFAG G NVTLGIPRLREI+M A
Sbjct: 1214 MELRYMHSLVEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGFGAKNVTLGIPRLREIIMTA 1273
Query: 623 TKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQ 682
+++I+TP M +P + +A+++A ++R+ ++ ++ V + E L + P +
Sbjct: 1274 SQSIQTPLMRLPLKQE--ATVDQAHQIADQISRVVLSQIMHGVTVSETL-VPKTPERQKR 1330
Query: 683 MK-FC----FIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSR 737
+K FC P + + + I + E+KF+ L+ I + N
Sbjct: 1331 VKQFCVRLELWPQEACQRQYGITDEDIGNIIEKKFVPILDRTIMRMLKVKFTGDNASTEA 1390
Query: 738 DQMEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEE 797
D+ + + D+ E VS D+ ++ AV+ + K Q+ D + ED+E
Sbjct: 1391 DEGQTLAKGDDSE-------------VSDDDGDNDATAVRQNTKRQQQATYDGPD-EDDE 1436
Query: 798 RMSEREEDDNTSNIGERFKI-------------------EFRDSTNVFVKDVVNQH--NI 836
++ E D +N ++ + E TN + V Q
Sbjct: 1437 QVIEHLADIEMANDDDKVSVNTDPDSVNDADDGLDLDGFETEKHTNGINRSVRIQRASRF 1496
Query: 837 VHKYSYDKKNHMWC-----------KLLFLP------SNLF----------------EEK 863
V Y + K + +C K+L LP SNL E
Sbjct: 1497 VSGYKFHKGSLRYCELTYELSTDTKKILMLPLVEEVCSNLIVRQVPGVSRCYYLPNESEN 1556
Query: 864 ESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
+ + TDG+N+ I +Y +++D+NK+ NDI + TYG+EAA I++E+ VF VY
Sbjct: 1557 DKSVNVGTDGVNLKGIWEYDNVIDVNKIGTNDIAAILHTYGVEAARAAIMQEIAGVFGVY 1616
Query: 924 GIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDS 983
GI+VD RHLS++ADYMT G Y A NR + NPS +M+FE + A++ G D
Sbjct: 1617 GIQVDSRHLSIIADYMTFEGGYKAFNRTCMGSNPSPFLQMSFETTTSFLTTATLTGDSDP 1676
Query: 984 LRAPSARVMLGQECRQGTGLFQL 1006
L +PSAR+++GQ + GTG F +
Sbjct: 1677 LDSPSARIVMGQAVKTGTGSFSV 1699
>gi|260798706|ref|XP_002594341.1| hypothetical protein BRAFLDRAFT_201044 [Branchiostoma floridae]
gi|229279574|gb|EEN50352.1| hypothetical protein BRAFLDRAFT_201044 [Branchiostoma floridae]
Length = 1731
Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/802 (44%), Positives = 484/802 (60%), Gaps = 70/802 (8%)
Query: 2 DGWTQNASHFL-----KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA HF +AEA + + QYL PKDG PLSGLIQDH++SG ++LR F
Sbjct: 599 DGDEMNA-HFPQNELGRAEAYAIASTDQQYLGPKDGKPLSGLIQDHMVSGVTMTLRGRFF 657
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR---- 112
R EY LV+ AL +R LPP+I KP LW+GKQV+STV++N+ P+ K +
Sbjct: 658 AREEYHQLVFSALTDKQGHVRLLPPSIVKPRILWSGKQVVSTVLLNIIPEGKAPLNMDSK 717
Query: 113 ---HGELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHA 169
G+L + + + + ++ V IR G+LL GILDK +G T YGLVH
Sbjct: 718 AKISGKLWTTAPSRASRSGVRPLRDGEMCESQVIIRQGQLLCGILDKGHYGPTPYGLVHC 777
Query: 170 VWDTHGAEHAISLLSCLAKLFTVYLQ-RVGFTLGVRDILVRQERDRKRTKIINKARRLGT 228
+ +G + + LL+CL +LFT +LQ +GFTLGV DIL+ Q+ D KR +I+ A G
Sbjct: 778 CSELYGGKVSSRLLTCLGRLFTTFLQNHLGFTLGVEDILLTQKADVKRREIMTAAAHCGD 837
Query: 229 EAACNALGLPLDTDPEIISSQLQEA-----YASIPQFRAQIDRQYKSLLDKVTNNINQVC 283
+AA ALG+ D +I + L+EA ++ Q + D KS D+ +N+IN+ C
Sbjct: 838 DAAARALGM--DISVKIETDTLKEALQTAHFSPDDQDMKEWDMAMKSKTDQFSNDINKAC 895
Query: 284 LPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLP 343
P GL++ FP NNLQ MV+SGAKGS+VN MQIS LLGQIELEG+RP +M SG +LPSFLP
Sbjct: 896 TPNGLLKMFPHNNLQLMVQSGAKGSSVNCMQISSLLGQIELEGRRPPLMPSGSSLPSFLP 955
Query: 344 YEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLT 403
Y+ SPRAGGFVDGRF+TGI+PQE+FFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL
Sbjct: 956 YDTSPRAGGFVDGRFLTGIRPQEYFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLV 1015
Query: 404 VHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVI------- 456
++YD+TVRDSD SLIQ YGEDGLD+ K Q+L K + F+ +N + + + +
Sbjct: 1016 INYDLTVRDSDGSLIQFYYGEDGLDIPKTQFLGPKHYPFMVNNHRAVVQQEQLRQVQDRV 1075
Query: 457 ---------------------LNLLKKHPLSLALLLL----LTFKSSGKPNFIFSPHRTK 491
LL A L L P R K
Sbjct: 1076 DTTAAAAWQRKVNKWKKKQKKKGLLNSRERRSAFLRYCQEELPSLRQDNPGLDSDTGRLK 1135
Query: 492 FTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGR- 550
+ ++ W +++ R+KYRK+ K CP P ++ +PD H GS SE +D + +Y
Sbjct: 1136 SALAAVDLWKDMEEDDREKYRKQSKKCPDPTLAKLRPDRHLGSTSELYSDILNEYVATNP 1195
Query: 551 ------------TDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTF 598
+D +D+F+ M+ YK + SL PGE VG+LAAQSIGEPSTQMTLNTF
Sbjct: 1196 MGLPSEEEVSDGSDEMTIDRFHAMMQYKYMRSLVEPGEAVGLLAAQSIGEPSTQMTLNTF 1255
Query: 599 HFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITM 658
HFAGRG+MNVTLGIPRLREILM+A+ IKTP+ME+P + D P+ A + + T++ +
Sbjct: 1256 HFAGRGEMNVTLGIPRLREILMVASANIKTPTMEVPLV-DSPEARTAAENIRRRFTQVHL 1314
Query: 659 ADVLEKVKIKE--WLEISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKEL 716
VLE V++ E ++E E H Y ++F F+P Y + P+KI+ ERKF + L
Sbjct: 1315 FQVLESVEVSETLFVESRLERHRTYTVRFQFLPPDTYEKDVYLSPAKILHFMERKFFRRL 1374
Query: 717 EVAIAKRAAQGLKNMNIEQSRD 738
A+ KR A+ ++ N + R+
Sbjct: 1375 LEAL-KRQAKEMQEHNSREKRN 1395
>gi|19113092|ref|NP_596300.1| DNA-directed RNA polymerase I complex large subunit Nuc1
[Schizosaccharomyces pombe 972h-]
gi|3334489|sp|P15398.2|RPA1_SCHPO RecName: Full=DNA-directed RNA polymerase I subunit rpa1; AltName:
Full=DNA-directed RNA polymerase I 190 kDa polypeptide;
AltName: Full=DNA-directed RNA polymerase I largest
subunit
gi|173433|gb|AAA35326.1| RNA polymerase I largest subunit [Schizosaccharomyces pombe]
gi|2832886|emb|CAA16827.1| DNA-directed RNA polymerase I complex large subunit Nuc1
[Schizosaccharomyces pombe]
Length = 1689
Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/1084 (37%), Positives = 594/1084 (54%), Gaps = 154/1084 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
++EA F+ N SQYLVP G PL GLIQDHV+ G L+ +DTF TR EY L++QAL
Sbjct: 660 RSEAQFIANTDSQYLVPTSGDPLRGLIQDHVVMGVWLTCKDTFYTRDEYQQLLFQALKPD 719
Query: 73 NT----EIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGS 128
T I+TLPP I +P WTGKQ++S+V++NL P D+ + L K
Sbjct: 720 ETGMYGRIKTLPPAIQRPGIYWTGKQIISSVLLNLKPSDRPGLN--------LKSKAKVP 771
Query: 129 TQYGLVHAVW-----DTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLL 183
+Y W + V GELL GILDK FG++ +GLVH+V + +G + A LL
Sbjct: 772 GKY------WSPDSEEGSVLFDDGELLCGILDKSSFGASAFGLVHSVHELYGPDIAGRLL 825
Query: 184 SCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDP 243
S L++LFT Y Q GFT + D+ + ++ D R +++ + G EAA +GL D+
Sbjct: 826 SVLSRLFTAYAQMRGFTCRMDDLRLDEQGDNWRRQLLENGKSFGLEAASEYVGLSTDSPI 885
Query: 244 EIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVES 303
++++ L+E Y + + +D K ++ +T++I C+P+GL+ FP N++Q M S
Sbjct: 886 ALLNANLEEVYRDDEKLQG-LDAAMKGKMNGLTSSIINKCIPDGLLTKFPYNHMQTMTVS 944
Query: 304 GAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQ 363
GAKGS VN QISCLLGQ ELEG+R +MVSG++LPSF+PYE S ++GGF+ RF+TGI
Sbjct: 945 GAKGSNVNVSQISCLLGQQELEGRRVPLMVSGKSLPSFVPYETSAKSGGFIASRFLTGIA 1004
Query: 364 PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYG 423
PQE++FHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEGL V YD TVRDSD S++Q YG
Sbjct: 1005 PQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLMKHLEGLCVQYDHTVRDSDGSIVQFHYG 1064
Query: 424 EDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNF 483
ED LDVTK+++LT QF F N K +L++K+ + L +
Sbjct: 1065 EDSLDVTKQKHLT--QFEFSAKNYK---------SLIQKYKVKSVL------------SA 1101
Query: 484 IFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSV 543
+ S + + L++ Y+ D P++ + P + GS+SE +V
Sbjct: 1102 VDSETASSYAKKALKKPYKYD----------------PVLDKYPPSRYLGSVSEKFQRAV 1145
Query: 544 VKYTKGRTDA-------SHVD-------KFYDMIFYKNLLSLANPGENVGVLAAQSIGEP 589
+YT+ D S +D KF ++ + SL +PGE+VGVLA+QSIGEP
Sbjct: 1146 DEYTQKNPDKLIASKKESKLDDSLLNESKFKALMQLRYQQSLVDPGESVGVLASQSIGEP 1205
Query: 590 STQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRL 649
STQMTLNTFHFAG G NVTLGIPRLREI+M A+ I+TP+M + + +K+A+
Sbjct: 1206 STQMTLNTFHFAGFGAKNVTLGIPRLREIIMTASANIQTPTMTLRLNDGVS--DKRASAF 1263
Query: 650 AKSMTRITMADVLEKVKIKEWL--EISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDH 707
K + ++ +++V+ +V++ E + + S E Y ++ Y+D+ V +I
Sbjct: 1264 CKEVNKLVLSEVVRQVRVTEKISGQGSDEQSKTYAIRLDLYSRDEYQDEYGVLQEEIEST 1323
Query: 708 FERKFLKELE------VAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGR 761
F +FLK L +A +K+ G K+ + + ++ + DE A AL
Sbjct: 1324 FSNRFLKILNRIIKSYLAKSKQRKSGGKDDTVPEVGQALKPLEDIDEAPIEGRAQEALED 1383
Query: 762 VDVSSDEER--------------DEED--AVQSHKKVNQEEDNDFEEPEDE-----ERMS 800
D + E+ DE D A++ K N+ ED + +E EDE E +S
Sbjct: 1384 EDNDATNEKMVSRSKQHASYEGPDEADKVALRQLKGSNKVEDVNMDEEEDEGFKSDESVS 1443
Query: 801 ---ERE--EDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKL-LF 854
ER+ E NT +I ER +++ + + + N H +D N W + L
Sbjct: 1444 DFKERKLLEKQNTVSISERRELQLKTAKEIL-------SNCKH-LDFDYVNGEWATVELV 1495
Query: 855 LPSN--------LFEEKESKHLLK------------------------TDGINVNFISQY 882
P N L E+ S+ ++ T+G+N+ I ++
Sbjct: 1496 FPINTEKLLMVSLVEKACSETVIHEIPGITRCFSKPPDSALDTVPKVITEGVNLKAIWEF 1555
Query: 883 RHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHS 942
+ + +N +Y NDI + YG+EAA I+ EV +VF VYGI VDPRHLSL+ADYMT
Sbjct: 1556 YNEISMNDIYTNDIAAILRIYGVEAARNAIVHEVSSVFGVYGIAVDPRHLSLIADYMTFE 1615
Query: 943 GTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTG 1002
G Y A NR GI N S KM+FE + +A+++G D L PS+R+++G+ GTG
Sbjct: 1616 GGYKAFNRMGIEYNTSPFAKMSFETTCHFLTEAALRGDVDDLSNPSSRLVVGRVGNFGTG 1675
Query: 1003 LFQL 1006
F +
Sbjct: 1676 SFDI 1679
>gi|316997011|dbj|BAJ52633.1| RNA polymerase I largest subunit [Ephydatia fluviatilis]
Length = 1194
Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/792 (45%), Positives = 498/792 (62%), Gaps = 81/792 (10%)
Query: 1 MDGWTQNASHF-----LKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTF 55
DG NA HF ++EA +++ +QYLVPKDG+PLSGLIQDHV++G +++R
Sbjct: 46 FDGDEMNA-HFPQNELARSEAYNIVSTHNQYLVPKDGTPLSGLIQDHVVAGVLMTIRGRM 104
Query: 56 LTRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR--- 112
+RA+YMNLV+ A+ L ++ +TLPP I KP LW+GKQV+ST+++N+TP D+ +
Sbjct: 105 FSRADYMNLVFSAIPSLRSQYKTLPPCILKPEKLWSGKQVVSTLLLNITPDDQYKLNLVS 164
Query: 113 ----------HGELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGST 162
G + S KK+ + QY + ++ V R GELLSG+LDK QFG++
Sbjct: 165 KTKIAPKEWSRGAVKSSASKKKKKKAVQYH-DDIMTESEVIFREGELLSGVLDKSQFGAS 223
Query: 163 QYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINK 222
Q+G VH +++ + E LLS L +LFT +LQ GF+LG+ DILV+ E D +R K I +
Sbjct: 224 QFGFVHCIYELYNGEVCNLLLSALGRLFTSFLQLHGFSLGLEDILVKPEADLERKKAIAE 283
Query: 223 ARRLGTEAACNALGLPLDTDPEIISSQLQEAYASIPQFR-----AQIDRQYKSLLDKVTN 277
AR G AA G T P+ ++ Q++E Y + R +D K D+ N
Sbjct: 284 ARSCGAAAAAECFG----TSPDDLA-QIREKYEAAHHSRDNTALKTLDFVMKKKTDQYNN 338
Query: 278 NINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRT 337
IN VC+P+GL +PFP N+LQ MV+SG+KGSTVN MQIS LLGQ+ELEG+RP +M SG+
Sbjct: 339 IINGVCVPDGLYKPFPHNSLQLMVQSGSKGSTVNCMQISALLGQMELEGQRPPLMPSGQF 398
Query: 338 LPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVK 397
LPSF PY++SPRAGGFVD RF+TG++PQE+FFHCMAGREGL+DTAVKTSRSGYLQRCL+K
Sbjct: 399 LPSFRPYDISPRAGGFVDERFLTGVRPQEYFFHCMAGREGLVDTAVKTSRSGYLQRCLIK 458
Query: 398 HLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIK--------- 448
H+EG+ V+YD+TVR SD S+IQ LYGEDGLD+ K ++L++KQF FL DN K
Sbjct: 459 HMEGVIVNYDLTVRGSDGSVIQFLYGEDGLDIGKTRFLSEKQFPFLLDNYKALLHKLDPS 518
Query: 449 --------------------WICSYKVILNLLKKHPLSLALLLLLT-------FKSSGKP 481
W+ + +L P A L + ++SGK
Sbjct: 519 AASTVLESTRASKYLKKLDHWVAKHGG--EILHGRPRRSAFLHFYSKHLPEVELQASGKS 576
Query: 482 NFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLAD 541
S RT+ + ++E WY L +++ RKK P P+ ++ + D FGS E L +
Sbjct: 577 QQADS-WRTEAQLKIIEAWYGLSPMSKESLRKKCLTRPDPVNASLRQDRFFGSAPEALME 635
Query: 542 SVVKYTKGRTDASH---------VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQ 592
+ + + H DKF ++ K L +LA+PGE VG+LAAQSIGEPSTQ
Sbjct: 636 KLKSFIEKNPSKLHNIEGDCKVSGDKFTSLVQLKCLRALADPGEAVGLLAAQSIGEPSTQ 695
Query: 593 MTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKS 652
MTLNTFHFAGRG+MNVTLGIPRLREILM A+ IKTP+M++P LP P ++ +L K
Sbjct: 696 MTLNTFHFAGRGEMNVTLGIPRLREILMTASANIKTPAMDVPLLP-RPDAREQGEKLKKF 754
Query: 653 MTRITMADVLEKVKIKEWLEISPEPHMN--YQMKFCFIPAHMYRDKTSVKPSKIIDHFER 710
TR+ +++VLEK+++ E LE + H++ Y+++F F+P Y ++ S+KPS I+ + ER
Sbjct: 755 FTRVCLSEVLEKLEVWESLEREGKGHVHQQYRLRFSFLPQECYYERFSLKPSHILHYVER 814
Query: 711 KFLKELEVAIAK 722
F+K+L AI K
Sbjct: 815 TFIKKLVAAIKK 826
Score = 159 bits (403), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 96/265 (36%), Positives = 143/265 (53%), Gaps = 41/265 (15%)
Query: 776 VQSHKKVNQEEDNDFEEPEDEERMSEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHN 835
VQ +++ + D+D E ED + E +E G ++ V++V+ ++
Sbjct: 932 VQCNEQTKKVVDSDEEPIEDSTALDESQE-------GTPDMVKTVSMNQDRVQEVLLNNS 984
Query: 836 IVHKYSYDKKNHMWCKL-LFLPS--------NLFEEKESKHL------------------ 868
+V Y+YD + WC++ L PS ++ E+ K +
Sbjct: 985 VVSNYTYDAECERWCEMTLKFPSVDSKIIVTSIVEKLAPKCVVWEVPGIRKGYLMESTDP 1044
Query: 869 -------LKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 921
LKTDGIN+ + QY ++LDL KLY N IH MA YGIEAA ++II+E+ VF
Sbjct: 1045 GEKGLLRLKTDGINLQVLWQYANILDLRKLYTNHIHAMAKIYGIEAAVKIIIKEISGVFR 1104
Query: 922 VYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGRE 981
VYGI+VD RHLSL+ADYMT G Y NR G+ N S QKM+FE + ++ A++ G
Sbjct: 1105 VYGIDVDYRHLSLIADYMTFEGAYKPFNRMGMEGNSSPFQKMSFETTMHFLKSATLNGDV 1164
Query: 982 DSLRAPSARVMLGQECRQGTGLFQL 1006
D+L +PSAR++ G+ + GTG F+L
Sbjct: 1165 DTLASPSARIVAGRVVQGGTGCFEL 1189
>gi|183985780|gb|AAI66364.1| LOC100158635 protein [Xenopus (Silurana) tropicalis]
Length = 1424
Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/800 (45%), Positives = 495/800 (61%), Gaps = 49/800 (6%)
Query: 1 MDGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA S +AEA L QYLVPKDG+PL+GLIQDH++SGA +++R F
Sbjct: 592 FDGDEMNAHFPQSELGRAEAYSLACTDEQYLVPKDGTPLAGLIQDHMVSGANMTIRGCFF 651
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKV---IIRH 113
TR +YM LVYQ L ++ LPP I KP PLWTGKQV+ST++IN+ P++ + +
Sbjct: 652 TREQYMELVYQGLTDKRGRVKVLPPAILKPYPLWTGKQVVSTLLINVIPENLIPLNLTGK 711
Query: 114 GELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDT 173
++ K+Q ++ ++ V IR GELL G+LDK +GS+ +GLVH ++
Sbjct: 712 AKISGKAWVKEQPRPIPGFSPDSMCESQVIIRDGELLCGVLDKAHYGSSSFGLVHCCYEL 771
Query: 174 HGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGTEAAC 232
+G E + LL+CLA+LFT YLQ GFTLGV DILV D +R I+ ++ G +A
Sbjct: 772 YGGETSGKLLTCLARLFTAYLQLYRGFTLGVEDILVLPYADAQRLNIVQQSLHCGGKAIR 831
Query: 233 NALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCLPEGLIEP 291
A L E + Q+A+ S Q +D ++K +++ N IN+VC+P GL P
Sbjct: 832 AAFNLSEAASDEEAHGKWQDAHLSKDQRDFNMVDLKFKEEVNQFNNEINKVCMPFGLHRP 891
Query: 292 FPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAG 351
FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SGR+LP F PY+ SPR+G
Sbjct: 892 FPENNLQLMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMPSGRSLPCFQPYDFSPRSG 951
Query: 352 GFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVR 411
GFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V YD+TVR
Sbjct: 952 GFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVR 1011
Query: 412 DSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKK--------- 462
DSD S+IQ LYGEDGLDV K Q+L KQF F+ +N + I K + +L +
Sbjct: 1012 DSDGSVIQFLYGEDGLDVPKTQFLQPKQFPFIAENYEVIKQSKHLDEVLSRVNTEQAEQH 1071
Query: 463 ----------HP-LS--LALLLLLTFKS-----SGKPNFIFSPHRTKFTMDLLEQWYQLD 504
HP LS ++ LL + K + PN + R + +LE WY +
Sbjct: 1072 NHAIYRWKARHPNLSQRISPFLLYSQKQMAAAKASCPNELDENGRDLASRKVLESWYAAN 1131
Query: 505 DKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYT---KGRTDASH------ 555
+K R KY ++ P P ++ ++PD + GS+SEN + +Y + + D+S
Sbjct: 1132 EKTRSKYVRRSSTLPDPCLAVWRPDLYLGSVSENFQSKMAQYGCLWEEQRDSSQGMSSLT 1191
Query: 556 VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRL 615
D ++ K +L +PG+ VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVTLGIPRL
Sbjct: 1192 FDSLKTLLHLKWQRALCDPGDAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRL 1251
Query: 616 REILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEIS- 674
REILM+A+ IKTP M +P L + K KK +L K +TR+ +A+V+ K+ ++E I
Sbjct: 1252 REILMVASANIKTPMMSVPVL-NTKKAVKKVKQLKKKLTRVCLAEVIHKLDVEETFRIEE 1310
Query: 675 -PEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNI 733
+ + Y+++F F+P YR + ++P ++ E +F K + AI KR + L +
Sbjct: 1311 KSQKYQVYKIRFHFLPHEYYRQEKLLRPEGVLRFMETRFFKIMFDAI-KRKSSKLASFRE 1369
Query: 734 EQSRDQMEDDVEDDEGEGAE 753
+R + D D E +G +
Sbjct: 1370 VGTRRATQKDHGDGEDQGNQ 1389
>gi|4995|emb|CAA32887.1| unnamed protein product [Schizosaccharomyces pombe]
Length = 1689
Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/1086 (37%), Positives = 593/1086 (54%), Gaps = 154/1086 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
++EA F+ N SQYLVP G PL GLIQDHV+ G L+ +DTF R EY L++QAL
Sbjct: 660 RSEAQFIANTDSQYLVPTSGDPLRGLIQDHVVMGVWLTCKDTFYIRDEYQQLLFQALKPD 719
Query: 73 NT----EIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGS 128
T I+TLPP I +P WTGKQ++S+V++NL P D+ + L K
Sbjct: 720 ETGMYGRIKTLPPAIQRPGIYWTGKQIISSVLLNLKPSDRPGLN--------LKSKAKVP 771
Query: 129 TQYGLVHAVW-----DTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLL 183
+Y W + V GELL GILDK FG++ +GLVH+V + +G + A LL
Sbjct: 772 GKY------WSPDSEEGSVLFDDGELLCGILDKSSFGASAFGLVHSVHELYGPDIAGRLL 825
Query: 184 SCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDP 243
S L++LFT Y Q GFT + D+ + ++ D R +++ + G EAA +GL D+
Sbjct: 826 SVLSRLFTAYAQMRGFTCRMDDLRLDEQGDNWRRQLLENGKSFGLEAASEYVGLSTDSPI 885
Query: 244 EIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVES 303
++++ L+E Y + + +D K ++ +T++I C+P+GL+ FP N++Q M S
Sbjct: 886 ALLNANLEEVYRDDEKLQG-LDAAMKGKMNGLTSSIINKCIPDGLLTKFPYNHMQTMTVS 944
Query: 304 GAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQ 363
GAKGS VN QISCLLGQ ELEG+R +MVSG++LPSF+PYE S ++GGF+ RF+TGI
Sbjct: 945 GAKGSNVNVSQISCLLGQQELEGRRVPLMVSGKSLPSFVPYETSAKSGGFIASRFLTGIA 1004
Query: 364 PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYG 423
PQE++FHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEGL V YD TVRDSD S++Q YG
Sbjct: 1005 PQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLMKHLEGLCVQYDHTVRDSDGSIVQFHYG 1064
Query: 424 EDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNF 483
ED LDVTK+++LT QF F N K +L++K+ + L +
Sbjct: 1065 EDSLDVTKQKHLT--QFEFSAKNYK---------SLIQKYKVKSVL------------SA 1101
Query: 484 IFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSV 543
+ S + + L++ Y+ D P++ + P + GS+SE +V
Sbjct: 1102 VDSETASSYAKKALKKPYKYD----------------PVLDKYPPSRYLGSVSEKFQRAV 1145
Query: 544 VKYTKGRTDA-------SHVD-------KFYDMIFYKNLLSLANPGENVGVLAAQSIGEP 589
+YT+ D S +D KF ++ + SL +PGE+VGVLA+QSIGEP
Sbjct: 1146 DEYTQKNPDKLIASKKESKLDDSLLNESKFKALMQLRYQQSLVDPGESVGVLASQSIGEP 1205
Query: 590 STQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRL 649
STQMTLNTFHFAG G NVTLGIPRLREI+M A+ I+TP+M + + +K+A+
Sbjct: 1206 STQMTLNTFHFAGFGAKNVTLGIPRLREIIMTASANIQTPTMTLRLNDGVS--DKRASAF 1263
Query: 650 AKSMTRITMADVLEKVKIKEWL--EISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDH 707
K + ++ +++V+ +V++ E + + S E Y ++ Y+D+ V +I
Sbjct: 1264 CKEVNKLVLSEVVRQVRVTEKISGQGSDEQSKTYAIRLDLYSRDEYQDEYGVLQEEIEST 1323
Query: 708 FERKFLKELE------VAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGR 761
F +FLK L +A +K+ G K+ + + ++ + DE A AL
Sbjct: 1324 FSNRFLKILNRIIKSYLAKSKQRKSGGKDDTVPEVGQALKPLEDIDEAPIEGRAQEALED 1383
Query: 762 VDVSSDEER--------------DEED--AVQSHKKVNQEEDNDFEEPEDE-----ERMS 800
D + E+ DE D A++ K N+ ED + +E EDE E +S
Sbjct: 1384 EDNDATNEKMVSRSKQHASYEGPDEADKVALRQLKGSNKVEDVNMDEEEDEGFKSDESVS 1443
Query: 801 ---ERE--EDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKL-LF 854
ER+ E NT +I ER +++ + + + N H +D N W + L
Sbjct: 1444 DFKERKLLEKQNTVSISERRELQLKTAKEIL-------SNCKH-LDFDYVNGEWATVELV 1495
Query: 855 LPSN--------LFEEKESKHLLK------------------------TDGINVNFISQY 882
P N L E+ S+ ++ T+G+N+ I ++
Sbjct: 1496 FPINTEKLLMVSLVEKACSETVIHEIPGITRCFSKPPDSALDTVPKVITEGVNLKAIWEF 1555
Query: 883 RHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHS 942
+ + +N +Y NDI + YG+EA I+ EV +VF VYGI VDPRHLSL+ADYMT
Sbjct: 1556 YNEISMNDIYTNDIAAILRIYGVEATRNAIVHEVSSVFGVYGIAVDPRHLSLIADYMTFE 1615
Query: 943 GTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTG 1002
G Y A NR GI N S KM+FE + +A+++G D L PS+R+++G+ GTG
Sbjct: 1616 GGYKAFNRMGIEYNTSPFAKMSFETTCHFLTEAALRGDVDDLSNPSSRLVVGRVGNFGTG 1675
Query: 1003 LFQLRN 1008
F + N
Sbjct: 1676 SFDIFN 1681
>gi|367017944|ref|XP_003683470.1| hypothetical protein TDEL_0H04000 [Torulaspora delbrueckii]
gi|359751134|emb|CCE94259.1| hypothetical protein TDEL_0H04000 [Torulaspora delbrueckii]
Length = 1665
Score = 644 bits (1660), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/1076 (37%), Positives = 589/1076 (54%), Gaps = 144/1076 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA L N SQYL P GSP+ GLIQDH+ +G L+ +D+F TR EY +Y CI
Sbjct: 643 RAEAFNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREEYQQYIYG--CIR 700
Query: 73 -------NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQ 125
+I T+PP + KP+PLWTGKQ++STV++N+TP D I L S K +
Sbjct: 701 PEHGHASRGKIVTMPPAVLKPVPLWTGKQIISTVLLNVTPADMPGIN---LESNNKIKNE 757
Query: 126 F---GSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISL 182
+ GST+ V ++GEL+ GILDK Q+G+++YG+VH++ + +G E A +
Sbjct: 758 YWGKGSTE---------NDVIFKNGELVCGILDKSQYGASKYGIVHSLHEVYGPEVAAKV 808
Query: 183 LSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDT- 241
LS L +LFT Y+ FT G+ D+ + E ++ R++I+ + +G +AA L DT
Sbjct: 809 LSVLGRLFTNYITATAFTCGMDDLRLTAEGNKSRSEILKTSIDIGRQAAAEVTNLDKDTP 868
Query: 242 --DPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQF 299
D E++ +L+E + +D S ++ VT+ + C+P+G ++ FP N++Q
Sbjct: 869 SDDVELLK-RLEEILRDENK-SGILDAVTSSKVNTVTSKVVSTCVPDGTMKKFPYNSMQA 926
Query: 300 MVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFM 359
M SGAKGS VN QI CLLGQ LEG+R +MVSG+TLPSF P+E AGG++ GRF
Sbjct: 927 MALSGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPFETDSMAGGYIKGRFY 986
Query: 360 TGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQ 419
+GI+PQE++FHCMAGREGLIDTAVKTSRSGYLQRCL K LEG+ + YD +VRD D SLIQ
Sbjct: 987 SGIKPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHISYDNSVRDGDGSLIQ 1046
Query: 420 VLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSG 479
LYG D +DVTK ++T QF F +N Y +L K +P++LA L
Sbjct: 1047 FLYGGDAVDVTKESHMT--QFDFCREN------YDALLK--KYNPVALAEHL-------- 1088
Query: 480 KPNFIFSPHRTKFTMDLLEQWYQLDDKARKK------YRKKFKACPQPLISTFQPDAHFG 533
++ Q+ + K RKK Y +K K P+++ + P + G
Sbjct: 1089 -------------DVETALQYSKKVSKNRKKNSKTAHYEQKVKY--DPVLAKYNPAKYLG 1133
Query: 534 SISENLADSVVKYTKGRT------DASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIG 587
S+SE D + Y + + ++ +F ++ K + SL NPGE VG++A+QS+G
Sbjct: 1134 SVSEKFHDKLESYLEDKAKEFKSRESVSAKRFRALMQLKYMRSLINPGEAVGIIASQSVG 1193
Query: 588 EPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKAN 647
EPSTQMTLNTFHFAG G NVTLGIPR+REI+M A+ AIKTP M +P D+ +++A+
Sbjct: 1194 EPSTQMTLNTFHFAGHGAANVTLGIPRMREIIMTASSAIKTPQMTLPIWDDVS--DEQAD 1251
Query: 648 RLAKSMTRITMADVLEKVKIKEWLEISP--EPHMNYQMKFCFIPAHMYRDKTSVKPSKII 705
KS++++ +++V++KV + E S P +Y + F Y ++ V ++
Sbjct: 1252 LFCKSISKVVLSEVVDKVTVIETTGSSDGNAPSRSYAINMKFFSKEEYNEQYDVSAEELQ 1311
Query: 706 DHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRVDVS 765
+ KFL +LE AI K + K E V +E AA G VD +
Sbjct: 1312 NVISNKFLTQLETAILKEVKKQKKTSLPEVGVAVPTSHVALNE--------AAEGSVDKA 1363
Query: 766 SDEERDEEDAVQSHKKVNQEEDNDFEEPE---------DEERM----------SEREEDD 806
+ ++ DEE+A + K+ ED D EE E DEE + +E + D
Sbjct: 1364 T-QDNDEEEARKKGKQAVSYEDPDDEELETMRQAEKSSDEEELDSDKETKDSDAESDSDV 1422
Query: 807 NTSNIGERFKIEFRDSTNVFVKD----VVNQHNIVHKYSYDKKNHMWC-----------K 851
+ ER +E + N +D V ++ V KY++D +N WC K
Sbjct: 1423 EMDDAIERTAVEITKNLNKSQRDRQHAVTSKQRFVTKYNFDDENGKWCEFRLELAADTEK 1482
Query: 852 LLFLPSNLFEE--KES-------------------KHLLKTDGINVNFISQYRHLLDLNK 890
LL + N+ EE K+S K +L T+G+N + +D++
Sbjct: 1483 LLMV--NIVEEICKKSVIREVPHIDRCVHSEPVNNKRMLVTEGVNFQAMWDQEAFIDVDA 1540
Query: 891 LYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNR 950
+ ND+ + TYG+EAA I+ E+ NVF+ Y I V RHL L+AD MT GTY+A NR
Sbjct: 1541 ITSNDVASVLRTYGVEAARNTIVNEINNVFSRYAISVSFRHLDLIADMMTRQGTYLAFNR 1600
Query: 951 NGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
G+ + S + KM++E + + +A + + L +PSAR++LG+ GTG F L
Sbjct: 1601 QGMETSTSSLMKMSYETTCQFLTKAVLDNEREELESPSARIVLGKLSNVGTGSFDL 1656
>gi|62988890|gb|AAY24277.1| unknown [Homo sapiens]
Length = 922
Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/931 (41%), Positives = 529/931 (56%), Gaps = 139/931 (14%)
Query: 203 VRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQEAYASIPQFR- 261
V DILV+ + D KR +II ++ G +A AL LP + + + Q+A+ Q
Sbjct: 1 VEDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYDEVRGKWQDAHLGKDQRDF 60
Query: 262 AQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQ 321
ID ++K ++ +N IN+ C+P GL FP N+LQ MV+SGAKGSTVNTMQISCLLGQ
Sbjct: 61 NMIDLKFKEEVNHYSNEINKACMPFGLHRQFPENSLQMMVQSGAKGSTVNTMQISCLLGQ 120
Query: 322 IELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDT 381
IELEG+RP +M SG++LP F PYE +PRAGGFV GRF+TGI+P EFFFHCMAGREGL+DT
Sbjct: 121 IELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDT 180
Query: 382 AVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFS 441
AVKTSRSGYLQRC++KHLEGL V YD+TVRDSD S++Q LYGEDGLD+ K Q+L KQF
Sbjct: 181 AVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFP 240
Query: 442 FLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFK--SSGKPNFIF-------------- 485
FL N + I + + +L + AL K S PN +
Sbjct: 241 FLASNYEVIMKSQHLHEVLSRADPKKALHHFRAIKKWQSKHPNTLLRRGAFLSYSQKIQE 300
Query: 486 -----------SPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGS 534
R+ T ++L WY+LD+++R+KY+KK ACP P +S ++PD +F S
Sbjct: 301 AVKALKLESENRNGRSPGTQEMLRMWYELDEESRRKYQKKAAACPDPSLSVWRPDIYFAS 360
Query: 535 ISENLADSVVKYTK---GRTDASH------VDKFYDMIFYKNLLSLANPGENVGVLAAQS 585
+SE V Y++ +T+ S+ +D+ ++ K SL PGE VG+LAAQS
Sbjct: 361 VSETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQS 420
Query: 586 IGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKK 645
IGEPSTQMTLNTFHFAGRG+MNVTLGIPRLREILM+A+ IKTP M +P L + K K+
Sbjct: 421 IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVL-NTKKALKR 479
Query: 646 ANRLAKSMTRITMADVLEKVKIKE--WLEISPEPHMNYQMKFCFIPAHMYRDKTSVKPSK 703
L K +TR+ + +VL+K+ ++E +E YQ++F F+P Y+ + ++P
Sbjct: 480 VKSLKKQLTRVCLGEVLQKIDVQESFCMEEKQNKFQVYQLRFQFLPHAYYQQEKCLRPED 539
Query: 704 IIDHFERKFLKELEVAIAKR--AAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGR 761
I+ E +F K L +I K+ A +N+N +R + D+ D+ GE LGR
Sbjct: 540 ILRFMETRFFKLLMESIKKKNNKASAFRNVN---TRRATQRDL-DNAGE--------LGR 587
Query: 762 ---------------VDVSSDE-ERDEEDAVQSHKKVN---------------------- 783
VD ++E + D DA + K+
Sbjct: 588 SRGEQEGDEEEEGHIVDAEAEEGDADASDAKRKEKQEEEVDYESEEEEEREGEENDDEDM 647
Query: 784 QEEDNDFEE------PEDEERMSEREEDDNTSNIGERFK-------IEFRDSTNVFVKDV 830
QEE N E +DEE EED + + + + + ++ V+ V
Sbjct: 648 QEERNPHREGARKTQEQDEEVGLGTEEDPSLPALLTQPRKPTHSQEPQGPEAMERRVQAV 707
Query: 831 VNQHNIVHKYSYDKKNHMWC---------KLLFLPSNLF--------------------- 860
H + Y YD + +WC K+ F S+L
Sbjct: 708 REIHPFIDDYQYDTEESLWCQVTVKLPLMKINFDMSSLVVSLAHGAVIYATKGITRCLLN 767
Query: 861 ----EEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREV 916
+ E + +L T+GIN+ + +Y +LDL +LY NDIH +A+TYGIEAA RVI +E+
Sbjct: 768 ETTNNKNEKELVLNTEGINLPELFKYAEVLDLRRLYSNDIHAIANTYGIEAALRVIEKEI 827
Query: 917 KNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQAS 976
K+VFAVYGI VDPRHLSLVADYM G Y +NR GIR N S +Q+MTFE + ++QA+
Sbjct: 828 KDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIRSNSSPLQQMTFETSFQFLKQAT 887
Query: 977 MQGREDSLRAPSARVMLGQECRQGTGLFQLR 1007
M G D LR+PSA +++G+ R GTGLF+L+
Sbjct: 888 MLGSHDELRSPSACLVVGKVVRGGTGLFELK 918
>gi|366994298|ref|XP_003676913.1| hypothetical protein NCAS_0F00730 [Naumovozyma castellii CBS 4309]
gi|342302781|emb|CCC70557.1| hypothetical protein NCAS_0F00730 [Naumovozyma castellii CBS 4309]
Length = 1674
Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/1071 (37%), Positives = 586/1071 (54%), Gaps = 135/1071 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCI- 71
+AEAS L N SQYL P GSP+ GLIQDH+ +G L+ +D+F TR +Y +Y CI
Sbjct: 652 RAEASNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQYQQYIYG--CIR 709
Query: 72 ------LNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQ 125
+++ T+PPTI KP+PLWTGKQ++STV++N+TP + I L S K +
Sbjct: 710 PEDGHATRSKLITMPPTIHKPVPLWTGKQIISTVLLNITPANMPGIN---LKSSNKIKNE 766
Query: 126 FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSC 185
+ T + V ++GELL GILDK Q+G++++G+VH++ + +G A +LS
Sbjct: 767 YWGT------GSQENEVLFKNGELLCGILDKSQYGASKFGIVHSLHEVYGPSVAAKVLSV 820
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDT---D 242
L +LFT Y+ FT G+ D+ + +E ++ R+ I+ + G EAA L DT D
Sbjct: 821 LGRLFTNYIMSTAFTCGMDDLRLTEEGNKWRSDILKTSVDTGREAAAEVTNLDKDTPAND 880
Query: 243 PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
PE++ +LQE + +D S ++ +T+ + C+P+G ++ FP N++Q M
Sbjct: 881 PELLK-RLQEILRDNNK-SGILDAVTSSKVNSITSKVVSKCVPDGTMKKFPYNSMQAMAL 938
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
SGAKGS VN QI CLLGQ LEG+R +MVSG+TLPSF PYE AGG+V GRF +GI
Sbjct: 939 SGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPYETDAMAGGYVKGRFYSGI 998
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
+PQE++FHCMAGREGLIDTAVKTSRSGYLQRCL K LEG+ + YD +VRD+D +LIQ LY
Sbjct: 999 KPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGIHISYDNSVRDTDGTLIQFLY 1058
Query: 423 GEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPN 482
G D +DVTK ++T +F F DN Y +LN K +P AL+ L +S+ K
Sbjct: 1059 GGDAVDVTKESHMT--EFDFCLDN------YDALLN--KYNP--SALIEHLDVESALK-- 1104
Query: 483 FIFSPHRTKFTMDLLEQWYQLDDKARKK------YRKKFKACPQPLISTFQPDAHFGSIS 536
+ + K RKK Y++ K P++S F P + GS+S
Sbjct: 1105 -----------------YSKKSLKNRKKHIKEPHYKQNIKY--DPVLSKFNPAKYLGSVS 1145
Query: 537 ENLADSVVKYTKGRT------DASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPS 590
E D + Y + D+ + KF ++ K + SL NPGE VG++A+QS+GEPS
Sbjct: 1146 EKFQDKLEGYLDKNSKLFKSHDSVNEKKFRALMQLKYMRSLINPGEAVGIIASQSVGEPS 1205
Query: 591 TQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLA 650
TQMTLNTFHFAG G NVTLGIPR+REI+M A+ AIKTP M +P D+ +++A+
Sbjct: 1206 TQMTLNTFHFAGHGAANVTLGIPRMREIIMTASAAIKTPQMTLPIWNDVS--DEQADTFC 1263
Query: 651 KSMTRITMADVLEKVKIKEWLEISPE--PHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHF 708
KS++++ +++V++KV + E S +Y + F YR + V ++
Sbjct: 1264 KSISKVVLSEVIDKVTVTETTGSSMHNVAARSYVINMKFFDEEEYRAEYDVSKQELQTVV 1323
Query: 709 ERKFLKELEVAIAKRAAQ----GLKNMNIEQSRDQMEDDVED----------DEGEGAEG 754
KFL ELE AI K + + ++ I + Q V D DE E +
Sbjct: 1324 ATKFLYELETAITKEVKKQKRTAVSDVGIAVPKSQTAISVTDGSSKKMAEDGDEEEYQKK 1383
Query: 755 AGAALGRVDVSSDE-------ERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDN 807
A+ D DE E+ +E+ V S K + E +++ E+ D E ++ EE
Sbjct: 1384 TKQAVSYEDPDDDEIETMREAEKSDEEIVDSDK--DSEVESEQEDDSDVEMDAKLEETIA 1441
Query: 808 TSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC-----------KLLFLP 856
+N+ R S ++ H V KY++D +N WC KLL +
Sbjct: 1442 EANMNMTKTQRDRQSA------LITNHKFVTKYNFDDENGKWCEFRLELAADTEKLLMV- 1494
Query: 857 SNLFEE---------------------KESKHLLKTDGINVNFISQYRHLLDLNKLYVND 895
N+ E+ + K +L T+G+N + +D++ + ND
Sbjct: 1495 -NIIEDICRKSIIREVPHIDRCIHPEPENGKRVLVTEGVNFEAMWDQEAFIDVDGITSND 1553
Query: 896 IHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRL 955
+ + TYG+EAA I+ E+ NVF+ Y I V RHL L+AD MT GTY+A NR G+
Sbjct: 1554 VASVLKTYGVEAARNTIVNEINNVFSRYAISVSFRHLDLIADMMTRQGTYLAFNRQGMES 1613
Query: 956 NPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+ S + KM++E L+ + +A + + L +PSAR+++G+ GTG F +
Sbjct: 1614 STSSLMKMSYETTLQFLTKAVLDNEREELESPSARIVMGKLNNVGTGSFDI 1664
>gi|448106653|ref|XP_004200803.1| Piso0_003410 [Millerozyma farinosa CBS 7064]
gi|448109741|ref|XP_004201434.1| Piso0_003410 [Millerozyma farinosa CBS 7064]
gi|359382225|emb|CCE81062.1| Piso0_003410 [Millerozyma farinosa CBS 7064]
gi|359382990|emb|CCE80297.1| Piso0_003410 [Millerozyma farinosa CBS 7064]
Length = 1639
Score = 640 bits (1650), Expect = e-180, Method: Compositional matrix adjust.
Identities = 394/1086 (36%), Positives = 584/1086 (53%), Gaps = 161/1086 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA L N SQYL P GSPL GLIQDH+ +G L+ +DTF TR EY L+Y CI
Sbjct: 615 KAEALNLANTDSQYLTPTSGSPLRGLIQDHISAGLWLTNKDTFFTREEYQQLIYG--CIR 672
Query: 73 -------NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQ 125
+ +I+T+PPTI+KP+PLWTGKQV+ST+++N+ P++ + ++ K +
Sbjct: 673 PEDGHTSSAKIQTMPPTIFKPVPLWTGKQVISTILLNIKPRNVPGV-------NLISKNK 725
Query: 126 FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSC 185
+ +G + + V R+GELL GILDK Q+G++++G++H++ + +G + A LS
Sbjct: 726 VKNEYWGKYSS--ENEVIFRNGELLCGILDKSQYGASKFGIIHSLHEVYGPDIAGKALSV 783
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDT---D 242
L +LFT Y+ + FT G+ D+ + E D R I+ ++R +G AA L T D
Sbjct: 784 LGRLFTNYIMKTAFTCGMDDLRLTSEGDSWRRDILKESRDIGRVAATEVTNLDKSTPNND 843
Query: 243 PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
E + +L+E + A +D +S ++ +T+ + +P G ++ FP N++Q M
Sbjct: 844 GEFLK-RLEEILRDDNKL-AILDAVTQSKVNTITSKVVSKVIPSGTMKKFPQNSMQAMAL 901
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
SGAKGS VN QI CLLGQ LEG+R +M SG+TLPSF PYE RAGG++ GRF +GI
Sbjct: 902 SGAKGSNVNVSQIMCLLGQQALEGRRVPVMTSGKTLPSFKPYETDARAGGYIKGRFYSGI 961
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
+PQE++FHCMAGREGLIDTAVKTSRSGYLQRCL K LEG+ V YD TVRD+D +L+Q LY
Sbjct: 962 RPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVGYDNTVRDADGTLVQFLY 1021
Query: 423 GEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPN 482
G D +D TK+ ++ +F F +N + S
Sbjct: 1022 GGDAVDTTKQSHM--DEFKFCVENYDALLSK----------------------------- 1050
Query: 483 FIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQ--------PLISTFQPDAHFGS 534
++P + +D E K RK +K+ K P P++S + P + GS
Sbjct: 1051 --YNPGEQSYHLD-TELALSYAKKVRKNMKKQ-KDLPHYEQEIKYDPVLSVYNPSKYLGS 1106
Query: 535 ISENLADSVVKYTK----------GRTDASHVD-KFYDMIFYKNLLSLANPGENVGVLAA 583
+SE D + + K + D++ + KF ++ K + SL NPGE VG++A+
Sbjct: 1107 VSEKFQDKLDAFVKEHEHLFASKHNKIDSTLTEKKFRALMQLKYMRSLVNPGEAVGIIAS 1166
Query: 584 QSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLE 643
QSIGEPSTQMTLNTFHFAG G NVTLGIPR+REI+M A+ AIKTP M +P L D+ +
Sbjct: 1167 QSIGEPSTQMTLNTFHFAGHGAANVTLGIPRMREIIMTASAAIKTPQMTLPILDDV--TD 1224
Query: 644 KKANRLAKSMTRITMADVLEKVKIKEWLEISP--EPHMNYQMKFCFIPAHMYRDKTSVKP 701
+A+ KS+ R+ +++ ++KV + E S + +Y + F Y + V
Sbjct: 1225 AQADAFCKSVARVLLSEFIDKVTVTETTSASDSGDNSRSYSVHLKFFTREEYEAQYDVSQ 1284
Query: 702 SKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGR 761
++ + FL LE I K + + Q + DV G A+ +
Sbjct: 1285 PQLENVITENFLHALETQITK------------EVKKQQKSDV-------MPAIGKAVPK 1325
Query: 762 VDVSSDEER--DEEDAVQSHKKVNQEEDNDFEEPEDEERMSERE---------------- 803
+ SS E +++DA + + N ++ +EEP+D+E + R+
Sbjct: 1326 SNNSSGESAGFEDDDASEEKLRKNTKQAVSYEEPDDDEIETMRKAEETSDEEMEDSSDSE 1385
Query: 804 ----------EDDNTSNIG--ERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCK 851
EDD N ++ K E S +V++ HN+V K+S+D ++ WC+
Sbjct: 1386 SVDSSDDNSGEDDFYDNEAKEKKPKRELSKSAKDRQAEVISAHNLVSKFSFDDEDGEWCE 1445
Query: 852 L-LFLPS--------NLFEE-------KE---------------SKHLLKTDGINVNFIS 880
L LP N+ EE KE SK +L T+G+N +
Sbjct: 1446 FQLDLPGNTQKLLMVNIIEELCHKVVVKEVPRIGRCLRPEVEAGSKRVLTTEGVNFKAMW 1505
Query: 881 QYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMT 940
+ +D N++ NDI+ + TYG+EAA I+ E+ NVF Y I V RHL L+AD MT
Sbjct: 1506 EQDDFIDPNRITSNDIYAVLKTYGVEAARNTIVNEINNVFERYAIAVSSRHLDLIADMMT 1565
Query: 941 HSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQG 1000
GTY+A NR GI + S KM++E + + +A + G +SL +PSAR+++G+ + G
Sbjct: 1566 REGTYLAFNRQGIDSSTSSFMKMSYETTCQFLTKAVLDGDRESLDSPSARIVVGKLSKVG 1625
Query: 1001 TGLFQL 1006
TG F L
Sbjct: 1626 TGAFDL 1631
>gi|342320744|gb|EGU12683.1| DNA-directed RNA polymerase [Rhodotorula glutinis ATCC 204091]
Length = 1782
Score = 638 bits (1645), Expect = e-180, Method: Compositional matrix adjust.
Identities = 405/1103 (36%), Positives = 593/1103 (53%), Gaps = 158/1103 (14%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S +AEA + N +QYLVP G+PL GLIQDHV++G L+ +DTF TR +Y L+Y A
Sbjct: 729 SLIAQAEARMIANTDNQYLVPTSGNPLRGLIQDHVVAGVWLTNKDTFFTRDQYYQLIYGA 788
Query: 69 LCILN-----TEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDK 123
L N ++T+PP +WKP P+WTGKQV+STV+ N+ P D I K
Sbjct: 789 LRPENDYTGEGTVKTVPPAVWKPRPMWTGKQVISTVLKNIQPADMCGIH-------FTSK 841
Query: 124 KQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLL 183
+ + +G+ + V + G++L+GI+DK Q G++ +GLVH+V++ +GA A LL
Sbjct: 842 GKVPGSAWGVF--AEEGEVLVHDGDMLTGIIDKAQIGASPFGLVHSVYELYGASTAGKLL 899
Query: 184 SCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLD--T 241
S L++L T +LQ F+ + D+++ + + R +++ G AA + GL
Sbjct: 900 SILSRLLTKFLQTRAFSCRMDDLVLTAKGNHDRRRMLQTVNEKGLSAALDYTGLASADRA 959
Query: 242 DPEI---ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQ 298
DP + ++L+E + A +D + ++VT + + CLP GL++PFP NN+Q
Sbjct: 960 DPATADDLRNRLEEILRDDYKL-AGLDATVEGETNQVTTQLIKTCLPNGLVKPFPHNNMQ 1018
Query: 299 FMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRF 358
M SGAKGS VN QISCLLGQ LEG+R +MVSG+TLPSF +E +PRAGGFV GRF
Sbjct: 1019 TMTVSGAKGSNVNASQISCLLGQQSLEGRRVPVMVSGKTLPSFKAFETAPRAGGFVAGRF 1078
Query: 359 MTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLI 418
+TGI+PQE++FHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEGL VHYD TVR++D S++
Sbjct: 1079 LTGIRPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLRVHYDHTVRNADQSVL 1138
Query: 419 QVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSS 478
Q YGED LDVTK+++L QF F N++ I S
Sbjct: 1139 QFHYGEDSLDVTKQKHLL--QFEFAVRNMQSIISR------------------------- 1171
Query: 479 GKPNFIFSPHRTKFTMDLLEQWYQLDD---KARKKYRKKFKACPQPLISTFQPDAHFGSI 535
++P D LE+ +++ A KK KK P P++S P G++
Sbjct: 1172 ------YNPR------DALERTNDVEEVLPDAMKKSLKKPDTHP-PVLSLASPSTVSGAV 1218
Query: 536 SENLADSVVKYTKG----------------------RTDASHVDKFYDMIFYKNLLSLAN 573
SE A ++ +Y K R D ++ F ++ + + SL
Sbjct: 1219 SERYARAIEEYVKNPKQRLLRPKKKRDMADWPAHIRRDDLVSIEHFRSLMNMRYMRSLVE 1278
Query: 574 PGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEI 633
PGE VG+LA+Q +GEPSTQMTLNTFHFAG G NVTLGIPRLREI+M A++ IKTP+M +
Sbjct: 1279 PGEAVGLLASQGVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTASQDIKTPTMNL 1338
Query: 634 PFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMN-------YQMKFC 686
P + + K +S TR+T++ V++ V ++E L +P+ N Y ++
Sbjct: 1339 PIVESVSDARLKT--FCQSSTRLTLSQVVDDVTVEERL--TPKTSNNSYTRSKLYTVRLN 1394
Query: 687 FIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQG---LKNMNIEQSRDQMED- 742
P Y + SV +I+ R F+ L+ AIAK Q LK+ + R + E
Sbjct: 1395 LFPRADYEAEYSVSSEQILAGIARTFVPLLDKAIAKEIKQNDRELKSQAADVGRGKKEGK 1454
Query: 743 ------DVEDDEGEGAEGAGAALGR-----VDVSSDEERDEEDAVQSHKKVNQEEDNDFE 791
D++G G E AG +GR +D +D+ER A +++E ++
Sbjct: 1455 RRGGKTSGADEDGAGEEDAG-VVGRDDGEVIDGDADDERRGRQADDEQNYDDEDEGDEAA 1513
Query: 792 EPEDE-----------ERMSEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKY 840
+PE+E + S EEDD+ + R K E + + + V ++K
Sbjct: 1514 DPEEELEAKFKSDAEEDEESSDEEDDDPEAVARRSKAESLERMKQYERRVSGSSRFINKL 1573
Query: 841 SYDKKNHMWC-----------KLL-----------------------FLPSNLFEEKESK 866
+DK+N C KLL F+ ++
Sbjct: 1574 VFDKENGESCEFELEFSSQAAKLLLVGIVEEVCRIAVVHEVPGISRGFVAKAANANAAAQ 1633
Query: 867 HLLKTDGINVNFISQYRH-LLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 925
T+G+N+ + Q + ++DLNKL NDI + TYG+EAA II E+ VF+VYGI
Sbjct: 1634 RNAVTEGVNLRQLWQIGYGIVDLNKLGTNDIGAILRTYGVEAARTAIINEMSAVFSVYGI 1693
Query: 926 EVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLR 985
VD RHL+++ADYMT G Y NR G+ N S + K ++E I +A++ G D++
Sbjct: 1694 GVDYRHLTIIADYMTCEGGYKPFNRTGLGNNASPLTKASYETTSAFIAEAALHGDFDNMI 1753
Query: 986 APSARVMLGQECRQGTGLFQLRN 1008
+PS+R+++G+ GTG F +R+
Sbjct: 1754 SPSSRIVVGRPPEAGTGAFAIRS 1776
>gi|207340851|gb|EDZ69074.1| YOR341Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 1317
Score = 638 bits (1645), Expect = e-180, Method: Compositional matrix adjust.
Identities = 394/1087 (36%), Positives = 588/1087 (54%), Gaps = 167/1087 (15%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCI- 71
+AEA L N SQYL P GSP+ GLIQDH+ +G L+ +D+F TR +Y +Y CI
Sbjct: 297 RAEALNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQYQQYIYG--CIR 354
Query: 72 ------LNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQ 125
++I TLPPTI+KP PLWTGKQ+++TV++N+TP D I ++ K +
Sbjct: 355 PEDGHTTRSKIVTLPPTIFKPYPLWTGKQIITTVLLNVTPPDMPGI-------NLISKNK 407
Query: 126 FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSC 185
+ +G + V + G LL GILDK Q+G+++YG+VH++ + +G E A +LS
Sbjct: 408 IKNEYWG--KGSLENEVLFKDGALLCGILDKSQYGASKYGIVHSLHEVYGPEVAAKVLSV 465
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDT---D 242
L +LFT Y+ FT G+ D+ + E ++ RT I+ + G EAA L DT D
Sbjct: 466 LGRLFTNYITATAFTCGMDDLRLTAEGNKWRTDILKTSVDTGREAAAEVTNLDKDTPADD 525
Query: 243 PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
PE++ +LQE + +D S ++ +T+ + C+P+G ++ FP N++Q M
Sbjct: 526 PELLK-RLQEILRDNNK-SGILDAVTSSKVNAITSQVVSKCVPDGTMKKFPCNSMQAMAL 583
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
SGAKGS VN QI CLLGQ LEG+R +MVSG+TLPSF PYE AGG+V GRF +GI
Sbjct: 584 SGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPYETDAMAGGYVKGRFYSGI 643
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
+PQE++FHCMAGREGLIDTAVKTSRSGYLQRCL K LEG+ V YD ++RD+D +L+Q +Y
Sbjct: 644 KPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSIRDADGTLVQFMY 703
Query: 423 GEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPN 482
G D +D+TK ++T QF F DN LLKK+ S AL+ L +S+ K
Sbjct: 704 GGDAIDITKESHMT--QFEFCLDN---------YYALLKKYNPS-ALIEHLDVESALK-- 749
Query: 483 FIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQ--------PLISTFQPDAHFGS 534
+K T+ KYRKK P P+++ + P + GS
Sbjct: 750 ------YSKKTL---------------KYRKKHSKEPHYKQSVKYDPVLAKYNPAKYLGS 788
Query: 535 ISENLADSVVKYTKGR------TDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGE 588
+SEN D + + +D + KF ++ K + SL NPGE VG++A+QS+GE
Sbjct: 789 VSENFQDKLESFLDKNSKLFKSSDGVNEKKFRALMQLKYMRSLINPGEAVGIIASQSVGE 848
Query: 589 PSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANR 648
PSTQMTLNTFHFAG G NVTLGIPRLREI+M A+ AIKTP M +P D+ +++A+
Sbjct: 849 PSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTASAAIKTPQMTLPIWNDVS--DEQADT 906
Query: 649 LAKSMTRITMADVLEKVKIKEWLEISPEPHMN----YQMKFCFIPAHMYRDKTSVKPSKI 704
KS++++ +++V++KV + E S N Y + F + Y ++ V ++
Sbjct: 907 FCKSISKVLLSEVIDKVIVTETTGTSNTAGGNAARSYVIHMRFFDNNEYSEEYDVSKEEL 966
Query: 705 IDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRV-- 762
+ +F+ LE AI K I++ + D+ G A+ R+
Sbjct: 967 QNVISNQFIHLLEAAIVKE---------IKKQKRTTGPDI-----------GVAVPRLQT 1006
Query: 763 ---DVSSDEERDEE--DAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNTSNIG----- 812
+ SS+ +R EE D QSHKK Q ++EP+++E + RE + ++ G
Sbjct: 1007 DVANSSSNSKRLEEDNDEEQSHKKTKQAV--SYDEPDEDEIETMREAEKSSDEEGIDSDK 1064
Query: 813 -----------------ERFKIEFRDSTNVFVKD----VVNQHNIVHKYSYDKKNHMWC- 850
+ +E ++ N +D +++ H + KY++D ++ WC
Sbjct: 1065 ESDSDSEDEDVDMNEQINKSIVEANNNMNKVQRDRQSAIISHHRFITKYNFDDESGKWCE 1124
Query: 851 ----------KLLFLPSNLFEE---------------------KESKHLLKTDGINVNFI 879
KLL + N+ EE + K +L T+G+N +
Sbjct: 1125 FKLELAADTEKLLMV--NIVEEICRKSIIRQIPHIDRCVHPEPENGKRVLVTEGVNFQAM 1182
Query: 880 SQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYM 939
+D++ + ND+ + TYG+EAA I+ E+ NVF+ Y I V RHL L+AD M
Sbjct: 1183 WDQEAFIDVDGITSNDVAAVLKTYGVEAARNTIVNEINNVFSRYAISVSFRHLDLIADMM 1242
Query: 940 THSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQ 999
T GTY+A NR G+ + S KM++E + + +A + + L +PSAR+++G+
Sbjct: 1243 TRQGTYLAFNRQGMETSTSSFMKMSYETTCQFLTKAVLDNEREQLDSPSARIVVGKLNNV 1302
Query: 1000 GTGLFQL 1006
GTG F +
Sbjct: 1303 GTGSFDV 1309
>gi|349581488|dbj|GAA26646.1| K7_Rpa190p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 1664
Score = 637 bits (1644), Expect = e-180, Method: Compositional matrix adjust.
Identities = 393/1087 (36%), Positives = 587/1087 (54%), Gaps = 167/1087 (15%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCI- 71
+AEA L N SQYL P GSP+ GLIQDH+ +G L+ +D+F TR +Y +Y CI
Sbjct: 644 RAEALNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQYQQYIYG--CIR 701
Query: 72 ------LNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQ 125
++I TLPPTI+KP PLWTGKQ+++TV++N+TP D I ++ K +
Sbjct: 702 PEDGHTTRSKIVTLPPTIFKPYPLWTGKQIITTVLLNVTPPDMPGI-------NLISKNK 754
Query: 126 FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSC 185
+ +G + V + G LL GILDK Q+G+++YG+VH++ + +G E A +LS
Sbjct: 755 IKNEYWG--KGSLENEVLFKDGALLCGILDKSQYGASKYGIVHSLHEVYGPEVAAKVLSV 812
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDT---D 242
L +LFT Y+ FT G+ D+ + E ++ RT I+ + G EAA L DT D
Sbjct: 813 LGRLFTNYITATAFTCGMDDLRLTAEGNKWRTDILKTSVDTGREAAAEVTNLDKDTPADD 872
Query: 243 PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
PE++ +LQE + +D S ++ +T+ + C+P+G ++ FP N++Q M
Sbjct: 873 PELLK-RLQEILRDNNK-SGILDAVTSSKVNAITSQVVSKCVPDGTMKKFPCNSMQAMAL 930
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
SGAKGS VN QI CLLGQ LEG+R +MVSG+TLPSF PYE AGG+V GRF +GI
Sbjct: 931 SGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPYETDAMAGGYVKGRFYSGI 990
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
+PQE++FHCMAGREGLIDTAVKTSRSGYLQRCL K LEG+ V YD ++RD+D +L+Q +Y
Sbjct: 991 KPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSIRDADGTLVQFMY 1050
Query: 423 GEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPN 482
G D +D+TK ++T QF F DN LLKK+ S AL+ L +S+
Sbjct: 1051 GGDAIDITKESHMT--QFEFCLDN---------YYALLKKYNPS-ALIEHLDVESA---- 1094
Query: 483 FIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQ--------PLISTFQPDAHFGS 534
K++ L KYRKK P P+++ + P + GS
Sbjct: 1095 -------LKYSKKTL------------KYRKKHSKEPHYKQSVKYDPVLAKYNPAKYLGS 1135
Query: 535 ISENLADSVVKYTKGR------TDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGE 588
+SEN D + + +D + KF ++ K + SL NPGE VG++A+QS+GE
Sbjct: 1136 VSENFQDKLESFLDKNSKLFKSSDGVNEKKFRALMQLKYMRSLINPGEAVGIIASQSVGE 1195
Query: 589 PSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANR 648
PSTQMTLNTFHFAG G NVTLGIPRLREI+M A+ AIKTP M +P D+ +++A+
Sbjct: 1196 PSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTASAAIKTPQMTLPIWNDVS--DEQADT 1253
Query: 649 LAKSMTRITMADVLEKVKIKEWLEISPEPHMN----YQMKFCFIPAHMYRDKTSVKPSKI 704
KS++++ +++V++KV + E S N Y + F + Y ++ V ++
Sbjct: 1254 FCKSISKVLLSEVIDKVIVTETTGTSNTAGGNAARSYVIHMRFFDNNEYSEEYDVSKEEL 1313
Query: 705 IDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRV-- 762
+ +F+ LE AI K I++ + D+ G A+ R+
Sbjct: 1314 QNVISNQFIHLLEAAIVKE---------IKKQKRTTGPDI-----------GVAVPRLQT 1353
Query: 763 ---DVSSDEERDEE--DAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNTSNIG----- 812
+ SS+ +R EE D QSHKK Q ++EP+++E + RE + ++ G
Sbjct: 1354 DVANSSSNSKRLEEDNDEEQSHKKTKQAV--SYDEPDEDEIETMREAEKSSDEEGIDSDK 1411
Query: 813 -----------------ERFKIEFRDSTNVFVKD----VVNQHNIVHKYSYDKKNHMWC- 850
+ +E ++ N +D +++ H + KY++D ++ WC
Sbjct: 1412 ESDSDSEDEDVDMNEQINKSIVEANNNMNKVQRDRQSAIISHHRFITKYNFDDESGKWCE 1471
Query: 851 ----------KLLFLPSNLFEE---------------------KESKHLLKTDGINVNFI 879
KLL + N+ EE + K +L T+G+N +
Sbjct: 1472 FKLELAADTEKLLMV--NIVEEICRMSIIRQIPHIDRCVHPEPENGKRVLVTEGVNFQAM 1529
Query: 880 SQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYM 939
+D++ + ND+ + TYG+EAA I+ E+ NVF+ Y I V RHL L+AD M
Sbjct: 1530 WDQEAFIDVDGITSNDVAAVLKTYGVEAARNTIVNEINNVFSRYAISVSFRHLDLIADMM 1589
Query: 940 THSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQ 999
T GTY+A NR G+ + S KM++E + + +A + + L +PSAR+++G+
Sbjct: 1590 TRQGTYLAFNRQGMETSTSSFMKMSYETTCQFLTKAVLDNEREQLDSPSARIVVGKLNNV 1649
Query: 1000 GTGLFQL 1006
GTG F +
Sbjct: 1650 GTGSFDV 1656
>gi|398366307|ref|NP_014986.3| Rpa190p [Saccharomyces cerevisiae S288c]
gi|2507346|sp|P10964.2|RPA1_YEAST RecName: Full=DNA-directed RNA polymerase I subunit RPA190; AltName:
Full=DNA-directed RNA polymerase I 190 kDa polypeptide;
Short=A190; AltName: Full=DNA-directed RNA polymerase I
largest subunit
gi|1199844|emb|CAA65029.1| O6276 [Saccharomyces cerevisiae]
gi|1420741|emb|CAA99665.1| RPA190 [Saccharomyces cerevisiae]
gi|151945418|gb|EDN63661.1| RNA polymerase A [Saccharomyces cerevisiae YJM789]
gi|256272592|gb|EEU07571.1| Rpa190p [Saccharomyces cerevisiae JAY291]
gi|285815209|tpg|DAA11102.1| TPA: Rpa190p [Saccharomyces cerevisiae S288c]
gi|392296668|gb|EIW07770.1| Rpa190p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 1664
Score = 637 bits (1643), Expect = e-180, Method: Compositional matrix adjust.
Identities = 393/1087 (36%), Positives = 587/1087 (54%), Gaps = 167/1087 (15%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCI- 71
+AEA L N SQYL P GSP+ GLIQDH+ +G L+ +D+F TR +Y +Y CI
Sbjct: 644 RAEALNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQYQQYIYG--CIR 701
Query: 72 ------LNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQ 125
++I TLPPTI+KP PLWTGKQ+++TV++N+TP D I ++ K +
Sbjct: 702 PEDGHTTRSKIVTLPPTIFKPYPLWTGKQIITTVLLNVTPPDMPGI-------NLISKNK 754
Query: 126 FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSC 185
+ +G + V + G LL GILDK Q+G+++YG+VH++ + +G E A +LS
Sbjct: 755 IKNEYWG--KGSLENEVLFKDGALLCGILDKSQYGASKYGIVHSLHEVYGPEVAAKVLSV 812
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDT---D 242
L +LFT Y+ FT G+ D+ + E ++ RT I+ + G EAA L DT D
Sbjct: 813 LGRLFTNYITATAFTCGMDDLRLTAEGNKWRTDILKTSVDTGREAAAEVTNLDKDTPADD 872
Query: 243 PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
PE++ +LQE + +D S ++ +T+ + C+P+G ++ FP N++Q M
Sbjct: 873 PELLK-RLQEILRDNNK-SGILDAVTSSKVNAITSQVVSKCVPDGTMKKFPCNSMQAMAL 930
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
SGAKGS VN QI CLLGQ LEG+R +MVSG+TLPSF PYE AGG+V GRF +GI
Sbjct: 931 SGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPYETDAMAGGYVKGRFYSGI 990
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
+PQE++FHCMAGREGLIDTAVKTSRSGYLQRCL K LEG+ V YD ++RD+D +L+Q +Y
Sbjct: 991 KPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSIRDADGTLVQFMY 1050
Query: 423 GEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPN 482
G D +D+TK ++T QF F DN LLKK+ S AL+ L +S+
Sbjct: 1051 GGDAIDITKESHMT--QFEFCLDN---------YYALLKKYNPS-ALIEHLDVESA---- 1094
Query: 483 FIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQ--------PLISTFQPDAHFGS 534
K++ L KYRKK P P+++ + P + GS
Sbjct: 1095 -------LKYSKKTL------------KYRKKHSKEPHYKQSVKYDPVLAKYNPAKYLGS 1135
Query: 535 ISENLADSVVKYTKGR------TDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGE 588
+SEN D + + +D + KF ++ K + SL NPGE VG++A+QS+GE
Sbjct: 1136 VSENFQDKLESFLDKNSKLFKSSDGVNEKKFRALMQLKYMRSLINPGEAVGIIASQSVGE 1195
Query: 589 PSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANR 648
PSTQMTLNTFHFAG G NVTLGIPRLREI+M A+ AIKTP M +P D+ +++A+
Sbjct: 1196 PSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTASAAIKTPQMTLPIWNDVS--DEQADT 1253
Query: 649 LAKSMTRITMADVLEKVKIKEWLEISPEPHMN----YQMKFCFIPAHMYRDKTSVKPSKI 704
KS++++ +++V++KV + E S N Y + F + Y ++ V ++
Sbjct: 1254 FCKSISKVLLSEVIDKVIVTETTGTSNTAGGNAARSYVIHMRFFDNNEYSEEYDVSKEEL 1313
Query: 705 IDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRV-- 762
+ +F+ LE AI K I++ + D+ G A+ R+
Sbjct: 1314 QNVISNQFIHLLEAAIVKE---------IKKQKRTTGPDI-----------GVAVPRLQT 1353
Query: 763 ---DVSSDEERDEE--DAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNTSNIG----- 812
+ SS+ +R EE D QSHKK Q ++EP+++E + RE + ++ G
Sbjct: 1354 DVANSSSNSKRLEEDNDEEQSHKKTKQAV--SYDEPDEDEIETMREAEKSSDEEGIDSDK 1411
Query: 813 -----------------ERFKIEFRDSTNVFVKD----VVNQHNIVHKYSYDKKNHMWC- 850
+ +E ++ N +D +++ H + KY++D ++ WC
Sbjct: 1412 ESDSDSEDEDVDMNEQINKSIVEANNNMNKVQRDRQSAIISHHRFITKYNFDDESGKWCE 1471
Query: 851 ----------KLLFLPSNLFEE---------------------KESKHLLKTDGINVNFI 879
KLL + N+ EE + K +L T+G+N +
Sbjct: 1472 FKLELAADTEKLLMV--NIVEEICRKSIIRQIPHIDRCVHPEPENGKRVLVTEGVNFQAM 1529
Query: 880 SQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYM 939
+D++ + ND+ + TYG+EAA I+ E+ NVF+ Y I V RHL L+AD M
Sbjct: 1530 WDQEAFIDVDGITSNDVAAVLKTYGVEAARNTIVNEINNVFSRYAISVSFRHLDLIADMM 1589
Query: 940 THSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQ 999
T GTY+A NR G+ + S KM++E + + +A + + L +PSAR+++G+
Sbjct: 1590 TRQGTYLAFNRQGMETSTSSFMKMSYETTCQFLTKAVLDNEREQLDSPSARIVVGKLNNV 1649
Query: 1000 GTGLFQL 1006
GTG F +
Sbjct: 1650 GTGSFDV 1656
>gi|172215|gb|AAA34890.1| RNA polymerase A(I) large subunit [Saccharomyces cerevisiae]
Length = 1664
Score = 637 bits (1643), Expect = e-180, Method: Compositional matrix adjust.
Identities = 393/1087 (36%), Positives = 587/1087 (54%), Gaps = 167/1087 (15%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCI- 71
+AEA L N SQYL P GSP+ GLIQDH+ +G L+ +D+F TR +Y +Y CI
Sbjct: 644 RAEALNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQYQQYIYG--CIR 701
Query: 72 ------LNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQ 125
++I TLPPTI+KP PLWTGKQ+++TV++N+TP D I ++ K +
Sbjct: 702 PEDGHTTRSKIVTLPPTIFKPYPLWTGKQIITTVLLNVTPPDMPGI-------NLISKNK 754
Query: 126 FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSC 185
+ +G + V + G LL GILDK Q+G+++YG+VH++ + +G E A +LS
Sbjct: 755 IKNEYWG--KGSLENEVLFKDGALLCGILDKSQYGASKYGIVHSLHEVYGPEVAAKVLSV 812
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDT---D 242
L +LFT Y+ FT G+ D+ + E ++ RT I+ + G EAA L DT D
Sbjct: 813 LGRLFTNYITATAFTCGMDDLRLTAEGNKWRTDILKTSVDTGREAAAEVTNLDKDTPADD 872
Query: 243 PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
PE++ +LQE + +D S ++ +T+ + C+P+G ++ FP N++Q M
Sbjct: 873 PELLK-RLQEILRDNNK-SGILDAVTSSKVNAITSQVVSKCVPDGTMKKFPCNSMQAMAL 930
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
SGAKGS VN QI CLLGQ LEG+R +MVSG+TLPSF PYE AGG+V GRF +GI
Sbjct: 931 SGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPYETDAMAGGYVKGRFYSGI 990
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
+PQE++FHCMAGREGLIDTAVKTSRSGYLQRCL K LEG+ V YD ++RD+D +L+Q +Y
Sbjct: 991 KPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSIRDADGTLVQFMY 1050
Query: 423 GEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPN 482
G D +D+TK ++T QF F DN LLKK+ S AL+ L +S+
Sbjct: 1051 GGDAIDITKESHMT--QFEFCLDN---------YYALLKKYNPS-ALIEHLDVESA---- 1094
Query: 483 FIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQ--------PLISTFQPDAHFGS 534
K++ L KYRKK P P+++ + P + GS
Sbjct: 1095 -------LKYSKKTL------------KYRKKHSKEPHYKQSVKYDPVLAKYNPAKYLGS 1135
Query: 535 ISENLADSVVKYTKGR------TDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGE 588
+SEN D + + +D + KF ++ K + SL NPGE VG++A+QS+GE
Sbjct: 1136 VSENFQDKLESFLDKNSKLFKSSDGVNEKKFRALMQLKYMRSLINPGEAVGIIASQSVGE 1195
Query: 589 PSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANR 648
PSTQMTLNTFHFAG G NVTLGIPRLREI+M A+ AIKTP M +P D+ +++A+
Sbjct: 1196 PSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTASAAIKTPQMTLPIWNDVS--DEQADT 1253
Query: 649 LAKSMTRITMADVLEKVKIKEWLEISPEPHMN----YQMKFCFIPAHMYRDKTSVKPSKI 704
KS++++ +++V++KV + E S N Y + F + Y ++ V ++
Sbjct: 1254 FCKSISKVLLSEVIDKVIVTETTGTSNTAGGNAARSYVIHMRFFDNNEYSEEYDVSKEEL 1313
Query: 705 IDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRV-- 762
+ +F+ LE AI K I++ + D+ G A+ R+
Sbjct: 1314 QNVISNQFIHLLEAAIVKE---------IKKQKRTTGPDI-----------GVAVPRLQT 1353
Query: 763 ---DVSSDEERDEE--DAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNTSNIG----- 812
+ SS+ +R EE D QSHKK Q ++EP+++E + RE + ++ G
Sbjct: 1354 DVANSSSNSKRLEEDNDEEQSHKKTKQAV--SYDEPDEDEIETMREAEKSSDEEGIDSDK 1411
Query: 813 -----------------ERFKIEFRDSTNVFVKD----VVNQHNIVHKYSYDKKNHMWC- 850
+ +E ++ N +D +++ H + KY++D ++ WC
Sbjct: 1412 ESDSDSEDEDVDMNEQINKSIVEANNNMNKVQRDRQSAIISHHRFITKYNFDDESGKWCE 1471
Query: 851 ----------KLLFLPSNLFEE---------------------KESKHLLKTDGINVNFI 879
KLL + N+ EE + K +L T+G+N +
Sbjct: 1472 FKLELAADTEKLLMV--NIVEEICRKSIIRQIPHIDRCVHPEPENGKRVLVTEGVNFQAM 1529
Query: 880 SQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYM 939
+D++ + ND+ + TYG+EAA I+ E+ NVF+ Y I V RHL L+AD M
Sbjct: 1530 WDQEAFIDVDGITSNDVAAVLKTYGVEAARNTIVNEINNVFSRYAISVSFRHLDLIADMM 1589
Query: 940 THSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQ 999
T GTY+A NR G+ + S KM++E + + +A + + L +PSAR+++G+
Sbjct: 1590 TRQGTYLAFNRQGMETSTSSFMKMSYETTCQFLTKAVLDNEREQLDSPSARIVVGKLNNV 1649
Query: 1000 GTGLFQL 1006
GTG F +
Sbjct: 1650 GTGSFDV 1656
>gi|259149818|emb|CAY86622.1| Rpa190p [Saccharomyces cerevisiae EC1118]
Length = 1664
Score = 637 bits (1642), Expect = e-179, Method: Compositional matrix adjust.
Identities = 393/1085 (36%), Positives = 583/1085 (53%), Gaps = 163/1085 (15%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCI- 71
+AEA L N SQYL P GSP+ GLIQDH+ +G L+ +D+F TR +Y +Y CI
Sbjct: 644 RAEALNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQYQQYIYG--CIR 701
Query: 72 ------LNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQ 125
++I TLPPTI+KP PLWTGKQ+++TV++N+TP D I ++ K +
Sbjct: 702 PEDGHTTRSKIVTLPPTIFKPYPLWTGKQIITTVLLNVTPPDMPGI-------NLISKNK 754
Query: 126 FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSC 185
+ +G + V + G LL GILDK Q+G+++YG+VH++ + +G E A +LS
Sbjct: 755 IKNEYWG--KGSLENEVLFKDGALLCGILDKSQYGASKYGIVHSLHEVYGPEVAAKVLSV 812
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDT---D 242
L +LFT Y+ FT G+ D+ + E ++ RT I+ + G EAA L DT D
Sbjct: 813 LGRLFTNYITATAFTCGMDDLRLTAEGNKWRTDILKTSVDTGREAAAEVTNLDKDTPADD 872
Query: 243 PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
PE++ +LQE + +D S ++ +T+ + C+P+G ++ FP N++Q M
Sbjct: 873 PELLK-RLQEILRDNNK-SGILDAVTSSKVNAITSQVVSKCVPDGTMKKFPCNSMQAMAL 930
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
SGAKGS VN QI CLLGQ LEG+R +MVSG+TLPSF PYE AGG+V GRF +GI
Sbjct: 931 SGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPYETDAMAGGYVKGRFYSGI 990
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
+PQE++FHCMAGREGLIDTAVKTSRSGYLQRCL K LEG+ V YD ++RD+D +L+Q +Y
Sbjct: 991 KPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSIRDADGTLVQFMY 1050
Query: 423 GEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPN 482
G D +D+TK ++T QF F DN LLKK+ S AL+ L +S+
Sbjct: 1051 GGDAIDITKESHMT--QFEFCLDN---------YYALLKKYNPS-ALIEHLDVESA---- 1094
Query: 483 FIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQ--------PLISTFQPDAHFGS 534
K++ L KYRKK P P+++ + P + GS
Sbjct: 1095 -------LKYSKKTL------------KYRKKHSKEPHYKQSVKYDPVLAKYNPAKYLGS 1135
Query: 535 ISENLADSVVKYTKGR------TDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGE 588
+SEN D + + +D + KF ++ K + SL NPGE VG++A+QS+GE
Sbjct: 1136 VSENFQDKLESFLDKNSKLFKSSDGVNEKKFRALMQLKYMRSLINPGEAVGIIASQSVGE 1195
Query: 589 PSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANR 648
PSTQMTLNTFHFAG G NVTLGIPRLREI+M A+ AIKTP M +P D+ +++A+
Sbjct: 1196 PSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTASAAIKTPQMTLPIWNDVS--DEQADT 1253
Query: 649 LAKSMTRITMADVLEKVKIKEWLEISPEPHMN----YQMKFCFIPAHMYRDKTSVKPSKI 704
KS++++ +++V++KV + E S N Y + F + Y ++ V ++
Sbjct: 1254 FCKSISKVLLSEVIDKVIVTETTGTSNTAGGNAARSYVIHMRFFDNNEYSEEYDVSKEEL 1313
Query: 705 IDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRV-- 762
+ +F+ LE AI K I++ + D+ G A+ R+
Sbjct: 1314 QNVISNQFIHLLEAAIVKE---------IKKQKRTTGPDI-----------GVAVPRLQT 1353
Query: 763 ---DVSSDEERDEE--DAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNTSNIG----- 812
+ SS+ +R EE D QSHKK Q D + ++ E M E E+ + I
Sbjct: 1354 DVANSSSNSKRLEEDNDEEQSHKKTKQAVSYDETDEDEIETMREAEKSSDEEGIDSDKES 1413
Query: 813 ---------------ERFKIEFRDSTNVFVKD----VVNQHNIVHKYSYDKKNHMWC--- 850
+ +E ++ N +D +++ H + KY++D ++ WC
Sbjct: 1414 DSDSEDEDVDMNEQINKSIVEANNNMNKVQRDRQSAIISHHRFITKYNFDDESGKWCEFK 1473
Query: 851 --------KLLFLPSNLFEE---------------------KESKHLLKTDGINVNFISQ 881
KLL + N+ EE + K +L T+G+N +
Sbjct: 1474 LELAADTEKLLMV--NIVEEICRKSIIRQIPHIDRCVHPEPENGKRVLVTEGVNFQAMWD 1531
Query: 882 YRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 941
+D++ + ND+ + TYG+EAA I+ E+ NVF+ Y I V RHL L+AD MT
Sbjct: 1532 QEAFIDVDGITSNDVAAVLKTYGVEAARNTIVNEINNVFSRYAISVSFRHLDLIADMMTR 1591
Query: 942 SGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGT 1001
GTY+A NR G+ + S KM++E + + +A + + L +PSAR+++G+ GT
Sbjct: 1592 QGTYLAFNRQGMETSTSSFMKMSYETTCQFLTKAVLDNEREQLDSPSARIVVGKLNNVGT 1651
Query: 1002 GLFQL 1006
G F +
Sbjct: 1652 GSFDV 1656
>gi|190407636|gb|EDV10903.1| RNA polymerase I subunit [Saccharomyces cerevisiae RM11-1a]
Length = 1664
Score = 634 bits (1636), Expect = e-179, Method: Compositional matrix adjust.
Identities = 392/1087 (36%), Positives = 586/1087 (53%), Gaps = 167/1087 (15%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCI- 71
+AEA L N SQYL P GSP+ GLIQDH+ +G L+ +D+F TR +Y +Y CI
Sbjct: 644 RAEALNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQYQQYIYG--CIR 701
Query: 72 ------LNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQ 125
++I TLPPTI+KP PLWTGKQ+++TV++N+TP D I ++ K +
Sbjct: 702 PEDGHTTRSKIVTLPPTIFKPYPLWTGKQIITTVLLNVTPPDMPGI-------NLISKNK 754
Query: 126 FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSC 185
+ +G + V + G LL GILDK Q+G+++YG+VH++ + +G E A +LS
Sbjct: 755 IKNEYWG--KGSLENEVLFKDGALLCGILDKSQYGASKYGIVHSLHEVYGPEVAAKVLSV 812
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDT---D 242
L +LFT Y+ FT G+ D+ + E ++ RT I+ + G EAA L DT D
Sbjct: 813 LGRLFTNYITATAFTCGMDDLRLTAEGNKWRTDILKTSVDTGREAAAEVTNLDKDTPADD 872
Query: 243 PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
PE++ +LQE + +D S ++ +T+ + C+P+G ++ FP N++Q M
Sbjct: 873 PELLK-RLQEILRDNNK-SGILDAVTSSKVNAITSQVVSKCVPDGTMKKFPCNSMQAMAL 930
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
SGAKGS VN QI CLLGQ LEG+R +MVSG+TLPSF PYE AGG+V GRF +GI
Sbjct: 931 SGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPYETDAMAGGYVKGRFYSGI 990
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
+PQE++FHCMAGREGLIDTAVKTSRSGYLQRCL K LEG+ V YD ++RD+D +L+Q +Y
Sbjct: 991 KPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSIRDADGTLVQFMY 1050
Query: 423 GEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPN 482
G D +D+TK ++T QF F DN LLKK+ S AL+ L +S+
Sbjct: 1051 GGDAIDITKESHMT--QFEFCLDN---------YYALLKKYNPS-ALIEHLDVESA---- 1094
Query: 483 FIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQ--------PLISTFQPDAHFGS 534
K++ L KYRKK P P+++ + P + GS
Sbjct: 1095 -------LKYSKKTL------------KYRKKHSKEPHYKQSVKYDPVLAKYNPAKYLGS 1135
Query: 535 ISENLADSVVKYTKGR------TDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGE 588
+SE D + + +D + KF ++ K + SL NPGE VG++A+QS+GE
Sbjct: 1136 VSEKFQDKLESFLDKNSKLFKSSDGVNEKKFRALMQLKYMRSLINPGEAVGIIASQSVGE 1195
Query: 589 PSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANR 648
PSTQMTLNTFHFAG G NVTLGIPRLREI+M A+ AIKTP M +P D+ +++A+
Sbjct: 1196 PSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTASAAIKTPQMTLPIWNDVS--DEQADT 1253
Query: 649 LAKSMTRITMADVLEKVKIKEWLEISPEPHMN----YQMKFCFIPAHMYRDKTSVKPSKI 704
KS++++ +++V++KV + E S N Y + F + Y ++ V ++
Sbjct: 1254 FCKSISKVLLSEVIDKVIVTETTGTSNTAGGNAARSYVIHMRFFDNNEYSEEYDVSKEEL 1313
Query: 705 IDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRV-- 762
+ +F+ LE AI K I++ + D+ G A+ R+
Sbjct: 1314 QNVISNQFIHLLEAAIVKE---------IKKQKRTTGPDI-----------GVAVPRLQT 1353
Query: 763 ---DVSSDEERDEE--DAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNTSNIG----- 812
+ SS+ +R EE D QSHKK Q ++EP+++E + RE + ++ G
Sbjct: 1354 DVANSSSNSKRLEEDNDEEQSHKKTKQAV--SYDEPDEDEIETMREAEKSSDEEGIDSDK 1411
Query: 813 -----------------ERFKIEFRDSTNVFVKD----VVNQHNIVHKYSYDKKNHMWC- 850
+ +E ++ N +D +++ H + KY++D ++ WC
Sbjct: 1412 ESDSDSEDEDVDMNEQINKSIVEANNNMNKVQRDRQSAIISHHRFITKYNFDDESGKWCE 1471
Query: 851 ----------KLLFLPSNLFEE---------------------KESKHLLKTDGINVNFI 879
KLL + N+ EE + K +L T+G+N +
Sbjct: 1472 FKLELAADTEKLLMV--NIVEEICRKSIIRQIPHIDRCVHPEPENGKRVLVTEGVNFQAM 1529
Query: 880 SQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYM 939
+D++ + ND+ + TYG+EAA I+ E+ NVF+ Y I V RHL L+AD M
Sbjct: 1530 WDQEAFIDVDGITSNDVAAVLKTYGVEAARNTIVNEINNVFSRYAISVSFRHLDLIADMM 1589
Query: 940 THSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQ 999
T GTY+A NR G+ + S KM++E + + +A + + L +PSAR+++G+
Sbjct: 1590 TRQGTYLAFNRQGMETSTSSFMKMSYETTCQFLTKAVLDNEREQLDSPSARIVVGKLNNV 1649
Query: 1000 GTGLFQL 1006
GTG F +
Sbjct: 1650 GTGSFDV 1656
>gi|254569378|ref|XP_002491799.1| RNA polymerase I subunit [Komagataella pastoris GS115]
gi|238031596|emb|CAY69519.1| RNA polymerase I subunit [Komagataella pastoris GS115]
gi|328351700|emb|CCA38099.1| DNA-directed RNA polymerase I subunit A1 [Komagataella pastoris CBS
7435]
Length = 1640
Score = 634 bits (1636), Expect = e-179, Method: Compositional matrix adjust.
Identities = 383/1087 (35%), Positives = 592/1087 (54%), Gaps = 155/1087 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL--- 69
+AEA L N SQYL P GSP+ GLIQDH+ +G L+ +D+F TR +Y L+Y L
Sbjct: 613 RAEAYNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTNKDSFFTREKYQQLIYGCLRPE 672
Query: 70 --CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
+ + I+TLPPT+ KP+PLWTGKQ+++T+++N+ P I+ L + K +
Sbjct: 673 DGHTVKSRIQTLPPTVLKPVPLWTGKQIITTILLNIKP-----IKMPGL--NLKSKNKIK 725
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
++ +G + V IR+GELL GILDK Q+G++ +GL+H++ + +G + LS L
Sbjct: 726 ASYWG--GDSIEDRVIIRNGELLVGILDKSQYGASNFGLIHSLHEVYGPSVSSKALSVLG 783
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDP--EI 245
+LFT Y+ +GFT G+ D+ + E +++R++I+ ++ LG AA LP DT P +
Sbjct: 784 RLFTNYIMMIGFTCGMDDLRLTAEGNKQRSEILQESVDLGRVAAAEVTNLPKDTKPGDKE 843
Query: 246 ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGA 305
+L+E + +D +S ++ VT+ + C+PEG ++ FP N++Q M SGA
Sbjct: 844 FMRRLEEILRDDGKL-GILDAVTQSKVNVVTSKVVSSCIPEGTMKRFPENSMQAMALSGA 902
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS VN QI CLLGQ LEG+R +MVSG+TLPSF P++ RAGG++ GRF +GI+PQ
Sbjct: 903 KGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPFDTDARAGGYIKGRFYSGIRPQ 962
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
E++FHCMAGREGLIDTAVKTSRSGYLQRCL K LEG + YD +VRD D SLIQ LYG D
Sbjct: 963 EYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGAHIGYDNSVRDGDGSLIQFLYGGD 1022
Query: 426 GLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIF 485
+DV K ++ +F F +N +LL++ +
Sbjct: 1023 SVDVVKESHMY--KFQFCAENYD---------SLLER----------------------Y 1049
Query: 486 SPHRTKFTMDLLEQWYQLDDKARKKYRK-------KFKACPQPLISTFQPDAHFGSISEN 538
+P + +D E + K RK +K +F+ P+I+ F P + G++SE+
Sbjct: 1050 NPGQLVHNLD-AESALKYAKKCRKNLKKQSNKMHYQFEDKYMPVINKFNPAKYLGAVSEH 1108
Query: 539 LADSVVKYT--------KGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPS 590
D++ + K + KF ++ K + SL NPGE VG++A+QS+GEPS
Sbjct: 1109 FQDALDNFIDNNPQLFDKKSKRSLTEKKFRALMQLKYMRSLINPGEAVGIIASQSVGEPS 1168
Query: 591 TQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLA 650
TQMTLNTFHFAG G NVTLGIPR+REI+M A+ IKTP M +P L D+ L+++A
Sbjct: 1169 TQMTLNTFHFAGHGAANVTLGIPRMREIIMTASLNIKTPQMMLPILDDV--LDEQAQAFC 1226
Query: 651 KSMTRITMADVLEKVKIKEWL-EISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFE 709
+S+ R+ +++ ++ V + E + Y ++ F A Y + V +++ +
Sbjct: 1227 RSVARVVLSEFIDYVTVTETSGSDAGVGSKQYNIRLNFFSAEDYEQEYDVTRAELAEVLV 1286
Query: 710 RKFLKELEVAIAKRAAQGLKNMNIEQSRDQ------------------------MEDDVE 745
R FL +LEVAI K+ +++SRDQ ++ +
Sbjct: 1287 RSFLSKLEVAIRKQ---------LKKSRDQAVVPDEEIGEAVPKSDRAFETSEAVKKSIN 1337
Query: 746 DDEGEGAEGAGAALGRVDVSSDEERDEE-DAVQSHKKVNQEEDNDFEEPEDEERMSEREE 804
D +G+ + G+ VS DE ++E +A+ K + EE+ DF E+E+ + E
Sbjct: 1338 DGDGDELDNNENEQGKEPVSYDEPDEQELEAMNRAAKSSDEEEEDFMSSEEEKSSCDDES 1397
Query: 805 DDN--------TSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC------ 850
DD NI ++ +E + + V++ H+++ +++D KN WC
Sbjct: 1398 DDEEINAHRPPAENILDKMALERQTA-------VISAHSMISAFNFDDKNGTWCEFQIKM 1450
Query: 851 -----KLLFLPSNLFEE-----------------------KESKHLLKTDGINVNFISQY 882
KLL + N+ EE + +H + T+G+N + +
Sbjct: 1451 VGQNYKLLMV--NIIEELCQNVVVREIPNIGRCVLPQPEAGQRRHFI-TEGVNFQAMWEQ 1507
Query: 883 RHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHS 942
+D++ + ND + + TYG+EAA I+ E+ NVF Y I V RHL L+AD MT
Sbjct: 1508 DAFVDVDAIRSNDTYAVLRTYGVEAARNTIVNEINNVFGRYAIAVSSRHLDLIADMMTRQ 1567
Query: 943 GTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTG 1002
GTY+A NR GI + S KM++E + + +A + + L +PSAR+++G+ + GTG
Sbjct: 1568 GTYLAFNRQGIENSTSSFMKMSYETTCQFLTKAVLDNDREELESPSARLVVGKLSKVGTG 1627
Query: 1003 LFQLRNR 1009
+F + R
Sbjct: 1628 IFDVMAR 1634
>gi|392592741|gb|EIW82067.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Coniophora puteana RWD-64-598 SS2]
Length = 1699
Score = 634 bits (1635), Expect = e-179, Method: Compositional matrix adjust.
Identities = 406/1072 (37%), Positives = 593/1072 (55%), Gaps = 118/1072 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA + N +QYLVP G PL GLIQDHV++G ++ +D F TR EY L+Y AL
Sbjct: 663 RAEAMLIANTDNQYLVPTSGKPLRGLIQDHVVAGVWMTCQDAFFTREEYFQLLYGALRPE 722
Query: 73 NT-----EIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
+ ++TLPPTIWKP P WTGKQ++STV+ N+TP + E L+ + K +
Sbjct: 723 DQIDQVGRLKTLPPTIWKPAPRWTGKQIISTVLKNITPTN------AEGLN-LESKAKVP 775
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
+G + +V G+L+SG+LDK FG+T YGLVH+V++ +GA+ A LL L+
Sbjct: 776 GNLWG--KGSTEDNVIFVDGDLVSGVLDKSAFGATDYGLVHSVYELYGADVAGKLLGILS 833
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAAC----NALGLPLDTDP 243
+LFT +LQ FT + D+ + + D++R+ I++ A GT+AA + +GL + P
Sbjct: 834 RLFTKFLQHRAFTCRMDDLALTPDADKRRSDILDDACNFGTDAAIENFPSLVGLDKEDVP 893
Query: 244 EIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVES 303
+ ++S L++ + A +D ++ + +T ++ C+P GL+ FP N++Q M S
Sbjct: 894 QALASLLRDILRDDNKM-AGLDVTVRNKMGGLTKSVEDACVPGGLLRKFPYNHMQMMTLS 952
Query: 304 GAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQ 363
GAKGS VN QISC LGQ ELEG+R +MVSG++LPSF E AGG+V RF+TGI+
Sbjct: 953 GAKGSAVNARQISCGLGQQELEGRRVPLMVSGKSLPSFKALETKAIAGGYVASRFLTGIK 1012
Query: 364 PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYG 423
PQEF+FHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEGL VHYD TVR SD+S+ Q YG
Sbjct: 1013 PQEFYFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLRVHYDHTVRGSDMSIYQFHYG 1072
Query: 424 EDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNF 483
DGLDVTK+++L QF F+ N K +N L+ ++ A
Sbjct: 1073 GDGLDVTKQKHLY--QFGFVAQN------EKSFVNRLQPAEVAQA--------------- 1109
Query: 484 IFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSV 543
I + +L++ + +DK R+ + P ++ F P + GS SE A ++
Sbjct: 1110 INEEDAIAYMKKVLKKSAEREDKHTPAPREVY----DPALNKFTPSRYLGSTSEKFASAL 1165
Query: 544 VKYTKG-------------------RTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQ 584
YTK R D V+ F ++ K + SLA+PGE VG+LA+Q
Sbjct: 1166 DSYTKTNPHNLLRSKKLHHPLPIKKRKDNMSVNHFKMLMNVKYMRSLADPGEAVGLLASQ 1225
Query: 585 SIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEK 644
+GEPSTQMTLNTFHFAG G NVTLGIPRLREI+M A++ KTPSM + D + E
Sbjct: 1226 GVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTASQKPKTPSMTMEARADTSQGEV 1285
Query: 645 KANRLAKSMTRITMADVLEKVKIKEWLEISPEPH-MNYQMKFCFIPAHMYRDKTSVKPSK 703
A K R+T+A V+EK+ ++E L S + H + + F P YR + V+PS+
Sbjct: 1286 SA--FCKQANRMTLAQVVEKITVRERLTASGDAHRTEFIVDMEFFPEEEYRSEYDVEPSE 1343
Query: 704 IIDHFERKFL----KELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGA-EGAGAA 758
I+ F KF KE++ I K A LK+ E + ++ D+ D G+ E A +
Sbjct: 1344 ILAVFSSKFPLFLKKEIQNEIKKIDAD-LKSQIAELGKGKVSKDLPVDGGDAEDEAAPPS 1402
Query: 759 LGRVDVSSDEE-----RDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNTSNIGE 813
GR D EE DE+ A Q ++ + D D + E +E E +++ E
Sbjct: 1403 RGRDDDERSEEGDGDAEDEKRARQRKQQATYDSDEDEDPTELDEDAIEAAFATASNDDEE 1462
Query: 814 RFKI-EFRDSTNVFVKDVVN--QHNIVHKYSYD---KK-------NHMWCKLLFLP---- 856
R +I + S +K V + QHN++ S+D KK + KLL +
Sbjct: 1463 RAEIPKLSKSLKERIKVVSDLFQHNLIFATSFDFTTKKCTFKLEFTAEFPKLLLVGVVER 1522
Query: 857 -------------SNLF------EEKESKHL-LKTDGINVN--FISQYRHLLDLNKLYVN 894
++ F ++K K + + T+G N+ ++ + ++ + +Y N
Sbjct: 1523 TCHKSIIREIPGIADCFSSAKDNDQKGKKKIQVTTNGSNLQGMWLFNDQDVIVNDTIYSN 1582
Query: 895 DIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIR 954
DI+ + TYG+E A I+RE+ VF+ Y I+VD RHL L+ADYMT G Y NR+G+
Sbjct: 1583 DIYAILKTYGVEMARAAILREIGGVFSAYKIDVDMRHLELIADYMTFEGGYKPFNRSGLS 1642
Query: 955 LNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
NPS + K ++E + A++ G D L PS +++G+ R GTG+F +
Sbjct: 1643 SNPSPLLKASYETTAAFLSDATLYGDFDDLSTPSGNIVMGRPNRTGTGVFDV 1694
>gi|255713026|ref|XP_002552795.1| KLTH0D01628p [Lachancea thermotolerans]
gi|238934175|emb|CAR22357.1| KLTH0D01628p [Lachancea thermotolerans CBS 6340]
Length = 1654
Score = 633 bits (1633), Expect = e-178, Method: Compositional matrix adjust.
Identities = 389/1066 (36%), Positives = 584/1066 (54%), Gaps = 130/1066 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCI- 71
+AEA L N SQYL P GSP+ GLIQDH+ +G L+ +D+F TR EY +Y CI
Sbjct: 639 RAEAFNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTNKDSFFTREEYQQYIYG--CIR 696
Query: 72 ------LNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQ 125
++ T+PP ++KP+PLWTGKQ+++TV++N+TP D I +L K +
Sbjct: 697 PEDGHATRNKLLTVPPAVFKPVPLWTGKQIITTVLLNVTPADMPGI-------NLLSKNK 749
Query: 126 FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSC 185
+ +G + V ++GELL GILDK Q+G+++YG+VH++ + +G + + +LS
Sbjct: 750 IKNEYWG--KGSTENDVVFKNGELLCGILDKSQYGASKYGIVHSLHEVYGPDVSAKVLSV 807
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDT---D 242
L +LFT Y+ FT G+ D+ + +E ++ R+ I+ + +G AA L D D
Sbjct: 808 LGRLFTNYITATAFTCGMDDLRLTEEGNKWRSDILKTSTDVGRVAAAEVTNLDKDVSAND 867
Query: 243 PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
E++ +L+E + +D S ++ +T+ + C+P+G ++ FP N++Q M
Sbjct: 868 SELLK-RLEEILRDDNKL-GILDAVTSSKVNSITSQVVSKCVPDGTMKKFPNNSMQAMAL 925
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
SGAKGS VN QI CLLGQ LEG+R +MVSG+TLPSF P+E AGG++ GRF +GI
Sbjct: 926 SGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPFETDAMAGGYIKGRFYSGI 985
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
+PQE++FHCMAGREGLIDTAVKTSRSGYLQRCL K LEG+ + YD +VRD+D +LIQ LY
Sbjct: 986 KPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHISYDNSVRDADGTLIQFLY 1045
Query: 423 GEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPN 482
G D +DVT+ ++T QF F DN LLKK+ + AL+ L +S+ K +
Sbjct: 1046 GGDAVDVTQESHMT--QFKFCADNYDA---------LLKKYNPA-ALIEHLDVESALKYS 1093
Query: 483 FIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADS 542
HR K + Y +K K P++S F P + GS+SEN D
Sbjct: 1094 KKALKHRKK-------------TEKVPHYSQKVKY--DPVVSKFNPSKYLGSVSENFQDK 1138
Query: 543 VVKYTKGRT------DASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLN 596
+ + D KF ++ K + SL NPGE VG++A+QS+GEPSTQMTLN
Sbjct: 1139 LESFIDSNNDLFKSRDTVSEKKFRALMQLKYMRSLINPGEAVGIIASQSVGEPSTQMTLN 1198
Query: 597 TFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRI 656
TFHFAG G NVTLGIPR+REI+M A+ AIKTP M +P L D+ + +A+ KS+T++
Sbjct: 1199 TFHFAGHGAANVTLGIPRMREIIMTASAAIKTPQMTLPILADV--TDPQADTFCKSVTKV 1256
Query: 657 TMADVLEKVKIKEWLEIS--PEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLK 714
+++V+++V++ E S +Y + F + Y ++ V ++ + KFLK
Sbjct: 1257 MLSEVVDRVEVTESTGFSEGSTGSRSYFINMKFFGSDEYGEEYDVSKEELQNVVAEKFLK 1316
Query: 715 ELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEED 774
LEVAI K + K + E GEG G++D DE+ DE++
Sbjct: 1317 SLEVAIVKEIKKQKKMASPEIGVAVPRSQAAIASGEG--------GKID---DEDNDEQE 1365
Query: 775 AVQSHKKVNQEEDNDFEEPE---DEERMSER-------------------EEDDNTSNIG 812
+ + K+ +D D +E E + E+ S+ EE+ SN
Sbjct: 1366 SRKRTKQAVSYDDPDDDEVETMREAEKSSDEEVDSEMDSDSSDSDDAEDVEEEKPLSNKT 1425
Query: 813 ER--FKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLL---------FLPSNLFE 861
+ K++ RD + VV+ H V KY++D ++ WC+ L N+ E
Sbjct: 1426 KSGLTKVQ-RDRQSA----VVSSHRFVTKYNFDDEDGEWCQFTIELAADTEKLLMVNIVE 1480
Query: 862 E---------------------KESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMA 900
+ + K +L T+G+N + +D+N + ND+ +
Sbjct: 1481 DICRKSVIREVKNIDRCVHPEPENGKRILVTEGVNFQEMWDQDAFIDVNGITSNDVASVL 1540
Query: 901 STYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFI 960
TYG+EAA I+ E+ NVF+ Y I V RHL L+AD MT GTY+A NR G+ + S +
Sbjct: 1541 KTYGVEAARNTIVNEINNVFSRYAISVSFRHLDLIADMMTRQGTYLAFNRQGMETSTSSL 1600
Query: 961 QKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
KM++E + + +A + ++L +PSAR++LG+ GTG F +
Sbjct: 1601 MKMSYETTCQFLTKAVLDNECENLDSPSARIVLGKLNNVGTGAFDV 1646
>gi|410083934|ref|XP_003959544.1| hypothetical protein KAFR_0K00540 [Kazachstania africana CBS 2517]
gi|372466136|emb|CCF60409.1| hypothetical protein KAFR_0K00540 [Kazachstania africana CBS 2517]
Length = 1662
Score = 630 bits (1624), Expect = e-177, Method: Compositional matrix adjust.
Identities = 389/1080 (36%), Positives = 587/1080 (54%), Gaps = 155/1080 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCI- 71
+AEA L N SQYL P GSP+ GLIQDH+ +G L+ +D+F TR +Y +Y CI
Sbjct: 644 RAEAFNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTNKDSFFTREQYQQYIYG--CIR 701
Query: 72 ------LNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQ 125
++ T+PP + KP+PLWTGKQ+++TV++N+TP D I + +
Sbjct: 702 PEDGHATRAKLATVPPAVMKPVPLWTGKQIITTVLLNITPPDMPGI-------NLKSSNK 754
Query: 126 FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSC 185
+ +G + V ++GELL GILDK Q+G+++YG++H + + +G + + LS
Sbjct: 755 IKNDYWG--KGSNENEVIFKNGELLCGILDKSQYGASKYGIIHCLHEVYGPDVSAKALSV 812
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDT---D 242
L +LFT Y+ FT G+ D+ + +E ++ R +I+ + G EAA LP DT D
Sbjct: 813 LGRLFTNYITATAFTCGMDDLRLTEEGNKWRKEILKTSVDTGREAAAEVTNLPKDTPSND 872
Query: 243 PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
PE++ +L+E + +D S ++ +T+ + C+P G ++ FP N++Q M
Sbjct: 873 PELLK-RLEEIIRDNNK-SGILDAVTSSKVNTITSKVVSTCVPGGTMKKFPENSMQSMAL 930
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
SGAKGS VN QI CLLGQ LEG+R +MVSG+TLPSF PYE RAGG++ GRF +GI
Sbjct: 931 SGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPYETDARAGGYIKGRFYSGI 990
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
+PQE++FHCMAGREGLIDTAVKT+ SGYLQRCL K LEG+ V YD ++RD+D +LIQ+LY
Sbjct: 991 RPQEYYFHCMAGREGLIDTAVKTASSGYLQRCLTKQLEGVHVSYDNSIRDADGTLIQMLY 1050
Query: 423 GEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPN 482
G D +DVTK +LT +F+F +N LLKK+ S AL+ L +++ K
Sbjct: 1051 GGDAIDVTKESHLT--KFNFCLENYDA---------LLKKYNPS-ALIEHLDVETALK-- 1096
Query: 483 FIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADS 542
+S K Y+ Y++ K P++S + P + GS+SEN D
Sbjct: 1097 --YSKKSLK---------YRKKHAKEAHYQQTVKY--DPILSKYNPAKYLGSVSENFQDQ 1143
Query: 543 VVKYTKGRTD--ASHVD----KFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLN 596
+ + + SH D KF ++ K + SL NPGE VG++A+QS+GEPSTQMTLN
Sbjct: 1144 LENFLHDNSKLLKSHEDVNEKKFRALMQLKYMRSLINPGEAVGIIASQSVGEPSTQMTLN 1203
Query: 597 TFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRI 656
TFHFAG G NVTLGIPRLREI+M A+ AIKTP M +P L D+ +++A+ AKS++++
Sbjct: 1204 TFHFAGHGAANVTLGIPRLREIIMTASAAIKTPQMTLPILDDV--TDEQADTFAKSISKV 1261
Query: 657 TMADVLEKVKIKE--WLEISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLK 714
+++V++KV + E ++ ++Y + F Y D+ V ++ + FL
Sbjct: 1262 VLSEVIDKVVVTETSGSSVNNADALSYVINMKFFDEAEYNDEYDVSKEELQEVISTHFLH 1321
Query: 715 ELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRVDVSS-------- 766
ELE AI K + R Q V D G A+ R+ S
Sbjct: 1322 ELETAIVK------------EIRKQKRTTVPD--------VGMAVPRLQEISESTNTKRM 1361
Query: 767 DEERDEEDAVQSHKKVNQEEDNDFEEPEDEE----RMSEREEDDNTSNIGERFKIE---- 818
DE+ D+E + HKK Q ++EP+++E R +E+ D+ N + E
Sbjct: 1362 DEDNDDE---EYHKKTKQAVS--YDEPDEDEIETMRQAEKSSDEEDFNSDKESDSESESD 1416
Query: 819 -----FRDSTNVFVKD---------------VVNQHNIVHKYSYDKKNHMWC-------- 850
++ N ++D +++ H V KY++D ++ WC
Sbjct: 1417 DESEELQNELNKTIEDANKNMSKTQRDRQSAIISNHRFVAKYNFDDESGKWCEFRLELAA 1476
Query: 851 ---KLLFLPSNLFEE---------------------KESKHLLKTDGINVNFISQYRHLL 886
KLL + N+ E+ + K +L T+G+N N + +
Sbjct: 1477 DTEKLLMV--NIVEDICRKSVIRQVPKIDRCVHPEPENGKRVLVTEGVNFNAMWDQEDFI 1534
Query: 887 DLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYV 946
D++ + ND+ + TYG+EAA ++ E+ NVF+ Y I V RHL L+AD MT GTY+
Sbjct: 1535 DVDGIRSNDVSAVLKTYGVEAARNTVVNEINNVFSRYAISVSFRHLDLLADMMTRQGTYL 1594
Query: 947 AMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
A NR G+ + S + KM++E + + +A + + L PSAR++LG+ GTG F +
Sbjct: 1595 AFNRQGMETSTSSLMKMSYETTCQFLTKAVLDNEREELNTPSARIVLGKLNNVGTGSFDV 1654
>gi|365989414|ref|XP_003671537.1| hypothetical protein NDAI_0H01200 [Naumovozyma dairenensis CBS 421]
gi|343770310|emb|CCD26294.1| hypothetical protein NDAI_0H01200 [Naumovozyma dairenensis CBS 421]
Length = 1669
Score = 629 bits (1621), Expect = e-177, Method: Compositional matrix adjust.
Identities = 389/1067 (36%), Positives = 580/1067 (54%), Gaps = 125/1067 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCI- 71
+AEA L N SQYL P GSP+ GLIQDH+ +G L+ +D+F TR +Y +Y CI
Sbjct: 647 RAEAFNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQYQQYIYG--CIR 704
Query: 72 ------LNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQ 125
++ TLPPTI+KP+PLWTGKQ++STV++N+TP D I + +
Sbjct: 705 PEDGHATRPKLITLPPTIYKPVPLWTGKQIISTVLLNVTPADMPGI-------NLTSSNK 757
Query: 126 FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSC 185
+ +G + + V ++GELL GILDK Q+G++++G+VH++ + +G A +LS
Sbjct: 758 IKNEYWG--KSSNENEVLFKNGELLCGILDKSQYGASKFGIVHSLHEVYGPSIAAKVLSV 815
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDT---D 242
L +LFT Y+ FT G+ D+ + +E ++ R+ I+ + G EAA L DT D
Sbjct: 816 LGRLFTNYIMSTAFTCGMDDLRLSEEGNKWRSDILKTSVDTGREAAAEVTNLDKDTAADD 875
Query: 243 PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
E++ +L+E + +D S ++ +T+ + C+P+G ++ FP N++Q M
Sbjct: 876 AELLK-RLEEILRDNNK-SGILDAVTSSKVNSITSKVVSKCVPDGTMKKFPYNSMQAMAL 933
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
SGAKGS VN QI CLLGQ LEG+R +MVSG+TLPSF PYE AGG++ GRF +GI
Sbjct: 934 SGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPYETDAMAGGYIKGRFYSGI 993
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
+PQE++FHCMAGREGLIDTAVKTSRSGYLQRCL K LEG+ V YD +VRD D +LIQ LY
Sbjct: 994 KPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSVRDGDGTLIQFLY 1053
Query: 423 GEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPN 482
G D +DVTK ++T +F F DN Y +LN K +P AL+ L +++
Sbjct: 1054 GGDAVDVTKESHMT--EFDFCLDN------YDALLN--KYNP--SALIEHLDVETA---- 1097
Query: 483 FIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADS 542
K++ L+ + +A K K+ P++S F P + GS+SE D
Sbjct: 1098 -------LKYSKKTLKNRKKHAKEAHHKNATKY----DPVLSKFNPAKYLGSVSEKFQDK 1146
Query: 543 VVKYTKGRT------DASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLN 596
+ Y + D KF ++ K + SL NPGE VG++A+QS+GEPSTQMTLN
Sbjct: 1147 LESYLDKNSKLFKSHDNVSEKKFRALMQLKYMRSLINPGEAVGIIASQSVGEPSTQMTLN 1206
Query: 597 TFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRI 656
TFHFAG G NVTLGIPR+REI+M A+ AIKTP M +P D+ +++A+ KS++++
Sbjct: 1207 TFHFAGHGAANVTLGIPRMREIIMTASAAIKTPQMTLPIWQDVS--DEQADTFCKSISKV 1264
Query: 657 TMADVLEKVKIKEWLEISPE--PHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLK 714
+++V++KV + E + +Y + F Y + V ++ + KF+
Sbjct: 1265 VLSEVIDKVTVTETTGSTANNTSARSYAINMKFFDEEEYNGEYDVSKVELQNVIAVKFIH 1324
Query: 715 ELEVAIAK------------------RAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAG 756
LE I K ++ L M S+ ED E+D + +
Sbjct: 1325 ALEAVIVKEVKKQKKTTVLDIGIAVPKSQTALGAMETINSKKSAEDGDEEDYQKKTK--- 1381
Query: 757 AALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDN--TSNIGER 814
A+ D DE +A +S +++N + ++D E D E SE + DN S I E
Sbjct: 1382 QAVSYEDPDDDELETMREAEKSDEEMNSDMNSDAESVSDNEE-SEDVDMDNYLDSTIAEA 1440
Query: 815 FK---IEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC-----------KLLFLPSNLF 860
K RD + V + H V KY++D ++ WC KLL + N+
Sbjct: 1441 NKNMTKTQRDRQSAMVTN----HRFVTKYNFDDEHGKWCEFRIELAADTEKLLMV--NII 1494
Query: 861 EE---------------------KESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYM 899
E+ + K +L T+G+N + +D++ + ND+ +
Sbjct: 1495 EDICKKCIIREVPHIDRCVHPEPENGKRVLVTEGVNFEAMWDQEAFIDVDGITSNDVASV 1554
Query: 900 ASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSF 959
TYG+EAA I+ E+ NVF+ Y I V RHL L+AD MT GTY+A NR G+ + S
Sbjct: 1555 LKTYGVEAARNTIVNEINNVFSRYAISVSYRHLDLIADMMTRQGTYLAFNRQGMESSTSS 1614
Query: 960 IQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+ KM++E L+ + +A + + L +PSAR+++G+ GTG F +
Sbjct: 1615 LMKMSYETTLQFLTKAVLDNEREELESPSARIVMGKLNNVGTGSFDI 1661
>gi|50286997|ref|XP_445928.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525234|emb|CAG58847.1| unnamed protein product [Candida glabrata]
Length = 1643
Score = 628 bits (1620), Expect = e-177, Method: Compositional matrix adjust.
Identities = 388/1078 (35%), Positives = 587/1078 (54%), Gaps = 154/1078 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCI- 71
+AEA L N SQYL P GSP+ GLIQDH+ +G L+ +D+F TR +Y +Y CI
Sbjct: 630 RAEAFNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTNKDSFFTREQYQQYIYG--CIR 687
Query: 72 ------LNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQ 125
++ TLPP I KP+PLWTGKQ+++TV++N+TP D + GI K
Sbjct: 688 PEDGHATRAKLVTLPPAIHKPIPLWTGKQIITTVLLNVTPPD---------MPGINLK-- 736
Query: 126 FGSTQYGLVHAVWDTH-----VTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAI 180
+ + + W H V + G+LL GILDK Q+G+++YG+VH++ + +G E A
Sbjct: 737 ---SSNKIKNEYWGKHSEENDVIFKDGQLLCGILDKSQYGASKYGIVHSLHEVYGPETAA 793
Query: 181 SLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLD 240
+LS L +LFT Y+ FT G+ D+ + + ++ R+ I+ ++ +G +AA L D
Sbjct: 794 KVLSVLGRLFTNYIMNTAFTCGMDDLRLTSDGNKWRSDILKESVDIGRQAAAEVTNLDKD 853
Query: 241 T---DPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNL 297
T DPE++ +L+E + +D + ++ +T+ + C+P G ++ FP N++
Sbjct: 854 TPSNDPELLK-RLEEILRDNNKL-GILDAVSSAKVNTITSKVVSQCVPGGTMKKFPENSM 911
Query: 298 QFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGR 357
Q M SGAKGS VN QI CLLGQ LEG+R +MVSG+TLPSF PYE AGG++ GR
Sbjct: 912 QAMALSGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPYETDAMAGGYIKGR 971
Query: 358 FMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSL 417
F +GI+PQE++FHCMAGREGLIDTAVKTSRSGYLQRCL K LEG+ + YD +VRD+D +L
Sbjct: 972 FYSGIKPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHISYDNSVRDADGTL 1031
Query: 418 IQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKS 477
IQ LYG D +DV K ++T +F+F DN LLKK+ S AL+ + ++
Sbjct: 1032 IQFLYGGDAVDVIKESHMT--EFNFCLDNYDA---------LLKKYNPS-ALVEHVDVET 1079
Query: 478 SGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISE 537
+ K++ L+ + D+ K Y++ K P++S + P + G++SE
Sbjct: 1080 A-----------LKYSKKTLKNRKKHKDE--KHYKQTLKY--DPVLSKYNPAKYLGAVSE 1124
Query: 538 NLADSVVKY------TKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPST 591
N D + + T ++ + KF ++ K + SL NPGE VG++A+QS+GEPST
Sbjct: 1125 NFQDKLELFLDKSSKTFKEYESINEKKFRALMQLKYMRSLINPGEAVGIIASQSVGEPST 1184
Query: 592 QMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAK 651
QMTLNTFHFAG G NVTLGIPR+REI+M A+ AIKTP M +P D+ ++ A+ K
Sbjct: 1185 QMTLNTFHFAGHGAANVTLGIPRMREIIMTASAAIKTPQMTLPIWNDVS--DETADTFCK 1242
Query: 652 SMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERK 711
S++++ +++V++KV + E S +Y + F Y ++ V ++ K
Sbjct: 1243 SISKVILSEVIDKVTVTETAGSS----RSYVINMKFFDESEYNEEYDVSKQELQTVIAEK 1298
Query: 712 FLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRVDVSS---DE 768
FL+ LE I K I++ + D+ G A +G V+ SS DE
Sbjct: 1299 FLRSLEAIIVKE---------IKKQKKVSSSDI----GMAVPKAQTTMGAVEGSSKKMDE 1345
Query: 769 ERDEEDAVQSHKKVNQE------EDNDFEEPEDEERMSEREEDDNTS------------- 809
+ DEE Q H K Q ++++ E ++ E+ S+ E D +
Sbjct: 1346 DNDEE---QYHNKTKQAVSYDEPDEDEIETMKEAEKSSDEELDSDMESKSESSDSEDDDE 1402
Query: 810 --NIGERFKIEFRDSTNVFVKD-------VVNQHNIVHKYSYDKKNHMWC---------- 850
N+ E F+ ++ N KD ++ H V KY++D K+ WC
Sbjct: 1403 DVNMDE-FESHIAEANNNMSKDQRDRQSAIITNHKFVTKYNFDDKSGKWCEFKLELAADT 1461
Query: 851 -KLLFLPSNLFEE---------------------KESKHLLKTDGINVNFISQYRHLLDL 888
KLL + N+ E+ + K +L T+G+N + +D+
Sbjct: 1462 EKLLMV--NIVEDICRKTIIRQVPHIDRCIRPEPENGKRVLVTEGVNFQAMWDQEAFIDV 1519
Query: 889 NKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAM 948
+ + NDI + TYG+EAA I+ E+ NVF+ Y I V RHL L+AD MT GTY+A
Sbjct: 1520 DGITSNDIASVLQTYGVEAARNTIVNEINNVFSRYAISVSFRHLDLIADMMTRQGTYLAF 1579
Query: 949 NRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
NR G+ + S + KM++E + + +A + + L +PSAR++LG+ GTG F +
Sbjct: 1580 NRQGMETSTSSLMKMSYETTCQFLTKAVLDNEREQLESPSARIVLGKLNNVGTGAFDI 1637
>gi|254581290|ref|XP_002496630.1| ZYRO0D04532p [Zygosaccharomyces rouxii]
gi|238939522|emb|CAR27697.1| ZYRO0D04532p [Zygosaccharomyces rouxii]
Length = 1667
Score = 628 bits (1619), Expect = e-177, Method: Compositional matrix adjust.
Identities = 387/1070 (36%), Positives = 582/1070 (54%), Gaps = 131/1070 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCI- 71
++EA L N SQYL P GSPL GLIQDH+ +G L+ +D+F TR +Y +Y CI
Sbjct: 645 RSEAFNLANTDSQYLTPTSGSPLRGLIQDHISAGVWLTNKDSFFTRDQYQQYIYG--CIR 702
Query: 72 ------LNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQ 125
+I T+PP + KP+PLWTGKQ+++TVI+N+TP D I +L K +
Sbjct: 703 PEDGHSTRPKIVTVPPAVMKPVPLWTGKQIITTVIMNVTPADMPGI-------NLLSKNK 755
Query: 126 FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSC 185
+ +G + V + G LL GILDK Q+G+++YG+VH++ + +G E A +LS
Sbjct: 756 IKNEYWG--QGSTENEVIFKDGALLCGILDKSQYGASKYGIVHSLHEVYGPETAAKVLSV 813
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDT---D 242
L +LFT ++ F+ G+ D+ + E ++ R ++ + +G +AA LP DT D
Sbjct: 814 LGRLFTNFITNTAFSCGMDDLRLTAEGNKDRKDLLKTSTDVGRQAAAEVTNLPTDTPSND 873
Query: 243 PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
PE++ +L+E + +D S ++ VT+ + +P+G ++ FP N++Q M
Sbjct: 874 PELLK-RLEEILRDDNK-SGILDAVTSSKVNSVTSKVVSTVIPKGTMKKFPQNSMQAMAL 931
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
SGAKGSTVN QI CLLGQ LEG+R +MVSG+TLPSF P+E AGG++ GRF +GI
Sbjct: 932 SGAKGSTVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPFETDSMAGGYIKGRFYSGI 991
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
+PQE++FHCMAGREGLIDTAVKTSRSGYLQRCL K LEG+ V YD TVRD D +L+Q LY
Sbjct: 992 KPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGIHVSYDNTVRDGDGTLVQFLY 1051
Query: 423 GEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPN 482
G D +D TK ++T QF F +N LL+K+ S AL+ L +S+
Sbjct: 1052 GGDAVDTTKESHMT--QFDFCLENYDA---------LLRKYNPS-ALVEHLDVESA---- 1095
Query: 483 FIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADS 542
K++ L+ ++D + K K+ P++S + P + GS+SE D
Sbjct: 1096 -------LKYSKKALKSRKKIDKEPHYKNSDKY----DPVLSKYNPAKYLGSVSEKFQDK 1144
Query: 543 VVKYTKGRT------DASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLN 596
+ + + + KF ++ K + SL NPGE VG++AAQS+GEPSTQMTLN
Sbjct: 1145 LEGFLDSHSKQLKLHSGINEKKFRALMQLKYMRSLVNPGEAVGIIAAQSVGEPSTQMTLN 1204
Query: 597 TFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRI 656
TFHFAG G NVTLGIPR+REI+M A+ AIKTP M +P + + +A+ KS+T++
Sbjct: 1205 TFHFAGHGAANVTLGIPRMREIVMTASAAIKTPQMSLPVWNHVS--DDQASIFCKSITKV 1262
Query: 657 TMADVLEKVKIKEWLEISP--EPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLK 714
+++V++KV + E +S P +Y + F Y ++ V ++ + KFL
Sbjct: 1263 VLSEVVDKVTVTETTGVSEHGSPARSYAVHMKFYGKDAYGEEYDVSKEELQNVVATKFLY 1322
Query: 715 ELEVAIAKRAAQGLKNMNIEQSRDQMED-DVEDDEGEGAEGAGAALGRVDVSSDEERDEE 773
LE+AI K + Q + M D V + + A G+G S+E+ DEE
Sbjct: 1323 YLEMAIVKELKK--------QKKTSMPDIGVAVPKSQTALGSGEGPTS---GSNEDNDEE 1371
Query: 774 DAVQSHKKVNQEEDNDFEEPE---DEERMSEREEDDNTSNIG------------------ 812
+A Q K+ E+ D +E E E+ S+ E D+ + G
Sbjct: 1372 EARQKTKQAVSYEEPDEDEIETMRQAEKSSDEEGLDSDMDSGESDNESEKDEKDEEEDSI 1431
Query: 813 ERFKIEFRDSTNVFVKD----VVNQHNIVHKYSYDKKNHMWC-----------KLLFLPS 857
E E + + +D V+++H + KY++D ++ WC KLL +
Sbjct: 1432 ESAMTEANKNMSKSQRDRQHAVISEHKFITKYNFDDEDGQWCNFKLELSGDTEKLLMV-- 1489
Query: 858 NLFEE-------KESKH--------------LLKTDGINVNFISQYRHLLDLNKLYVNDI 896
N+ E+ +E H +L T+G+N + +D++ + ND+
Sbjct: 1490 NIVEDICRKSVIREVPHISRCIPGEPVGDRRMLTTEGVNFQAMWDQEMFIDVDGIRSNDV 1549
Query: 897 HYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLN 956
+ TYG+EAA I+ E+ NVF+ Y I V RHL L+AD MT G Y+A NR G+ +
Sbjct: 1550 AAVLRTYGVEAARNTIVYEINNVFSRYAISVSFRHLDLIADLMTRQGNYLAFNRQGMETS 1609
Query: 957 PSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
S KM++E + + +A + + L++PSAR++LG+ GTG F +
Sbjct: 1610 TSSFMKMSYETTCQFLTKAVLDNDREKLQSPSARIVLGKLNNVGTGAFDV 1659
>gi|213407078|ref|XP_002174310.1| DNA-directed RNA polymerase I subunit RPA1 [Schizosaccharomyces
japonicus yFS275]
gi|212002357|gb|EEB08017.1| DNA-directed RNA polymerase I subunit RPA1 [Schizosaccharomyces
japonicus yFS275]
Length = 1657
Score = 626 bits (1614), Expect = e-176, Method: Compositional matrix adjust.
Identities = 381/1079 (35%), Positives = 585/1079 (54%), Gaps = 152/1079 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL--- 69
+AEA F+ N SQYLVP G P+ GLIQDHV+ G L+ +D+F TR EY L++QAL
Sbjct: 638 RAEAQFIANTDSQYLVPTSGDPIRGLIQDHVVMGVWLTNKDSFFTRDEYQQLLFQALKPD 697
Query: 70 -CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGS 128
+ I+T+PP + +P P++TGKQ+++T+++NL P D+ + L K +
Sbjct: 698 ESGMYGRIKTVPPALIRPKPMYTGKQIITTILLNLKPADRPGLN--------LKSKAKVA 749
Query: 129 TQYGLVHAVW-----DTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLL 183
++Y W + V G L+ GILDK FG++ +G+VH++ + +GA+ A LL
Sbjct: 750 SKY------WSPTSEEGAVLFDDGVLIHGILDKSSFGASTFGMVHSIHELYGADIAGRLL 803
Query: 184 SCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDP 243
S L++LFT + Q GFT + D+ + + D R +++ + G A C+ + LP+DT
Sbjct: 804 SVLSRLFTAFAQMRGFTCRMDDLRLDERGDAWRRELLENGKDFGLLAHCDYVQLPIDTSR 863
Query: 244 EIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVES 303
+++++ L+E + + +D K ++ +T++I C+PEGL+ FP N++Q M S
Sbjct: 864 DLLNANLEEVIRDDEKLQG-LDAAMKGKMNGLTSSIINKCIPEGLLTKFPKNHMQAMTVS 922
Query: 304 GAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQ 363
GAKGS VN QISCLLGQ ELEG+R +MVSG++LPSFLP++ S +AGGF+ RF+TG+
Sbjct: 923 GAKGSNVNVSQISCLLGQQELEGRRVPLMVSGKSLPSFLPFDTSAKAGGFIASRFLTGMC 982
Query: 364 PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYG 423
PQE++FHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEGL+V YD TVRD+D S++Q YG
Sbjct: 983 PQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLMKHLEGLSVQYDHTVRDADGSVVQFRYG 1042
Query: 424 EDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNF 483
ED LDVTK+++L QF F N K +L++K+ + L +
Sbjct: 1043 EDALDVTKQKHLY--QFEFSARNYK---------SLIQKYKVKSVL------------SA 1079
Query: 484 IFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSV 543
+ S + + L++ ++ D P++ + P + GS+SE +V
Sbjct: 1080 VDSDTASSYAKKALKKPHKYD----------------PVLDKYPPSRYLGSVSEKFQKAV 1123
Query: 544 VKYTKGRTD---ASHVD-----------KFYDMIFYKNLLSLANPGENVGVLAAQSIGEP 589
+YTK D AS + KF ++ + SL PGE VGV+A+QS+GEP
Sbjct: 1124 DEYTKKNPDNLIASKKESKQDGTLLNESKFKALMQLRYQQSLVEPGEGVGVMASQSVGEP 1183
Query: 590 STQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRL 649
STQMTLNTFHFAG G NVTLGIPRLREI+M A+ +IKTP+M + + E+++ +
Sbjct: 1184 STQMTLNTFHFAGFGAKNVTLGIPRLREIIMTASASIKTPTMTLRLNEGVS--EERSKQF 1241
Query: 650 AKSMTRITMADVLEKVKIKEWL--EISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDH 707
K ++++ +A+V+++V + E + + S +Y +K P Y ++ V +I
Sbjct: 1242 CKEVSKLVLAEVVKQVVVTERISGQGSDTQSKSYSIKLELYPKSEYEEEYGVTQEEIEAS 1301
Query: 708 FERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEG---AEGAGAALGRVDV 764
F FLK L I +I +++ + +D GE E G A
Sbjct: 1302 FTTSFLKVLGRII---------KADIAKTKQRKSNDSVPKIGEALAPLESFGEANADAAE 1352
Query: 765 SSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREE------------------DD 806
E D+ DA + ++ ++ P+D++R++ + E D+
Sbjct: 1353 QEAMEDDDNDATNARMTTRSKQHASYDGPDDDDRLAMQAERAAAKDGDDMEEDDGYNSDE 1412
Query: 807 NTSNIGERFK----IEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC-----------K 851
+ S R K + ++ + + + N + +D K+ W K
Sbjct: 1413 SVSEYMARKKGKNSVSLKEKKKLRLTNAREILNNCRRIDFDDKSGEWALVELEFPITTEK 1472
Query: 852 LLFLPSNLFEEKESKHLLK------------------------TDGINVNFISQYRHLLD 887
LL + +L E+ K ++ T+G+N+ + ++ +
Sbjct: 1473 LLMV--SLVEQACHKSVVHEIPGISRCYPKPPDSAMDKIPMVITEGVNLRAVWEFYEEIH 1530
Query: 888 LNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVA 947
+N LY NDI + YG+EAA I+RE+ +VF VYGI+VD RHLSL+ADYMT G Y A
Sbjct: 1531 MNDLYTNDIAAVLRIYGVEAARNAIVREISSVFGVYGIDVDHRHLSLIADYMTFEGGYKA 1590
Query: 948 MNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
NR GI + S KM+FE + A++ G +D + PSAR+++G+ GTG F L
Sbjct: 1591 FNRMGIEYSTSPFAKMSFETTCHFLTDAALSGSKDEVMNPSARLVVGRVGNFGTGSFDL 1649
>gi|316997017|dbj|BAJ52636.1| RNA polymerase I largest subunit [Monosiga ovata]
Length = 1041
Score = 625 bits (1613), Expect = e-176, Method: Compositional matrix adjust.
Identities = 398/1087 (36%), Positives = 588/1087 (54%), Gaps = 157/1087 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL--C 70
+AEA+ + +QY DGSPL GLIQDH+++G +L+ RDT L +A Y LVY L
Sbjct: 11 RAEAANIATTDNQYCA-LDGSPLRGLIQDHIVAGFQLTCRDTMLDQATYQQLVYGCLRDH 69
Query: 71 ILNTEIRTLPPTIWKPMPLWTGKQVLSTVI---------INLTPKDKVIIRHGELLSGIL 121
+I T+PP + KP LW+GKQV++TV+ +NLT K KV+ + +G +
Sbjct: 70 YDGRKIITVPPCMIKPKMLWSGKQVITTVLKNITAGYVGLNLTSKAKVV---NKWSAGDM 126
Query: 122 DKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAIS 181
D + + V R GELL+G++DK Q G+T YGL+H+ + +G A
Sbjct: 127 DLE-------------GEDLVIFRAGELLNGVMDKNQCGATAYGLIHSCHELYGGRIAAE 173
Query: 182 LLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDT 241
+LS + +LFT +L+ + GV DIL++ D R ++I + ++G +A + L LPL+
Sbjct: 174 VLSAMGRLFTGFLKYRCISFGVDDILLQPGADAARVQVIERGLKIGPKAVRDFLQLPLED 233
Query: 242 D-----------PEIISSQL--QEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGL 288
D I S L Q AS+ + + +S INQ +P GL
Sbjct: 234 DDLHTPHGQHVLKRAIESTLRDQTTAASLDSYMMSVSGDLQS------ETINQT-VPAGL 286
Query: 289 IEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSP 348
+ FP N+LQ +++SGAKGS VN QIS LLG LEG+R +M+SG+TLPSF ++ S
Sbjct: 287 TKQFPYNSLQLIIQSGAKGSNVNATQISSLLGPQALEGRRVPVMISGKTLPSFPAFDPSL 346
Query: 349 RAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDM 408
RAGG + RF+TG++PQEF+FHCMAGREGL+DTAVKTSRSGYLQRCLVKHLE L ++YD+
Sbjct: 347 RAGGTIFDRFLTGLKPQEFYFHCMAGREGLVDTAVKTSRSGYLQRCLVKHLEDLKINYDL 406
Query: 409 TVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLA 468
TVRD+D S++Q LYG+DG+DVTK + L + F F+ N + +L++L L A
Sbjct: 407 TVRDADGSVVQFLYGDDGMDVTKTKQL--QNFGFMGAN------FHAMLDVLNGRDLEQA 458
Query: 469 LLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQP 528
P ++ K+ +E+ + D P +S ++P
Sbjct: 459 F-----------PGKEYAHKGWKYHQKAMEKPAKYD----------------PALSRYRP 491
Query: 529 DAHFGSISENLADSVVKYTKGRTD------ASH---VDKFYDMIFYKNLLSLANPGENVG 579
D +FG++SE+L + KY D A H DK ++ K++ +LA+PGENVG
Sbjct: 492 DRYFGAVSESLTRELQKYMTADKDRLLSGKAGHKLTPDKLQQLVNLKSMRTLADPGENVG 551
Query: 580 VLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDM 639
VLAAQ++GEPSTQMTLNTFHFAGR DMNVTLGIPRLREILM AT+ IKTP M +P LP
Sbjct: 552 VLAAQALGEPSTQMTLNTFHFAGRSDMNVTLGIPRLREILMTATQKIKTPLMRVPLLPGE 611
Query: 640 PKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMN-YQMKFCFIPAHMYRDKTS 698
L +A +L+ + R+++ADVL+ V + L + Y+++ FIP Y ++
Sbjct: 612 EPL-AEAVKLSARLQRVSLADVLQDVHVTHQLHFGQDKRARLYRLQMDFIPPSEYHERFH 670
Query: 699 VKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIE-----------QSRDQMEDDVEDD 747
+ ++++ E + +L AIAK A +G + NI+ +SR + ++D
Sbjct: 671 LSANQLLKFVEATLITKLGNAIAK-ATKGASSRNIDSVIETVAPAAGKSRGSKSGEGDED 729
Query: 748 EGEGAEGAGAALGRVDVSSDE---ERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREE 804
+GA+ A D S +E + + EDA H ND E+ E
Sbjct: 730 AEDGADEREEADSESDDSDNEVGPDENLEDAGTLHSSAKARHANDRGTYEEGSDSGSGSE 789
Query: 805 DDNTSNIGE----------RFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNH------- 847
D+ ++ GE R + + S + + + H +VH Y YD+ H
Sbjct: 790 TDSGNDEGEAPAVPAPTETRTPKKGKLSKSDRIAAAIRAHGLVHDYDYDEAGHSCTITYQ 849
Query: 848 MWCK----------------------------LLFLPSNLFEEKESKHLLKTDGINVNFI 879
+ C+ +L N E+++ L+ +GIN+ +
Sbjct: 850 LGCEVGRLLIVSLVEAIAPKIVIRMTQGIKRCVLTKSDNKLPERDT---LQVEGINIPEL 906
Query: 880 SQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYM 939
++ LLD+NK+ NDI + YGIEAA +IRE+ VF VYGI VD RHLSL++D+M
Sbjct: 907 WRHAGLLDINKIRSNDIWAINGVYGIEAARATMIREINEVFKVYGISVDHRHLSLISDFM 966
Query: 940 THSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQ 999
T G A+NR G+R + + KM+FE + +R A+++G D + S+R+++G+
Sbjct: 967 TFEGNIRALNRIGMRSSVNPFHKMSFETSTDFLRSATLEGDHDVCSSNSSRLVVGKLVGG 1026
Query: 1000 GTGLFQL 1006
GTGL L
Sbjct: 1027 GTGLHTL 1033
>gi|449549948|gb|EMD40913.1| hypothetical protein CERSUDRAFT_131304 [Ceriporiopsis subvermispora
B]
Length = 1727
Score = 625 bits (1612), Expect = e-176, Method: Compositional matrix adjust.
Identities = 396/1081 (36%), Positives = 577/1081 (53%), Gaps = 135/1081 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
++EA F+ N +QYLVP G PL GLIQDHV++G ++ +D F TR EY L+Y AL
Sbjct: 677 RSEAMFIANTDNQYLVPTSGKPLRGLIQDHVVAGLWMTAQDAFFTREEYFQLLYGALRPE 736
Query: 73 NT------EIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQF 126
N + TLPPTIWKP PLWTGKQ++STV+ N+TP++ G+ Q
Sbjct: 737 NEPGHHDGRLITLPPTIWKPKPLWTGKQIISTVMRNITPEN---------FEGLNLHAQA 787
Query: 127 GSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCL 186
+ + V GELL G+LDK FG+T++G+VH+V++ +GA+ A LL L
Sbjct: 788 KVPGHLWGKDSREGTVIFMDGELLCGVLDKSAFGATEFGMVHSVYELYGADVAGKLLGIL 847
Query: 187 AKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNAL----GLPLDTD 242
++LFT +LQ FT + D+++ + D KRT+++ + RLGTE A + +P +
Sbjct: 848 SRLFTKFLQHRAFTCRMDDLVLTPQADAKRTELLRQNERLGTEGAIDNFPSLSSVPDEEK 907
Query: 243 PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
P ++ + L++ + A +D K L ++T +I C+P GL+ FP N++Q M
Sbjct: 908 PSVLRNLLEDVLRDDNKM-AGLDMTVKGKLARLTKSIADACMPHGLLRQFPHNHMQAMTL 966
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
SGAKGS VN QISC LGQ ELEG+R +MVSG+TLPSF P+E AGG+V RF+TG+
Sbjct: 967 SGAKGSAVNAQQISCALGQQELEGRRVPVMVSGKTLPSFKPFETKAIAGGYVASRFLTGV 1026
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
+PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEG+ VHYD TVR SD S+ Q Y
Sbjct: 1027 KPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGIRVHYDNTVRGSDSSIYQFHY 1086
Query: 423 GEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKH-PLSLALLLLLTFKSSGKP 481
G D LDVTK+++L QF F+ N L+L+ +H P SL ++ + P
Sbjct: 1087 GGDSLDVTKQKHLL--QFDFIVRN---------HLSLVHRHRPKSLEGVV-----NEDAP 1130
Query: 482 NFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLAD 541
+ +++ +L D R +FK P +S F P GS SE A+
Sbjct: 1131 EY-------------MKKVLKLKD--RPSELAQFK----PALSVFNPSRSLGSTSEKFAE 1171
Query: 542 SVVKYT----------KGRTD------ASHVDKFYDMIFY-KNLLSLANPGENVGVLAAQ 584
V +Y KG D +K + ++ + K + SL PGE VG+LA+Q
Sbjct: 1172 KVEEYIKKNPHGLLKKKGEEDRLKRRYKPISNKHFKLLMHVKYMRSLVEPGEAVGLLASQ 1231
Query: 585 SIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEK 644
+GEPSTQMTLNTFHFAG G NVTLGIPRLREI+M A+ KTPSM + P +P E
Sbjct: 1232 GVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTASTKPKTPSMTMTVRPGVP--ES 1289
Query: 645 KANRLAKSMTRITMADVLEKVKIKEWLEISPEP-HMNYQMKFCFIPAHMYRDKTSVKPSK 703
+ K TR+ ++ V++KV +KE L S + + ++ F P + Y+ + +V+P++
Sbjct: 1290 DIDTFCKKATRLALSHVVDKVTVKERLTGSGNARNKEFTIELAFYPEYQYQTEYNVEPAE 1349
Query: 704 IIDHFERKF-----------LKELEVAIAKRAAQGLKNMNIEQS---------------R 737
I+ F KF LK+L+ + + ++ K + QS R
Sbjct: 1350 ILASFGTKFPVIFKKELQTELKKLDADLKNQISELGKGKTLRQSNRAAGDDDDDNDAEDR 1409
Query: 738 DQMEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEE 797
+ D +D+ E +G +A R + ++ E+D + + ++ D E
Sbjct: 1410 PSRKKD-DDETSEVGDGDASAAKRQRQTQEQTSYEDDEDEGMDAAGEFDEADIEAAYASP 1468
Query: 798 RMSEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC----KLL 853
+ E ++TSN +F+ ++ + + V S + KLL
Sbjct: 1469 AEYDESESEDTSNTRADLSKRVEKVEQMFMHNLPSATSFVFSDSGCTIGLQFSSTMPKLL 1528
Query: 854 -----------------------FLPSNLFEEKESKHLLKTDGINVNFISQYR-----HL 885
F+ + E+ + L T+G N+ + ++ L
Sbjct: 1529 LVGIVEKTCVKTVIREIPGITDCFMTKEDGKSGEAIYTLTTNGSNIPGLWRFACSDDDSL 1588
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D ++L NDI+ + YG+EAA I+RE+ VFAVY I+VD RHL L+ADYMT G Y
Sbjct: 1589 IDEDRLQSNDINAILCAYGVEAARATILREIGGVFAVYKIDVDIRHLELIADYMTFDGGY 1648
Query: 946 VAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQ 1005
NR GI NPS + K ++E I A++ G D L PS +++G+ GTG+F
Sbjct: 1649 KPFNRKGISTNPSPLLKASYETTASFISDATLHGDFDDLTTPSGNIVMGRLNLTGTGVFD 1708
Query: 1006 L 1006
+
Sbjct: 1709 V 1709
>gi|403215737|emb|CCK70236.1| hypothetical protein KNAG_0D04970 [Kazachstania naganishii CBS 8797]
Length = 1671
Score = 624 bits (1610), Expect = e-176, Method: Compositional matrix adjust.
Identities = 390/1083 (36%), Positives = 577/1083 (53%), Gaps = 160/1083 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCI- 71
+AEA L N SQYL P GSP+ GLIQDH+ +G L+ +D+F TR +Y +Y CI
Sbjct: 649 RAEAFNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQYQQYIYG--CIR 706
Query: 72 ------LNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQ 125
++ T+PP +WKP+PLWTGKQ+++TV++N+TP D + GI K
Sbjct: 707 PEDGHATRPKLVTVPPAVWKPVPLWTGKQIITTVLLNVTPAD---------MPGINLKSN 757
Query: 126 FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSC 185
+ + V ++GELL GILDK Q+G+++YG+VH++ + +G + A +LS
Sbjct: 758 NKIKNEYWGKSSEENEVLFKNGELLCGILDKNQYGASKYGIVHSLHEVYGPDIAAKVLSV 817
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDT---D 242
L +LFT Y+ FT G+ D+ + E ++ R I+ + G EAA L DT D
Sbjct: 818 LGRLFTNYIMATAFTCGMDDLRLTAEGNKWRKDILKTSVDTGREAAAEVTNLEKDTTADD 877
Query: 243 PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
PE++ +LQE + +D S ++ +T+ + C+P+G ++ FP N++Q M
Sbjct: 878 PELLK-RLQEVLRDNNK-SGILDAVTSSKVNAITSKVVSTCVPDGTMKKFPYNSMQAMAL 935
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
SGAKGS VN QI CLLGQ LEG+R +MVSG+TLPSF PYE AGG+V GRF +GI
Sbjct: 936 SGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPYETDAMAGGYVKGRFYSGI 995
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
+PQE++FHCMAGREGLIDTAVKTSRSGYLQRCL K LEG+ V YD +VRD D +LIQ LY
Sbjct: 996 KPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSVRDGDGTLIQFLY 1055
Query: 423 GEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPN 482
G D +DVTK ++T +F F +N LLKK+ S AL+ L +S+ K
Sbjct: 1056 GGDAVDVTKESHMT--KFDFCLENYDA---------LLKKYNPS-ALIEHLDVESALK-- 1101
Query: 483 FIFSPHRTKFTMDLLEQWYQLDDKARKKYRKK--FKACPQ--PLISTFQPDAHFGSISEN 538
+S K+ RKK+ K+ +K P+ P+++ + P + GS+SE
Sbjct: 1102 --YSKKSLKY---------------RKKHAKEAHYKQSPKYDPVLAKYNPAKYLGSVSEK 1144
Query: 539 LADSV-------VKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPST 591
D + K K D S KF ++ K + SL NPGE VG++A+QS+GEPST
Sbjct: 1145 FQDKLETFIDKNSKLFKHNDDISE-KKFRALMQLKYMRSLINPGEAVGIIASQSVGEPST 1203
Query: 592 QMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAK 651
QMTLNTFHFAG G NVTLGIPR+REI+M A+ AIKTP M +P L D+ +++A+ +K
Sbjct: 1204 QMTLNTFHFAGHGAANVTLGIPRMREIIMTASAAIKTPQMTLPILDDVS--DQQADTFSK 1261
Query: 652 SMTRITMADVLEKVKIKEWLEISPEPHMN---YQMKFCFIPAHMYRDKTSVKPSKIIDHF 708
S++++ +++V++KV + E S + H Y + F Y ++ V ++ +
Sbjct: 1262 SISKVLLSEVIDKVTVTETSGTSGKSHSASRAYVVNVKFFDEKEYSEEYDVSKEELQEVI 1321
Query: 709 ERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRVD----V 764
FL LE AI K +V + G G A+ +
Sbjct: 1322 HTNFLHSLEAAIIK--------------------EVRKQKKLGGPDVGVAVPVIQEVAPA 1361
Query: 765 SSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEE----RMSEREEDDNTSNIGERFKI--- 817
SS + ++ D + HKK Q +EEP+ +E R +E+ D+ N +
Sbjct: 1362 SSKKSEEDNDEEEYHKKTKQSVS--YEEPDADEIETMRQAEKSSDEEELNSDMESQSSES 1419
Query: 818 -----------EFRDSTNVFVKDVVN-----------QHNIVHKYSYDKKNHMWC----- 850
+FR + + K++ N H + KY++D WC
Sbjct: 1420 EHEEKDIDMDNDFRSAIDEANKNMTNTQRDRQSGVIAAHRYITKYNFDDAEGKWCEFKVE 1479
Query: 851 ------KLLFLPSNLFEE---------------------KESKHLLKTDGINVNFISQYR 883
KLL + N+ E+ + K +L T+G+N +
Sbjct: 1480 LSVDTEKLLMV--NIVEDICRKSIINQVPHIDRCVHPEPENGKRVLVTEGVNFQAMWDQE 1537
Query: 884 HLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSG 943
+D++ + ND+ + YG+EAA I+ E+ NVF Y I V RHL L+AD MT G
Sbjct: 1538 DFIDVDGITSNDVSAVLKVYGVEAARNTIVNEISNVFGRYAISVSFRHLDLIADMMTRQG 1597
Query: 944 TYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGL 1003
TY+A NR G+ + S + KM++E + + +A + ++L +PSAR+++G+ GTG
Sbjct: 1598 TYLAFNRQGMETSTSSLMKMSYETTCQFLTKAVLDHERENLDSPSARIVVGKLNNVGTGS 1657
Query: 1004 FQL 1006
F +
Sbjct: 1658 FDI 1660
>gi|170090758|ref|XP_001876601.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648094|gb|EDR12337.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 1711
Score = 622 bits (1604), Expect = e-175, Method: Compositional matrix adjust.
Identities = 401/1083 (37%), Positives = 574/1083 (53%), Gaps = 132/1083 (12%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
+H +AEA + N +QYLVP G+PL GLIQDHV++G ++ +D F TR EY L+Y A
Sbjct: 671 NHVARAEAMMIANTDNQYLVPTSGNPLRGLIQDHVVAGVWMTCQDAFFTREEYCQLLYGA 730
Query: 69 LC----ILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKK 124
L + TLPPTIWKP P+WTGKQ++STV+ N+TPK G+
Sbjct: 731 LRPEEESRGARLVTLPPTIWKPKPMWTGKQIISTVLKNITPKP---------FEGLSLNA 781
Query: 125 QFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLS 184
+ Y + V GELL G+LDK FG+T YGLVH+V++ +GA+ A LL
Sbjct: 782 KTKVPGYLWGADSKEDQVVFMDGELLCGVLDKAAFGATDYGLVHSVYELYGADVAGRLLG 841
Query: 185 CLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPE 244
L++LFT +LQ FT + D+++ E D KR +I + LGTE A L + P+
Sbjct: 842 VLSRLFTKFLQHRAFTCRMDDLILTPEGDGKRNDLIKRGENLGTEGAIENFP-SLSSTPK 900
Query: 245 I-ISSQLQEAYASI---PQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFM 300
+ I+++L + A +D K+ L K+T++I+ +CLP GL+ FP N++Q M
Sbjct: 901 LEIAAELTTLLEDVLRDDNKMAGLDVTVKTKLSKLTSSISDICLPNGLLRKFPFNHMQTM 960
Query: 301 VESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMT 360
SGAKGS VN QISC LGQ ELEG+R +MVSG+TLPSF +E AGG+V RF+T
Sbjct: 961 TLSGAKGSAVNARQISCALGQQELEGRRVPVMVSGKTLPSFKAFETKAIAGGYVVSRFLT 1020
Query: 361 GIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQV 420
GI+PQEF+FHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEG+ VHYD TVR SD S+ Q
Sbjct: 1021 GIKPQEFYFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGIRVHYDHTVRGSDNSIYQF 1080
Query: 421 LYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGK 480
YG DGLDVT++++L QF F+ N +SLA + + +
Sbjct: 1081 AYGGDGLDVTRQKHLY--QFGFIVQN-----------------QISLARHI----RPADI 1117
Query: 481 PNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLA 540
N + + +L++ DK + R K+ P +S + P + GS SE A
Sbjct: 1118 QNVVDESTAISYMKKVLKRSPDRPDKNKPAKRDKY----DPALSLYSPSRYLGSTSEQFA 1173
Query: 541 DSVVKYT-----------------KGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAA 583
+V Y K RT H F ++ K + SL +PGE VG+LA+
Sbjct: 1174 IAVDNYVKTNPHNLLAEKEDEVRFKSRTPPLHPRNFRLLMNVKYMKSLVDPGEAVGLLAS 1233
Query: 584 QSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLE 643
Q +GEPSTQMTLNTFHFAG G NVTLGIPRLREI+M A++ KTPSM + PD+
Sbjct: 1234 QGVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTASQKPKTPSMTMKVRPDI--TA 1291
Query: 644 KKANRLAKSMTRITMADVLEKVKIKEWLEISPEP-HMNYQMKFCFIPAHMYRDKTSVKPS 702
+ K +R+T+A ++E V++KE L + E + ++ F P Y+ + V+PS
Sbjct: 1292 EDITLFCKRASRVTLAQIVENVEVKEQLRVEGETRRTQFTIEIKFFPKVEYQAEYDVEPS 1351
Query: 703 KIIDHFERKF-----------LKELEVAIAKRAAQ---GLKNMNIEQSRDQMEDDVE--- 745
+I+ F KF +K+L+ + + A+ G K + E DD E
Sbjct: 1352 EILAVFATKFPLTLKREMQNEMKKLDADLKSQIAELGKGKKAKSREGDDGNDGDDDEAPT 1411
Query: 746 ---DDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEE----R 798
DD+ E G G A DE+R + Q+ + + + D E DE+
Sbjct: 1412 KRKDDDEESEAGDGGA-------DDEKRARQKKQQATYESDDSDVEDAEAFNDEDIEAAY 1464
Query: 799 MSEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVH--KYSYDKKNHMW------- 849
E E + + ++ + + + + D+ H + H + +D+ ++
Sbjct: 1465 APETEAMELDAKPAKKDRAQSLKALISRMSDLFQGH-LPHATSFEFDESRCVFQLEFRLD 1523
Query: 850 -CKLLFLP-----------------SNLFEEKESKH---LLKTDGINVN-----FISQYR 883
KLLF+ + F+ K+ K L T+G N +S
Sbjct: 1524 MPKLLFVGIVERTCRATIVREIPGITECFQAKDEKKGDITLTTNGSNFRGMWEFAVSSDE 1583
Query: 884 HLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSG 943
+L+ +++Y NDI+ + TYG+E A I+RE+ +F Y I+VD RHL L+ADYMT G
Sbjct: 1584 SILEDDEIYSNDIYAILKTYGVEMARAAILREMGGIFGAYNIQVDRRHLELIADYMTFDG 1643
Query: 944 TYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGL 1003
Y NR GI NPS + K ++E + A++ G D L PS ++LG+ GTG+
Sbjct: 1644 GYKPFNRKGISTNPSPLLKASYETTGAFLSDATLYGDFDDLSTPSGNIVLGRPNCTGTGV 1703
Query: 1004 FQL 1006
F +
Sbjct: 1704 FDV 1706
>gi|339237703|ref|XP_003380406.1| RNA polymerase Rpb1, domain 5 superfamily [Trichinella spiralis]
gi|316976752|gb|EFV59978.1| RNA polymerase Rpb1, domain 5 superfamily [Trichinella spiralis]
Length = 1728
Score = 622 bits (1603), Expect = e-175, Method: Compositional matrix adjust.
Identities = 407/1156 (35%), Positives = 621/1156 (53%), Gaps = 168/1156 (14%)
Query: 1 MDGWTQNASHF-----LKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTF 55
DG NA HF +AE S + +V+ Q+LVPKDG P++GLIQDHV+SG L++RD F
Sbjct: 576 FDGDEMNA-HFPQNEIARAECSEIADVARQFLVPKDGKPIAGLIQDHVVSGFMLTMRDKF 634
Query: 56 LTRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGE 115
LT+ ++ L+ A + R +PPTI+KP+ WTGKQV++T+++N+ P I
Sbjct: 635 LTKEDFNYLLLSAFPSVEHPWRQVPPTIFKPVRRWTGKQVVTTILLNVIPSHLPPI---- 690
Query: 116 LLSGILDKKQFGSTQYGL------VHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHA 169
++ K + + + + + +++V I GELL G+LDK Q G++ YGLVH
Sbjct: 691 ---NLVTKAKTSIKNWTVPGKRNPIFELSESNVVICSGELLCGVLDKAQMGASPYGLVHC 747
Query: 170 VWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTE 229
+++ +G A LLSC ++LFT YLQ GFTLGV DI++ ++ D KR K+++ G+E
Sbjct: 748 IFELYGPAVAAKLLSCFSRLFTTYLQMRGFTLGVEDIMLTRKADSKRRKLLSTVDCCGSE 807
Query: 230 AACNALGLPLDTDPEIISSQLQEA-YASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGL 288
A AL L + + + + L++ + + + ++++ ++ DK + N+VC P GL
Sbjct: 808 AVREALALDVGIEDDEVKLILEKMHFKNEKESLLRVEQCFRQATDKFNDQANKVCFPNGL 867
Query: 289 IEPFPANNLQFMVESGAKGSTV--------NTM-----QISCLLGQIELEGKRPAMMVSG 335
++ FP N L M+E+GAKG++V NTM Q+SC+LGQ++LEG+R + +SG
Sbjct: 868 LKAFPDNGLSLMIETGAKGTSVSKEYISSYNTMRVNFFQMSCMLGQVDLEGQRVKVGMSG 927
Query: 336 RTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCL 395
RTLP F Y+ PRAGGFV RF++G++PQEFFFHC+AGREGLIDTAVKTSRSGYLQRC+
Sbjct: 928 RTLPCFQRYDTKPRAGGFVSQRFLSGVRPQEFFFHCLAGREGLIDTAVKTSRSGYLQRCI 987
Query: 396 VKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKV 455
+KH+EG+ +YD+TVRD+D S+IQ YGEDG DVTK Q+ D +FL NI +
Sbjct: 988 IKHMEGIVANYDLTVRDADGSIIQFYYGEDGFDVTKSQFYDDTHLAFLHANIDVLEQTSG 1047
Query: 456 ILNLLKKHPLSLALLLLLTFK----SSGKPNFIFSPHRTKFTM--------------DLL 497
L + +A K GK + S H+++ + L+
Sbjct: 1048 DLPNFENEDNLIAAKRFSKIKRWKEKYGKCPEVESMHKSQLALLPNVDEDSSTVDKEQLV 1107
Query: 498 EQWYQLDDKARKKY-RKKFKACPQPLISTFQPDAHFGSISENLA---DSVVKYTKGRTDA 553
W++ + R+++ R+ K P P++ST +P G++S+ D+ ++ + R D
Sbjct: 1108 AAWFEYPVEERRRWLRQSVKWRPDPVMSTLRPTTCIGALSDKFLEQLDNFIQQRQARVDE 1167
Query: 554 SHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIP 613
S V KF ++ + + SL PGE VG+LAAQSIGEPSTQMTLNTFHFAG G+MNVTLGIP
Sbjct: 1168 S-VHKFEKLMKLRGMRSLVEPGETVGLLAAQSIGEPSTQMTLNTFHFAGCGEMNVTLGIP 1226
Query: 614 RLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEI 673
RLREIL+ + I TP+ + F + + + A + + M RI + VLE E+ +
Sbjct: 1227 RLREILISGSATISTPTSRVQFRHGVSR--ELAEDVQRRMNRIVLNQVLEFANQMEF--V 1282
Query: 674 SPEPHMNYQMKF------------CFIPAHMYRD-KTSVKPSK---------------II 705
+ + + +Y F YR+ + ++K SK ++
Sbjct: 1283 TTDGYCSYCCTLRTGWYSRLLIDANFFHRAKYREYEITLKLSKRRKRPYSVRHLDSRTVM 1342
Query: 706 DHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRVDVS 765
E+ F + L ++ K G K +E + E++ E +G A G S
Sbjct: 1343 AKIEQGFFRSLCFSLKKMFDSGNKFREVE----MFHIENENEINENEDGLTFAGGNDQDS 1398
Query: 766 SDEERDEE-DAVQSHKKVNQEEDNDFEEPEDEERM-------SEREEDDNTSNIGERFKI 817
S+EE D + DAV++ ++ ++DN++ EDEE + E D+T N GE
Sbjct: 1399 SEEEDDNDVDAVEAQQRQRHKDDNEY-LGEDEEAIELNMFTSGENCLFDSTGNEGESVVQ 1457
Query: 818 EFRDSTNV-----------------FVKDVVNQHNIVHKYSYDKKNHMWCK--------- 851
+ S + VK VV Q +++ Y YD K + WCK
Sbjct: 1458 QNSSSEEIRPGKDDDDDEHLPLDQYRVKMVVEQDSLITDYRYDSKRNHWCKATVKVCSMY 1517
Query: 852 ------LLFLPS-------------------NLFEEKESKHLLKTDGINVN------FIS 880
+ FL S + E+ + L T+GIN+ FI
Sbjct: 1518 DDGCCCIFFLHSLGAIQVWSDRHASVRDIKRCMLTEQNGELFLITEGINLKVLDDEVFIG 1577
Query: 881 QYRHLLDL--NKLYVNDIHYMASTYGIEAA--------NRVIIREVKNVFAVYGIEVDPR 930
++ +L L ++ Y+ I + +TY A NR+ E KNVFA YGIEVD R
Sbjct: 1578 FFKPVLCLLNDRTYLMWIVSIVTTYTPWLACMALRRRLNRLSESETKNVFASYGIEVDHR 1637
Query: 931 HLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSAR 990
HLSL++DYMTH+G Y + +RN + + S QKM+FE + +++A + D+++ PSA
Sbjct: 1638 HLSLLSDYMTHTGKYYSFSRNYMNSSTSPFQKMSFETTVNYMKEALTRRTLDTMQTPSAN 1697
Query: 991 VMLGQECRQGTGLFQL 1006
+++G+ R GTG F +
Sbjct: 1698 LVVGRLPRFGTGFFDV 1713
>gi|331224168|ref|XP_003324756.1| DNA-directed RNA polymerase I subunit A1 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|309303746|gb|EFP80337.1| DNA-directed RNA polymerase I subunit A1 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 1887
Score = 620 bits (1600), Expect = e-175, Method: Compositional matrix adjust.
Identities = 390/1098 (35%), Positives = 575/1098 (52%), Gaps = 153/1098 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
++EA + N +QYLVP G+PL GLIQDHV+SG ++ +DTF TR +Y ++Y AL
Sbjct: 835 QSEARMIANNDNQYLVPTSGNPLRGLIQDHVVSGVWMTNKDTFFTRDDYYQIIYGALRPE 894
Query: 73 NT-----EIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
+ T+PPTIWKP+P+WTGKQ++ST++ N+TP + + S + K +G
Sbjct: 895 GNYSGQGRVVTVPPTIWKPVPMWTGKQLISTIMKNITPLNASGLNL--FSSSKVRGKSWG 952
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
+ G + HVT G+L+ G++DK Q G++ YGLVH+V+D +GA+ A LL L+
Sbjct: 953 TQHTG------EEHVTFMDGDLIQGVIDKSQIGASPYGLVHSVYDLYGADIAGKLLGILS 1006
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEI-- 245
+LFT +LQ FT + D+ + + D R+K+I++ + G A + +GL ++ E
Sbjct: 1007 RLFTKFLQHRAFTCRMDDLQLTKRGDEMRSKLISETSQRGIRATLSTIGL---SEKEAKT 1063
Query: 246 ------ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQF 299
+ ++LQE + A +D Y + IN CLP GL +PFP NN+Q
Sbjct: 1064 PHGMIDLENRLQEVLRDDMKM-AALDNAYSGENSSLQTAINNQCLPSGLAKPFPWNNMQM 1122
Query: 300 MVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFM 359
M SGAKG+ VN QISCLLGQ LEG+R +MVSG+TLPSF +E +PRAGGFV RF+
Sbjct: 1123 MTSSGAKGTPVNASQISCLLGQQALEGRRVPVMVSGKTLPSFRAFETAPRAGGFVAQRFL 1182
Query: 360 TGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQ 419
TGI+PQE++FHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEG+ VHYD TVR+SD S++Q
Sbjct: 1183 TGIRPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGVRVHYDHTVRNSDSSILQ 1242
Query: 420 VLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSG 479
YG+D LDVTK+++L FS + + +L+ +
Sbjct: 1243 FHYGDDSLDVTKQKHLNQFDFSLMNRS-----------SLITR----------------- 1274
Query: 480 KPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENL 539
F+P R +D D+ K +K ++ P P +S F P HFGSISE
Sbjct: 1275 -----FNPSRIAGQVDCTTANDHT-DRIVKAIKKGVRSLPPPTLSLFSPSRHFGSISEKF 1328
Query: 540 ADSVVKYT---------------------KGRTDASHVDKFYDMIFYKNLLSLANPGENV 578
A V Y + D +D F ++ + ++ L +PGE V
Sbjct: 1329 AVDVEAYKNLNPLQVLKSKKSIRKTWPVYRKSDDLVSMDIFSSLMHVRFMMGLVDPGEAV 1388
Query: 579 GVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPD 638
G+LAAQ +GEPSTQMTLNTFHFAG G NVTLGIPRLREI+M A+ IKTP+M+ P P+
Sbjct: 1389 GLLAAQGVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTASANIKTPTMKFPIRPE 1448
Query: 639 MPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEI---SPEPHMNYQMKFCFIPAHMYRD 695
+ +++ R K R+ ++ V+++V + E L+ + + Y+++ PA Y
Sbjct: 1449 V--TDEQFERFIKQTARLYLSQVVDQVLVTERLKRNGNNAQISKVYEIRLQLYPAEEYCR 1506
Query: 696 KTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGA 755
+ S+ + + F+ LE I + ++ I+ + +G G
Sbjct: 1507 EYSINVPAVFKSIAKVFVPMLERMITRELKTLQSDLKIQLAEIGKGKSSSSRKGPGNGAN 1566
Query: 756 GAALGRVDVSS---DEERDEEDAVQSHKKVNQEEDNDFEE---PEDEERMSEREEDDNTS 809
G+ G DV + DE E+ K+ Q + D+++ D + SE D+
Sbjct: 1567 GSEDGEEDVPARRVDEADIEDGDAYDEKRARQRGELDYDKDGVESDSDAESEVMNDEKLR 1626
Query: 810 NIGERFK--------------------------IEFRDSTNVFVKDVVNQ-HNIVHKYSY 842
+ K +E S + D V Q + V+ +
Sbjct: 1627 KMTGASKTREDRDSDDDSSSSSADSDDARSLEELEISQSDAEELADEVQQLSHYVNSIEF 1686
Query: 843 DKKNHMWCKL-LFLPSN--------LFEEKESKHLLK-TDGINVNFISQY---------- 882
D+ +C+L + PS+ L EE + +++ GI +SQ
Sbjct: 1687 DRHGG-YCQLSMQFPSSSTKLLLVGLIEESCRRAVIQEIKGIARTLVSQSDDKNKERRFG 1745
Query: 883 --------------RHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 928
++++L++LY NDI+ M TYG+EAA II+E+ VF VYGI VD
Sbjct: 1746 MTEGANLIAAWDFGHNIIELDELYSNDINAMLKTYGVEAARSSIIKEISGVFNVYGISVD 1805
Query: 929 PRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPS 988
RHL+++ADYMT G Y NR+G+ N S K ++E + A++ G D+L PS
Sbjct: 1806 YRHLTVIADYMTSEGRYKPFNRSGLSNNVSPFLKASYETTATILTDATIFGDFDNLLNPS 1865
Query: 989 ARVMLGQECRQGTGLFQL 1006
A ++LGQ GT F +
Sbjct: 1866 ASIVLGQPPMTGTNSFDV 1883
>gi|190347356|gb|EDK39611.2| hypothetical protein PGUG_03709 [Meyerozyma guilliermondii ATCC 6260]
Length = 1632
Score = 620 bits (1599), Expect = e-174, Method: Compositional matrix adjust.
Identities = 394/1062 (37%), Positives = 572/1062 (53%), Gaps = 120/1062 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
K+EA L N SQYL P GSPL GLIQDH+ +G L+ +D+F TR Y L+Y CI
Sbjct: 617 KSEALNLANTDSQYLTPTSGSPLRGLIQDHISAGVWLTNKDSFFTREIYQQLIYG--CIR 674
Query: 73 -------NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQ 125
++ I T+PPTI KP PLWTGKQV++T+++N+ PK+ + + K +
Sbjct: 675 PEDGHTSHSRILTVPPTIIKPEPLWTGKQVITTILLNIKPKNVPGV-------NLTSKNK 727
Query: 126 FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSC 185
+ +G+ A + V R+GELL GILDK Q+G++Q+G+VH++ + +G + A LS
Sbjct: 728 IKNEYWGV--ASQENEVLFRNGELLCGILDKSQYGASQFGIVHSLHEVYGPDVAGKALSV 785
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL---PLDTD 242
L +LFT Y+ FT G+ D+ + E + R I+ K+ +G AA L TD
Sbjct: 786 LGRLFTNYIMMTAFTCGMDDLRLTAEGNEWRKDILKKSVDIGRVAAAEVTNLDPTTSSTD 845
Query: 243 PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
E+I + E +D +S ++ +T+ + C+PEG ++ FP N++Q M
Sbjct: 846 SELI--KRLEGILRDENNAGILDAVTQSKVNAITSQVVSKCIPEGTMKRFPYNSMQAMAL 903
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
SGAKGS VN QI CLLGQ LEG+R +MVSG+TLPSF PYE RAGG++ GRF +GI
Sbjct: 904 SGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPYETDARAGGYIKGRFYSGI 963
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
+PQE++FHCMAGREGLIDTAVKTSRSGYLQRCL K LEG+ V YD +VRD D +LIQ LY
Sbjct: 964 RPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVAYDNSVRDGDGTLIQFLY 1023
Query: 423 GEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLL----LLTFKSS 478
G D +D TK+ ++ QF F +N + L K +P L L L +
Sbjct: 1024 GGDSIDTTKQSHMN--QFKFCVENYDAL--------LTKYNPGDLTHHLNTDEALHYAKK 1073
Query: 479 GKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISEN 538
+ N + + + EQ Y+ D P++S + P + GS+SE
Sbjct: 1074 VRKN-----QKKQAGLPHYEQAYKYD----------------PVLSVYNPAKYLGSVSEK 1112
Query: 539 LADSVVKYTKGRTD----ASHVD--KFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQ 592
+ + + D +S + KF ++ K + SL NPGE+VG++A+QS+GEPSTQ
Sbjct: 1113 FQERLEAFVSDNADLFKKSSGISEKKFRALMQLKYMRSLINPGESVGIIASQSVGEPSTQ 1172
Query: 593 MTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKS 652
MTLNTFHFAG G NVTLGIPR+REI+M A+ AIKTP M +P L D+ + +A+ KS
Sbjct: 1173 MTLNTFHFAGHGAANVTLGIPRMREIIMTASAAIKTPQMNLPILDDVN--DAQADAFCKS 1230
Query: 653 MTRITMADVLEKVKIKEWLEISPEPHM-NYQMKFCFIPAHMYRDKTSVKPSKIIDHFERK 711
+ R+ +++ L++V + E E + +Y +K F Y ++ V +
Sbjct: 1231 VARVVLSEFLDRVVVTETTGSDGEENSRSYNVKLRFYHCSEYEEEYDVSRQHLEHVVSTV 1290
Query: 712 FLKELEVAIAK-----RAAQGL---------KNMNIEQSRDQMEDDVEDDEGEGAEGAGA 757
FL LE I+K R A+ L N + ++ +E+D EDDE +
Sbjct: 1291 FLDALESQISKEVKKHRKAESLPTVGKAVSKSNTDFSIAKPSLEEDGEDDESSEKRNSKQ 1350
Query: 758 ALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNTSNIGERFKI 817
A+ + DE A +S ++ E +D DEE SE EE +++ E
Sbjct: 1351 AVSYEEPDDDEIETMRKAEESSEEEMDESSDDRSSSSDEEEDSEDEEKKPSASQSEPLSK 1410
Query: 818 EFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC-----------KLLFLPSNLFEEKESK 866
RD DV++ HN+V KY++D N WC KLL + N+ E+ K
Sbjct: 1411 AARDRQ----MDVISSHNMVTKYNFDDTNGEWCEFDLRLYGESQKLLMV--NIIEDMCRK 1464
Query: 867 ----------------------HLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYG 904
+L T+G+N + ++ +D+NK+ NDI + TYG
Sbjct: 1465 VVVREVPRIGRCVRPQPDAGGARVLTTEGVNFGAMWEHDDFIDVNKITSNDIAAVLKTYG 1524
Query: 905 IEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMT 964
+EAA I+ E+ NVF Y I V RHL L+ D MT GTY+A NR GI + S KM+
Sbjct: 1525 VEAARNTIVNEINNVFDRYAISVSSRHLDLIGDMMTREGTYLAFNRQGIDSSTSAFMKMS 1584
Query: 965 FEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+E + + +A + G + L +PSA++++G+ GTG F +
Sbjct: 1585 YETTCQFLTKAVLDGTTEDLESPSAQIVVGKLSNVGTGSFDV 1626
>gi|242012717|ref|XP_002427074.1| DNA-directed RNA polymerase I largest subunit, putative [Pediculus
humanus corporis]
gi|212511332|gb|EEB14336.1| DNA-directed RNA polymerase I largest subunit, putative [Pediculus
humanus corporis]
Length = 1659
Score = 620 bits (1599), Expect = e-174, Method: Compositional matrix adjust.
Identities = 340/788 (43%), Positives = 487/788 (61%), Gaps = 44/788 (5%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
++E ++NV++ YLVPKDG+PL GLIQDH++S +L++++ + +Y LVYQ L
Sbjct: 562 RSEGYNIVNVANHYLVPKDGTPLGGLIQDHIVSTVRLTMKNQMFEKEDYHQLVYQGLSHK 621
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHG-------ELLSGILDKKQ 125
N I LPP I KP LW+GKQ++ST++IN+ PKDK +I +L +K
Sbjct: 622 NGNIILLPPCIVKPKKLWSGKQIISTILINIIPKDKDLISFNGNAKISVKLWETGSPRKW 681
Query: 126 FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSC 185
++ + + ++ + +R G L++G+LDK+ FG+T +GL H +++ +G E + L+
Sbjct: 682 MCGEEFKSDNEMSESSIILRKGILVTGVLDKQHFGATPFGLTHCLYELYGGECSSKFLNS 741
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEI 245
+ +L T +LQ GFTLGV DILV+ + D+ R KII K R+ G E A ALGL + P
Sbjct: 742 IGRLSTAFLQMTGFTLGVEDILVKAKADKSRKKIIEKLRKCGDEIAAKALGL--EEIPND 799
Query: 246 ISSQLQ-EAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESG 304
+ +L+ E + + F+ ++D++YK L+ TN IN+VCLP+GLI FP NNLQ MV SG
Sbjct: 800 LYERLEREYFKNRTMFKGKLDQEYKVKLNSFTNEINKVCLPKGLISRFPENNLQLMVTSG 859
Query: 305 AKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQP 364
AKGSTVNTMQISCLLGQIELEGKRP M+SG++LPS+ ++ P AGG++D RFMTGI P
Sbjct: 860 AKGSTVNTMQISCLLGQIELEGKRPPFMISGKSLPSYKAFDTQPCAGGYIDNRFMTGISP 919
Query: 365 QEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGE 424
QEFFFHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEG+++ YD TVRD D ++IQ +YG
Sbjct: 920 QEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGVSIGYDGTVRDHDGTVIQFIYGG 979
Query: 425 DGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHP----------------LSLA 468
DGL+V K + FL +N+ + VI +L P LS
Sbjct: 980 DGLEVQKSTFFKPTHMEFLHNNLNAVVKKSVIESLKADVPYKKIEAYREEVMAGINLSKK 1039
Query: 469 LLLLLTFKSSGKPNFIFSPH---------RTKFTMDLLEQWYQLDDKARKKYRKKFKACP 519
+L T S N I + + RTK +L++W L D+ ++ Y+++ +
Sbjct: 1040 VLAPFTSFSQSIKNDIRNKYFTKLDKRTGRTKAYSKMLKKWNALADEDKQLYKQEVRL-- 1097
Query: 520 QPLISTFQPDAHFGSISENLADSVVKYTKGRT---DASHVDKFYDMIFYKNLLSLANPGE 576
P+ S + + FG I+E L + Y + K +M+ K +LSL PGE
Sbjct: 1098 DPVTSKYNRNHDFGVITEKLETLIKDYLDAKCSNQSKKEKKKVKNMVEAKYMLSLCQPGE 1157
Query: 577 NVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPF- 635
VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVTLGIPRLREILM A+K+IKTP +++P
Sbjct: 1158 PVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMTASKSIKTPYVDVPLK 1217
Query: 636 LPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCFIPAHMYRD 695
K+ K N+L K R+T+ADVLE + + E + P P Y ++F F+P Y+D
Sbjct: 1218 KKSEKKMLKNGNKLKKIFQRVTLADVLETITVHEKVIFKPSPLFTYTIRFKFLPHSFYKD 1277
Query: 696 KTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQM--EDDVEDDEGEGAE 753
+KP ++++ E+ FL L I ++ ++ ++ E ++M ++D E D+ + +
Sbjct: 1278 DYLIKPKDVLEYVEKPFLILLCKEI-RKLSKKFGDIIFESKEEKMISKEDEEKDDADNVD 1336
Query: 754 GAGAALGR 761
AG +
Sbjct: 1337 SAGVNFNK 1344
>gi|401623429|gb|EJS41527.1| rpa190p [Saccharomyces arboricola H-6]
Length = 1667
Score = 619 bits (1597), Expect = e-174, Method: Compositional matrix adjust.
Identities = 388/1083 (35%), Positives = 580/1083 (53%), Gaps = 158/1083 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCI- 71
+AEA L N SQYL P GSP+ GLIQDH+ +G L+ +D+F TR +Y +Y CI
Sbjct: 646 RAEALNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQYQQYIYG--CIR 703
Query: 72 ------LNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQ 125
++I TLPPTI+KP PLWTGKQ+++TV++N+TP D I ++ K +
Sbjct: 704 PEDGHTTRSKIVTLPPTIFKPYPLWTGKQIITTVLLNITPPDMPGI-------NLISKNK 756
Query: 126 FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSC 185
+G + V + G LL GILDK Q+G+++YG+VH++ + +G E A +LS
Sbjct: 757 IKDEYWG--KGSTENEVIFKDGALLCGILDKSQYGASKYGIVHSLHEVYGPEVAAKILSI 814
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDT---D 242
L +LFT Y+ T G+ D+ + E ++ RT I+ + G +AA L DT D
Sbjct: 815 LGRLFTNYITATAVTCGMDDLRLTDEGNKWRTDILKTSVDTGRQAAAEVTNLDKDTPADD 874
Query: 243 PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
E++ +LQE + +D S ++ +T+ + C+P+G ++ FP N++Q M
Sbjct: 875 LELLK-RLQEILRDNNK-SGILDAVTSSKVNVITSQVVSKCVPDGTMKKFPYNSMQAMAL 932
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
SGAKGS VN QI CLLGQ LEG+R +MVSG+TLPSF PYE AGG+V GRF +GI
Sbjct: 933 SGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPYETDAMAGGYVKGRFYSGI 992
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
+PQE++FHCMAGREGLIDTAVKTSRSGYLQRCL K LEG+ V YD ++RD+D +L+Q +Y
Sbjct: 993 KPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSIRDADGTLVQFMY 1052
Query: 423 GEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPN 482
G D +D+TK ++T QF F DN LLKK+ S AL+ L +S+
Sbjct: 1053 GGDAVDITKESHMT--QFEFCLDN---------YYALLKKYNPS-ALIEHLDVESA---- 1096
Query: 483 FIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADS 542
K++ L+ Y+ Y++ K P+++ + P + GS+SEN D
Sbjct: 1097 -------LKYSKKTLK--YRRKHSKEPHYKQSVKY--DPVLAKYNPAKYLGSVSENFQDK 1145
Query: 543 VVKYTKGRT------DASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLN 596
+ + + D + KF ++ K + SL NPGE VG++A+QS+GEPSTQMTLN
Sbjct: 1146 LESFLDKNSKLFKSADGVNEKKFRALMQLKYMRSLINPGEAVGIIASQSVGEPSTQMTLN 1205
Query: 597 TFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRI 656
TFHFAG G NVTLGIPRLREI+M A+ AIKTP M +P D+ +++A+ KS++++
Sbjct: 1206 TFHFAGHGAANVTLGIPRLREIVMTASAAIKTPQMTLPIWDDVS--DEQADTFCKSISKV 1263
Query: 657 TMADVLEKVKIKEWLEISPEPHMN----YQMKFCFIPAHMYRDKTSVKPSKIIDHFERKF 712
+++V++KV + E S N Y + F Y ++ V ++ + +F
Sbjct: 1264 LLSEVIDKVIVTETTGTSNTAGGNAARSYVIHMRFFDNSEYSEEYDVSKEELQNVVSTQF 1323
Query: 713 LKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRV--DVSS---- 766
+ LE AI K I++ + DV G A+ R+ DV+S
Sbjct: 1324 MHLLEAAIVKE---------IKKQKRTTGPDV-----------GVAVPRLQTDVASNSSN 1363
Query: 767 ----DEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNTSNIG---------- 812
+E+ DEE QSHKK Q ++EP+++E + RE + ++ G
Sbjct: 1364 SKKLEEDNDEE---QSHKKTKQAV--SYDEPDEDEIETMREAEKSSDEEGVDSDKESDSD 1418
Query: 813 ----------ERFKIEFRDSTNVFVK-------DVVNQHNIVHKYSYDKKNHMWC----- 850
E ++ N K +++ + KY++D ++ WC
Sbjct: 1419 SDEDEDVDMNEEINKTIAEANNNMSKVQRDRQSAIISHQRFITKYNFDDESGKWCEFKLE 1478
Query: 851 ------KLLFLPSNLFEE---------------------KESKHLLKTDGINVNFISQYR 883
KLL + N+ EE + K +L T+G+N +
Sbjct: 1479 LAAETEKLLMV--NIVEEICRKSIIRQVPRIDRCVHPEPEHGKRVLVTEGVNFQAMWDQE 1536
Query: 884 HLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSG 943
+D++ + ND+ + TYG+EAA I+ E+ NVF+ Y I V RHL L+AD MT G
Sbjct: 1537 AFIDVDGITSNDVAAVLRTYGVEAARNTIVNEINNVFSRYAISVSFRHLDLIADMMTRQG 1596
Query: 944 TYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGL 1003
TY+A NR G+ + S KM++E + + +A + + L +PSAR+++G GTG
Sbjct: 1597 TYLAFNRQGMETSTSSFMKMSYETTCQFLTKAVLDNEREQLDSPSARIVVGNLNNVGTGS 1656
Query: 1004 FQL 1006
F +
Sbjct: 1657 FDV 1659
>gi|367004368|ref|XP_003686917.1| hypothetical protein TPHA_0H02800 [Tetrapisispora phaffii CBS 4417]
gi|357525219|emb|CCE64483.1| hypothetical protein TPHA_0H02800 [Tetrapisispora phaffii CBS 4417]
Length = 1648
Score = 619 bits (1596), Expect = e-174, Method: Compositional matrix adjust.
Identities = 385/1072 (35%), Positives = 574/1072 (53%), Gaps = 147/1072 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCI- 71
+AEA L N SQYL P GSP+ GLIQDH+ +G L+ +D++ TR +Y +Y CI
Sbjct: 638 RAEAFNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSYFTREQYQQYIYG--CIR 695
Query: 72 ------LNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGI-LDKK 124
N ++ T+PP I KP+PLWTGKQ+++TV++N++P D + GI L K
Sbjct: 696 PEDGHSANNKLLTIPPAIIKPVPLWTGKQIITTVLLNVSPVD---------MPGINLKSK 746
Query: 125 QFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLS 184
+Y H+ + V + G LL GILDK Q+G+++YG+VHA+ + +G E A +LS
Sbjct: 747 NKIKDEYWGQHS-EENEVLFKDGALLCGILDKSQYGASKYGIVHALQEVYGPEVAAKVLS 805
Query: 185 CLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDT--- 241
L +LFT Y+ FT G+ D+ + E ++ RT I+ + G +AA L DT
Sbjct: 806 VLGRLFTNYITNTAFTCGMDDLRLTDEGNKWRTDILKTSVDRGRQAAVEVTNLEKDTSAD 865
Query: 242 DPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMV 301
D E++ +L+E + +D S ++ +T+ + C+P G ++ FP N++Q M
Sbjct: 866 DSELLK-RLEEILRDDNK-SGILDAVTSSKVNAITSQVVSKCVPGGTMKRFPENSMQSMA 923
Query: 302 ESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTG 361
SGAKGS VN QI CLLGQ LEG+R +MVSG+TLPSF P+E AGG++ GRF +G
Sbjct: 924 LSGAKGSNVNVSQIMCLLGQQALEGRRVPIMVSGKTLPSFKPFETDAMAGGYIKGRFYSG 983
Query: 362 IQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVL 421
I+PQE++FHCMAGREGLIDTAVKTSRSGYLQRCL K LEG+ V YD TVRD D +LI+ L
Sbjct: 984 IKPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNTVRDGDGTLIEFL 1043
Query: 422 YGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKP 481
YG D +DVTK Y+ QF F DN +LLK++ + AL+ L S+ K
Sbjct: 1044 YGGDAVDVTKESYMN--QFDFCLDNYD---------SLLKRYNPA-ALIDFLDVDSALK- 1090
Query: 482 NFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQ--------PLISTFQPDAHFG 533
+K T+ K+RKK K P P+++ + P + G
Sbjct: 1091 -------YSKKTL---------------KHRKKNKNVPHYLQNIKYDPVLAKYNPAKYLG 1128
Query: 534 SISENLADSVVKYTKGRTD--ASHVD----KFYDMIFYKNLLSLANPGENVGVLAAQSIG 587
S+SE D + + + SH KF ++ K + SL NPGE VG++A+QS+G
Sbjct: 1129 SVSEKFQDKLENFLDSNSQLFKSHKSVNEKKFRALMQLKYMRSLINPGEAVGIIASQSVG 1188
Query: 588 EPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKAN 647
EPSTQMTLNTFHFAG G NVTLGIPR+REI+M A+ AIKTP M +P L D+ + +A+
Sbjct: 1189 EPSTQMTLNTFHFAGHGAANVTLGIPRMREIIMTASAAIKTPQMTLPILDDV--TDDQAD 1246
Query: 648 RLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDH 707
AKS++++ +++V++ V + E + +Y + F Y ++ + ++ +
Sbjct: 1247 IFAKSISKVILSEVIDSVSVT---ETTTSQSRSYVISMKFYEQDEYNEEYDISKEELQNV 1303
Query: 708 FERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRVDVSSD 767
FL LE+AI K I++ + DV G A AL V+ S
Sbjct: 1304 VANNFLTSLEIAIHKE---------IKKQKKTTASDV----GIAIPKAQLALAAVEGLSS 1350
Query: 768 EERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNTSNIGERFKIEFR------- 820
+ ++ D QS KK Q D + ++ E M E E+ + +G +
Sbjct: 1351 KVMEDNDEEQSRKKTKQAVSYDEPDEDEIETMREAEKSSDEDAMGSDKDSDSSDDESESD 1410
Query: 821 ----------DSTNVFVKD----VVNQHNIVHKYSYDKKNHMWC-----------KLLFL 855
+ N +D +++ H V KY++D + WC KLL +
Sbjct: 1411 EEIEKETTPIKTLNKSQRDRQSAIISNHKFVTKYNFDDETGRWCEFRLELAADTEKLLMV 1470
Query: 856 PSNLFEE---------------------KESKHLLKTDGINVNFISQYRHLLDLNKLYVN 894
N+ E+ + K +L T+G+N + + ++++ + N
Sbjct: 1471 --NIVEDVCRKSVVRQVPNIDRCVHPNAENGKRVLVTEGVNFQAMWEQNDFVNVDGITSN 1528
Query: 895 DIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIR 954
D+ + TYG+EAA I+ E+ NVF+ Y I V RHL L+AD MT G+Y+A NR G+
Sbjct: 1529 DVSSVLKTYGVEAARNTIVNEINNVFSRYAISVSFRHLDLIADMMTRQGSYLAFNRQGME 1588
Query: 955 LNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+ S + KM++E + + +A + + L +PSAR++LG+ GTG F +
Sbjct: 1589 TSTSSLMKMSYETTCQFLTKAVLDNEREELNSPSARIVLGKLNNVGTGAFDV 1640
>gi|146416717|ref|XP_001484328.1| hypothetical protein PGUG_03709 [Meyerozyma guilliermondii ATCC 6260]
Length = 1632
Score = 619 bits (1596), Expect = e-174, Method: Compositional matrix adjust.
Identities = 394/1062 (37%), Positives = 572/1062 (53%), Gaps = 120/1062 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
K+EA L N SQYL P GSPL GLIQDH+ +G L+ +D+F TR Y L+Y CI
Sbjct: 617 KSEALNLANTDSQYLTPTSGSPLRGLIQDHISAGVWLTNKDSFFTREIYQQLIYG--CIR 674
Query: 73 -------NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQ 125
++ I T+PPTI KP PLWTGKQV++T+++N+ PK+ + + K +
Sbjct: 675 PEDGHTSHSRILTVPPTIIKPEPLWTGKQVITTILLNIKPKNVPGV-------NLTSKNK 727
Query: 126 FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSC 185
+ +G+ A + V R+GELL GILDK Q+G++Q+G+VH++ + +G + A LS
Sbjct: 728 IKNEYWGV--ASQENEVLFRNGELLCGILDKSQYGASQFGIVHSLHEVYGPDVAGKALSV 785
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL---PLDTD 242
L +LFT Y+ FT G+ D+ + E + R I+ K+ +G AA L TD
Sbjct: 786 LGRLFTNYIMMTAFTCGMDDLRLTAEGNEWRKDILKKSVDIGRVAAAEVTNLDPTTSSTD 845
Query: 243 PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
E+I + E +D +S ++ +T+ + C+PEG ++ FP N++Q M
Sbjct: 846 SELI--KRLEGILRDENNAGILDAVTQSKVNAITSQVVSKCIPEGTMKRFPYNSMQAMAL 903
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
SGAKGS VN QI CLLGQ LEG+R +MVSG+TLPSF PYE RAGG++ GRF +GI
Sbjct: 904 SGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPYETDARAGGYIKGRFYSGI 963
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
+PQE++FHCMAGREGLIDTAVKTSRSGYLQRCL K LEG+ V YD +VRD D +LIQ LY
Sbjct: 964 RPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVAYDNSVRDGDGTLIQFLY 1023
Query: 423 GEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLL----LLTFKSS 478
G D +D TK+ ++ QF F +N + L K +P L L L +
Sbjct: 1024 GGDSIDTTKQSHMN--QFKFCVENYDAL--------LTKYNPGDLTHHLNTDEALHYAKK 1073
Query: 479 GKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISEN 538
+ N + + + EQ Y+ D P++S + P + GS+SE
Sbjct: 1074 VRKN-----QKKQAGLPHYEQAYKYD----------------PVLSVYNPAKYLGSVSEK 1112
Query: 539 LADSVVKYTKGRTD----ASHVD--KFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQ 592
+ + + D +S + KF ++ K + SL NPGE+VG++A+QS+GEPSTQ
Sbjct: 1113 FQERLEAFVSDNADLFKKSSGISEKKFRALMQLKYMRSLINPGESVGIIASQSVGEPSTQ 1172
Query: 593 MTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKS 652
MTLNTFHFAG G NVTLGIPR+REI+M A+ AIKTP M +P L D+ + +A+ KS
Sbjct: 1173 MTLNTFHFAGHGAANVTLGIPRMREIIMTASAAIKTPQMNLPILDDVN--DAQADAFCKS 1230
Query: 653 MTRITMADVLEKVKIKEWLEISPEPHM-NYQMKFCFIPAHMYRDKTSVKPSKIIDHFERK 711
+ R+ +++ L++V + E E + +Y +K F Y ++ V +
Sbjct: 1231 VARVVLSEFLDRVVVTETTGSDGEENSRSYNVKLRFYHCLEYEEEYDVSRQHLEHVVSTV 1290
Query: 712 FLKELEVAIAK-----RAAQGL---------KNMNIEQSRDQMEDDVEDDEGEGAEGAGA 757
FL LE I+K R A+ L N + ++ +E+D EDDE +
Sbjct: 1291 FLDALESQISKEVKKHRKAESLPTVGKAVSKSNTDFSIAKPSLEEDGEDDESSEKRNSKQ 1350
Query: 758 ALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNTSNIGERFKI 817
A+ + DE A +S ++ E +D DEE SE EE +++ E
Sbjct: 1351 AVSYEEPDDDEIETMRKAEESSEEEMDESSDDRSSSSDEEEDSEDEEKKPSASQSEPLSK 1410
Query: 818 EFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC-----------KLLFLPSNLFEEKESK 866
RD DV++ HN+V KY++D N WC KLL + N+ E+ K
Sbjct: 1411 AARDRQ----MDVISSHNMVTKYNFDDTNGEWCEFDLRLYGESQKLLMV--NIIEDMCRK 1464
Query: 867 ----------------------HLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYG 904
+L T+G+N + ++ +D+NK+ NDI + TYG
Sbjct: 1465 VVVREVPRIGRCVRPQPDAGGARVLTTEGVNFGAMWEHDDFIDVNKITSNDIAAVLKTYG 1524
Query: 905 IEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMT 964
+EAA I+ E+ NVF Y I V RHL L+ D MT GTY+A NR GI + S KM+
Sbjct: 1525 VEAARNTIVNEINNVFDRYAISVSSRHLDLIGDMMTREGTYLAFNRQGIDSSTSAFMKMS 1584
Query: 965 FEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+E + + +A + G + L +PSA++++G+ GTG F +
Sbjct: 1585 YETTCQFLTKAVLDGTTEDLESPSAQIVVGKLSNVGTGSFDV 1626
>gi|167522056|ref|XP_001745366.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776324|gb|EDQ89944.1| predicted protein [Monosiga brevicollis MX1]
Length = 1592
Score = 619 bits (1596), Expect = e-174, Method: Compositional matrix adjust.
Identities = 387/1053 (36%), Positives = 582/1053 (55%), Gaps = 120/1053 (11%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S F +AEAS + + + QY + G PL GLIQDHVI+ K+ +D+F R Y VY A
Sbjct: 586 SEFARAEASEIASNNFQY-IGLAGDPLRGLIQDHVIAAVKMCCKDSFYDRHHYQTFVYSA 644
Query: 69 LC--ILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQF 126
L T I T+PP + KP LWTGKQ+++T++ NLT + +G+ K +
Sbjct: 645 LKDEYKGTRIVTVPPAMIKPQRLWTGKQIITTILKNLTLNQTGMNLYGKAKI----KNAW 700
Query: 127 GSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCL 186
+ G + ++ V +R+ ELL GILDK Q G++ YG+VHAV++ +G A LS L
Sbjct: 701 SANDKGGLEG--ESTVIVRNCELLCGILDKAQVGNSTYGIVHAVYEVYGGRTAGEFLSAL 758
Query: 187 AKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEII 246
+++T++L+ G TL + D+++R E D R +I++ + G EAA N + D +++
Sbjct: 759 GRVWTMWLKMHGHTLCIDDLILRPEFDAARREILDDSTTHGHEAAANYVKQDDWRDDDLL 818
Query: 247 SSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAK 306
S LQ P +D +K+ + + + +P GLI+PFP NN Q +V+SGAK
Sbjct: 819 KSNLQTILRD-PGESKGLDSAMSGAANKIQSKVIEKTMPHGLIKPFPHNNFQLIVQSGAK 877
Query: 307 GSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQE 366
GS VN QISC+LGQ LEG+R +M SG+TLPSF ++ S RAGG + RF+TG++PQE
Sbjct: 878 GSNVNATQISCMLGQQMLEGRRVPVMSSGKTLPSFPAFDASLRAGGLITDRFLTGLRPQE 937
Query: 367 FFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDG 426
+FFHCMAGREGL+DTAVKTSRSGYLQRCL+KHLE + VHYD+TVRDSD S++Q YGED
Sbjct: 938 YFFHCMAGREGLVDTAVKTSRSGYLQRCLIKHLEDIKVHYDLTVRDSDGSVVQFRYGEDA 997
Query: 427 LDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFS 486
LDVTK LT+ F F+ N Y +L
Sbjct: 998 LDVTKTNSLTN--FDFMALN------YPALL----------------------------- 1020
Query: 487 PHRTKFTMDLLEQWYQLDDKARKKYRKKFKACP---QPLISTFQPDAHFGSISENLADSV 543
+++ ++ L + + K +++ A P P+++T +PD HFG +SEN +
Sbjct: 1021 ---SRYNVEALGDAFPGKVRQAGKMQQEAIAQPAKHDPVLATLRPDTHFGCVSENFYKKL 1077
Query: 544 VKY-TKGRTDASHVDKFYDMIFYKNLL------SLANPGENVGVLAAQSIGEPSTQMTLN 596
Y TK + + K D ++ L+ ++A PGE VG+LAAQSIGEPSTQMTLN
Sbjct: 1078 QGYLTKDPARLADLSKGLDAKRFEQLMYLISCRAVAEPGEPVGILAAQSIGEPSTQMTLN 1137
Query: 597 TFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRI 656
TFHFAGRGD+NVTLGIPRLREI+M A+KA KTP M +P +P+++++A LA + +
Sbjct: 1138 TFHFAGRGDVNVTLGIPRLREIVMTASKAAKTPIMIVPLRLSVPQIQERARSLAARLAPV 1197
Query: 657 TMADVLEKVKIKEWLEISPEPH--MNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLK 714
++DVL++V++ L S + +Y+++ I Y + + ++ E K
Sbjct: 1198 RLSDVLDRVEVHSKLAASRDGDRFRSYRIRLSLIDKEEYEEVFGIGRKELFKALENKV-- 1255
Query: 715 ELEVAIAKRAAQGLKNMNIEQSRDQM--EDDVEDDEGEGAEGAGAALGRVDVSSDEERDE 772
+A+ G +++ + S D++ + D +D E EG A G DV ++ E E
Sbjct: 1256 -----VARLFKMGHRSI-VTSSSDKIIAQGDGDDAEAHDQEGGDDADG-ADVEANREIGE 1308
Query: 773 EDAVQSHKKVNQEEDNDFEEPEDEERMS-----EREEDDNTSN---------IGERFKIE 818
D + + Q+ED + + +D+E + E +E + N + E KI
Sbjct: 1309 GDGTLAAPR--QDEDQNAGDSDDDEAFANDVDMEADEGHGSDNDLEHATDQQVAELAKIA 1366
Query: 819 FRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKL-LFLPSNLFE-------EKESKHL-- 868
+ + V+ + Y YD K W ++ L +P+++ + E +K +
Sbjct: 1367 A--ARRKHRERVIALSPAIADYDYDSKGR-WLEVELAVPASMQKMLFVTILENSAKKIML 1423
Query: 869 ------------------LKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANR 910
L+ +G+N+ + Q+ LL+LN L ND++ M TYG+EA R
Sbjct: 1424 RETKGIKSCRVHVPEPDTLQVEGLNIYELWQHAELLELNSLKCNDVNAMFETYGVEAGQR 1483
Query: 911 VIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLE 970
IIRE+ VF VYGI V+ RHLSLVADYM G Y MNR +R + KM+FE +
Sbjct: 1484 SIIRELSAVFDVYGIAVNHRHLSLVADYMAFEGDYRGMNRISMRSSTDPFLKMSFESTTD 1543
Query: 971 KIRQASMQGREDSLRAPSARVMLGQECRQGTGL 1003
+R ++++G D+L++ S+R++LG GTG+
Sbjct: 1544 FLRASTLRGDHDTLQSNSSRLVLGAVTAGGTGV 1576
>gi|358057625|dbj|GAA96623.1| hypothetical protein E5Q_03293 [Mixia osmundae IAM 14324]
Length = 1866
Score = 618 bits (1594), Expect = e-174, Method: Compositional matrix adjust.
Identities = 398/1101 (36%), Positives = 578/1101 (52%), Gaps = 178/1101 (16%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
+H +AEA F+ N +QYLVP G+PL GLIQDHV++G ++ +DT+ TR +Y ++Y A
Sbjct: 826 THIAQAEARFIANTDNQYLVPTSGNPLRGLIQDHVVAGVHMTSKDTWFTREQYHQIIYGA 885
Query: 69 LCILN-----TEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGI-LD 122
L + I+ + P I +P LW+GKQ++STV++N+TP E L G+ L
Sbjct: 886 LRTEDDYTGGGTIKLVSPAILRPQRLWSGKQIISTVLLNITP---------EHLQGLNLR 936
Query: 123 KKQFGSTQYGLVHAVWDTH-----VTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAE 177
K +Y W H V +G+LL GILDK QFG+T +G+VH+V + +G+
Sbjct: 937 SKSKVPGRY------WGAHNEEGDVIFVNGDLLVGILDKSQFGATSFGMVHSVHELYGSL 990
Query: 178 HAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL 237
A LL L++LFT +LQ FT + D+++ + D+ R+ ++ A G++A + L
Sbjct: 991 TANKLLGILSRLFTKFLQHRAFTCRMDDLILSKRGDKARSTLLATANDRGSKATLEYVKL 1050
Query: 238 PLDTD---PEIISSQLQEAYASI---PQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEP 291
D D PE + + L+ Y + A +D K +T+ + CLP+GL++
Sbjct: 1051 E-DADLSKPETLRN-LKMRYEEVLRDDNKLAGLDAAMKGATGGLTSEVISACLPDGLVKF 1108
Query: 292 FPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAG 351
FP NN+Q M SGAKGS VN QISCLLGQ ELEG+R +MVSG+TLPSF ++ +P+AG
Sbjct: 1109 FPENNMQTMTVSGAKGSNVNVSQISCLLGQQELEGRRVPVMVSGKTLPSFKAFDTAPKAG 1168
Query: 352 GFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVR 411
G+V GRF+TG++PQEF+FHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEG+ HYD TVR
Sbjct: 1169 GYVAGRFLTGVRPQEFYFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGIRAHYDHTVR 1228
Query: 412 DSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLL 471
+SD S++Q YGEDGLDVTK+++L + FS
Sbjct: 1229 NSDGSVLQFAYGEDGLDVTKQRHLNELDFSARN--------------------------- 1261
Query: 472 LLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFK---ACPQPLISTFQP 528
T + S T L+ DD A K R+ A P P++S + P
Sbjct: 1262 FATLQESWD------------TAGLINALRSSDDAAGKHMREAISDPDAHP-PVMSKYFP 1308
Query: 529 DAHFGSISENLADSVVKYTKG---------------------RTDASHVDK--FYDMIFY 565
++ GS+SE+ ++ Y K +DK F ++
Sbjct: 1309 GSNIGSMSESFHKTLQAYVKANPQRIIKSSSSTRAAWPAYARNVKGGLIDKHAFRALMQI 1368
Query: 566 KNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKA 625
+ L SL + GE VGV+AAQ +GEPSTQMTLNTFHFAG G NVTLGIPRLREI+M A+
Sbjct: 1369 RYLRSLVDAGEAVGVIAAQGVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTASFK 1428
Query: 626 IKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMN-YQMK 684
KTPSM +PFL + E+ A R K T++ ++ V++K+ + E LE Y+++
Sbjct: 1429 PKTPSMHMPFLDHVS--EETAARFCKGATKLMLSQVIDKITVVEKLESEAGALQRIYEVR 1486
Query: 685 FCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAK-----RAAQGL------KNMNI 733
F PA Y + KP++I++ ++F+ + A++ +AA + K N
Sbjct: 1487 MQFYPASEYSAEYQTKPTEILEAIAKRFIPIFDKALSAELKLYQAAAVVDVGTLGKASNS 1546
Query: 734 EQSRDQMEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEP 793
+ D ++D DDE E G DE+D + +K+ ++ + D
Sbjct: 1547 SRVADAVDDGELDDEREPVRAGG------------NEDEQDGNKDEEKLRRQGNQDVMYG 1594
Query: 794 EDEERMSEREED-----------------DNTSNIGERFKIEFRDSTNVFVKDVVNQHNI 836
+D+ E + D D+ S++ R RD + + +V +I
Sbjct: 1595 DDDVASDEGDGDAIGDDFDEDAFEDAFRPDDASSV-SRNAAHQRDVYAEYEELIVGSQHI 1653
Query: 837 VHKYSYDKKNHMWCKLL---------FLPSNLFEEKESKHLLK----------------- 870
S+DK N +C + L +++ E K +++
Sbjct: 1654 -SDTSFDKANGEYCTITVPLYIGAPKLLLADILERCCVKTVVRQIAGISRCMVAPEDKAK 1712
Query: 871 ------TDGINVNFISQYRH-LLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
TDG N+ + + + +LN+LY NDI + TYG+EAA II+EV VF VY
Sbjct: 1713 PGLACNTDGANLPATWDFAYGVCNLNELYSNDIGAILLTYGVEAARTAIIKEVSGVFGVY 1772
Query: 924 GIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDS 983
GI VD RHL+L+ADYMT G Y NR G+ +PS K +FE + + A++ G D
Sbjct: 1773 GIGVDYRHLTLIADYMTTEGGYKPFNRTGLSNSPSPFLKASFETTAKFVADAALYGDFDD 1832
Query: 984 LRAPSARVMLGQECRQGTGLF 1004
+ PSA ++LGQ GTG F
Sbjct: 1833 MNNPSASIVLGQTPHTGTGAF 1853
>gi|50312167|ref|XP_456115.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49645251|emb|CAG98823.1| KLLA0F23243p [Kluyveromyces lactis]
Length = 1653
Score = 618 bits (1593), Expect = e-174, Method: Compositional matrix adjust.
Identities = 384/1065 (36%), Positives = 581/1065 (54%), Gaps = 132/1065 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCI- 71
KAEA L N SQYL P GSP+ GLIQDH+ +G L+ +D+F TR +Y +Y CI
Sbjct: 644 KAEALNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQYQQYIYG--CIR 701
Query: 72 ------LNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGI-LDKK 124
++ T+PP + KP PLWTGKQ+++TV++N P + + GI L+ K
Sbjct: 702 PEDGHATRNKLVTIPPAVMKPEPLWTGKQIITTVLLNTCPAN---------MPGINLNSK 752
Query: 125 QFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLS 184
+Y + + +V + G+LL GILDK Q+G++++G+VH++ + +G + A +LS
Sbjct: 753 NKIKNEY-WGKSSEENNVVFKDGQLLCGILDKSQYGASKFGIVHSLHEVYGPDVAAKVLS 811
Query: 185 CLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDT--- 241
L +LFT Y+ FT G+ D+ + E ++ R I+ + +G AA L D
Sbjct: 812 VLGRLFTNYITATAFTCGMDDLRLTAEGNKWRNDILQTSVDIGRVAAAEVTNLDKDVKSD 871
Query: 242 DPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMV 301
D E++ +L+E + +D S ++ +T+ + C+P+G ++ FP N++Q M
Sbjct: 872 DGELLK-RLEEILRDDNKL-GILDAITSSKVNSITSQVVSKCVPDGTMKKFPYNSMQAMA 929
Query: 302 ESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTG 361
SGAKGS VN QI CLLGQ LEG+R +MVSG+TLPSF P+E RAGG++ GRF +G
Sbjct: 930 LSGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPFETDARAGGYIKGRFYSG 989
Query: 362 IQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVL 421
I+PQE++FHCMAGREGLIDTAVKTSRSGYLQRCL K LEG+ + YD +VRD D +LIQ L
Sbjct: 990 IRPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHISYDNSVRDGDGTLIQFL 1049
Query: 422 YGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKP 481
YG D +D+TK ++T +F F DN LLKK+ S AL+ L +S+ K
Sbjct: 1050 YGGDAVDITKESHMT--EFKFCVDNYDA---------LLKKYNPS-ALVDHLDVESALKY 1097
Query: 482 NFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLAD 541
+ +R K + L + Q KY P++S F P + G++SEN D
Sbjct: 1098 SKKTLKNRKKNSK--LPHYAQT-----SKY--------DPVLSKFNPSKYLGAVSENFQD 1142
Query: 542 SVVKYTKGRTDASHVD------KFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTL 595
+ K+ D D KF ++ K + SL NPGE VG++A+QS+GEPSTQMTL
Sbjct: 1143 KLEKFISTNDDFFKKDENVNEKKFRALMQLKYMRSLINPGEAVGIIASQSVGEPSTQMTL 1202
Query: 596 NTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTR 655
NTFHFAG G NVTLGIPR+REI+M A+ AIKTP + +P D+ ++ A+ K++T+
Sbjct: 1203 NTFHFAGHGAANVTLGIPRMREIIMTASAAIKTPQLTMPIRDDVS--DELADTFCKNITK 1260
Query: 656 ITMADVLEKVKIKEWL--EISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFL 713
+ +++V++KV++ E + + S +Y + F + Y ++ V ++ KF+
Sbjct: 1261 VMLSEVIDKVQVTETIGAQDSSTSSRSYIINVRFFDSEEYLEEYDVTKEELESVIAGKFI 1320
Query: 714 KELEVAIAKRAAQGLKNMNIEQSRDQMED-DVEDDEGEGAEGAGAALGRVDVSSDEER-- 770
K LE AI K + Q + + D + + + A GA + V+ +DEE+
Sbjct: 1321 KTLEAAIVKEIKK--------QKKTSLPDVGIALPKSQTAMGADERITNVEEDNDEEQMR 1372
Query: 771 -----------DEEDAVQSHKKVNQEEDNDFE-----EPEDEERMSE-REEDDNTSNIGE 813
+ED V++ ++ Q D +F+ E E +E M E +EE +N G+
Sbjct: 1373 KKSKESVSYDDPDEDEVETMRQAEQTSDEEFDSDKESESESDEDMDEAKEEREN----GK 1428
Query: 814 RFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC-----------KLLFLPSNLFEE 862
E RD + + V KY++D WC KLL + N+ E+
Sbjct: 1429 HMTKEQRDRQSALISST----RFVTKYNFDDDEGKWCEFKLELAGDTEKLLMV--NIVED 1482
Query: 863 ---------------------KESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMAS 901
+ K +L T+G+N + +D+N + ND+ +
Sbjct: 1483 ICRKSIIRQVPHIDRCVHPEPENGKRVLVTEGVNFQAMWDQDDFIDINGIRSNDVAAVLK 1542
Query: 902 TYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQ 961
TYG+EAA I+ E+ NVF+ Y I V RHL L+AD MT G Y+A NR G+ + S +
Sbjct: 1543 TYGVEAARNTIVNEINNVFSRYAISVSFRHLDLIADMMTRQGNYLAFNRQGMESSTSSLM 1602
Query: 962 KMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
KM++E + + +A + + L++PSA++++G+ GTG F L
Sbjct: 1603 KMSYETTCQFLTKAVLDNEHEELKSPSAKIVMGKLNGVGTGSFDL 1647
>gi|260940725|ref|XP_002614662.1| hypothetical protein CLUG_05440 [Clavispora lusitaniae ATCC 42720]
gi|238851848|gb|EEQ41312.1| hypothetical protein CLUG_05440 [Clavispora lusitaniae ATCC 42720]
Length = 1248
Score = 617 bits (1592), Expect = e-174, Method: Compositional matrix adjust.
Identities = 384/1084 (35%), Positives = 568/1084 (52%), Gaps = 152/1084 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA L N SQYL P GSPL GLIQDH+ +G L+ +D+F TR +Y L+Y CI
Sbjct: 219 KAEALNLANTDSQYLTPTSGSPLRGLIQDHISAGVWLTNKDSFFTREKYQQLIYG--CIR 276
Query: 73 --------NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKK 124
T I T+PP ++KP PLWTGKQV++T+++N+ PK I ++ K
Sbjct: 277 PEDGHTNGATRIVTVPPAVFKPEPLWTGKQVITTILLNIKPKGVPGIN-------LVSKN 329
Query: 125 QFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLS 184
+ +G + V R+GELLSGILDK Q+G++ YG+VH++ + +G + A LS
Sbjct: 330 KIKDDYWG--KGSRENEVLFRNGELLSGILDKSQYGASAYGIVHSLHEVYGPDTASKALS 387
Query: 185 CLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPE 244
L +LFT Y+ FT G+ D+ + E + R I+ ++ +G AAC L T
Sbjct: 388 VLGRLFTNYIMMTAFTCGMDDLRLTDEGNAWRKDILKQSVDIGRAAACEVTNLDSSTTSS 447
Query: 245 I--ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
+ +L+E + +D +S ++ +T+ + C+P+G ++ FP N++Q M
Sbjct: 448 DSELLKRLEEILRDDNK-SGILDAITQSKVNAITSQVVSKCVPDGTMKRFPYNSMQAMAL 506
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
SGAKGS VN QI CLLGQ LEG+R +MVSG+TLPSF PYE RAGG++ GRF +GI
Sbjct: 507 SGAKGSGVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPYETDARAGGYIKGRFYSGI 566
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
+PQE++FHCMAGREGLIDTAVKTSRSGYLQRCL K LEG+ V YD +VRD D SL+Q LY
Sbjct: 567 RPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGIHVSYDNSVRDGDGSLLQFLY 626
Query: 423 GEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLL----LLTFKSS 478
G D +D TK+ ++ Q+ F DN + L K +P L L L++
Sbjct: 627 GGDAVDTTKQSHMN--QYKFCLDNYDAL--------LAKYNPGELTEHLDTDTALSYSKK 676
Query: 479 GKPNFIFS---PHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSI 535
+ N PH + T KY P++S F P + G++
Sbjct: 677 VRKNLKKQKDLPHYNQST----------------KY--------DPVLSVFNPAKYLGAV 712
Query: 536 SENLA---DSVVK-----YTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIG 587
SE D V + K +D KF ++ K + SL +PGE+VG++AAQSIG
Sbjct: 713 SEKFQEKLDDFVNQHSDLFAKHSSDGVSEKKFRALMQLKYMRSLIHPGESVGIIAAQSIG 772
Query: 588 EPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKAN 647
EPSTQMTLNTFHFAG G NVTLGIPR+REI+M A+ +IKTP M +P L D+ + A+
Sbjct: 773 EPSTQMTLNTFHFAGHGAANVTLGIPRMREIIMTASASIKTPQMTLPLLDDVS--DDMAD 830
Query: 648 RLAKSMTRITMADVLEKVKI-KEWLEISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIID 706
KS+ ++ +++ ++KV + + + +Y++K F Y ++ + ++ +
Sbjct: 831 SFCKSIGKVCLSEFIDKVVVTETTGTDDGTSYRSYKVKIVFFTKKEYEEEYDIAQEQLQN 890
Query: 707 HFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRVDVSS 766
KFL +LE+AI+K + + Q D G+ A +
Sbjct: 891 TVATKFLAKLELAISK------------EMKKQTRSDSLPTVGKAVPKAQTDAALAPKTI 938
Query: 767 DEERDEEDAVQSHKKVNQEEDNDFEEP-EDEERMSEREEDDNTSN--------------- 810
EE ++ DA + N ++ ++ P EDEE+M E+ +
Sbjct: 939 GEEGEDGDASDDKLRANTKQAVSYDAPDEDEEKMRRAEQTSDEEMEESETESGSESESES 998
Query: 811 --------IGERFKIEFRD--------STNVFVKDVVNQHNIVHKYSYDKKNHMWC---- 850
+ E + + +D S DVV+ H+ V KY +D +N WC
Sbjct: 999 DSDDDNMVVDEAKESKPKDTKPKTLTKSAKDRQADVVSSHHFVKKYDFDDENGEWCEFEI 1058
Query: 851 -------KLLFLPSNLFEE---------------------KESKHLLKTDGINVNFISQY 882
KLL + N+ E+ + + +L T+G+N + +
Sbjct: 1059 ELLGDVQKLLMV--NIIEDLCRQVVVREIKNIGRCLRPQPENGRRVLTTEGVNFKAMWEQ 1116
Query: 883 RHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHS 942
+D+N + NDI + TYG+EAA I+ E+ NVF+ Y I V RHL L+AD MT
Sbjct: 1117 DDFIDVNGVRSNDISAVLRTYGVEAARNTIVNEINNVFSTYAISVSSRHLDLIADMMTRE 1176
Query: 943 GTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTG 1002
G+Y+A NR GI + S +KM++E + + +A + G + L +PSAR+++G+ GTG
Sbjct: 1177 GSYLAFNRQGIDSSTSAFKKMSYETTCQFLTKAVLDGDREDLESPSARIVMGKLSNVGTG 1236
Query: 1003 LFQL 1006
F +
Sbjct: 1237 SFDV 1240
>gi|406608115|emb|CCH40549.1| DNA-directed RNA polymerase I subunit A1 [Wickerhamomyces ciferrii]
Length = 1632
Score = 617 bits (1591), Expect = e-174, Method: Compositional matrix adjust.
Identities = 404/1083 (37%), Positives = 584/1083 (53%), Gaps = 154/1083 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA L N SQYL P GSPL GLIQDH+ +G ++ +D+F TR EY VY CI
Sbjct: 613 RAEALNLANTDSQYLTPTSGSPLRGLIQDHISAGVWITNKDSFFTREEYQQYVYG--CIR 670
Query: 73 -------NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQ 125
++ T+PP I+KP+PLWTGKQ+++TV++N+TP I +L K +
Sbjct: 671 PEDGHSSRPKLVTVPPAIFKPVPLWTGKQIITTVLLNITPVSMPGI-------NLLSKNK 723
Query: 126 FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSC 185
+ +G + V + G LL GILDK Q+G++QYG+VH++ + +G A LS
Sbjct: 724 IKNEYWG--QGSRENEVLFKDGALLCGILDKSQYGASQYGIVHSLHEVYGPSVAGKALSV 781
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDT---D 242
L +LFT Y+Q FT G+ D+ + E ++ R +I+ + +G AA L T D
Sbjct: 782 LGRLFTNYIQSTAFTCGMDDLRLTAEGNQWRNEILLTSVDVGRLAAAEVTNLDKSTKHDD 841
Query: 243 PEIISSQLQEAYASIPQFRAQI-DRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMV 301
PE++ +L+E S +A I D +S ++ +T+++ +PEG ++ FP N++Q M
Sbjct: 842 PELLK-RLEEV--SRDDNKAGILDAVTQSKVNAITSSVVSKIIPEGTMKRFPYNSMQAMA 898
Query: 302 ESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTG 361
SGAKGS VN QI CLLGQ LEG+R +MVSG+TLPSF PYE RAGG++ GRF +G
Sbjct: 899 LSGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPYETDARAGGYIKGRFYSG 958
Query: 362 IQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVL 421
I+PQE++FHCMAGREGLIDTAVKTSRSGYLQRCL K LEG+ V YD +VR+ D SL+Q L
Sbjct: 959 IRPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSVRNGDGSLLQFL 1018
Query: 422 YGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKP 481
YG D +DVTK ++ QF F DN LL K+ KP
Sbjct: 1019 YGGDAVDVTKESHMN--QFKFCIDNYDA---------LLTKY----------------KP 1051
Query: 482 NFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKF-------KACPQ--------PLISTF 526
+L+E LD ++ KY KK K P P +S +
Sbjct: 1052 G------------ELIE---HLDTESANKYSKKVRKNMKKNKDIPHFAQSTKYDPTLSVY 1096
Query: 527 QPDAHFGSISE---NLADSVVK-----YTKGRTDASHVDKFYDMIFYKNLLSLANPGENV 578
P + GS+SE N DS ++ +TK S KF ++ K + SL NPGE+V
Sbjct: 1097 NPSKYLGSVSETFQNKLDSFIEENPKLFTKSGLSES---KFRALMQLKYMRSLINPGESV 1153
Query: 579 GVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPD 638
G++AAQSIGEPSTQMTLNTFHFAG G NVTLGIPR+REI+M A+ AIKTP M +P L +
Sbjct: 1154 GIIAAQSIGEPSTQMTLNTFHFAGHGAANVTLGIPRMREIIMTASAAIKTPQMTLPLLDE 1213
Query: 639 MPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPE--PHMNYQMKFCFIPAHMYRDK 696
+ + +A+ +S+ ++ +++++ V + E S + P +Y + F F Y ++
Sbjct: 1214 VN--DDQADAFCRSIAKVVFSELVDHVTVTETSGDSEDGNPTRSYAIHFEFFENKQYHEE 1271
Query: 697 TSVKPSKIIDHFERKFLKELEVAIAKR-------AAQGLKNMN--IEQSRDQMEDD---- 743
V ++ FLK LE I K ++ L + + +S+ Q+ D
Sbjct: 1272 YDVSKEQLEQVITSTFLKTLEAQIVKELKKQKKVGSESLPEIGKAVPKSQSQITSDDRVP 1331
Query: 744 ---VEDDEGEGAEGAGAALGRVDVSSDEERDEEDAV--QSHKKVNQEEDNDFEEPEDEER 798
++D+ + + G+ VS DE D+E + K ++E D+D + D +
Sbjct: 1332 SKSNDNDDDDADDEKSRTKGKQSVSYDEPDDDEIETMRNAEKSSDEEMDSDSDNDSDSDS 1391
Query: 799 MSEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC-------- 850
S+ E NT+ GE K RD + V+ HN++ K+++D +N WC
Sbjct: 1392 DSDDEAAANTTFSGELSK-SARDRQSA----VLGAHNLITKFNFDDENGQWCDFKLELDA 1446
Query: 851 ---KLLFLPSNLFEE---------------------KESKHLLKTDGINVNFISQYRHLL 886
KLL + N+ E+ + K +L T+G+N N + Y +
Sbjct: 1447 KTQKLLMV--NIVEDICRKVVVKEVPRIGRCLHPQPENGKRVLTTEGVNFNAMWDYDDFI 1504
Query: 887 DLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYV 946
D+N + NDI + TYG+EAA I+ E+ NVF Y I V RHL L+ D MT GTY+
Sbjct: 1505 DVNGITSNDIAAVLHTYGVEAARNTIVNEISNVFGRYAISVSSRHLDLIGDMMTREGTYL 1564
Query: 947 AMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
A NR GI + S KM++E + + +A + + L +PSAR++LG+ GTG F L
Sbjct: 1565 AFNRQGIDSSTSTFMKMSYETTCQFLTKAVLDSEREELESPSARIVLGKLAGVGTGSFDL 1624
Query: 1007 RNR 1009
+R
Sbjct: 1625 LSR 1627
>gi|390354095|ref|XP_794863.3| PREDICTED: DNA-directed RNA polymerase I subunit RPA1
[Strongylocentrotus purpuratus]
Length = 1738
Score = 615 bits (1587), Expect = e-173, Method: Compositional matrix adjust.
Identities = 365/852 (42%), Positives = 497/852 (58%), Gaps = 84/852 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA + + + QYLVPKDG+PL GLIQDH+ISG ++++R F TR EY LVY +L
Sbjct: 598 RAEALTIASTNHQYLVPKDGTPLGGLIQDHIISGVRMTVRGRFFTRLEYQQLVYCSLTDK 657
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTP---KDKVIIRHGELLSGILDKKQFGST 129
++ LPP I KP LW+GKQ++ST+IIN P K I ++ + K +
Sbjct: 658 EGPVKCLPPCIRKPALLWSGKQLISTIIINTIPEGCKPLDFIGKSKINNKSWCKAEPRPP 717
Query: 130 QYG---LVHA-VWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSC 185
+ G LV + ++ V IR GELLSG+LDK +G T YGLVH +++ +G A LLS
Sbjct: 718 KAGGGALVGTDMCESEVIIREGELLSGVLDKGNYGPTPYGLVHCIYELYGGHIAGKLLSH 777
Query: 186 LAKLFTVYLQR-VGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPE 244
+LFT +LQ+ GFTLG DI+V + D KR I+ +++ G+EA ALG+ T
Sbjct: 778 FGRLFTTFLQQHTGFTLGPEDIIVLDKADEKRLDILEESKDCGSEAVAQALGVEEFTG-- 835
Query: 245 IISSQLQEAYASIPQFRA------QIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQ 298
+S L + Y I + +ID Q K+ D +N ++ CL GL++ FP NNLQ
Sbjct: 836 FHASTLTKRY-EIAHRKPDGSDMKEIDLQMKTKTDLYSNQVSSTCLGSGLLKQFPENNLQ 894
Query: 299 FMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRF 358
+V SGAKGS VN +QISCLLGQIELEG+RP +MVSGR+LPSF PYE SPR+GG+V GRF
Sbjct: 895 LVVLSGAKGSMVNCLQISCLLGQIELEGRRPPLMVSGRSLPSFPPYETSPRSGGYVAGRF 954
Query: 359 MTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLI 418
+TGI+PQE+FFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V+YD TVRDSD S++
Sbjct: 955 LTGIKPQEYFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVNYDQTVRDSDGSIV 1014
Query: 419 QVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICS------------------YKVILNLL 460
Q YGEDGLD+ + +L +QF FL +N ++ I
Sbjct: 1015 QFQYGEDGLDILRTPFLHKEQFQFLIENANAHLPSQSKYRGPVNDPSQAEKLFRKIKRWK 1074
Query: 461 KKHPLSLALLL---LLTFKSSGKPNFIFSPHR---------TKFTMDLLEQWYQLDDKAR 508
+KH S L F P+ + + K ++ +W ++ D R
Sbjct: 1075 EKHSDSSRSERRSPFLEFCHKEYPSILENAQSDEDNVRKAYNKAKKRIIRRWREVTD--R 1132
Query: 509 KKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDAS----------HVDK 558
+Y KK CP P+ +PD H G+ISE L + Y R S K
Sbjct: 1133 HRYEKKTAPCPDPVSCQMRPDRHLGAISEKLESLLQDYLDSRLPTSDDADGTKREDEETK 1192
Query: 559 FYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREI 618
+M++ K +L +PGE VG+LAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREI
Sbjct: 1193 LKNMMYSKYQRALCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREI 1252
Query: 619 LMMATKAIKTPSMEIPFL-PDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEP 677
LM+A+ IKTPSM IPFL PD+ KK R+ + ++R+ ++ V+E + I E + P
Sbjct: 1253 LMVASANIKTPSMTIPFLNPDISA--KKIGRICRQLSRVHLSQVIEDIDIWESYDF-PTT 1309
Query: 678 HMN---YQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIE 734
H + Y+++ F+P Y+D+ + P+ I+ + E FLK+ + I KR + LK N
Sbjct: 1310 HDHYRVYKIRLNFLPHEEYKDELNATPASILSYIEVTFLKQF-LEIVKRKMKDLKKANFA 1368
Query: 735 QSRDQMEDDVEDDEGEGA---------------EGAGAALGRVDVSSDEERDEE-DAVQS 778
SR + + D+ D G A E A + R +SS+ DEE D S
Sbjct: 1369 SSR-KSKLDLIGDGGNAAPTQDKNGTDPAMQEDEPASVSRNRDSISSEGSGDEEGDGTAS 1427
Query: 779 HKKVNQEEDNDF 790
K +E+ ++
Sbjct: 1428 KYKKKHDEEKEY 1439
Score = 162 bits (410), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 87/207 (42%), Positives = 126/207 (60%), Gaps = 30/207 (14%)
Query: 830 VVNQHNIVHKYSYDKKNHMWCKLLF---LPSN---------LFEEKESKH---------- 867
VN ++ Y +D ++ +WC+ F L N L ++ + H
Sbjct: 1527 TVNLSPLMVTYDFDAEDQLWCEFKFKVDLTDNKLDMASLVELVSKQATVHHVPGISRCLV 1586
Query: 868 --------LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNV 919
L T+G+N++ + ++ LLDLNK Y NDIH MA+ YGIEAA++ II+EV++V
Sbjct: 1587 SGQGSGETKLLTEGVNLHELYKHDKLLDLNKAYTNDIHSMANAYGIEAASKAIIKEVRDV 1646
Query: 920 FAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQG 979
F+VYGI VDPRHLSLV+DYMT G Y NR G+ N S IQKMTFE + +R+A++QG
Sbjct: 1647 FSVYGITVDPRHLSLVSDYMTFEGVYRPFNRIGLESNASPIQKMTFESCMRFLREATIQG 1706
Query: 980 REDSLRAPSARVMLGQECRQGTGLFQL 1006
+D+L++PSAR+++G+ GTG F L
Sbjct: 1707 AKDNLQSPSARLVVGRVVNGGTGCFDL 1733
>gi|344231880|gb|EGV63759.1| alpha subunit of RNA polymerase I [Candida tenuis ATCC 10573]
Length = 1625
Score = 615 bits (1587), Expect = e-173, Method: Compositional matrix adjust.
Identities = 383/1059 (36%), Positives = 563/1059 (53%), Gaps = 122/1059 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL--- 69
KAEA L N SQYL P GSPL GLIQDH+ +G L+ +DTF TR Y L+Y +
Sbjct: 619 KAEALNLANTDSQYLTPTSGSPLRGLIQDHISAGVWLTSKDTFFTRETYQQLIYGCIRPE 678
Query: 70 --CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
I T IRTLPPTI+KP PLWTGKQ++ST+++N+ P D + ++ K +
Sbjct: 679 DGHITMTRIRTLPPTIFKPEPLWTGKQIISTILLNIKPADVPGVN-------LISKNKIK 731
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
S +G + V ++GELL GILDK Q+G++Q+G+VH++ + +G A LS L
Sbjct: 732 SEYWG--EGSTENEVIFKNGELLCGILDKSQYGASQFGIVHSLHEVYGPTIAGKSLSILG 789
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDT---DPE 244
+LFT Y+ FT G+ D+ + E ++ R I+ ++ +G AA LP DT D E
Sbjct: 790 RLFTNYIMMTAFTCGMDDLRLTAEGNQWRNDILKQSVDVGRLAANEVTNLPSDTSVTDKE 849
Query: 245 IISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESG 304
++ +L+E + +D S + +T+ + C+P+G ++ FP N++Q M SG
Sbjct: 850 LLK-RLEEILRDDNK-SGILDAVTSSKANAITSQVVSKCVPDGTMKRFPYNSMQAMALSG 907
Query: 305 AKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQP 364
AKGS VN QI CLLGQ LEG+R +MVSG++LP F PYE RAGG++ RF +GI+P
Sbjct: 908 AKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKSLPCFKPYETDARAGGYIKQRFYSGIRP 967
Query: 365 QEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGE 424
QE++FHCMAGREGLIDTAVKTSRSGYLQRCL K LEG+ V YD +VRD D +LIQ LYG
Sbjct: 968 QEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSVRDGDGTLIQFLYGG 1027
Query: 425 DGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFI 484
D +D TK+ ++ +F F +N +LLKK+ +P FI
Sbjct: 1028 DAVDTTKQSHMN--EFKFCLENYD---------SLLKKY----------------QPEFI 1060
Query: 485 FSPHRTKFTMDLLEQWYQLDDKARK--KYRKKFKACPQPLISTFQPDAHFGSISENLADS 542
+ + T +D ++++ + K Y + K P IS + P + G++SEN +S
Sbjct: 1061 DNLN-TDDALDYMKKYKKSIKKINDLPHYEQTLKY--DPTISVYNPAKYLGAVSENFQNS 1117
Query: 543 VVKYTKG-----RTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNT 597
+ K+ + D +KF ++ K + SL NPGE VG++A+QS+GEPSTQMTLNT
Sbjct: 1118 LEKFISDNKELFKKDKVGKEKFKALMQLKYMRSLINPGEAVGIIASQSVGEPSTQMTLNT 1177
Query: 598 FHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRIT 657
FHFAG G NVTLGIPR+REI+M A+ +I TP M +P D+ ++ A+ K++T+I
Sbjct: 1178 FHFAGHGAANVTLGIPRMREIIMTASSSIATPQMTMPLRADINDVQ--ADLFCKNITKIV 1235
Query: 658 MADVLEKVKIKEWLEISPEP--HMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKE 715
+++ L V++ E + + +Y +K F Y+ + + + KFL
Sbjct: 1236 LSEFLLNVRVVETTSTTGDGDNSRSYTIKLNFFTKEEYQKEYDITQKHLEGVVISKFLGA 1295
Query: 716 LEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDA 775
LE I K + K+ D + EG E D E + DA
Sbjct: 1296 LETTITKEIKKQKKSNAPSIGVASKASDPVASKLEGIE------------DDYEEGDGDA 1343
Query: 776 VQSHKKVNQEEDNDFEEPEDE--ERMSEREEDDNTSNIGERFKIEFRDSTNVFV------ 827
+ K N ++ +E P+D+ E M EE + S +
Sbjct: 1344 NDAKMKKNSKQQVSYEGPDDDEIETMKRAEETSEEEDADSDSDSSDESSESESEDDMQVD 1403
Query: 828 -----------KDVVNQHNIVHKYSYDKKNHMWC-----------KLLFLPSNLFEEKES 865
++V+ H+ V K+++D N WC KLL + N+ EE
Sbjct: 1404 KPISKEAKSRQQEVITNHHFVTKFNFDDDNGEWCEFDLRLVGDFEKLLMV--NIVEELSK 1461
Query: 866 KHL------------------LKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEA 907
K + L T+G+N + + +D+N + NDI+ + TYG+EA
Sbjct: 1462 KIVVREVPKIGRCIHPSGERHLTTEGVNFRAMWEQDDFIDVNSITSNDIYQVLKTYGVEA 1521
Query: 908 ANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEM 967
A I+RE+ NVF Y I V RHL L+ D MT GTY+A NR GI + S KM++E
Sbjct: 1522 ARNTIVREINNVFERYAINVSSRHLDLIGDMMTREGTYLAFNRQGIDSSTSAFMKMSYET 1581
Query: 968 PLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+ I ++ + G ++ L +PSA++++G+ GTG F L
Sbjct: 1582 TCQFITKSVLNGDKEELESPSAKIVMGKLSNVGTGTFDL 1620
>gi|170590678|ref|XP_001900098.1| RNA polymerase Rpb1, domain 2 family protein [Brugia malayi]
gi|158592248|gb|EDP30848.1| RNA polymerase Rpb1, domain 2 family protein [Brugia malayi]
Length = 1687
Score = 612 bits (1579), Expect = e-172, Method: Compositional matrix adjust.
Identities = 377/1051 (35%), Positives = 561/1051 (53%), Gaps = 137/1051 (13%)
Query: 43 VISGAKLSLRDTFLTRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIIN 102
++SG L++R F + ++M+LV A + PP + KP LW+GKQ++STV+ N
Sbjct: 673 IVSGVLLTIRGRFFNKEDFMHLVLSAFAETTQRLVIPPPAMLKPEVLWSGKQIISTVLRN 732
Query: 103 LTPKDKVIIR---HGELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQF 159
P K ++ + + + ++ + ++ V R ELL G+LDK+ +
Sbjct: 733 CIPLHKPLLNIRSKAKTPLSCWKVEDHSAPKFNMS----ESEVVFRQAELLVGVLDKQHY 788
Query: 160 GSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKI 219
GSTQYGL+H WD +G + A +LSC ++LFT +LQ GFTLGV DIL+R+E D++R K
Sbjct: 789 GSTQYGLIHCCWDLYGHQFATRILSCFSRLFTTHLQYHGFTLGVADILIRKEADKQRKKE 848
Query: 220 INKARRLGTEAACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLD-KVTNN 278
I R+ G L D D I + AY + + ++ Y LD K+
Sbjct: 849 IKALRKCGDTVVRECFNLDEDADESEIKHVMASAYCN-----PKGEQNYIQQLDYKMKET 903
Query: 279 INQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTL 338
+N+VC+P GLI+ FP N LQ M+ SGAKG+ VN++QISC LGQIELEG RP M +GRTL
Sbjct: 904 LNRVCMPAGLIKLFPQNALQLMILSGAKGTMVNSVQISCELGQIELEGHRPPMTNAGRTL 963
Query: 339 PSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKH 398
PSF ++ SPRAGGFVD RF+TGI PQE FFH MAGREGLIDTAVKTSRSGYLQRC+VKH
Sbjct: 964 PSFRSFDTSPRAGGFVDQRFLTGINPQELFFHTMAGREGLIDTAVKTSRSGYLQRCIVKH 1023
Query: 399 LEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILN 458
LEGL YD TVRD D S+IQ YGEDG+DV K ++ KQF FL DN++ + S + ++
Sbjct: 1024 LEGLVAQYDSTVRDHDGSIIQFRYGEDGMDVCKSTFMDSKQFDFLADNMQVLRSRVLPVD 1083
Query: 459 L------LKKHPLSLALLLLLTFKSSGKPNFIFSPHRTKFTMD--------LLEQWYQLD 504
LKK + + K +++ +F+ + + + W++L
Sbjct: 1084 YNEDDWDLKKCEKAYKKIKKWRRKYGIHKRKVYTSGYVEFSKEYRGTPKEKVQKMWFELT 1143
Query: 505 DKARKKYRKKF-KACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMI 563
D+ R +Y K KACP + P+ G++ + L D + Y
Sbjct: 1144 DEERYEYHSKAGKACPTAVDEKMNPNRSLGALPQKLLDDIDDY----------------- 1186
Query: 564 FYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMAT 623
+ +SIGEPSTQMTLNTFHFAGRG+MNVTLGIPRLREILM A+
Sbjct: 1187 -----------------ICRKSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMTAS 1229
Query: 624 KAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEI-SPEPHMNYQ 682
IKTPS EI P ++ + + + RI + ++++K I E + + E Y
Sbjct: 1230 NDIKTPSTEIHIKPGTS--SERIETIKRELGRIYLKELIKKFTIDERINLDGKETWRCYD 1287
Query: 683 MKFCFIPAHMYRDKTS-VKPSKIIDHFERKFLKELEVAIAKRAAQ------------GLK 729
++ + A + + +I+ ER+F+K + I+ R + L
Sbjct: 1288 LRIELLRAKERIECIRHISRHRILTEVERRFVKAIGKRISDRCREMTDHQALQHKKLKLN 1347
Query: 730 NMNI------EQSRDQMEDD-VEDDEGEG------AEGAGAALGRVDVSS--DEERDEED 774
N+ + E S+ + +DD + DE +G A+G +D ++ + E DE+
Sbjct: 1348 NLTVGTGDEKETSKPKKQDDELSSDEEDGGGIDLDADGMRILKRHLDDAAEYEGEEDEQR 1407
Query: 775 AVQSHKKVNQEEDNDFE-----EPEDEERMSEREEDDNTSNIGERFKIEFRDSTNVFVKD 829
V S +KV ED E E E+ E ER+ D N S++ + + + +++ ++
Sbjct: 1408 IVLSQQKV---EDTFMEISTESEGENAETTVERDADANDSSLDAQLRSQEAEASR--IQS 1462
Query: 830 VVNQHNIVHKYSYDKKNHMWCKLLF---------LPSNLFEEKESKH------------- 867
V+ +V Y +D K++ WC + F L E+E ++
Sbjct: 1463 VITSSPLVKDYKFDVKSNRWCTVTFQLPLSTKTKLDVGALVERELENFLVWETPGIEKCI 1522
Query: 868 ------------LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIRE 915
+L T GINV + ++ +LD+N LY ND++ M + YGIEA R +++E
Sbjct: 1523 VRCENRGDDQYQVLATQGINVQALMKHSDVLDVNTLYSNDLNMMCNNYGIEACGRALVKE 1582
Query: 916 VKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQA 975
+ VF YGI+V+ RHL+L ADYMT +G +R + L+ S +Q+MTFE + +R A
Sbjct: 1583 IIRVFTPYGIDVNWRHLTLAADYMTFTGRIQPFSRGAMSLSASPLQRMTFETTIAFMRDA 1642
Query: 976 SMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+ G +D L +PS+R+++G R GTG+F +
Sbjct: 1643 LINGDDDHLMSPSSRLVIGGLLRGGTGIFDV 1673
>gi|392580430|gb|EIW73557.1| hypothetical protein TREMEDRAFT_26611 [Tremella mesenterica DSM 1558]
Length = 1691
Score = 612 bits (1577), Expect = e-172, Method: Compositional matrix adjust.
Identities = 398/1085 (36%), Positives = 577/1085 (53%), Gaps = 148/1085 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL--- 69
+AE+ + N +QYLVP G PL GLIQDHV++G + + +F TR EY L+Y AL
Sbjct: 661 RAESLMIANTDNQYLVPTSGKPLRGLIQDHVVAGVWMCNKSSFFTREEYFQLIYGALRTE 720
Query: 70 --CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDK--VIIRHGELLSGILDKKQ 125
I I TLPP IWKP P+WTGKQ++ST++ NLTP + + + +S L ++
Sbjct: 721 DNYITQNRIITLPPAIWKPRPMWTGKQIISTILTNLTPSNAKGLNLNSENKISNKLWQRD 780
Query: 126 FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSC 185
S Q + + +V G L+ G+LDK Q+G++ YGLVH+V + +G A LL
Sbjct: 781 DSSDQ-----TMSEENVIFLDGHLICGVLDKSQYGASAYGLVHSVHELYGPVTANRLLGV 835
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDT---D 242
L++L T YLQ F+ + D+L+ E ++ R I++ A R G AA +GLP + D
Sbjct: 836 LSRLLTKYLQHDAFSCRMDDLLLTAEGEKIRKSILDDAARDGERAAIKYVGLPPGSSVDD 895
Query: 243 PEI---ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQF 299
P + ++L+E A +D ++ +K T+ IN LP+ L+ PFP NN+Q
Sbjct: 896 PGTARNLVTRLEETLRD-DHLMAGLDAVMQTAFNKTTSKINNDVLPKHLVRPFPDNNMQL 954
Query: 300 MVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFM 359
M SGAKGS VN QIS LLGQ LEG+R MVSG+TLPSF P++ S RAGG+V RF+
Sbjct: 955 MTISGAKGSKVNASQISTLLGQQALEGRRVPTMVSGKTLPSFKPFDTSARAGGYVANRFL 1014
Query: 360 TGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQ 419
TGI+PQE++FHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEG+ VHYD TVRDSD S++Q
Sbjct: 1015 TGIRPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGVKVHYDHTVRDSDSSVLQ 1074
Query: 420 VLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSG 479
LYGED LDVTK Q+L +F F N ++ +LN + P
Sbjct: 1075 FLYGEDSLDVTKAQHLG--KFDFAARN------HESLLN--RSRP--------------- 1109
Query: 480 KPNFIFSPHRTKFTMDLLEQWYQLD--DKARKKYRKKFKACPQPLISTFQPDAHFGSISE 537
D+L Q + DK +K +K K +P +S F P + GS+SE
Sbjct: 1110 --------------RDVLPVVIQDEAVDKMKKALKKPHKH--EPALSLFPPSRYLGSMSE 1153
Query: 538 NLADSVVKYT----------KGRTDASHV------DK-FYDMIFYKNLLSLANPGENVGV 580
A + Y KG +S DK F + + + SL PGE VG+
Sbjct: 1154 TYARKLATYIEQNRFGFITKKGEIKSSPYTSERVSDKEFLQLARVRYMRSLVEPGEAVGL 1213
Query: 581 LAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMP 640
LA+Q +GEPSTQMTLNTFH AG G NVTLGIPRLREI+M A+ TP+M++ P +
Sbjct: 1214 LASQGVGEPSTQMTLNTFHLAGHGAANVTLGIPRLREIVMTASTKPITPTMKLALRPGVS 1273
Query: 641 KLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEP--HMNYQMKFCFIPAHMYRDKTS 698
+++A+ K ++R+T++ V+E+V + E L + Y + F P+ YR +
Sbjct: 1274 --DQQADSFVKHVSRLTLSQVVERVSVTERLSNKNDEVRQRKYTVLLEFYPSEEYRKEYE 1331
Query: 699 VKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQ-MEDDVEDDEGEGAEGAGA 757
+ ++ F K L+ I+K ++ E D+ + D+GEG E
Sbjct: 1332 ITTLQVYQALVLSFAKRLKEEISKEMKNSTRSSAQELQVDRGLTVRKGGDDGEGDEVPTI 1391
Query: 758 ALGRVDVSSD---------------EERDEEDAVQSHKKVNQEED--------------- 787
GR D + + EED S + ED
Sbjct: 1392 RKGRDDELDNDDEDSYQIKRQNQGRQHEYEEDDSNSDSGIGDLEDFVERNMEEDDDEEEE 1451
Query: 788 ------NDFEEPEDEERMSEREED--------------DNTSNIGERFKIEF-RDSTNVF 826
D +E ++++++ +D D S +F +EF ++ +
Sbjct: 1452 DEDLGIRDPKEKARKDQLTDTLQDEFKKVLPYATSVNFDVHSGKSAQFDMEFAANAPKLL 1511
Query: 827 VKDVVNQH---NIVHKYSYDKKNHMWCKLLFLPSNLFEEKESKHLLKTDGINVNFI-SQY 882
+ D++ + ++H+ S + C +F ++ E L T+G N+ + +
Sbjct: 1512 LVDIIERACRLAVIHEVSSINR----CMKIF-----DDKGEFTGALITEGSNLKGMWALA 1562
Query: 883 RHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHS 942
L+DL+KL NDI+ + TYG+EAA R II EV +VF YGI VD RH+S++ADYMTH+
Sbjct: 1563 DELIDLDKLGSNDIYALLQTYGVEAARRAIIDEVSSVFGAYGITVDYRHISVIADYMTHA 1622
Query: 943 GTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTG 1002
G Y A NR GI S + K +FE ++ + +A++ G D L +P+A+++LG+ GTG
Sbjct: 1623 GGYKAFNRTGISSKSSPLLKASFETTVQFLSEATLAGDIDDLTSPAAKIVLGRPSSSGTG 1682
Query: 1003 LFQLR 1007
F +R
Sbjct: 1683 AFDIR 1687
>gi|430813364|emb|CCJ29287.1| unnamed protein product [Pneumocystis jirovecii]
Length = 1074
Score = 611 bits (1576), Expect = e-172, Method: Compositional matrix adjust.
Identities = 393/1096 (35%), Positives = 588/1096 (53%), Gaps = 157/1096 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL--- 69
+ EA + + SQYLVP G+PL GLIQDHV++G ++ +DTF T+ +Y L+Y L
Sbjct: 29 RTEALLIADTDSQYLVPTSGAPLRGLIQDHVVTGVWMTKKDTFFTKEQYQQLLYGPLRPE 88
Query: 70 --CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
+I TL PTI KP LWTGKQ++STV++NL PK+ + L K
Sbjct: 89 DNASNGGKILTLLPTILKPAVLWTGKQIISTVLLNLKPKNYPGLN--------LISKAKV 140
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
S +Y +H + + + G LLSG+LDK QFG++ YGLVH++++ +G+ A L L+
Sbjct: 141 SGEYWGIHT-QEQIILFKDGYLLSGVLDKSQFGASSYGLVHSIYEVYGSSIAGKFLGVLS 199
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPL--DTDPEI 245
+LFT Y+Q GFT G+ D+ + + D R ++IN E + +GL D I
Sbjct: 200 RLFTKYIQMRGFTCGIDDLCLNSDGDNCRKELINDKSFCTMEDLKSYIGLSGYDKLDDII 259
Query: 246 ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGA 305
+ ++L++ Y + + +D K+ + +T++I + C+P+GL FP NN+Q M S A
Sbjct: 260 LKTKLEQIYRDDEKLQG-LDVIMKNKMSNLTSSIIKECIPKGLYIKFPWNNMQMMTVSSA 318
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KG++VN QISCLLGQ ELEG+R +MVSG++LPSF PY++SPRA G++ GRF+TGI PQ
Sbjct: 319 KGNSVNVSQISCLLGQQELEGRRVPIMVSGKSLPSFKPYDMSPRASGYIYGRFLTGIGPQ 378
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
E++FHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEG+ VHYD TVRDSD S++Q YGED
Sbjct: 379 EYYFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGIRVHYDDTVRDSDGSIVQFHYGED 438
Query: 426 GLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIF 485
LDVTK+++L + FS + C +L +K+ + K + +
Sbjct: 439 SLDVTKQKHLLEFDFSVMN------CR-----SLARKYRI--------------KTIYKY 473
Query: 486 SPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVK 545
H+ ARK + K P++S + P GSISEN S+
Sbjct: 474 LDHKKAVLY------------ARKSIKDPLKY--DPVLSKYSPSRFLGSISENFQQSIEN 519
Query: 546 YTKG---------------RTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPS 590
Y + + S D+F +++ + SL PGE VGVLA QSIGEPS
Sbjct: 520 YISKDPHNFFQKNKNNELIKNNISK-DRFRFLMYMRYQQSLVYPGEAVGVLAGQSIGEPS 578
Query: 591 TQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLA 650
TQMTLNTFHFAG G MNVTLG+PRLREI++ A IKTP+M L + E A A
Sbjct: 579 TQMTLNTFHFAGFGAMNVTLGVPRLREIVLTAGLNIKTPTMTFRILDKISDYE--AEMFA 636
Query: 651 KSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFER 710
K+++++ ++D+++K+ + E++ + Y++K F Y+++ ++ ++ +
Sbjct: 637 KNISKLILSDLVDKIIVTEYILVKTRVK-KYEIKILFFSKSEYKEEYNLTSFELKKVMKI 695
Query: 711 KFLKELEVAIAKRAAQGLKNMNIE------------------QSRDQMEDDVEDDEGEGA 752
FLKEL+ + K + K +N E Q+ + ++D +
Sbjct: 696 YFLKELDKILKKVFKKNSKRINKENIIGKDDATPYIGNTNSFQNSEGLQDQDDSLSDNIM 755
Query: 753 EGAGAALGRVDVSSDEERD---------------EEDAVQSHKKVNQEED---------N 788
G + + + + +R +D + K++ QE++ N
Sbjct: 756 NGVDSDIISMKTTFQSKRTIYNDDSDNDDYDDEDHDDRDDNDKQIIQEKNNSSHSDNDIN 815
Query: 789 DFEEPEDEERMSEREEDDNTSNIGERFKIEFRDSTNVF--VKDVVNQHNIVH---KYSYD 843
D E D E S+ E N NI ++FKI+ ++ +V K + N + ++ +D
Sbjct: 816 DQNEIYDLEVYSDSESYGN--NILDKFKIKENNNDSVIQNTKILENTYYTCSNCTRFEFD 873
Query: 844 KKNHMWCKL-LFLP---------------------------SNLF----EEK-ESKHLLK 870
N WC++ L P S F E K ++ +L
Sbjct: 874 NINGEWCEIELVYPFDMPKLLLVGFIEMACQKTVIREMAGISKCFRIPPESKWDTSRVLC 933
Query: 871 TDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 930
TDG+N I + + ++ LN LY NDI + TYG+EAA VII E+ +F YGI VD R
Sbjct: 934 TDGVNFKGIWEAQDIVSLNTLYSNDITSVLRTYGVEAARNVIITEISKLFKAYGIVVDVR 993
Query: 931 HLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSAR 990
HL L++DYMT G+Y A NR I N S KM++E +++A++ G D L+ PSA+
Sbjct: 994 HLILISDYMTIDGSYKAFNRTSISSNVSPFLKMSYETSCNFLQEATLHGDTDLLKNPSAK 1053
Query: 991 VMLGQECRQGTGLFQL 1006
+++G+ GTG F +
Sbjct: 1054 LVMGKVVDVGTGSFDI 1069
>gi|156839925|ref|XP_001643648.1| hypothetical protein Kpol_1040p3 [Vanderwaltozyma polyspora DSM
70294]
gi|156114268|gb|EDO15790.1| hypothetical protein Kpol_1040p3 [Vanderwaltozyma polyspora DSM
70294]
Length = 1656
Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust.
Identities = 385/1074 (35%), Positives = 578/1074 (53%), Gaps = 144/1074 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCI- 71
+AEA L N SQYL P GSP+ GLIQDH+ +G L+ +D+F TR +Y +Y CI
Sbjct: 639 RAEAFNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQYQQYIYG--CIR 696
Query: 72 ------LNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQ 125
++I T+PP ++KP+PLWTGKQ+++TV++N+TP D I L S K +
Sbjct: 697 PEHGHTTRSKIVTVPPAVFKPVPLWTGKQIITTVLLNVTPSDMPGIN---LNSSNKIKNE 753
Query: 126 F---GSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISL 182
+ GST+ V ++GELL GILDK Q+G+++YG+VH++ + +G + A +
Sbjct: 754 YWGNGSTE---------NDVIFKNGELLCGILDKSQYGASKYGIVHSLHEVYGPDVAAKV 804
Query: 183 LSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDT- 241
LS L +LFT Y+ FT G+ D+ + E ++ R I+ + G +AAC L +T
Sbjct: 805 LSVLGRLFTNYITATAFTCGMDDLRLTDEGNKWRKDILKTSVDTGRQAACEVTNLEKETA 864
Query: 242 --DPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQF 299
D E++ +L+E + +D S ++ +T+ + C+P+G ++ FP N++Q
Sbjct: 865 SDDSELLK-RLEEILRDDNK-SGILDAVTSSKVNSITSKVVSKCVPDGTMKKFPYNSMQA 922
Query: 300 MVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFM 359
M SGAKGS VN QI CLLGQ LEG+R MVSG+TLPSF P+E AGG++ GRF
Sbjct: 923 MALSGAKGSNVNVSQIMCLLGQQALEGRRVPTMVSGKTLPSFKPFETDAMAGGYIKGRFY 982
Query: 360 TGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQ 419
+GI+PQE++FHCMAGREGLIDTAVKTSRSGYLQRCL K LEG+ + YD +VRD D +LIQ
Sbjct: 983 SGIKPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHISYDNSVRDGDGTLIQ 1042
Query: 420 VLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSG 479
LYG D +DVTK +LT QF F +N +LLKK+ S AL+ L +
Sbjct: 1043 FLYGGDSVDVTKESHLT--QFEFCLENYD---------SLLKKYNPS-ALIEHLDVE--- 1087
Query: 480 KPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENL 539
T + ++ Y + K P ++ F P + G++SE
Sbjct: 1088 ----------TALKYSKKASKSRKKNRKVPHYEQNIKY--DPALAKFNPAKYLGAVSEKF 1135
Query: 540 ADSVVKYTKGRTDASHVD------KFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQM 593
D + + D KF ++ K + SL NPGE+VG++A+QS+GEPSTQM
Sbjct: 1136 QDKLELFLDSNASLFESDKSVNEKKFRALMQLKYMRSLINPGESVGIIASQSVGEPSTQM 1195
Query: 594 TLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSM 653
TLNTFHFAG G NVTLGIPR+REI+M A+ AIKTP M +P L D+ + +A+ +KS+
Sbjct: 1196 TLNTFHFAGHGAANVTLGIPRMREIIMTASAAIKTPQMTLPILDDVS--DDQADVFSKSI 1253
Query: 654 TRITMADVLEKVKIKEWL--EISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERK 711
+++ +++V++KV + E + S +Y + F + Y ++ V ++ K
Sbjct: 1254 SKVLLSEVIDKVIVTETIGSSASDSNSRSYVVNMNFFDKNEYDEEYDVSKEELQKVISDK 1313
Query: 712 FLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRVDVS--SDEE 769
FL+ LEVAI K I++ + D+ G + AL V+ S S E+
Sbjct: 1314 FLRALEVAIVKE---------IKKQKKTTSADI----GIAIPKSQLALASVEGSTRSSED 1360
Query: 770 RDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNTSNIGE---------------- 813
DEE QS K+ Q +++P DE+ + E + +S+ GE
Sbjct: 1361 NDEE---QSRKRTKQAV--SYDDP-DEDEIETMREAEKSSDEGELDSDKESESDDDESES 1414
Query: 814 -------RFKIEFRDSTNVFVKD----VVNQHNIVHKYSYDKKNHMWC-----------K 851
+ + N +D +++ H + KY++D + WC K
Sbjct: 1415 DEEMTDVNENVSSNKNLNKSQRDRQSAIISNHKFISKYNFDDEAGKWCEFKLDLAADTEK 1474
Query: 852 LL------------------FLPSNLFEEKES-KHLLKTDGINVNFISQYRHLLDLNKLY 892
LL F+ + E E+ K +L T+G+N + + ++ +
Sbjct: 1475 LLMVNIVEDICRKTVIRQVPFIDRCVHPEPENGKRVLVTEGVNFQAMWDQEAFIGVDGIT 1534
Query: 893 VNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNG 952
ND+ + TYG+EAA I+ E+ NVF+ Y I V RHL L+AD MT GTY+A NR G
Sbjct: 1535 SNDVSAVLKTYGVEAARNTIVNEINNVFSRYAISVSFRHLDLIADMMTRQGTYLAFNRQG 1594
Query: 953 IRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+ + S + KM++E + + +A + + L++PSAR++LG+ GTG F +
Sbjct: 1595 METSTSSLMKMSYETTCQFLTKAVLDNENEELKSPSARIVLGKLNNVGTGAFDV 1648
>gi|444320219|ref|XP_004180766.1| hypothetical protein TBLA_0E01930 [Tetrapisispora blattae CBS 6284]
gi|387513809|emb|CCH61247.1| hypothetical protein TBLA_0E01930 [Tetrapisispora blattae CBS 6284]
Length = 1659
Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust.
Identities = 384/1061 (36%), Positives = 577/1061 (54%), Gaps = 122/1061 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCI- 71
+AE+ FL N SQYL P GSP+ GLIQDH+ +G L+ +D+F TR +Y +Y CI
Sbjct: 646 RAESLFLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTNKDSFFTREQYQQYIYG--CIR 703
Query: 72 ------LNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQ 125
+I TLPPTI+KP+PLWTGKQ+++TV++N+TP D I + K +
Sbjct: 704 PEDGHATRAKIVTLPPTIFKPIPLWTGKQIITTVLLNITPSDMPGI-------NLHSKNK 756
Query: 126 FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSC 185
+ +G + V + G LL GILDK Q+GS++YG+VH++ + +G + A +LS
Sbjct: 757 IKNEYWG--KGSNENEVIFKDGALLCGILDKNQYGSSKYGIVHSLHELYGPDVAAKVLSV 814
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDT---D 242
L +LFT Y+ FT G+ D+ + E ++ R I+ + G +AA L DT D
Sbjct: 815 LGRLFTNYITATAFTCGMDDLRLTDEGNKWRRDILKTSVDTGRQAAAEVTNLSKDTPADD 874
Query: 243 PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
PE++ +L+E + +D S ++ +T+ + C+P G ++ FP N++Q M
Sbjct: 875 PELLK-RLEEILRDDNK-SGILDAVTSSKVNAITSKVVSTCVPGGTMKKFPYNSMQAMAL 932
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
SGAKGS VN QI CLLGQ LEG+R MVSG+TLPSF PYE AGG++ GRF +GI
Sbjct: 933 SGAKGSNVNVSQIMCLLGQQALEGRRVPTMVSGKTLPSFKPYETDAMAGGYIKGRFYSGI 992
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
+PQE++FHCMAGREGLIDTAVKTSRSGYLQRCL K LEG+ + YD TVRD D +LI+ LY
Sbjct: 993 KPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHISYDNTVRDGDGTLIEFLY 1052
Query: 423 GEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPN 482
G D +DVTK Y+T QF F +N L+KK+ S AL+ L +S+
Sbjct: 1053 GGDAVDVTKESYMT--QFKFCLENYD---------GLVKKYNPS-ALIEHLNVESA---- 1096
Query: 483 FIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQ--------PLISTFQPDAHFGS 534
K++ L KYRKK + P P+++ + P + GS
Sbjct: 1097 -------LKYSKKAL------------KYRKKHSSVPHYLQNSKYDPVLAKYNPSKYLGS 1137
Query: 535 ISENLADSVVKYTK------GRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGE 588
+SE D + ++ T+ + KF ++ K + SL +PGE+VG++A+QS+GE
Sbjct: 1138 VSEKFQDKLEEFLNENSKLVKSTEGVNEKKFRALMQLKYMRSLIDPGESVGIIASQSVGE 1197
Query: 589 PSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANR 648
PSTQMTLNTFHFAG G NVTLGIPR+REI+M A+ +IKTP M +P L D+ ++A
Sbjct: 1198 PSTQMTLNTFHFAGHGAANVTLGIPRMREIIMTASSSIKTPQMNLPILNDVSN--QQAET 1255
Query: 649 LAKSMTRITMADVLEKVKIKEWLEISPEPH--MNYQMKFCFIPAHMYRDKTSVKPSKIID 706
KS+T++ ++ V +KV + E + Y + F Y ++ + ++
Sbjct: 1256 FCKSITKVLLSQVTDKVTVTETTSSTANSSDARAYVIHMQFFDEEEYSEEYDISKEELQS 1315
Query: 707 HFERKFLKELEVAIAK------RAAQGLKNMNIEQSRDQM---EDDVEDDEGEGAEGAGA 757
KFL LEVAI K R+A+ + + +S+ + E D D + E E
Sbjct: 1316 AISDKFLHLLEVAIIKKIKTHNRSAKADIGIPVPKSQTTLAAVEGDKMDSDNEEEESRKK 1375
Query: 758 ALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNTSNIGERFKI 817
A + D D + DE + ++ +K + EE FE ++ E + ++DD+ + K
Sbjct: 1376 A-KQSDSYDDPDEDEIETMREAEKSSDEE--AFESDKESESDEDMDDDDDVDSDFTESKF 1432
Query: 818 EFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC-----------KLLFLPSNLFEEKESK 866
+S +++++ + KY++D WC KLL + N+ E+ K
Sbjct: 1433 NLNESQLNRQSAIISRNKFIAKYNFDDSKGKWCEFRLELAAETEKLLMV--NIVEDVCRK 1490
Query: 867 HLLK---------------------TDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGI 905
+++ T+G+N + +D++K+ ND+ + TYG+
Sbjct: 1491 SVIREVPNIERCVYPEANNGDRSLITEGVNFQAMWDQDTFIDVDKITSNDVSAVLRTYGV 1550
Query: 906 EAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTF 965
EAA I+ E+ VF+ Y I V RHL L+AD MT GTY+A NR G+ + S + KM++
Sbjct: 1551 EAARNTIVNEIDRVFSTYAISVSSRHLDLIADMMTRQGTYLAFNRQGMETSTSSLMKMSY 1610
Query: 966 EMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
E + + +A + + L +PSAR++LG+ GTG F +
Sbjct: 1611 ETTCQFLTKAVLDNEHEELNSPSARIVLGKLNNVGTGSFDI 1651
>gi|403418854|emb|CCM05554.1| predicted protein [Fibroporia radiculosa]
Length = 1738
Score = 610 bits (1574), Expect = e-171, Method: Compositional matrix adjust.
Identities = 394/1111 (35%), Positives = 586/1111 (52%), Gaps = 162/1111 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL--- 69
+AEA ++ N +QYLVP G PL GLIQDHV++G ++ +D+F TR EY L+Y AL
Sbjct: 674 RAEAMYIANTDNQYLVPTSGKPLRGLIQDHVVAGVWMTAQDSFFTREEYFQLLYGALRPE 733
Query: 70 ---CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKD-KVIIRHGELLSGILDKKQ 125
+ + TLPPTIWKP PLWTGKQ++STV+ N+TP + + H
Sbjct: 734 DEAGHHSGRLLTLPPTIWKPKPLWTGKQIISTVMKNITPSSFEGLNLH------------ 781
Query: 126 FGSTQYGLVHAVWDT-----HVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAI 180
+Q + +W T V GELLSG+LDK FG+T +GLVH+V++ +G + A
Sbjct: 782 ---SQAKVPGHLWGTDSQEDKVIFMDGELLSGVLDKSAFGATDFGLVHSVYELYGPDVAD 838
Query: 181 SLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNAL----G 236
SLL L++LFT +LQ FT + D+ + E + KR +++ +LGT A +
Sbjct: 839 SLLGILSRLFTKFLQHRAFTCRMDDLALTPEGNAKRAELLRNGAQLGTVGATDNFPSLAS 898
Query: 237 LPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANN 296
+ D P ++ S L++ + A +D K L K+T +I C+P GL+ FP N+
Sbjct: 899 VSEDEKPAMLRSLLEDVLRDDNKM-AGLDMTVKGKLAKLTKSIADACMPHGLLRQFPHNH 957
Query: 297 LQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDG 356
+Q M SGAKGS VN QISC LGQ ELEG+R +MVSG+TLPSF P+E AGG+V
Sbjct: 958 MQTMTLSGAKGSAVNAQQISCALGQQELEGRRVPVMVSGKTLPSFKPFETKAIAGGYVAS 1017
Query: 357 RFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLS 416
RF+TG++PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEG+ VHYD TVR SD S
Sbjct: 1018 RFLTGVKPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGVRVHYDNTVRGSDSS 1077
Query: 417 LIQVLYGEDGLDVTKRQYLTDKQFSFLEDN-IKWICSYKVILNLLKKHPLSLALLLLLTF 475
+ Q YG D LDVT++++L QF F+ N + + Y+ P L+ ++
Sbjct: 1078 IYQFHYGGDALDVTRQKHLL--QFEFIARNDVSLVNRYR---------PKELSSVI---- 1122
Query: 476 KSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSI 535
++ +D +++ + D+ K R +K P +S + P + GS
Sbjct: 1123 --------------SEEAVDYMKKVLRYKDRPSK--RDTYK----PALSIYNPSRYLGST 1162
Query: 536 SENLADSVVKYTK----GRTDASHVDK---------------FYDMIFYKNLLSLANPGE 576
SE A+ V +Y K G H ++ F ++ K + SL +PGE
Sbjct: 1163 SERFAEKVEEYVKRNPHGLLRKKHQEEGMQIRRRKPLLPMKHFKLLVNVKYMRSLVDPGE 1222
Query: 577 NVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFL 636
VG+LA+Q +GEPSTQMTLNTFHFAG G NVTLGIPRLREI+M A+ KTPSM +
Sbjct: 1223 AVGLLASQGVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTASTKPKTPSMTMQVR 1282
Query: 637 PDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHM-NYQMKFCFIPAHMYRD 695
+P + N K TR+ ++ +++KV +KE L E ++ ++ F P Y+
Sbjct: 1283 QGVPLSD--INEFCKKATRLALSHLVDKVVVKERLTALGETRTKDFTIELKFYPKAEYQA 1340
Query: 696 KTSVKPSKIIDHFERKF-----------LKELEVAIAKRAAQGLKNMNI-EQSRDQMEDD 743
+ V+P++I+ F +F +K+L+ + + + K + +++ + D
Sbjct: 1341 EYDVQPAEILAAFGSRFPLMFKKEIQSEMKKLDADLKSQMKELGKGKAVRDRAPTRGPDG 1400
Query: 744 VEDDEGEGAEGAGAALGRVDVSSDEERDE---EDAVQSHKKVNQEED------------- 787
E D+ + EG GA + D+E E DA + ++ +E
Sbjct: 1401 AEVDDDDANEGGGA------IKDDDEASEVGDGDATAAKRQRQTKEQATYDDDEDDDEME 1454
Query: 788 -NDFEEPEDEERMSERE-----EDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYS 841
++++ E E + + EDD I E E +F+++V + S
Sbjct: 1455 LGEYDDAEIEAAYASQAGDSDMEDDGDIQIDEDLVAEVAKVEGLFMENVPPATSFSFSDS 1514
Query: 842 YDKKNHMWC----KLLFLP-----------------SNLFEEKES------KHLLKTDGI 874
+ KLL + ++ F+ +ES K+ L T+G
Sbjct: 1515 ACTIGLQFSASMPKLLLVGIVEKACVKTVVREIPGITDCFKGEESGPAGDPKYTLTTNGS 1574
Query: 875 NVNFISQYR-----HLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDP 929
N+ + Q+ ++D N +Y NDI+ + YG+EAA I+RE+ VF VY I+VD
Sbjct: 1575 NIPGLWQFACRDADSMIDENGIYSNDIYAILCAYGVEAARATILREIGGVFGVYKIDVDS 1634
Query: 930 RHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSA 989
RHL L+ADYMT G Y NR GI +PS + K ++E + A++ G D L PS
Sbjct: 1635 RHLELIADYMTFDGGYKPFNRRGISTSPSPLLKASYETTAAFLSDATLHGDFDDLTTPSG 1694
Query: 990 RVMLGQECRQGTGLFQLRNREKKKKKVEAKG 1020
+++G+ GTG+F + ++ + +A+G
Sbjct: 1695 NIVMGRLNLTGTGVFDVVMPVAEETRGDAQG 1725
>gi|302696833|ref|XP_003038095.1| hypothetical protein SCHCODRAFT_12868 [Schizophyllum commune H4-8]
gi|300111792|gb|EFJ03193.1| hypothetical protein SCHCODRAFT_12868 [Schizophyllum commune H4-8]
Length = 1717
Score = 610 bits (1574), Expect = e-171, Method: Compositional matrix adjust.
Identities = 390/1101 (35%), Positives = 572/1101 (51%), Gaps = 167/1101 (15%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL--- 69
+AEA+F+ N +QYLVP G+PL GLIQDHV++G ++ +D F R EY L+Y AL
Sbjct: 671 RAEATFIANTDNQYLVPTSGNPLRGLIQDHVVAGVWMTCQDAFFEREEYFQLLYGALRPE 730
Query: 70 --CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPK--DKVIIRHGELLSGILDKKQ 125
+ + I TLPPTIWKP PLWTGKQ++STV+ N+TP D + + + G L
Sbjct: 731 DQTVATSRIVTLPPTIWKPRPLWTGKQIISTVLKNVTPTEFDGITLNAKTKVPGKL---- 786
Query: 126 FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSC 185
+G +A + V GELL G+LDK FG+++YG+VH+V++ +GA+ A LL
Sbjct: 787 -----WG--NASKEDKVIFMDGELLCGVLDKAAFGASEYGIVHSVYELYGADVAGRLLGI 839
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNAL----GLPLDT 241
L++LFT +LQ FT + D+++ D R I+ K + LGTEAA G+ +
Sbjct: 840 LSRLFTKFLQHRAFTCRMDDLILTPNGDATRRDILAKNKELGTEAAIENFPSLKGVAKEE 899
Query: 242 DPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMV 301
P ++ S L E + A +D K+ L +T+ I+ CLP+GL FP N++Q M
Sbjct: 900 VPTVLRSLLGEVLRDDNKM-AGLDVTVKTRLSSLTSKISDACLPDGLYRKFPHNHMQAMT 958
Query: 302 ESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTG 361
+SGAKGS VN QISC LGQ ELEG+R +MVSG+TLPSF +E AGG+V RF+TG
Sbjct: 959 QSGAKGSAVNVRQISCGLGQQELEGRRVPVMVSGKTLPSFKAFETKAIAGGYVASRFLTG 1018
Query: 362 IQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVL 421
I+PQEF+FHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEG+ VHYD TVR SD S+ Q
Sbjct: 1019 IKPQEFYFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGIRVHYDNTVRGSDSSVYQFN 1078
Query: 422 YGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKP 481
YG DGLDVTK+++L QF F+ N ++F + +P
Sbjct: 1079 YGGDGLDVTKQKHLY--QFDFIAQN-------------------------EVSFVNRLRP 1111
Query: 482 NFIFSPHRTKFTMDLLEQWYQ---LDDKARKKYRKKFKACPQPLISTFQPDAHFGSISEN 538
+ + + +K +++ + + + R +F P++S + P + G+ SE
Sbjct: 1112 SEVSTVTDSKLAASYMKKVLKKSLVREGNTPPPRNQF----DPVLSVYNPAKYLGATSEQ 1167
Query: 539 LADSVVKYT----------KGRTDA-------SHVDKFYDMIFYKNLLSLANPGENVGVL 581
A +V +Y KG D V+ F ++ K + SL PGE VG+L
Sbjct: 1168 FATAVGEYAKKNPSKLLLLKGEEDPIKRKKALVKVNNFKTLMNIKYMRSLVEPGEAVGLL 1227
Query: 582 AAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPK 641
A+Q +GEPSTQMTLNTFHFAG G NVTLGIPRLREI+M A++ KTPSM + K
Sbjct: 1228 ASQGVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTASQKPKTPSMTM-------K 1280
Query: 642 LEKKANR-----LAKSMTRITMADVLEKVKIKEWLEISPEP-HMNYQMKFCFIPAHMYRD 695
+ K + K +R+T++ +++ V +KE L + + + + F P Y
Sbjct: 1281 VRKGVSAEDIALFCKRASRLTLSQIVDTVTVKERLVVEGDARRTRFAVDLAFFPRAEYAA 1340
Query: 696 KTSVKPSKIIDHFERKF-----------LKELEVAIAKRAAQGLKNMNIEQSRDQMEDDV 744
+ V+P++I+ F +F LK+L+ + + + K M ++ Q D
Sbjct: 1341 EYDVEPAEILAAFATRFPLTLKKELQAELKKLDADLRAQIQELGKGMKPRETEGQESPDD 1400
Query: 745 EDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKV--------------------NQ 784
ED E + D + DEE + K++ +
Sbjct: 1401 EDGEAAASAPRRRDDDEESEDGDGDADEEKRQRQRKQMATYEDDEDEEDEDEVQGEIGEE 1460
Query: 785 EEDNDFEEPEDEERMSEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYD- 843
E + F ++EE++ + + I + + NVF K N+V +D
Sbjct: 1461 ELEAAFASDDEEEKVQKEVKGAKKRGIAK----QVDKVRNVFKK------NLVQAVDFDF 1510
Query: 844 KKNHMWCKLLF---LPSNLF------------------------------EEKESKHLLK 870
++H ++ F +P LF + E + L
Sbjct: 1511 TESHCTFQIEFSSDMPKLLFVGIVERTCKATVVREIKGITDCFAVKDDSKNKAEPEIKLT 1570
Query: 871 TDGINVNFISQY-----RHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 925
T+G N+ + + ++D + +Y NDI+ + TYG+E A I+RE+ VF Y I
Sbjct: 1571 TNGSNLPGVWDFTADLEESIIDEDDMYSNDIYAILKTYGVEMARAAILREMGGVFGAYNI 1630
Query: 926 EVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLR 985
+VD RHL L+ADYMT G Y NR GI N S + K ++E + A++ G D L
Sbjct: 1631 QVDRRHLELIADYMTFDGGYKPFNRKGISTNSSPLLKASYETTAAFLSDATLYGDYDDLS 1690
Query: 986 APSARVMLGQECRQGTGLFQL 1006
+PS V++G+ R GTG+F +
Sbjct: 1691 SPSGNVVMGKPNRIGTGVFDV 1711
>gi|344302025|gb|EGW32330.1| DNA-directed RNA polymerase I 190 kDa polypeptide [Spathaspora
passalidarum NRRL Y-27907]
Length = 1639
Score = 608 bits (1569), Expect = e-171, Method: Compositional matrix adjust.
Identities = 385/1091 (35%), Positives = 563/1091 (51%), Gaps = 168/1091 (15%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCI- 71
KAEA L N +QYL P GSPL GLIQDH+ +G L+ +DTF TR Y LVY CI
Sbjct: 612 KAEALNLANTDNQYLTPTSGSPLRGLIQDHISAGVWLTSKDTFFTREIYQQLVYG--CIR 669
Query: 72 ------LNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQ 125
I T+PP ++KP LWTGKQV++T+++N+ P G ++ K +
Sbjct: 670 PEDGHTTRNRIITVPPAVFKPQQLWTGKQVITTILLNIKPD-------GVPGVNLISKNK 722
Query: 126 FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSC 185
S +G + V ++GELL GILDK Q+G++QYG+VH++ + +G A LS
Sbjct: 723 IKSDYWGA--GSTENDVIFKNGELLCGILDKSQYGASQYGIVHSLHEVYGPTVAGKALSV 780
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDT---D 242
L +LFT Y+ FT G+ D+ + E + R +I+ ++ +G AA L DT D
Sbjct: 781 LGRLFTNYIMMTAFTCGMDDLRLTNEGNEWRKEILKQSVDIGRVAAAEVTNLDQDTSNHD 840
Query: 243 PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
PE++ +L+E + +D +S ++ +T+ + C+P+G ++ FP N++Q M
Sbjct: 841 PELLR-RLEEILRDDNKL-GILDAITQSKVNTITSQVVSKCVPDGTMKRFPYNSMQAMAL 898
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
SGAKGS VN QI CLLGQ LEG+R +MVSG+TLPSF P+E RAGG++ GRF +GI
Sbjct: 899 SGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPFETDARAGGYIKGRFYSGI 958
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
+PQE++FHCMAGREGLIDTAVKTSRSGYLQRCL K LEG+ V YD +VRD D +LIQ LY
Sbjct: 959 RPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSVRDGDGTLIQFLY 1018
Query: 423 GEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPN 482
G D +D TK+ ++ QF F DN LL K
Sbjct: 1019 GGDAIDTTKQSHMN--QFKFCADNYDA---------LLAK-------------------- 1047
Query: 483 FIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQ--------PLISTFQPDAHFGS 534
++P +D +E+ K RK +K+ K P P+++ + P + GS
Sbjct: 1048 --YNPGDMTDNLD-VEEALSYSKKVRKSLKKQ-KELPHYEQQIKYDPVMNVYNPAKYLGS 1103
Query: 535 ISENLADSVVK--------YTKGRTDASHV-----DKFYDMIFYKNLLSLANPGENVGVL 581
+SE D + + K + +A KF ++ K + SL NPGE+VG++
Sbjct: 1104 VSEKFQDKLDAFVSENSQIFAKNKEEAKSTGKLTEKKFRALMQLKYMRSLINPGESVGII 1163
Query: 582 AAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPK 641
A+QSIGEPSTQMTLNTFHFAG G NVTLGIPR+REI+M A+ AIKTP M +P L D+
Sbjct: 1164 ASQSIGEPSTQMTLNTFHFAGHGAANVTLGIPRMREIIMTASAAIKTPQMTLPILDDV-- 1221
Query: 642 LEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEP--HMNYQMKFCFIPAHMYRDKTSV 699
+ +A+ KS+ R+ +++ +++V + E S + +Y + F Y + V
Sbjct: 1222 TDDQADAFCKSVARVVLSEFIDRVTVTETTSQSEDGTNSRSYVIHLKFYSKQEYEQEYDV 1281
Query: 700 KPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAAL 759
+ ++ D FL LE I K + ++ D + G +
Sbjct: 1282 EQEQLEDVITTNFLHALEQQIVKEVKK-------QKKPDHLPT------------VGKSA 1322
Query: 760 GRVDVSSDEER-------DEEDAVQSHKKVNQEEDNDFEEPEDE--ERMSEREEDDNTSN 810
G+ D+ S R D+EDA + + N ++ ++ P+DE E M + EE +
Sbjct: 1323 GKTDMESVSGRVMDGTTNDDEDAEEEKMRGNVKQAVSYDGPDDEEIETMKKAEETSDEEM 1382
Query: 811 IGER--------------FKIEFRDSTNVFVK-------DVVNQHNIVHKYSYDKKNHMW 849
K E +N + +V+ HN+V K+++D W
Sbjct: 1383 EDSDSDDSSSDEEEEDVDMKPETAKKSNELSRSAKDRQSEVIASHNMVTKFNFDDDEGEW 1442
Query: 850 C------------KLLFLPSNLFE----------------------EKESKHLLKTDGIN 875
C KLL + N+ E + + LL T+G+N
Sbjct: 1443 CEFQLELNGNETQKLLMV--NIVEDLCRRVVVREIPRIGRCIRPQPDAKGNRLLTTEGVN 1500
Query: 876 VNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLV 935
+ +++N + ND+ + TYG+EAA I+ E+ VF YGI V RHL L+
Sbjct: 1501 FKAMWDQDDFINVNNITSNDVAAVLHTYGVEAARNTIVNEIYRVFDTYGISVSSRHLDLI 1560
Query: 936 ADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQ 995
AD MT GTY+A NR GI S KM++E + + +A + G + L +PSAR++LG+
Sbjct: 1561 ADMMTREGTYLAFNRQGIDSGTSAFMKMSYETTCQFLTKAVLDGNREELESPSARIVLGK 1620
Query: 996 ECRQGTGLFQL 1006
GTG F +
Sbjct: 1621 LSNVGTGSFDV 1631
>gi|50555960|ref|XP_505388.1| YALI0F13783p [Yarrowia lipolytica]
gi|49651258|emb|CAG78195.1| YALI0F13783p [Yarrowia lipolytica CLIB122]
Length = 1628
Score = 608 bits (1568), Expect = e-171, Method: Compositional matrix adjust.
Identities = 379/1074 (35%), Positives = 570/1074 (53%), Gaps = 141/1074 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA L N SQYL P G PL GLIQDH+ +G L+ +DTF TR EY L+Y L
Sbjct: 608 RAEALLLANTDSQYLTPTSGKPLRGLIQDHISAGVLLTSKDTFFTRQEYQQLIYGCLRPE 667
Query: 73 NT------EIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQF 126
+ I T+PP + KP+PLWTGKQV++TV+ N+TP I R G L+ K +
Sbjct: 668 DGHTADVGRIHTVPPAVIKPVPLWTGKQVITTVLKNITP----IGRPGLNLNA---KNKV 720
Query: 127 GSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCL 186
+ +G + V ++GEL+ GILDK Q+G+ YGLVH++ + +GA A LLS L
Sbjct: 721 KNEYWG--EGSTENSVIFQNGELVCGILDKSQYGAADYGLVHSIHEIYGAHIAGKLLSVL 778
Query: 187 AKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEI- 245
+LFT Y+ +G T G+ D+ + E + RT + A+ +G +AA LP DTDPE
Sbjct: 779 GRLFTRYVMNIGLTCGMDDLWLTAEGNNWRTTTLEGAKDVGVKAAAEVTNLPEDTDPEDP 838
Query: 246 -ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESG 304
+ +L+E + +D +S ++ VT ++ C+P G ++ FP N +Q M SG
Sbjct: 839 ELLKRLEEILRDDNKL-GILDAISQSKVNAVTTSVVSQCIPNGTMKRFPQNAMQRMALSG 897
Query: 305 AKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQP 364
AKGS VN QI C LGQ LEG+R +MVSG+TLP+F P+E AGGFV RF +GI+P
Sbjct: 898 AKGSNVNVSQIMCGLGQQALEGRRVPVMVSGKTLPAFKPFETDAIAGGFVASRFFSGIRP 957
Query: 365 QEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGE 424
QE++FHCMAGREGLIDTAVKTSRSGYLQRCL+K LEG+ YD TVRDSD +LIQ +YG
Sbjct: 958 QEYYFHCMAGREGLIDTAVKTSRSGYLQRCLIKQLEGVHSTYDNTVRDSDGALIQFMYGG 1017
Query: 425 DGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFI 484
D +DV K +L +QF F +N + ++ KH + G + +
Sbjct: 1018 DSVDVIKESHL--QQFDFCVENFQA---------MVHKH------------QPGGNVDNL 1054
Query: 485 FSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVV 544
+ ++ ++ + A P+P IS + P + GS+SE ++S+
Sbjct: 1055 DTDTAIEYAKKAKKKAKKATSDAE---------LPEPTISLYNPAKYLGSVSEEFSNSLE 1105
Query: 545 KYTKGRTD----------ASHVD------KFYDMIFYKNLLSLANPGENVGVLAAQSIGE 588
Y R D +++ D KF ++ K + S NPGE +G++A+QSIGE
Sbjct: 1106 AYIASRPDVFPPKKSGKKSTYADQGVTEKKFRSLMQLKYMQSTVNPGEALGIIASQSIGE 1165
Query: 589 PSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANR 648
PSTQMTLNTFHFAG G NVTLGIPR+REI+M A+K+I TP M +P LPD+ E A
Sbjct: 1166 PSTQMTLNTFHFAGHGAANVTLGIPRMREIIMTASKSIMTPQMSLPVLPDVSDAE--AET 1223
Query: 649 LAKSMTRITMADVLEKVKIKEWLE---ISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKII 705
+S+ R+ +++ ++ +++ E ++ ++ +K F A Y ++ V P +
Sbjct: 1224 FCRSVQRVVLSEFVDYIEVTEKTRAETMTQGAARSFDVKMQFYTAKEYEEEYDVSPDMLK 1283
Query: 706 DHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALG----- 760
+L +E A+ K L++ + + D +V++ + A
Sbjct: 1284 KRIALHYLNRIEKAVVKE----LRDQRVSKEVDGAITEVKETRSKAPSKASDEADDEDDD 1339
Query: 761 ------------RVDVSSDEERDE----EDAVQSHKKVNQEEDNDFEEPEDEERMSEREE 804
+ VS DE +E +DAV+ + + D+D E E MS+ ++
Sbjct: 1340 EDEDEAKEKRSTKQSVSYDEGEEEHKTAKDAVEGDSDSDSDSDSDS---EGENVMSDTDD 1396
Query: 805 DDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKL-LFLPSN----- 858
D +E D D+++++ + + +DK+ WC + LP +
Sbjct: 1397 SD----------VEMADDEEEGEDDILSRYKTIKSFKFDKQGE-WCTFTIMLPGDTKKLL 1445
Query: 859 -----------------------LFEEKES--KHLLKTDGINVNFISQYRHLLDLNKLYV 893
+F + +S L T+G+N + + +D+N +Y
Sbjct: 1446 MVNILEDLCRSQVVREIPNIGRCIFPKADSPKDRKLTTEGVNFREMWEQGEFIDVNAIYS 1505
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
NDI+ + TYG+EAA +++E+ NVF Y I V+ RHL L+AD MT GTY+A NR G+
Sbjct: 1506 NDIYAVLKTYGVEAARNTMVQEINNVFKTYAITVNLRHLELIADMMTREGTYLAFNRMGV 1565
Query: 954 RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLR 1007
N S KM++E + +A + G D+L +PSAR+++G+ GTG F ++
Sbjct: 1566 DSNTSPFLKMSYETTCGFLTKAVLDGGCDALESPSARIVIGRLSGVGTGSFDVK 1619
>gi|336386619|gb|EGO27765.1| hypothetical protein SERLADRAFT_446992 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1710
Score = 608 bits (1568), Expect = e-171, Method: Compositional matrix adjust.
Identities = 396/1090 (36%), Positives = 566/1090 (51%), Gaps = 156/1090 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALC-- 70
+AEA F+ N +QYLVP G PL GLIQDHV++G ++ +D F +R EY L+Y AL
Sbjct: 675 RAEAMFIANTDNQYLVPTSGKPLRGLIQDHVVAGVWMTCQDAFFSREEYFQLLYGALRPE 734
Query: 71 --ILNT-EIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
NT + T+PPTIWKP PLWTGKQ++STV+ N+TP + + LD K
Sbjct: 735 DDSHNTGRLVTMPPTIWKPKPLWTGKQIISTVLKNITPSNAGGLN--------LDSKA-- 784
Query: 128 STQYGLVHAVW-----DTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISL 182
+ +W + V GELL G+LDK FG+T +GLVH++++ +GA+ A +L
Sbjct: 785 ----KVPGHLWGKDSSEDKVIFMDGELLCGVLDKSAFGATDFGLVHSIYELYGADIAGNL 840
Query: 183 LSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACN---ALGLPL 239
L L++LFT +LQ FT + D+ + D +R ++ + LGTE A +L
Sbjct: 841 LGILSRLFTKFLQHRAFTCRMDDLALTPAGDARRMDLLRRGSNLGTEGAIENFPSLSKTA 900
Query: 240 DTD-PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQ 298
D P +S+ L++ + A +D K+ L +T +I C+P GL+ FP N++Q
Sbjct: 901 KADIPAALSALLEDVLRDDNKM-AGLDVTVKTKLSTLTKSIADACMPHGLLRKFPHNHMQ 959
Query: 299 FMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRF 358
M SGAKGS VN QISC LGQ ELEG+R +MVSG+TLPSF +E AGG+V RF
Sbjct: 960 TMTLSGAKGSAVNAQQISCALGQQELEGRRVPVMVSGKTLPSFKTFETKAIAGGYVASRF 1019
Query: 359 MTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLI 418
+TG++PQEF+FHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEG+ VHYD TVR SD S+
Sbjct: 1020 LTGVKPQEFYFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGIRVHYDHTVRGSDSSIY 1079
Query: 419 QVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSS 478
Q YG D LDVTK+++L +QF F+ N LTF +
Sbjct: 1080 QFQYGGDALDVTKQKHL--RQFEFVARND-------------------------LTFLNL 1112
Query: 479 GKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISEN 538
+P I ++ +++ + +R + P + + P + GS SEN
Sbjct: 1113 YRPKDIAGLVNDSDAVEYMKKVLKKKSASRDAF--------TPTLDLYSPSRYLGSTSEN 1164
Query: 539 LADSVVKYTKGRTD----ASHVD---------------KFYDMIFYKNLLSLANPGENVG 579
A ++ KY K D VD +F ++ K + SL PGE VG
Sbjct: 1165 FAGAIDKYVKANPDKLFKPKDVDAELPIKRRRQFIPTKRFRLLMNVKYMRSLVEPGEAVG 1224
Query: 580 VLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDM 639
+LA+Q +GEPSTQMTLNTFHFAG G NVTLGIPRLREI+M A++ KTPSM + +
Sbjct: 1225 LLASQGVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTASQKPKTPSMTMEVRSGI 1284
Query: 640 PKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEP-HMNYQMKFCFIPAHMYRDKTS 698
P+++ + K +R+ ++ V++ V +KE L + E + + F P YR++
Sbjct: 1285 PQID--IDTFCKKASRLALSQVVDDVTVKERLTVKGEARRTEFVIDIAFFPKEEYREEYD 1342
Query: 699 VKPSKIIDHFERKF----LKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEG 754
V+P++I+ F KF KE++ + K A LKN E + + + E E
Sbjct: 1343 VEPAEILASFATKFPLILKKEIQNEMKKLDAD-LKNQIAELGKGKAAKEGVAVENEADGD 1401
Query: 755 AGAALGRVDVSSDEERDEE---DAVQSHKKVNQEEDNDFEEPEDEER------------M 799
G A R DEER E+ DA + + ++E +E ED E
Sbjct: 1402 GGEAPSR--DKEDEERSEQGDGDAEDAKRARQRKEQTSYESDEDSESGELDDAAIEAAYA 1459
Query: 800 SEREE-----DDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC---- 850
S+ E+ D+ T IG RD ++ V D+ ++ H + K C
Sbjct: 1460 SQGEDDVEHGDNGTKKIGR--PTTLRDQVDI-VTDLFKRN--FHSATSFKFTESGCSIQL 1514
Query: 851 -------KLLFL----------------------PSNLFEEKESKHLLKTDGINVNFISQ 881
KLL + S + + K L T+G N I
Sbjct: 1515 EFGADFPKLLLVGIIERTCRKTIIREIPGITECFSSVVKDHGMEKIRLTTNGSNFRGIWL 1574
Query: 882 Y-----RHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVA 936
+ +++ N +Y NDI+ + TYG+E A I+RE+ VF Y I+VD RHL L+A
Sbjct: 1575 FASGADESIIEDNNIYSNDIYAILKTYGVEMARAAILREMGGVFDAYKIDVDFRHLELIA 1634
Query: 937 DYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQE 996
DYMT G Y NR G+ NPS + K ++E + A++ G D L PS +++G+
Sbjct: 1635 DYMTFDGGYKPFNRKGLSTNPSPLLKASYETTAAFLSDATLYGDFDDLTTPSGNIVIGRP 1694
Query: 997 CRQGTGLFQL 1006
+ GTG+F +
Sbjct: 1695 NQTGTGVFDV 1704
>gi|409049783|gb|EKM59260.1| hypothetical protein PHACADRAFT_169748 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1712
Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust.
Identities = 408/1087 (37%), Positives = 570/1087 (52%), Gaps = 151/1087 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA + N +QYLVP G PL GLIQDHV++G ++ +DTF +R EY L+Y AL
Sbjct: 677 RAEAMMIANTDNQYLVPTSGKPLRGLIQDHVVAGVWMTAQDTFFSREEYFQLLYGALRPE 736
Query: 73 NTE------IRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQF 126
+ + TL PTIWKP PLWTGKQ++STV++N+TP + + L K
Sbjct: 737 GSSGHHSGRLVTLSPTIWKPKPLWTGKQIISTVMLNITPSNAKGLN--------LTAKAK 788
Query: 127 GSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCL 186
Q + DT V I GELL G+LDK FG+T +GLVH+V++ +GA+ A +LL L
Sbjct: 789 VPGQLWGKDSKEDT-VIIVDGELLCGVLDKSAFGATDFGLVHSVYELYGADVAGTLLGVL 847
Query: 187 AKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNAL----GLPLDTD 242
++LFT +LQ FT V D+ + E R +++ K LGTE A LP +
Sbjct: 848 SRLFTKFLQHRAFTCRVDDLALTPEGSAMRKELVRKGADLGTEGAIENFPSLASLPDNEK 907
Query: 243 PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
P + + L++ + A +D KS L K+T +I +P GL+ FP N++Q M +
Sbjct: 908 PAQLRALLEDVLRDDNKM-AGLDMTVKSKLAKLTKSIADAVMPHGLLRQFPHNHMQAMTQ 966
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
SGAKGS VN QISC LGQ ELEG+R +MVSG+TLPSF P+E AGG+V RF+TG+
Sbjct: 967 SGAKGSAVNAQQISCALGQQELEGRRVPVMVSGKTLPSFKPFETKAIAGGYVASRFLTGV 1026
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
+PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEG+ HYD +VR SD SL Q Y
Sbjct: 1027 KPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGIRAHYDNSVRGSDGSLYQFHY 1086
Query: 423 GEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPN 482
G DG+DVT++++L QF F N + + + K+ KP
Sbjct: 1087 GGDGMDVTRQKHLY--QFDFFARNEE---------SAVNKY----------------KPR 1119
Query: 483 FIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADS 542
+ PH L E+ + K K RK +P +ST+ P GS SE A+
Sbjct: 1120 DVL-PH---IDQKLAEEHMK---KLLKSKRKGLDPG-EPTLSTYNPARFLGSTSEKFAEK 1171
Query: 543 VVKYT-----KGRTDAS--------HVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEP 589
V +Y K + DA+ H F ++ K + SL +PGE VG+LA+Q +GEP
Sbjct: 1172 VEEYAKLLKEKTKQDANIKMRKPYIHPRHFKLLMNVKYMRSLVDPGEAVGLLASQGVGEP 1231
Query: 590 STQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPF-----LPDMPKLEK 644
STQMTLNTFHFAG G NVTLGIPRLREI+M A++ KTPSM + L D+ K
Sbjct: 1232 STQMTLNTFHFAGHGAANVTLGIPRLREIVMTASRKPKTPSMTMAVRKGVSLKDIDTFCK 1291
Query: 645 KANRLAKSMTRITMADVLEKVKIKEWLEISPEPHM-NYQMKFCFIPAHMYRDKTSVKPSK 703
+A RL T++ V++KV +KE L + ++ ++ F Y+ + V+PS+
Sbjct: 1292 RAGRL-------TLSQVVDKVTVKETLASNGGSRTKDFSIELSFYLRQDYQAEYDVQPSE 1344
Query: 704 IIDHFERKF-----------LKELEVAIAKRAAQGLKNMNIEQ----------------- 735
I+ F KF LK+L+ + + + K ++ +
Sbjct: 1345 ILSAFGTKFPLILKREIQNELKKLDQDMKSQMGEIGKGKSVRERVGEAEAETGGEEFEEG 1404
Query: 736 -----SRDQMEDDVEDDEGEGAEGAGAALGRVDVSSDE-------------ERDEEDAVQ 777
RD ED+ E +G AA R S ++ E+ ++DA++
Sbjct: 1405 RTGRGGRD------EDETSEVGDGDAAATKRQRQSEEQATYSDDEDEDDAMEQYDDDAIE 1458
Query: 778 -SHKKVNQEEDNDFE-----EPEDEERMSEREEDDNTSNIGERFKIEFRDSTNV----FV 827
++ + +D D E ED +E E N FRDS F
Sbjct: 1459 AAYASAGESDDEDVGADNAMEVEDLSNQAEAVEQTFMQNFSYTKAFSFRDSGCTIDLQFS 1518
Query: 828 KDVVNQH--NIVHKYSYDKKNHMWCKLLFLPSNLFEEK-ESKHLLKTDGINVNFISQY-- 882
D+ IV K ++ N EE E+ + + T+G N++ I Q+
Sbjct: 1519 SDMPKLLLVGIVEKTCTKTVIREVPGIMDCFKNKEEENGETTYKMTTNGSNISGIWQFAC 1578
Query: 883 ---RHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYM 939
L+D N + NDI+ + +TYG+EAA I+REV VF VY I+VD RHL L+ADYM
Sbjct: 1579 GDEESLIDENSIESNDIYAILATYGVEAARAAILREVGGVFNVYKIDVDSRHLELIADYM 1638
Query: 940 THSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQ 999
T G Y NR+GI NPS + K ++E + A++ G D L PS ++ G+
Sbjct: 1639 TFDGGYKPFNRSGISTNPSPLLKASYETTASFLSDAALHGDFDDLTTPSGNIVAGRLSLT 1698
Query: 1000 GTGLFQL 1006
GTG+F +
Sbjct: 1699 GTGVFDV 1705
>gi|328854434|gb|EGG03566.1| hypothetical protein MELLADRAFT_75289 [Melampsora larici-populina
98AG31]
Length = 1725
Score = 607 bits (1565), Expect = e-170, Method: Compositional matrix adjust.
Identities = 399/1095 (36%), Positives = 581/1095 (53%), Gaps = 151/1095 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
++EA + N +QYLVP G+PL GLIQDHV+SG ++ +DTF +R +Y ++Y AL
Sbjct: 675 QSEARTIANNDNQYLVPTSGNPLRGLIQDHVVSGVWMTNKDTFFSREDYYQIIYGALRPE 734
Query: 73 NT-----EIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELL--SGILDKKQ 125
N ++ T+ P IWKP PLWTGKQ++ST++ N+TP + G L S + K
Sbjct: 735 NEYTGGGQVLTVSPAIWKPRPLWTGKQIISTILKNITPTNAA----GLYLTSSAKVSGKN 790
Query: 126 FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSC 185
+G +H+ DT V G ++SG++DK Q G++ YGLVH+V D +GAE A LLS
Sbjct: 791 WG------IHSSEDT-VQFDAGYMISGVIDKSQIGASPYGLVHSVHDLYGAEVAGRLLSI 843
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLD--TDP 243
++LFT YLQ FT + D+ + + R++++N+ G A + +GL + + P
Sbjct: 844 FSRLFTKYLQHRAFTCRMDDLFLTGHGNAIRSRLLNETSVRGRRATLSMVGLSEEEVSTP 903
Query: 244 E---IISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFM 300
+ + ++L+E + A +D Y ++ I+ CLP GL +PFP NN+Q M
Sbjct: 904 QGKKDLQARLEEVLRDDMKM-AALDNSYNVETSELKTKIDNQCLPAGLYKPFPWNNMQMM 962
Query: 301 VESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMT 360
SGAKG+TVN QISCLLGQ LEG+R +MVSG+TLPSF +E +PRAGGFV RF+T
Sbjct: 963 TGSGAKGTTVNASQISCLLGQQALEGRRVPVMVSGKTLPSFKAFETAPRAGGFVAQRFLT 1022
Query: 361 GIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQV 420
GI+PQE++FHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEG+ VHYD TVR+SD S+IQ
Sbjct: 1023 GIRPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGIRVHYDHTVRNSDSSVIQF 1082
Query: 421 LYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGK 480
YG+D LDVTK+++L +FS L +L+++
Sbjct: 1083 HYGDDSLDVTKQKHLYQFEFSLLNR-----------ASLIER------------------ 1113
Query: 481 PNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLA 540
+ P +D D + K ++ P P +S + P +FGS SE
Sbjct: 1114 ----YQPTEILGRLDGETATNHADSIIKAKKSGTNQSLPLPTMSIYSPTLYFGSTSEKFT 1169
Query: 541 DSVVKY------------TKGRTDASHVDKFYDMI---FYKNLL------SLANPGENVG 579
++V KY K R D ++I F+++L+ + +PGE VG
Sbjct: 1170 EAVNKYKVENPKRLLRVKKKYRADWPAYVNSNELIPTDFFRSLMQIRFMKGIVDPGEAVG 1229
Query: 580 VLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDM 639
+LA+Q +GEPSTQMTLNTFHFAG G NVTLGIPRLREI+M A+ IKTP+M+ P
Sbjct: 1230 LLASQGVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTASTKIKTPTMKFPI---- 1285
Query: 640 PKLEKKANRLAKSM---TRITMADVLEKVKIKEWLEI---SPEPHMNYQMKFCFIPAHMY 693
K E A AK + TR+T++ V+++V +KE L + E +Y +K F P+ Y
Sbjct: 1286 -KAEVTAEEFAKFLKRTTRVTLSQVVDEVIVKETLTSKTQNGERFKSYTVKLQFYPSDEY 1344
Query: 694 RDKTSVKPSKIIDHFERKFLKELEVAIA---KRAAQGLKNMNIEQSRDQMEDDVEDDEGE 750
+ S+ + R F+ LE I K A +KN + + GE
Sbjct: 1345 CAEYSITVEAVFKSVVRAFIPLLERRIKAEFKTRALDIKNQFATIGKGKSIAARTGTTGE 1404
Query: 751 GAEG----AGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDND----------------F 790
+G + RVD + E+ D +D ++ +K + D D
Sbjct: 1405 DGDGEDVNEDVPVRRVDEADIEDGDADDQRRARQKHEVDYDQDSSDGSENGVGGLNDKRL 1464
Query: 791 EEPEDEERMSEREEDDNTSNIGERFKIEFRD-STNVFVK---DVVNQHNIVHKYSYDKKN 846
E D E +E D+ ++ E + E ++ NVF+K +V + + V +D++
Sbjct: 1465 REITDLEDGESDDETDSMADSDEEKEQEIKERRANVFLKLKEEVESDSSYVTTIEFDEEK 1524
Query: 847 HMWC-----------KLLFL-------PSNLFEE----------------KESKHLLKTD 872
C KLL + S + +E ++ T+
Sbjct: 1525 GNSCEFTMNFSSTSHKLLLIGIIEKCCQSAVIQEIPGIGRALSAQSDKPHQDKSQYCVTE 1584
Query: 873 GINVNFISQYRH-LLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRH 931
G N+ + + ++++N+LY NDI + TYG+EAA IIRE+ VF VYGI VD RH
Sbjct: 1585 GANLKAAWSFGYEIIEMNQLYSNDISAILRTYGVEAARAAIIREMSGVFGVYGIGVDYRH 1644
Query: 932 LSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARV 991
L+++ADYMT G Y A NR G+ + S K ++E + A++ G D L +PSA +
Sbjct: 1645 LTVIADYMTSEGGYKAFNRPGLANHVSPFLKASYETTTTFLTDATIFGDFDDLMSPSASI 1704
Query: 992 MLGQECRQGTGLFQL 1006
++GQ R GT F L
Sbjct: 1705 VMGQAPRCGTNSFDL 1719
>gi|336373803|gb|EGO02141.1| hypothetical protein SERLA73DRAFT_86356 [Serpula lacrymans var.
lacrymans S7.3]
Length = 1688
Score = 607 bits (1564), Expect = e-170, Method: Compositional matrix adjust.
Identities = 396/1095 (36%), Positives = 567/1095 (51%), Gaps = 161/1095 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALC-- 70
+AEA F+ N +QYLVP G PL GLIQDHV++G ++ +D F +R EY L+Y AL
Sbjct: 648 RAEAMFIANTDNQYLVPTSGKPLRGLIQDHVVAGVWMTCQDAFFSREEYFQLLYGALRPE 707
Query: 71 --ILNT-EIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
NT + T+PPTIWKP PLWTGKQ++STV+ N+TP + + LD K
Sbjct: 708 DDSHNTGRLVTMPPTIWKPKPLWTGKQIISTVLKNITPSNAGGLN--------LDSKA-- 757
Query: 128 STQYGLVHAVW-----DTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISL 182
+ +W + V GELL G+LDK FG+T +GLVH++++ +GA+ A +L
Sbjct: 758 ----KVPGHLWGKDSSEDKVIFMDGELLCGVLDKSAFGATDFGLVHSIYELYGADIAGNL 813
Query: 183 LSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACN---ALGLPL 239
L L++LFT +LQ FT + D+ + D +R ++ + LGTE A +L
Sbjct: 814 LGILSRLFTKFLQHRAFTCRMDDLALTPAGDARRMDLLRRGSNLGTEGAIENFPSLSKTA 873
Query: 240 DTD-PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQ 298
D P +S+ L++ + A +D K+ L +T +I C+P GL+ FP N++Q
Sbjct: 874 KADIPAALSALLEDVLRDDNKM-AGLDVTVKTKLSTLTKSIADACMPHGLLRKFPHNHMQ 932
Query: 299 FMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRF 358
M SGAKGS VN QISC LGQ ELEG+R +MVSG+TLPSF +E AGG+V RF
Sbjct: 933 TMTLSGAKGSAVNAQQISCALGQQELEGRRVPVMVSGKTLPSFKTFETKAIAGGYVASRF 992
Query: 359 MTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLI 418
+TG++PQEF+FHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEG+ VHYD TVR SD S+
Sbjct: 993 LTGVKPQEFYFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGIRVHYDHTVRGSDSSIY 1052
Query: 419 QVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSS 478
Q YG D LDVTK+++L +QF F+ N LTF +
Sbjct: 1053 QFQYGGDALDVTKQKHL--RQFEFVARND-------------------------LTFLNL 1085
Query: 479 GKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISEN 538
+P I ++ +++ + +R + P + + P + GS SEN
Sbjct: 1086 YRPKDIAGLVNDSDAVEYMKKVLKKKSASRDAF--------TPTLDLYSPSRYLGSTSEN 1137
Query: 539 LADSVVKYTKGRTD----ASHVD---------------KFYDMIFYKNLLSLANPGENVG 579
A ++ KY K D VD +F ++ K + SL PGE VG
Sbjct: 1138 FAGAIDKYVKANPDKLFKPKDVDAELPIKRRRQFIPTKRFRLLMNVKYMRSLVEPGEAVG 1197
Query: 580 VLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDM 639
+LA+Q +GEPSTQMTLNTFHFAG G NVTLGIPRLREI+M A++ KTPSM + +
Sbjct: 1198 LLASQGVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTASQKPKTPSMTMEVRSGI 1257
Query: 640 PKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEP-HMNYQMKFCFIPAHMYRDKTS 698
P+++ + K +R+ ++ V++ V +KE L + E + + F P YR++
Sbjct: 1258 PQID--IDTFCKKASRLALSQVVDDVTVKERLTVKGEARRTEFVIDIAFFPKEEYREEYD 1315
Query: 699 VKPSKIIDHFERKF----LKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEG 754
V+P++I+ F KF KE++ + K A LKN E + + + E E
Sbjct: 1316 VEPAEILASFATKFPLILKKEIQNEMKKLDAD-LKNQIAELGKGKAAKEGVAVENEADGD 1374
Query: 755 AGAALGRVDVSSDEERDEE---DAVQSHKKVNQEEDNDFEEPEDEER------------M 799
G A R DEER E+ DA + + ++E +E ED E
Sbjct: 1375 GGEAPSR--DKEDEERSEQGDGDAEDAKRARQRKEQTSYESDEDSESGELDDAAIEAAYA 1432
Query: 800 SEREE-----DDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC---- 850
S+ E+ D+ T IG RD ++ V D+ ++ H + K C
Sbjct: 1433 SQGEDDVEHGDNGTKKIGR--PTTLRDQVDI-VTDLFKRN--FHSATSFKFTESGCSIQL 1487
Query: 851 ---KLLF-------LPSNLFEEKESKHLLK------------------------TDGINV 876
K LF L + E K +++ T+G N
Sbjct: 1488 EASKTLFGADFPKLLLVGIIERTCRKTIIREIPGITECFSSVVKDHGMEKIRLTTNGSNF 1547
Query: 877 NFISQY-----RHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRH 931
I + +++ N +Y NDI+ + TYG+E A I+RE+ VF Y I+VD RH
Sbjct: 1548 RGIWLFASGADESIIEDNNIYSNDIYAILKTYGVEMARAAILREMGGVFDAYKIDVDFRH 1607
Query: 932 LSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARV 991
L L+ADYMT G Y NR G+ NPS + K ++E + A++ G D L PS +
Sbjct: 1608 LELIADYMTFDGGYKPFNRKGLSTNPSPLLKASYETTAAFLSDATLYGDFDDLTTPSGNI 1667
Query: 992 MLGQECRQGTGLFQL 1006
++G+ + GTG+F +
Sbjct: 1668 VIGRPNQTGTGVFDV 1682
>gi|150866448|ref|XP_001386054.2| alpha subunit of RNA polymerase I [Scheffersomyces stipitis CBS 6054]
gi|149387704|gb|ABN68025.2| alpha subunit of RNA polymerase I [Scheffersomyces stipitis CBS 6054]
Length = 1644
Score = 606 bits (1563), Expect = e-170, Method: Compositional matrix adjust.
Identities = 384/1093 (35%), Positives = 564/1093 (51%), Gaps = 170/1093 (15%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCI- 71
KAEA L N SQY+ P GSPL GLIQDH+ +G L+ +D+F TR Y L+Y CI
Sbjct: 616 KAEALNLANTDSQYITPTSGSPLRGLIQDHISAGVWLTSKDSFFTREIYQQLIYG--CIR 673
Query: 72 ------LNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQ 125
+++ T+PP ++KP PLWTGKQV++++++N+TP + I ++ K +
Sbjct: 674 PEDGHSTRSKLITVPPAVFKPQPLWTGKQVITSILLNITPDNVPGIN-------LVSKNK 726
Query: 126 FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSC 185
+ +G + V ++GELL GILDK Q+G+TQ+G+VH++ + +GA A LS
Sbjct: 727 VKNEYWG--EGSNENEVLFKNGELLCGILDKSQYGATQFGIVHSLHEVYGAAVAGKALSV 784
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDT---- 241
L +LFT Y+ FT G+ D+ + +E + R I+ ++ +G AA L +
Sbjct: 785 LGRLFTNYIMMTAFTCGMDDLRLTEEGNSWRRDILKQSVDIGRVAAAEVTNLDSKSTGNH 844
Query: 242 DPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMV 301
DPE++ +L+E + +D +S ++ +T+ + C+P+G ++ FP N++Q M
Sbjct: 845 DPELLR-RLEEILRDDNKL-GILDAVTQSKVNTITSQVVAKCVPDGTMKRFPYNSMQAMA 902
Query: 302 ESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTG 361
SGAKGS VN QI CLLGQ LEG+R +MVSG+TLPSF P+E RAGG++ GRF +G
Sbjct: 903 LSGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPFETDARAGGYIKGRFYSG 962
Query: 362 IQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVL 421
I+PQE++FHCMAGREGLIDTAVKTSRSGYLQRCL K LEG+ V YD +VRD D +LIQ L
Sbjct: 963 IRPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSVRDGDGTLIQFL 1022
Query: 422 YGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKP 481
YG D +D TK+ ++ QF F +N LL K
Sbjct: 1023 YGGDSIDTTKQSHMN--QFKFCAENYDA---------LLAK------------------- 1052
Query: 482 NFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQ--------PLISTFQPDAHFG 533
++P +D E K RK +K+ K P P++S + P + G
Sbjct: 1053 ---YNPGELTHHLD-TETALHYSKKVRKNMKKQGK-LPHYEQQIKYDPVLSVYNPAKYLG 1107
Query: 534 SISENLA---DSVVK-----YTKGRTDASHV-----DKFYDMIFYKNLLSLANPGENVGV 580
S+SE D VK + K + +A KF ++ K + SL NPGE VG+
Sbjct: 1108 SVSEKFQEKLDDFVKDNEDIFAKSKEEAKSTGKLTEKKFRALMQLKYMRSLINPGEAVGI 1167
Query: 581 LAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMP 640
+A+QSIGEPSTQMTLNTFHFAG G NVTLGIPR+REI+M A+ AIKTP M +P L D+
Sbjct: 1168 IASQSIGEPSTQMTLNTFHFAGHGAANVTLGIPRMREIIMTASAAIKTPQMTLPILDDVS 1227
Query: 641 KLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEP--HMNYQMKFCFIPAHMYRDKTS 698
+ +A+ KS+ R+ M++ ++KV + E S + +Y + F Y +
Sbjct: 1228 --DDQADAFCKSVARVVMSEFIDKVLVTETTSTSEDGTNSRSYIINLKFYTRKEYEEAYD 1285
Query: 699 VKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAA 758
+ + D FL LE I K E + + D + + G +
Sbjct: 1286 ISQDHLEDVITSTFLHALEAQIVK-----------EVKKQKRPDSLPN--------IGKS 1326
Query: 759 LGRVDVSS-----DEERDEEDAVQSHKKVNQEEDNDFEEPEDE--ERMSEREEDDNTSNI 811
G+ D+ S E D+EDA + +E ++ P+DE E M + EE + +
Sbjct: 1327 AGKTDLESISAKVTEINDDEDASDEKSRNKGKEAVSYDGPDDEEIETMKKAEETSDEEMV 1386
Query: 812 GERFKI------------------------EFRDSTNVFVKDVVNQHNIVHKYSYDKKNH 847
+ E + +V++ HN+V K+ +D +N
Sbjct: 1387 DDDDDDDDSSSSSEDESSDEEMEEEKNTTKELSRTAKDRQAEVISSHNMVTKFDFDDENG 1446
Query: 848 MWC------------KLLFLPSNLFE----------------------EKESKHLLKTDG 873
WC KLL + N+ E + K +L T+G
Sbjct: 1447 EWCEFKLELNGNETQKLLMV--NIVEDLCRKVVVREIPQIGRCVHPQPDASGKRILTTEG 1504
Query: 874 INVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLS 933
+N + +D+N + ND+ + TYG+EAA I+ E+ VF YGI V RHL
Sbjct: 1505 VNFRAMWDQDDFIDVNNITSNDVAAVLRTYGVEAARNTIVNEIYRVFDTYGISVSSRHLD 1564
Query: 934 LVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVML 993
L+ D MT GTY+A NR GI + S KM++E + + +A + G + L +PSAR++L
Sbjct: 1565 LLGDMMTREGTYLAFNRQGIDSSTSAFMKMSYETTCQFLTKAVLDGDREDLESPSARIVL 1624
Query: 994 GQECRQGTGLFQL 1006
G+ GTG F +
Sbjct: 1625 GKLSNVGTGSFDV 1637
>gi|405966808|gb|EKC32045.1| DNA-directed RNA polymerase I subunit RPA1 [Crassostrea gigas]
Length = 1685
Score = 604 bits (1558), Expect = e-170, Method: Compositional matrix adjust.
Identities = 341/762 (44%), Positives = 468/762 (61%), Gaps = 49/762 (6%)
Query: 1 MDGWTQNASHFL-----KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTF 55
DG NA HF +AEA + QYLVPKDG+PL+GLIQDH++SG L++R F
Sbjct: 605 FDGDEMNA-HFPQTQLGRAEAYTIACTDYQYLVPKDGTPLAGLIQDHMVSGVSLTIRGRF 663
Query: 56 LTRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGE 115
TR +Y LVY AL I LPP + KP LW+GKQVLST++ N+ PK G+
Sbjct: 664 FTRNDYCQLVYMALVDKRGPINLLPPALIKPKTLWSGKQVLSTLLHNIIPKG------GQ 717
Query: 116 LLS----GILDKKQFGSTQYGL--VHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHA 169
+L+ + +K + Q L + + ++HV IR ELL G+LDK +G+T YGLVH
Sbjct: 718 MLNLTGKSKIPEKSWIHQQVRLASLDNMGESHVVIRGSELLCGVLDKGHYGNTPYGLVHC 777
Query: 170 VWDTHGAEHAISLLSCLAKLFTVYLQR-VGFTLGVRDILVRQERDRKRTKIINKARRLGT 228
++ +G E A +LLSCL +LF +LQ+ F+LGV DILV + D++R K ++K+ + G
Sbjct: 778 CYELYGGEVAGTLLSCLGRLFMNFLQQHRSFSLGVEDILVTPKADQRRKKAMHKSGKCGD 837
Query: 229 EAACNALGLPLDTDPEIISSQLQEAYASIPQFRA-QIDRQYKSLLDKVTNNINQVCLPEG 287
E ALGL T+ + + + +A R ++D K D N I C+P+G
Sbjct: 838 EVVTQALGLEEGTEGQELREAMMDAQFDRNDRRLRELDLCMKGKTDDTQNAIVGACMPKG 897
Query: 288 LIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVS 347
L + FPANNLQ MV+SGAKGS+VN MQIS LLGQIELEG+RP +M+SG+TLPSFL Y+ S
Sbjct: 898 LEKLFPANNLQLMVQSGAKGSSVNCMQISGLLGQIELEGRRPPLMLSGKTLPSFLAYDSS 957
Query: 348 PRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYD 407
PRAGGFV GRF+TGI+PQE+FFHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEG+ V+YD
Sbjct: 958 PRAGGFVAGRFLTGIRPQEYFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGIIVNYD 1017
Query: 408 MTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDN--------------IKWICSY 453
MTVRDSD S++Q YGEDGLDV+K +L+ KQF FL DN K +
Sbjct: 1018 MTVRDSDGSIVQFYYGEDGLDVSKTGFLSPKQFPFLTDNSETGSKGNAFDKKVAKRMKKI 1077
Query: 454 KVILNLLKKHPLSLALLLLLTFKSSGKPNF----IFSPHRTKFTMDLLEQWYQLDDKARK 509
K K+ + L + + + + + + R+K + + W +L++ ++
Sbjct: 1078 KKWNKSNKRRSKRCSAFLEFSKEFAEEHDLDNRTLEKTGRSKGATETIRSWQELEEAQKE 1137
Query: 510 KYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTD---ASHVDK-FYDMIFY 565
+Y K P P+ F+P + G + E+ + ++K + S +K F ++
Sbjct: 1138 RYIKNDINAPDPVTGVFRPFQYKGVLPESFLQKIQDFSKNELNKLPTSISEKGFLKLLCD 1197
Query: 566 KNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKA 625
K S PGE VG+L AQSIGEPSTQMTLNTFHFAGRG+MNVTLGIPRL EILM+A+
Sbjct: 1198 KAESSYCQPGEAVGLLCAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLVEILMVASDK 1257
Query: 626 IKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEIS----PEPHMNY 681
IKTPSME+P L + KA +L ++ +++VLEKV + E+L +S + N+
Sbjct: 1258 IKTPSMEVPIL---AHCQDKAKKLQMKFNKVILSEVLEKVTVNEFLSVSNVSKSQRSRNF 1314
Query: 682 QMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKR 723
+++F F+ Y D+ V PS I+ E+ ++K L I K+
Sbjct: 1315 KLRFHFLKPKFYTDRLDVTPSSILHFMEKTYIKNLLTKIKKK 1356
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 131/220 (59%), Gaps = 33/220 (15%)
Query: 820 RDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFL---------PSNLFEE--KES--- 865
R+++ ++ VV + + Y YD K +WC+ ++L EE KE+
Sbjct: 1461 RETSEHRIQFVVLSSSNIADYKYDIKRELWCEFTLQFGLLNSKIDLTSLIEEHAKETVVH 1520
Query: 866 ------KHLLK-------------TDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIE 906
+ LLK T+GIN+ I Y +LDLN+LY NDIH +A+ YGIE
Sbjct: 1521 CVPGINRCLLKEVKSQQGPELHICTEGINILEIFLYADILDLNRLYSNDIHAIANMYGIE 1580
Query: 907 AANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFE 966
AAN+VII+E+KNVFA YGIEVD RHLSL+ADYMT GTY A NR I S +Q+M+FE
Sbjct: 1581 AANKVIIKEIKNVFAAYGIEVDYRHLSLLADYMTFEGTYKAFNRRAIETCASCLQQMSFE 1640
Query: 967 MPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+ + +AS+QG D+L++PS++++ G+ G+G F+L
Sbjct: 1641 TTMSFLVKASLQGAYDNLKSPSSQIVAGKPISCGSGAFEL 1680
>gi|294655924|ref|XP_002770194.1| DEHA2C10670p [Debaryomyces hansenii CBS767]
gi|199430718|emb|CAR65558.1| DEHA2C10670p [Debaryomyces hansenii CBS767]
Length = 1644
Score = 602 bits (1552), Expect = e-169, Method: Compositional matrix adjust.
Identities = 381/1088 (35%), Positives = 563/1088 (51%), Gaps = 151/1088 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCI- 71
KAEA L N SQYL P GSPL GLIQDH+ +G L+ +D F TR Y L+Y CI
Sbjct: 619 KAEALNLANTDSQYLTPTSGSPLRGLIQDHISAGVWLTSKDAFFTRETYQQLIYG--CIR 676
Query: 72 ------LNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQ 125
N+ I T+PPTI+KP PLWTGKQV++T+++N+ P + + + K +
Sbjct: 677 PEDGHTTNSRIITVPPTIFKPQPLWTGKQVITTILLNIKPDNVPGV-------NLRSKNK 729
Query: 126 FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSC 185
+ +G + V ++GELL GILDK Q+G++Q+G+VH++ + +G A LS
Sbjct: 730 IKNEYWG--EGSTENEVIFKNGELLCGILDKSQYGASQFGIVHSLHEVYGPTVAGKALSV 787
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDT---D 242
L +LFT Y+ FT G+ D+ + + ++ R I+ ++ +G A L DT D
Sbjct: 788 LGRLFTNYIMMTAFTCGMDDLRLTSDGNKWRRDILKQSVDIGRATAAEVTNLEKDTANND 847
Query: 243 PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
E++ +L+E + +D +S ++ +T+ + C+P G ++ FP N++Q M
Sbjct: 848 KELLR-RLEEILRDDNKL-GILDAVTQSKVNTITSQVVSKCVPGGTMKRFPYNSMQAMAL 905
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
SGAKGS VN QI CLLGQ LEG+R +MVSG+TLPSF P+E RAGG++ GRF +GI
Sbjct: 906 SGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPFETDARAGGYIKGRFYSGI 965
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
+PQE++FHCMAGREGLIDTAVKTSRSGYLQRCL K LEG+ V YD +VRD D +LIQ LY
Sbjct: 966 RPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSVRDGDGTLIQFLY 1025
Query: 423 GEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPN 482
G D +D TK+ ++ +F F +N + L K +P
Sbjct: 1026 GGDAIDTTKQSHMN--EFKFCMENYDAL--------LAKYNPGE---------------- 1059
Query: 483 FIFSPHRTKFTMDLLEQWYQLDDKARK--KYRKKFKACPQ-----PLISTFQPDAHFGSI 535
FS H +D E K RK K +KKF Q P++S + P + G++
Sbjct: 1060 --FSNH-----LD-TESALSYAKKVRKNMKKQKKFPHYEQTNKYDPVLSVYNPSKYLGAV 1111
Query: 536 SENLAD----------SVVKYTKGRTDASHVD--KFYDMIFYKNLLSLANPGENVGVLAA 583
SE D S+ ++D+ + KF ++ K + S+ NPGE+VG++A+
Sbjct: 1112 SETFQDKLDDFVSENPSLFSSKDKKSDSPSLSEKKFRALMQLKYMRSVINPGESVGIIAS 1171
Query: 584 QSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLE 643
QSIGEPSTQMTLNTFHFAG G NVTLGIPR+REI+M A+ AIKTP M +P L D+ +
Sbjct: 1172 QSIGEPSTQMTLNTFHFAGHGAANVTLGIPRMREIIMTASAAIKTPQMTLPILDDV--TD 1229
Query: 644 KKANRLAKSMTRITMADVLEKVKIKE--WLEISPEPHMNYQMKFCFIPAHMYRDKTSVKP 701
+A+ KS ++ +++ ++K+ + E S + +Y + F Y + +
Sbjct: 1230 SQADSFCKSAAKVVLSEFIDKILVTESTGSSGSGDSSRSYTINMRFYSRKEYEQEYDITQ 1289
Query: 702 SKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGR 761
+ KFL LE + K + + Q + D G + L
Sbjct: 1290 QHLETVVTDKFLDALEAQVVK------------EVKKQRKPDALPTVGAAVPKSQTDLAI 1337
Query: 762 VDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDE--ERMSEREEDDNT----------- 808
+S +E+ + K N ++ +EEP+D+ E M + EE +
Sbjct: 1338 SSGTSIPTENEDGSASDEKHSNSKQAVSYEEPDDDEIETMKKAEETSDEDMEDSSSSDDS 1397
Query: 809 -----------SNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC------- 850
+ R S +V++ HN++ K+++D N WC
Sbjct: 1398 SDEESDEEMKPEEVTRREPKTLSRSAKDRQSEVISSHNLISKFNFDDDNGEWCEFKLDLS 1457
Query: 851 ----KLLFLPSNLFEE-------KE---------------SKHLLKTDGINVNFISQYRH 884
KLL + N+ EE +E K +L T+G+N +
Sbjct: 1458 GDSQKLLMV--NIVEEICRKVVVREISRIGRCLHPQPEVGGKRILTTEGVNFQAMWDQDD 1515
Query: 885 LLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGT 944
+++N + NDI + TYG+EAA I+ EV+NVF Y I V RHL L+ D MT GT
Sbjct: 1516 FINVNSISSNDIAAVLRTYGVEAARNTIVNEVQNVFDRYAIAVSSRHLDLIGDMMTREGT 1575
Query: 945 YVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
Y+A NR GI + S KM++E + + +A + G + L +PSAR+++G+ GTG F
Sbjct: 1576 YLAFNRQGIDSSTSAFMKMSYETTCQFLTKAVLDGEREDLESPSARIVMGKLSNVGTGSF 1635
Query: 1005 QLRNREKK 1012
+ R K
Sbjct: 1636 DVLARMPK 1643
>gi|302307745|ref|NP_984470.2| ADR374Cp [Ashbya gossypii ATCC 10895]
gi|299789146|gb|AAS52294.2| ADR374Cp [Ashbya gossypii ATCC 10895]
gi|374107684|gb|AEY96592.1| FADR374Cp [Ashbya gossypii FDAG1]
Length = 1640
Score = 602 bits (1552), Expect = e-169, Method: Compositional matrix adjust.
Identities = 383/1070 (35%), Positives = 580/1070 (54%), Gaps = 137/1070 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
++EA L N SQYL P GSP+ GLIQDH+ +G L+ +D+F TR +Y +Y CI
Sbjct: 624 RSEAFTLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTNKDSFFTREQYQQYIYG--CIR 681
Query: 73 -------NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQ 125
++I T+PP + KP+PLWTGKQ+++TV++N TP D I ++ K +
Sbjct: 682 PEDGHASRSKIITVPPAVVKPVPLWTGKQIITTVLLNATPADIPGI-------NLVSKNK 734
Query: 126 FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSC 185
+ +G + ++ V ++G LL GILDK Q+G+++YG+VH++ + +G + + +LS
Sbjct: 735 IKNEYWG--KSSYENEVIFKNGALLCGILDKSQYGASKYGIVHSLHELYGPDVSSKVLSI 792
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEI 245
L +LFT Y+ FT G+ D+ + E ++ R I+ K+ +G AA L D P+
Sbjct: 793 LGRLFTNYITSTAFTCGMDDLRLTDEGNKWRIDILKKSTDIGRAAAAEVTNLGGDVRPDD 852
Query: 246 --ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVES 303
+ +L+E + +D S ++ +T+ + C+P+G ++ FP N++Q M S
Sbjct: 853 AELLKRLEEILRDDNKL-GILDAVTSSKVNTITSEVVSKCVPDGTMKKFPYNSMQAMALS 911
Query: 304 GAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQ 363
GAKGS VN QI CLLGQ LEG+R +MVSG+TLPSF P+E +AGG++ GRF +GI+
Sbjct: 912 GAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPFETDAKAGGYIKGRFYSGIK 971
Query: 364 PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYG 423
PQE++FHCMAGREGLIDTAVKTSRSGYLQRCL K LEG+ V YD TVRD D +L+Q LYG
Sbjct: 972 PQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNTVRDGDGTLVQFLYG 1031
Query: 424 EDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNF 483
D +DVTK +++ +F F DN LLK++ S AL+ L +S+ K
Sbjct: 1032 GDAIDVTKESHMS--EFKFCVDNYDA---------LLKRYNPS-ALIQHLDVESALK--- 1076
Query: 484 IFSPHRTKFTMDLLEQWYQLDDKAR-KKYRKKFKACPQPLISTFQPDAHFGSISENLADS 542
+K M ++ L AR KY P++S + P GS+SEN D
Sbjct: 1077 -----YSKKAMKNRKKNLNLPHYARHDKY--------DPVLSKYNPSKFLGSVSENFQDK 1123
Query: 543 VVKYT-------KGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTL 595
+ + KG+ + KF ++ K + SL NPGE VG++A+QS+GEPSTQMTL
Sbjct: 1124 LESFIDSNASLFKGQATVNE-KKFRALMQLKYMRSLINPGEAVGIIASQSVGEPSTQMTL 1182
Query: 596 NTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTR 655
NTFHFAG G NVTLGIPR+REI+M A+ AIKTP M +P LPD+ ++ A+ K+ T+
Sbjct: 1183 NTFHFAGHGAANVTLGIPRMREIIMTASAAIKTPQMTLPILPDV--TDETADIFCKNTTK 1240
Query: 656 ITMADVLEKVKIKEWLEISP--EPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFL 713
+ +++V++KV + E + Y + F Y ++ + ++ KFL
Sbjct: 1241 VILSEVIDKVVVVETTGAATGGANARTYVVTMNFFNEEEYGEQYDITKEELQTVVSTKFL 1300
Query: 714 KELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEE 773
LE AI LK + ++ ME V E A G + S+DE+ DEE
Sbjct: 1301 VALESAI-------LKEIKKQKRTHTMEVGVAVPSSETAFG----INEKAHSNDEDHDEE 1349
Query: 774 DAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDN-------------------------T 808
++ + +K+ ED D EE E R +E+ D+ T
Sbjct: 1350 ESRKKNKQAVSYEDPDDEELE-SMRQAEQTSDEEISSDKESNSDSDSDSDAEMEDIHAVT 1408
Query: 809 SNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC-----------KLLFLPS 857
+ + E +D + +++ H + KY++D ++ WC KLL +
Sbjct: 1409 AGANKNMSKEQKDRQSA----IISSHRFISKYNFDDESGRWCEFKLDLAADTEKLLMV-- 1462
Query: 858 NLFEE---------------------KESKHLLKTDGINVNFISQYRHLLDLNKLYVNDI 896
N+ E+ + K +L T+G+N + +D+N + ND+
Sbjct: 1463 NIVEDICRKSVIREVPNIDRCVHPEPENGKRVLVTEGVNFQAMWDQEAFIDVNGITSNDV 1522
Query: 897 HYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLN 956
+ TYG+EAA I+ E+ NVF+ Y I V RHL L+AD MT GTY+A NR G+ +
Sbjct: 1523 SAVLKTYGVEAARNTIVNEINNVFSRYAISVSYRHLDLIADMMTRQGTYLAFNRQGMESS 1582
Query: 957 PSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
S + KM++E + + +A + + L++PSA+++LG+ GTG F +
Sbjct: 1583 TSSLMKMSYETTCQFLTKAVLDNEREELKSPSAKLVLGKLNSVGTGAFDI 1632
>gi|448509658|ref|XP_003866188.1| Rpa190 RNA polymerase I subunit A190 [Candida orthopsilosis Co
90-125]
gi|380350526|emb|CCG20748.1| Rpa190 RNA polymerase I subunit A190 [Candida orthopsilosis Co
90-125]
Length = 1651
Score = 602 bits (1551), Expect = e-169, Method: Compositional matrix adjust.
Identities = 384/1082 (35%), Positives = 573/1082 (52%), Gaps = 140/1082 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCI- 71
KAEA L N SQYL P GSPL GLIQDH+ +G L+ +DTF TR Y L+Y CI
Sbjct: 615 KAEALNLANTDSQYLTPTSGSPLRGLIQDHISAGVWLTSKDTFFTRETYQQLIYG--CIR 672
Query: 72 ------LNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQ 125
+ + TLPP I+KP LWTGKQV++T+++N+ P + + ++ K +
Sbjct: 673 PEDGHTTRSRLITLPPAIYKPELLWTGKQVITTILLNIKPDNVPGVN-------LISKNK 725
Query: 126 FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSC 185
+ +G H+ + V ++GELLSGILDK Q+G++Q+G+VH++ + +G E A LS
Sbjct: 726 IKNDYWG-EHST-ENEVIFKNGELLSGILDKSQYGASQFGIVHSLHEVYGPEVAGKALSV 783
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDT--DP 243
L +LFT Y+ FT G+ D+ + ++ + R I+ ++ +G +AA L DT +
Sbjct: 784 LGRLFTNYIMMTAFTCGMDDLRLTEDGNAWRKNILKQSVDVGRQAATEVTNLSEDTANNN 843
Query: 244 EIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVES 303
+ + +L+E + +D +S ++ +T+ + C+PEG ++ FP N++Q M S
Sbjct: 844 KELRRRLEEILRDDDKL-GILDAITQSKVNAITSQVVSKCVPEGTMKKFPYNSMQAMALS 902
Query: 304 GAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQ 363
GAKGS VN QI CLLGQ LEG+R +MVSG+TLPSF +E RAGG++ RF +GI+
Sbjct: 903 GAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKAFETDARAGGYIKQRFYSGIR 962
Query: 364 PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYG 423
PQE++FHCMAGREGLIDTAVKTSRSGYLQRCL K LEG+ V+YD +VRD D +LIQ LYG
Sbjct: 963 PQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVNYDNSVRDGDGTLIQFLYG 1022
Query: 424 EDGLDVTKRQYLTDKQFSF-LEDNIKWICSY---KVILNLLKKHPLSLALLLLLTFKSSG 479
D +D TK+ ++ QF F LE+ + Y +++ NL LS + + + K
Sbjct: 1023 GDSIDTTKQSHMN--QFEFCLENYDALLAKYNPGEMVENLDTSKALSYSKKVRKSMKKQK 1080
Query: 480 KPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENL 539
PH EQ + D P+I+T+ P + GS+SE
Sbjct: 1081 D-----VPH--------YEQEIKYD----------------PVINTYNPAKYLGSVSEKF 1111
Query: 540 ADSVVKYTKGRTD--------ASHV-----DKFYDMIFYKNLLSLANPGENVGVLAAQSI 586
+ + K+ D A KF ++ K + SL NPGE+VG++A+QSI
Sbjct: 1112 QEKMDKFVSSNPDFFAQSKEEAKSTGKLTEKKFRALMQLKYMRSLVNPGESVGIIASQSI 1171
Query: 587 GEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKA 646
GEPSTQMTLNTFHFAG G NVTLGIPR+REI+M A+ AIKTP M +P LPD+ +++A
Sbjct: 1172 GEPSTQMTLNTFHFAGHGAANVTLGIPRMREIIMTASAAIKTPQMTLPILPDVS--DQQA 1229
Query: 647 NRLAKSMTRITMADVLEKVKIKEWLEISPEP--HMNYQMKFCFIPAHMYRDKTSVKPSKI 704
+ KS+ ++ M++ ++ V + E + +Y + F Y + + ++
Sbjct: 1230 DAFCKSIAKVVMSEFVDNVTVTETTSQDEDGSNSRSYVIHLGFYTKDEYEAEYDISQEQL 1289
Query: 705 IDHFERKFLKELEVAIAKRAAQGLK-NMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRVD 763
+ + F+ +LE I K + K + + + D+E G+ E L +
Sbjct: 1290 ENVVTQTFIHDLETQIVKEVKKQKKPDYMPTVGKSAGKTDMETVSGKIKE-----LSDDE 1344
Query: 764 VSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDD----------------- 806
DEE D D +S +KV Q+ D + ++ E M EE
Sbjct: 1345 EDVDEEEDGADLEESKQKVKQQVSYDGPDDDEIETMKRAEETSDEEMEDAEEESGDESSS 1404
Query: 807 ----NTSNIGERFKIEFRDSTNVFVKD----VVNQHNIVHKYSYDKKNHMWC-------- 850
+ + +E + + KD V+ QHN+V K+++D N WC
Sbjct: 1405 SDSDSDEDADGDANMEKKPELSRLAKDRQAEVIAQHNMVTKFNFDDDNGEWCEFKLELNG 1464
Query: 851 ----KLLFLPSNLFEE----------------------KESKHLLKTDGINVNFISQYRH 884
KLL + N+ EE K +L T+G+N + +
Sbjct: 1465 NETQKLLMV--NIVEELLRKTVVRQIPHIGRCLRPDPDTSGKRILTTEGVNFKAMWEQDD 1522
Query: 885 LLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGT 944
+D+N + NDI + TYG+EAA I+ E+ VF YGI V RHL L+AD MT GT
Sbjct: 1523 FIDVNAITSNDIASVLRTYGVEAARNTIVNEIYRVFDTYGISVSSRHLDLIADMMTREGT 1582
Query: 945 YVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
Y+A NR GI + S KM++E + + +A + G + L +PSA++++G+ GTG F
Sbjct: 1583 YLAFNRQGIDSSTSSFMKMSYETTCQFLTKAVLDGDREELESPSAKIVMGKLANVGTGSF 1642
Query: 1005 QL 1006
+
Sbjct: 1643 DI 1644
>gi|341881185|gb|EGT37120.1| hypothetical protein CAEBREN_30567 [Caenorhabditis brenneri]
Length = 1591
Score = 598 bits (1543), Expect = e-168, Method: Compositional matrix adjust.
Identities = 380/1021 (37%), Positives = 543/1021 (53%), Gaps = 127/1021 (12%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
SH + E + NV S +LVPKD +PL GLIQDHV+SG L+LRD FL + ++M+LV +
Sbjct: 567 SHIAQTEVREIANVGSNFLVPKDATPLLGLIQDHVVSGVLLTLRDRFLNKEDFMHLVLAS 626
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGS 128
+ I PPTI P LWTGKQV+ST++ N P+ K +I LD K
Sbjct: 627 FAQYSKRIEIPPPTILYPKRLWTGKQVVSTIVKNCIPEGKPLIN--------LDGKAKTP 678
Query: 129 TQYGLVHA-------VWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAIS 181
+V + ++HV R GELL G+LDK FG+TQ+GL H ++ +G +
Sbjct: 679 LSCWIVPGFKAPDFDMSESHVVFRQGELLVGVLDKAHFGATQFGLAHCAFELYGHRCGVQ 738
Query: 182 LLSCLAKLFTVYLQRV-----------GFTLGVRDILVRQERDRKRTKIINKARRLGTEA 230
LLSC ++LFT YLQ GFTLGV DILV QE D KR + ++R +G +
Sbjct: 739 LLSCFSRLFTTYLQVGFEEISYTFFFHGFTLGVADILVLQEADAKRKDAVMESRTIGDQV 798
Query: 231 ACNALGLPLDTDPEIISSQLQEAYASIPQFRA----QIDRQYKSLLDKVTNNINQVCLPE 286
A GL + P I L Y + P+ + +D K + K + I + C+P
Sbjct: 799 VKTAFGLSENATPAEIKRTLAATYCN-PRGQGTDVKMLDFGMKQGIAKYNDAITKSCVPT 857
Query: 287 GLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEV 346
GL+ FP N LQ M++SGAKGS VN +QIS LGQIELEGKR A+ V+GRTLPSF ++
Sbjct: 858 GLLRKFPENALQLMIQSGAKGSAVNAIQISGCLGQIELEGKRMAVTVAGRTLPSFRCFDP 917
Query: 347 SPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHY 406
SPRAGG++D RF+TG+ PQE FFH MAGREGLIDTAVKTSRSGYLQRC++KHLEG+ VHY
Sbjct: 918 SPRAGGYIDQRFLTGMNPQELFFHTMAGREGLIDTAVKTSRSGYLQRCIIKHLEGIRVHY 977
Query: 407 DMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIK---------WICSYKVIL 457
D TVRD D S+IQ YGEDG+D TK +L K FLEDN++ + +
Sbjct: 978 DSTVRDHDGSVIQFRYGEDGMDTTKATFLNKKTMPFLEDNLEAVTLATKPEGVADADFGV 1037
Query: 458 NLLKKHPLSLALLLLLTFKSSGKPNFIFSPHRTKFTMD--------LLEQWYQLDDKARK 509
+K + K P + T F+ + +L W++L + R
Sbjct: 1038 EDTEKRYRKIVKWKKKAAKKGTTPKKTYFSAFTNFSAEHAGKDKKRILAMWFELSLEERA 1097
Query: 510 KYRKKF-KACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNL 568
+Y K CP+ + + P + G++ E + + + + K D D +F+K +
Sbjct: 1098 EYASGIPKKCPEAVDERYNPTSKLGALPEKMLEEIEGFCKKDHDEPK-DVLQRTLFWKGM 1156
Query: 569 LSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKT 628
SLA PGENVG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVTLGIPRLREILM A+K+I T
Sbjct: 1157 RSLAEPGENVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMTASKSIAT 1216
Query: 629 PSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEIS-PEPHMNYQMKFCF 687
PS I + P+ ++ + + + + R+ + +L+ ++E + ++ + Y ++
Sbjct: 1217 PSASIAVIEGTPR--ERIDSIKRELDRVYLKQLLKNFSLEEKITLTQTQSCRRYHLRINI 1274
Query: 688 IPAHMYRDKTS-VKPSKIIDHFERKFLKELEVAIAKR--------------AAQGLKNMN 732
+ + +K SKI++ E++F+ + AI K+ QG
Sbjct: 1275 LSSEKREQGARHLKRSKIMEEIEKRFILRVSQAIKKKYYEISDYQQMSHRTMRQGNLAAG 1334
Query: 733 IE----QSRD-QMED--DVEDDEGEGAEGAGAALGRV-DVSSDEERDEEDAVQSHKKVNQ 784
IE +SR Q D D D+E EG A AA R+ DE D E + +V +
Sbjct: 1335 IEIGGNKSRGFQGPDNGDSSDEEAEGGREADAAEARLHQRHRDEGADYEGEEEERVEVRE 1394
Query: 785 EEDNDF--EEPEDEERMSEREEDDNTSNI--GERFKIEFRDSTNVFVKDVVNQHNIVHKY 840
E+D++ + +D ++ E EE++ T + R + R S N + Y
Sbjct: 1395 EKDDEAMDSDTDDLKKPDENEEENETGQMVNSSRVQAVQRLSEN------------IASY 1442
Query: 841 SYDKKNHMWCKLLF-LP----------------------------SNLFEEKESKH---- 867
SYD K++ WC+++F LP E E K+
Sbjct: 1443 SYDVKSNKWCEVVFELPLRNKTKMDVSSIVEKEVDQFIVHQTQGIERCVETTEQKNGKET 1502
Query: 868 -LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIE 926
+L+T G+N+ ++ +LD+N +Y ND++ + YG+EA ++ I V F GIE
Sbjct: 1503 IILQTQGVNLAAFFKHADVLDVNSVYSNDLNLILENYGVEACSKAIT-TVSFRFQFSGIE 1561
Query: 927 V 927
+
Sbjct: 1562 L 1562
>gi|345562788|gb|EGX45801.1| hypothetical protein AOL_s00117g6 [Arthrobotrys oligospora ATCC
24927]
Length = 1634
Score = 597 bits (1538), Expect = e-167, Method: Compositional matrix adjust.
Identities = 382/1070 (35%), Positives = 561/1070 (52%), Gaps = 133/1070 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL--- 69
+AEA ++ N SQYLVP G PL GLIQDH++ ++ RD+ TR EY L++ +L
Sbjct: 613 RAEAQYIANTDSQYLVPTSGKPLRGLIQDHIVMSLHMTQRDSLFTRGEYQELLHASLRPE 672
Query: 70 --CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
I+ LPPT+ KP+ LWTGKQ+++T++ N+ P I S K G
Sbjct: 673 DKMGAAERIQLLPPTVLKPVKLWTGKQIVTTILENIRPPGTTAI------SFTSKTKVPG 726
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
S+ + V + G G+LDK Q G++ YG+VH+V + +G A S LS L
Sbjct: 727 SS---WAEKSEEGEVVVSKGYFACGVLDKSQVGASAYGIVHSVHELYGPTIAGSFLSILG 783
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLD-TDPE-- 244
+LFT L F+ G+ D++ + D R K + A GTE A + L D DP
Sbjct: 784 RLFTKLLHMRAFSCGMEDLVFAPQGDHVRRKTLELAASAGTEVARGFVELAKDFVDPSSI 843
Query: 245 IISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESG 304
I+SS+L+E + + + +D S ++T+ + ++CLP L++PFP N +Q M SG
Sbjct: 844 ILSSKLEEVLRNDTK-QQTLDSLMGSKGHEITSKVIKLCLPNSLVKPFPKNQMQAMTVSG 902
Query: 305 AKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQP 364
AKGS VN QISCLLGQ LEG+R +M+SG+TLPSF P++ RAGG+V GRF+TGI+P
Sbjct: 903 AKGSDVNASQISCLLGQQVLEGRRVPVMISGKTLPSFAPFDPGLRAGGYVTGRFLTGIRP 962
Query: 365 QEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGE 424
QE++FH MAGREGLIDTAVKTSRSGYLQRCL+K +EG+ HYD +VRDSD SL+Q LYGE
Sbjct: 963 QEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGIRTHYDSSVRDSDGSLVQFLYGE 1022
Query: 425 DGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFI 484
DG+D+ K +L+D F+F N + NL + L F ++
Sbjct: 1023 DGIDIGKHAHLSD--FTFHAKNHETYIEQLGCANLTDR----------LDFNTA------ 1064
Query: 485 FSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKA--CPQPLISTFQPDAHFGSISENLADS 542
MD ++ KK+RK + P IS F P + GS+SE +
Sbjct: 1065 ---------MDYSKE-------VAKKFRKAGSSPITMDPAISVFPPGRYVGSVSEQFSGD 1108
Query: 543 VVKYTKGRTDASHVDK-----FYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNT 597
+ K+ K D DK F ++++ K L SL +PGE VG+LA QSIGEPSTQMTLNT
Sbjct: 1109 LEKFVKENPDECLSDKREKKMFKNLMYLKYLRSLISPGEAVGILAGQSIGEPSTQMTLNT 1168
Query: 598 FHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPF----LPDMPKLEKKANRLAKSM 653
FH AG NVTLGIPRLREI+M A+ I TP M + PD +A AKS+
Sbjct: 1169 FHLAGHAAKNVTLGIPRLREIVMTASATIATPKMTLTLNDHVSPD------QAAIFAKSI 1222
Query: 654 TRITMADVLEKVKIKEWLEISPEPHM---NYQMKFCFIPAHMYRDKTSVKPSKIIDHFER 710
+R+++++V++ V + E H Y++K F P+ Y ++ S +I +
Sbjct: 1223 SRLSLSEVVKNVTVTETTG-EGRGHAQAKTYKVKLEFFPSEEYEEEYSTTTPEIFQSIQE 1281
Query: 711 KFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDE-GEGAEGAGAALGRVDVSSDEE 769
F+ +L + K + N + + + D + G+ A + V SD+E
Sbjct: 1282 MFIPKLCKEVGKEFKKMASNTDSVPTVGAASKSISDGQTGQAGMDAHDDDDQNVVDSDDE 1341
Query: 770 RDEEDAVQSHKKVNQEEDNDFEEPEDEER------------------------MSEREED 805
E+DA QS +K + ++EP+D+E+ +E +E
Sbjct: 1342 DGEQDAKQSSRKADATA---YDEPDDDEKGILDGIEAEEEEDDDDSSSDEESDDAENDES 1398
Query: 806 DNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKL---------LFLP 856
D G + + +D + F + + H+ + +S+D+ WC++ L
Sbjct: 1399 DGRDGKGGQRDLSRKDVDSAF-DTLRSNHSELSAFSFDRAGGSWCQIELEYAAESPKILM 1457
Query: 857 SNLFE----------------------EKESKHLLKTDGINVNFISQYRHLLDLNKLYVN 894
NL E + + K L DG+N + I Y H++D + ++ N
Sbjct: 1458 INLVEKVCRESVIHHLAGIKTCEVVVDDMQKKKQLSVDGVNFHAIWDYAHVIDTSAIHSN 1517
Query: 895 DIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIR 954
DI + YG+E A II+E+ +VF +GI VD RHL+L+AD MT +G + NR G+
Sbjct: 1518 DIAAVLRVYGVECARNTIIQEMGSVFKGHGIAVDTRHLNLIADIMTRNGGFSPFNRTGLA 1577
Query: 955 LNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
S + KM+FE +++AS+ D LR+PSAR++ G+ GTG F
Sbjct: 1578 AAVSPLMKMSFETTCNFLKEASLAYDCDDLRSPSARIVFGRLQNIGTGSF 1627
>gi|395324163|gb|EJF56609.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Dichomitus squalens LYAD-421 SS1]
Length = 1724
Score = 594 bits (1531), Expect = e-166, Method: Compositional matrix adjust.
Identities = 404/1087 (37%), Positives = 563/1087 (51%), Gaps = 150/1087 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA ++ N +QYLVP G PL GLIQDHV++G ++ +D+F TR EY L+Y AL
Sbjct: 681 RAEAYYIANTDNQYLVPTSGKPLRGLIQDHVVAGVWMTAQDSFFTREEYFQLLYGALRPE 740
Query: 73 NTEIR------TLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQF 126
+ + TLPPTIWKP PLWTGKQ++STV+ N+TP + G+ Q
Sbjct: 741 DEPLEGKRRLVTLPPTIWKPQPLWTGKQIISTVMKNITPS---------VFEGLNLHAQA 791
Query: 127 GSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCL 186
+ + V GELLSG+LDK FG++ +GLVH+V++ +GA+ A LL L
Sbjct: 792 KVPGHLWGKDSKEDQVVFMDGELLSGVLDKSAFGASDFGLVHSVYELYGADTAGRLLGIL 851
Query: 187 AKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPL------D 240
++LFT +LQ FT + D+ + + + KR +++ LGTE A P+ D
Sbjct: 852 SRLFTKFLQHRAFTCRMDDLALTPDGNAKRAELLVTGANLGTEGAME--NFPVLKTTQDD 909
Query: 241 TDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFM 300
+++ S L++ + A +D K L K+T +I +P GL+ FP N++Q M
Sbjct: 910 EKSQVLRSLLEDVLRDDSKM-AGLDVTVKGKLAKLTKSIADAVMPHGLLRQFPHNHMQAM 968
Query: 301 VESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMT 360
SGAKGS VN QISC LGQ ELEG+R MVSG+TLPSF P+E AGG+V RF+T
Sbjct: 969 TVSGAKGSAVNAQQISCALGQQELEGRRVPTMVSGKTLPSFKPFETRAMAGGYVASRFLT 1028
Query: 361 GIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQV 420
G++PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEG+ VHYD TVR SD S+ Q
Sbjct: 1029 GVKPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGIRVHYDNTVRGSDSSVYQF 1088
Query: 421 LYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGK 480
YG D LDVTK+++LT QF F+ N ++ + L KS G
Sbjct: 1089 NYGGDSLDVTKQKHLT--QFEFIARN-------------------EVSFVERLQPKSLGG 1127
Query: 481 PNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLA 540
H ++ +D +++ + DK K+ R P IS + P + GS SE A
Sbjct: 1128 -------HVSEDAVDYMKKIVKYKDKKHKRDRM------LPTISKYPPQRNVGSTSELFA 1174
Query: 541 DSVVKYT-----------------KGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAA 583
D V +Y K R F + K + SL PGE VG+LA+
Sbjct: 1175 DKVEEYIQKNPHGLIKEKEGEARFKRRRAPLSKKNFRLLTSVKYMRSLVEPGEAVGLLAS 1234
Query: 584 QSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLP-----D 638
Q +GEPSTQMTLNTFHFAG G NVTLGIPRLREI+M A++ KTPSM + P D
Sbjct: 1235 QGVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTASQKPKTPSMTMRVRPGTTPSD 1294
Query: 639 MPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMN-YQMKFCFIPAHMYRDKT 697
+ KKA+RLA ++ V+++V + E L + E +++ F P Y +
Sbjct: 1295 ITSFCKKASRLA-------LSHVVDRVSVTEQLILKGESRSKEFRIDLDFYPRSEYEQEY 1347
Query: 698 SVKPSKIIDHFERK----FLKELEVAIAKRAAQGLKNMNIE--QSRDQMEDDVEDDEGEG 751
+V P +I+ F K F KEL+V + K A LK+ E + R E E
Sbjct: 1348 NVTPLEILASFGHKFPQIFRKELQVELKKLDAD-LKSQRAELGKGRAVREHRGAAAAEEE 1406
Query: 752 AEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEE------------------DNDFE-- 791
GR + E + DAV S K ++E D D E
Sbjct: 1407 QGEEPNGRGRDEDDGASEIGDGDAVTSKMKRQRKEQATYEDDDEEADEGGELDDMDIEAA 1466
Query: 792 ---EPEDEERMSEREEDDNTSNIGERFKIE--FRD----STNVFVKDVVNQHNIVHKYSY 842
PED+ S+ +E D S E +IE F D +T+ +D + I ++
Sbjct: 1467 YASSPEDDAVDSDVDE-DAPSMAAEHGRIESSFMDNLPSATSFSFRD--SGCTIGLQFGS 1523
Query: 843 DKKNHMWCKLL------------------FLPSNLFEEKESKHLLKTDGINVNFISQY-- 882
+ L+ F+ + E + L T+G N+ + Q+
Sbjct: 1524 TMPKLLLVGLVERVCLKTVVREIPGITDCFMNEEDGKNGEKIYSLTTNGSNIPGLWQFAR 1583
Query: 883 ---RHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYM 939
++D + +Y NDI+ + YG+EAA I++E+ VFAVY I+VD RHL L+ADYM
Sbjct: 1584 GHGESIIDEDGIYSNDIYALLCAYGVEAARAAILKEIGGVFAVYKIDVDIRHLELIADYM 1643
Query: 940 THSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQ 999
T G Y NR GI NPS + K ++E + A++ G D L PS +++G+
Sbjct: 1644 TFDGGYKPFNRKGISTNPSPLLKASYETTAAFLSDATLHGDFDDLTTPSGNIVMGRLSHT 1703
Query: 1000 GTGLFQL 1006
GTG+F +
Sbjct: 1704 GTGVFDI 1710
>gi|443894484|dbj|GAC71832.1| RNA polymerase I, large subunit [Pseudozyma antarctica T-34]
Length = 1797
Score = 593 bits (1529), Expect = e-166, Method: Compositional matrix adjust.
Identities = 389/1132 (34%), Positives = 570/1132 (50%), Gaps = 189/1132 (16%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S +AE ++ N +QYL P G+PL GLIQDHV++G ++ ++T TRAEY ++Y A
Sbjct: 711 SQAARAECYYVANTDNQYLTPTSGNPLRGLIQDHVVAGVWMTSKNTLYTRAEYQQMLYGA 770
Query: 69 L-----CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDK 123
L + T+PP + KP PLWTGKQ++STV++NL P + + K
Sbjct: 771 LRPEGKYTGGGRVLTVPPALLKPEPLWTGKQIISTVLLNLKPAKADGLN-------LTSK 823
Query: 124 KQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLL 183
+ +G HA + V I GELL G+LDK FG++ YGLVHA+++ +G+E A LL
Sbjct: 824 AKVAGRLWGKDHAS-EEKVIIEDGELLQGVLDKAAFGASAYGLVHAIFEIYGSETAGKLL 882
Query: 184 SCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLP----- 238
S L++LFT +LQ F+ + D+L+ +E D R K +N A+ G A +GL
Sbjct: 883 SVLSRLFTKFLQSNAFSCRMDDLLLSKEGDEVRRKALNAAKGEGKGVAMKTVGLEGEDEN 942
Query: 239 -LDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNL 297
DTD + +L+E + A +D + + + +T+ I + CLP GL FP NN+
Sbjct: 943 NPDTDRNL-RIRLEEVLRDDDKL-AVLDGEMMNSSNALTSKIIESCLPSGLYRKFPENNM 1000
Query: 298 QFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGR 357
Q M SGAKGS VN QISCLLGQ LEG+R +MVSG++LPSF P+E S RAGGFV GR
Sbjct: 1001 QMMTGSGAKGSAVNVSQISCLLGQQALEGRRVPLMVSGKSLPSFRPFETSTRAGGFVSGR 1060
Query: 358 FMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSL 417
F+TGI+PQE+FFHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEG+ + YD TVR++D S+
Sbjct: 1061 FLTGIRPQEYFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGVHIQYDNTVRNADGSI 1120
Query: 418 IQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKH-PLSLALLLLLTFK 476
+Q YGED LD TK +YL QF F N + N K++ P L ++
Sbjct: 1121 LQFAYGEDALDTTKSKYL--GQFDFTAANFE---------NYNKRYDPKQLGEVVEAELA 1169
Query: 477 SSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSIS 536
+ + PH KY +P++S + P HFGS+S
Sbjct: 1170 AEHMKKALKKPH---------------------KY--------EPVLSMYNPSTHFGSMS 1200
Query: 537 ENLADSVVKYTK----------------------GRTDASHVDKFYDMI-FYKNLL---- 569
E A + Y + G D + K + + F K L
Sbjct: 1201 EKYAKEIEAYIEKNPSKLLADKKKKSKKRKSEAAGDADGNDDGKVAEKLRFAKEKLGVEA 1260
Query: 570 -----------SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREI 618
L +PGE VG+LAAQ +GEPSTQMTLNTFHFAG G NVTLGIPRLREI
Sbjct: 1261 FRAMCKVLYHRGLVDPGEAVGLLAAQGVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREI 1320
Query: 619 LMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEP- 677
+M A++ IKTP M +P L + E + K +R+ ++ V+++ + E +ISP+
Sbjct: 1321 VMTASQNIKTPIMRLPVLEGI--TEDQIKTFCKDGSRLVLSQVIDEAIVTE--KISPKSS 1376
Query: 678 ------HMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAI-----AKRAAQ 726
Y ++ F PA +++ + I+ + F LE I +R
Sbjct: 1377 QTGFHRQKTYTVRLNFYPADECKEEYNCSTQHILHGLQETFAPNLENNINNEMRKQRREH 1436
Query: 727 GLKNMNIEQSR----DQMEDDVEDDEGEGAEGAGAALGRVDVSSDEER-------DEEDA 775
++ I + R + + DD+GE A R + + ++ + DA
Sbjct: 1437 AVQAAAIGRGRTFSDNAAAGNNADDDGEERANAAQPRSRGNDADSDDEEDASSEVGDGDA 1496
Query: 776 VQSHKKVNQEEDNDFEEPEDE--ERMSEREEDDNTSNIGERFKI---------------- 817
++ +K +EE +DE + + ED + GE K
Sbjct: 1497 DEAKRKQRSAAHASYEEGDDEVMDNVPSTMEDIEAAFSGESSKKSPNAMDVDSDSSDSES 1556
Query: 818 -------EFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC-----------KLLFLPSNL 859
++ + T+ K + ++ + +D+ W KLL + N+
Sbjct: 1557 SDGSVNEDWAEQTSALEKALQENSKYINAFRFDEVKARWAEFDLTLAAQSQKLLLI--NI 1614
Query: 860 FEE-----------------------KESKHLLKTDGINVNFISQYRH-LLDLNKLYVND 895
E E L +GIN + + ++DL+ LY ND
Sbjct: 1615 VERVCRQSVIHEIPNISRVMKPPPKAGEDGVSLTAEGINFRDLWNFGFGVVDLDNLYTND 1674
Query: 896 IHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRL 955
I + TYG+EAA I+ E++ +F YGI V PRHL L+ADY T +G + NR+GI
Sbjct: 1675 IGAVLHTYGVEAARAAIVAEMRGIFDTYGIAVSPRHLFLIADYQTAAGGFRPFNRSGIAE 1734
Query: 956 NPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLR 1007
+ S + K +FEM + I +++ G D+L+ PS+++++G+ GTG ++R
Sbjct: 1735 SSSTLLKASFEMTMAFIGGSALHGEVDTLKTPSSKLVVGRPVSSGTGTPEIR 1786
>gi|320582105|gb|EFW96323.1| alpha subunit of RNA polymerase I [Ogataea parapolymorpha DL-1]
Length = 1631
Score = 591 bits (1524), Expect = e-166, Method: Compositional matrix adjust.
Identities = 381/1084 (35%), Positives = 564/1084 (52%), Gaps = 158/1084 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA L N SQYL P GSP+ GLIQDH+ +G L+ +DTF TR +Y LVY CI
Sbjct: 609 RAEAFNLANTDSQYLTPTAGSPVRGLIQDHISAGVWLTSKDTFFTRDKYQQLVYG--CIR 666
Query: 73 -----NTEIR--TLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGI--LDK 123
+T +R T+ P + KP PLWTGKQV++T+++N+ P++ L GI K
Sbjct: 667 PEDGHSTSLRLVTVAPAVIKPQPLWTGKQVITTILLNIKPQE---------LPGINLRSK 717
Query: 124 KQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLL 183
+ + +G + V ++GELL GILDK Q+G++QYG +H++ + +G A L
Sbjct: 718 NKIKNEYWG--DGSRENEVLFQNGELLCGILDKSQYGASQYGFIHSLHEVYGPTVAGKAL 775
Query: 184 SCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDT-- 241
S L +LFT Y +G T G+ D+ + ++ ++ R+ ++ ++ +G AA L +
Sbjct: 776 SVLGRLFTNYNMMMGLTCGMDDLKLTEDGNKWRSSLLEESSDIGRIAAAEVTNLDREVRV 835
Query: 242 -DPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFM 300
DPE + +++E + A +D +S ++ +T+ + C+P G ++ FPAN +Q M
Sbjct: 836 DDPEFLR-RMEEILRDDGKL-AILDAVAQSKVNAITSKVVSQCVPAGTMKKFPANAMQTM 893
Query: 301 VESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMT 360
SGAKGS VN QI CLLGQ LEG+R +MVSG+TLP F P+E RAGG++ RF +
Sbjct: 894 ALSGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPCFKPFETDVRAGGYIKNRFYS 953
Query: 361 GIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQV 420
GI+PQE++FHCMAGREGLIDTAVKT+ SGYLQRCL K LEG+ V YD T+R++D +LIQ
Sbjct: 954 GIRPQEYYFHCMAGREGLIDTAVKTANSGYLQRCLTKQLEGVHVSYDNTIRNADGTLIQF 1013
Query: 421 LYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGK 480
LYG D +DVTK Y+ QF F +N + L K P S+ L T S K
Sbjct: 1014 LYGGDSIDVTKESYM--HQFKFFLENYNSL--------LQKYSPSSIDNLDTETAVSYNK 1063
Query: 481 PNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLA 540
KF L +Q A Y + K P +S + P + GS+S+
Sbjct: 1064 ----------KFRKQLKKQ------AALPHYAQSLKY--DPTVSVYNPSKYLGSVSDKFE 1105
Query: 541 DSVVKY-------------TKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIG 587
D + K+ K R + KF ++ K + SL NPGE VG++A+QSIG
Sbjct: 1106 DELDKFIEENQHLFVSGKDAKTRGGLTQ-KKFKALMQLKYMRSLVNPGEAVGIVASQSIG 1164
Query: 588 EPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKAN 647
EPSTQMTLNTFHFAG G NVTLGIPRLREI+M A+ +IKTP M +P L + A+
Sbjct: 1165 EPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTASASIKTPQMTLPIL--DDVDDAAAD 1222
Query: 648 RLAKSMTRITMADVLEKVKIKEWL-EISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIID 706
KS+T+I ++ + V + E + +Y++ F Y + V ++
Sbjct: 1223 AFCKSITKIRFSEFISDVSVVETTGSTGAQAARSYEINMRFFDCSDYEQEYDVTKEELEH 1282
Query: 707 HFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRVDVSS 766
+ KF++ LE AI K + K + E G A+ R
Sbjct: 1283 VIKTKFIQALETAIIKEVKKQKKATS-----------------ESLPAVGKAVARSQTEL 1325
Query: 767 DEERD---EEDAVQSHKKVNQEEDNDFEEPEDEE----RMSEREEDDNT----------- 808
+ +EDA K N ++ ++ P+DEE R +E+ +D++
Sbjct: 1326 GAQTTAVVDEDADDEKLKSNTKQAVSYDGPDDEEVETMRRAEKSDDESLLDDSSSGSESE 1385
Query: 809 --------------SNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC---- 850
SN+ K + ++V+ HN V +++YD ++ WC
Sbjct: 1386 SDDEDDKMDVDAAKSNL---VKENMSKAARERQQEVIINHNFVSQFNYDDEHGSWCDFKL 1442
Query: 851 -------KLLFLPSNLF---------------------EEKESKHLLKTDGINVNFISQY 882
KLL + N+ E ++ K +L T+G+N + ++
Sbjct: 1443 ELSADTQKLLMV--NIIEAVCKAVVVREVSGIGRCLHPENEQGKRILVTEGVNFGAMWEH 1500
Query: 883 RHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHS 942
+++N + NDI + TYG+EAA I+ EV NVF Y I V RHL L+ADYMT
Sbjct: 1501 DAFINVNDIRSNDIAAVLRTYGVEAARNTIVNEVNNVFGRYAISVSSRHLDLIADYMTRE 1560
Query: 943 GTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTG 1002
GTY+A NR GI + S KM++E + + +A + + L++PSAR+++G+ GTG
Sbjct: 1561 GTYLAFNRQGIDSSTSSFTKMSYETTCQFLTKAVLDNDREELQSPSARIVIGKLNNVGTG 1620
Query: 1003 LFQL 1006
F +
Sbjct: 1621 SFDV 1624
>gi|316996999|dbj|BAJ52627.1| RNA polymerase I largest subunit [Stephanoeca diplocostata]
Length = 1031
Score = 590 bits (1521), Expect = e-165, Method: Compositional matrix adjust.
Identities = 387/1070 (36%), Positives = 560/1070 (52%), Gaps = 130/1070 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA+ + + +QY + GSPL GLIQDHV+SG+++ RD F + E+ L+Y A+
Sbjct: 11 RAEAADIAHAHNQY-ISLGGSPLRGLIQDHVVSGSRMICRDAFFEKDEFQQLLYAAMGDT 69
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLS---------GILDK 123
I +PP + KP LWTGKQ++S++++NLT + G+ + G D
Sbjct: 70 GGTIDYVPPAMLKPRQLWTGKQIISSMLLNLTRGRTGLNLKGKTQTNNAWTAPTIGPHDI 129
Query: 124 KQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLL 183
+ + + V R G +L GILDKKQ GS+ GLVHA + +G A +LL
Sbjct: 130 PGLPAGTFEGAQLEGEGTVLFRDGLMLIGILDKKQIGSSAKGLVHACQEVYGNAVAGALL 189
Query: 184 SCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDP 243
+ L +LFT + T G+ D+L+ E + +R ++ KAR G P + D
Sbjct: 190 AALGRLFTAMNKFHAHTFGIEDVLLNAEGENERNAVLAKARLCGFPETAKYTNAPPNVDA 249
Query: 244 EIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVES 303
+ ++ + + A +D S + I + P L++PFP N+LQ MV++
Sbjct: 250 ATLKKNVETIFRDSKEM-AGLDAVMMSANSEHQAAIVKATCPNRLLKPFPHNHLQAMVQT 308
Query: 304 GAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQ 363
GAKGSTVN QISCLLGQ LEGKR +MVSG+TLP F ++ S RAGG + RF+TG+
Sbjct: 309 GAKGSTVNATQISCLLGQQALEGKRVPVMVSGKTLPVFPQFDPSARAGGMILDRFLTGLS 368
Query: 364 PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYG 423
P E++FHCMAGREGL+DTAVKTSRSGYLQRCLVKH+E L V YD+TVRD+D S++Q +YG
Sbjct: 369 PPEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKHMEDLQVGYDLTVRDADKSVVQFMYG 428
Query: 424 EDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNF 483
EDGLDV+K L + F F++ N Y +L+
Sbjct: 429 EDGLDVSKTAQLDN--FPFMQQN------YMALLD------------------------- 455
Query: 484 IFSPHRTKFTMDLLEQWYQLD--DKARKKYRKKFKACPQ--PLISTFQPDAHFGSISENL 539
KF LE + D KARK +K P++S +PD ++GS+SE+
Sbjct: 456 -------KFGAANLESVFPGDFGTKARKLMKKMSDGSKSGDPVLSKLRPDRYYGSVSEDF 508
Query: 540 ADSVVKYTKGRTDASHVD-------KFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQ 592
+ +V Y K D K ++ K SLA+PGE VGVLAAQ+IGEPSTQ
Sbjct: 509 SAAVDAYVKSMPDVVTTSGRKVTPKKMKQLMLLKWFRSLADPGEPVGVLAAQAIGEPSTQ 568
Query: 593 MTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKS 652
MTLNTFHFAGR DMNVTLGIPRLREILM A+ IKTP M+ P + K LA
Sbjct: 569 MTLNTFHFAGRSDMNVTLGIPRLREILMTASVNIKTPIMKAPLID-----PTKGAALAGR 623
Query: 653 MTRITMADVLEKVKIKEWL--EISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFER 710
+ R+T+ADVL +V +KE L E+S Y++ F FIP Y +K S+ ++++ E
Sbjct: 624 LCRVTLADVLRRVTVKEQLVREVSGARDRVYEIHFEFIPEDEYLEKFSITQAEVMAGCEH 683
Query: 711 KFLKELEVAIAK-RAAQG-----LKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRVDV 764
F +A+ K R +G N+ + D + DD A+ A A D
Sbjct: 684 FFAYRFIMALIKSRKGRGGVGAVFAAANVGVNPDMDGNGGADDADTSAQSASATRSGNDS 743
Query: 765 SSDEERDEE------DAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNTSNIGERFKIE 818
+E+ DE+ + S N+ + +++ E+E E D+ G + K+
Sbjct: 744 DDEEDDDEDIGGDDMGTLASKSHANRTQVAAYDDNEEE----SGETTDDAVAAGAQRKVA 799
Query: 819 FRDSTNV---FVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNLFEEKESKH-------- 867
T ++ V++ + Y ++ H WCK+ F+ E +H
Sbjct: 800 TMTGTRSRTDRIQLVLSHAQHIRAYDFNDDEH-WCKVTL----AFDSDEQRHSFVSFFEK 854
Query: 868 -----------------------------LLKTDGINVNFISQYRHLLDLNKLYVNDIHY 898
+L+ +G N+ + + ++++N + NDIH
Sbjct: 855 HASLIEIRATKGINRCVYIKGDGHKGETDMLQIEGQNLQELWNHPDIINVNSVSTNDIHA 914
Query: 899 MASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPS 958
+ TYG+EAA I+R+V VF VYGI++DPRH++LVAD MT G Y AMNR G+R N S
Sbjct: 915 ILRTYGVEAARATIVRQVVEVFDVYGIKIDPRHMALVADTMTAQGGYRAMNRMGLRPNVS 974
Query: 959 FIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRN 1008
+ KM+FE + +R A + D++ + SA++++G GTG F LRN
Sbjct: 975 PLLKMSFESTFDFLRTACLHRESDAIDSSSAQLVVGCPTHGGTGAFSLRN 1024
>gi|405120183|gb|AFR94954.1| RNA polymerase I largest subunit [Cryptococcus neoformans var. grubii
H99]
Length = 1727
Score = 590 bits (1520), Expect = e-165, Method: Compositional matrix adjust.
Identities = 388/1082 (35%), Positives = 569/1082 (52%), Gaps = 144/1082 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA + N +QYLVP G PL GLIQDHV++G + + +F TR +Y L+Y AL
Sbjct: 698 RAEAQMIANTDNQYLVPTSGGPLRGLIQDHVVAGVWMCNKSSFFTREQYFQLIYGALRTE 757
Query: 73 N-----TEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
N + I TLPP I+KP PLWTGKQ++ST++ NLTP + + L S + +
Sbjct: 758 NNYTGRSRIITLPPAIFKPKPLWTGKQIMSTILTNLTPSNAQGL---NLTSRNKVQNKLW 814
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
A+ + +V G L+ G+LDK Q+G++ YGLVH+V + +G A LL L+
Sbjct: 815 RRDDSSDPAMSEENVIFLDGHLVCGVLDKSQYGASGYGLVHSVHELYGPYVANRLLGVLS 874
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDT---DPE 244
+L T YLQ F+ + D+++ E ++ R I++KA G AA +GLP + DP+
Sbjct: 875 RLLTKYLQHDAFSCRMDDLILTAEGEKIRKDILDKASGDGAIAAMKYVGLPEGSKIEDPD 934
Query: 245 I---ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMV 301
++ +L+E A +D +S +K T+ IN LP+ L+ PFP NN+Q M
Sbjct: 935 TAKNLAIRLEEILRD-DHLMAGLDAVMQSAFNKTTSKINNDVLPDHLVRPFPDNNMQMMT 993
Query: 302 ESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTG 361
SGAKGS VN QIS LLGQ LEG+R MVSG+TLPSF ++ S RAGG+V RF+TG
Sbjct: 994 ISGAKGSKVNASQISTLLGQQALEGRRVPTMVSGKTLPSFKAFDTSARAGGYVANRFLTG 1053
Query: 362 IQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVL 421
I+PQE++FHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEG+ VHYD TVRDSD S++Q L
Sbjct: 1054 IRPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGVKVHYDHTVRDSDSSVLQFL 1113
Query: 422 YGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKP 481
YGED LDVTK+ +L +F F N L+LL K + ++GK
Sbjct: 1114 YGEDSLDVTKQTHLN--KFDFAAANH---------LSLLNK---------VRPGDTAGK- 1152
Query: 482 NFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQ--PLISTFQPDAHFGSISENL 539
+ D+A +K K + P +S + P + GS+SE
Sbjct: 1153 ---------------------VSDEALSHMKKALKKPHKHVPALSEYSPSRYIGSMSEAY 1191
Query: 540 ADSVVKYT----------KGRTDASHV-------DKFYDMIFYKNLLSLANPGENVGVLA 582
A + Y KG AS +F + + + SL PGE VG+LA
Sbjct: 1192 AKKLNNYIEDNKLGYIAKKGENKASPYTSERVPEKEFLGLARARYMRSLVEPGEAVGLLA 1251
Query: 583 AQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKL 642
+Q +GEPSTQMTLNTFH AG G NVTLGIPRLREI+M A+ TP+M++P +
Sbjct: 1252 SQGVGEPSTQMTLNTFHLAGHGAANVTLGIPRLREIVMTASSKPTTPTMKLPLREHIS-- 1309
Query: 643 EKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFC----FIPAHMYRDKTS 698
+K K ++R+T+++V+E+V + E L + Q K+ F P Y +
Sbjct: 1310 DKDIETFVKQVSRLTLSEVVERVTVTERLSSKSSESDSRQRKYTVLLEFYPPEEYGTEYE 1369
Query: 699 VKPSKIID----HFERKFLKELEVAIAKRA------AQGLKNMNIEQSRDQM-EDDVEDD 747
+ P ++ + HF + KE++ I + A AQ K + D+ E++V+ +
Sbjct: 1370 ITPEQLHESLAWHFAPRLKKEIQNEIRRVAKTKEQEAQVGKGRKVRVGGDEGDEEEVDRE 1429
Query: 748 EGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPED------------ 795
G L D S + + A Q + + + D+ + ED
Sbjct: 1430 PDVRRRGRDDELDNDDEDSYQLKRAAQAKQHEYEADSDVDSGVADLEDFVEKELEEDDEE 1489
Query: 796 --------EERMSEREED-----------------DNTSNIGERFKIEFRDST-NVFVKD 829
+ + ++ +D D S +F +EF S + + D
Sbjct: 1490 DVEDDAAEKAKKDQKADDWAELFKLASKYATTFSFDGHSGKSAQFDLEFPASAPKLLLVD 1549
Query: 830 VVNQ---HNIVHKYSYDKKNHMWCKLLFLPSNLFEEKESKHLLKTDGINVNFI-SQYRHL 885
++ + +VH+ +N C +F F L T+G N+ + + L
Sbjct: 1550 IIERTCRAAVVHEI----ENIGRCMKIFSDKGEFTRS-----LITEGSNLRGMWALADEL 1600
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+DL++L NDI+ + +T+G+EAA R II EV +VF YGI VD RHL+++ADYMTH+G +
Sbjct: 1601 VDLDRLSSNDIYAILTTFGVEAARRAIIDEVSSVFGAYGIAVDYRHLTIIADYMTHAGGF 1660
Query: 946 VAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQ 1005
NR GI S + K +FE + + +A++ G D L +P+A++++G+ GTG F
Sbjct: 1661 RPFNRTGISAKSSPLLKASFETTVAFLSEATLHGDFDDLTSPAAKIVMGKPSASGTGAFD 1720
Query: 1006 LR 1007
+R
Sbjct: 1721 IR 1722
>gi|58266720|ref|XP_570516.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21]
gi|134110900|ref|XP_775914.1| hypothetical protein CNBD3210 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258580|gb|EAL21267.1| hypothetical protein CNBD3210 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226749|gb|AAW43209.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 1727
Score = 587 bits (1513), Expect = e-164, Method: Compositional matrix adjust.
Identities = 389/1083 (35%), Positives = 569/1083 (52%), Gaps = 146/1083 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA + N +QYLVP G PL GLIQDHV++G + + +F TR +Y L+Y AL
Sbjct: 698 RAEAQMIANTDNQYLVPTSGGPLRGLIQDHVVAGVWMCNKSSFFTREQYFQLIYGALRTE 757
Query: 73 N-----TEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
N + I TLPP I+KP PLWTGKQ++ST++ NLTP + + L S + +
Sbjct: 758 NNYTGRSRIITLPPAIFKPKPLWTGKQIMSTILTNLTPSNAKGL---NLTSRNKVQNKLW 814
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
A+ + +V G L+ G+LDK Q+G++ YGLVH+V + +G A LL L+
Sbjct: 815 RRDDSSDPAMSEENVIFLDGHLVCGVLDKSQYGASGYGLVHSVHELYGPYIANRLLGVLS 874
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDT---DPE 244
+L T YLQ F+ + D+++ E ++ R I++KA G AA +GLP + DP+
Sbjct: 875 RLLTKYLQHDAFSCRMDDLILTAEGEKIRKDILDKASGDGAIAAMKYVGLPEGSKIEDPD 934
Query: 245 I---ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMV 301
++ +L+E A +D +S +K T+ IN LP+ L+ PFP NN+Q M
Sbjct: 935 TAKNLAIRLEEILRD-DHLMAGLDAVMQSAFNKTTSKINNDVLPDHLVRPFPDNNMQMMT 993
Query: 302 ESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTG 361
SGAKGS VN QIS LLGQ LEG+R MVSG+TLPSF ++ S RAGG+V RF+TG
Sbjct: 994 ISGAKGSKVNASQISTLLGQQALEGRRVPTMVSGKTLPSFKAFDTSARAGGYVANRFLTG 1053
Query: 362 IQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVL 421
I+PQE++FHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEG+ VHYD TVRDSD S++Q L
Sbjct: 1054 IRPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGVKVHYDHTVRDSDSSVLQFL 1113
Query: 422 YGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKK-HPLSLALLLLLTFKSSGK 480
YGED LDVTK+ +L +F F N L+LL K P +A GK
Sbjct: 1114 YGEDSLDVTKQTHLN--KFDFAAAN---------HLSLLNKVRPGDIA----------GK 1152
Query: 481 PNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQ--PLISTFQPDAHFGSISEN 538
+ D+A +K K + P +S + P + GS+SE
Sbjct: 1153 ----------------------VSDEALSHMKKALKKPHKHVPALSEYSPSRYIGSMSEA 1190
Query: 539 LADSVVKYT----------KGRTDASHV-------DKFYDMIFYKNLLSLANPGENVGVL 581
A + Y KG + AS +F + + + SL PGE VG+L
Sbjct: 1191 YAKKLNNYIEDNKLGYITKKGESKASPYTSERVPEKEFLGLARARYMRSLVEPGEAVGLL 1250
Query: 582 AAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPK 641
A+Q +GEPSTQMTLNTFH AG G NVTLGIPRLREI+M A+ TP+M++P +
Sbjct: 1251 ASQGVGEPSTQMTLNTFHLAGHGAANVTLGIPRLREIVMTASSKPTTPTMKLPLREHIS- 1309
Query: 642 LEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFC----FIPAHMYRDKT 697
+K K ++R+T+++V+E+V + E L + Q K+ F P Y +
Sbjct: 1310 -DKDIETFVKQVSRLTLSEVVERVTVTERLSSKSSESDSRQRKYTVLLEFYPPEEYGTEY 1368
Query: 698 SVKPSKIID----HFERKFLKELEVAIAKRA------AQGLKNMNIEQSRDQM-EDDVED 746
+ ++ + HF + KE++ I + A AQ K + D+ E++V+
Sbjct: 1369 EITSEQLHESLAWHFAPRLKKEIQNEIRRVAKTKEQEAQVGKGRKVRVGGDEGDEEEVDR 1428
Query: 747 DEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPED----------- 795
+ G L D S + + A Q + + + D+ + ED
Sbjct: 1429 EPDVRRRGRDDELDNDDEDSYQLKRAAQAKQHEYEADSDADSGVADLEDFVEKELEEDDE 1488
Query: 796 ---------EERMSEREED-----------------DNTSNIGERFKIEFRDST-NVFVK 828
+ + ++ +D D S +F +EF S + +
Sbjct: 1489 EDVEDDAAEKAKKDQKADDWAELFKLASKYATTFSFDGHSGKSAQFDLEFPASAPKLLLV 1548
Query: 829 DVVN---QHNIVHKYSYDKKNHMWCKLLFLPSNLFEEKESKHLLKTDGINVNFI-SQYRH 884
D++ + ++VH+ +N C +F F L T+G N+ + +
Sbjct: 1549 DIIERTCRASVVHEI----ENIGRCMKIFSDKGEFTRS-----LITEGSNLRGMWALADE 1599
Query: 885 LLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGT 944
L+DL++L NDI+ + T+G+EAA R II EV +VF YGI VD RHL+++ADYMTH+G
Sbjct: 1600 LVDLDRLSSNDIYAILQTFGVEAARRAIIDEVSSVFGAYGIAVDYRHLTIIADYMTHAGG 1659
Query: 945 YVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
+ NR GI S + K +FE + + +A++ G D L +P+A++++G+ GTG F
Sbjct: 1660 FRPFNRTGISAKSSPLLKASFETTVAFLSEATLHGDFDDLTSPAAKIVMGKPSASGTGAF 1719
Query: 1005 QLR 1007
+R
Sbjct: 1720 DIR 1722
>gi|71015094|ref|XP_758775.1| hypothetical protein UM02628.1 [Ustilago maydis 521]
gi|46098565|gb|EAK83798.1| hypothetical protein UM02628.1 [Ustilago maydis 521]
Length = 1795
Score = 586 bits (1510), Expect = e-164, Method: Compositional matrix adjust.
Identities = 391/1132 (34%), Positives = 569/1132 (50%), Gaps = 190/1132 (16%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S +AE ++ N +QYL P G+PL GLIQDHV++G ++ ++T TRAEY ++Y A
Sbjct: 710 SQAARAECYYVANTDNQYLTPTSGNPLRGLIQDHVVAGVWMTSKNTLYTRAEYQQMLYGA 769
Query: 69 L-----CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDK 123
L + T+PP + KP PLWTGKQV+STV++NL P + + K
Sbjct: 770 LRPEGKYTGGGRVLTVPPALLKPEPLWTGKQVISTVLLNLKPAKADGLN-------LTSK 822
Query: 124 KQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLL 183
+ +G HA + V I GELL G+LDK FG++ +GLVHA+++ +G+E A LL
Sbjct: 823 AKVAGRMWGKDHAS-EEKVIIEDGELLQGVLDKAAFGASSFGLVHAIFEIYGSETAGKLL 881
Query: 184 SCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLP----- 238
S L++LFT +LQ F+ + D+L+ +E D R ++ A+ G A +GL
Sbjct: 882 SILSRLFTKFLQTNAFSCRMDDLLLSKEGDEWRRTTLDAAKNQGKGVAMKTVGLEGEDEK 941
Query: 239 -LDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNL 297
DTD + +L+E + A +D + + + +T+ I + CLP GL + FP NN+
Sbjct: 942 NPDTDRNL-RIRLEEVLRDDDKL-AVLDGEMMNSSNALTSKIIESCLPAGLYKKFPENNM 999
Query: 298 QFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGR 357
Q M SGAKGS VN QISCLLGQ LEG+R +MVSG++LPSF P+E S RAGGFV GR
Sbjct: 1000 QMMTGSGAKGSAVNVSQISCLLGQQALEGRRVPLMVSGKSLPSFRPFETSARAGGFVSGR 1059
Query: 358 FMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSL 417
F+TGI+PQE+FFHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEG+ + YD TVR++D S+
Sbjct: 1060 FLTGIRPQEYFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGVHIQYDNTVRNADGSV 1119
Query: 418 IQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKH-PLSLALLLLLTFK 476
+Q YGED LD TK +Y+ QF F N + N K++ P L ++
Sbjct: 1120 LQFNYGEDALDTTKSKYI--GQFDFTAANFE---------NYNKRYDPKQLGEVVEAELA 1168
Query: 477 SSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSIS 536
+ + PH KY P++S + P HFGS+S
Sbjct: 1169 AEHMKKALKKPH---------------------KY--------DPVLSVYLPSTHFGSMS 1199
Query: 537 ENLADSVVKYTK----------------------GRTDASHVDK------------FYDM 562
E A + Y + +A+ V+K F M
Sbjct: 1200 EKYAKEIEAYIEKNPSKLLADKKKKSKKRKSEASAPDEATAVEKLRFAKEKLGVEAFRAM 1259
Query: 563 IFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMA 622
L +PGE VG+LAAQ +GEPSTQMTLNTFHFAG G NVTLGIPRLREI+M A
Sbjct: 1260 CKVLYHRGLVDPGEAVGLLAAQGVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTA 1319
Query: 623 TKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEP----- 677
++ IKTP M +P L + + K K +R+ ++ V+++ + E +ISP+
Sbjct: 1320 SQHIKTPIMRLPVLDGITADQIKT--FCKDGSRLVLSQVIDEAIVTE--KISPKSEGTGF 1375
Query: 678 --HMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAI-----AKRAAQGLKN 730
Y ++ F PA +++ + + I+ + F LE +I ++ L+
Sbjct: 1376 HRQKTYTVRLNFYPADECKEEYNCTTAHILHGLQETFAPNLENSINNEMRKQKREHALQA 1435
Query: 731 MNIEQSR----DQMEDDVEDDEGEGAEG-AGAALGRVDVSSDEERDEE---------DAV 776
I + R + D D++GE A G G + R + + DEE DA
Sbjct: 1436 AAIGKGRVFSDNAPAGDNADEDGERANGVVGRSQTRSRGNEADSDDEEDASSDAGDGDAD 1495
Query: 777 QSHKKVNQEEDNDFEEPEDEERMSEREEDD---NTSNIGERFKI---------------- 817
+ +K +EE +DEE +D SN G + +
Sbjct: 1496 DAKRKQKSAAHASYEEGDDEEMGGPSTTEDIEAAFSNGGSKKRSSDVMDVDSDSESDSSE 1555
Query: 818 ------EFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC-----------KLLFL----- 855
E+ + T + + ++ + +D W KLL +
Sbjct: 1556 DGSINEEWAEQTCALERALQENSKYINAFRFDDVKARWAEFDLTLNTQSQKLLLINIVER 1615
Query: 856 -------------------PSNLFEEKESKHLLKTDGINVNFISQYRH-LLDLNKLYVND 895
P EE S L +GIN + + ++DL+ LY ND
Sbjct: 1616 VCRQSVIHEIPNIARVMKPPPKAGEEGVS---LTAEGINFRDLWDFGFGVIDLDNLYTND 1672
Query: 896 IHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRL 955
I + TYG+EAA I+ E++ +F YGI V PRHL L+ADY T +G + NR+GI
Sbjct: 1673 IGAVLHTYGVEAARAAIVAEMRGIFDTYGIAVSPRHLFLIADYQTAAGGFRPFNRSGISE 1732
Query: 956 NPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLR 1007
+ S + K +FEM + I +++ G D L+ PS+++++G+ GTG ++R
Sbjct: 1733 SSSTLLKASFEMTMAFIGGSALHGEVDMLKTPSSKLVVGRPVNSGTGTPEIR 1784
>gi|296413787|ref|XP_002836590.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295630418|emb|CAZ80781.1| unnamed protein product [Tuber melanosporum]
Length = 1056
Score = 584 bits (1505), Expect = e-163, Method: Compositional matrix adjust.
Identities = 385/1083 (35%), Positives = 582/1083 (53%), Gaps = 142/1083 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA + N SQYLVP G PL GLIQDH++ G L+ RDT TR EY L+Y C+L
Sbjct: 12 RAEAKEIANTDSQYLVPTSGKPLRGLIQDHLVMGVWLTNRDTMFTRDEYQQLLYS--CLL 69
Query: 73 ----------NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILD 122
++ I TLPP+I KP LWTGKQV++T++ N+ PK HG L+
Sbjct: 70 PESNALFKGRSSRIITLPPSIMKPNRLWTGKQVITTILENIKPK----YFHG--LTLYSK 123
Query: 123 KKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISL 182
+ G + + + V G +SGILDK Q G +++GL+H++++ +G+ A S+
Sbjct: 124 SRTPGDSWH---PGCEEGQVIFHDGYFVSGILDKSQLGPSEFGLIHSLYEIYGSTVAGSM 180
Query: 183 LSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDT- 241
LS L +L T +L T G+ D+L+ + D R ++ ++R+G + + +GL D+
Sbjct: 181 LSILGRLLTKFLHMRAHTCGMDDLLLTPDGDANRRSVLKGSKRVGNDLSAEYVGLEKDSV 240
Query: 242 DPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMV 301
+ ++++L+E + R +D + + T+ + CLP GL + FP NN Q M
Sbjct: 241 NSTELAARLEEVLRDENKSRT-LDLKANAQTKNFTSQVIGQCLPSGLQKHFPRNNFQAMT 299
Query: 302 ESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTG 361
SGAKGS VN QISCLLGQ LEG+R +MVSG+TLP F P+E RAGG++ RF+TG
Sbjct: 300 VSGAKGSDVNASQISCLLGQQVLEGRRVPVMVSGKTLPCFKPFETDVRAGGYITDRFLTG 359
Query: 362 IQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVL 421
++PQE++FHCMAGREGLIDTAVKTSRSGYLQRCL+K +EG+ VHYD TVRDSD SL+Q L
Sbjct: 360 VRPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLIKGMEGIQVHYDNTVRDSDGSLVQFL 419
Query: 422 YGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKK------HPLSLALLLLLTF 475
YGED LDV+K+++L KQF FL NI + K++ +L+ + LS L L
Sbjct: 420 YGEDALDVSKQKHL--KQFKFLAQNINSVVR-KLVDDLVNEDLGPRIQRLSDQLNL---- 472
Query: 476 KSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSI 535
G + + + K T +L+ + +S + P GS+
Sbjct: 473 -GVGSEHMKKAMKKYKKTGNLV--------------------ASEVTMSLYSPSRFLGSV 511
Query: 536 SENLA-----------DSVV------KYTKGRTDASHVDK--FYDMIFYKNLLSLANPGE 576
SEN A D ++ K+ G + +DK F ++ K L S+ PGE
Sbjct: 512 SENFALAREKYLTEDPDGIIVSSKRSKHLVGSQMSRGLDKSEFRHLMALKYLRSVIEPGE 571
Query: 577 NVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFL 636
VG++A QSIGEPSTQMTLNTFH AG NVTLGIPRLREI+M A+ + TPSM +
Sbjct: 572 AVGIIAGQSIGEPSTQMTLNTFHLAGHATKNVTLGIPRLREIVMTASATLATPSMILTLR 631
Query: 637 PDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCFIPAHMYRDK 696
P++ ++ A AK +++ +++V++ + I E L + + Y ++ PA Y ++
Sbjct: 632 PEVS--DRDAKIFAKRCSKLLLSEVIDNISIIENLTKTSK---EYLLRLELFPASDYEEE 686
Query: 697 TSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQM-EDDVEDDEGEGAEGA 755
S+ ++++ ++ FL +LE AI K + N +S++++ +DD + GE +
Sbjct: 687 YSITKRQVLNILKKVFLAQLERAINK-----VLNPKKAKSKERIGKDDAMPNIGESSGTI 741
Query: 756 GAA----------LGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEP-EDEERMSEREE 804
A D +SD+E E+DA + ++ + E ++ P +DEE +S R +
Sbjct: 742 EEAPRYARAAAADAEDGDANSDDE-GEDDATNAKQRSRKAEAVSYDNPDDDEEEISRRAQ 800
Query: 805 DDNTSNIGER-------FKIEFRDSTNVFVK-----------DVVNQHNIVHKYSYDKKN 846
++ N GE I ++ N K D ++ + + K+ +DK+
Sbjct: 801 ASDSDNEGEDQTDEGLGTDINMQEDRNPIDKAKGGKKATISHDWISDN--IKKFEFDKEG 858
Query: 847 HMWC-----------KLLFLP-------SNLFEE-----KESKHLLKTDGINVNFISQYR 883
WC K+L LP + E +K L +G+N + +
Sbjct: 859 GQWCEVKLQYPVEAPKVLMLPIVEKVCRETVIHELSGIGSVAKCKLAVEGVNFSAFWNEQ 918
Query: 884 HLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSG 943
+D N L NDI YG+EAA II+E+ VF +GI V+ RHL+L+AD MT G
Sbjct: 919 ESIDPNTLETNDIAAFLRVYGVEAARGNIIKEMNAVFGGHGISVNIRHLNLIADTMTRGG 978
Query: 944 TYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGL 1003
+ NR G++ + S KM+FE + +A +G DSL +PS+R++LG+ G+G
Sbjct: 979 GFTPFNRQGLKTSVSPFLKMSFETTCNFLTEAVSEGDFDSLTSPSSRIVLGKLSGVGSGS 1038
Query: 1004 FQL 1006
F +
Sbjct: 1039 FDV 1041
>gi|238878529|gb|EEQ42167.1| DNA-directed RNA polymerase I 190 kDa polypeptide [Candida albicans
WO-1]
Length = 1577
Score = 582 bits (1501), Expect = e-163, Method: Compositional matrix adjust.
Identities = 372/1085 (34%), Positives = 565/1085 (52%), Gaps = 143/1085 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA L N +QYL P GSPL GLIQDH+ +G L+ +DTF R Y L+Y CI
Sbjct: 538 RAEALNLANTDNQYLTPTSGSPLRGLIQDHISAGVWLTNKDTFFNRETYQQLIYG--CIR 595
Query: 73 -------NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQ 125
I T+PP I+KP LWTGKQV++TV++N+ P + + ++ K +
Sbjct: 596 PEDGHTSKNRIVTVPPAIYKPEMLWTGKQVITTVLLNIKPDNVPGVN-------LISKNK 648
Query: 126 FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSC 185
S + + + V ++GELLSGILDK Q+G++Q+G+VH++ + +G A LS
Sbjct: 649 IKSDYWS--ESSTENEVIFKNGELLSGILDKSQYGASQFGIVHSLHEVYGPTVAGKALSV 706
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDT---D 242
L +LFT Y+ FT G+ D+ + E + R I+ ++ +G AA L DT +
Sbjct: 707 LGRLFTNYIMMTAFTCGMDDLRLTDEGNTWRKDILKQSVDIGRVAATEVTNLDEDTKNNN 766
Query: 243 PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
E++ +L+E + +D +S ++ +T+ + C+P+G ++ FP N++Q M
Sbjct: 767 KELLR-RLEEILRDDNKL-GILDAITQSKVNAITSQVVSKCVPDGTMKRFPYNSMQAMAL 824
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
SGAKGS VN QI CLLGQ LEG+R +MVSG+TLPSF P+E RAGG++ RF +GI
Sbjct: 825 SGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPFETDARAGGYIKQRFYSGI 884
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
+PQE++FHCMAGREGLIDTAVKTSRSGYLQRCL K LEG+ V YD +VRD+D +LIQ LY
Sbjct: 885 RPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSVRDADGTLIQFLY 944
Query: 423 GEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPN 482
G D +D TK+ ++ QF F DN + L K +P +
Sbjct: 945 GGDAVDTTKQSHMN--QFKFCVDNYDAL--------LTKYNPGDMT-------------- 980
Query: 483 FIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQ--------PLISTFQPDAHFGS 534
DL + + K RK +K+ K P P+++ + P + GS
Sbjct: 981 -------ENIDTDLALSYSK---KVRKSLKKQ-KDVPHYDQVIKYDPVLNVYNPAKYLGS 1029
Query: 535 ISENLADSVVKY--------TKGRTDASHV-----DKFYDMIFYKNLLSLANPGENVGVL 581
+SE + + Y + + +A KF ++ K + SL NPGE VG++
Sbjct: 1030 VSEKFQEKLDTYVSKNPTIFAQSKEEAKSTGKITEKKFRALMQLKYMRSLINPGEAVGII 1089
Query: 582 AAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPK 641
A+QSIGEPSTQMTLNTFHFAG G NVTLGIPR+REI+M A+ +IKTP M +P L D+
Sbjct: 1090 ASQSIGEPSTQMTLNTFHFAGHGAANVTLGIPRMREIIMTASASIKTPQMTLPILADVN- 1148
Query: 642 LEKKANRLAKSMTRITMADVLEKVKIKEWL--EISPEPHMNYQMKFCFIPAHMYRDKTSV 699
+++A+ KS+ R+ M++ ++KV + E ++ +Y + F Y + +
Sbjct: 1149 -DEQADAFCKSVARVVMSEFVDKVVVTETTSQDVDGSNSRSYVIGLKFYTKEEYETEYDI 1207
Query: 700 KPSKIIDHFERKFLKELEVAIAKRAAQGLK-NMNIEQSRDQMEDDVEDDEGEGAEGAGAA 758
++ D KFL LE I K + K + + + D+E G+ E
Sbjct: 1208 SQEQLEDVITSKFLHALEGQIVKEVKKQKKPDYMPTVGKSAGKTDMETVSGKIKEIDNDD 1267
Query: 759 LGRVDVSSDEERDEEDAVQSHKKVNQE--EDNDFEEPEDEERMSEREED----------- 805
+ ++ +E+ ++V+ E +D++ E + E S+ E D
Sbjct: 1268 DDEDNEVDEDHDEEQAKQNVKQQVSYEGPDDDEIETMKKAEETSDEEMDGDNSSSSDDSD 1327
Query: 806 ---------DNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC------ 850
D ++ + K E S +V+ HN+V ++++D + WC
Sbjct: 1328 SDSDNEEDADADVDMDKPSKSELSRSAKDRQSEVIASHNMVTQFNFDDELGEWCEFKLEL 1387
Query: 851 ------KLLFLPSNLFEE-----------------------KESKHLLKTDGINVNFISQ 881
KLL + N+ E+ K K +L T+G+N +
Sbjct: 1388 NGNETQKLLMV--NIVEDLLRKVVVREIPHIGRCIRPEPDAKTGKRILTTEGVNFRAMWD 1445
Query: 882 YRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 941
+++N + ND++ + TYG+EAA I+ E+ VF YGI V RHL L+AD MT
Sbjct: 1446 QDDFINVNGITSNDVYAVLKTYGVEAARNTIVNEIYRVFDTYGISVSSRHLDLIADMMTR 1505
Query: 942 SGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGT 1001
GTY+A NR GI + S KM++E + + +A + G + L +PSA++++G+ GT
Sbjct: 1506 EGTYLAFNRQGIDSSTSAFMKMSYETTCQFLTKAVLDGDREELESPSAKIVMGKLSNVGT 1565
Query: 1002 GLFQL 1006
G F +
Sbjct: 1566 GSFDV 1570
>gi|68490869|ref|XP_710761.1| hypothetical protein CaO19.9397 [Candida albicans SC5314]
gi|68490951|ref|XP_710723.1| hypothetical protein CaO19.1839 [Candida albicans SC5314]
gi|46431960|gb|EAK91475.1| hypothetical protein CaO19.1839 [Candida albicans SC5314]
gi|46432002|gb|EAK91513.1| hypothetical protein CaO19.9397 [Candida albicans SC5314]
Length = 1665
Score = 582 bits (1499), Expect = e-163, Method: Compositional matrix adjust.
Identities = 372/1085 (34%), Positives = 565/1085 (52%), Gaps = 143/1085 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA L N +QYL P GSPL GLIQDH+ +G L+ +DTF R Y L+Y CI
Sbjct: 626 RAEALNLANTDNQYLTPTSGSPLRGLIQDHISAGVWLTNKDTFFNRETYQQLIYG--CIR 683
Query: 73 -------NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQ 125
I T+PP I+KP LWTGKQV++TV++N+ P + + ++ K +
Sbjct: 684 PEDGHTSKNRIVTVPPAIYKPEMLWTGKQVITTVLLNIKPDNVPGVN-------LISKNK 736
Query: 126 FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSC 185
S + + + V ++GELLSGILDK Q+G++Q+G+VH++ + +G A LS
Sbjct: 737 IKSDYWS--ESSTENEVIFKNGELLSGILDKSQYGASQFGIVHSLHEVYGPTVAGKALSV 794
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDT---D 242
L +LFT Y+ FT G+ D+ + E + R I+ ++ +G AA L DT +
Sbjct: 795 LGRLFTNYIMMTAFTCGMDDLRLTDEGNTWRKDILKQSVDIGRVAATEVTNLDEDTKNNN 854
Query: 243 PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
E++ +L+E + +D +S ++ +T+ + C+P+G ++ FP N++Q M
Sbjct: 855 KELLR-RLEEILRDDNKL-GILDALTQSKVNAITSQVVSKCVPDGTMKRFPYNSMQAMAL 912
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
SGAKGS VN QI CLLGQ LEG+R +MVSG+TLPSF P+E RAGG++ RF +GI
Sbjct: 913 SGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPFETDARAGGYIKQRFYSGI 972
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
+PQE++FHCMAGREGLIDTAVKTSRSGYLQRCL K LEG+ V YD +VRD+D +LIQ LY
Sbjct: 973 RPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSVRDADGTLIQFLY 1032
Query: 423 GEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPN 482
G D +D TK+ ++ QF F DN + L K +P +
Sbjct: 1033 GGDAVDTTKQSHMN--QFKFCVDNYDAL--------LTKYNPGDMT-------------- 1068
Query: 483 FIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQ--------PLISTFQPDAHFGS 534
DL + + K RK +K+ K P P+++ + P + GS
Sbjct: 1069 -------ENIDTDLALSYSK---KVRKSLKKQ-KDVPHYDQVIKYDPVLNVYNPAKYLGS 1117
Query: 535 ISENLADSVVKY--------TKGRTDASHV-----DKFYDMIFYKNLLSLANPGENVGVL 581
+SE + + Y + + +A KF ++ K + SL NPGE VG++
Sbjct: 1118 VSEKFQEKLDTYVSKNPTIFAQSKEEAKSTGKITEKKFRALMQLKYMRSLINPGEAVGII 1177
Query: 582 AAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPK 641
A+QSIGEPSTQMTLNTFHFAG G NVTLGIPR+REI+M A+ +IKTP M +P L D+
Sbjct: 1178 ASQSIGEPSTQMTLNTFHFAGHGAANVTLGIPRMREIIMTASASIKTPQMTLPILADVN- 1236
Query: 642 LEKKANRLAKSMTRITMADVLEKVKIKEWL--EISPEPHMNYQMKFCFIPAHMYRDKTSV 699
+++A+ KS+ R+ M++ ++KV + E ++ +Y + F Y + +
Sbjct: 1237 -DEQADAFCKSVARVVMSEFVDKVVVTETTSQDVDGSNSRSYVIGLKFYTKEEYETEYDI 1295
Query: 700 KPSKIIDHFERKFLKELEVAIAKRAAQGLK-NMNIEQSRDQMEDDVEDDEGEGAEGAGAA 758
++ D KFL LE I K + K + + + D+E G+ E
Sbjct: 1296 SQEQLEDVITSKFLHALEGQIVKEVKKQKKPDYMPTVGKSAGKTDMETVSGKIKEIDNDD 1355
Query: 759 LGRVDVSSDEERDEEDAVQSHKKVNQE--EDNDFEEPEDEERMSEREED----------- 805
+ ++ +E+ ++V+ E +D++ E + E S+ E D
Sbjct: 1356 DDEDNEVDEDHDEEQAKQNVKQQVSYEGPDDDEIETMKKAEETSDEEMDGDNSSSSDDSD 1415
Query: 806 ---------DNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC------ 850
D ++ + K E S +V+ HN+V ++++D + WC
Sbjct: 1416 SDSDNEEDADADVDMDKPSKSELSRSAKDRQSEVIASHNMVTQFNFDDELGEWCEFKLEL 1475
Query: 851 ------KLLFLPSNLFEE-----------------------KESKHLLKTDGINVNFISQ 881
KLL + N+ E+ K K +L T+G+N +
Sbjct: 1476 NGNETQKLLMV--NIVEDLLRKVVVREIPHIGRCIRPEPDAKTGKRILTTEGVNFRAMWD 1533
Query: 882 YRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 941
+++N + ND++ + TYG+EAA I+ E+ VF YGI V RHL L+AD MT
Sbjct: 1534 QDDFINVNGITSNDVYAVLKTYGVEAARNTIVNEIYRVFDTYGISVSSRHLDLIADMMTR 1593
Query: 942 SGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGT 1001
GTY+A NR GI + S KM++E + + +A + G + L +PSA++++G+ GT
Sbjct: 1594 EGTYLAFNRQGIDSSTSAFMKMSYETTCQFLTKAVLDGDREELESPSAKIVMGKLSNVGT 1653
Query: 1002 GLFQL 1006
G F +
Sbjct: 1654 GSFDV 1658
>gi|302503366|ref|XP_003013643.1| hypothetical protein ARB_00090 [Arthroderma benhamiae CBS 112371]
gi|291177208|gb|EFE33003.1| hypothetical protein ARB_00090 [Arthroderma benhamiae CBS 112371]
Length = 1642
Score = 579 bits (1492), Expect = e-162, Method: Compositional matrix adjust.
Identities = 383/1071 (35%), Positives = 578/1071 (53%), Gaps = 126/1071 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA L + QY V G PL GLIQDH+ G L+ RD+F +Y L+Y L
Sbjct: 616 RAEAMQLADTDHQYFVATSGKPLRGLIQDHLSMGVWLTCRDSFFDEDDYHQLLYSCLRPE 675
Query: 73 NT-----EIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
N+ +I +PP I+KP PLWTGKQ++STV+ N+TP ++ + LD K
Sbjct: 676 NSHTVSDKIWLMPPAIFKPQPLWTGKQIISTVLKNITPDNRAGLN--------LDSKS-- 725
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
ST + VT+R GEL+SGILDK Q G T GL+H++ + +G A L+ L
Sbjct: 726 STPGDRWGDKAEGEVTVRDGELISGILDKSQLGPTVGGLIHSIHEVYGHIVAGKLIGILG 785
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPL----DTDP 243
+L T L FT G+ D+ + +E + KR ++I +A LG E + + L D D
Sbjct: 786 RLLTKVLHMRAFTCGMDDLRLTEEGNAKRKELIQQADDLGKEISLKYVTLDENKVEDEDT 845
Query: 244 EIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVES 303
E+ +L+E + A +D YKS ++++ I + CLP GL +PFP NN+Q M S
Sbjct: 846 EL-QRRLEEVLRDDDK-HAGLDAMYKSRAGELSSEITKACLPSGLEKPFPFNNMQTMTVS 903
Query: 304 GAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQ 363
GAKGS VN ISC LGQ LEG+R +M+SG+TLPSF P+E AGG+V GRF+TGI+
Sbjct: 904 GAKGSMVNANLISCNLGQQVLEGRRVPVMISGKTLPSFQPFETKIGAGGYVFGRFLTGIK 963
Query: 364 PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRD-SDLSLIQVLY 422
P E++FH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL YD +VRD SD S++Q LY
Sbjct: 964 PHEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKAEYDTSVRDTSDGSIVQFLY 1023
Query: 423 GEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPN 482
GEDGLD+TK+++L FSFL N I S +N
Sbjct: 1024 GEDGLDITKQKHL--DSFSFLAQNYMSIVSQVNGVN------------------------ 1057
Query: 483 FIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFK-ACPQPLISTFQPDAHFGSISENLAD 541
+K D W + A KK +K K P ++ F P A++GS SE +
Sbjct: 1058 -----DSSKIHSDEASSWSK---AALKKIKKTGKIEAKDPALAHFPPGANYGSTSEKFSS 1109
Query: 542 SVVKYTKGRTDASHVDK-----------FYDMIFYKNLLSLANPGENVGVLAAQSIGEPS 590
++ KY K D DK F M+ K + S+ +PGE +G++A QS+GEPS
Sbjct: 1110 ALKKYLKSNPDNLLKDKSTGEGEITKKAFTTMMNMKYMKSVIDPGEAIGIVAGQSVGEPS 1169
Query: 591 TQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLA 650
TQMTLNTFH AG NVTLGIPRLREI+M A+ I TP+M + + EK A A
Sbjct: 1170 TQMTLNTFHLAGHAAKNVTLGIPRLREIVMTASSHIMTPTMTLKL--NKQTDEKTARLFA 1227
Query: 651 KSMTRITMADVLEKVKIKEWLEISPEPHMN-YQMKFCFIPAHMYRDKTSVKPSKIIDHFE 709
K++T++T+A+V++K+K++E + Y ++ F P Y + ++K + ++ E
Sbjct: 1228 KTITKLTLAEVVDKLKVRERVTSKGSAKAKIYDIQIDFFPPEAYCAEYAIKVNDVLRTLE 1287
Query: 710 RKFLKEL----EVAIAKR----------AAQ---GLKNMNIEQSR--DQMEDDVEDDEGE 750
KF+ L E + KR AAQ G +E++R ++ +D++ +
Sbjct: 1288 EKFIPRLVKLTEAELKKRTSEKSLSSPSAAQPEIGTSVGVVEEARREGGDNNEDDDEDLD 1347
Query: 751 GAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNTSN 810
A+ A ++ +S E DE + ++ + ++D E+ +D+++++ + D+ +
Sbjct: 1348 DAKRASSSRNNAGQASYEAPDEGEQEIIRRQDTPDLESDDEDTDDKQKLAPLDNSDSDTE 1407
Query: 811 IGERFKIEFRDSTNV--FVKDVVNQHNIVHKYSYDKKNHMWC-----------KLLFLP- 856
+ + + R N + + ++ + ++ +D +N C KLL LP
Sbjct: 1408 MEDPGPSKARKLANSRDRAEALRGKYPALTQFKFDPENGSLCTIQLQYDISTPKLLLLPL 1467
Query: 857 -----------------SNLF---EEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDI 896
S + ++ E +H++ T+G+N+ + Y+ ++D + +Y N +
Sbjct: 1468 VENAARTSVIQFIPGLGSCAYIPADKGEPEHVV-TEGVNLLAMRDYQDIIDPHSIYSNSV 1526
Query: 897 HYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RL 955
+M YG+EAA I+ EV VF +GI+VD RHL+L+AD MT +G Y A NR GI +
Sbjct: 1527 SHMLGLYGVEAARATIVSEVGTVFEGHGIKVDNRHLTLIADVMTQTGGYRAFNRMGIVKD 1586
Query: 956 NPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+ S + KM+FE + +R A ++ D+L PS+R+++G+ GTG F +
Sbjct: 1587 STSPLMKMSFETTVRFLRDAVLERDWDNLNGPSSRIVVGRVGTVGTGAFDV 1637
>gi|302666622|ref|XP_003024908.1| hypothetical protein TRV_00913 [Trichophyton verrucosum HKI 0517]
gi|291188985|gb|EFE44297.1| hypothetical protein TRV_00913 [Trichophyton verrucosum HKI 0517]
Length = 1642
Score = 578 bits (1491), Expect = e-162, Method: Compositional matrix adjust.
Identities = 381/1070 (35%), Positives = 579/1070 (54%), Gaps = 124/1070 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA L + QYLV G PL GLIQDH+ G L+ RD+F +Y L+Y L
Sbjct: 616 RAEAMQLADTDHQYLVATSGKPLRGLIQDHLSMGVWLTCRDSFFDEDDYHQLLYSCLRPE 675
Query: 73 NT-----EIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
N+ +I +PP I+KP PLWTGKQ++STV+ N+TP ++ + LD K
Sbjct: 676 NSHTVSDKIWLMPPAIFKPQPLWTGKQIISTVLKNITPDNRAGLN--------LDSKS-- 725
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
ST + VT+R GEL+SGILDK Q G T GL+H++ + +G A L+ L
Sbjct: 726 STPGDRWGDKAEGEVTVRDGELISGILDKSQLGPTVGGLIHSIHEVYGHIVAGKLIGILG 785
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL---PLDTDPE 244
+L T L FT G+ D+ + +E + KR ++I +A LG E + + L +D +
Sbjct: 786 RLLTKVLHMRAFTCGMDDLRLTEEGNAKRKELIQQADGLGKEISLKYVTLDENKVDDEDT 845
Query: 245 IISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESG 304
+ +L+E + A +D YKS ++++ I + CLP GL +PFP NN+Q M SG
Sbjct: 846 ELQRRLEEVLRDDDK-HAGLDAMYKSRAGELSSEITKACLPSGLEKPFPFNNMQTMTVSG 904
Query: 305 AKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQP 364
AKGS VN ISC LGQ LEG+R +M+SG+TLPSF P+E AGG+V GRF+TGI+P
Sbjct: 905 AKGSMVNANLISCNLGQQVLEGRRVPVMISGKTLPSFQPFETKIGAGGYVFGRFLTGIKP 964
Query: 365 QEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRD-SDLSLIQVLYG 423
E++FH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL YD +VRD SD S++Q LYG
Sbjct: 965 HEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKAEYDTSVRDTSDGSIVQFLYG 1024
Query: 424 EDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNF 483
EDGLD+TK+++L FSFL N I S +N
Sbjct: 1025 EDGLDITKQKHL--DSFSFLAQNYMSIVSQVNGVN------------------------- 1057
Query: 484 IFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFK-ACPQPLISTFQPDAHFGSISENLADS 542
+K + W + A KK +K K P ++ F P A++GS SE + +
Sbjct: 1058 ----DSSKIHSEEASSWSK---AALKKIKKTGKIEAKDPALAHFPPGANYGSTSEKFSSA 1110
Query: 543 VVKYTKGRTDASHVDK-----------FYDMIFYKNLLSLANPGENVGVLAAQSIGEPST 591
+ KY K D DK F M+ K + S+ +PGE +G++A QS+GEPST
Sbjct: 1111 LKKYLKSNPDNLLKDKSTGEGEITKKAFTTMMNMKYMKSVIDPGEAIGIVAGQSVGEPST 1170
Query: 592 QMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAK 651
QMTLNTFH AG NVTLGIPRLREI+M A+ I TP+M + + EK A AK
Sbjct: 1171 QMTLNTFHLAGHAAKNVTLGIPRLREIVMTASSHIMTPTMTLKL--NKQTDEKTARLFAK 1228
Query: 652 SMTRITMADVLEKVKIKEWLEISPEPHMN-YQMKFCFIPAHMYRDKTSVKPSKIIDHFER 710
++T++T+A+V++K+K++E + Y ++ F P Y + +++ + ++ E
Sbjct: 1229 TITKLTLAEVVDKLKVRERVTSQGSAKAKIYDIQIDFFPPEAYCAEYAIQVNDVLRTLEE 1288
Query: 711 KFLKEL----EVAIAKR----------AAQ---GLKNMNIEQSR--DQMEDDVEDDEGEG 751
KF+ L E + KR AAQ G +E++R D+ +D++ +
Sbjct: 1289 KFIPRLVKLTEAELKKRTSEKSLSSPSAAQPEIGTSVGVVEEARREGGDNDEDDDEDLDD 1348
Query: 752 AEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNTSNI 811
A+ A ++ +S E DE + ++ + ++D E+ +D+++++ + D+ +++
Sbjct: 1349 AKRASSSRNNAGQASYEAPDEGEQEIIRRQDTPDLESDDEDTDDKQKLAPVDNSDSDTDM 1408
Query: 812 GERFKIEFRDSTNV--FVKDVVNQHNIVHKYSYDKKNHMWC-----------KLLFLP-- 856
+ + R N + ++ + ++ +D +N C KLL LP
Sbjct: 1409 EDPVPSKARKLANSRDRADTLRGKYPALTQFKFDPENGSLCTIQLQYDISTPKLLLLPLV 1468
Query: 857 ----------------SNLF---EEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIH 897
S + ++ E +H++ T+G+N+ + Y+ ++D + +Y N +
Sbjct: 1469 ENAARTSVIQFIPGLGSCAYIPADKGEPEHVV-TEGVNLLAMRDYQDIIDPHSIYSNSVS 1527
Query: 898 YMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLN 956
+M YG+EAA I+ EV VF +GI+VD RHL+L+AD MT +G Y A NR GI + +
Sbjct: 1528 HMLGLYGVEAARATIVSEVGAVFEGHGIKVDNRHLTLIADVMTQTGGYRAFNRMGIVKDS 1587
Query: 957 PSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
S + KM+FE + +R A ++ D+L PS+R+++G+ GTG F +
Sbjct: 1588 TSPLMKMSFETTVRFLRDAVLERDWDNLNGPSSRIVVGRVGTVGTGAFDV 1637
>gi|119186661|ref|XP_001243937.1| hypothetical protein CIMG_03378 [Coccidioides immitis RS]
gi|392870658|gb|EAS32476.2| DNA-directed RNA polymerase I subunit [Coccidioides immitis RS]
Length = 1690
Score = 578 bits (1491), Expect = e-162, Method: Compositional matrix adjust.
Identities = 381/1077 (35%), Positives = 577/1077 (53%), Gaps = 137/1077 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA L + QYLV G PL GLIQDH+ G + RD+ +Y L+Y L
Sbjct: 663 RAEAMQLADTDHQYLVATSGKPLRGLIQDHISMGTWFTSRDSLFDEEDYHQLLYSCLRPE 722
Query: 73 NT-----EIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
N+ +I +PPTI KP P WTGKQ++ST++ N+TP+++ + S D+ + G
Sbjct: 723 NSHTVSEKIELMPPTILKPKPRWTGKQIISTILKNITPENRAGLNLIGKSSTPGDRWEIG 782
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
S + V ++ GELL GILDK Q G + GL+H+V + G A L+ L
Sbjct: 783 SEE---------GKVIVKDGELLCGILDKAQLGPSAGGLIHSVHEVFGHVVAGKLIGILG 833
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDP-EII 246
+L T +LQ FT G+ D+ + ++ D +R K + + LG E A + LD P E
Sbjct: 834 RLLTRFLQMRAFTCGMDDLRLTKKGDEERKKQLKRGDNLGHEVALQYV--TLDESPVEDK 891
Query: 247 SSQLQEAYASI---PQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVES 303
++LQ + + +A +D + S ++++I CLP GL +PFP N +Q M S
Sbjct: 892 ETELQRRLEDVLRDDEKQAGLDSMFNSRTAGLSSDITAACLPSGLEKPFPWNQMQAMTVS 951
Query: 304 GAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQ 363
GAKGS VN ISC LGQ LEG+R +M+SG+TLPSF P+E AGG+V GRF+TGI+
Sbjct: 952 GAKGSVVNANLISCNLGQQVLEGRRVPVMISGKTLPSFKPFETKLVAGGYVSGRFLTGIK 1011
Query: 364 PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRD-SDLSLIQVLY 422
PQE++FH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL YD +VRD +D +L+Q LY
Sbjct: 1012 PQEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKAEYDNSVRDTTDGTLVQFLY 1071
Query: 423 GEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPN 482
GEDGLD+TK+++L D FSFL N I S + +G
Sbjct: 1072 GEDGLDITKQKHLQD--FSFLAQNYLSILS-----------------------QVNGMDE 1106
Query: 483 FIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKA-CPQPLISTFQPDAHFGSISENLAD 541
F K ++ +W + A KK +K + P+++ + P A+FGS SE+ A
Sbjct: 1107 F------NKVNSEVAAKW---NKSAIKKVKKTGQVDAKDPVLAHYHPGANFGSTSESFAT 1157
Query: 542 SVVKYTKGRTDASHVDK-----------FYDMIFYKNLLSLANPGENVGVLAAQSIGEPS 590
++ +Y K D DK F ++ K + S+ +PGE VG++A QSIGEPS
Sbjct: 1158 ALKEYEKKNPDKLLKDKGQGIDGISKKDFEHIMNMKYMRSVVDPGEAVGIVAGQSIGEPS 1217
Query: 591 TQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLA 650
TQMTLNTFH AG NVTLGIPRLREI+M A+ I TP+M F + +++ A
Sbjct: 1218 TQMTLNTFHLAGHSAKNVTLGIPRLREIVMTASTQILTPTMSANFYEQVSTKDREL--FA 1275
Query: 651 KSMTRITMADVLEKVKIKEWLEISPEPHMN---YQMKFCFIPAHMYRDKTSVKPSKIIDH 707
K ++R+T+A+V++K+ + E IS ++ Y + F PA Y + ++K +++
Sbjct: 1276 KGISRLTLAEVVDKLSVHE--RISNRGNVKAKVYDIHINFFPAEEYTQEYAIKVQDVLET 1333
Query: 708 FERKFLKELEVAIAKRAAQGLKNMNIEQSRDQM---EDDVEDDEGEGAEGAGAALGRVDV 764
E++F+ +L K LK E+S + ++ G EG GR
Sbjct: 1334 LEKRFVPKL----VKLTRAELKKRTSEKSLSDFSAAQPEIGASVGVVEEGPRNTEGREAA 1389
Query: 765 SSDEERDEEDAVQ-SHKKVNQEEDNDFEEP-EDEERMSERE---------------EDDN 807
+ D+E +++D + + N+ +E P ED++ + R+ +N
Sbjct: 1390 NDDDEDEDQDDAKRARSSQNRSNQVSYEAPDEDDQDIIRRQDSSELDSEDEDESSENKEN 1449
Query: 808 TSNIGERFKIEFRDSTNVFVKD------VVNQHNIVHKYSYDKKNHMWC----------- 850
G+ +E +D+++V +D + ++H V ++ +D K C
Sbjct: 1450 RPASGDE-DVEMKDASDVEDEDKEREESIRDKHAEVTRFKFDPKKGTSCIIQLQYDVSTP 1508
Query: 851 KLLFLP--------------------SNLFEEKESKHLLKTDGINVNFISQYRHLLDLNK 890
KLL LP + + EE+++ + TDG+N+ + Y+H+++++
Sbjct: 1509 KLLLLPLVENATRAAVIQFIPGLGSCTYVPEERDTPAHVLTDGVNLLAMRDYQHIINMHT 1568
Query: 891 LYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNR 950
LY N IH+M + YG+EAA I+RE+ +VF + I VD RHL+L+ D MT SG + NR
Sbjct: 1569 LYSNSIHHMLTLYGVEAARASIVREMDSVFKSHSIAVDNRHLNLIGDVMTQSGGFRPFNR 1628
Query: 951 NGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
GI + + S KM+FE + +R A ++ D+L APS+R+++G+ GTG F +
Sbjct: 1629 MGIVKDSTSPFMKMSFETTVRFLRDAVLERDWDNLAAPSSRIVMGRVSTVGTGSFDV 1685
>gi|326426598|gb|EGD72168.1| Crp22 [Salpingoeca sp. ATCC 50818]
Length = 1617
Score = 578 bits (1490), Expect = e-162, Method: Compositional matrix adjust.
Identities = 386/1064 (36%), Positives = 561/1064 (52%), Gaps = 164/1064 (15%)
Query: 39 IQDHVISGAKLSLRDTFLTRAEYMNLVYQAL--CILNTEIRTLPPTIWKPMPLWTGKQVL 96
IQDHVI+G K+ RDTF + Y LVY AL + I LPP + KP LW+GKQV+
Sbjct: 616 IQDHVIAGTKICCRDTFYDKDHYQALVYAALEDRVDTCGIELLPPCMIKPRKLWSGKQVI 675
Query: 97 STVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDK 156
STV+ N+T + KV G +G K S + ++ V +R ELL G+LDK
Sbjct: 676 STVMKNVT-RGKV----GVYYTGSTKIKNSWSKCSTELEG--ESTVIVRDDELLCGLLDK 728
Query: 157 KQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKR 216
Q G++ LVH ++THG A LL+ KLFT++L+ G TL + D+L+ +E D +R
Sbjct: 729 AQCGASNNSLVHVYFETHGGRVAGDLLTAFGKLFTMWLKYHGATLSIDDLLLTKEADIRR 788
Query: 217 TKIINKARRLGTEAACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVT 276
K I ++ G +AA + TD ++ S + + + +D +KV
Sbjct: 789 RKSIEQSEASGPQAAAKFVKQEDPTDIPLLRSNIATILRDAVEHKG-LDSTMAGAANKVQ 847
Query: 277 NNINQVC---LPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMV 333
+ + C +P+GL++ FP NN Q +V+SGAKGS VN QIS +LGQ LEG+R +M+
Sbjct: 848 SEV--ACSKNIPDGLLKQFPDNNFQLIVQSGAKGSNVNATQISGMLGQQMLEGRRVPVMM 905
Query: 334 SGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQR 393
SG+TLPSF ++ S RAGG + RF+TG++PQE+FFHCMAGREGL+DTAVKTSRSGYLQR
Sbjct: 906 SGKTLPSFAAFDPSLRAGGLITDRFLTGLRPQEYFFHCMAGREGLVDTAVKTSRSGYLQR 965
Query: 394 CLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSY 453
CL+KHLE L V YDMTVRDSD S++Q YGEDG+DVTK L + F F DN Y
Sbjct: 966 CLIKHLEDLKVQYDMTVRDSDGSVVQFRYGEDGIDVTKAAQLGN--FKFFADN------Y 1017
Query: 454 KVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRK 513
+ +LN L +G+ F +K + +++ + D+
Sbjct: 1018 QGLLNRL----------------CAGRIADAFPGKLSKVAIRQMKKALKHPDEH------ 1055
Query: 514 KFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYD----------MI 563
P+++T +PD H G ISE L ++++Y + V KF D ++
Sbjct: 1056 ------DPVLTTLRPDTHLGCISEKLYKAMIEYADKHKNDVLVQKFKDTELSPARFKSVV 1109
Query: 564 FYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMAT 623
+ K+ +LA+PGE VG+ AAQ++GEPSTQMTLNTFHFAGRGD+NVTLGIPRLREI+M A+
Sbjct: 1110 YMKSHHALADPGEAVGICAAQAVGEPSTQMTLNTFHFAGRGDVNVTLGIPRLREIIMTAS 1169
Query: 624 KAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLE--ISPEPHMNY 681
KA KTP +++P LP +E +A +LA S++ + + DVL+ V WL S E Y
Sbjct: 1170 KAAKTPLIKVPILPVENAVE-QAEKLAASLSPVLLKDVLKGVDCTTWLSRFKSGEFVRYY 1228
Query: 682 QMKFCFIPAHMYRDKTSVKPSKIIDHFE---------------RKFLKELEVAIAKRAAQ 726
++ F FI +Y+++ ++ ++ E ++F + VA+ K A
Sbjct: 1229 RLHFKFIDTEVYQERCAISAEELFTRLEKTVFPKLPRIAGTWYKRFAQADTVAVTK--AS 1286
Query: 727 GL--------------KNMNIEQSRDQMEDDVEDDEG----------EGAEGAGAALGRV 762
GL R + D+V++ G E E + +
Sbjct: 1287 GLDVTPKDADADDDDDNKAGGYDERKRARDNVDETNGDEDVDSSESEEEEEDPESGTDQA 1346
Query: 763 DVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNT-------SNIGERF 815
+SSD++ D KV+ E EDE M R + + T S+ G+R
Sbjct: 1347 HLSSDDDEDTRRPGPRKVKVD-------EGLEDEAIMDIRADAEATFATPDPDSDKGKRA 1399
Query: 816 KIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLF--------LPSNLFEEKESKH 867
K +V+ Y+YD+ W L +P E E+
Sbjct: 1400 A-----ELKARCKPIVD-------YNYDEDRGEWATLTLRVSAEQPIVPFITMLESEAHK 1447
Query: 868 LL--KTDGI-----------------------NVNFISQYRHLLDLNKLYVNDIHYMAST 902
L+ +T GI N+ + ++ +LDLN L ND++ M
Sbjct: 1448 LIIRQTKGIRRCMLGKSSEEQDTPDVFMVEGLNMRVVREHADILDLNHLECNDVYAMLEA 1507
Query: 903 YGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQK 962
YGIEAA IIRE++ VF VYGI V+ RHLSL+ADYM+ GTY MNR +R N S +
Sbjct: 1508 YGIEAARDSIIRELRAVFNVYGITVNHRHLSLIADYMSFEGTYRGMNRITMRSNVSPFSQ 1567
Query: 963 MTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
M+FE ++ +++A++ G + LR+ S+R+++G+ GTG F +
Sbjct: 1568 MSFETTVDFLKRAALGGAHEPLRSHSSRLVVGKLTTTGTGSFDI 1611
>gi|303317604|ref|XP_003068804.1| DNA-directed RNA polymerase II largest subunit, putative
[Coccidioides posadasii C735 delta SOWgp]
gi|240108485|gb|EER26659.1| DNA-directed RNA polymerase II largest subunit, putative
[Coccidioides posadasii C735 delta SOWgp]
Length = 1690
Score = 576 bits (1485), Expect = e-161, Method: Compositional matrix adjust.
Identities = 378/1072 (35%), Positives = 576/1072 (53%), Gaps = 127/1072 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA L + QYLV G PL GLIQDH+ G + RD+ +Y L+Y L
Sbjct: 663 RAEAMQLADTDHQYLVATSGKPLRGLIQDHISMGTWFTSRDSLFDEEDYHQLLYSCLRPE 722
Query: 73 NT-----EIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
N+ +I +PPTI KP P WTGKQ++ST++ N+TP+++ + S D+ + G
Sbjct: 723 NSHTVSEKIELMPPTILKPKPRWTGKQIISTILKNITPENRAGLNLIGKSSTPGDRWEIG 782
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
S + V ++ GELL GILDK Q G + GL+H+V + G A L+ L
Sbjct: 783 SEE---------GKVIVKDGELLCGILDKAQLGPSAGGLIHSVHEVFGHVVAGKLIGILG 833
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDP-EII 246
+L T +LQ FT G+ D+ + ++ D +R K + + LG E A + LD P E
Sbjct: 834 RLLTRFLQMRAFTCGMDDLRLTKKGDEERKKQLKRGDNLGHEVALQYV--TLDESPVEDK 891
Query: 247 SSQLQEAYASI---PQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVES 303
++LQ + + +A +D + S ++++I CLP GL +PFP N +Q M S
Sbjct: 892 ETELQRRLEDVLRDDEKQAGLDSMFNSRTAGLSSDITAACLPSGLEKPFPWNQMQAMTVS 951
Query: 304 GAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQ 363
GAKGS VN ISC LGQ LEG+R +M+SG+TLPSF P+E AGG+V GRF+TGI+
Sbjct: 952 GAKGSVVNANLISCNLGQQVLEGRRVPVMISGKTLPSFKPFETKLVAGGYVSGRFLTGIK 1011
Query: 364 PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRD-SDLSLIQVLY 422
PQE++FH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL YD +VRD +D +L+Q LY
Sbjct: 1012 PQEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKAEYDNSVRDTTDGTLVQFLY 1071
Query: 423 GEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPN 482
GEDGLD+TK+++L D FSFL N I S + +G
Sbjct: 1072 GEDGLDITKQKHLQD--FSFLAQNYLSILS-----------------------QVNGMDE 1106
Query: 483 FIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKA-CPQPLISTFQPDAHFGSISENLAD 541
F K ++ +W + A KK ++ + P+++ + P A+FGS SE+ A
Sbjct: 1107 F------NKVHSEVAAKW---NKSAIKKVKRTGQVDAKDPVLAHYHPGANFGSTSESFAT 1157
Query: 542 SVVKYTKGRTDASHVDK-----------FYDMIFYKNLLSLANPGENVGVLAAQSIGEPS 590
++ +Y K D DK F ++ K + S+ +PGE VG++A QSIGEPS
Sbjct: 1158 ALKEYEKKNPDKLLKDKGQGIDGISKKDFEHIMNMKYMRSVVDPGEAVGIVAGQSIGEPS 1217
Query: 591 TQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLA 650
TQMTLNTFH AG NVTLGIPRLREI+M A+ I TP+M F + +++ A
Sbjct: 1218 TQMTLNTFHLAGHSAKNVTLGIPRLREIVMTASTQILTPTMSANFYEQVSTKDREL--FA 1275
Query: 651 KSMTRITMADVLEKVKIKEWLEISPEPHMN---YQMKFCFIPAHMYRDKTSVKPSKIIDH 707
K ++R+T+A+V++K+ + E IS ++ Y + F PA Y + ++K +++
Sbjct: 1276 KGISRLTLAEVVDKLSVHE--RISNRGNVKAKVYDIHINFFPAEEYTQEYAIKVQDVLET 1333
Query: 708 FERKFLKEL----EVAIAKRAAQ-GLKNMNIEQ-----SRDQMEDDVEDDEGEGAEGAGA 757
E++F+ +L + KR ++ L + + Q S +E+ + EG A
Sbjct: 1334 LEKRFVPKLVKLTRAELKKRTSEKSLSDFSAAQPEIGASVGVVEEGPRNTEGREAANDDD 1393
Query: 758 ALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNTSNIGER--- 814
D + + + Q + E+D D +D + +ED+++ N +R
Sbjct: 1394 EDEDQDDAKRARSSQNRSNQVSYEAPDEDDQDIIRRQDSSELDSEDEDESSENKEKRPAS 1453
Query: 815 --FKIEFRDSTNVFVKD------VVNQHNIVHKYSYDKKNHMWC-----------KLLFL 855
+E +D+++V +D + ++H V ++ +D K C KLL L
Sbjct: 1454 GDEDVEMKDASDVEDEDKEREESIRDKHAEVTRFKFDPKKGTSCIIQLQYDVSTPKLLLL 1513
Query: 856 P--------------------SNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVND 895
P + + EE+++ + TDG+N+ + Y+H+++++ LY N
Sbjct: 1514 PLVENATRAAVIQFIPGLGSCTYVPEERDTPAHILTDGVNLLAMRDYQHIINMHTLYSNS 1573
Query: 896 IHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-R 954
IH+M + YG+EAA I+RE+ +VF + I VD RHL+L+ D MT SG + NR GI +
Sbjct: 1574 IHHMLTLYGVEAARASIVREMDSVFKSHSIAVDNRHLNLIGDVMTQSGGFRPFNRMGIVK 1633
Query: 955 LNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+ S KM+FE + +R A ++ D+L APS+R+++G+ GTG F +
Sbjct: 1634 DSTSPFMKMSFETTVRFLRDAVLERDWDNLAAPSSRIVMGRVSTVGTGSFDV 1685
>gi|449299692|gb|EMC95705.1| hypothetical protein BAUCODRAFT_34468 [Baudoinia compniacensis UAMH
10762]
Length = 1744
Score = 576 bits (1485), Expect = e-161, Method: Compositional matrix adjust.
Identities = 380/1099 (34%), Positives = 570/1099 (51%), Gaps = 143/1099 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL--- 69
+AEA + + QYL G+PL GLIQDH+ G L+ RD F RA+YM L+Y A+
Sbjct: 683 RAEALSIADTDHQYLSSTAGNPLRGLIQDHISMGVWLTNRDMFFDRADYMQLLYAAIRPE 742
Query: 70 ---CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQF 126
C +I T+PP IWKP PLWTGKQV++TV+ N++P+ G +S +
Sbjct: 743 SGHCA-RKQIETVPPAIWKPKPLWTGKQVVTTVLKNISPEGS----EGMTMSATC---KT 794
Query: 127 GSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCL 186
+G A + + ++ G + G+LDK Q G + G VHAV++ +G A LLS L
Sbjct: 795 DPRLWGEAGAREEGTLLVKDGYVCHGVLDKNQIGPSAGGFVHAVYELYGHVTAGRLLSIL 854
Query: 187 AKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLP---LDTDP 243
+L T F+ GV D++ +E + KR + + A +G E A +GL + D
Sbjct: 855 GRLLTRLENMRAFSCGVEDLVFTREGEEKRRQALADAETVGFEVAKKYVGLAEQNVGRDN 914
Query: 244 EIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVES 303
+ +L++ + R +D+ S +++ + CLP L++PFPAN +Q M S
Sbjct: 915 RELRVRLEDVLRDDAKQRG-LDQLTNSATSVLSSAVTNACLPAALVKPFPANQMQTMTSS 973
Query: 304 GAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQ 363
GAKGS VN QISC LGQ LEG+R +MVSG+TLP F P+E S RAGG+V RF+TG++
Sbjct: 974 GAKGSKVNANQISCNLGQQILEGRRVPVMVSGKTLPCFKPFESSVRAGGYVVDRFLTGVR 1033
Query: 364 PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYG 423
PQEFFFH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL + YD +VRD+D S++Q LYG
Sbjct: 1034 PQEFFFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKIEYDTSVRDADGSIVQFLYG 1093
Query: 424 EDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNF 483
EDGLDV K ++L D +F E+++ + F+S G
Sbjct: 1094 EDGLDVAKAKFLGDFKFE-AENHVSF-------------------------FRSLGD--- 1124
Query: 484 IFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFK-ACPQPLISTFQPDAHFGSISENLADS 542
F L ++ + A +KYRK A P + ++P GS SE +
Sbjct: 1125 ----EEGGFERVLSDEAALYNKNAIRKYRKTGDLAAADPALEVYRPSRFAGSTSEKVYSE 1180
Query: 543 VVKYTKGRTDASHVDK------------FYDMIFYKNLLSLANPGENVGVLAAQSIGEPS 590
+Y D DK F ++ + L S+ GE VGV+A QS+GEPS
Sbjct: 1181 AKQYMDENPDKLIKDKKAGIEGRVTRKAFQRILDMRYLRSVVEAGEAVGVVAGQSVGEPS 1240
Query: 591 TQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLA 650
TQMTLNTFH AG NVTLGIPRLREI+M A K TP+M + ++ E A R A
Sbjct: 1241 TQMTLNTFHLAGHAAKNVTLGIPRLREIVMTAAKQNATPTMTLRLNEEIAVQE--AKRFA 1298
Query: 651 KSMTRITMADVLEKVKIKEWLE--ISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHF 708
K +++++MA++L+KV + E E ++ Y+++ F PA Y + ++ ++
Sbjct: 1299 KGISKLSMAEILDKVTVTEKTEKGVAYSEAKKYEVRLDFFPAAEYTKEYAITIDDVVATI 1358
Query: 709 ERKFLKELEV----AIAKRA-AQGLKNM-------NIEQSRDQMEDDVEDDEGE------ 750
E +FL L+V + KR + LKN ++ +S +E EGE
Sbjct: 1359 EHRFLPRLQVLTRKELKKRGDEKSLKNAVRSDAMPDVGKSAGMVEQQSSRPEGEREGGDD 1418
Query: 751 --------GAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEE----- 797
A A ++ + D+E+ V + + NQ E + EE E E+
Sbjct: 1419 DSDGEGDDDATRDKAKSNKMQAGYEAFEDDEENVLAAR--NQREGSPIEEDEMEDEAYGG 1476
Query: 798 --RMSEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC----- 850
R ++ + R K+ ++ N D + N V ++++D + C
Sbjct: 1477 SPRSADESSEGEGEEDAPR-KLAAKERENRIKSD--KKSNDVTRFAFDDEAGESCTFTLE 1533
Query: 851 ------KLLFLP------------------SNLFEE---KESKHL-----LKTDGINVNF 878
K+L L + + +E K+SK + L G+N+
Sbjct: 1534 YDSDAAKILMLALVEQAARHAAIQSVPGISTAMVDEVAMKDSKEVPAVPILALSGVNIPA 1593
Query: 879 ISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADY 938
+ +Y+H+++ ++LY N ++ + YG+EAA I+ E+++VF +GI V+ RHL+L+ADY
Sbjct: 1594 MWEYQHVINPHRLYTNSVYDILRHYGVEAARNAIVLELQSVFGGHGISVNARHLTLIADY 1653
Query: 939 MTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECR 998
MT SG Y A NR G R N S KM+FE + +R A ++G D L PSAR++ G+ +
Sbjct: 1654 MTRSGDYQAFNRMGYRGNASPFMKMSFETTVSFLRDAVLEGDWDDLNNPSARIVTGRLSK 1713
Query: 999 QGTGLFQLRNREKKKKKVE 1017
GTG F + + + ++K++
Sbjct: 1714 VGTGGFDIFTKLQAREKLQ 1732
>gi|326480372|gb|EGE04382.1| DNA-directed RNA polymerase I subunit [Trichophyton equinum CBS
127.97]
Length = 1680
Score = 576 bits (1484), Expect = e-161, Method: Compositional matrix adjust.
Identities = 392/1080 (36%), Positives = 571/1080 (52%), Gaps = 144/1080 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA L + QYLV G PL GLIQDH+ G L+ RD+F +Y L+Y L
Sbjct: 654 RAEAMQLADTDHQYLVATSGKPLRGLIQDHLSMGVWLTCRDSFFDEDDYHQLLYSCLRPE 713
Query: 73 NT-----EIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
N+ +I +PP I+KP PLWTGKQ++STV+ N+TP ++ + LD K
Sbjct: 714 NSHTVSDKIWLMPPAIFKPQPLWTGKQIISTVLKNITPDNRAGLN--------LDSKS-- 763
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
ST + VT+R GEL+SGILDK Q G T GL+H++ + +G A L+ L
Sbjct: 764 STPGDRWGDKAEGEVTVRDGELISGILDKSQLGPTVGGLIHSIHEVYGHIVAGKLIGILG 823
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPL----DTDP 243
+L T L FT G+ D+ + +E + KR ++I +A LG E + + L D D
Sbjct: 824 RLLTKVLHMRAFTCGMDDLRLTEEGNAKRKELIQQADGLGKEISLKYVTLDENKVEDEDT 883
Query: 244 EIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVES 303
E+ +L+E + A +D YKS ++++ I + CLP GL +PFP NN+Q M S
Sbjct: 884 EL-QRRLEEVLRDDDK-HAGLDAMYKSRAGELSSEITKACLPSGLEKPFPFNNMQTMTVS 941
Query: 304 GAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQ 363
GAKGS VN ISC LGQ LEG+R +M+SG+TLPSF P+E AGG+V GRF+TGI+
Sbjct: 942 GAKGSMVNANLISCNLGQQVLEGRRVPVMISGKTLPSFQPFETKIGAGGYVFGRFLTGIK 1001
Query: 364 PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRD-SDLSLIQVLY 422
P E++FH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL V YD +VRD SD S++Q LY
Sbjct: 1002 PHEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKVEYDTSVRDTSDGSIVQFLY 1061
Query: 423 GEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPN 482
GEDGLD+TK+++L FSFL N I S +N
Sbjct: 1062 GEDGLDITKQKHL--DSFSFLAQNYMSIVSQVNGVN------------------------ 1095
Query: 483 FIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFK-ACPQPLISTFQPDAHFGSISENLAD 541
+K + W + A KK +K + P ++ F P A++GS SE +
Sbjct: 1096 -----DSSKIHSEEASNWSK---AALKKIKKTGQIEAKDPALAHFPPGANYGSTSEKFSS 1147
Query: 542 SVVKYTKGRTDASHVDK-----------FYDMIFYKNLLSLANPGENVGVLAAQSIGEPS 590
++ KY K D DK F M+ K + S+ +PGE +G++A QS+GEPS
Sbjct: 1148 ALKKYLKSNPDNLLKDKSTGEGEITKKAFTTMMNMKYMKSVIDPGEAIGIVAGQSVGEPS 1207
Query: 591 TQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLA 650
TQMTLNTFH AG NVTLGIPRLREI+M A+ I TP+M + + EK A A
Sbjct: 1208 TQMTLNTFHLAGHAAKNVTLGIPRLREIVMTASSHIMTPTMTLKL--NKQTDEKTARLFA 1265
Query: 651 KSMTRITMADVLEKVKIKEWLEISPEPHMN-YQMKFCFIPAHMYRDKTSVKPSKIIDHFE 709
K++T++T+A+V++K+K++E + Y ++ F P Y + +++ + ++ E
Sbjct: 1266 KTITKLTLAEVVDKLKVRERVASQGSAKAKIYDIQIDFFPPEAYCAEYAIQVNDVLRTLE 1325
Query: 710 RKFLKEL----EVAIAKR----------AAQ---GLKNMNIEQSR--------------- 737
KF+ L E + KR AAQ G +E++R
Sbjct: 1326 EKFIPRLVKLTEAELKKRTSEKSLSSPSAAQPEIGASVGVVEEARREGGDNDEDDDEDLD 1385
Query: 738 -DQMEDDVEDDEGEGA-----EGAGAALGRVDVSSDEERDEEDAVQSHKKV---NQEEDN 788
+ ++ G+ + EG + R D + D E D+ED K V N + D
Sbjct: 1386 DAKRASSSRNNAGQASYEAPDEGEQEIIRRQD-TPDLESDDEDTDDKQKPVPVDNGDSDT 1444
Query: 789 DFEEPEDEERMSEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHM 848
D E+P S+ + N + E + ++ T F ++ N + YD
Sbjct: 1445 DMEDPGP----SKSRKLANNRDRAEALRGKYPALTQ-FKFNLDNGSLCTIQLQYDISTP- 1498
Query: 849 WCKLLFLP------------------SNLF---EEKESKHLLKTDGINVNFISQYRHLLD 887
KLL LP S + ++ E +H++ T+G+N+ + Y+ ++D
Sbjct: 1499 --KLLLLPLVENAARTSVIQFIPGLGSCAYIPADKGEPEHVV-TEGVNLLAMRDYQDIID 1555
Query: 888 LNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVA 947
+ +Y N + +M S YG+EAA I+ EV VF +GI+VD RHL+L+AD MT +G Y A
Sbjct: 1556 PHSIYSNSVSHMLSLYGVEAARATIVSEVGAVFEGHGIKVDNRHLTLIADVMTQTGGYRA 1615
Query: 948 MNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
NR GI + + S + KM+FE + +R A ++ D+L PS+R+++G+ GTG F +
Sbjct: 1616 FNRMGIVKDSTSPLMKMSFETTVRFLRDAVLERDWDNLNGPSSRIVVGRVGTVGTGAFDV 1675
>gi|241949841|ref|XP_002417643.1| DNA-directed RNA polymerase I 190 kda polypeptide largest subunit,
putative [Candida dubliniensis CD36]
gi|223640981|emb|CAX45330.1| DNA-directed RNA polymerase I 190 kda polypeptide largest subunit,
putative [Candida dubliniensis CD36]
Length = 1656
Score = 576 bits (1484), Expect = e-161, Method: Compositional matrix adjust.
Identities = 373/1078 (34%), Positives = 567/1078 (52%), Gaps = 131/1078 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA L N +QYL P GSPL GLIQDH+ +G L+ +DTF R Y L+Y CI
Sbjct: 619 RAEALNLANTDNQYLTPTSGSPLRGLIQDHISAGVWLTNKDTFFNRETYQQLIYG--CIR 676
Query: 73 -------NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQ 125
I T+PP I+KP LWTGKQV++TV++N+ P + + ++ K +
Sbjct: 677 PEDGHTSKNRIVTVPPAIYKPEMLWTGKQVITTVLLNIKPDNVPGVN-------LISKNK 729
Query: 126 FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSC 185
S + + + V ++GEL+ GILDK Q+G++Q+G+VH++ + +G A LS
Sbjct: 730 IKSDYWS--ESSTENEVIFKNGELVCGILDKSQYGASQFGIVHSLHEVYGPTVAGKALSV 787
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDT---D 242
L +LFT Y+ FT G+ D+ + E + R I+ ++ +G AA L DT +
Sbjct: 788 LGRLFTNYIMMTAFTCGMDDLRLTDEGNTWRKDILKQSVDIGRVAATEVTNLDEDTKNNN 847
Query: 243 PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
E++ +L+E + +D +S ++ +T+ + C+P+G ++ FP N++Q M
Sbjct: 848 KELLR-RLEEILRDDNKL-GILDAITQSKVNAITSQVVSKCVPDGTMKRFPYNSMQAMAL 905
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
SGAKGS VN QI CLLGQ LEG+R +MVSG+TLPSF P+E RAGG++ RF +GI
Sbjct: 906 SGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPFETDARAGGYIKQRFYSGI 965
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
+PQE++FHCMAGREGLIDTAVKTSRSGYLQRCL K LEG+ V YD +VRD+D +LIQ LY
Sbjct: 966 RPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSVRDADGTLIQFLY 1025
Query: 423 GEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTF-KSSGKP 481
G D +D TK+ ++ QF F DN + + ++ + LA+ KS K
Sbjct: 1026 GGDAVDTTKQSHMN--QFKFCVDNYDALLTKYNPGDMTENIDTDLAMSYSKKVRKSLKKQ 1083
Query: 482 NFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLAD 541
N I PH +Q + D P+++ + P + GS+SE +
Sbjct: 1084 NDI--PH--------YDQVIKYD----------------PVLNVYNPAKYLGSVSEKFQE 1117
Query: 542 SVVKY--------TKGRTDASHV-----DKFYDMIFYKNLLSLANPGENVGVLAAQSIGE 588
+ Y + + +A KF ++ K + SL NPGE VG++A+QSIGE
Sbjct: 1118 KLDTYVSKNPTVFAQSKEEAKSTGKITEKKFRALMQLKYMRSLINPGEAVGIIASQSIGE 1177
Query: 589 PSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANR 648
PSTQMTLNTFHFAG G NVTLGIPR+REI+M A+ +IKTP M +P L D+ +++A+
Sbjct: 1178 PSTQMTLNTFHFAGHGAANVTLGIPRMREIIMTASASIKTPQMTLPILADVN--DEQADA 1235
Query: 649 LAKSMTRITMADVLEKVKIKEWL--EISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIID 706
KS+ R+ M++ ++KV + E ++ +Y + F Y + + ++ D
Sbjct: 1236 FCKSVARVVMSEFVDKVVVTETTSQDVDGSNSRSYVIGLKFYTKEEYETEYDISQEQLED 1295
Query: 707 HFERKFLKELEVAIAKRAAQGLK-NMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRVDVS 765
KFL LE I K + K + + + D+E G+ E D
Sbjct: 1296 VITSKFLHALESQIVKEVKKQKKPDYMPTVGKSAGKTDMETVSGKIKEIDNGD--DDDDD 1353
Query: 766 SDEERDEEDAVQSHKKVNQE------EDNDFEEPEDEERMSEREEDDNTS---------- 809
+E ++ D Q+ + V Q+ +D++ E + E S+ E D + S
Sbjct: 1354 DNEIDEDHDEEQAKQNVKQQVSYEGPDDDEIETMKKAEETSDEEMDGDNSSSSDESESDS 1413
Query: 810 ------NIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC------------K 851
++ + K E S +V+ HN+V ++++D + WC K
Sbjct: 1414 DNDEDVDMDKPSKPELSRSAKDRQSEVIASHNMVTQFNFDDEVGEWCEFKLELNGNETQK 1473
Query: 852 LLFLPSNLFEE-----------------------KESKHLLKTDGINVNFISQYRHLLDL 888
LL + N+ E+ K K +L T+G+N + +++
Sbjct: 1474 LLMV--NIVEDLLRKVVVREIPHIGRCIRPEPDAKTGKRILTTEGVNFKAMWDQDDFINV 1531
Query: 889 NKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAM 948
N + ND++ + TYG+EAA I+ E+ VF YGI V RHL L+AD MT GTY+A
Sbjct: 1532 NGITSNDVYAVLKTYGVEAARNTIVNEIYRVFDTYGISVSSRHLDLIADMMTREGTYLAF 1591
Query: 949 NRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
NR GI + S KM++E + + +A + G + L +PSA++++G+ GTG F +
Sbjct: 1592 NRQGIDSSTSAFMKMSYETTCQFLTKAVLDGDREELESPSAKIVMGKLSNVGTGSFDV 1649
>gi|320038801|gb|EFW20736.1| DNA-directed RNA polymerase 1 subunit RPA1 [Coccidioides posadasii
str. Silveira]
Length = 1690
Score = 575 bits (1481), Expect = e-161, Method: Compositional matrix adjust.
Identities = 378/1072 (35%), Positives = 576/1072 (53%), Gaps = 127/1072 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA L + QYLV G PL GLIQDH+ G + RD+ +Y L+Y L
Sbjct: 663 RAEAMQLADTDHQYLVATSGKPLRGLIQDHISMGTWFTSRDSLFDEEDYHQLLYSCLRPE 722
Query: 73 NT-----EIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
N+ +I +PPTI KP P WTGKQ++ST++ N+TP+++ + S D+ + G
Sbjct: 723 NSHTVSEKIELMPPTILKPKPRWTGKQIISTILKNITPENRAGLNLIGKSSTPGDRWEIG 782
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
S + V ++ GELL GILDK Q G + GL+H+V + G A L+ L
Sbjct: 783 SEE---------GKVIVKDGELLCGILDKAQLGPSAGGLIHSVHEVFGHVVAGKLIGILG 833
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDP-EII 246
+L T +LQ FT G+ D+ + ++ D +R K + + LG E A + LD P E
Sbjct: 834 RLLTRFLQMRAFTCGMDDLRLTKKGDEERKKQLKRGDNLGHEVALQYV--TLDESPVEDK 891
Query: 247 SSQLQEAYASI---PQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVES 303
++LQ + + +A +D + S ++++I CLP GL +PFP N +Q M S
Sbjct: 892 ETELQRRLEDVLRDDEKQAGLDSMFNSRTAGLSSDITAACLPSGLEKPFPWNQMQAMTVS 951
Query: 304 GAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQ 363
GAKGS VN ISC LGQ LEG+R +M+SG+TLPSF P+E AGG+V GRF+TGI+
Sbjct: 952 GAKGSVVNANLISCNLGQQVLEGRRVPVMISGKTLPSFKPFETKLVAGGYVSGRFLTGIK 1011
Query: 364 PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRD-SDLSLIQVLY 422
PQE++FH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL YD +VRD +D +L+Q LY
Sbjct: 1012 PQEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKAEYDNSVRDTTDGTLVQFLY 1071
Query: 423 GEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPN 482
GEDGLD+TK+++L D FSFL N I S + +G
Sbjct: 1072 GEDGLDITKQKHLQD--FSFLAQNYLSILS-----------------------QVNGMDE 1106
Query: 483 FIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKA-CPQPLISTFQPDAHFGSISENLAD 541
F K ++ +W + A KK ++ + P+++ + P A+FGS SE+ A
Sbjct: 1107 F------NKVHSEVAAKW---NKSAIKKVKRTGQVDAKDPVLAHYHPGANFGSTSESFAT 1157
Query: 542 SVVKYTKGRTDASHVDK-----------FYDMIFYKNLLSLANPGENVGVLAAQSIGEPS 590
++ +Y K D DK F ++ K + S+ +PGE VG++A QSIGEPS
Sbjct: 1158 ALKEYEKKNPDKLLKDKGQGIDGISKKDFEHIMNMKYMRSVVDPGEAVGIVAGQSIGEPS 1217
Query: 591 TQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLA 650
TQMTLNTFH AG NVTLGIPRLREI+M A+ I TP+M F + +++ A
Sbjct: 1218 TQMTLNTFHLAGHSAKNVTLGIPRLREIVMTASTQILTPTMSANFYEQVSTKDREL--FA 1275
Query: 651 KSMTRITMADVLEKVKIKEWLEISPEPHMN---YQMKFCFIPAHMYRDKTSVKPSKIIDH 707
K ++R+T+A+V++K+ + E IS ++ Y + F PA Y + ++K +++
Sbjct: 1276 KGISRLTLAEVVDKLSVHE--RISNRGNVKAKVYDIHINFFPAEEYTQEYAIKVQDVLET 1333
Query: 708 FERKFLKEL----EVAIAKRAAQ-GLKNMNIEQ-----SRDQMEDDVEDDEGEGAEGAGA 757
E++F+ +L + KR ++ L + + Q S +E+ + EG A
Sbjct: 1334 LEKRFVPKLVKLTRAELKKRTSEKSLSDFSAAQPEIGASVGVVEEGPRNTEGREAANDDD 1393
Query: 758 ALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNTSNIGER--- 814
D + + + Q + E+D D +D + +ED+++ N +R
Sbjct: 1394 EDEDQDDAKRARSSQNRSNQVSYEAPDEDDQDIIRRQDSSELDSEDEDESSENKEKRPAS 1453
Query: 815 --FKIEFRDSTNVFVKD------VVNQHNIVHKYSYDKKNHMWC-----------KLLFL 855
+E +D+++V +D + ++H V ++ +D K C KLL L
Sbjct: 1454 GDEDVEMKDASDVEDEDKEREESIRDKHAEVTRFKFDPKKGTSCIIQLQYDVSTPKLLLL 1513
Query: 856 P--------------------SNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVND 895
P + + EE+++ + TDG+N+ + Y+H+++++ LY N
Sbjct: 1514 PLVENATRAAVIQFIPGLGSCTYVPEERDTPAHILTDGVNLLAMRDYQHIINMHTLYSNS 1573
Query: 896 IHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-R 954
IH+M + YG+EAA I+RE+ +VF + I VD RHL+L+ D MT SG + NR GI +
Sbjct: 1574 IHHMLTLYGVEAARASIVREMDSVFKSHSIAVDNRHLNLIGDVMTQSGGFRPFNRMGIVK 1633
Query: 955 LNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+ S KM+FE + +R A ++ D+L APS+R+++G+ GTG F +
Sbjct: 1634 DSTSPFMKMSFETTVRFLRDAVLERDWDNLAAPSSRIVMGRVNTVGTGSFDV 1685
>gi|302799457|ref|XP_002981487.1| hypothetical protein SELMODRAFT_233747 [Selaginella moellendorffii]
gi|300150653|gb|EFJ17302.1| hypothetical protein SELMODRAFT_233747 [Selaginella moellendorffii]
Length = 1578
Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust.
Identities = 391/1074 (36%), Positives = 563/1074 (52%), Gaps = 171/1074 (15%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA ++N + QY+VP G P+ GLIQDH+IS L+ +DTFLT+ EY LVY A +
Sbjct: 587 RAEAYLIVNANQQYIVPTSGEPIRGLIQDHIISATLLTKKDTFLTKEEYHQLVYSACVPM 646
Query: 73 NT-------------------EIRTLPPTIWKPMPLWTGKQVLSTVIINLT-PKDKVIIR 112
T I T+PP IWKP LW+GKQVL+T++ +T + +
Sbjct: 647 PTLESATFSKGRNVKTLDNHPAIETVPPAIWKPRCLWSGKQVLTTILNYVTRGRPPFSME 706
Query: 113 HGELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWD 172
G +SG G T L V +R + L GI+DK QFG ++GLVH V +
Sbjct: 707 RGIRVSG----DYIGKTSEEL-------KVLVRGNDFLCGIIDKAQFG--KFGLVHTVQE 753
Query: 173 THGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKAR-RLGTEAA 231
+GA+ A LLS ++LFT YL GFT G+ D+L+ + +R + A LG
Sbjct: 754 LYGADDAGHLLSVFSRLFTSYLFMHGFTCGIADMLLLPGAEEERAAKLEPAENELGDIVH 813
Query: 232 CNALGLPLDTDPEIISSQLQEAYASIPQFRA-----QIDRQYKSLLDKVTNNINQVCLPE 286
+G+ + +++ I Q RA ++D S ++KVT+ +N P+
Sbjct: 814 GRFVGVEDKQLSSVGIEAIKDMTGRILQLRADAGRARLDMLMSSAMNKVTSEVNNALFPK 873
Query: 287 GLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEV 346
GL++PFP N L M +GAKG VN QIS +LGQ ELEGKR MVSG+TLP F PYE
Sbjct: 874 GLVKPFPENCLSLMTVTGAKGGMVNFTQISSMLGQQELEGKRVPRMVSGKTLPCFQPYEP 933
Query: 347 SPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHY 406
R+GGF+ RF+TG++PQE+++HCMAGR+GL+DTAVKT++SGYLQRC++K+LE L ++Y
Sbjct: 934 VARSGGFIKDRFLTGLRPQEYYYHCMAGRDGLVDTAVKTAKSGYLQRCIIKNLECLKINY 993
Query: 407 DMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLS 466
D TVRD+D S+IQ YGED +DVTK LT+ F + N
Sbjct: 994 DFTVRDADGSVIQFFYGEDAVDVTKSSCLTN--FDLMATN-------------------- 1031
Query: 467 LALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTF 526
DL+ Q L + A K K KA ++S
Sbjct: 1032 ---------------------------RDLITQKLGLGEHA--KDVKNMKA----IVSK- 1057
Query: 527 QPDAHFGSISENLADSVVKYTKGRTDAS----------HVDKFYDMIFYKNLLSLANPGE 576
DA+ I E + K+ G ++ H+ + ++ +K SLA PGE
Sbjct: 1058 --DAYITDIPEAMEQKFEKFMGGLSEEKKKAYKLYRRRHIKELRSVMTHKYFASLAAPGE 1115
Query: 577 NVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFL 636
VGVLA QSIGEPSTQMTLNTFHFAGRG+MNVTLGIPRL EIL +A+KAIKTP M P
Sbjct: 1116 PVGVLAGQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLHEILTVASKAIKTPIMTCPLK 1175
Query: 637 PDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCFIPAHMYRDK 696
P K + +LA MT++ + D+LE V E+S P + +P+ +Y+ +
Sbjct: 1176 PG--KTRDEGQKLAGVMTKVMLPDILETV------EVSAVPFYVHHG----VPSRLYKVR 1223
Query: 697 TSVKPSK---IIDHFERKFLKELEVAI-----AKRAAQGLKNMNIEQSRDQMEDDVEDDE 748
V P + I F + KE+E I AK + Q L ++ ++ E ++E +
Sbjct: 1224 LRVYPEEHMAIKSVFAKGVRKEIEREIKALTSAKDSIQIL-GISEDEPSPAGEGEIEGGK 1282
Query: 749 GEGAEG---------------AGAALGRVDVSSDEERDEEDAVQS-HKKVNQEEDNDFEE 792
+ E A R ++DE E D+ Q ++++ + +ND +
Sbjct: 1283 KKVVEAGEVAEEDDDDDDQEEGADAEKRKGRTTDEAAYETDSEQEDEQEMDLDAENDIAD 1342
Query: 793 PE-DEERMSEREED-----------DNTSNI---GERFKIEF---RDSTNVFVKDVVNQH 834
+ DEE+ E +D +S++ G ++++F ++S +F+ ++V +
Sbjct: 1343 GDNDEEKGGEVVDDEEEGHGKEKEGKKSSSVRARGRSYEMKFQANQNSPQLFLPNIVEK- 1401
Query: 835 NIVHKYSYDK-KNHMWCKLLFLPSNLFEEKESKHLLKTDGINV-NFISQYRHLLDLNKLY 892
++ + + KN C + L K L+TDG+N S +LDLNKL
Sbjct: 1402 -VLKTVTVRRMKNIEKCNTIEL-----NGKPENPALQTDGVNFWELWSLPDDVLDLNKLT 1455
Query: 893 VNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNG 952
NDI M +TYG+EAA I+REV+ VF YGI V+ RHLSL+AD+MT G Y +NR G
Sbjct: 1456 SNDIAAMLNTYGVEAARATIVREVQGVFGSYGISVNARHLSLIADFMTFQGGYRPLNRVG 1515
Query: 953 IRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
I NPS KM+FE + + AS++ + D L PS+R+++G+ GTG F L
Sbjct: 1516 IVSNPSPFLKMSFETASQFLIDASLRRQVDELDTPSSRIIVGRTVGLGTGCFDL 1569
>gi|326475279|gb|EGD99288.1| DNA-directed RNA polymerase I [Trichophyton tonsurans CBS 112818]
Length = 1680
Score = 573 bits (1477), Expect = e-160, Method: Compositional matrix adjust.
Identities = 389/1076 (36%), Positives = 570/1076 (52%), Gaps = 136/1076 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA L + QYLV G PL GLIQDH+ G L+ RD+F +Y L+Y L
Sbjct: 654 RAEAMQLADTDHQYLVATSGKPLRGLIQDHLSMGVWLTCRDSFFDEDDYHQLLYSCLRPE 713
Query: 73 NT-----EIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
N+ +I +PP I+KP PLWTGKQ++STV+ N+TP ++ + LD K
Sbjct: 714 NSHTVSDKIWLMPPAIFKPQPLWTGKQIISTVLKNITPDNRAGLN--------LDSKS-- 763
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
ST + VT+R GEL+SGILDK Q G T GL+H++ + +G A L+ L
Sbjct: 764 STPGDRWGDKAEGEVTVRDGELISGILDKSQLGPTVGGLIHSIHEVYGHIVAGKLIGILG 823
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPL----DTDP 243
+L T L FT G+ D+ + +E + KR ++I +A LG E + + L D D
Sbjct: 824 RLLTKVLHMRAFTCGMDDLRLTEEGNAKRKELIQQADGLGKEISLKYVTLDENKVEDEDT 883
Query: 244 EIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVES 303
E+ +L+E + A +D YKS ++++ I + CLP GL +PFP NN+Q M S
Sbjct: 884 EL-QRRLEEVLRDDDK-HAGLDAMYKSRAGELSSEITKACLPSGLEKPFPFNNMQTMTVS 941
Query: 304 GAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQ 363
GAKGS VN ISC LGQ LEG+R +M+SG+TLPSF P+E AGG+V GRF+TGI+
Sbjct: 942 GAKGSMVNANLISCNLGQQVLEGRRVPVMISGKTLPSFQPFETKIGAGGYVFGRFLTGIK 1001
Query: 364 PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRD-SDLSLIQVLY 422
P E++FH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL YD +VRD SD S++Q LY
Sbjct: 1002 PHEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKAEYDTSVRDTSDGSIVQFLY 1061
Query: 423 GEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPN 482
GEDGLD+TK+++L FSFL N I S +N
Sbjct: 1062 GEDGLDITKQKHL--DSFSFLAQNYMSIVSQVNGVN------------------------ 1095
Query: 483 FIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFK-ACPQPLISTFQPDAHFGSISENLAD 541
+K + W + A KK +K + P ++ F P A++GS SE +
Sbjct: 1096 -----DSSKIHSEEASNWSK---AALKKIKKTGQIEAKDPALAHFPPGANYGSTSEKFSS 1147
Query: 542 SVVKYTKGRTDASHVDK-----------FYDMIFYKNLLSLANPGENVGVLAAQSIGEPS 590
++ KY K D DK F M+ K + S+ +PGE +G++A QS+GEPS
Sbjct: 1148 ALKKYLKSNPDNLLKDKSTGEGEITKKAFTTMMNMKYMKSVIDPGEAIGIVAGQSVGEPS 1207
Query: 591 TQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLA 650
TQMTLNTFH AG NVTLGIPRLREI+M A+ I TP+M + + EK A A
Sbjct: 1208 TQMTLNTFHLAGHAAKNVTLGIPRLREIVMTASSHIMTPTMTLKL--NKQTDEKTARLFA 1265
Query: 651 KSMTRITMADVLEKVKIKEWLEISPEPHMN-YQMKFCFIPAHMYRDKTSVKPSKIIDHFE 709
K++T++T+A+V++K+K++E + Y ++ F P Y + +++ + ++ E
Sbjct: 1266 KTITKMTLAEVVDKLKVRERVASQGSAKAKIYDIQIDFFPPEAYCAEYAIQVNDVLRTLE 1325
Query: 710 RKFLKEL----EVAIAKR----------AAQ---GLKNMNIEQSR--------------- 737
KF+ L E + KR AAQ G +E++R
Sbjct: 1326 EKFIPRLVKLTEAELKKRTSEKSLSSPSAAQPEIGASVGVVEEARREGGDNDEDDDEDLD 1385
Query: 738 -DQMEDDVEDDEGEGA-----EGAGAALGRVDVSSDEERDEEDAVQSHKKV---NQEEDN 788
+ ++ G+ + EG + R D + D E D+ED K V N + D
Sbjct: 1386 DAKRASSSRNNAGQASYEAPDEGEQEIIRRQD-TPDLESDDEDTDDKQKPVPVDNGDSDT 1444
Query: 789 DFEEPEDEERMSEREEDDNTSNIGERFKIEFRDSTNV-FVKDVVNQHNIVHKYSYDKKNH 847
D E+P S+ + N + E + ++ T F D + I +Y
Sbjct: 1445 DMEDPGP----SKSRKLANNRDRAEALRGKYPALTQFKFNPDNGSLCTIQLQYDISTPKL 1500
Query: 848 MWCKLL----------FLP---SNLF---EEKESKHLLKTDGINVNFISQYRHLLDLNKL 891
+ L+ F+P S + ++ E +H++ T+G+N+ + Y+ ++D + +
Sbjct: 1501 LLLPLVENAARTSVIQFIPGLGSCAYIPADKGEPEHVV-TEGVNLLAMRDYQDIIDPHSI 1559
Query: 892 YVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRN 951
Y N + +M S YG+EAA I+ EV VF +GI+VD RHL+L+AD MT +G Y A NR
Sbjct: 1560 YSNSVSHMLSLYGVEAARATIVSEVGAVFEGHGIKVDNRHLTLIADVMTQTGGYRAFNRM 1619
Query: 952 GI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
GI + + S + KM+FE + +R A ++ D+L PS+R+++G+ GTG F +
Sbjct: 1620 GIVKDSTSPLMKMSFETTVRFLRDAVLERDWDNLNGPSSRIVVGRVGTVGTGAFDV 1675
>gi|324499651|gb|ADY39856.1| DNA-directed RNA polymerase I subunit RPA1 [Ascaris suum]
Length = 1339
Score = 573 bits (1476), Expect = e-160, Method: Compositional matrix adjust.
Identities = 314/708 (44%), Positives = 425/708 (60%), Gaps = 48/708 (6%)
Query: 2 DGWTQNASHFLK-----AEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG N HF++ E + + NV S +LVPKDG+PL GLIQDHV+SG L+LR F
Sbjct: 642 DGDEMNG-HFVQNRIAQTEVAEIANVGSNFLVPKDGTPLLGLIQDHVVSGVLLTLRGRFF 700
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL 116
+ ++M+LV A + I PP++ KP LW+GKQV+ST+++N P+ + +I
Sbjct: 701 NKEDFMHLVLAAFAQTSQRIVLPPPSMLKPQKLWSGKQVISTILLNCIPRGQPLINLTSK 760
Query: 117 LSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGA 176
L + G+ + ++ V R ELL G+LDK+ +GSTQYGL+H W+ +G
Sbjct: 761 AKTPLSCWKVGNLPAPKFE-MSESEVIFRQAELLVGVLDKQHYGSTQYGLIHCCWELYGH 819
Query: 177 EHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALG 236
A S+LSC ++LFT +LQ GFTLGV DILV ++ D++R ++I R+ G + G
Sbjct: 820 RCATSILSCFSRLFTTHLQYHGFTLGVADILVNKKADKQRKRVIRALRKCGDDVVKECFG 879
Query: 237 LPLDTDPEIISSQLQEAYASI---PQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFP 293
L D I + AY + Q Q+D + K L+K + IN C+P GLI FP
Sbjct: 880 LDTDASQNEIRDVMAGAYCNPRGEDQSVQQLDFRMKEKLNKFSEQINSACVPIGLIRSFP 939
Query: 294 ANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGF 353
N LQ M+ SG+KG+ VN+MQISC LGQIELEG+RP + V+GRTLPSF ++ SPRAGGF
Sbjct: 940 RNALQMMILSGSKGTMVNSMQISCGLGQIELEGRRPPITVTGRTLPSFRAFDTSPRAGGF 999
Query: 354 VDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDS 413
VD RF+TGI PQE FFH MAGREGLIDTAVKTSRSGYLQRC+VKHLEGL HYD TVRD
Sbjct: 1000 VDQRFLTGINPQELFFHTMAGREGLIDTAVKTSRSGYLQRCIVKHLEGLVAHYDSTVRDH 1059
Query: 414 DLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLL 473
D S++Q YGEDG+DV K ++ KQF FL DN+ + + V + ++
Sbjct: 1060 DNSVVQFRYGEDGMDVCKCTFMNPKQFDFLADNLHVLRARVVPKDAIESE---------W 1110
Query: 474 TFKSSGKP---------------------NFI-FSP-HRTKFTMDLLEQWYQLDDKARKK 510
F++S K FI FS HR +L++ W+ L+ R +
Sbjct: 1111 NFRNSEKAYRKVKKWRKRNAGNSEKRYVGGFIEFSKEHRGMSKRELVDMWFALEADRRAE 1170
Query: 511 YRK-KFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGR--TDAS-HVDKFYDMIFYK 566
Y K CP + P G++ E + D + Y K + TDA ++ F +F+K
Sbjct: 1171 YEGIAAKRCPDMVDEKMNPTCTLGALPEKMLDEIDAYVKKKAETDADIPLETFRKTLFWK 1230
Query: 567 NLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAI 626
L S +PGENVG+LAAQSIGEPSTQMTLNTFHFAGRG+MNV LGIPRLREILM A+ +I
Sbjct: 1231 GLRSRCDPGENVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVALGIPRLREILMTASTSI 1290
Query: 627 KTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEIS 674
KTPS EI P ++ + + + R+ + V++K + E + ++
Sbjct: 1291 KTPSAEIRAKPGT--TPERIEAIKRELDRVYLKQVIKKFCVNESINLA 1336
>gi|320163230|gb|EFW40129.1| RNA polymerase I largest subunit [Capsaspora owczarzaki ATCC 30864]
Length = 1900
Score = 572 bits (1475), Expect = e-160, Method: Compositional matrix adjust.
Identities = 388/1130 (34%), Positives = 564/1130 (49%), Gaps = 186/1130 (16%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQ- 67
S +AE F+ N SQYLVP G PL GLIQDHVI GAK+++RD F ++EYM LVY
Sbjct: 817 SELPRAEGYFIANADSQYLVPTSGRPLRGLIQDHVIGGAKMTMRDRFFEQSEYMQLVYAC 876
Query: 68 -------------------------ALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIIN 102
A+ + I L P I KP LW+GKQ++ST++IN
Sbjct: 877 LPEGGTARHGGHGGVALSSSSTTVAAMGVGKQAITMLTPCIIKPKALWSGKQIISTLLIN 936
Query: 103 LTPKDKVIIRHGELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGST 162
LT G + + + ++ +G D V R +++GILDK QFG++
Sbjct: 937 LT--------RGRVPLNLKSASKVPASAWGKNSEEGD--VIFRDSHMMTGILDKSQFGAS 986
Query: 163 QYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINK 222
+GLVHA ++ +GA+ A LL+ ++LFT++LQ GFT+GV D+++ + D R K++
Sbjct: 987 AFGLVHACYELYGADVAGRLLTAFSRLFTIFLQYHGFTIGVEDLVLTPDADAARVKLLRA 1046
Query: 223 ARRLGTEAACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQV 282
A +G E +G +D E++ S + + S Q A +D K+ L+K+T+++
Sbjct: 1047 ATNVGAEETARFVGQADSSDTELLKSNVLRIFRSDEQ-SAALDSVMKTRLNKLTSDVISA 1105
Query: 283 CLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFL 342
C+P+G FP NNL M+ SGAKGS VN QIS LLGQ ELEG+R +MVSG+TLPSF
Sbjct: 1106 CIPDGQRVAFPENNLSLMINSGAKGSKVNHSQISSLLGQQELEGRRVPVMVSGKTLPSFQ 1165
Query: 343 PYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGL 402
++ S RAGG+V RF+TGI+PQE+FFHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEGL
Sbjct: 1166 AFDASARAGGYVTDRFLTGIRPQEYFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGL 1225
Query: 403 TVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKK 462
V+YDMTVRDSD S++Q YGED LD TK +L QFSF+ N + + LN
Sbjct: 1226 RVNYDMTVRDSDGSVVQFHYGEDSLDPTKTIFL--DQFSFVAQNYN---AQEAKLNSRN- 1279
Query: 463 HPLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPL 522
AL +L + K P R ++ +++ P+
Sbjct: 1280 -----ALSILDSSK---------GPRRMAKALEKPDRY-------------------APV 1306
Query: 523 ISTFQPDAHFGSISENLADSVVKYTKGRTD---------------ASHVDKFYD------ 561
+S P H G++SE A S+ +Y + D +S K +
Sbjct: 1307 LSQLHPGLHLGAVSEKFARSLEEYIEKNPDKLLQAAEEETAVVPASSKKGKKHQVAQPKR 1366
Query: 562 ----------MIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLG 611
+++ K + SL PGE VGV+A QSIGEPSTQMTLNTFHFAG G MNVTLG
Sbjct: 1367 QKVPEASLRALMYTKYVNSLVEPGEAVGVVAGQSIGEPSTQMTLNTFHFAGLGAMNVTLG 1426
Query: 612 IPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWL 671
IPRLREILM A+ IKTP M +P L P + +AN L ++++R+ + DVL+ + E +
Sbjct: 1427 IPRLREILMTASPHIKTPHMTLP-LRASPHAKAQANALKQALSRVALGDVLQGAIVNESI 1485
Query: 672 EISPEPHMN-----YQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQ 726
+ N Y +K FI + + + SV + +++ F + + K
Sbjct: 1486 TRRSPKNGNTRFRRYVVKLEFIDPQVCQSEFSVSSNALLNAMSSAFANKFGKVVKKAITT 1545
Query: 727 GLKNMNIEQSRDQMEDDVEDDEGEGAEGA-GAALGRVDV------------------SSD 767
+N+ + E D GA G A G +DV +S
Sbjct: 1546 KSRNLADMVGKAMKEVDEGQSSKAGASATDGDADGPLDVELGRQDDADNNDDGANDEASG 1605
Query: 768 EERDEEDAV-QSHKKVNQEEDN-------------DFEEPE----------------DEE 797
E DEED +S K + ED ++E E + E
Sbjct: 1606 ESSDEEDETPRSKSKRAETEDGTSGSRNSKAREMVTYDEQEGGNDGSDSDSDDASDNEGE 1665
Query: 798 RMSEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPS 857
++ + + ER + ++S + ++ +++ + H+ KLL +
Sbjct: 1666 EGEAKQIASSITTREERARRATKESEGYMTEFTYDEGGRWVQFTMELSLHVK-KLLLV-- 1722
Query: 858 NLFEEKESKHLLKT-DGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREV 916
+L E L+++ GI FI + ++ M I N ++ ++
Sbjct: 1723 SLIERVAKNTLIRSVRGITRCFIKDDAAATPVLATEGVNLQEMWKHANILDVNNILTNDI 1782
Query: 917 KNVFAVYGIE--------------------VDPRHLSLVADYMTHSGTYVAMNRNGIRLN 956
+ YG+E VDPRHLSL+ DYMT G Y NR GI N
Sbjct: 1783 HAIKNTYGVEAARRVITNEISQVFQVYGIGVDPRHLSLIGDYMTFEGGYRPFNRIGIESN 1842
Query: 957 PSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
S KM+FE + +RQ+S+ G +++ +PS+R+++G+ GTG F+L
Sbjct: 1843 VSPFLKMSFETTVHFLRQSSVYGDYEAVESPSSRLVVGRVSGVGTGSFEL 1892
>gi|452840368|gb|EME42306.1| hypothetical protein DOTSEDRAFT_175298 [Dothistroma septosporum
NZE10]
Length = 1715
Score = 570 bits (1468), Expect = e-159, Method: Compositional matrix adjust.
Identities = 383/1092 (35%), Positives = 559/1092 (51%), Gaps = 155/1092 (14%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
+ +AEA + + QYL G+PL GLIQDH+ L+ RD F R EYMNL+Y A
Sbjct: 665 NELARAEALLIADTDHQYLSGTAGNPLRGLIQDHISMCVWLTNRDLFFERGEYMNLLYSA 724
Query: 69 L------CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILD 122
L C + + T+PP + KP PLWTGKQV+STV+ NL P G +
Sbjct: 725 LRPEDRHCA-SHRLETVPPAVIKPNPLWTGKQVISTVLKNLQPA-------GTAGLNMTG 776
Query: 123 KKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISL 182
K +T +G H + V + GEL+ GILDKKQ G + GLV+AV++ +G A L
Sbjct: 777 KSTTAATMWG-EHGKEEGVVIFKDGELMQGILDKKQIGPSAGGLVNAVYEAYGYRAAGRL 835
Query: 183 LSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTD 242
LS L +L T L F+ GV D++ +E + R + + +G + A + L D +
Sbjct: 836 LSILGRLLTKLLHMRAFSCGVEDLIFTREGEEDRRAALAGSDSVGLKVAAKYVSLE-DQN 894
Query: 243 PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNN--------INQVCLPEGLIEPFPA 294
P+ +L++ + + D + LD + NN ++ C+P GL +PFP
Sbjct: 895 PKSDDRELRKRLEDVLR-----DDEKMQGLDSLMNNSTRDLSGDVSNRCMPAGLTKPFPK 949
Query: 295 NNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFV 354
N +Q M SGAKGS VN ISC LGQ LEG+R +MVSG+TLP F P+E S RAGG++
Sbjct: 950 NQMQTMTTSGAKGSKVNVNLISCNLGQQVLEGRRVPVMVSGKTLPCFKPFESSVRAGGYI 1009
Query: 355 DGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDS- 413
RF+TGI+PQE+FFH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL +D +VR +
Sbjct: 1010 VDRFLTGIRPQEYFFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLRAEHDSSVRHTE 1069
Query: 414 DLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLL 473
D S++Q LYGEDGLD+ K +YL D F F +N LSL
Sbjct: 1070 DGSIVQFLYGEDGLDIGKAKYLFD--FKFTAENY-----------------LSL------ 1104
Query: 474 TFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDK-ARKKYRKKFK-ACPQPLISTFQPDAH 531
F ++ + LL++ + K A K++RK +P +S + P H
Sbjct: 1105 -----------FHTYQMDESKQLLDEEVKDHAKAAEKRFRKTGDLGASEPALSLYPPGVH 1153
Query: 532 FGSISEN-LADS----------VVKYTKGRTDASHVDK-FYDMIFYKNLLSLANPGENVG 579
GSISE LAD+ ++K K D K F +++ + L S+ PGE VG
Sbjct: 1154 GGSISEKVLADAREWLDKDKERLIKDKKKNPDGVVSKKNFNNILDMRYLKSVVEPGEAVG 1213
Query: 580 VLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDM 639
V+A QS+GEPSTQMTLNTFH AG NVTLGIPRLREI+M A I TP+M + P +
Sbjct: 1214 VVAGQSVGEPSTQMTLNTFHLAGHAAKNVTLGIPRLREIVMTAAANISTPAMTLVMNPGI 1273
Query: 640 PKLEKKANRLAKSMTRITMADVLEKVKIKEWL--EISPEPHMNYQMKFCFIPAHMYRDKT 697
A + AK ++++++A++++ V + E + + Y ++ F P+ Y+ +
Sbjct: 1274 SV--DDAKKFAKGISKLSLAEIIDNVSVTESIGKGVGYGEARKYDVRLDFFPSEEYQKEY 1331
Query: 698 SVKPSKIIDHFERKFLKELEVA----IAKRAAQ---------------GLKNMNIEQSRD 738
++ ++ E + L L+ A + KR AQ G +E+ R
Sbjct: 1332 AITIQDVVATIEHRLLPRLQAATRKELKKRGAQKSLKTAAGDDALPEIGQSAGRVEEERA 1391
Query: 739 QMEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEER 798
+ E E + + + R S++++ DA + ++ N + D EP D E
Sbjct: 1392 RPEGGREGGDDDSGDEGDDDATRDKSKSNKQQAGYDAYEDDEEQNIRQRQDTPEPIDHEE 1451
Query: 799 --------MSEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC 850
S E D+N + R + + R + ++ H++V +++D K + C
Sbjct: 1452 DETYGGSPRSSVEPDENA--LAARSEAKDRAAR---IRGNERTHDVV-AFNFDDKKGVTC 1505
Query: 851 -----------KLLFLPSNLFE-------------------------EKESKHLLKTDGI 874
K+L L N+ E E + K +L G
Sbjct: 1506 SFTMEYDSGSAKILML--NIIETSLHQALIQSVPGMSLCMLDEEGTKEADGKPILAASGT 1563
Query: 875 NVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSL 934
N+ + Y+H++ + +Y N IH + YG+EAA I++EV +VF +GI VD RHL+L
Sbjct: 1564 NIKAMWDYQHIVHPHHIYTNSIHEILIHYGVEAARNAIVKEVSSVFGGHGISVDTRHLTL 1623
Query: 935 VADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLG 994
+ADYMT G Y A +R G R NPS KM+FE L +R A ++G D L PSAR++ G
Sbjct: 1624 IADYMTRDGAYQAFSRMGYRNNPSPFMKMSFETTLNFLRDAVLEGDFDDLEGPSARIVAG 1683
Query: 995 QECRQGTGLFQL 1006
+ + GTG F +
Sbjct: 1684 RVGKMGTGGFDV 1695
>gi|327294315|ref|XP_003231853.1| DNA-directed RNA polymerase I [Trichophyton rubrum CBS 118892]
gi|326465798|gb|EGD91251.1| DNA-directed RNA polymerase I [Trichophyton rubrum CBS 118892]
Length = 1681
Score = 570 bits (1468), Expect = e-159, Method: Compositional matrix adjust.
Identities = 380/1071 (35%), Positives = 574/1071 (53%), Gaps = 126/1071 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA L + QYLV G PL GLIQDH+ G L+ RD+ +Y L+Y L
Sbjct: 655 RAEAMQLADTDHQYLVATSGKPLRGLIQDHLSMGVWLTCRDSLFDENDYHQLLYSCLRPE 714
Query: 73 NT-----EIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
N+ +I +PP I+KP+PLWTGKQ++STV+ N+TP ++ + LD K
Sbjct: 715 NSHTVSDKIWLMPPAIFKPLPLWTGKQIISTVLKNITPDNRAGLN--------LDSKS-- 764
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
ST + VT+R GEL+SGILDK Q G T GL+H++ + +G A L+ L
Sbjct: 765 STPGDRWGDKAEGEVTVRDGELISGILDKSQLGPTVGGLIHSIHEVYGHIVAGKLIGILG 824
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPL----DTDP 243
+L T L FT G+ D+ + +E + KR ++I +A LG E + + L D D
Sbjct: 825 RLLTKVLHMRAFTCGMDDLRLTEEGNAKRKELIQQADGLGKEISLKYVTLDENKVEDEDT 884
Query: 244 EIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVES 303
E+ +L+E + A +D YKS ++++ I + CLP GL +PFP NN+Q M S
Sbjct: 885 EL-QRRLEEVLRDDDK-HAGLDAMYKSRAGELSSEITKACLPSGLEKPFPFNNMQTMTVS 942
Query: 304 GAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQ 363
GAKGS VN ISC LGQ LEG+R +M+SG+TLPSF P+E AGG+V GRF+TGI+
Sbjct: 943 GAKGSMVNANLISCNLGQQVLEGRRVPVMISGKTLPSFQPFETKIGAGGYVFGRFLTGIK 1002
Query: 364 PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRD-SDLSLIQVLY 422
P E++FH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL YD +VRD SD S++Q LY
Sbjct: 1003 PHEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKAEYDTSVRDTSDGSIVQFLY 1062
Query: 423 GEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPN 482
GEDGLD+TK+++L FSFL N I S +N +K
Sbjct: 1063 GEDGLDITKQKHL--DSFSFLAQNYMSIVSQ---VNGVKDS------------------- 1098
Query: 483 FIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFK-ACPQPLISTFQPDAHFGSISENLAD 541
+K + W + A KK +K K P ++ F P A++GS SE +
Sbjct: 1099 -------SKIHSEEATNWSK---AALKKIKKTGKIEAKDPALAHFPPGANYGSTSEKFSS 1148
Query: 542 SVVKYTKGRTDASHVDK-----------FYDMIFYKNLLSLANPGENVGVLAAQSIGEPS 590
++ KY K D DK F M+ K + S+ +PGE +G++A QS+GEPS
Sbjct: 1149 ALKKYLKSNPDNLLKDKSTGEGEITKKAFTTMMNMKYMKSVIDPGEAIGIVAGQSVGEPS 1208
Query: 591 TQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLA 650
TQMTLNTFH AG NVTLGIPRLREI+M A+ I TP+M + + EK A A
Sbjct: 1209 TQMTLNTFHLAGHAAKNVTLGIPRLREIVMTASSHIMTPTMTLKL--NKQTDEKTARLFA 1266
Query: 651 KSMTRITMADVLEKVKIKEWLEISPEPHMN-YQMKFCFIPAHMYRDKTSVKPSKIIDHFE 709
K++T++T+A+V++K+K++E + Y ++ F P Y + +++ + ++ E
Sbjct: 1267 KTITKLTLAEVVDKLKVRERVTSQGSTKAKVYDIQIDFFPPEAYCAEYAIQVNDVLRTLE 1326
Query: 710 RKFLKEL----EVAIAKRAAQ-GLKNMNIEQSR-DQMEDDVEDDEGEG------------ 751
KF+ L E + KR ++ L + + Q VE+ EG
Sbjct: 1327 EKFIPRLVKLTEAELKKRTSEKSLSSPSAAQPEIGASVGVVEEARREGRDNDEDDDEDLD 1386
Query: 752 -AEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNTSN 810
A+ A ++ +S E DE + ++ + ++D E+ +D+++ + + D+ ++
Sbjct: 1387 DAKRASSSRNNAGQASYEAPDEGEQEIIRRQNTPDLESDDEDTDDKQKPAIVDNSDSDTD 1446
Query: 811 IGERFKIEFRDSTNV--FVKDVVNQHNIVHKYSYDKKNHMWC-----------KLLFLP- 856
+ + R N + + ++ + ++ ++ N C KLL LP
Sbjct: 1447 MEVPGPSKTRKLANSRDRAEALRGKYPALTQFKFNPDNGSLCTIQLQYDISTPKLLLLPL 1506
Query: 857 -----------------SNLF---EEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDI 896
S + ++ E +H++ T+G+N+ + Y+ ++D + +Y N +
Sbjct: 1507 VENAARTSVIQFIPGLGSCAYIPADKGEPEHVV-TEGVNLLAMRDYQDIIDPHSIYSNSV 1565
Query: 897 HYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RL 955
+M YG+EAA I+ EV VF +GI+VD RHL+L+AD MT +G Y A NR GI +
Sbjct: 1566 SHMLGLYGVEAARATIVSEVGAVFEGHGIKVDNRHLTLIADVMTQTGGYRAFNRMGIVKD 1625
Query: 956 NPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+ S + KM+FE + +R A ++ D+L PS+R+++G+ GTG F +
Sbjct: 1626 STSPLMKMSFETTVRFLRDAVLERDWDNLNGPSSRIVVGRVGTVGTGAFDV 1676
>gi|358370847|dbj|GAA87457.1| DNA-directed RNA polymerase I subunit [Aspergillus kawachii IFO 4308]
Length = 1796
Score = 567 bits (1462), Expect = e-159, Method: Compositional matrix adjust.
Identities = 373/1076 (34%), Positives = 567/1076 (52%), Gaps = 128/1076 (11%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
+ ++EA L + QYLV G PL GLIQDH+ G + RD+F EY L+Y
Sbjct: 766 NELARSEAMMLADADHQYLVATSGKPLRGLIQDHISMGTWFTCRDSFFDEEEYYQLLYSC 825
Query: 69 LCILNT-----EIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDK 123
L N+ I+T+ PT+ +P LWTGKQ++ST++ N+ P D+ + S D+
Sbjct: 826 LRPENSHTITDRIQTVGPTVIRPKRLWTGKQIISTILKNIMPSDRAGLNLKSKSSTPGDR 885
Query: 124 KQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLL 183
G+ + V + GE+L GILDKKQ G T GL+ A+ + +G A L+
Sbjct: 886 WGEGNEE---------GEVIFKDGEMLCGILDKKQIGPTAGGLIDAIHEIYGHTIAGRLI 936
Query: 184 SCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDP 243
S L +L T YL FT G+ D+ + E DR R + I++A +G E A + L T P
Sbjct: 937 SILGRLLTRYLNMRAFTCGIDDLRLTPEGDRVRKEKISEAAAIGREVALKYVTLDQTTVP 996
Query: 244 EIISSQLQEAYASI---PQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFM 300
+ ++L+ + + + +D + K++ I + CLP+GL++PFP N +Q M
Sbjct: 997 DQ-DAELRRRMEEVLRDDEKQGGLDSVSNARTAKLSTEITKACLPKGLVKPFPWNQMQSM 1055
Query: 301 VESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMT 360
SGAKGS+VN ISC LGQ LEG+R +MVSG+TLPSF ++ +P AGG+V GRF+T
Sbjct: 1056 TISGAKGSSVNANLISCNLGQQVLEGRRVPVMVSGKTLPSFRAFDTNPMAGGYVCGRFLT 1115
Query: 361 GIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRD-SDLSLIQ 419
GI+PQE++FH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL YD +VR+ +D S++Q
Sbjct: 1116 GIKPQEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKAEYDSSVREATDGSIVQ 1175
Query: 420 VLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSG 479
LYGEDGLD+TK+ +L D F FL N I S
Sbjct: 1176 FLYGEDGLDITKQVHLKD--FDFLASNYVSIMS--------------------------- 1206
Query: 480 KPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKA-CPQPLISTFQPDAHFGSISEN 538
+ N H + + W++ A KK RK K P++S + P + GSISEN
Sbjct: 1207 QVNLTSDFH--NLEKEEVANWHK---DAMKKVRKTGKVEAMDPVLSLYHPGGNLGSISEN 1261
Query: 539 LADSVVKYTKGRTDASHV------------DKFYDMIFYKNLLSLANPGENVGVLAAQSI 586
+ ++ KY D F ++ K + S+ PGE +G++A QSI
Sbjct: 1262 FSQALKKYEDANPDKLLKDKKKDVNGIISKKAFNTLMNMKYMKSVVEPGEAIGIVAGQSI 1321
Query: 587 GEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKA 646
GEPSTQMTLNTFH AG NVTLGIPRLREI+M A+ I TP+M + ++ K + +
Sbjct: 1322 GEPSTQMTLNTFHLAGHSAKNVTLGIPRLREIVMTASAHIMTPTMTLILNDELSK--EHS 1379
Query: 647 NRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIID 706
R AK+++++++A+V++KV+++E + Y + F PA Y + ++ + +
Sbjct: 1380 ERFAKAISKLSIAEVVDKVQVRERVSSGSVKAKVYDIDITFFPADEYTAEYAITTKDVQN 1439
Query: 707 HFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGA-GAALGRVDVS 765
++K + +L V + K + + + + ++ G +G GA
Sbjct: 1440 TLQKKLIPKL-VKLTKAELKKRVDEKTLKKYSTAQPEIGASVGTVQDGPRGADADAEPAD 1498
Query: 766 SDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREE-------DDNTSNIGERFKIE 818
D E DE+DA ++ N+ +E PEDEE R++ DD N GE+ +E
Sbjct: 1499 DDVEDDEDDAKRARGTQNRSNQVSYEGPEDEEVDMVRQQDAEEDDDDDEEGNAGEKRDVE 1558
Query: 819 FRDS-----------TNVFVKDVVNQHNIVHKYSYDKKNHMWC-----------KLLFLP 856
D+ T + +D+ NQ+ V ++ ++ ++ C KLL LP
Sbjct: 1559 MDDASDEESEGETKDTKLREEDIKNQYQEVTQFKFNPRDGGSCTIQLQYDIDTPKLLLLP 1618
Query: 857 SNLFEEK-------------------------ESKHLLKTDGINVNFISQYRHLLDLNKL 891
L E+ E H++ TDG+N+ + Y+ ++ + L
Sbjct: 1619 --LVEDACRNAVIQSIPGLGNCTFVEADPIKGEPAHVI-TDGVNLLAMRDYQDIIKPHSL 1675
Query: 892 YVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRN 951
Y N IH M + YG+EAA I++E+ +VF + I VD RHL+L+ D MT SG + NRN
Sbjct: 1676 YTNSIHDMLNLYGVEAARASIVKEMSDVFQGHSISVDNRHLNLIGDVMTQSGGFRPFNRN 1735
Query: 952 G-IRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
G ++ S + KM+FE + +++A ++ D+L++PSAR+++G+ GTG F +
Sbjct: 1736 GLVKDGSSPLAKMSFETTVGYLKEAVVERDFDNLKSPSARIVVGRTGTVGTGAFDV 1791
>gi|121701207|ref|XP_001268868.1| DNA-directed RNA polymerase I subunit (Rpa190), putative [Aspergillus
clavatus NRRL 1]
gi|119397011|gb|EAW07442.1| DNA-directed RNA polymerase I subunit (Rpa190), putative [Aspergillus
clavatus NRRL 1]
Length = 1734
Score = 567 bits (1461), Expect = e-158, Method: Compositional matrix adjust.
Identities = 381/1089 (34%), Positives = 565/1089 (51%), Gaps = 152/1089 (13%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
+ +AEA L + QYLV G PL GLIQDH+ G + RDTF +Y L+Y
Sbjct: 702 NELARAEAMMLADADHQYLVATSGKPLRGLIQDHISMGTWFTCRDTFFNEEDYYELLYSC 761
Query: 69 LCILNT-----EIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDK 123
L N+ I+ + PT+ KP LWTGKQV++T++ N+ P + + S D+
Sbjct: 762 LRPENSHTITERIQLVEPTVLKPTRLWTGKQVITTILKNIMPPGRAGLNLKSKSSTPGDR 821
Query: 124 KQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLL 183
G+ + V + GE+L GILDKKQ G T GLV A+ + +G A L+
Sbjct: 822 WGEGNEE---------GSVIFKDGEMLCGILDKKQIGPTAGGLVDAIHEIYGHTIAGRLI 872
Query: 184 SCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDP 243
S L +L T YL FT G+ D+ + +E D+ R +II++A G + A + L T P
Sbjct: 873 SILGRLLTRYLNMRAFTCGIDDLRLTKEGDQVRKQIISQAASAGRDVALKYVTLDQTTVP 932
Query: 244 EIISSQLQEAYASI---PQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFM 300
+ ++L+ + ++ +D + + K++ I + CLP+GL +PFP N +Q M
Sbjct: 933 DQ-DTELRRRLEDVLRDDDKQSGLDSVSNAQMAKLSTEITKACLPKGLAKPFPWNQMQSM 991
Query: 301 VESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMT 360
SGAKGS VN ISC LGQ LEG+R +M+SG+TLPSF ++ P AGGFV GRF+T
Sbjct: 992 TISGAKGSGVNANLISCNLGQQVLEGRRVPVMISGKTLPSFRAFDTHPMAGGFVCGRFLT 1051
Query: 361 GIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRD-SDLSLIQ 419
GI+PQE++FH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL YD +VR+ SD S+IQ
Sbjct: 1052 GIKPQEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLRAEYDTSVRESSDGSIIQ 1111
Query: 420 VLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSG 479
LYGEDGLD+TK+ +L D F FL N I S ++ L F S
Sbjct: 1112 FLYGEDGLDITKQVHLKD--FDFLTSNYVSIMS---------------SVNLTSDFHSLE 1154
Query: 480 KPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKA-CPQPLISTFQPDAHFGSISEN 538
K + + W++ A KK RK K P++S + P + GS SE
Sbjct: 1155 K--------------EEVTNWHK---DAMKKVRKSGKVDAMDPVLSRYHPGGNLGSTSEA 1197
Query: 539 LADSVVKYTKGRTDASHVDK------------FYDMIFYKNLLSLANPGENVGVLAAQSI 586
+ ++ KY D DK F ++ K L S+ +PGE VG++A QSI
Sbjct: 1198 FSQALKKYEDINPDKLLRDKKKQIDGLISKKAFNTLMNMKYLKSVVDPGEAVGIVAGQSI 1257
Query: 587 GEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKA 646
GEPSTQMTLNTFH AG NVTLGIPRLREI+M A+ I TP+M + ++ K + +
Sbjct: 1258 GEPSTQMTLNTFHLAGHSAKNVTLGIPRLREIVMTASAHIMTPTMTLILNEELSK--EDS 1315
Query: 647 NRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIID 706
R AK+++++++A+V++KV++KE + + Y + F P Y + ++ +
Sbjct: 1316 ERFAKAISKLSIAEVVDKVQVKERISSTGSRSKVYDIDITFFPVEEYTKEYAITTKDVQS 1375
Query: 707 HFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRVDVSS 766
+ KF+ +L K LK N E++ D G ++G VD
Sbjct: 1376 TLQNKFIPKL----VKLTRGELKKRNDEKTLKSFSTAQPD--------IGVSVGVVDEGP 1423
Query: 767 -DEERDEE-----------DAVQSHKKVNQEEDNDFEEPEDEERMSER---------EED 805
+R+ E DA ++ N+ +E PEDEE R +E+
Sbjct: 1424 RGPDREAEPMEDDVEDDEDDAKRARSGQNRSNQVSYEGPEDEEVAMVREQDDEEEDEDEE 1483
Query: 806 DNTSNIGERFKIEFRDS-----------TNVFVKDVVNQHNIVHKYSYDKKNHMWC---- 850
+ T N E +E D+ T + +D+ ++ V ++ ++ K C
Sbjct: 1484 EQTGNRHESSDVEMEDASDDEAEDHTKDTKLREEDIKGKYGEVTQFKFNPKKGTTCTVQL 1543
Query: 851 -------KLLFLPSNLFEEK-------------------------ESKHLLKTDGINVNF 878
KLL LP L EE E H++ T+G+N+
Sbjct: 1544 QYDISTPKLLLLP--LVEEAARSAVIQSIPGLGNCTYVEANPLKGEPAHVI-TEGVNLLA 1600
Query: 879 ISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADY 938
+ Y+ ++ + LY N IH+M + YG+EAA I+RE+ +VF + I VD RHL+L+ D
Sbjct: 1601 MRDYQDIIKPHSLYTNSIHHMLTLYGVEAARASIVREMSDVFEGHSISVDNRHLNLIGDV 1660
Query: 939 MTHSGTYVAMNRNG-IRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQEC 997
MT SG + A NRNG ++ + S + KM+FE + ++ A ++ D+L++PS+R+++G+
Sbjct: 1661 MTQSGGFRAFNRNGLVKDSSSPLAKMSFETTVGFLKDAVIERDFDNLKSPSSRIVVGRAG 1720
Query: 998 RQGTGLFQL 1006
GTG F +
Sbjct: 1721 MVGTGAFDV 1729
>gi|149247078|ref|XP_001527964.1| DNA-directed RNA polymerase I 190 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
gi|146447918|gb|EDK42306.1| DNA-directed RNA polymerase I 190 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
Length = 1668
Score = 567 bits (1461), Expect = e-158, Method: Compositional matrix adjust.
Identities = 369/1083 (34%), Positives = 566/1083 (52%), Gaps = 138/1083 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCI- 71
KAEA L N SQYL P G+PL GLIQDH+ +G L+ +D+F R Y L+Y CI
Sbjct: 626 KAEALNLANTDSQYLTPTSGAPLRGLIQDHISAGIWLTSKDSFFDRDTYHQLIYG--CIR 683
Query: 72 ------LNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQ 125
I T+PP ++KP LWTGKQV++T+++N+ P + + L+S K +
Sbjct: 684 PEDGHTTRNRIITVPPAVFKPQFLWTGKQVITTILLNIKPNN---VPGVNLISKNKVKSE 740
Query: 126 FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSC 185
+ S + V ++GELL GILDK Q+G++QYG+VH++ + +G + A LS
Sbjct: 741 YWSKDS------TENEVIFKNGELLCGILDKSQYGASQYGIVHSLHEVYGPDVAGKALSV 794
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEI 245
L +LFT + T G+ D+ + +E + R I+ ++ +G AA L DT E
Sbjct: 795 LGRLFTNFNTMYALTCGMDDLRLTEEGNAWRNDILKQSVDIGRVAATEVTNLLQDTPNED 854
Query: 246 --ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVES 303
+ +L+E + +D +S ++ +T+ + C+P+G ++ FP N +Q M S
Sbjct: 855 KELRRRLEEILRDDSKL-GILDAITQSKVNTITSQVVSKCVPDGTMKKFPYNAMQAMALS 913
Query: 304 GAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQ 363
GAKGS VN QI CLLGQ LEG+R +MVSG+TLPSF +E RAGG++ RF +GI+
Sbjct: 914 GAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKSFETDARAGGYIKQRFYSGIR 973
Query: 364 PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYG 423
PQE++FHCMAGREGLIDTAVKTSRSGYLQRCL K LEG+ V+YD +VRD D ++IQ LYG
Sbjct: 974 PQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVNYDNSVRDGDGTMIQFLYG 1033
Query: 424 EDGLDVTKRQYLTDKQFSF-LEDNIKWICSYK---VILNLLKKHPLSLALLLLLTFKSSG 479
D +D TK+ ++ QF+F LE+ + Y ++ NL LS + + + K
Sbjct: 1034 GDSIDTTKKSHMN--QFNFCLENYDALLAKYNPGDMVDNLDTTEALSYSKKVRKSLKKQQ 1091
Query: 480 KPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSIS--- 536
PH EQ + D P+++ + P + GS+S
Sbjct: 1092 N-----IPH--------YEQTIKYD----------------PVLNVYNPSKYLGSVSEKF 1122
Query: 537 -ENLADSVVK----YTKGRTDASHVD-----KFYDMIFYKNLLSLANPGENVGVLAAQSI 586
ENL V K + + + +A + KF ++ K + SL NPGE+VG++A+QSI
Sbjct: 1123 QENLEAFVDKNPNLFAQSKEEAKTTNKLTEKKFRALMQLKYMRSLVNPGESVGIIASQSI 1182
Query: 587 GEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKA 646
GEPSTQMTLNTFHFAG G NVTLGIPR+REI+M A+ +IKTP M +P L D+ +++A
Sbjct: 1183 GEPSTQMTLNTFHFAGHGAANVTLGIPRMREIIMTASASIKTPQMTLPILNDV--TDEQA 1240
Query: 647 NRLAKSMTRITMADVLEKVKIKEWL--EISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKI 704
+ KS+ R+ M++ ++ V + E + + +Y ++ F Y + + ++
Sbjct: 1241 DAFCKSIARVVMSEFVDNVTVTETTSQDANGSNSRSYIIRLNFYTKDEYEAEYDISQEQL 1300
Query: 705 IDHFERKFLKELEVAIAKRAAQGLKNMNIEQ-SRDQMEDDVEDDEGEGAEGAGAALG--- 760
F+ LE I K + K + + + D+E G+ E +
Sbjct: 1301 EQVVTSTFIHALEAQIVKEVKKQKKPEYMPTVGKSAGKTDMETVSGKIKELSDGEDEDNE 1360
Query: 761 ---------------RVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREED 805
+ VS D D+E V++ K+ + D + +E + S+ + D
Sbjct: 1361 DEDEDAEEEGLKNKKKQQVSYDGPDDDE--VETMKRAEETSDEEMDEGDTSSSDSDSDSD 1418
Query: 806 DNTSNIGERFKIEFRDSTNVFVK-------DVVNQHNIVHKYSYDKKNHMWC-------- 850
++ + E ++ + N + +V+ QHN+V ++++D N WC
Sbjct: 1419 SDSDSDSEDVDMDKDNKKNELSRQAKDRQAEVIAQHNMVAQFNFDDDNGEWCEFKLELNG 1478
Query: 851 ----KLLFLPSNLFEE-----------------------KESKHLLKTDGINVNFISQYR 883
KLL + N+ EE K +L T+G+N +
Sbjct: 1479 NETQKLLMV--NIVEELLRKTVVREIPHIGRCLRPEPDAATGKRVLTTEGVNFRAMWDQD 1536
Query: 884 HLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSG 943
+++N + NDI + TYG+EAA I+ E+ VF YGI V P HL L+AD MT G
Sbjct: 1537 DFINVNAITSNDIASVLRTYGVEAARNTIVNEIYRVFDTYGISVSPHHLELIADMMTREG 1596
Query: 944 TYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGL 1003
+Y+A NR GI + S KM++E + + +A + G + L +PSA++++G+ GTG
Sbjct: 1597 SYLAFNRQGIDSSTSSFMKMSYETTCQFLTKAVLDGDREELESPSAKIVMGKLSNVGTGS 1656
Query: 1004 FQL 1006
F +
Sbjct: 1657 FDV 1659
>gi|145240347|ref|XP_001392820.1| DNA-directed RNA polymerase i [Aspergillus niger CBS 513.88]
gi|134077337|emb|CAK39952.1| unnamed protein product [Aspergillus niger]
Length = 1680
Score = 566 bits (1459), Expect = e-158, Method: Compositional matrix adjust.
Identities = 374/1081 (34%), Positives = 570/1081 (52%), Gaps = 138/1081 (12%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
+ ++EA L + QYLV G PL GLIQDH+ G + RD+F EY L+Y
Sbjct: 650 NELARSEAMMLADADHQYLVATSGKPLRGLIQDHISMGTWFTCRDSFFDEEEYYQLLYSC 709
Query: 69 LCILNT-----EIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDK 123
L N+ I+T+ PT+ +P LWTGKQ++ST++ N+ P D+ + S D+
Sbjct: 710 LRPENSHTITDRIQTVGPTVIRPKRLWTGKQIISTILKNIMPSDRAGLNLKSKSSTPGDR 769
Query: 124 KQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLL 183
G+ + V + GE+L GILDKKQ G T GL+ A+ + +G A L+
Sbjct: 770 WGEGNEE---------GEVIFKDGEMLCGILDKKQIGPTAGGLIDAIHEIYGHTIAGRLI 820
Query: 184 SCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDP 243
S L +L T YL FT G+ D+ + E DR R + I++A +G E A + L T P
Sbjct: 821 SILGRLLTRYLNMRAFTCGIDDLRLTPEGDRVRKEKISEAAAIGREVALKYVTLDQTTVP 880
Query: 244 EIISSQLQEAYASI---PQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFM 300
+ ++L+ + + + +D + K++ I + CLP+GL++PFP N +Q M
Sbjct: 881 DQ-DAELRRRMEEVLRDDEKQGGLDSVSNARTAKLSTEITKACLPKGLVKPFPWNQMQSM 939
Query: 301 VESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMT 360
SGAKGS+VN ISC LGQ LEG+R +MVSG+TLPSF ++ +P AGG+V GRF+T
Sbjct: 940 TISGAKGSSVNANLISCNLGQQVLEGRRVPVMVSGKTLPSFRAFDTNPMAGGYVCGRFLT 999
Query: 361 GIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRD-SDLSLIQ 419
GI+PQE++FH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL YD +VR+ +D S++Q
Sbjct: 1000 GIKPQEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKAEYDSSVREATDGSIVQ 1059
Query: 420 VLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSG 479
LYGEDGLD+TK+ +L D F FL N I S
Sbjct: 1060 FLYGEDGLDITKQVHLKD--FDFLASNYVSIMS--------------------------- 1090
Query: 480 KPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKA-CPQPLISTFQPDAHFGSISEN 538
+ N H + + W++ A KK RK K P++S + P + GSISE+
Sbjct: 1091 QVNLTSDFH--NLEKEEVANWHK---DAMKKVRKTGKVDAMDPVLSLYHPGGNLGSISES 1145
Query: 539 LADSVVKYTKGRTDASHV------------DKFYDMIFYKNLLSLANPGENVGVLAAQSI 586
+ ++ KY D F ++ K + S+ PGE +G++A QSI
Sbjct: 1146 FSQALKKYEDANPDKLLKDKKKDVNGIISKKAFNTLMNMKYMKSVVEPGEAIGIVAGQSI 1205
Query: 587 GEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKA 646
GEPSTQMTLNTFH AG NVTLGIPRLREI+M A+ I TP+M + ++ K + +
Sbjct: 1206 GEPSTQMTLNTFHLAGHSAKNVTLGIPRLREIVMTASAHIMTPTMTLILNDELSK--EHS 1263
Query: 647 NRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIID 706
R AK+++++++A+V++KV+++E + Y + F PA Y + ++ + +
Sbjct: 1264 ERFAKAISKLSIAEVVDKVQVRERVSSGSVKAKVYDIDITFFPADEYTAEYAITTKDVQN 1323
Query: 707 HFERKFLKEL----EVAIAKRA-AQGLKNMNIEQSRDQMEDDVEDDEGEGAEGA-GAALG 760
++K + +L + + KR + LK + Q ++ G +G GA
Sbjct: 1324 TLQKKLIPKLVRSTKAELKKRVDEKTLKKYSTAQP------EIGASVGTVQDGPRGADAD 1377
Query: 761 RVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREED-------DNTSNIGE 813
D E DE+DA ++ N+ +E PEDEE R++D D N GE
Sbjct: 1378 AEPADDDVEDDEDDAKRARGTQNRSNQVSYEGPEDEEVDMVRQQDAEEDDDEDEEDNAGE 1437
Query: 814 RFKIEFRDSTN-----------VFVKDVVNQHNIVHKYSYDKKNHMWC-----------K 851
+ +E D+++ + +D+ NQ+ V ++ ++ ++ C K
Sbjct: 1438 KRDVEMDDASDEESEGEAKDSKLREEDIKNQYQEVTQFKFNPRDGGSCTIQLQYDIDTPK 1497
Query: 852 LLFLPSNLFEEK-------------------------ESKHLLKTDGINVNFISQYRHLL 886
LL LP L E+ E H++ TDG+N+ + Y+ ++
Sbjct: 1498 LLLLP--LVEDACRSAVIQSIPGLGNCTFVEADPIKGEPAHVI-TDGVNLLAMRDYQDII 1554
Query: 887 DLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYV 946
+ LY N IH M + YG+EAA I++E+ +VF + I VD RHL+L+ D MT SG +
Sbjct: 1555 KPHSLYTNSIHDMLNLYGVEAARASIVKEMSDVFQGHSISVDNRHLNLIGDVMTQSGGFR 1614
Query: 947 AMNRNG-IRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQ 1005
NRNG ++ S + KM+FE + +++A ++ D+L++PSAR+++G+ GTG F
Sbjct: 1615 PFNRNGLVKDGSSPLAKMSFETTVGYLKEAVVERDFDNLKSPSARIVVGRTGTVGTGAFD 1674
Query: 1006 L 1006
+
Sbjct: 1675 V 1675
>gi|350629866|gb|EHA18239.1| DNA-directed RNA polymerase [Aspergillus niger ATCC 1015]
Length = 1684
Score = 566 bits (1459), Expect = e-158, Method: Compositional matrix adjust.
Identities = 374/1081 (34%), Positives = 570/1081 (52%), Gaps = 138/1081 (12%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
+ ++EA L + QYLV G PL GLIQDH+ G + RD+F EY L+Y
Sbjct: 654 NELARSEAMMLADADHQYLVATSGKPLRGLIQDHISMGTWFTCRDSFFDEEEYYQLLYSC 713
Query: 69 LCILNT-----EIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDK 123
L N+ I+T+ PT+ +P LWTGKQ++ST++ N+ P D+ + S D+
Sbjct: 714 LRPENSHTITDRIQTVGPTVIRPKRLWTGKQIISTILKNIMPSDRAGLNLKSKSSTPGDR 773
Query: 124 KQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLL 183
G+ + V + GE+L GILDKKQ G T GL+ A+ + +G A L+
Sbjct: 774 WGEGNEE---------GEVIFKDGEMLCGILDKKQIGPTAGGLIDAIHEIYGHTIAGRLI 824
Query: 184 SCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDP 243
S L +L T YL FT G+ D+ + E DR R + I++A +G E A + L T P
Sbjct: 825 SILGRLLTRYLNMRAFTCGIDDLRLTPEGDRVRKEKISEAAAIGREVALKYVTLDQTTVP 884
Query: 244 EIISSQLQEAYASI---PQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFM 300
+ ++L+ + + + +D + K++ I + CLP+GL++PFP N +Q M
Sbjct: 885 DQ-DAELRRRMEEVLRDDEKQGGLDSVSNARTAKLSTEITKACLPKGLVKPFPWNQMQSM 943
Query: 301 VESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMT 360
SGAKGS+VN ISC LGQ LEG+R +MVSG+TLPSF ++ +P AGG+V GRF+T
Sbjct: 944 TISGAKGSSVNANLISCNLGQQVLEGRRVPVMVSGKTLPSFRAFDTNPMAGGYVCGRFLT 1003
Query: 361 GIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRD-SDLSLIQ 419
GI+PQE++FH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL YD +VR+ +D S++Q
Sbjct: 1004 GIKPQEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKAEYDSSVREATDGSIVQ 1063
Query: 420 VLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSG 479
LYGEDGLD+TK+ +L D F FL N I S
Sbjct: 1064 FLYGEDGLDITKQVHLKD--FDFLASNYVSIMS--------------------------- 1094
Query: 480 KPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKA-CPQPLISTFQPDAHFGSISEN 538
+ N H + + W++ A KK RK K P++S + P + GSISE+
Sbjct: 1095 QVNLTSDFH--NLEKEEVANWHK---DAMKKVRKTGKVDAMDPVLSLYHPGGNLGSISES 1149
Query: 539 LADSVVKYTKGRTDASHV------------DKFYDMIFYKNLLSLANPGENVGVLAAQSI 586
+ ++ KY D F ++ K + S+ PGE +G++A QSI
Sbjct: 1150 FSQALKKYEDANPDKLLKDKKKDVNGIISKKAFNTLMNMKYMKSVVEPGEAIGIVAGQSI 1209
Query: 587 GEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKA 646
GEPSTQMTLNTFH AG NVTLGIPRLREI+M A+ I TP+M + ++ K + +
Sbjct: 1210 GEPSTQMTLNTFHLAGHSAKNVTLGIPRLREIVMTASAHIMTPTMTLILNDELSK--EHS 1267
Query: 647 NRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIID 706
R AK+++++++A+V++KV+++E + Y + F PA Y + ++ + +
Sbjct: 1268 ERFAKAISKLSIAEVVDKVQVRERVSSGSVKAKVYDIDITFFPADEYTAEYAITTKDVQN 1327
Query: 707 HFERKFLKEL----EVAIAKRA-AQGLKNMNIEQSRDQMEDDVEDDEGEGAEGA-GAALG 760
++K + +L + + KR + LK + Q ++ G +G GA
Sbjct: 1328 TLQKKLIPKLVRSTKAELKKRVDEKTLKKYSTAQP------EIGASVGTVQDGPRGADAD 1381
Query: 761 RVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREED-------DNTSNIGE 813
D E DE+DA ++ N+ +E PEDEE R++D D N GE
Sbjct: 1382 AEPADDDVEDDEDDAKRARGTQNRSNQVSYEGPEDEEVDMVRQQDAEEDDDEDEEDNAGE 1441
Query: 814 RFKIEFRDSTN-----------VFVKDVVNQHNIVHKYSYDKKNHMWC-----------K 851
+ +E D+++ + +D+ NQ+ V ++ ++ ++ C K
Sbjct: 1442 KRDVEMDDASDEESEGEAKDSKLREEDIKNQYQEVTQFKFNPRDGGSCTIQLQYDIDTPK 1501
Query: 852 LLFLPSNLFEEK-------------------------ESKHLLKTDGINVNFISQYRHLL 886
LL LP L E+ E H++ TDG+N+ + Y+ ++
Sbjct: 1502 LLLLP--LVEDACRSAVIQSIPGLGNCTFVEADPIKGEPAHVI-TDGVNLLAMRDYQDII 1558
Query: 887 DLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYV 946
+ LY N IH M + YG+EAA I++E+ +VF + I VD RHL+L+ D MT SG +
Sbjct: 1559 KPHSLYTNSIHDMLNLYGVEAARASIVKEMSDVFQGHSISVDNRHLNLIGDVMTQSGGFR 1618
Query: 947 AMNRNG-IRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQ 1005
NRNG ++ S + KM+FE + +++A ++ D+L++PSAR+++G+ GTG F
Sbjct: 1619 PFNRNGLVKDGSSPLAKMSFETTVGYLKEAVVERDFDNLKSPSARIVVGRTGTVGTGAFD 1678
Query: 1006 L 1006
+
Sbjct: 1679 V 1679
>gi|315056319|ref|XP_003177534.1| DNA-directed RNA polymerase I subunit RPA1 [Arthroderma gypseum CBS
118893]
gi|311339380|gb|EFQ98582.1| DNA-directed RNA polymerase I subunit RPA1 [Arthroderma gypseum CBS
118893]
Length = 1679
Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust.
Identities = 376/1069 (35%), Positives = 578/1069 (54%), Gaps = 123/1069 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA L + QYLV G PL GLIQDH+ G L+ RD+F ++Y L+Y L
Sbjct: 654 RAEAMQLADTDHQYLVATSGKPLRGLIQDHLSMGVWLTCRDSFFDESDYHQLLYSCLRPE 713
Query: 73 NT-----EIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
N+ +I +PP I+KP PLWTGKQ++STV+ N+TP ++ + LD K
Sbjct: 714 NSHTVSDKIWLMPPAIFKPQPLWTGKQIISTVLKNITPDNRAGLN--------LDSKS-- 763
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
ST + VT R GEL+SGILDK Q G T GL+H++ + +G A L+ L
Sbjct: 764 STPGDRWGDKAEAEVTFRDGELISGILDKSQLGPTVGGLIHSIHEVYGHIVAGKLIGILG 823
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL---PLDTDPE 244
+L T L FT G+ D+ + +E + KR ++I +A LG E + + L ++ +
Sbjct: 824 RLLTKVLHMRAFTCGMDDLRLTEEGNAKRKELIQRAEGLGNEISLKYVTLDENKVENEEV 883
Query: 245 IISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESG 304
+ +L+E + A +D YKS ++++ I + CLP GL +PFP NN+Q M SG
Sbjct: 884 ELKRRLEEVLRDDDK-HAGLDAMYKSRAGELSSEITKACLPSGLEKPFPLNNMQTMTVSG 942
Query: 305 AKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQP 364
AKGS VN ISC LGQ LEG+R +M+SG+TLPSF P+E AGG+V GRF+TGI+P
Sbjct: 943 AKGSMVNANLISCNLGQQVLEGRRVPVMISGKTLPSFQPFETKIGAGGYVFGRFLTGIKP 1002
Query: 365 QEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRD-SDLSLIQVLYG 423
E++FH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL YD +VRD SD S++Q LYG
Sbjct: 1003 HEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKAEYDTSVRDTSDGSIVQFLYG 1062
Query: 424 EDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNF 483
EDGLD+TK+++L F+FL N I S +N
Sbjct: 1063 EDGLDITKQKHL--DSFTFLAQNYMSIVSQVNGVN------------------------- 1095
Query: 484 IFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFK-ACPQPLISTFQPDAHFGSISENLADS 542
+K + W + A KK +K K P ++ F P A++GS SE + +
Sbjct: 1096 ----DSSKVHNEEASNWTK---AAMKKIKKTGKIEAKDPALAHFPPGANYGSTSEKFSSA 1148
Query: 543 VVKYTKGRTDASHVDK-----------FYDMIFYKNLLSLANPGENVGVLAAQSIGEPST 591
+ KY K D DK F M+ K + S+ +PGE +G++A QS+GEPST
Sbjct: 1149 LKKYLKSNPDNLLKDKSTGEGEITKKAFTTMMNMKYMKSVIDPGEAIGIVAGQSVGEPST 1208
Query: 592 QMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAK 651
QMTLNTFH AG NVTLGIPRLREI+M A+ I TP+M + + E+ A AK
Sbjct: 1209 QMTLNTFHLAGHAAKNVTLGIPRLREIVMTASNHIMTPTMTLKL--NKQTDEETARLFAK 1266
Query: 652 SMTRITMADVLEKVKIKEWLEISPEPHMN-YQMKFCFIPAHMYRDKTSVKPSKIIDHFER 710
++T++T+A+V++K+K++E + Y ++ P+ Y + +++ + ++ E
Sbjct: 1267 TITKLTLAEVVDKLKVRERVTSQGSAKAKVYDIQIDLFPSEAYCAEYAIQVNDVLRTLEE 1326
Query: 711 KFLKEL----EVAIAKR----------AAQ---GLKNMNIEQSRDQ--MEDDVEDDEGEG 751
KF+ L E + KR AAQ G IE++R + +DD +D++ +
Sbjct: 1327 KFIPRLVKLTEAELKKRTSEKSLSSPSAAQPEIGASVGVIEEARREGGDDDDDDDEDLDD 1386
Query: 752 AEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNTSNI 811
A+ A ++ +S E DE + ++ E ++D E +D+ + + + D+ +++
Sbjct: 1387 AKRASSSRNNAGQASYEAPDEGEQEIIRRQDTPEPESDDEGTDDKPKAAPVDNSDSDTDM 1446
Query: 812 GERFKIEFRDSTNVFVKDVV-NQHNIVHKYSYDKKNHMWC-----------KLLFLP--- 856
+ + + N + + ++ + ++ ++ + C KLL LP
Sbjct: 1447 EDSGTFKAKKLANKDRAEALRGKYPSLTQFRFNPDDGSLCTIQLQYDISTPKLLLLPLVE 1506
Query: 857 ---------------SNLF---EEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHY 898
S + ++ E +H++ T+G+N+ + Y+ +++ + +Y N + +
Sbjct: 1507 NAARTSVIQFIPGLGSCAYIPADKGEPEHVI-TEGVNLLAMRDYQDIINPHSIYSNSVSH 1565
Query: 899 MASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNP 957
M S YG+EAA I+ EV VF +GI+VD RHL+L+AD MT +G Y NR GI + +
Sbjct: 1566 MLSLYGVEAARATIVSEVGAVFEGHGIKVDNRHLTLIADVMTQTGGYRPFNRMGIVKDST 1625
Query: 958 SFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
S + KM+FE + +R A ++ D+L PS+R+++G+ GTG F +
Sbjct: 1626 SPLMKMSFETTVRFLRDAVLERDWDNLNGPSSRIVVGRVGTVGTGAFDV 1674
>gi|403353481|gb|EJY76278.1| DNA-directed RNA polymerase [Oxytricha trifallax]
Length = 1815
Score = 565 bits (1455), Expect = e-158, Method: Compositional matrix adjust.
Identities = 378/1141 (33%), Positives = 573/1141 (50%), Gaps = 177/1141 (15%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S+ +EA LM QY+VP G P+ GLIQD V+SG L+ +DTFLT+ Y LVY
Sbjct: 700 SYLACSEAYKLMATHKQYIVPTSGKPIRGLIQDSVVSGVFLTSKDTFLTKETYQQLVYVG 759
Query: 69 LCILNTE-----IRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDK 123
L L E I TL P + KP+P WTGKQV+ST+I N+ ++ + + + LD
Sbjct: 760 LRELIEEDKIGKIFTLAPALLKPVPRWTGKQVISTIIKNIVNQE-MDYKINNITGLNLDS 818
Query: 124 K-QFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISL 182
K + ++G + + V R ELL G LDK QFG++++GLVH+ ++ +G+E A L
Sbjct: 819 KAKLSPKEWGSI-GQEEGDVVFRDNELLLGTLDKNQFGASEFGLVHSFYEIYGSEKAGEL 877
Query: 183 LSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLP---- 238
L+ LA++FTV+LQ GFT G+ D+++ E +++R II A + G EAA G+
Sbjct: 878 LTSLARIFTVFLQMHGFTCGLEDLMITPEFNKQRRLIIENAHKEGIEAAAKFCGIKNYIA 937
Query: 239 -----------------LDTDPE----------------------IISSQLQEAYAS--- 256
+D D E I +L+E S
Sbjct: 938 KEFNYSNRIVYQSGKNKIDQDIERFTNMAVPENPFKNKKIIQEDDPIRKRLEEKMNSADD 997
Query: 257 IPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQIS 316
+ A++D +S + + T+ I ++C+P+GL++ FP NN+ MV +GAKG VN QIS
Sbjct: 998 VQALDAELDNVMRSKMSQATSQILKICIPDGLVKRFPRNNISAMVLTGAKGGLVNMTQIS 1057
Query: 317 CLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGRE 376
CLLGQ ELEGKR M +G+TLP +LPY+ +PR+ G+V RF++G++PQ+F+FHCMAGRE
Sbjct: 1058 CLLGQQELEGKRVPKMQNGKTLPCYLPYDPNPRSSGYVTDRFISGLRPQDFYFHCMAGRE 1117
Query: 377 GLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLT 436
GLIDTAVKTSRSGYLQRCL+K LE L V+YDMTVRD+D S++Q LYGEDG+DV +YL
Sbjct: 1118 GLIDTAVKTSRSGYLQRCLIKQLESLVVNYDMTVRDNDGSIVQFLYGEDGIDVMNSKYL- 1176
Query: 437 DKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDL 496
++F FLE N + + ++++ + K K +P T +
Sbjct: 1177 -EKFDFLEKNFTSLITTYNGSEIMQRVDRNAVDDYKHKAKKVLKKMKKENPSITNHEL-- 1233
Query: 497 LEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKY---------- 546
K+YR P IS + P +FGSISE + + Y
Sbjct: 1234 ------------KRYRG------DPAISLYHPLKYFGSISEKMDSKLKSYLENDSMQQLT 1275
Query: 547 -------TKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFH 599
K + + D F M F K + S+ +PGENVG +A QS+GEPSTQMTLNTFH
Sbjct: 1276 AKMGNMAMKQKFEPIKGDTFKKMYFLKYMKSVVHPGENVGTIAGQSVGEPSTQMTLNTFH 1335
Query: 600 FAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMA 659
AG G N+TLGIPRL+EILM IKTP+M + F ++ ++ + A RI +
Sbjct: 1336 LAGHGAANMTLGIPRLKEILMTTPTNIKTPNMIVYFRRELSLIKTEMEMYANRYKRIKLC 1395
Query: 660 DVLEKVKIKEWLEISPEPHMN----YQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKE 715
DV +++K+ + EI+ + N Y + ++ ++ F +F+
Sbjct: 1396 DVTKELKVTQ--EIATDDSGNILRLYNITLQIESVRRIAKYLGLEFKDLVKVFSDQFIPL 1453
Query: 716 LEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGA-------ALGRVDVSSDE 768
L I K+ + S+DQ +DDV+ + G + + A G VD D
Sbjct: 1454 LMAEILKQLKKA--------SQDQGQDDVQTNPGTKSTLNASKITKKFKANGDVDEEFDV 1505
Query: 769 ERDEEDAVQSHKKVNQEEDND-------------------------------FEEPEDEE 797
+ ++E Q+ +K D +E+ ++E+
Sbjct: 1506 DNEDEIVKQASQKSKSSVKGDMNVDEDEDENEDEDDMMDIDGVEKKAKDIKGYEQEDEED 1565
Query: 798 RMSEREEDDNTSNIGERFKIE--FRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLF- 854
R R +N S ++ E N+ + + K Y+ M L F
Sbjct: 1566 RDFLRRSSNNRSESKQKEDEEKNMNYYCNILREKFSKYQGYIRKIGYEDDKSMTVTLGFP 1625
Query: 855 ------LPSNLFEEKESKHLLKT-----------------------DGINVNFISQYRHL 885
L + E+ +K L+++ G+N + +
Sbjct: 1626 LQFKKILMLTVAEQILAKVLVRSVSGIDNCILVTPDKANEEPYLLVQGLNFEAFYNDQDI 1685
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
D+N++ NDI + YG+EA +++EV+ VF +YGIEV+ RHLSL+ D++T++G Y
Sbjct: 1686 FDVNRIQSNDIWQIMKKYGVEAGCANLVKEVRQVFNMYGIEVNYRHLSLIGDFITNNGEY 1745
Query: 946 VAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQ 1005
A NR G+ + S KM+FE ++ + + +Q D L P++ ++LGQ + GTG+F
Sbjct: 1746 RAFNRIGMEESSSPFLKMSFETTMKYLVASCVQKDTDDLSTPASALVLGQVPKVGTGIFD 1805
Query: 1006 L 1006
+
Sbjct: 1806 I 1806
>gi|226289059|gb|EEH44571.1| DNA-directed RNA polymerase I subunit RPA1 [Paracoccidioides
brasiliensis Pb18]
Length = 1691
Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust.
Identities = 387/1086 (35%), Positives = 563/1086 (51%), Gaps = 147/1086 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA L + QYL G PL GLIQDH+ G + RDTF + +Y L+Y L
Sbjct: 656 RAEAMQLADTDHQYLSATSGKPLRGLIQDHISMGVWFTSRDTFFDKEDYHQLLYSCLRPE 715
Query: 73 NT-----EIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
N+ +I L P I +P LWTGKQV+ST+++N+TP I HG L+G K
Sbjct: 716 NSHTIIDKIVLLEPAIQRPQKLWTGKQVISTIMLNITP----IKFHGLNLTG---KSSTR 768
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
+G + V + GELL GILDK Q G + GL+H+V + +G A L+ +
Sbjct: 769 GDCWG--KGSEEGQVIFQDGELLCGILDKAQLGPSPSGLIHSVHELYGHVVAGKLIGIIG 826
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL---PLDTDPE 244
+L T +L FT G+ D+ + ++ D R I+ +A LG + A + L P+D +
Sbjct: 827 RLLTKFLHMRAFTCGMDDLRLTKKGDEDRKMILQEAESLGRQIALKYVTLDINPVDDEEA 886
Query: 245 IISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESG 304
+ +L++A + +A +D Y S V++ I+ CLP GL +PFP N +Q M SG
Sbjct: 887 ELKRRLEDALRD-DEKQAGLDAVYSSQAATVSSEISAACLPLGLEKPFPWNQMQAMTTSG 945
Query: 305 AKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQP 364
AKG+ VN ISC LGQ LEG+R +M+SG+TLPSF P+E S AGG++ GRF+TGI+P
Sbjct: 946 AKGTVVNANLISCNLGQQILEGRRVPVMISGKTLPSFKPFETSLMAGGYISGRFLTGIKP 1005
Query: 365 QEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRD-SDLSLIQVLYG 423
QE++FH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL YD +VR+ +D S+IQ LYG
Sbjct: 1006 QEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKAEYDNSVRETTDGSVIQFLYG 1065
Query: 424 EDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNF 483
EDGL++TK+++L D FSFL N Y +L L +G F
Sbjct: 1066 EDGLEITKQKHLQD--FSFLAQN------YWTVLEEL-----------------NGSDEF 1100
Query: 484 IFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKA-CPQPLISTFQPDAHFGSISENLADS 542
T+ D +W + A KK+RK K C P +S F P + +GS SE A +
Sbjct: 1101 ------TRIGSDAAAEW---NRNAVKKFRKTRKLDCVDPALSLFAPGSCYGSTSETFAMA 1151
Query: 543 VVKYTKGRTDASHVDK-----------FYDMIFYKNLLSLANPGENVGVLAAQSIGEPST 591
+ KY K D +K F ++ K + S+ PGE+VG++A QSIGEPST
Sbjct: 1152 LRKYQKENPDKQLREKGKVEDGISKGSFAKVMNMKYMRSVVEPGESVGIVAGQSIGEPST 1211
Query: 592 QMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAK 651
QMTLNTFH AG NVTLGIPRLREI+M A+ I TP+M F + + +++ AK
Sbjct: 1212 QMTLNTFHLAGHSTKNVTLGIPRLREIVMTASSQILTPTMTAIFHRSLSERDRRM--FAK 1269
Query: 652 SMTRITMADVLEKVKIKEWLEISP--EPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFE 709
++R+++A+V++ +++ E + Y ++ F P Y ++ +++ I+ +
Sbjct: 1270 GISRLSLAEVVDSLRVHERISSGSGRAKAKIYDLEIDFFPPEEYTEEYAIQIEDILKTLQ 1329
Query: 710 RKFLKELEVAIAKRAAQGLKNMNIEQSRDQ--------------MEDDVEDDEGE----- 750
F+ L K LK +E+S ME+ + E
Sbjct: 1330 NTFVPRL----VKLTRAELKRRTVEKSLSTFSAAQPDIGVSARVMEEPMRRFGREARDAD 1385
Query: 751 -------------GAEGAGAALGRVDVSSDEERD--EEDAVQSHKKVNQEEDNDFEEPED 795
A+ A A + R + S E D EED ++ QE D+D E D
Sbjct: 1386 ADTNDDDDSEDQDDAKRAMAHMNRSNQVSYEAPDEGEEDIIRGQD--TQELDSDDETDGD 1443
Query: 796 EE-RMSEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC---- 850
+ + REE D G+ +E + V+ ++ V K+ + KN C
Sbjct: 1444 RQGAAASREEVDMEGTDGDS-DLEKIQKSKESENTVIGKYTEVTKFKFSLKNGKSCHIQL 1502
Query: 851 -------KLLFLPSNLFEEKESKHLLK----------------------TDGINVNFISQ 881
KLL LP L E+ L++ TDG+N+ + +
Sbjct: 1503 QYDISIPKLLLLP--LVEDAARTSLIQNIPRLGICTYVESDKDNPAHVITDGVNLLAMRE 1560
Query: 882 YRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 941
Y+H+++ + LY N I M YG+EAA IIRE+ VF + I VD RHL+L+ D MTH
Sbjct: 1561 YQHIVNPHTLYTNSIADMLVWYGVEAARASIIREMATVFDSHSISVDNRHLNLIGDVMTH 1620
Query: 942 SGTYVAMNRNG-IRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQG 1000
+G + A NR G ++ N S + KM+FE + +R A ++ D+L PS R+++G+ G
Sbjct: 1621 AGGFRAFNRMGLVKDNTSPLMKMSFETTVGFLRDAVLERDWDNLNGPSGRIVMGRVGTVG 1680
Query: 1001 TGLFQL 1006
TG F +
Sbjct: 1681 TGAFDV 1686
>gi|393216084|gb|EJD01575.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Fomitiporia mediterranea MF3/22]
Length = 1706
Score = 563 bits (1451), Expect = e-157, Method: Compositional matrix adjust.
Identities = 382/1096 (34%), Positives = 553/1096 (50%), Gaps = 167/1096 (15%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCI- 71
++EA F+ N +QYLVP G PL GLIQDHV++G ++ RDTF +R EY L+Y AL
Sbjct: 671 RSEAMFIANTDNQYLVPTSGKPLRGLIQDHVVAGVWMTSRDTFFSREEYFQLLYGALRPE 730
Query: 72 --LNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGST 129
+ +RTLPPTIWKP+PLWTGKQ++ST+++N+TP + + K +
Sbjct: 731 EQTDGRLRTLPPTIWKPVPLWTGKQIISTILLNITPSAAQGL-------NLTSKAKVSGD 783
Query: 130 QYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKL 189
+G + V + GELL GILDK QFG+T YGLVH+ ++ +GA+ A LL L++L
Sbjct: 784 LWG--KGSEEGRVVVMDGELLCGILDKSQFGATDYGLVHSCYELYGADIAGRLLGILSRL 841
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
T +LQ FT + D+ + D +R ++ K + LG E A P + +
Sbjct: 842 LTKFLQHRAFTCRMDDLTLTALGDSQRRSLLQKGKNLGQEGAEENF-------PSLATMP 894
Query: 250 LQEAYASIPQF----------RAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQF 299
+ E ++ F A +D K L +T +I C+P GL FP N++Q
Sbjct: 895 VSEKKGALRAFLRDVLRDDAKMAGLDVTVKKKLAGLTKSIADACMPHGLSRKFPHNHMQM 954
Query: 300 MVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFM 359
M +SGAKGS VN QISC LGQ ELEG+R +M+SG+TLPSF +E + AGG+V RF+
Sbjct: 955 MTQSGAKGSAVNAQQISCALGQQELEGRRVPVMISGKTLPSFKAFETAAIAGGYVASRFL 1014
Query: 360 TGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQ 419
TG++PQEF+FHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEG+ VHYD TVR SD S++Q
Sbjct: 1015 TGVKPQEFYFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGIRVHYDNTVRASDSSILQ 1074
Query: 420 VLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSG 479
YG D LDVT++++LT QF F N + L+ + ++
Sbjct: 1075 FHYGGDCLDVTRQKHLT--QFEFAARNERS---------------------LVASLRTPS 1111
Query: 480 KPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQ--PLISTFQPDAHFGSISE 537
+F + K D L KY +K K + P +S + P + G+ SE
Sbjct: 1112 VDHFDDNEGAIKHMKDAL------------KYLRKPKKGKKLDPAMSVYNPSRNIGATSE 1159
Query: 538 NLADSVVKYTKGRTDASHVDK-------------------FYDMIFYKNLLSLANPGENV 578
A V +Y K D DK F ++ K + S+ +PGE V
Sbjct: 1160 KFAQKVEEYIKSNPDHMLKDKNAEAPLWLSKSRKGISHKMFRMLMNVKYMRSMVDPGEAV 1219
Query: 579 GVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPD 638
G+LA+Q +GEPSTQMTLNTFHFAG G NVTLGIPRLREI+M A+ KTPSM +
Sbjct: 1220 GLLASQGVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTASTKPKTPSMTMRVCAG 1279
Query: 639 MPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCFIPAHMYRDKTS 698
+K K +R+ ++ +++KV++ E L + + + F P YR++
Sbjct: 1280 AD--DKLIKSFCKRASRLALSQIVDKVEVNEKLART--RRRQFSVAISFYPKDEYREEYD 1335
Query: 699 VKPSKIIDHFERKF----LKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEG 754
++P +I+ F F +E+++ + K A L+ E R + E V + EG E
Sbjct: 1336 LEPLEILPAFGVAFPQILRREIQLELKKLKAD-LRTHLSEVGRGRTEPQVGANP-EGDEA 1393
Query: 755 AGAALGRVDVSSD--------EERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDD 806
A D SS+ E+R + Q+ + ++EED+ E +D +E E
Sbjct: 1394 NANATAVNDDSSEIGDGDADAEKRARQTKQQATYESDEEEDSPSGEFDDAALEAEFNESA 1453
Query: 807 N--------------TSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKL 852
+ T G+ K + + N F N+ S+ +
Sbjct: 1454 DSPDSDDDAMDVDDLTEVDGQSIKDKISEVRNTFFL------NLKSASSFKFSDSGVSFD 1507
Query: 853 LFLPSN--------LFEEKESKHLLK-TDGINVNFISQYRHLLDLNKLYVNDIHY----- 898
L PS+ L E+ +K +++ GI F+S+ KL N ++
Sbjct: 1508 LEFPSDQPKLLLVGLVEKACNKTIVREISGIADVFLSKDEGKDKQFKLVTNGSNFQGMWR 1567
Query: 899 MASTYGIEAANRVIIREVKNVFA--------VYGIE--------------------VDPR 930
A+ + E+ V+ E+ +++A YG+E VD R
Sbjct: 1568 FANAFEEESGEPVV--ELNDIYANDIYAGLVAYGVEMARALILKEIQNVFGAYNIDVDIR 1625
Query: 931 HLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSAR 990
HL L+ADYMT G Y NR GI NPS + K ++E I A++ G D LR PS
Sbjct: 1626 HLELIADYMTFDGGYKPFNRKGISTNPSPLLKASYETTAAFISDATLHGDFDDLRTPSGN 1685
Query: 991 VMLGQECRQGTGLFQL 1006
++LG+ GTG+F +
Sbjct: 1686 IVLGRPSLSGTGVFDI 1701
>gi|225681892|gb|EEH20176.1| DNA-directed RNA polymerase I subunit RPA1 [Paracoccidioides
brasiliensis Pb03]
Length = 1691
Score = 563 bits (1450), Expect = e-157, Method: Compositional matrix adjust.
Identities = 389/1090 (35%), Positives = 566/1090 (51%), Gaps = 155/1090 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA L + QYL G PL GLIQDH+ G + RDTF + +Y L+Y L
Sbjct: 656 RAEAMQLADTDHQYLSATSGKPLRGLIQDHISMGVWFTSRDTFFDKEDYHQLLYSCLRPE 715
Query: 73 NT-----EIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
N+ +I L P I +P LWTGKQV+ST+++N+TP I HG L+G K
Sbjct: 716 NSHTIIDKIVLLEPAIQRPQKLWTGKQVISTIMLNITP----IKFHGLNLTG---KSSTR 768
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
+G + V + GELL GILDK Q G + GL+H+V + +G A L+ +
Sbjct: 769 GDCWG--KGSEEGQVIFQDGELLCGILDKAQLGPSPSGLIHSVHELYGHVVAGKLIGIIG 826
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL---PLDTDPE 244
+L T +L FT G+ D+ + ++ D R I+ +A LG + A + L P+D +
Sbjct: 827 RLLTKFLHMRAFTCGMDDLRLTKKGDEDRKMILQEAESLGRQIALKYVTLDINPVDDEEA 886
Query: 245 IISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESG 304
+ +L++A + +A +D Y S V++ I+ CLP GL +PFP N +Q M SG
Sbjct: 887 ELKRRLEDALRD-DEKQAGLDAVYSSQAATVSSEISAACLPLGLEKPFPWNQMQAMTTSG 945
Query: 305 AKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQP 364
AKG+ VN ISC LGQ LEG+R +M+SG+TLPSF P+E S AGG++ GRF+TGI+P
Sbjct: 946 AKGTVVNANLISCNLGQQILEGRRVPVMISGKTLPSFKPFETSLMAGGYISGRFLTGIKP 1005
Query: 365 QEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRD-SDLSLIQVLYG 423
QE++FH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL YD +VR+ +D S+IQ LYG
Sbjct: 1006 QEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKAEYDNSVRETTDGSVIQFLYG 1065
Query: 424 EDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNF 483
EDGL++TK+++L D FSFL N Y +L L +G F
Sbjct: 1066 EDGLEITKQKHLQD--FSFLAQN------YWTVLEEL-----------------NGSDEF 1100
Query: 484 IFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKA-CPQPLISTFQPDAHFGSISENLADS 542
T+ D +W + A KK+RK K C P +S F P + +GS SE A +
Sbjct: 1101 ------TRIGSDAAAEW---NRNAVKKFRKTRKLDCVDPALSLFAPGSCYGSTSETFAMA 1151
Query: 543 VVKYTKGRTDASHVDK-----------FYDMIFYKNLLSLANPGENVGVLAAQSIGEPST 591
+ KY K D +K F ++ K + S+ PGE+VG++A QSIGEPST
Sbjct: 1152 LRKYQKENPDKQLREKGKVEDGISKGSFAKVMNMKYMRSVVEPGESVGIVAGQSIGEPST 1211
Query: 592 QMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAK 651
QMTLNTFH AG NVTLGIPRLREI+M A+ I TP+M F + + +++ AK
Sbjct: 1212 QMTLNTFHLAGHSTKNVTLGIPRLREIVMTASSQILTPTMTAIFHRSLSERDRRM--FAK 1269
Query: 652 SMTRITMADVLEKVKIKEWLEISP--EPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFE 709
++R+++A+V++ +++ E + Y ++ F P Y ++ +++ I+ +
Sbjct: 1270 GISRLSLAEVVDSLRVHERISSGSGRAKAKIYDLEIDFFPPEEYTEEYAIQIEDILKTLQ 1329
Query: 710 RKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGA----------------- 752
F+ L K LK +E+S + D G A
Sbjct: 1330 NTFVPRL----VKLTRAELKRRTVEKSLSTFS-AAQPDIGVSARVMEEPMRRFGREARDA 1384
Query: 753 ----------------EGAGAALGRVDVSSDEERD--EEDAVQSHKKVNQEEDNDFEEPE 794
+ A A + R + S E D EED ++ QE D+D E
Sbjct: 1385 DADTNDDDDAEDQDDAKRAMAHMNRSNQVSYEAPDEGEEDIIRGQD--TQELDSDDETDG 1442
Query: 795 DEE-RMSEREEDD--NTSNIGERFKIE-FRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC 850
D + + REE D +T + KI+ ++S N V+ ++ V K+ + KN C
Sbjct: 1443 DRQGAAASREEVDMEDTDGDSDLEKIQKSKESENT----VIGKYTEVTKFKFSLKNGKSC 1498
Query: 851 -----------KLLFLPSNLFEEKESKHLLK----------------------TDGINVN 877
KLL LP L E+ L++ TDG+N+
Sbjct: 1499 HIQLQYDISIPKLLLLP--LVEDAARTSLIQNIPRLGICTYVESDKDNPAHVITDGVNLL 1556
Query: 878 FISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVAD 937
+ +Y+H+++ + LY N I M YG+EAA IIRE+ VF + I VD RHL+L+ D
Sbjct: 1557 AMREYQHIVNPHTLYTNSIADMLVWYGVEAARASIIREMATVFDSHSISVDNRHLNLIGD 1616
Query: 938 YMTHSGTYVAMNRNG-IRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQE 996
MTH+G + A NR G ++ N S + KM+FE + +R A ++ D+L PS R+++G+
Sbjct: 1617 VMTHAGGFRAFNRMGLVKDNTSPLMKMSFETTVGFLRDAVLERDWDNLNGPSGRIVMGRV 1676
Query: 997 CRQGTGLFQL 1006
GTG F +
Sbjct: 1677 GTVGTGAFDV 1686
>gi|258563376|ref|XP_002582433.1| hypothetical protein UREG_07206 [Uncinocarpus reesii 1704]
gi|237907940|gb|EEP82341.1| hypothetical protein UREG_07206 [Uncinocarpus reesii 1704]
Length = 1666
Score = 562 bits (1449), Expect = e-157, Method: Compositional matrix adjust.
Identities = 380/1080 (35%), Positives = 569/1080 (52%), Gaps = 141/1080 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA L + QYLV G PL GLIQDH+ G S RD+ +Y L+Y L
Sbjct: 637 RAEAMQLADTDHQYLVATSGQPLRGLIQDHISIGTWFSSRDSLFDEEDYHQLLYSCLRPE 696
Query: 73 NT-----EIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
N+ +I +PP I KP P WTGKQV+ST++ N+TP+ + + ++ K
Sbjct: 697 NSHTVGEKIELMPPAIIKPEPRWTGKQVISTILQNVTPESRAGL-------NLVGKSSTP 749
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
+ ++G + V + GELL GILDK Q GS+ GL+H+V + +G A L+ L
Sbjct: 750 ADRWG--KDSEEGQVIFKDGELLCGILDKAQLGSSPGGLIHSVHEVYGHIVAGKLIGILG 807
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL---PLDTDPE 244
+L T +LQ F+ G+ D+ + ++ D R + LG E A + L P++
Sbjct: 808 RLLTRFLQMRAFSCGMDDLRLTKQGDEDRKNQLKAGDNLGHEVALKYVLLDESPIEDKDA 867
Query: 245 IISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESG 304
+ +L+E + +A +D + S K++++I CLP GL +PFP N +Q M S
Sbjct: 868 ELQRRLEEVLRDDDK-QAGLDSMFNSRTVKLSSDITSACLPRGLEKPFPWNQMQTMTVSR 926
Query: 305 AKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQP 364
AKGS VN ISC LGQ LEG+R +M+SG+TLPSF PYE AGG+V GRF+TGI+P
Sbjct: 927 AKGSMVNANLISCNLGQQVLEGRRVPVMISGKTLPSFRPYETKLIAGGYVSGRFLTGIKP 986
Query: 365 QEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRD-SDLSLIQVLYG 423
QE++FH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL YD +VRD +D +L+Q LYG
Sbjct: 987 QEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLRAEYDNSVRDTTDGTLVQFLYG 1046
Query: 424 EDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNF 483
EDGLD+TK+++L D FSFL N I S + +G F
Sbjct: 1047 EDGLDITKQKHLQD--FSFLAQNYFSIYS-----------------------QVNGMNEF 1081
Query: 484 IFSPHRTKFTMDLLEQWYQLDDKARKKYRK--KFKACPQPLISTFQPDAHFGSISENLAD 541
K ++ +W + A KK +K +F A P+++ + P A+FGS SE+ A
Sbjct: 1082 ------NKVNSEVASKW---NKSAMKKVKKTGQFDA-KDPVLAHYHPGANFGSTSESFAV 1131
Query: 542 SVVKYTKGRTDASHVDK-----------FYDMIFYKNLLSLANPGENVGVLAAQSIGEPS 590
++ +Y K D DK F ++ K + ++ +PGE VG++A QS+GEPS
Sbjct: 1132 ALKEYEKANPDKLLRDKGQGIDGIAKKDFEHIMNLKYMRAVVDPGEAVGIVAGQSVGEPS 1191
Query: 591 TQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLA 650
TQMTLNTFH AG NVTLGIPRLREI+M A+ I TP+M F + EK A
Sbjct: 1192 TQMTLNTFHLAGHSAKNVTLGIPRLREIVMTASAQISTPTMSANFHGQVS--EKDRELFA 1249
Query: 651 KSMTRITMADVLEKVKIKEWLEISPEPHMN-YQMKFCFIPAHMYRDKTSVKPSKIIDHFE 709
K ++R+T+A+V++K+ + E + + Y + Y + ++K +++ E
Sbjct: 1250 KGISRLTLAEVIDKLSVHERVLTQGKVKAKIYDIHIDLFSPEEYTQEYAIKVGDVLETLE 1309
Query: 710 RKFLKELEVAIAKRAAQGLKNMNIEQSRDQM---EDDVEDDEGEGAEGAGAALGR-VDVS 765
++F+ +L K LK E+S + + ++ G EG GR
Sbjct: 1310 KRFVPKL----LKMTTAELKKRTSEKSLSKFSAAQPEIGASVGVVEEGPRHGEGREDADG 1365
Query: 766 SDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNTSNIGERFK--------- 816
DE+ D +DA ++ N+ +E P+++++ R +D E
Sbjct: 1366 DDEDEDPDDAKRARSSQNRSNQVSYEAPDEDDQDVIRRQDTPEPESDEDEDEKSKERQQR 1425
Query: 817 --------IEFRDSTNV---------FVKDVVNQHNIVHKYSYDKKNHMWC--------- 850
+E RD+++ F++D +H V ++ ++ K C
Sbjct: 1426 REKPGDEDVEMRDASDSEDDSKEREEFLRD---KHAEVTRFKFNPKKGTSCVIQLQYDVS 1482
Query: 851 --KLLFLP------------------SNLFEEKESK---HLLKTDGINVNFISQYRHLLD 887
KLL LP S + +E+K H+L TDG+N+ + Y+H+++
Sbjct: 1483 TPKLLLLPLVESAARAAVIQFIPGLGSCTYVPEETKVPAHVL-TDGVNLLAMRDYQHIIN 1541
Query: 888 LNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVA 947
L+ LY N IH+M + YG+EAA I+RE+ +VF + I VD RHL+L+ D MT SG Y
Sbjct: 1542 LHTLYSNSIHHMLTFYGVEAARASIVREMDSVFKSHSIAVDNRHLNLIGDVMTQSGGYRP 1601
Query: 948 MNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
NR GI + + S + KM+FE + +R A ++ D+L APS+R+++G+ GTG F +
Sbjct: 1602 FNRMGIVKDSTSPLTKMSFETTVRFLRDAVLERDWDNLAAPSSRIVMGRVSTVGTGSFDV 1661
>gi|115492103|ref|XP_001210679.1| hypothetical protein ATEG_00593 [Aspergillus terreus NIH2624]
gi|114197539|gb|EAU39239.1| hypothetical protein ATEG_00593 [Aspergillus terreus NIH2624]
Length = 1691
Score = 561 bits (1447), Expect = e-157, Method: Compositional matrix adjust.
Identities = 374/1077 (34%), Positives = 576/1077 (53%), Gaps = 132/1077 (12%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
+ +AEA L + QYLV G PL GLIQDH+ G + RD+F +Y L+Y
Sbjct: 663 NELARAEAMMLADADHQYLVATSGKPLRGLIQDHISMGTWFTCRDSFFDEEDYHELLYSC 722
Query: 69 L-----CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDK 123
L ++ I+ + PT+ KP LWTGKQ+++T++ N+ P ++ + + K
Sbjct: 723 LRPENAHTISDRIQLVGPTVIKPKRLWTGKQIITTILKNIMPSERAGLN-------LKSK 775
Query: 124 KQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLL 183
++G + D V + GE+L GILDKKQ G T GL+ ++ + +G A L+
Sbjct: 776 SSTPGDRWGKGNEEGD--VIFKDGEMLCGILDKKQIGPTAGGLIDSIHEIYGHTIAGKLI 833
Query: 184 SCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDP 243
L +L T +L FT G+ D+ + +E DR R + +++A ++G E A + L T P
Sbjct: 834 GILGRLLTRFLNMRAFTCGIDDLRLTKEGDRVRKEKLSQAPKIGREVALKYVTLDQTTVP 893
Query: 244 EIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNN--------INQVCLPEGLIEPFPAN 295
++ ++L+ + + D + +S LD VTN+ I + CLP GL++PFP N
Sbjct: 894 DL-DAELRRRMEEVLR-----DDEKQSGLDSVTNSQTAKLSTEITKACLPGGLVKPFPWN 947
Query: 296 NLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVD 355
+Q M SGAKGS+VN ISC LGQ LEG+R +M+SG+TLPSF ++ +P AGG+V
Sbjct: 948 QMQSMTISGAKGSSVNANLISCNLGQQVLEGRRVPVMISGKTLPSFRAFDTNPMAGGYVS 1007
Query: 356 GRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRD-SD 414
GRF+TGI+PQE++FH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL YD +VR+ SD
Sbjct: 1008 GRFLTGIKPQEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLRAEYDTSVREASD 1067
Query: 415 LSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLT 474
S+IQ LYGEDGLD+TK+ L K+F FL N K I S +NL +
Sbjct: 1068 GSIIQFLYGEDGLDITKQVQL--KRFDFLASNHKSIMSQ---VNLRSDY----------- 1111
Query: 475 FKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKA-CPQPLISTFQPDAHFG 533
+ + W++ A KK RK K P+++ + P + G
Sbjct: 1112 ---------------HNLEKEEVANWHK---DAMKKVRKSGKVDAMDPVLAHYHPGGNLG 1153
Query: 534 SISENLADSVVKYTKGRTDASHVDK------------FYDMIFYKNLLSLANPGENVGVL 581
S+SE + ++ KY D DK F ++ K L S+ +PGE VG++
Sbjct: 1154 SVSEAFSQALKKYEDENKDGYLKDKKKGVDGFLSKKAFDTLMNMKYLKSVVDPGEAVGIV 1213
Query: 582 AAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPK 641
A+QSIGEPSTQMTLNTFH AG NVTLGIPRLREI+M A+ I TP+M + ++ K
Sbjct: 1214 ASQSIGEPSTQMTLNTFHLAGHSAKNVTLGIPRLREIVMTASANIMTPTMTLVLNEELSK 1273
Query: 642 LEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCFIPAHMYRDKTSVKP 701
+ + R AK+++++++A+V++KV+I+E + Y ++ F PA Y + ++K
Sbjct: 1274 --EHSERFAKAISKLSIAEVVDKVQIRERISSGSTKAKIYDIEVTFFPADEYCAEYAIKV 1331
Query: 702 SKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGR 761
+ + + KF+ +L V + + + ++ +S + ++ G E A G
Sbjct: 1332 KDVQNTLQNKFIPKL-VKLTRAELKKRQDEKALKSYSTAQPEIGVSVGTVQEAPRAPEGA 1390
Query: 762 VD-VSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNTSNIGERFKIEFR 820
D D+E DE+DA ++ N+ +E PE+EE +++D + + + R
Sbjct: 1391 NDPADDDDEEDEDDAKRARGAQNRSNQVSYEGPEEEEMEMVQQQDAPEDDDEDEAPKQQR 1450
Query: 821 D----------------STNVFVKDVVNQHNIVHKYSYDKKNHMWC-----------KLL 853
D T + +D+ N+ + V ++ +D K C KLL
Sbjct: 1451 DVEMEDASDDDSDEETKDTKLREEDIRNKFHEVTQFKFDPKKGNSCTVQLQYDIATPKLL 1510
Query: 854 FLP-------------------SNLFEEKESK----HLLKTDGINVNFISQYRHLLDLNK 890
LP E E+K H++ T+G+N+ + Y+ ++ +
Sbjct: 1511 VLPLVETAARAAVIQSIPGLGNCTYVEADEAKGEPAHVI-TEGVNLLAMRDYQDIIKPHS 1569
Query: 891 LYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNR 950
LY N IH+M YG+EAA I+RE+ +VF + I VD RHL+L+ D MT SG + A NR
Sbjct: 1570 LYTNSIHHMLQFYGVEAARASIVREMSDVFEGHSISVDNRHLNLIGDVMTQSGGFRAFNR 1629
Query: 951 NG-IRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
NG ++ S KM+FE + +++A ++ D+LR+PS+R+++G+ GTG F +
Sbjct: 1630 NGLVKDGTSPFAKMSFETTVGFLKEAVIERDFDNLRSPSSRIVVGRPGIVGTGAFDV 1686
>gi|398396432|ref|XP_003851674.1| hypothetical protein MYCGRDRAFT_94196 [Zymoseptoria tritici IPO323]
gi|339471554|gb|EGP86650.1| hypothetical protein MYCGRDRAFT_94196 [Zymoseptoria tritici IPO323]
Length = 1722
Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust.
Identities = 369/1086 (33%), Positives = 552/1086 (50%), Gaps = 164/1086 (15%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
+ +AEA + + QYL G+PL GLIQDH+ L+ R+ F R +YMNL+Y A
Sbjct: 655 NELARAEALSIADTDHQYLSATAGNPLRGLIQDHISMCVWLTSRELFFERGDYMNLLYAA 714
Query: 69 L------CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILD 122
L C N + T+PP I KP LWTGKQV+STV+ NLTP G L +
Sbjct: 715 LRPESGHCA-NDRLETMPPAIMKPKALWTGKQVISTVLKNLTPP-------GCLGLTVNG 766
Query: 123 KKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISL 182
K T +G + V ++ GELL GI+DKKQ G + GLV+A+++ +G A
Sbjct: 767 KSTTAKTMWG-PGGEEEGDVVVKDGELLQGIIDKKQIGPSSGGLVNAIYEAYGHAVAGKF 825
Query: 183 LSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTD 242
LS L +L T L F+ GV D++ Q+ + R + + A+ +G E + +GL D
Sbjct: 826 LSVLGRLLTKLLHMRAFSCGVEDLIFTQKGEEDRRQALAGAQSIGLEVSAKYVGLA-DQK 884
Query: 243 PEIISSQLQEAYASIPQFRAQ---IDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQF 299
P +LQ+ + + A+ +D+ + K+++ +++ C+P GL +PFP N +Q
Sbjct: 885 PTGEDRELQQRLEDVLRDDAKQHGLDQVTNNATGKISSGVSEKCMPAGLAKPFPKNQMQT 944
Query: 300 MVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFM 359
M SGAKGS VN ISC LGQ LEG+R +MVSG+TLP F P+E + RAGG++ RF+
Sbjct: 945 MTTSGAKGSKVNVNLISCALGQQVLEGRRVPIMVSGKTLPCFKPFESNVRAGGYIVDRFL 1004
Query: 360 TGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDS-DLSLI 418
TGI+PQE++FH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL V YD +VR++ D S++
Sbjct: 1005 TGIRPQEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKVEYDTSVRNTEDGSIV 1064
Query: 419 QVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSS 478
Q LYGEDGLD+ K +YL+D F F +N Y + N L+ + +L
Sbjct: 1065 QFLYGEDGLDIGKAKYLSD--FKFAAEN------YISLYNNLEMNDNMASL--------- 1107
Query: 479 GKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFK-ACPQPLISTFQPDAHFGSISE 537
+ E+ + + A KKYRK P ++ + P H GSISE
Sbjct: 1108 -----------------ISEEAKEHNKAAEKKYRKTGDLGASDPALAVYPPARHAGSISE 1150
Query: 538 NLADSVVKYTKGRTDASHVDK--------------FYDMIFYKNLLSLANPGENVGVLAA 583
L + + T+ DK F ++ + L S+ GE VGV+A
Sbjct: 1151 KLLATSRSWVDTNTERLIKDKKHGIDGPRTVSKKNFNAILEMRYLRSIVETGEAVGVVAG 1210
Query: 584 QSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLE 643
QS+GEPSTQMTLNTFH AG NVTLGIPRLREI+M A + TP+M + D+
Sbjct: 1211 QSVGEPSTQMTLNTFHLAGHAAKNVTLGIPRLREIVMTAATNLATPTMTLRLNDDVDV-- 1268
Query: 644 KKANRLAKSMTRITMADVLEKVKIKEWL--EISPEPHMNYQMKFCFIPAHMYRDKTSVKP 701
+ A + AK ++++++ ++++KV + E ++ Y++K F PA Y + ++
Sbjct: 1269 EGAKKFAKGISKLSLGEIVDKVSVTESTGKGVAYAEAKRYEIKLDFFPAEEYSKEYAITI 1328
Query: 702 SKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGR 761
S +++ E + L L+ K LK ++ +DD D G+ A R
Sbjct: 1329 SDVVNTIEHRLLPRLQATTRKE----LKKRGDAKTLKTAKDDAMPDIGKSAGAIEQESNR 1384
Query: 762 VDVSSDEERDE----------EDAVQSHKKVNQEEDNDFEEPEDEERMSEREE------- 804
+ + + D+ D ++S+K Q+ + E EDE+ + +R+
Sbjct: 1385 PEANREGGDDDSDSEGDDDATRDKMKSNK---QQAGYEAYEDEDEQVLKQRDATPEPEES 1441
Query: 805 -----------------DDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNH 847
+D++ + E R ++ D++ +S+D K
Sbjct: 1442 SDEDEAYGGSPRSTPDVEDSSPRVSSAKDREIRIKSDAKTNDII-------AFSFDDKKG 1494
Query: 848 MWC-----------KLLFLPSNLFE-------------------EKESKHLLKTDGI--- 874
C K+L L +L E ++E+ + K DGI
Sbjct: 1495 ATCSFTLEYDSATAKILML--HLLESALHASLIQSVPGIAMCMIDEEAMNEAKKDGIHSD 1552
Query: 875 --------NVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIE 926
N+ + + +H++ + LY N IH + YG+EAA I++E+ VF +GI
Sbjct: 1553 AILAASGVNIPAMWELQHIIHPHHLYTNSIHDILVHYGVEAARNAIVKELAGVFGGHGIS 1612
Query: 927 VDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRA 986
VDPRHL L+ADYMT G Y A +R G R NPS KM+FE + +R A ++G D+
Sbjct: 1613 VDPRHLMLIADYMTRDGVYQAFSRMGYRGNPSPFMKMSFETTVNFLRDAVLEGEGDNFAG 1672
Query: 987 PSARVM 992
PSAR++
Sbjct: 1673 PSARIV 1678
>gi|310798568|gb|EFQ33461.1| RNA polymerase Rpb1 [Glomerella graminicola M1.001]
Length = 1707
Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust.
Identities = 381/1092 (34%), Positives = 547/1092 (50%), Gaps = 155/1092 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL--- 69
+AEA + + QYL G PL GLIQDH+ L +DTF R Y L+Y AL
Sbjct: 659 RAEALQIADTDHQYLSGTAGKPLRGLIQDHLSVSVALCNKDTFFDRDSYQQLIYSALRPE 718
Query: 70 --CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
IL I LPP + KP P WTGKQV+ST++ N+ P + G ++G K Q
Sbjct: 719 SGHILGERIELLPPAVIKPRPRWTGKQVISTILKNIKPPNG----EGLWMAG---KCQVK 771
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
Q+G H V + V + G+ L+GILDK G + GL+H++ + +G A LLS +
Sbjct: 772 GEQWGKSH-VEEGSVLFQDGQFLTGILDKAHLGPSSGGLIHSIHEIYGPAVAGKLLSGMG 830
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL----PLDTDP 243
+L T YL FT G+ D+ + E ++ R + + AR +G E A + L P TDP
Sbjct: 831 RLLTRYLNMRAFTCGMDDLRLTSEGEQARREALKAARTIGLEVAAKYVSLEDKAPNSTDP 890
Query: 244 EIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVES 303
E++ +L+E + + +D V++ + CLP GL++ FP N +Q M S
Sbjct: 891 ELLI-RLEEVMRDDTK-QEGLDMLMNQSSGMVSSAVTTACLPVGLVKQFPKNQMQSMTTS 948
Query: 304 GAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQ 363
GAKGS VN ISC LGQ LEG+R +MVSG++LP F P+E RAGG++ RF+TGI+
Sbjct: 949 GAKGSQVNANLISCNLGQQVLEGRRVPLMVSGKSLPCFKPFETDVRAGGYIVQRFLTGIR 1008
Query: 364 PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYG 423
PQE++FH MAGREGLIDTAVKTSRSGYLQRC++K +EGLTV YD TVRD+D +L+Q LYG
Sbjct: 1009 PQEYYFHHMAGREGLIDTAVKTSRSGYLQRCIIKGMEGLTVTYDSTVRDADGTLVQFLYG 1068
Query: 424 EDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNF 483
EDGLD TK++YLTD FSF+ ++ + S LN LA G +
Sbjct: 1069 EDGLDPTKQKYLTD--FSFV---LRNVGSESAQLNFSNGFKEKLA----------GSKDE 1113
Query: 484 IFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSV 543
I ++ A K + A P+IS P + SE + +
Sbjct: 1114 ILKHMKS----------------AIKHAKLNSAAAKDPIISMVNPARVAFATSEKFYEQM 1157
Query: 544 VKYTKGRTDASHVDKFY----------------DMIFY-KNLLSLANPGENVGVLAAQSI 586
KY K D DK +++F K + SL GE VG++A QS+
Sbjct: 1158 TKYIKDNEDGLIRDKSAVSSGLINAPAVSKKSAELVFAAKYMRSLVEAGEGVGIVAGQSV 1217
Query: 587 GEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKA 646
GEPSTQMTLNTFH AG NVTLGIPRLREILM A+++I TP+M + ++ E +
Sbjct: 1218 GEPSTQMTLNTFHLAGHSAKNVTLGIPRLREILMTASRSISTPAMNLLLHEELSAAEGEV 1277
Query: 647 NRLAKSMTRITMADVLEKVKIKEWLEISPEPHMN--YQMKFCFIPAHMYRDKTSVKPSKI 704
AKS++ + +ADVL+ + E + + Y ++ F PA+ Y ++ S +
Sbjct: 1278 --FAKSISVLPLADVLDTAIVNERIGKGNNGALAKLYDVRLNFFPANEYTKAYAIDTSDV 1335
Query: 705 IDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRVD- 763
+D E++FL L K + +K E + + V+ E A G G A D
Sbjct: 1336 MDTIEKRFLDHL----LKIMVREIKKRRSESTSATPDVGVKAGVVEMATGNGEARAANDD 1391
Query: 764 ------------------------VSSDEERDEEDAVQSH--KKVNQEEDNDFE--EPED 795
VS DE+DA+Q ++ + EED FE P
Sbjct: 1392 NDEDDDDGDNDATNAKNKANREEAVSYGPNDDEDDAIQRQMERENSPEEDEGFEGSPPPR 1451
Query: 796 EERMSEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC----- 850
++ +E D ++ D + + V +++ V K+ D+ WC
Sbjct: 1452 TDKDGSDDEYDGDGDVDS-------DEGALRAERVKDRYLRVTKFRNDEAGE-WCEFTLE 1503
Query: 851 ------KLLFLPSNLFEEKESKHLLK------------------------------TDGI 874
K+L L N+ + K +++ T G
Sbjct: 1504 FEANTPKVLML--NIVQAAVKKSVIQQIPGVGSCTFTADHKIKDSAGNDVSVPAIYTSGC 1561
Query: 875 NVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSL 934
N+ + +Y ++ NK+ NDI + YG+EA I+ E+ VF+ +GI VD RHL+L
Sbjct: 1562 NLKAMQKYGDFINPNKIATNDIGAVLDVYGVEACRNNIVSELAGVFSGHGISVDNRHLNL 1621
Query: 935 VADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLG 994
+ADYMT +G Y NRNG+R N S KM+FE L ++ A + G D LR PS R+++G
Sbjct: 1622 IADYMTRNGDYTPFNRNGLRGNVSPFTKMSFETTLAFLKDAVLDGDWDDLRTPSGRIVMG 1681
Query: 995 QECRQGTGLFQL 1006
+ + GTG F +
Sbjct: 1682 RLGKIGTGAFDV 1693
>gi|295671524|ref|XP_002796309.1| DNA-directed RNA polymerase I subunit RPA1 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226284442|gb|EEH40008.1| DNA-directed RNA polymerase I subunit RPA1 [Paracoccidioides sp.
'lutzii' Pb01]
Length = 1691
Score = 560 bits (1444), Expect = e-156, Method: Compositional matrix adjust.
Identities = 382/1079 (35%), Positives = 565/1079 (52%), Gaps = 133/1079 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA L + QYL G PL GLIQDH+ G + RDTF + +Y L+Y L
Sbjct: 656 RAEAMQLADTDHQYLSATSGKPLRGLIQDHISMGVWFTSRDTFFDKEDYHQLLYSCLRPE 715
Query: 73 NT-----EIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
N+ +I + P I +P LWTGKQ++ST+++N+TP I HG L+G K
Sbjct: 716 NSHTVIEKIVLMEPAIQRPQKLWTGKQIISTIMLNITP----IKFHGLNLTG---KSSTR 768
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
+G + V + GELL GILDK Q G + GL+H+V + +G A L+ +
Sbjct: 769 GDCWG--KGSEEGQVIFQDGELLCGILDKAQLGPSPSGLIHSVHELYGHVVAGKLIGIIG 826
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL---PLDTDPE 244
+L T +L FT G+ D+ + ++ D R I+ +A LG + A + L P+D +
Sbjct: 827 RLLTKFLHMRAFTCGMDDLRLTKKGDEDRKMILQEAESLGRQIALKYVTLDINPVDDEEA 886
Query: 245 IISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESG 304
+ +L++A + +A +D S V++ I+ CLP GL +PFP N +Q M SG
Sbjct: 887 ELKRRLEDALRD-DEKQAGLDAVCSSQAATVSSEISAACLPLGLEKPFPWNQMQAMTTSG 945
Query: 305 AKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQP 364
AKG+ VN ISC LGQ LEG+R +M+SG+TLPSF P+E S AGG++ GRF+TGI+P
Sbjct: 946 AKGTVVNANLISCNLGQQILEGRRVPVMISGKTLPSFKPFETSLMAGGYISGRFLTGIKP 1005
Query: 365 QEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRD-SDLSLIQVLYG 423
QE++FH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL YD +VR+ SD S+IQ LYG
Sbjct: 1006 QEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKAEYDNSVRETSDGSVIQFLYG 1065
Query: 424 EDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNF 483
EDGL++TK+++L D FSFL N Y +L L +G F
Sbjct: 1066 EDGLEITKQKHLQD--FSFLAQN------YWTVLEEL-----------------NGSDEF 1100
Query: 484 IFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKA-CPQPLISTFQPDAHFGSISENLADS 542
T+ D +W + A KK+RK K C P +S F P + +GS SE A +
Sbjct: 1101 ------TRIGSDAAAEW---NRNAIKKFRKTRKLDCIDPALSIFVPGSCYGSTSETFAMA 1151
Query: 543 VVKYTKGRTDASHVDK-----------FYDMIFYKNLLSLANPGENVGVLAAQSIGEPST 591
+ KY K D +K F ++ K + S+ PGE+VG++A QSIGEPST
Sbjct: 1152 LRKYQKENPDKQLREKGKVEDGISKGSFAKVMNMKYMRSVVEPGESVGIVAGQSIGEPST 1211
Query: 592 QMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAK 651
QMTLNTFH AG NVTLGIPRLREI+M A+ I TP+M F + E+ AK
Sbjct: 1212 QMTLNTFHLAGHSTKNVTLGIPRLREIVMTASSQILTPTMTAIFHRSLS--ERDGRMFAK 1269
Query: 652 SMTRITMADVLEKVKIKEWLEISP--EPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFE 709
++R+++A+V++ +++ E + Y ++ F P Y ++ +++ I+ +
Sbjct: 1270 GISRLSLAEVVDSLRVHERISSGSGRAKAKIYDLEIDFFPPEEYTEEYAIQIEDILKTLQ 1329
Query: 710 RKFLKEL----EVAIAKRAAQ-GLKNMNIEQ-----SRDQMEDDVEDDEGE--------- 750
F+ L + +R A+ L + Q S ME+ E
Sbjct: 1330 NTFVPRLVKLTRAELKRRTAEKSLSTFSAAQPDIGVSARVMEEPTRRFGREARDADADTN 1389
Query: 751 ---------GAEGAGAALGRVDVSSDEERD--EEDAVQSHKKVNQEEDNDFEEPEDEERM 799
A+ A A + R + S E D EED ++ +QE D+D E D +
Sbjct: 1390 DDDDAEDQDDAKRAMAHMNRSNQVSYEAPDEGEEDIIRGQD--SQELDSDEETDGDRQGA 1447
Query: 800 SEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC--------- 850
+ ED + + +E + V+++++ V K+ + KN C
Sbjct: 1448 AAAREDVDMEDADGDSDLEKIQKSKKSEDTVISKYSEVTKFKFSLKNGKSCHIQLQYDIS 1507
Query: 851 --KLLFLP-------SNLFE-------------EKESKHLLKTDGINVNFISQYRHLLDL 888
KLL LP ++L + +K++ + TDG+N+ + +Y+H+++
Sbjct: 1508 IPKLLLLPLVEGAARASLIQNIPRLGICTYVETDKDNPAHVITDGVNLLAMREYQHIVNP 1567
Query: 889 NKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAM 948
+ LY N I M YG+EAA IIRE+ VF + I VD RHL+L+ D MTH+G + A
Sbjct: 1568 HTLYTNSIADMLVWYGVEAARASIIREMATVFNSHSISVDNRHLNLIGDVMTHAGGFRAF 1627
Query: 949 NRNG-IRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
NR G ++ N S + KM+FE + +R A ++ D+L PS R+++G+ GTG F +
Sbjct: 1628 NRMGLVKDNTSPLMKMSFETTVGFLRDAVLERDWDNLNGPSGRIVMGRVGTVGTGAFDV 1686
>gi|353240973|emb|CCA72815.1| probable DNA-directed RNA polymerase I [Piriformospora indica DSM
11827]
Length = 1755
Score = 560 bits (1444), Expect = e-156, Method: Compositional matrix adjust.
Identities = 384/1138 (33%), Positives = 570/1138 (50%), Gaps = 204/1138 (17%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S ++EA L QYLVP G PL GLIQDHV+ G L+ + +F TR EY LVY A
Sbjct: 676 SQLSRSEAFNLSCTDDQYLVPTSGKPLRGLIQDHVVGGLWLTNKSSFFTREEYQQLVYGA 735
Query: 69 LCILNT-----EIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDK 123
L N I +PP I KP PLWTGKQ++ST++ N+TP++ + +
Sbjct: 736 LRPENNYTGDGRIHMVPPAILKPQPLWTGKQIISTILKNITPRNASPLT-------VKSA 788
Query: 124 KQFGSTQYGLVHAV----WDT-------------------HVTIRHGELLSGILDKKQFG 160
Q +G + WD+ V + GEL+ G+LDK QFG
Sbjct: 789 AQVKEASWGRPRNIHPSNWDSDDVKKDRSQDKYERNLSEERVLVFGGELVRGVLDKSQFG 848
Query: 161 STQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKII 220
++ YGLVH+V+D +GAE A LLS ++LFT YLQ FT + D+++ E ++ R +
Sbjct: 849 ASAYGLVHSVYDVYGAEVAGRLLSIFSRLFTKYLQHRAFTCRMDDLVLTDEGEKARKSTM 908
Query: 221 NKARRLGTEAACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNIN 280
GTEAA + S Q + + +A++DR LL+KV +
Sbjct: 909 ASGATFGTEAATS-----------FFSDLSQSTKKNEAEKKAELDR----LLEKVLRDDA 953
Query: 281 QVC--------------------LPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLG 320
Q+ +P GL+ PFP N++Q M SGAKGS+ N QIS LLG
Sbjct: 954 QMAGLDNIVKGKMTGLFEAVIKVIPNGLLRPFPDNHMQAMTTSGAKGSSTNARQISALLG 1013
Query: 321 QIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLID 380
Q ELEG+R +MVSG+TLPSF P+E + AGG+V RF+TG++PQEF+FHCMAGREGLID
Sbjct: 1014 QQELEGRRVPVMVSGKTLPSFRPFETAAIAGGYVASRFLTGLKPQEFYFHCMAGREGLID 1073
Query: 381 TAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQF 440
TAVKTSRSGYLQRCL+KHLEG+ VHYD TVR +D ++ Q LYGEDGLDVT++ +L+ +F
Sbjct: 1074 TAVKTSRSGYLQRCLIKHLEGIQVHYDHTVRGADSAVYQFLYGEDGLDVTRQMHLS--KF 1131
Query: 441 SFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQW 500
F NL K+ SLA F + I + ++++
Sbjct: 1132 GF---------------NL--KNQRSLA----TKFAAKALAGIIDEENANDHMKRVMKKK 1170
Query: 501 YQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKY----------TKGR 550
+ D + P P I+TF P H G++SE A + Y KG
Sbjct: 1171 RKHPD----------RPLPDPTINTFFPSRHLGAVSEQFAQELDDYISQNKNHLLIVKGN 1220
Query: 551 TDASHVDK-------FYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGR 603
+ + F ++ + + SL PGE VG+LA+Q +GEPSTQMTLNTFHFAG
Sbjct: 1221 INGRQAIEPTLPSKVFKSLMSVRYIRSLVEPGEAVGLLASQGVGEPSTQMTLNTFHFAGH 1280
Query: 604 GDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLE 663
G NVTLGIPRLREI+M A KTP M +P + P + K + ++++++ ++E
Sbjct: 1281 GAANVTLGIPRLREIVMTAAVNPKTPMMTLPIVKGTPLV--KVEEFCQETSQLSLSHLIE 1338
Query: 664 KVKIKEWLEISPEPHMN-YQMKFCFIPAHMYRDKTSVKPSKIIDHFER----------KF 712
++I E + + + ++ F P Y+ V ++I +
Sbjct: 1339 NIRITEHVRHHHDARSKVFGVEMRFYPQSEYKTVHFVSTRQVILALSKLAAILKRSIQAE 1398
Query: 713 LKELEVAIAKRAAQGLKNMNIEQSR------------DQMEDDVEDDEGEGAE-GAGAA- 758
+K+L V ++ +AA K ++SR D + VED++ +G+E G G A
Sbjct: 1399 VKKLTVDLSAQAASIGKGKTAKESRATGRDDTDDVDADNGDTVVEDNDRDGSEIGDGDAD 1458
Query: 759 ------LGRVDVSSDEE-------RDEEDAVQSHKKVNQEEDNDFEEPED--EERMSERE 803
+ + DEE E++A+ + D+D E+ +D E+R SE
Sbjct: 1459 AEKQQTRSKEQATYDEEEGDDADSESEDEAIADETALEAATDSDGEDMDDQGEDRDSEAA 1518
Query: 804 ED-------DNTSNI------------------GERFKIEFRDST----------NVFVK 828
E+ D+ ++ G F++E+ + VK
Sbjct: 1519 EEQGLERALDDIKDVFSSALPLVPDSWRYDHERGLFFELEYDVNMPKLLLVDILERSCVK 1578
Query: 829 DVVNQHNIVHKYSYDKKNHMWCKLLFLPSNLFEEKESKHLLKTDGINVNFISQYRHLLDL 888
+V + +HK K+H + + +F + T+ +V F+ + ++D+
Sbjct: 1579 CIVREVPGIHKSHAPSKSHKA-----ISNGVFTGDADIIVEGTNLRSVAFLGE--GVVDV 1631
Query: 889 NKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAM 948
++ N IH + +TYG+EAA I++E+K+VF VY I+V+ RHL L+ADYMT G +
Sbjct: 1632 TRISTNSIHAILATYGVEAARASIVKEIKDVFDVYSIKVNIRHLMLIADYMTFDGGFKPF 1691
Query: 949 NRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
NR GI + S + K ++E + A++ G D+L PS ++ G+ R GTG F +
Sbjct: 1692 NRRGIATHSSPLLKASYETTAAFLSDATLHGDFDTLSTPSGNIVAGRPARSGTGAFDI 1749
>gi|164428077|ref|XP_956006.2| hypothetical protein NCU01638 [Neurospora crassa OR74A]
gi|18307453|emb|CAD21513.1| probable DNA-directed RNA polymerase I [Neurospora crassa]
gi|157072001|gb|EAA26770.2| hypothetical protein NCU01638 [Neurospora crassa OR74A]
Length = 1701
Score = 558 bits (1438), Expect = e-156, Method: Compositional matrix adjust.
Identities = 381/1074 (35%), Positives = 566/1074 (52%), Gaps = 134/1074 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL--- 69
+AEA L + QY+ G PL GLIQDH+ L +DTF RA Y L+Y AL
Sbjct: 669 RAEALQLADTDHQYISGTAGKPLRGLIQDHLSVSVILCNKDTFFDRANYHQLIYAALRPE 728
Query: 70 --CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL-LSGILDKKQF 126
I+ +I LPP I KP+P WTGKQV++T++ N+ P + G+L ++G Q
Sbjct: 729 SGHIMGDKIELLPPAIIKPVPRWTGKQVITTILKNIKPPN-----CGDLWMNG---STQV 780
Query: 127 GSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCL 186
+ Q+G HA + VT R GE ++GILDK Q G + GL+H++ + +G A LLSC+
Sbjct: 781 KAHQWG-DHAPEEGQVTFRDGEFITGILDKSQLGPSSGGLIHSIHEVYGPSAAGKLLSCM 839
Query: 187 AKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL----PLDTD 242
+L T YL V F+ G+ D+++ + + R + I A +G E A + L P D
Sbjct: 840 GRLLTRYLAMVAFSCGMDDLVMTPKGEADRKEKIKAAAHIGLEVAAKYVSLEEQKPTPED 899
Query: 243 PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
P ++ +L+E + + + +D ++++ I + CLP GL + FP N +Q M
Sbjct: 900 P-LLLQRLEEVMRNDKK-QENLDLLMNQRCAQLSSEITKTCLPAGLQKKFPKNQMQSMTT 957
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
SGAKGS VN ISC LGQ LEG+R +MVSG+TLPSF P++ + RAGG++ RF+TGI
Sbjct: 958 SGAKGSPVNANLISCNLGQQVLEGRRVPVMVSGKTLPSFKPFDTNARAGGYIVQRFLTGI 1017
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
+PQE++FH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL V YD +VRDSD S+IQ L+
Sbjct: 1018 RPQEYYFHHMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKVAYDTSVRDSDGSIIQFLF 1077
Query: 423 GEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPN 482
GEDG+D++K++YL D F F+ N+K + L L + G
Sbjct: 1078 GEDGIDISKQKYLND--FEFVLRNLK-------------------SELAHLHYSEEG--- 1113
Query: 483 FIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACP-QPLISTFQPDAHFGSISENLAD 541
T L E ++ + + + + P P+ S P + + SEN +
Sbjct: 1114 ----------TQALFEHKDEMIKRMKAAIKSRDTRNPLNPIESDVDPALYAFATSENFFE 1163
Query: 542 SVVKYTKGRTDASHVDKFYD---MIFYKN---------LLSLANPGENVGVLAAQSIGEP 589
+ KY K D +K D +I KN + SL PGE VG++A QS+GEP
Sbjct: 1164 KMTKYVKENKDGLIKEKKGDSSGIIVRKNAEKILAAKYIRSLVEPGEAVGIVAGQSVGEP 1223
Query: 590 STQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRL 649
STQMTLNTFH AG NVTLGIPRLREILM A+ I TP+M + P+ + R
Sbjct: 1224 STQMTLNTFHLAGHSAKNVTLGIPRLREILMTASSKISTPAMTL--YPNAELSDTDCERF 1281
Query: 650 AKSMTRITMADVLEKVKIKEWLEIS---PEPHMNYQMKFCFIPAHMYRDKTSVKPSKIID 706
AKS++ + +ADV ++V ++E + P + ++++ F P+ Y +++ + ++
Sbjct: 1282 AKSISILPLADVTKEVTVREKMGRGLGYPLAKL-FEIRLRFFPSEEYCKTYAIEIADVLA 1340
Query: 707 HFERKFLKEL------------EVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEG 754
ERKF+ L + A G+K +E + E V +D +
Sbjct: 1341 TVERKFVPLLGQLTKKEIKKKYKENSAATPEIGVKVGTVEMAAPDGERAVGEDGDADDDD 1400
Query: 755 AGA-----ALGRVD----VSSDEERDEEDAVQ-SHKKVNQEEDNDFEEPE-DEERM--SE 801
G A R + VS D++DA+Q S ++ + E+ E E D+E S
Sbjct: 1401 DGDDDATNAKSRANRHEAVSYGPNDDDDDAIQKSLQRADDGEEEGEERLEFDDEGYGGSP 1460
Query: 802 REEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLL--FLPS-- 857
ED N +K R++ +KD +++ V ++ D++ WC+++ F P+
Sbjct: 1461 EPEDRNADGDMSVYKSRSRETR---IKD---KNDFVARFHCDEQGGEWCEMILEFDPATP 1514
Query: 858 -----NLFEEKESKHLLK--------------------TDGINVNFISQYRHLLDLNKLY 892
NL E K L++ T+G N+ + QY ++ NK+
Sbjct: 1515 KILMLNLVTEAVKKALIQQIPRLGTATFVVENKERLVHTEGSNIKAMQQYADYINPNKIM 1574
Query: 893 VNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNG 952
NDI + YG+EAA I+RE+ VF +GI VDPRHL+L+ DYMT +G + NR G
Sbjct: 1575 TNDIAQVLEIYGVEAARNSIVRELSGVFKGHGIGVDPRHLNLIGDYMTRNGGFTPFNRMG 1634
Query: 953 IRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+ N S KM++E + ++ A + G DSL PS R+++G+ GTG F +
Sbjct: 1635 LTGNVSPFTKMSYETTVGFLKDAVLDGDWDSLDTPSGRLVVGKLGVTGTGSFDV 1688
>gi|336468277|gb|EGO56440.1| hypothetical protein NEUTE1DRAFT_122981 [Neurospora tetrasperma FGSC
2508]
gi|350289470|gb|EGZ70695.1| putative DNA-directed RNA polymerase I [Neurospora tetrasperma FGSC
2509]
Length = 1701
Score = 558 bits (1437), Expect = e-156, Method: Compositional matrix adjust.
Identities = 381/1074 (35%), Positives = 566/1074 (52%), Gaps = 134/1074 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL--- 69
+AEA L + QY+ G PL GLIQDH+ L +DTF RA Y L+Y AL
Sbjct: 669 RAEALQLADTDHQYISGTAGKPLRGLIQDHLSVSVILCNKDTFFDRANYHQLIYAALRPE 728
Query: 70 --CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL-LSGILDKKQF 126
I+ +I LPP I KP+P WTGKQV++T++ N+ P + G+L ++G Q
Sbjct: 729 SGHIMGDKIELLPPAIIKPIPRWTGKQVITTILKNIKPPN-----CGDLWMNG---STQV 780
Query: 127 GSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCL 186
+ Q+G HA + VT R GE ++GILDK Q G + GL+H++ + +G A LLSC+
Sbjct: 781 KAHQWG-DHAPEEGQVTFRDGEFITGILDKSQLGPSSGGLIHSIHEVYGPSAAGKLLSCM 839
Query: 187 AKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL----PLDTD 242
+L T YL V F+ G+ D+++ + + R + I A +G E A + L P D
Sbjct: 840 GRLLTRYLAMVAFSCGMDDLVMTPKGEADRREKIKAAAHIGLEVAAKYVSLEEQKPTPED 899
Query: 243 PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
P ++ +L+E + + + +D ++++ I + CLP GL + FP N +Q M
Sbjct: 900 P-LLLQRLEEVMRNDKK-QENLDLLMNQRCAQLSSEITKTCLPAGLQKKFPKNQMQSMTT 957
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
SGAKGS VN ISC LGQ LEG+R +MVSG+TLPSF P++ + RAGG++ RF+TGI
Sbjct: 958 SGAKGSPVNANLISCNLGQQVLEGRRVPVMVSGKTLPSFKPFDTNARAGGYIVQRFLTGI 1017
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
+PQE++FH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL V YD +VRDSD S+IQ L+
Sbjct: 1018 RPQEYYFHHMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKVAYDTSVRDSDGSIIQFLF 1077
Query: 423 GEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPN 482
GEDG+D++K++YL D F F+ N+K + L L + G
Sbjct: 1078 GEDGIDISKQKYLND--FEFVLRNLK-------------------SELAHLHYSEEG--- 1113
Query: 483 FIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACP-QPLISTFQPDAHFGSISENLAD 541
T L E ++ + + + + P P+ S P + + SEN +
Sbjct: 1114 ----------TQALFEHKDEMIKRMKAAIKSRDTRNPLNPIESDVDPALYAFATSENFFE 1163
Query: 542 SVVKYTKGRTDASHVDKFYD---MIFYKN---------LLSLANPGENVGVLAAQSIGEP 589
+ KY K D +K D +I KN + SL PGE VG++A QS+GEP
Sbjct: 1164 KMTKYVKENKDGLIKEKKGDSSGIIVRKNAEKILAAKYIRSLVEPGEAVGIVAGQSVGEP 1223
Query: 590 STQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRL 649
STQMTLNTFH AG NVTLGIPRLREILM A+ I TP+M + P+ + R
Sbjct: 1224 STQMTLNTFHLAGHSAKNVTLGIPRLREILMTASAKISTPAMTL--YPNAELSDTDCERF 1281
Query: 650 AKSMTRITMADVLEKVKIKEWLEIS---PEPHMNYQMKFCFIPAHMYRDKTSVKPSKIID 706
AKS++ + +ADV ++V ++E + P + ++++ F P+ Y +++ + ++
Sbjct: 1282 AKSISILPLADVTKEVTVREKMGRGLGYPLAKL-FEIRLRFFPSEEYCKTYAIEIADVLA 1340
Query: 707 HFERKFLKEL------------EVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEG 754
ERKF+ L + A G+K +E + E V +D +
Sbjct: 1341 TVERKFVPLLGQLTKKEIKKKYKENSAATPEIGVKVGTVEMAAPDGERAVGEDGDADDDD 1400
Query: 755 AGA-----ALGRVD----VSSDEERDEEDAVQ-SHKKVNQEEDNDFEEPE-DEERM--SE 801
G A R + VS D++DA+Q S ++ + E+ E E D+E S
Sbjct: 1401 DGDDDATNAKNRANRHEAVSYGPNDDDDDAIQKSLQRADDGEEEGEERLEFDDEGYGGSP 1460
Query: 802 REEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLL--FLPS-- 857
ED N +K R++ +KD +++ V ++ D++ WC+++ F P+
Sbjct: 1461 EPEDRNADGDMSVYKSRSRETR---IKD---KNDFVARFHCDEQGGEWCEMILEFDPATP 1514
Query: 858 -----NLFEEKESKHLLK--------------------TDGINVNFISQYRHLLDLNKLY 892
NL E K L++ T+G N+ + QY ++ NK+
Sbjct: 1515 KILMLNLVTEAVKKALIQQIPRLGTATFVVENKERLVHTEGSNIKAMQQYADYINPNKIM 1574
Query: 893 VNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNG 952
NDI + YG+EAA I+RE+ VF +GI VDPRHL+L+ DYMT +G + NR G
Sbjct: 1575 TNDIAQVLEIYGVEAARNSIVRELSGVFKGHGIGVDPRHLNLIGDYMTRNGGFTPFNRMG 1634
Query: 953 IRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+ N S KM++E + ++ A + G DSL PS R+++G+ GTG F +
Sbjct: 1635 LTGNVSPFTKMSYETTVGFLKDAVLDGDWDSLDTPSGRLVVGKLGVTGTGSFDV 1688
>gi|358380112|gb|EHK17791.1| hypothetical protein TRIVIDRAFT_57534 [Trichoderma virens Gv29-8]
Length = 1640
Score = 556 bits (1434), Expect = e-155, Method: Compositional matrix adjust.
Identities = 384/1075 (35%), Positives = 558/1075 (51%), Gaps = 133/1075 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL--- 69
+ EA + + QYL G PL GLIQDH+ L RD F TR+++ L+Y AL
Sbjct: 605 RVEALQIADTDHQYLSGTAGKPLRGLIQDHISVSVALCSRDAFFTRSDFQQLIYSALRPE 664
Query: 70 --CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
IL I+ PP I KP+P WTGKQV+ST++ N+ P + G L + + Q
Sbjct: 665 SGHILGERIQLSPPAIIKPVPRWTGKQVISTILANIRPPN-----CGGLT--MKENAQIK 717
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
+ Q+G + + V I+ GE ++GILDK Q G + GL+HAV + +G A LLS L
Sbjct: 718 AEQWGT--SSEEGSVLIQDGEFITGILDKSQIGPSSSGLIHAVHEIYGPSVAGKLLSSLG 775
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACN--ALGLPLDTDPEI 245
+L T YL F+ G+ D+ + E + R + + A ++G E A N +LG D +
Sbjct: 776 RLLTRYLSMRAFSCGMDDLRLTAEGEAARRRELVAADKMGLEIASNYVSLGKQEDAQNPL 835
Query: 246 ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGA 305
+ +L+E + + +D +T+ + + +P GL + FP N +Q M SGA
Sbjct: 836 LLERLEEVMRDDSK-QEGLDLLMNQGTKDITDAVQKALIPNGLEKNFPKNQMQVMTTSGA 894
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS VN ISC LGQ LEG+R +MVSG+TLPSF PY+ + RAGG++ RF+TGI+PQ
Sbjct: 895 KGSRVNASLISCNLGQQVLEGRRVPVMVSGKTLPSFRPYDTNIRAGGYIVNRFLTGIRPQ 954
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
E++FH MAGREGLIDTAVKTSRSGYLQRC++K +EGLTV YD +VRD+D SLIQ LYGED
Sbjct: 955 EYYFHHMAGREGLIDTAVKTSRSGYLQRCIIKGMEGLTVSYDTSVRDADGSLIQFLYGED 1014
Query: 426 GLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIF 485
GLDVTK+ YL D F F+ N+ + LK P K
Sbjct: 1015 GLDVTKQNYLKD--FRFILQNVTSEAAQ------LKYDP---------------KVGERL 1051
Query: 486 SPHRTKFT--MDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSV 543
+R F M + +L+D+ K PL ++F P + + SE +++
Sbjct: 1052 GANRQAFQKYMKSAVRHAKLNDRKGK----------DPLTASFDPATNAFATSETFYEAM 1101
Query: 544 VKYTKGRTDA----------------SHVDKFYDMIF-YKNLLSLANPGENVGVLAAQSI 586
Y K D + K +M+F K L SL PGE VG++A QSI
Sbjct: 1102 TAYLKDNPDGLVREKNSQDKAPLNQVALNKKNAEMLFAMKYLRSLVEPGEAVGIVAGQSI 1161
Query: 587 GEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKA 646
GEPSTQMTLNTFH AG NVTLGIPRLREILM A+K I TP+M + P+ E+
Sbjct: 1162 GEPSTQMTLNTFHLAGHSAKNVTLGIPRLREILMTASKTISTPAMTL--YPNAELSEQDT 1219
Query: 647 NRLAKSMTRITMADVLEKVKIKEWLEISPEPHMN--YQMKFCFIPAHMYRDKTSVKPSKI 704
KS++ + M+ VL+ V ++E + + Y++K F PA Y +V S I
Sbjct: 1220 EVFTKSISVLRMSQVLDGVVVEEMVGKGKLRGLAKIYKIKLRFFPAAEYSTTYAVSVSDI 1279
Query: 705 IDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQM---EDDVEDDEGEGAEGAGAAL-G 760
+ E+K L+ + ++I KR + QS+ M E V+ E A GAA G
Sbjct: 1280 MGTVEKKLLRNI-LSIMKREVKK------RQSQSNMATPEIGVKAGVVEMARPEGAAEGG 1332
Query: 761 RVDVSSDEERDEEDAVQSHKKVNQEE--------------DNDFEEPEDEERMSEREEDD 806
R + D++ D++DA + K+ N+ E ND + +++ E ++
Sbjct: 1333 RDEDDDDDDEDDDDATGAKKRANRSEAVSYGPNDDDDDAIQNDMSKGAEDDEDDEDADNT 1392
Query: 807 NTSNIGERFKIEFRD------STNVFVKDVVNQHNIVHKYSYDKKNHMWC---------- 850
++ N E D S V + V+N + V + D K WC
Sbjct: 1393 SSQNRDEEDDGGDEDEAPVSWSAKVRAERVLNAYAEVTDFQCDDKGGEWCNVTLEFDVNI 1452
Query: 851 -KLLFL------------------PSNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKL 891
K+L L S + +++ + ++ T G+N+ + +Y +D +++
Sbjct: 1453 PKVLMLNIVEDAVRQTVVQQVAGVGSCMVAQEKGESVINTTGVNLRAMQRYSDFIDPHRI 1512
Query: 892 YVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRN 951
NDI + YG+EA I+RE+ VF +GI+VD RHL+L+AD+MT G + A +R
Sbjct: 1513 QTNDIAAVLEVYGVEACRANIVRELSGVFGGHGIKVDNRHLNLIADHMTRGGDFTAFSRM 1572
Query: 952 GIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
G+R N S KM+FE L ++ A + G D L PS+R+++G+ R GTG F +
Sbjct: 1573 GLRGNVSPFTKMSFETTLGFLKDALLDGDWDDLTTPSSRLVMGKLGRVGTGGFDV 1627
>gi|159131514|gb|EDP56627.1| DNA-directed RNA polymerase I subunit (Rpa190), putative [Aspergillus
fumigatus A1163]
Length = 1680
Score = 556 bits (1432), Expect = e-155, Method: Compositional matrix adjust.
Identities = 382/1085 (35%), Positives = 560/1085 (51%), Gaps = 145/1085 (13%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
+ +AEA L + QYLV G PL GLIQDH+ G + RDTF +Y L+Y
Sbjct: 649 NELARAEAMMLADADHQYLVATSGKPLRGLIQDHISMGTWFTCRDTFFDEEDYHELLYSC 708
Query: 69 LCILNT-----EIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDK 123
L N+ I+ + PT+ KP LWTGKQV++T++ N+ P + + S D+
Sbjct: 709 LRPENSHTVTERIQLVEPTLLKPKRLWTGKQVITTILKNIMPPGRAGLNLKSKSSTPGDR 768
Query: 124 KQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLL 183
G+ + V + GE+L GILDKKQ G T GL+ A+ + +G A L+
Sbjct: 769 WGEGNEE---------GTVIFKDGEMLCGILDKKQIGPTAGGLIDAIHEVYGHTIAGRLI 819
Query: 184 SCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDP 243
S L +L T YL FT G+ D+ + +E DR R + +++A +G E A + L T P
Sbjct: 820 SILGRLLTRYLNMRAFTCGIDDLRLTKEGDRLRKEKLSQAASIGREVALKYVTLDQTTVP 879
Query: 244 EIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTN--------NINQVCLPEGLIEPFPAN 295
+ Q E + D+Q S LD V+N I Q CLP+GL +PFP N
Sbjct: 880 D----QDAELRRRLEDVLRDDDKQ--SGLDSVSNARTAKLSTEITQACLPKGLAKPFPWN 933
Query: 296 NLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVD 355
+Q M SGAKGS+VN ISC LGQ LEG+R +M+SG+TLPSF ++ P AGG+V
Sbjct: 934 QMQSMTISGAKGSSVNANLISCNLGQQVLEGRRVPVMISGKTLPSFRAFDTHPMAGGYVC 993
Query: 356 GRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRD-SD 414
GRF+TGI+PQE++FH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL YD +VR+ SD
Sbjct: 994 GRFLTGIKPQEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLRAEYDTSVRESSD 1053
Query: 415 LSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLT 474
S++Q LYGEDGLD+TK+ +L D F FL N Y I+ +
Sbjct: 1054 GSIVQFLYGEDGLDITKQVHLKD--FDFLTSN------YVSIMQSV-------------- 1091
Query: 475 FKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKA-CPQPLISTFQPDAHFG 533
N H D + W++ A KK RK K P++S + P + G
Sbjct: 1092 -------NLTSDFH--NLEKDEVTAWHK---DAMKKVRKTGKVDAMDPVLSVYHPGGNLG 1139
Query: 534 SISENLADSVVKYTKGRTDASHVDK------------FYDMIFYKNLLSLANPGENVGVL 581
S SE + ++ KY D DK F ++ K L S+ +PGE VG++
Sbjct: 1140 STSEAFSQALKKYEDTNPDKLLRDKKKNIDGLISKKAFNTLMNMKYLKSVVDPGEAVGIV 1199
Query: 582 AAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPK 641
A+QSIGEPSTQMTLNTFH AG NVTLGIPRLREI+M A+ I TP+M + ++ K
Sbjct: 1200 ASQSIGEPSTQMTLNTFHLAGHSAKNVTLGIPRLREIVMTASAHIMTPTMTLILNEELSK 1259
Query: 642 LEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCFIPAHMYRDKTSVKP 701
+ + R AK+++++++A+V++KVK+KE + + Y ++ PA Y + ++
Sbjct: 1260 --EHSERFAKAISKLSIAEVIDKVKVKERIATAGSRFKVYDVEIALFPAEEYTKEYAITT 1317
Query: 702 SKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQM---EDDVEDDEGEGAEGAGAA 758
+ + + KF+ +L K LK N E+S + ++ G EG
Sbjct: 1318 KDVQNTLQNKFIPKL----VKLTRAELKRRNDEKSLKSFSTAQPEIGVSVGVIEEGPRGP 1373
Query: 759 LGRVD-VSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNTSNIGERFKI 817
V+ D+E DE+DA ++ N+ +E PE EE R++D + E
Sbjct: 1374 DREVEPAQDDDEDDEDDAKRARSGQNRSNQVSYEGPEQEEIDMVRQQDAVEDDEDEDESG 1433
Query: 818 EFR-------------------DSTNVFVKDVVNQHNIVHKYSYDKKNHMWC-------- 850
E R T + +D+ ++ V ++ ++ C
Sbjct: 1434 EDRRQDSDVDMDDSDEETDEETKDTKLREEDIKGKYGEVTQFKFNPSKGTSCVVQLQYDI 1493
Query: 851 ---KLLFLPSNLFEEK-------------------------ESKHLLKTDGINVNFISQY 882
KLL LP L EE E H++ T+G+N+ + Y
Sbjct: 1494 STPKLLLLP--LVEEAARSAVIQSIPGLGNCTYVEADPVKGEPAHVI-TEGVNLLAMRDY 1550
Query: 883 RHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHS 942
+ ++ + +Y N IH+M YG+EAA I+RE+ +VF + I VD RHL+L+ D MT S
Sbjct: 1551 QDIIKPHSIYTNSIHHMLMLYGVEAARASIVREMSDVFQGHSISVDNRHLNLIGDVMTQS 1610
Query: 943 GTYVAMNRNG-IRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGT 1001
G + A NRNG ++ + S + KM+FE + ++ A ++ D+L++PS+R++ G+ GT
Sbjct: 1611 GGFRAFNRNGLVKDSSSPLAKMSFETTVGFLKDAVIERDFDNLKSPSSRIVAGRSGMVGT 1670
Query: 1002 GLFQL 1006
G F +
Sbjct: 1671 GAFDV 1675
>gi|156047829|ref|XP_001589882.1| hypothetical protein SS1G_09604 [Sclerotinia sclerotiorum 1980]
gi|154693999|gb|EDN93737.1| hypothetical protein SS1G_09604 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1705
Score = 556 bits (1432), Expect = e-155, Method: Compositional matrix adjust.
Identities = 376/1097 (34%), Positives = 569/1097 (51%), Gaps = 153/1097 (13%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
+ +AEA + + QYL G PL GLIQDH+ + +DT+ RA Y L+Y
Sbjct: 647 TEVARAEALQIADTDHQYLSATAGKPLRGLIQDHISVSVWMCNKDTYFDRATYQQLIYNC 706
Query: 69 L-----CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDK 123
+ I I+T+ P I KP+ WTGKQV++T++ N+TP + I L+G K
Sbjct: 707 IRPESGHISGERIQTVAPAIIKPVARWTGKQVITTILKNITPINCAPIS----LTG---K 759
Query: 124 KQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLL 183
Q + ++G + V + GE ++GILDK Q G GL+H+V + +G A LL
Sbjct: 760 TQTPADRWGADSE--EGVVLFKGGEFITGILDKAQIGPAGGGLIHSVHEVYGPATAGKLL 817
Query: 184 SCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL----PL 239
S L +L T YL FT G+ D+ + E ++ RT+ + A ++G E A + L P
Sbjct: 818 SILGRLLTKYLHMRAFTCGMDDLRLTPEGEKIRTETLMDAGKIGLEVAAKYVSLEDQKPT 877
Query: 240 DTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQF 299
DTD E+++ +L++ + +A +D + K++ I CLP+GL++ FP N +Q
Sbjct: 878 DTDQELLN-RLEDVMRDDSK-QAGLDALMNARAGKLSTAITNACLPQGLVKQFPHNQMQN 935
Query: 300 MVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFM 359
M SGAKGS VN ISC LGQ LEG+R +MVSG++LP F P+E RAGG++ RF+
Sbjct: 936 MTVSGAKGSAVNANLISCNLGQQVLEGRRVPLMVSGKSLPCFKPFETHVRAGGYIVNRFL 995
Query: 360 TGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQ 419
TGI+PQE++FH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL V YD +VRDSD S+IQ
Sbjct: 996 TGIRPQEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKVEYDTSVRDSDGSMIQ 1055
Query: 420 VLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSG 479
+YGEDGLDVTK+++LTD F FL N L+ L+ + G
Sbjct: 1056 FIYGEDGLDVTKQKHLTD--FKFLLQN----------------------LMSELSQLNYG 1091
Query: 480 KPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKA----CPQPLISTFQPDAHFGSI 535
P + D + + ++ K KK K KA P P++S + P + +
Sbjct: 1092 DPRY-----------DTIFEEKEIIIKRMKKALKHVKANDLNGPDPVLSEYNPGKYGYAT 1140
Query: 536 SENLADSVVKYTKGRTDASHVDKFYD-----------MIFYKNLLSLANPGENVGVLAAQ 584
SE +++ Y K D DK + ++ K L S+ PGE VG++A Q
Sbjct: 1141 SEKYFETLTNYMKTNPDGLVKDKEHPDGVGPRKALEPVLVAKYLKSVVEPGEAVGIVAGQ 1200
Query: 585 SIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEK 644
S+GEPSTQMTLNTFH AG NVTLGIPRLREI+M A+ I TPSM + ++ E
Sbjct: 1201 SVGEPSTQMTLNTFHLAGHSTKNVTLGIPRLREIVMTASNHISTPSMTLTLNEELTPDE- 1259
Query: 645 KANRLAKSMTRITMADVLEKVKIKEWL--EISPEPHMNYQMKFCFIPAHMYRDKTSVKPS 702
+ AKS++ +++A+VL+ +KE + ++ + Y + P+ Y + ++ +
Sbjct: 1260 -CEKFAKSISILSLAEVLDWASVKERIGRGVAFQQAKIYDIHIKLFPSKEYCETYAIDIN 1318
Query: 703 KIIDHFERKFLKELEV----AIAKRAAQ--GLKNMN------IEQSRDQMEDDVEDDEGE 750
+I +R+F ++L+ A+ K+ + G N I +S +E+ D E E
Sbjct: 1319 DVIFTLQRRFTQKLQSLTRKALGKKKVEKAGKAGANTAAVPEIGKSVGTIEEARPDAERE 1378
Query: 751 GAEGAGAALGRVDVSSDEER-------------DEEDAVQSHKKVNQEEDNDFEEPEDE- 796
E G D ++D+++ DE+DAVQ+ E D E+ EDE
Sbjct: 1379 LGEDDDDEDGEDDATNDKQKANRAEAVSYAANDDEDDAVQAQNA----EPEDVEDMEDEG 1434
Query: 797 -----ERMSEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC- 850
+ED+ + GER K + +T V+ + + ++ +D++N WC
Sbjct: 1435 IGGSPRAPQSDDEDEENDDNGERRKRKMNAATEELEAQVMKRCQDITRFRFDQENAEWCD 1494
Query: 851 ----------KLLFLPSNLFEEKESKHLLK------------------------------ 870
K+L L ++ EE L++
Sbjct: 1495 ISLEYDADVPKVLML--SIVEEALRSCLIQHIAGIGSCTYDGDNEVKDPKTGRTVKVPVV 1552
Query: 871 -TDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDP 929
T+G+N+ + Y ++ N + NDI M YG+EA I++E+ +VFA + I+VD
Sbjct: 1553 HTEGVNLKAMQNYAAFINPNTISTNDIAAMLENYGVEACRSTIVQELHSVFAGHAIQVDM 1612
Query: 930 RHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSA 989
RHL+L+ADYMT G + NRNG++ + S KM+FE + + A + D L PS+
Sbjct: 1613 RHLNLIADYMTRGGGFSPFNRNGMKGSVSPFMKMSFETTVGFLADAVAECDWDDLANPSS 1672
Query: 990 RVMLGQECRQGTGLFQL 1006
R+++G+ + GTG F +
Sbjct: 1673 RIVIGRMSKVGTGAFDV 1689
>gi|70996010|ref|XP_752760.1| DNA-directed RNA polymerase I subunit (Rpa190) [Aspergillus fumigatus
Af293]
gi|66850395|gb|EAL90722.1| DNA-directed RNA polymerase I subunit (Rpa190), putative [Aspergillus
fumigatus Af293]
Length = 1680
Score = 556 bits (1432), Expect = e-155, Method: Compositional matrix adjust.
Identities = 382/1085 (35%), Positives = 560/1085 (51%), Gaps = 145/1085 (13%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
+ +AEA L + QYLV G PL GLIQDH+ G + RDTF +Y L+Y
Sbjct: 649 NELARAEAMMLADADHQYLVATSGKPLRGLIQDHISMGTWFTCRDTFFDEEDYHELLYSC 708
Query: 69 LCILNT-----EIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDK 123
L N+ I+ + PT+ KP LWTGKQV++T++ N+ P + + S D+
Sbjct: 709 LRPENSHTVTERIQLVEPTLLKPKRLWTGKQVITTILKNIMPPGRAGLNLKSKSSTPGDR 768
Query: 124 KQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLL 183
G+ + V + GE+L GILDKKQ G T GL+ A+ + +G A L+
Sbjct: 769 WGEGNEE---------GTVIFKDGEMLCGILDKKQIGPTAGGLIDAIHEVYGHTIAGRLI 819
Query: 184 SCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDP 243
S L +L T YL FT G+ D+ + +E DR R + +++A +G E A + L T P
Sbjct: 820 SILGRLLTRYLNMRAFTCGIDDLRLTKEGDRLRKEKLSQAASIGREVALKYVTLDQTTVP 879
Query: 244 EIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTN--------NINQVCLPEGLIEPFPAN 295
+ Q E + D+Q S LD V+N I Q CLP+GL +PFP N
Sbjct: 880 D----QDAELRRRLEDVLRDDDKQ--SGLDSVSNARTAKLSTEITQACLPKGLAKPFPWN 933
Query: 296 NLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVD 355
+Q M SGAKGS+VN ISC LGQ LEG+R +M+SG+TLPSF ++ P AGG+V
Sbjct: 934 QMQSMTISGAKGSSVNANLISCNLGQQVLEGRRVPVMISGKTLPSFRAFDTHPMAGGYVC 993
Query: 356 GRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRD-SD 414
GRF+TGI+PQE++FH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL YD +VR+ SD
Sbjct: 994 GRFLTGIKPQEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLRAEYDTSVRESSD 1053
Query: 415 LSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLT 474
S++Q LYGEDGLD+TK+ +L D F FL N Y I+ +
Sbjct: 1054 GSIVQFLYGEDGLDITKQVHLKD--FDFLTSN------YVSIMQSV-------------- 1091
Query: 475 FKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKA-CPQPLISTFQPDAHFG 533
N H D + W++ A KK RK K P++S + P + G
Sbjct: 1092 -------NLTSDFH--NLEKDEVTAWHK---DAMKKVRKTGKVDAMDPVLSVYHPGGNLG 1139
Query: 534 SISENLADSVVKYTKGRTDASHVDK------------FYDMIFYKNLLSLANPGENVGVL 581
S SE + ++ KY D DK F ++ K L S+ +PGE VG++
Sbjct: 1140 STSEAFSQALKKYEDTNPDKLLRDKKKNIDGLISKKAFNTLMNMKYLKSVVDPGEAVGIV 1199
Query: 582 AAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPK 641
A+QSIGEPSTQMTLNTFH AG NVTLGIPRLREI+M A+ I TP+M + ++ K
Sbjct: 1200 ASQSIGEPSTQMTLNTFHLAGHSAKNVTLGIPRLREIVMTASAHIMTPTMTLILNEELSK 1259
Query: 642 LEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCFIPAHMYRDKTSVKP 701
+ + R AK+++++++A+V++KVK+KE + + Y ++ PA Y + ++
Sbjct: 1260 --EHSERFAKAISKLSIAEVIDKVKVKERIATAGSRFKVYDVEIALFPAEEYTKEYAITT 1317
Query: 702 SKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQM---EDDVEDDEGEGAEGAGAA 758
+ + + KF+ +L K LK N E+S + ++ G EG
Sbjct: 1318 KDVQNTLQNKFIPKL----VKLTRAELKRRNDEKSLKSFSTAQPEIGVSVGVIEEGPRGP 1373
Query: 759 LGRVD-VSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNTSNIGERFKI 817
V+ D+E DE+DA ++ N+ +E PE EE R++D + E
Sbjct: 1374 DREVEPAQDDDEDDEDDAKRARSGQNRSNQVSYEGPEQEEIDMVRQQDAVEDDEDEDESG 1433
Query: 818 EFR-------------------DSTNVFVKDVVNQHNIVHKYSYDKKNHMWC-------- 850
E R T + +D+ ++ V ++ ++ C
Sbjct: 1434 EDRRQDSDVDMDDSDEETDEETKDTKLREEDIKGKYGEVTQFKFNPSKGTSCVVQLQYDI 1493
Query: 851 ---KLLFLPSNLFEEK-------------------------ESKHLLKTDGINVNFISQY 882
KLL LP L EE E H++ T+G+N+ + Y
Sbjct: 1494 STPKLLLLP--LVEEAARSAVIQSIPGLGNCTYVEADPVKGEPAHVI-TEGVNLLAMRDY 1550
Query: 883 RHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHS 942
+ ++ + +Y N IH+M YG+EAA I+RE+ +VF + I VD RHL+L+ D MT S
Sbjct: 1551 QDIIKPHSIYTNSIHHMLMLYGVEAARASIVREMSDVFQGHSISVDNRHLNLIGDVMTQS 1610
Query: 943 GTYVAMNRNG-IRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGT 1001
G + A NRNG ++ + S + KM+FE + ++ A ++ D+L++PS+R++ G+ GT
Sbjct: 1611 GGFRAFNRNGLVKDSSSPLAKMSFETTVGFLKDAVIERDFDNLKSPSSRIVAGRSGMVGT 1670
Query: 1002 GLFQL 1006
G F +
Sbjct: 1671 GAFDV 1675
>gi|44889981|emb|CAF32099.1| DNA-directed RNA polymerase i, putative [Aspergillus fumigatus]
Length = 1692
Score = 555 bits (1431), Expect = e-155, Method: Compositional matrix adjust.
Identities = 382/1085 (35%), Positives = 560/1085 (51%), Gaps = 145/1085 (13%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
+ +AEA L + QYLV G PL GLIQDH+ G + RDTF +Y L+Y
Sbjct: 661 NELARAEAMMLADADHQYLVATSGKPLRGLIQDHISMGTWFTCRDTFFDEEDYHELLYSC 720
Query: 69 LCILNT-----EIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDK 123
L N+ I+ + PT+ KP LWTGKQV++T++ N+ P + + S D+
Sbjct: 721 LRPENSHTVTERIQLVEPTLLKPKRLWTGKQVITTILKNIMPPGRAGLNLKSKSSTPGDR 780
Query: 124 KQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLL 183
G+ + V + GE+L GILDKKQ G T GL+ A+ + +G A L+
Sbjct: 781 WGEGNEE---------GTVIFKDGEMLCGILDKKQIGPTAGGLIDAIHEVYGHTIAGRLI 831
Query: 184 SCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDP 243
S L +L T YL FT G+ D+ + +E DR R + +++A +G E A + L T P
Sbjct: 832 SILGRLLTRYLNMRAFTCGIDDLRLTKEGDRLRKEKLSQAASIGREVALKYVTLDQTTVP 891
Query: 244 EIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTN--------NINQVCLPEGLIEPFPAN 295
+ Q E + D+Q S LD V+N I Q CLP+GL +PFP N
Sbjct: 892 D----QDAELRRRLEDVLRDDDKQ--SGLDSVSNARTAKLSTEITQACLPKGLAKPFPWN 945
Query: 296 NLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVD 355
+Q M SGAKGS+VN ISC LGQ LEG+R +M+SG+TLPSF ++ P AGG+V
Sbjct: 946 QMQSMTISGAKGSSVNANLISCNLGQQVLEGRRVPVMISGKTLPSFRAFDTHPMAGGYVC 1005
Query: 356 GRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRD-SD 414
GRF+TGI+PQE++FH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL YD +VR+ SD
Sbjct: 1006 GRFLTGIKPQEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLRAEYDTSVRESSD 1065
Query: 415 LSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLT 474
S++Q LYGEDGLD+TK+ +L D F FL N Y I+ +
Sbjct: 1066 GSIVQFLYGEDGLDITKQVHLKD--FDFLTSN------YVSIMQSV-------------- 1103
Query: 475 FKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKA-CPQPLISTFQPDAHFG 533
N H D + W++ A KK RK K P++S + P + G
Sbjct: 1104 -------NLTSDFH--NLEKDEVTAWHK---DAMKKVRKTGKVDAMDPVLSVYHPGGNLG 1151
Query: 534 SISENLADSVVKYTKGRTDASHVDK------------FYDMIFYKNLLSLANPGENVGVL 581
S SE + ++ KY D DK F ++ K L S+ +PGE VG++
Sbjct: 1152 STSEAFSQALKKYEDTNPDKLLRDKKKNIDGLISKKAFNTLMNMKYLKSVVDPGEAVGIV 1211
Query: 582 AAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPK 641
A+QSIGEPSTQMTLNTFH AG NVTLGIPRLREI+M A+ I TP+M + ++ K
Sbjct: 1212 ASQSIGEPSTQMTLNTFHLAGHSAKNVTLGIPRLREIVMTASAHIMTPTMTLILNEELSK 1271
Query: 642 LEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCFIPAHMYRDKTSVKP 701
+ + R AK+++++++A+V++KVK+KE + + Y ++ PA Y + ++
Sbjct: 1272 --EHSERFAKAISKLSIAEVIDKVKVKERIATAGSRFKVYDVEIALFPAEEYTKEYAITT 1329
Query: 702 SKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQM---EDDVEDDEGEGAEGAGAA 758
+ + + KF+ +L K LK N E+S + ++ G EG
Sbjct: 1330 KDVQNTLQNKFIPKL----VKLTRAELKRRNDEKSLKSFSTAQPEIGVSVGVIEEGPRGP 1385
Query: 759 LGRVD-VSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNTSNIGERFKI 817
V+ D+E DE+DA ++ N+ +E PE EE R++D + E
Sbjct: 1386 DREVEPAQDDDEDDEDDAKRARSGQNRSNQVSYEGPEQEEIDMVRQQDAVEDDEDEDESG 1445
Query: 818 EFR-------------------DSTNVFVKDVVNQHNIVHKYSYDKKNHMWC-------- 850
E R T + +D+ ++ V ++ ++ C
Sbjct: 1446 EDRRQDSDVDMDDSDEETDEETKDTKLREEDIKGKYGEVTQFKFNPSKGTSCVVQLQYDI 1505
Query: 851 ---KLLFLPSNLFEEK-------------------------ESKHLLKTDGINVNFISQY 882
KLL LP L EE E H++ T+G+N+ + Y
Sbjct: 1506 STPKLLLLP--LVEEAARSAVIQSIPGLGNCTYVEADPVKGEPAHVI-TEGVNLLAMRDY 1562
Query: 883 RHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHS 942
+ ++ + +Y N IH+M YG+EAA I+RE+ +VF + I VD RHL+L+ D MT S
Sbjct: 1563 QDIIKPHSIYTNSIHHMLMLYGVEAARASIVREMSDVFQGHSISVDNRHLNLIGDVMTQS 1622
Query: 943 GTYVAMNRNG-IRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGT 1001
G + A NRNG ++ + S + KM+FE + ++ A ++ D+L++PS+R++ G+ GT
Sbjct: 1623 GGFRAFNRNGLVKDSSSPLAKMSFETTVGFLKDAVIERDFDNLKSPSSRIVAGRSGMVGT 1682
Query: 1002 GLFQL 1006
G F +
Sbjct: 1683 GAFDV 1687
>gi|119495150|ref|XP_001264366.1| DNA-directed RNA polymerase I subunit (Rpa190), putative [Neosartorya
fischeri NRRL 181]
gi|119412528|gb|EAW22469.1| DNA-directed RNA polymerase I subunit (Rpa190), putative [Neosartorya
fischeri NRRL 181]
Length = 1681
Score = 555 bits (1429), Expect = e-155, Method: Compositional matrix adjust.
Identities = 381/1086 (35%), Positives = 560/1086 (51%), Gaps = 146/1086 (13%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
+ +AEA L + QYLV G PL GLIQDH+ G + RD F +Y L+Y
Sbjct: 649 NELARAEAMMLADADHQYLVATSGKPLRGLIQDHISMGTWFTCRDAFFDEEDYHELLYSC 708
Query: 69 LCILNT-----EIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDK 123
L N+ I+ + PT+ KP LWTGKQV++T++ N+ P + + S D+
Sbjct: 709 LRPENSHTITERIQLVEPTLLKPKRLWTGKQVITTILRNIMPPGRAGLNLKSKSSTPGDR 768
Query: 124 KQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLL 183
G+ + V + GE+L GILDKKQ G T GL+ A+ + +G A L+
Sbjct: 769 WGEGNEE---------GTVIFKDGEMLCGILDKKQIGPTAGGLIDAIHEVYGHTIAGRLI 819
Query: 184 SCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDP 243
S L +L T YL FT G+ D+ + +E DR R + +++A +G E A + L T P
Sbjct: 820 SILGRLLTRYLNMRAFTCGIDDLRLTKEGDRLRKEKLSQAASIGREVALKYVTLDQTTVP 879
Query: 244 EIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTN--------NINQVCLPEGLIEPFPAN 295
+ Q E + D+Q S LD V+N I Q CLP+GL +PFP N
Sbjct: 880 D----QDAELRRRLEDVLRDDDKQ--SGLDSVSNARTAKLSTEITQACLPKGLAKPFPWN 933
Query: 296 NLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVD 355
+Q M SGAKGS+VN ISC LGQ LEG+R +M+SG+TLPSF ++ P AGG+V
Sbjct: 934 QMQSMTISGAKGSSVNANLISCNLGQQVLEGRRVPVMISGKTLPSFRAFDTHPMAGGYVC 993
Query: 356 GRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRD-SD 414
GRF+TGI+PQE++FH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL YD +VR+ SD
Sbjct: 994 GRFLTGIKPQEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLRAEYDTSVRESSD 1053
Query: 415 LSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLT 474
S++Q LYGEDGLD+TK+ +L D F FL N Y I+ +
Sbjct: 1054 GSIVQFLYGEDGLDITKQVHLKD--FDFLTSN------YVSIMQSV-------------- 1091
Query: 475 FKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKA-CPQPLISTFQPDAHFG 533
N H D + W++ A KK RK K P++S + P + G
Sbjct: 1092 -------NLTNDFH--NLEKDEVTAWHK---DAMKKVRKTGKVDAMDPVLSVYHPGGNLG 1139
Query: 534 SISENLADSVVKYTKGRTDASHVDK------------FYDMIFYKNLLSLANPGENVGVL 581
S SE + ++ KY D DK F ++ K L S+ +PGE VG++
Sbjct: 1140 STSEAFSQALKKYEDANPDKLLRDKKKNIDGLISKKAFNTLMNMKYLKSVVDPGEAVGIV 1199
Query: 582 AAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPK 641
A+QSIGEPSTQMTLNTFH AG NVTLGIPRLREI+M A+ I TP+M + ++ K
Sbjct: 1200 ASQSIGEPSTQMTLNTFHLAGHSAKNVTLGIPRLREIVMTASAHIMTPTMTLILNEELSK 1259
Query: 642 LEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCFIPAHMYRDKTSVKP 701
+ + R AK+++++++A+V++KV++KE + + Y ++ F PA Y + ++
Sbjct: 1260 --EHSERFAKAISKLSIAEVIDKVQVKERIAAAGSRSKVYDVEISFFPAEEYTKEYAITT 1317
Query: 702 SKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQM---EDDVEDDEGEGAEGAGAA 758
+ + + KF+ +L K LK N E+S + ++ G EG
Sbjct: 1318 KDVQNTLQNKFIPKL----VKLTRVELKRRNDEKSLKSFSTAQPEIGVSVGVIEEGPRGP 1373
Query: 759 LGRVD-VSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNTSNIGERFKI 817
V+ D+E DE+DA ++ N+ +E PE EE R++D + E
Sbjct: 1374 DREVEPAQDDDEDDEDDAKRARSGQNRSNQVSYEGPEQEEIDMVRQQDAVEDDEDEDESG 1433
Query: 818 EFR--------------------DSTNVFVKDVVNQHNIVHKYSYDKKNHMWC------- 850
E R T + +D+ ++ V ++ ++ C
Sbjct: 1434 ENRRQDSDVDMEDDSDEETDDETKDTKLREEDIKGKYGEVTQFKFNPSKGTSCVVQLQYD 1493
Query: 851 ----KLLFLPSNLFEEK-------------------------ESKHLLKTDGINVNFISQ 881
KLL LP L EE E H++ T+G+N+ +
Sbjct: 1494 ISTPKLLLLP--LVEEAARSAVIQSIPGLGNCTYVEANPLKGEPAHVI-TEGVNLLAMRD 1550
Query: 882 YRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 941
Y+ ++ + +Y N IH+M YG+EAA I+RE+ +VF + I VD RHL+L+ D MT
Sbjct: 1551 YQDIIKPHSIYTNSIHHMLMLYGVEAARASIVREMSDVFQGHSISVDNRHLNLIGDVMTQ 1610
Query: 942 SGTYVAMNRNG-IRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQG 1000
SG + A NRNG ++ + S + KM+FE + ++ A ++ D+L++PS+R++ G+ G
Sbjct: 1611 SGGFRAFNRNGLVKDSSSPLAKMSFETTVGFLKDAVIERDFDNLKSPSSRIVAGRSGMVG 1670
Query: 1001 TGLFQL 1006
TG F +
Sbjct: 1671 TGAFDV 1676
>gi|322695488|gb|EFY87295.1| DNA-directed RNA polymerase I subunit RPA1 [Metarhizium acridum CQMa
102]
Length = 1673
Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust.
Identities = 378/1077 (35%), Positives = 553/1077 (51%), Gaps = 127/1077 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL--- 69
+AEA + + QYL G PL GLIQDH+ L RDTF +R +Y +LVY A+
Sbjct: 628 RAEALHIADTDHQYLSGTQGKPLRGLIQDHISISIALCSRDTFFSRGDYHSLVYCAIRPE 687
Query: 70 --CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
I I+ +PP I KP+P WTGKQV+ST++ N P I +G L + + Q
Sbjct: 688 SGHIFGERIQLVPPAIIKPVPRWTGKQVISTILKNTQP-----INYGAL--NLRGESQIK 740
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
+ Q+G + V I+ GE ++GILDK Q G + GL+HA+ + HG A LLS L
Sbjct: 741 AEQWG--PKSEEGTVLIQEGEFVTGILDKSQIGQSSGGLIHAIHEIHGPAIASKLLSALG 798
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPE--I 245
+L T YL F+ GV D+ + + + R + + R+G E A N + L +D + +
Sbjct: 799 RLLTRYLNMRAFSCGVDDLKLTAKGEEARRQELQAINRVGLEVASNYVSLKDVSDSQNPV 858
Query: 246 ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGA 305
+ +L+E + +D ++T+ + +VC+P GL +PFP N +Q M SGA
Sbjct: 859 LLERLEEVLRDDTKLEG-LDLLMNHTTREITDKVQKVCIPNGLEKPFPRNQMQAMTTSGA 917
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS VN ISC LGQ LE +R +MVSG++LP F P+E + A G++ RF+TGI+PQ
Sbjct: 918 KGSRVNASLISCNLGQQVLESRRVPIMVSGKSLPCFKPFETNITANGYIGSRFLTGIRPQ 977
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
E++FH MAGREGLIDTAVKTSRSGYLQRC++K LEGL V YD TVRD+D S+IQ LYGED
Sbjct: 978 EYYFHHMAGREGLIDTAVKTSRSGYLQRCVIKGLEGLMVAYDTTVRDADGSIIQFLYGED 1037
Query: 426 GLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIF 485
GLDVTK+ YL D F F+ N+ + L+ P + L G +F
Sbjct: 1038 GLDVTKQTYLKD--FGFILRNLTSEVAQ------LRYDPQVVKRL--------GADRELF 1081
Query: 486 SPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQP--------DAHFGSISE 537
TK+ ++ D K R PLIS F P +A + ++S
Sbjct: 1082 ----TKYMKSAVKHSKPGDPKGR-----------DPLISAFNPATNAFVLSEAFYNAMSS 1126
Query: 538 NL---ADSVV--KYTKGRTDASHV--DKFYDMIF-YKNLLSLANPGENVGVLAAQSIGEP 589
L AD +V K K D+SH K +++F K L SL PGE VG++A QS+GEP
Sbjct: 1127 YLKANADGLVREKGNKSAPDSSHALNRKNAEVLFAMKYLQSLVEPGEAVGIVAGQSVGEP 1186
Query: 590 STQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRL 649
STQMTLNTFH AG NVT GIPRLREILM A+K I TP+M + + K E +A
Sbjct: 1187 STQMTLNTFHLAGHAAKNVTAGIPRLREILMTASKDISTPAMSLYPHDSLSKQEAEA--F 1244
Query: 650 AKSMTRITMADVLEKVKIKEWLEISPEPHMN--YQMKFCFIPAHMYRDKTSVKPSKIIDH 707
S++ + ++ +L+ V ++E + + Y +K F P+ Y + S ++D
Sbjct: 1245 TNSISALPLSYILDSVVVEEKVGRGKMFGLAKIYLIKLKFFPSQEYFETHHASISDVLDA 1304
Query: 708 FERKFLKELEVAIAKR-----------------AAQGLKNMNIEQSRDQMEDDVEDDEGE 750
E++ ++ + VA++K A G+ M + +DD +
Sbjct: 1305 VEKRLIRHI-VALSKAEVKKRALDATAATPDVGAKAGVVEMAASSAGTVGDDDDNGGDDA 1363
Query: 751 GAEGAGAALGRVD----VSSDEERDEEDAVQSHKKVNQEEDN-DFEE----PEDEERMSE 801
G + +A R + VS D +D +Q D D E P+ +E SE
Sbjct: 1364 GDDDFTSAKQRANRLEAVSYGPNDDADDEIQKAMDEGAAADELDVESLDGNPQGKEATSE 1423
Query: 802 REEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLL-------- 853
E++ + E K+ +S + + V+ V + YD+ + C +
Sbjct: 1424 DEDESAERKVAETAKLRAAESVKIRAQRVLYMFTEVTGFEYDETDGDECNVTLEFDAKVP 1483
Query: 854 -FLPSNLFEEKESKHLLK-----------------------TDGINVNFISQYRHLLDLN 889
FL N+ + K +++ G N+ I +Y +D +
Sbjct: 1484 KFLMLNVVQRAIKKTMVREIPGIGACRMDEQSAGGKERVIHVTGANIRAIQKYSDYIDPD 1543
Query: 890 KLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMN 949
++ NDI + S YG+EA I+RE+ VF +GI+VD RHL+L+ADYMT +G + A +
Sbjct: 1544 RIQTNDIAAVLSMYGVEACRSNIVRELAGVFGSHGIKVDNRHLNLIADYMTRNGDFTAFS 1603
Query: 950 RNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
R G+R N S KM+FE L ++ A + G D L PS R+++G+ + GTG F +
Sbjct: 1604 RMGLRGNVSPFTKMSFETTLAFLKDAVLDGDWDELATPSGRLVMGRLGKLGTGSFDV 1660
>gi|169623425|ref|XP_001805120.1| hypothetical protein SNOG_14953 [Phaeosphaeria nodorum SN15]
gi|160704980|gb|EAT77805.2| hypothetical protein SNOG_14953 [Phaeosphaeria nodorum SN15]
Length = 1691
Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust.
Identities = 372/1096 (33%), Positives = 544/1096 (49%), Gaps = 187/1096 (17%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
+ +AEA + + QYL G PL GLIQDH+ G ++ +DTF TR EY L+Y
Sbjct: 651 NELARAEAMTVADTDHQYLSATAGKPLRGLIQDHISMGVWITNKDTFFTREEYHQLLYSC 710
Query: 69 L-----CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDK 123
L + + T+ P IWKP+PLWTGKQ+ +TV+ N+ P +
Sbjct: 711 LRPEDGHTTSGRLETVDPAIWKPVPLWTGKQIFTTVLKNVKPAE---------------- 754
Query: 124 KQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLL 183
D +T+ G G ++ V++ +G A +L
Sbjct: 755 -------------YQDLTMTL--------------LGPAGGGFINGVYEAYGETIAGRVL 787
Query: 184 SCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDT-- 241
S + +L T L F+ GV D+++ +E DR R + ++KA+ G + A + L
Sbjct: 788 SIIGRLLTKLLHMRAFSCGVEDLILTEEGDRARIEELSKAQTSGFKVATEYVTLDASKID 847
Query: 242 --DPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQF 299
+PE+ ++++ + R +D + +++ + CLP LI+PFP N +Q
Sbjct: 848 PMNPEL-RRRMEDVLRDDEKQRG-LDMLTTTANSQISAAVTTACLPGQLIKPFPKNQMQA 905
Query: 300 MVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFM 359
M SGAKGS VN QISC LGQ LEG+R +MVSG+TLP F P+E S RAGG++ RF+
Sbjct: 906 MTGSGAKGSLVNANQISCNLGQQVLEGRRVPVMVSGKTLPCFKPFETSVRAGGYIVNRFL 965
Query: 360 TGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQ 419
TGI+PQE++FH MAGREGLIDTAVKTSRSGYLQRC++K +EGL V YD +VRDSD S++Q
Sbjct: 966 TGIRPQEYYFHMMAGREGLIDTAVKTSRSGYLQRCIIKGMEGLHVEYDTSVRDSDGSMVQ 1025
Query: 420 VLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSG 479
LYGEDGLD+TK++YL D F F +N LSLA T ++
Sbjct: 1026 FLYGEDGLDITKQKYLND--FKFQAENF-----------------LSLA----QTLQTQA 1062
Query: 480 KPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENL 539
++SP T+ + KA KK RK P ++ ++P H GS SE
Sbjct: 1063 AFGRVWSPEATEH-----------NKKASKKARKGDITSMDPALALYEPSRHSGSTSEKF 1111
Query: 540 ADSVVKYTKGRTDASHV------------DKFYDMIFYKNLLSLANPGENVGVLAAQSIG 587
+ +YT+ D F M+ K L SL PGE VGV+A QSIG
Sbjct: 1112 YQAKREYTEKNPDKLLKHKKKDPEGEILKKSFEQMLDLKYLRSLVEPGEAVGVVAGQSIG 1171
Query: 588 EPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKAN 647
EPSTQMTLNTFH AG NVTLGIPRLREI+M A+ I TP M++ P E+
Sbjct: 1172 EPSTQMTLNTFHLAGHAAKNVTLGIPRLREIVMTASAKISTPGMQL--YPHKELSEEDNK 1229
Query: 648 RLAKSMTRITMADVLEKVKIKEWLEISPEPHMN--YQMKFCFIPAHMYRDKTSVKPSKII 705
+ AKS+TR+ +ADVL+KV + E + Y+++ F PA Y + ++K +
Sbjct: 1230 KFAKSITRLPLADVLDKVTVTESTGQGTQYSQARIYKVRLDFYPAKEYTQEYAIKVRDVA 1289
Query: 706 DHFERKFLKELEVAI---------------AKRAAQ----GLKNMNIEQSRDQMEDDVED 746
+ E+KF L+ AI AK + G N NIEQ Q DD
Sbjct: 1290 ESIEQKFCPRLQKAIRADLKKKGENTSLSTAKASGAVPNVGQSNRNIEQQTAQEVDD--- 1346
Query: 747 DEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERM------- 799
A A G D SD+ E D + ++ +E+ +E+PE+EE+
Sbjct: 1347 -----ATAADKEGGPEDDDSDDGEGEGDVTHTKQRGRREDSVGYEDPEEEEQAMNDALDR 1401
Query: 800 SEREEDDNT------------------SNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYS 841
E DD T + ER + ++++V + ++ V +
Sbjct: 1402 VEAPSDDETYGGSPKPSRNSTPELDSDDDDDERLLVPTDEASDVRKDRITGKNTDVSDFV 1461
Query: 842 YDKKNHMWCKLLF-----------------------------LPSNLFE--EKESKHLLK 870
+D K +C++ F + S ++ K + +
Sbjct: 1462 FDDKKGAFCEITFEFSSSAAKLLMLNHVEAAASFATIHVIPGITSAMYSAAAKGEEAAII 1521
Query: 871 TDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 930
T G N+ + +Y H++D+N+++ NDI M YG+EA I+RE+ VF+ +GI VD R
Sbjct: 1522 TAGSNLLAMREYSHIIDVNRIFTNDIVGMLQLYGVEACRATIVREMHAVFSGHGISVDLR 1581
Query: 931 HLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSAR 990
HL+L+AD MT G + NR G++ N S KM+FE + ++ A ++ D L PSAR
Sbjct: 1582 HLNLIADTMTKGGGFTPFNRIGLKTNVSPFSKMSFETTVGFLKDAVLERDWDDLSNPSAR 1641
Query: 991 VMLGQECRQGTGLFQL 1006
+++G+ + GTG F +
Sbjct: 1642 IVVGRLGKLGTGAFDV 1657
>gi|453084899|gb|EMF12943.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Mycosphaerella populorum SO2202]
Length = 1742
Score = 553 bits (1424), Expect = e-154, Method: Compositional matrix adjust.
Identities = 365/1085 (33%), Positives = 541/1085 (49%), Gaps = 140/1085 (12%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
+ +AEA + + QY+ G+PL GLIQDH+ L RD F R +YMN++Y A
Sbjct: 664 NELARAEALTIADTDHQYISATAGNPLRGLIQDHISMSVFLCSRDMFFERGDYMNMLYAA 723
Query: 69 L------CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILD 122
L C+ N + T+PP I KP PLWTGKQV+S+V+ NLTP HG +
Sbjct: 724 LRPEDGHCV-NGRMETVPPAIIKPKPLWTGKQVISSVLKNLTP-------HGAQGLTLNS 775
Query: 123 KKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISL 182
K T +G + V + GEL+ GILDKKQ G + G V+AV++ +G A L
Sbjct: 776 KSTTAETMWG-PGGKGEAEVIFKDGELVQGILDKKQIGPSSGGFVNAVYEAYGHTIAGRL 834
Query: 183 LSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL----P 238
LS L +L T F+ GV D++ + + R K + A +G + + L P
Sbjct: 835 LSVLGRLLTKLEHMRAFSCGVEDVIFTRNGEVNRRKALAGADTVGLSVSAKYVTLDSQKP 894
Query: 239 LDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQ 298
D E+ +L++ + +D + K+++ ++ C+P GL +PFP N +Q
Sbjct: 895 KSNDREL-RRRLEDVLRDDTKLHT-LDALMNAETGKLSSEVSNTCMPAGLSKPFPKNQMQ 952
Query: 299 FMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRF 358
M SGAKG+ VN ISC LGQ LEG+R +MVSG+TLP F P+E S RAGG++ RF
Sbjct: 953 TMTMSGAKGTKVNANLISCNLGQQVLEGRRVPVMVSGKTLPCFKPFETSVRAGGYIVDRF 1012
Query: 359 MTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDS-DLSL 417
+TGI+PQE+FFH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL V YD +VR++ D S+
Sbjct: 1013 LTGIRPQEYFFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLRVEYDSSVRNTEDGSI 1072
Query: 418 IQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKS 477
+Q LYGEDGLD+ K +Y+ D F F +N L+L + A L++
Sbjct: 1073 VQFLYGEDGLDIGKAKYMND--FKFTAENY---------LSLFHSMNMGEAFGNLVS--- 1118
Query: 478 SGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFK-ACPQPLISTFQPDAHFGSIS 536
E + A K+YRK P +S + P H GS+S
Sbjct: 1119 --------------------EDAKDANKAAEKRYRKTGDLGASDPALSQYPPGRHIGSVS 1158
Query: 537 ENLADS-----------VVKYTKGRTDASHVDKFYDMIF-YKNLLSLANPGENVGVLAAQ 584
EN+ S ++K K + + K ++ I + + S+ GE VGV+A Q
Sbjct: 1159 ENILASSREWIDKNEMRLIKDKKKNIEGTVSKKNFNHILDVRYMKSVVEAGEAVGVVAGQ 1218
Query: 585 SIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEK 644
S+GEPSTQMTLNTFH AG NVTLGIPRLREI+M A I TP M + + + +E+
Sbjct: 1219 SVGEPSTQMTLNTFHLAGHSAKNVTLGIPRLREIVMTAASKISTPQMTL-RMGNGTSVEE 1277
Query: 645 KANRLAKSMTRITMADVLEKVKIKEWLE--ISPEPHMNYQMKFCFIPAHMYRDKTSVKPS 702
A + AK ++++ +A++++KV + E + I+ Y+++ F P+ Y+ + ++
Sbjct: 1278 -AKKFAKGISKLALAEIVDKVTVSETIGKGIAYGEAKKYEIRLDFFPSEEYKKEYAITIG 1336
Query: 703 KIIDHFERKFLKELEVAI------------------AKRAAQGLKNMNIEQSRDQMEDDV 744
++ E++ L L+ A+ A A G IEQ R Q +
Sbjct: 1337 DVVHTIEKELLPWLQTAVRKQIKKSGGMNTIKAVEKAMAAEVGESAGAIEQERAQPQAGR 1396
Query: 745 EDDEGEGAEGAGAALGRVDVSS-------DEERDEEDAVQSHKKVNQEEDNDFEEPEDE- 796
E + + R S D++ D+ED ++ KK N + +P+DE
Sbjct: 1397 EGGDDDSDGEGDDDATRDKSKSNKQQGGYDDQEDDED--RALKKRNATPELQGHDPDDEG 1454
Query: 797 ---------------ERMSEREEDDNTSNIGERFKIEFRDSTN---VFVKDVVNQHNIVH 838
+ S + + + +I +TN F D +
Sbjct: 1455 YRSSRSSSPDDSDDPTKTSSSKRSNTITAAAREQRIRGDGATNDVASFSFDDETGSHCAF 1514
Query: 839 KYSYDKKNHMWCKLLFLPSNLFE---------------------EKESKHLLKTDGINVN 877
YD L + +L E ++ ++ T G+NV
Sbjct: 1515 TLEYDSSTAKILMLALVEKSLHEALIQSVSGIQNAAVDESDKPKSADAPAVVLTSGVNVR 1574
Query: 878 FISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVAD 937
+ Y+H+++ + +Y N + + YG+EA I+RE++ VF +GI VDPRHL L+AD
Sbjct: 1575 AMWDYQHIINPHYIYTNSCFDIFTNYGVEAGRAAIVRELQGVFGGHGISVDPRHLMLIAD 1634
Query: 938 YMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQEC 997
YMT G Y A +R G R N S KM+FE + +++A M G D L PSA++++G
Sbjct: 1635 YMTRGGGYQAFSRMGYRANVSPFMKMSFETTVGFLKEAVMNGEGDDLAGPSAKIVVGNVN 1694
Query: 998 RQGTG 1002
R GTG
Sbjct: 1695 RMGTG 1699
>gi|336271863|ref|XP_003350689.1| hypothetical protein SMAC_02360 [Sordaria macrospora k-hell]
gi|380094851|emb|CCC07353.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1701
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 373/1074 (34%), Positives = 568/1074 (52%), Gaps = 134/1074 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL--- 69
+AEA L + QY+ G PL GLIQDH+ L +DTF RA Y L+Y AL
Sbjct: 669 RAEALQLADTDHQYISGTAGKPLRGLIQDHLSVSVILCNKDTFFDRANYHQLIYAALRPE 728
Query: 70 --CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL-LSGILDKKQF 126
I+ +I +PP I KP+P WTGKQV++T++ N+ P + G+L ++G Q
Sbjct: 729 SGHIMGDKIELVPPAIIKPVPRWTGKQVITTILKNIKPPN-----CGDLWMNG---STQV 780
Query: 127 GSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCL 186
+ Q+G HA + VT R GE ++GILDK Q G + G +H++ + +G A LLSC+
Sbjct: 781 KAHQWG-DHAPEEGQVTFRDGEFVTGILDKSQLGPSSGGFIHSIHEVYGPSAAGKLLSCM 839
Query: 187 AKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL----PLDTD 242
+L T YL V F+ G+ D+++ + + R + I A +G E A + L P D
Sbjct: 840 GRLLTRYLAMVAFSCGMDDLVMTPKGEADRREKIKAAADIGLEVAAKYVSLEEQKPTPED 899
Query: 243 PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
P ++ +L+E + + + +D ++++ I + CLP GL + FP N +Q M
Sbjct: 900 P-LLLQRLEEVMRNDKK-QENLDLLMNQRCAQLSSEITKTCLPAGLQKKFPKNQMQSMTT 957
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
SGAKGS VN ISC LGQ LEG+R +MVSG+TLPSF P++ + RAGG++ RF+TGI
Sbjct: 958 SGAKGSPVNANLISCNLGQQVLEGRRVPVMVSGKTLPSFKPFDTNARAGGYIVQRFLTGI 1017
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
+PQE++FH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL V YD +VRDSD S+IQ L+
Sbjct: 1018 RPQEYYFHHMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKVSYDSSVRDSDGSIIQFLF 1077
Query: 423 GEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPN 482
GEDGLD++K++YL D +F ++ N+ + L L + G
Sbjct: 1078 GEDGLDISKQKYLNDFEF--------------ILRNMTSE-------LAHLHYSEEG--- 1113
Query: 483 FIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACP-QPLISTFQPDAHFGSISENLAD 541
T L E + + + + + P P+ + P + + SEN +
Sbjct: 1114 ----------TQALFEHKDSMIKQMKAALKSRGTRNPLNPIQTDVDPALYAFATSENFFE 1163
Query: 542 SVVKYTKGRTDASHVDKFYD------------MIFYKNLLSLANPGENVGVLAAQSIGEP 589
+ KY K D +K D ++ K + S+ PGE VG++A QS+GEP
Sbjct: 1164 KMTKYVKENKDGLIKEKKSDSSGVVVRKTAEKILAAKYIRSMVEPGEAVGIVAGQSVGEP 1223
Query: 590 STQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRL 649
STQMTLNTFH AG NVTLGIPRLREILM A+ I TP+M + P+ + +
Sbjct: 1224 STQMTLNTFHLAGHSAKNVTLGIPRLREILMTASSKISTPAMTL--YPNEELSDADCEQF 1281
Query: 650 AKSMTRITMADVLEKVKIKEWLEIS---PEPHMNYQMKFCFIPAHMYRDKTSVKPSKIID 706
AKS++ + +ADV ++V ++E + P + ++++ F P+ Y +++ + ++
Sbjct: 1282 AKSISILPLADVTKEVTVREKMGRGLGYPLAKL-FEIRLRFFPSEEYCKTYAIEIADVLA 1340
Query: 707 HFERKFL--------KELEVAIAKRAAQ----GLKNMNIEQSRDQMEDDVEDDEGEGAEG 754
ERKF+ KE++ + +A G+K +E + E + +D +
Sbjct: 1341 TVERKFVPLLGQLTRKEIKKKYKENSAATPEIGVKVGTVEMAAPDGERAIGEDGDAEDDD 1400
Query: 755 AGA-----ALGRVD----VSSDEERDEEDAVQ-SHKKVNQEEDNDFEEPE-DEERM--SE 801
G A R + VS D++DA+Q S ++ + +E+ E E D+E S
Sbjct: 1401 DGDDDATNAKHRANRHEAVSYGPNDDDDDAIQKSLQRADDDEEEGEERLEFDDEGYGGSP 1460
Query: 802 REEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLL--FLPS-- 857
ED N +K R++ +KD +++ V ++ D++ WC+++ F P+
Sbjct: 1461 EPEDRNADGDMSVYKSRSRETR---IKD---KNDFVARFKCDEQGGEWCEMILEFDPATP 1514
Query: 858 -----NLFEEKESKHLLK--------------------TDGINVNFISQYRHLLDLNKLY 892
NL E K L++ T+G N+ + QY ++ NK+
Sbjct: 1515 KILMLNLVTEAVKKALIQQIPRLGTATSVVENNERMVHTEGSNIKAMQQYADYINPNKIM 1574
Query: 893 VNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNG 952
NDI M YG+EAA I+RE+ VF +GI VDPRHL+L+ D+MT +G + NR G
Sbjct: 1575 TNDIAQMLEIYGVEAARNSIVRELSGVFKGHGIGVDPRHLNLIGDFMTRNGGFTPFNRMG 1634
Query: 953 IRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+ N S KM++E + ++ A + G DSL PS R+++G+ GTG F +
Sbjct: 1635 LTGNVSPFTKMSYETTVGFLKDAVLDGDWDSLDTPSGRLVVGKLGVTGTGSFDV 1688
>gi|452981607|gb|EME81367.1| hypothetical protein MYCFIDRAFT_64562 [Pseudocercospora fijiensis
CIRAD86]
Length = 1625
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 360/1040 (34%), Positives = 532/1040 (51%), Gaps = 127/1040 (12%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
+ +AEA + + QYL G+PL GLIQDH+ L+ RD F R +YMNL+Y A
Sbjct: 643 NELARAEALSIADTDHQYLSGTAGNPLRGLIQDHISMCVWLTSRDMFFERGDYMNLLYAA 702
Query: 69 L------CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILD 122
L C N ++ T+PP ++KP P+WTGKQV+ST++ NL P+ G ++G
Sbjct: 703 LRPESGHCS-NGKVETVPPAVFKPKPMWTGKQVVSTILKNLQPQGA----QGLTMNG--- 754
Query: 123 KKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISL 182
K +T +G V + V ++ G+LL GILDKKQ G G V+AV++ +G A L
Sbjct: 755 KSTTPATMWGKV-GKDEGEVIVKDGDLLQGILDKKQIGPASGGFVNAVYEAYGHTIAGKL 813
Query: 183 LSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTD 242
LS L +L T L F+ GV D++ + + R K + A+ +G E A + L D
Sbjct: 814 LSVLGRLLTKLLHMRAFSCGVEDLIFTRNGEESRQKALAGAQTVGLEVASKYVSLQ-DQK 872
Query: 243 PEIISSQLQEAYASIPQFRAQI---DRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQF 299
P +L+ + + A++ D + ++++ ++ C+P GL +PFP N +Q
Sbjct: 873 PTSEDKELKRRLEDVVREDAKLHGLDLLSNAATAQLSSQVSTDCMPAGLAKPFPKNQMQT 932
Query: 300 MVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFM 359
M SGAKGS VN ISC LGQ LEG+R +MVSG+TLP F P++ S RAGG++ RF+
Sbjct: 933 MTNSGAKGSKVNVNLISCNLGQQVLEGRRVPVMVSGKTLPCFAPFDSSVRAGGYIVDRFL 992
Query: 360 TGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDS-DLSLI 418
TGI+PQE+FFH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL V YD TVR++ D S++
Sbjct: 993 TGIRPQEYFFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLRVEYDTTVRNTEDGSVV 1052
Query: 419 QVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSS 478
Q LYGEDGLDV K +Y+ D + F +N L+L + A LL+
Sbjct: 1053 QFLYGEDGLDVGKAKYMDD--YKFTAEN---------YLSLFNSMQMGEAFDRLLS---- 1097
Query: 479 GKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFK-ACPQPLISTFQPDAHFGSISE 537
++ + A KK+RK P I+ + P H G+ISE
Sbjct: 1098 -------------------QEAKDHNKAAEKKFRKTGDLGSSDPAIALYSPANHVGAISE 1138
Query: 538 NLADSVVKYTKG------RTDASHVD--------KFYDMIFYKNLLSLANPGENVGVLAA 583
+ Y + R VD ++ + L S+ GE VGV+A
Sbjct: 1139 KQFTQIRDYIESNPHRLVRDKKQGVDGPSTLSKRNLEHILAVRYLKSVVESGEAVGVVAG 1198
Query: 584 QSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLE 643
QS+GEPSTQMTLNTFH AG NVTLGIPRLREI+M A K I TP M + L +
Sbjct: 1199 QSVGEPSTQMTLNTFHLAGHAAKNVTLGIPRLREIVMTAAKEISTPQMTL--LMNRGISA 1256
Query: 644 KKANRLAKSMTRITMADVLEKVKIKEWL--EISPEPHMNYQMKFCFIPAHMYRDKTSVKP 701
+ A + AK ++++++A++++KV + E + I Y ++ F P+ YR + ++
Sbjct: 1257 EDAKKFAKGISKLSLAEIIDKVTVSETVGKGIGYGEAKQYSIRLDFFPSDEYRREYAITV 1316
Query: 702 SKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGR 761
++ E L L+ + K LK + + +G AALG
Sbjct: 1317 QDVVRTIEHSLLPVLQKTVRKE----LKKRG---------------DAKTLKGVEAALGE 1357
Query: 762 VDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNTSNIGERFKIEFRD 821
V+ S E EE K + R+ + D T++I EF D
Sbjct: 1358 VESGSPEP--EESFRTDRKNIAA------------NRLDRIKGSDKTNDIAS---FEFDD 1400
Query: 822 STNVFVKDVVNQHNIVHK------YSYDKKNHMWCKLLFLPSNLFEEKESKHLLK----- 870
+ V+ + K +N + + + + +E+ K K
Sbjct: 1401 RKGSYCNFVMEYDSTTAKILMLNLLETSLRNSLIQHVDKIEGCMLDEEALKDAAKKSPDV 1460
Query: 871 -------TDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
G+N+ + ++H ++ N +Y N IH + YG+EAA I++E+++VF +
Sbjct: 1461 TPTPTLLASGVNIKAMWDFQHAINPNHIYTNSIHDILLYYGVEAARAAIVKELQSVFGGH 1520
Query: 924 GIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDS 983
GI VDPRHL L+ADYMT +G Y A +R G N S KM+FE + ++ A + G +
Sbjct: 1521 GISVDPRHLMLIADYMTRNGGYQAFSRMGYGSNVSPFMKMSFETTVSFLKDAVLNGEVED 1580
Query: 984 LRAPSARVMLGQECRQGTGL 1003
L+ PSAR+++G+ GTG+
Sbjct: 1581 LKGPSARIVVGKVGGMGTGM 1600
>gi|346323105|gb|EGX92703.1| DNA-directed RNA polymerase I subunit RPA1 [Cordyceps militaris CM01]
Length = 1929
Score = 550 bits (1418), Expect = e-153, Method: Compositional matrix adjust.
Identities = 365/1067 (34%), Positives = 563/1067 (52%), Gaps = 128/1067 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL--- 69
+AEA + + QYL G PL GLIQDH+ L RDTF T+ +Y +L+Y AL
Sbjct: 643 RAEALQIADTDHQYLSGTQGKPLRGLIQDHLSVSIVLCNRDTFFTKGDYHSLIYSALRPE 702
Query: 70 --CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKD-KVIIRHGELLSGILDKKQF 126
IL+ ++ +PP I KP+P WTGKQ+++T++ NL P + HG+ L +Q+
Sbjct: 703 SGHILSERLQLVPPAIIKPVPRWTGKQIITTILKNLKPATCGGLTMHGDTQ---LKAEQW 759
Query: 127 G-STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSC 185
G +++ G+V ++ GEL++GILDK Q G + GLVHA + +G+ A LLSC
Sbjct: 760 GPNSEEGVVR--------VQDGELITGILDKSQIGQSSGGLVHAAHEVYGSAIASKLLSC 811
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEI 245
L +L T L F+ G+ D+ + + ++ R + + +A +G + A + LP +T+P
Sbjct: 812 LGRLLTRLLNMQAFSCGMDDLRLTEVGEKARLEALEQAGVMGLKIASEYVSLPGNTNPTN 871
Query: 246 ISSQLQEAYASIPQFRAQ-IDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESG 304
+ + + +D +T+ + + CLP GL +PFP N +Q M SG
Sbjct: 872 NLLLERLEEVLREDKKQEGLDLLMNQGTRHITDGVQKACLPNGLEKPFPKNQMQAMTTSG 931
Query: 305 AKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQP 364
AKGS VN ISC LGQ LEG+R +MVSG+TLP F P+E R+ G++ RF+TGI+P
Sbjct: 932 AKGSRVNASLISCNLGQQVLEGRRVPLMVSGKTLPCFKPFETHIRSAGYIRSRFLTGIRP 991
Query: 365 QEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGE 424
E++FH MAGREGLIDTAVKTSRSGYLQRC++K LEGL V YD +VRD+D S+IQ LYGE
Sbjct: 992 HEYYFHHMAGREGLIDTAVKTSRSGYLQRCVIKGLEGLVVSYDASVRDADGSVIQFLYGE 1051
Query: 425 DGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFI 484
DGLDVTK++YL++ F F+ +N+ + ++ L + + G
Sbjct: 1052 DGLDVTKQKYLSN--FDFILENVA-------------------SQVVQLKYDTKGVETL- 1089
Query: 485 FSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVV 544
+ +R F M ++ KA K + K A PLI + P + ++SE +++
Sbjct: 1090 -TANRDDF-MKYMK-------KAVKHAKSKGSASKDPLIGLYNPTTNTFAMSELFYEAMS 1140
Query: 545 KYTKGRTDASHVDKFYD----------------MIFYKNLLSLANPGENVGVLAAQSIGE 588
Y K DK + K SL PGE VG++A QS+GE
Sbjct: 1141 TYVKENKSGLIRDKSSQKKTQNSVALSRKNAEALFALKYQRSLVEPGEAVGIVAGQSVGE 1200
Query: 589 PSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANR 648
PSTQMTLNTFH AG NVT GIPRLREILM A+ I TPSM + P ++A
Sbjct: 1201 PSTQMTLNTFHLAGHAATNVTQGIPRLREILMTASAIIATPSMTL--YPQSNISPEQAEI 1258
Query: 649 LAKSMTRITMADVLEKVKIKEWL---EISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKII 705
K ++R + +++ + ++E + +I + + Y++K F P+ Y ++ + ++
Sbjct: 1259 FTKKISRTPLGYIVDSITVEEQVGRGQIYSQAKV-YKIKLKFFPSDEYCQTYAITVADVM 1317
Query: 706 DHFERKFLKE----LEVAIAKRAAQ--------GLKNMNIE--------QSRDQMEDDVE 745
+ E+K +++ ++ I KR+ Q G+++ +E +SR+ ++D +
Sbjct: 1318 NSIEKKLMRQIIALMKKEIKKRSGQSTGATPEIGVRSGVVEVASAETNAESRNDDDNDDD 1377
Query: 746 DDEGEGAEGAGAALGR-VDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEE-RMSERE 803
D + A A R +VS + DE++A+Q K + Q+ +E EDE+ +
Sbjct: 1378 DGDDGDATSAKQRANRGEEVSYGDNDDEDNAIQ--KAMGQDA---ADESEDEQINGASNG 1432
Query: 804 EDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC-----------KL 852
+ E + E + +T + + V + D+K+ WC KL
Sbjct: 1433 APTGDDSEDESDEEENQAATTARAEGIKTSFKEVSDFECDEKDGAWCNITIELEPDSPKL 1492
Query: 853 LFLPSNLFEEKESKHLLK----------------TDGINVNFISQYRHLLDLNKLYVNDI 896
L L NL + SK +++ G+N++ + + +D +K+ NDI
Sbjct: 1493 LML--NLVKTAISKSMIREIRGVGTCTFVSGAIEASGVNLHAMQTFAEYIDPDKIKTNDI 1550
Query: 897 HYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLN 956
+ S YG+EA I+RE+ NVF +GI VD RHL+L+ADYMT +G + A +R G++ N
Sbjct: 1551 ASVLSMYGVEACRASIVRELGNVFGGHGISVDNRHLNLIADYMTRNGAFTAFSRMGLKGN 1610
Query: 957 PSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGL 1003
S KM+FE L ++ A + G D L PS R++LG+ + GTG
Sbjct: 1611 VSPFTKMSFETTLAFLKDAVLDGDWDDLTTPSGRLVLGRLGKLGTGF 1657
>gi|380492531|emb|CCF34539.1| RNA polymerase Rpb1 [Colletotrichum higginsianum]
Length = 1709
Score = 546 bits (1408), Expect = e-152, Method: Compositional matrix adjust.
Identities = 381/1090 (34%), Positives = 548/1090 (50%), Gaps = 149/1090 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL--- 69
+AEA + + QYL G PL GLIQDH+ L +DTF R Y L+Y AL
Sbjct: 659 RAEALQIADTDHQYLSGTAGKPLRGLIQDHLSVSVALCNKDTFFDRDSYQQLIYAALRPE 718
Query: 70 --CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
IL I +PP + KP P WTGKQV+ST++ N+ P + G +SG K Q
Sbjct: 719 SGHILGERIELIPPAVIKPRPRWTGKQVISTILKNIKPPNG----EGLWMSG---KCQVK 771
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
Q+G H + + V + G+ L+GILDK G + GL+H++ + +G A LLS +
Sbjct: 772 GEQWGKGH-LEEGSVLFQDGQFLTGILDKAHLGPSSGGLIHSIHEIYGPAVAGKLLSGMG 830
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL----PLDTDP 243
+L T YL FT G+ D+ + E + R + + A+ +G E A + L P TDP
Sbjct: 831 RLLTRYLNMRAFTCGMDDLRLTSEGEVARREALKAAKNIGLEVAAKYVSLDDKAPNSTDP 890
Query: 244 EIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVES 303
E++ +L+E + + +D V++ + CLP GL++ FP N +Q M S
Sbjct: 891 ELLV-RLEEVLRDDTK-QEGLDMLMNQSSQIVSSAVTTACLPIGLVKQFPKNQMQAMTTS 948
Query: 304 GAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQ 363
GAKGS VN ISC LGQ LEG+R +MVSG++LP F P+E RAGG++ RF+TGI+
Sbjct: 949 GAKGSQVNANLISCNLGQQVLEGRRVPVMVSGKSLPCFKPFETDVRAGGYIVQRFLTGIR 1008
Query: 364 PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYG 423
PQE++FH MAGREGLIDTAVKTSRSGYLQRC++K +EGLTV YD TVRD+D +L+Q LYG
Sbjct: 1009 PQEYYFHHMAGREGLIDTAVKTSRSGYLQRCIIKGMEGLTVTYDSTVRDADGTLVQFLYG 1068
Query: 424 EDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNF 483
EDGLD TK++YLTD FSF+ ++ + S LN LA G +
Sbjct: 1069 EDGLDPTKQKYLTD--FSFV---LRNVASESAQLNFGNGFKDKLA----------GSKDE 1113
Query: 484 IFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSV 543
I ++ L D P+IS P + SE +
Sbjct: 1114 ILKHMKSAIKHAKLNSTVAKD----------------PIISMVNPARVAFATSEKFYAKM 1157
Query: 544 VKYTKGRTDASHVDKF----------------YDMIFY-KNLLSLANPGENVGVLAAQSI 586
KY K D DK +++F K + SL GE VG++A QS+
Sbjct: 1158 TKYIKDNKDGLIRDKSSAPSGLINAPAVSKKSAELVFAAKYMRSLVEAGEGVGIVAGQSV 1217
Query: 587 GEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKA 646
GEPSTQMTLNTFH AG NVTLGIPRLREILM A+++I TP+M + ++ +E +
Sbjct: 1218 GEPSTQMTLNTFHLAGHSAKNVTLGIPRLREILMTASRSISTPAMTLLLHEELSAVEGEI 1277
Query: 647 NRLAKSMTRITMADVLEKVKIKEWLEISPEPHMN--YQMKFCFIPAHMYRDKTSVKPSKI 704
AKS++ + +ADVL+ + E + + Y ++ F PA Y ++ S +
Sbjct: 1278 --FAKSISVLPLADVLDTATVNERIGKGNNGALAKLYDVRLNFFPAKEYTKAYAIDTSDV 1335
Query: 705 IDHFERKF----LKELEVAIAKRAAQ--------GLKNMNIEQSRDQMEDDVEDDEGEG- 751
+D E++F LK + I KR ++ G+K +E + E V +D+ +
Sbjct: 1336 MDTVEKRFLDHLLKIMVREIKKRRSESTSATPDVGVKAGVVEMATGNSEARVPNDDDDDD 1395
Query: 752 ------AEGAGAALGRVD-VSSDEERDEEDAVQSH--KKVNQEEDNDF---EEPEDE--- 796
A A R + VS DE+DAVQ ++ + EED F P E
Sbjct: 1396 DDGDGDATNAKNKANREEAVSYGPNDDEDDAVQRQMEREGSPEEDEGFGGSPSPRREKDD 1455
Query: 797 ----------------------ERMSERE------EDDNTSNIGERFKIEFR-DSTNVFV 827
ER+ R +D E F +EF D+ V +
Sbjct: 1456 EEGDSEDDDSDGDSDSDYGWRAERVKSRYLRVTRFRNDEAGEWCE-FTLEFEADTPKVLM 1514
Query: 828 KDVVN---QHNIVHK--------YSYDKKNHMWCKLLFLPSNLFEEKESKHLLKTDGINV 876
++V + +++ + ++ D K + + E S + T G N+
Sbjct: 1515 LNIVQAAVKKSVIQQIPGVGSCTFTADHK---------ITDSTTGEDVSVPAIYTSGCNL 1565
Query: 877 NFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVA 936
+ +Y ++ NK+ NDI + YG+EA I+ E+ F +GI VD RHL+L+A
Sbjct: 1566 KAMQKYSDFINPNKIATNDIGAVLDVYGVEACRSNIVSELAGXFGGHGISVDNRHLNLIA 1625
Query: 937 DYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQE 996
DYMT +G Y NRNG+R N S KM+FE L ++ A + G D LR PS R+++G+
Sbjct: 1626 DYMTRNGDYTPFNRNGLRGNVSPFTKMSFETTLAFLKDAVLDGDWDDLRTPSGRIVMGRL 1685
Query: 997 CRQGTGLFQL 1006
+ GTG F +
Sbjct: 1686 GKIGTGAFDV 1695
>gi|406859187|gb|EKD12256.1| RNA polymerase Rpb1 [Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 1707
Score = 546 bits (1406), Expect = e-152, Method: Compositional matrix adjust.
Identities = 364/1092 (33%), Positives = 547/1092 (50%), Gaps = 138/1092 (12%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
+ +AEA + + QYLV G PL GLIQDH+ + RDTF RA Y L+Y
Sbjct: 651 TELARAEALQIADTDHQYLVATSGKPLRGLIQDHISVSVWMCNRDTFFDRATYQQLIYNC 710
Query: 69 L-----CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL-LSGILD 122
L I++ I T+PP I KP P WTGKQV++T++ N+ P D G L L+G
Sbjct: 711 LRPESGHIVSDRIETVPPAIIKPFPRWTGKQVITTILKNIKPID-----CGPLTLTG--- 762
Query: 123 KKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISL 182
K Q + ++G + V I+ GE ++GILDK Q G + G VHA+ + +G A L
Sbjct: 763 KSQTPADRWG--KNSEEGVVLIKGGEFITGILDKSQIGPSSGGFVHAIHEAYGPTAAGKL 820
Query: 183 LSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLP---- 238
LS L +L T +L FT GV D+ + + + R K + A+ LG + A + L
Sbjct: 821 LSALGRLLTKFLHMRAFTCGVDDLRLTAQGEEMRRKELAAAKDLGLKVAAKYVTLSADNR 880
Query: 239 LDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQ 298
DTDPE+++ E + +D ++++ I CLP GL++ FP N +Q
Sbjct: 881 TDTDPELLNRL--EVVMRDDTKQQGLDIMMNKRSGELSSAITAACLPAGLVKQFPKNQMQ 938
Query: 299 FMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRF 358
M SGAKGS VN ISC LGQ LEG+R +MVSG++LP F P+E RAGG++ RF
Sbjct: 939 NMTVSGAKGSAVNANLISCNLGQQVLEGRRVPIMVSGKSLPCFRPFETHMRAGGYIVNRF 998
Query: 359 MTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLI 418
+TGI+PQEF+FH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL V YD +VRDSD S++
Sbjct: 999 LTGIRPQEFYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKVEYDTSVRDSDGSMV 1058
Query: 419 QVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSS 478
Q LYGEDGLDVTK+++L D F FL N++ S LN
Sbjct: 1059 QFLYGEDGLDVTKQKHLMD--FKFLLQNLESELSQ---LN-------------------- 1093
Query: 479 GKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISEN 538
+ R + E + KA K P P+++ + P + + SE
Sbjct: 1094 ------YGDERYDTIFNDKEAILKRMKKALKHANANNPNGPDPVLADYNPGKYGYATSEK 1147
Query: 539 LADSVVKYTKGRTDASHVDK-----------FYDMIFYKNLLSLANPGENVGVLAAQSIG 587
D++ +Y K DA K ++ K L S+A PGE VG++A QSIG
Sbjct: 1148 FFDALTQYLKTDPDAMVKTKENPAGVGVRKALEAVLVAKYLKSVAEPGEAVGIVAGQSIG 1207
Query: 588 EPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKAN 647
EPSTQMTLNTFH AG NVTLGIPRLREI+M A+ I TPSM + ++ E +
Sbjct: 1208 EPSTQMTLNTFHLAGHSAKNVTLGIPRLREIVMTASNHISTPSMTLRLNSELSHDEGEI- 1266
Query: 648 RLAKSMTRITMADVLEKVKIKEWL--EISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKII 705
AK ++ +++A V+++ +KE + ++ + + P+ Y + ++ + ++
Sbjct: 1267 -FAKGISELSLAAVVDEATVKERIGRGVAYSQAKIFDIHIKLFPSKEYTETYAISIADVL 1325
Query: 706 DHFERKFLKELEVAIAKRAAQG-------LKNMNIEQSRDQMEDDVEDDEGEGAEGAGAA 758
E+KF L+ +++A G L +NI + +E + D +
Sbjct: 1326 SALEKKFAVRLQ-KFSRKALGGKRDIKATLAALNIGKPVRSIE-MAKPDAEGEDNEDESD 1383
Query: 759 LGRVDVSSDEERDEEDAVQSHKKVNQEEDN--------------------DFEEPEDEER 798
R + + DE+R S+ + ++D + +E E+
Sbjct: 1384 DERDETTKDEQRGNRSQAVSYAANDGDDDKVQAQMRKEAEAEEESDDDTENEKEDGVEDD 1443
Query: 799 MSEREEDDNTSNIGERFKIEFR-DSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKL----- 852
ED+ T N G+ IE + + V+ + + + +D++ WC L
Sbjct: 1444 TDNELEDEVTDNKGKNKPIETESEDADERQARVMKKCTDITNFRFDEEKGEWCDLTLEYQ 1503
Query: 853 ------------------------------LFLPS-NLFEEKESKHL----LKTDGINVN 877
F+P + + K + + T G+N+
Sbjct: 1504 ADVKKVLMLSVVEDALRQTLIQNIQGLGSCTFVPDEEVLDPANGKKIRVPVVHTTGVNLQ 1563
Query: 878 FISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVAD 937
+ +Y+ ++ N + NDI + + YG+EA I++E+ VF +GI VD RHL+L+AD
Sbjct: 1564 AMHEYQQFINPNTISTNDIAAILTIYGVEACRAAIVQELSGVFGGHGISVDHRHLNLIAD 1623
Query: 938 YMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQEC 997
+MT G + NRNG+R + S KM+FE ++ + A + G D L +PS+R+++G+
Sbjct: 1624 FMTRGGGFSPFNRNGLRGSVSPFMKMSFETTVDFLADAVIDGDWDDLSSPSSRIVIGRTS 1683
Query: 998 RQGTGLFQLRNR 1009
+ GTG F + R
Sbjct: 1684 KVGTGAFDVLTR 1695
>gi|239607218|gb|EEQ84205.1| DNA-directed RNA polymerase I subunit [Ajellomyces dermatitidis ER-3]
Length = 1646
Score = 546 bits (1406), Expect = e-152, Method: Compositional matrix adjust.
Identities = 382/1091 (35%), Positives = 570/1091 (52%), Gaps = 155/1091 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA L + QYL G PL GLIQDH+ G + RDTF + +Y L+Y L
Sbjct: 609 RAEAMQLADTDHQYLSATAGKPLRGLIQDHISMGTWFTSRDTFFDKDDYYQLLYSCLRPE 668
Query: 73 NTEIRT-----LPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
N+ T + PTI +P LWTGKQV+ST+++N+TP+ HG L+G K
Sbjct: 669 NSHTVTDKILLMEPTILRPQKLWTGKQVISTIMMNITPER----LHGLNLTG---KSSTR 721
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
++G + V R GELL GILDK Q G + GLVH+V + +G A LL L
Sbjct: 722 GDRWG--EGSEEGQVIFRDGELLCGILDKAQLGPSPRGLVHSVHEIYGHVVAGKLLGVLG 779
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL---PLDTDPE 244
+L T +L FT G+ D+ + ++ + R + + +A +G + A + L ++ +
Sbjct: 780 RLLTKFLHMRAFTCGMDDLRLTKKGNEARKRKLEEAEDIGRKIALKYVTLDQTKVEDEEA 839
Query: 245 IISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESG 304
+ +L++A + +A +D + S K+++ I CLP GL +PFP N +Q M SG
Sbjct: 840 ELKRRLEDALRDDAK-QAGLDAVFNSQTGKLSSEITSACLPTGLEKPFPWNQMQAMTSSG 898
Query: 305 AKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQP 364
AKGS VN ISC LGQ LEG+R +M+SG+TLPSF P+E S AGGF+ GRF+TGI+P
Sbjct: 899 AKGSVVNANLISCNLGQQVLEGRRVPVMISGKTLPSFRPFETSLMAGGFISGRFLTGIKP 958
Query: 365 QEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDS-DLSLIQVLYG 423
QE++FH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL YD TVR++ D S++Q LYG
Sbjct: 959 QEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKAEYDNTVRETADGSVMQFLYG 1018
Query: 424 EDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNF 483
EDGL++TK+ +L D F+FL N + V+ L L+
Sbjct: 1019 EDGLEITKQNHLQD--FTFLAQNF-----WSVVEELNGSDELN----------------- 1054
Query: 484 IFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKA-CPQPLISTFQPDAHFGSISENLADS 542
K D +W Q A KK RK K C P +S F P + +GS SE+ A +
Sbjct: 1055 -------KVKDDKAGEWNQ---NAIKKLRKTGKLDCVDPALSLFPPGSCYGSTSESFAMA 1104
Query: 543 VVKYT----------KGRTDASHVDK-FYDMIFYKNLLSLANPGENVGVLAAQSIGEPST 591
+ KY KG+T++ K F ++ K + S+ PGE+VG++A QSIGEPST
Sbjct: 1105 LRKYQKENPDKLLKEKGKTESRISKKDFTRVMNMKYMRSVVEPGESVGIVAGQSIGEPST 1164
Query: 592 QMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAK 651
QMTLNTFH AG NVTLGIPRLREI+M A+ I TP+M + EK AK
Sbjct: 1165 QMTLNTFHLAGHSAKNVTLGIPRLREIVMTASDKILTPTMTGVLNKQL--TEKDGRVFAK 1222
Query: 652 SMTRITMADVLEKVKIKEWLE--ISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFE 709
+++++T+A+V++ +++ E + S Y ++ F P Y ++ +++ I+ +
Sbjct: 1223 AISKLTLAEVVDTLRVHERISSGSSRGKAKIYDIEIDFFPPEEYTEEYAIQIEDILKTLQ 1282
Query: 710 RKFLKEL----EVAIAKR----------AAQ---GLKNMNIEQSRDQMEDDVE------- 745
KF+ L + KR +AQ G IE+S + +
Sbjct: 1283 HKFVPRLVKLTRAELKKRIDEKSLSTFSSAQPDIGTSAGVIEESTRRFGREARDGDDDDN 1342
Query: 746 ----DDEGEGAEGAGAALGRVDVSSDEERDE-EDAVQSHKKVNQEEDNDFEEPE------ 794
+++ + A+ A A + R + S E+ DE E+A+ + + + +D EE E
Sbjct: 1343 DDDEEEDQDDAKRAMANMNRSNQVSYEDPDEGEEAIIREQDSEEPDSDDNEEAEGNRHGD 1402
Query: 795 ----DEERMSEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC 850
++ M + + D ++ I + + E ++ +H + K+ ++ K C
Sbjct: 1403 GTATEDVDMPDADADSDSEKIQKSKESE---------DTIIGKHAEITKFKFNLKKGKSC 1453
Query: 851 -----------KLLFLPSNLFE-----------------------EKESKHLLKTDGINV 876
KLL LP L E +KE H++ TDG+N+
Sbjct: 1454 HLQLRYDISTPKLLLLP--LVEDAVRTSVIQFVKGLGTCTYIEADDKEPAHIV-TDGVNL 1510
Query: 877 NFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVA 936
+ Y+ + + LY N I M YG+EAA IIRE+ VF + I VD RHL+L+
Sbjct: 1511 LAMRDYQDYVYPHSLYTNSIADMLLMYGVEAARASIIREMAAVFDSHSISVDNRHLNLIG 1570
Query: 937 DYMTHSGTYVAMNRNG-IRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQ 995
D MTH+G + A NR G ++ + S KM+FE + +R A ++ D+L +PS+R+++G+
Sbjct: 1571 DVMTHAGGFRAFNRMGLVKDSTSPFMKMSFETTVGFLRDAVLERDWDNLDSPSSRIVMGR 1630
Query: 996 ECRQGTGLFQL 1006
GTG F +
Sbjct: 1631 VGTIGTGAFDV 1641
>gi|327351177|gb|EGE80034.1| DNA-directed RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
Length = 1699
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 380/1089 (34%), Positives = 572/1089 (52%), Gaps = 151/1089 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA L + QYL G PL GLIQDH+ G + RDTF + +Y L+Y L
Sbjct: 662 RAEAMQLADTDHQYLSATAGKPLRGLIQDHISMGTWFTSRDTFFDKDDYYQLLYSCLRPE 721
Query: 73 NTEIRT-----LPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
N+ T + PTI +P LWTGKQV+ST+++N+TP+ HG L+G K
Sbjct: 722 NSHTVTDKILLMEPTILRPQKLWTGKQVISTIMMNITPER----LHGLNLTG---KSSTR 774
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
++G + V R GELL GILDK Q G + GLVH+V + +G A LL L
Sbjct: 775 GDRWG--EGSEEGQVIFRDGELLCGILDKAQLGPSPRGLVHSVHEIYGHVVAGKLLGVLG 832
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL---PLDTDPE 244
+L T +L FT G+ D+ + ++ + R + + +A +G + A + L ++ +
Sbjct: 833 RLLTKFLHMRAFTCGMDDLRLTKKGNEARKRKLEEAEDIGRKIALKYVTLDQTKVEDEEA 892
Query: 245 IISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESG 304
+ +L++A + +A +D + S K+++ I CLP GL +PFP N +Q M SG
Sbjct: 893 ELKRRLEDALRDDAK-QAGLDAVFNSQTGKLSSEITSACLPTGLEKPFPWNQMQAMTSSG 951
Query: 305 AKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQP 364
AKGS VN ISC LGQ LEG+R +M+SG+TLPSF P+E S AGGF+ GRF+TGI+P
Sbjct: 952 AKGSVVNANLISCNLGQQVLEGRRVPVMISGKTLPSFRPFETSLMAGGFISGRFLTGIKP 1011
Query: 365 QEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDS-DLSLIQVLYG 423
QE++FH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL YD TVR++ D S++Q LYG
Sbjct: 1012 QEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKAEYDNTVRETADGSVMQFLYG 1071
Query: 424 EDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNF 483
EDGL++TK+ +L D F+FL N + V+ L L+
Sbjct: 1072 EDGLEITKQNHLQD--FTFLAQNF-----WSVVEELNGSDELN----------------- 1107
Query: 484 IFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKA-CPQPLISTFQPDAHFGSISENLADS 542
K D +W Q A KK RK K C P +S F P + +GS SE+ A +
Sbjct: 1108 -------KVKDDKAGEWNQ---NAIKKLRKTGKLDCVDPALSLFPPGSCYGSTSESFAMA 1157
Query: 543 VVKYT----------KGRTDASHVDK-FYDMIFYKNLLSLANPGENVGVLAAQSIGEPST 591
+ KY KG+T++ K F ++ K + S+ PGE+VG++A QSIGEPST
Sbjct: 1158 LRKYQKENPDKLLKEKGKTESRISKKDFTRVMNMKYMRSVVEPGESVGIVAGQSIGEPST 1217
Query: 592 QMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAK 651
QMTLNTFH AG NVTLGIPRLREI+M A+ I TP+M + EK AK
Sbjct: 1218 QMTLNTFHLAGHSAKNVTLGIPRLREIVMTASDKILTPTMTGVLNKQL--TEKDGRVFAK 1275
Query: 652 SMTRITMADVLEKVKIKEWLE--ISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFE 709
+++++T+A+V++ +++ E + S Y ++ F P Y ++ +++ I+ +
Sbjct: 1276 AISKLTLAEVVDTLRVHERISSGSSRGKAKIYDIEIDFFPPEEYTEEYAIQIEDILKTLQ 1335
Query: 710 RKFLKEL----EVAIAKR----------AAQ---GLKNMNIEQSRDQMEDDVE------- 745
KF+ L + KR +AQ G IE+S + +
Sbjct: 1336 HKFVPRLVKLTRAELKKRIDEKSLSTFSSAQPDIGTSAGVIEESTRRFGREARDGDDDDN 1395
Query: 746 ----DDEGEGAEGAGAALGRVDVSSDEERDE-EDAVQSHKKVNQEEDNDFEEPE------ 794
+++ + A+ A A + R + S E+ DE E+A+ + + + +D EE E
Sbjct: 1396 DDDEEEDQDDAKRAMANMNRSNQVSYEDPDEGEEAIIREQDSEEPDSDDNEEAEGNRHGD 1455
Query: 795 ----DEERMSEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC 850
++ M + + D ++ I + + E ++ +H + K+ ++ K C
Sbjct: 1456 GTATEDVDMPDADADSDSEKIQKSKESE---------DTIIGKHAEITKFKFNLKKGKSC 1506
Query: 851 -----------KLLFLP-------SNLFE--------------EKESKHLLKTDGINVNF 878
KLL LP +++ + +KE H++ TDG+N+
Sbjct: 1507 HLQLRYDISTPKLLLLPLVEDAVRTSVIQFVKGLGTCTYIEADDKEPAHIV-TDGVNLLA 1565
Query: 879 ISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADY 938
+ Y+ + + LY N I M YG+EAA IIRE+ VF + I VD RHL+L+ D
Sbjct: 1566 MRDYQDYVYPHSLYTNSIADMLLMYGVEAARASIIREMAAVFDSHSISVDNRHLNLIGDV 1625
Query: 939 MTHSGTYVAMNRNG-IRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQEC 997
MTH+G + A NR G ++ + S KM+FE + +R A ++ D+L +PS+R+++G+
Sbjct: 1626 MTHAGGFRAFNRMGLVKDSTSPFMKMSFETTVGFLRDAVLERDWDNLDSPSSRIVMGRVG 1685
Query: 998 RQGTGLFQL 1006
GTG F +
Sbjct: 1686 TIGTGAFDV 1694
>gi|402078175|gb|EJT73524.1| DNA-directed RNA polymerase I subunit RPA1 [Gaeumannomyces graminis
var. tritici R3-111a-1]
Length = 1726
Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust.
Identities = 383/1079 (35%), Positives = 551/1079 (51%), Gaps = 114/1079 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL--- 69
+ EA L + QY+ G PL GLIQDH+ L +DTFL R Y LVY AL
Sbjct: 662 RTEALQLADTDHQYISGTAGKPLRGLIQDHLSVSVALCNKDTFLDRGAYHELVYNALRPE 721
Query: 70 --CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL-LSGILDKKQF 126
IL I +PP I KP P WTGKQV++TV+ N+ P D G+L ++G K
Sbjct: 722 SGHILRERIELVPPAIIKPFPRWTGKQVITTVLRNIKPLD-----CGDLWMNG---KSSV 773
Query: 127 GSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCL 186
+ +G VH V + HV R GE +SGILDK Q G + GL+H+V + +G A LLS L
Sbjct: 774 AANLWG-VH-VEEGHVMFRDGEFISGILDKAQLGPSSGGLIHSVHEVYGPAIAGKLLSSL 831
Query: 187 AKLFTVYLQRVGFTLGVRDI--LVRQERDRKRTKIINKARRLGTEAACNALGL----PLD 240
+L T YL FT G+ D+ + E DRKR I A +G E A + L P
Sbjct: 832 GRLLTRYLNMRAFTCGMDDLKLTAQGEADRKRI-IETGAHTVGLEVAAKYVSLDKQAPGS 890
Query: 241 TDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFM 300
TDPE++ +L+E + + +D S ++ I + CLP GL + FP N +Q M
Sbjct: 891 TDPELLR-RLEEVMRDDSK-QEGLDALMNSGSKDMSTAITKACLPAGLEKQFPKNQMQAM 948
Query: 301 VESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMT 360
SGAKG VN ISC LGQ LEG+R +MVSG++LP F P+E + RAGG++ RF+T
Sbjct: 949 TVSGAKGGQVNANLISCNLGQQVLEGRRVPLMVSGKSLPCFKPFETNIRAGGYIVNRFLT 1008
Query: 361 GIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQV 420
GI+PQE++FH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL V YD +VRDSD SL+Q
Sbjct: 1009 GIRPQEYYFHHMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLEVGYDNSVRDSDGSLVQF 1068
Query: 421 LYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLL--KKHPLSLALLLLLTFKSS 478
LYGEDGLDV K++YLTD F+F+ N+K S LN+ + PL ++ S
Sbjct: 1069 LYGEDGLDVAKQKYLTD--FTFVLQNLK---SEVAQLNIADPRTEPLFDQRDEIMKQNRS 1123
Query: 479 ----GKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGS 534
K N +F+ ++ + +K K K P L+ + D +
Sbjct: 1124 NVKRAKANPMFAEDPVNAILNPALHAFATSEKFFDKMSSYLKDNPDGLVK--EKDKEKNA 1181
Query: 535 ISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMT 594
++L+ + GR A V + K + SL +PGE VG++A QS+GEPSTQMT
Sbjct: 1182 QRQDLSLPSSRARLGRKLAEKV------LSAKYMRSLVHPGEAVGIVAGQSVGEPSTQMT 1235
Query: 595 LNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMT 654
LNTFH AG NVTLGIPRLRE+LM A+ I TP+M + ++ + AKS++
Sbjct: 1236 LNTFHLAGHSAKNVTLGIPRLREVLMTASTKISTPAMTLILNEELS--HSDGEKFAKSIS 1293
Query: 655 RITMADVLEKVKIKEWL--EISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKF 712
+ +A V++KV + E + I+ Y ++ F P+ Y + + ++D E KF
Sbjct: 1294 ILPLAHVMDKVTVFERVGAGIAHPLAKLYDIRLRFFPSTEYTKTYDIGITDVLDTVEAKF 1353
Query: 713 L----KELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEG-------------- 754
+ K ++ + K+++ + + + + EG
Sbjct: 1354 VGILSKLVQKEVKKKSSDVSSATPVVGEKSGVIEMATAGPSEGGRAGEDDDDESEDDDGD 1413
Query: 755 AGAALGRVD----VSSDEERDEEDAVQSHKKVNQEEDND---FEEPEDEERMSEREEDDN 807
A AA R + VS DE+DA+Q+ + + E D++ P +M DD
Sbjct: 1414 ATAAKQRANRSEAVSYGPNDDEDDAIQNEMQQDTEFDDEGFGGSPPPRPPKMKIPGADDE 1473
Query: 808 TSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLF-----LPS----N 858
+G + S N + + ++H V ++ D+ + WC++ +P +
Sbjct: 1474 LERLGGDDAMVAAASKN-RERRIRDKHPEVTRFRCDETSGEWCEMTLEFSASIPKILMLS 1532
Query: 859 LFEEKESKHL-------------------------------LKTDGINVNFISQYRHLLD 887
L +E K L + T G NV + QY ++
Sbjct: 1533 LVQEAVRKALVHQIAGIMNCTFVSNAEVTDPRTGEEKRMAVVHTAGSNVRAMQQYAEYIN 1592
Query: 888 LNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVA 947
N++ NDI + YG+EA II+E++ VF + I VD RHL+L+ D+MT SG +
Sbjct: 1593 PNRISTNDIAAVLEIYGVEACRNSIIQELRAVFESHAIAVDNRHLNLIGDHMTKSGGFTP 1652
Query: 948 MNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
NR G+R N S KM+FE L ++ A + G D L PS+R++LG+ GTG F +
Sbjct: 1653 FNRMGLRGNVSPFTKMSFETTLAFLKDAVLDGDWDDLSTPSSRIVLGRLGHVGTGAFDV 1711
>gi|322705032|gb|EFY96621.1| DNA-directed RNA polymerase I subunit RPA1 [Metarhizium anisopliae
ARSEF 23]
Length = 1659
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 376/1069 (35%), Positives = 544/1069 (50%), Gaps = 122/1069 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL--- 69
+AEA + + QYL G PL GLIQDH+ L RDTF +R +Y +LVY A+
Sbjct: 629 RAEALHIADTDHQYLSGTQGKPLRGLIQDHISISIALCTRDTFFSRGDYHSLVYSAIRPE 688
Query: 70 --CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
I I+ +PP I KP+P WTGKQV+ST++ N P I +G L + + Q
Sbjct: 689 SGHIFGERIQLVPPAIIKPVPRWTGKQVISTILKNTQP-----INYGAL--NLRGESQIK 741
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
+ Q+G + V I+ GE ++GILDK Q G + GL+HA+ + HG A LLS
Sbjct: 742 AEQWGTNSE--EGTVLIQDGEFVTGILDKSQIGQSSGGLIHAIHEIHGPAIAGKLLSAFG 799
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLP--LDTDPEI 245
+L T YL F+ GV D+ + + + R + + R+G E A N + L D+ +
Sbjct: 800 RLLTRYLNMRAFSCGVDDLKLTAKGEEARRQELQAINRVGLEVASNYVSLKDVSDSQNPV 859
Query: 246 ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGA 305
+ +L+E + +D +T+ + +VC+P GL +PFP N +Q M SGA
Sbjct: 860 LLERLEEVLRDDTKLEG-LDLLMNHTTKDITDKVQKVCIPNGLEKPFPRNQMQAMTTSGA 918
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS VN ISC LGQ LE +R +MVSG++LP F P+E + A G++ RF+TGI+PQ
Sbjct: 919 KGSRVNASLISCNLGQQVLESRRVPIMVSGKSLPCFKPFETNITANGYIGSRFLTGIRPQ 978
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
E++FH MAGREGLIDTAVKTSRSGYLQRC++K LEGL V YD TVRD+D S+IQ LYGED
Sbjct: 979 EYYFHHMAGREGLIDTAVKTSRSGYLQRCVIKGLEGLMVGYDTTVRDADGSIIQFLYGED 1038
Query: 426 GLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIF 485
GLDVTK+ YL D F F+ N+ + L+ P + L G +F
Sbjct: 1039 GLDVTKQTYLKD--FGFILRNLTSEVAQ------LRYDPQVVKRL--------GADRELF 1082
Query: 486 SPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVK 545
TK+ ++ D K R PLIS F P + +SE +++
Sbjct: 1083 ----TKYMKSAVKHSKPGDPKGR-----------DPLISAFNPATNAFVLSEAFYNAMSS 1127
Query: 546 YTKGRTDA--------SHVD-------KFYDMIF-YKNLLSLANPGENVGVLAAQSIGEP 589
Y K D S D K +++F K L SL PGE VG++A QS+GEP
Sbjct: 1128 YLKANADGLIREKRDKSAPDSSNALNKKNAEVLFAMKYLQSLVEPGEAVGIVAGQSVGEP 1187
Query: 590 STQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRL 649
STQMTLNTFH AG NVT GIPRLREILM A+K I TP+M + + K E +A
Sbjct: 1188 STQMTLNTFHLAGHAAKNVTAGIPRLREILMTASKDISTPAMSLYPRDSLSKQEAEA--F 1245
Query: 650 AKSMTRITMADVLEKVKIKEWL---EISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIID 706
S++ + ++ +L+ V ++E + +I P + Y +K F P Y + S ++D
Sbjct: 1246 TNSISALPLSHILDSVVVEEKVGRGKIYPSAKI-YHIKLKFFPPQEYFEMHHASISDVLD 1304
Query: 707 HFERKFLKEL------------------------EVAIAKRAAQGLKNMNIEQSRDQMED 742
E K L L +V + + AA + + + D D
Sbjct: 1305 AVEWKLLHHLIKLSKAELKKRALDATAATPDIGAKVGVVETAAASAETVGDDDDGDDAGD 1364
Query: 743 DVEDDEGEGAEGAGA-ALGRVDVSSDE--ERDEEDAVQSHKKVNQEEDNDFEE--PEDEE 797
D E A A + G D + DE + +EDA +V + N +E EDE+
Sbjct: 1365 DDFTSAKERANRLEAVSYGPNDDADDEIQQAMDEDAAADGLEVESLDGNPQKETTSEDED 1424
Query: 798 RMSEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQH-----------------NIVHKY 840
+ER+ D+ +R F + T + V NIV +
Sbjct: 1425 ESAERKVADSAKPRAQRVMSTFPEVTGFEYDEAVGDGCNVTIEFDAKVPKFLMLNIVQRA 1484
Query: 841 SYDKKNHMWCKLLFLPSNLFEEKES---KHLLKTDGINVNFISQYRHLLDLNKLYVNDIH 897
K M ++ + + +E+ + ++ G N+ I +Y +D +++ NDI
Sbjct: 1485 I---KKTMVREIRGIGACRLDEEGGGGKERVIHVTGANIGAIQKYSDEIDPDRIQTNDIV 1541
Query: 898 YMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNP 957
+ S YG+EA I+RE+ VF +GI+VD RHL+L+ADYMT +G + A +R G++ N
Sbjct: 1542 AVLSMYGVEACRSNIVRELAGVFGSHGIKVDNRHLNLIADYMTRNGDFTAFSRLGLQGNV 1601
Query: 958 SFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
S KM+FE L ++ A + G D L PS R+++G+ + GTG F +
Sbjct: 1602 SPFTKMSFETTLAFLKDAVLDGDWDELATPSGRLVMGRLGKLGTGSFDV 1650
>gi|224002505|ref|XP_002290924.1| DNA directed RNA polymerase i, alpha subunit [Thalassiosira
pseudonana CCMP1335]
gi|220972700|gb|EED91031.1| DNA directed RNA polymerase i, alpha subunit [Thalassiosira
pseudonana CCMP1335]
Length = 1671
Score = 544 bits (1401), Expect = e-151, Method: Compositional matrix adjust.
Identities = 374/1071 (34%), Positives = 571/1071 (53%), Gaps = 106/1071 (9%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S+ AE+ F+ Q++VP DGSPL GLIQDHV +G KL+ +TF+ R Y L++ A
Sbjct: 628 SYLAAAESQFIAGTDLQFIVPTDGSPLRGLIQDHVDAGVKLTCMNTFIEREVYQQLLFAA 687
Query: 69 LCIL--------NTEIRTLPPTIWKPMPLWTGKQVLSTVIINL---TPKDKVIIRHGELL 117
L L + I LPP I KP LWTGKQV+ST++ +L +D+ + L
Sbjct: 688 LGSLPGLELIRSDANIELLPPAIRKPKELWTGKQVISTLLNHLRKGNDRDEDPSFNFPGL 747
Query: 118 SGILDKKQFGSTQYGLVHAVWDTH-VTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGA 176
S + K + +T +G A W+ H V +R G+L+ GILDK FG++++ LVHAV++ +G
Sbjct: 748 S-MERKAKTPATAFG---ASWNEHMVIVRDGDLVQGILDKAAFGASEFSLVHAVYEAYGP 803
Query: 177 EHAISLLSCLAKLFTVYLQR-VGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNAL 235
A LL+ L +LFT Y+Q G + + D+++ + D KR +++ G
Sbjct: 804 SRAGLLLNALGRLFTAYIQYYTGHSCRMEDLILTPDADEKRRQLVKVESDGGKVEIPPVA 863
Query: 236 GLPLDTDP------EIISSQLQE--AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEG 287
P P ++S++ E + + A +D +S ++ + ++I ++CLP+G
Sbjct: 864 QNPKSKQPLKPHEKATVASKIGELLSGGDGKENAAALDGFMQSQVNPLASDIIKICLPDG 923
Query: 288 LIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVS 347
L PFP N M +GAKGS VN Q+SC LGQ LEG+R M SGRTLPSF PY+ +
Sbjct: 924 LAVPFPENTFGLMTTTGAKGSMVNQSQVSCSLGQQALEGRRVPRMSSGRTLPSFAPYDPN 983
Query: 348 PRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYD 407
PRA GF+ RF+TG++PQE++FHCMAGREGL+DTAVKTSRSGYLQRCL+KHLE L V YD
Sbjct: 984 PRADGFITDRFLTGVRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKHLEELKVSYD 1043
Query: 408 MTVRDSDLSLIQVLYGEDGLDVTKRQYL--TDKQFSFLEDNIKWICSYKVILNLLKKHPL 465
TVRD + ++Q +YGEDG+D TK +L + F FL N + +L K++P
Sbjct: 1044 HTVRDGEGGVVQFVYGEDGIDPTKAAHLDCESRTFQFLARNHE---------SLKKRYPA 1094
Query: 466 SLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQ---LDDKARKKYRKKFKACPQPL 522
L + K S + +P + F ++++ + D AR+ + +
Sbjct: 1095 LPGSTLDIAVKDSRRAQET-TPAES-FHCEIIKPGVPDPIVSDTARENGAHRLGS----- 1147
Query: 523 ISTFQPDAHFGSISEN-LADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVL 581
S H +++ N + D+ VK + S + F ++ K +LA+PGE VG +
Sbjct: 1148 -SGACVSEHVANLASNAMKDTGVKKALENSGLSK-EGFSALVAAKYSSALAHPGEAVGSI 1205
Query: 582 AAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPK 641
AAQSIGEPSTQMTLNTFH AG G NVTLGIPRLREI+M A+K +KTP+M IP +
Sbjct: 1206 AAQSIGEPSTQMTLNTFHLAGAG-ANVTLGIPRLREIIMTASKELKTPTMSIPLSESVS- 1263
Query: 642 LEKKANRLAKSMTRITMADVLEK---VKIKEWLEISPEPHMN--YQMKFCFIPAHMYRDK 696
+++A RL + +++++ D+L + ++E LE + Y + PA +
Sbjct: 1264 -DREALRLTRYFSKVSLMDLLASHGGITVREVLEKGAGSNWERCYYVTLKLHPAERINEA 1322
Query: 697 TSVKPSKIIDHFERKFLKELEVAIA---KRAAQGLKNMNIE----QSRDQMEDDVEDDEG 749
++ I + F+ +L + KR +IE S D ME DV G
Sbjct: 1323 FGLRLEDIAAVVTKTFIPKLARVMKAEMKRNETNEGYASIEVIGGASTDFMESDVSG--G 1380
Query: 750 EGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERM---------S 800
E ++ + + D DE ++ED V + +++E + + +D+++ S
Sbjct: 1381 ESSKSKASKRPKDDEYDDEVANDEDGVTGTRFGHRKEMTSYGDMDDDDKYIAKRSAKDDS 1440
Query: 801 EREEDDNTSNI---GERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPS 857
+ +ED+ + GE E ++ + ++++I+ + + C LL +
Sbjct: 1441 DEDEDNRLPAVITEGEESDDELESKSSNTARISRSKNSII--LDPLRVDPSTCPLLMV-- 1496
Query: 858 NLFE---------------------EKESKHLLKTDGINVNFI-SQYRHLLDLNKLYVND 895
L E E+ L+T G N + S ++D NKL ND
Sbjct: 1497 GLVERAAETTIVRARPKINEGFVNNEEGRGRCLQTAGCNFEEMWSLDEGVVDHNKLVSND 1556
Query: 896 IHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIR- 954
I + YG+EAA I +++ VFAVYGI VDPRHLSL+AD+MT+ G Y MNR G+
Sbjct: 1557 IWGIRCAYGVEAARMSIADQIRGVFAVYGISVDPRHLSLIADFMTYDGEYKPMNRIGMAD 1616
Query: 955 LNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQ 1005
++ +F+Q M+FE + A++ R D + +PSA +++G R GTG F+
Sbjct: 1617 ISSTFLQ-MSFESTSVFMVDAALHKRNDPMMSPSANIVMGHPIRHGTGAFE 1666
>gi|347831222|emb|CCD46919.1| similar to DNA-directed RNA polymerase I subunit [Botryotinia
fuckeliana]
Length = 1703
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 370/1091 (33%), Positives = 563/1091 (51%), Gaps = 143/1091 (13%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
+ +AEA + + QYL G PL GLIQDH+ + +DT+ RA Y L+Y
Sbjct: 647 TEVARAEALQIADTDHQYLSATAGKPLRGLIQDHISVSVWMCNKDTYFDRATYQQLIYNC 706
Query: 69 L-----CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDK 123
+ I+ I T+PP I KP+ WTGKQV++T++ N+TP + I L+G K
Sbjct: 707 IRPESGHIVGERIVTVPPAIIKPVARWTGKQVITTILKNITPLNCAPIS----LTG---K 759
Query: 124 KQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLL 183
Q + ++G + V GE ++GILDK Q G GL+H+V + +G A LL
Sbjct: 760 TQTPADRWGADSE--EGVVLFNGGEFITGILDKAQIGPAGGGLIHSVHEVYGPATAGKLL 817
Query: 184 SCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL----PL 239
S L +L T YL FT G+ D+ + E ++ R + ++ A ++G E A + L P
Sbjct: 818 SILGRLLTKYLHMRAFTCGMDDLRLTPEGEQTRIETLSDAGKIGLEVAAKYVSLEDQKPT 877
Query: 240 DTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQF 299
+TD E+++ +L++ + +A +D + K++ +I CLP+GL++ FP N +Q
Sbjct: 878 ETDQELLN-RLEDVMRDDSK-QAGLDALMNARAGKLSTSITNACLPQGLVKQFPHNQMQN 935
Query: 300 MVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFM 359
M SGAKGS VN ISC LGQ LEG+R +MVSG++LP F P++ RAGG++ RF+
Sbjct: 936 MTVSGAKGSAVNANLISCNLGQQVLEGRRVPLMVSGKSLPCFKPFDTHIRAGGYIVNRFL 995
Query: 360 TGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQ 419
TGI+PQE++FH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL V YD +VRDSD S+IQ
Sbjct: 996 TGIRPQEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKVEYDTSVRDSDGSMIQ 1055
Query: 420 VLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSG 479
+YGEDGLDVTK+++LTD F FL N+ ++ L L + G
Sbjct: 1056 FIYGEDGLDVTKQKHLTD--FKFLLQNL-------------------MSELAQLNY---G 1091
Query: 480 KPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENL 539
P R + + E + KA K + P P++S + P + + SE
Sbjct: 1092 DP-------RYETIFEEKEAIIKRMKKALKHAKANDLNGPDPVLSEYNPGKYGYATSEKY 1144
Query: 540 ADSVVKYTKGRTDASHVDK-----------FYDMIFYKNLLSLANPGENVGVLAAQSIGE 588
+++ Y K D DK ++ K L S+ PGE VG++A QS+GE
Sbjct: 1145 FETLTNYMKTNPDGLVKDKDHPNGVGPRKALEPVLVAKYLKSVVEPGEAVGIVAGQSVGE 1204
Query: 589 PSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANR 648
PSTQMTLNTFH AG NVTLGIPRLREI+M A+ I TPSM + ++ E +
Sbjct: 1205 PSTQMTLNTFHLAGHSSKNVTLGIPRLREIVMTASNHISTPSMTLTLNEELTPDE--CEK 1262
Query: 649 LAKSMTRITMADVLEKVKIKEWL--EISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIID 706
AKS++ +++A+VL+ +KE + ++ + Y + P+ Y + ++ ++
Sbjct: 1263 FAKSISILSLAEVLDWATVKERIGRGVAFQQAKIYDIHIKLFPSKEYCETYAIDIDDVLF 1322
Query: 707 HFERKFLKELE----VAIAKRAAQGLKNMN------IEQSRDQMEDDVEDDEGEGAEGAG 756
+R+F +L+ A+ ++ + N I +S +E+ D E E E
Sbjct: 1323 TLQRRFTSKLQHLTRKALGRKKVEKAGKANTAAVPEIGKSVGTIEEARPDAEREMGEDDE 1382
Query: 757 AALGRVDVSSDEER-------------DEEDAVQSHKKVNQEEDNDFEEPEDE------E 797
G D ++D+++ DE+DAVQ+ E D E+ EDE
Sbjct: 1383 DDDGDDDATNDKQKANRSEAVSYAANDDEDDAVQAQ----NAEPEDVEDMEDEGIGGSPR 1438
Query: 798 RMSEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC------- 850
+ED+ GER K + ++ V + + ++ +D+ N WC
Sbjct: 1439 AAQSDDEDEGDDENGERKKRKTTAASEELEAQVKKRCEDITRFRFDQDNAEWCDVSLEYD 1498
Query: 851 ----KLLFLPSNLFEE------------------------KESKH-------LLKTDGIN 875
K+L L ++ EE K+SK ++ T+G+N
Sbjct: 1499 ADVPKVLML--SIVEEALRSCLIQHIPGIGSCTYDGDNEVKDSKTGKMVKIPVVHTEGVN 1556
Query: 876 VNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLV 935
+ + Y ++ NK+ NDI M YG+EA I++E+ +VF + I VD RHL+L+
Sbjct: 1557 LKAMQNYAAFINPNKISTNDIAAMLENYGVEACRSTIVQELHSVFDGHAIAVDMRHLNLI 1616
Query: 936 ADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQ 995
ADYMT G + NRNG++ + S KM+FE + + A + D L PS+R+++G+
Sbjct: 1617 ADYMTRGGGFSPFNRNGMKGSVSPFMKMSFETTVGFLADAVAECDWDDLANPSSRIVIGR 1676
Query: 996 ECRQGTGLFQL 1006
+ GTG F +
Sbjct: 1677 MSKVGTGAFDV 1687
>gi|261200871|ref|XP_002626836.1| DNA-directed RNA polymerase I subunit [Ajellomyces dermatitidis
SLH14081]
gi|239593908|gb|EEQ76489.1| DNA-directed RNA polymerase I subunit [Ajellomyces dermatitidis
SLH14081]
Length = 1645
Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust.
Identities = 376/1079 (34%), Positives = 567/1079 (52%), Gaps = 132/1079 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA L + QYL G PL GLIQDH+ G + RDTF + +Y L+Y L
Sbjct: 609 RAEAMQLADTDHQYLSATAGKPLRGLIQDHISMGTWFTSRDTFFDKDDYYQLLYSCLRPE 668
Query: 73 NTEIRT-----LPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
N+ T + PTI +P LWTGKQV+ST+++N+TP+ HG L+G K
Sbjct: 669 NSHTVTDKILLMEPTILRPQKLWTGKQVISTIMMNITPER----LHGLNLTG---KSSTR 721
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
++G + V R GELL GILDK Q G + GLVH+V + +G A LL L
Sbjct: 722 GDRWG--EGSEEGQVIFRDGELLCGILDKAQLGPSPRGLVHSVHEIYGHVVAGKLLGVLG 779
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL---PLDTDPE 244
+L T +L FT G+ D+ + ++ + R + + +A +G + A + L ++ +
Sbjct: 780 RLLTKFLHMRAFTCGMDDLRLTKKGNEARKRKLEEAEDIGRKIALKYVTLDQTKVEDEEA 839
Query: 245 IISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESG 304
+ +L++A + +A +D + S K+++ I CLP GL +PFP N +Q M SG
Sbjct: 840 ELKRRLEDALRDDAK-QAGLDAVFNSQTGKLSSEITSACLPTGLEKPFPWNQMQAMTSSG 898
Query: 305 AKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQP 364
AKGS VN ISC LGQ LEG+R +M+SG+TLPSF P+E S AGGF+ GRF+TGI+P
Sbjct: 899 AKGSVVNANLISCNLGQQVLEGRRVPVMISGKTLPSFRPFETSLMAGGFISGRFLTGIKP 958
Query: 365 QEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDS-DLSLIQVLYG 423
QE++FH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL YD TVR++ D S++Q LYG
Sbjct: 959 QEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKAEYDNTVRETADGSVMQFLYG 1018
Query: 424 EDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNF 483
EDGL++ K+ +L D F+FL N + V+ L L+
Sbjct: 1019 EDGLEIIKQNHLQD--FTFLAQNF-----WSVVEELNGSDELN----------------- 1054
Query: 484 IFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKA-CPQPLISTFQPDAHFGSISENLADS 542
K D +W Q A KK RK K C P +S F P + +GS SE+ A +
Sbjct: 1055 -------KVKDDKAGEWNQ---NAIKKLRKTGKLDCVDPALSLFPPGSCYGSTSESFAMA 1104
Query: 543 VVKYTK----------GRTDASHVDK-FYDMIFYKNLLSLANPGENVGVLAAQSIGEPST 591
+ KY K G+T++ K F ++ K + S+ PGE+VG++A QSIGEPST
Sbjct: 1105 LRKYQKENPDKLLKEKGKTESRISKKDFTRVMNMKYMRSVVEPGESVGIVAGQSIGEPST 1164
Query: 592 QMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAK 651
QMTLNTFH AG NVTLGIPRLREI+M A+ I TP+M + EK AK
Sbjct: 1165 QMTLNTFHLAGHSAKNVTLGIPRLREIVMTASDKILTPTMTGVLNKQL--TEKDGRVFAK 1222
Query: 652 SMTRITMADVLEKVKIKEWLEI--SPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFE 709
+++++T+A+V++ +++ E + S Y ++ F P Y ++ +++ I+ +
Sbjct: 1223 AISKLTLAEVVDTLRVHERISSGSSRGKAKIYDIEIDFFPPDEYTEEYAIQIEDILKTLQ 1282
Query: 710 RKFLKEL----EVAIAKR----------AAQ---GLKNMNIEQS-----RDQMEDDVEDD 747
KF+ L + KR +AQ G IE+S R+ + D ++D
Sbjct: 1283 HKFVPRLVKLTRAELKKRIDEKSLSTFSSAQPDIGTSAGVIEESTRRFGREARDGDDDND 1342
Query: 748 EGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDN 807
+ E + A +++ + ED + + + +E+D++ + +D E D
Sbjct: 1343 DDEEEDQDDAKRAMANMNRSNQVSYEDPDEGEEAIIREQDSEEPDSDDNEEAEGNRHGDG 1402
Query: 808 TSNIGERFKIEFRDSTNVFVKD-------VVNQHNIVHKYSYDKKNHMWC---------- 850
T+ DS + ++ ++ +H + K+ ++ K C
Sbjct: 1403 TATEDVDMPDADADSDSEKIQKSKESEDTIIGKHAEITKFKFNLKKGKSCHIQLRYDIST 1462
Query: 851 -KLLFLP-------SNLFE--------------EKESKHLLKTDGINVNFISQYRHLLDL 888
KLL LP +++ + +KE H++ TDG+N+ + Y+ +
Sbjct: 1463 PKLLLLPLVEDAVRTSVIQFVKGLGTCTYIEADDKEPAHIV-TDGVNLLAMRDYQDYVYP 1521
Query: 889 NKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAM 948
+ LY N I M YG+EAA IIRE+ VF + I VD RHL+L+ D MTH+G + A
Sbjct: 1522 HSLYTNSIADMLLMYGVEAARASIIREMAAVFDSHSISVDNRHLNLIGDVMTHAGGFRAF 1581
Query: 949 NRNG-IRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
NR G ++ + S KM+FE + +R A ++ D+L +PS+R+++G+ GTG F +
Sbjct: 1582 NRMGLVKDSTSPFMKMSFETTVGFLRDAVLERDWDNLDSPSSRIVMGRVGTIGTGAFDV 1640
>gi|302418908|ref|XP_003007285.1| DNA-directed RNA polymerase I subunit RPA1 [Verticillium albo-atrum
VaMs.102]
gi|261354887|gb|EEY17315.1| DNA-directed RNA polymerase I subunit RPA1 [Verticillium albo-atrum
VaMs.102]
Length = 1686
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 378/1111 (34%), Positives = 541/1111 (48%), Gaps = 166/1111 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL--- 69
+AEA + + QYL G PL GLIQDH+ L RD+F TR ++ LVY AL
Sbjct: 635 RAEALQIADTDHQYLSGTAGKPLRGLIQDHISVSVSLCSRDSFFTRGDFQQLVYAALRPE 694
Query: 70 --CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
IL + +PP I KP+P WTGKQV++T++ N+ P G +SG K Q
Sbjct: 695 SGHILGERLELVPPAIIKPVPRWTGKQVITTILKNIKPP----TGEGIWMSG---KTQTP 747
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
+ ++G + V + G L GILDK G + GL+H+V + +G A LLS L
Sbjct: 748 ADRWG--KGSEEGIVLFQDGHFLHGILDKAHLGPSSGGLIHSVHEVYGPAIAGKLLSSLG 805
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL----PLDTDP 243
+L T Y FT G+ D+ + E ++ R + + +A +G + A + L P TD
Sbjct: 806 RLLTRYSNMRAFTCGMDDLRLTPEGEQTRRETLREASDIGLQVATKYVSLGDSNPTSTDA 865
Query: 244 EIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVES 303
E++ +L+E + + +D +++ I + CLP GL++ FP N +Q M S
Sbjct: 866 ELLV-RLEEVMRDDNK-QEGLDMLMNQRSGELSQAITKACLPSGLVKQFPKNQMQAMTVS 923
Query: 304 GAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQ 363
GAKG VN ISC LGQ LEG+R +MVSG++LP F P++ S RAGG++ RF+TGI+
Sbjct: 924 GAKGGPVNANLISCNLGQQVLEGRRVPLMVSGKSLPCFKPFDSSVRAGGYIVQRFLTGIR 983
Query: 364 PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYG 423
PQE++FH MAGREGLIDTAVKTSRSGYLQRC++K +EGLTV YD TVRD+D +LIQ LYG
Sbjct: 984 PQEYYFHHMAGREGLIDTAVKTSRSGYLQRCIIKGMEGLTVSYDSTVRDADGTLIQFLYG 1043
Query: 424 EDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNF 483
EDGLD TK++YLTD F F+ NI+ +
Sbjct: 1044 EDGLDPTKQKYLTD--FGFILRNIESESA------------------------------- 1070
Query: 484 IFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFK-------ACPQPLISTFQPDAHFGSIS 536
+ F+ D E D K + K P+IS P + S
Sbjct: 1071 -----QLGFSSDFRETLAGNKDSILKHMKSAIKHAKAGKVGGKDPVISMVNPARVAFATS 1125
Query: 537 ENLADSVVKYTKGRTDA----------------SHVDKFYDMIF-YKNLLSLANPGENVG 579
E +S+ +Y K D S K +++ K + SL GE VG
Sbjct: 1126 EKFYESMTEYIKENKDGLVREKGEKRPATSFIPSVSKKSAELVLAAKYMRSLVEAGEGVG 1185
Query: 580 VLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDM 639
++A QSIGEPSTQMTLNTFH AG NVTLGIPRLREILM A+K I TPSM + + ++
Sbjct: 1186 IVAGQSIGEPSTQMTLNTFHLAGHSAKNVTLGIPRLREILMTASKTISTPSMTLFPIAEL 1245
Query: 640 PKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEP--HMNYQMKFCFIPAHMYRDKT 697
E + KS++ + +A VL+ + E + H Y ++ F P+ Y
Sbjct: 1246 SAAECEV--FQKSISVLPLAHVLDMASVNERAGKGKDGSLHRLYDVRLEFFPSEEYTKAY 1303
Query: 698 SVKPSKIIDHFERKF----LKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAE 753
+++ + ++ E+KF LK + I K+ + S+ VE G GA
Sbjct: 1304 AIEAADVLAAVEKKFLGHLLKMMLKEIRKKTMMSSAATPVVGSK---AGAVEMVTGSGAR 1360
Query: 754 -----------------GAGAALGRVD----VSSDEERDEEDAVQSH--KKVNQEEDNDF 790
A A R + VS D++DAVQ+ ++ + +ED F
Sbjct: 1361 PAPPDEDEDEDEGEDEDDATNAKQRANRSEAVSYGPNDDDDDAVQNQMDREASPDEDEGF 1420
Query: 791 ---EEPEDEERMSEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNH 847
P +R S +DDN E D + V +H V ++ D+ +
Sbjct: 1421 GGSPPPAGAKRSSGNNDDDNNGQSSE-------DEETGRAERVKERHAHVTRFRSDEVSG 1473
Query: 848 MWC-----------KLLFLP--------------------SNLFEEKESK---------H 867
WC KLL L + +F+ K +
Sbjct: 1474 KWCEFTLEFDANTPKLLLLDIVQAAVKKTVVQELPGVGACTLVFDHKVTDPETGKEKDVP 1533
Query: 868 LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 927
+ T G N+ + +Y ++ NK NDI + YG+EA I+ E+ NVF +GI V
Sbjct: 1534 AIHTSGANLRIMQKYSDYINPNKTVTNDIAAVLDVYGVEACRSNIVLELGNVFGGHGISV 1593
Query: 928 DPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAP 987
D RHL+L+ADYMT +G Y NRNG+R N S KM+FE L ++ A + G D L P
Sbjct: 1594 DNRHLNLIADYMTRNGGYTPFNRNGLRGNVSPFTKMSFETTLAFLKDAVLDGDWDDLTTP 1653
Query: 988 SARVMLGQECRQGTGLFQLRNREKKKKKVEA 1018
S+R+++G+ + GTG F + + + V A
Sbjct: 1654 SSRLVMGRLGKTGTGAFDVLTKLPTRHSVSA 1684
>gi|452002907|gb|EMD95365.1| hypothetical protein COCHEDRAFT_1129734 [Cochliobolus heterostrophus
C5]
Length = 1779
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 364/1089 (33%), Positives = 552/1089 (50%), Gaps = 147/1089 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL--- 69
+AEA + + QYL G PL GLIQDH+ G LS +DTF TR +Y L+Y L
Sbjct: 658 RAEAMTIADTDHQYLSATAGKPLRGLIQDHISMGVWLSNKDTFFTRDQYHQLLYSCLRPE 717
Query: 70 --CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
+ + T+ P I KP P+WTGKQ+++TV+ N+ P E L K
Sbjct: 718 DGHTTSGRLETVVPAILKPQPMWTGKQIITTVLKNIKP--------AEYQDLTLSSK--- 766
Query: 128 STQYGLVHAVWDTH-----VTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISL 182
S+ G +W H V ++ G LL+GI+DK Q G GL++ +++ +G A
Sbjct: 767 SSTNG---KLWGAHSEEQFVIVKDGALLTGIMDKGQIGPAAGGLINGIYEAYGETIAGRA 823
Query: 183 LSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLD-- 240
LS + +L T L F+ GV D+++ + + R + KA ++G E A + L +
Sbjct: 824 LSIIGRLLTKMLHMRAFSCGVEDLILTGQGEEARLVELRKAEKIGFEVASKYVTLNAEKI 883
Query: 241 --TDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQ 298
T+PE+ + EA + +D + K+++ + LP+ LI+ FP N +Q
Sbjct: 884 DPTNPEL--RRRLEAVLRDDTKQHGLDLLTNTANSKISSAVTAAVLPDKLIKAFPKNQMQ 941
Query: 299 FMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRF 358
M SGAKGS VN QISC LGQ LEG+R +M+SG+TLP F P+E S RAGG++ RF
Sbjct: 942 AMTGSGAKGSMVNANQISCNLGQQVLEGRRVPVMISGKTLPCFKPFETSVRAGGYIVNRF 1001
Query: 359 MTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLI 418
+TG++PQE++FH MAGREGLIDTAVKTSRSGYLQRC++K +EGL V YD +VRDSD S++
Sbjct: 1002 LTGVRPQEYYFHMMAGREGLIDTAVKTSRSGYLQRCIIKGMEGLRVEYDTSVRDSDGSMV 1061
Query: 419 QVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSS 478
Q LYGEDGLD TK++YL D F F N + L+ + +P SS
Sbjct: 1062 QFLYGEDGLDTTKQKYLND--FKFQAQNFYSLAQ---TLHTAEAYPRV----------SS 1106
Query: 479 GKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISEN 538
+ + H K + + D A + + P H GS SE
Sbjct: 1107 AEA----AEHNKKAAKKAKKGDFTAMDPA---------------TAVYTPSRHSGSTSET 1147
Query: 539 LADSVVKYTKGRTDASHVDK------------FYDMIFYKNLLSLANPGENVGVLAAQSI 586
+ +Y D +K F M+ K L SL PGE VGV+A QSI
Sbjct: 1148 FLQAKREYCDKNPDKLLKNKKKDEEGEILKRTFEQMLDLKYLRSLVEPGEAVGVVAGQSI 1207
Query: 587 GEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKA 646
GEPSTQMTLNTFH AG NVTLGIPRLREI+M A+ I TPSM++ P++ K +
Sbjct: 1208 GEPSTQMTLNTFHLAGHSAKNVTLGIPRLREIVMTASAKISTPSMQLYPHPELSK--EDC 1265
Query: 647 NRLAKSMTRITMADVLEKVKIKEWLEISPEPHMN--YQMKFCFIPAHMYRDKTSVKPSKI 704
+ AKS+TR+ ++ VL+KV + E L + Y+++ F PA Y + ++K +
Sbjct: 1266 EKFAKSITRLPLSAVLDKVTVTETLGAGTQFSQARIYKIRLDFYPAKEYTKEYAIKVRDV 1325
Query: 705 IDHFERKFLKELE----VAIAKRAAQ--------------GLK-NMNIEQSRDQMEDDVE 745
+ E+KF L+ V + K+AA G K + E + ++ E+ ++
Sbjct: 1326 AESIEQKFCPRLQKMVCVDLKKKAANKSLSTASSASIPTVGEKTGRSDEATVEESEETLQ 1385
Query: 746 DDEGEGAEGAGAALGRVDVSSDEERD---EEDAV------QSHKKVNQEEDNDFEEPEDE 796
D GAE + G D + +D ED+V + + N D + E ED+
Sbjct: 1386 ADREGGAEDEESDDGEGDNDNTHAKDRGRREDSVAYEEPEEEEQAANARLDREDEISEDD 1445
Query: 797 ERMSEREEDDNTSN-------IGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMW 849
E + + E + +++++ + ++ + ++++D + +
Sbjct: 1446 ETYGGSPKPSRAATPDAESDDEDEEMTVPTDEASDIRRDRICTKNADIFEFTFDDRKGAF 1505
Query: 850 CKLLF-----------------------------LPSNLFEEKES---KHLLKTDGINVN 877
C++ F + + F + ++++ T+G N+
Sbjct: 1506 CEISFEFSASTAKLLMLHHVEDAANFSTIHVIPGITAAQFSAQSKDVPENVINTEGSNLI 1565
Query: 878 FISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVAD 937
+ +Y H++D+N+ NDI M YG+EAA I+RE+ VF+ +GI VD RHL+L+AD
Sbjct: 1566 AMREYAHIIDVNRTMTNDIVAMLHLYGVEAARATIVREMHAVFSGHGISVDQRHLNLIAD 1625
Query: 938 YMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQEC 997
MT G + NR G++ N S KM+FE + ++ A ++ D L+ PSAR+++G+
Sbjct: 1626 TMTKGGGFSPFNRIGMKGNVSPFMKMSFETTVGFLKDAVLEHDWDELKNPSARIVVGRLS 1685
Query: 998 RQGTGLFQL 1006
GTG F +
Sbjct: 1686 TVGTGAFDV 1694
>gi|358399047|gb|EHK48390.1| hypothetical protein TRIATDRAFT_236383 [Trichoderma atroviride IMI
206040]
Length = 1679
Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust.
Identities = 375/1087 (34%), Positives = 550/1087 (50%), Gaps = 153/1087 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL--- 69
+ EA + + QYL G PL GLIQDH+ L RDTF TR++Y LVY AL
Sbjct: 640 RVEALQIADTDHQYLSGTAGKPLRGLIQDHISVSVSLCNRDTFFTRSDYQQLVYSALRPE 699
Query: 70 --CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
IL ++ +PP + KP+P WTGKQV+ST++ N+ P + G L + + Q
Sbjct: 700 SGHILGERLQLVPPAVIKPVPRWTGKQVISTILANMRPPN-----CGGLT--MSENTQLK 752
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
+ Q+G + V I+ GE ++GILDK Q G + GL+HAV + +G A LLS L
Sbjct: 753 AEQWG--KNSEEGTVLIQDGEFITGILDKSQIGPSSSGLIHAVHEIYGPSVAGKLLSSLG 810
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDP--EI 245
+L T YL F+ G+ D+ + E + R + + A LG A N + L D +
Sbjct: 811 RLLTRYLGMRAFSCGMDDLRLTAEGEAARRRELVAADHLGLGIAANYVSLENQQDALNPL 870
Query: 246 ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGA 305
+ +L+E A + +D +T+ + + +P GL + FP N +Q M SGA
Sbjct: 871 LLERLEEV-ARDDSKQEGLDLLMNQGTKDITDAVQKALIPNGLEKSFPKNQMQAMTTSGA 929
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS VN ISC LGQ LEG+R +MVSG++LP F P+E + RAGG++ RF+TGI+PQ
Sbjct: 930 KGSRVNASLISCNLGQQVLEGRRVPLMVSGKSLPCFRPFETNIRAGGYIVNRFLTGIRPQ 989
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
E++FH MAGREGLIDTAVKTSRSGYLQRC++K +EGLTV YD +VRD+D SLIQ LYGED
Sbjct: 990 EYYFHHMAGREGLIDTAVKTSRSGYLQRCIIKGMEGLTVSYDTSVRDADGSLIQFLYGED 1049
Query: 426 GLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIF 485
GLD+TK+ YL D F F+ N+ + LK P K
Sbjct: 1050 GLDITKQNYLKD--FKFILQNVTSEAAQ------LKYDP---------------KVGERL 1086
Query: 486 SPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVK 545
+R F Q Y + A K + K PL ++F P + + SE +++ +
Sbjct: 1087 GANRQAF------QKYMKN--AVKHAKAKDPNGKDPLTASFDPATNAFATSETFYEAMTE 1138
Query: 546 YTKGRTDA------------------SHVDKFYDMIF-YKNLLSLANPGENVGVLAAQSI 586
Y K D + K +M+F K L SL PGE VG++A QSI
Sbjct: 1139 YLKENPDGLVREKKSQDKAVSNPNQVTLNKKNAEMLFAMKYLRSLVEPGEAVGIVAGQSI 1198
Query: 587 GEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKA 646
GEPSTQMTLNTFH AG NVTLGIPRLREILM A+K I TP+M + + ++ E+
Sbjct: 1199 GEPSTQMTLNTFHLAGHSAKNVTLGIPRLREILMTASKTISTPAMTLYPIAELS--EQDI 1256
Query: 647 NRLAKSMTRITMADVLEKVKIKEWLEISPEPHMN--YQMKFCFIPAHMYRDKTSVKPSKI 704
+KS++ + ++ VL+ V ++E + + Y++ F PA Y +V S I
Sbjct: 1257 EVFSKSISVLRLSQVLDGVVVEEMVGKGKLRGLAKIYKINLKFFPASEYSATYAVSVSDI 1316
Query: 705 IDHFERKFLKELEVAIAKRAAQ-------------GLKNMNIEQSRDQ------------ 739
+ E+K L+ + +AI KR + G+K +E +R +
Sbjct: 1317 MTTVEKKLLRNI-LAIMKREVKKRQTQTTTGTPEIGVKVGTVETARAEGAPDGAAGEDDD 1375
Query: 740 ------------------------------MEDDVEDDEGEGA------EGAGAALGRVD 763
+D ++ D GA EGA A G
Sbjct: 1376 DDDDDDDNDAAGAKRRANRGQAVSYGPNDDDDDAIQKDMSRGAEDDSDDEGADTAAGSNG 1435
Query: 764 VS---SDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNTSNIGERFKIEFR 820
V DE+ DE+ + S + + ++ E D + +R E N+ F++
Sbjct: 1436 VDKELGDEDGDEDGTMWSSRARKERVLKNYVEATDFQCDDKRGE---WCNVTLEFEVNIP 1492
Query: 821 DSTNV-FVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNLFEEKESKHLLKTDGINVNFI 879
+ V+D V Q +V + + + S L +++ + T G+N+ +
Sbjct: 1493 KVLMLNIVEDAVRQ-TVVQQVA------------GIESCLVAQEKGATAINTTGVNLRAM 1539
Query: 880 SQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYM 939
+Y +D +++ NDI + YG+EA I++E+ VF +GI+VD RHL+L+AD+M
Sbjct: 1540 HRYSDFIDPHRIQTNDIAAVLEVYGVEACRSNIVQELSGVFGGHGIKVDNRHLNLIADHM 1599
Query: 940 THSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQ 999
T +G + A +R G+R N S KM+FE L ++ A M G D L PS+R+++G+ R
Sbjct: 1600 TRNGDFTAFSRMGLRGNVSPFTKMSFETTLGFLKDALMDGDWDDLTTPSSRLVMGKLGRV 1659
Query: 1000 GTGLFQL 1006
GTG F +
Sbjct: 1660 GTGGFDV 1666
>gi|342887287|gb|EGU86828.1| hypothetical protein FOXB_02655 [Fusarium oxysporum Fo5176]
Length = 1676
Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust.
Identities = 367/1070 (34%), Positives = 548/1070 (51%), Gaps = 128/1070 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL--- 69
+AEA + + QYL G PL GLIQDH+ L RDTF T+ +Y LVY AL
Sbjct: 646 RAEALQIADTDHQYLSGTAGKPLRGLIQDHISVSVALCNRDTFFTKGDYQQLVYNALRPE 705
Query: 70 --CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKK--- 124
I+ I + P + +P+ WTGKQV++T++ N+ P + G L K
Sbjct: 706 SGHIVGERIELVAPAVIRPVARWTGKQVITTILKNMQPPN----------CGGLSMKAET 755
Query: 125 QFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLS 184
Q ++Q+G+ + V + GE ++GILDK Q G + G++HAV + +G A LLS
Sbjct: 756 QIKASQWGVNSE--EGTVVFQDGEFITGILDKSQIGPSSGGVIHAVHEIYGPAVAGKLLS 813
Query: 185 CLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPE 244
L +L T YL F+ G+ D+ + E ++ R + + A +G + A + + L D P
Sbjct: 814 SLGRLLTRYLNMRAFSCGMDDLRLTPEGEQARREALVPADSVGLKVASSYVSLEQDPGPR 873
Query: 245 IISSQLQEAYASIPQFRAQ-IDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVES 303
+ + + +D K L K+T+ I +P GL + FP N +Q M S
Sbjct: 874 DPLLLERLEEVLRDDSKQEGLDLLMKEGLSKITDKIQTATMPVGLEKAFPFNQMQAMTTS 933
Query: 304 GAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQ 363
GAKGS VN ISC LGQ LEG+R +MVSG++LP F P+E RAGG++ RF+TGI+
Sbjct: 934 GAKGSRVNASLISCNLGQQVLEGRRVPIMVSGKSLPCFNPFETHARAGGYIVQRFLTGIR 993
Query: 364 PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYG 423
PQE++FH MAGREGLIDTAVKTSRSGYLQRC++K +EGLTV YD TVRD+D S+IQ LYG
Sbjct: 994 PQEYYFHHMAGREGLIDTAVKTSRSGYLQRCVIKGMEGLTVAYDTTVRDADGSMIQFLYG 1053
Query: 424 EDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNF 483
EDGLDV+K++YLTD FSF+ +N+ S L+ P S G
Sbjct: 1054 EDGLDVSKQKYLTD--FSFILENVTSEASQ------LRYDP------------SVGDRLG 1093
Query: 484 IFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSV 543
+ TK+ L+ D KA+ P+ F P + SEN ++
Sbjct: 1094 MHRDAITKYMKKALKHTNIKDPKAQ-----------DPISGLFNPATTAFATSENFYKAM 1142
Query: 544 VKYTKGRTDASHVDKF----------------YDMIF-YKNLLSLANPGENVGVLAAQSI 586
Y K D DK +M+F K L SL PGE VG++A QS+
Sbjct: 1143 TSYIKENKDGLVRDKSDKNKLALSRVSLNKKNAEMLFAMKYLRSLVEPGEAVGIVAGQSV 1202
Query: 587 GEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKA 646
GEPSTQMTLNTFH AG NVTLGIPRLREILM A+ I TP+M I + +M + A
Sbjct: 1203 GEPSTQMTLNTFHLAGHSAKNVTLGIPRLREILMTASDKISTPAMSIYPIEEMSV--EDA 1260
Query: 647 NRLAKSMTRITMADVLEKVKIKEWL---EISPEPHMNYQMKFCFIPAHMYRDKTSVKPSK 703
AKS++ + + +L+ + ++E + +I + Y++ F + Y ++ S
Sbjct: 1261 EIFAKSISVLPLGFILDSINVEEKVGQGKIYGSAKI-YKVDIQFFDSEEYTKTYAINISD 1319
Query: 704 IIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRD-QMEDDVEDDEGEGAEGAGAALGRV 762
+++ ERK L L +A+ K+ + M+ + D + V + AE A G
Sbjct: 1320 VVEAVERKLLHRL-LALVKKDIRKRMTMSTMATPDVGAKAGVVETAAPNAEAA----GNF 1374
Query: 763 DVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNTSNIGERFKIEFRD- 821
D D+E ++DA + ++ + E + +D++ ++E + + + +F
Sbjct: 1375 DDDEDDEDGDDDATNAKQRAKRSEAVSYGPNDDDDDAVQQEMERDAGDDDADEDEDFGGS 1434
Query: 822 ---------------STNVFVKDVVNQHNIVHKYSYDKKNHMWC-----------KLLFL 855
S V+ Q+ V +S+D+K C K+L L
Sbjct: 1435 PQQAEGDGDGDDVDWSAKARTNRVLEQYAEVTDFSFDEKTGASCSFTLEYDSTIPKVLML 1494
Query: 856 -------------------PSNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDI 896
L EEK++K ++ T G+N+ + +Y +D N++ NDI
Sbjct: 1495 NLVQDAVRKTVIQEISGVGACTLVEEKDTK-VIHTAGVNLQAMQRYSDFIDPNRIQTNDI 1553
Query: 897 HYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLN 956
+ + YG+EAA + I++E+ VF +GI+VD RHL+L+ D+MT +G + NR G++ N
Sbjct: 1554 AAVLAVYGVEAARQNIVQELAGVFGSHGIKVDNRHLNLIGDHMTRNGGFTPFNRMGLKGN 1613
Query: 957 PSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
S KM+FE L ++ A + G D L PS R+++G+ + GTG F +
Sbjct: 1614 VSPFTKMSFETTLAFLKDAVLDGDWDDLSTPSGRLVMGRLGKVGTGGFDV 1663
>gi|346976952|gb|EGY20404.1| DNA-directed RNA polymerase I subunit RPA1 [Verticillium dahliae
VdLs.17]
Length = 1702
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 381/1092 (34%), Positives = 547/1092 (50%), Gaps = 133/1092 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL--- 69
+AEA + + QYL G PL GLIQDH+ L RD+F TR ++ LVY AL
Sbjct: 656 RAEALQIADTDHQYLSGTAGKPLRGLIQDHISVSVSLCSRDSFFTRGDFQQLVYAALRPE 715
Query: 70 --CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
IL + +PP I KP+P WTGKQV++T++ N+ P G +SG K Q
Sbjct: 716 SGHILGERLELVPPAIIKPVPRWTGKQVITTILKNIKPPTG----EGIWMSG---KTQTP 768
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
+ ++G + V + G L GILDK G + GL+H+V + +G A LLS L
Sbjct: 769 ADRWG--KGSEEGIVLFQDGHFLHGILDKAHLGPSSGGLIHSVHEVYGPAIAGKLLSSLG 826
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL----PLDTDP 243
+L T YL FT G+ D+ + E ++ R + +A +G + A + L P TD
Sbjct: 827 RLLTRYLNMRAFTCGMDDLRLTPEGEQTRRDTLREASDIGLQVATKYVSLGDSNPTSTDA 886
Query: 244 EIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVES 303
E++ +L+E + + +D +++ I + CLP GL++ FP N +Q M S
Sbjct: 887 ELLI-RLEEVMRDDNK-QEGLDMLMNQRSGELSQAITKACLPSGLVKQFPKNQMQAMTVS 944
Query: 304 GAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQ 363
GAKG VN ISC LGQ LEG+R +MVSG++LP F P++ S RAGG++ RF+TGI+
Sbjct: 945 GAKGGPVNANLISCNLGQQVLEGRRVPLMVSGKSLPCFKPFDSSVRAGGYIVQRFLTGIR 1004
Query: 364 PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYG 423
PQE++FH MAGREGLIDTAVKTSRSGYLQRC++K +EGLTV YD TVRD+D +LIQ LYG
Sbjct: 1005 PQEYYFHHMAGREGLIDTAVKTSRSGYLQRCIIKGMEGLTVSYDSTVRDADGTLIQFLYG 1064
Query: 424 EDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNF 483
EDGLD TK++YLTD F F+ NI+ S L +LA G +
Sbjct: 1065 EDGLDPTKQKYLTD--FGFILRNIE---SESAQLGFSSDFRETLA----------GNKDN 1109
Query: 484 IFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQ-PLISTFQPDAHFGSISENLADS 542
I ++ KY K K + P+IS P + SE +S
Sbjct: 1110 ILKHMKSAI-----------------KYAKAGKVGGKDPVISMVNPARVAFATSEKFYES 1152
Query: 543 VVKYTKGRTDA----------------SHVDKFYDMIF-YKNLLSLANPGENVGVLAAQS 585
+ +Y K D S K +++ K + SL GE VG++A QS
Sbjct: 1153 MTEYIKENKDGLVREKGEKRPATSFIPSVSKKSAELVLAAKYMRSLVEAGEGVGIVAGQS 1212
Query: 586 IGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKK 645
IGEPSTQMTLNTFH AG NVTLGIPRLREILM A+K I TPSM + + ++ E +
Sbjct: 1213 IGEPSTQMTLNTFHLAGHSAKNVTLGIPRLREILMTASKTISTPSMTLFPIAELSAAECE 1272
Query: 646 ANRLAKSMTRITMADVLEKVKIKEWLEISPEP--HMNYQMKFCFIPAHMYRDKTSVKPSK 703
KS++ + +A VL+ + E + H Y ++ F P+ Y +++ +
Sbjct: 1273 V--FQKSISVLPLAHVLDVASVNERAGKGKDGSLHRLYDVRLEFFPSEEYTKAYAIEAAD 1330
Query: 704 IIDHFERKFL------------KELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEG 751
++ E+KFL K+ ++ A G K +E DE E
Sbjct: 1331 VLAAVEKKFLGHLLKMMLKEIRKKTMMSSAATPVVGSKAGAVEMVTGSGARPAPRDEDED 1390
Query: 752 AEGAGAALGRVD----VSSDEERDEEDAVQSH--KKVNQEEDNDF--------------- 790
+ A A R + +S D++DAVQ+ ++ + +ED F
Sbjct: 1391 EDDATNAKQRANRSEAISYGPNDDDDDAVQNQMDREASPDEDEGFGGSPPPAGARRSSGN 1450
Query: 791 --------EEPEDE-----ERMSERE------EDDNTSNIGERFKIEFRDST-NVFVKDV 830
+ EDE ER+ ER D S F +EF +T + + D+
Sbjct: 1451 NDDDDDNGQSSEDEDSGRAERVKERHAHVTRFRSDEVSGKWCEFTLEFDANTPKLLLLDI 1510
Query: 831 VNQHNIVHKYSYDKKNHMWCKLLF----LPSNLFEEKESKHLLKTDGINVNFISQYRHLL 886
V Q + + C L+F +EK+ + T G N+ + +Y +
Sbjct: 1511 V-QAAVKKTVVQELPGVGACTLVFDHKVTDPETGKEKDVP-AIHTSGANLRIMQKYSDYI 1568
Query: 887 DLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYV 946
+ NK NDI + YG+EA I+ E+ NVF +GI VD RHL+L+ADYMT +G Y
Sbjct: 1569 NPNKTTTNDIAAVLDVYGVEACRSNIVLELGNVFGGHGISVDNRHLNLIADYMTRNGGYT 1628
Query: 947 AMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
NRNG+R N S KM+FE L ++ A + G D L PS+R+++G+ + GTG F +
Sbjct: 1629 PFNRNGLRGNVSPFTKMSFETTLAFLKDAVLDGDWDDLTTPSSRLVMGRLGKTGTGAFDV 1688
Query: 1007 RNREKKKKKVEA 1018
+ + + A
Sbjct: 1689 LTKLPTRHSISA 1700
>gi|400597994|gb|EJP65714.1| RNA polymerase Rpb1 [Beauveria bassiana ARSEF 2860]
Length = 1945
Score = 537 bits (1384), Expect = e-149, Method: Compositional matrix adjust.
Identities = 362/1079 (33%), Positives = 563/1079 (52%), Gaps = 138/1079 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL--- 69
++EA + + QYL G PL GLIQDH+ L RDTF T+ +Y +L+Y AL
Sbjct: 647 RSEALQIADTDHQYLSGTAGKPLRGLIQDHLSVSIALCNRDTFFTKGDYHSLIYSALRPE 706
Query: 70 --CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
IL+ + +PP I KP+ WTGKQV++T++ NL P SG+ G
Sbjct: 707 SGHILSERLELVPPAIIKPVHRWTGKQVITTILKNLKPAS---------CSGL---TMHG 754
Query: 128 STQYGLVHAVWDTH-----VTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISL 182
+TQ L W T+ V ++ GEL++GILDK Q G + GLVHA + +GA A L
Sbjct: 755 ATQ--LKAEQWGTNSEEGVVLVKDGELVTGILDKSQIGQSSGGLVHAAHEAYGAAIASKL 812
Query: 183 LSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTD 242
LSCL +L T L F+ G+ D+ + + ++ R + + +A +G + A + LP +TD
Sbjct: 813 LSCLGRLLTRLLNMRAFSCGMDDLRLTEAGEKARLQALAQASDMGLKIASKYVSLPDNTD 872
Query: 243 P--EIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFM 300
P ++ +L+E + + + +D +T + +VC+P GL +PFP N +Q M
Sbjct: 873 PTNNLLLERLEEV-SREDKKQECLDLLMNEGSRDITAEVQKVCIPNGLEKPFPRNQMQAM 931
Query: 301 VESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMT 360
SGAKGS VN ISC LGQ LEG+R +MVSG+TLP F P+E + G++ RF+T
Sbjct: 932 TTSGAKGSRVNASLISCNLGQQVLEGRRVPLMVSGKTLPCFKPFETHIGSAGYIRSRFLT 991
Query: 361 GIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQV 420
GI+PQE++FH MAGREGLIDTAVKTSRSGYLQRC++K LEGL V YD +VRD+D S+IQ
Sbjct: 992 GIRPQEYYFHHMAGREGLIDTAVKTSRSGYLQRCIIKGLEGLMVSYDASVRDADGSVIQF 1051
Query: 421 LYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGK 480
LYGEDGLDVTK++YLT+ F F+ +N+ ++ K K
Sbjct: 1052 LYGEDGLDVTKQKYLTN--FDFILENVAS---------------------EVVQLKYDTK 1088
Query: 481 PNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLA 540
+ +R F M ++ A K + K PLI ++ P + ++SE
Sbjct: 1089 VVETLTANRDAF-MKYMKS-------AVKHAKSKGTTSKDPLIGSYNPTTNTFAMSELFY 1140
Query: 541 DSVVKYTK---------------GRTDASHVDKFYDMIF-YKNLLSLANPGENVGVLAAQ 584
+++ Y K + A+ K + +F K SL PGE VG++A Q
Sbjct: 1141 EAMSNYVKENKSGLIREKSSHKQAQNSAALTRKNAETLFALKYQRSLIEPGEAVGIVAGQ 1200
Query: 585 SIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEK 644
S+GEPSTQMTLNTFH AG NVT GIPRLREILM A+ I TPSM++ L ++ E
Sbjct: 1201 SVGEPSTQMTLNTFHLAGHAATNVTQGIPRLREILMTASAVISTPSMKLHPLANISPDE- 1259
Query: 645 KANRLAKSMTRITMADVLEKVKIKEWL---EISPEPHMNYQMKFCFIPAHMYRDKTSVKP 701
A K +++ + ++ + ++E + +I + + Y++K F P++ Y ++
Sbjct: 1260 -AETFTKKISQTPLGYIVNDIAVEEQVGRGKIYNQAKI-YKIKIKFFPSNEYCPTYAITV 1317
Query: 702 SKIIDHFERKFLKE----LEVAIAKRAAQ--------GLKNMNIE--------QSRDQME 741
++++ E +++ ++ I KR+ G+++ +E +SRD +
Sbjct: 1318 PEVMNSLESTLMRQIIALMKKEIKKRSGPSTGATPEIGVRSGVVEVASAETSAESRDDDD 1377
Query: 742 DDVEDDEGEGAEGAGAALGR-VDVSSDEERDEEDAVQSHKKVNQEEDNDFEE-------- 792
D +D + A A R +VS + DE++A+Q + E++++ E+
Sbjct: 1378 KDDDDGDDADATSAKQRANRGEEVSYGDNDDEDNAIQQAMVQDAEDESEDEQMNGVSNGA 1437
Query: 793 PEDEERMSEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC-- 850
P + + +D+ N + + + ++ + V + N V + D+K WC
Sbjct: 1438 PAENGNKDDNVDDNMDDNKDDSEDDDMQSTSTARGERVKDTFNEVSDFKCDEKEGAWCSI 1497
Query: 851 ---------KLLFLPSNLFEEKESKHLLK----------------TDGINVNFISQYRHL 885
KLL L NL + SK +++ G+N+ + +
Sbjct: 1498 TIELDSNSPKLLML--NLVKSAVSKTMIREIRGVGACAYVKGAITASGVNLRAMQMFTDY 1555
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D +K+ ND+ + + YG+EA I+RE+ +F +GI VD RHL+L+ADYMT +G +
Sbjct: 1556 IDPDKIETNDVAAVLAMYGVEACRGSIVRELSGIFGGHGISVDNRHLNLIADYMTRNGAF 1615
Query: 946 VAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
A +R G++ N S KM+FE L ++ A + G D L PS R++LG+ + GT +
Sbjct: 1616 TAFSRMGLKGNVSPFTKMSFETTLAFLKDAVLDGDWDDLTTPSGRLVLGRLGKLGTAAY 1674
>gi|408395819|gb|EKJ74992.1| hypothetical protein FPSE_04812 [Fusarium pseudograminearum CS3096]
Length = 1694
Score = 537 bits (1383), Expect = e-149, Method: Compositional matrix adjust.
Identities = 379/1083 (34%), Positives = 546/1083 (50%), Gaps = 136/1083 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL--- 69
+AEA + + QYL G PL GLIQDH+ L RDTF T+ +Y LVY AL
Sbjct: 646 RAEALQIADTDHQYLSGTAGKPLRGLIQDHISVSVGLCNRDTFFTKGDYQQLVYNALRPE 705
Query: 70 --CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQ-- 125
I+ I + P I KP+P WTGKQV++T++ N+ P + G+ K Q
Sbjct: 706 SGHIVGERIELVAPAIIKPVPRWTGKQVITTILKNMQPPN---------CGGLCMKAQTQ 756
Query: 126 FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSC 185
++Q+G + V + GE +SGILDK Q G + G++HA+ + +G A LLS
Sbjct: 757 LKASQWG--SNSEEGTVLFQDGEFISGILDKSQIGPSSGGIIHAIHEIYGPAVAGKLLSS 814
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPE- 244
L +L T YL F+ G+ D+ + + ++ R + + A +G E A L T P
Sbjct: 815 LGRLLTRYLNMRAFSCGMEDLRLTPKGEQARREALKPADNVGIEVATALTSLAETTRPND 874
Query: 245 -IISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVES 303
+ +L+E + + +D K L KVT++I + +P GL + FP N +Q M S
Sbjct: 875 PLFLERLEEVMRDDKK-QEGLDLLMKERLSKVTDSIEKATMPHGLEKAFPFNQMQAMTTS 933
Query: 304 GAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQ 363
GAKGS VN ISC LGQ LEG+R +MVSG++LP F P+E RAGG++ RF+TGI+
Sbjct: 934 GAKGSRVNANLISCNLGQQVLEGRRVPIMVSGKSLPCFDPFETHARAGGYIVQRFLTGIR 993
Query: 364 PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYG 423
PQE++FH MAGREGLIDTAVKTSRSGYLQRC++K +EGLTV YD TVRD+D S+IQ +YG
Sbjct: 994 PQEYYFHHMAGREGLIDTAVKTSRSGYLQRCVIKGMEGLTVAYDTTVRDADGSMIQFMYG 1053
Query: 424 EDGLDVTKRQYLTDKQFSFLEDNIKWICSY----KVILNLLKKHPLSLALLLLLTFKSSG 479
EDGLD K++YL D FSF+ +N+ + + L H ++ + K +
Sbjct: 1054 EDGLDACKQKYLED--FSFILENVTSEAAQLRYDPSVGERLGMHRDAITKYM----KKAL 1107
Query: 480 KPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQ-PLISTFQPDAHFGSISEN 538
KP I P DL KY KK Q P+ S F P + SE
Sbjct: 1108 KPTNINEPE----AKDL-------------KYLKKNDPKAQDPISSHFNPATTAFATSEK 1150
Query: 539 LADSVVKYTKGRTDASHVDKF----------------YDMIF-YKNLLSLANPGENVGVL 581
+ KY K D DK +M+F K L SL PGE VG++
Sbjct: 1151 FFWKMTKYLKENKDGLVRDKSDKNKQALSRVSLNKKNAEMLFAMKYLRSLVEPGEAVGIV 1210
Query: 582 AAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPK 641
A QS+GEPSTQMTLNTFH AG NVTLGIPRLREILM A+ I TPSM I + +M
Sbjct: 1211 AGQSVGEPSTQMTLNTFHLAGHSAKNVTLGIPRLREILMTASNKISTPSMSIYPIDEMSV 1270
Query: 642 LEKKANRLAKSMTRITMADVLEKVKIKEWLEISP--EPHMNYQMKFCFIPAHMYRDKTSV 699
+ AN AKS++ + + +L+ + ++E + Y + F + Y + ++
Sbjct: 1271 --EDANIFAKSISVLPLGYILDSIHVEEKVGQGKMYGSAKIYSIDIKFFDSKEYTETYAI 1328
Query: 700 KPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAG--- 756
K S ++D E+K L L + + + + + ++ V + AE AG
Sbjct: 1329 KTSDVVDAVEKKLLHRLLSLLKRDIKKRQTHSTMATPEIGVKAGVVETAAPNAEAAGNFD 1388
Query: 757 ------------AALGRVD----VSSDEERDEEDAVQSH----KKVNQEEDNDFEEPEDE 796
A R + VS D++DAVQ +D F + +
Sbjct: 1389 DDDDEEGDDDATNAKQRANRSEAVSYGPNDDDDDAVQEEMGRDAADADLDDEGFSGSQRQ 1448
Query: 797 ERMSEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC------ 850
E EED+ N G + V V+ Q+ V +++D+KN C
Sbjct: 1449 AGDEEDEEDNGVINWGAK----------VRTNRVLEQYEEVTDFTFDEKNGTECSFTLEF 1498
Query: 851 -----KLLFL-------------------PSNLFEE-KESKHL--LKTDGINVNFISQYR 883
K+L L N EE K++K + + T+G+N+ + QY
Sbjct: 1499 DSAIPKVLMLNLVQDAVKKTVIQEISGVGSCNYHEETKDNKKIRVIHTEGVNLQAMQQYS 1558
Query: 884 HLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSG 943
++ N + NDI + YG+EAA + I+ E+ VF +GI+VD RHL+L+ D+MT +G
Sbjct: 1559 DFINPNNIQTNDIAAVLEVYGVEAARQNIVNELDGVFGSHGIKVDNRHLNLIGDHMTRNG 1618
Query: 944 TYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGL 1003
+ NR G++ N S KM+FE L ++ A + G D L PS R+++G+ + GTG
Sbjct: 1619 GFTPFNRMGLKGNVSPFTKMSFETTLGFLKDAVLDGDWDDLSTPSGRLVMGRLGKVGTGG 1678
Query: 1004 FQL 1006
F +
Sbjct: 1679 FDV 1681
>gi|389640261|ref|XP_003717763.1| DNA-directed RNA polymerase I subunit RPA1 [Magnaporthe oryzae 70-15]
gi|351640316|gb|EHA48179.1| DNA-directed RNA polymerase I subunit RPA1 [Magnaporthe oryzae 70-15]
gi|440471843|gb|ELQ40777.1| DNA-directed RNA polymerase I subunit RPA1 [Magnaporthe oryzae Y34]
gi|440483991|gb|ELQ64198.1| DNA-directed RNA polymerase I subunit RPA1 [Magnaporthe oryzae P131]
Length = 1719
Score = 536 bits (1381), Expect = e-149, Method: Compositional matrix adjust.
Identities = 388/1103 (35%), Positives = 560/1103 (50%), Gaps = 167/1103 (15%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL--- 69
+ EA L + QY+ G PL GLIQDH+ L +DT+L R+ Y LVY AL
Sbjct: 660 RTEALQLADTDHQYISGTQGKPLRGLIQDHLSVSVALCNKDTYLDRSAYHELVYNALRPE 719
Query: 70 --CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
IL I +PP I KP WTGKQV++TV+ N+ P D G+L + K Q
Sbjct: 720 SGHILRERIELVPPAIIKPKARWTGKQVITTVLRNIRPLD-----CGDLW--MTGKTQVP 772
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
+ +G VH+ + V R GE +SGILDK Q G + GLVHAV + +G A LLS +
Sbjct: 773 AHAWG-VHS-EEGQVLFRDGEFISGILDKAQLGPSSGGLVHAVHEVYGPAIAGKLLSAMG 830
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIIN-KARRLGTEAACNALGL----PLDTD 242
+L T YL FT G+ D+ + E + R II+ +A +G + A + L P + D
Sbjct: 831 RLLTRYLNMRAFTCGMDDLKLTPEGEADRRNIIDSRAHLVGLQVAAKYVSLDQHQPANDD 890
Query: 243 PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
PE++ +L+E + + +D S ++ +I CLP+GL + FP N +Q M
Sbjct: 891 PELLR-RLEEVMRDDTK-QEGLDGVMNSGSKHLSQDITTACLPKGLEKQFPKNQMQAMTI 948
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
SGAKG VN ISC LGQ LEG+R +MVSG++LP F P+E RAGG++ RF+TGI
Sbjct: 949 SGAKGGQVNANLISCNLGQQVLEGRRVPLMVSGKSLPCFKPFETDIRAGGYIVNRFLTGI 1008
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
+PQE++FH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL + YD +VRD+D SL+Q LY
Sbjct: 1009 RPQEYYFHHMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLEIGYDNSVRDADGSLVQFLY 1068
Query: 423 GEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPN 482
GEDGLDVTK++YL D F+F+ NIK S LN+ P +L L L
Sbjct: 1069 GEDGLDVTKQKYLKD--FTFILHNIK---SELAQLNI--SDPRTLPLFELRD-------- 1113
Query: 483 FIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACP-----QPLISTFQPDAHFGSISE 537
++L+Q K KK KA P +P+ S P + + SE
Sbjct: 1114 ------------EILKQ--------NKSNLKKAKANPRFFTGEPVSSMLNPTRYAYATSE 1153
Query: 538 NLADSVVKYTKGRTDA---SHVDKFYD------------------MIFYKNLLSLANPGE 576
D++ Y K DA DK + ++ K + SL +PGE
Sbjct: 1154 KFFDAMSSYVKENPDALIKEKDDKLRNSGPQSSSIVRLNRKAAEKVLSAKYMRSLVHPGE 1213
Query: 577 NVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFL 636
VG++A QS+GEPSTQMTLNTFH AG NVTLGIPRLRE+LM A+ I TPSM +
Sbjct: 1214 AVGIVAGQSVGEPSTQMTLNTFHLAGHSAKNVTLGIPRLRELLMTASSKISTPSMTLILN 1273
Query: 637 PDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMN--YQMKFCFIPAHMYR 694
+M + + AK+++ + ++ V++K + E + S + + ++ F P+ Y
Sbjct: 1274 EEMSPAD--GEKFAKAISMLPLSHVVDKATVFERVGTSINHKLAKMFDVRLRFFPSAEYT 1331
Query: 695 DKTSVKPSKIIDHFERKFL--------KELEVAIAKRAAQ----GLKNMNIEQSRDQMED 742
++ S +++ E KF+ KE++ +K +A G K +E + E+
Sbjct: 1332 KTYAITTSDVLNTVETKFMSTLRRLVAKEIKTKGSKESAATPVIGEKVGTVEMAAPASEN 1391
Query: 743 DVEDDEGEGAEGAGAALGRVD-------VSSDEERDEEDAVQSHKKVNQEEDNDFEE--- 792
D++ + E G A VS D++D +Q QE++ +FE+
Sbjct: 1392 GPRDEDDDSDEDEGDATADKQKANRSEAVSYGPNDDDDDVIQRQ----QEQEAEFEDEGL 1447
Query: 793 -----PEDEERMSEREEDDNTSNIGERFKIEFRDSTNVFVKD----VVNQHNIVHKYSYD 843
PE + ++ +DD +E D KD V +++ ++ D
Sbjct: 1448 GGSPPPESSKNVTAGGDDD------PHMHMELDDVAQAKAKDRELRVRDKNPECIRFRCD 1501
Query: 844 KKNHMWC-----------KLLFLP------------------SNLF--EEK--------E 864
+ + WC K+L L S F EEK E
Sbjct: 1502 ETSGEWCEITLEYDIGIPKILMLSLVQDAVRKALVQQIPGIKSGTFVAEEKVTDPWTGRE 1561
Query: 865 SK-HLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
S+ L+ T G N+ + QY ++ N++ ND+ + YG+EA IIRE++ VF +
Sbjct: 1562 SEVSLVHTAGSNLRAMQQYGSFINPNRISTNDVAAVLEIYGVEACRANIIRELRAVFESH 1621
Query: 924 GIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDS 983
I VD RHL+L+AD+MT SG + NR G+ N S KM+FE L ++ A + G D
Sbjct: 1622 AITVDNRHLNLIADHMTRSGGFTPFNRMGLSGNVSPFTKMSFETTLAFLKDAVLDGDWDD 1681
Query: 984 LRAPSARVMLGQECRQGTGLFQL 1006
L PS R+++G+ GTG F +
Sbjct: 1682 LSTPSGRLVMGRLGHVGTGAFDV 1704
>gi|46116898|ref|XP_384467.1| hypothetical protein FG04291.1 [Gibberella zeae PH-1]
Length = 1694
Score = 536 bits (1381), Expect = e-149, Method: Compositional matrix adjust.
Identities = 374/1083 (34%), Positives = 541/1083 (49%), Gaps = 136/1083 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL--- 69
+AEA + + QYL G PL GLIQDH+ L RDTF T+ +Y LVY AL
Sbjct: 646 RAEALQIADTDHQYLSGTAGKPLRGLIQDHISVSVGLCNRDTFFTKGDYQQLVYNALRPE 705
Query: 70 --CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQ-- 125
I+ I + P I KP+P WTGKQV++T++ N+ P + G+ K Q
Sbjct: 706 SGHIVGERIELVAPAIIKPVPRWTGKQVITTILKNMQPPN---------CGGLCMKAQTQ 756
Query: 126 FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSC 185
++Q+G + + V + GE +SGILDK Q G + G++HA+ + +G A LLS
Sbjct: 757 LKASQWG--NNSEEGTVLFQDGEFISGILDKSQIGPSSGGIIHAIHEIYGPAVAGKLLSS 814
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPE- 244
L +L T YL F+ G+ D+ + + + R + A +G E A L T P
Sbjct: 815 LGRLLTRYLNMRAFSCGMEDLRLTPKGEEARRAALKPADNVGIEVATALTSLAETTRPND 874
Query: 245 -IISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVES 303
+ +L+E + + +D K L KVT++I + +P GL + FP N +Q M S
Sbjct: 875 PLFLERLEEVMRDDKK-QEGLDLLMKERLSKVTDSIEKATMPHGLEKAFPFNQMQAMTTS 933
Query: 304 GAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQ 363
GAKGS VN ISC LGQ LEG+R +MVSG++LP F P+E RAGG++ RF+TGI+
Sbjct: 934 GAKGSRVNANLISCNLGQQVLEGRRVPIMVSGKSLPCFDPFETHARAGGYIVQRFLTGIR 993
Query: 364 PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYG 423
PQE++FH MAGREGLIDTAVKTSRSGYLQRC++K +EGLTV YD TVRD+D S+IQ +YG
Sbjct: 994 PQEYYFHHMAGREGLIDTAVKTSRSGYLQRCVIKGMEGLTVAYDTTVRDADGSMIQFMYG 1053
Query: 424 EDGLDVTKRQYLTDKQFSFLEDNIKWICSY----KVILNLLKKHPLSLALLLLLTFKSSG 479
EDGLD K++YL D FSF+ +N+ + + L H ++ + K +
Sbjct: 1054 EDGLDACKQKYLED--FSFILENVTSEAAQLRYDPSVGERLGMHRDAITKYM----KKAL 1107
Query: 480 KPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENL 539
KP I P + K K +K P+ S F P + SE
Sbjct: 1108 KPTNINEP----------------EAKDLKYLKKNDPKAHDPISSHFNPATTAFATSEKF 1151
Query: 540 ADSVVKYTKGRTDASHVDKF----------------YDMIF-YKNLLSLANPGENVGVLA 582
+ KY K D DK +M+F K L SL PGE VG++A
Sbjct: 1152 FWKMTKYLKENKDGLVRDKSDKNKQALSRVSLNKKNAEMLFAMKYLRSLVEPGEAVGIVA 1211
Query: 583 AQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKL 642
QS+GEPSTQMTLNTFH AG NVTLGIPRLREILM A+ I TPSM I + +M
Sbjct: 1212 GQSVGEPSTQMTLNTFHLAGHSAKNVTLGIPRLREILMTASNKISTPSMSIYPIDEMSV- 1270
Query: 643 EKKANRLAKSMTRITMADVLEKVKIKEWL---EISPEPHMNYQMKFCFIPAHMYRDKTSV 699
+ AN AKS++ + + +L+ + ++E + ++ + Y + F A Y + ++
Sbjct: 1271 -EDANIFAKSISVLPLGYILDSIHVEEKVGQGKMYGSAKI-YSIDIKFFDAKEYTETYAI 1328
Query: 700 KPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAG--- 756
K S ++D E+K L L + + + + + ++ V + AE AG
Sbjct: 1329 KTSDVVDAVEKKLLHRLLSLLKRDIKKRQTHSTMATPEIGVKAGVVETAAPNAEAAGNFD 1388
Query: 757 ------------AALGRVD----VSSDEERDEEDAVQSH----KKVNQEEDNDFEEPEDE 796
A R + VS D++DAVQ +D F + +
Sbjct: 1389 DDDDEEGDDDATNAKQRANRSEAVSYGPNDDDDDAVQEEMGRDAADADLDDEGFSGSQRQ 1448
Query: 797 ERMSEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC------ 850
E EED N G + V V+ Q+ V +++D+KN C
Sbjct: 1449 AGDEEDEEDSGVVNWGAK----------VRTNRVLEQYEEVTDFTFDEKNGTECSFTLEF 1498
Query: 851 -----KLLFL-------------------PSNLFEEKESK---HLLKTDGINVNFISQYR 883
K+L L N EE ++ T+G+N+ + QY
Sbjct: 1499 DSAIPKVLMLNLVQDAVKKTVIQEISGVGSCNYHEETRDNKKIRVIHTEGVNLQAMQQYS 1558
Query: 884 HLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSG 943
++ N + NDI + YG+EAA + I+ E+ VF +GI+VD RHL+L+ D+MT +G
Sbjct: 1559 DFINPNNIQTNDIAAVLEVYGVEAARQNIVNELDGVFGSHGIKVDNRHLNLIGDHMTRNG 1618
Query: 944 TYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGL 1003
+ NR G++ N S KM+FE L ++ A + G D L PS R+++G+ + GTG
Sbjct: 1619 GFTPFNRMGLKGNVSPFTKMSFETTLGFLKDAVLDGDWDDLSTPSGRLVMGRLGKVGTGG 1678
Query: 1004 FQL 1006
F +
Sbjct: 1679 FDV 1681
>gi|367055126|ref|XP_003657941.1| hypothetical protein THITE_2124200 [Thielavia terrestris NRRL 8126]
gi|347005207|gb|AEO71605.1| hypothetical protein THITE_2124200 [Thielavia terrestris NRRL 8126]
Length = 1722
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 375/1106 (33%), Positives = 559/1106 (50%), Gaps = 158/1106 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL--- 69
+AEA L + QY+ G+PL GLIQDH+ L +D FL + +Y LVY AL
Sbjct: 674 RAEALQLADTDHQYISGTAGNPLRGLIQDHLSVSVALCSKDVFLDQGDYHQLVYSALRPE 733
Query: 70 --CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL-LSGILDKKQF 126
I I +PP + KP+P WTGKQV++T++ N+ P D G+L ++G +
Sbjct: 734 SGHITGERIELVPPAVIKPIPRWTGKQVITTILKNIRPAD-----CGDLWMNG---SAKI 785
Query: 127 GSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCL 186
S +G A + V R GE + GILDK Q G + G +HAV + +G A LLS +
Sbjct: 786 KSRSWG--EASEEGEVMFRDGEFICGILDKSQLGPSDGGFIHAVHEVYGPSVAGKLLSGM 843
Query: 187 AKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL----PLDTD 242
+L T YL V FT G+ D+ + + ++ R + I A +G + A + L P D
Sbjct: 844 GRLLTRYLAMVAFTCGMDDLRMTPQGEKDRKETIKAASHIGLQVAAKYVSLEEQKPTSDD 903
Query: 243 PEIISSQLQEAYASIPQFRAQIDRQYKSLLD-----KVTNNINQVCLPEGLIEPFPANNL 297
P ++ +L+E R ++ LL K++ I ++CLP GL + FP N++
Sbjct: 904 P-VLLERLEEV------LRDDKKQEGLELLTSQECAKLSTEITRLCLPAGLEKQFPKNHM 956
Query: 298 QFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGR 357
Q M SGAKGS VN ISC LGQ LEG+R +MVSG+TLPSF P++ RAGG++ R
Sbjct: 957 QSMTISGAKGSPVNANLISCNLGQQVLEGRRVPVMVSGKTLPSFKPFDTDVRAGGYIVNR 1016
Query: 358 FMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSL 417
F+TGI+PQE++FH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL V YD +VRDSD ++
Sbjct: 1017 FLTGIRPQEYYFHHMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLRVSYDSSVRDSDGTV 1076
Query: 418 IQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKS 477
+Q L+GEDG+D++K++YL D +F V+ NL + P + +
Sbjct: 1077 VQFLFGEDGIDISKQKYLNDFEF--------------VLRNLDSQLPQ-------IRYHE 1115
Query: 478 SGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACP-QPLISTFQPDAHFGSIS 536
G T L E ++ + + R + P P+ S P A + S
Sbjct: 1116 PG-------------TQALFEHKDEVIKRMKSAIRSRNSRNPLDPVASELDPTAFAFATS 1162
Query: 537 ENLADSVVKYTKGRTDASHVDK-------------FYDMIFY-KNLLSLANPGENVGVLA 582
E + +Y K D +K + IF K L SL PGE VG++A
Sbjct: 1163 EKFFSKLTEYVKTNKDGLIKEKKGPESQKGLITRKTAEKIFAAKYLRSLVEPGEAVGIVA 1222
Query: 583 AQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKL 642
QS+GEPSTQMTLNTFH AG NVTLGIPRLREILM A+ I TPSM + ++
Sbjct: 1223 GQSVGEPSTQMTLNTFHLAGHSARNVTLGIPRLREILMTASAKISTPSMTLVLNEELS-- 1280
Query: 643 EKKANRLAKSMTRITMADVLEKVKIKEWL--EISPEPHMNYQMKFCFIPAHMYRDKTSVK 700
E+ R AKS++ + +A V ++ ++E + I +++++ F A Y ++
Sbjct: 1281 EQDGERFAKSISVLPLAHVTKEAVVRERVGHGIGYALAKSFEIRLRFFEAEEYIKMYAID 1340
Query: 701 PSKIIDHFERKFL--------KELEVAIAKRAAQ----GLKNMNIEQSRDQMEDDVEDDE 748
+ +++ E+KF+ KE++ + +A G+K +E + E ED
Sbjct: 1341 IADVLNTVEKKFIPLLCALTRKEIKKKFKEHSAATPEIGVKVGVVETAPSGGER--EDGP 1398
Query: 749 GE-------------GAEGAGAALGRVDVSSDEERDE-EDAVQSHKKVNQEEDNDFEEPE 794
G A A R + S DE +DAVQ + +D + EE
Sbjct: 1399 GNRDDDDDDDDGDDDDATSAKQRANRSEAVSYGPNDEDDDAVQQQVQRETADDEEGEERL 1458
Query: 795 D--EERMSEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC-- 850
+ +E E ++ +G++ EFR + V N++ V ++ D+ W
Sbjct: 1459 NFVDEAYGGSPEPEDGVGVGDKTD-EFRARSR--EARVKNKNEHVARFRCDEVGGEWVEF 1515
Query: 851 ---------KLLFLP------------------SNLFEEKESKH-----------LLKTD 872
K+L L + FE K+ + L+ T+
Sbjct: 1516 TLEFDAGIPKILMLSLVQEAVKKSLIQQIHRLGTATFEPKKKRDEVTGEERIVEMLVHTE 1575
Query: 873 GINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHL 932
G N+ + QY ++ N++ NDI + YG+EA I+RE++ VF+ +GI VDPRHL
Sbjct: 1576 GANLRAMQQYGDYINPNRISTNDIAQVLEVYGVEACRNNIVRELRGVFSSHGIAVDPRHL 1635
Query: 933 SLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVM 992
+L+ADYMT +G + NR G+ N S KM++E + ++ A + G D+L PS+R++
Sbjct: 1636 NLIADYMTRNGGFTPFNRIGLTGNVSPFTKMSYETTVGFLKDAVLDGDWDTLATPSSRLV 1695
Query: 993 LGQECRQGTGLFQLRNREKKKKKVEA 1018
+G+ GTG F + R + KV A
Sbjct: 1696 VGKLGTVGTGSFDVLTRVPTEHKVVA 1721
>gi|361125598|gb|EHK97632.1| putative DNA-directed RNA polymerase I subunit rpa1 [Glarea
lozoyensis 74030]
Length = 1558
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 351/1040 (33%), Positives = 527/1040 (50%), Gaps = 153/1040 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL--- 69
+AE + + QYL G PL GLIQDH+ + RDTF RA Y L+Y +L
Sbjct: 560 RAEVLQIADTDHQYLAGTFGKPLRGLIQDHISVSVWMCSRDTFFDRATYQQLIYNSLRPE 619
Query: 70 --CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
I+ I T+ P I KP PLWTGKQV++T++ N+ P D + G+ K
Sbjct: 620 SGHIVGDRIETVTPAIIKPKPLWTGKQVITTILRNIKPVDCAPL-------GLNSKPSVP 672
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
++G + V + GE ++GILDK Q G + G +HA+ + +G A LS L
Sbjct: 673 GDRWG--SDSNEDRVLFKGGEFITGILDKAQIGPSGGGFIHAIHEVYGPTAAGKTLSILG 730
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL----PLDTDP 243
+L T +L FT G+ D+ + ++ R + +A RLG E A + L P DTD
Sbjct: 731 RLLTKFLHMRAFTCGMDDLRLTPRGEQARRDTLKEAHRLGLEVASKYVSLQDQKPTDTDA 790
Query: 244 EIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVES 303
E++ + E + +D + +++ I + CLP+GL++ FP N +Q M S
Sbjct: 791 ELM--ERMEDVLRDDSKQGGLDVMMNARSGNLSSQITKACLPDGLVKQFPKNQMQNMTVS 848
Query: 304 GAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQ 363
GAKGS VN ISC LGQ LEG+R +MVSG++LP F PYE + RAGG++ RF++GI+
Sbjct: 849 GAKGSAVNANLISCNLGQQVLEGRRVPVMVSGKSLPCFRPYETNIRAGGYIVNRFLSGIR 908
Query: 364 PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYG 423
PQE++FH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL V YD +VRDSD S++Q LYG
Sbjct: 909 PQEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKVEYDTSVRDSDGSMVQFLYG 968
Query: 424 EDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNF 483
EDGLDVTK+ +L D F FL +NI + L L + G PN+
Sbjct: 969 EDGLDVTKQVHLQD--FKFLLENI-------------------TSELSQLNY---GDPNY 1004
Query: 484 IFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKAC-------PQPLISTFQPDAHFGSIS 536
EQ + + KK +K K P P++S+F P + + S
Sbjct: 1005 --------------EQIFSEKEIILKKMKKALKYSKANDPNGPDPVLSSFNPGKYGYATS 1050
Query: 537 ENLADSVVKYTKGRTDASHVDKFY-----------DMIFYKNLLSLANPGENVGVLAAQS 585
E D++ Y K D DK + ++ K L S+ +PGE VG++A QS
Sbjct: 1051 EKFYDALTNYLKANPDGMVKDKEHPDGVGVRKALEPVLMAKYLKSVVDPGEAVGIVAGQS 1110
Query: 586 IGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKK 645
+GEPSTQMTLNTFH AG NVTLGIPRLREI+M A+ I TPSM + ++ +
Sbjct: 1111 VGEPSTQMTLNTFHLAGHSTKNVTLGIPRLREIVMTASNHISTPSMTLRVNDELSA--ED 1168
Query: 646 ANRLAKSMTRITMADVLEKVKIKEWL--EISPEPHMNYQMKFCFIPAHMYRDKTSVKPSK 703
+ AK ++ +++ +VL++ +KE + ++ Y+++ P+ Y D ++ +
Sbjct: 1169 GEKFAKGISVLSLGEVLDEATVKERVGRGVAFSEARIYEVQVKLFPSKEYIDTYAITVAD 1228
Query: 704 IIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDV-EDDEGEGA-EGAGAALGR 761
++ E+KF +L+ A+ +RA L E+S + V E + GA E AA R
Sbjct: 1229 VLHTLEKKFAPKLQ-ALTRRA---LGRKKEEKSSKSTKGGVPEIGKSVGAIEDPAAATRR 1284
Query: 762 VD-------------------------VSSDEERDEEDAVQSH-KKVNQEEDNDFEEPED 795
VS E +E+D VQ+ +K ++++D D + ED
Sbjct: 1285 GSEDPQAEDEDDDIEEDDAKQVNANALVSYAENDEEDDQVQAQMQKDSEQDDADVPDMED 1344
Query: 796 EERMSEREEDDNTSNIGERFKIEFRDSTNVFVK---DVVNQHNIVHKYSYDKKNHMWCKL 852
E E D+ ++ + + +T + V+ + V ++ +D++ WC +
Sbjct: 1345 EGIGGSPREPDSDGEGQQKVDRQEQRATEASAEREARVMKNCSDVVRFRFDEEAGEWCDI 1404
Query: 853 L-----------------------------------FLP---SNLFEEKESKHLLKTDGI 874
++P S+ + K +++T G+
Sbjct: 1405 TLEYAADVPKILMMTVVEDALRQCLIQQIPGLGACNYIPNQDSSKYGNKIHLPVVQTVGV 1464
Query: 875 NVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSL 934
N+ + Y H+++ N + NDI M + YG+EA II+E+ VF + I VD RHL+L
Sbjct: 1465 NLKAMQTYPHIINPNTISTNDIAAMLANYGVEACRATIIQELAGVFGGHAISVDNRHLNL 1524
Query: 935 VADYMTHSGTYVAMNRNGIR 954
+AD+MT G + NRNG+R
Sbjct: 1525 IADFMTRGGGFSPFNRNGLR 1544
>gi|299747435|ref|XP_002911169.1| RNA polymerase I largest subunit [Coprinopsis cinerea okayama7#130]
gi|298407517|gb|EFI27675.1| RNA polymerase I largest subunit [Coprinopsis cinerea okayama7#130]
Length = 1726
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 305/734 (41%), Positives = 429/734 (58%), Gaps = 69/734 (9%)
Query: 7 NASHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVY 66
+ +H +AEA+F+ N +QYLVP G+PL GLIQDHV++G ++ ++ F TR EY L+Y
Sbjct: 676 DENHVARAEATFIANTDNQYLVPTSGNPLRGLIQDHVVAGVWMTSQNAFFTREEYFQLLY 735
Query: 67 QAL----CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPK--DKVIIRHGELLSGI 120
AL N+ + TL P IWKP PLWTGKQ++STV+ N+TP+ + + ++ + G
Sbjct: 736 GALRPEDSESNSRLVTLSPAIWKPQPLWTGKQIISTVLKNITPRNFEGLNLKAKTKVPGF 795
Query: 121 LDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAI 180
L K Q V GELL G+LDK FG++ YGLVH+V++ +GAE A
Sbjct: 796 LWGKDSKEDQ-----------VIFLDGELLCGVLDKSAFGASDYGLVHSVYEVYGAEIAG 844
Query: 181 SLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNAL----G 236
LL L++LFT +LQ FT + D+++ D+KR +I + + LGTE A G
Sbjct: 845 KLLGILSRLFTKFLQHRAFTCRMDDLILTPTGDKKRADLIERGKNLGTEGAIENFPSLSG 904
Query: 237 LPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANN 296
+P + PE + + L+ + A +D K+ L K+T++I+ CLP L+ FP N+
Sbjct: 905 VPKEEVPEQLRNLLETVLRDDNKM-AGLDVTVKTKLSKLTSSISDACLPNELLRKFPYNH 963
Query: 297 LQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDG 356
+Q M SGAKGS VN QISC LGQ ELEG+R +MVSG+TLPSF +E AGG+V
Sbjct: 964 MQTMTLSGAKGSAVNARQISCALGQQELEGRRVPVMVSGKTLPSFKAFETKAIAGGYVAS 1023
Query: 357 RFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLS 416
RF+TGI+PQEF+FHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEGL VHYD TVR SD S
Sbjct: 1024 RFLTGIKPQEFYFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLRVHYDNTVRGSDNS 1083
Query: 417 LIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFK 476
+ Q YG DGLDVTK+++L QF+F+ N I + ++ N + H + K
Sbjct: 1084 VYQFSYGGDGLDVTKQKHLY--QFAFIAQNSLSI-ARRLNPNAVANH---------MDLK 1131
Query: 477 SSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSIS 536
++ P+++ +L + + + K R ++ P++S + P+ + GS S
Sbjct: 1132 TA--PSYM---------KKVLRKSAERESPCGKAPRDEY----DPVLSVYNPNKYLGSTS 1176
Query: 537 ENLADSVVKYTKGRTDASHVDK-----------------FYDMIFYKNLLSLANPGENVG 579
E A +V +Y K D ++K F ++ K + SL PGE VG
Sbjct: 1177 EQFATAVRQYIKANPDGLLIEKSEKPRFPTRYPPMLSKNFQLLMNVKYMRSLVEPGEAVG 1236
Query: 580 VLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDM 639
+LA+Q +GEPSTQMTLNTFHFAG G NVTLGIPRLREI+M A++ KTPSM + P
Sbjct: 1237 LLASQGVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTASQKPKTPSMTMKVKPGT 1296
Query: 640 PKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEP-HMNYQMKFCFIPAHMYRDKTS 698
K +R+T++ ++E V + E L + + + + F P Y +
Sbjct: 1297 SP--DDVTLFCKRASRVTLSQLVEGVTVDEQLCVEGQARRTQFTVTINFFPREEYLAEHD 1354
Query: 699 VKPSKIIDHFERKF 712
V+P +I+ F KF
Sbjct: 1355 VEPVEILSVFGTKF 1368
Score = 108 bits (271), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 84/143 (58%), Gaps = 5/143 (3%)
Query: 869 LKTDGINVNFISQY-----RHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
L T+G N+ + ++ +L+ +++Y NDI+ + TYG+E A I++EV VFA Y
Sbjct: 1579 LTTNGSNLRGMWEFASGSDESILEDDEIYSNDIYALLKTYGVEMARAAILKEVGGVFAAY 1638
Query: 924 GIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDS 983
I+VD RHL L+ADYMT G Y NR G+ NPS + K ++E + A++ G D
Sbjct: 1639 SIQVDRRHLELIADYMTFDGGYKPFNRKGLSTNPSPLLKASYETTAAFLSDATLYGDFDD 1698
Query: 984 LRAPSARVMLGQECRQGTGLFQL 1006
L PS ++LG+ GTG+F +
Sbjct: 1699 LTTPSGNIVLGRPNATGTGVFDV 1721
>gi|240278768|gb|EER42274.1| DNA-directed RNA polymerase I [Ajellomyces capsulatus H143]
Length = 1676
Score = 531 bits (1367), Expect = e-147, Method: Compositional matrix adjust.
Identities = 367/1063 (34%), Positives = 552/1063 (51%), Gaps = 123/1063 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+ EA L + QYL G PL GLIQDH+ G + RDTF + +Y L+Y L
Sbjct: 663 RVEAMQLADTDHQYLSATAGKPLRGLIQDHISMGTWFTSRDTFFDKDDYYQLLYNCLRPE 722
Query: 73 NTEIRT-----LPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
N+ T + P I +P LWTGKQV+ST+++N+TP+ +G L+G K +
Sbjct: 723 NSHTVTDKILLMKPAILRPRKLWTGKQVISTIMMNITPER----FYGLNLTG---KSRTP 775
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
++G + V R GELL GILD Q G + GL+H+V + +G A LL L
Sbjct: 776 GDRWG--EGSEEGQVIFRDGELLCGILDSAQLGPSPGGLIHSVHEIYGHVVAGKLLGVLG 833
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL---PLDTDPE 244
+L T +L FT G+ D+ + ++ + R K + +A +G A + L + +
Sbjct: 834 RLLTKFLHMRAFTCGIDDLRLTKKGNEDRRKKLQEAEHIGRHVALKYVTLDQTKFEDEEA 893
Query: 245 IISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESG 304
+ +L++A + +A +D S ++++I CLP GL +PFP N +Q M SG
Sbjct: 894 ELKRRLEDALRD-DEKQAGLDAVLNSQAADISSDITAACLPVGLEKPFPWNQMQTMTTSG 952
Query: 305 AKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQP 364
AKGS VN ISC LGQ LEG+R +M+SG+TLPSF P++ + A GFV GRF+TGI+P
Sbjct: 953 AKGSVVNANLISCNLGQQVLEGRRVPVMISGKTLPSFRPFDTNLMASGFVSGRFLTGIKP 1012
Query: 365 QEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRD-SDLSLIQVLYG 423
QE++FH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL YD +VR+ +D S++Q LYG
Sbjct: 1013 QEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKAEYDNSVRETTDGSVMQFLYG 1072
Query: 424 EDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNF 483
EDGL++TK+++L D F FL N + V+ L +G F
Sbjct: 1073 EDGLEITKQKHLQD--FPFLAHNF-----WSVVEEL------------------NGSDEF 1107
Query: 484 IFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKA-CPQPLISTFQPDAHFGSISENLADS 542
+ D W + A KKYRK K C P +S F P + +GS SE A +
Sbjct: 1108 ------NRVKSDKAGDW---NRHAIKKYRKTGKLDCVDPALSLFPPGSCYGSTSETFAMA 1158
Query: 543 VVKYTKGRTD-----ASHVDK------FYDMIFYKNLLSLANPGENVGVLAAQSIGEPST 591
+ Y K D V+K F ++ K + S+ PGE+VG++A QSIGEPST
Sbjct: 1159 LKLYQKDNPDQILKEKGKVEKGISKKDFARVMNLKYMRSVVEPGESVGIVAGQSIGEPST 1218
Query: 592 QMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAK 651
QMTLNTFH AG NVTLGIPRLREI+M A+ I TP+M ++ EK AK
Sbjct: 1219 QMTLNTFHLAGHSAKNVTLGIPRLREIVMTASNQILTPTMTSVLRKEL--TEKDGRIFAK 1276
Query: 652 SMTRITMADVLEKVKIKEWLEISPEPHMN--YQMKFCFIPAHMYRDKTSVKPSKIIDHFE 709
+++++T+A+V++ +++ E + M Y ++ F P Y ++ +++ I +
Sbjct: 1277 AISKLTIAEVVDTLRVHERVSSGSSHGMAKIYDLEIDFFPPEEYTEEYAIQIEDIFKTLQ 1336
Query: 710 RKFLKELEVAIAKRAAQGLKNMNIEQSRDQM---EDDVEDDEG---EGAEGAGAALGRVD 763
KF+ L K LK E+S + D+ G E G D
Sbjct: 1337 HKFVPRL----IKLTRAELKKRTDEKSLSAFSAAQPDIGISTGVVEEPTRRFGHEARDAD 1392
Query: 764 VSSDEERDEEDAVQSHKKVNQEEDNDFEEPED--------EERMSEREEDDNTSNIGERF 815
D+E D++DA ++ +N +E P+D +E S+ +E+ + ++ G
Sbjct: 1393 ADDDDEEDQDDAKRAMSHMNHSNQVSYEAPDDGEEDIIRGQEPDSDSDEETDGNHHGSML 1452
Query: 816 KIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC-----------KLLFLP-------- 856
++ + S + + ++ + K+ + K C KLL LP
Sbjct: 1453 RLRIKQSEDT----ITGKYAEITKFKFSLKKGKSCHIQLRYDISTPKLLLLPLVEDAART 1508
Query: 857 ------------SNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYG 904
S + ++E+ + TDG+N+ + +Y+ + + LY N I M YG
Sbjct: 1509 SVIQFIKGLGACSYIEADRENPAHIVTDGVNLLAMREYQDFVYPHSLYTNSIADMLVMYG 1568
Query: 905 IEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNG-IRLNPSFIQKM 963
+EAA IIRE+ VF + I VD RHL+L+ D MTH+G++ A NR G ++ + S KM
Sbjct: 1569 VEAARACIIREMAAVFDGHSISVDNRHLNLIGDVMTHAGSFRAFNRMGLVKDSTSPFMKM 1628
Query: 964 TFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+FE + +R A ++ D+L PS+R+++G+ GTG F +
Sbjct: 1629 SFETTVGFLRDAVLERDCDNLNGPSSRIVMGRVGTVGTGAFDV 1671
>gi|325090322|gb|EGC43632.1| RNA polymerase I largest subunit [Ajellomyces capsulatus H88]
Length = 1697
Score = 527 bits (1357), Expect = e-146, Method: Compositional matrix adjust.
Identities = 371/1081 (34%), Positives = 552/1081 (51%), Gaps = 138/1081 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+ EA L + QYL G PL GLIQDH+ G + RDTF + +Y L+Y L
Sbjct: 663 RVEAMQLADTDHQYLSATAGKPLRGLIQDHISMGTWFTSRDTFFDKDDYYQLLYNCLRPE 722
Query: 73 NTEIRT-----LPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
N+ T + P I +P LWTGKQV+ST+++N+TP+ +G L+G K +
Sbjct: 723 NSHTVTDKILLMKPAILRPRKLWTGKQVISTIMMNITPER----FYGLNLTG---KSRTP 775
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
++G + V R GELL GILD Q G + GL+H+V + +G A LL L
Sbjct: 776 GDRWG--EGSEEGQVIFRDGELLCGILDSAQLGPSPGGLIHSVHEIYGHVVAGKLLGVLG 833
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL---PLDTDPE 244
+L T +L FT G+ D+ + ++ + R K + +A +G A + L + +
Sbjct: 834 RLLTKFLHMRAFTCGIDDLRLTKKGNEDRRKKLQEAEHIGRHVALKYVTLDQTKFEDEEA 893
Query: 245 IISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESG 304
+ +L++A + +A +D S ++++I CLP GL +PFP N +Q M SG
Sbjct: 894 ELKRRLEDALRD-DEKQAGLDAVLNSQAADISSDITAACLPVGLEKPFPWNQMQTMTTSG 952
Query: 305 AKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQP 364
AKGS VN ISC LGQ LEG+R +M+SG+TLPSF P++ + A GFV GRF+TGI+P
Sbjct: 953 AKGSVVNANLISCNLGQQVLEGRRVPVMISGKTLPSFRPFDTNLMASGFVSGRFLTGIKP 1012
Query: 365 QEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRD-SDLSLIQVLYG 423
QE++FH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL YD +VR+ +D S++Q LYG
Sbjct: 1013 QEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKAEYDNSVRETTDGSVMQFLYG 1072
Query: 424 EDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNF 483
EDGL++TK+++L D F FL N + V+ L +G F
Sbjct: 1073 EDGLEITKQKHLQD--FPFLAHNF-----WSVVEEL------------------NGSDEF 1107
Query: 484 IFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKA-CPQPLISTFQPDAHFGSISENLADS 542
+ D W + A KKYRK K C P +S F P + +GS SE A +
Sbjct: 1108 ------NRVKSDKAGDW---NRHAIKKYRKTGKLDCVDPALSLFPPGSCYGSTSETFAMA 1158
Query: 543 VVKYTKGRTD-----ASHVDK------FYDMIFYKNLLSLANPGENVGVLAAQSIGEPST 591
+ Y K D V+K F ++ K + S+ PGE+VG++A QSIGEPST
Sbjct: 1159 LKLYQKDNPDQILKEKGKVEKGISKKDFARVMNLKYMRSVVEPGESVGIVAGQSIGEPST 1218
Query: 592 QMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAK 651
QMTLNTFH AG NVTLGIPRLREI+M A+ I TP+M ++ EK AK
Sbjct: 1219 QMTLNTFHLAGHSAKNVTLGIPRLREIVMTASNQILTPTMTSVLRKEL--TEKDGRIFAK 1276
Query: 652 SMTRITMADVLEKVKIKEWLEISPEPHMN--YQMKFCFIPAHMYRDKTSVKPSKIIDHFE 709
+++++T+A+V++ +++ E + M Y ++ F P Y ++ +++ I +
Sbjct: 1277 AISKLTIAEVVDTLRVHERVSSGSSHGMAKIYDLEIDFFPPEEYTEEYAIQIEDIFKTLQ 1336
Query: 710 RKFLKEL----EVAIAKR----------AAQ---GLKNMNIEQS---------------- 736
KF+ L + KR AAQ G+ +E+
Sbjct: 1337 HKFVPRLIKLTRAELKKRTDEKSLSAFSAAQPDIGISTGVVEEPTRRFGHEARDADADDD 1396
Query: 737 -----------------RDQMEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSH 779
+Q+ + DD GE G D SDEE D H
Sbjct: 1397 DEEDQDDAKRAMSHMNHSNQVSYEAPDD-GEEDIIRGQDSQEPDSDSDEETDG----NHH 1451
Query: 780 KKVNQEEDNDFEEPE---DEERM--SEREEDDNTSNIGE--RFKIEFRDSTNVFVK---D 829
+ ED D ++ + D E++ S++ ED T E +FK + + ++ D
Sbjct: 1452 GEHAATEDVDMQDADTGSDSEKLQKSKQSEDTITGKYAEITKFKFSLKKGKSCHIQLRYD 1511
Query: 830 VVNQHNIVHKYSYDKKNH---MWCKLLFLPSNLFEEKESKHLLKTDGINVNFISQYRHLL 886
+ ++ D + K L S + ++E+ + TDG+N+ + +Y+ +
Sbjct: 1512 ISTPKLLLLPLVEDAARTSVIQFIKGLGACSYIEADRENPAHIVTDGVNLLAMREYQDFV 1571
Query: 887 DLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYV 946
+ LY N I M YG+EAA IIRE+ VF + I VD RHL+L+ D MTH+G++
Sbjct: 1572 YPHSLYTNSIADMLVMYGVEAARACIIREMAAVFDGHSISVDNRHLNLIGDVMTHAGSFR 1631
Query: 947 AMNRNG-IRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQ 1005
A NR G ++ + S KM+FE + +R A ++ D+L PS+R+++G+ GTG F
Sbjct: 1632 AFNRMGLVKDSTSPFMKMSFETTVGFLRDAVLERDCDNLNGPSSRIVMGRVGTVGTGAFD 1691
Query: 1006 L 1006
+
Sbjct: 1692 V 1692
>gi|225560308|gb|EEH08590.1| RNA polymerase I largest subunit [Ajellomyces capsulatus G186AR]
Length = 1697
Score = 527 bits (1357), Expect = e-146, Method: Compositional matrix adjust.
Identities = 369/1083 (34%), Positives = 559/1083 (51%), Gaps = 142/1083 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+ EA L + QYL G PL GLIQDH+ G + RDTF + +Y L+Y L
Sbjct: 663 RVEAMQLADTDHQYLSATAGKPLRGLIQDHISMGTWFTSRDTFFDKDDYYQLLYNCLRPE 722
Query: 73 NTEIRT-----LPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
N+ T + P I +P LWTGKQV+ST+++N+TP+ +G L+G K +
Sbjct: 723 NSHTVTDKILLMKPAILRPRKLWTGKQVISTIMMNITPER----FYGLNLTG---KSRTP 775
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
++G + V R GELL GILD Q G + GL+H+V + +G A LL L
Sbjct: 776 GDRWG--EGSEEGQVIFRDGELLCGILDSAQLGPSPGGLIHSVHEIYGHVVAGKLLGVLG 833
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL---PLDTDPE 244
+L T +L FT G+ D+ + ++ + R K + +A +G A + L + +
Sbjct: 834 RLLTKFLHMRAFTCGIDDLRLTKKGNEDRRKKLQEAEHIGRHVALKYVTLDQTKFEDEEA 893
Query: 245 IISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESG 304
+ +L++A + +A +D S ++++I CLP GL +PFP N +Q M SG
Sbjct: 894 ELKRRLEDALRD-DEKQAGLDAVLNSQAADISSDITAACLPVGLEKPFPWNQMQTMTTSG 952
Query: 305 AKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQP 364
AKGS VN ISC LGQ LEG+R +M+SG+TLPSF P++ + A GFV GRF+TGI+P
Sbjct: 953 AKGSVVNANLISCNLGQQVLEGRRVPVMISGKTLPSFRPFDTNLMASGFVSGRFLTGIKP 1012
Query: 365 QEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDS-DLSLIQVLYG 423
QE++FH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL YD +VR++ D S++Q LYG
Sbjct: 1013 QEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKAEYDNSVRETADGSVMQFLYG 1072
Query: 424 EDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNF 483
EDGL++TK+++L D F FL N + V+ L +G F
Sbjct: 1073 EDGLEITKQKHLQD--FPFLAHNF-----WSVVEEL------------------NGSDEF 1107
Query: 484 IFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKA-CPQPLISTFQPDAHFGSISENLADS 542
+ D W + A KKYRK K C P +S F P + +GS SE A +
Sbjct: 1108 ------NRVKSDKAGDW---NRHAIKKYRKTGKLDCVDPALSLFPPGSCYGSTSETFAMA 1158
Query: 543 VVKYTKGRTD-----ASHVDK------FYDMIFYKNLLSLANPGENVGVLAAQSIGEPST 591
+ Y K D V+K F ++ K + S+ PGE+VG++A QSIGEPST
Sbjct: 1159 LKLYQKDNPDQILKEKGKVEKGISKKDFARVMNLKYMRSVVEPGESVGIVAGQSIGEPST 1218
Query: 592 QMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAK 651
QMTLNTFH AG NVTLGIPRLREI+M A+ I TP+M ++ EK AK
Sbjct: 1219 QMTLNTFHLAGHSAKNVTLGIPRLREIVMTASNQILTPTMTGVLRKEL--TEKDGRIFAK 1276
Query: 652 SMTRITMADVLEKVKIKEWLEISPEPHMN--YQMKFCFIPAHMYRDKTSVKPSKIIDHFE 709
+++++T+A+V++ +++ E + M Y ++ F P Y ++ +++ I+ +
Sbjct: 1277 AISKLTIAEVVDTLRVHERVSSGSSHGMAKIYDLEIDFFPPEEYTEEYAIQIEDILKTLQ 1336
Query: 710 RKFLKEL----EVAIAKR------AAQGLKNMNIEQSRDQMEDDVE-------------- 745
KF+ L + KR +A +I S +E+
Sbjct: 1337 HKFVPRLIKLTRAELKKRTDEKSLSAFSAAQPDIGTSTGVVEEPTRRFGHEARDADADDD 1396
Query: 746 -DDEGEGAEGAGAALGRVDVSSDEERD--EEDAVQSHKKVNQEEDNDFEEPEDEERMSER 802
+++ + A+ A + + R + S E D EED ++ +QE D+D +E D E
Sbjct: 1397 DEEDQDDAKRAMSHMNRSNQVSYEAPDDGEEDIIRGQD--SQEPDSDSDEETDGNHHGEH 1454
Query: 803 E-------EDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC----- 850
+D +T + E+ + + + S + + ++ + K+ + K C
Sbjct: 1455 AATEDVDMQDADTGSDSEKLQ-KSKQSEDT----ITGKYAEITKFKFSLKKGKSCHIQLR 1509
Query: 851 ------KLLFLP--------------------SNLFEEKESKHLLKTDGINVNFISQYRH 884
KLL LP S + ++E+ + TDG+N+ + +Y+
Sbjct: 1510 YDISTPKLLLLPLVEDAARTSVIQFIKGLGACSYIEADRENPAHIVTDGVNLLAMREYQD 1569
Query: 885 LLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGT 944
+ + LY N I M YG+EAA IIRE+ VF + I VD RHL+L+ D MTH+G+
Sbjct: 1570 FVYPHSLYTNSIADMLVMYGVEAARACIIREMAAVFDGHSISVDNRHLNLIGDVMTHAGS 1629
Query: 945 YVAMNRNG-IRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGL 1003
+ A NR G ++ + S KM+FE + +R A ++ D+L PS+R+++G+ GTG
Sbjct: 1630 FRAFNRMGLVKDSTSPFMKMSFETTVGFLRDAVLERDCDNLNGPSSRIVMGRVGTVGTGA 1689
Query: 1004 FQL 1006
F +
Sbjct: 1690 FDV 1692
>gi|407928328|gb|EKG21187.1| RNA polymerase alpha subunit [Macrophomina phaseolina MS6]
Length = 1711
Score = 526 bits (1356), Expect = e-146, Method: Compositional matrix adjust.
Identities = 367/1104 (33%), Positives = 544/1104 (49%), Gaps = 160/1104 (14%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
+ +AEA+ + + QYL G+PL GLIQDH+ L RD+F TR EY +VY A
Sbjct: 657 NELARAEAATIADADHQYLSATAGNPLRGLIQDHISVSVALCSRDSFFTREEYNQMVYAA 716
Query: 69 L-----CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDK 123
+ ++ + T+PP IWKP PLWTGKQ+++T++ N+ P + HG L + K
Sbjct: 717 VRPEDNHTVSARLLTVPPAIWKPRPLWTGKQLITTLLKNIKP-----VTHGPLT--MTSK 769
Query: 124 KQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLL 183
Q + ++G + V + GELL GI+DKKQ G G V+AV++ +G LL
Sbjct: 770 SQTPADRWG--QGSEEGTVIFKDGELLMGIMDKKQIGPAAGGFVNAVYEAYGHTACGRLL 827
Query: 184 SCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL---PLD 240
S L ++ T L + GV D+++ E + R + ++ A +G E A + L L
Sbjct: 828 SALGRMLTKLLHMRAHSCGVDDLILTAEGEEARRQALHAAETVGLEVASKYVSLDNKKLR 887
Query: 241 TD-PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQF 299
+D PE++ + E + +D+ KV++ + CLP+GL++PFP N +Q
Sbjct: 888 SDNPELL--RRLETVLRDDSKQHGLDQLTNVASGKVSSAVTGACLPDGLVKPFPHNRMQL 945
Query: 300 MVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFM 359
M +GAKGS VN ISC LGQ LEG+R +MVSG+TLP F P+E S RAGG+V RF+
Sbjct: 946 MTSTGAKGSQVNANLISCNLGQQVLEGRRVPVMVSGKTLPCFKPFESSVRAGGYVVDRFL 1005
Query: 360 TGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQ 419
TGI+PQE++FH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL VHYD TVRDSD S++Q
Sbjct: 1006 TGIRPQEYYFHTMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKVHYDTTVRDSDGSMVQ 1065
Query: 420 VLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSG 479
LYGEDGLD T+ +YL D F F +N K I + L
Sbjct: 1066 FLYGEDGLDPTRVRYLND--FRFSAENYKSIVQSMDVQGQL------------------- 1104
Query: 480 KPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFK-ACPQPLISTFQPDAHFGSISEN 538
+K T++ +W + A +KYRK C P IS + P + SE
Sbjct: 1105 ----------SKLTLEEANEW---NKTAVRKYRKTQDLGCMDPAISQWNP-GRYAVTSEA 1150
Query: 539 LADSVVKYTKGRTDASHVDK------------FYDMIFYKNLLSLANPGENVGVLAAQSI 586
+ KY + D DK F ++ K L SL PGE VGV+A QSI
Sbjct: 1151 FYSAKKKYVEDNPDKLIKDKKQNVENGLSKKTFNAVMDLKYLKSLIEPGEAVGVVAGQSI 1210
Query: 587 GEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKA 646
GEPSTQMTLNTFH AG NVTLGIPRLREI+M A+ +I TPSM + ++ + + A
Sbjct: 1211 GEPSTQMTLNTFHLAGHSAKNVTLGIPRLREIVMTASASISTPSMTLYMNEEIDR--EGA 1268
Query: 647 NRLAKSMTRITMADVLEKVKIKEWLEISPEPHMN--YQMKFCFIPAHMYRDKTSVKPSKI 704
R AK ++R+++A++++ V + E L Y+++ F PA Y + ++ +
Sbjct: 1269 ERFAKGISRLSLAEIVDNVSVSETLGKGAAYAQAKIYRIRLNFFPAEEYCKEYAISVKDV 1328
Query: 705 IDHFERKFLKELEVAIA---KRAAQ----------------GLKNMNIEQSRDQMEDDVE 745
E KFL L I K+ Q G + ++Q + + D E
Sbjct: 1329 ERAIETKFLNRLRKLIRDLLKKKGQEKTLKAGAKSDAIPEIGKSSRTVKQHQARQGDRDE 1388
Query: 746 DDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEER------- 798
DEG+ G + +++ ++EDA +K N+ +E P+DEE
Sbjct: 1389 ADEGD-----GVIDDGDEEDDEDDAEDEDATNDKQKANRAMQASYENPDDEEEAIAAANR 1443
Query: 799 --------MSEREEDDNTSNIGERFKIEFRDSTNVFV--------------KDVVNQHNI 836
M E E + G+ + + + ++ +
Sbjct: 1444 QRDSTPDPMEEDETYGGSPKPGQSSDDDDDSESESESRRRRARKVAAEEREQRIMAKIED 1503
Query: 837 VHKYSYDKKNHMWCKLLF---------LPSNLFEEKESKHLLK-TDGINVNFISQYRHLL 886
V + +D WC++ F L +L E +++ GI + ++ +
Sbjct: 1504 VTSFKFDDAKGSWCEVTFEYDASTAKLLMLHLVESALKDAVIQHVPGIK-SCMATTEKID 1562
Query: 887 DLNKLYV----NDIHYMASTYGIEAANRVIIREVKNVFAVYGIE---------------- 926
D KL V + + + + N++ ++ + +YG+E
Sbjct: 1563 DEEKLVVLVDGSALLALRDYQDVHNPNKMYTNDIAQILRLYGVEAARASIVREMSAVFGG 1622
Query: 927 ----VDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGRED 982
VD RHL+L+ D MT G Y A NR G++ N S KM+FE + ++ A M+ D
Sbjct: 1623 HGISVDNRHLNLIGDVMTRGGGYTAFNRMGLKSNVSPFMKMSFETTVGFLKDAVMEEDVD 1682
Query: 983 SLRAPSARVMLGQECRQGTGLFQL 1006
+L PSAR+++G+ GTG F +
Sbjct: 1683 TLDNPSARIVVGKINGVGTGSFDV 1706
>gi|294935326|ref|XP_002781387.1| DNA-directed RNA polymerase I largest subunit, putative [Perkinsus
marinus ATCC 50983]
gi|239891968|gb|EER13182.1| DNA-directed RNA polymerase I largest subunit, putative [Perkinsus
marinus ATCC 50983]
Length = 1662
Score = 526 bits (1356), Expect = e-146, Method: Compositional matrix adjust.
Identities = 367/1110 (33%), Positives = 563/1110 (50%), Gaps = 142/1110 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL--C 70
+AEA ++ + QYL P G PL GLIQDHV+SG L+ RD F+ + E NL+Y A+
Sbjct: 512 RAEAIYIASADHQYLGPTSGKPLRGLIQDHVVSGVFLTARDHFMRKTEVQNLIYTAMRAA 571
Query: 71 ILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLT-----PKDKVIIRH----------GE 115
I I PP I KP LWTGKQV++ + +L DK ++ G+
Sbjct: 572 IEGDTIVMEPPVIVKPQTLWTGKQVITIFLKSLIKFATHSTDKAVVNGFNHHAKAKTPGD 631
Query: 116 LLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHG 175
L G+ D + + VTIR EL+ G+LDK FG+T GL H ++ G
Sbjct: 632 LWGGVSDGNK------------EEQMVTIRDTELIEGVLDKASFGATANGLTHLFYELCG 679
Query: 176 AEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNAL 235
+ A LL+ + ++ T+YLQ GFT +RD+L+ E D R +++ KAR E + N +
Sbjct: 680 PKAAGLLLTGMGRMLTLYLQYHGFTCAMRDLLITPEGDEARLQMLRKAR----EDSWNKI 735
Query: 236 -GLPLDTDPE--------IISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNN----INQV 282
+ PE + ++ + YA+ P+ + + + + + + + +
Sbjct: 736 RDWVKENSPEEANVKTLHKLQKEIGKLYAADPKVQHPMFEELEETMLSTNRDYWGKLIDI 795
Query: 283 CLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFL 342
P+G + PFP N MV +GAKGS VN I +LGQ ELEG R M + R LPSF
Sbjct: 796 LFPKGQVSPFPDNCFSAMVSTGAKGSKVNHSMIDAMLGQQELEGHRAPRMRNQRFLPSFA 855
Query: 343 PYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGL 402
Y++ PRAGG++ RF+TG +PQEFF+HCMAGREGL+DTAVKT+RSGYLQRCLVK+LEG+
Sbjct: 856 QYDIGPRAGGYITDRFLTGYRPQEFFYHCMAGREGLVDTAVKTARSGYLQRCLVKNLEGI 915
Query: 403 TVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKK 462
T++YD TVRD+D S+++ LYGEDG+DVTK +L +QF L++N ++ + K
Sbjct: 916 TINYDYTVRDTDSSIVEFLYGEDGMDVTKVSHL--EQFDVLDENSAFMAKSAAVAKEEAK 973
Query: 463 HPLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKAR-------KKYRKKF 515
+L L K + KP S RTK + + +L D+ + K
Sbjct: 974 MESNLPALYR---KWAEKPQ---SGRRTKDLVKGVNASDKLRDEEKEHIAFVVKDTHTNG 1027
Query: 516 KACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASH----VDKFYDMIFYKNLLSL 571
P P+ S P G++SE +++ +Y R + ++F D+I +K +L
Sbjct: 1028 GKAP-PMNSMLPPWRFTGAMSEREENALTEYLSHRPEELEKKMPTEEFRDVIMHKYARTL 1086
Query: 572 ANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSM 631
A+PGE VG LAAQ +GEPSTQMTLNTFH AG G +NVTLGIPRLREI+ A++ ++TP+M
Sbjct: 1087 ADPGEAVGTLAAQGMGEPSTQMTLNTFHLAGHGGVNVTLGIPRLREIVQTASRHLETPAM 1146
Query: 632 EIPFLPDMPKLEKKA--------------NRLAKSMTRITMADVLEKVKIKEWL---EIS 674
E P L + E+ + + MTR+++ DV+ + E + + S
Sbjct: 1147 EFPVLGGLKVAEELKVMTDGVTSISASIHHSVQGKMTRVSLKDVVVATHVLESVTAAQPS 1206
Query: 675 PEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHF------------ERKFLK--ELEVAI 720
E Y++ + M + I HF +KF+K E I
Sbjct: 1207 GETMRTYELVVELVDPVMIQKAYPSLSQTAIAHFLDHDFRDKLNSNLKKFIKISESTSTI 1266
Query: 721 AKRAAQ---GLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRVDVSSDEERD------ 771
R AQ G ++ E D+ + + D+G+ ++ L + ++DEER+
Sbjct: 1267 TSRKAQQEEGAADVFNEIPEDENNAE-QKDQGDESQNVTRTLAQRARATDEEREAELDRM 1325
Query: 772 ----EEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNTSNIGERFKIEF-----RDS 822
E+D + V Q + E ED E + E + G+ E+ ++S
Sbjct: 1326 EAASEDDVGEEWYDVLQVVLSQDEAEEDNETPAAEEGTQGPALGGQTTAEEYQVSKTKNS 1385
Query: 823 TNVFV---------KDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNLFEE----------- 862
T V K V+ + +K + + L S+L+ +
Sbjct: 1386 TEVIFNKSGRLYGPKFVLRSRPLELSQGISRKILILEAVADLCSDLYIQQTPGITSVHVV 1445
Query: 863 -----KESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVK 917
+ K ++T+G+N++ I+ +D +++ NDI + YG+EAA I++EV
Sbjct: 1446 EPRPGQSDKVTIETEGVNLD-IAWGLDGIDHDRIVTNDIGLILDRYGVEAARAAIVQEVL 1504
Query: 918 NVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASM 977
VF YGI VDPRHL L++DYMTH G + +R G+ + S +MTFE + + +A
Sbjct: 1505 RVFGHYGIGVDPRHLMLISDYMTHHGGFRPFSRRGMEAHASPWLQMTFETSVNFLTKACN 1564
Query: 978 QGREDSLRAPSARVMLGQECRQGTGLFQLR 1007
+ D+L++P+ +++G++ GTG F LR
Sbjct: 1565 NAQYDTLKSPAGSIIVGKQACVGTGCFDLR 1594
>gi|402222556|gb|EJU02622.1| subunit of DNA dependent RNA-polymerase [Dacryopinax sp. DJM-731 SS1]
Length = 1749
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 315/828 (38%), Positives = 465/828 (56%), Gaps = 109/828 (13%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
+H +AEA + N +QYLVPK G PL GLIQDHV+S ++ +DTF TR EY ++Y A
Sbjct: 695 NHIARAEAMSIANTDNQYLVPKTGEPLRGLIQDHVVSAFFMTAQDTFFTREEYQQIIYGA 754
Query: 69 LCILNTE-----IRTLPPTIWKPMPLWTGKQVLSTVIINLTPK--DKVIIRHGELLSGIL 121
L N + T+PPTIWKP PLWTGKQ++ST++ N+TP + + ++ + G +
Sbjct: 755 LRPENNYTGGGIVLTVPPTIWKPRPLWTGKQIISTILKNITPARAEGLNLQAKAKIGGNM 814
Query: 122 DKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAIS 181
+K ++ G+V + GEL++G++DK Q G++ +G+ H+V++ +G E A
Sbjct: 815 WRK---DSEEGVV--------LVMDGELITGVIDKAQIGASAHGITHSVYELYGPETAGK 863
Query: 182 LLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDT 241
L+S +LFT +LQ FT + D+L+ E + KR K++ + LG +AA +
Sbjct: 864 LISIWGRLFTKFLQHRAFTCRMDDLLLSPEGEEKRKKLMESGQSLGLKAAVSNFPDLAQL 923
Query: 242 DPEIISSQLQEAYASIPQFR---AQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQ 298
+ + Q+++ +SI + A +D Y+ L+++T I + CLP GL+ PFP N++Q
Sbjct: 924 ETREAAEQVKDRISSILRDEVKMAGLDMTYRGELNQLTVEIEKACLPGGLVRPFPVNHMQ 983
Query: 299 FMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRF 358
M+ +GAKG VN QIS LGQ +LEG+RP +M+SG+TLPSF P+E S AGG+V RF
Sbjct: 984 AMIMAGAKGKPVNARQISSSLGQQDLEGRRPPVMISGKTLPSFQPFETSAEAGGYVGSRF 1043
Query: 359 MTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLI 418
+TG++PQEF+FHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEG VHYD TVR SD S++
Sbjct: 1044 LTGLRPQEFYFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGARVHYDHTVRSSDNSVL 1103
Query: 419 QVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSS 478
Q YG D LDV K+ LT QF F N++ SY + N
Sbjct: 1104 QFQYGGDALDVIKQAQLT--QFDFAVQNLE---SY--VNN-------------------- 1136
Query: 479 GKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACP---QPLISTFQPDAHFGSI 535
F+P + W +LD + + KK P P+++ + P G+
Sbjct: 1137 ------FNPK---------DVWNKLDVETALSHMKKALKKPGKHTPVLAKYSPSRFLGAT 1181
Query: 536 SENLADSVVKY-------------TKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLA 582
SE A V Y +G++ F ++ + + SL PGE VG+LA
Sbjct: 1182 SEAFAREVETYIEKNPRGLIKKKKAEGKSGMPAA-AFRSLMNVRYMRSLVEPGEAVGLLA 1240
Query: 583 AQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPF-LPDMP- 640
AQ IGEPSTQMTLNTFHFAG G NVTLGIPRLREI+M A+ KTP+M I D P
Sbjct: 1241 AQCIGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTASTKPKTPTMTIVMKASDSPT 1300
Query: 641 -KLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEP-----HMNYQMKFCFIPAHMYR 694
++ KA +L ++++R+T+AD++ K+ +KE +E + P H +Y + F Y+
Sbjct: 1301 EQVAAKAQKLCQAISRVTLADLVHKITVKERIETANVPGSLSRHKSYTVTLDFFSKEEYK 1360
Query: 695 DKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEG 754
++ +V P +++ F L+ IA LK +N D +G+ A G
Sbjct: 1361 EEHNVSPRQVLAALGTNFALVLKREIAAE----LKKIN------------ADFKGQ-ASG 1403
Query: 755 AGAALGRVD----VSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEER 798
G VD D++ D+ + + + +N++ +D + D+E+
Sbjct: 1404 IGKGKAPVDDDAPAGGDQDEDDAEPRPAARNINEDAMSDGDGDNDDEK 1451
Score = 100 bits (248), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 82/139 (58%), Gaps = 1/139 (0%)
Query: 869 LKTDGINVNFISQ-YRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 927
L T+G N + Q +D + +Y NDI+ + YG+EAA I++E++ VF+ YGIEV
Sbjct: 1606 LMTNGCNFPALWQILDDSVDPDLIYSNDINAVLQHYGVEAARFAIVQEIRAVFSTYGIEV 1665
Query: 928 DPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAP 987
+ RHL L+ADYMT G Y NR+GI + S + K ++E + A++ G D L +P
Sbjct: 1666 NFRHLRLIADYMTFDGGYKPFNRSGIATSSSPLLKASYETTASFLSDATLYGDFDDLSSP 1725
Query: 988 SARVMLGQECRQGTGLFQL 1006
S +++G+ GTG F +
Sbjct: 1726 SGTIVIGKPSNIGTGGFDI 1744
>gi|426198573|gb|EKV48499.1| hypothetical protein AGABI2DRAFT_220361 [Agaricus bisporus var.
bisporus H97]
Length = 1750
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 304/748 (40%), Positives = 426/748 (56%), Gaps = 80/748 (10%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
+H +AEA + N +QYLVP G+PL GLIQDHV++G ++ +D+F TR +Y L+Y A
Sbjct: 697 NHVARAEAMMIANTDNQYLVPTSGNPLRGLIQDHVVAGVWMTKQDSFFTREDYFQLIYGA 756
Query: 69 L-------CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGI- 120
L C + TLPPTIWKP PLWTGKQ++ST++ NLTP G+
Sbjct: 757 LRPEDEDYCTTG-RLETLPPTIWKPKPLWTGKQIISTILKNLTPPK---------FKGLN 806
Query: 121 LDKKQFGSTQYGLVHAVW-----DTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHG 175
LD K + +W + V GELL G+LDK FG++ YGLVH+V++ +G
Sbjct: 807 LDAKT------KVPGFLWGKDSKEDKVVFMDGELLCGVLDKAAFGASDYGLVHSVYELYG 860
Query: 176 AEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNAL 235
A+ A LL L++LFT +LQ FT + D+++ E DRKR +++ K R GTEAA
Sbjct: 861 ADVAGKLLGILSRLFTKFLQHRAFTCRMDDLILTPEGDRKRVELLEKGRNWGTEAAIENF 920
Query: 236 GLPLDTDPEIISSQLQEAYASI---PQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPF 292
DT PE I L+ ++ + A +D K+ L K+T++++ CLP GL+ F
Sbjct: 921 PSLKDTAPEEIPVALEALLLNVLRDDKKMAGLDMTVKTKLSKLTSSVSDACLPHGLLRKF 980
Query: 293 PANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGG 352
P NN+Q M +SGAKGS VN QISC LGQ ELEG+R +MVSG+TLPSF P+E AGG
Sbjct: 981 PHNNMQTMTQSGAKGSAVNARQISCGLGQQELEGRRVPVMVSGKTLPSFRPFETKAIAGG 1040
Query: 353 FVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRD 412
+V RF+TGI+PQEF+FHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEG+ VHYD TVR
Sbjct: 1041 YVASRFLTGIKPQEFYFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGIHVHYDHTVRG 1100
Query: 413 SDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLL 472
SD S+ Q YG D LDVTK+++L QF F+ N + + +++ P+ +A
Sbjct: 1101 SDNSIYQFAYGGDALDVTKQKHLY--QFDFIAQNEESL--------VMRLQPMRVA---- 1146
Query: 473 LTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHF 532
+ + + +L++ + R K+ P ++ + P
Sbjct: 1147 ---------DAVDDSTAISYMKKVLKRSTDRKRRGEPSKRDKY----DPALTLYSPSRFL 1193
Query: 533 GSISENLADSVVKYTKGRTDASHVDKFYD----------MIFY--------KNLLSLANP 574
G+ SE A +V +Y K + K D M+ Y K + SL P
Sbjct: 1194 GATSEQFAVAVDQYMKSNPNDLLTKKGDDEEALRRRHEKMLAYNFKMIMNVKYMRSLVEP 1253
Query: 575 GENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIP 634
GE VG+LA+Q +GEPSTQMTLNTFHFAG G NVTLGIPRLREI+M A++ KTPSM +
Sbjct: 1254 GEAVGLLASQGVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTASQKPKTPSMSML 1313
Query: 635 FLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMN-YQMKFCFIPAHMY 693
+ + E + K +R+ ++ ++E V ++E ++ + + F P Y
Sbjct: 1314 IRESVSQAE--IDLFCKRASRVALSQLVEDVVVREISKVEGGARRTVFSIDINFFPEEEY 1371
Query: 694 RDKTSVKPSKIIDHFERKFLKELEVAIA 721
+ + P +++ F +F L+ IA
Sbjct: 1372 TSEYDLGPFDLLNAFSIRFPMILKKEIA 1399
Score = 105 bits (261), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 81/143 (56%), Gaps = 5/143 (3%)
Query: 869 LKTDGINVNFISQY-----RHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
L T+G N + ++ +L +++Y NDI+ + TYG+E A I+RE+ VF Y
Sbjct: 1604 LTTNGSNFRGMWKFAVQSGESILRDDEIYSNDIYAILMTYGVEMARAAILREMGGVFGAY 1663
Query: 924 GIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDS 983
I+VD RHL L+ADYMT G Y NR GI NPS + K ++E + A++ G D
Sbjct: 1664 NIQVDRRHLELIADYMTFEGGYKPFNRKGISANPSPLLKASYETTAAFLSDATLYGDFDD 1723
Query: 984 LRAPSARVMLGQECRQGTGLFQL 1006
L PS +++G+ GTG+F +
Sbjct: 1724 LSTPSGNIVIGRPNATGTGVFDV 1746
>gi|409079663|gb|EKM80024.1| hypothetical protein AGABI1DRAFT_57378 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1750
Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust.
Identities = 304/748 (40%), Positives = 426/748 (56%), Gaps = 80/748 (10%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
+H +AEA + N +QYLVP G+PL GLIQDHV++G ++ +D+F TR +Y L+Y A
Sbjct: 697 NHVARAEAMMIANTDNQYLVPTSGNPLRGLIQDHVVAGVWMTKQDSFFTREDYFQLIYGA 756
Query: 69 L-------CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGI- 120
L C + TLPPTIWKP PLWTGKQ++ST++ NLTP G+
Sbjct: 757 LRPEDEDYCTTG-RLETLPPTIWKPKPLWTGKQIISTILKNLTPPK---------FKGLN 806
Query: 121 LDKKQFGSTQYGLVHAVW-----DTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHG 175
LD K + +W + V GELL G+LDK FG++ YGLVH+V++ +G
Sbjct: 807 LDAKT------KVPGFLWGKDSKEDKVVFMDGELLCGVLDKAAFGASDYGLVHSVYELYG 860
Query: 176 AEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNAL 235
A+ A LL L++LFT +LQ FT + D+++ E DRKR +++ K R GTEAA
Sbjct: 861 ADVAGKLLGTLSRLFTKFLQHRAFTCRMDDLILTPEGDRKRVELLEKGRNWGTEAAIENF 920
Query: 236 GLPLDTDPEIISSQLQEAYASI---PQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPF 292
DT PE I L+ ++ + A +D K+ L K+T++++ CLP GL+ F
Sbjct: 921 PSLKDTAPEEIPVALEALLLNVLRDDKKMAGLDMTVKTKLSKLTSSVSDACLPHGLLRKF 980
Query: 293 PANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGG 352
P NN+Q M +SGAKGS VN QISC LGQ ELEG+R +MVSG+TLPSF P+E AGG
Sbjct: 981 PHNNMQTMTQSGAKGSAVNARQISCGLGQQELEGRRVPVMVSGKTLPSFRPFETKAIAGG 1040
Query: 353 FVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRD 412
+V RF+TGI+PQEF+FHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEG+ VHYD TVR
Sbjct: 1041 YVASRFLTGIKPQEFYFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGIHVHYDHTVRG 1100
Query: 413 SDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLL 472
SD S+ Q YG D LDVTK+++L QF F+ N + + +++ P+ +A
Sbjct: 1101 SDNSIYQFAYGGDALDVTKQKHLY--QFDFIAQNEESL--------VMRLQPMRVA---- 1146
Query: 473 LTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHF 532
+ + + +L++ + R K+ P ++ + P
Sbjct: 1147 ---------DAVDDSTAISYMKKVLKRSTDRKRRGEPSKRDKY----DPALTLYSPSRFL 1193
Query: 533 GSISENLADSVVKYTKGRTDASHVDKFYD----------MIFY--------KNLLSLANP 574
G+ SE A +V +Y K + K D M+ Y K + SL P
Sbjct: 1194 GATSEQFAVAVDQYMKSNPNDLLTKKGDDEEALRRRHEKMLAYNFKMIMNVKYMRSLVEP 1253
Query: 575 GENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIP 634
GE VG+LA+Q +GEPSTQMTLNTFHFAG G NVTLGIPRLREI+M A++ KTPSM +
Sbjct: 1254 GEAVGLLASQGVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTASQKPKTPSMSML 1313
Query: 635 FLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMN-YQMKFCFIPAHMY 693
+ + E + K +R+ ++ ++E V ++E ++ + + F P Y
Sbjct: 1314 VRESVSQAE--IDLFCKRASRVALSQLVEDVVVREISKVEGGARRTVFSIDINFFPEEEY 1371
Query: 694 RDKTSVKPSKIIDHFERKFLKELEVAIA 721
+ + P +++ F +F L+ IA
Sbjct: 1372 TSEYDLGPFDLLNAFSIRFPMILKKEIA 1399
Score = 105 bits (261), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 81/143 (56%), Gaps = 5/143 (3%)
Query: 869 LKTDGINVNFISQY-----RHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
L T+G N + ++ +L +++Y NDI+ + TYG+E A I+RE+ VF Y
Sbjct: 1604 LTTNGSNFRGMWKFAVQSGESILRDDEIYSNDIYAILMTYGVEMARAAILREMGGVFGAY 1663
Query: 924 GIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDS 983
I+VD RHL L+ADYMT G Y NR GI NPS + K ++E + A++ G D
Sbjct: 1664 NIQVDRRHLELIADYMTFEGGYKPFNRKGISANPSPLLKASYETTAAFLSDATLYGDFDD 1723
Query: 984 LRAPSARVMLGQECRQGTGLFQL 1006
L PS +++G+ GTG+F +
Sbjct: 1724 LSTPSGNIVIGRPNATGTGVFDV 1746
>gi|255941530|ref|XP_002561534.1| Pc16g12350 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211586157|emb|CAP93905.1| Pc16g12350 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1671
Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust.
Identities = 355/1091 (32%), Positives = 551/1091 (50%), Gaps = 151/1091 (13%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
+ +AEA L + QYLV G PL GLIQDH+ G ++ RD+F +Y L+Y
Sbjct: 634 NELAQAEARMLADADHQYLVATSGKPLRGLIQDHISMGTWVTCRDSFYDEEDYHQLLYSC 693
Query: 69 L-----CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDK 123
L I++ I+ + P + KP LWTGKQ+++T++ N+ P ++ G+ K
Sbjct: 694 LRPEHSHIVSDRIQLVEPAMRKPKCLWTGKQIITTILKNIQPPER---------GGLTLK 744
Query: 124 KQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLL 183
+ + + V + GE L GILDKKQ G T GL+ AV + +G A L+
Sbjct: 745 SKSSTPGERWGKGNEEDEVIFQDGEYLCGILDKKQLGPTAGGLIDAVHEVYGYSTAGKLI 804
Query: 184 SCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL---PLD 240
L +L T L GF+ G+ D+ + +E DR R + + A ++G E A + L P D
Sbjct: 805 GILGRLLTRVLNLRGFSCGIDDLRLTKEGDRIRKEKLATAPQMGREVALKYVTLDQVPGD 864
Query: 241 TDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFM 300
E+ + +L+E + ++ +D + K+++ I CLP GL +PFP N +Q M
Sbjct: 865 QTAEL-NRRLEEVLRDDDK-QSGLDSVSNARSAKLSSEITSACLPSGLAKPFPWNQMQSM 922
Query: 301 VESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMT 360
SGAKGS VN ISC LGQ LEG+R +M+SG+TLPSF +E P AGG+V GRF+T
Sbjct: 923 TISGAKGSGVNANLISCNLGQQVLEGRRVPLMISGKTLPSFKAFETHPMAGGYVSGRFLT 982
Query: 361 GIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRD-SDLSLIQ 419
GI+PQE++FH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL YD +VR+ SD S++Q
Sbjct: 983 GIKPQEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKAEYDSSVREASDGSVVQ 1042
Query: 420 VLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSG 479
LYGEDGLD+TK+ +L D F FL N I
Sbjct: 1043 FLYGEDGLDITKQVHLND--FDFLAQNHISISKQ-------------------------- 1074
Query: 480 KPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKA-CPQPLISTFQPDAHFGSISEN 538
+ + K + + W++ A K RK K P++S F P + GS SE
Sbjct: 1075 ----VQADDYHKLAKEDVTTWHK---DAMKAVRKTGKIDAVDPVLSHFPPGGNLGSTSEA 1127
Query: 539 LADSVVKYT---------------KGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAA 583
A + KY +G+ + +M + K+++ +PGE VG++A
Sbjct: 1128 FAQELKKYADVNKNKLIKDKKKNIEGKVTKKTFEALMNMKYMKSII---DPGEAVGIMAG 1184
Query: 584 QSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLE 643
QS+GEPSTQMTLNTFH AG NVTLGIPRLREI+M A+ I TP+M + ++ K
Sbjct: 1185 QSVGEPSTQMTLNTFHLAGHSAKNVTLGIPRLREIVMTASAKIMTPTMTLLLNEEISK-- 1242
Query: 644 KKANRLAKSMTRITMADVLEKVKIKEWL--EISPEPHMNYQMKFCFIPAHMYRDKTSVKP 701
+ + + AK+++++++A++++KV+++E + I Y ++ F P+ Y + +++
Sbjct: 1243 EDSEKFAKAISKLSIAELVDKVQVRERIGSGIGHSKAKIYDIEIDFFPSEEYTKEYAIET 1302
Query: 702 SKIIDHFERKFLKEL-EVAIAKRAAQGLKNMNIEQSRDQMEDDV------EDDEGEGAEG 754
++ E K + L + A+ + + ++ + Q E V E G +E
Sbjct: 1303 KDVLVALESKLIPRLVRLTKAELKKRNEEKKGVKGTTSQPEIGVSVGRIAEAPRGADSEA 1362
Query: 755 AGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNTSNIGER 814
A D D +R A + + NQ +EEP+D E+ R +D E
Sbjct: 1363 QPADDDNEDDEDDAKR----AASAQNRGNQV---SYEEPDDGEQDIIRRQDSPDEEEDED 1415
Query: 815 FK---------IEFRDS----------------TNVFVKDVVNQHNIVHKYSYDKKNHMW 849
++ +D + +DV+ + + K+ +D K
Sbjct: 1416 ESRKPAKATRDVQMKDGSDSDSEDDSDDETAQDSKAREEDVMGKFEEITKFKFDPKKGNT 1475
Query: 850 C-----------KLLFLP------------------SNLF----EEKESKHLLKTDGINV 876
C KLL LP + +F E K + T+G+N+
Sbjct: 1476 CTIQLQYDVETPKLLLLPLVEKALHLAVIQCIPGMGNCVFVEADEAKGDPANIVTEGVNL 1535
Query: 877 NFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVA 936
+ Y+ ++ + +Y N IH M + YG+EAA I+RE+ VF + I VD RHL+L+
Sbjct: 1536 LAMRDYQDIIKPHSIYTNSIHDMLNLYGVEAARGTIVREMDAVFKGHSISVDNRHLNLIG 1595
Query: 937 DYMTHSGTYVAMNRNG-IRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQ 995
D MT SG++ A +RNG ++ S + +FE + ++ ++ D+L++PS+R+++G+
Sbjct: 1596 DVMTQSGSFKAFSRNGLVKDASSAFARASFETTVGALKDVVLERGNDNLKSPSSRIVVGR 1655
Query: 996 ECRQGTGLFQL 1006
GTG F +
Sbjct: 1656 VGTVGTGSFDI 1666
>gi|392568044|gb|EIW61218.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Trametes versicolor FP-101664 SS1]
Length = 1739
Score = 523 bits (1347), Expect = e-145, Method: Compositional matrix adjust.
Identities = 329/846 (38%), Positives = 453/846 (53%), Gaps = 135/846 (15%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
+H +AEA F+ N +QYLVP G PL GLIQDHV++G ++ +D F TR EY L+Y A
Sbjct: 680 NHVARAEAYFIANTDNQYLVPTSGKPLRGLIQDHVVAGVWMTAQDAFFTREEYFQLLYGA 739
Query: 69 LCILNT------EIRTLPPTIWKPMPLWTGKQVLSTVIINLTPK--DKVIIRHGELLSGI 120
L + + TLPPTIWKP PLWTGKQ++STV+ N+TP D + + + G
Sbjct: 740 LRPEDDPEQHGGRLVTLPPTIWKPKPLWTGKQIISTVMKNITPPQFDGLNLHAAAKVPGH 799
Query: 121 LDKKQFGSTQYGLVHAVWDT-----HVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHG 175
L W T V GELLSGILDK FG++ YGLVH+V++ +G
Sbjct: 800 L----------------WGTDSQEDKVVFMDGELLSGILDKSAFGASDYGLVHSVYELYG 843
Query: 176 AEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNAL 235
A+ A LL L++LFT +LQ FT + D+ + + + +R +I K+ LGTE A
Sbjct: 844 ADVAGKLLGVLSRLFTKFLQHRAFTCRMDDLALTPDGNARRADLIAKSTNLGTEGAIENF 903
Query: 236 GL----PLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEP 291
+ P P ++ S L++ + A +D K L K+T +I +P GL+
Sbjct: 904 PVLKTTPEGERPAVLRSLLEDVLRDDSKM-AGLDVTVKGKLAKLTKSIADAVMPHGLLRQ 962
Query: 292 FPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAG 351
FP N++Q M SGAKGS VN QISC LGQ ELEG+R +MVSG+TLPSF P+E AG
Sbjct: 963 FPHNHMQAMTVSGAKGSAVNAQQISCALGQQELEGRRVPVMVSGKTLPSFKPFETKAIAG 1022
Query: 352 GFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVR 411
G+V RF+TG++PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEG+ VHYD TVR
Sbjct: 1023 GYVASRFLTGVKPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGVRVHYDNTVR 1082
Query: 412 DSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDN-IKWICSYKVILNLLKKHPLSLALL 470
SD S+ Q YG D LDVTK+++LT QF F+ N ++ Y+ P SL L
Sbjct: 1083 GSDSSIYQFNYGGDSLDVTKQKHLT--QFEFIARNETSFVNRYQ---------PRSLHGL 1131
Query: 471 LLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDA 530
+ ++ ++ +++ + D RK R K+ P +S + P
Sbjct: 1132 V------------------SEEAVEYMKKIVKYKD--RKHKRDKY----VPALSKYPPQR 1167
Query: 531 HFGSISENLADSVVKYTK-----------------GRTDASHVDKFYDMIF-YKNLLSLA 572
GS SE AD V Y K R A K + ++ K + SL
Sbjct: 1168 FLGSTSELFADKVDDYVKKNPHGLLREKGDDSLPIKRRKAPLSKKNFQLLTSVKYMRSLV 1227
Query: 573 NPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSME 632
PGE VG+LA+Q +GEPSTQMTLNTFHFAG G NVTLGIPRLREI+M A+ KTPSM
Sbjct: 1228 EPGEAVGLLASQGVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTASTKPKTPSMT 1287
Query: 633 IPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMN-YQMKFCFIPAH 691
+ + +R K +R+ ++ +++K+ +KE L + E + + F P
Sbjct: 1288 MKVHAGV--AAASIDRFCKKASRLALSHIVDKITVKEQLVLKGESRSKEFTIDLAFYPRA 1345
Query: 692 MYRDKTSVKPSKIIDHFERK----FLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDD 747
Y + V P +I+ F K F KEL+V + K ++ D++
Sbjct: 1346 EYEQEYDVGPLEILMSFATKFPLLFKKELQVELKK-----------------LDADLKSQ 1388
Query: 748 EGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDN 807
+ E +G V+ H Q D EE D+ R ++++DD+
Sbjct: 1389 KAELGKG-------------------KTVREH----QGAAGDAEEDGDDPRSRKQDDDDD 1425
Query: 808 TSNIGE 813
S +G+
Sbjct: 1426 ASEVGD 1431
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/143 (41%), Positives = 84/143 (58%), Gaps = 5/143 (3%)
Query: 869 LKTDGINVNFISQY-----RHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
L T+G N+ + Q+ ++D N +Y NDIH + YG+EAA I++E+ VFAVY
Sbjct: 1584 LTTNGSNLPGLWQFACGKGNSIIDHNGIYSNDIHALLCAYGVEAARAAILQEIGGVFAVY 1643
Query: 924 GIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDS 983
I+VD RHL L+ADYMT G Y NR GI NPS + K ++E + A++ G D
Sbjct: 1644 KIDVDIRHLELIADYMTFDGGYKPFNRKGISTNPSPLLKASYETTAAFLSDATLHGDFDD 1703
Query: 984 LRAPSARVMLGQECRQGTGLFQL 1006
L PS ++LG+ R GTG F +
Sbjct: 1704 LTTPSGNIVLGRLSRTGTGAFDI 1726
>gi|389746863|gb|EIM88042.1| beta and beta-prime subunits of DNA dependent RNA-polymerase [Stereum
hirsutum FP-91666 SS1]
Length = 1754
Score = 522 bits (1345), Expect = e-145, Method: Compositional matrix adjust.
Identities = 326/829 (39%), Positives = 447/829 (53%), Gaps = 119/829 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA + N +QYLVP G PL GLIQDHV++G ++ ++TF TR EY L+Y AL
Sbjct: 673 RAEAMLIANTDNQYLVPTSGKPLRGLIQDHVVAGLWMTNQETFFTREEYFQLLYGALRPE 732
Query: 73 NT------EIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQF 126
+ +RTLPPTIWKP PLWTGKQ++STV++N+TP H + L+ + K +
Sbjct: 733 DDTFHESGRLRTLPPTIWKPKPLWTGKQIISTVMLNITPT------HSQGLN-LSAKAKV 785
Query: 127 GSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCL 186
+ +G + V HGELL G LDK FG++ YGLVH+V++ +GA+ A LL L
Sbjct: 786 PQSAWG--PGSQEGEVIFMHGELLCGTLDKSAFGASDYGLVHSVYELYGADVAGRLLGVL 843
Query: 187 AKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEII 246
++LFT +LQ FT + D+ + + KRT++I A GTE A +D P +
Sbjct: 844 SRLFTKFLQHRAFTCRMDDLTLTDAGNAKRTELIRNAANFGTEGA-------MDNFPSLA 896
Query: 247 SSQLQEAYASIPQF----------RAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANN 296
+ E +A++ + A +D K+ L K+T +I +P GL FP N+
Sbjct: 897 DTPAHEKHAALTRLLRDVLRDDNKMAGLDMTVKTKLAKLTKSIADAVMPNGLSRKFPHNH 956
Query: 297 LQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDG 356
+Q M +SGAKGS VN QISC LGQ ELEG+R +MVSG+TLPSF P+E AGG+V
Sbjct: 957 MQAMTQSGAKGSAVNAQQISCALGQQELEGRRVPVMVSGKTLPSFKPFETKAIAGGYVAS 1016
Query: 357 RFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLS 416
RF+TG++PQEFFFHCMAGREGLIDTAVKTSRSGYLQR L+KHLEG+ VHYD TVR SD S
Sbjct: 1017 RFLTGVKPQEFFFHCMAGREGLIDTAVKTSRSGYLQRSLIKHLEGIRVHYDNTVRGSDDS 1076
Query: 417 LIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFK 476
+ Q YG D LDVTK+++L QF+F+ N +K +L L+ H
Sbjct: 1077 VYQFHYGGDALDVTKQKHLY--QFAFMAQN------FKSLLERLQIH------------- 1115
Query: 477 SSGKPNFIFSPHRT-KFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSI 535
+P + + K+ +L++ + DK R + + + P G+
Sbjct: 1116 ---RPQGVIDDKKAVKYMRKVLKKSAERKDKDTPAKRDALETP----MEKYSPALFLGAT 1168
Query: 536 SENLADSVVKYTKGRTD-----------------------ASHVDKFYD----------M 562
SE A+ + Y K D A K D +
Sbjct: 1169 SEKFAEKLEAYMKANPDGLLTGADDEDEEEDEDAEMEDGTAERKIKRRDPLLAPKHLKSL 1228
Query: 563 IFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMA 622
+ +K L SL PGE VG+LA Q +GEPSTQMTLNTFHFAG G NVTLGIPRLREI+M A
Sbjct: 1229 MLFKYLRSLVEPGEAVGLLAGQGVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTA 1288
Query: 623 TKAIKTPS--MEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHM- 679
+ KTPS M IP +P ++ K +R+T+A V++ V + E L ++P
Sbjct: 1289 STKPKTPSMTMTIPASIPIPTIDS----FCKKASRLTLAQVIDVVTVTESLIVNPNDRTT 1344
Query: 680 ---NYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKF---LKELEVAIAKRAAQGLKNMNI 733
++ + F P Y + V P ++ F F L++ VA K+ LK+
Sbjct: 1345 RTKHFTIDLAFFPPSEYTTEYDVTPKDVLAVFSAMFPLILRKEIVAEMKKLDADLKSQMA 1404
Query: 734 EQSRDQMEDDVEDDEGEGAEGAGAALGRVDVS------SDEERDEEDAV 776
E + + G+GA GAG G VD S S ++ DEE V
Sbjct: 1405 ELGKGKKP------SGDGAPGAGDDDGEVDDSAEPKGRSGKDDDEESEV 1447
Score = 107 bits (267), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 5/151 (3%)
Query: 861 EEKESKHLLKTDGINVNFI-----SQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIRE 915
+ K+ + + T+G N + S +++ + +Y NDI+ + TYG+E A I+RE
Sbjct: 1592 DNKDGRVKVTTNGSNFKGMWRFACSGVESMIEEDSIYSNDIYAILMTYGVEMARAAIVRE 1651
Query: 916 VKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQA 975
+ VF VY I+VD RHL L+ADYMT G Y NR GI ++PS + K +FE + +A
Sbjct: 1652 MSGVFDVYKIDVDSRHLELIADYMTFEGGYKPFNRKGIGMHPSPLLKASFETTAAFLSEA 1711
Query: 976 SMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
++ G D L PS +++G+ GTG+F +
Sbjct: 1712 TLYGDFDDLTTPSGNLVVGRPSLSGTGVFDV 1742
>gi|425770097|gb|EKV08571.1| DNA-directed RNA polymerase [Penicillium digitatum Pd1]
gi|425771644|gb|EKV10081.1| DNA-directed RNA polymerase [Penicillium digitatum PHI26]
Length = 1673
Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust.
Identities = 357/1101 (32%), Positives = 546/1101 (49%), Gaps = 169/1101 (15%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
+ +AEA L + QYLV G PL GLIQDH+ G ++ RD+F +Y L+Y
Sbjct: 634 NELAQAEARMLADADHQYLVATSGKPLRGLIQDHISMGTWVTCRDSFYDEEDYHQLLYSC 693
Query: 69 L-----CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDK 123
L I+ I+ + P + KP LWTGKQ+++T++ N+ P ++ G+ K
Sbjct: 694 LRPEHSHIVTDRIQLVEPAMRKPKCLWTGKQIITTILKNIQPPER---------GGLTLK 744
Query: 124 KQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLL 183
+ + + V + GE L GILDKKQ G T GL+ A+ + +G A L+
Sbjct: 745 SKSSTPGERWGEGNEEGEVIFQDGEYLCGILDKKQLGPTAGGLIDAIHEVYGYSTAGKLI 804
Query: 184 SCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDP 243
L +L T L GF+ G+ D+ + +E DR R + + A ++G E A + LD P
Sbjct: 805 GVLGRLLTRVLNLRGFSCGIDDLRLTKEGDRIRKEKLATAPQMGREVALKYV--TLDKAP 862
Query: 244 EIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTN--------NINQVCLPEGLIEPFPAN 295
+++L + + D +S LD V+N I CLP GL +PFP N
Sbjct: 863 GDQTAELNRRLEEVLR-----DDDKQSGLDSVSNARSAKLSSEITSACLPYGLAKPFPWN 917
Query: 296 NLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVD 355
+Q M SGAKGS VN ISC LGQ LEG+R +M+SG++LPSF +E +P AGG+V
Sbjct: 918 QMQSMTISGAKGSGVNANLISCNLGQQVLEGRRVPLMISGKSLPSFKAFETNPMAGGYVS 977
Query: 356 GRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRD-SD 414
GRF+TGI+PQE++FH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL YD +VR+ SD
Sbjct: 978 GRFLTGIKPQEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKAEYDSSVREASD 1037
Query: 415 LSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLT 474
S++Q LYGEDGLD+TK+ +L D F FL N I
Sbjct: 1038 GSIVQFLYGEDGLDITKQVHLND--FDFLAQNHISISKQ--------------------- 1074
Query: 475 FKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKA-CPQPLISTFQPDAHFG 533
+ + K + + W++ A K RK K P++S F P + G
Sbjct: 1075 ---------VQADDYHKLAKENVTTWHK---DAMKAVRKTGKIDAVDPVLSHFPPGGNLG 1122
Query: 534 SISENLADSVVKYT---------------KGRTDASHVDKFYDMIFYKNLLSLANPGENV 578
S SE A + KY +G+ + +M + K S+ +PGE V
Sbjct: 1123 STSEAFAQELKKYADVNKNKLIKDKKKNIEGKITKKTFEALMNMKYMK---SIIDPGEAV 1179
Query: 579 GVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPD 638
G++A QS+GEPSTQMTLNTFH AG NVTLGIPRLREI+M A+ I TP+M + +
Sbjct: 1180 GIMAGQSVGEPSTQMTLNTFHLAGHSAKNVTLGIPRLREIVMTASAKIMTPTMTLLLNEE 1239
Query: 639 MPKLEKKANRLAKSMTRITMADVLEKVKIKEWL--EISPEPHMNYQMKFCFIPAHMYRDK 696
+ K + + AK+++++++A++++KV++KE + I Y + F P+ Y +
Sbjct: 1240 ISK--DDSEKFAKAISKLSIAELVDKVQVKERIGSGIGHARAKIYDIDIDFFPSEEYTKE 1297
Query: 697 TSVKPSKIIDHFERKFLKEL----EVAIAKRAAQGLKNMNIEQSRDQMEDDV------ED 746
+++ ++ + K + L +V + KR + ++ + Q E V E
Sbjct: 1298 YAIETKDVLIALKSKLIPRLVRLTKVELKKRNEE---KKGVKGTTSQPEIGVSVGKIAEA 1354
Query: 747 DEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDD 806
G +E A D D +R A + + NQ +E P+ E+ R +D
Sbjct: 1355 PRGADSEAQPADDDNEDDEDDAKR----AAGAQNRGNQVS---YEGPDAGEQDIIRRQDT 1407
Query: 807 ---------NTSNIGERFKIEFRDS------------------TNVFVKDVVNQHNIVHK 839
++ + ++ +D + +DVV + + K
Sbjct: 1408 PDEDEDEDESSKPANDTRDVQMKDGSDSDSDSEDESDDETVHDSKACEEDVVGKFEEITK 1467
Query: 840 YSYDKKNHMWC-----------KLLFLP------------------SNLF----EEKESK 866
+ +D KN C KLL LP + +F E K
Sbjct: 1468 FKFDPKNGNTCSIQLQYDVETPKLLLLPLVEKVLHLAVIQCIPGMGNCVFVEADEAKGDP 1527
Query: 867 HLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIE 926
+ T+G+N+ + Y+ ++ + +Y N IH M + YG+EAA I+RE+ VF + I
Sbjct: 1528 ANILTEGVNLLAMRDYQDIIKPHSIYTNSIHDMLNLYGVEAARATIVREMDAVFKGHSIS 1587
Query: 927 VDPRHLSLVADYMTHSGTYVAMNRNG-IRLNPSFIQKMTFEMPLEKIRQASMQGREDSLR 985
VD RHL+L+ D MT SG + A +RNG ++ S + +FE + ++ ++ D+L+
Sbjct: 1588 VDNRHLNLIGDVMTQSGGFKAFSRNGLVKDASSAFARASFETTVGALKDVVLERGADNLK 1647
Query: 986 APSARVMLGQECRQGTGLFQL 1006
+PS+R+++G+ GTG F +
Sbjct: 1648 SPSSRIVVGRVGTVGTGSFDI 1668
>gi|367035594|ref|XP_003667079.1| hypothetical protein MYCTH_2312447 [Myceliophthora thermophila ATCC
42464]
gi|347014352|gb|AEO61834.1| hypothetical protein MYCTH_2312447 [Myceliophthora thermophila ATCC
42464]
Length = 1721
Score = 517 bits (1331), Expect = e-143, Method: Compositional matrix adjust.
Identities = 365/1094 (33%), Positives = 540/1094 (49%), Gaps = 154/1094 (14%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
+ + EA L + QY+ G+PL GLIQDH+ +L +D FL + Y L+Y A
Sbjct: 672 NELARVEALQLADTDHQYVSGTAGNPLRGLIQDHLSVSVELCSKDVFLDQGAYHQLIYSA 731
Query: 69 L-----CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELL---SGI 120
L I I +PP + KP+ WTGKQV++T++ N+ P D G L S
Sbjct: 732 LRPESGHITGERIELVPPAVIKPVSRWTGKQVITTILKNIRPAD-----CGNLWMNGSAK 786
Query: 121 LDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAI 180
+ + +G + V R GE +SGILDK Q G + G VHAV + +G A
Sbjct: 787 IKSRSWGEDSE-------EGQVMFRDGEFISGILDKSQLGPSSGGFVHAVHEIYGPSVAG 839
Query: 181 SLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL--- 237
LLS + +L T YL + FT G+ D+ + + ++ R + I A +G A + L
Sbjct: 840 KLLSSMGRLLTRYLAMIAFTCGMDDLRMTPQGEKDRRETIRAAADIGLRVAAKYVSLEEQ 899
Query: 238 -PLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANN 296
P DP ++ + Q ++ + L +++ I ++CLP GL + FP N+
Sbjct: 900 KPTKDDPLLLERLEEVLRDDKKQEGLELLTSHA--LADLSSEITRLCLPAGLEKQFPKNH 957
Query: 297 LQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDG 356
+Q M SGAKGS VN ISC LGQ LEG+R +MVSG+TLPSF P++ RAGG++
Sbjct: 958 MQSMTTSGAKGSPVNANLISCNLGQQVLEGRRVPVMVSGKTLPSFKPFDTDVRAGGYIVN 1017
Query: 357 RFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLS 416
RF+TGI+PQE++FH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL V YD +VRDSD S
Sbjct: 1018 RFLTGIRPQEYYFHHMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLRVSYDSSVRDSDGS 1077
Query: 417 LIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFK 476
++Q L+GEDG+D++K++YL D +F V+ NL + P + +
Sbjct: 1078 VVQFLFGEDGIDISKQKYLNDFEF--------------VLRNLDSQLPQ-------IRYH 1116
Query: 477 SSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACP-QPLISTFQPDAHFGSI 535
G T L E ++ + + R P P+ + P A +
Sbjct: 1117 EPG-------------TQALFEHKDEVMKRMKSAIRSSNTRNPLDPVTAELDPSAFAFAT 1163
Query: 536 SENLADSVVKYTKGRTDASHVDK--------------FYDMIFYKNLLSLANPGENVGVL 581
SE ++ Y K D DK ++ K + SL PGE VG++
Sbjct: 1164 SEKFYTKMMDYVKTNKDGLIKDKKGPEKQQGLIARKTAEKILAAKYIRSLVEPGEAVGIV 1223
Query: 582 AAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPK 641
A QS+GEPSTQMTLNTFH AG NVTLGIPRLREILM A+ TPSM + ++
Sbjct: 1224 AGQSVGEPSTQMTLNTFHLAGHSARNVTLGIPRLREILMTASTKPSTPSMTLVLNEELS- 1282
Query: 642 LEKKANRLAKSMTRITMADVLEKVKIKEWL--EISPEPHMNYQMKFCFIPAHMYRDKTSV 699
E+ R AKS++ + +A V ++ ++E + I +++++ F A Y ++
Sbjct: 1283 -EQDGERFAKSISVLPLAHVTKEAVVREHVGRGIGYALAKSFEIRLRFFKADEYIKMYAI 1341
Query: 700 KPSKIIDHFERKFLKELEV----AIAKRAAQ--------GLKNMNIEQSRDQMEDD---- 743
+ +++ ERKF+ L I K+ Q G+K+ +E + E +
Sbjct: 1342 TIADVLNTVERKFIPLLSALTRKEIKKKQKQNSAATPEIGVKSGVVEMAAPNPERERGPG 1401
Query: 744 -----VEDDEGEGAEGAGAALGRVDVSSDEERDEE-DAVQSHKKVNQEEDNDFEEPE--- 794
+++ E A A R + S DEE DA+Q Q E +D EE E
Sbjct: 1402 GDDDDDDEEGEEDATSAKQRANRSEAVSYGPNDEEDDAIQQQL---QRETDDAEEGEEQL 1458
Query: 795 ---DEERMSEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC- 850
DE E +D +G+ E R + N+H V ++ D+ W
Sbjct: 1459 EFVDEAYGGSPEPED---GLGDGKTDEGRSRSREARIKNKNEH--VARFRCDEVGGEWVD 1513
Query: 851 ----------KLLFLP------------------SNLFEEKESKH----------LLKTD 872
K+L L + FE K+ K L+ T+
Sbjct: 1514 FTLEFDASIPKILMLSLVQEAVKKSLIQQIDRIGTATFEPKKVKDAVTGEERTELLVHTE 1573
Query: 873 GINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHL 932
G N+ + QY ++ N++ NDI + YG+EA I++E+ VF+ +GI VDPRHL
Sbjct: 1574 GANLRAMQQYGDYINPNRISTNDIAQVLEVYGVEACRSNIVQELSAVFSGHGIAVDPRHL 1633
Query: 933 SLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVM 992
+L+ADYMT +G + A NR G+ N S KM++E + ++ A ++G D L PS+R++
Sbjct: 1634 NLIADYMTRAGGFTAFNRIGLTSNVSPFTKMSYETTVGFLKDAVLEGDWDCLATPSSRLV 1693
Query: 993 LGQECRQGTGLFQL 1006
G+ GTG F +
Sbjct: 1694 AGKLGTLGTGSFDV 1707
>gi|164655658|ref|XP_001728958.1| hypothetical protein MGL_3952 [Malassezia globosa CBS 7966]
gi|159102846|gb|EDP41744.1| hypothetical protein MGL_3952 [Malassezia globosa CBS 7966]
Length = 1673
Score = 516 bits (1329), Expect = e-143, Method: Compositional matrix adjust.
Identities = 326/831 (39%), Positives = 448/831 (53%), Gaps = 116/831 (13%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S +AE + N +QYLVP G+PL GLIQDHV+ G ++ ++T TR EY ++ A
Sbjct: 623 SQMARAECYNIANTDNQYLVPTSGNPLRGLIQDHVVGGVWMTCKNTLYTRDEYQQFIFGA 682
Query: 69 L----CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKK 124
+ IRTLPP I KP P WTGKQV+ST++ N+TP H + L+ + K
Sbjct: 683 IRPETYGQGGRIRTLPPAILKPKPRWTGKQVISTILCNVTPP------HAQGLN-MDAKA 735
Query: 125 QFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLS 184
+ G+ +G H + V +R GELL+G+LDK Q G++ YGLVHAV++ +GAE A LLS
Sbjct: 736 RVGAKYWGEQHK-EEEMVVVRDGELLTGVLDKSQIGASAYGLVHAVYEIYGAESAGRLLS 794
Query: 185 CLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTD-- 242
++LFT++LQ F+ + D+++ E D R KI+ G EAA N +GL D D
Sbjct: 795 IFSRLFTMWLQHNAFSCRMDDLVLSSEGDATRQKILKDGATHGLEAALNNVGLG-DGDSK 853
Query: 243 -PEI---ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQ 298
PE + +L+E + A +D S +K+T+++ C+P GL FP NN+Q
Sbjct: 854 APETHRNLRVRLEEVLRDDNKL-AALDAAMMSASNKLTSSVISSCIPSGLWRVFPENNMQ 912
Query: 299 FMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRF 358
M SGAKGS VN ISCLLG LEG+R +MVSG+TLPSF +E + RAGGFV GRF
Sbjct: 913 MMAVSGAKGSAVNVSSISCLLGPQALEGRRVPVMVSGKTLPSFKAFETAARAGGFVAGRF 972
Query: 359 MTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLI 418
+TGI PQE++FHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEG++V YD TVR+SD ++
Sbjct: 973 LTGIAPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGISVQYDQTVRNSDGFVL 1032
Query: 419 QVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSS 478
Q YGED LDV+K +YL +F F N + SY+ N
Sbjct: 1033 QFHYGEDSLDVSKSKYL--DRFDFTIQNFE---SYRRRYN-------------------- 1067
Query: 479 GKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISEN 538
P + + TM++ + D ++ +K +K P++S + P HFGS+SE
Sbjct: 1068 --------PVQLESTMEV----EKAPDYMKRALKKPYKYA--PVMSVYSPARHFGSMSET 1113
Query: 539 LADSVVKYT----------KGRTDASH------------VDKFYDMIFYKNLLSLANPGE 576
A V Y K + AS + F M L PGE
Sbjct: 1114 FAQKVEDYVSKNPRALLARKKKDSASEGVPMQLAHPKLSTEAFRAMTKVLYHRGLVEPGE 1173
Query: 577 NVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFL 636
NVG+LAAQ IGEPSTQMTLNTFHFAG G NVTLGIPRLREI+M A+K IKTP M +P L
Sbjct: 1174 NVGLLAAQGIGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTASKDIKTPVMRLPIL 1233
Query: 637 PDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQ------MKFCFIPA 690
+ + + K +R+ ++ ++E+ + E + + P YQ ++ F PA
Sbjct: 1234 DGVTNEQMRI--FCKDGSRLVLSQIIEEATVTERM-MPKTPANGYQRQKLYTVRLQFYPA 1290
Query: 691 HMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGE 750
+ + + I+ E F+ +E I + LK + RDQ+ GE
Sbjct: 1291 DEVKQEYNASTEHILSGLEATFVPLVEREIVRE----LKRLR----RDQVRQSQSIGRGE 1342
Query: 751 GAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSE 801
+ A ERD + + + N +D D ER+SE
Sbjct: 1343 TFNESMA-----------ERDADVPIYRNAAANDSDDED-------ERLSE 1375
Score = 96.7 bits (239), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 80/135 (59%), Gaps = 1/135 (0%)
Query: 869 LKTDGINVNFISQYRH-LLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 927
L +GIN+ + + ++DL+++Y NDI + YG+EAA I+ E+K +F YGI V
Sbjct: 1527 LTAEGINLPGMWDFGFGVVDLDRIYSNDIGALLYCYGVEAARAAIVSELKGIFDTYGIGV 1586
Query: 928 DPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAP 987
RH+ L+ADY T G + +R G+ PS + K +FEM + + AS+ D L +P
Sbjct: 1587 SMRHMFLIADYQTAFGDFRPFSRGGLADAPSPLLKASFEMTMAFLSGASLFQEMDDLTSP 1646
Query: 988 SARVMLGQECRQGTG 1002
S+ +++G+ R GTG
Sbjct: 1647 SSNIVVGRPVRSGTG 1661
>gi|390601472|gb|EIN10866.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Punctularia strigosozonata HHB-11173 SS5]
Length = 1723
Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust.
Identities = 302/733 (41%), Positives = 419/733 (57%), Gaps = 82/733 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL--- 69
+AEA + N +QYLV G PL GLIQDHV++G ++ ++ F TR EY L+Y AL
Sbjct: 681 RAEAMMIANTDNQYLVTTSGKPLRGLIQDHVVAGVWMTSKEAFFTREEYFQLLYGALRPE 740
Query: 70 ---CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQF 126
+ + TLPPTIWKP LWTGKQ++STV++N+TP + + +F
Sbjct: 741 EEGGHITGRLVTLPPTIWKPNALWTGKQIISTVLLNITPSNARGL-----------NTEF 789
Query: 127 GSTQYGLV---HAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLL 183
+ G + ++ + V GELL G+LDK FG+++YG+VH+V++ + +E A LL
Sbjct: 790 KAKVPGYLWGKDSIEEDKVVFVDGELLCGVLDKSSFGASEYGMVHSVYELYSSEVAGRLL 849
Query: 184 SCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAAC----NALGLPL 239
L++LFT +LQ FT + D+ + D KR I+ R LGTEAA + + +P
Sbjct: 850 GILSRLFTKFLQHRAFTCRMDDLTLTPTGDAKRRDILQNGRNLGTEAAMENFPSLVQVPP 909
Query: 240 DTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQF 299
P + S L+E + A +D K+ L +T I +P GL FP N++Q
Sbjct: 910 VDKPGALESLLREVLRDDSKM-AGLDVTVKTKLATLTKAIADAVMPRGLSRQFPLNHMQT 968
Query: 300 MVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFM 359
M SGAKGS VN QISC LGQ ELEG+R +M+SG+TLPSF +E AGG+V RF+
Sbjct: 969 MTLSGAKGSAVNAQQISCALGQQELEGRRVPVMISGKTLPSFKAFETKAIAGGYVASRFL 1028
Query: 360 TGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQ 419
TGI+PQEF+FHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEGL VHYD TVR SD S+ Q
Sbjct: 1029 TGIKPQEFYFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLKVHYDYTVRGSDDSIYQ 1088
Query: 420 VLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSG 479
YG D LDVTK++YL QF F N L+L+ K+ G
Sbjct: 1089 FHYGGDALDVTKQKYLY--QFDFTSRN---------ELSLINKY-------------QPG 1124
Query: 480 KPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENL 539
+ N I + D LE ++ K+ K R K+ P++S F P + G+ SE
Sbjct: 1125 RINRIVN------DSDALEYSKKIIRKSAPK-RHKYA----PILSKFNPSLYLGATSERF 1173
Query: 540 ADSVVKY--------TKGRTDASHV-----------DKFYDMIFYKNLLSLANPGENVGV 580
A+SV Y K RT + V D+F ++ + + +L +PGE VG+
Sbjct: 1174 AESVESYLKFNPHGLLKSRTTENAVELRRRHPLLTKDRFRLLMNVQYMRALVDPGEAVGL 1233
Query: 581 LAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMP 640
LA+Q +GEPSTQMTLNTFHFAG G NVTLGIPRLREI+M A+K KTPSM +P PD+
Sbjct: 1234 LASQGVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTASKQPKTPSMIVPIRPDVG 1293
Query: 641 KLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMN-YQMKFCFIPAHMYRDKTSV 699
+++ K R++++ V++++ + E L + + + ++ F P Y + V
Sbjct: 1294 --DRELETFCKQANRLSLSQVIDEITVTEKLVTNGKARRKEFNIRLAFFPREEYEREYHV 1351
Query: 700 KPSKIIDHFERKF 712
P +I+ F +F
Sbjct: 1352 SPPEILAAFGARF 1364
Score = 105 bits (261), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 81/143 (56%), Gaps = 5/143 (3%)
Query: 869 LKTDGINVNFISQYRHL-----LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
+ T+G N + ++ L +D + +Y NDI+ TYG+EAA I+RE+ VF Y
Sbjct: 1574 ITTNGSNFRGVWEFSALSEVSIIDHDGIYSNDIYGFLMTYGVEAARSAILREISGVFDAY 1633
Query: 924 GIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDS 983
I+VD RHL L+ADYMT G Y NR GI + S + K ++E + A++ G D+
Sbjct: 1634 KIDVDGRHLELIADYMTFDGGYKPFNRKGISTHSSPLMKASYETTAAFLSDATLYGDFDT 1693
Query: 984 LRAPSARVMLGQECRQGTGLFQL 1006
L +PS ++LG+ GTG F +
Sbjct: 1694 LTSPSGNIVLGKPSTTGTGSFDV 1716
>gi|343429431|emb|CBQ73004.1| related to DNA-directed RNA polymerase I [Sporisorium reilianum SRZ2]
Length = 1800
Score = 513 bits (1322), Expect = e-142, Method: Compositional matrix adjust.
Identities = 321/862 (37%), Positives = 452/862 (52%), Gaps = 127/862 (14%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S +AE ++ N +QYL P G+PL GLIQDHV++G ++ ++T TRAEY ++Y A
Sbjct: 711 SQAARAECYYVANTDNQYLTPTSGNPLRGLIQDHVVAGVWMTSKNTLYTRAEYQQMLYGA 770
Query: 69 L-----CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDK 123
L + T+ P + KP PLWTGKQV++TV++NL P + + K
Sbjct: 771 LRPEGKYTGGGRVLTVAPALLKPEPLWTGKQVITTVLLNLKPAKADGLN-------LTSK 823
Query: 124 KQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLL 183
+ +G HA + V I GELL G+LDK FG++ +GLVHA+++ +G+E A LL
Sbjct: 824 AKVAGRMWGKDHAS-EEKVIIEDGELLQGVLDKAAFGASSFGLVHAIFEIYGSETAGKLL 882
Query: 184 SCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLP----- 238
S L++LFT +LQ F+ + D+L+ +E D R I+ A+ G A +GL
Sbjct: 883 SILSRLFTKFLQTNAFSCRMDDLLLSKEGDEVRRTTIDAAKNNGKGVAMKTVGLEGEDEK 942
Query: 239 -LDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNL 297
DTD + +L+E + A +D + + + +T+ + + CLP GL + FP NN+
Sbjct: 943 NADTDRNL-RIRLEEVLRDDDKL-AVLDGEMMNSSNALTSKVIESCLPSGLYKKFPENNM 1000
Query: 298 QFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGR 357
Q M SGAKGS VN QISCLLGQ LEG+R +MVSG++LPSF P+E S RAGGFV GR
Sbjct: 1001 QMMTGSGAKGSAVNVSQISCLLGQQALEGRRVPLMVSGKSLPSFRPFETSARAGGFVSGR 1060
Query: 358 FMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSL 417
F+TGI+PQE+FFHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEG+ + YD TVR++D S+
Sbjct: 1061 FLTGIRPQEYFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGVHIQYDNTVRNADGSI 1120
Query: 418 IQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKH-PLSLALLLLLTFK 476
+Q YGED LD TK +Y+ QF F N + N K++ P L ++
Sbjct: 1121 LQFNYGEDALDTTKSKYI--GQFDFTAANFE---------NYNKRYDPKQLGEVVEAELA 1169
Query: 477 SSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSIS 536
+ + PH KY P++S + P HFGS+S
Sbjct: 1170 AEHMKKALKKPH---------------------KY--------DPVLSVYTPSTHFGSMS 1200
Query: 537 ENLADSVVKYTK------------------------GRTDASHVDK------------FY 560
E A + Y + DA+ V+K F
Sbjct: 1201 EKYAKEIEAYIEKNPSKLLADKKKKSKKRKSEVDAGAPADAATVEKLRFAKEKLGVEAFR 1260
Query: 561 DMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILM 620
M L +PGE VG+LAAQ +GEPSTQMTLNTFHFAG G NVTLGIPRLREI+M
Sbjct: 1261 AMCKVLYHRGLVDPGEAVGLLAAQGVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVM 1320
Query: 621 MATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHM- 679
A++ IKTP M +P L + + K K +R+ ++ V+++ + E +ISP+
Sbjct: 1321 TASQKIKTPIMRLPVLDGITNDQIKT--FCKDGSRLVLSQVIDEATVTE--KISPKSEQT 1376
Query: 680 ------NYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAI-----AKRAAQGL 728
Y ++ F PA +++ + S I+ F LE +I ++ L
Sbjct: 1377 GFHRQKTYTVRLDFYPADECKEEYNCTTSHILRGLHETFAPNLENSINLEMRKQKREHAL 1436
Query: 729 KNMNIEQ----SRDQMEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQ------- 777
+ I + S + D DD+ E A GA + R + DEEDA
Sbjct: 1437 QAAAIGKGQTFSDNAPAGDNADDDAERANGANGSQARARAQEADSDDEEDASSEVGDGDA 1496
Query: 778 --SHKKVNQEEDNDFEEPEDEE 797
+ +K +EE +DE+
Sbjct: 1497 DDAKRKQKSAAHASYEEGDDED 1518
Score = 109 bits (273), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 86/140 (61%), Gaps = 1/140 (0%)
Query: 869 LKTDGINVNFISQYRH-LLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 927
L +GIN + + ++DL+ LY NDI + TYG+EAA I+ E++ +F YGI V
Sbjct: 1650 LTAEGINFRDLWDFGFGVVDLDNLYTNDIGAVLHTYGVEAARAAIVSEMRGIFDTYGIAV 1709
Query: 928 DPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAP 987
PRHL L+ADY T +G + NR+GI + S + K +FEM + I +++ G D L+ P
Sbjct: 1710 SPRHLFLIADYQTAAGGFRPFNRSGIAESSSTLLKASFEMTMAFIGGSALHGDVDMLKTP 1769
Query: 988 SARVMLGQECRQGTGLFQLR 1007
S+++++G+ GTG ++R
Sbjct: 1770 SSKLVVGRPVSSGTGTPEIR 1789
>gi|212531955|ref|XP_002146134.1| DNA-directed RNA polymerase I subunit (Rpa190), putative [Talaromyces
marneffei ATCC 18224]
gi|210071498|gb|EEA25587.1| DNA-directed RNA polymerase I subunit (Rpa190), putative [Talaromyces
marneffei ATCC 18224]
Length = 1689
Score = 509 bits (1311), Expect = e-141, Method: Compositional matrix adjust.
Identities = 366/1090 (33%), Positives = 561/1090 (51%), Gaps = 143/1090 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
++E + + QY+ DG PL GLIQDH+ L+ RDTF EY L+Y L
Sbjct: 642 RSELLMITDADRQYISSTDGKPLRGLIQDHITVSTFLTSRDTFFEEEEYHELLYSCLRPE 701
Query: 73 NT-----EIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
N I+ + P +P LWTGKQV+STV+ N+ P + R G L G K
Sbjct: 702 NANTVTDRIQLVEPAFIRPRRLWTGKQVISTVLKNIMPPN----RRGLNLQG---KSSTP 754
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
++G + V + GELL GILDKKQ G++ G + A+ + +G A SLLS L
Sbjct: 755 GDRWG--KGNEEDKVIFKDGELLCGILDKKQIGASGGGFIDAIHEIYGNTIAGSLLSILG 812
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL----PLDTDP 243
+L T YL F+ G+ D+ + E D+KR +I+ KA LG + + L D D
Sbjct: 813 RLLTRYLNMRAFSCGIEDLRLTPEGDQKRVEILKKAGELGKNVSLKYVTLDQNPAADQDA 872
Query: 244 EIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVES 303
E+ +L++ Q ++ +D Y S K+T++I CLP GLI+ FP N +Q M +
Sbjct: 873 EL-KRRLEDVLRD-DQKQSGLDSVYNSQTRKLTSDITAGCLPHGLIKQFPWNQMQLMTTT 930
Query: 304 GAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQ 363
GAKGS+VN ISC LGQ LEG+R +MVSG+TLPS+ +E P+AGG+V GRF+TGI+
Sbjct: 931 GAKGSSVNANLISCNLGQQVLEGRRVPVMVSGKTLPSYRAFETHPQAGGYVCGRFLTGIK 990
Query: 364 PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDS--DLSLIQVL 421
PQE++FH MAGREGLIDTAVKT++SGYLQRCL+K +E + V YD +VRD+ S+IQ +
Sbjct: 991 PQEYYFHTMAGREGLIDTAVKTAKSGYLQRCLIKGMEAVKVEYDSSVRDTANGGSVIQFI 1050
Query: 422 YGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKP 481
YGEDGLDV K+ +L + FSFL N S LN+ + +
Sbjct: 1051 YGEDGLDVAKQVHL--QNFSFLAQNY---VSTMAQLNMNQDY------------------ 1087
Query: 482 NFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLAD 541
K + +W++ D ++ R P+++ +QP HFGS+SE +
Sbjct: 1088 --------HKLEKPEVTEWHK--DAMKQVKRTGRLDAKDPVLAVYQPGGHFGSVSEAFSQ 1137
Query: 542 SVVKYTKGRTDASHVDK------------FYDMIFYKNLLSLANPGENVGVLAAQSIGEP 589
++ KY D DK F ++ K L S+ +PG+ VG++A QSIG
Sbjct: 1138 ALKKYEDSNPDKLLKDKKAGIAGALSKKAFESVMHMKYLNSVIDPGDAVGIVAGQSIGSQ 1197
Query: 590 STQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRL 649
+TQMTLNTFH AG NVTLG+PRLREI+M A+K TP+M + + ++ E+K
Sbjct: 1198 TTQMTLNTFHLAGHSARNVTLGVPRLREIVMTASKKPMTPTMTVEVIEELS--EEKGESF 1255
Query: 650 AKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKII---- 705
AK ++R+++A+V++ ++++E E Y + F + Y + ++ ++
Sbjct: 1256 AKGISRLSIAEVIDSLQVRETTSGKDEKFKIYDIDMKFFDSKEYEKEYAITKRDLVRALQ 1315
Query: 706 DHFERKFLKELEVAIAKR-AAQGLKNMNIEQSRDQME-DDVEDDEGEGAEGAGAALGRVD 763
D F KF+K++ I +R Q L + Q + E EG E G D
Sbjct: 1316 DEFLPKFIKKISDEIKRRYDEQNLAGFSAAQPEIGVSIGTTERFEGAIRETQAGGAGDDD 1375
Query: 764 VSSDEERDEEDAVQSHKKVNQEEDN--DFEEPEDEERM------------------SERE 803
+DE+ ++++ + Q DN +E P+D+E + ++++
Sbjct: 1376 DDADEDNEDDEEDAKRGQSKQNRDNQVSYEAPDDDEDIIRKEQDESDLEDDDEDNENKQK 1435
Query: 804 ED-------------DNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC 850
+D D+ + E+ K++ R K+++ ++ + + Y+ + C
Sbjct: 1436 QDRKLEDESESSDSSDDEDEMTEQAKLD-RTDVEERTKEILGKYPEISIFKYNAQEGNSC 1494
Query: 851 -----------KLLFLP------------------SNLF--EEKESKHLLKTD--GINVN 877
KLL LP S L+ + E+K K D G+N+
Sbjct: 1495 FIRLQYKISTPKLLVLPLVEDCARRAVIQAVQDIGSCLYTPADAENKEPAKIDIEGVNLL 1554
Query: 878 FISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVAD 937
+ Y+ + + + N IH M YG+EAA IIRE+ +VF+ + I VD RHL+L+ D
Sbjct: 1555 AMRDYQDYIKPHTIRTNSIHDMLIYYGVEAARSTIIREMSDVFSGHSITVDNRHLNLIGD 1614
Query: 938 YMTHSGTYVAMNRNG-IRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQE 996
MTHSG + + +RNG IR + S K +FE + +R A ++ D L++PS+R+++G+
Sbjct: 1615 VMTHSGGFKSYSRNGLIRESNSPFSKSSFETSVGFMRDAVLERDFDDLKSPSSRIVVGRL 1674
Query: 997 CRQGTGLFQL 1006
GTG F +
Sbjct: 1675 GNVGTGAFDI 1684
>gi|154296469|ref|XP_001548665.1| hypothetical protein BC1G_12809 [Botryotinia fuckeliana B05.10]
Length = 1774
Score = 506 bits (1304), Expect = e-140, Method: Compositional matrix adjust.
Identities = 349/1020 (34%), Positives = 525/1020 (51%), Gaps = 145/1020 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL--- 69
+AEA + + QYL G PL GLIQDH+ + +DT+ RA Y L+Y +
Sbjct: 651 RAEALQIADTDHQYLSATAGKPLRGLIQDHISVSVWMCNKDTYFDRATYQQLIYNCIRPE 710
Query: 70 --CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
I+ I T+PP I KP+ WTGKQV++T++ N+TP + I L+G K Q
Sbjct: 711 SGHIVGERIVTVPPAIIKPVARWTGKQVITTILKNITPLNCAPIS----LTG---KTQTP 763
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
+ ++G + V GE ++GILDK Q G GL+H+V + +G A LLS L
Sbjct: 764 ADRWGADSE--EGVVLFNGGEFITGILDKAQIGPAGGGLIHSVHEVYGPATAGKLLSILG 821
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL----PLDTDP 243
+L T YL FT G+ D+ + E ++ R + ++ A ++G E A + L P +TD
Sbjct: 822 RLLTKYLHMRAFTCGMDDLRLTPEGEQTRIETLSDAGKIGLEVAAKYVSLEDQKPTETDQ 881
Query: 244 EIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVES 303
E+++ +L++ + +A +D + K++ +I CLP+GL++ FP N +Q M S
Sbjct: 882 ELLN-RLEDVMRDDSK-QAGLDALMNARAGKLSTSITNACLPQGLVKQFPHNQMQNMTVS 939
Query: 304 GAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQ 363
GAKGS VN ISC LGQ LEG+R +MVSG++LP F P++ RAGG++ RF+TGI+
Sbjct: 940 GAKGSAVNANLISCNLGQQVLEGRRVPLMVSGKSLPCFKPFDTHIRAGGYIVNRFLTGIR 999
Query: 364 PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYG 423
PQE++FH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL V YD +VRDSD S+IQ +YG
Sbjct: 1000 PQEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKVEYDTSVRDSDGSMIQFIYG 1059
Query: 424 EDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNF 483
EDGLDVTK+++LTD F FL N+ ++ L L + G P
Sbjct: 1060 EDGLDVTKQKHLTD--FKFLLQNL-------------------MSELAQLNY---GDP-- 1093
Query: 484 IFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSV 543
R + + E + KA K + P P++S + P + + SE +++
Sbjct: 1094 -----RYETIFEEKEAIIKRMKKALKHAKANDLNGPDPVLSEYNPGKYGYATSEKYFETL 1148
Query: 544 VKYTKGRTDASHVDK-----------FYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQ 592
Y K D DK ++ K L S+ PGE VG++A QS+GEPSTQ
Sbjct: 1149 TNYMKTNPDGLVKDKDHPDGVGPRKALEPVLVAKYLKSVVEPGEAVGIVAGQSVGEPSTQ 1208
Query: 593 MTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKS 652
MTLNTFH AG NVTLGIPRLREI+M A+ I TPSM + ++ E + AKS
Sbjct: 1209 MTLNTFHLAGHSSKNVTLGIPRLREIVMTASNHISTPSMTLTLNEELTPDE--CEKFAKS 1266
Query: 653 MTRITMADVLEKVKIKEWL--EISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFER 710
++ +++A+VL+ +KE + ++ + Y + P+ Y + ++ ++ +R
Sbjct: 1267 ISILSLAEVLDWATVKERIGRGVAFQQAKIYDIHIKLFPSKEYCETYAIDIDDVLFTLQR 1326
Query: 711 KFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRV-DVSSDEE 769
+F +L+ R A G K +E++ V + G ++G + + D E
Sbjct: 1327 RFTSKLQHLT--RKALGRK--KVEKAGKANTAAVPE--------IGKSVGTIEEARPDAE 1374
Query: 770 RD----------EEDAVQSHKKVNQEEDNDFEEPEDEERMSER------------EEDDN 807
R+ ++DA +K N+ E EPED E M + +ED+
Sbjct: 1375 REMGEDDEDDDGDDDATNDKQKANRSEAAQNAEPEDVEDMEDEGIGGSPRAAQSDDEDEG 1434
Query: 808 TSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC-----------KLLFLP 856
GER K + ++ V + + ++ +D+ N WC K+L L
Sbjct: 1435 DDENGERKKRKTTAASEELEAQVKKRCEDITRFRFDQDNAEWCDVSLEYDADVPKVLML- 1493
Query: 857 SNLFEE------------------------KESKH-------LLKTDGINVNFISQYRHL 885
++ EE K+SK ++ T+G+N+ + Y
Sbjct: 1494 -SIVEEALRSCLIQHIPGIGSCTYDGDNEVKDSKTGKMVKIPVVHTEGVNLKAMQNYAAF 1552
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
++ NK+ NDI M YG+EA I++E+ +VF + I VD RHL L+ADYMT SG +
Sbjct: 1553 INPNKISTNDIAAMLENYGVEACRSTIVQELHSVFDGHAIAVDMRHLKLIADYMTQSGGF 1612
>gi|388581035|gb|EIM21346.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Wallemia sebi CBS 633.66]
Length = 1746
Score = 506 bits (1303), Expect = e-140, Method: Compositional matrix adjust.
Identities = 296/710 (41%), Positives = 408/710 (57%), Gaps = 103/710 (14%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S KAE F+ N +QYLVP G PL GLIQDHV++G+ ++++ TF TR EY L+Y A
Sbjct: 698 SAIAKAEMMFIANNDNQYLVPTSGKPLRGLIQDHVVAGSWMTMKSTFFTRDEYQQLLYGA 757
Query: 69 LCILNT-----EIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDK 123
L N + LPP IWKP PLWTGKQ++STV+ N+TP + + L+
Sbjct: 758 LRPENDYTGEGRVHLLPPAIWKPQPLWTGKQIISTVLKNITPSNARGLN--------LES 809
Query: 124 KQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLL 183
+ +Y + V I G + SGI+D QFG++ YGLVH+V++ +G+E A LL
Sbjct: 810 ESKVKAEYLPAWGSNENKVIIVDGVVCSGIIDSSQFGTSSYGLVHSVFELYGSECAGKLL 869
Query: 184 SCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDP 243
S L++LFT YLQ GFT + D+++ E + R +I+ + G EAA +++GL T+
Sbjct: 870 SILSRLFTKYLQHRGFTCRMDDLILTDEGNEVRDEILEGTKNYGFEAAIDSIGL---TEE 926
Query: 244 EIISSQ--------LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPAN 295
+ S+ L+E + A +D+ S +++ + I + LP GL FP N
Sbjct: 927 QSKGSEGKRNVLMRLEEVLRDDNKL-AMLDQTSTSKNEQIKSQILKKTLPAGLWRRFPTN 985
Query: 296 NLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVD 355
+ Q MV +G+KGS VN QISCLLGQ LEG+R +MVSG+TLP F P+E RAGGFV
Sbjct: 986 HFQAMVLTGSKGSAVNASQISCLLGQQSLEGRRVPVMVSGKTLPCFKPFETDMRAGGFVA 1045
Query: 356 GRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDL 415
RF+TGI+PQE++FHCMAGREGLIDTAVKT+ SGYLQRCL+KHLEG+ VHYD TVRDSD
Sbjct: 1046 QRFLTGIRPQEYYFHCMAGREGLIDTAVKTANSGYLQRCLIKHLEGIKVHYDHTVRDSDN 1105
Query: 416 SLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTF 475
S+IQ YGED LDVTK+ YL +F+ + +Y ++ K +P +L
Sbjct: 1106 SVIQFQYGEDALDVTKQVYLNKYKFA--------VNNYDSMMR--KYNPKALI------- 1148
Query: 476 KSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACP---QPLISTFQPDAHF 532
GK +D++A + Y KK P P++S + P +
Sbjct: 1149 ---GK----------------------VDEEAAEAYMKKALKKPYKYAPVLSEYSPSVYL 1183
Query: 533 GSISENLADSVVKYTKGRTD------ASHVDKFYDMIF-------------------YKN 567
G+ SE A V Y + D +S +K D +KN
Sbjct: 1184 GATSEKFAKDVDAYAENNPDGLLIPQSSKKNKLSDAEIEALVKKLKQQGGAIAKPKQFKN 1243
Query: 568 LL------SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMM 621
LL SL PGE VG+LA+Q +GEPSTQMTLNTFHFAG G NVTLGIPRLREI+M
Sbjct: 1244 LLKTIYARSLVEPGEAVGLLASQGVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMT 1303
Query: 622 ATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWL 671
A+ IKTP+M++P + + E K K++ ++T+A+ ++ V++ E L
Sbjct: 1304 ASAQIKTPTMKLPVFEHITEEEMKV--FCKNLNKLTLAECVDDVRVIESL 1351
Score = 116 bits (290), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 58/139 (41%), Positives = 89/139 (64%), Gaps = 1/139 (0%)
Query: 869 LKTDGINVNFISQY-RHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 927
++T+G N+ I + + +DLN+LY NDI + TYG+EAA II EV +F VYGI V
Sbjct: 1603 IQTEGANLMGIRSFGQDFIDLNQLYSNDIDAIRRTYGVEAARASIINEVAGIFQVYGIGV 1662
Query: 928 DPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAP 987
D RHL+L+ADYMT+ G Y NR G+ +PS + + +FE I +A++ G D +++P
Sbjct: 1663 DFRHLALLADYMTYDGGYKPFNRTGLSGSPSPLLRASFETTASIIAEAALFGDFDDMKSP 1722
Query: 988 SARVMLGQECRQGTGLFQL 1006
++ +++G GTGLF +
Sbjct: 1723 ASSIVMGCVPEVGTGLFNV 1741
>gi|393244933|gb|EJD52444.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Auricularia delicata TFB-10046 SS5]
Length = 1718
Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust.
Identities = 301/683 (44%), Positives = 406/683 (59%), Gaps = 69/683 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL--- 69
+AEA+F+ N +QYLVP G PL GLIQDHV++G ++ ++TF TR EY L+Y AL
Sbjct: 676 RAEATFIANTDNQYLVPTSGKPLRGLIQDHVVAGLWMTSKNTFFTREEYHQLLYGALRPE 735
Query: 70 --CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHG-ELLSGILDKKQF 126
+ I TLPPTIWKP PLWTGKQV+ST++ N+TP + HG L S ++
Sbjct: 736 EDWMHTGRIETLPPTIWKPQPLWTGKQVISTILRNITPSNA----HGISLRSKCKISQEL 791
Query: 127 GSTQYGLVHAVW-----DTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAIS 181
+ G VW + V G++L G+LDK Q G++ YGL+H+ ++ +G E A
Sbjct: 792 WADYKG---PVWGKTQNEEEVIFLDGDMLCGVLDKSQLGASDYGLIHSAYELYGPEMAGR 848
Query: 182 LLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDT 241
LL ++L T YLQ FT + D+ + ++ ++ R K+IN A +G EA + +
Sbjct: 849 LLGIFSRLLTKYLQHRAFTCRMDDLALTEKGNKAREKLINDAWNMGHEATIASFPSLKEL 908
Query: 242 DPE----IISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNL 297
PE + S L+E + A +D K +T++I C+P+GL+ FP N++
Sbjct: 909 SPEEQDRTLPSLLREILRDDAKM-ALLDNSVKQRTQGLTSSIANECIPKGLLRKFPHNHM 967
Query: 298 QFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGR 357
Q M SGAKGS VN QISC LGQ ELEG+R +MVSG+TLPSF +E + AGG+V R
Sbjct: 968 QAMTLSGAKGSAVNARQISCGLGQQELEGRRVPVMVSGKTLPSFKAFETAAIAGGYVASR 1027
Query: 358 FMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSL 417
F+TG++PQEF+FHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEGL VHYD TVR SD SL
Sbjct: 1028 FLTGVRPQEFYFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLRVHYDHTVRGSDSSL 1087
Query: 418 IQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKH-PLSLALLLLLTFK 476
Q YG DGLDVTK+++L + D +K ++KV NL K+ AL +F
Sbjct: 1088 FQFFYGGDGLDVTKQKHL-------MVDPVKPGEAHKV--NLQKRFMNYEFALQNFKSFV 1138
Query: 477 SSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQ---PLISTFQPDAHFG 533
+ +P ++L+ + + K RK K A P+ P IST+ P A+ G
Sbjct: 1139 NRVRP------------VELV-KMLGVKKKVRKHMEKAL-ADPEAYDPTISTYNPVAYIG 1184
Query: 534 SISENLADSVVKYTK---------GRTDASH--------VDKFYDMIFYKNLLSLANPGE 576
S SE A + +Y K TDA H + F + + + SLA+PGE
Sbjct: 1185 STSERFARDLFEYIKKNPHKLIQDDSTDALHFPWKDLQNAETFSHFMNARYIRSLADPGE 1244
Query: 577 NVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFL 636
VG+LA+Q IGEPSTQMTLNTFH AG G NVTLGIPRLREI+M A+ KTP M +P L
Sbjct: 1245 AVGLLASQGIGEPSTQMTLNTFHLAGHGAANVTLGIPRLREIIMTASTKPKTPLMHLP-L 1303
Query: 637 PDMPKLEKKANRLAKSMTRITMA 659
D +E K ++ K+ R+T++
Sbjct: 1304 QDGVNME-KVDQFCKASNRLTLS 1325
>gi|388853445|emb|CCF52844.1| related to DNA-directed RNA polymerase I [Ustilago hordei]
Length = 1798
Score = 503 bits (1295), Expect = e-139, Method: Compositional matrix adjust.
Identities = 304/767 (39%), Positives = 422/767 (55%), Gaps = 109/767 (14%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S ++E ++ N +QYL P G+PL GLIQDHV++G ++ ++T TRAEY ++Y A
Sbjct: 711 SQAARSECYYVANTDNQYLTPTSGNPLRGLIQDHVVAGVWMTSKNTLYTRAEYQQMLYGA 770
Query: 69 L-----CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDK 123
L + T+PP + KP PLWTGKQV+STV++NL P + + K
Sbjct: 771 LRPEGKYTGGGRVLTVPPALLKPEPLWTGKQVISTVLLNLKPAKSDGLN-------LTSK 823
Query: 124 KQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLL 183
+ +G HA + V I GELL G+LDK FG++ YGLVHAV++ +G+E A LL
Sbjct: 824 AKVAGRMWGKDHA-NEEKVIIEDGELLQGVLDKAAFGASAYGLVHAVFEIYGSETAGKLL 882
Query: 184 SCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLP----- 238
S L++LFT +LQ F+ + D+L+ +E D R K ++ A+ G A +GL
Sbjct: 883 SILSRLFTKFLQTNAFSCRMDDLLLSKEGDEVRRKTLDAAQGQGKGVAMKTVGLEGEDEK 942
Query: 239 -LDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNL 297
DTD + +L+E + A +D + + + +T+ I + CLP GL + FP NN+
Sbjct: 943 NPDTDRNL-RIRLEEVLRDDDKL-AVLDGEMMNSSNALTSKIIESCLPAGLYKKFPENNM 1000
Query: 298 QFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGR 357
Q M SGAKGS VN QISCLLGQ LEG+R +MVSG++LPSF P+E S RAGGFV GR
Sbjct: 1001 QMMTGSGAKGSAVNVSQISCLLGQQALEGRRVPLMVSGKSLPSFRPFETSARAGGFVSGR 1060
Query: 358 FMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSL 417
F+TGI+PQE+FFHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEG+ + YD TVR++D S+
Sbjct: 1061 FLTGIRPQEYFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGVHIQYDNTVRNADGSI 1120
Query: 418 IQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKH-PLSLALLLLLTFK 476
+Q YGED LD TK +Y+ QF F N + N K++ P L+ ++
Sbjct: 1121 LQFAYGEDALDTTKSKYI--GQFDFTAANFE---------NYNKRYDPKQLSEVVEAELA 1169
Query: 477 SSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSIS 536
+ + PH KY P++S + P HFGS+S
Sbjct: 1170 AEHMKKALKKPH---------------------KY--------DPVLSVYTPSTHFGSMS 1200
Query: 537 EN----------------LAD--------------------SVVKYTKGRTDASHVDKFY 560
E LAD S V+ + + V+ F
Sbjct: 1201 EKYAKEIEAYIEKNPSKLLADKKKKSKKHKSEAEAGAQEEASTVEKLRFAKEKLGVEAFR 1260
Query: 561 DMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILM 620
M L +PGE VG+LAAQ +GEPSTQMTLNTFHFAG G NVTLGIPRLREI+M
Sbjct: 1261 AMCKVLYHRGLVDPGEAVGLLAAQGVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVM 1320
Query: 621 MATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEP--- 677
A++ IKTP M +P L + + K K +R+ ++ V+++ + E +ISP+
Sbjct: 1321 TASQNIKTPIMRLPVLDGITNDQIKT--FCKDGSRLVLSQVIDEAIVTE--KISPKSEST 1376
Query: 678 ----HMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAI 720
Y ++ F PA +++ + S I+ + F LE +I
Sbjct: 1377 GFHRQKTYTVRLNFYPAEECQEEYNCTTSHILRGLQETFAPNLENSI 1423
Score = 109 bits (272), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 86/140 (61%), Gaps = 1/140 (0%)
Query: 869 LKTDGINVNFISQYRH-LLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 927
L +GIN + + ++DL+ LY NDI + TYG+EAA I+ E++ +F YGI V
Sbjct: 1648 LTAEGINFRDLWDFGFGVVDLDNLYTNDIGAVLHTYGVEAARAAIVSEMRGIFDTYGIAV 1707
Query: 928 DPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAP 987
PRHL L+ADY T +G + NR+GI + S + K +FEM + I +++ G D L+ P
Sbjct: 1708 SPRHLFLIADYQTAAGGFRPFNRSGIAESSSTLLKASFEMTMAFIGGSALHGDVDMLKTP 1767
Query: 988 SARVMLGQECRQGTGLFQLR 1007
S+++++G+ GTG ++R
Sbjct: 1768 SSKLVVGRPVSSGTGTPEIR 1787
>gi|354545083|emb|CCE41808.1| hypothetical protein CPAR2_803580 [Candida parapsilosis]
Length = 1670
Score = 497 bits (1280), Expect = e-137, Method: Compositional matrix adjust.
Identities = 288/738 (39%), Positives = 425/738 (57%), Gaps = 73/738 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCI- 71
KAEA L N SQYL P G+PL GLIQDH+ +G L+ +D+F TR Y L+Y CI
Sbjct: 617 KAEALNLANTDSQYLTPTSGAPLRGLIQDHISAGVWLTSKDSFFTRETYQQLIYG--CIR 674
Query: 72 ------LNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQ 125
+ + TLPP I+KP LWTGKQV++T+++N+ P + + ++ K +
Sbjct: 675 PEDGHTTRSRLVTLPPAIFKPEMLWTGKQVITTILLNIKPDNVPGVN-------LISKNK 727
Query: 126 FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSC 185
+ +G H+ + V ++GELLSGILDK Q+G++Q+G+VH++ + +G E A LS
Sbjct: 728 IKNDYWG-EHST-ENEVIFKNGELLSGILDKSQYGASQFGIVHSLHEVYGPEVAGKALSV 785
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDT--DP 243
L +LFT Y+ FT G+ D+ + ++ + R I+ + +G +AA LP DT D
Sbjct: 786 LGRLFTNYIMMTAFTCGMDDLRLTEDGNVWRKDILKSSVDVGRQAATEVTNLPDDTGNDN 845
Query: 244 EIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVES 303
+ + +L+E + +D +S ++ +T+ + C+PEG ++ FP N++Q M S
Sbjct: 846 KELRRRLEEILRDDDKL-GILDAITQSKVNAITSQVVSKCVPEGTMKKFPYNSMQAMALS 904
Query: 304 GAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQ 363
GAKGS VN QI CLLGQ LEG+R +MVSG+TLPSF +E RAGG++ RF +GI+
Sbjct: 905 GAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKAFETDARAGGYIKQRFYSGIR 964
Query: 364 PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYG 423
PQE++FHCMAGREGLIDTAVKTSRSGYLQRCL K LEG+ V+YD +VRD D +LIQ LYG
Sbjct: 965 PQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVNYDNSVRDGDGTLIQFLYG 1024
Query: 424 EDGLDVTKRQYLTDKQFSF-LEDNIKWICSYK---VILNLLKKHPLSLALLLLLTFKSSG 479
D +D TK+ ++ QF F LE+ + Y ++ NL LS + + + K
Sbjct: 1025 GDSIDTTKQSHMN--QFEFCLENYDALLAKYNPGDMVENLDTTKALSYSKKVRKSLKKQK 1082
Query: 480 KPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENL 539
PH EQ + D P+I+T+ P + GS+SE
Sbjct: 1083 D-----VPH--------YEQEIKYD----------------PVINTYNPAKYLGSVSEKF 1113
Query: 540 ADSVVK--------YTKGRTDASHV-----DKFYDMIFYKNLLSLANPGENVGVLAAQSI 586
+ + K + + + +A KF ++ K + SL NPGE+VG++A+QSI
Sbjct: 1114 QEKMDKFVTSHPELFAQSKEEAKSTGKLTEKKFRALMQLKYMRSLINPGESVGIIASQSI 1173
Query: 587 GEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKA 646
GEPSTQMTLNTFHFAG G NVTLGIPR+REI+M A+ AIKTP M +P LPD+ +++A
Sbjct: 1174 GEPSTQMTLNTFHFAGHGAANVTLGIPRMREIIMTASAAIKTPQMTLPILPDVS--DEQA 1231
Query: 647 NRLAKSMTRITMADVLEKVKIKEWLEISPEP--HMNYQMKFCFIPAHMYRDKTSVKPSKI 704
+ KS+ ++ +++ ++ V + E + +Y + F Y + + ++
Sbjct: 1232 DAFCKSIAKVVLSEFVDNVTVTETTSQDEDGSNSRSYVIHLGFYTKDEYETEYDISQEQL 1291
Query: 705 IDHFERKFLKELEVAIAK 722
+ + F+ LE I K
Sbjct: 1292 ENVVTQSFIHSLETQIVK 1309
Score = 122 bits (307), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 108/213 (50%), Gaps = 37/213 (17%)
Query: 829 DVVNQHNIVHKYSYDKKNHMWC------------KLLFLPSNLFEE-------------- 862
+V+ QHN+V K+++D ++ WC KLL + N+ EE
Sbjct: 1450 EVIAQHNMVTKFNFDDEHGEWCEFKLELNGNETQKLLMV--NIVEELLRKTVVRQIPHIG 1507
Query: 863 ---------KESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVII 913
K +L T+G+N + + + +N + NDI + TYG+EAA I+
Sbjct: 1508 RCLRPEPDASSGKRILTTEGVNFKAMWEQDDFISVNAITSNDIASVLRTYGVEAARNTIV 1567
Query: 914 REVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIR 973
EV VF YGI V RHL L+AD MT G+Y+A NR GI + S KM++E + +
Sbjct: 1568 NEVYRVFDTYGISVSSRHLDLIADMMTREGSYLAFNRQGIDSSTSSFMKMSYETTCQFLT 1627
Query: 974 QASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+A + G + L +PSA++++G+ GTG F +
Sbjct: 1628 KAVLDGDREELESPSAKIVMGKLTNVGTGSFDI 1660
>gi|302901596|ref|XP_003048471.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256729404|gb|EEU42758.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 1674
Score = 497 bits (1279), Expect = e-137, Method: Compositional matrix adjust.
Identities = 360/1075 (33%), Positives = 537/1075 (49%), Gaps = 139/1075 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL--- 69
+AEA + + QYL G PL GLIQDH+ L RDTF +R +Y LVY AL
Sbjct: 645 RAEALQIADTDHQYLSYTAGKPLRGLIQDHISVSVALCNRDTFFSRGDYQQLVYNALRPE 704
Query: 70 --CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
I+ I + P + +P+ WTGKQV++T++ N+ P + G L + + Q
Sbjct: 705 SGHIVGERIELVAPAVIRPVARWTGKQVITTILKNMQPPN-----CGGLC--MRAETQIK 757
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
++Q+G + V + GE ++GILDK Q G + G+VHAV + +G A LLS L
Sbjct: 758 ASQWG--KDSEEGIVLFQDGEFITGILDKSQIGPSSGGVVHAVHEIYGPAIAGKLLSSLG 815
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL---PLDTDPE 244
+L T YL F+ G+ D+ + E ++ R + + A +G A + + L P DP
Sbjct: 816 RLLTRYLNVRAFSCGMDDLRLTPEGEKARREALVPANTVGLNVASSYVSLEQNPGPRDP- 874
Query: 245 IISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESG 304
++ +L+E + + +D K L +T+ + C+P GL +PFP N +Q M SG
Sbjct: 875 LLLERLEEVMRDDSK-QEGLDLLMKEGLSGITDKVQTSCVPNGLEKPFPKNQMQAMTTSG 933
Query: 305 AKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQP 364
AKGS VN ISC LGQ LEG+R +MVSG++LP F P+E RAGG++ RF+TGI+P
Sbjct: 934 AKGSRVNASLISCNLGQQVLEGRRVPIMVSGKSLPCFNPFETHARAGGYIVQRFLTGIRP 993
Query: 365 QEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGE 424
QE++FH MAGREGLIDTAVKTSRSGYLQRC++K +EGLTV YD TVRD+D S+IQ LYGE
Sbjct: 994 QEYYFHHMAGREGLIDTAVKTSRSGYLQRCVIKGMEGLTVAYDTTVRDADGSMIQFLYGE 1053
Query: 425 DGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFI 484
DGLDVTK++YL D FSF+ +N+ +S
Sbjct: 1054 DGLDVTKQKYLND--FSFILENV-----------------------------TSQAAQLK 1082
Query: 485 FSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKA----CPQPLISTFQPDAHFGSISENLA 540
+ P D L Q ++ K KK K KA PL S F P + SEN
Sbjct: 1083 YDPS----IGDRLGQHREVISKYMKKALKHVKAHDPKAQDPLSSMFNPATSAFATSENFY 1138
Query: 541 DSVVKYTKGRTDASHVDKF----------------YDMIF-YKNLLSLANPGENVGVLAA 583
++ Y K D DK +M+F K L SL PGE VG++A
Sbjct: 1139 QAMTSYLKENKDGLVRDKSDKKKHALSRVSLNRKNAEMLFAMKYLRSLVEPGEAVGIVAG 1198
Query: 584 QSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLE 643
QS+GEPSTQMTLNTFH AG NVTLGIPRLREILM A+ I TP+M + + +M +
Sbjct: 1199 QSVGEPSTQMTLNTFHLAGHSAKNVTLGIPRLREILMTASDKISTPAMSLYPIDEMSTAD 1258
Query: 644 KKANRLAKSMTRITMADVLEKVKIKEWLEISP--EPHMNYQMKFCFIPAHMYRDKTSVKP 701
A AKS++ + + +L+ + ++E + Y++ F + Y ++
Sbjct: 1259 --AETFAKSISVLPLGYILDSISVEEKVGRGKMYGSAKVYRVDLKFFASEEYTQTYAISV 1316
Query: 702 SKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMED-DVEDDEGEGAEGAGAALG 760
S ++D ERK L L +++ K K++ QS+ M ++ G A A
Sbjct: 1317 SDVMDAVERKLLHRL-LSLVK------KDIKKRQSQSTMATPEIGVKAGVVETAAPNAEA 1369
Query: 761 RVDVSSDEERDEEDAVQSHKKVNQEE-------DNDFEEPEDEERMSEREEDDNTSNIGE 813
D D++ ++DA + ++ N+ E D+D + + E ++ D IG
Sbjct: 1370 IRDEDDDDDEGDDDATNAKQRANRTEAVSYGPNDDDDDAVQQEMARDAADDMDEDEGIGG 1429
Query: 814 RFKIE----------FRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC-----------KL 852
++ S + V++ ++ V +++D K+ C K+
Sbjct: 1430 SPRLAPVDDDDDDDGIDWSAKARTERVLDSYSEVTDFTFDAKSGSDCSFTLEFDSTIPKV 1489
Query: 853 LFLPSNLFEEKESKHLLK-TDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRV 911
L L NL ++ K +++ G+ + + + ++ VN + M +R+
Sbjct: 1490 LML--NLVQDAVKKTVIQEISGVGACTFVEEKGVHVIHTAGVN-LQAMQRYSDFIDPHRI 1546
Query: 912 IIREVKNVFAVYGIE--------------------VDPRHLSLVADYMTHSGTYVAMNRN 951
++ V AVYG+E VD RHL+L+ D+MT +G + NR
Sbjct: 1547 QTNDIAAVLAVYGVEAARSNIVQELAGVFGSHGIKVDNRHLNLIGDHMTRNGGFTPFNRM 1606
Query: 952 GIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
G++ N S KM+FE L ++ A + G D L PS R ++G+ + GTG F +
Sbjct: 1607 GLKGNVSPFTKMSFETTLSFLKDAVLDGDWDDLATPSGRSVMGKLGKVGTGGFDV 1661
>gi|296822244|ref|XP_002850253.1| RNA polymerase I largest subunit [Arthroderma otae CBS 113480]
gi|238837807|gb|EEQ27469.1| RNA polymerase I largest subunit [Arthroderma otae CBS 113480]
Length = 1680
Score = 494 bits (1271), Expect = e-136, Method: Compositional matrix adjust.
Identities = 299/740 (40%), Positives = 422/740 (57%), Gaps = 73/740 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA L + QYLV G PL GLIQDH+ G L+ RD+F +Y L+Y L
Sbjct: 654 RAEAMQLADTDHQYLVATSGKPLRGLIQDHLSMGVWLTCRDSFFDEDDYHQLLYSCLRPE 713
Query: 73 NT-----EIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
N+ +I +PP I+KP PLWTGKQ++STV+ N+TP ++ + LD K
Sbjct: 714 NSHTVSDKIWLIPPAIFKPRPLWTGKQIISTVLKNITPDNRAGLN--------LDSKSST 765
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
+A D VT+R GEL+SGILDK Q G T GL+H++ + +G A L+ L
Sbjct: 766 PGNRWGDNAEGD--VTVRDGELISGILDKNQLGPTVGGLIHSIHEVYGHIVAGKLIGILG 823
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPL----DTDP 243
+L T L FT G+ D+ + +E + KR K+I +A LG E A + L D D
Sbjct: 824 RLLTKVLHMRAFTCGMDDLRLTEEGNAKRKKLIQQADNLGNEIALKYVTLDENKVEDEDA 883
Query: 244 EIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVES 303
E+ +L+E + A +D YKS ++++ I + CLP GL +PFP NN+Q M S
Sbjct: 884 EL-KRRLEEVLRDDDK-HAGLDGMYKSRTGELSSEITKACLPSGLEKPFPFNNMQTMTVS 941
Query: 304 GAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQ 363
GAKGS VN ISC LGQ LEG+R +M+SG+TLPSF PYE AGG+V GRF+TGI+
Sbjct: 942 GAKGSMVNANLISCNLGQQVLEGRRVPVMISGKTLPSFQPYETKIGAGGYVFGRFLTGIK 1001
Query: 364 PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRD-SDLSLIQVLY 422
P E++FH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL YD +VRD SD S++Q LY
Sbjct: 1002 PHEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKAEYDTSVRDTSDGSVVQFLY 1061
Query: 423 GEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPN 482
GEDGLD+TK+++L F+FL N I S + K S K +
Sbjct: 1062 GEDGLDITKQKHL--DSFTFLAQNYMSIVSQ------------------VNGVKDSSKIH 1101
Query: 483 FIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADS 542
+ + K M +++ ++D K P ++ F P A++GS SE A +
Sbjct: 1102 SEEASNWNKAAMKKIKKTGKIDAK-------------DPALALFPPGANYGSTSEKFASA 1148
Query: 543 VVKYTKGRTDASHVDK-----------FYDMIFYKNLLSLANPGENVGVLAAQSIGEPST 591
+ KY K D +K F M+ K + S+ +PGE +G++A QS+GEPST
Sbjct: 1149 LKKYMKTNPDNLLKEKSKAEGEISKKAFTTMMNIKYMKSVIDPGEAIGIVAGQSVGEPST 1208
Query: 592 QMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAK 651
QMTLNTFH AG NVTLGIPRLREI+M A+ I TP+M + + + K A AK
Sbjct: 1209 QMTLNTFHLAGHAAKNVTLGIPRLREIVMTASNHIMTPTMTLKLNKETDR--KTAELFAK 1266
Query: 652 SMTRITMADVLEKVKIKEWLEISPEPHMN-YQMKFCFIPAHMYRDKTSVKPSKIIDHFER 710
++T++T+A+V++K+K++E + Y ++ F P+ Y + +++ + ++ E
Sbjct: 1267 AITKLTLAEVVDKLKVRERVSSKGNAKAKVYDIQIDFFPSEAYCAEYAIQINDVLRTLEE 1326
Query: 711 KFLKEL----EVAIAKRAAQ 726
KF+ L E+ + KR A+
Sbjct: 1327 KFVPRLVKLTELELKKRTAE 1346
Score = 108 bits (270), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 97/155 (62%), Gaps = 5/155 (3%)
Query: 853 LFLPSNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVI 912
+++P+ + E +H+L T+G+N+ + Y+ ++D + +Y N + +M YG+EAA I
Sbjct: 1525 VYVPA---DRDEPEHVL-TEGVNLIAMRDYQDIIDPHSIYSNSVSHMLGLYGVEAARATI 1580
Query: 913 IREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEK 971
+ EV VF +GI+VD RHL+L+AD MT +G Y NR GI + + S + KM+FE +
Sbjct: 1581 VNEVGAVFDGHGIKVDNRHLTLIADVMTQTGGYRPFNRMGIVKDSTSPLMKMSFETTVRF 1640
Query: 972 IRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+R A ++ D+L PS+R+++G+ GTG F +
Sbjct: 1641 LRDAVLERDWDNLNGPSSRIVVGRVGTVGTGAFDV 1675
>gi|321257682|ref|XP_003193673.1| DNA-directed RNA polymerase I 190 kDa polypeptide [Cryptococcus
gattii WM276]
gi|317460143|gb|ADV21886.1| DNA-directed RNA polymerase I 190 kDa polypeptide, putative
[Cryptococcus gattii WM276]
Length = 1726
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 299/743 (40%), Positives = 413/743 (55%), Gaps = 84/743 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA + N +QYLVP G PL GLIQDHV++G + + +F TR +Y L+Y AL
Sbjct: 697 RAEAQMIANTDNQYLVPTSGGPLRGLIQDHVVAGVWMCNKSSFFTREQYFQLIYGALRTE 756
Query: 73 N-----TEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
N + I LPP I+KP PLWTGKQ++ST++ NLTP + + L S + +
Sbjct: 757 NNYTGRSRIIILPPAIFKPKPLWTGKQIMSTILANLTPFNAKGL---NLTSRNKVQNKLW 813
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
A+ + +V G L+ G+LDK Q+G++ YGLVH+V + +G A LL L+
Sbjct: 814 RRDDSSDPAMSEENVVFLDGHLVCGVLDKSQYGASGYGLVHSVHELYGPYVANRLLGVLS 873
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDT---DPE 244
+L T YLQ F+ + D+++ E ++ R I++KA G AA +GLP + DP+
Sbjct: 874 RLLTKYLQHDAFSCRMDDLILTAEGEKIRKDILDKASGDGAVAAMKYVGLPEGSTIEDPD 933
Query: 245 I---ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMV 301
++ +L+E A +D +S +K T+ IN LP+ L+ PFP NN+Q M
Sbjct: 934 TAKNLAIRLEEILRD-DHLMAGLDAVMQSAFNKTTSKINNDVLPDHLVRPFPDNNMQMMT 992
Query: 302 ESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTG 361
SGAKGS VN QIS LLGQ LEG+R MVSG+TLPSF ++ S RAGG+V RF+TG
Sbjct: 993 ISGAKGSKVNASQISTLLGQQALEGRRVPTMVSGKTLPSFKAFDTSARAGGYVANRFLTG 1052
Query: 362 IQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVL 421
I+PQE++FHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEG+ VHYD TVRDSD S++Q L
Sbjct: 1053 IRPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGVKVHYDHTVRDSDSSVLQFL 1112
Query: 422 YGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKK-HPLSLALLLLLTFKSSGK 480
YGED LDVTK+ +L +F F N L+LL K P +A GK
Sbjct: 1113 YGEDSLDVTKQTHLN--KFDFAAAN---------HLSLLNKVRPGDIA----------GK 1151
Query: 481 PNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQ--PLISTFQPDAHFGSISEN 538
+ D+A +K K + P +S + P + GS+SE
Sbjct: 1152 ----------------------VSDEALSHMKKALKKPHKHVPALSEYSPSRYIGSMSEA 1189
Query: 539 LADSVVKYT----------KGRTDASHV-------DKFYDMIFYKNLLSLANPGENVGVL 581
A + Y KG AS +F + + + SL PGE VG+L
Sbjct: 1190 YAKKLNNYIEDNKLGYIAKKGENKASPYTSERIPEKEFLGLARARYMRSLVEPGEAVGLL 1249
Query: 582 AAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPK 641
A+Q +GEPSTQMTLNTFH AG G NVTLGIPRLREI+M A+ TP+M++P +
Sbjct: 1250 ASQGVGEPSTQMTLNTFHLAGHGAANVTLGIPRLREIVMTASSKPTTPTMKLPLREHIS- 1308
Query: 642 LEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFC----FIPAHMYRDKT 697
+K K ++R+T+++V+E+V + E L + Q K+ F P Y +
Sbjct: 1309 -DKDIETFVKQVSRLTLSEVVERVTVTERLSSKSSETDSRQRKYTVLLEFYPPEEYGTEY 1367
Query: 698 SVKPSKIIDHFERKFLKELEVAI 720
+ P ++ + F L+ I
Sbjct: 1368 EITPEQLHESLAWNFAPRLKKEI 1390
Score = 119 bits (299), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 115/207 (55%), Gaps = 14/207 (6%)
Query: 806 DNTSNIGERFKIEFRDST-NVFVKDVVNQ---HNIVHKYSYDKKNHMWCKLLFLPSNLFE 861
D S +F +EF S + + D++ + +VH+ +N C +F F
Sbjct: 1524 DGHSGKSAQFDLEFPASAPKLLLVDIIERTCRAAVVHEI----ENIGRCMKIFSDKGEFT 1579
Query: 862 EKESKHLLKTDGINVNFI-SQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 920
L T+G N+ + + L+DL++L NDI+ + +T+G+EAA R II EV +VF
Sbjct: 1580 RS-----LITEGSNLRGMWALADELVDLDRLSSNDIYAILTTFGVEAARRAIIDEVSSVF 1634
Query: 921 AVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGR 980
YGI VD RHL+++ADYMTH+G + NR GI S + K +FE + + +A++ G
Sbjct: 1635 GAYGIAVDYRHLTIIADYMTHAGGFRPFNRTGISAKSSPLLKASFETTVAFLSEATLHGD 1694
Query: 981 EDSLRAPSARVMLGQECRQGTGLFQLR 1007
D L +P+A++++G+ GTG F +R
Sbjct: 1695 FDDLTSPAAKIVMGKPSASGTGAFDIR 1721
>gi|154276528|ref|XP_001539109.1| hypothetical protein HCAG_06714 [Ajellomyces capsulatus NAm1]
gi|150414182|gb|EDN09547.1| hypothetical protein HCAG_06714 [Ajellomyces capsulatus NAm1]
Length = 1573
Score = 490 bits (1261), Expect = e-135, Method: Compositional matrix adjust.
Identities = 352/1054 (33%), Positives = 541/1054 (51%), Gaps = 143/1054 (13%)
Query: 43 VISGAKLSLRDTFLTRAEYMNLVYQALCILNT-----EIRTLPPTIWKPMPLWTGKQVLS 97
I+ LS + + R+ L+Y L N+ +I + P I +P LWTGKQV+S
Sbjct: 568 AIANMLLSPSNFKMKRSRSKKLLYNCLRPENSLTVTDKILLMKPAILRPRKLWTGKQVIS 627
Query: 98 TVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKK 157
T+++N+TP+ +G L+G K + ++G + V R GELL GILD
Sbjct: 628 TIMMNITPER----FYGLNLTG---KSRTSGDRWG--EGSEEGQVIFRDGELLCGILDSA 678
Query: 158 QFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRT 217
Q G + GL+H+V + +G A LL L +L T +L FT G+ D+ + ++ + R
Sbjct: 679 QLGPSPGGLIHSVHEIYGHVVAGKLLGVLGRLLTKFLHMRAFTCGIDDLRLTKKGNEDRR 738
Query: 218 KIINKARRLGTEAACNALGL---PLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDK 274
K + +A +G A + L + + + +L++A + +A +D S
Sbjct: 739 KKLQEAEHIGRHVALKYVTLDQTKFEDEEAELKRRLEDALRD-DEKQAGLDAVLNSQAAD 797
Query: 275 VTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVS 334
++++I CLP GL +PFP N +Q M SGAKGS VN ISC LGQ LEG+R +M+S
Sbjct: 798 ISSDITAACLPVGLEKPFPWNQMQTMTTSGAKGSVVNANLISCNLGQQVLEGRRVPVMIS 857
Query: 335 GRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRC 394
G+TLPSF P++ + A GFV GRF+TGI+PQE++FH MAGREGLIDTAVKTSRSGYLQRC
Sbjct: 858 GKTLPSFRPFDTNLMASGFVSGRFLTGIKPQEYYFHAMAGREGLIDTAVKTSRSGYLQRC 917
Query: 395 LVKHLEGLTVHYDMTVRDS-DLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSY 453
L+K +EGL YD +VR++ D S++Q LYGEDGL++TK+++L D F FL N +
Sbjct: 918 LIKGMEGLKAEYDNSVRETADGSVMQFLYGEDGLEITKQKHLQD--FPFLAHNF-----W 970
Query: 454 KVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRK 513
V+ L +G F + D W + A KKYRK
Sbjct: 971 SVVEEL------------------NGSDEF------NRVKSDKAGDW---NRHAIKKYRK 1003
Query: 514 KFKA-CPQPLISTFQPDAHFGSISENLADSVVKYTKGRTD-----ASHVDK------FYD 561
K C P +S F P + +GS SE A ++ Y K D V+K F
Sbjct: 1004 TGKLDCVDPALSLFPPGSCYGSTSETFAMALKLYQKENPDQILKEKGKVEKGISKKDFAR 1063
Query: 562 MIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMM 621
++ K + S+ PGE+VG++A QSIGEPSTQMTLNTFH AG NVTLGIPRLREI+M
Sbjct: 1064 VMNLKYMRSVVEPGESVGIVAGQSIGEPSTQMTLNTFHLAGHSAKNVTLGIPRLREIVMT 1123
Query: 622 ATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMN- 680
A+ I TP+M ++ EK AK+++++T+A+V++ +++ E + M
Sbjct: 1124 ASNQILTPTMTGVLRKEL--TEKDGRIFAKAISKLTIAEVVDTLRVHERVSSGSSHGMAK 1181
Query: 681 -YQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKEL----EVAIAKR------AAQGLK 729
Y ++ F P Y ++ +++ I+ + KF+ L + KR +A
Sbjct: 1182 IYDLEIDFFPPEEYTEEYAIQIEDILKTLQHKFVPRLIKLTRAELKKRTDEKSLSAFSAA 1241
Query: 730 NMNIEQSRDQMEDDVE----------------DDEGEGAEGAGAALGRVDVSSDEERD-- 771
+I S +E+ +++ + A+ A + + R + S E D
Sbjct: 1242 QPDIGTSTGVVEEPTRRFGHEARDADADDDDDEEDQDDAKRAMSHMNRSNQVSYEAPDDG 1301
Query: 772 EEDAVQSHKKVNQEEDNDFEEPEDEERMSERE-------EDDNTSNIGERFKIEFRDSTN 824
EED ++ +QE D+D +E D E +D +T + E+ + + + S +
Sbjct: 1302 EEDIIRGQD--SQEPDSDSDEETDGNHHGEHAATEDVDMQDTDTGSDSEKLQ-KSKQSED 1358
Query: 825 VFVKDVVNQHNIVHKYSYDKKNHMWC-----------KLLFLP----------------- 856
+ ++ + K+ + K C KLL LP
Sbjct: 1359 T----ITGKYAEITKFKFSLKKGKSCHIQLRYDISTPKLLLLPLVEDAARTSVIQFIKGL 1414
Query: 857 ---SNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVII 913
S + ++E+ + TDG+N+ + +Y+ + + LY N I M YG+EAA II
Sbjct: 1415 GACSYIEGDRENPAHIVTDGVNLLAMREYQDFVYPHSLYTNSIADMLVMYGVEAARACII 1474
Query: 914 REVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNG-IRLNPSFIQKMTFEMPLEKI 972
RE+ VF + I VD RHL+L+ D MTH+G++ A NR G ++ + S KM+FE + +
Sbjct: 1475 REMAAVFDGHSISVDNRHLNLIGDVMTHAGSFRAFNRMGLVKDSTSPFMKMSFETTVGFL 1534
Query: 973 RQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
R A ++ D+L PS+R+++G+ GTG F +
Sbjct: 1535 RDAVLERDCDNLNGPSSRIVMGRVGTVGTGAFDV 1568
>gi|66819721|ref|XP_643519.1| RNA polymerase I, largest subunit [Dictyostelium discoideum AX4]
gi|74860727|sp|Q86H36.1|RPA1_DICDI RecName: Full=DNA-directed RNA polymerase I subunit rpa1; Short=RNA
polymerase I subunit A1; AltName: Full=DNA-directed RNA
polymerase I largest subunit; AltName: Full=DNA-directed
RNA polymerase I subunit A
gi|60471674|gb|EAL69630.1| RNA polymerase I, largest subunit [Dictyostelium discoideum AX4]
Length = 1615
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 283/681 (41%), Positives = 405/681 (59%), Gaps = 70/681 (10%)
Query: 25 QYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCILNTE--IRTLPPT 82
QYLVP++G+PL GLIQDH+++G L+ RDT T+A++ ++Y + +NT+ I T PP
Sbjct: 622 QYLVPRNGAPLRGLIQDHILTGVLLTKRDTLFTKADFQAILYASCWSVNTKHPIVTPPPC 681
Query: 83 IWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYGLVHAVWDTHV 142
I KP+PLW+GKQ++S + LT + + E S I K +G+ GL D+HV
Sbjct: 682 ILKPVPLWSGKQLISAALNQLTIGRAPL--NLEAPSKI-PTKMWGTK--GL-EITRDSHV 735
Query: 143 TIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLG 202
IR E+++GILDK FG++ YGLVH ++ + + A SLL+ L ++FT YLQ GFT G
Sbjct: 736 IIRQNEMVAGILDKGHFGASSYGLVHTCYELYDPDVAGSLLTLLGRMFTNYLQSRGFTCG 795
Query: 203 VRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQEAYASIPQFRA 262
V D+L++ + ++ R + + KA G A L D + +A S + A
Sbjct: 796 VDDLLMKNKEEKFRVETLKKANEEGYTVAAKFADLS-KYDEQKARDFFSKALQSEREV-A 853
Query: 263 QIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQI 322
++D K L++ T+ + +P G +PFP NN M SGAKGS VN Q+SCLLGQ
Sbjct: 854 RLDGLLKKGLNQYTSKVIDTLIPGGQQKPFPKNNFSLMTVSGAKGSVVNFSQVSCLLGQQ 913
Query: 323 ELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTA 382
ELEGKR MVSG+TLPSF Y+ S RAGGFV RF+TG++PQ++FFHCMAGREGLIDTA
Sbjct: 914 ELEGKRVPRMVSGKTLPSFQAYDASARAGGFVMDRFLTGVRPQDYFFHCMAGREGLIDTA 973
Query: 383 VKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSF 442
VKTSRSGYLQRCL+KHLEGL+V YD TVR+SD S+IQ YGED L++ K YLT +F
Sbjct: 974 VKTSRSGYLQRCLIKHLEGLSVQYDNTVRESDGSVIQFNYGEDSLEIGKTPYLT--KFPI 1031
Query: 443 LEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQ 502
+ +N + FKS +F M+ L + Q
Sbjct: 1032 IAENYEL-------------------------FKS-------------QFPMEQLIE--Q 1051
Query: 503 LDDKARKKYRKKFKACPQ--PLISTFQPDAHFGSISENLADS-----------VVKYTKG 549
L ++ +Y + K P+ P++S F P + G +SE+ + ++K T
Sbjct: 1052 LKNQEVVEYNRSIKTQPELDPVMSKFNPSSDLGCVSESFMNQLNHYIESNPQKLIKTTSN 1111
Query: 550 RTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVT 609
R + F ++++ S+ +PGE+VG+L AQSIGEPSTQMTLNTFH AGRG+ NVT
Sbjct: 1112 RDGKINEKDFRNLMYLYYSRSMVSPGESVGLLCAQSIGEPSTQMTLNTFHLAGRGEANVT 1171
Query: 610 LGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKE 669
LGIPRLRE++M AT TP ME K+E + ++AK + + ++D+++ + ++E
Sbjct: 1172 LGIPRLRELIMTATTKPITPLMEFQINDSTNKVETE--KMAKYLEILKLSDIIKDITVQE 1229
Query: 670 WLEISPEPHMNYQMKFCFIPA 690
+ + + + NY ++ FIP
Sbjct: 1230 YFQ---DTNRNYDIEIEFIPT 1247
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/143 (41%), Positives = 94/143 (65%)
Query: 864 ESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
++ + ++++G+N++ I + R L ++++Y NDI+ + YG+EA + + E+ NVFA Y
Sbjct: 1468 KTHYSIQSEGVNLSEIFELRDKLKIDEIYTNDIYAILQKYGVEACRQAVTSEISNVFAAY 1527
Query: 924 GIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDS 983
GI VD RHL L+ DYMT G Y A+NR GI N S QKM+FE + +AS+ G D+
Sbjct: 1528 GISVDKRHLILLGDYMTFEGGYRALNRIGIENNTSPFQKMSFETTFSFLSKASLMGDYDT 1587
Query: 984 LRAPSARVMLGQECRQGTGLFQL 1006
+ +PS+R++LGQ + GTG F +
Sbjct: 1588 VTSPSSRIVLGQIVKNGTGSFTI 1610
>gi|440635899|gb|ELR05818.1| hypothetical protein GMDG_01895 [Geomyces destructans 20631-21]
Length = 1708
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 279/733 (38%), Positives = 413/733 (56%), Gaps = 67/733 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL--- 69
+AEA + + QYL G PL GLIQDH+ ++ RDTF RA Y LVY L
Sbjct: 663 RAEALQIADTDHQYLAATAGKPLRGLIQDHISVSVWMTNRDTFFDRATYQQLVYNCLRPE 722
Query: 70 --CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
I+ I T+PP I KP P WTGKQ+++T++ N+TP G ++ K Q
Sbjct: 723 SGHIIGERIETVPPAIIKPFPQWTGKQIITTILKNITP-------LGYTSLNLISKSQVP 775
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
+ ++G + V + GEL++GILDK Q G + GL+H++ + HG A +LS L
Sbjct: 776 ADRWG--PKSEEGQVLFQDGELITGILDKSQLGPSGGGLIHSLHEAHGPTVAGKMLSILG 833
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL----PLDTDP 243
+L T +L F+ G+ D+L+ E ++ R + + +G E A + L P DP
Sbjct: 834 RLLTKFLHIRAFSCGMEDLLLTSEGEKTRREKLKDVHLIGLEVAAKYVTLEDRKPTANDP 893
Query: 244 EIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVES 303
E+ ++L++ + + +D +K+++ I + CLP GL++ FP N +Q M S
Sbjct: 894 EL-RNRLEDVLRDDTK-QEGLDVMMNGSSNKLSSEITKACLPHGLVKQFPKNQMQNMTVS 951
Query: 304 GAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQ 363
GAKGS VN ISC LGQ LEG+R +MVSG++LP F P+E + RAGG++ RF+TGI+
Sbjct: 952 GAKGSAVNANLISCNLGQQVLEGRRVPVMVSGKSLPCFKPFETNVRAGGYIANRFLTGIR 1011
Query: 364 PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYG 423
PQE++FH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL V YD +VRDSD S++Q LYG
Sbjct: 1012 PQEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKVEYDTSVRDSDGSMVQFLYG 1071
Query: 424 EDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNF 483
EDGLDVTK ++LTD F FL NI+ + + + + L+
Sbjct: 1072 EDGLDVTKTKHLTD--FKFLLQNIESVVAQMKLGDDLE---------------------- 1107
Query: 484 IFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSV 543
+ H+ E+ ++ + K + P+++ + P H S SE+ S+
Sbjct: 1108 VIGEHQ--------EKIQKMMKRGIKTAKANTADVSDPVLAHYHPGRHLYSTSESFNRSL 1159
Query: 544 VKY----------TKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQM 593
Y +KG +A + ++ K L S+ PGE VG++A QSIGEPSTQM
Sbjct: 1160 SSYIKENPDGLIKSKGNPNAYSKKELGPILNVKYLKSVVEPGEAVGIVAGQSIGEPSTQM 1219
Query: 594 TLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSM 653
TLNTFH AG NVTLGIPRLREI+M A+ I TPSM + +M E+ + AK +
Sbjct: 1220 TLNTFHLAGHSAKNVTLGIPRLREIVMTASNNISTPSMTLQVNEEM--TEEAGQKFAKGI 1277
Query: 654 TRITMADVLEKVKIKEWL--EISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERK 711
+++++A+VL++ + E + S Y + F P Y+D ++ + +I E+K
Sbjct: 1278 SKLSLAEVLDEASVSERIGRGTSQSRAKIYDINLKFFPPQEYKDTYAIDVADVISTLEKK 1337
Query: 712 FLKELEVAIAKRA 724
F+ +L+ ++A++A
Sbjct: 1338 FVPKLQ-SLARKA 1349
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 83/134 (61%)
Query: 873 GINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHL 932
G+N+ + Y ++ NK+ NDI M YG+EA II+E+ VF +GI VD RHL
Sbjct: 1559 GVNLKAMQMYSDYINPNKISTNDIAAMLEHYGVEACRATIIQELSGVFGGHGIAVDNRHL 1618
Query: 933 SLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVM 992
+L+AD+MT G + NRNG++ + S KM+FE + ++ A M G D LR+PSAR++
Sbjct: 1619 NLIADFMTRGGGFSPFNRNGLKGSVSPFLKMSFETTIGFLKDAVMDGDWDDLRSPSARIV 1678
Query: 993 LGQECRQGTGLFQL 1006
+G+ + GTG F +
Sbjct: 1679 IGRTSKVGTGAFDV 1692
>gi|449017030|dbj|BAM80432.1| RNA polymerase I largest subunit [Cyanidioschyzon merolae strain 10D]
Length = 1607
Score = 483 bits (1244), Expect = e-133, Method: Compositional matrix adjust.
Identities = 354/1079 (32%), Positives = 518/1079 (48%), Gaps = 167/1079 (15%)
Query: 14 AEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCILN 73
AEA +L+ + YL P G+P+ GLIQDHV++ L+ RD F + EY L+Y A L
Sbjct: 608 AEAEYLLRIDFHYLSPTAGAPVRGLIQDHVLAAVLLTQRDRFFSWEEYSELIYAATARLW 667
Query: 74 TEIRT------------------LPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGE 115
R +PP I P WTGKQVLSTV+ + RH +
Sbjct: 668 ERKRGTEGTAPGSALGPFTVCADVPPAILYPQQYWTGKQVLSTVLGIVAHLADPENRHRK 727
Query: 116 LLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHG 175
L + + + S +G A ++ V IR GELL G++DK Q G+ +GLVH V +G
Sbjct: 728 LR--MQSRAKVSSAFWGQ-SASEESIVIIRDGELLQGVVDKAQIGAAPFGLVHCVHALYG 784
Query: 176 AEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKAR-RLGTEAACNA 234
E A LLSCL +L T++L+R G + GV D+L+ +R R +++ + +G+
Sbjct: 785 PEAACDLLSCLGRLLTIFLRRHGHSTGVEDLLLLPSTERIRWEMLKDTQITVGSRVLRRV 844
Query: 235 LGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLD--------KVTNNINQVCLPE 286
LGLP D + L+ A A R + R+ + LLD + +N+++ C+P
Sbjct: 845 LGLPADG-----TVDLEHALAE--ALRTERGRELELLLDMEMKKELASIASNVSEHCIPA 897
Query: 287 GLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEV 346
GL +PFP N M SGAKGS VN QISCLLG L+G+R V+G TLP F PYE
Sbjct: 898 GLRKPFPNNGFALMTASGAKGSQVNAAQISCLLGSTVLDGRRVPRSVAGWTLPCFRPYES 957
Query: 347 SPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHY 406
+ AGGF+ RF+TG+ P E+FFHCMAGREGL DTAVKT+RSGYLQRCLVK LEG+T+ Y
Sbjct: 958 TALAGGFIASRFLTGLSPPEYFFHCMAGREGLTDTAVKTARSGYLQRCLVKALEGVTIAY 1017
Query: 407 DMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLS 466
D TVR+SD S+I QF + ED + + L+
Sbjct: 1018 DGTVRESDGSII--------------------QFCYGEDGLDPCQAL-----WLQHRAEF 1052
Query: 467 LALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTF 526
+A+LL +S+GK ++ +K A +S
Sbjct: 1053 MAILLADGTRSAGK----------------------FASQSPSNATRKSNA-----VSAA 1085
Query: 527 QPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSI 586
+ A + S L ++++ + D +H + +Y S A PG+ VGV+AAQSI
Sbjct: 1086 EVCATHSASSPKLPPALLEMYE-TLDEAHRSALLE--WYTR--STAAPGDAVGVIAAQSI 1140
Query: 587 GEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKA 646
GEPSTQMTLNTFHFAG G +VT G+PRLRE+LM A TP M+IPF ++
Sbjct: 1141 GEPSTQMTLNTFHFAGIGVEHVTAGVPRLRELLMFPGSAPATPFMQIPF-------KEGV 1193
Query: 647 NRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCFI----PAHMYRDKTSVKPS 702
+R T + V + I N ++ I ++ + P+
Sbjct: 1194 SRERAVATCYALRSVRLRDLILRLQLRLQGAKRNERVHLTLIMVLAEPELWTQVLGISPN 1253
Query: 703 KIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAAL--- 759
+ ++ + L+ IA+R + L + S ++ + D GE +
Sbjct: 1254 NVQAATKKTYGPVLKALIARRLRE-LDSQQTWSSSSVTLNEKDQDSGEPEAPVETEMLDA 1312
Query: 760 GRVDVSSDEERDE---EDAVQSHKKVNQEEDNDFE---EPEDEERMSEREEDDNTSNIGE 813
G D SS+ D ++ + + + +Q+E ++ E E E+++ R+ +D
Sbjct: 1313 GLSDTSSESSADSVPADNELVARRSTDQDESSELSVDSESEGLEKIASRDHND------- 1365
Query: 814 RFKIEFRDSTNVFVKDVV----------NQHNIVHKYSYDKKNHM--------WCKLLF- 854
E R T V D + +V ++ + M W L
Sbjct: 1366 ----EIRSKTTVAPGDTPCLPQVPDAPEDNDAVVVRFPSPNRVEMSLWLPSAAWYTLFLD 1421
Query: 855 ---------LPSNLFEEKESKHL---------LKTDGINVNFI-SQYRHLLDLNKLYVND 895
+P E + L L+T+G N+ + LDL+ L+ N
Sbjct: 1422 ELALAAAERVPVRAVENIRNTTLTTREDGGIALRTEGSNIRLAWTLSDDELDLDGLFSNH 1481
Query: 896 IHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRL 955
I + S YGIEAA ++RE++ VFA YGI VD RHLSL+ADY T G +R G+R+
Sbjct: 1482 ISEVLSVYGIEAARARLVRELQTVFAAYGIAVDYRHLSLIADYQTALGACRPFSRTGMRM 1541
Query: 956 ---NPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNREK 1011
PS +Q+M+FE + +R A++ ED L + SAR+ LGQ QGTG+F + E+
Sbjct: 1542 LDSVPSALQRMSFESASQFLRDAALAREEDQLESASARLCLGQVVSQGTGMFSVLASER 1600
>gi|443920271|gb|ELU40225.1| RNA polymerase I largest subunit [Rhizoctonia solani AG-1 IA]
Length = 2541
Score = 483 bits (1243), Expect = e-133, Method: Compositional matrix adjust.
Identities = 321/861 (37%), Positives = 447/861 (51%), Gaps = 144/861 (16%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
+H ++EA + N +QYL G PL GLIQDHV++G ++ + T +R EY L+Y A
Sbjct: 1461 NHVARSEAIHIANTDNQYLAATSGDPLRGLIQDHVVAGVWMTNKSTMFSREEYYQLLYGA 1520
Query: 69 LCILN-----TEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDK 123
L N ++TLPP IWKP PLWTGKQ++ST+++N+TP + G L ++ K
Sbjct: 1521 LRPENDYSGQGRVKTLPPAIWKPKPLWTGKQIISTLLLNITPPNA-----GGLT--LISK 1573
Query: 124 KQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLL 183
+ G+ +G H+ +T V GELL G+LDK QFG++ YGLVH+V++ +GAE A LL
Sbjct: 1574 GKVGNEHWG-PHSKEET-VLFYDGELLCGVLDKSQFGASSYGLVHSVYELYGAETAGRLL 1631
Query: 184 SCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDP 243
S L++LFT +LQ FT + D+ + E D +R+KI+ A+ G EAA ++ P
Sbjct: 1632 SILSRLFTKFLQHRAFTCRMDDLALTPEGDARRSKILRDAQTFGYEAA-------VENFP 1684
Query: 244 EIISSQLQEAYASIPQF----------RAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFP 293
+ + +E +P A +D K + VT ++ + C+P GL+ FP
Sbjct: 1685 SLDGASPEECARRLPILLEEVLRDDAKMANLDLTVKKKMTAVTESVTKTCMPHGLLRKFP 1744
Query: 294 ANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGF 353
N++Q M SGAKGS VN QISC LGQ ELEG+R MVSG+TLPSF P+E + AGG+
Sbjct: 1745 DNHMQTMTMSGAKGSAVNARQISCGLGQQELEGRRVPTMVSGKTLPSFKPFETAAIAGGY 1804
Query: 354 VDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDS 413
+ RF+TGI+PQEF+FHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEGL VHYD TVR S
Sbjct: 1805 IASRFLTGIRPQEFYFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLKVHYDGTVRGS 1864
Query: 414 DLSLIQVLYGEDGLDVTKRQY----------LTDKQFSFLEDNIKWICSYKVILNLLKKH 463
D +++Q YG DGLDVT++++ L D+ F F N + + + LN+L
Sbjct: 1865 DSAVLQFAYGGDGLDVTRQKHLLAFGSEKKKLQDQLFEFALRNERAL---RARLNVLD-- 1919
Query: 464 PLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLD--DKARKKYRKKFKACPQP 521
+ LL++ ++ KA KK K P
Sbjct: 1920 -----------------------------IVGLLDEHTAVEHMQKALKKPHKY-----PP 1945
Query: 522 LISTFQPDAHFGSISENLADSVVKYTK-----------GRTDA--------SHVDKFYDM 562
+S + + GS SE A + Y K + D SH +
Sbjct: 1946 TMSIYPSTMYIGSTSEAYASVLDAYIKENPHQLILAKSKKKDGEPKVPKLQSHYKQMPGA 2005
Query: 563 IF-----YKNLLSLANPGENVGVLAAQSI-----------------GEPSTQMTLNTFHF 600
+F + L SLA PGE VG+LA+Q +PSTQMTLNTFHF
Sbjct: 2006 MFKLLMNVRYLRSLAEPGEAVGLLASQGCVTGIAFGLDARFGYGYASKPSTQMTLNTFHF 2065
Query: 601 AGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFL----PDMPKLEKKANRLAKSMTRI 656
AG G NVTLGIPRLREI+M A+ KTP+M +P L P ++ K +R+
Sbjct: 2066 AGHGAANVTLGIPRLREIVMTASTKPKTPTMTLPLLTLSSTIRPPSAEQVTLFTKHASRL 2125
Query: 657 TMADVLEKVKIKEWLEISPEPHMNYQMKFCFIPAHMYRDKTSV-KPS---KIIDHFERKF 712
T+A V + ++E L + Y ++ F PA V +P+ I F
Sbjct: 2126 TLAAVTSHITVRESLSNA---RRTYAVQVTFYPADECEAAYGVSRPAVARAIGGRFALVL 2182
Query: 713 LKELEVAIAKRAAQ------GL-KNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRVDVS 765
KE+ AI K + G+ K + + D DD+ + EG R DVS
Sbjct: 2183 RKEVITAIKKAVGEVKDQVGGVGKGRAVRDALDGAGGVGADDDADIPEGEMGTNHRDDVS 2242
Query: 766 SDEERDEEDAVQSHKKVNQEE 786
E + DA + +K +E
Sbjct: 2243 ---EVGDGDADEMKRKSRTQE 2260
Score = 110 bits (276), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 89/143 (62%), Gaps = 2/143 (1%)
Query: 865 SKHLLKTDGINVNFI-SQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
+KHL +T G N + I + ++DL+ + NDIH + +YG+E A I++E+++VF+VY
Sbjct: 2395 TKHL-ETTGTNFSGIWAAASDVVDLDNITSNDIHAILCSYGVEMARTAILKEIESVFSVY 2453
Query: 924 GIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDS 983
I VD RHL+L+ADYMT G Y NR GI + S + K ++E + A++ G D
Sbjct: 2454 KIAVDFRHLTLIADYMTFDGGYKPFNRRGISTHSSTLLKASYETTAAFLSDATLHGDFDD 2513
Query: 984 LRAPSARVMLGQECRQGTGLFQL 1006
L +PS ++LG+ + GTG+F +
Sbjct: 2514 LTSPSGNIVLGRPIQTGTGIFSI 2536
>gi|119619874|gb|EAW99468.1| polymerase (RNA) I polypeptide A, 194kDa, isoform CRA_b [Homo
sapiens]
Length = 1128
Score = 479 bits (1234), Expect = e-132, Method: Compositional matrix adjust.
Identities = 246/463 (53%), Positives = 314/463 (67%), Gaps = 17/463 (3%)
Query: 1 MDGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA S +AEA L QYLVPKDG PL+GLIQDH++SGA ++ R F
Sbjct: 589 FDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFF 648
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL 116
TR YM LVY+ L ++ L P+I KP PLWTGKQV+ST++IN+ P+D + +
Sbjct: 649 TREHYMELVYRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLN---- 704
Query: 117 LSG---ILDKKQFGSTQYGLV----HAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHA 169
LSG I K T + ++ ++ V IR GELL G+LDK +GS+ YGLVH
Sbjct: 705 LSGKAKITGKAWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHC 764
Query: 170 VWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGT 228
++ +G E + +L+CLA+LFT YLQ GFTLGV DILV+ + D KR +II ++ G
Sbjct: 765 CYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGP 824
Query: 229 EAACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCLPEG 287
+A AL LP + + + Q+A+ Q ID ++K ++ +N IN+ C+P G
Sbjct: 825 QAVRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFG 884
Query: 288 LIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVS 347
L FP N+LQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PYE +
Sbjct: 885 LHRQFPENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFT 944
Query: 348 PRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYD 407
PRAGGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V YD
Sbjct: 945 PRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYD 1004
Query: 408 MTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWI 450
+TVRDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I
Sbjct: 1005 LTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVI 1047
>gi|378727241|gb|EHY53700.1| DNA-directed RNA polymerase I subunit A1 [Exophiala dermatitidis
NIH/UT8656]
Length = 1744
Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust.
Identities = 291/747 (38%), Positives = 420/747 (56%), Gaps = 77/747 (10%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
+ + EA + + QYL G PL GLIQDH+ G + + RD F R +Y L+Y
Sbjct: 662 NELARTEALQIADTDHQYLSATAGKPLRGLIQDHISMGVQFTSRDVFFDREQYQQLLYSC 721
Query: 69 L-----CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTP-----------KDKVIIR 112
L + +I+ + P I KP LWTGKQV++TV+ N+TP +
Sbjct: 722 LRPEDYNTVYEKIQMVEPAILKPKMLWTGKQVITTVMKNITPDRFHGLNLTSKSSTSSEQ 781
Query: 113 HGELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWD 172
GE S D K++ T+ +V + V R GE LSGILDK Q G + GLVH+V +
Sbjct: 782 WGEKASN--DPKKWTVTKDSIVFRDTEQVVIFRDGEHLSGILDKNQLGPSAGGLVHSVHE 839
Query: 173 THGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAAC 232
+G A L+S L +L T YL +T G+ D+ + +E DR+R + ++KA+R+G E A
Sbjct: 840 IYGHITAGKLMSILGRLLTRYLNERAWTCGMDDLYLTEEGDRQRRQELSKAKRMGFEVAA 899
Query: 233 NALGLPL----DTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGL 288
+ L D P+++ +L+ + Q +D+ YK+ + +T+N+++ CLP+GL
Sbjct: 900 EYVTLDPNKIEDQSPQLVG-RLENVLRNDDQLNG-LDQVYKAKVKSITDNVSKFCLPKGL 957
Query: 289 IEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSP 348
+PFP N +Q M SGAKGS+VN ISC LGQ LEG+R +MVSG+TLPSF YE P
Sbjct: 958 RKPFPRNQMQAMTISGAKGSSVNANLISCNLGQQVLEGRRVPVMVSGKTLPSFRAYETDP 1017
Query: 349 RAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDM 408
AGG+V GRF+TGI+PQE+FFH M+GREGLIDTAVKTS+SGYLQRC+VK LEGL YD
Sbjct: 1018 VAGGYVCGRFLTGIRPQEYFFHAMSGREGLIDTAVKTSKSGYLQRCIVKGLEGLRTEYDT 1077
Query: 409 TVRD-SDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSL 467
+VR+ S+ ++IQ LYGEDGL++TK+++L K+F+FL +N + + + +L + P
Sbjct: 1078 SVRESSNGNVIQFLYGEDGLEITKQKHL--KEFTFLAENHQSVATLMKAEEVLSRIP--- 1132
Query: 468 ALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQ 527
Q + KA K KK KA PL + F
Sbjct: 1133 ------------------------------NQGLADEQKAIIKSTKKGKA-KDPLTALFT 1161
Query: 528 PDAHFGSISENLADSVVKYTKGRTDASHVDK------------FYDMIFYKNLLSLANPG 575
P +HFGS SE+ A ++ Y K DK F ++ K + S+ + G
Sbjct: 1162 PASHFGSTSESFATALSAYIKENPHKLIRDKKTNPGGIVSKKTFQSVMDLKYMKSIVDAG 1221
Query: 576 ENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPF 635
E VGV+AAQS+GEPSTQMTLNTFH AG NVTLGIPRLREI+M A+ I TP+M +
Sbjct: 1222 EAVGVVAAQSVGEPSTQMTLNTFHLAGHSAKNVTLGIPRLREIIMTASAKIMTPTMTLKP 1281
Query: 636 LPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWL--EISPEPHMNYQMKFCFIPAHMY 693
+ ++ E R AKS++R+++A V+ + + E E Y ++ Y
Sbjct: 1282 IEELTAAE--GERFAKSISRLSLAHVINTLSVTERAGGGAGHEHEKIYDIRIELYDPAEY 1339
Query: 694 RDKTSVKPSKIIDHFERKFLKELEVAI 720
++ +++ + ++ FE++FL L+ I
Sbjct: 1340 EEEYAIQRADVLRCFEKRFLPRLDKMI 1366
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 88/147 (59%), Gaps = 1/147 (0%)
Query: 861 EEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 920
EE + ++ T+G+N+ + Y+ + + LY N +H M YG+EAA II+E+ VF
Sbjct: 1593 EESVKEPVITTEGVNLLAMRDYQDQIYPHSLYTNSVHDMLKYYGVEAARMTIIKEIDGVF 1652
Query: 921 AVYGIEVDPRHLSLVADYMTHSGTYVAMNRNG-IRLNPSFIQKMTFEMPLEKIRQASMQG 979
+GI VD RHL+L+ D MT+SG+Y +R+G +R S + KM+FE + ++ A + G
Sbjct: 1653 KGHGITVDMRHLNLIGDAMTNSGSYQPFSRHGLVREGGSVLAKMSFETVMGFLKDAVLFG 1712
Query: 980 REDSLRAPSARVMLGQECRQGTGLFQL 1006
D L PSAR++ G+ GTG F +
Sbjct: 1713 ESDPLLGPSARIVAGRRGNIGTGAFDV 1739
>gi|240977019|ref|XP_002402573.1| DNA-directed RNA polymerase I largest subunit, putative [Ixodes
scapularis]
gi|215491199|gb|EEC00840.1| DNA-directed RNA polymerase I largest subunit, putative [Ixodes
scapularis]
Length = 1640
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 252/460 (54%), Positives = 312/460 (67%), Gaps = 10/460 (2%)
Query: 2 DGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLT 57
DG NA S +AEAS + V+ QYLVPKDG+PLSGLIQDHVI+G+ L+++ F
Sbjct: 587 DGDEMNAHFPQSELARAEASQVATVNRQYLVPKDGTPLSGLIQDHVIAGSLLTMQGRFFN 646
Query: 58 RAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDK-VIIRHGEL 116
R +Y LVY AL + + I+ LPP I KP LWTGKQVLSTV+IN P++K G+
Sbjct: 647 REDYNQLVYGALTFVPSSIKVLPPAIQKPETLWTGKQVLSTVLINCIPRNKPAPTVEGKA 706
Query: 117 LSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGA 176
+ GS + + V IR GELL G+LDK +G TQ+GLVH ++ +G
Sbjct: 707 KIPAKAWLRPGSEANEAEAQMSEGQVVIRDGELLCGVLDKAHYGPTQFGLVHVCYELYGG 766
Query: 177 EHAISLLSCLAKLFTVYLQ-RVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNAL 235
+ +L+ A+LFT +LQ VGFTLG+ DILV + D+KR KI+ AR+ G AA AL
Sbjct: 767 AISSLVLTAFARLFTHFLQTHVGFTLGIEDILVTLKADKKRKKIMKMARKEGDGAAKKAL 826
Query: 236 GLPLDTDPEIISSQLQEAYASI-PQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPA 294
G+ D PE + L+ A+ S ++ Q+D KS+ D V N IN+ C+P+GL++ FP
Sbjct: 827 GIEEDIAPEDLMESLRGAHLSRNDRYLKQLDASMKSVTDDVNNQINKACIPDGLLKKFPE 886
Query: 295 NNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFV 354
NNLQ MV+SGAKG VN MQISCLLGQIELEG+R +M+SGRTLPSFLPY+ SPRAGGFV
Sbjct: 887 NNLQLMVQSGAKGGMVNCMQISCLLGQIELEGRRVPLMLSGRTLPSFLPYDTSPRAGGFV 946
Query: 355 DGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSD 414
DGRF+TGI+PQEFFFHCMAGREGL+DTAVKTSRSGYLQRCL+KHLEGL V YD TVRDSD
Sbjct: 947 DGRFLTGIRPQEFFFHCMAGREGLVDTAVKTSRSGYLQRCLIKHLEGLMVGYDQTVRDSD 1006
Query: 415 LSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYK 454
S YGEDGLDV K Q L QF L N + + K
Sbjct: 1007 GSF---QYGEDGLDVLKMQMLKPSQFPVLIKNAEALLDSK 1043
Score = 213 bits (543), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 169/540 (31%), Positives = 250/540 (46%), Gaps = 122/540 (22%)
Query: 496 LLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYT-------- 547
L+E + L+ K+ KK K P+ S + D + G+ISE L V Y
Sbjct: 1116 LVEAFQALEHKSLKKLNKAIVKPADPVCSVVRNDLNLGAISERLDALVEDYISKNPHRLL 1175
Query: 548 ---KGRTDASHV---------DKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTL 595
K D S D F ++++ +NL S+ +PGE VG+LAAQSIGEPSTQMTL
Sbjct: 1176 VDPKRSPDGSVTERERKVLSPDDFRNVVYLRNLRSICDPGEPVGLLAAQSIGEPSTQMTL 1235
Query: 596 NTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTR 655
NTFHFAGRG+MNVTLGIPR+REILM+A+ I TP+M++ LP E++A+RL +T
Sbjct: 1236 NTFHFAGRGEMNVTLGIPRMREILMVASANIATPTMDLHLLP-AADAEQRADRLRVLITA 1294
Query: 656 ITMADVLEKVKIKEWLEISP--EPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFL 713
+ +A VLE+V ++E L + E Y++ F F+P YR P +I+ + E FL
Sbjct: 1295 VNLAQVLEEVTVRERLVVKGRMERFREYRVHFQFLPRKAYRKTLHATPQRILRYMETTFL 1354
Query: 714 KELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGA---EGAGAALGRVDVS----- 765
+ L A+ ++ Q ++ ++ +D+G A EG+GAA DV
Sbjct: 1355 RRLVEAVKRKLEQ------VKSAKAGGSSASNNDQGNDAAFDEGSGAARNAADVDDDGGG 1408
Query: 766 --------------------------------------SDEERD--EEDAVQSHKKV-NQ 784
SDEE D EE + + K+ N
Sbjct: 1409 SSDEGEGDGDTVAQQAQSRHAQDREYEEAEEEELPAALSDEEVDGGEEGNLATVPKLENA 1468
Query: 785 EEDNDFEEPEDEERMSEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDK 844
EED ++ DE R++ ++ + + VF NQ V Y YD
Sbjct: 1469 EEDGAADDEGDEPRLASLKK--GAHKVKHQKASRTAKEARVFAVTSFNQ--WVTGYDYDV 1524
Query: 845 KNHMWCKLLFLPS---------NLFEEKESK-------------------------HLLK 870
WC F S ++ EE+ +K +L+
Sbjct: 1525 DQEEWCCYTFRLSLEGSKFDFTSVVEEESAKAVFHSVPGISRAFLVKDTKDRSGCGKMLQ 1584
Query: 871 TDGINVNFISQYRH--LLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 928
T+G VNF+ +RH ++D+ ++Y NDIH +A+T+GIEAA I R + +V G+ VD
Sbjct: 1585 TEG--VNFVEMFRHGDIVDMRRIYSNDIHAIANTFGIEAARTAIAR--VSHLSVSGMSVD 1640
>gi|449665133|ref|XP_002164942.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Hydra
magnipapillata]
Length = 1698
Score = 476 bits (1226), Expect = e-131, Method: Compositional matrix adjust.
Identities = 347/1107 (31%), Positives = 563/1107 (50%), Gaps = 165/1107 (14%)
Query: 1 MDGWTQNASHFL-----KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTF 55
DG NA HF ++EA L++ YL PKDG PL+GLIQDH++SG ++ RD F
Sbjct: 650 FDGDEMNA-HFPQNELGRSEAYNLVSTHYNYLSPKDGKPLAGLIQDHIVSGVWMTSRDKF 708
Query: 56 LTRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGE 115
R EY L++ AL +I+TLPP I KP+PLW+GKQ+ S+V++N+ P + +
Sbjct: 709 FKRDEYQQLIFNALIDSPNKIKTLPPCIIKPVPLWSGKQIFSSVLLNIIPDGLIPLN--- 765
Query: 116 LLSGILDKKQFGSTQYGLVHAVW----------DTHVTIRHGELLSGILDKKQFGSTQYG 165
++G +K + + + + V + V IR GEL++GILDK Q+GSTQ+G
Sbjct: 766 -MTG--NKAKLTDSNWAKDNKVLGCSDKDPFLTEGQVIIRGGELMTGILDKTQYGSTQFG 822
Query: 166 LVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARR 225
LVH V++ +G + + LLS LA+LFT YLQ GF+LG+ DILV + D KR +II++ +R
Sbjct: 823 LVHCVYELYGGKISGLLLSVLARLFTAYLQHTGFSLGIEDILVFPKSDAKRKEIIDEGKR 882
Query: 226 LGTEAACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNIN---- 280
G E+A AL + + + + LQ+A+ + AQ+D K+ DK+TN IN
Sbjct: 883 CGDESAMEALNV---KERDQLEECLQKAHFTNKGVELAQLDLSMKTRTDKITNKINRMKY 939
Query: 281 ---QVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRT 337
+V +E P + + +V++ K S +Q CL+ +E A+ V
Sbjct: 940 FMAKVINLLNCLELCPIEHFRGLVDTAVKTSRSGYLQ-RCLIKHLE------ALRVE--- 989
Query: 338 LPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVK 397
Y+++ R G DG + +F + G +G+ LQ +K
Sbjct: 990 ------YDMTVRDG---DGSVI------QFLY----GDDGI----------DVLQNQFLK 1020
Query: 398 HLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDN---IKWICSYK 454
+ T+ + + L++ L + +D+TK + K + + + N +CS+
Sbjct: 1021 KEQYTTIIQNYKAYE---MLLKPLEMQKHVDLTKAMKIQKKCYRWKKHNGIPFSSLCSH- 1076
Query: 455 VILNLLKKHPLS-LALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRK 513
L+ P + FK + I R++ + LLE+WY+++D+ R Y
Sbjct: 1077 -----LRTSPFNYFESEKKRKFKKKYSSSNINKFGRSEVELKLLEKWYKIEDQNR--YLS 1129
Query: 514 KFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDK------------FYD 561
K + CP ++S P +FGS+SE D + +Y + D+ D F
Sbjct: 1130 KCRPCPDTVLSLCNPSCYFGSVSEKFRDELDEYIRLNPDSILSDNNEENERKISPETFRP 1189
Query: 562 MIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMM 621
++ K L S+ +PGE VG+LA+QSIGEPSTQMTLNTFHFAG+ DMNVTLGIPRLREILM
Sbjct: 1190 FMYAKYLRSVVHPGEAVGLLASQSIGEPSTQMTLNTFHFAGQSDMNVTLGIPRLREILMT 1249
Query: 622 ATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHM-- 679
A++ I+TP M+I + +A ++ K + ++ + V++ + + E L + +
Sbjct: 1250 ASENIQTPQMDILVCTGK---DDEAKKICKHLNKVNLIQVIKHLSVFECLTRKYDDNTLC 1306
Query: 680 -NYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRD 738
++++ F+P ++Y D V P II + E F+K+L + I K K IE
Sbjct: 1307 RQFRIRIEFLPENIYVDNYDVNPVSIIKYVETVFIKKLCIHILKVMKDKEKQKLIESHTT 1366
Query: 739 QMEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEER 798
++ +++ + D+S DE D DA + + +++ + +++PE+ E
Sbjct: 1367 RLPSAPANNDEDSRNPPDEPDDAADLSDDEFGD-GDAAATKEMNRKKQFSSYDDPEEREE 1425
Query: 799 MSEREEDDNTSNIGERFKIEFRDSTNVF--------------------------VKDVVN 832
E + ++NI + ++ + +F V +V+
Sbjct: 1426 ELEETSEIFSANIKQEPFEDYEEENVIFLFAEELNVDSDQKPKKGINEIHMDPRVANVLK 1485
Query: 833 QHNIVHKYSYDKKNHMWCKLLFLP--------SNLFEE------------------KESK 866
+ + Y D +N + L P +++ E+ KESK
Sbjct: 1486 RDRHITGYLVDTQNQWFEVTLQFPLAGSKLMMTSIIEKLAEKSIVHEAPGISRSMLKESK 1545
Query: 867 H-------LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNV 919
+KT+G+N+ + +Y ++L+LN +Y NDIH +A YGIEAA V+I+EV++V
Sbjct: 1546 KQGETGRLRIKTEGVNIQELWKYPNVLNLNTIYSNDIHAIAKAYGIEAARSVLIKEVQDV 1605
Query: 920 FAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQG 979
F VYGI++DPRHLS++ DYMT G Y + NRN I+ NP QKM+FE + +R A+ G
Sbjct: 1606 FQVYGIQIDPRHLSMIGDYMTFEGVYKSFNRNAIQPNPFPFQKMSFETSINFLRSATAFG 1665
Query: 980 REDSLRAPSARVMLGQECRQGTGLFQL 1006
D L +PS+R+++G+ GTG+ L
Sbjct: 1666 ELDDLGSPSSRIVVGRVIGTGTGMVDL 1692
>gi|330844422|ref|XP_003294125.1| RNA polymerase I, largest subunit [Dictyostelium purpureum]
gi|325075464|gb|EGC29348.1| RNA polymerase I, largest subunit [Dictyostelium purpureum]
Length = 1598
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 290/757 (38%), Positives = 421/757 (55%), Gaps = 96/757 (12%)
Query: 25 QYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCILNTE--IRTLPPT 82
QYLVP++G+PL GLIQDH+++G L+ RDT T+A++ +++Y L +NT+ I T PP
Sbjct: 611 QYLVPRNGAPLRGLIQDHILTGVLLTKRDTLFTKADFQSILYACLWSVNTKHPIVTPPPC 670
Query: 83 IWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYGLVHA---VWD 139
I+KP+PLW+GKQ++S + +LT G + + + +G H D
Sbjct: 671 IFKPVPLWSGKQLISAALTHLTI--------GRVPLNLEAPSKIPIKMWG-THGPDVTRD 721
Query: 140 THVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGF 199
+ V IR E+++GILDK FG++ YGLVH ++ + + A SLL+ L ++FT YLQ GF
Sbjct: 722 SLVIIRQNEMVAGILDKGHFGASSYGLVHTCYELYDPDVAGSLLTILGRMFTSYLQTRGF 781
Query: 200 TLGVRDILVRQERDRKRTKIINKARRLGTEAAC---NALGLPLDTDPEIISSQLQEAYAS 256
T GV D+L++ + ++ R + A G A NA E LQ
Sbjct: 782 TCGVDDLLMKSKEEQFRALNLKMANDEGYNVAAKFGNASEYNAKESREFFGKALQSEREV 841
Query: 257 IPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQIS 316
A++D K L+ T+ I +P G +PFP NN M SGAKGS VN Q+S
Sbjct: 842 -----ARLDGMLKKALNTYTSKIIDTLIPGGQQKPFPKNNFSLMTVSGAKGSVVNFSQVS 896
Query: 317 CLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGRE 376
CLLGQ ELEGKR MVSG+TLPSF Y+ S RAGGFV RF+TG++PQ++FFHCMAGRE
Sbjct: 897 CLLGQQELEGKRVPRMVSGKTLPSFQAYDPSARAGGFVMDRFLTGVRPQDYFFHCMAGRE 956
Query: 377 GLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLT 436
GLIDTAVKTSRSGYLQRCL+KHLEGL++ YD TVRDSD S+IQ YGED L++ K YLT
Sbjct: 957 GLIDTAVKTSRSGYLQRCLIKHLEGLSIQYDNTVRDSDGSIIQFNYGEDSLEIGKTPYLT 1016
Query: 437 DKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDL 496
+F + +N + +++F +
Sbjct: 1017 --KFPIIAEN--------------------------------------YDLFKSQFDFEK 1036
Query: 497 LEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKY---------- 546
L Q D+ + K P++S F P + G +SE+ + + KY
Sbjct: 1037 LIGQLQNDEVFDYIRQMKVDNTMDPVMSKFNPSSDLGCVSESFMNQLNKYIDTNPQKLIK 1096
Query: 547 TKGRTDASHVDK-FYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGD 605
T D +K F ++++ S+ +PGE+VG+L AQSIGEPSTQMTLNTFH AGRG+
Sbjct: 1097 TTSNRDGKITEKDFRNLMYLYYTRSMVSPGESVGLLCAQSIGEPSTQMTLNTFHLAGRGE 1156
Query: 606 MNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKV 665
NVTLGIPRLREI+M A+ TP ME F + P + + ++AK + + M D+++ +
Sbjct: 1157 ANVTLGIPRLREIIMTASSKPSTPLME--FQINDPTNKAETEKMAKYLEILKMCDIIKDI 1214
Query: 666 KIKEWLEISPEPHMNYQMKFCFIPA-----HMYRDKTSVKPSKIIDHFERKFLKELEVAI 720
++E + + + Y++ F+P ++R +K ++ F ++F+K++ +
Sbjct: 1215 TVEESFK---DTNRIYEIVIEFLPTLKKTLELHR----IKKEQLTVLF-KEFIKKVNAQV 1266
Query: 721 AKR---AAQGLKNMNIEQSRDQMEDDV-----EDDEG 749
K Q + + + + D +EDD +DDEG
Sbjct: 1267 RKNNKIKTQDIGHGSKVRGSDLVEDDSDKIGKDDDEG 1303
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/143 (41%), Positives = 93/143 (65%)
Query: 864 ESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
++++ ++++G+N+N I R L +N+ Y NDI+ + YG+EA + I E+ NVF Y
Sbjct: 1451 KTEYSIQSEGVNLNEIFNLRDKLKINEFYTNDIYSVLHKYGVEACRQAITSEISNVFGAY 1510
Query: 924 GIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDS 983
GI VD RHL L+ DYMT G Y A+NR GI N S QKM+FE + +A++ G D+
Sbjct: 1511 GISVDKRHLILLGDYMTFEGGYRALNRIGIENNTSPFQKMSFETTFSFLSKAALMGDYDA 1570
Query: 984 LRAPSARVMLGQECRQGTGLFQL 1006
+++PS+R++LGQ + GTG F +
Sbjct: 1571 VKSPSSRIVLGQPVKTGTGSFSI 1593
>gi|116204821|ref|XP_001228221.1| hypothetical protein CHGG_10294 [Chaetomium globosum CBS 148.51]
gi|88176422|gb|EAQ83890.1| hypothetical protein CHGG_10294 [Chaetomium globosum CBS 148.51]
Length = 1475
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 343/990 (34%), Positives = 496/990 (50%), Gaps = 155/990 (15%)
Query: 71 ILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELL---SGILDKKQFG 127
I +I +PP I KP P WTGKQV++T++ N+ P D G+L S + + +G
Sbjct: 536 ITGDKIELVPPAIIKPAPRWTGKQVITTILKNIRPAD-----CGDLWMNGSAKVKSRSWG 590
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
+ V R GE +SGILDK Q G + G VHAV + +G A LLS +
Sbjct: 591 EDSE-------EGQVMFRDGEFISGILDKSQLGPSDGGFVHAVHEVYGPSVAGKLLSSIG 643
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL----PLDTDP 243
+L T YL V FT G+ D+ + + ++ R + I A +G E A + L P DP
Sbjct: 644 RLLTRYLAMVAFTCGMDDLRMTPQGEKDRKETIKAAVNIGIEVAAKYVSLGEQKPTKDDP 703
Query: 244 EIISSQLQEAYASIPQFRAQIDRQYKSL-------LDKVTNNINQVCLPEGLIEPFPANN 296
++ +L+E + D++ + L K++ I ++CLP GL + FP N+
Sbjct: 704 -LLLERLEEVHRD--------DKKQEGLELLTSQECAKLSTEITRLCLPAGLEKQFPKNH 754
Query: 297 LQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDG 356
+Q M SGAKGS VN ISC LGQ LEG+R +MVSG+TLPSF PY+ RAGG++
Sbjct: 755 MQSMTTSGAKGSPVNANLISCNLGQQVLEGRRVPVMVSGKTLPSFKPYDTDVRAGGYIVN 814
Query: 357 RFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLS 416
RF+TGI+PQE++FH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL V YD +VRDSD +
Sbjct: 815 RFLTGIRPQEYYFHHMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLRVSYDSSVRDSDGT 874
Query: 417 LIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFK 476
++Q L+GEDG+D+ K++YL D +F V+ NL + P + +
Sbjct: 875 VVQFLFGEDGIDIGKQKYLNDFEF--------------VLRNLDSQLPQ-------IRYH 913
Query: 477 SSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACP-QPLISTFQPDAHFGSI 535
SG T L E ++ + + R P P+ S P A +
Sbjct: 914 ESG-------------TQALFEHRDEIMKRMKSAIRSSSTRNPLDPVSSEVDPTAFAFAT 960
Query: 536 SENLADSVVKYTKGRTDASHVDK--------------FYDMIFYKNLLSLANPGENVGVL 581
SE ++ Y K D +K ++ K + SL PGE VG++
Sbjct: 961 SEKFYSKMMDYVKTNKDGLIKEKKGSDSQKGQIARKTAEKILAAKYIRSLVEPGEAVGIV 1020
Query: 582 AAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPK 641
A QS+GEPSTQMTLNTFH AG NVTLGIPRLREILM A+ I TPSM + ++ +
Sbjct: 1021 AGQSVGEPSTQMTLNTFHLAGHSAKNVTLGIPRLREILMTASSKISTPSMTLVLNEELSE 1080
Query: 642 LEKKANRLAKSMTRITMADVLEKVKIKEWLE--ISPEPHMNYQMKFCFIPAHMYRDKTSV 699
L+ + AKS++ + +A V ++ ++E + I +++++ F A Y ++
Sbjct: 1081 LD--GEQFAKSISVLPLAHVTKEAVVRERVGRGIGYALAKSFEIRLRFFEAGDYASMYAI 1138
Query: 700 KPSKIIDHFERKFLKELEVAI------------AKRAAQGLKNMNIEQSRDQME----DD 743
+ +++ ERKF+ L + A G+K+ +E + E D
Sbjct: 1139 NIADVLNTVERKFIPLLSLLTRKEIKKKQKSKSAATPEVGVKSGVVETAPPASERVTTGD 1198
Query: 744 VEDDEGEGAEGAGAALGRVD----VSSDEERDEEDAVQSHKKVNQEEDNDFEEPE----- 794
EDD+ EG + A +A R + VS DE+D +Q+ Q E +D EE E
Sbjct: 1199 DEDDDDEGDDDATSAKQRANRSEAVSYGPNDDEDDEIQNQL---QRETDDVEEGEERLDF 1255
Query: 795 -------------------DEERMSEREEDDNTSN-----------IGE--RFKIEFRDS 822
DEER RE + N GE F +EF S
Sbjct: 1256 VDEAYGGSPEPEDELGDKTDEERSRSREARIKSKNEHVARFRCDEAGGEWVDFTLEFDAS 1315
Query: 823 TNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSN-----LFEEKESKHLLKTDGINVN 877
+ + Q + K S ++ H F P EE+ + L+ TDG N+
Sbjct: 1316 IPKILMLSLVQEAV--KKSVIQQIHRIGNAAFEPKKRKDEATGEERIVEMLVHTDGANLR 1373
Query: 878 FISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVAD 937
+ QY ++ N++ NDI + YG+EA I+ E+ VFA +GI VDPRHL+L+AD
Sbjct: 1374 AMQQYGDYINPNRISTNDIAQVLEVYGVEACRSNIVAELSGVFAGHGIAVDPRHLNLIAD 1433
Query: 938 YMTHSGTYVAMNRNGIRLNPSFIQKMTFEM 967
YMT +G + A NR G+ N S KM++ +
Sbjct: 1434 YMTRNGGFSAFNRIGLTGNVSPFTKMSYAL 1463
>gi|169763190|ref|XP_001727495.1| DNA-directed RNA polymerase i [Aspergillus oryzae RIB40]
gi|238489071|ref|XP_002375773.1| DNA-directed RNA polymerase I subunit (Rpa190), putative [Aspergillus
flavus NRRL3357]
gi|83770523|dbj|BAE60656.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220698161|gb|EED54501.1| DNA-directed RNA polymerase I subunit (Rpa190), putative [Aspergillus
flavus NRRL3357]
gi|391869753|gb|EIT78948.1| RNA polymerase I, large subunit [Aspergillus oryzae 3.042]
Length = 1673
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 285/739 (38%), Positives = 408/739 (55%), Gaps = 87/739 (11%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
+ +AEA L + QYLV G PL GLIQDH+ + RD+F +Y L+Y
Sbjct: 645 NELARAEAMMLADADHQYLVATSGKPLRGLIQDHISMSTWFTCRDSFFDEEDYHELLYSC 704
Query: 69 LCILNT-----EIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDK 123
L N+ I+ + PT+ KP LWTGKQ+++T++ N+ P ++ + S D+
Sbjct: 705 LRPENSHTITERIQVVAPTMIKPKRLWTGKQIITTILKNIMPPNRAGLNMKSKSSTPGDR 764
Query: 124 KQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLL 183
G+ + V + GELL GILDKKQ G T GL+ ++ + +G A L+
Sbjct: 765 WGEGNEE---------GTVLFKDGELLCGILDKKQIGPTAGGLIDSIHEIYGHTIAGRLI 815
Query: 184 SCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLP----L 239
L +L T +L FT G+ D+ + +E DR R + ++KA +G E A + L
Sbjct: 816 GILGRLLTRFLNMRAFTCGIDDLRLTKEGDRVRKEKLSKASEIGREVALKYVTLDQTKVA 875
Query: 240 DTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTN--------NINQVCLPEGLIEP 291
D D E+ +L++ D + +S LD V+N I + CLP GL++P
Sbjct: 876 DEDTEL-RRRLEDVLR---------DDEKQSGLDSVSNARTANLSTEITKACLPGGLVKP 925
Query: 292 FPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAG 351
FP N +Q M SGAKGS+VN ISC LGQ LEG+R +M+SG+TLPSF ++ +P AG
Sbjct: 926 FPWNQMQSMTISGAKGSSVNANLISCNLGQQVLEGRRVPVMISGKTLPSFRAFDTNPMAG 985
Query: 352 GFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVR 411
G+V GRF+TGI+PQE++FH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL YD +VR
Sbjct: 986 GYVCGRFLTGIKPQEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLRAEYDTSVR 1045
Query: 412 D-SDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALL 470
+ SD S++Q LYGEDGLD+TK+ +L D F FL N K I S +N H L
Sbjct: 1046 EASDGSIVQFLYGEDGLDITKQVHLKD--FDFLASNYKSIISQ---VNSSDFHTLE---- 1096
Query: 471 LLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKA-CPQPLISTFQPD 529
+ + +W++ A +K RK K P++S + P
Sbjct: 1097 -----------------------NEEVGEWHK---DAMRKVRKTGKVDAMDPVLSIYHPG 1130
Query: 530 AHFGSISENLADSVVKYTKGRTDASHV------------DKFYDMIFYKNLLSLANPGEN 577
+ GS SE A +V KY G D F +M+ K L S+ +PGE
Sbjct: 1131 GNLGSTSELFAQAVKKYEDGNPDKLLKDKKKSIEGILSKKSFGNMMNMKYLKSVVDPGEA 1190
Query: 578 VGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLP 637
VG++A QSIGEPSTQMTLNTFH AG NVTLGIPRLREI+M A+ I TP+M +
Sbjct: 1191 VGIVAGQSIGEPSTQMTLNTFHLAGHSAKNVTLGIPRLREIVMTASAHIMTPTMTLILNE 1250
Query: 638 DMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCFIPAHMYRDKT 697
++ K + + R AK+++++++A+V++KV+I+E + Y ++ F P Y +
Sbjct: 1251 ELSK--EHSERFAKAISKLSIAEVVDKVEIRERITSGSTKAKVYDIEISFFPPEEYTAEY 1308
Query: 698 SVKPSKIIDHFERKFLKEL 716
++K + + KF+ +L
Sbjct: 1309 AIKTKDVQIALQNKFIPKL 1327
Score = 109 bits (273), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 90/144 (62%), Gaps = 2/144 (1%)
Query: 864 ESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
E H++ TDG+N+ + Y+ ++ + LY N IH+M + YG+EAA I+RE+ VF +
Sbjct: 1526 EPAHVI-TDGVNLLAMRDYQDIIQPHSLYTNSIHHMLNLYGVEAARASIVREMTEVFEGH 1584
Query: 924 GIEVDPRHLSLVADYMTHSGTYVAMNRNG-IRLNPSFIQKMTFEMPLEKIRQASMQGRED 982
I VD RHL+L+ D MT SG + NRNG ++ S + KM+FE + +R A + D
Sbjct: 1585 SISVDNRHLNLIGDVMTQSGGFRPFNRNGLVKDASSPLAKMSFETTVGFLRDAVQERDYD 1644
Query: 983 SLRAPSARVMLGQECRQGTGLFQL 1006
+L++PS+R+++G+ GTG F +
Sbjct: 1645 NLKSPSSRIVVGRVGTVGTGAFDV 1668
>gi|90081872|dbj|BAE90217.1| unnamed protein product [Macaca fascicularis]
Length = 524
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 253/539 (46%), Positives = 337/539 (62%), Gaps = 62/539 (11%)
Query: 264 IDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIE 323
ID ++K ++ +N IN+ C+P GL FP N+LQ MV+SGAKGSTVNTMQISCLLGQIE
Sbjct: 2 IDLKFKEEVNHYSNEINKACMPFGLHRQFPENSLQMMVQSGAKGSTVNTMQISCLLGQIE 61
Query: 324 LEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAV 383
LEG+RP +M SG++LP F PYE +PRAGGFV GRF+TGI+P EFFFHCMAGREGL+DTAV
Sbjct: 62 LEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAV 121
Query: 384 KTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFL 443
KTSRSGYLQRC++KHLEGL V YD+TVRDSD S++Q LYGEDGLD+ K Q+L KQF FL
Sbjct: 122 KTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFL 181
Query: 444 EDNIKWICS-------------------YKVILNLLKKHPLSL--------------ALL 470
N + I ++ I KHP +L A +
Sbjct: 182 ASNYEVIMKSLHLHEVLSRADPKKALRHFRAIKKWQGKHPNTLLRRGAFLSYSQKIQAAV 241
Query: 471 LLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDA 530
L +S + R+ T ++L WY+LD+++R+KY+KK CP P +S ++PD
Sbjct: 242 KALNLESENRNG------RSPGTQEMLRMWYELDEESRRKYQKKAATCPDPSLSVWRPDI 295
Query: 531 HFGSISENLADSVVKYTK---GRTDASH------VDKFYDMIFYKNLLSLANPGENVGVL 581
+F S+SE V Y++ +T+ S+ +D+ ++ K SL PGE VG+L
Sbjct: 296 YFASVSETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLL 355
Query: 582 AAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPK 641
AAQSIGEPSTQMTLNTFHFAGRG+MNVTLGIPRLREILM+A+ IKTP M +P L + K
Sbjct: 356 AAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVL-NTKK 414
Query: 642 LEKKANRLAKSMTRITMADVLEKVKIKE--WLEISPEPHMNYQMKFCFIPAHMYRDKTSV 699
K+ L K +TR VL+K+ ++E +E YQ++F F+P Y+ + +
Sbjct: 415 ALKRVKSLKKQLTR-----VLQKIDVQESFCMEEKQNKFRVYQLRFQFLPHAYYQQEKCL 469
Query: 700 KPSKIIDHFERKFLKELEVAIAKR--AAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAG 756
+P I+ E +F K L +I K+ A +N+N +R + D+ D+ GE G
Sbjct: 470 RPEDILRFMEIRFFKLLMESIKKKNNKASAFRNVN---TRRATQRDL-DNAGESGRSRG 524
>gi|328871266|gb|EGG19637.1| RNA polymerase I [Dictyostelium fasciculatum]
Length = 1662
Score = 468 bits (1203), Expect = e-128, Method: Compositional matrix adjust.
Identities = 292/727 (40%), Positives = 410/727 (56%), Gaps = 69/727 (9%)
Query: 25 QYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCILNTE--IRTLPPT 82
QYL P+ G PL GLIQDH+++G L+ RDT TRA++ ++Y +L +N + I T P
Sbjct: 627 QYLGPRAGVPLRGLIQDHILTGVLLTKRDTLFTRAQFQAILYASLWGINRDHPIVTPQPA 686
Query: 83 IWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGI--LDKKQFGSTQYGLVHAVWDT 140
I KP+P WTGKQ++S + +LT I R L + K +G ++GL D+
Sbjct: 687 ILKPVPQWTGKQLISAALNHLT-----IGRVPLTLESPSKIPTKLWG--KHGL-DVTRDS 738
Query: 141 HVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFT 200
HV IR E+++GILDK QFG++ GLVH ++ + A SLL+ L ++FT YL GFT
Sbjct: 739 HVIIRQNEMVAGILDKGQFGASGNGLVHTCYEMYDPNTAGSLLTLLGRMFTFYLSTRGFT 798
Query: 201 LGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL----PLDTDPEIISSQLQEAYAS 256
V D+L+ + + R + KA G + A +G L+T +++ L+E
Sbjct: 799 CSVEDLLINAKEEDYRRNELAKANEEGLDVAAKFVGQRKYDKLET-ARLMNVNLREEREV 857
Query: 257 IPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQIS 316
++D K L++ T+ I +P G +PFP NN M SGAKGS VN Q+S
Sbjct: 858 -----GRLDGMLKKALNQYTSKIIDTLIPGGQRKPFPENNFSLMTVSGAKGSVVNFSQVS 912
Query: 317 CLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGRE 376
CLLGQ ELEGKR MVSG+TLP+F P++ S RAGGF+ RF+TG++PQ++FFHCMAGRE
Sbjct: 913 CLLGQQELEGKRVPRMVSGKTLPAFEPFDPSARAGGFIMDRFLTGVRPQDYFFHCMAGRE 972
Query: 377 GLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLT 436
GLIDTAVKT+RSGYLQRC++KHLEG+TV YD TVRD+D S+IQ YGED L++TKRQYLT
Sbjct: 973 GLIDTAVKTARSGYLQRCIIKHLEGITVQYDNTVRDADGSVIQFNYGEDSLEITKRQYLT 1032
Query: 437 DKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDL 496
+ F+ +N Y+++ + L A+ N S + K L
Sbjct: 1033 N--FTVAAEN------YELLKSQFAYDELVPAMR-----------NVKVSEYNDKLHTQL 1073
Query: 497 LEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKY---------- 546
E+ + K P+++ F P A G +SE + KY
Sbjct: 1074 AEK--------KAGTLGKTAQLLDPVMAKFNPAADLGCVSEAFMTDLNKYIDANPQGLIQ 1125
Query: 547 -TKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGD 605
K + F +++F S+ +PGE+VG+L AQSIGEPSTQMTLNTFH AGRG+
Sbjct: 1126 TAKNKKGKIPEKDFRNLMFLYYNRSMVSPGESVGLLCAQSIGEPSTQMTLNTFHLAGRGE 1185
Query: 606 MNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKV 665
NVTLGIPRLREI+M A++ TP ME+ K +A +AK + + M D++E V
Sbjct: 1186 ANVTLGIPRLREIIMTASQNPSTPLMELQISDPTDKAATEA--MAKKLEWLKMNDIIEGV 1243
Query: 666 KIKEWLEISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAA 725
+ E+ E H + ++ F + + K S+ + ER F+KE + RAA
Sbjct: 1244 SVVEYY-TDRERHYDIKITFVANLEEIMQTK-SISKDYMFKTLER-FIKE----VKSRAA 1296
Query: 726 QGLKNMN 732
+ K N
Sbjct: 1297 RSGKKTN 1303
>gi|171690214|ref|XP_001910032.1| hypothetical protein [Podospora anserina S mat+]
gi|170945055|emb|CAP71166.1| unnamed protein product [Podospora anserina S mat+]
Length = 1706
Score = 466 bits (1199), Expect = e-128, Method: Compositional matrix adjust.
Identities = 284/729 (38%), Positives = 404/729 (55%), Gaps = 77/729 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL--- 69
+AEA L N SQY+ GSPL GLIQDH+ L +DTF ++ +YM LVY L
Sbjct: 668 RAEALQLANTDSQYVSGTGGSPLRGLIQDHLSVSVILCNKDTFFSKGDYMQLVYAGLRPE 727
Query: 70 --CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELL--SGI-LDKK 124
I +I T+PP + KP PLWTGKQV+ TV+ N+ P + G+L SG + +
Sbjct: 728 SGHITGEKILTVPPAMIKPRPLWTGKQVIDTVLKNIKPAN-----CGDLWMQSGTKIKAR 782
Query: 125 QFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLS 184
+G H+ + V +R G + GILDK Q GS+ GLVHAV + +G A LLS
Sbjct: 783 SWGD------HSPEEGEVAVRDGIFVHGILDKSQLGSSDGGLVHAVHEVYGPGVAAKLLS 836
Query: 185 CLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL----PLD 240
CL +L T YL V FT G+ D+ + + ++ R ++I +A+ +G E A + L P
Sbjct: 837 CLGRLLTRYLAMVAFTCGMDDLRMTPKGEQDRKELIKEAKHIGLEVAAKYVSLEEQKPTK 896
Query: 241 TDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFM 300
DP ++ + Q ++ + + K+++ I +VCLP GL +PFP N++Q M
Sbjct: 897 DDPLLLERLEEVLRDDKKQEGLELLTNQR--VAKLSSEITRVCLPAGLEKPFPHNHMQSM 954
Query: 301 VESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMT 360
SGAKGSTVN ISC LGQ LEG+R +M+SGRTLPSF P++ RAGG++ RF+T
Sbjct: 955 TISGAKGSTVNANLISCNLGQQTLEGRRVPVMISGRTLPSFRPFDTDARAGGYIVQRFLT 1014
Query: 361 GIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQV 420
GI+PQE++FH MAGREGLIDTAVKTSRSGYLQRCLVK +EGL V YD +VRDSD S++Q
Sbjct: 1015 GIRPQEYYFHHMAGREGLIDTAVKTSRSGYLQRCLVKGMEGLAVSYDSSVRDSDGSVVQF 1074
Query: 421 LYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGK 480
LYGED +D+TK++YL D +F V+ NL + P L F G
Sbjct: 1075 LYGEDSVDITKQKYLNDFEF--------------VLRNLDSELPQ-------LRFHEDG- 1112
Query: 481 PNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQ-PLISTFQPDAHFGSISENL 539
T L E ++ + + R PQ P+ S +P + + SE
Sbjct: 1113 ------------TQALFENKDEIIKRMKSAIRSIGTRNPQDPVTSKLEPSRYGFATSEKF 1160
Query: 540 ADSVVKYTK-----------GRTDASHVDK--FYDMIFYKNLLSLANPGENVGVLAAQSI 586
+ ++ Y K + A + + ++ K + SL PGE VG+ A QS+
Sbjct: 1161 FNHMMDYLKTNKHGLIKEKGSKEKAGQISRKTAEKILAAKYIRSLVEPGEAVGITAGQSV 1220
Query: 587 GEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKA 646
GEPSTQ+TLNTFH AG NVTLG+PRLREILM A+ I TPSM + ++ E+
Sbjct: 1221 GEPSTQLTLNTFHLAGHSAKNVTLGVPRLREILMTASANISTPSMTLVLNEELS--EQDG 1278
Query: 647 NRLAKSMTRITMADVLEKVKIKE--WLEISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKI 704
R AKS++ + ++ V + + E + I+ + + ++ F + Y ++ S +
Sbjct: 1279 ERFAKSISVLPLSHVTKDATVVEKVGVGIAHKVAKTFDIRLRFFESEEYSKMYAISISDV 1338
Query: 705 IDHFERKFL 713
+ E+KF+
Sbjct: 1339 LGTVEKKFI 1347
Score = 112 bits (280), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/139 (41%), Positives = 84/139 (60%)
Query: 868 LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 927
L+ T+G+N+ + Y ++ NKL NDI + YG+EAA I+RE+ VF +GI V
Sbjct: 1555 LVHTEGVNLRAMQLYADYINPNKLQTNDIAQVLEFYGVEAARANIVRELSGVFDSHGIAV 1614
Query: 928 DPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAP 987
D RHLSL+ADYMT +G + NR G+ N S KM++E + ++ A M G D L P
Sbjct: 1615 DKRHLSLIADYMTRNGGFSPFNRIGLTGNVSPFTKMSYETTVGFLKDAVMDGEWDPLMTP 1674
Query: 988 SARVMLGQECRQGTGLFQL 1006
S+R+++G+ GTG F L
Sbjct: 1675 SSRLVVGKLGGLGTGAFDL 1693
>gi|358337315|dbj|GAA55692.1| DNA-directed RNA polymerase I subunit RPA1 [Clonorchis sinensis]
Length = 1612
Score = 463 bits (1192), Expect = e-127, Method: Compositional matrix adjust.
Identities = 309/845 (36%), Positives = 448/845 (53%), Gaps = 97/845 (11%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S+ AE L +V S YL PKDG+PL+GLIQDHVI+ KL++RD F +++Y++LVY A
Sbjct: 464 SYAALAELESLASVPSHYLGPKDGAPLAGLIQDHVIAAVKLTMRDRFFDQSDYLDLVYHA 523
Query: 69 L----------CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLS 118
L C + TLPP I P LWTGKQV+ST++INLTP D I L
Sbjct: 524 LRSVFDAAKDNCAGPPTLVTLPPAIMWPKRLWTGKQVVSTLLINLTPPDLPYINC--TLR 581
Query: 119 GILDKKQFGS-TQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAE 177
G K + S G + D V + G L+SG+LDK GS+ GL+H V + HG +
Sbjct: 582 GRRTKAELWSGVAPGQATPLSDVDVVVCDGYLVSGMLDKAHIGSSSGGLIHCVHELHGPK 641
Query: 178 HAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL 237
A LL+ ++ L L+ FT+G++D+L+ + + +R++ + R LG A +A L
Sbjct: 642 TAAHLLNGISLLANRLLKFTAFTMGIKDMLLSDDANEQRSRRFVQLRDLGLCAFADAFEL 701
Query: 238 PLD--TDPEIISSQLQEAYA-SIPQFRA----QIDRQYKSLLDKVTNNINQVCLPEGLIE 290
+ T+ E+ Q +A S Q + Q+D K+ L + + + +P GL
Sbjct: 702 DPNSLTEHEVRRLYRQAQFAPSTDQVLSKRILQLDNAMKNRLKRAQDAVCDSAIPSGLYV 761
Query: 291 PFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRA 350
FP NNLQ MV GAKG VN Q+S LGQIELEG+R +M+SGR+LPSF PY+V PRA
Sbjct: 762 GFPENNLQLMVHVGAKGGMVNAQQMSVALGQIELEGRRVPLMLSGRSLPSFPPYDVRPRA 821
Query: 351 GGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTV 410
GG RF+T + PQE FFH MAGR+GL+DTAVKTSRSGYLQR +KHLE L++ YD TV
Sbjct: 822 GGMCTHRFLTSLPPQELFFHSMAGRDGLVDTAVKTSRSGYLQRSAIKHLEDLSIQYDGTV 881
Query: 411 RDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDN-----IKWICSYKVILNLLKKHPL 465
RDS ++IQ YG+DG+DV + +L DN ++W S + ++ +H L
Sbjct: 882 RDSGNNVIQFHYGDDGVDVCQASFLQSAGLHLFADNAALLSMRWYSSNGLNHSIGHQHLL 941
Query: 466 SLALLLLLTFKSSGKPNFIFSPHR-------TKFTMDLLEQWYQLDDKARKKYRKKFKAC 518
PN + P + T+ M L++ + K K +RK +A
Sbjct: 942 G--------------PNALPRPLQQIADQVGTERQMLLMKS--PSEHKIAKLFRKARRA- 984
Query: 519 PQPLISTFQPDAHFGS---ISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPG 575
+ T + + ++ +L D ++ K + + PG
Sbjct: 985 ERSFSETVKQQKQLSAMELLNADLPDPPCVVASA---------LRELCLAKLISAQVPPG 1035
Query: 576 ENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPF 635
E VG+LAAQS+GEPSTQMTLNTFHFAGRG+MNVTLGIPRLREILM + I TP ME+P
Sbjct: 1036 EPVGLLAAQSVGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMSGSPHISTPCMEVP- 1094
Query: 636 LPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCFIPAHMYRD 695
+ + ++ NR+AK M ++ + + + I E ++ + + + ++ PA Y +
Sbjct: 1095 VRSTNEARRRCNRVAKRMYKLKLLEAIH-FPIGETVDYASD---SCTLEIRLQPASAYSE 1150
Query: 696 KTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMN----------IEQSRDQMEDDVE 745
++ V+PS+++ ER +L AKR + LK+ +R Q
Sbjct: 1151 RSHVRPSRVLRFLERILFPDL----AKRLDRELKDQGKTTLIRSFALTALARQQQTGRA- 1205
Query: 746 DDEGEGAEGAGAALGRVDVSSDEERDEED-----AVQSHKKVNQEEDNDFEEPEDEERMS 800
GAEG GAA DEE E++ A +S + ++ ++D E R+
Sbjct: 1206 -----GAEGPGAA------DEDEESAEKEGGNLSAWKSSRARDEWNEDDGHEAIRRRRLE 1254
Query: 801 EREED 805
+ E+
Sbjct: 1255 DEAEE 1259
Score = 112 bits (281), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 54/102 (52%), Positives = 71/102 (69%)
Query: 865 SKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 924
S+ + + +GIN+ I QY + DLN+LY N+I M+ TYGIEAA I +EV VF YG
Sbjct: 1455 SEWIFRVEGINMAEIMQYPAVFDLNRLYTNNIAIMSQTYGIEAARAAIQKEVSGVFGHYG 1514
Query: 925 IEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFE 966
I VD RHLSL+ADYMT SG+Y A NR+ +PS +Q+M+FE
Sbjct: 1515 IYVDSRHLSLIADYMTKSGSYRAFNRSAFIGHPSPLQQMSFE 1556
>gi|330927073|ref|XP_003301728.1| hypothetical protein PTT_13304 [Pyrenophora teres f. teres 0-1]
gi|311323320|gb|EFQ90175.1| hypothetical protein PTT_13304 [Pyrenophora teres f. teres 0-1]
Length = 1797
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 291/776 (37%), Positives = 422/776 (54%), Gaps = 77/776 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL--- 69
+AEA + + QYL G PL GLIQDH+ G +S +DTF TR EY L+Y +L
Sbjct: 657 RAEAMTIADTDHQYLSATAGKPLRGLIQDHISMGVSISNKDTFFTREEYHQLLYSSLRPE 716
Query: 70 --CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
+ + T+ P + KP P+WTGKQ+++T++ N+ P E L K
Sbjct: 717 EGHTTSGRLETVSPAVLKPRPMWTGKQIITTILKNIKP--------AEYQGLTLTSKSST 768
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
+ + VH+ + V ++ G LLSGI+DK Q G T GL++ +++ +G A LS +
Sbjct: 769 NGKLWGVHS-EEQIVIVKDGHLLSGIMDKGQIGPTAGGLINGIYEAYGETIAGRALSIIG 827
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLD----TDP 243
+L T L F+ GV D+++ +E DR R + + KA +LG E A + L + T+P
Sbjct: 828 RLLTKMLHMRAFSCGVEDLILTEEGDRARLEELRKAEKLGFEVASKYVTLDAEKIDPTNP 887
Query: 244 EIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVES 303
E+ + EA + +D + K+++ + LP+ LI+ FP N +Q M S
Sbjct: 888 EL--RRRLEAVLRDDTKQHGLDLLTNTANSKISSAVTAAVLPDKLIKAFPKNQMQAMTGS 945
Query: 304 GAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQ 363
GAKGS VN QISC LGQ LEG+R +M+SG+TLP F P+E S RAGG++ RF+TGI+
Sbjct: 946 GAKGSMVNANQISCNLGQQVLEGRRVPVMISGKTLPCFKPFETSVRAGGYIVNRFLTGIR 1005
Query: 364 PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYG 423
PQE++FH MAGREGLIDTAVKTSRSGYLQRC++K +EGL V YD +VRDSD +++Q LYG
Sbjct: 1006 PQEYYFHMMAGREGLIDTAVKTSRSGYLQRCIIKGMEGLRVEYDTSVRDSDGTMVQFLYG 1065
Query: 424 EDGLDVTKRQYLTD-----KQFSFLEDNIKWICSY-KVILNLLKKHPLSLALLLLLTFKS 477
EDGLD TK++YL D + F L + +Y +V +H A +
Sbjct: 1066 EDGLDTTKQKYLNDFKFQAQNFYSLAQTLHTAEAYPRVASAEAVEHNKKAAKKAKKGDVT 1125
Query: 478 SGKP-NFIFSPHR-TKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSI 535
S P +++P R + T +L Q A+++Y K PD
Sbjct: 1126 SMDPATAVYTPSRHSGSTSELFLQ-------AKREYCDK------------NPDKLLKHK 1166
Query: 536 SENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTL 595
++ ++K T F M+ K L SL PGE VGV+A QSIGEPSTQMTL
Sbjct: 1167 KQDQEGEILKRT-----------FEQMLDLKYLRSLVEPGEAVGVVAGQSIGEPSTQMTL 1215
Query: 596 NTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTR 655
NTFH AG NVTLGIPRLREI+M A+ I TPSM++ P++ K + + AKS+TR
Sbjct: 1216 NTFHLAGHSAKNVTLGIPRLREIVMTASANISTPSMQLYPHPELSK--EDCEKFAKSITR 1273
Query: 656 ITMADVLEKVKIKEWLEISP--EPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFL 713
+ ++ VL+KV + E +Y+++ F P + Y + +++ + + E+KF
Sbjct: 1274 LPLSAVLDKVTVTETFGAGTHYSQARSYKIRLDFYPMNEYTKEYAIRVRDVAESIEKKFC 1333
Query: 714 ----KELEVAIAKRA---------AQGLKNMNIEQSR--DQMEDDVEDDEGEGAEG 754
KE+ + K+ + G+ N+ R +Q D+ ED G EG
Sbjct: 1334 PRLHKEIRKDLKKKGENKSLSTANSAGVPNIGQTAGRSGEQTVDEDEDSFPAGLEG 1389
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 89/141 (63%)
Query: 866 KHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 925
++++ TDG N+ + +Y H++D+N+ NDI M YG+EA I+RE+ NVF+ +GI
Sbjct: 1559 ENIINTDGSNLIAMREYGHIIDVNRTLTNDIAAMLRIYGVEAGRATIVREMHNVFSGHGI 1618
Query: 926 EVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLR 985
VD RHL+L+AD MT G + +R G++ N S KM+FE + ++ A ++ D L+
Sbjct: 1619 NVDHRHLNLIADTMTKGGGFTPFSRIGLKGNVSPFMKMSFETTVGFLKDAVLERDWDELK 1678
Query: 986 APSARVMLGQECRQGTGLFQL 1006
PSAR+++G+ GTG F +
Sbjct: 1679 NPSARIVVGRLGGIGTGAFDV 1699
>gi|189191780|ref|XP_001932229.1| DNA-directed RNA polymerase I subunit RPA1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187973835|gb|EDU41334.1| DNA-directed RNA polymerase I subunit RPA1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 1790
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 294/779 (37%), Positives = 420/779 (53%), Gaps = 77/779 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL--- 69
+AEA + + QYL G PL GLIQDH+ G +S +DTF TR EY L+Y +L
Sbjct: 659 RAEAMTIADTDHQYLSATAGKPLRGLIQDHISMGVSISNKDTFFTREEYHQLLYSSLRPE 718
Query: 70 --CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
+ + T+ P + KP P+WTGKQ+++T++ N+ P E L K
Sbjct: 719 EGHTTSGRLETVSPAVLKPRPMWTGKQIITTILKNIKP--------AEYQGLTLTSKSST 770
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
+ + VH+ + V ++ G LLSGI+DK Q G GL++ +++ +G A LS +
Sbjct: 771 NGKLWGVHS-EEQIVIVKDGHLLSGIMDKGQIGPAAGGLINGIYEAYGETIAGRALSIIG 829
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLD----TDP 243
+L T L F+ GV D+++ +E DR R + + KA +LG E A + L + T+P
Sbjct: 830 RLLTKMLHMRAFSCGVEDLILTEEGDRARLEELRKAEKLGFEIASKYVTLDAEKIDPTNP 889
Query: 244 EIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVES 303
E+ + EA + +D + K+++ + LP+ LI+ FP N +Q M S
Sbjct: 890 EL--RRRLEAVLRDDTKQHGLDLLTNTANSKISSAVTAAVLPDKLIKKFPKNQMQAMTGS 947
Query: 304 GAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQ 363
GAKGS VN QISC LGQ LEG+R +M+SG+TLP F P+E S RAGG++ RF+TGI+
Sbjct: 948 GAKGSMVNANQISCNLGQQVLEGRRVPVMISGKTLPCFKPFETSVRAGGYIVNRFLTGIR 1007
Query: 364 PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYG 423
PQE++FH MAGREGLIDTAVKTSRSGYLQRC++K +EGL V YD +VRD+D +++Q LYG
Sbjct: 1008 PQEYYFHMMAGREGLIDTAVKTSRSGYLQRCIIKGMEGLRVEYDTSVRDADGTMVQFLYG 1067
Query: 424 EDGLDVTKRQYLTD-----KQFSFLEDNIKWICSY-KVILNLLKKHPLSLALLLLLTFKS 477
EDGLD TK++YL D + F L + +Y +V +H A +
Sbjct: 1068 EDGLDTTKQKYLNDFKFQAQNFYSLAQTLHTAEAYPRVASAEAVEHNKKAAKKARKGDVT 1127
Query: 478 SGKP-NFIFSPHR-TKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSI 535
S P +++P R + T +L Q A+++Y C PD
Sbjct: 1128 SMDPATAVYTPSRHSGSTSELFLQ-------AKREY------CDT------NPDKLLKLK 1168
Query: 536 SENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTL 595
++ ++K T F M+ K L SL PGE VGV+A QSIGEPSTQMTL
Sbjct: 1169 KQDPEGEILKRT-----------FEQMLDLKYLRSLVEPGEAVGVVAGQSIGEPSTQMTL 1217
Query: 596 NTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTR 655
NTFH AG NVTLGIPRLREI+M A+ I TPSM++ P++ K E + AKS+TR
Sbjct: 1218 NTFHLAGHSAKNVTLGIPRLREIVMTASANISTPSMQLYPHPELSKEE--CEKFAKSITR 1275
Query: 656 ITMADVLEKVKIKEWLEISP--EPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFL 713
+ ++ VL+KV + E +Y+++ F P + Y + ++K + + E+KF
Sbjct: 1276 LPLSAVLDKVTVTETFGTGTHYSQARSYKIRLDFYPMNEYTKEYAIKVRDVAESIEKKFC 1335
Query: 714 KELEVAIAKRAAQGLKNM-----------NIEQ----SRDQMEDDVEDDEGEGAEGAGA 757
L I K + +N NI Q S +Q D+ ED G EG A
Sbjct: 1336 PRLHKEIRKDLKKKGENKSLSTANSASVPNIGQTAGRSGEQTVDEDEDSFPAGLEGGSA 1394
Score = 112 bits (280), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 89/141 (63%)
Query: 866 KHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 925
++++ T+G N+ + +Y H++D+N+ NDI M YG+EA I+RE+ NVF+ +GI
Sbjct: 1560 ENVINTEGSNLIAMREYGHIIDVNRTLTNDIAAMLRIYGVEAGRATIVREMHNVFSGHGI 1619
Query: 926 EVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLR 985
VD RHL+L+AD MT G + +R G++ N S KM+FE + ++ A ++ D L+
Sbjct: 1620 SVDHRHLNLIADTMTKGGGFTPFSRIGLKGNVSPFMKMSFETTVGFLKDAVLERDWDELK 1679
Query: 986 APSARVMLGQECRQGTGLFQL 1006
PSAR+++G+ GTG F +
Sbjct: 1680 NPSARIVVGRLGGIGTGAFDV 1700
>gi|242774376|ref|XP_002478429.1| DNA-directed RNA polymerase I subunit (Rpa190), putative [Talaromyces
stipitatus ATCC 10500]
gi|218722048|gb|EED21466.1| DNA-directed RNA polymerase I subunit (Rpa190), putative [Talaromyces
stipitatus ATCC 10500]
Length = 1689
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 283/740 (38%), Positives = 411/740 (55%), Gaps = 76/740 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S + + QY+ DG PL GLIQDH+ L+ RDTF EY L+Y L
Sbjct: 640 RAELSMITDADRQYISSTDGKPLRGLIQDHITVSTFLTSRDTFFEEDEYQQLLYSCLRPE 699
Query: 73 NT-----EIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
N I+ + P +P LWTGKQV+STV+ N+ P + R G L G K
Sbjct: 700 NANTVTDRIQLVEPAFIRPRRLWTGKQVISTVLKNIMPPN----RRGLNLQG---KSSTP 752
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
++G + + V + GELL GILDKKQ G++ G + A+ + +G A SLLS L
Sbjct: 753 GERWGKDNE--EDSVIFKDGELLCGILDKKQIGASGGGFIDAIHEIYGNAIAGSLLSILG 810
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL----PLDTDP 243
+L T +L F+ G+ D+ + E DRKR I+ KA LG + + L D D
Sbjct: 811 RLLTRFLNMRAFSCGIEDLRLTPEGDRKRVDILEKAATLGRNVSLKYVTLDQNPAADQDA 870
Query: 244 EIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVES 303
E+ +L++ Q ++ +D Y S K+T++I CLP GLI+ FP N +Q M +
Sbjct: 871 EL-RRRLEDVLRD-DQKQSGLDSVYNSQTRKLTSDIAASCLPHGLIKQFPWNQMQLMTTT 928
Query: 304 GAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQ 363
GAKGS+VN ISC LGQ LEG+R +MVSG+TLPS+ +E P+AGG+V GRF+TGI+
Sbjct: 929 GAKGSSVNANLISCNLGQQVLEGRRVPVMVSGKTLPSYRAFETHPQAGGYVCGRFLTGIK 988
Query: 364 PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDS--DLSLIQVL 421
PQE++FH MAGREGLIDTAVKT++SGYLQRCL+K +E + V YD +VRD+ S+IQ +
Sbjct: 989 PQEYYFHTMAGREGLIDTAVKTAKSGYLQRCLIKGMEAVKVEYDSSVRDTANGGSVIQFI 1048
Query: 422 YGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKP 481
YGEDGLDV K+ +L + FSFL +N S LN+ + F + KP
Sbjct: 1049 YGEDGLDVGKQVHL--QNFSFLANN---YVSTMAQLNMTQD------------FHALEKP 1091
Query: 482 NFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKA-CPQPLISTFQPDAHFGSISENLA 540
+ QW++ A K+ RK + P ++ +QP H+GS+SE +
Sbjct: 1092 EVL--------------QWHK---DAMKQVRKTGRLDAKDPTLAVYQPGGHYGSVSEAFS 1134
Query: 541 DSVVKYTK------------GRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGE 588
++ KY + G T A F ++ K L S+ +PG+ VG++A QSIG
Sbjct: 1135 LALKKYEERNPDKLLKDKKAGITGALSKKAFESVMHMKYLNSVIDPGDAVGIVAGQSIGS 1194
Query: 589 PSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANR 648
+TQMTLNTFH AG NVTLG+PRLREI+M A+K TP+M + + ++ EK
Sbjct: 1195 QTTQMTLNTFHLAGHSARNVTLGVPRLREIVMTASKKPMTPTMTVEVIEELS--EKAGQS 1252
Query: 649 LAKSMTRITMADVLEKVKIKEWLEISPEPHMN-YQMKFCFIPAHMYRDKTSVKPSKII-- 705
AK ++R+++A+V++ ++++E Y + F A Y ++ ++ ++
Sbjct: 1253 FAKGISRLSIAEVIDTLQVRESTTSGKGVKAKIYDIDMKFFDAKEYFEEYAITKRDLVRA 1312
Query: 706 --DHFERKFLKELEVAIAKR 723
D F KF+K++ + KR
Sbjct: 1313 LQDEFIPKFIKKIRAELKKR 1332
>gi|145356916|ref|XP_001422669.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582912|gb|ABP00986.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 1663
Score = 454 bits (1168), Expect = e-124, Method: Compositional matrix adjust.
Identities = 277/729 (37%), Positives = 411/729 (56%), Gaps = 62/729 (8%)
Query: 10 HFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL 69
H +AEA +M+ Q+ VP DG PL GLIQDH+ SG LS+RD+F R+E+ L+Y L
Sbjct: 616 HLGRAEAYEIMHGDRQFTVPTDGKPLRGLIQDHICSGLLLSMRDSFFDRSEFTQLLYSGL 675
Query: 70 CIL----NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQ 125
+ +I P + KP LWTGKQV++ V+ ++T + +
Sbjct: 676 VDYCGDEHGKIDVPAPALLKPKALWTGKQVIAAVLSHITRGRPPLTFSAPCK---IPATF 732
Query: 126 FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSC 185
FG G + + IR SG++DK FG +YGLVHAV + HG A +LLS
Sbjct: 733 FGGEDSG------EDRLIIRRNYFCSGVVDKNMFG--KYGLVHAVAELHGRSTAGALLSI 784
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEI 245
++LFT +LQ+ GFT G+ D+++ + ++ R +NKA + A + +D E+
Sbjct: 785 FSRLFTNFLQKHGFTCGIDDLILTADAEKDRVVELNKADEMCKTATADVAEASGKSDEEV 844
Query: 246 ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGA 305
+++ + P++ AQ+D + L+KVT+ + CLP G +PF N L M SGA
Sbjct: 845 MTA-IAAKLLENPEWGAQLDMKASGALNKVTSATVKKCLPFGTKKPFSKNCLSIMTISGA 903
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS VN QI+ LGQ ELEG+R M SG+TLPSF P+++S RA G++ RF +G+ P
Sbjct: 904 KGSLVNFSQIAAALGQQELEGRRVPRMPSGKTLPSFEPFDISSRANGYIACRFFSGLDPA 963
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
E+FFHCMAGREGL+DTAVKT+RSGYLQRCLVK+LE + VHYD TVRDSD S++Q YGED
Sbjct: 964 EYFFHCMAGREGLVDTAVKTARSGYLQRCLVKNLESMRVHYDFTVRDSDGSIVQFQYGED 1023
Query: 426 GLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIF 485
+DVT+ YL ++F FL +N + I +LN + ++++L
Sbjct: 1024 CVDVTRSGYL--EKFEFLAENPELI-----LLN----NEAAISML--------------- 1057
Query: 486 SPHRTKFTMDLLEQWYQLDDKAR---KKYRKKFKACPQPL---ISTF---QPDAHFGSIS 536
P K + +LE + ++ R + + + P+ + TF +P ++
Sbjct: 1058 -PKLNKKKVSVLETIGRKEELPRFCMENFGDQLGVLPEKFGDELKTFIDSRPKGYWAEEK 1116
Query: 537 ENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLN 596
+S + G T ++F ++ + L +A PGE VGV+AAQS+GEPSTQMTLN
Sbjct: 1117 GKKNESSLAAKSGLT----AEEFAMLMNMRYLTYVAPPGEAVGVIAAQSVGEPSTQMTLN 1172
Query: 597 TFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRI 656
TFHFAGRG+ NVTLGIPRLRE+LM A+K + TP M +P P + ++ A L + + R+
Sbjct: 1173 TFHFAGRGEANVTLGIPRLRELLMAASKKLLTPVMILPLKPGC-RTKENAETLCRRLRRV 1231
Query: 657 TMADVLEK--VKIKEWLEISPEPHMN--YQMKFCFIPAHMYRDKTSVKPSKIIDHFERKF 712
+A+++ K +K+K++ I P+ ++ Y + D V ++ + +RKF
Sbjct: 1232 ILAELITKLCIKVKDY-GIGPDEGLSRLYTVVIQMREGQNDDDPNEVTFAEFLHAVKRKF 1290
Query: 713 LKELEVAIA 721
K L I
Sbjct: 1291 AKMLVARIG 1299
Score = 112 bits (279), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 84/140 (60%)
Query: 869 LKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 928
++TDGIN L+++N + N + + T+G+EA ++ EV+ VF VYGI VD
Sbjct: 1503 IQTDGINFGAAWANSDLIEVNSMKSNSVWDIMQTFGVEAGRSTLVSEVQAVFGVYGIGVD 1562
Query: 929 PRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPS 988
RHLSL+ D+MT G Y NR+GI + S KM++E + A+++G D L +PS
Sbjct: 1563 TRHLSLIGDFMTQQGEYRPCNRSGIEKSTSPFLKMSYETATAFLTDATIRGETDDLSSPS 1622
Query: 989 ARVMLGQECRQGTGLFQLRN 1008
+R+++G+ GTG F L++
Sbjct: 1623 SRIVVGRTVDLGTGSFSLKH 1642
>gi|440295347|gb|ELP88260.1| DNA-directed RNA polymerase I subunit RPA1, putative [Entamoeba
invadens IP1]
Length = 1566
Score = 454 bits (1167), Expect = e-124, Method: Compositional matrix adjust.
Identities = 269/670 (40%), Positives = 382/670 (57%), Gaps = 79/670 (11%)
Query: 25 QYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCILNTEIR-TLP-PT 82
QY+VPK+G PL GLIQDH+IS L+ R+TF R ++ +V AL +N +LP PT
Sbjct: 597 QYVVPKNGQPLRGLIQDHIISSFMLTKRNTFFNREQFCQIVSDALYGVNESYSISLPTPT 656
Query: 83 IWKPMPLWTGKQVLSTVI---------INLTPKDKVIIRH-GELLSGILDKKQFGSTQYG 132
I KP LWTGKQV+S ++ IN T K KV GE ++K+ + + G
Sbjct: 657 ILKPTMLWTGKQVVSAILLHVGTNQPHINFTGKCKVSTNEIGEGGYQTEEQKKLRTQKDG 716
Query: 133 LVHAVWD----THVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAK 188
WD + I+ L++G LDK Q G++ GL+H +++ + A+ A LS ++
Sbjct: 717 FREK-WDGANDSQCIIKESVLITGTLDKNQIGASNGGLIHCIYELYNAKTAGLCLSIFSR 775
Query: 189 LFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLP----LDTDPE 244
L T YLQRVG T + D ++ E D KRT+++NKA + A GL D D
Sbjct: 776 LLTNYLQRVGHTCSLDDCMLTPEFDAKRTELLNKANEVSRAATAKHFGLTGRSKFDIDVA 835
Query: 245 IISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESG 304
+++ + A +D KS ++ T+ + + C+P G ++ FP N L M +G
Sbjct: 836 FSNARRRVESAK------DLDNAVKSEVNDCTSLVIKECIPNGQLKAFPWNCLALMTTTG 889
Query: 305 AKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQP 364
AKGS VN QI+CLLGQ ELEG+R +M +G+TLPSF Y+ S +AGGF+ RF+TG+ P
Sbjct: 890 AKGSKVNHSQITCLLGQQELEGRRVPIMATGKTLPSFPRYDASAKAGGFIAARFLTGVPP 949
Query: 365 QEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGE 424
QEF+FHCMAGREGLIDTAVKT+ SGYLQRC++K +E L V YD TVR+SD S++Q +YG+
Sbjct: 950 QEFYFHCMAGREGLIDTAVKTANSGYLQRCIIKMMESLHVEYDYTVRESDGSIVQFMYGD 1009
Query: 425 DGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFI 484
DG+DV K +L + F W +YK I+ K S+A +K + K +
Sbjct: 1010 DGIDVMKSAFLNNIDF--------WAKNYKAIVT--KYDTASIARSFKDGYKEAMKLHRD 1059
Query: 485 FSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISE---NLAD 541
S H K P++S + P + + SE NL +
Sbjct: 1060 CSKHPEKH---------------------------DPVLSVYSPGNNLAACSEKYYNLVN 1092
Query: 542 SVVK------YTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTL 595
+K + +GR D KF M+ + L NPGE VG++A QSIGEPSTQMTL
Sbjct: 1093 QYIKEDKNKDFKEGRLDEK---KFRTMMMVRYNKCLVNPGEPVGIVAGQSIGEPSTQMTL 1149
Query: 596 NTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTR 655
NTFH AGRGD+NVTLG+PR++E++M A + I TPSM + +L D P +K LAK +T+
Sbjct: 1150 NTFHLAGRGDVNVTLGMPRMKELVMFAKRNISTPSM-VLYLND-PN-QKNTEDLAKKLTK 1206
Query: 656 ITMADVLEKV 665
+T+ +++E +
Sbjct: 1207 VTLDNIVEGI 1216
Score = 126 bits (317), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 97/154 (62%)
Query: 855 LPSNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIR 914
LP ++ ++ + + T+G+N+ ++++ +D+N + ND++ ++ TYG+EAA V+I
Sbjct: 1406 LPLTKKKDGKTLYYVMTEGVNLRKMAEFAEYVDVNTIESNDVYAVSQTYGVEAARAVLIN 1465
Query: 915 EVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQ 974
E+ VF YGIEVD RHL+LV D M G Y +NR+G+ NPS K+TFE L + +
Sbjct: 1466 EIGGVFRAYGIEVDSRHLNLVGDAMMFEGEYKPLNRSGMDSNPSVFTKITFETSLSFLAK 1525
Query: 975 ASMQGREDSLRAPSARVMLGQECRQGTGLFQLRN 1008
A M G+ D+L +PS+ + LG+ GTG F L N
Sbjct: 1526 ACMSGQIDNLHSPSSTLTLGKHTTFGTGSFDLLN 1559
>gi|320594279|gb|EFX06682.1| DNA-directed RNA polymerase 1 subunit [Grosmannia clavigera kw1407]
Length = 2662
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 281/747 (37%), Positives = 406/747 (54%), Gaps = 72/747 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL--- 69
+ EA L + QYL G PL GLIQDH+ L +DTF R Y L+Y AL
Sbjct: 1584 RVEALQLADTDHQYLSGTQGKPLRGLIQDHLSISVALCSKDTFFPRGAYQELIYSALRPG 1643
Query: 70 --CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL-LSGILDKKQF 126
I+ I +PP I KP+P WTGKQV++T++ N+ P + HG+L +SG K Q
Sbjct: 1644 SGHIMGERIELVPPAILKPVPRWTGKQVITTILKNIKP-----VTHGDLWMSG---KCQV 1695
Query: 127 GSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCL 186
++G H T + + G L++GILDK G + G +HA+ + +GA A LLS +
Sbjct: 1696 PGGRWG-THTEEGTAI-FQDGVLVTGILDKAHLGPSSGGFIHAIHEVYGAAVAGKLLSSM 1753
Query: 187 AKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL----PLDTD 242
+L T L FT G+ D+ + E + R + + A G E A + L P D
Sbjct: 1754 GRLLTKLLNMRAFTCGMDDLRLTTEGEANRRRELKAAEGAGLEVAAAYVSLQEQKPTSKD 1813
Query: 243 PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
PE++ +L+E + + +D + V++ + + CLP+GL + FP N++Q M
Sbjct: 1814 PELLH-RLEEVMRDDSK-QEGLDVLMNNKSSSVSSGVTKACLPDGLEKAFPHNHMQSMTT 1871
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
SGAKG VN ISC LGQ LEG+R +MVSG++LP F Y+ S RAGG++ RF+TGI
Sbjct: 1872 SGAKGGGVNANLISCNLGQQVLEGRRVPLMVSGKSLPCFPEYDSSLRAGGYIVNRFLTGI 1931
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
+PQE++FH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL V YD +VRD+D S++Q LY
Sbjct: 1932 RPQEYYFHHMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKVAYDTSVRDADGSVVQFLY 1991
Query: 423 GEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPN 482
GEDGLDVTK++YLTD FSFL N+ SY
Sbjct: 1992 GEDGLDVTKQKYLTD--FSFLLRNLDSQMSY----------------------------- 2020
Query: 483 FIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADS 542
FS RT + E++ + + KK +P+ S P H ++SE +
Sbjct: 2021 MKFSDPRTAALFEHREEFAKQTKRMIKKAGSSPTFAEEPVNSLVNPARHAYAMSEKFFSA 2080
Query: 543 VVKYTKGRTD--------------ASHVDKFYDMIFY-KNLLSLANPGENVGVLAAQSIG 587
+ Y + D A+ K + +F K L S PGE+VG++A QS+G
Sbjct: 2081 MSTYIRENKDRLVKDKKEQQTGGPAAMGRKSVERVFAAKYLRSQVEPGESVGIVAGQSVG 2140
Query: 588 EPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKAN 647
EPSTQMTLNTFH AG NVTLGIPRLREILM A+ I TP+M + + ++A
Sbjct: 2141 EPSTQMTLNTFHLAGHSAKNVTLGIPRLREILMTASAKISTPAMTLVLKEGL--AHEQAE 2198
Query: 648 RLAKSMTRITMADVLEKVKIKEWL--EISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKII 705
+ AKS++ + ++ VL+++ ++E + + + ++ P+ Y +V+ ++++
Sbjct: 2199 QFAKSISLLPLSHVLDEITVRERVGKGVGYAVAKMFDVRLRLFPSAEYTTTYAVEVAQVL 2258
Query: 706 DHFERKFLKELEVAIAKRAAQGLKNMN 732
D E++ + L +AK Q K+ N
Sbjct: 2259 DAVEKRLMPTLRKLMAKALKQHEKSSN 2285
Score = 110 bits (276), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 86/151 (56%)
Query: 859 LFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKN 918
L E K ++ T G NV + + ++D +++ NDI + YG+EA IIRE+
Sbjct: 2497 LSGEMVKKPVVHTVGTNVRAMQSFSDVIDTDQISTNDIVSVLEIYGVEACRNTIIRELNA 2556
Query: 919 VFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQ 978
VF +GI VD RHL+L+ DYMT G ++ NR G++ N S KM+FE L ++ A +
Sbjct: 2557 VFGSHGISVDHRHLNLIGDYMTRGGGFMPFNRYGLKGNVSPFTKMSFETTLAFLKDALID 2616
Query: 979 GREDSLRAPSARVMLGQECRQGTGLFQLRNR 1009
D L PS+R+++G+ + GTG F + R
Sbjct: 2617 ADWDGLTTPSSRIVMGRLSKTGTGSFDVLTR 2647
>gi|451853513|gb|EMD66807.1| hypothetical protein COCSADRAFT_35290 [Cochliobolus sativus ND90Pr]
Length = 1781
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 277/733 (37%), Positives = 393/733 (53%), Gaps = 80/733 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL--- 69
+AEA + + QYL G PL GLIQDH+ G LS +DTF TR +Y L+Y L
Sbjct: 658 RAEAMTIADTDHQYLSATAGKPLRGLIQDHISMGVWLSNKDTFFTRDQYHQLLYSCLRPE 717
Query: 70 --CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
+ + T+ P I KP P+WTGKQ+++TV+ N+ P E + L K
Sbjct: 718 DGHTTSGRLETVAPAILKPRPMWTGKQIITTVLKNIKP--------AEYQNLTLSSK--- 766
Query: 128 STQYGLVHAVWDTH-----VTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISL 182
S+ G +W H V ++ G LL+GI+DK Q G GL++ +++ +G A
Sbjct: 767 SSTNG---KLWGAHSEEQFVIVKDGALLTGIMDKGQIGPAAGGLINGIYEAYGETIAGRA 823
Query: 183 LSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLD-- 240
LS + +L T L F+ GV D+++ + + R + KA ++G E A + L +
Sbjct: 824 LSIIGRLLTKMLHMRAFSCGVEDLILTGQGEEARLVELRKAEKIGFEVASKYVTLNAEKI 883
Query: 241 --TDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQ 298
T+PE+ + EA + +D + K+++ + LP+ LI+ FP N +Q
Sbjct: 884 DPTNPEL--RRRLEAVLRDDTKQHGLDLLTNTANSKISSAVTAAVLPDKLIKAFPKNQMQ 941
Query: 299 FMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRF 358
M SGAKGS VN QISC LGQ LEG+R +M+SG+TLP F P+E S RAGG++ RF
Sbjct: 942 AMTGSGAKGSMVNANQISCNLGQQVLEGRRVPVMISGKTLPCFKPFETSVRAGGYIVNRF 1001
Query: 359 MTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLI 418
+TG++PQE++FH MAGREGLIDTAVKTSRSGYLQRC++K +EGL V YD +VRDSD S++
Sbjct: 1002 LTGVRPQEYYFHMMAGREGLIDTAVKTSRSGYLQRCIIKGMEGLRVEYDTSVRDSDGSMV 1061
Query: 419 QVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSS 478
Q LYGEDGLD TK++YL D F F N + L+ + +P
Sbjct: 1062 QFLYGEDGLDTTKQKYLND--FKFQAQNFYSLAQ---ALHTAEAYPR------------- 1103
Query: 479 GKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISEN 538
+ S + ++ + D A P+ + + P H GS SE
Sbjct: 1104 -----VSSAEAAEHNKKATKKAKKGD-----------IAAMDPVTAVYTPSRHSGSTSET 1147
Query: 539 LADSVVKYTKGRTDASHVDK------------FYDMIFYKNLLSLANPGENVGVLAAQSI 586
+ +Y D +K F M+ K L SL PGE VGV+A QSI
Sbjct: 1148 FLQAKREYCDKNPDKLLKNKKKDEEGEILKRTFEQMLDLKYLRSLVEPGEAVGVVAGQSI 1207
Query: 587 GEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKA 646
GEPSTQMTLNTFH AG NVTLGIPRLREI+M A+ I TPSM++ P ++
Sbjct: 1208 GEPSTQMTLNTFHLAGHSAKNVTLGIPRLREIVMTASANISTPSMQL--YPHSELSKEDC 1265
Query: 647 NRLAKSMTRITMADVLEKVKIKEWLEISPE--PHMNYQMKFCFIPAHMYRDKTSVKPSKI 704
+ AKS+TR+ ++ VL+KV + E L + Y+++ F PA Y + ++K +
Sbjct: 1266 EKFAKSITRLPLSAVLDKVTVTETLGAGTQFSQARTYKIRLDFYPAKEYTKEYAIKVRDV 1325
Query: 705 IDHFERKFLKELE 717
+ E+KF L+
Sbjct: 1326 AESIEQKFCPRLQ 1338
Score = 113 bits (282), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 89/141 (63%)
Query: 866 KHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 925
++++ T+G N+ + +Y H++D+N+ NDI M YG+EAA I+RE+ VF+ +GI
Sbjct: 1554 ENVINTEGSNLIAMREYAHIIDVNRTMTNDIVAMLHLYGVEAARATIVREMHAVFSGHGI 1613
Query: 926 EVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLR 985
VD RHL+L+AD MT G + NR G++ N S KM+FE + ++ A ++ D L+
Sbjct: 1614 SVDQRHLNLIADTMTKGGGFSPFNRIGMKGNVSPFMKMSFETTVGFLKDAVLEHDWDELK 1673
Query: 986 APSARVMLGQECRQGTGLFQL 1006
PSAR+++G+ GTG F +
Sbjct: 1674 NPSARIVVGRLSTVGTGAFDV 1694
>gi|145529488|ref|XP_001450527.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124418149|emb|CAK83130.1| unnamed protein product [Paramecium tetraurelia]
Length = 1696
Score = 450 bits (1158), Expect = e-123, Method: Compositional matrix adjust.
Identities = 279/693 (40%), Positives = 386/693 (55%), Gaps = 104/693 (15%)
Query: 25 QYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL----NTEIRTLP 80
QY+ +G PL L+QD ++S L+LRDTFLT+ +YM L+Y A+ L + +I L
Sbjct: 690 QYISQTNGKPLRELMQDMIVSSVFLTLRDTFLTKQQYMQLIYTAIWSLFEKNSQKIELLQ 749
Query: 81 PTIWKPMPLWTGKQVLSTVI---INLTPKDKVIIRHGELLSGILDKKQFGSTQYGLVHAV 137
P I KP LWTGKQ++S +I + L D I + E + K+ G A
Sbjct: 750 PAILKPKQLWTGKQLISNIIKIIVGLNGYDPDIGLNLESKCKLSSKELPGM-------AS 802
Query: 138 WDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQR 196
D V I+ ELL GI+DK Q GS YG++HA + +G + LL+ A+LF YLQ
Sbjct: 803 DDIQVLIKDNELLLGIVDKNQVGSGADYGMMHAFHELYGPKMTGQLLTGFARLFAAYLQY 862
Query: 197 VGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALG----LP-------------- 238
GFT G+ D++V + D KR +I + + G A G +P
Sbjct: 863 HGFTCGMDDLIVDELHDEKRRVLIEENLKKGVRQAAEYCGYNSQIPESINLFNRSNFVFE 922
Query: 239 ---------------LDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVC 283
L D +I + Q+ Q A +D++YK + KVT+ I
Sbjct: 923 NGQYNHPKYLQDVHYLQYDHQIYEALRQKILIEKHQEEA-LDQEYKKAMTKVTSEIVGST 981
Query: 284 LPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLP 343
L GL + FP N M +GAKGS VN Q+S LLGQ ELEG+R +M +GR+LPSFLP
Sbjct: 982 LG-GLQKLFPLNLFSMMTMTGAKGSNVNHSQVSALLGQQELEGRRVPLMPTGRSLPSFLP 1040
Query: 344 YEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLT 403
Y+ +PRAGG+V RF+TG++PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEGL
Sbjct: 1041 YDPNPRAGGYVADRFLTGLRPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLI 1100
Query: 404 VHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKH 463
V YD+TVRD+D SLIQ+ YGEDG+D TK +YL ++FSFL N +H
Sbjct: 1101 VQYDLTVRDNDGSLIQLFYGEDGIDTTKTKYL--EKFSFLAQN--------------NQH 1144
Query: 464 PLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLI 523
++ + + ++Q ++ D A + L+
Sbjct: 1145 ------------------------YKQLYRVQEMKQHFKTLDGASVELEN------DTLM 1174
Query: 524 STFQPDAHFGSISENLADSVVKYTKGRTDASHVDK-----FYDMIFYKNLLSLANPGENV 578
+ F P + G++S + ++ +Y + + K F + + L +L +PGE V
Sbjct: 1175 NAFNPSQNLGAVSMKVQSTMNEYLQKCQNELQQKKISNKQFKSLANIRYLRALMHPGEAV 1234
Query: 579 GVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPD 638
G +AAQSIGEPSTQMTLNTFH AG G+ NVTLGIPRLREILM ATK KTP+M + FL
Sbjct: 1235 GCVAAQSIGEPSTQMTLNTFHLAGHGEKNVTLGIPRLREILMTATKKQKTPTMSLQFLN- 1293
Query: 639 MPKLEK-KANRLAKSMTRITMADVLEKVKIKEW 670
+EK +A+R AK M+++ +++ +K++E+
Sbjct: 1294 -ANIEKSQADRYAKRMSKLVFLELVNNIKVREY 1325
>gi|294942134|ref|XP_002783393.1| DNA-directed RNA polymerase I largest subunit, putative [Perkinsus
marinus ATCC 50983]
gi|239895848|gb|EER15189.1| DNA-directed RNA polymerase I largest subunit, putative [Perkinsus
marinus ATCC 50983]
Length = 1549
Score = 450 bits (1157), Expect = e-123, Method: Compositional matrix adjust.
Identities = 297/829 (35%), Positives = 437/829 (52%), Gaps = 101/829 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL--- 69
+AEA ++ + QYL P G PL GLIQDHV+SG L+ RD F+ + E NL+Y A+
Sbjct: 443 RAEAIYIASADHQYLGPTSGKPLRGLIQDHVVSGVFLTARDHFMRKTEVQNLIYTAMRAA 502
Query: 70 --------CILNTEIRTL--PPTIWKPMPLWTGKQVLSTVIINLT-----PKDKVIIRH- 113
+ + R + PP I KP LWTGKQV++ + +L DK I+
Sbjct: 503 IEGDTSGIAGVPKDFRIVMEPPVIVKPQTLWTGKQVITIFLKSLIKFATHSTDKAIVNGF 562
Query: 114 ---------GELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQY 164
G+L G+ D + + VTIR EL+ G+LDK FG+T
Sbjct: 563 NHHAKAKTPGDLWGGVSDGNK------------EEQMVTIRDTELIEGVLDKASFGATAN 610
Query: 165 GLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKAR 224
GL H ++ G + A LL+ + ++ T+YLQ GFT +RD+L+ E D R +++ KAR
Sbjct: 611 GLTHLFYELCGPKAAGLLLTGMGRMLTLYLQYHGFTCAMRDLLITPEGDEARLQMLRKAR 670
Query: 225 RLGTEAACNAL------GLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNN 278
E + N + P + + + + +E S +A ++ +
Sbjct: 671 ----EDSWNKIRDWVNENSPEEANVKTLHKLQKEIERSGMNDQASCMQRTLRFNTPCSKK 726
Query: 279 INQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTL 338
+ + P+G + PFP N MV +GAKGS VN I +LGQ ELEG R M + R L
Sbjct: 727 LIDILFPKGQVSPFPDNCFSAMVSTGAKGSKVNHSMIDAMLGQQELEGHRAPRMRNQRFL 786
Query: 339 PSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKH 398
PSF Y++ PRAGG++ RF+TG +PQEFF+HCMAGREGL+DTAVKT+RSGYLQRCLVK+
Sbjct: 787 PSFAQYDIGPRAGGYITDRFLTGYRPQEFFYHCMAGREGLVDTAVKTARSGYLQRCLVKN 846
Query: 399 LEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILN 458
LEG+T++YD TVRD+D S+++ LYGEDG+DVTK +L +QF L++N ++ +
Sbjct: 847 LEGITINYDYTVRDTDSSIVEFLYGEDGMDVTKVSHL--EQFDVLDENSAFMAKSAAVAK 904
Query: 459 LLKKHPLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKAC 518
K +L L K + KP S RTK DL+++ DK R + ++
Sbjct: 905 EEAKMESNLPALYR---KWAEKPQ---SGRRTK---DLVKE-VNASDKLRDEEKEHIAFV 954
Query: 519 PQ----------PLISTFQPDAHFGSISENLADSVVKYTKGRTDASH----VDKFYDMIF 564
+ P+ S P G++SE +++ +Y R + ++F D+I
Sbjct: 955 VKDTHTNGGKAPPMNSMLPPWRFTGAMSEREENALTEYLSHRPEELEKKMPTEEFRDVIM 1014
Query: 565 YKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATK 624
+K +LA+PGE VG LAAQ +GEPSTQMTLNTFH AG G +NVTLGIPRLREI+ A++
Sbjct: 1015 HKYARTLADPGEAVGTLAAQGMGEPSTQMTLNTFHLAGHGGVNVTLGIPRLREIVQTASR 1074
Query: 625 AIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWL---EISPEPHMNY 681
++TP+ME P L + K A L MTR+++ DV+ + E + + S E Y
Sbjct: 1075 HLETPAMEFPVLGGV----KVAEELKGKMTRVSLKDVVVATHVLESVTAAQPSGETMRTY 1130
Query: 682 QMKFCFIPAHMYRDKTSVKPSKIIDHF------------ERKFLK--ELEVAIAKRAAQ- 726
++ + M + I HF +KF+K E I R AQ
Sbjct: 1131 ELVVELVDPVMIQKAYPSLSQTAIAHFLDHDFRDKLNSNLKKFIKISESTSTITSRKAQQ 1190
Query: 727 --GLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEE 773
G ++ E D+ + + D+G+ ++ L + ++DEER+ E
Sbjct: 1191 EEGAADVFNEIPEDENNAE-QKDQGDESQNVTRTLAQRARATDEEREAE 1238
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 89/145 (61%), Gaps = 1/145 (0%)
Query: 863 KESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 922
+ K ++T+G+N++ I+ +D +++ NDI + YG+EAA I++EV VF
Sbjct: 1377 QSDKVTIETEGVNLD-IAWGLDGIDHDRIVTNDIGLILDRYGVEAARAAIVQEVLRVFGH 1435
Query: 923 YGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGRED 982
YGI VDPRHL L++DYMTH G + +R G+ + S +MTFE + + +A + D
Sbjct: 1436 YGIGVDPRHLMLISDYMTHHGGFRPFSRRGMEAHASPWLQMTFETSVNFLTKACNNAQYD 1495
Query: 983 SLRAPSARVMLGQECRQGTGLFQLR 1007
+L++P+ +++G++ GTG F LR
Sbjct: 1496 TLKSPAGSIIVGKQASVGTGCFDLR 1520
>gi|308811186|ref|XP_003082901.1| RNA polymerase I, large subunit (ISS) [Ostreococcus tauri]
gi|116054779|emb|CAL56856.1| RNA polymerase I, large subunit (ISS) [Ostreococcus tauri]
Length = 1789
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 270/680 (39%), Positives = 389/680 (57%), Gaps = 67/680 (9%)
Query: 10 HFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL 69
H +AEA +M+ Q+ VP DG PL GLIQDH+ SG LS+RD FL R+E+ L+Y AL
Sbjct: 746 HLGRAEAYEIMHGDRQFTVPTDGKPLRGLIQDHICSGLILSMRDRFLNRSEFTQLLYSAL 805
Query: 70 CILNTE----IRTLPPTIWKPMPLWTGKQVLSTVIINLT-PKDKVIIRHGELLSGILDKK 124
E I PP + KP LWTGKQ++ I ++T + + + G
Sbjct: 806 VDYCGETHGTIEVPPPALLKPQRLWTGKQLIGAAITHITRGRPPMTFSAPCKIPGTF--- 862
Query: 125 QFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLS 184
FG G + + IR +G++DK FG +YGLVHAV + HG A +LLS
Sbjct: 863 -FGGEDSG------EDRLVIRRNYFCTGVVDKNMFG--KYGLVHAVAELHGRSVAGALLS 913
Query: 185 CLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPE 244
+LFT +LQ+ GFT G+ D+++ ++ ++ R + KA A + +D +
Sbjct: 914 IFTRLFTTFLQKHGFTCGIDDLILTEQAEQDRLDELEKADEACKTATADVAEATGKSDEQ 973
Query: 245 I---ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMV 301
+ ++++L+E A + AQ+D + L+KVT+ + CLP G + F N L M
Sbjct: 974 VMRAVAAKLRENAA----WGAQLDMKASGALNKVTSATVKKCLPLGTKKMFSKNCLSLMT 1029
Query: 302 ESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTG 361
SGAKGS VN QI+ LGQ ELEG+R M SG+TLP F Y+VS RA G++ RF +G
Sbjct: 1030 ISGAKGSLVNFSQIAAALGQQELEGRRVPRMPSGKTLPCFEAYDVSARANGYIACRFFSG 1089
Query: 362 IQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVL 421
+ P E+FFHCMAGREGL+DTAVKT+RSGYLQRCLVK+LE L VHYD TVRD D S++Q
Sbjct: 1090 LDPPEYFFHCMAGREGLVDTAVKTARSGYLQRCLVKNLESLRVHYDYTVRDCDGSIVQFQ 1149
Query: 422 YGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKP 481
YGED +DVT+ YL ++F FL +N + L++L KS+
Sbjct: 1150 YGEDSVDVTRSGYL--QKFEFLAENPE---------------------LIMLNNKSA--- 1183
Query: 482 NFIFSPHRTKFTMDLLEQWYQLDDKAR---KKYRKKFKACPQPL---ISTF---QPDAHF 532
P K + ++++ + +D R + + + P+ + TF +P ++
Sbjct: 1184 -ISTLPTLNKKNVKVIDEISRKEDIPRFATENFGNQLGVLPEKFSVELKTFIDSRPKGYW 1242
Query: 533 GSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQ 592
++ ++ + G T A +M+F N+ A PGE VGV+AAQS+GEPSTQ
Sbjct: 1243 ADEKGDIKNASLAAKSGVT-AEEFATLMNMMFLSNV---APPGEAVGVVAAQSVGEPSTQ 1298
Query: 593 MTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKS 652
MTLNTFHFAGRG+ NVTLGIPRLRE+LM A++ + TP M +P + ++ AN L +
Sbjct: 1299 MTLNTFHFAGRGEANVTLGIPRLRELLMAASRKLLTPVMVLPLRKGY-RSKEHANTLCRR 1357
Query: 653 MTRITMADVLEK--VKIKEW 670
+ R+ +A+++EK VKIK++
Sbjct: 1358 LRRVVLAELMEKLSVKIKDY 1377
Score = 109 bits (272), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 86/140 (61%)
Query: 869 LKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 928
++TDGI+ L+D++ + N + + T+G+EA ++ EV+ VF+VYGI VD
Sbjct: 1635 VQTDGISFRAAWANSDLIDVDMIKSNSVWDIMQTFGVEAGRATLVSEVQAVFSVYGIGVD 1694
Query: 929 PRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPS 988
RHLSL+ D+MT G Y NR+GI + S KM++E + +A+++G D L +PS
Sbjct: 1695 ARHLSLIGDFMTQQGEYRPCNRSGIEKSISPFLKMSYETATAFLTEATIRGETDDLSSPS 1754
Query: 989 ARVMLGQECRQGTGLFQLRN 1008
+R+++G+ GTG F L++
Sbjct: 1755 SRIVVGRTVNLGTGSFSLKH 1774
>gi|356498537|ref|XP_003518107.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
RPA190-like [Glycine max]
Length = 1568
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 354/1105 (32%), Positives = 528/1105 (47%), Gaps = 192/1105 (17%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVY------ 66
+AEA ++N ++QY+ P G P+ LIQDH++S A L+ +DTFL+ E+ L+Y
Sbjct: 539 RAEAYNIVNANNQYVKPTSGDPIRALIQDHIVSAALLTKKDTFLSYEEFNQLLYSSGVSM 598
Query: 67 -----------QALCILNTE--IRTLPPTIWKPM---------PLWTGKQVLSTVII--- 101
Q + + N+E + PP IWKP+ L + V+S ++
Sbjct: 599 AGLGSFYGKHGQKVFMSNSESEMFLFPPAIWKPLXLSLFXCXNKLLSKXTVISALLYYIT 658
Query: 102 ----NLTPKDKVIIRHGELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKK 157
+ T + I + I K++ + + I +L+ GI+DK
Sbjct: 659 RGSPSFTVEKNAKIPSNFFKTRIRKGKRYTQDTSKKKEKPDEDKLLIYKNDLVRGIVDKA 718
Query: 158 QFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRT 217
QFG G++H V + +G+ A +LLS L++LFT +LQ GFT GV D+++ + +D +R
Sbjct: 719 QFGDX--GMIHRVQELYGSNVAGNLLSALSRLFTTFLQMHGFTCGVDDLMLTEGKDVERM 776
Query: 218 KIINKARRLGTEAACNALGLPLDTDPEIISSQL--QEAYASIPQFRAQIDRQYKSLLDKV 275
+N +G + + + + ++ QL ++ S + DR+ + L+
Sbjct: 777 NQLNSCEIIGNSVHREFIRVKNSDNIDSVTLQLNIEKKIRSNGEATLTSDRKMTNKLNST 836
Query: 276 TNN-INQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVS 334
T++ I + L EG+++P N + M SGAKGS VN QIS LGQ ELEGKR MVS
Sbjct: 837 TSSGILKELLSEGILQPSGKNCISLMTTSGAKGSMVNFQQISSHLGQQELEGKRVPRMVS 896
Query: 335 GRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRC 394
G+TLP F P++ SPRAGGF+ RF+T + PQE++FHCMAG EGL+DTAVKTSRSGYLQRC
Sbjct: 897 GKTLPCFPPWDCSPRAGGFIIDRFLTALHPQEYYFHCMAGCEGLVDTAVKTSRSGYLQRC 956
Query: 395 LVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYK 454
L+K+LE L V YD TVRD+D S+IQ YGEDG+DV ++
Sbjct: 957 LMKNLECLKVCYDHTVRDADGSIIQFHYGEDGVDV-----------------------HQ 993
Query: 455 VILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKK 514
L L+ H L + L L + + + QLD +
Sbjct: 994 TCLFFLENHKLHIQLNKELVYSNYCR---------------------QLDRSS------- 1025
Query: 515 FKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDAS--HVDKFYDMIFYKNLLSLA 572
P I+ PDA L K++K R S H D F +I +K + L
Sbjct: 1026 ------PYINKL-PDA--------LEGKAEKFSKQRNLGSMEHAD-FVRLIEHKYVSCLT 1069
Query: 573 NPGENVGVLAAQSIGEPSTQMT---LNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
PGE VGVLA+QS+GEP+TQMT L++FH NVTLGIP L+EILM A + IKTP
Sbjct: 1070 QPGEPVGVLASQSVGEPATQMTXDFLHSFHXWS----NVTLGIPCLQEILMAAARDIKTP 1125
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLE--KVKIKEWLEISPEPHMNYQMKFCF 687
M P + K K A LA + +IT+AD+++ KV + + + Y++
Sbjct: 1126 FMTCPLRHE--KSMKDAICLADXLKKITVADIIKSMKVSVVPVTVLGGQICSIYKLVMKL 1183
Query: 688 IPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAA-----QGLKNM----------- 731
+ Y + T + + F++ELE AI A G+K +
Sbjct: 1184 YKSKQYPEYTDITLEDWEETLRVNFVRELEDAIENHMALLSKISGIKKIKDRPQSNYSNS 1243
Query: 732 ------NIEQSRDQMEDDVEDDEG------EGAEGAGAALGRVDVSSDEERDEEDAVQSH 779
N +S + + + EDD+G EG E G+ + + +E D ED +
Sbjct: 1244 SEDAHDNGSESEKKGQSNDEDDDGVVVEDTEGNEDLGSDAQKRKLQGTDEVDYEDGPEEE 1303
Query: 780 K-------KVNQEEDNDFEEPEDEERMSEREEDDN-----------TSNIGERFKIEFR- 820
E+ +D + E++ +RE+ + G F+I FR
Sbjct: 1304 THDGELSGNXGDEDGSDVDVNENDNNKLKREKKKSEPTKRYDWAIFVEAKGMHFEIHFRF 1363
Query: 821 -DSTNVFVKDVVNQHNIVHKYSYDKKNHMW-CKLLFLPS----------------NLFEE 862
++ + +V + K+ + CK + + FE
Sbjct: 1364 TGEPHILLTQIVQR--TAKKFCLQNFGKVGECKAITCKESGVIYYGKDDRKGDEISAFE- 1420
Query: 863 KESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 922
KE L+T G++ + LD+ +Y N++ M + YG+EAA IIREV+NVF
Sbjct: 1421 KEEIPALQTSGVHFKTFWELEDDLDVRYIYSNNVLAMLNAYGVEAARETIIREVQNVFX- 1479
Query: 923 YGIEVDPRHLSLVADYMTHSGTYVAMNRNG-IRLNPSFIQKMTFEMPLEKIRQASMQGRE 981
I V+ RHL L AD+MTHSG Y MNR G I + S KM FE + I +A+ G+
Sbjct: 1480 --ISVNIRHLKLNADFMTHSGGYCLMNRTGSIADSTSLFIKMCFETAAKFIVEAAYHGQV 1537
Query: 982 DSLRAPSARVMLGQECRQGTGLFQL 1006
D+L PSAR+ +G + GTG L
Sbjct: 1538 DNLETPSARICIGLPVKMGTGCHDL 1562
>gi|74140932|dbj|BAE22059.1| unnamed protein product [Mus musculus]
Length = 742
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 285/744 (38%), Positives = 410/744 (55%), Gaps = 112/744 (15%)
Query: 372 MAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTK 431
MAGREGL+DTAVKTSRSGYLQRC++KHLEGL + YD+TVRDSD S++Q LYGEDGLD+ K
Sbjct: 1 MAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVIQYDLTVRDSDGSVVQFLYGEDGLDIPK 60
Query: 432 RQYLTDKQFSFLEDNIKWICSYKVILNLLKK-----------------HPLSLALLLLLT 474
Q+L KQF FL N + I K + +L + H S ALL
Sbjct: 61 TQFLQPKQFPFLAGNYEVIMKSKHLHEVLSRADPQKVLGHIKAIKKWHHKHSGALLRKGA 120
Query: 475 FKSSGKP--------NFIFSPH--RTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLIS 524
F S + N S R+ T +L+ WY LD+++R KY+K+ CP P +S
Sbjct: 121 FLSFSQKIQAAVKALNLKGSIQNGRSPETQQMLQMWYDLDEESRWKYQKRAAPCPDPSLS 180
Query: 525 TFQPDAHFGSISENLADSVVKYTK---GRTDASH------VDKFYDMIFYKNLLSLANPG 575
++PD +F S+SE + +++ + + S+ +D+ ++ K SL +PG
Sbjct: 181 VWRPDIYFASVSETFEKKIDDFSQEWAAQAERSYKKSELSLDRLRTLLQLKWQRSLCDPG 240
Query: 576 ENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPF 635
E VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVTLGIPRLREILM+A+ IKTP M +P
Sbjct: 241 EAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPV 300
Query: 636 LPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPH--MNYQMKFCFIPAHMY 693
D K KK L K +TR+ + +VL+KV I+E + + + Y+++F F+P Y
Sbjct: 301 F-DTKKALKKVKSLKKRLTRVCLGEVLQKVDIQESFCMGEKRNKFQVYELRFQFLPHAYY 359
Query: 694 RDKTSVKPSKIIDHFERKFLKELEVAIAKR--AAQGLKNMNIEQSRDQMEDDVEDDEGEG 751
+ + ++P I+ E +F K L AI K+ A +N+N SR + D+ D E G
Sbjct: 360 QQEKCLRPEDILHFMETRFFKLLMEAIKKKKNKASAFRNVN---SRRATQKDLNDTEDSG 416
Query: 752 -----AEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEED------------------- 787
E G + V ++ E + DA + +K QEE+
Sbjct: 417 RSQREEERDEEEEGNI-VDAEAEEGDADASDTKRKEKQEEEVDYESEEEGEEEEEEEVQE 475
Query: 788 ---------NDFEEPEDEERMSEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVH 838
+ EP++EE + EE+ + + + ++ ++ V ++ +
Sbjct: 476 EGNIKGDGVHQGHEPDEEEHLGLEEEESSQKPPRRHSRPQGAEAIKRRIQAVRESYSFIE 535
Query: 839 KYSYDKKNHMWC---------KLLFLPSNLF-------------------------EEKE 864
Y YD + +WC K+ F S+L + E
Sbjct: 536 DYQYDTEESLWCQVTVKLPLMKINFDMSSLVVSLAHKAIVYTTKGITRCLLNETTNSKNE 595
Query: 865 SKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 924
+ +L T+GIN+ + +Y +LDL +LY NDIH MA+TYGIEAA RVI +E+K+VFAVYG
Sbjct: 596 KELVLNTEGINLPELFKYSEILDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYG 655
Query: 925 IEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSL 984
I VDPRHLSLVADYM G Y +NR GI+ + S +Q+MTFE + ++QA+M G D L
Sbjct: 656 IAVDPRHLSLVADYMCFEGVYKPLNRFGIQSSSSPLQQMTFETSFQFLKQATMMGSHDEL 715
Query: 985 RAPSARVMLGQECRQGTGLFQLRN 1008
++PSA +++G+ + GTGLF+L+
Sbjct: 716 KSPSACLVVGKVVKGGTGLFELKQ 739
>gi|167382961|ref|XP_001736348.1| DNA-directed RNA polymerase I subunit RPA1 [Entamoeba dispar SAW760]
gi|165901328|gb|EDR27412.1| DNA-directed RNA polymerase I subunit RPA1, putative [Entamoeba
dispar SAW760]
Length = 1568
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 269/678 (39%), Positives = 392/678 (57%), Gaps = 74/678 (10%)
Query: 17 SFLMNVS---SQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCILN 73
S +MN++ QY+VPK+G PL GLIQDHVIS L+ RDTF + EY ++Y AL +
Sbjct: 586 SEVMNIALSDEQYVVPKNGQPLRGLIQDHVISSFMLTKRDTFFNKEEYCQIIYTALYGIY 645
Query: 74 TE--IRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL--------LSGILDK 123
+ IR P I KP+P WTGKQV++ ++++++ I G+ G K
Sbjct: 646 EQYSIRIPKPAILKPIPKWTGKQVITGILMHISTNHCTINFEGKCKISTNEINRGGYQTK 705
Query: 124 KQFGST-QYGLVHAVW----DTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEH 178
K+ Q W D+ I+ ++L+G LDK Q G+T L+HA+++ + +
Sbjct: 706 KEIEMMKQKDEFTEKWNGANDSLCIIKESQMLTGTLDKNQIGATNQSLIHAIYELYNGKV 765
Query: 179 AISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL- 237
A L+ L++L T YLQR+G T + D +++ E D KRT+++NK L A L
Sbjct: 766 AGMCLTLLSRLLTTYLQRIGHTCSLDDCMLKPEFDNKRTEMLNKTNELARIATAKHFKLE 825
Query: 238 ---PLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPA 294
D D + +++ + PQ ++D K+ +++ T+N+ + C+P G + FP
Sbjct: 826 GHSKYDIDLALANARRR------PQLSKELDDSVKNEVNECTSNVIKECIPYGQLRAFPW 879
Query: 295 NNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFV 354
N+L M +GAKGS VN QI+CLLGQ ELEG+R +M +G+TLPSF Y+ S RAGGF+
Sbjct: 880 NSLALMTTTGAKGSKVNHSQITCLLGQQELEGRRVPVMATGKTLPSFPRYDTSARAGGFI 939
Query: 355 DGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSD 414
RF+TG+ PQEFFFHCMAGREGLIDTAVKT+ SGYLQRC++K LE L V YD +VR+SD
Sbjct: 940 ASRFLTGVPPQEFFFHCMAGREGLIDTAVKTASSGYLQRCVIKMLESLHVEYDYSVRESD 999
Query: 415 LSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLT 474
S+I+ +YG+DG+DV K +L + F W +Y ++
Sbjct: 1000 GSIIEFMYGDDGIDVMKSGFLNNIDF--------WANNYDALV----------------- 1034
Query: 475 FKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGS 534
S + TK + ++ + K +KK + + +P+ S + P + +
Sbjct: 1035 -----------SKYETKTILSKFKKGFSRACKLQKKCLRHPEQY-EPVQSIYSPSNNLAA 1082
Query: 535 ISENLADSVVKYTK----GRTDASHVD--KFYDMIFYKNLLSLANPGENVGVLAAQSIGE 588
+SE + Y K G + +D F M+ K SL NPGE VGVLA QSIGE
Sbjct: 1083 VSEKYYKLINDYIKEDKRGEFKSGKLDPETFKVMMMLKYNKSLINPGEPVGVLAGQSIGE 1142
Query: 589 PSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANR 648
PSTQMTLNTFH AGRGD+NVTLG+PR++E++M A K I TPSM I +L + P +K +
Sbjct: 1143 PSTQMTLNTFHLAGRGDVNVTLGMPRIKELVMFAKKEIATPSM-ILYLKE-PN-QKNTEK 1199
Query: 649 LAKSMTRITMADVLEKVK 666
LAK +T++T+A+++E +K
Sbjct: 1200 LAKLLTKVTLANIIEGIK 1217
Score = 132 bits (331), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 103/152 (67%)
Query: 855 LPSNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIR 914
+P + +E + + + T+G+N + Q+ +L+D++ + ND++ + + YG+EAA V+I
Sbjct: 1410 IPLSKKKEGRTIYYVMTEGVNFRAVLQFGNLVDVDSVETNDVYAVLNMYGVEAARTVLIH 1469
Query: 915 EVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQ 974
E+ +VF YGI+VDPRHL+LVADYMT+ G Y ++NR+G+ NPS K+TFE L + +
Sbjct: 1470 EIDSVFKAYGIDVDPRHLNLVADYMTYEGEYKSLNRSGMDHNPSPFTKITFETSLGFLAK 1529
Query: 975 ASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+ G++D+L++PS V++G+ GTG F +
Sbjct: 1530 TCVSGQKDNLKSPSGSVVMGKNMVFGTGAFDI 1561
>gi|407044441|gb|EKE42593.1| DNA-directed RNA polymerase I largest subunit, putative, partial
[Entamoeba nuttalli P19]
Length = 748
Score = 447 bits (1151), Expect = e-122, Method: Compositional matrix adjust.
Identities = 269/685 (39%), Positives = 397/685 (57%), Gaps = 88/685 (12%)
Query: 17 SFLMNVS---SQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCILN 73
S +MN++ QY+VPK+G PL GLIQDHVIS L+ RDTF T+ EY +VY AL +
Sbjct: 5 SEIMNIALSDEQYVVPKNGQPLRGLIQDHVISSFMLTKRDTFFTKEEYCQIVYTALYGIY 64
Query: 74 TE--IRTLPPTIWKPMPLWTGKQVLSTVIINLTP-------KDKVIIRHGELLSG----- 119
+ IR P I KP+P WTGKQV++ ++++++ + K + E+ G
Sbjct: 65 EQYSIRIPMPAILKPIPKWTGKQVVTAILMHISTNHCTINFEGKCKVSTNEINRGGYQTK 124
Query: 120 -----ILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTH 174
+ K +F G D+ I+ ++L+G LDK Q G++ L+HA+++ +
Sbjct: 125 KERKLMKQKDEFTEKWSG----ANDSLCIIKDSQMLTGTLDKNQIGASNQSLIHAIYELY 180
Query: 175 GAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNA 234
+ + L+ L++L T YLQR+G T + D +++ E D KRT+++NK L A
Sbjct: 181 NGKVSGMCLTLLSRLLTTYLQRIGHTCSLDDCMLKPEFDNKRTEMLNKTNELARTAIAKH 240
Query: 235 LGL----PLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIE 290
L D D + +++ + PQ ++D K+ +++ T+N+ + C+P G +
Sbjct: 241 FKLEGHSKYDIDLALANARRR------PQLSKELDDAVKTEVNECTSNVIKECIPYGQLR 294
Query: 291 PFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRA 350
FP N+L M +GAKGS VN QI+CLLGQ ELEG+R +M +G+TLPSF Y+ S RA
Sbjct: 295 AFPWNSLALMTTTGAKGSKVNHSQITCLLGQQELEGRRVPVMATGKTLPSFPRYDTSARA 354
Query: 351 GGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTV 410
GGF+ RF+TG+ PQEFFFHCMAGREGLIDTAVKT+ SGYLQRC++K LE L V YD +V
Sbjct: 355 GGFIASRFLTGVPPQEFFFHCMAGREGLIDTAVKTASSGYLQRCVIKMLESLHVEYDYSV 414
Query: 411 RDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALL 470
R+SD S+I+ +YG+DG+DV K +L + F W +Y ++
Sbjct: 415 RESDGSIIEFMYGDDGIDVMKSGFLNNIDF--------WANNYDALV------------- 453
Query: 471 LLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKK---YRKKFKACPQPLISTFQ 527
S + TK + ++ + K +KK + +K+ +P+ S +
Sbjct: 454 ---------------SKYETKAILSKFKKGFSRACKLQKKCLRHPEKY----EPVQSIYS 494
Query: 528 PDAHFGSISENLADSVVKYTK----GRTDASHVD--KFYDMIFYKNLLSLANPGENVGVL 581
P + ++SE + Y K G + +D F M+ K SL NPGE VGVL
Sbjct: 495 PSNNLAAVSEKYYKLINDYIKEDKRGEFKSGKLDPETFKVMMMLKYNKSLINPGEPVGVL 554
Query: 582 AAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPK 641
A QSIGEPSTQMTLNTFH AGRGD+NVTLG+PR++E++M A K I TPSM I +L + P
Sbjct: 555 AGQSIGEPSTQMTLNTFHLAGRGDVNVTLGMPRIKELVMFAKKEIATPSM-ILYLKE-PN 612
Query: 642 LEKKANRLAKSMTRITMADVLEKVK 666
+K +LAK +T++T+A+++E +K
Sbjct: 613 -QKNTEKLAKLLTKVTLANIIEGIK 636
>gi|449708432|gb|EMD47895.1| DNA-directed RNA polymerase I subunit RPA1, putative [Entamoeba
histolytica KU27]
Length = 1570
Score = 447 bits (1149), Expect = e-122, Method: Compositional matrix adjust.
Identities = 269/685 (39%), Positives = 397/685 (57%), Gaps = 88/685 (12%)
Query: 17 SFLMNVS---SQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCILN 73
S +MN++ QY+VPK+G PL GLIQDHVIS L+ RDTF T+ EY +VY AL +
Sbjct: 586 SEVMNIALSDEQYVVPKNGQPLRGLIQDHVISSFMLTKRDTFFTKEEYCQIVYTALYGIY 645
Query: 74 TE--IRTLPPTIWKPMPLWTGKQVLSTVIINLTP-------KDKVIIRHGELLSG----- 119
+ IR P I KP+P WTGKQV++ ++++++ + K + E+ G
Sbjct: 646 EQYSIRIPMPAILKPIPKWTGKQVVTAILMHISTNHCTINFEGKCKVSTNEINRGGYQTK 705
Query: 120 -----ILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTH 174
+ K +F G D+ I+ ++L+G LDK Q G++ L+HA+++ +
Sbjct: 706 KERKLMKQKDEFTEKWSG----ANDSLCIIKDSQMLTGTLDKNQIGASNQSLIHAIYELY 761
Query: 175 GAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNA 234
+ + L+ L++L T YLQR+G T + D +++ E D KRT+++NK L A
Sbjct: 762 NGKVSGMCLTLLSRLLTTYLQRIGHTCSLDDCMLKPEFDNKRTEMLNKTNELARTAIAKH 821
Query: 235 LGL----PLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIE 290
L D D + +++ + PQ ++D K+ +++ T+N+ + C+P G +
Sbjct: 822 FKLEGHSKYDIDLALANARRR------PQLSKELDDAVKTEVNECTSNVIKECIPYGQLR 875
Query: 291 PFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRA 350
FP N+L M +GAKGS VN QI+CLLGQ ELEG+R +M +G+TLPSF Y+ S RA
Sbjct: 876 AFPWNSLALMTTTGAKGSKVNHSQITCLLGQQELEGRRVPVMATGKTLPSFPRYDTSARA 935
Query: 351 GGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTV 410
GGF+ RF+TG+ PQEFFFHCMAGREGLIDTAVKT+ SGYLQRC++K LE L V YD +V
Sbjct: 936 GGFIASRFLTGVPPQEFFFHCMAGREGLIDTAVKTASSGYLQRCVIKMLESLHVEYDYSV 995
Query: 411 RDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALL 470
R+SD S+I+ +YG+DG+DV K +L + F W +Y ++
Sbjct: 996 RESDGSIIEFMYGDDGIDVMKSGFLNNIDF--------WANNYDALV------------- 1034
Query: 471 LLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKK---YRKKFKACPQPLISTFQ 527
S + TK + ++ + K +KK + +K+ +P+ S +
Sbjct: 1035 ---------------SKYETKAILSKFKKGFSRACKLQKKCLRHPEKY----EPVQSIYS 1075
Query: 528 PDAHFGSISENLADSVVKYTK----GRTDASHVD--KFYDMIFYKNLLSLANPGENVGVL 581
P + ++SE + Y K G + +D F M+ K SL NPGE VGVL
Sbjct: 1076 PSNNLAAVSEKYYKLINDYIKEDKRGEFKSGKLDPETFKVMMMLKYNKSLINPGEPVGVL 1135
Query: 582 AAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPK 641
A QSIGEPSTQMTLNTFH AGRGD+NVTLG+PR++E++M A K I TPSM I +L + P
Sbjct: 1136 AGQSIGEPSTQMTLNTFHLAGRGDVNVTLGMPRIKELVMFAKKEIATPSM-ILYLKE-PN 1193
Query: 642 LEKKANRLAKSMTRITMADVLEKVK 666
+K +LAK +T++T+A+++E +K
Sbjct: 1194 -QKNTEKLAKLLTKVTLANIIEGIK 1217
Score = 129 bits (325), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 101/152 (66%)
Query: 855 LPSNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIR 914
+P + +E + + + T+G+N Q+ +L+D++ + ND++ + + YG+EAA V+I
Sbjct: 1412 IPLSKKKEGRTIYYVMTEGVNFRAALQFGNLVDVDTVETNDVYAVLNMYGVEAARTVLIH 1471
Query: 915 EVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQ 974
E+ +VF YGI+VDPRHL+LVADYM + G Y ++NR+G+ NPS K+TFE L + +
Sbjct: 1472 EIDSVFKAYGIDVDPRHLNLVADYMMYEGEYKSLNRSGMDHNPSPFTKITFETSLGFLAK 1531
Query: 975 ASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+ G++D+LR+PS V++G+ GTG F +
Sbjct: 1532 TCVSGQKDNLRSPSGSVVMGKNMVFGTGAFDI 1563
>gi|183232815|ref|XP_649386.2| DNA-directed RNA polymerase I largest subunit [Entamoeba histolytica
HM-1:IMSS]
gi|169801864|gb|EAL43998.2| DNA-directed RNA polymerase I largest subunit, putative [Entamoeba
histolytica HM-1:IMSS]
Length = 1570
Score = 447 bits (1149), Expect = e-122, Method: Compositional matrix adjust.
Identities = 269/685 (39%), Positives = 397/685 (57%), Gaps = 88/685 (12%)
Query: 17 SFLMNVS---SQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCILN 73
S +MN++ QY+VPK+G PL GLIQDHVIS L+ RDTF T+ EY +VY AL +
Sbjct: 586 SEVMNIALSDEQYVVPKNGQPLRGLIQDHVISSFMLTKRDTFFTKEEYCQIVYTALYGIY 645
Query: 74 TE--IRTLPPTIWKPMPLWTGKQVLSTVIINLTP-------KDKVIIRHGELLSG----- 119
+ IR P I KP+P WTGKQV++ ++++++ + K + E+ G
Sbjct: 646 EQYSIRIPMPAILKPIPKWTGKQVVTAILMHISTNHCTINFEGKCKVSTNEINRGGYQTK 705
Query: 120 -----ILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTH 174
+ K +F G D+ I+ ++L+G LDK Q G++ L+HA+++ +
Sbjct: 706 KERKLMKQKDEFTEKWSG----ANDSLCIIKDSQMLTGTLDKNQIGASNQSLIHAIYELY 761
Query: 175 GAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNA 234
+ + L+ L++L T YLQR+G T + D +++ E D KRT+++NK L A
Sbjct: 762 NGKVSGMCLTLLSRLLTTYLQRIGHTCSLDDCMLKPEFDNKRTEMLNKTNELARTAIAKH 821
Query: 235 LGL----PLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIE 290
L D D + +++ + PQ ++D K+ +++ T+N+ + C+P G +
Sbjct: 822 FKLEGHSKYDIDLALANARRR------PQLSKELDDAVKTEVNECTSNVIKECIPYGQLR 875
Query: 291 PFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRA 350
FP N+L M +GAKGS VN QI+CLLGQ ELEG+R +M +G+TLPSF Y+ S RA
Sbjct: 876 AFPWNSLALMTTTGAKGSKVNHSQITCLLGQQELEGRRVPVMATGKTLPSFPRYDTSARA 935
Query: 351 GGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTV 410
GGF+ RF+TG+ PQEFFFHCMAGREGLIDTAVKT+ SGYLQRC++K LE L V YD +V
Sbjct: 936 GGFIASRFLTGVPPQEFFFHCMAGREGLIDTAVKTASSGYLQRCVIKMLESLHVEYDYSV 995
Query: 411 RDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALL 470
R+SD S+I+ +YG+DG+DV K +L + F W +Y ++
Sbjct: 996 RESDGSIIEFMYGDDGIDVMKSGFLNNIDF--------WANNYDALV------------- 1034
Query: 471 LLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKK---YRKKFKACPQPLISTFQ 527
S + TK + ++ + K +KK + +K+ +P+ S +
Sbjct: 1035 ---------------SKYETKAILSKFKKGFSRACKLQKKCLRHPEKY----EPVQSIYS 1075
Query: 528 PDAHFGSISENLADSVVKYTK----GRTDASHVD--KFYDMIFYKNLLSLANPGENVGVL 581
P + ++SE + Y K G + +D F M+ K SL NPGE VGVL
Sbjct: 1076 PSNNLAAVSEKYYKLINDYIKEDKRGEFKSGKLDPETFKVMMMLKYNKSLINPGEPVGVL 1135
Query: 582 AAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPK 641
A QSIGEPSTQMTLNTFH AGRGD+NVTLG+PR++E++M A K I TPSM I +L + P
Sbjct: 1136 AGQSIGEPSTQMTLNTFHLAGRGDVNVTLGMPRIKELVMFAKKEIATPSM-ILYLKE-PN 1193
Query: 642 LEKKANRLAKSMTRITMADVLEKVK 666
+K +LAK +T++T+A+++E +K
Sbjct: 1194 -QKNTEKLAKLLTKVTLANIIEGIK 1217
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 102/152 (67%)
Query: 855 LPSNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIR 914
+P + +E + + + T+G+N Q+ +L+D++ + ND++ + + YG+EAA V+I
Sbjct: 1412 IPLSKKKEGRTIYYVMTEGVNFRAALQFGNLVDVDTVETNDVYAVLNMYGVEAARTVLIH 1471
Query: 915 EVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQ 974
E+ +VF YGI+VDPRHL+LVADYMT+ G Y ++NR+G+ NPS K+TFE L + +
Sbjct: 1472 EIDSVFKAYGIDVDPRHLNLVADYMTYEGEYKSLNRSGMDHNPSPFTKITFETSLGFLAK 1531
Query: 975 ASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+ G++D+LR+PS V++G+ GTG F +
Sbjct: 1532 TCVSGQKDNLRSPSGSVVMGKNMVFGTGAFDI 1563
>gi|302843962|ref|XP_002953522.1| hypothetical protein VOLCADRAFT_105949 [Volvox carteri f.
nagariensis]
gi|300261281|gb|EFJ45495.1| hypothetical protein VOLCADRAFT_105949 [Volvox carteri f.
nagariensis]
Length = 1891
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 293/808 (36%), Positives = 420/808 (51%), Gaps = 128/808 (15%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
++E +++ QY+VP DG P+ GLIQDHV SG ++ R T+ T EY LVY A
Sbjct: 756 RSEGYVIVHADQQYIVPTDGKPIRGLIQDHVGSGTLITKRGTWFTADEYRQLVYVACTPW 815
Query: 73 N-------------------------------TEIRTLPPTIWKPMPLWTGKQVLSTVII 101
N +I+ PP + KP LW+GKQV+STV+
Sbjct: 816 NAKNAAAAAVAAAAEATGIARAKVTVTSLGRAADIKLEPPCMLKPRRLWSGKQVISTVVS 875
Query: 102 NLTPKDKVIIRHGELLSGILDKKQFGSTQYGLVHAVWDTHVTIRH------GELLSGILD 155
T L F + G V A + + ++ H G ++ G++D
Sbjct: 876 YFTRG--------------LPPLTFSAG--GKVPASYWGNTSMEHELEFFRGAMVRGVVD 919
Query: 156 KKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRK 215
K FG +YGLVHAV + +G A +LS ++LFT YLQ GF+ G+ D+L+ + + K
Sbjct: 920 KNSFG--KYGLVHAVQELYGNVTAGEILSAFSRLFTYYLQWHGFSCGMDDLLLVPKSEAK 977
Query: 216 RTKIINKARRLGTEA----------ACNALGLP--LDTDP-----EIISSQLQEAYASIP 258
R ++ A +A A +++ LP + DP E++ +++ A A
Sbjct: 978 REALLASAEARAVQASSGLLRDKDKAQDSVELPEKILADPTSHARELLKYEMKVAAALGE 1037
Query: 259 QFRAQIDR------QYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
++RA D + + +++ + +VCLP+G ++ FP N L M +GAKGS VN
Sbjct: 1038 RYRANRDTGKAHDMKGSGAMHALSSEVIKVCLPDGQVKAFPKNCLSLMTITGAKGSLVNF 1097
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
QISCLLGQ ELEG+RP M SG+TLP F PY+ R+ GF+ RF+TG++PQE++FHCM
Sbjct: 1098 SQISCLLGQQELEGRRPPRMASGKTLPCFRPYDGGGRSNGFIGDRFLTGLRPQEYYFHCM 1157
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDS-DLSLIQVLYGEDGLDVTK 431
AGREGL+DTAVKTSRSGYLQRCL+K+LE L VHYD TVRD+ D S++Q+ YGEDGLDV
Sbjct: 1158 AGREGLVDTAVKTSRSGYLQRCLIKNLESLRVHYDGTVRDNCDASIVQLAYGEDGLDVMN 1217
Query: 432 RQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPHRTK 491
Y+ QF FL N + + + + + ++ + + LT + + + R K
Sbjct: 1218 VSYML--QFGFLARNAE-----RFVQQVDQDTAMTASKVACLTEREAKVAAAL--EKRGK 1268
Query: 492 FTMDLLEQWYQLDDKARKKYRKKFKACPQPL-ISTFQPDAHFGSISENLADSVVKY---- 546
+Q + +A + RK+ A + IS P G+ SE AD++ +
Sbjct: 1269 LLEKASQQEKEGQAEAAAESRKRAAALLDGMPISALHPPTVVGASSEAFADALQAFMRAN 1328
Query: 547 -------------TKGRTDASHVDK-------------FYDMIFYKNLLSLANPGENVGV 580
TK + D H K F ++ K + SLA GE VGV
Sbjct: 1329 AGSDLLAADVKSATKSKRDKQHQAKAPNILPGRVDGATFSQLMMLKFMRSLAAAGEAVGV 1388
Query: 581 LAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMP 640
LAAQSIGEPSTQMTLNTFH AGRG+ NVTLGIPRLREILM A K IKTP M +P M
Sbjct: 1389 LAAQSIGEPSTQMTLNTFHMAGRGEANVTLGIPRLREILMTAAKRIKTPVMTLPVRRGMA 1448
Query: 641 KLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMN------YQMKFCFIPAHMYR 694
E A LA M R+ +A+ L + ++E ++ P + Y++ F Y
Sbjct: 1449 AAE--AQVLANRMRRLRLAECLSGITVEER-PVAHVPALGGGYGRVYRVTLHFFSPSQYP 1505
Query: 695 DKTSVKPSKIIDHFERKFLKELEVAIAK 722
+T++ +++ F F K L+ + K
Sbjct: 1506 PETALSFVELVRVFRGLFSKRLQFEVEK 1533
Score = 127 bits (318), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 59/138 (42%), Positives = 90/138 (65%)
Query: 869 LKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 928
++TDG+N + + D+N + ND++ M +T+G+EAA I+RE ++VF+ YGI VD
Sbjct: 1748 VQTDGVNFEGAWIHSDIADVNAVTTNDVYAMLTTFGVEAARATIMREAQSVFSAYGIGVD 1807
Query: 929 PRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPS 988
PRHLSL+AD+MTH G Y A NR GI + S KM+FE + A+++G D L++P+
Sbjct: 1808 PRHLSLIADFMTHQGGYRACNRVGIESSVSPFLKMSFETAAHFLTDATLKGAMDDLKSPA 1867
Query: 989 ARVMLGQECRQGTGLFQL 1006
AR+ +G+ GTG +L
Sbjct: 1868 ARLCVGRVVELGTGCVEL 1885
>gi|118363248|ref|XP_001014750.1| RNA polymerase Rpb1, domain 2 family protein [Tetrahymena
thermophila]
gi|89296616|gb|EAR94604.1| RNA polymerase Rpb1, domain 2 family protein [Tetrahymena thermophila
SB210]
Length = 1727
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 276/734 (37%), Positives = 388/734 (52%), Gaps = 121/734 (16%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
SH +AE + Q++ +G+PL LIQD ++S L+ ++ FL + E+ LVY A
Sbjct: 674 SHLARAEGYHISLNDRQFINTTNGNPLRELIQDTIVSAVFLTHKEKFLQKEEFQELVYAA 733
Query: 69 LCIL-----NT-----EIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLS 118
+ N+ +I +PP I KP PLWTGKQ+++ +I K++++ +
Sbjct: 734 TWNMFEKNNNSTTKPYKIFLVPPAIQKPKPLWTGKQLITNII-------KIVVQQNQ--- 783
Query: 119 GILDKKQFGSTQYGLVHAVW-----------DTHVTIRHGELLSGILDKKQFGS-TQYGL 166
KK + Y + A DT V IR ELL G+LDK QFG+ YGL
Sbjct: 784 ----KKDYEQGVYMEMKAKLTADELTGIYKDDTVVIIRDNELLQGVLDKNQFGAGATYGL 839
Query: 167 VHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRL 226
+HA ++ +GA L + LAKL + +LQ GFT G+ D+LV +E D +R + I A
Sbjct: 840 MHAFYELYGASLTGKLFTALAKLLSAHLQMHGFTCGMDDLLVSKESDEQRLQEIKAAHVD 899
Query: 227 GTEAACNALGLP----------------------------LDTDPEI--------ISSQL 250
G A +G+ L PE+ I Q+
Sbjct: 900 GVLACAEFVGMKDYEVPQGWNLYNRPNFVLNSKGRFSSNVLKRKPEVDYLSNENPILEQI 959
Query: 251 QEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTV 310
Q PQ D YKS + + + I L GLI+ FP NN M SGAKGS V
Sbjct: 960 QRKLVRDPQLAEAQDNVYKSTMSQKGSKILNTALG-GLIKKFPFNNFTTMTNSGAKGSKV 1018
Query: 311 NTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFH 370
N Q+S LLGQ ELEG+R +M +GRTLP FLPY+ +PRAGGF+ RF++G++P EFFFH
Sbjct: 1019 NHTQVSALLGQQELEGRRVPVMATGRTLPCFLPYDPNPRAGGFISDRFLSGLRPAEFFFH 1078
Query: 371 CMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVT 430
CMAGREGLIDTAVKTSRSGYLQRCL+KHLE L V YD TVRD+D S++Q YGED +D
Sbjct: 1079 CMAGREGLIDTAVKTSRSGYLQRCLMKHLEALKVAYDYTVRDADGSVVQFYYGEDSIDPN 1138
Query: 431 KRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPHRT 490
K +YL ++F FL +N +F + P+
Sbjct: 1139 KVKYL--EKFRFLAEN-------------------------FTSFTQK------YDPYHL 1165
Query: 491 KFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKG- 549
K + D L + R++ + K +++ F P H GS+SE + +V +Y K
Sbjct: 1166 KDSHDFESVNRFLKKRKRQESSETEKKTCDTIMNNFLPGKHIGSVSERVYKNVKEYIKKE 1225
Query: 550 -------------RTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLN 596
+ D KF+ + K L SL +PG++VG LAAQ+IGEPSTQMTLN
Sbjct: 1226 QQSADPYSNIFNIKQDQLSPQKFHMLFNVKYLNSLIHPGDSVGCLAAQAIGEPSTQMTLN 1285
Query: 597 TFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFL-PDMPKLEKKANRLAKSMTR 655
TFH AG G +N+TLGIPRLREILM AT +KTP M + P++ + +++ A+ + +
Sbjct: 1286 TFHLAGHGGVNLTLGIPRLREILMTATDKLKTPVMLLNLSNPEVAQNKEQVQNHARKLQK 1345
Query: 656 ITMADVLEKVKIKE 669
I + +++ +++KE
Sbjct: 1346 INLLELVNNIEVKE 1359
Score = 102 bits (254), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 85/142 (59%), Gaps = 1/142 (0%)
Query: 865 SKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 924
+ + ++T+G+N I + H D N + NDI + YGIEAA I++E+ VF VYG
Sbjct: 1583 TSYQIQTEGVNFKQIWKMDHF-DSNTIDSNDIAALNKCYGIEAARNAIVKEIVTVFGVYG 1641
Query: 925 IEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSL 984
+ VD RHL L+ADY+T SG AMNR + + S KM+FE ++ + A+ D+L
Sbjct: 1642 VVVDYRHLYLIADYLTFSGEMKAMNRVWMDESISPFLKMSFETCVKFLTNAATNNEIDTL 1701
Query: 985 RAPSARVMLGQECRQGTGLFQL 1006
PS+ ++LG+ + GTG+F +
Sbjct: 1702 STPSSSIVLGRVPQVGTGVFDI 1723
>gi|429853059|gb|ELA28158.1| DNA-directed RNA polymerase i subunit rpa1 [Colletotrichum
gloeosporioides Nara gc5]
Length = 1704
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 285/732 (38%), Positives = 397/732 (54%), Gaps = 73/732 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL--- 69
+AEA + + QYL G PL GLIQDH+ L +DTF R Y L+Y AL
Sbjct: 656 RAEALQIADTDHQYLSGTAGKPLRGLIQDHLSVSVALCNKDTFFDRDSYQQLIYSALRPE 715
Query: 70 --CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
IL I +PP I KP+P WTGKQV++T++ N+ P + G ++G K Q
Sbjct: 716 SGHILGERIELIPPAIIKPIPRWTGKQVVTTILKNIKPPNG----EGLWMTG---KSQVK 768
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
Q+G + V + G+ LSGILDK Q G + GL+HA+ + +G A LLS +
Sbjct: 769 GEQWG--KGSEEGTVLFQDGQFLSGILDKAQLGPSSGGLIHAIHEIYGPAVAGKLLSGIG 826
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL----PLDTDP 243
+L T YL FT G+ D+ + + + R + + A+ +G E A + L P DP
Sbjct: 827 RLLTRYLNMRAFTCGMDDLRLTPQGEVSRKETLKAAKGIGLEVAARYVSLEDNKPGSDDP 886
Query: 244 EIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVES 303
E+++ +L+E + + +D KV++ + CLP GL++ FP N +Q M S
Sbjct: 887 ELLT-RLEEVMRDDSK-QEGLDMLMNQSSAKVSSMVTAACLPVGLVKQFPKNQMQSMTTS 944
Query: 304 GAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQ 363
GAKG VN ISC LGQ LEG+R +MVSG++LP F P+E RAGG++ RF+TGI+
Sbjct: 945 GAKGGQVNANLISCNLGQQVLEGRRVPLMVSGKSLPCFRPFETDVRAGGYIVQRFLTGIR 1004
Query: 364 PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYG 423
PQE++FH MAGREGLIDTAVKTSRSGYLQRC++K +EGLTV YD TVRD+D +L+Q LYG
Sbjct: 1005 PQEYYFHHMAGREGLIDTAVKTSRSGYLQRCIIKGMEGLTVSYDSTVRDADGTLVQCLYG 1064
Query: 424 EDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNF 483
EDGLD TK++YLTD F F+ NI + L F S K F
Sbjct: 1065 EDGLDPTKQKYLTD--FGFVLRNIGSETAQ-------------------LNFGSEFKDRF 1103
Query: 484 IFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSV 543
+ D+L+ K+ K+ K A P+IS P + SE + +
Sbjct: 1104 AGNKD------DVLKHM-----KSAIKHAKVDIAAKDPIISLVNPARVAFATSEQFYEKM 1152
Query: 544 VKYTKGRTDASHVDKFYD-----------------MIFYKNLLSLANPGENVGVLAAQSI 586
+Y K D DK D ++ K + SL GE VG++A QS+
Sbjct: 1153 SQYIKNNEDGLIRDKSKDVSGLINAPAVNRKSAELVLAAKYMRSLVEAGEGVGIVAGQSV 1212
Query: 587 GEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKA 646
GEPSTQMTLNTFH AG NVTLGIPRLREILM A+++I TPSM + ++ E +
Sbjct: 1213 GEPSTQMTLNTFHLAGHSAKNVTLGIPRLREILMTASRSISTPSMTLLLHEELSATEGEI 1272
Query: 647 NRLAKSMTRITMADVLEKVKIKEWLEISPEPHMN--YQMKFCFIPAHMYRDKTSVKPSKI 704
AKS++ + +ADVL+ + E + + Y ++ F P+ Y ++ S +
Sbjct: 1273 --FAKSISVLPLADVLDTASVNERIGKGQNSALAKLYDVRLNFFPSEEYTKTYAIDASDV 1330
Query: 705 IDHFERKFLKEL 716
+D E++FL L
Sbjct: 1331 MDTVEKRFLDHL 1342
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 83/136 (61%)
Query: 871 TDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 930
T G N+ + +Y ++ NK+ NDI + YG+EA I+ E+ VF +GI VD R
Sbjct: 1555 TSGANLRAMQKYGDFINPNKIATNDIAAVLDVYGVEACRTNIVSELAGVFGGHGISVDNR 1614
Query: 931 HLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSAR 990
HL+L+ADYMT +G + NRNG+R N S KM+FE L ++ A + G D LR PS+R
Sbjct: 1615 HLNLIADYMTRNGDFTPFNRNGLRGNISPFTKMSFETTLSFLKDAVLDGDWDDLRTPSSR 1674
Query: 991 VMLGQECRQGTGLFQL 1006
+++G+ R GTG F +
Sbjct: 1675 IVMGRLGRIGTGAFDV 1690
>gi|294911649|ref|XP_002778030.1| DNA-directed RNA polymerase I largest subunit, putative [Perkinsus
marinus ATCC 50983]
gi|239886151|gb|EER09825.1| DNA-directed RNA polymerase I largest subunit, putative [Perkinsus
marinus ATCC 50983]
Length = 1774
Score = 444 bits (1141), Expect = e-121, Method: Compositional matrix adjust.
Identities = 300/851 (35%), Positives = 441/851 (51%), Gaps = 123/851 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL--- 69
+AEA ++ + QYL P G PL GLIQDHV+SG L+ RD F+ + E NL+Y A+
Sbjct: 631 RAEAIYIASADHQYLGPTSGKPLRGLIQDHVVSGVFLTARDHFMRKTEVQNLIYTAMRAA 690
Query: 70 -----------------CILNT--------EIRTLPPTIWKPMPLWTGKQVLSTVIINLT 104
L T I PP I KP LWTGKQV++ + +L
Sbjct: 691 IEGDTSGIGSVKSRGQVTKLTTPAGVPKDFRIVMEPPVIVKPQTLWTGKQVITIFLKSLI 750
Query: 105 -----PKDKVIIRH----------GELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGEL 149
DK I+ G+L G+ D + + VTIR EL
Sbjct: 751 KFATHSTDKAIVNGFNHHAKAKTPGDLWGGVSDGNK------------EEQMVTIRDTEL 798
Query: 150 LSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVR 209
+ G+LDK FG+T GL H ++ G + A LL+ + ++ T+YLQ GFT +RD+L+
Sbjct: 799 IEGVLDKASFGATANGLTHLFYELCGPKAAGLLLTGMGRMLTLYLQYHGFTCAMRDLLIT 858
Query: 210 QERDRKRTKIINKARRLGTEAACNAL-GLPLDTDPE--------IISSQLQEAYASIPQF 260
E D R +++ KAR E + N + + PE + ++ + YA+ P+
Sbjct: 859 PEGDEARLQMLRKAR----EDSWNKIRDWVKENSPEEANVKTLHKLQKEIGKLYAADPKV 914
Query: 261 RAQIDRQYKSLLDKVTNN----INQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQIS 316
+ + + + + + + + P+G + PFP N MV +GAKGS VN I
Sbjct: 915 QHPMFEELEETMLSTNRDYWGKLIDILFPKGQVSPFPDNCFSAMVSTGAKGSKVNHSMID 974
Query: 317 CLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGRE 376
+LGQ ELEG R M + R LPSF Y++ PRAGG++ RF+TG +PQEFF+HCMAGRE
Sbjct: 975 AMLGQQELEGHRAPRMRNQRFLPSFAQYDIGPRAGGYITDRFLTGYRPQEFFYHCMAGRE 1034
Query: 377 GLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLT 436
GL+DTAVKT+RSGYLQRCLVK+LEG+T++YD TVRD+D S+++ LYGEDG+DVTK +L
Sbjct: 1035 GLVDTAVKTARSGYLQRCLVKNLEGITINYDYTVRDTDSSIVEFLYGEDGMDVTKVSHL- 1093
Query: 437 DKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDL 496
+QF L++N ++ + K +L L K + KP S RTK DL
Sbjct: 1094 -EQFDVLDENSAFMAKSAAVAKEEAKMESNLPALYR---KWAEKPQ---SGRRTK---DL 1143
Query: 497 LEQWYQLDDKARKKYRKKFKACPQ----------PLISTFQPDAHFGSISENLADSVVKY 546
+++ DK R + ++ + P+ S P G++SE +++ +Y
Sbjct: 1144 VKE-VNASDKLRDEEKEHIAFVVKDTHTNGGKAPPMNSMLPPWRFTGAMSEREENALTEY 1202
Query: 547 TKGRTDASH----VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAG 602
R + ++F D+I +K +LA+PGE VG LAAQ +GEPSTQMTLNTFH AG
Sbjct: 1203 LSHRPEELEKKMPTEEFRDVIMHKYARTLADPGEAVGTLAAQGMGEPSTQMTLNTFHLAG 1262
Query: 603 RGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVL 662
G +NVTLGIPRLREI+ A++ ++TP+ME P L + K A L MTR+++ DV+
Sbjct: 1263 HGGVNVTLGIPRLREIVQTASRHLETPAMEFPVLGGV----KVAEELKGKMTRVSLKDVV 1318
Query: 663 EKVKIKEWL---EISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHF----------- 708
+ E + + S E Y++ + M + I HF
Sbjct: 1319 VATHVLESVTAAQPSGETMRTYELVVELVDPVMIQKAYPSLSQTAIAHFLDHDFRDKLNS 1378
Query: 709 -ERKFLK--ELEVAIAKRAAQ---GLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRV 762
+KF+K E I R AQ G ++ E D+ + + D+G+ ++ L +
Sbjct: 1379 NLKKFIKISESTSTITSRKAQQEEGAADVFNEIPEDENNAE-QKDQGDESQNVTRTLAQR 1437
Query: 763 DVSSDEERDEE 773
++DEER+ E
Sbjct: 1438 ARATDEEREAE 1448
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 89/145 (61%), Gaps = 1/145 (0%)
Query: 863 KESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 922
+ K ++T+G+N++ I+ +D +++ NDI + YG+EAA I++EV VF
Sbjct: 1602 QSDKVTIETEGVNLD-IAWGLDGIDHDRIVTNDIGLILDRYGVEAARAAIVQEVLRVFGH 1660
Query: 923 YGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGRED 982
YGI VDPRHL L++DYMTH G + +R G+ + S +MTFE + + +A + D
Sbjct: 1661 YGIGVDPRHLMLISDYMTHHGGFRPFSRRGMEAHASPWLQMTFETSVNFLTKACNNAQYD 1720
Query: 983 SLRAPSARVMLGQECRQGTGLFQLR 1007
+L++P+ +++G++ GTG F LR
Sbjct: 1721 TLKSPAGSIIVGKQASVGTGCFDLR 1745
>gi|316997005|dbj|BAJ52630.1| RNA polymerase I largest subunit [Paramecium tetraurelia]
Length = 1029
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 276/693 (39%), Positives = 384/693 (55%), Gaps = 104/693 (15%)
Query: 25 QYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL----NTEIRTLP 80
QY+ +G PL L+QD ++S L+LRDTFLT+ +YM L+Y A+ L + +I L
Sbjct: 23 QYISQTNGKPLRELMQDMIVSSVFLTLRDTFLTKQQYMQLIYTAIWSLFEKNSQKIELLQ 82
Query: 81 PTIWKPMPLWTGKQVLSTVI---INLTPKDKVIIRHGELLSGILDKKQFGSTQYGLVHAV 137
P I KP LWTGKQ++S +I + L D I + E + K+ G A
Sbjct: 83 PAILKPKQLWTGKQLISNIIKIIVGLNGYDPDIGLNLESKCKLSSKELPGM-------AS 135
Query: 138 WDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQR 196
D V I+ ELL GI+DK Q GS YG++HA + +G + LL+ A+LF YLQ
Sbjct: 136 DDIQVLIKDNELLLGIVDKNQVGSGADYGMMHAFHELYGPKMTGQLLTGFARLFAAYLQY 195
Query: 197 VGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALG----LP-------------- 238
GFT G+ D++V + D KR +I + + G A G +P
Sbjct: 196 HGFTCGMDDLIVDELHDEKRRVLIEENLKKGVRQAAEYCGYNSQIPESINLFNRSNFVFE 255
Query: 239 ---------------LDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVC 283
L D +I + Q+ Q A +D++YK + KVT+ I
Sbjct: 256 NGQYNHPKYLQDVHYLQYDHQIYEALRQKILIEKHQEEA-LDQEYKKAMTKVTSEIVGST 314
Query: 284 LPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLP 343
L GL + FP N M +GAKGS VN Q+S LLGQ ELEG+R +M +GR+LPSFLP
Sbjct: 315 LG-GLQKLFPLNLFSMMTMTGAKGSNVNHSQVSALLGQQELEGRRVPLMPTGRSLPSFLP 373
Query: 344 YEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLT 403
Y+ +PRAGG+V RF+TG++PQ FFFHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEGL
Sbjct: 374 YDPNPRAGGYVADRFLTGLRPQGFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLI 433
Query: 404 VHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKH 463
V YD+TVRD+D SLIQ+ GEDG+D TK +YL ++FSFL N +H
Sbjct: 434 VQYDLTVRDNDGSLIQLFCGEDGIDTTKTKYL--EKFSFLAQN--------------NQH 477
Query: 464 PLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLI 523
++ + + ++Q ++ D A + L+
Sbjct: 478 ------------------------YKQLYRVQEMKQHFKTLDGASVELEN------DTLM 507
Query: 524 STFQPDAHFGSISENLADSVVKYTKGRTDASHVDK-----FYDMIFYKNLLSLANPGENV 578
+ F P + G++S + ++ +Y + + K F + + L +L +PG+ V
Sbjct: 508 NAFNPSQNLGAVSMKVQSTMNEYLQKCQNELQQKKISNKQFKSLANIRYLRALMHPGDAV 567
Query: 579 GVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPD 638
G +AAQSIGEPSTQMTLNTFH AG G+ NVTLGIPRLREILM ATK KTP+M + FL
Sbjct: 568 GCVAAQSIGEPSTQMTLNTFHLAGHGEKNVTLGIPRLREILMTATKKQKTPTMSLQFLN- 626
Query: 639 MPKLEK-KANRLAKSMTRITMADVLEKVKIKEW 670
+EK +A+R AK M+++ +++ +K++E+
Sbjct: 627 -ANIEKSQADRYAKRMSKLVFLELVNNIKVREY 658
>gi|412985554|emb|CCO19000.1| predicted protein [Bathycoccus prasinos]
Length = 1879
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 278/729 (38%), Positives = 405/729 (55%), Gaps = 53/729 (7%)
Query: 10 HFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL 69
H +AEA ++ Q+ P DG PL GLIQDH+ S L+ +D F + + +V+ AL
Sbjct: 726 HQARAEAYEIVKAEEQFYAPTDGKPLRGLIQDHICSAVLLTCKDRFYNKEGFSQIVFAAL 785
Query: 70 CIL----NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLT-PKDKVIIRHGELLSGILDKK 124
L N I+ PPTI KP LWTGK V+ T++ ++ + V ++H S
Sbjct: 786 VDLCDRENLTIKLPPPTILKPRRLWTGKDVMRTILDHVAYQRPGVTLKH----SCKTPHT 841
Query: 125 QFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLS 184
+GS + G + +R + +G++DK FG ++GL+HAV + HG + A LLS
Sbjct: 842 FWGSKEEG--------DLIVRQNYICTGVVDKNAFG--KFGLIHAVAELHGKQIAGKLLS 891
Query: 185 CLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPE 244
L++L T++LQ+ GFT G+ D+++ E + R K + KA AA + + D
Sbjct: 892 VLSRLLTLFLQQHGFTCGMDDLVLVAESEELRVKELAKAGAAAKSAAEAFVQVK-DVPEM 950
Query: 245 IISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESG 304
+ S + P A +D + L++VT+ +VCLP G +PF N L M SG
Sbjct: 951 ALRSAVSARVTERPDSEAALDARSSGALNQVTSATVKVCLPSGTKKPFHRNCLSLMTMSG 1010
Query: 305 AKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQP 364
AKGS VN QI+ LGQ ELEG+R M SG+TLP F P++ PRAGG++ RF +G++P
Sbjct: 1011 AKGSMVNFSQIAAALGQQELEGRRVPRMASGKTLPCFAPFDCDPRAGGYISDRFYSGLRP 1070
Query: 365 QEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGE 424
QE++FHCMAGREGL+DTAVKTSRSGYLQRCLVK+LEGL VHYD TVRD D +++Q LYG+
Sbjct: 1071 QEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNLEGLKVHYDHTVRDVDGTIVQFLYGD 1130
Query: 425 DGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFI 484
DG++V+K Y K+F+F +NI+ L L K LS + K + P
Sbjct: 1131 DGIEVSKGVYA--KEFAFALENIES-------LKLQNKSALS-EFDDSSSKKENSNPEDA 1180
Query: 485 FSPHRTKFTMDLLEQWYQLDDKARKKYRK--KFKACPQPLISTFQPDAHF--GSISENLA 540
F +T+ D+ + + K+Y + P+ H G S+
Sbjct: 1181 FMDKKTRAFPDVPRNASSVVEH-EKRYSQFTSLGILPEKFAKDLDDFLHVTHGIPSDEEF 1239
Query: 541 DSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHF 600
+ K T+ +F ++ K + S+A+PGE VGV+AAQS+GEPSTQMTLNTFHF
Sbjct: 1240 EQAHKVTR--------KEFAKIMNLKFIASMASPGEAVGVVAAQSVGEPSTQMTLNTFHF 1291
Query: 601 AGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKK-ANRLAKSMTRITMA 659
AGRG+ NVT+GIPRLRE+LM A++ P M +P D K+ KK A+RLA + ++T A
Sbjct: 1292 AGRGEANVTMGIPRLRELLMAASRKPTLPVMTMPLRKD--KMAKKYADRLASRLRKVTFA 1349
Query: 660 DVLEKVKIKEWLEISPEPHMNYQMKFCFI------PAHMYRDKTSVKPSKIIDHFERKFL 713
++++ + + L + P + + C + P + K SV ++ F+ +L
Sbjct: 1350 ELVQDLSCETRL-YADAPSDGCKARVCEVKVTMRCPDEFSKAKGSVTFEEMEACFKETYL 1408
Query: 714 KELEVAIAK 722
EL I K
Sbjct: 1409 AELYAIIKK 1417
Score = 105 bits (263), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 87/149 (58%)
Query: 869 LKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 928
++ DG++ + L+D+N++ ND+ + T G+EAA R ++ E+ VF YGI VD
Sbjct: 1677 VQCDGVSFDAAFANEDLVDVNRIKANDVWQVRLTLGVEAARRTLVDEISGVFGAYGIGVD 1736
Query: 929 PRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPS 988
RHLSL++D+M G Y +R GI + S KMT+E + +A+++G D L+ PS
Sbjct: 1737 ARHLSLISDFMCQQGGYRPFSRVGINDSTSPFLKMTYETATAFLTEAAIRGDVDKLKNPS 1796
Query: 989 ARVMLGQECRQGTGLFQLRNREKKKKKVE 1017
A ++LG+ GTG L+ ++ K+E
Sbjct: 1797 AAIVLGKMVNVGTGSIGLQYDAERATKME 1825
>gi|357114820|ref|XP_003559192.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like
[Brachypodium distachyon]
Length = 1868
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 297/854 (34%), Positives = 443/854 (51%), Gaps = 130/854 (15%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA +++ + QY+ P+ G + GLIQDH++S L+ DTF++R EY LVY + C+
Sbjct: 822 RAEAMNIVDANKQYIGPRSGDAVRGLIQDHIVSAVLLTKLDTFISREEYSQLVYGS-CVS 880
Query: 73 NTE-----------------IRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDK--VIIRH 113
+T + LPP I KP PLWTGKQV++T++ +LT + +
Sbjct: 881 STRSPCQSGKRVSVMKDGDILELLPPAILKPKPLWTGKQVITTILNHLTKGHPPFTVEKK 940
Query: 114 GELLSGILDKKQFGSTQYGLVHAVWDTH--VTIRHGELLSGILDKKQFGSTQYGLVHAVW 171
G++ L K+ ++G D+ + I EL+ G++DK QFG+ YG+VH V+
Sbjct: 941 GKIPVKYLIPKE----RHGDKDNAKDSEQVLYIHDNELIKGMIDKDQFGN--YGIVHTVY 994
Query: 172 DTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEA- 230
+ +GAE A LLS ++LFT++LQ GFT G+ D+L+ QE D++RT+ + + + E
Sbjct: 995 ELYGAETAGRLLSIFSRLFTLFLQLHGFTCGIDDLLLFQESDKQRTETLMTSEKCSEEVH 1054
Query: 231 ---ACNALGLPLDTDPEIISSQLQEAYASIPQFRAQ-IDRQYKSLLDKVTNNINQVCLPE 286
C D DP + ++++ I + +D+ S L+ + + +N+ P
Sbjct: 1055 RKFTCAG---DYDEDPLKLQMEVEKVVRRIGESATDTLDKMMLSALNGLQSEVNRRLFPY 1111
Query: 287 GLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEV 346
GL +PFP N L M +GAKG VN QI+ LLG +LEG R M+SG++LP F P++
Sbjct: 1112 GLQKPFPRNCLTLMTATGAKGGEVNMTQITSLLGSQDLEGARVPRMISGKSLPCFPPWDT 1171
Query: 347 SPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHY 406
S RAGGFV RF+TG++PQE++FHCMAGR GLIDTAVKTSRSGYLQRCLVK LE L V Y
Sbjct: 1172 SSRAGGFVSDRFLTGLRPQEYYFHCMAGRNGLIDTAVKTSRSGYLQRCLVKSLESLFVAY 1231
Query: 407 DMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQ----FSFLEDNIKWICSYKVILNLLKK 462
D TVR+ D S++Q YGEDG+DV K +L Q F L DN K +L+ L +
Sbjct: 1232 DHTVRNVDGSIVQFRYGEDGVDVHKSNFLDKFQDKDMFKELADN------RKAVLDRLGR 1285
Query: 463 HPLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPL 522
+ +G + S + T+ L ++ + K + + R K
Sbjct: 1286 Y--------------TGDHMSLQSNYITELPEALTDRATKFLSKDKGRCRHDIK------ 1325
Query: 523 ISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLA 582
D ++ K + AS VD PGE VGV+
Sbjct: 1326 -----------------EDELMNLLKAKYLASLVD----------------PGEAVGVIL 1352
Query: 583 AQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKL 642
AQS+GEPSTQMTLNTFHFAGR D+NVTLG+PR++EILM A+ I TP M P L D+
Sbjct: 1353 AQSLGEPSTQMTLNTFHFAGRSDVNVTLGMPRIQEILMKASANIATPVMMCPLLEDV--T 1410
Query: 643 EKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMN--------YQMKFCFIPAHMYR 694
A RLA + + + D++E + E+ P N Y+++ P Y
Sbjct: 1411 WDDAERLAAKLRGVRLVDIVEGI------EVCTVPFYNNNGYVSSLYKLQIKLFPPERYP 1464
Query: 695 DKTSVKPSKIIDHFERKFLKELEVAIAKR-----AAQGLKNMNIEQSRDQMEDDVEDDEG 749
++ + + F+ +E AI K G++ ++ + + + E+ EG
Sbjct: 1465 PQSELTVDECQTALRTVFVDSMEFAIEKHLKLLYRVSGIQETRVKDTESSLSEGPEESEG 1524
Query: 750 EGAEG--AGAALG----RVDVSSDEE---RDEEDAVQSHKKVNQE-EDNDFEEPEDEERM 799
+G +GA+ G D+ +D E R E D ++ + + E ED +PE+E +
Sbjct: 1525 RPIDGEESGASDGDNENEDDLGTDGEKRKRQENDEMEYDGEDDVEKEDGMNSDPEEETKY 1584
Query: 800 SEREEDDNTSNIGE 813
+DD + GE
Sbjct: 1585 ELDNDDDLVESGGE 1598
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 87/147 (59%), Gaps = 1/147 (0%)
Query: 861 EEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 920
E+K LKT G+N + + LD+ K+ NDIH + TYG+EAA II+EVK VF
Sbjct: 1710 EKKGDFRGLKTAGVNFDVFWGLQDYLDICKVASNDIHAILRTYGVEAARATIIKEVKAVF 1769
Query: 921 AVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQG 979
+GI V+ RHLSLVA++MT G Y AM+ G+ + S KMTFE I +A+ G
Sbjct: 1770 EPFGINVNRRHLSLVAEFMTSGGDYRAMSSMGMAQFCTSPFGKMTFEQATRFITEAAFYG 1829
Query: 980 REDSLRAPSARVMLGQECRQGTGLFQL 1006
D+L PSA + LG+ + GTG F L
Sbjct: 1830 EADNLNGPSATISLGKPAKTGTGCFGL 1856
>gi|255728119|ref|XP_002548985.1| hypothetical protein CTRG_03281 [Candida tropicalis MYA-3404]
gi|240133301|gb|EER32857.1| hypothetical protein CTRG_03281 [Candida tropicalis MYA-3404]
Length = 845
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 280/836 (33%), Positives = 426/836 (50%), Gaps = 147/836 (17%)
Query: 264 IDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIE 323
+D +S ++ +T+ + C+P+G ++ FP N++Q M SGAKGS VN QI CLLGQ
Sbjct: 56 LDAITQSKVNAITSQVVSKCVPDGTMKRFPYNSMQAMALSGAKGSNVNVSQIMCLLGQQA 115
Query: 324 LEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAV 383
LEG+R +MVSG+TLPSF P+E RAGG++ RF +GI+PQE++FHCMAGREGLIDTAV
Sbjct: 116 LEGRRVPVMVSGKTLPSFKPFETDARAGGYIKQRFYSGIRPQEYYFHCMAGREGLIDTAV 175
Query: 384 KTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFL 443
KTSRSGYLQRCL K LEG+ V YD +VRD+D +LIQ LYG D +D TK+ ++ QF F
Sbjct: 176 KTSRSGYLQRCLTKQLEGVHVSYDNSVRDADGTLIQFLYGGDAIDTTKQSHMN--QFKFC 233
Query: 444 EDNIKWICSY----KVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQ 499
DN + + +I N+ LS + + + K PH EQ
Sbjct: 234 ADNYDALLAKYNPGDMIENIDTDAALSYSKKVRKSLKKQKD-----VPH--------YEQ 280
Query: 500 WYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLAD----------SVVKYTKG 549
+ D P+++ + P + GS+SE + SV +K
Sbjct: 281 VVKYD----------------PVLNVYNPAKYLGSVSEKFQEKLDDFAAKNPSVFAQSKE 324
Query: 550 RTDAS---HVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDM 606
A+ KF ++ K + SL NPGE VG++A+QSIGEPSTQMTLNTFHFAG G
Sbjct: 325 EAKATGKLTEKKFRALMQLKYMRSLINPGEAVGIIASQSIGEPSTQMTLNTFHFAGHGAA 384
Query: 607 NVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVK 666
NVTLGIPR+REI+M A+ +IKTP M +P L D+ E A+ KS+ R+ +++ ++KV
Sbjct: 385 NVTLGIPRMREIIMTASASIKTPQMTLPILDDVNDTE--ADTFCKSVARVVLSEFVDKVI 442
Query: 667 IKEWLEISPEPH--MNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRA 724
+ E + +Y + F Y + + +++ D FL++LE
Sbjct: 443 VTETTSQDEDGSNSRSYVINLQFYTKEEYESEYDISQAQLEDVITSNFLRQLE------- 495
Query: 725 AQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEE----------- 773
+Q +K + ++ D + G + G+ D+ + + +E
Sbjct: 496 SQIVKEVKKQKRPDHLP------------TVGKSAGKTDMETVSGKIQEVRDEHDDEEEI 543
Query: 774 --DAVQSHKKVNQEEDNDFEEPEDEE----RMSEREEDDNTS------------------ 809
D + K N ++ +E P+D+E + +E D+ +
Sbjct: 544 DEDHDEEQAKQNVKQQVSYEGPDDDEIETMKRAEETSDEEMADADSSSDSESDSESEDEE 603
Query: 810 ---NIGERFK-IEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC------------KLL 853
++ + K +E S +V+ HN+V K+++D N WC KLL
Sbjct: 604 GDVDMDKSSKPVEMSRSAKDRQSEVIASHNMVTKFNFDDDNGEWCEFKLELNGDETQKLL 663
Query: 854 FLPSNLFEE-----------------------KESKHLLKTDGINVNFISQYRHLLDLNK 890
+ N+ E+ K + +L T+G+N + +++N
Sbjct: 664 MV--NIVEDILRTVVVREIPRIGRCVHPEPDAKTGQRILTTEGVNFKAMWDQEDFINVNG 721
Query: 891 LYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNR 950
+ NDI+ + TYG+EAA I+ E+ VF YGI V RHL L+AD MT GTY+A NR
Sbjct: 722 ITSNDIYAVLKTYGVEAARNTIVNEIYRVFNTYGISVSSRHLDLIADMMTREGTYLAFNR 781
Query: 951 NGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
GI + S KM++E + + +A + G + L +PS+++++G+ GTG F +
Sbjct: 782 QGIDSSTSAFMKMSYETTCQFLTKAVLDGDREELESPSSKIVMGKLASVGTGSFDV 837
>gi|294868586|ref|XP_002765594.1| DNA-directed RNA polymerase I largest subunit, putative [Perkinsus
marinus ATCC 50983]
gi|239865673|gb|EEQ98311.1| DNA-directed RNA polymerase I largest subunit, putative [Perkinsus
marinus ATCC 50983]
Length = 1775
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 301/862 (34%), Positives = 442/862 (51%), Gaps = 130/862 (15%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL--- 69
+AEA ++ + QYL P G PL GLIQDHV+SG L+ RD F+ + E NL+Y A+
Sbjct: 631 RAEAIYIASADHQYLGPTSGKPLRGLIQDHVVSGVFLTARDHFMRKTEVQNLIYTAMRAA 690
Query: 70 -----------------CILNT--------EIRTLPPTIWKPMPLWTGKQVLSTVIINLT 104
L T I PP I KP LWTGKQV++ + +L
Sbjct: 691 IEGDTSGIGSVKSRGQVTKLTTPAGVPKDFRIVMEPPVIVKPQTLWTGKQVITIFLKSLI 750
Query: 105 -----PKDKVIIRH----------GELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGEL 149
DK I+ G+L G+ D + + VTIR EL
Sbjct: 751 KFATHSTDKAIVNGFNHHAKAKTPGDLWGGVSDGNK------------EEQMVTIRDTEL 798
Query: 150 LSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVR 209
+ G+LDK FG+T GL H ++ G + A LL+ + ++ T+YLQ GFT +RD+L+
Sbjct: 799 IEGVLDKASFGATANGLTHLFYELCGPKAAGLLLTGMGRMLTLYLQYHGFTCAMRDLLIT 858
Query: 210 QERDRKRTKIINKARRLGTEAACNAL-GLPLDTDPE--------IISSQLQEAYASIPQF 260
E D R +++ KAR E + N + + PE + ++ + YA+ P+
Sbjct: 859 PEGDEARLQMLRKAR----EDSWNKIRDWVKENSPEEANVKTLHKLQKEIGKLYAADPKV 914
Query: 261 RAQIDRQYKSLLDKVTNN----INQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQIS 316
+ + + + + + + + P+G + PFP N MV +GAKGS VN I
Sbjct: 915 QHPMFEELEETMLSTNRDYWGKLIDILFPKGQVSPFPDNCFSAMVSTGAKGSKVNHSMID 974
Query: 317 CLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGRE 376
+LGQ ELEG R M + R LPSF Y++ PRAGG++ RF+TG +PQEFF+HCMAGRE
Sbjct: 975 AMLGQQELEGHRAPRMRNQRFLPSFAQYDIGPRAGGYITDRFLTGYRPQEFFYHCMAGRE 1034
Query: 377 GLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLT 436
GL+DTAVKT+RSGYLQRCLVK+LEG+T++YD TVRD+D S+++ LYGEDG+DVTK +L
Sbjct: 1035 GLVDTAVKTARSGYLQRCLVKNLEGITINYDYTVRDTDSSIVEFLYGEDGMDVTKVSHL- 1093
Query: 437 DKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPHRTK----- 491
+QF L++N ++ + K +L L K + KP S RTK
Sbjct: 1094 -EQFDVLDENSAFMAKSAAVAKEEAKMESNLPALYR---KWAEKPQ---SGRRTKELVKE 1146
Query: 492 ----FTMDLLEQWYQLD--DKARKKYRKKFKACPQ----------PLISTFQPDAHFGSI 535
+ L + Q+D DK R + ++ + P+ S P G++
Sbjct: 1147 VRESIRVLLSDGGNQVDASDKLRDEEKEHIAFVVKDTHTNGGKAPPMNSMLPPWRFTGAM 1206
Query: 536 SENLADSVVKYTKGRTDASH----VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPST 591
SE +++ +Y R + ++F D+I +K +LA+PGE VG LAAQ +GEPST
Sbjct: 1207 SEREENALTEYLSHRPEELEKKMPTEEFRDVIMHKYARTLADPGEAVGTLAAQGMGEPST 1266
Query: 592 QMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAK 651
QMTLNTFH AG G +NVTLGIPRLREI+ A++ ++TP+ME P L + K A L
Sbjct: 1267 QMTLNTFHLAGHGGVNVTLGIPRLREIVQTASRHLETPAMEFPVLGGL----KVAEELKG 1322
Query: 652 SMTRITMADVLEKVKIKEWL---EISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHF 708
MTR+++ DV+ + E + + S E Y++ + M + I HF
Sbjct: 1323 KMTRVSLKDVVVATHVLESVTAAQPSGETMRTYELVVELVDPVMIQKAYPSLSQTAIAHF 1382
Query: 709 ------------ERKFLK--ELEVAIAKRAAQ---GLKNMNIEQSRDQMEDDVEDDEGEG 751
+KF+K E I R AQ G ++ E D+ + + D+G+
Sbjct: 1383 LDHDFRDKLNSNLKKFIKISESTSTITSRKAQQEEGAADVFNEIPEDENNAE-QKDQGDE 1441
Query: 752 AEGAGAALGRVDVSSDEERDEE 773
++ L + ++DEER+ E
Sbjct: 1442 SQNVTRTLAQRARATDEEREAE 1463
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 89/145 (61%), Gaps = 1/145 (0%)
Query: 863 KESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 922
+ K ++T+G+N++ I+ +D +++ NDI + YG+EAA I++EV VF
Sbjct: 1603 QSDKVTIETEGVNLD-IAWGLDGIDHDRIVTNDIGLILDRYGVEAARAAIVQEVLRVFGH 1661
Query: 923 YGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGRED 982
YGI VDPRHL L++DYMTH G + +R G+ + S +MTFE + + +A + D
Sbjct: 1662 YGIGVDPRHLMLISDYMTHHGGFRPFSRRGMEAHASPWLQMTFETSVNFLTKACNNAQYD 1721
Query: 983 SLRAPSARVMLGQECRQGTGLFQLR 1007
+L++P+ +++G++ GTG F LR
Sbjct: 1722 TLKSPAGSIIVGKQASVGTGCFDLR 1746
>gi|255571576|ref|XP_002526734.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
communis]
gi|223533923|gb|EEF35648.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
communis]
Length = 1686
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 294/785 (37%), Positives = 420/785 (53%), Gaps = 125/785 (15%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA ++N ++Q++ P +G PL GLIQDH++S L+ +DTFL++ E+ L+Y +
Sbjct: 615 RAEAYNIVNANNQFVRPSNGEPLRGLIQDHIVSAVLLTKKDTFLSQDEFNQLLYSSGVST 674
Query: 73 -------------------NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDK--VII 111
EI+TLPP IWKP PLWTGKQV++ ++ ++T +
Sbjct: 675 VGPNSFHGRPGQKVLWSRSEDEIQTLPPAIWKPKPLWTGKQVITAILNHITSDHPPFTVE 734
Query: 112 RHGELLSGILDKK--------QFGSTQYGLVHAVWDTH-VTIRHGELLSGILDKKQFGST 162
+ ++ S + + S + D + + EL+ G++DK QFG
Sbjct: 735 KDAKIPSNFFKSRANEDKPCQEEKSDKDAPAEKEPDEEKMLVYKNELVRGVIDKGQFG-- 792
Query: 163 QYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINK 222
+YGLVH V + G+ A LLS L++LFT YLQ GFT GV D+L+ +D +R K +
Sbjct: 793 EYGLVHTVHELLGSHTAGILLSVLSRLFTAYLQMHGFTCGVDDLLILTNKDEERKKQLEW 852
Query: 223 ARRLGTEAACNALGLP---LDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLD-KVTN 277
+ G N +G+ + DP + +++ S A +DRQ + L+ K ++
Sbjct: 853 CEKSGEAVHRNFIGIKDEKIKIDPVAMQLNIEKTIRSDGDSALAYLDRQMSNELNTKTSS 912
Query: 278 NINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRT 337
+ L +GL++P N + M SGAKGS VN QIS LGQ ELEGKR MVSG+T
Sbjct: 913 GVISNLLSDGLLKPSGKNCISLMTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKT 972
Query: 338 LPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVK 397
LP F P++ + R+GG++ RF+TG++PQE++FHCMAGREGL+DTAVKTSRSGYLQRCL+K
Sbjct: 973 LPCFHPWDWAARSGGYITDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIK 1032
Query: 398 HLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVIL 457
+LE L + YD TVRD+D S++Q YGEDG+DV Q SF I +K
Sbjct: 1033 NLECLKIGYDHTVRDADGSVVQFYYGEDGVDV--------HQTSF-------IAKFK--- 1074
Query: 458 NLLKKHPLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQ-LDDKARKKYRKKFK 516
LAL + +K SG F+ + ++ L E+ + LDD
Sbjct: 1075 --------ELALNQDMIYKRSGGQLGAFNSYISELPEALKEKADRFLDD----------- 1115
Query: 517 ACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGE 576
SI +A ++VK R D Y+++ K LLSLA PGE
Sbjct: 1116 ----------------FSIMGRIASNLVK----RED------LYNLMKQKFLLSLAQPGE 1149
Query: 577 NVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFL 636
VGVLAAQS+GEPSTQMTLNTFH AGRG+MNVTLGIPRL+EILM A+ IKTP M P
Sbjct: 1150 PVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASIDIKTPIMTCPL- 1208
Query: 637 PDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCFI-------- 688
+ + A+ LA + ++T+AD++E +E+S P C I
Sbjct: 1209 -QEGRTNEDADHLADKLRKVTVADIVES------MEVSVVPFAIQDGGVCRIYKLKMKLY 1261
Query: 689 -PAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRA-----AQGLKNMNIEQSRDQMED 742
PAH Y ++ + E FL+ELE AI G+K+ + +SR +
Sbjct: 1262 RPAH-YPQYANISVEDWEETLEVVFLRELEDAIQNHMFLLSRISGIKDF-LPESRSRASG 1319
Query: 743 DVEDD 747
+ ++D
Sbjct: 1320 EADED 1324
Score = 123 bits (308), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 65/148 (43%), Positives = 89/148 (60%), Gaps = 1/148 (0%)
Query: 863 KESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 922
KE L G++ N + + LD+ +Y N+IH M TYG+EAA IIRE+ +VF
Sbjct: 1536 KEKVPALHATGVDFNTFWKMQDHLDVRYIYSNNIHAMLKTYGVEAARETIIREINHVFKS 1595
Query: 923 YGIEVDPRHLSLVADYMTHSGTYVAMNR-NGIRLNPSFIQKMTFEMPLEKIRQASMQGRE 981
YGI V RHLSL+AD+MTH+G Y M+R GI + S KM+FE + I +A++ G
Sbjct: 1596 YGIAVSNRHLSLIADFMTHTGGYRPMSRMGGIAESISPFSKMSFETASKFIVEAALHGEI 1655
Query: 982 DSLRAPSARVMLGQECRQGTGLFQLRNR 1009
D+L PSAR+ LG + GTG F L +
Sbjct: 1656 DNLETPSARICLGLPVKMGTGSFDLMQK 1683
>gi|123356996|ref|XP_001295664.1| RNA polymerase Rpb1, domain 2 family protein [Trichomonas vaginalis
G3]
gi|121874683|gb|EAX82734.1| RNA polymerase Rpb1, domain 2 family protein [Trichomonas vaginalis
G3]
Length = 1004
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 275/775 (35%), Positives = 421/775 (54%), Gaps = 74/775 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALC-I 71
+AEA+ L S Y+ P G+P+ GLIQDHV +GA L++++ FLT+ +Y LV+ A
Sbjct: 169 RAEANILSLSSRHYITPTAGNPIRGLIQDHVDAGALLTMKNNFLTKTQYQELVFTAFGGE 228
Query: 72 LNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPK--DKVI-IRHGELLSGILDKKQFGS 128
+N ++ LPP I KP LWTGKQV+ST+IINLT D+++ + +S IL
Sbjct: 229 INHKLEMLPPAIIKPTQLWTGKQVISTIIINLTKNLSDQMMDLTSNSKISSIL------- 281
Query: 129 TQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAK 188
YG +T V G L +GI+DK QFG++++G+VH +++ +G++ A L+ L +
Sbjct: 282 -CYGCKE---ETTVRFVDGHLCTGIIDKAQFGASKFGMVHTIYELYGSDMASRFLTMLTR 337
Query: 189 LFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAA---CNALGLPLDTDPEI 245
LFT ++Q GF+ G+ D++V + + R K+ + ++ + A G +T
Sbjct: 338 LFTYFMQCHGFSCGIADMIVNHKGEGMREKMKEETDKVAIKTANDFVEEFGTK-ETQYMN 396
Query: 246 ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGA 305
+ +L + + + D L+K ++ P + +PFP N+L M SGA
Sbjct: 397 LKDRLWDLIKD-KDMKERYDHMIMGNLNKAASDTLNAIFPANITKPFPQNHLTMMTSSGA 455
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS VN QISCLLGQ LEGKR +M SG+ LPSF ++SP++GGFV RF+TG+ P+
Sbjct: 456 KGSVVNATQISCLLGQQSLEGKRVPLMRSGKALPSFEFMDMSPQSGGFVSSRFLTGLTPE 515
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
E++FH M GREGL DTAVKT+ +GYLQRC++K++EGL YD TVRD+D +++Q LYGED
Sbjct: 516 EYYFHAMGGREGLTDTAVKTANTGYLQRCIIKNIEGLRASYDGTVRDADDTIVQFLYGED 575
Query: 426 GLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIF 485
G+D + +Y+T +F F+ +K I SY LN+ K
Sbjct: 576 GIDPMQNKYIT--KFDFM---LKNIDSYSQKLNIEKVGE--------------------- 609
Query: 486 SPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLI-STFQPDAHFGSISENLADSVV 544
K DL ++ +D + K L+ +T+ P + GSIS++ +++
Sbjct: 610 -----KANCDLAQKV--IDGE---------KVNENSLVQATYHPHRYVGSISQSFENALN 653
Query: 545 KYT----KGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHF 600
KY K TD + + + S PGE VGV+AA++IGEP+TQMTLNTFH
Sbjct: 654 KYCDDLKKKGTDEDTIKNLRAVAVFNYFSSQIQPGEVVGVIAAEAIGEPATQMTLNTFHL 713
Query: 601 AGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMAD 660
AG G NVTLGIPRLREIL++AT+ TP M FL EKK RI + D
Sbjct: 714 AGYGGTNVTLGIPRLREILIVATRTPATPMM---FLSLSMDDEKKCQEFLTEFKRIPLKD 770
Query: 661 VLEKVKIKEWLEISPEPHMNYQMKFC--FIPAHMYRDKT-SVKPSKIIDHFERKFLKELE 717
V+E+ ++E + E + +++ IP + + K + I HF + K+L
Sbjct: 771 VVEQFTVRESMNAISEVRLERKIEVTIKLIPDNFPQGKNFNFAIDSIRSHFATQIKKKLN 830
Query: 718 VAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRVDVSSDEERDE 772
+ ++ + + E + + D+ +E GA+ + L R + + E+D+
Sbjct: 831 SILRQKGDHIREIASDETATAEQVRDMTKEEEMGADRS-KVLSRRNEQNSYEKDD 884
>gi|15230368|ref|NP_191325.1| DNA-directed RNA polymerase I subunit A1 [Arabidopsis thaliana]
gi|4678281|emb|CAB41189.1| DNA-directed RNA polymerase I 190K chain-like protein [Arabidopsis
thaliana]
gi|332646163|gb|AEE79684.1| DNA-directed RNA polymerase I subunit A1 [Arabidopsis thaliana]
Length = 1670
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 282/761 (37%), Positives = 405/761 (53%), Gaps = 132/761 (17%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA---- 68
+AEA ++N ++QY P +G PL LIQDH++S L+ RDTFL + + L++ +
Sbjct: 619 RAEAYNIVNANNQYARPSNGEPLRALIQDHIVSSVLLTKRDTFLDKDHFNQLLFSSGVTD 678
Query: 69 ---------------LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLT--------- 104
+ + E+ T+ P I KP+PLWTGKQV++ V+ +T
Sbjct: 679 MVLSTFSGRSGKKVMVSASDAELLTVTPAILKPVPLWTGKQVITAVLNQITKGHPPFTVE 738
Query: 105 -----PKDKVIIRHGELL--SGILDKKQFGSTQYGLVHAVWDTHVT-----IRHGELLSG 152
P D R E+ SG L KK+ + W ++ IR E + G
Sbjct: 739 KATKLPVDFFKCRSREVKPNSGDLTKKK-------EIDESWKQNLNEDKLHIRKNEFVCG 791
Query: 153 ILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQER 212
++DK QF YGLVH V + +G+ A +LLS ++LFTV+LQ GFT GV D+++ ++
Sbjct: 792 VIDKAQFA--DYGLVHTVHELYGSNAAGNLLSVFSRLFTVFLQTHGFTCGVDDLIILKDM 849
Query: 213 DRKRTKIINKARRLGTEAACNALGLPLDT--DPEIISSQLQEA-YASIPQFRAQIDRQYK 269
D +RTK + + +G G+ +D DP+ + S+++ Y A +DR
Sbjct: 850 DEERTKQLQECENVGERVLRKTFGIDVDVQIDPQDMRSRIERILYEDGESALASLDRSIV 909
Query: 270 SLLDKVTN-NINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKR 328
+ L++ ++ + L +GL++ N + M SGAKGS VN QIS LGQ +LEGKR
Sbjct: 910 NYLNQCSSKGVMNDLLSDGLLKTPGRNCISLMTISGAKGSKVNFQQISSHLGQQDLEGKR 969
Query: 329 PAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRS 388
MVSG+TLP F P++ SPRAGGF+ RF++G++PQE++FHCMAGREGL+DTAVKTSRS
Sbjct: 970 VPRMVSGKTLPCFHPWDWSPRAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRS 1029
Query: 389 GYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIK 448
GYLQRCL+K+LE L V+YD TVRD+D S+IQ YGEDG+DV + SF+E +
Sbjct: 1030 GYLQRCLMKNLESLKVNYDCTVRDADGSIIQFQYGEDGVDVHRS--------SFIEKFKE 1081
Query: 449 WICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKAR 508
+ ++L + LS G ++I L +
Sbjct: 1082 LTINQDMVLQKCSEDMLS------------GASSYI----------------SDLPISLK 1113
Query: 509 KKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNL 568
K K +A P ++E +A V+ ++ ++ K
Sbjct: 1114 KGAEKFVEAMP---------------MNERIASKFVRQ----------EELLKLVKSKFF 1148
Query: 569 LSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKT 628
SLA PGE VGVLAAQS+GEPSTQMTLNTFH AGRG+MNVTLGIPRL+EILM A IKT
Sbjct: 1149 ASLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAAANIKT 1208
Query: 629 PSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCFI 688
P M P L K ++ AN + + +IT+AD+++ +E+S P+ Y+ + C I
Sbjct: 1209 PIMTCPLLKG--KTKEDANDITDRLRKITVADIIKS------MELSVVPYTVYENEVCSI 1260
Query: 689 ---------PAHMYRDKTSVKPSKIIDHFERKFLKELEVAI 720
P H Y T + + FL++LE AI
Sbjct: 1261 HKLKINLYKPEH-YPKHTDITEEDWEETMRAVFLRKLEDAI 1300
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 90/150 (60%), Gaps = 1/150 (0%)
Query: 861 EEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 920
+EK++ L G++ + +++ LD+ LY N IH M + +G+EAA IIRE+ +VF
Sbjct: 1518 DEKKASPALHASGVDFPALWEFQDKLDVRYLYSNSIHDMLNIFGVEAARETIIREINHVF 1577
Query: 921 AVYGIEVDPRHLSLVADYMTHSGTYVAMNR-NGIRLNPSFIQKMTFEMPLEKIRQASMQG 979
YGI V RHL+L+ADYMT SG Y M+R GI + S +MTFE + I QA+ G
Sbjct: 1578 KSYGISVSIRHLNLIADYMTFSGGYRPMSRMGGIAESTSPFCRMTFETATKFIVQAATYG 1637
Query: 980 REDSLRAPSARVMLGQECRQGTGLFQLRNR 1009
+D+L PSAR+ LG GTG F L R
Sbjct: 1638 EKDTLETPSARICLGLPALSGTGCFDLMQR 1667
>gi|308457540|ref|XP_003091144.1| hypothetical protein CRE_15786 [Caenorhabditis remanei]
gi|308258145|gb|EFP02098.1| hypothetical protein CRE_15786 [Caenorhabditis remanei]
Length = 1245
Score = 434 bits (1115), Expect = e-118, Method: Compositional matrix adjust.
Identities = 248/590 (42%), Positives = 330/590 (55%), Gaps = 55/590 (9%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
SH + E + NV S +LVPKD +PL GLIQDHV+SG L+LRD FL + ++M+LV +
Sbjct: 650 SHIAQTEVREIANVGSNFLVPKDATPLLGLIQDHVVSGVLLTLRDRFLNKEDFMHLVLSS 709
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGS 128
+ I PPTI P LWTGKQV++T++ N P+ K +I L G
Sbjct: 710 FAQYSKRIEIPPPTILYPKRLWTGKQVVTTIVKNCIPEGKPLIN----LDGKAKTPLSCW 765
Query: 129 TQYGLVHAVWD---THVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSC 185
T G +D +HV R GELL G+LDK FG+TQ+GL H ++ +G + LLSC
Sbjct: 766 TVPGFNQPSFDMSESHVVFRQGELLVGVLDKAHFGATQFGLAHCAFELYGHRCGVQLLSC 825
Query: 186 LAKLFTVYLQ---------------RVGFTLGVRDILVRQERDRKRTKIINKARRLGTEA 230
++LFT YLQ GFTLGV DILV +E D KR + + ++R +G +
Sbjct: 826 FSRLFTTYLQVELIKSIASPYSFFQYHGFTLGVADILVVKEADGKRKEAVMESRTIGNQV 885
Query: 231 ACNALGLPLDTDPEIISSQLQEAYASIPQFRA----QIDRQYKSLLDKVTNNINQVCLPE 286
A GLP P I L Y + P+ + +D K + K + I + C+P
Sbjct: 886 VKTAFGLPDTATPTEIKRTLAATYCN-PRGQGTDVKMLDFGMKQGIAKYNDAITKSCVPT 944
Query: 287 GLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEV 346
GL+ FP N LQ M++SGAKGS VN +QIS LGQIELEGKR A+ ++GRTLPSF ++
Sbjct: 945 GLLRLFPQNALQLMIQSGAKGSAVNAIQISGCLGQIELEGKRMAVTIAGRTLPSFRCFDP 1004
Query: 347 SPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHY 406
SPRAGG++D RF+TG+ PQE FFH MAGREGLIDTAVKTSRSGYLQRC++KHLEG+ VHY
Sbjct: 1005 SPRAGGYIDQRFLTGMNPQELFFHTMAGREGLIDTAVKTSRSGYLQRCIIKHLEGIRVHY 1064
Query: 407 DMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWIC--------------- 451
D TVRD D S+IQ YGEDG+D TK +L K FLEDN++ +
Sbjct: 1065 DSTVRDHDGSVIQFRYGEDGMDTTKATFLNKKTMPFLEDNLEAVTLASKPEGVNDNNFGV 1124
Query: 452 -----SYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDK 506
YK I KK S F + N R +L W++L +
Sbjct: 1125 NETEKRYKKITKWKKKASKSEKKSYFSAFTNFSAENAGLDKKR------ILGMWFELSLE 1178
Query: 507 ARKKYRKKF-KACPQPLISTFQPDAHFGSISENLADSVVKY-TKGRTDAS 554
R +Y + K CP+ + F P G++ E + D + + TK R + +
Sbjct: 1179 ERAEYARGVPKKCPEAVDERFNPTCKLGALPEKMLDEIEGFCTKTREEPN 1228
>gi|297817092|ref|XP_002876429.1| hypothetical protein ARALYDRAFT_486216 [Arabidopsis lyrata subsp.
lyrata]
gi|297322267|gb|EFH52688.1| hypothetical protein ARALYDRAFT_486216 [Arabidopsis lyrata subsp.
lyrata]
Length = 1678
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 356/1143 (31%), Positives = 537/1143 (46%), Gaps = 234/1143 (20%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA---- 68
+AEA ++N ++QY P +G PL LIQDH++S L+ RDTFL + + L++ +
Sbjct: 621 RAEAYNIVNANNQYARPSNGDPLRALIQDHIVSSVLLTKRDTFLDKDHFNQLLFSSGVTD 680
Query: 69 ---------------LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLT--------- 104
+ + E+ T+ P I KP+PLWTGKQV++ V+ +T
Sbjct: 681 MVLSSFSGRSGKKVMVSASDAELLTVTPAILKPVPLWTGKQVITAVLNQITKGHPPFTVE 740
Query: 105 -----PKDKVIIRHGELL--SGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKK 157
P D R E+ SG L KK+ + + + + IR E + G++DK
Sbjct: 741 KATKLPVDFFKCRSREVKPNSGDLTKKKKIDESWK--QNLNEDKLLIRKNEFVCGVIDKA 798
Query: 158 QFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRT 217
QF YGLVH V + +G+ A +LLS ++LFTV+LQ GFT GV D+++ ++ D +RT
Sbjct: 799 QFA--DYGLVHTVHELYGSNAAGNLLSVFSRLFTVFLQIHGFTCGVDDLIILKDMDEERT 856
Query: 218 KIINKARRLGTEAACNALGLPLDT--DPEIISSQLQEA-YASIPQFRAQIDRQYKSLLDK 274
K + + +G G+ +D DP+ + S+++ Y A +DR
Sbjct: 857 KQLQECENVGERVLRKTFGIDVDVQIDPQDMRSRIERILYEDGESALASLDRS------- 909
Query: 275 VTNNINQVC--------LPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEG 326
+ N++NQ L +GL++ N + M SGAKGS VN QIS LGQ +LEG
Sbjct: 910 IVNDLNQCSSKGVMNDLLSDGLLKTPGMNCISLMTISGAKGSKVNFQQISSHLGQQDLEG 969
Query: 327 KRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTS 386
KR MVSG+TLP F P++ SPRAGGF+ RF++G++PQE++FHCMAGREGL+DTAVKTS
Sbjct: 970 KRVPRMVSGKTLPCFHPWDWSPRAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTS 1029
Query: 387 RSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTD-KQFSFLED 445
RSGYLQRCL+K+LE L ++YD TVRD+D S+IQ YGEDG+DV + ++ K+ + +D
Sbjct: 1030 RSGYLQRCLMKNLESLKINYDCTVRDADGSIIQFQYGEDGVDVHRSSFIEKFKELAINQD 1089
Query: 446 NIKWICSYKVIL---NLLKKHPLSLALLLLLTFKSSGKPNFIFS-PHRTKFTMDLLEQWY 501
+ CS ++ + + P+SL +G F+ + P + + Q
Sbjct: 1090 MVLQRCSEDMLSGANSYISDLPISL---------KNGAEKFVEAMPMNERIASKFVRQEE 1140
Query: 502 QLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYD 561
L K + KF A S QP G ++ A SV + + T
Sbjct: 1141 LL-----KLVKSKFFA------SLAQPGEPVGVLA---AQSVGEPSTQMT---------- 1176
Query: 562 MIFYKNLLSLANPGE-NVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILM 620
N LA GE NV ++G P Q L T
Sbjct: 1177 ----LNTFHLAGRGEMNV------TLGIPRLQEILMT----------------------- 1203
Query: 621 MATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMN 680
A IKTP M P L K ++ AN + + +IT+AD+++ +++S P+
Sbjct: 1204 -AAADIKTPIMTCPLLKG--KTKEDANDITGKLRKITVADIIKS------MDLSVVPYTV 1254
Query: 681 YQMKFCFI---------PAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAA-----Q 726
Y+ + C I P H Y T + + FL++LE AI +
Sbjct: 1255 YKNEVCSIHKLKINLYKPEH-YPKHTDITEKDWEETMTVVFLRKLEDAIEIHMKMLHRIR 1313
Query: 727 GLKNMNIEQSRDQMEDD----------VEDDEGEGAE----GAGAALGRVDVSS--DEER 770
G+ N ++ ++ ++D DD+GEG E G+ A + V+ D E
Sbjct: 1314 GICNDKGPEAGNETDNDDSVSGKQNKDDGDDDGEGTEVDDLGSDAQKQKKQVTDEMDYEE 1373
Query: 771 DEEDAVQSHKKVNQEED--------------NDFEEPED------EERMSEREEDDNTSN 810
+ ED ++ ED D EP++ EE M ++E N
Sbjct: 1374 NSEDETNEPSSISGVEDPEMDSENEDAEVSKEDTPEPQEEADVSKEETMEPQKEVKAVKN 1433
Query: 811 I-------------------------GERFKIEFR---DSTNVFVKDVVNQHNIVHKYSY 842
+ GE+F++ F+ D ++ + + Q Y
Sbjct: 1434 VKEQSKKKRRKFVGATSDRHIFVRGEGEKFEVHFQFATDDPHILLAQIA-QKTAQKVYIQ 1492
Query: 843 DKKNHMWC--------KLLFLPSNLFEEKE-------SKHLLKTDGINVNFISQYRHLLD 887
D C ++++ N E +E + L G++ + +++ LD
Sbjct: 1493 DSGKIERCTVANCGDPQVIYHGDNPKERREISNDEKKASPALHASGVDFPALWEFQDKLD 1552
Query: 888 LNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVA 947
+ LY N IH M + +G+EAA IIRE+ +VF YGI V RHL+L+ADYMT SG Y
Sbjct: 1553 VRYLYSNSIHDMLNVFGVEAARETIIREINHVFKSYGISVSIRHLNLIADYMTFSGGYRP 1612
Query: 948 MNR-NGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
M+R GI + S +MTFE + I QA+ G +D+L PSAR+ LG GTG F L
Sbjct: 1613 MSRMGGIAESTSPFCRMTFETATKFIVQAATYGEKDTLETPSARICLGLPALSGTGCFDL 1672
Query: 1007 RNR 1009
R
Sbjct: 1673 MQR 1675
>gi|340514005|gb|EGR44276.1| predicted protein [Trichoderma reesei QM6a]
Length = 1666
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 281/739 (38%), Positives = 410/739 (55%), Gaps = 73/739 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL--- 69
+ EA + + QYL G PL GLIQDH+ L RDTF R+++ L+Y AL
Sbjct: 614 RVEALQIADTDHQYLSGTAGKPLRGLIQDHISVSVALCSRDTFFNRSDFQQLIYSALRPE 673
Query: 70 --CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
IL I+ PP I KP P WTGKQV+ST++ N+ P + + E + L +Q+G
Sbjct: 674 SGHILGERIQLPPPAIIKPAPRWTGKQVISTILANMRPPNCGGLTMSE--NAQLKAEQWG 731
Query: 128 S-TQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCL 186
+ ++ G+V I+ GE ++GILDK Q G + G++HAV + +G A LLS L
Sbjct: 732 AGSEEGVV--------LIQDGEFITGILDKSQIGPSSSGMIHAVHEIYGPAIAGKLLSAL 783
Query: 187 AKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPE-- 244
+L T YL F+ G+ D+ + E + R + + A +LG + A + + L D +
Sbjct: 784 GRLLTRYLGMRAFSCGMDDLRLTAEGEAARRRELLAADKLGLKIASSYVSLENQEDAQNP 843
Query: 245 IISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESG 304
++ +L+E + + +D +T+ + + +P GL + FP N +Q M SG
Sbjct: 844 LLLERLEEVMRDDSK-QEGLDLLMNQGSKDITDAVQKALIPNGLEKNFPKNQMQVMTTSG 902
Query: 305 AKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQP 364
AKGS VN ISC LGQ LEG+R +MVSG+TLPSF P++ + RAGG++ RF+TGI+P
Sbjct: 903 AKGSRVNASLISCNLGQQVLEGRRVPVMVSGKTLPSFRPFDTNIRAGGYIVNRFLTGIRP 962
Query: 365 QEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGE 424
QE++FH MAGREGLIDTAVKTSRSGYLQRC++K +EGLTV+YD +VRD+D SLIQ LYGE
Sbjct: 963 QEYYFHHMAGREGLIDTAVKTSRSGYLQRCIIKGMEGLTVNYDTSVRDADGSLIQFLYGE 1022
Query: 425 DGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFI 484
DGLDVTK+ YL D F F+ N+ + LK P K
Sbjct: 1023 DGLDVTKQNYLKD--FRFILQNVTSEAAQ------LKYDP---------------KVGER 1059
Query: 485 FSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVV 544
+R F +++ + + K +K K PL ++F P + + SE +++
Sbjct: 1060 LGANRQAF-----QKYMKSAVRHAKAGDRKGK---DPLTASFDPATNAFATSETFYEAMT 1111
Query: 545 KYTKGRTDA-----------------SHVDKFYDMIF-YKNLLSLANPGENVGVLAAQSI 586
Y + D + K +M+F K L SL PGE VG++A QS+
Sbjct: 1112 DYIRENPDGLVREKNSQDKAPLQQKVTLNKKNAEMLFAMKYLRSLVEPGEAVGIVAGQSV 1171
Query: 587 GEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKA 646
GEPSTQMTLNTFH AG NVTLGIPRLREILM A++ I TP+M + P++ + + +
Sbjct: 1172 GEPSTQMTLNTFHLAGHSAKNVTLGIPRLREILMTASRTISTPAMTLYPNPELSQHDTEI 1231
Query: 647 NRLAKSMTRITMADVLEKVKIKEWLEISPEPHMN--YQMKFCFIPAHMYRDKTSVKPSKI 704
AKS++ + ++ VL+ + ++E + + Y++K F P Y +V S I
Sbjct: 1232 --FAKSISVLRLSQVLDGIVVEELVGKGKLRGLAKIYKIKLKFFPGSEYSSTYAVTVSDI 1289
Query: 705 IDHFERKFLKELEVAIAKR 723
+ E+K L+ + ++I KR
Sbjct: 1290 MTTVEKKLLRNI-LSILKR 1307
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 93/150 (62%)
Query: 857 SNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREV 916
S L +++ + ++ T G+N+ + +Y +D +++ NDI + YG+EA I++E+
Sbjct: 1504 SCLVSQEKGQTVINTTGVNLRAMQRYSDFIDPHRIQTNDIAAVLDVYGVEACRGNIVQEL 1563
Query: 917 KNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQAS 976
VF +GI+VD RHL+L+AD+MT +G + A +R G+R N S KM+FE L ++ A
Sbjct: 1564 SGVFGGHGIKVDNRHLNLIADHMTRNGDFTAFSRMGLRGNVSPFTKMSFETTLGFLKDAL 1623
Query: 977 MQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
M G D L PS+R+++G+ R GTG F +
Sbjct: 1624 MDGDWDDLTTPSSRLVMGKLGRVGTGGFDV 1653
>gi|341038609|gb|EGS23601.1| DNA-directed RNA polymerase-like protein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 1713
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 267/734 (36%), Positives = 385/734 (52%), Gaps = 87/734 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL--- 69
+AEA L + QY+ G+PL GLIQDH+ L +DTF R Y L+Y AL
Sbjct: 671 RAEALQLADTDHQYISGTAGNPLRGLIQDHLSVSVMLCSKDTFFDRRTYQQLIYAALRPE 730
Query: 70 --CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELL---SGILDKK 124
I I +PP I+KP+P WTGKQV++T++ N+ P D G+L S + +
Sbjct: 731 SGHITGERIELVPPAIFKPVPRWTGKQVITTILKNIRPPD-----CGDLWMNSSAKIKSR 785
Query: 125 QFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLS 184
+G + V R GE +SGILDK Q G + G +HAV + +G A LLS
Sbjct: 786 SWGPDS-------MEGTVMFRDGEFISGILDKSQLGPSDGGFIHAVHEVYGPSVAGKLLS 838
Query: 185 CLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL----PLD 240
+ +L YL V FT G+ D+ + E ++ R +II A +G E A + L P
Sbjct: 839 GMGRLLNRYLAMVAFTCGMDDLRMTPEGEKNRKEIIKAAANIGLEVAAKYVSLEDQKPTK 898
Query: 241 TDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFM 300
DP ++ + Q ++ K++ I + CLP GL + FP N++Q M
Sbjct: 899 DDPLLLERLEEVLRDDKKQ--EGLELLTNQACAKLSTAITEKCLPAGLEKQFPQNHMQSM 956
Query: 301 VESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMT 360
SGAKGS VN ISC LGQ LEG+R +MVSG+TLPSF P++ RAGG++ RF+T
Sbjct: 957 TISGAKGSPVNANLISCNLGQQVLEGRRVPVMVSGKTLPSFKPFDTDVRAGGYIVNRFLT 1016
Query: 361 GIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQV 420
GI+PQE++FH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL V YD TVRDSD S++Q
Sbjct: 1017 GIRPQEYYFHHMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLRVAYDSTVRDSDGSVVQF 1076
Query: 421 LYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGK 480
L+GEDG+D++K++YL D +F V+ NL + P
Sbjct: 1077 LFGEDGIDISKQKYLNDFEF--------------VLRNLDSQLP---------------- 1106
Query: 481 PNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACP-----QPLISTFQPDAHFGSI 535
+ ++ ++ ++ D+ K+ + ++ P+ + P +
Sbjct: 1107 --------QIRYHEPGVQALFEHKDEVIKRMKSAIRSANSRDPLNPVQNELDPSTFGFAT 1158
Query: 536 SENLADSVVKYTKGRTDA-------------SHVDKFYDMIF-YKNLLSLANPGENVGVL 581
SE +++Y K D + K + I K + SL PGE VG++
Sbjct: 1159 SEKFFAKMMEYVKNNKDGLIKEKGSKESKKGTISRKTAEKILAAKYIRSLVEPGEAVGIV 1218
Query: 582 AAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPK 641
A QSIGEPSTQMTLNTFH AG NVTLGIPRLREILM A+ I TP+M + ++
Sbjct: 1219 AGQSIGEPSTQMTLNTFHLAGHSAKNVTLGIPRLREILMTASARISTPAMTLVVNEELSV 1278
Query: 642 LEKKANRLAKSMTRITMADVLEKVKIKEWL--EISPEPHMNYQMKFCFIPAHMYRDKTSV 699
+ A + AKS++ + + V + ++E + + + ++ F A Y ++
Sbjct: 1279 --EDAEKFAKSISALALMHVTNEAVVREEVGRGLGLPVAKKFHIRLRFFEAEEYTKMYAI 1336
Query: 700 KPSKIIDHFERKFL 713
+++ ERKF+
Sbjct: 1337 TIHDVLNTVERKFI 1350
Score = 111 bits (278), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 90/151 (59%)
Query: 868 LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 927
L+ T G N+ + QY ++ N++ NDI + YG+EA I+RE+ +VFA +GI V
Sbjct: 1562 LVHTSGSNIRAMQQYGDYINPNRIQTNDIAQVLEVYGVEACRNNIVRELSSVFAGHGIAV 1621
Query: 928 DPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAP 987
D RHL+L+AD+MT +G + NR G+ N S KM++E + ++ A + G D+L P
Sbjct: 1622 DQRHLNLIADFMTRNGGFTPFNRIGLTHNVSPFTKMSYETTVGFLKDAVLDGDWDTLATP 1681
Query: 988 SARVMLGQECRQGTGLFQLRNREKKKKKVEA 1018
S+R+++G+ GTG F + R + +V A
Sbjct: 1682 SSRLVVGKLGTMGTGSFDVLTRVPTEHRVTA 1712
>gi|340508051|gb|EGR33854.1| hypothetical protein IMG5_034860 [Ichthyophthirius multifiliis]
Length = 1642
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 274/706 (38%), Positives = 374/706 (52%), Gaps = 107/706 (15%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
SH +AE + Q++ +G PL LIQD ++S L+ ++ F + E+ L+Y A
Sbjct: 662 SHLARAEGYHISLNDRQFINATNGVPLRELIQDSIVSAVYLTHKEKFFNKEEFQLLLYSA 721
Query: 69 LCIL--NTEIR-------TLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELL-- 117
+ N I+ LPP+I KP LWTGKQ++S +I K++++ +
Sbjct: 722 TWNMFQNNNIQGKPYKIFMLPPSILKPQKLWTGKQLISNII-------KIVVQQNQTKDY 774
Query: 118 -SGILDKKQFGSTQYGLVHAVW--DTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDT 173
GI + + +Q L ++ DT V I+ ELL G+LDK FG+ YGL+H+ ++
Sbjct: 775 EQGIYMEFKSKLSQEEL-SGIYKDDTQVLIKDNELLQGVLDKNSFGAGATYGLMHSFYEL 833
Query: 174 HGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACN 233
+GA L + LAKL + +LQ GFT GV DILV + ++ R + I KA + G AC
Sbjct: 834 YGANLTGKLFTALAKLLSTHLQMHGFTCGVDDILVEKNIEQIRLQEIKKAHKQGL-LACA 892
Query: 234 ALGLP--------------------------------LDTDPEIISSQLQEAYASIPQFR 261
L L T+ +I+ ++Q+ P
Sbjct: 893 REFLDDKEFEIGEKWDLYGRSEIFQDKKRKKKPENDYLSTENQILG-KIQQKLIRDPLSV 951
Query: 262 AQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQ 321
D YKS L + + I + L GLI+ FP NN M SGAKGS VN Q+S LLGQ
Sbjct: 952 ENQDNIYKSTLSQNASTILNITL-NGLIKKFPYNNFSTMTNSGAKGSKVNHTQVSALLGQ 1010
Query: 322 IELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDT 381
ELEGKR M +G+TLP F+PY+ +PRAGGF+ RF++G++P EFFFHCMAGREGLIDT
Sbjct: 1011 QELEGKRVPTMSTGKTLPCFVPYDPNPRAGGFISDRFLSGLRPAEFFFHCMAGREGLIDT 1070
Query: 382 AVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFS 441
AVKTSRSGYLQRCL+KHLE L V YD TVRDSD S++Q YGED +D K +YL +++
Sbjct: 1071 AVKTSRSGYLQRCLMKHLESLKVAYDYTVRDSDNSIVQFYYGEDCIDTNKVKYL--EKYR 1128
Query: 442 FLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWY 501
FL +N K NL + H + L
Sbjct: 1129 FLSENFKSFSQKYEPYNLKESHDFTSVQKFL----------------------------- 1159
Query: 502 QLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVD---- 557
RKK +K + Q ++S F P + GSISE + SV +Y K + +
Sbjct: 1160 ----SKRKKTPEKHQN--QTIMSNFLPGKYIGSISEKVYKSVREYIKKEENQNGYSNIFS 1213
Query: 558 --------KFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVT 609
KF + K L SL PG++VG LAAQ+IGEPSTQMTLNTFH AG G +N+T
Sbjct: 1214 QKPEITPAKFRLLYNIKYLNSLIQPGDSVGCLAAQAIGEPSTQMTLNTFHLAGHGGVNLT 1273
Query: 610 LGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTR 655
LGIPRLREILM AT +KTP+M + F + + A A+ +T+
Sbjct: 1274 LGIPRLREILMTATDKLKTPAMLLNFQDEKNIQYENAQSFARKLTQ 1319
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 81/138 (58%), Gaps = 1/138 (0%)
Query: 869 LKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 928
++ G+N I + H + + + NDI + +YGIEAA I++E+ VF VYG+ VD
Sbjct: 1502 VQVQGVNFKSIWKMEHF-NADTIDSNDIAAINLSYGIEAARNAIVKEIVTVFGVYGVVVD 1560
Query: 929 PRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPS 988
RHL L+ADY+T G AMNR + N S KM+FE ++ + A+ D+L PS
Sbjct: 1561 YRHLYLIADYLTFGGKLKAMNRTWMEENISPFLKMSFETCIKFLTNAATNNEVDNLSTPS 1620
Query: 989 ARVMLGQECRQGTGLFQL 1006
+ +++G+ + GTG+F +
Sbjct: 1621 SSIVVGRVPQVGTGVFDI 1638
>gi|395508814|ref|XP_003758704.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Sarcophilus
harrisii]
Length = 1708
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 266/724 (36%), Positives = 385/724 (53%), Gaps = 95/724 (13%)
Query: 365 QEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGE 424
+EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V YD+T L +VL
Sbjct: 995 KEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTAIRKSKHLDEVL--- 1051
Query: 425 DGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFI 484
+D T+ Q + + L+ +K ++ L L S G N
Sbjct: 1052 SKMDPTQAQQHAKALRKWRAKHPPTCPRRGAFLSYSQKVQAAVQALSL----SGGNQN-- 1105
Query: 485 FSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVV 544
R +L+ W +LD+K+R+K+ KK CP P + ++PD H S+SE V
Sbjct: 1106 ---GRDPRAQQILKMWNELDEKSRRKFVKKALPCPDPSLGVWRPDIHLASVSETFESQVD 1162
Query: 545 KYTKG----------RTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMT 594
YT+ ++D S +D+ ++ K +L +PGE VG+LAAQSIGEPSTQMT
Sbjct: 1163 AYTQQWAAQPERSYEKSDLS-LDRLKTLLHLKWQRALCDPGEAVGLLAAQSIGEPSTQMT 1221
Query: 595 LNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMT 654
LNTFHFAGRG+MNVTLGIPRLREILM+A+ IKTP M +P L + K K+ L K +T
Sbjct: 1222 LNTFHFAGRGEMNVTLGIPRLREILMVASSNIKTPMMSVPVL-NTKKALKRVKSLKKQLT 1280
Query: 655 RITMADVLEKVKIKEW--LEISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKF 712
R+ + +VL+KV ++E+ +E + Y ++F F+P Y+ + ++P+ I+ E +F
Sbjct: 1281 RVCLGEVLQKVDVQEFFCMEEKRSKYRVYCIRFNFLPYKYYQQEKYLRPADILHFVETRF 1340
Query: 713 LKELEVAIAKRA--AQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRVDVSSDEER 770
LK L AI +++ A K ++ ++ Q D + G E GA V D E
Sbjct: 1341 LKLLLEAIKRKSSKASSFKAVSTRRATQQDLDSAGETSGNREEREGAEDEEQIVDGDAEE 1400
Query: 771 DEEDAVQSHKKV-----------------------------NQEEDNDFEEPEDEERMSE 801
+ DA K + + +PE+ + E
Sbjct: 1401 GDADATDKKWKKKQEEEVDYESEEEEQEEENEEDNEREEESTEGGPDQGPQPEEGPQGPE 1460
Query: 802 REEDDNTSNIGERFKIEFRDS----TNVFVKDVVNQHNIVHKYSYDKKNHMWCKL-LFLP 856
E+ + S + + + + + V N H+ + Y +D +WC++ L LP
Sbjct: 1461 AEQPEAPSPGPSKRRARSQGTHGPEAEQRAQAVRNLHSSIQDYQFDVDEGLWCQVTLKLP 1520
Query: 857 ------------------SNLFEEK---------------ESKHLLKTDGINVNFISQYR 883
+ L+E + E + +L T+GIN+ + +Y
Sbjct: 1521 LMKVHFDLCSLVVSLAHSAVLYETRGITRCLLNETTNKNQEKELVLNTEGINLPELFKYA 1580
Query: 884 HLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSG 943
+LDL +LY NDIH MA+TYGIEAA RVI +E+K+VFAVYGI VDPRHLSLVADYM G
Sbjct: 1581 DVLDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEG 1640
Query: 944 TYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGL 1003
Y +NR GI+ N S +Q+MTFE + +++A+M G D LR+PSA +++G+ + GTGL
Sbjct: 1641 VYKPLNRFGIQSNSSPLQQMTFETSFKFLKEATMMGAHDELRSPSACLVVGKVVKGGTGL 1700
Query: 1004 FQLR 1007
F L+
Sbjct: 1701 FDLK 1704
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 114/324 (35%), Positives = 159/324 (49%), Gaps = 75/324 (23%)
Query: 1 MDGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA S +AEA L QYLVPKDG PL+GLIQDH++SGA+++ R F
Sbjct: 562 FDGDEMNAHFPQSELGRAEACVLACTDEQYLVPKDGQPLAGLIQDHMVSGARMTARGCFF 621
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKD--------- 107
TR +YM LVY+ L ++ PP I KP LWTGKQV+ST+++N+ P++
Sbjct: 622 TREQYMELVYRGLTDRVGRVKIFPPAILKPCALWTGKQVVSTLLVNIIPENHIPLNLIGK 681
Query: 108 ---------------------------KVIIRHGELLSGILDKKQFGSTQYGLVHAVWDT 140
+VIIR GELL G+LDK +GS+ YGLV
Sbjct: 682 AKISGKAWIKQSTLAAPGGALDAMCESQVIIREGELLCGVLDKAHYGSSAYGLV------ 735
Query: 141 HVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRV-GF 199
H ++ +G E + +L+CLA+LFT YLQ GF
Sbjct: 736 ---------------------------HCCYEVYGGETSGQVLTCLARLFTAYLQLYKGF 768
Query: 200 TLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQEAYASIPQ 259
TL V DILVR D KR +I ++ G+ A A LP E + ++ Q+A+ S Q
Sbjct: 769 TLDVEDILVRPRADAKRLVVIEESSHCGSRAVRAAFNLPDTASAEDMQTKWQDAHLSKDQ 828
Query: 260 FRAQ-IDRQYKSLLDKVTNNINQV 282
+D ++K ++ +N IN+
Sbjct: 829 RDLNMVDLKFKEEVNHYSNEINKT 852
>gi|402587120|gb|EJW81056.1| hypothetical protein WUBG_08035, partial [Wuchereria bancrofti]
Length = 708
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 250/613 (40%), Positives = 345/613 (56%), Gaps = 72/613 (11%)
Query: 263 QIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQI 322
Q+D + K L++ IN VC+P GLI+ FP N LQ M+ SGAKG+ VN++QISC LGQI
Sbjct: 102 QLDYKMKETLNRFNERINSVCMPAGLIKLFPQNALQLMILSGAKGTMVNSVQISCELGQI 161
Query: 323 ELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTA 382
ELEG RP M +GRTLPSF ++ SPRAGGFVD RF+TGI PQE FFH MAGREGLIDTA
Sbjct: 162 ELEGHRPPMTNAGRTLPSFRSFDTSPRAGGFVDQRFLTGINPQELFFHTMAGREGLIDTA 221
Query: 383 VKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSF 442
VKTSRSGYLQRC+VKHLEGL YD TVRD D S+IQ YGEDG+DV K ++ KQF F
Sbjct: 222 VKTSRSGYLQRCIVKHLEGLVAQYDSTVRDHDGSVIQFRYGEDGMDVCKSTFMNSKQFDF 281
Query: 443 LEDNIKWICSYKVILNL------LKKHPLSLALLLLLTFKSSGKPNFIFSPHRTKFTMD- 495
L DN++ + S + ++ LKK + + K + +++ +F+ +
Sbjct: 282 LADNMQVLRSRVLPIDYNEDDWDLKKCEKAYKKIKKWRRKYDIHKSKVYTSGYVEFSKEY 341
Query: 496 -------LLEQWYQLDDKARKKYRKKF-KACPQPLISTFQPDAHFGSISENLADSVVKYT 547
+ + W++L D+ R +Y K KACP + P+ G++ + L D + Y
Sbjct: 342 RGTPKEKVQKMWFELTDEERYEYHSKAGKACPAAVDEKMNPNRSLGALPQKLLDDIDDYI 401
Query: 548 --KGRTDAS-HVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRG 604
K TDA +D F +++K + +PGENVG+LAAQSIGEPSTQMTLNTFHFAGRG
Sbjct: 402 CRKSTTDADISLDTFRKSLYWKGMRCRVDPGENVGLLAAQSIGEPSTQMTLNTFHFAGRG 461
Query: 605 DMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEK 664
+MNVTLGIPRLREILM A+ IKTPS EI P ++ + + + RI + ++++K
Sbjct: 462 EMNVTLGIPRLREILMTASNDIKTPSAEIHIKPGTSS--ERIETIKRELGRIYLKELIKK 519
Query: 665 VKIKEWLEI-SPEPHMNYQMKFCFIPAHMYRDKTSVKP------SKIIDHFERKFLKELE 717
I E + + E Y ++ + R K ++ +I+ ER+F+K +
Sbjct: 520 FTIDERINLDGKETWRCYDLRI-----ELLRTKERIECIRHISRHRILTEVERRFVKVIG 574
Query: 718 VAIAKRAAQ------------GLKNMNIEQSRDQM-EDDVEDDEGEGAEGAGAALGRVDV 764
I+ R + L N+ + ++ + +DDE E AG G +D+
Sbjct: 575 KRISDRCREMTDYQALQHKKLKLSNLTVGTGDEEAPKSKKQDDELSSDEEAG---GGIDL 631
Query: 765 SSD----------------EERDEEDAVQSHKKVNQEEDNDFE-----EPEDEERMSERE 803
+D E DE+ V S +KV ED E E E+ E ER+
Sbjct: 632 DADGMRILKRHLDDAAEYEGEEDEQRIVLSQQKV---EDTFMEISTESESENAEITVERD 688
Query: 804 EDDNTSNIGERFK 816
D N S++ R +
Sbjct: 689 ADANDSSLDARLR 701
>gi|159477511|ref|XP_001696852.1| DNA-directed RNA polymerase I subunit A [Chlamydomonas reinhardtii]
gi|158274764|gb|EDP00544.1| DNA-directed RNA polymerase I subunit A [Chlamydomonas reinhardtii]
Length = 1515
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 294/852 (34%), Positives = 416/852 (48%), Gaps = 157/852 (18%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
++E +++ QY+VP DG P+ GLIQDHV++ ++ R T+ T EY LVY A
Sbjct: 746 RSEGYVIVHADQQYIVPTDGKPIRGLIQDHVVAATLITKRGTYFTADEYRQLVYIACTPW 805
Query: 73 NT----------------EIRTLPPTIWKPMPLWTGKQVLSTVI---------INLTPKD 107
T +I PP KP LW+GKQV+STVI ++ +
Sbjct: 806 ATGKARPKVTVTAAGSSFDIDLEPPCTLKPRQLWSGKQVVSTVISFFTRGLPPLSFSAGG 865
Query: 108 KVIIRHGELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLV 167
KV + SG D+ QF G L+ G++DK FG +YGLV
Sbjct: 866 KVPASYWGAGSG-EDEMQF------------------HRGALVRGVVDKNAFG--KYGLV 904
Query: 168 HAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILV--------------RQERD 213
HAV + +G A LLS ++LFT YLQ GFT G+ D+L+ + R
Sbjct: 905 HAVQELYGNTTAGKLLSAFSRLFTYYLQWHGFTCGMDDLLLVPGSEARRAALLATAEARA 964
Query: 214 RKRTK--IINKARRLGTEAACNALGLPLDTDP----------EI-ISSQLQEAYASIPQF 260
+ + +++K ++ +A L L DP EI +S++L E Y +
Sbjct: 965 VQASSELLVDKDKKGAKGSAGEGLPAELLADPASHARQLLHYEIKVSAELGERYRTNRDT 1024
Query: 261 RAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLG 320
D + + +++ + +VCLP G + FP N L M +GAKGS VN QISCLLG
Sbjct: 1025 GKAHDMKGSGAMHALSSEVIKVCLPGGQAKAFPQNCLSLMTITGAKGSLVNFSQISCLLG 1084
Query: 321 QIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLID 380
Q ELEG+RP M SG+TLP F PY+ R+ GF+ RF+TG++PQE++FHCMAGREGL+D
Sbjct: 1085 QQELEGRRPPRMASGKTLPCFRPYDGGGRSNGFIGDRFLTGLRPQEYYFHCMAGREGLVD 1144
Query: 381 TAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDS-DLSLIQVLYGEDGLDVTKRQYLTDKQ 439
TAVKTSRSGYLQRCLVK+LE L VHYD TVRD+ D S++ Q
Sbjct: 1145 TAVKTSRSGYLQRCLVKNLESLRVHYDGTVRDNCDASIV--------------------Q 1184
Query: 440 FSFLEDNIKWI-CSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLE 498
F++ ED + + SY L ++ + L F + + +P +
Sbjct: 1185 FAYGEDGLDVMSVSYMRQFGFLARNADRFSQL---AFADALRAYVAANP----------D 1231
Query: 499 QWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDK 558
Q D KK KK + + L++ GS+ L
Sbjct: 1232 GALQAQDAGAKKDGKKDRKKDKELVAAGGRHGGKGSVDGPL------------------- 1272
Query: 559 FYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREI 618
F ++ K + SLA GE VGVLAAQS+GEPSTQMTLNTFH AGRG+ NVTLGIPRLREI
Sbjct: 1273 FGQLMMLKYMRSLAAAGEAVGVLAAQSVGEPSTQMTLNTFHMAGRGEANVTLGIPRLREI 1332
Query: 619 LMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEIS---- 674
LM A IKTP M +P + + E A LA M R+ +A+ L + ++E
Sbjct: 1333 LMTAAPRIKTPVMTLPLVAGLGVPE--AQVLANRMRRLRLAECLSGITVEEQPVARCVGL 1390
Query: 675 PEPHMN-YQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLK----ELEVAIAKRAAQGLK 729
PE Y++ F Y + + +++ F+ F K E+E ++A G+
Sbjct: 1391 PEGFGRVYRVTLAFFKPAQYPPEAKLSFDELVASFQGLFSKRLKHEVEKEAKRKAGVGIG 1450
Query: 730 NMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDND 789
+++ +D +E A AA G +E+ D E K E+ +D
Sbjct: 1451 KVDVSTVQD-------------SETAPAATG------NEDGDGEAGGTERTKKKSEKADD 1491
Query: 790 FEEPEDEERMSE 801
FE+ E +E + E
Sbjct: 1492 FEDAEPDEELRE 1503
>gi|378756627|gb|EHY66651.1| RNA polymerase 2, partial [Nematocida sp. 1 ERTm2]
Length = 1035
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 314/1018 (30%), Positives = 476/1018 (46%), Gaps = 156/1018 (15%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+ EA + ++ +G+P+ G +QDHV+ G R FL R EY ++ AL +
Sbjct: 144 QVEAEEICATDKCFISATNGAPVRGHVQDHVVMGTLFLQRCIFLPRDEYAQMLVTALEEI 203
Query: 73 NTEIRTL--PPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
R + P I +P L+TG Q ++ V+ NL +D T+
Sbjct: 204 QQHRRWVLEKPAILRPARLYTGAQCVTGVMQNLR----------------MDISLAARTK 247
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLF 190
G D + +R+G ++SG LDK Q G+ YGL+HAV + +G A SLL+ L +LF
Sbjct: 248 LG------DDFI-LRNGIVISGALDKSQIGTASYGLIHAVHERYGGRAANSLLTALGRLF 300
Query: 191 TVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEII-SSQ 249
L G + + D++VR E +++R I + G+ +CN +G + + ++
Sbjct: 301 NRALIVRGHSCTMDDLVVRPEAEKQRRVQIEEGLVAGSTVSCNYMGSNMTYLQDTARAAG 360
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
E A A++ +V +GL NN++ MV SGAKGS
Sbjct: 361 RGEVSAEKKDLDAEMRASTSDCASQVLETAGGGLSVQGL-----RNNMRAMVISGAKGSL 415
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
VN QI +LGQ ELEG R +M +GRTLP+F P E +PRA GF+ RF+TG+ P+EF+F
Sbjct: 416 VNLGQIVAMLGQQELEGLRVPLMPTGRTLPTFCPLEPTPRAHGFISQRFLTGVHPEEFYF 475
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
HCMAGREGLIDTAVKTSRSGYLQRCL+KHLEGL V D +VRD+ S+IQ++YG
Sbjct: 476 HCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLRVEVDGSVRDATGSVIQMVYG------ 529
Query: 430 TKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPHR 489
ED + HP A L F F +P +
Sbjct: 530 --------------EDGV---------------HPEKAAYLHKHEF-------FAENPSQ 553
Query: 490 TKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKG 549
+ Q ++D + A + + + G +SE KY
Sbjct: 554 KR-------QNTGIEDSGSLQSAGNASAAGLTVGDLYNARSVPGRVSE-------KYLAS 599
Query: 550 RTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVT 609
A V+K + Y + +PGE VG+LAAQS+GEPSTQMTLNTFH AG G NVT
Sbjct: 600 INAAKAVEKGTEWKRYAQ--ASVDPGEAVGILAAQSVGEPSTQMTLNTFHLAGVGGKNVT 657
Query: 610 LGIPRLREILMMATKAIKTPSMEI-PFLPDMPKLEKKANRLAKS--MTRITMADVLEKV- 665
LG+PRL+EI+M ATK IKTP + + P P+ E+ + ++ +T V E+V
Sbjct: 658 LGMPRLKEIVMHATKKIKTPVITVQAHRPPTPEEERALTISGRRSVLSLLTDISVDEQVF 717
Query: 666 ----KIKEWLEISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIA 721
+ L I P +P + +T+++ F R L L
Sbjct: 718 MHNGDLVRQLNIVATP----------VPGAVLAVETAIR-RDFFSKFSRSMLAFL----- 761
Query: 722 KRAAQGLKNMNIEQSRDQMEDDV----EDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQ 777
+ L + I ++ ++++DV E D E + V + E+ EED +
Sbjct: 762 ----KSLSHQEITETAREIKEDVAQMKEGDTDEEESSESESESEVSADASEKSGEEDEMA 817
Query: 778 SHKKVNQEEDNDFEEPEDEERMSEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIV 837
+ EE ++ + + ++ GE+ + S +
Sbjct: 818 PAEV-------------SEEGCADHVREPSCTSDGEKVYVTLHAS-------------VA 851
Query: 838 HKYSYDKKNHMWCKLLFLPSNLFEEK----ESKHLLKTDGINVNF--ISQYRHLLDLNKL 891
++ Y + +++ + + E E +++++ G++ F + L DL +
Sbjct: 852 YRTLYLPRIESILGAMYIETGVSYENCSYGEGQYVVQQGGLHSLFDRVGSESLLCDLANV 911
Query: 892 YVNDIHYMASTY---GIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAM 948
+ + TY G+EAA IIRE+ VF VYGI VD RHLSL+ADYMTH+GT +
Sbjct: 912 ETARSNSIWETYNVLGVEAARSAIIREIAAVFDVYGIGVDYRHLSLIADYMTHTGTIIPF 971
Query: 949 NRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+R +QK++FE +R A + G D+L PS+ + +G+ GT L Q+
Sbjct: 972 SRGAFSTVGVPMQKISFETAYTFMRDAIVDGSMDNLLNPSSCLAVGKMPVIGTNLTQI 1029
>gi|452820032|gb|EME27080.1| DNA-directed RNA polymerase I subunit A1 [Galdieria sulphuraria]
Length = 2200
Score = 397 bits (1021), Expect = e-107, Method: Compositional matrix adjust.
Identities = 275/782 (35%), Positives = 390/782 (49%), Gaps = 130/782 (16%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL--- 69
++EA L+ Y+ P +G+PL GLIQDH++ G L+ DTFL E+ L+Y A+
Sbjct: 1173 QSEAFNLLLTDRHYISPTNGNPLRGLIQDHILGGVLLTSIDTFLRLDEFQQLLYGAIERT 1232
Query: 70 --CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
+ N + P I P+PLWTGKQV+ST+++ L + L + G
Sbjct: 1233 MESVDNKTVAIPTPAIVFPVPLWTGKQVISTILLFLIGSRPPFYLQS---NNKLKWEMVG 1289
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
D V + G LL G+LDK QFG++ +GLVH+ ++ +GA A LLS L
Sbjct: 1290 D----------DDQVIVHRGHLLRGVLDKSQFGASAHGLVHSFYEIYGAIDAGRLLSALG 1339
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARR----LGTEA-----------AC 232
+LFT++L+ G T GV D+L+ + KR + L TE +
Sbjct: 1340 RLFTLFLRIHGHTTGVDDLLLTTIAEMKRKEWQQYCEMSFVFLATEQWIEKLMERGLLSE 1399
Query: 233 NALGLPLDTD--------PEIISSQLQEAYASI-----------PQFRAQIDRQYKSLLD 273
+L + L T E+ SQL Y I + + +D K +
Sbjct: 1400 ESLSILLGTGDWKSKLKGSELNYSQLLLLYGRILGNMESDVTSRAEMESLLDEIVKKQVS 1459
Query: 274 KVTNNINQVCLP--EGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAM 331
KVT+ + + C+ EG+++ FP N M SGAKGS VNT QISC LGQ ELEGKR
Sbjct: 1460 KVTSEVIKSCISDREGVVKKFPHNGFLLMTSSGAKGSLVNTAQISCQLGQTELEGKRVPR 1519
Query: 332 MVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYL 391
+SG TLP + ++ P++GGF+ RF+TGI+P E+F+HCMAGR+GL+DTAVKT+RSGYL
Sbjct: 1520 SLSGATLPCYPSFDPCPQSGGFIASRFLTGIRPDEYFYHCMAGRDGLVDTAVKTARSGYL 1579
Query: 392 QRCLVKHLEGLTVHYDMTVRDSD-LSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWI 450
QRCLVK LE L V YD TVR S+ ++IQ LYGEDGLD + +L+ +W
Sbjct: 1580 QRCLVKGLEDLYVGYDYTVRQSENQAVIQFLYGEDGLDPCRTAWLSKP------SCFQW- 1632
Query: 451 CSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKK 510
H ++ L + ++S HR+ T+D Y L K +
Sbjct: 1633 ------------HAWNIEAL----------QSTLYSQHRSYQTVD-----YALSPKFQHS 1665
Query: 511 YRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLS 570
+ K C + L + F S E+ Y+N +
Sbjct: 1666 LHQFMKECGESLPQN-RTKEQFQSFMESR-------------------------YRN--A 1697
Query: 571 LANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPS 630
+PGE VGV+AAQ +GEPSTQMTLNTFHFAG G +VTLGIPRLRE+LM A+K KTP
Sbjct: 1698 FISPGEAVGVIAAQGVGEPSTQMTLNTFHFAGMGAAHVTLGIPRLRELLMTASKQPKTPL 1757
Query: 631 MEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCFIPA 690
M IPFL K K L R+ + D LE + I++ + + ++ +P
Sbjct: 1758 MTIPFLSSTDK--KGIQLLHNRFHRLVLKDFLEGISIED--KGNRAQGRLVMIELHLVPP 1813
Query: 691 HMYRDKTSVKPSKIIDHFERKFLKEL---------EVAIAKRAAQGLKNMNIEQSRDQME 741
H Y + ++ E FL L +V+ K+A L+++++ D ME
Sbjct: 1814 HYYATHLGISAKELFHTIETHFLAMLHARIQKECKQVSETKKAIMPLQSLSMHWDSDGME 1873
Query: 742 DD 743
D
Sbjct: 1874 LD 1875
Score = 100 bits (248), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 85/145 (58%), Gaps = 4/145 (2%)
Query: 869 LKTDGINVNFISQYRH-LLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 927
L+ G N+ I +Y + LDLN + ND++ M YG+E+A + E+ VF YGI V
Sbjct: 2052 LEVQGSNLAAIWEYGYDYLDLNHIQTNDVYAMLMHYGVESARETLRIELAKVFGAYGIPV 2111
Query: 928 DPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRA 986
D RHL+L++D MT G Y NR G+ + S IQK +FE ++ I A+ + D++ +
Sbjct: 2112 DSRHLALISDVMTCQGDYQPFNRRGMEKRCCSTIQKASFETTMKFILDAAFHQQTDNIHS 2171
Query: 987 PSARVMLGQECRQGT--GLFQLRNR 1009
PS+R+ +G+ GT G+F LR R
Sbjct: 2172 PSSRLAVGRTVGYGTGEGIFTLRQR 2196
>gi|440795219|gb|ELR16355.1| RNA polymerase Rpb1 protein [Acanthamoeba castellanii str. Neff]
Length = 1699
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 223/458 (48%), Positives = 283/458 (61%), Gaps = 41/458 (8%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S +AEA + QY+VP DGSPL GLIQDHV+ G+ L+ +DT LTR E+ L+Y A
Sbjct: 845 SDLARAEAYTIALGDEQYIVPTDGSPLRGLIQDHVVMGSLLTNKDTMLTREEFQQLLYAA 904
Query: 69 LCIL-----------NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELL 117
+ L T I T+PP I KP+PLW+GKQV+S +++ ELL
Sbjct: 905 ISTLPPTRGSAHLRYQTPIITIPPCIVKPVPLWSGKQVISNLLM-------------ELL 951
Query: 118 SGILDKKQFGSTQYGLVHAVWDTH-----VTIRHGELLSGILDKKQFGSTQYGLVHAVWD 172
G S++ + A W H V +R ELL+GILDK QFG++ YGLVHA ++
Sbjct: 952 KGYQPLNLDSSSK--IPAASWKDHSEEGIVIVRGNELLTGILDKSQFGASAYGLVHATYE 1009
Query: 173 THGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAAC 232
+G++ A LLS L +LFT YL V FT G+ D+L+ E D R ++ KA G E A
Sbjct: 1010 LYGSKKAGELLSALGRLFTFYLNTVAFTCGIDDMLINNEFDSVRQGLLRKANNSGYEVAS 1069
Query: 233 NALGLPLDTD----PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGL 288
LG TD PE+ L +A P D K + +T +I + + +G
Sbjct: 1070 EFLGYS-STDKVDRPEV-RQGLGQAVRD-PDEATTWDNLMKKQMSSMTTDIIKETM-KGQ 1125
Query: 289 IEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSP 348
++ FP NNL M SGAKGS VN QI CLLGQ ELEGKR + M+SG+TLPSF P+E
Sbjct: 1126 VKKFPWNNLTLMTTSGAKGSMVNVSQICCLLGQQELEGKRVSSMISGKTLPSFEPHEAEG 1185
Query: 349 RAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDM 408
RAGG++ RF+TGI+PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLE L V YD
Sbjct: 1186 RAGGYIADRFLTGIRPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLESLRVCYDA 1245
Query: 409 TVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDN 446
TVRDSD S+IQ YGED +D+TK ++L ++FSFL N
Sbjct: 1246 TVRDSDASVIQFNYGEDSIDITKSKHL--ERFSFLSKN 1281
Score = 124 bits (311), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/143 (41%), Positives = 93/143 (65%)
Query: 864 ESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
++K+ ++T+G+N I+Q+ ++DL+ + NDI+ + +T+G+EAA R I E+ VF VY
Sbjct: 1534 QTKYAVQTEGVNFGIIAQFADVVDLSGVRSNDIYAVLTTFGVEAARRSIADEINGVFKVY 1593
Query: 924 GIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDS 983
GI VD RHL+++ADYMT G Y NR G+ ++ S QKM+FE + A+M+G D
Sbjct: 1594 GIGVDHRHLAIIADYMTFEGGYKPFNRAGMNMSTSPYQKMSFETTTVFLADATMRGDWDP 1653
Query: 984 LRAPSARVMLGQECRQGTGLFQL 1006
+ SA ++LG+ GTG F+L
Sbjct: 1654 ISNASASLVLGKVVEGGTGCFEL 1676
>gi|45181579|gb|AAS55440.1| RNA polymerase I largest subunit [Amborella trichopoda]
Length = 542
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 241/607 (39%), Positives = 333/607 (54%), Gaps = 105/607 (17%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA---- 68
+AEA ++N + QY+VP G P+ GLIQDH++S L+ +DTFLT+ EY +L+Y A
Sbjct: 12 RAEAYNIVNANEQYIVPTSGEPIRGLIQDHIVSAVLLTKKDTFLTQEEYHHLLYSACVST 71
Query: 69 ---------------LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDK--VII 111
L + EI L P IWKP PLWTGKQV+ST++ ++T +
Sbjct: 72 VAPDFKHGNLSKKISLVKSDEEISPLLPAIWKPKPLWTGKQVISTILDHVTRGQPPFTVK 131
Query: 112 RHGELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVW 171
R G + +G KK + V + EL+ G++DK QFG ++GLVHAV
Sbjct: 132 RAGRIPAGYFGKKN------------GEYKVLVHKNELVHGVIDKAQFG--KFGLVHAVH 177
Query: 172 DTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAA 231
+ +GA A L S +LFT YLQ GFT GV D+LVRQ + R + ++++ +G
Sbjct: 178 ELYGASAAGRLFSVFTRLFTAYLQMHGFTCGVDDLLVRQCAEMDRRRKLDESETIGDHVH 237
Query: 232 CNALGLPLDTDPEIISSQLQEAYASIPQFR-----AQIDRQYKSLLDKVTNNINQVCLPE 286
+G D E+ ++Q A + + + A++DR S L+++T+ +N PE
Sbjct: 238 SWFIGA---KDAEMDPIRMQAAIGKLVRGKGESAIARLDRMMSSALNRLTSEVNNSLFPE 294
Query: 287 GLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEV 346
GL + FP+N L M SGAKG VN QIS LLGQ ELEGKR MVSG+TLP FLP++
Sbjct: 295 GLSKSFPSNCLSLMTSSGAKGGLVNFTQISSLLGQQELEGKRVPRMVSGKTLPCFLPWDS 354
Query: 347 SPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHY 406
+ RAGG + RF+ G++PQE++FHCMAGREGL+DTA+KT+RSGYLQR L+K+LE L V+Y
Sbjct: 355 AARAGGSISDRFLNGLRPQEYYFHCMAGREGLVDTAIKTARSGYLQRRLMKNLECLRVNY 414
Query: 407 DMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLS 466
D TVRDSD S+I+ +YGEDG+DV K +LT +F FL N K LS
Sbjct: 415 DHTVRDSDGSIIEFIYGEDGVDVVKTSWLT--EFKFLAAN---------------KKTLS 457
Query: 467 LALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTF 526
L + +QL+D +Y K P L
Sbjct: 458 ARLGV-----------------------------HQLEDALPSEYDSYIKDLPDAL---- 484
Query: 527 QPDAHFGSISENLADSVVKYTKGRTDASHVDK---FYDMIFYKNLLSLANPGENVGVLAA 583
E + + K +K + D+ H+ K F +++ K SLA PGE VGV+AA
Sbjct: 485 ---------EEKMNKFIEKLSKKKRDSLHLRKLKHFRNLLKLKYFSSLAQPGEAVGVIAA 535
Query: 584 QSIGEPS 590
QSIGEPS
Sbjct: 536 QSIGEPS 542
>gi|45181575|gb|AAS55438.1| RNA polymerase I largest subunit [Welwitschia mirabilis]
Length = 543
Score = 394 bits (1013), Expect = e-106, Method: Compositional matrix adjust.
Identities = 249/606 (41%), Positives = 337/606 (55%), Gaps = 108/606 (17%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA ++N + Q+ VP G P+ GLIQDH++S L+ +DTFLTR EY NLVY A C+
Sbjct: 12 RAEAYNIVNANQQFTVPTSGDPIRGLIQDHIVSATLLTKKDTFLTREEYQNLVYTA-CVS 70
Query: 73 NTE--------------------IRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR 112
++ LPP IWKP PLWTGKQV++T++ ++T
Sbjct: 71 SSSPFYRYAKDCPKVTIEKDESSFVPLPPAIWKPNPLWTGKQVITTILDHIT-------- 122
Query: 113 HGELLSGILDKKQFGSTQYGLVHA-VW-----DTHVTIRHGELLSGILDKKQFGSTQYGL 166
G L F S + G V W + V IR EL+ G++DK QFG +YGL
Sbjct: 123 -----KGTLP---FSSKKAGRVPPDYWGRDSGEIEVLIRDNELICGVIDKAQFG--KYGL 172
Query: 167 VHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRL 226
VH V + +GA+ A LLS ++LFT +LQ GFT G D+L+ + + +R K + KA++L
Sbjct: 173 VHIVHELYGADAAGRLLSVFSRLFTAFLQMHGFTCGAVDLLLVPKAENERRKKLEKAKKL 232
Query: 227 GTEAACNALGLPLDTDPEIISSQLQEAYASIPQFR-----AQIDRQYKSLLDKVTNNINQ 281
G + LGL + E+ Q++E I + + A++DR S L+ VT+++N
Sbjct: 233 GDKVHLQFLGL---SGQELGEGQMEEEIEKILRSKGETASARLDRLMSSALNGVTSDVNN 289
Query: 282 VCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSF 341
P+GL+ PFP N L M +GAKG VN QIS LLGQ ELEGKR MVSG+TLP F
Sbjct: 290 SLFPKGLLVPFPKNCLSLMTTTGAKGGMVNFTQISSLLGQQELEGKRVPRMVSGKTLPCF 349
Query: 342 LPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEG 401
P++ SPRAGGF+ RF+TG++ QE++FHCMAGR+GL+DTAVKTSRSGYLQRCL+K+LE
Sbjct: 350 SPWDSSPRAGGFISDRFLTGLRLQEYYFHCMAGRDGLVDTAVKTSRSGYLQRCLIKNLEC 409
Query: 402 LTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLK 461
LTV YD TVRDSD S++Q +YGEDG+DVTK LT F L N K L
Sbjct: 410 LTVFYDHTVRDSDGSVVQFIYGEDGVDVTKTSCLT--AFEILAANQK-----------LL 456
Query: 462 KHPLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQP 521
H L H+ KF L K + P+
Sbjct: 457 SHRL----------------------HKDKFINFL----------GGKSSNESSVVLPKA 484
Query: 522 LISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVL 581
L S + A F ++++ S +K TK + +F D++ + + SLA PGE VGV+
Sbjct: 485 LQS--EARAFFENLTKKQKLS-MKLTKAK-------EFMDLLQLRYISSLAQPGEAVGVI 534
Query: 582 AAQSIG 587
A QSIG
Sbjct: 535 AGQSIG 540
>gi|300121000|emb|CBK21382.2| unnamed protein product [Blastocystis hominis]
Length = 1671
Score = 394 bits (1011), Expect = e-106, Method: Compositional matrix adjust.
Identities = 207/441 (46%), Positives = 283/441 (64%), Gaps = 13/441 (2%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
++EA +++ QY KDGSPL GLIQDHV SG L+ RDTFL R EY LV+ A+
Sbjct: 498 RSEAYNIVSAKYQYTSAKDGSPLRGLIQDHVASGFLLTKRDTFLNRQEYDQLVFTAISGF 557
Query: 73 NTE-----IRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
+ +RTLPP I KP LWTGKQV+S+++INL + +G ++ K +G
Sbjct: 558 DEPASERVVRTLPPAILKPAVLWTGKQVVSSLLINLVGDLPQMTFNG---VAQVNDKAWG 614
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
S Q + + V + GELL G+LDK FG+ Y LVHA+ + +G + LSC
Sbjct: 615 SGQIPPQSPLGEQLVLVEEGELLRGVLDKSTFGAKNYSLVHAIHELYGVDLCSKFLSCFG 674
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIIS 247
++ T Y Q+ GFT + D+++ +E + KR +I+ A +GL +T P + S
Sbjct: 675 RVVTSYFQKRGFTCSMEDLVLEKEAEDKRRALIDSALEKAVSGMEQYMGL--ETTPSM-S 731
Query: 248 SQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKG 307
+ + A S + I + S++ ++++ I +VCLP GL PFP N+ M+ SGAKG
Sbjct: 732 LEARRAAVSDELRQRFISSRGASIVSQISSEIFKVCLPHGLRVPFPNNSFSCMIISGAKG 791
Query: 308 STVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEF 367
S VN Q+SC LGQ ELEG+R MMV+G+TLPSF Y+ PRAGG+V RF+TGI+PQE+
Sbjct: 792 SNVNQTQVSCALGQQELEGRRVPMMVNGKTLPSFRAYDPMPRAGGWVSDRFLTGIRPQEY 851
Query: 368 FFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL 427
+FHCMAGREGL+DTAVKTSRSGYLQRC++KHLE LTV YD +VR+SD ++IQ+LYG+DG+
Sbjct: 852 YFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEDLTVQYDYSVRNSDGAVIQLLYGDDGV 911
Query: 428 DVTKRQYLTDK--QFSFLEDN 446
DV K +YLT K Q FL N
Sbjct: 912 DVGKVKYLTGKRAQLDFLAQN 932
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 125/235 (53%), Gaps = 21/235 (8%)
Query: 519 PQPLISTFQPDAHFGSISENLADSV----VKYTKGRTDASHVDKFYD-----MIFY-KNL 568
P P+ + G+++E D + Y K R + + D M+F+ K +
Sbjct: 1055 PDPVNWQLNICRNIGAVNEKYQDQLEAYLAAYEKAREAGNGLPGGVDRGGLEMLFWMKYM 1114
Query: 569 LSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKT 628
SLA PG++VGV+A QSIGEP+TQMTLNTFH AG G +NVTLGIPRLREI+M A K+I T
Sbjct: 1115 RSLAEPGDSVGVIAGQSIGEPATQMTLNTFHLAGHGAVNVTLGIPRLREIIMQAAKSIGT 1174
Query: 629 PSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEK---VKIKEWLE-----ISPEPHM- 679
P M +P LP E+ ANRL K + RI + +LE ++ ++L + P++
Sbjct: 1175 PMMTLPLLPS--ATEEAANRLKKKLHRIGLDQLLEPECYFRVVDYLTNTTYGATYTPYVR 1232
Query: 680 NYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIE 734
Y++ +PA + + + ++ +FL L + K + K N+E
Sbjct: 1233 KYELNMNLLPADVIQKAYGLDMDTVLHVIMEEFLPLLGTLMTKDVRRAAKVSNLE 1287
Score = 126 bits (317), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/138 (43%), Positives = 87/138 (63%)
Query: 869 LKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 928
L+T+G+N + ++ L+D+NK+Y NDI + TYG+EAA I+ E+ VF VY I VD
Sbjct: 1511 LQTEGVNFPTVWAHQGLVDVNKIYSNDIWQILETYGVEAARTAIVTEITRVFDVYSISVD 1570
Query: 929 PRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPS 988
PRHL+L+ADYMT G Y MNR G+ S Q+M+FE + A + G DS+ +PS
Sbjct: 1571 PRHLTLIADYMTQDGAYRPMNRAGMENIESPFQQMSFETTTHFLNNAILNGTSDSMVSPS 1630
Query: 989 ARVMLGQECRQGTGLFQL 1006
A + G+ + GTG F++
Sbjct: 1631 ACIATGKAIKAGTGCFKV 1648
>gi|45181571|gb|AAS55436.1| RNA polymerase I largest subunit [Podocarpus macrophyllus]
Length = 550
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 248/607 (40%), Positives = 339/607 (55%), Gaps = 97/607 (15%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA ++N + QY+VP G P+ GLIQDH++S A L+ RDTFLT+ EY +LVY A C+
Sbjct: 12 RAEAYNIVNANEQYIVPTSGDPIRGLIQDHIVSAALLTKRDTFLTKEEYQHLVYNA-CVS 70
Query: 73 NTE--------------------IRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR 112
++ +LPPTIW+P PLWTGKQV++TV+ ++T K R
Sbjct: 71 SSAPVYQRGMSSPKIGIVEDDLVFLSLPPTIWRPKPLWTGKQVITTVLNHIT---KGRPR 127
Query: 113 HGELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWD 172
SG + +G L V I++ EL+ G++DK QFG +YGLVH V +
Sbjct: 128 FTMNKSGKVPGDYWGRNSGEL-------DVLIQNNELVCGVVDKAQFG--KYGLVHVVQE 178
Query: 173 THGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAAC 232
GA A LLS ++LFT YLQ GFT G+ D+L+ + + R KI+ K+ +LG +
Sbjct: 179 LFGANVAGHLLSIFSRLFTGYLQMHGFTCGIADLLLIPQAEDGREKILEKSEKLGDKVHL 238
Query: 233 NALG--------LPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCL 284
LG L L D E + +A + A++DR S L+++T+++N
Sbjct: 239 QFLGGDQDRTDLLNLGEDIEKVLRNKGDAAS------ARLDRLMSSALNRITSDVNNSIF 292
Query: 285 PEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPY 344
P+GL++ FP+N L M SGAKG VN QIS LLGQ ELEGKR M+SG+TLP F P+
Sbjct: 293 PKGLLKSFPSNCLSLMTTSGAKGGLVNFTQISSLLGQQELEGKRVPRMISGKTLPCFPPW 352
Query: 345 EVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTV 404
+ RAGGF+ RF+TG++PQE++FHCMAGR+GL+DTAVKTSRSGYLQRCL+K+LE L V
Sbjct: 353 DTRARAGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAVKTSRSGYLQRCLIKNLECLKV 412
Query: 405 HYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHP 464
+YD TVRDSD S+IQ YGEDG+DV K LT QF L N K+++ L KH
Sbjct: 413 YYDYTVRDSDGSIIQFHYGEDGVDVMKTSCLT--QFDILATN------QKLVIQRLGKHQ 464
Query: 465 LS-LALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLI 523
L +SS N +T DL E +FKA
Sbjct: 465 FDELNCKSSSKERSSISEN---------YTSDLPEAL-------------RFKA------ 496
Query: 524 STFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAA 583
++ +++ K + + F +++ K + SLA PGE VGV+A
Sbjct: 497 -------------QDFINNLSKQKRQILELEDPSNFLNLMRLKYVTSLAQPGEPVGVIAG 543
Query: 584 QSIGEPS 590
QSIGEPS
Sbjct: 544 QSIGEPS 550
>gi|45181573|gb|AAS55437.1| RNA polymerase I largest subunit [Taxus canadensis]
Length = 545
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 242/610 (39%), Positives = 347/610 (56%), Gaps = 108/610 (17%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
++EA ++N + QY+VP G P+ GLIQDH++S L+ RDTFL + +Y +LVY A C+
Sbjct: 12 RSEAYNIVNANEQYIVPTSGDPIRGLIQDHIVSATLLTKRDTFLIKEDYQHLVYNA-CVS 70
Query: 73 NT-----EIRTLP---------------PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR 112
N+ ++LP PTIWKP PLWTGKQV++TV+ ++T + +
Sbjct: 71 NSPPVFQRGKSLPKVGIIEDDYGFLSVAPTIWKPEPLWTGKQVITTVLNHVT--GETVFY 128
Query: 113 HGELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWD 172
H ++ + +G D V I++ E + GI+DK QFG +YGLVH V +
Sbjct: 129 HEQIW-------EVPGDYWGKSSGELD--VVIQNNEHICGIIDKAQFG--KYGLVHIVQE 177
Query: 173 THGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAAC 232
+GA A LLS ++LFT YLQ GFT G+ D+L++ + +R KI+ K+ LG +
Sbjct: 178 LYGANVAGHLLSIFSRLFTGYLQMHGFTCGIADLLLKPGAEVRRQKILAKSEDLGEKVHL 237
Query: 233 NALG-----LPLDTDPE-IISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPE 286
LG + + D E ++ S+ + A A++DR S L+++T+++N P+
Sbjct: 238 QFLGGNEDLVHMGEDIEKLLRSKGETA-------SARLDRLMSSALNRITSDVNNSLFPK 290
Query: 287 GLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEV 346
GL++PFP+N L M +GAKG V+ QIS LLGQ ELEGKR MVSG+TLP FLP++
Sbjct: 291 GLLKPFPSNCLSLMTTTGAKGGLVDFTQISSLLGQQELEGKRVPRMVSGKTLPCFLPWDT 350
Query: 347 SPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHY 406
RAGGF+ RF+TG++PQE++FHCMAGR+GL+DTAVKTSRSGYLQRCL+K+LE L V+Y
Sbjct: 351 RARAGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAVKTSRSGYLQRCLIKNLECLKVYY 410
Query: 407 DMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLS 466
D T+RDSD S+IQ YGEDG+DV K LT QF L N K
Sbjct: 411 DYTIRDSDGSIIQFYYGEDGVDVMKTSCLT--QFDVLAANQK------------------ 450
Query: 467 LALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTF 526
L + GK +Q+ +L ++ KK L+S
Sbjct: 451 ------LVIQRLGK-----------------DQFDELIHQSSKK--------GNSLVS-- 477
Query: 527 QPDAHFGSISENLADSVVKY----TKGRTDASHVDK--FYDMIFYKNLLSLANPGENVGV 580
D+H + E L + + +K + + ++D+ F +++ K + SLA PGE VGV
Sbjct: 478 --DSHTNDLPEALKKKALGFIDSLSKEKRQSLNLDRRNFLNLMRLKYITSLAQPGEPVGV 535
Query: 581 LAAQSIGEPS 590
+A QSIGEPS
Sbjct: 536 IAGQSIGEPS 545
>gi|214028088|gb|ACJ63313.1| RNA polymerase I large subunit [Drimys winteri]
Length = 539
Score = 387 bits (995), Expect = e-104, Method: Compositional matrix adjust.
Identities = 235/603 (38%), Positives = 331/603 (54%), Gaps = 98/603 (16%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA---- 68
+AEA + N + QY+VP G P+ GLIQDH+IS L+ +DTFLTR EY L+Y +
Sbjct: 10 RAEAMNIANANKQYIVPTSGDPIRGLIQDHIISAVLLTKKDTFLTRDEYHQLLYSSGVTA 69
Query: 69 -------------LCILNTE--IRTLPPTIWKPMPLWTGKQVLSTVIINLT-PKDKVIIR 112
+ +++E I+ + P IWKP PLWTGKQV++T++ ++T + ++
Sbjct: 70 AAPRSFIGKFGKTVSTISSEDDIKPVLPAIWKPRPLWTGKQVITTILNHITRGRPPFTVK 129
Query: 113 HGELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWD 172
+G + ++ FG + + I+ EL+ G++DK QFG +YGLVH V +
Sbjct: 130 K----TGRIPREYFGINN-------GEIKLLIQKNELVHGVIDKAQFG--KYGLVHTVQE 176
Query: 173 THGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAAC 232
+G++ A LLS ++LFTV+LQ GFT GV D+L+ Q+ DR+RT + A ++G
Sbjct: 177 LYGSDTAGILLSVFSRLFTVFLQMHGFTCGVDDLLIFQQSDRERTMKLGNAEKIGEHVHS 236
Query: 233 NALGLP-LDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCLPEGLIE 290
+G DP+ + +++ S A +DR S L+++T+ +N P GL +
Sbjct: 237 QFVGAKDGGIDPKTLQMEIERVLRSNGDSAIASLDRLMSSALNRLTSEVNNRLFPRGLFK 296
Query: 291 PFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRA 350
PFP N L M +GAKG VN QIS LLGQ ELEGKR MVSG+TLP F P++ + RA
Sbjct: 297 PFPRNCLSLMTTTGAKGGLVNFTQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDCASRA 356
Query: 351 GGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTV 410
GGF+ RF++G++PQE++FHCMAGREGL+DTA+KTSRSGYLQRCL+K+LE L V YD TV
Sbjct: 357 GGFISDRFLSGLRPQEYYFHCMAGREGLVDTAIKTSRSGYLQRCLIKNLESLKVCYDHTV 416
Query: 411 RDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALL 470
RD+D S+IQ YGEDG+DV K ++ +F L N ++L
Sbjct: 417 RDADGSIIQFCYGEDGVDVHKTSFIA--EFKMLAAN------QNIVLE------------ 456
Query: 471 LLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDA 530
K SG QL+D K K P L
Sbjct: 457 -----KLSG----------------------QLEDAHLSKSDAYIKELPNAL-------- 481
Query: 531 HFGSISENLADSVVKYTKGRTDASHVDK---FYDMIFYKNLLSLANPGENVGVLAAQSIG 587
D TK + + H+ K F +++ K L SLA PGE VGV+AAQS+G
Sbjct: 482 -----ERKAKDFFCSLTKKKRHSLHLRKQKNFMNLMKLKYLSSLAQPGEAVGVIAAQSVG 536
Query: 588 EPS 590
EPS
Sbjct: 537 EPS 539
>gi|45181587|gb|AAS55444.1| RNA polymerase I largest subunit [Zamia muricata]
Length = 551
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 242/602 (40%), Positives = 338/602 (56%), Gaps = 86/602 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA ++N + QY+VP G P+ GLIQDHV+S L+ RDTFLT+ +Y +LVY A C+
Sbjct: 12 RAEAYNIVNANEQYIVPTSGDPIRGLIQDHVVSATLLTKRDTFLTKDDYQHLVYSA-CVS 70
Query: 73 NT--------------------EIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR 112
T +LPP IWKP PLWTGKQV++TV+ +T
Sbjct: 71 TTPPVFQRAKSCPKIGIVKDDYSFLSLPPAIWKPQPLWTGKQVITTVLNYVTKGHPPFTM 130
Query: 113 HGELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWD 172
+G + +G + G + AV I++ EL+ G++DK QFG +YGLVH V +
Sbjct: 131 KK---AGKVPGDYWGKSS-GELKAV------IQNNELICGVIDKAQFG--KYGLVHTVQE 178
Query: 173 THGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAAC 232
+GA A LLS ++LFT YLQ GFT GV D+L+ + + R K + K+ LG
Sbjct: 179 LYGAGTAGHLLSVFSRLFTGYLQMHGFTCGVADLLLVPQAEDDREKKLEKSETLGDSVHS 238
Query: 233 NALGLPLDT-DPEIISSQLQEAYASIPQF-RAQIDRQYKSLLDKVTNNINQVCLPEGLIE 290
+G D + E + +++ S + +++DR S L+++T+++N P+GL++
Sbjct: 239 QFIGADGDQREFEGMEEDIEKHLRSKGEVASSRLDRLMSSALNRLTSDVNNGLFPKGLLK 298
Query: 291 PFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRA 350
PFP+N L M +GAKG VN QIS LLGQ ELEGKR MVSG+TLP F P++ RA
Sbjct: 299 PFPSNCLSLMTMTGAKGGLVNFTQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDSRARA 358
Query: 351 GGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTV 410
GGF+ RF+TG++PQE++FHCMAGR+GL+DTA+KTSRSGYLQRCL+K+LE L VHYD TV
Sbjct: 359 GGFIGDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCLIKNLECLKVHYDYTV 418
Query: 411 RDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALL 470
RDSD S+IQ YGEDGLDV K LT +F L N + + S K+
Sbjct: 419 RDSDGSVIQFTYGEDGLDVMKTSCLT--EFKVLAAN-RELVSQKL--------------- 460
Query: 471 LLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKAR--KKYRKKFKACPQPLISTFQP 528
G+ F M+ Q+ +K R Y ++ + + TF
Sbjct: 461 --------GESKF----------METNCQYSNYSNKERPLNGYMEELPEAFENKLQTF-- 500
Query: 529 DAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGE 588
F +S+ S+ + R F +++ K + SLA PGE+VGV+A QSIGE
Sbjct: 501 ---FNGLSKQKRKSLKLRKQSR--------FLNLMRLKYISSLAQPGESVGVIAGQSIGE 549
Query: 589 PS 590
PS
Sbjct: 550 PS 551
>gi|298707844|emb|CBJ30250.1| RNA polymerase 1-4 RNA polymerase I large subunit [Ectocarpus
siliculosus]
Length = 1234
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 211/475 (44%), Positives = 282/475 (59%), Gaps = 47/475 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA+ L QYLVP +G PL GLIQDHV +G K+ +D F TR EY L+YQAL L
Sbjct: 661 KAEANLLAFTDEQYLVPTNGKPLRGLIQDHVDAGVKMCSKDCFFTRGEYQQLLYQALSGL 720
Query: 73 --------NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKK 124
+ +I TLPP I KP WTGKQV+ST++ +LT + G+ + K
Sbjct: 721 PGLEIVPPSDDITTLPPAILKPQQRWTGKQVMSTILRHLTKGLPQLNLDGKSRT---PKV 777
Query: 125 QFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLS 184
FG + V + R GELL G+LDK FGS+++GLVHAV + +G+ A LL+
Sbjct: 778 AFGEAEQEHV-------IVFREGELLQGVLDKGAFGSSEFGLVHAVHEVYGSTAAGKLLT 830
Query: 185 CLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEA------ACNALGLP 238
L ++ T++LQ G T G+ D+ + + R +IINK+ +G + A G
Sbjct: 831 ALGRVLTIFLQSSGHTCGIEDLTLTGRAEGNRREIINKSLGIGQRSMRELVETVAAEGQD 890
Query: 239 L--------------DTDPEIISSQLQEAYASIPQFR---------AQIDRQYKSLLDKV 275
DT ++ ++++ F A+IDR +S L V
Sbjct: 891 AKAIANGAAAEEGHEDTSKALVEAEVESIRQKTASFLLGEDRDTRLAEIDRHMQSALAPV 950
Query: 276 TNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSG 335
+++I + CLP G +PFP N MV +GAKGS VN Q+SC LGQ LEG+R +MVSG
Sbjct: 951 SSDIIKACLPGGQAKPFPHNCFSLMVLTGAKGSMVNHSQVSCALGQQALEGRRVPVMVSG 1010
Query: 336 RTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCL 395
++LPSF +E SPRA GF+ RF+TGI+PQE++FHCMAGREGL+DTAVKTSRSGYLQRCL
Sbjct: 1011 KSLPSFQAFEPSPRANGFITDRFLTGIRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL 1070
Query: 396 VKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWI 450
VKHLE L V YD TVRD + + Q LYGEDG+D T+ +YL+ KQ FL N + +
Sbjct: 1071 VKHLEELKVGYDNTVRDGEGCVHQFLYGEDGVDTTQTKYLSSKQLGFLAQNYQAL 1125
>gi|290990590|ref|XP_002677919.1| DNA-directed RNA polymerase subunit A [Naegleria gruberi]
gi|284091529|gb|EFC45175.1| DNA-directed RNA polymerase subunit A [Naegleria gruberi]
Length = 1755
Score = 381 bits (978), Expect = e-102, Method: Compositional matrix adjust.
Identities = 252/713 (35%), Positives = 369/713 (51%), Gaps = 93/713 (13%)
Query: 2 DGWTQNASHFLK-----AEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA HF++ +EA LM+ + P G PL GLIQDHV S L+++D FL
Sbjct: 713 DGDEMNA-HFVQNPIAQSEARQLMDAQLSFCTPTSGEPLRGLIQDHVSSAVLLTMKDNFL 771
Query: 57 TRAEYMNLVYQA-LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGE 115
+R +Y ++ A + +N IR+ P+I KP PLWTGKQV+++++ ++ K+ G
Sbjct: 772 SREDYQEILLSANIFDVNEVIRSEIPSILKPTPLWTGKQVITSLLKHVAKKN---TPAGA 828
Query: 116 LLSGI-LDKKQFGSTQYGLVHAVWDTH-----VTIRHGELLSGILDKKQFGSTQYGLVHA 169
+ G+ LD K + VW H V IR ELL+GI DK Q GS++YG++HA
Sbjct: 829 PVFGVNLDCKT------KVKGTVWGAHNEEGMVIIRDNELLTGIFDKSQVGSSKYGILHA 882
Query: 170 VWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTE 229
+ +G + L+SCL+++ T YL + G+ D L+ + + R + + +
Sbjct: 883 FDECYGNNASNMLISCLSRMLTFYLHYFAISCGIDDCLLSKSAEANRIETLKNSNEACHH 942
Query: 230 AACNALGLPLDTDPE------------------IISSQLQEAYASIPQFRAQIDRQYKSL 271
A + GLP D +S Q E + ++D K
Sbjct: 943 ATASYCGLPKKKDASQYDHDKVKEFLAKHMLNPTVSKQTGEIINE--KIVRKLDSTVKKS 1000
Query: 272 LDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAM 331
++K T +P G + FP N L M E+GAKGS VN+ QI+ LG E EGKR +
Sbjct: 1001 INKFTTKAINDSIPMGQYKAFPYNMLSLMTETGAKGSMVNSSQIAVCLGLQEFEGKRVNV 1060
Query: 332 MV-SGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGY 390
V SG+TLPSF ++ + A G+V RF+TGI+PQEFFFHCMAGR+GLIDTAVKT+RSGY
Sbjct: 1061 QVKSGKTLPSFDSFDSNNIANGYVASRFLTGIKPQEFFFHCMAGRDGLIDTAVKTARSGY 1120
Query: 391 LQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWI 450
LQRCL+KHLE L+V YD TVR+ + +++Q YG D +D K Y+T QF F+ N
Sbjct: 1121 LQRCLIKHLEDLSVQYDGTVRNGNKTVVQFSYGGDHIDPIKTGYMT--QFDFMRMNQDL- 1177
Query: 451 CSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKK 510
L +++ A+ ++T D+ E + +
Sbjct: 1178 --------LSQRYNEESAI---------------------QYTKDVKEWQEKTKNATSTI 1208
Query: 511 YRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKG--RTDASHVDKFYD------M 562
Y+ F + P + G +S+ + KY + T S K +D +
Sbjct: 1209 YKNDF-------VQIEDPWNYLGGVSDAYDKKLKKYIEATKTTTLSDTKKKFDPERIKTL 1261
Query: 563 IFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMA 622
K L SL N + VG++A QSIGEPSTQMTLNTFHFAG +VT+GIPRL E+LM
Sbjct: 1262 AHLKYLRSLVNASDPVGIIAGQSIGEPSTQMTLNTFHFAGLDMAHVTVGIPRLVELLMRG 1321
Query: 623 TKAIKTPSMEIPFLPDMPKLE-KKANRLAKSMTRITMADVLEKVKIKEWLEIS 674
T + T M +P + + + +K + A S++++ VL + I+E + S
Sbjct: 1322 TTRVLT--MNVPVKKECAQYQVEKIYQYADSISKLPFFRVLTNMDIQEQFKFS 1372
>gi|323450843|gb|EGB06722.1| hypothetical protein AURANDRAFT_65384 [Aureococcus anophagefferens]
Length = 1610
Score = 380 bits (975), Expect = e-102, Method: Compositional matrix adjust.
Identities = 255/785 (32%), Positives = 389/785 (49%), Gaps = 109/785 (13%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S +AEA + QY+VP DG PL GLIQDHV KLS+ D+F+ R + + Y+
Sbjct: 526 SELCRAEAKLIAATHEQYVVPTDGKPLRGLIQDHVDCAVKLSMADSFIPRDMFCQMAYET 585
Query: 69 LCIL-------NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGIL 121
++ + I L P I KP L+TG+Q++S V+ ++T + + +
Sbjct: 586 CRVVVGDASRVDVRIAGLRPAILKPRVLYTGRQLISLVLAHVTRRFAASAGRDDFVQEFE 645
Query: 122 DKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAIS 181
K + + G + + V +R G +L G+LDK G++ GLVHA+++ +GA A
Sbjct: 646 GKAKVKAEAIGGFAGLDEQLVYVRKGRVLRGVLDKATVGASANGLVHAIYELYGAHAAAV 705
Query: 182 LLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL--P 238
LL ++++FT+YL+ V G T G+ D+++ ++ ++ R ++ KA + G +A L P
Sbjct: 706 LLDAISRMFTLYLRYVEGHTCGIGDLVLTEKAEQARAALVLKAEQTGLDALKEFLAARRP 765
Query: 239 LD-TDPEIISS--------QLQEAYASIPQ--FRAQIDRQYKSLLDKVTNNINQVCLPEG 287
DP + ++ Q E A + + A +D + L + I + CLP G
Sbjct: 766 AGVADPTLAAATPRAATLAQRAELAAVLSKDGGGAALDGHMQGALAPAHSAIVKACLPNG 825
Query: 288 LIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVS 347
L FP N+ MV +GAKGS VN Q+SC LGQ LEG+R +M +G+ LP F Y+ S
Sbjct: 826 LATMFPKNSFALMVTTGAKGSIVNQSQVSCALGQQSLEGRRVPLMANGKALPCFEAYDQS 885
Query: 348 PRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYD 407
PRAGGF+ RF+TG++PQE++FHCMAGREGL+DTA D
Sbjct: 886 PRAGGFITDRFLTGVRPQEYYFHCMAGREGLVDTA------------------------D 921
Query: 408 MTVRDSDLSLIQVLYGEDGLDVTKRQYLTD-KQFSFLEDNIKWICSYKV--ILNLLKKHP 464
TVRD++ S++Q LYG+DGLDV K +L+ K+ L DN + S + N
Sbjct: 922 HTVRDAEGSVVQFLYGDDGLDVMKTHFLSGAKELKILGDNHRAGASREGPDAANARAHEA 981
Query: 465 LSLALLL--------LLTFKSSGKPNFIFSPHRTKFTM----------------DLLEQW 500
L +L L + I RT+ + D+ +
Sbjct: 982 LGAEVLAARRGYALEALEVGARVDARQIAGKGRTRADLKGSSWSLATVVRARGGDVYDVK 1041
Query: 501 YQLDDKARKKYRKKFKA----CPQ--------PLISTFQPDAHFGSISENLADSVVKYTK 548
+ D KK + A C + PL + + P FG++S+ L ++++
Sbjct: 1042 FDHDGSVMKKAPRTVAAGEGRCVEVLRLAARQPLNARYAP-WRFGAVSDKL-EALLDDLD 1099
Query: 549 GRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
G S + ++ K SLA PGE VG LAAQS+GEPSTQMTLNTFH AG G NV
Sbjct: 1100 GGDAGSDIRA---AVYGKYARSLAAPGEAVGALAAQSVGEPSTQMTLNTFHLAGHGAGNV 1156
Query: 609 TLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRIT---MADVLEKV 665
TLGIPRLREI+M A+ IKTP + +P + +A A + ++ +AD+ E +
Sbjct: 1157 TLGIPRLREIIMTASDHIKTPQITLPLTSRDDSVMARARTFADGLNKVCLLELADLKEGI 1216
Query: 666 KIKEWLEISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHF--------ERKFLKELE 717
+E + +S + + F ++ D +KI+ HF + ++LE
Sbjct: 1217 ACRERVHLSKNRLLRREYVATF---RLHED------AKIVAHFGPGLVPEETQGLCRKLE 1267
Query: 718 VAIAK 722
A+ K
Sbjct: 1268 AAVRK 1272
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/300 (29%), Positives = 141/300 (47%), Gaps = 23/300 (7%)
Query: 711 KFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRVDVSSDEER 770
KF ++ EV G + +E + D E D +D+E GA A AA GR + +
Sbjct: 1325 KFGRKREVDGYDDDDGGDDDEAVETAMD--ESDSDDEENGGASPAKAAPGRSPAGAKQAP 1382
Query: 771 DEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNTSNIGERFKIEFRDSTNVFVKDV 830
+ A K V F+E D R++ FK+ +
Sbjct: 1383 KKARAAVGSKTVEVGCTCHFDELRD--RLA--------------FKVVVDVGAGAPRCSL 1426
Query: 831 VNQHNIVHKYSYDKKNHMWCKLLFLPSNLFEEKESKHLLKTDGINVNFISQ----YRHLL 886
+ + ++ + + +P + + E+ ++ +G N I + + +
Sbjct: 1427 ASMVEAACGRTVVREAKGVTRAVLVPDRVVDGAETGGVV-VEGDNFEAIWKETLGFADAV 1485
Query: 887 DLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYV 946
D++ L NDI + TYG+EAA I+REV VF VYGIEV+P HLSL+ADYMT +G Y
Sbjct: 1486 DVDNLESNDISGILRTYGVEAARASIVREVMGVFGVYGIEVEPHHLSLIADYMTFNGAYK 1545
Query: 947 AMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
AMNR + N S +M+FE + + +A+M +SL +PSAR+++GQ GT F +
Sbjct: 1546 AMNRTAMAQNSSPYLQMSFETTADFLAKAAMAEGRESLASPSARIVVGQPVGVGTNHFDV 1605
>gi|325179800|emb|CCA14203.1| DNAdirected RNA polymerase I subunit RPA1 putative [Albugo laibachii
Nc14]
Length = 1800
Score = 377 bits (967), Expect = e-101, Method: Compositional matrix adjust.
Identities = 209/476 (43%), Positives = 282/476 (59%), Gaps = 65/476 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
++EA + QYLVP DGSPL GLIQDHV+ G KL+ RDTFLT+ Y L+Y A +
Sbjct: 633 RSEAYNIAANDHQYLVPTDGSPLRGLIQDHVVCGIKLTQRDTFLTKDMYNQLLYNAWASI 692
Query: 73 ------------NTEIRTLPPTIWKPMPLWTGKQVLSTVI---------INLTPKDKVII 111
I +PP I KP LWTGKQV+++V+ +++T K KV
Sbjct: 693 EGLNLPGMIIDPKQNIEIVPPAILKPKQLWTGKQVITSVLRMLTKGLPPLHMTSKAKV-- 750
Query: 112 RHGELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVW 171
GEL GI +++ V R GELL G+LDK QFG++ +GLVHA +
Sbjct: 751 -KGELY-GIANQEHI---------------VVFRDGELLQGVLDKSQFGASMHGLVHATY 793
Query: 172 DTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAA 231
+ +GA A LL+ L +LFT YLQ VG T V D+ + + +++R+++I K+ G EA
Sbjct: 794 EIYGARIAADLLTALGRLFTCYLQFVGHTCAVEDLTLNVQAEKRRSRLIKKSEIAGEEAC 853
Query: 232 CNALGLP---------------------LDTDPEIISSQLQEAYAS--IPQFRAQIDRQY 268
GL + + ++ S++ + Q R +D
Sbjct: 854 AEFAGLHDLLSAKRTAEKDDRGGKKRRMTNLERAVLRSRMATLFHGRDADQNRKALDAHM 913
Query: 269 KSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKR 328
+ K + I + CLP G +PFP+NN MV +GAKGS VN QISC LGQ LEG+R
Sbjct: 914 MGCVHKFNSEIIKTCLPVGQTKPFPSNNFSMMVLTGAKGSMVNHSQISCGLGQQALEGRR 973
Query: 329 PAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRS 388
++VSGR+LPSF P++ SPRAGG++ RF+TG++PQE++ HCMAGREGL+DTAVKTSRS
Sbjct: 974 VPILVSGRSLPSFEPFDPSPRAGGYITDRFLTGLRPQEYYHHCMAGREGLVDTAVKTSRS 1033
Query: 389 GYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLT--DKQFSF 442
GYLQRCLVKHLE L V YD TVRDS+ ++IQ LYGEDG+D + LT D+QF+F
Sbjct: 1034 GYLQRCLVKHLEDLQVAYDHTVRDSEGNVIQFLYGEDGVDPVRGAMLTGKDEQFTF 1089
Score = 228 bits (580), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 166/564 (29%), Positives = 271/564 (48%), Gaps = 79/564 (14%)
Query: 519 PQPLISTFQPDAHFGSISENLAD---------------SVVKYTKGRTD-------ASHV 556
P P++ + H G ISE L + S+ K +K + D H+
Sbjct: 1232 PDPVMHALPLNDHLGLISEQLQEQLERYQARNPSKCLNSIAKDSKQKCDIDTTKMFGKHI 1291
Query: 557 ---DKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIP 613
+ F +++ L SL PGENVGVLAAQSIGEPSTQMTLNTFH AG G NVTLGIP
Sbjct: 1292 IAPEAFQLLVWASYLQSLCAPGENVGVLAAQSIGEPSTQMTLNTFHLAGHGAANVTLGIP 1351
Query: 614 RLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEK----VKIKE 669
RLREI+M A++ + TP M IP D+ + + + + +++++ ++ + + +
Sbjct: 1352 RLREIIMTASEKMSTPMMTIPVRQDVDI--GRCQEVEQHLNQVSLSSLISNEEGAISVTD 1409
Query: 670 WLEISPEPHM---NYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQ 726
S + +Y ++ F R ++ ++ + RKF+ +L +A+ +
Sbjct: 1410 QSSKSENGVLWVRDYIVRIRFHRMKYIRKAFGIRSKQVYEVVGRKFVAKLLSLVARDTKR 1469
Query: 727 GLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEE 786
N++ + + +EDDV D + + + D ++ + +V+ EE
Sbjct: 1470 SASNIS-KFAESVVEDDVGDAHRRKPRDEDDSDDDDNEQGTLRFGKRDEIRGYDEVDAEE 1528
Query: 787 DNDFEEPEDEERMSEREE----DDNTSNIGERFKIEFRDS--TNVFVKDVVNQHNIVHKY 840
D + E R + EE D+ + ++ +D+ ++ KDV+ V +
Sbjct: 1529 DTALRKSEAVVRTLDDEEALTMDEVADEVSGKYDPILKDAFGSSKESKDVLEVPAAVRNH 1588
Query: 841 SY------DKKNHMWCKLLFLPSN--------LFEE------------------------ 862
Y DKK H + LP+N L E+
Sbjct: 1589 PYFMQCQVDKKGHSVELRIRLPTNVKRLLMVPLVEKAADSVLVHHCPGISRCYLIQQHIG 1648
Query: 863 KESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 922
+E + ++T+G+N I ++ +L +N+L NDI+ + T+G+EAA I +++ VF V
Sbjct: 1649 EEERPCIQTEGLNFQQIWEFGDILSVNQLMTNDIYQVLKTFGVEAARASISKQINEVFGV 1708
Query: 923 YGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGRED 982
YGI VDPRHLSL+ADYMT G Y+ +NR G+ S Q++TFE ++ + A++ D
Sbjct: 1709 YGISVDPRHLSLLADYMTAKGGYMPLNRTGMVNKASSFQQITFETSMKFLTDAALNRLSD 1768
Query: 983 SLRAPSARVMLGQECRQGTGLFQL 1006
L +PS R++LG R GTG F L
Sbjct: 1769 QLVSPSGRLVLGLSPRVGTGSFSL 1792
>gi|45181585|gb|AAS55443.1| RNA polymerase I largest subunit [Cycas revoluta]
Length = 547
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 211/462 (45%), Positives = 282/462 (61%), Gaps = 41/462 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA ++N + QY+VP G P+ GLIQDHV S L+ RDTFLT+ +Y +LVY A C+
Sbjct: 12 RAEAYNIVNANEQYIVPTSGDPIRGLIQDHVASATLLTKRDTFLTKDDYQHLVYSA-CVS 70
Query: 73 NTE--------------------IRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDK--VI 110
T +LPP IWKP PLWTGKQV+ T ++N +
Sbjct: 71 TTAPVFQRGKSCPKIGIVKDDHTFLSLPPAIWKPQPLWTGKQVI-TALLNYVTRGSPPFT 129
Query: 111 IRHGELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAV 170
++ + G K G + V I++ EL+ G+LDK QFG +YGLVH V
Sbjct: 130 MKKAGRVPGDYWGKSSG-----------ELKVIIQNNELICGVLDKAQFG--KYGLVHIV 176
Query: 171 WDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEA 230
+ +GA+ A LLS ++LFT YLQ GFT GV D+L+ + + R K + KA LG
Sbjct: 177 QELYGADAAGHLLSVFSRLFTGYLQMHGFTCGVADLLLVPQAEDYREKKLGKAEMLGDTV 236
Query: 231 ACNALGLPLDT-DPEIISSQLQEAYASIPQFRA-QIDRQYKSLLDKVTNNINQVCLPEGL 288
+G+ D D E + +++ + + ++DR S L++VT+ +N V P+GL
Sbjct: 237 HSQFIGVDGDCIDLEQMEGDIEKHLRGKGEVASNRLDRLMSSALNRVTSEVNNVLFPKGL 296
Query: 289 IEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSP 348
++PFP+N L M +GAKG VN QIS LLGQ ELEGKR MVSG+TLP F P++
Sbjct: 297 LKPFPSNCLSLMTVTGAKGGLVNFTQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDSRA 356
Query: 349 RAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDM 408
RAGGF+ RF+TG++PQE++FHCMAGR+GL+DTA+KTSRSGYLQRCL+K+LE L VHYD
Sbjct: 357 RAGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCLIKNLECLKVHYDY 416
Query: 409 TVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWI 450
TVRDSD S+IQ YGEDGLDV K LT +F L N K +
Sbjct: 417 TVRDSDGSVIQFTYGEDGLDVMKTSCLT--EFKVLAANQKLV 456
>gi|348688967|gb|EGZ28781.1| hypothetical protein PHYSODRAFT_322406 [Phytophthora sojae]
Length = 1813
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 214/483 (44%), Positives = 285/483 (59%), Gaps = 57/483 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALC-- 70
+AEA + +QY+VP DGSPL GLIQDHV SG KL+ RDTFLT+ YM L+Y A
Sbjct: 637 RAEAYNIACNDNQYIVPTDGSPLRGLIQDHVDSGVKLTQRDTFLTKDMYMQLLYNAWASM 696
Query: 71 ----ILNTEIRTLPPTIWKPMPLWTGKQVLSTVI---------INLTPKDKVIIRHGELL 117
+ I T+PP I KP PLWTGKQV+++V+ +NL K K+ G+L
Sbjct: 697 EDAGVEKAHIETVPPAILKPQPLWTGKQVITSVLKLLTKGLPPLNLDSKAKI---KGDL- 752
Query: 118 SGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAE 177
+GS + V IR GELL G+LDK QFG++ YG+VHA ++ +GA
Sbjct: 753 --------YGSANNEHI-------VIIRDGELLQGVLDKSQFGASMYGMVHACYEVYGAR 797
Query: 178 HAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL 237
A LS L +LFT YLQ G T + D+ + + +++R K++ + LG EA GL
Sbjct: 798 IAADFLSALGRLFTCYLQFAGHTCAMEDLTLNKPAEKRRRKLVEDSEVLGEEAYAEFAGL 857
Query: 238 PLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLL---DKVTN----------------- 277
+ + S + + R QI + ++LL D N
Sbjct: 858 TELLEKKRASEKDGKKRRMNEGERVQIRERMRTLLSGPDAENNAKALDAHMMGCVHGSNS 917
Query: 278 NINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRT 337
+I + CLP G + FP NN MV +GAKGS VN QI+C LGQ LEG+R ++ SGR+
Sbjct: 918 DIIKTCLPSGQSKAFPKNNFSLMVLTGAKGSMVNHSQITCGLGQQALEGRRVPILCSGRS 977
Query: 338 LPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVK 397
LPSF P++ +PRAGG+V RF+TG++PQE++ HCMAGREGL+DTAVKTSRSGYLQRCL+K
Sbjct: 978 LPSFEPFDPAPRAGGYVTDRFLTGLRPQEYYHHCMAGREGLVDTAVKTSRSGYLQRCLIK 1037
Query: 398 HLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLT--DKQFSFLEDNIKWICSYKV 455
HLE L V YD TVR+SD +IQ LYGEDG+D + L+ D QF F N + I S+K
Sbjct: 1038 HLEDLQVGYDHTVRNSDGGVIQFLYGEDGIDPVQSAMLSGKDAQFDFQAMNHRSI-SHKY 1096
Query: 456 ILN 458
+N
Sbjct: 1097 GIN 1099
Score = 135 bits (339), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/146 (45%), Positives = 96/146 (65%)
Query: 861 EEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 920
E +E K ++T+G+N I + +LD+N L NDI+ + TYG+EAA I +++ +VF
Sbjct: 1662 EAQEEKPCVQTEGLNFQEIWGFDDILDVNNLATNDIYQVLHTYGVEAARASISKQIMDVF 1721
Query: 921 AVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGR 980
VYGI VDPRHLSL+ADYMT G Y+ +NR G+ S +Q++TFE ++ + QA+M G
Sbjct: 1722 GVYGISVDPRHLSLLADYMTAQGGYMPLNRMGMNNKGSSLQQITFETSMKFLSQAAMGGL 1781
Query: 981 EDSLRAPSARVMLGQECRQGTGLFQL 1006
D L + SAR++ GQ R GTG F L
Sbjct: 1782 VDKLESSSARLVFGQPPRVGTGSFSL 1807
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 89/307 (28%), Positives = 142/307 (46%), Gaps = 54/307 (17%)
Query: 520 QPLISTFQPDAHFGSISENLADSVVKYTK-----------------------------GR 550
+P++ + H G ISE + D + Y K G
Sbjct: 1227 EPVMQSLPLSEHVGLISERIQDKLRNYNKRNPSSCLELHLKKKKKSKKSKKSKRAADDGE 1286
Query: 551 TD-----ASHV---DKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAG 602
D + HV D F +++ L S+ PGENVG+LAAQ IGEPSTQMTLNTFH AG
Sbjct: 1287 IDREVMQSKHVVSPDAFQLLVWVNYLRSMCAPGENVGILAAQGIGEPSTQMTLNTFHLAG 1346
Query: 603 RGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVL 662
G NVTLGIPRLREI+M A++ + TP M IP D+ +A + + + ++ +++++
Sbjct: 1347 HGAANVTLGIPRLREIIMTASQKMSTPMMTIPLRDDVE--SSRAQEVEQRLNQVALSELI 1404
Query: 663 EK---VKIKEWLEISPEPHM---NYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKEL 716
V++K+ S + +YQ++ F + + ++ + R F+ +L
Sbjct: 1405 NNTNGVRVKDEFHSSENGILWVRDYQIRLTFFQLKEIKRVFGLSADQVFNSVGRGFVGKL 1464
Query: 717 EVAIAKR---------AAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRVDVSSD 767
I++ A N N+ S ++ + +DD+ + +G R +V
Sbjct: 1465 LTLISREMKKSGVTVSATAEKNNFNVPSSSERKKKSDDDDDDDDEQGTLRFGSRGEVQGY 1524
Query: 768 EERDEED 774
E DEED
Sbjct: 1525 GEMDEED 1531
>gi|214028092|gb|ACJ63315.1| RNA polymerase I large subunit [Liriodendron tulipifera]
Length = 558
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 209/475 (44%), Positives = 292/475 (61%), Gaps = 44/475 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVY------ 66
+AEA + N + QY+VP G+P+ GLIQDH++S L+ +DTFLTR EY L+Y
Sbjct: 10 RAEAIEIANANKQYVVPTSGAPIRGLIQDHIVSAVLLTKKDTFLTRDEYHMLLYASGVST 69
Query: 67 -----------QALCILNT--EIRTLPPTIWKPMPLWTGKQVLSTVIINLT--------P 105
Q +C L++ EI+ LPP IWKP PLWTGKQV++T++ ++T
Sbjct: 70 AASGSYVGKFGQKVCTLSSDDEIQPLPPVIWKPKPLWTGKQVITTILNHITRGHPPFTVK 129
Query: 106 KDKVI--------IRHGELLSGILDKKQFGSTQYGLVHAVWDTH-VTIRHGELLSGILDK 156
K+ I + G ++ G+ KK+ + + H + I EL+ G++DK
Sbjct: 130 KEGKIEDGCFYSEWKEGNMVDGV--KKEIVEGCFKHCKSKGKKHKLIIWKNELVHGVIDK 187
Query: 157 KQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKR 216
QF +YG+VH V + +G+ A LLS L++LFTV+LQ GFT GV D+L+ Q+ D KR
Sbjct: 188 NQFA--KYGMVHTVQELYGSNTAGILLSVLSRLFTVFLQMHGFTCGVDDLLIVQQSDLKR 245
Query: 217 TKIINKARRLGTEAACNALGLPLDTDPEIISSQLQEAYASIPQFRAQ-IDRQYKSLLDKV 275
I+ K +GT +G + T+P + +++ A S + +D L+ V
Sbjct: 246 QMILEKHENIGTNVHSKLIGAKI-TEPMKLQMEIERAIRSHGESAVTYLDMLMSHELNGV 304
Query: 276 TNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSG 335
T IN +P GL++PFP N L M +GAKGS VN QIS LLGQ +LEGKR MVSG
Sbjct: 305 TTEINDAIIPSGLLKPFPRNCLSLMTTTGAKGSQVNFTQISSLLGQQQLEGKRVPRMVSG 364
Query: 336 RTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCL 395
+TLP F P++ + RAGGF+ RF+TG++PQE++FHCMAGREGL+DTA+KTSRSGYLQRCL
Sbjct: 365 KTLPCFPPWDTAARAGGFIGDRFLTGLRPQEYYFHCMAGREGLVDTAIKTSRSGYLQRCL 424
Query: 396 VKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWI 450
+K+LE L V YD TVRD+D S++Q YGEDG+DV K ++T +F L N + I
Sbjct: 425 IKNLECLRVCYDHTVRDADGSVVQFCYGEDGVDVHKTSFIT--EFKSLAQNQRII 477
>gi|422294084|gb|EKU21384.1| DNA-directed RNA polymerase I subunit RPA1 [Nannochloropsis gaditana
CCMP526]
Length = 1873
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 215/501 (42%), Positives = 297/501 (59%), Gaps = 59/501 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA + QYL P +G PL GLIQDHV SG KL+ +D FL+RA++ ++++ L L
Sbjct: 636 RAEAETIACTDEQYLAPTNGKPLRGLIQDHVGSGVKLTGKDCFLSRADFQHILFCTLSGL 695
Query: 73 NTEIRTLPP---------TIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGI-LD 122
+ +PP IWKP LWTGKQ++S ++ +L+ E L + LD
Sbjct: 696 PG-VEVVPPYGHIYMPAPAIWKPQELWTGKQMISVLLQHLS----------EGLPPLNLD 744
Query: 123 -KKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAIS 181
K + + +G+ + V +R G+L+ G+LDK FG+++ GLVH V++ +G A
Sbjct: 745 FKAKTPAVAFGVDQE--EHEVVVRGGDLIRGVLDKAAFGASEGGLVHGVYEFYGPRFAGR 802
Query: 182 LLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAA-CNALGLPLD 240
LL+ L +LFTVYLQ G T GV D+++ + +++R +I +A RLG A C G +
Sbjct: 803 LLTALGRLFTVYLQFAGHTCGVEDLVLSRAAEQRRRALITRAGRLGGLAMYCYTSGTAFE 862
Query: 241 TDPEI----ISSQLQEAYASIPQFRAQ---------------------------IDRQYK 269
P S Q ++ AS A ID +
Sbjct: 863 PPPLPPLPSASGQAEKDGASADGLSAADLARVQARTAELLEEDMRTGQVTQAAAIDNFMR 922
Query: 270 SLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRP 329
++L V+++I + CLP+GL +PFP N MV +GAKGSTVN QISC LGQ ELEG+R
Sbjct: 923 TVLSPVSSDIIKACLPDGLTKPFPHNAFSLMVSTGAKGSTVNQSQISCGLGQQELEGRRV 982
Query: 330 AMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSG 389
+M SG++LPSF PY+ SPRAGGF+ RF+TG++PQE++FHCMAGREGLIDTAVKTSRSG
Sbjct: 983 PLMPSGKSLPSFPPYDPSPRAGGFIVDRFLTGVRPQEYYFHCMAGREGLIDTAVKTSRSG 1042
Query: 390 YLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDK--QFSFLEDNI 447
YLQRCLVK LE L VHYD TVRD+D ++Q LYGEDG+D +YL + Q + L N
Sbjct: 1043 YLQRCLVKGLEELRVHYDNTVRDADAGVVQFLYGEDGVDPLHGKYLDGQAPQMTALARNF 1102
Query: 448 -KWICSYKVILNLLKKHPLSL 467
+C YKV L L++ + L
Sbjct: 1103 AALLCQYKVDLKFLERTGMDL 1123
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 99/165 (60%), Gaps = 6/165 (3%)
Query: 859 LFEEKESKHLLKTDGINVNFISQYRHL-LDLNKLYVNDIHYMASTYGIEAANRVIIREVK 917
+ E K+ + ++T+G N++ + + LDLN + NDI M TYG+EAA I++E+K
Sbjct: 1695 VVEGKDGRCSIQTEGCNLSELWEVGDAALDLNNITSNDIWAMHQTYGVEAARATIVKEIK 1754
Query: 918 NVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASM 977
VF YGI VDPRHL LVAD+MT+ G + A+NR G+ S +M+FE + +A++
Sbjct: 1755 GVFGAYGIAVDPRHLGLVADFMTYQGGFRALNRIGMSEVSSPFLQMSFETTATFLTEAAL 1814
Query: 978 QGREDSLRAPSARVMLGQECRQGTGLFQL-----RNREKKKKKVE 1017
+D L+ PSA++++GQ GTG F + NR+ + VE
Sbjct: 1815 NSEKDDLQTPSAKLVMGQPTGNGTGSFDIMIPVDMNRKASESYVE 1859
Score = 119 bits (298), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 104/185 (56%), Gaps = 22/185 (11%)
Query: 519 PQPLI--STFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDM------------IF 564
P P++ + Q H G+ISE D++ Y GR D H+ + +M ++
Sbjct: 1263 PDPVLGRAKTQLGLHLGAISERFQDAIEDYL-GR-DPEHLFQKSEMGGSKSKAGLELLLW 1320
Query: 565 YKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATK 624
K + SL +PGE VG +A QSIGEPSTQMTLNTFH AG G NVTLGIPRLREI+M A++
Sbjct: 1321 LKYMRSLTSPGEAVGSIAGQSIGEPSTQMTLNTFHLAGHGGANVTLGIPRLREIIMTASR 1380
Query: 625 AIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEK----VKIKEWLEISPEPHMN 680
KTPSM +P + + E A RL+ + R+ + +V+ V +KE L +
Sbjct: 1381 NPKTPSMTVPLCTSISRSE--AQRLSARLRRLQLLEVVHHTQGGVLVKERLGRCASSGVT 1438
Query: 681 YQMKF 685
+Q +
Sbjct: 1439 WQRYY 1443
>gi|301118334|ref|XP_002906895.1| DNA-directed RNA polymerase I subunit RPA1, putative [Phytophthora
infestans T30-4]
gi|262108244|gb|EEY66296.1| DNA-directed RNA polymerase I subunit RPA1, putative [Phytophthora
infestans T30-4]
Length = 1811
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 211/484 (43%), Positives = 285/484 (58%), Gaps = 59/484 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALC-- 70
++EA + + +QY+VP DGSPL GLIQDHV SG KL+ RDTFL + YM L+Y A
Sbjct: 638 RSEAYNIASNDNQYIVPTDGSPLRGLIQDHVDSGVKLTQRDTFLNKDMYMQLLYNAWASM 697
Query: 71 ----ILNTEIRTLPPTIWKPMPLWTGKQVLSTVI---------INLTPKDKVIIRHGELL 117
+ I T+PP I KP PLWTGKQV+++V+ +NL K K+ G+L
Sbjct: 698 EDSGVEKAHIETVPPAILKPEPLWTGKQVITSVLKLLTKGLPPLNLDSKAKI---KGDL- 753
Query: 118 SGILDKKQFGSTQYGLVHAVWDTHVTI-RHGELLSGILDKKQFGSTQYGLVHAVWDTHGA 176
+GS + HV I R GELL G+LDK QFG++ YG+VHA ++ +GA
Sbjct: 754 --------YGSAN--------NEHVVIFRDGELLQGVLDKSQFGASMYGMVHACYEVYGA 797
Query: 177 EHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALG 236
A LS L +LFT YLQ G T + D+ + +++R K++ + +G EA G
Sbjct: 798 RIAADFLSALGRLFTCYLQFAGHTCAMEDLTLNIAAEKRRQKLVKDSEVMGEEAYAEFAG 857
Query: 237 LPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDK--------------------VT 276
L + + + + + RAQI + ++LL
Sbjct: 858 LTELLEKKRAGEKAGKKRRMNEEERAQIRDRMRTLLSGPDADYNAKALDAHMMGCVHGSN 917
Query: 277 NNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGR 336
++I + CLP G + FP NN MV +GAKGS VN QISC LGQ LEG+R ++ SGR
Sbjct: 918 SDIIKTCLPSGQSKAFPKNNFSLMVLTGAKGSMVNHSQISCGLGQQALEGRRVPILCSGR 977
Query: 337 TLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLV 396
+LPSF P++ +PRAGG+V RF+TG++PQE++ HCMAGREGL+DTAVKTSRSGYLQRCL+
Sbjct: 978 SLPSFEPFDPAPRAGGYVTDRFLTGLRPQEYYHHCMAGREGLVDTAVKTSRSGYLQRCLI 1037
Query: 397 KHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLT--DKQFSFLEDNIKWICSYK 454
KHLE L V YD TVR+SD +IQ LYGEDG+D + L+ D QF F N + I S+K
Sbjct: 1038 KHLEDLNVGYDHTVRNSDGGVIQFLYGEDGIDPVQSAMLSGKDTQFDFQAMNHRSI-SHK 1096
Query: 455 VILN 458
+N
Sbjct: 1097 YGIN 1100
Score = 233 bits (594), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 162/516 (31%), Positives = 254/516 (49%), Gaps = 76/516 (14%)
Query: 557 DKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLR 616
D F +++ L S+ PGENVG+LAAQ IGEPSTQMTLNTFH AG G NVTLGIPRLR
Sbjct: 1300 DAFQLLVWVNYLRSMCAPGENVGILAAQGIGEPSTQMTLNTFHLAGHGAANVTLGIPRLR 1359
Query: 617 EILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEK---VKIKEWLEI 673
EI+M A++ + TP M IP D+ +A + + + ++ +++++ V++K+
Sbjct: 1360 EIIMTASQKMSTPMMTIPLRDDVES--SRAQEVEQRLNQVALSELINNTNGVRVKDQFHS 1417
Query: 674 SPEPHM---NYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKR------- 723
S + +YQ++ F + + ++ + R F+ +L I++
Sbjct: 1418 SENGILWVRDYQIRLSFFKLKEIKRVFGLSADQVFNSVGRGFVGKLLTLISREMKKSGVT 1477
Query: 724 -AAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDA------- 775
+A KN S + + +D++ + +G R +V E DEED
Sbjct: 1478 VSAAAEKNNFKAPSGADKKKNDDDEDDDDEQGTLRFGSRGEVQGYGEMDEEDEKIRKAQM 1537
Query: 776 -----VQSHKKVNQEEDNDFEEPEDEERMSEREEDDNTSNIGERFKIEFRDSTNVFVKDV 830
+ S+ + + + N+ + D+E M + + + F + DS V
Sbjct: 1538 ADDSDIDSYDETSGNQKNNGADTSDDESMENGSAKKSKKHQKKTFTADGMDSLEV----- 1592
Query: 831 VNQHNIVHKYSY-------DKKNHMWCKLLF----------------------------- 854
N V K Y DK+N++ L F
Sbjct: 1593 ---PNSVRKNPYFVFCGRNDKENYVELHLRFPTHSKTLLMVPLVERVAKQVLVQYCPGIS 1649
Query: 855 ----LPSNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANR 910
+ + E +E K ++T+G+N I + H+LD+N L NDI+ + TYG+EAA
Sbjct: 1650 RCYLINQRIGEAQEEKPCVQTEGLNFQEIWGFDHILDVNNLATNDIYQVLQTYGVEAARA 1709
Query: 911 VIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLE 970
I +++ VF VYGI VDPRHLSL+ADYMT G Y+ +NR G+ S +Q++TFE ++
Sbjct: 1710 SISKQIMEVFGVYGISVDPRHLSLLADYMTAQGGYMPLNRMGMNNKGSSLQQITFETSMK 1769
Query: 971 KIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+ QA++ G D L +PSAR++LGQ R GTG F L
Sbjct: 1770 FLSQAALGGLVDKLESPSARIVLGQPPRVGTGSFSL 1805
>gi|214028086|gb|ACJ63312.1| RNA polymerase I large subunit [Ceratophyllum demersum]
Length = 538
Score = 371 bits (953), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 202/457 (44%), Positives = 279/457 (61%), Gaps = 39/457 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA ++N QY+VP G P+ GLIQDH+IS L+ DTFLTR EY L+Y +
Sbjct: 10 RAEAYNIVNAHEQYIVPTSGKPIRGLIQDHIISAVLLTKIDTFLTREEYHQLLYSSCVSA 69
Query: 73 NT-------------------EIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRH 113
N EI + P IWKP+PLWTGKQV+++++ ++T +
Sbjct: 70 NAQSSFQGNSGKKISAIISEDEIEPILPAIWKPVPLWTGKQVITSILCHITRGRQPFTVE 129
Query: 114 GELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDT 173
G + GS V + ++ IR EL+ G++DK QF YGLVH V +
Sbjct: 130 N---CGKIKPNYLGSN-------VEEKNLLIRKNELIHGVIDKAQF--EMYGLVHTVQEL 177
Query: 174 HGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACN 233
+G+ A LLS ++LFTV+LQ GFT GV D+L+ + D+KR++ + ++ ++ +A N
Sbjct: 178 YGSNTAGVLLSVFSRLFTVFLQMHGFTCGVDDLLIIPKSDKKRSRRLKQSEKISEDAHAN 237
Query: 234 ALGLPLDT-DPEIISSQLQEA---YASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLI 289
LG + DP + +L++ + + R +DR + L ++T+ + LP GL
Sbjct: 238 FLGTKEGSQDPIKLQMELEKVLRRHGDVAVTR--LDRMMSNALGELTSKVTNELLPNGLS 295
Query: 290 EPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPR 349
+PFP N L M +GAKGS VN QIS LLGQ ELEGKR MVSG+TLP F P++ S R
Sbjct: 296 KPFPKNCLSLMTTTGAKGSMVNFNQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDSSSR 355
Query: 350 AGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMT 409
AGG++ R++TG++PQE++FHCMAGREGL+DTAVKTSRSGYLQRCL+K LE L V YD T
Sbjct: 356 AGGYIGDRYLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKSLESLKVCYDHT 415
Query: 410 VRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDN 446
VRDSD S++Q YGEDG+DV K +LT QF + N
Sbjct: 416 VRDSDGSIVQFTYGEDGVDVCKTSFLT--QFEMIAAN 450
>gi|4096600|gb|AAD09356.1| DNA-directed RNA polymerase I largest subunit [Homo sapiens]
Length = 441
Score = 370 bits (949), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 200/437 (45%), Positives = 270/437 (61%), Gaps = 42/437 (9%)
Query: 337 TLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLV 396
+LP F PYE +PRAGGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRS YLQRC++
Sbjct: 1 SLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSAYLQRCII 60
Query: 397 KHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVI 456
KHLEGL V YD+TVRDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I + +
Sbjct: 61 KHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHL 120
Query: 457 LNLLKKHPLSLALLLLLTFK--SSGKPNFI-----FSPHRTKF----------------- 492
+L + AL K S PN + F + K
Sbjct: 121 HEVLSRADPKKALHHFRAIKKWQSKHPNTLLRRGAFLSYSQKIQEAVKALKLESENRNGR 180
Query: 493 ----TMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK 548
+ +L WY+LD+++R+KY+KK ACP P +S ++PD +F S+SE V Y++
Sbjct: 181 RPWDSGRMLRMWYELDEESRRKYQKKAAACPDPSLSVWRPDIYFASVSETFETKVDDYSQ 240
Query: 549 ---GRTDASH------VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFH 599
+T+ S+ +D+ ++ K SL PGE VG+LAAQSIGEPSTQMTLNTFH
Sbjct: 241 EWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFH 300
Query: 600 FAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMA 659
FAGRG+MNVTLGIPRLREILM+A+ IKTP M +P L + K K+ L K +TR+ +
Sbjct: 301 FAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVL-NTKKALKRVKSLKKQLTRVCLG 359
Query: 660 DVLEKVKIKE--WLEISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELE 717
+VL+K+ ++E +E YQ++F F+P Y+ + ++P I+ E +F K L
Sbjct: 360 EVLQKIDVQESFCMEEKQNKFQVYQLRFQFLPHAYYQQEKCLRPEDILRFMETRFFKLLM 419
Query: 718 VAIAKR--AAQGLKNMN 732
+I K+ A +N+N
Sbjct: 420 ESIKKKNNKASAFRNVN 436
>gi|45181583|gb|AAS55442.1| RNA polymerase I largest subunit [Pinus nigra]
Length = 547
Score = 369 bits (946), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 209/461 (45%), Positives = 286/461 (62%), Gaps = 39/461 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA ++N + QY+VP G P+ GLIQDH++S A L+ RDTFLT+ EY NLVY A C+
Sbjct: 5 RAEAYNIVNANEQYIVPTSGDPIRGLIQDHIVSAALLTKRDTFLTKEEYQNLVYTA-CVS 63
Query: 73 NTE--------------------IRTLPPTIWKPMPLWTGKQVLSTVIINLTP-KDKVII 111
N +LPPTI KP PLWTGKQV++TV+ +T + +
Sbjct: 64 NAAPIFQRGKSCPKVGVVKDEHAFLSLPPTILKPEPLWTGKQVITTVLHYITKGRPPFTV 123
Query: 112 RHGELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVW 171
+ + G K G + V I++ EL+ G++DK QFG +YG+VH V
Sbjct: 124 KKSGRVPGDYWGKSSG-----------ELEVLIQNNELICGVIDKAQFG--KYGMVHIVQ 170
Query: 172 DTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAA 231
+ +GA+ A LLS ++LFT YLQ GFT GV D+L+ + + R K + K+ +LG +
Sbjct: 171 ELYGADAAGHLLSVFSRLFTGYLQMHGFTCGVVDLLLVPQAEDDRKKKLEKSEKLGDKIH 230
Query: 232 CNALGLP-LDTDPEIISSQLQEAYASIPQF-RAQIDRQYKSLLDKVTNNINQVCLPEGLI 289
LG D D I ++++ + + +++DR S L+++T+ +N P+GL+
Sbjct: 231 LQFLGGDRADIDVMCIEEEIEKVLRTKGEVASSRLDRLMSSALNRITSEVNNSLFPKGLL 290
Query: 290 EPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPR 349
+PFP N L M +GAKG VN QIS LLGQ ELEGKR MVSG+TLP F P++ R
Sbjct: 291 KPFPGNCLSLMTMTGAKGGLVNFTQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDSRSR 350
Query: 350 AGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMT 409
AGGF+ RF+TG++PQE++FHCMAGR+GL+DTA+KTSRSGYLQRCL+K+LE L V+YD T
Sbjct: 351 AGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCLIKNLECLKVYYDYT 410
Query: 410 VRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWI 450
VRDSD S+IQ YGEDGLDV K LT +F L N K +
Sbjct: 411 VRDSDGSVIQFNYGEDGLDVMKISCLT--EFEVLATNQKLV 449
Score = 45.1 bits (105), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 26/34 (76%)
Query: 557 DKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPS 590
+KF +M+ K + SLA PGE VGV+A QSIGEPS
Sbjct: 514 NKFLNMMGLKYVSSLAQPGEAVGVIAGQSIGEPS 547
>gi|397566986|gb|EJK45326.1| hypothetical protein THAOC_36058 [Thalassiosira oceanica]
Length = 1952
Score = 368 bits (945), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 204/471 (43%), Positives = 286/471 (60%), Gaps = 36/471 (7%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S+ AE+ + Q++VP DGSPL GLIQDHV +G KL+ +TF+ + EY L++ A
Sbjct: 820 SYLATAESHVIAATDEQFIVPTDGSPLRGLIQDHVDAGVKLTQMNTFIEKEEYQQLLFAA 879
Query: 69 LCIL--------NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGI 120
L L + I LPP I KP LWTGKQV+ST++ +L + SG+
Sbjct: 880 LGSLPGLELIRSDANIELLPPAIRKPRELWTGKQVISTLLNHLRKGNDRDEDPTFNFSGL 939
Query: 121 L--DKKQFGSTQYGLVHAVWDTH-VTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAE 177
K + T +G W+ H V +R G+LL G+LDK FGS+ + LVHAV++++G
Sbjct: 940 SMERKTKTPPTAFG---ESWNEHMVIVRDGDLLQGVLDKAAFGSSDFSLVHAVYESYGPA 996
Query: 178 HAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGTEAA---CN 233
A +L+ L +LFT Y+Q G + + D+++ E D +R K++ + + + AA +
Sbjct: 997 RAGLILNALGRLFTAYIQYYSGHSCRMEDLILTPEADTERRKMVKETYNIASRAAKAWAD 1056
Query: 234 ALG---------------LPLDT-DPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTN 277
+ G LPL + ++S++ + + + A +D +S ++ + +
Sbjct: 1057 SDGGKVEIPSIVQNPKSKLPLKPHEKAAVASKIGKLLSGNKENAAALDGYMQSQVNPLAS 1116
Query: 278 NINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRT 337
NI ++CLP+GL PFP N MV +GAKGSTVN Q+SC LGQ LEG+R M SGRT
Sbjct: 1117 NIIKLCLPDGLAVPFPENTFGLMVTTGAKGSTVNQSQVSCSLGQQALEGRRVPRMSSGRT 1176
Query: 338 LPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVK 397
LPSF PY+ +PRA GF+ RF+TG++PQE++FHCMAGREGL+DTAVKTSRSGYLQRCLVK
Sbjct: 1177 LPSFAPYDPNPRADGFIADRFLTGVRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVK 1236
Query: 398 HLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYL--TDKQFSFLEDN 446
HLE L V YD TVRD + +IQ LYGEDG+D TK +L + F FL N
Sbjct: 1237 HLEELKVSYDHTVRDGEGGVIQFLYGEDGIDPTKAAHLDCESRTFQFLARN 1287
Score = 204 bits (520), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 161/492 (32%), Positives = 241/492 (48%), Gaps = 55/492 (11%)
Query: 559 FYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREI 618
F +++ K +L +PGE VG +AAQSIGEPSTQMTLNTFH AG G NVTLGIPRLREI
Sbjct: 1461 FGELVSAKYGSALVHPGEAVGSIAAQSIGEPSTQMTLNTFHLAGAG-ANVTLGIPRLREI 1519
Query: 619 LMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVL---EKVKIKEWLEISP 675
+M A+K +KTP+M +P + +K+A RL + +++T+ D+L + + ++E LE
Sbjct: 1520 IMTASKDLKTPTMSVPIRDAV--TDKEALRLTREFSQVTLMDLLASHKGITVRESLEAGA 1577
Query: 676 EPHMN--YQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIA---KRAAQGLKN 730
+ Y + PA + + S I + F+ +L + KR +
Sbjct: 1578 GTSWSRCYYVTLKLHPAERIMEAFGLSLSDIARVVTKTFIPKLSRVMKAEFKRNKPEGNS 1637
Query: 731 MNIEQSRDQMEDDVEDDEGEGAEGAGAALGRV--DVSSDEERDEEDAVQSHKKVNQEEDN 788
M+I + + VE + + + A + D DE+ D ED V + +++E
Sbjct: 1638 MSIAVLGGESSEFVEAERSDEPKQKKARKKQKEDDEYEDEKADAEDGVAGSRFGHRKELT 1697
Query: 789 DFEEPEDEERMSEREEDDNTSNIGERFKIEFRDSTNVFV-----KDVVNQHNIVHKYSYD 843
+ E +D+E+ D + + F + + N V +D QH + D
Sbjct: 1698 SYGEMDDDEK------DIAKAANTDLFDDDDDSNANPAVISDAEEDEAQQHISGNALRID 1751
Query: 844 KKNHMWC--KLLFLPSNL--------------------------FEEKES--KHLLKTDG 873
K+ + C L PS F KE L+T G
Sbjct: 1752 KRENALCLQPLKVEPSECPLLMVGLAERAARDTIVKARPGITEGFVNKEEGRGRCLQTAG 1811
Query: 874 INVNFI-SQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHL 932
N + S R ++D N+L N I + YG+EAA R I ++K VFAVYGI VDPRHL
Sbjct: 1812 CNFEEVWSLPRDVVDHNQLVSNHIWGICCAYGVEAARRSIADQIKGVFAVYGISVDPRHL 1871
Query: 933 SLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVM 992
SL+AD+MT+ G Y MNR G+ S + +M+FE + A++ R D L +PSA ++
Sbjct: 1872 SLIADFMTYDGGYKPMNRIGMADISSTLLQMSFESTSVFMVDAALHKRLDPLSSPSANIV 1931
Query: 993 LGQECRQGTGLF 1004
LG + GTG F
Sbjct: 1932 LGSRIKHGTGAF 1943
>gi|214028090|gb|ACJ63314.1| RNA polymerase I large subunit [Illicium parviflorum]
Length = 540
Score = 368 bits (945), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 206/462 (44%), Positives = 283/462 (61%), Gaps = 41/462 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA ++N + QY+VP G P+ GLIQDH++S A L+ +DTFLT+ +Y +LVY A C+
Sbjct: 10 RAEAYNIVNANEQYIVPTSGDPIRGLIQDHIVSAALLTKKDTFLTKEDYQHLVYTA-CVS 68
Query: 73 NTE--------------------IRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDK--VI 110
T +LPP I KP PLWTGKQV++TV+ +T +
Sbjct: 69 TTAPVFQRGKSFPKVGIVKDDHTFLSLPPAILKPEPLWTGKQVITTVLHYVTKGSVPFTM 128
Query: 111 IRHGELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAV 170
R G++ K + V I++ EL+ G++DK QFG ++GLVH V
Sbjct: 129 KRAGKVPGDYWGKNS------------GELKVRIQNNELICGVIDKAQFG--KHGLVHIV 174
Query: 171 WDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEA 230
+ +GA+ A LLS ++LFT YLQ GFT GV D+L+ + + R K + K+ LG
Sbjct: 175 QELYGADVAGHLLSVFSRLFTGYLQMHGFTCGVADLLLVPQAEDDRQKKLEKSEELGDNV 234
Query: 231 ACNALGLPLD-TDPEIISSQLQEAYASIPQF-RAQIDRQYKSLLDKVTNNINQVCLPEGL 288
+G D D E + + ++ S A++DR S L++VT+ +N P+GL
Sbjct: 235 HFQFIGANGDQIDLESMEEETEKHLRSKGDAASARLDRLMSSALNRVTSEVNNALFPKGL 294
Query: 289 IEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSP 348
++PFP+N L M +GAKG VN QIS LLGQ ELEGKR ++SG+TLP FLP++
Sbjct: 295 LKPFPSNCLSLMTMTGAKGGLVNFTQISSLLGQQELEGKRVPRVISGKTLPCFLPWDSRA 354
Query: 349 RAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDM 408
RAGGF+ RF+TG++PQE++FHCMAGR+GL+DTA+KT+RSGYLQRCL+K+LE L V+YD
Sbjct: 355 RAGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTTRSGYLQRCLIKNLECLKVYYDY 414
Query: 409 TVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWI 450
TVRDSD S+IQ YGEDGLDV K LT QF L N K +
Sbjct: 415 TVRDSDGSVIQFNYGEDGLDVMKTSCLT--QFKVLAANNKLV 454
>gi|45181589|gb|AAS55445.1| RNA polymerase I largest subunit [Ginkgo biloba]
Length = 542
Score = 366 bits (940), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 206/462 (44%), Positives = 281/462 (60%), Gaps = 41/462 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA ++N + QY+VP G P+ GLIQDH++S A L+ +DTFLT+ +Y +LVY A C+
Sbjct: 12 RAEAYNIVNANEQYIVPTSGDPIRGLIQDHIVSAALLTKKDTFLTKEDYQHLVYTA-CVS 70
Query: 73 NTE--------------------IRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDK--VI 110
T +LPP I KP PLWTGKQV++TV+ +T +
Sbjct: 71 TTAPVFQRGKSFPKVGIVKDDHTFLSLPPAILKPEPLWTGKQVITTVLHYVTKGSVPFTM 130
Query: 111 IRHGELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAV 170
R G++ K + V I++ EL+ G++DK QFG ++GLVH V
Sbjct: 131 KRAGKVPGDYWGKNS------------GELKVRIQNNELICGVIDKAQFG--KHGLVHIV 176
Query: 171 WDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEA 230
+ +GA+ A LLS ++LFT YLQ GFT GV D+L+ + + R K + K+ LG
Sbjct: 177 QELYGADVAGHLLSVFSRLFTGYLQMHGFTCGVADLLLVPQAEDDRQKKLEKSEELGDNV 236
Query: 231 ACNALGLPLD-TDPEIISSQLQEAYASIPQF-RAQIDRQYKSLLDKVTNNINQVCLPEGL 288
+G D D E + + ++ S A++DR S L++VT+ +N P+GL
Sbjct: 237 HFQFIGANGDQIDLESMEEETEKHLRSKGDAASARLDRLMSSALNRVTSEVNNALFPKGL 296
Query: 289 IEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSP 348
++PFP+N L M +GAKG VN QIS LLGQ ELEGKR M+SG+TLP FLP++
Sbjct: 297 LKPFPSNCLSLMTMTGAKGGLVNFTQISSLLGQQELEGKRVPRMISGKTLPCFLPWDSRA 356
Query: 349 RAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDM 408
RAGGF+ RF+TG++PQE++F CMA R+GL+DTA+KTSRSGYLQRCL+K+LE L V+YD
Sbjct: 357 RAGGFISDRFLTGLRPQEYYFQCMAARDGLVDTAIKTSRSGYLQRCLIKNLECLKVYYDY 416
Query: 409 TVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWI 450
TVRDSD S+IQ YGEDGLDV K LT QF L N K +
Sbjct: 417 TVRDSDGSVIQFNYGEDGLDVMKTSCLT--QFKVLAANNKLV 456
>gi|45181577|gb|AAS55439.1| RNA polymerase I largest subunit [Ephedra viridis]
Length = 534
Score = 364 bits (935), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 203/466 (43%), Positives = 277/466 (59%), Gaps = 69/466 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA---- 68
+AEA ++N + QY VP G P+ GLIQDH++S L+ RDTFL++ EY NLVY A
Sbjct: 12 RAEAYSIVNANKQYTVPTSGDPIRGLIQDHIVSATLLTKRDTFLSKEEYQNLVYSACISS 71
Query: 69 ---------------LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRH 113
+C ++ +LPP +WKP+PLWTGKQV++T++ +T
Sbjct: 72 FSGTSHGCNSQSKVAICKEDSLFVSLPPAVWKPVPLWTGKQVITTILDYIT--------R 123
Query: 114 GELLSGILDKKQFGSTQYGLVHAV------WDTHVTIRHGELLSGILDKKQFGSTQYGLV 167
G L F + G V A+ W+ V I++ EL+ G++DK QFG +YGLV
Sbjct: 124 GSL--------PFSMKKLGRVPAIYWGRESWELEVVIQNNELVCGVIDKAQFG--KYGLV 173
Query: 168 HAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLG 227
H V + +GA+ A LLS ++LFT ++Q + +R + + KA+ G
Sbjct: 174 HVVHELYGADAAGRLLSVFSRLFTCFMQA----------------EIERREKLAKAKEEG 217
Query: 228 TEAACNALGLPLDTDPEIISSQLQEAYASIPQFR-----AQIDRQYKSLLDKVTNNINQV 282
+A LG EI +++E I + + A++DR L+K+T+ +N
Sbjct: 218 DKAHAQFLG---KDAKEIDLGKIEEEIEKILRSKGESSSARLDRLMSGALNKITSEVNGS 274
Query: 283 CLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFL 342
P+GL +PF N L M +GAKG VN QIS LLGQ ELEGKR M+SG+TLP F
Sbjct: 275 VFPDGLRKPFLKNCLSLMTLTGAKGGMVNFTQISSLLGQQELEGKRVPRMISGKTLPCFS 334
Query: 343 PYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGL 402
P+++ PRAGGF+ RF+TG++PQE++FHCMAGR+GL+DTAVKTSRSGYLQRCL+K+LE L
Sbjct: 335 PWDIQPRAGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAVKTSRSGYLQRCLIKNLECL 394
Query: 403 TVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIK 448
TV YD TVRDSD S+IQ YGEDG+DVTK LT F L N K
Sbjct: 395 TVFYDHTVRDSDGSVIQFCYGEDGVDVTKSSCLTG--FEILAANQK 438
>gi|360042899|emb|CCD78309.1| putative dna-directed rna polymerase I largest subunit [Schistosoma
mansoni]
Length = 1775
Score = 362 bits (928), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 200/460 (43%), Positives = 274/460 (59%), Gaps = 26/460 (5%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S+ KAE L +V QYLVPKDG+PL+GLIQDHVI+ KL++RD F A+Y++LVY A
Sbjct: 626 SYAAKAELETLASVPHQYLVPKDGTPLAGLIQDHVIAAVKLTMRDRFFEHADYLDLVYHA 685
Query: 69 L---CILNTEIRTLPPTI--------WKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELL 117
L +N++ + PP+I W P LWTGKQV+ST++INLTP ++ + L+
Sbjct: 686 LRPLFAINSQTSSGPPSIITIKPAICW-PKCLWTGKQVISTLLINLTPTG-LLPLNATLI 743
Query: 118 SGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAE 177
+ + G + D + I G L SG+LDK GS+ GL+H V++ +G E
Sbjct: 744 GRRTKAELWSGVAPGGPTPLSDVDLVICDGYLASGMLDKSHIGSSSTGLIHCVYEAYGPE 803
Query: 178 HAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL 237
A LL+ ++ L +L+ + FT+G++DIL+ D +R + + + LG A + L
Sbjct: 804 SASCLLNGISLLANRFLKFIAFTMGLKDILLSHRADEERQRRFSNLKDLGLCAFADTFSL 863
Query: 238 PLDTDPEIISSQLQEAY--ASIPQFR--------AQIDRQYKSLLDKVTNNINQVCLPEG 287
D E+ S ++ Y A P AQ+D K L + + + +P G
Sbjct: 864 KPD---ELTESNVKRLYRQAQFPSSTDQSSLKRLAQLDMAIKDRLKRAQDAVCDSAIPGG 920
Query: 288 LIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVS 347
L FP NNLQ MV GAKG VN Q+S LGQIELEG+R +M+SG+TLPSF PY+V
Sbjct: 921 LYVGFPENNLQLMVHVGAKGGMVNAQQMSVALGQIELEGRRVPLMLSGKTLPSFPPYDVR 980
Query: 348 PRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYD 407
PRAGG RF+T + QE FFH MAGR+GL+DTAVKTSRSGYLQR +KHLE L++ YD
Sbjct: 981 PRAGGMCTARFLTSLPAQELFFHSMAGRDGLVDTAVKTSRSGYLQRSAIKHLEDLSISYD 1040
Query: 408 MTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNI 447
TVRDS ++IQ YG+DG+DV + +L F DNI
Sbjct: 1041 GTVRDSGSNIIQFRYGDDGVDVCQAGFLQPIGLHFFADNI 1080
Score = 129 bits (325), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 71/161 (44%), Positives = 98/161 (60%), Gaps = 15/161 (9%)
Query: 561 DMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILM 620
D+ K + + A PG+ VG+LAAQS+GEPSTQMTLNTFHFAGRG+MNVTLGIPRLREILM
Sbjct: 1183 DLCLAKIINAQAPPGDPVGLLAAQSVGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILM 1242
Query: 621 MATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMN 680
+ I TP ME+P P K+A +L++ +A K+K+ E L++ +N
Sbjct: 1243 SGSSNISTPCMEVPIWP-----TKEAQQLSEQ-----IAKKFYKLKLSETLQLPIGQKVN 1292
Query: 681 Y-----QMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKEL 716
Y +F P +Y D++ V P +++ ER +L
Sbjct: 1293 YVSDSCTFEFNLQPKSVYSDQSHVTPVRVLRFLERILFPDL 1333
Score = 112 bits (281), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 83/282 (29%), Positives = 129/282 (45%), Gaps = 46/282 (16%)
Query: 761 RVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNTSNIGERFKIEFR 820
+ S D DE + ++NQ + +D E E E+++ S+ R +I F
Sbjct: 1498 KTTTSKDTNSDEFIQWTADPELNQSDVDDERELIQENMERNIEQENAISHDEARKRITF- 1556
Query: 821 DSTNVFVKDVVNQHNIVHKYSYDKKNHM--WCKL---LFLPSN----------------- 858
V + H Y +D+KN W +L +F P
Sbjct: 1557 ---------VTSLHARFSGYDFDRKNSSPKWARLTICMFDPKEGRISIDLETLIMRLINR 1607
Query: 859 -------------LFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGI 905
+ K ++ + + +GIN+ + +Y + DL++LY N+I M TYGI
Sbjct: 1608 SVVSSVPGIEKTIIDRSKPNQWMFRVEGINMIEMMRYPQVFDLSQLYTNNITVMNETYGI 1667
Query: 906 EAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTF 965
EAA + REV VF YGI V+ RHLSL++DY+T G Y A NR + +PS IQ+MTF
Sbjct: 1668 EAARAALQREVSGVFGHYGIHVNSRHLSLISDYLTKFGVYHAFNRRSMSSHPSPIQQMTF 1727
Query: 966 EMPLEKIRQASMQGREDSLRAPSARVMLGQECR-QGTGLFQL 1006
E ++ + D+L +PSA ++ G+ GT F+L
Sbjct: 1728 ETVANVLKHSLQNDSMDNLVSPSASLVAGRIVHYAGTNCFEL 1769
>gi|256073012|ref|XP_002572827.1| DNA-directed RNA polymerase I [Schistosoma mansoni]
Length = 1784
Score = 362 bits (928), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 200/460 (43%), Positives = 274/460 (59%), Gaps = 26/460 (5%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S+ KAE L +V QYLVPKDG+PL+GLIQDHVI+ KL++RD F A+Y++LVY A
Sbjct: 626 SYAAKAELETLASVPHQYLVPKDGTPLAGLIQDHVIAAVKLTMRDRFFEHADYLDLVYHA 685
Query: 69 L---CILNTEIRTLPPTI--------WKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELL 117
L +N++ + PP+I W P LWTGKQV+ST++INLTP ++ + L+
Sbjct: 686 LRPLFAINSQTSSGPPSIITIKPAICW-PKCLWTGKQVISTLLINLTPTG-LLPLNATLI 743
Query: 118 SGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAE 177
+ + G + D + I G L SG+LDK GS+ GL+H V++ +G E
Sbjct: 744 GRRTKAELWSGVAPGGPTPLSDVDLVICDGYLASGMLDKSHIGSSSTGLIHCVYEAYGPE 803
Query: 178 HAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL 237
A LL+ ++ L +L+ + FT+G++DIL+ D +R + + + LG A + L
Sbjct: 804 SASCLLNGISLLANRFLKFIAFTMGLKDILLSHRADEERQRRFSNLKDLGLCAFADTFSL 863
Query: 238 PLDTDPEIISSQLQEAY--ASIPQFR--------AQIDRQYKSLLDKVTNNINQVCLPEG 287
D E+ S ++ Y A P AQ+D K L + + + +P G
Sbjct: 864 KPD---ELTESNVKRLYRQAQFPSSTDQSSLKRLAQLDMAIKDRLKRAQDAVCDSAIPGG 920
Query: 288 LIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVS 347
L FP NNLQ MV GAKG VN Q+S LGQIELEG+R +M+SG+TLPSF PY+V
Sbjct: 921 LYVGFPENNLQLMVHVGAKGGMVNAQQMSVALGQIELEGRRVPLMLSGKTLPSFPPYDVR 980
Query: 348 PRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYD 407
PRAGG RF+T + QE FFH MAGR+GL+DTAVKTSRSGYLQR +KHLE L++ YD
Sbjct: 981 PRAGGMCTARFLTSLPAQELFFHSMAGRDGLVDTAVKTSRSGYLQRSAIKHLEDLSISYD 1040
Query: 408 MTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNI 447
TVRDS ++IQ YG+DG+DV + +L F DNI
Sbjct: 1041 GTVRDSGSNIIQFRYGDDGVDVCQAGFLQPIGLHFFADNI 1080
Score = 129 bits (325), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 71/161 (44%), Positives = 98/161 (60%), Gaps = 15/161 (9%)
Query: 561 DMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILM 620
D+ K + + A PG+ VG+LAAQS+GEPSTQMTLNTFHFAGRG+MNVTLGIPRLREILM
Sbjct: 1183 DLCLAKIINAQAPPGDPVGLLAAQSVGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILM 1242
Query: 621 MATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMN 680
+ I TP ME+P P K+A +L++ +A K+K+ E L++ +N
Sbjct: 1243 SGSSNISTPCMEVPIWP-----TKEAQQLSEQ-----IAKKFYKLKLSETLQLPIGQKVN 1292
Query: 681 Y-----QMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKEL 716
Y +F P +Y D++ V P +++ ER +L
Sbjct: 1293 YVSDSCTFEFNLQPKSVYSDQSHVTPVRVLRFLERILFPDL 1333
Score = 105 bits (261), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 83/291 (28%), Positives = 127/291 (43%), Gaps = 55/291 (18%)
Query: 761 RVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNTSNIGERFKIEFR 820
+ S D DE + ++NQ + +D E E E+++ S+ R +I F
Sbjct: 1498 KTTTSKDTNSDEFIQWTADPELNQSDVDDERELIQENMERNIEQENAISHDEARKRITF- 1556
Query: 821 DSTNVFVKDVVNQHNIVHKYSYDKKNHM--WCKL---LFLPSN----------------- 858
V + H Y +D+KN W +L +F P
Sbjct: 1557 ---------VTSLHARFSGYDFDRKNSSPKWARLTICMFDPKEGRISIDLETLIMRLINR 1607
Query: 859 -------------LFEEKESKHLLKTDGINVNF---------ISQYRHLLDLNKLYVNDI 896
+ K ++ + + +GIN+ F + DL++LY N+I
Sbjct: 1608 SVVSSVPGIEKTIIDRSKPNQWMFRVEGINMIFETSSNLFYNTXXXXQVFDLSQLYTNNI 1667
Query: 897 HYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLN 956
M TYGIEAA + REV VF YGI V+ RHLSL++DY+T G Y A NR + +
Sbjct: 1668 TVMNETYGIEAARAALQREVSGVFGHYGIHVNSRHLSLISDYLTKFGVYHAFNRRSMSSH 1727
Query: 957 PSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECR-QGTGLFQL 1006
PS IQ+MTFE ++ + D+L +PSA ++ G+ GT F+L
Sbjct: 1728 PSPIQQMTFETVANVLKHSLQNDSMDNLVSPSASLVAGRIVHYAGTNCFEL 1778
>gi|219114393|ref|XP_002176367.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217402613|gb|EEC42603.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 1674
Score = 361 bits (927), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 204/456 (44%), Positives = 275/456 (60%), Gaps = 24/456 (5%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S +AEA ++ QY+VP DG+PL GLIQDHV+ G KL+ RDTF + E L++ A
Sbjct: 632 SDLARAEAQYIARTDLQYIVPTDGTPLRGLIQDHVVGGVKLTKRDTFFFKWEVQQLLFAA 691
Query: 69 LCIL--------NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGI 120
L L T I +PP + +P LWTGKQV+ T+I+N K R E +S +
Sbjct: 692 LASLKGLEIIRSGTNIELVPPALVRPRELWTGKQVI-TIILNHLRKGS--DRDSEKMSNL 748
Query: 121 --LDKKQFGSTQYGLVHAVWDTH-VTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAE 177
L + T A + H V I GELL G+LDK FG+T + LVHAV++ +G E
Sbjct: 749 PGLSTSRKSKTPDTAFGAEQEEHLVLILDGELLRGVLDKAAFGATDFSLVHAVYEAYGPE 808
Query: 178 HAISLLSCLAKLFTVYLQR-VGFTLGVRDILVRQERDRKRTKIINKARRLGTEAAC---- 232
A LL+ +LFT Y+Q G + + D+++ D R ++ K+ +G AA
Sbjct: 809 KAGLLLNMFGRLFTAYIQYFAGHSCRMEDLILTSASDISRRMLVQKSYNIGARAAKAWAD 868
Query: 233 NALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPF 292
+ G T +I QL F A +D +S L+ +++ I + CLP+GL PF
Sbjct: 869 SEGGKAASTAAKI--GQLLSGTEGSTNF-AALDGFMQSQLNPLSSAIVKKCLPDGLAVPF 925
Query: 293 PANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGG 352
P N M +GAKGS VN Q++C LGQ LEG+R + SGRTLPSF PY+ +PRA G
Sbjct: 926 PYNTFGLMTTTGAKGSIVNQSQVTCALGQQALEGRRVPRLSSGRTLPSFAPYDPNPRADG 985
Query: 353 FVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRD 412
FV RF+TGI+PQE++FHCMAGREGL+DTAVKTSRSGYLQRCL+KHLE L + YD TVR+
Sbjct: 986 FVMDRFLTGIRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKHLEELKICYDYTVRN 1045
Query: 413 SDLSLIQVLYGEDGLDVTKRQYL--TDKQFSFLEDN 446
++ S++Q LYGEDGLD TK YL ++K F ++ N
Sbjct: 1046 AEGSVVQFLYGEDGLDPTKASYLDCSEKSFEYIARN 1081
Score = 125 bits (315), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 92/146 (63%), Gaps = 3/146 (2%)
Query: 862 EKESKHLLKTDGINVNFISQYR-HLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 920
E+ L+T G VNF Y+ +D NKL NDI + YG+EAA I+++++ VF
Sbjct: 1528 EEGRGRCLQTAG--VNFEEMYKLECVDHNKLLSNDIWAIRCAYGVEAARSSIVQQIRGVF 1585
Query: 921 AVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGR 980
YGIEVDPRHLSL+ADYMT G Y AMNR G+ S + +M+FE L +RQA++
Sbjct: 1586 GAYGIEVDPRHLSLIADYMTFDGGYKAMNRIGMEETSSTLLQMSFETTLHFLRQAALVED 1645
Query: 981 EDSLRAPSARVMLGQECRQGTGLFQL 1006
D +++PSA +++G+ R GTG F +
Sbjct: 1646 MDEMQSPSANIVVGRPIRHGTGAFTV 1671
Score = 112 bits (281), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 86/218 (39%), Positives = 115/218 (52%), Gaps = 23/218 (10%)
Query: 562 MIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMM 621
+I K S+ PGE VG +AAQS+GEPSTQMTLNTFH AG G NVTLGIPRLREI+M
Sbjct: 1174 LIGAKYSSSVCAPGEAVGSIAAQSVGEPSTQMTLNTFHLAGAG-ANVTLGIPRLREIIMT 1232
Query: 622 ATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEK---VKIKEWLEISPEPH 678
A++ +KTP+M +P D EK+A RL + T++T+ +++ V + E LE +
Sbjct: 1233 ASRDLKTPTMSVPL--DDSVTEKQALRLTRDFTKLTLMELVASDRGVTVTEKLEKADNGM 1290
Query: 679 MN--YQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIA---KRAAQGLKNMNI 733
+ Y + F PA ++ + I + F+ L + KRAA N I
Sbjct: 1291 WSRAYYVTIKFHPAERIKEAFGLDIHDIAKVAAKNFVPLLSQNMKKELKRAAVEGDNAVI 1350
Query: 734 E----------QSRDQMEDDVEDDEGEGAEGAGAALGR 761
E +SRDQ E D DE E E A GR
Sbjct: 1351 EVQGGDSRVYIKSRDQDERDA--DEIEIKEAPQARNGR 1386
>gi|225441748|ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Vitis
vinifera]
Length = 1740
Score = 360 bits (923), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 204/480 (42%), Positives = 293/480 (61%), Gaps = 51/480 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVY------ 66
+AEA ++N ++QY+VP G P+ GLIQDH++S L+ +DTFLTR +Y L+Y
Sbjct: 686 RAEAYNIVNANNQYIVPSRGDPIRGLIQDHIVSAVLLTKKDTFLTREQYNQLLYSSGLSS 745
Query: 67 ----------QALCILNTE--IRTLPPTIWKPMPLWTGKQVLSTVIINLT--------PK 106
+ + +L++E ++ L P IWKP PLW+GKQV++ V+ ++T K
Sbjct: 746 GSGSFIGKPGKKVSVLDSEDEMQPLLPAIWKPEPLWSGKQVITAVLNHITRGRKPFTTEK 805
Query: 107 DKVIIRHGELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGE---------LLSGILDKK 157
D I R E +D+K+ G + + + +HGE L+ G++DK
Sbjct: 806 DGKIPR--EYFGSEIDEKKSGKGKDPGSDRRKEKRIEKKHGEYKLLIHKNELVRGVIDKA 863
Query: 158 QFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRT 217
QF +YGLVH V + +G+ A LLS L++LFTV+LQ GFT GV D+L+ D R
Sbjct: 864 QF--DKYGLVHMVQELYGSNTAGILLSVLSRLFTVFLQMHGFTCGVDDLLISPNYDIARK 921
Query: 218 KIINKARRLGTEAACNALGL------PLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSL 271
++K+ +G C +G P+ E+ L A+I ++DR K+
Sbjct: 922 IELDKSENIGELVHCKFIGSNHGKIDPVKLQVEVEKIILSNGEAAI----TRLDRMMKNE 977
Query: 272 LDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAM 331
L+++T+ +N+ L +GL++PFP N L M +GAKGSTVN QIS LGQ +LEGKR
Sbjct: 978 LNELTSKVNKDLLLKGLVKPFPKNCLSLMTTTGAKGSTVNFSQISSFLGQQDLEGKRVPR 1037
Query: 332 MVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYL 391
MVSG+TLP F P++ + RAGGF+ RF+TG+ PQE++FHCMAGREGL+DTAVKTSRSGYL
Sbjct: 1038 MVSGKTLPCFPPWDCAARAGGFISDRFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYL 1097
Query: 392 QRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWIC 451
QRCL+K+LE L V YD TVRDSD S++Q YG+DG+DV + ++T +F L N + +C
Sbjct: 1098 QRCLIKNLECLKVCYDYTVRDSDGSIVQFNYGDDGVDVHQTSFIT--EFEALAVNEEVVC 1155
Score = 135 bits (340), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 128/245 (52%), Gaps = 22/245 (8%)
Query: 526 FQPDAHFGSISENLADSVVKYTKG--------RTDASHVDK---FYDMIFYKNLLSLANP 574
F D F + L + K TK R D ++ K F +++ K + SLA P
Sbjct: 1158 FGQDGKFNGYIQKLPKELRKKTKKFIEGFMEERQDFDNMKKQKDFVNLVKQKYISSLAQP 1217
Query: 575 GENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIP 634
GE VGVLAAQS+GEPSTQMTLNTFH AGRG++NVTLGIPRL+EILM A IKTP M P
Sbjct: 1218 GEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEVNVTLGIPRLQEILMTAANDIKTPIMTCP 1277
Query: 635 FLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMN---YQMKFCFIPAH 691
M + + A RLA + ++T+AD+ E +++ + + + H Y++K
Sbjct: 1278 L--QMGRSKDDAERLAAKLKKVTVADITESMEV-SIVPFTVQDHQTCSIYKLKMKLYEPA 1334
Query: 692 MYRDKTSVKPSKIIDHFERKFLKELEVAIAKR-----AAQGLKNMNIEQSRDQMEDDVED 746
+Y T + + E F++ELE AI G+KN + ++ ED
Sbjct: 1335 LYPPHTGISLEDCEETLEAVFVRELEDAIQNHLLLLSKISGIKNFLPDSRSMASKETDED 1394
Query: 747 DEGEG 751
G+G
Sbjct: 1395 ASGDG 1399
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/150 (44%), Positives = 95/150 (63%), Gaps = 1/150 (0%)
Query: 861 EEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 920
EEK+ L+T G++ + + LD+ +Y N++H M +T+G+EAA II+EV NVF
Sbjct: 1588 EEKKKLPALQTAGVDFTAFWKMQDELDVRYVYSNNVHAMLNTFGVEAARATIIKEVFNVF 1647
Query: 921 AVYGIEVDPRHLSLVADYMTHSGTYVAMNRN-GIRLNPSFIQKMTFEMPLEKIRQASMQG 979
YG++V+ RHLSL+AD+MTHSG Y MNR+ GI + S KMTFE + I +A+ G
Sbjct: 1648 NAYGVKVNIRHLSLIADFMTHSGGYRPMNRHGGIAESVSPFSKMTFETASKFIVEAASHG 1707
Query: 980 REDSLRAPSARVMLGQECRQGTGLFQLRNR 1009
D+L + SAR+ LG + GTG F L +
Sbjct: 1708 MTDNLESASARICLGLPVKMGTGCFDLMQK 1737
>gi|297739697|emb|CBI29879.3| unnamed protein product [Vitis vinifera]
Length = 1669
Score = 359 bits (922), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 204/480 (42%), Positives = 293/480 (61%), Gaps = 51/480 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVY------ 66
+AEA ++N ++QY+VP G P+ GLIQDH++S L+ +DTFLTR +Y L+Y
Sbjct: 615 RAEAYNIVNANNQYIVPSRGDPIRGLIQDHIVSAVLLTKKDTFLTREQYNQLLYSSGLSS 674
Query: 67 ----------QALCILNTE--IRTLPPTIWKPMPLWTGKQVLSTVIINLT--------PK 106
+ + +L++E ++ L P IWKP PLW+GKQV++ V+ ++T K
Sbjct: 675 GSGSFIGKPGKKVSVLDSEDEMQPLLPAIWKPEPLWSGKQVITAVLNHITRGRKPFTTEK 734
Query: 107 DKVIIRHGELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGE---------LLSGILDKK 157
D I R E +D+K+ G + + + +HGE L+ G++DK
Sbjct: 735 DGKIPR--EYFGSEIDEKKSGKGKDPGSDRRKEKRIEKKHGEYKLLIHKNELVRGVIDKA 792
Query: 158 QFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRT 217
QF +YGLVH V + +G+ A LLS L++LFTV+LQ GFT GV D+L+ D R
Sbjct: 793 QF--DKYGLVHMVQELYGSNTAGILLSVLSRLFTVFLQMHGFTCGVDDLLISPNYDIARK 850
Query: 218 KIINKARRLGTEAACNALGL------PLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSL 271
++K+ +G C +G P+ E+ L A+I ++DR K+
Sbjct: 851 IELDKSENIGELVHCKFIGSNHGKIDPVKLQVEVEKIILSNGEAAI----TRLDRMMKNE 906
Query: 272 LDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAM 331
L+++T+ +N+ L +GL++PFP N L M +GAKGSTVN QIS LGQ +LEGKR
Sbjct: 907 LNELTSKVNKDLLLKGLVKPFPKNCLSLMTTTGAKGSTVNFSQISSFLGQQDLEGKRVPR 966
Query: 332 MVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYL 391
MVSG+TLP F P++ + RAGGF+ RF+TG+ PQE++FHCMAGREGL+DTAVKTSRSGYL
Sbjct: 967 MVSGKTLPCFPPWDCAARAGGFISDRFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYL 1026
Query: 392 QRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWIC 451
QRCL+K+LE L V YD TVRDSD S++Q YG+DG+DV + ++T +F L N + +C
Sbjct: 1027 QRCLIKNLECLKVCYDYTVRDSDGSIVQFNYGDDGVDVHQTSFIT--EFEALAVNEEVVC 1084
Score = 135 bits (341), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 128/245 (52%), Gaps = 22/245 (8%)
Query: 526 FQPDAHFGSISENLADSVVKYTKG--------RTDASHVDK---FYDMIFYKNLLSLANP 574
F D F + L + K TK R D ++ K F +++ K + SLA P
Sbjct: 1087 FGQDGKFNGYIQKLPKELRKKTKKFIEGFMEERQDFDNMKKQKDFVNLVKQKYISSLAQP 1146
Query: 575 GENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIP 634
GE VGVLAAQS+GEPSTQMTLNTFH AGRG++NVTLGIPRL+EILM A IKTP M P
Sbjct: 1147 GEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEVNVTLGIPRLQEILMTAANDIKTPIMTCP 1206
Query: 635 FLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMN---YQMKFCFIPAH 691
M + + A RLA + ++T+AD+ E +++ + + + H Y++K
Sbjct: 1207 L--QMGRSKDDAERLAAKLKKVTVADITESMEV-SIVPFTVQDHQTCSIYKLKMKLYEPA 1263
Query: 692 MYRDKTSVKPSKIIDHFERKFLKELEVAIAKR-----AAQGLKNMNIEQSRDQMEDDVED 746
+Y T + + E F++ELE AI G+KN + ++ ED
Sbjct: 1264 LYPPHTGISLEDCEETLEAVFVRELEDAIQNHLLLLSKISGIKNFLPDSRSMASKETDED 1323
Query: 747 DEGEG 751
G+G
Sbjct: 1324 ASGDG 1328
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/150 (44%), Positives = 95/150 (63%), Gaps = 1/150 (0%)
Query: 861 EEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 920
EEK+ L+T G++ + + LD+ +Y N++H M +T+G+EAA II+EV NVF
Sbjct: 1517 EEKKKLPALQTAGVDFTAFWKMQDELDVRYVYSNNVHAMLNTFGVEAARATIIKEVFNVF 1576
Query: 921 AVYGIEVDPRHLSLVADYMTHSGTYVAMNRN-GIRLNPSFIQKMTFEMPLEKIRQASMQG 979
YG++V+ RHLSL+AD+MTHSG Y MNR+ GI + S KMTFE + I +A+ G
Sbjct: 1577 NAYGVKVNIRHLSLIADFMTHSGGYRPMNRHGGIAESVSPFSKMTFETASKFIVEAASHG 1636
Query: 980 REDSLRAPSARVMLGQECRQGTGLFQLRNR 1009
D+L + SAR+ LG + GTG F L +
Sbjct: 1637 MTDNLESASARICLGLPVKMGTGCFDLMQK 1666
>gi|147815227|emb|CAN70028.1| hypothetical protein VITISV_029145 [Vitis vinifera]
Length = 1350
Score = 358 bits (919), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 204/480 (42%), Positives = 293/480 (61%), Gaps = 51/480 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVY------ 66
+AEA ++N ++QY+VP G P+ GLIQDH++S L+ +DTFLTR +Y L+Y
Sbjct: 752 RAEAYNIVNANNQYIVPSRGDPIRGLIQDHIVSAVLLTKKDTFLTREQYNQLLYSSGLSS 811
Query: 67 ----------QALCILNTE--IRTLPPTIWKPMPLWTGKQVLSTVIINLT--------PK 106
+ + +L++E ++ L P IWKP PLW+GKQV++ V+ ++T K
Sbjct: 812 GSGSFIGKPGKKVSVLDSEDEMQPLLPAIWKPEPLWSGKQVITAVLNHITRGRKPFTTEK 871
Query: 107 DKVIIRHGELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGE---------LLSGILDKK 157
D I R E +D+K+ G + + + +HGE L+ G++DK
Sbjct: 872 DGKIPR--EYFGSEIDEKKSGKGKDPGSDRRKEKRIEKKHGEYKLLIHKNELVRGVIDKA 929
Query: 158 QFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRT 217
QF +YGLVH V + +G+ A LLS L++LFTV+LQ GFT GV D+L+ D R
Sbjct: 930 QF--DKYGLVHMVQELYGSNTAGILLSVLSRLFTVFLQMHGFTCGVDDLLISPNYDIARK 987
Query: 218 KIINKARRLGTEAACNALGL------PLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSL 271
++K+ +G C +G P+ E+ L A+I ++DR K+
Sbjct: 988 IELDKSENIGELVHCKFIGSNHGKIDPVKLQVEVEKIILSNGEAAI----TRLDRMMKNE 1043
Query: 272 LDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAM 331
L+++T+ +N+ L +GL++PFP N L M +GAKGSTVN QIS LGQ +LEGKR
Sbjct: 1044 LNELTSKVNKDLLLKGLVKPFPKNCLSLMTTTGAKGSTVNFSQISSFLGQQDLEGKRVPR 1103
Query: 332 MVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYL 391
MVSG+TLP F P++ + RAGGF+ RF+TG+ PQE++FHCMAGREGL+DTAVKTSRSGYL
Sbjct: 1104 MVSGKTLPCFPPWDCAARAGGFISDRFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYL 1163
Query: 392 QRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWIC 451
QRCL+K+LE L V YD TVRDSD S++Q YG+DG+DV + ++T +F L N + +C
Sbjct: 1164 QRCLIKNLECLKVCYDYTVRDSDGSIVQFNYGDDGVDVHQTSFIT--EFEALAVNQEVVC 1221
Score = 112 bits (280), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/121 (52%), Positives = 75/121 (61%), Gaps = 11/121 (9%)
Query: 526 FQPDAHFGSISENLADSVVKYTKG--------RTDASHVDK---FYDMIFYKNLLSLANP 574
F D F + L + K TK R D ++ K F +++ K + SLA P
Sbjct: 1224 FGQDGKFNGYIQKLPKELRKKTKKFIEGFMEERQDFDNMKKQKDFVNLVKQKYISSLAQP 1283
Query: 575 GENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIP 634
GE VGVLAAQS+GEPSTQMTLNTFH AGRG++NVTLGIPRL+EILM A IKTP M P
Sbjct: 1284 GEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEVNVTLGIPRLQEILMTAANDIKTPIMTCP 1343
Query: 635 F 635
Sbjct: 1344 L 1344
>gi|428185541|gb|EKX54393.1| hypothetical protein GUITHDRAFT_160655 [Guillardia theta CCMP2712]
Length = 1521
Score = 358 bits (919), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 195/439 (44%), Positives = 267/439 (60%), Gaps = 31/439 (7%)
Query: 10 HFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL 69
F +AEA+ ++ QY+VP DGSP+ GLIQDHVI+G ++ + ++ EY LV+ L
Sbjct: 656 QFGRAEAACIVKNDLQYIVPTDGSPIRGLIQDHVIAGVQICQLNRMFSQEEYHELVFLML 715
Query: 70 CIL-------NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVI-IRHGELLSGIL 121
L N EI T+PP + KP+ W+GKQ+++T+++NL I + + G +
Sbjct: 716 SNLTSELGLPNNEILTVPPFLLKPVRRWSGKQLITTILVNLLHDVPPINLESPCKVKGNM 775
Query: 122 DKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAIS 181
K+ + + IR ELL+G+LDK G++ YGLVHAV++ HGAE A
Sbjct: 776 YKQH-----------THEGKLVIRGNELLTGVLDKNHIGASAYGLVHAVFEAHGAEKAGL 824
Query: 182 LLSCLAKLFTVYLQ-RVGFTLGVRDILVRQERDRKRTKIINKA--RRLGTEAACNALGLP 238
LL+ L +LFT + Q FT GV D++V +E D KR ++++ A R L + A +
Sbjct: 825 LLTILGRLFTHFQQTHRAFTCGVEDLMVTEEGDAKRAQVLDTANWRTLDSSAKFAEINFE 884
Query: 239 LDTDPEI---ISSQLQEAYASIPQF------RAQIDRQYKSLLDKVTNNINQVCLPEGLI 289
D + + + +A++ R D++ L VT+ + LP G +
Sbjct: 885 DDCSKATGKELERRRRAVHAALAHLLFEEKGRKLNDQRISQALATVTSGVIDAILPGGQL 944
Query: 290 EPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPR 349
PFP NN + M +GAKGS VN QI CLLGQ +LEG+R +M SG+TLP F P E R
Sbjct: 945 IPFPENNFEMMTATGAKGSKVNMSQICCLLGQQQLEGQRVPVMASGKTLPCFQPLETDAR 1004
Query: 350 AGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMT 409
AGGFV RF+TGI+PQE+FFHCMAGREGL+DTAVKTSRSGYLQRCL+KHLE LTV YD T
Sbjct: 1005 AGGFVGDRFLTGIRPQEYFFHCMAGREGLVDTAVKTSRSGYLQRCLMKHLESLTVAYDRT 1064
Query: 410 VRDSDLSLIQVLYGEDGLD 428
VRD+D +IQ LYGEDG+D
Sbjct: 1065 VRDNDGGVIQFLYGEDGID 1083
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 98/157 (62%), Gaps = 8/157 (5%)
Query: 861 EEKESKHLLKTDGINVNFISQYR--------HLLDLNKLYVNDIHYMASTYGIEAANRVI 912
+ + +H + T+G+N++ ++ ++ LDLN+L NDI + + YG+EAA +++
Sbjct: 1363 DSSDKQHSIMTEGVNLDLLALWQLNRQKSIGGALDLNRLRCNDITQVRNVYGVEAARKML 1422
Query: 913 IREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKI 972
+ E+ +VF YGI VD RHLSL++D M ++G + +NR G++ + S + KM+FE +
Sbjct: 1423 LDEISSVFGAYGIGVDLRHLSLISDAMMYAGEHRPLNRIGMKFSASPLLKMSFETTCTFL 1482
Query: 973 RQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNR 1009
A+ D L++PSAR++LG+ + GTG F +R R
Sbjct: 1483 TDATTMADSDDLQSPSARLILGRPVKTGTGYFDVRQR 1519
>gi|396499355|ref|XP_003845454.1| similar to DNA-directed RNA polymerase I subunit [Leptosphaeria
maculans JN3]
gi|312222035|emb|CBY01975.1| similar to DNA-directed RNA polymerase I subunit [Leptosphaeria
maculans JN3]
Length = 1707
Score = 357 bits (917), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 198/455 (43%), Positives = 270/455 (59%), Gaps = 48/455 (10%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
+ +AEA + + QYL G PL GLIQDH+ G LS +DTF TR EY L+Y
Sbjct: 655 NELARAEAMTVADTDHQYLSATAGKPLRGLIQDHISMGVWLSNKDTFFTREEYHQLLYSC 714
Query: 69 L-----CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDK 123
L + + T+ P IWKP PLWTGKQ+++TV+ N+ P + + L+S
Sbjct: 715 LRPEDGHTTSGRVETVEPVIWKPRPLWTGKQLITTVLKNIKPAEYQPL---TLVSK---- 767
Query: 124 KQFGSTQYGLVHAVW-----DTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEH 178
STQ A+W + +V I+ G LL GI+DK Q G GL++ +++ +G
Sbjct: 768 ---SSTQ----GALWGSNSEENNVIIKDGMLLCGIMDKAQIGPAPGGLINGIFEAYGETI 820
Query: 179 AISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLP 238
A LS + +L T L F+ GV D+++ +E D+ R + KA ++G E A
Sbjct: 821 AGRALSIIGRLLTKLLHMRAFSCGVEDLILTEEGDQARLAELRKAEKVGFEVAA------ 874
Query: 239 LDTDPEIISSQLQEAYASIPQFRAQI-----DRQYKSLLDKVTNNIN--------QVCLP 285
+ ++ + A+ P+ R ++ D + LD +TN N CLP
Sbjct: 875 -----KYVTMDTAKIDANNPELRRRLESVLRDDTKQHGLDLLTNTANGQISTAVTAACLP 929
Query: 286 EGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYE 345
LI+ FP N +Q M SGAKGS VN QISC LGQ LEG+R +MVSG++LP F P+E
Sbjct: 930 NKLIKAFPKNQMQAMTGSGAKGSMVNANQISCNLGQQVLEGRRVPIMVSGKSLPCFKPFE 989
Query: 346 VSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVH 405
S RAGG++ RF+TGI+PQE++FH MAGREGLIDTAVKTSRSGYLQRC+VK +EGL V
Sbjct: 990 TSVRAGGYIVNRFLTGIRPQEYYFHMMAGREGLIDTAVKTSRSGYLQRCIVKGMEGLKVE 1049
Query: 406 YDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQF 440
YD +VRDSD S++Q LYGEDGLD+TK++YL D +F
Sbjct: 1050 YDTSVRDSDGSMVQFLYGEDGLDITKQKYLKDFKF 1084
Score = 236 bits (602), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 163/516 (31%), Positives = 263/516 (50%), Gaps = 75/516 (14%)
Query: 559 FYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREI 618
F M+ K L SL PGE VGV+A QSIGEPSTQMTLNTFH AG NVTLGIPRLREI
Sbjct: 1157 FEQMLDLKYLRSLVEPGEAVGVVAGQSIGEPSTQMTLNTFHLAGHSAKNVTLGIPRLREI 1216
Query: 619 LMMATKAIKTPSMEIPFLPDMPKLEKKAN-RLAKSMTRITMADVLEKVKIKEWLEISPE- 676
+M A+ I TP+M++ P P+L KK N + AKS++R+ ++ VL+KV + E +
Sbjct: 1217 VMTASAKISTPAMQL--FP-HPELSKKDNEKFAKSISRLPLSSVLDKVTVTETSGPGTQF 1273
Query: 677 -PHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELE---------------VAI 720
+Y+++ F P+ Y + ++ + + E+KF L+ ++
Sbjct: 1274 SQARSYKIRLDFYPSKEYTQEYAINVRDVAESIEQKFTPRLQKIIRADLKKKGENKSLST 1333
Query: 721 AKRAA-----------------QGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRVD 763
AK A G + ++ E RD +D+ +D EGEG A GR D
Sbjct: 1334 AKSAGIPTIGEASGTTEQQTLHGGDEAVDREGGRD--DDNSDDGEGEGDTTAAKERGRRD 1391
Query: 764 VSSDEERDEEDAVQSHKKVNQEE----DNDFEEPEDEERMSEREEDDNTSNIGERFKIEF 819
S E EE+ + ++++EE D + R + E D + + E+ +
Sbjct: 1392 DSVGYEEPEEEEQAFNDRLDREEASEDDETYGGSPRPSRAATPESDSDDED--EQMLVPS 1449
Query: 820 RDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLF------------------------- 854
+++++ ++N++ V +++D + +C++ F
Sbjct: 1450 DEASDIRRDRIMNKNPDVFDFTFDDRKGAFCEITFEFSTATPKLLMLHHVESAATFATIH 1509
Query: 855 ----LPSNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANR 910
+ + F + + ++ TDG N+ + +Y H++D+N+++ NDI M YG+EA
Sbjct: 1510 VIPGITAAQFAAEGDEPVINTDGSNLLAMREYYHIIDVNRIFTNDIVAMLQLYGVEACRA 1569
Query: 911 VIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLE 970
I+RE+ VFA +GI VD RHL+L+AD MT G + NR G+R N S KM+FE +
Sbjct: 1570 TIVREMHGVFAGHGISVDQRHLNLIADTMTKGGGFTPFNRIGLRGNVSPFMKMSFETTVG 1629
Query: 971 KIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
++ A ++ D L+ PSAR+++G+ GTG F +
Sbjct: 1630 FLKDAVLERDWDDLKNPSARIVVGRLGGIGTGAFDV 1665
>gi|214028094|gb|ACJ63316.1| RNA polymerase I large subunit [Nymphaea odorata]
Length = 542
Score = 350 bits (899), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 198/480 (41%), Positives = 273/480 (56%), Gaps = 83/480 (17%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA---- 68
+AEA ++N + QY+VP G P+ GLIQDH+ S L+ +DTFLTR EY +L+Y A
Sbjct: 10 RAEAYNIVNANEQYIVPTKGEPIRGLIQDHIASSVLLTKKDTFLTREEYHHLLYSACAMV 69
Query: 69 --------LCILNTE--IRTLPPTIWKPMPLWTGKQVLSTVI------------------ 100
C++ +E I + P IWKP PLWTGKQ+++T++
Sbjct: 70 NLGESSKKCCMIKSEGDIHPILPAIWKPYPLWTGKQIITTILNHVAHGLPPFTVENVAKI 129
Query: 101 --INLTPKD----------KVIIRHGELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGE 148
N+ PK K +I E + G++DK Q+G +YGLVH V
Sbjct: 130 HDYNIIPKSCQREANTLHRKCLICKNEFIYGVIDKAQYG--KYGLVHMV----------- 176
Query: 149 LLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILV 208
++ +G GL LLS L++LFT + Q GFT GV D L+
Sbjct: 177 -------QELYGENTAGL---------------LLSILSRLFTAFFQMHGFTCGVDDPLL 214
Query: 209 RQERDRKRTKIINKARRLGTEAACNALGLPLDT-DPEIISSQLQEAYASIPQFRAQ-IDR 266
E + RT+ N+ +G +G+ D DP + +++ + + + +D
Sbjct: 215 VPEAEVLRTESTNRCESIGESVHSKFIGMEYDQLDPISLQREIENVLRTNGESATERLDA 274
Query: 267 QYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEG 326
S L+++TN +N+ P GL++PFP N + M SGAKGS VN +QIS LLGQ ELEG
Sbjct: 275 LMSSELNELTNELNKKLFPVGLVKPFPNNCVFLMTASGAKGSNVNFIQISSLLGQQELEG 334
Query: 327 KRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTS 386
KR MVSG+TLP F P++ +PRAGGF+ RF+TG+ PQE++FHCMAGR+GL+DTA+KTS
Sbjct: 335 KRVPRMVSGKTLPCFPPWDTAPRAGGFISDRFLTGLHPQEYYFHCMAGRDGLVDTAIKTS 394
Query: 387 RSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDN 446
RSGYLQRCLVK+LE L V YD TVRD+D S++Q YGEDG+DV K LT +F L N
Sbjct: 395 RSGYLQRCLVKNLECLKVCYDYTVRDADGSIVQFYYGEDGVDVLKSSCLT--EFKILAAN 452
Score = 45.4 bits (106), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%)
Query: 536 SENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPS 590
+EN + + KG S KF +++ K SLA+ GE VGV+AAQSIGEPS
Sbjct: 488 AENFIRELSEDQKGELKLSKPKKFMNLVKLKYATSLAHAGEAVGVIAAQSIGEPS 542
>gi|26352734|dbj|BAC39997.1| unnamed protein product [Mus musculus]
Length = 1012
Score = 348 bits (892), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 186/385 (48%), Positives = 244/385 (63%), Gaps = 23/385 (5%)
Query: 1 MDGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA S +AEA L QYLVPKDG PL+GLIQDH++SGA +++R F
Sbjct: 618 FDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFF 677
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL 116
TR +YM LVY+ L ++ PP I KP PLWTGKQV+ST++IN+ P+D +
Sbjct: 678 TREQYMELVYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDYAPLN---- 733
Query: 117 LSGILDKKQFGSTQYGL----------VHAVWDTHVTIRHGELLSGILDKKQFGSTQYGL 166
LSG K + GS + ++ ++ V IR GELL G+LDK +GS+ YGL
Sbjct: 734 LSG---KAKIGSKAWVKEKPRPIPDFDPDSMCESQVIIREGELLCGVLDKAHYGSSAYGL 790
Query: 167 VHAVWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARR 225
VH ++ +G E + +L+CLA+LFT YLQ GFTLGV DILV+ D R +II ++ +
Sbjct: 791 VHCCYEIYGGETSGRVLTCLARLFTAYLQLYRGFTLGVEDILVKPNADVVRQRIIEESTQ 850
Query: 226 LGTEAACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCL 284
G +A AL LP + I + Q+A+ S Q ID ++K ++ +N IN+ C+
Sbjct: 851 CGPQAVKAALSLPETASCDEIQGKWQDAHLSKDQRDFNMIDMKFKEEVNHYSNEINKACM 910
Query: 285 PEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPY 344
P GL FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PY
Sbjct: 911 PLGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPY 970
Query: 345 EVSPRAGGFVDGRFMTGIQPQEFFF 369
E +PRAGGFV GRF+TGI+P F
Sbjct: 971 EFTPRAGGFVTGRFLTGIRPPVCIF 995
>gi|345312232|ref|XP_003429226.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1, partial
[Ornithorhynchus anatinus]
Length = 392
Score = 347 bits (891), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 176/374 (47%), Positives = 233/374 (62%), Gaps = 28/374 (7%)
Query: 203 VRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQEAYASI-PQFR 261
V DILV+ + D KR +I ++ G A A LP E + + Q+A+ S Q+
Sbjct: 1 VEDILVKPQADIKRHAVIEESTLCGPRAVRAAFNLPETASQEEVQGRWQDAHLSQDQQYF 60
Query: 262 AQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQ 321
+D ++K ++ +N IN+ C+P GL FP NNLQ MV+SGAKGSTVNTMQISCLLGQ
Sbjct: 61 NMVDLKFKEEVNHYSNEINKACMPFGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQ 120
Query: 322 IELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDT 381
IELEG+RP +M SG++LP F PY+V+PR+GGFV GRF+TGI+P EFFFHCMAGREGL+DT
Sbjct: 121 IELEGRRPPLMPSGKSLPCFQPYDVTPRSGGFVTGRFLTGIKPPEFFFHCMAGREGLVDT 180
Query: 382 AVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFS 441
AVKTSRSGYLQRC++KHLEGL V YD+TVRDSD S+IQ LYGEDGLD+ K Q+L KQF
Sbjct: 181 AVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVIQFLYGEDGLDIPKTQFLQSKQFP 240
Query: 442 FLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPHRTKF--------- 492
FL +N + I K + +L K A + + P F
Sbjct: 241 FLANNYEVIKKSKHLDEVLSKMDPQQAHQHFRALRRWQSKHVASPPREGAFLNFSQKIQA 300
Query: 493 ------------------TMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGS 534
++L+ WY+LD+K++KKY+K+ CP P ++ ++PD +F S
Sbjct: 301 AVKALNLSGSSKNGRNPTAQEILKMWYELDEKSQKKYQKRVVPCPDPCLAVWRPDIYFAS 360
Query: 535 ISENLADSVVKYTK 548
+SE D V Y +
Sbjct: 361 VSETFEDEVDAYAR 374
>gi|255087754|ref|XP_002505800.1| predicted protein [Micromonas sp. RCC299]
gi|226521070|gb|ACO67058.1| predicted protein [Micromonas sp. RCC299]
Length = 1616
Score = 346 bits (888), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 197/453 (43%), Positives = 264/453 (58%), Gaps = 26/453 (5%)
Query: 10 HFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL 69
H +AEA ++ QY VP DGSPL GLIQDHV++G L+ RDTFL R E +Y AL
Sbjct: 609 HLARAEAYEIVRADQQYTVPTDGSPLRGLIQDHVVAGVLLTKRDTFLDREEMRQALYSAL 668
Query: 70 CILNTE-----------IRTLPPTIWKPMPLWTGKQVLSTVIINLT-PKDKVIIRHGELL 117
E I PP I P LWTGKQV+S V+ ++T + + + HG +
Sbjct: 669 VDYADEDKGGGSARGHSITVPPPAIVHPRELWTGKQVISAVLDHITHGRPDMTMSHGCKV 728
Query: 118 SGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAE 177
+G G + +R + GI+DK FG+ GLVHAV + HG
Sbjct: 729 PA----NYWGGENSG------EGEFILRKNYVCCGIVDKNTFGNK--GLVHAVAELHGRV 776
Query: 178 HAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL 237
A LLS L++L TV+LQ+ G T G+ D+++ E + R + + KA AA
Sbjct: 777 LAGDLLSVLSRLLTVWLQKWGMTCGLDDLILTPEAEVGRAEELAKAAAACRSAAATFAEA 836
Query: 238 PLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNL 297
+ + Q+ A A +D + L+K+T+ CLP G +PFP N L
Sbjct: 837 DENVPDAALQQQIAARLAEREGAEAILDMRSSGALNKITSAAVTKCLPHGTKKPFPKNCL 896
Query: 298 QFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGR 357
M +SGAKGS VN QI+ LGQ ELEG+R M+SG+TLP F P+++S RAGG+++ R
Sbjct: 897 SLMTQSGAKGSMVNFSQIAACLGQQELEGRRVPRMISGKTLPCFQPFDLSQRAGGYIEDR 956
Query: 358 FMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSL 417
F +G++PQE+FFHCMAGREGL+DTAVKT+RSGYLQRC++K+LE L VHYD TVRD D S+
Sbjct: 957 FFSGLRPQEYFFHCMAGREGLVDTAVKTARSGYLQRCMIKNLETLRVHYDHTVRDCDGSV 1016
Query: 418 IQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWI 450
+Q YGEDG DVTK Y +D F FL DN + +
Sbjct: 1017 VQFQYGEDGADVTKSSYASD--FQFLADNAELV 1047
Score = 127 bits (318), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/138 (43%), Positives = 89/138 (64%)
Query: 869 LKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 928
++TDG+N L+D KL ND++ M TYG+EAA + +++EV+NVF VYGI VD
Sbjct: 1479 IQTDGVNFAAAWANDDLVDCTKLTTNDVYAMLQTYGVEAARQTLVQEVRNVFGVYGIGVD 1538
Query: 929 PRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPS 988
RHL+L+AD+M G Y +R GI +PS KM++E + A+M+G ED+L +PS
Sbjct: 1539 ARHLTLIADFMMQQGNYRPCSRAGIETSPSPFLKMSYETAAAFLVDATMKGAEDTLESPS 1598
Query: 989 ARVMLGQECRQGTGLFQL 1006
+R+++G+ GTG F L
Sbjct: 1599 SRIVMGRVPDLGTGSFGL 1616
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 67/91 (73%)
Query: 557 DKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLR 616
++F ++ Y+ L LA PGE VG +A QS+GEPSTQMTLNTFHFAGRG+ NVTLGIPRLR
Sbjct: 1097 EEFKRLMNYRYLNQLAAPGEAVGCIAGQSVGEPSTQMTLNTFHFAGRGEANVTLGIPRLR 1156
Query: 617 EILMMATKAIKTPSMEIPFLPDMPKLEKKAN 647
E+LM A K + TP M +P LP +E+ N
Sbjct: 1157 ELLMAAAKKLATPVMTLPLLPHAQTMEQAEN 1187
>gi|303289108|ref|XP_003063842.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454910|gb|EEH52215.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 1665
Score = 343 bits (880), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 191/448 (42%), Positives = 266/448 (59%), Gaps = 24/448 (5%)
Query: 10 HFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL 69
H +AEA ++ QY VP DG PL GLIQDH+ +G ++ RDTFL ++++ L+Y AL
Sbjct: 629 HLARAEAYEIVRADQQYTVPTDGKPLRGLIQDHICAGVLMTCRDTFLDKSDFTQLMYLAL 688
Query: 70 -----------CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLS 118
++ ++ P I KP LWTGKQ+ + VI ++T HG
Sbjct: 689 VDFAGAETGGGAVVGKSLKPPAPAIRKPRALWTGKQLFTAVIEHIT--------HGRAPM 740
Query: 119 GILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEH 178
+ + + +G + + + +R + SGILDK FG+ +GLVHAV + HG
Sbjct: 741 TVSHATKVPANYWGGEDS-GEGVLVVRRNYVCSGILDKNTFGA--HGLVHAVAELHGKVL 797
Query: 179 AISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLP 238
A +S L +L T +LQR G T G+ D+++ +E +R R + ++KA AA
Sbjct: 798 AGDFISVLTRLLTAFLQRHGMTCGMDDLILHEESERGREEELHKATAACRGAAAAFAEAD 857
Query: 239 LDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQ 298
++ + Q+ + A +D + L KVT+ + CLP G +PFP N L
Sbjct: 858 VNVPEMALRKQIAARLSEREGAEAALDMRSSGALAKVTSATVKRCLPHGTKKPFPKNCLS 917
Query: 299 FMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRF 358
M +SGAKGS VN QI+ LGQ ELEG+R M+SG+TLP F P++ S RAGG+V RF
Sbjct: 918 LMTQSGAKGSMVNFSQIAACLGQQELEGRRVPRMISGKTLPCFPPHDTSERAGGYVSDRF 977
Query: 359 MTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLI 418
+G++PQE++FHCMAGREGL+DTAVKTSRSGYLQRCLVK+LE L VHYD TVRD D S++
Sbjct: 978 FSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNLETLRVHYDHTVRDCDGSIV 1037
Query: 419 QVLYGEDGLDVTKRQYLTDKQFSFLEDN 446
Q YG+D +DVTK YL ++F FL DN
Sbjct: 1038 QFHYGDDAVDVTKGGYL--EKFQFLADN 1063
Score = 125 bits (313), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/114 (52%), Positives = 85/114 (74%), Gaps = 1/114 (0%)
Query: 556 VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRL 615
D+F ++ + L +LA+PGE VG +AAQS+GEPSTQMTLNTFHFAGRG+ NVTLGIPRL
Sbjct: 1154 ADEFKRLMNLRYLSALASPGEAVGCVAAQSVGEPSTQMTLNTFHFAGRGEANVTLGIPRL 1213
Query: 616 REILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKE 669
RE+LM A+K + TP M +P L D + + A LA+ + ++ +A+++ K+K+ E
Sbjct: 1214 RELLMAASKKLATPVMTLP-LRDGARNREDATALARRLRKVRLAELVRKLKVAE 1266
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 93/157 (59%), Gaps = 8/157 (5%)
Query: 868 LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 927
+++TDG+N L+D + ND++ M TYG+EAA ++ EV+ VF VYGI V
Sbjct: 1506 MVQTDGVNFAAAWANDDLVDCANVKTNDVYAMMQTYGVEAARETLVAEVRGVFGVYGIAV 1565
Query: 928 DPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAP 987
D RHLSL+ D+M G Y +R G+ + S + KM+FE + A+M+G+ED+L +P
Sbjct: 1566 DARHLSLIGDFMMAQGDYRPCSRAGMETSTSPLLKMSFETAAAFLVDATMRGQEDTLESP 1625
Query: 988 SARVMLGQECRQGTGLFQLRN--------REKKKKKV 1016
SAR++LG+ GTG F LR RE+ KK V
Sbjct: 1626 SARIVLGRTVDMGTGTFGLRYDMKRAAELREEMKKNV 1662
>gi|327242145|gb|AEA40851.1| RNA polymerase I largest subunit [Trichomonas tenax]
Length = 553
Score = 342 bits (878), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 183/449 (40%), Positives = 281/449 (62%), Gaps = 36/449 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCI- 71
+AEA+ L S Y+ P G+P+ GLIQDHV +GA L++++ FLTR +Y LV+ A
Sbjct: 33 RAEANILSLSSRHYITPTAGNPIRGLIQDHVDAGALLTMKNNFLTRQQYQELVFTAFGGE 92
Query: 72 LNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTP--KDKVI-IRHGELLSGILDKKQFGS 128
+ T++ LPP I KP+ LWTGKQV+ST+I+NLT D+++ + +S IL +GS
Sbjct: 93 IKTKLEMLPPAIIKPVELWTGKQVISTIIVNLTKGHADQMMELTSNSKISSIL---CYGS 149
Query: 129 TQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAK 188
+ +T V G+L++GI+DK QFG++++G+VH +++ +G++ A L+ L +
Sbjct: 150 KE--------ETVVRFVDGQLVTGIIDKSQFGASKFGMVHTIYELYGSDIASRFLTMLTR 201
Query: 189 LFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISS 248
LFT ++Q GF+ G+ D++V + D R ++ + +++ +AA D E S
Sbjct: 202 LFTYFMQCHGFSCGIADMIVNHKGDGLREQMKVETQKVALKAA-------KDFVEEFGSK 254
Query: 249 QLQEAYASIPQ----------FRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQ 298
+ Q Y + + + + D L++K ++ P + +PFP N+L
Sbjct: 255 ETQ--YLPLKERLWDLIKDKDMKERYDHMIMGLINKTASDTLNSIFPTNISKPFPQNHLT 312
Query: 299 FMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRF 358
M SGAKGS VN QISCLL Q LEGKR +M SG+TLPSF ++SP++GGFV RF
Sbjct: 313 MMASSGAKGSVVNATQISCLLAQQSLEGKRVPIMRSGKTLPSFDFMDLSPQSGGFVSSRF 372
Query: 359 MTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLI 418
+TG+ P+E++FH M GREGL DTAVKT+ +GYLQRC++K++EGL YD TVR++D ++I
Sbjct: 373 LTGLTPEEYYFHAMGGREGLTDTAVKTANTGYLQRCIIKNIEGLRASYDGTVREADDTII 432
Query: 419 QVLYGEDGLDVTKRQYLTDKQFSFLEDNI 447
Q LYGEDG+D + +Y+T +F F+ N+
Sbjct: 433 QFLYGEDGIDPMQNKYIT--KFDFMLKNL 459
>gi|384247373|gb|EIE20860.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Coccomyxa subellipsoidea C-169]
Length = 1671
Score = 341 bits (874), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 198/467 (42%), Positives = 271/467 (58%), Gaps = 65/467 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE +++ QY+VP DG P+ GLIQDHV+ G KL+ RDTFLTR+++M LVY A C
Sbjct: 632 RAEGYGIVHADEQYIVPTDGKPVRGLIQDHVVGGVKLTKRDTFLTRSDFMQLVY-ACCSP 690
Query: 73 N-------TEIRTLPPTIWKPMPLWTGKQV--LSTVIINLTPKDKVIIRHGELLSGILDK 123
T+++ PPTIWKP PLWTGKQ L T I L + +R G
Sbjct: 691 ARPGLKDVTDLQVPPPTIWKPQPLWTGKQASHLLTYIFTLG-MPPLTLRAG--------- 740
Query: 124 KQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLL 183
+ + +G + + + +GEL++G+LDK FG ++GLVHAV D +G A S +
Sbjct: 741 TKVPADFWGKGGTSGEGKMLVVNGELVTGVLDKAVFG--KFGLVHAVQDLYGNAVAGSFI 798
Query: 184 SCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRL-------------GTEA 230
S L++L T +LQ GFT G D+L+ + +R RT++++ A GT
Sbjct: 799 SALSRLLTYFLQMQGFTCGYDDLLLVKRAERARTELLDTAETAALAASARFEEVWEGTRG 858
Query: 231 ACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIE 290
A I L + Y + A D + L + +++ +VCLP+G +
Sbjct: 859 A--------------IQKALAQRYRQSKEAGAGHDAVATAALHPLGSDVVKVCLPDGQQK 904
Query: 291 PFPANNLQFMVESGAKGSTVNTMQISCLLGQ---------IELEGKRPAMMVSGRTLPSF 341
PFP N L M SGAKGS VN QIS LLGQ ELEG+R M SG+TLP F
Sbjct: 905 PFPLNCLSLMTVSGAKGSNVNFSQISALLGQQACTSLPLLPELEGRRVPRMASGKTLPCF 964
Query: 342 LPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEG 401
P++ R+GGF+ RF+TG++PQE++FHCMAGREGL+DT VKTSRSGYLQRCL+K+LE
Sbjct: 965 APFDPGARSGGFIGDRFLTGLRPQEYYFHCMAGREGLVDTTVKTSRSGYLQRCLIKNLEP 1024
Query: 402 LTVHYDMT--VRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDN 446
L +HYD T VR S++Q YGEDG+DVT R ++ ++F FL N
Sbjct: 1025 LRIHYDHTLVVRR---SIVQFAYGEDGIDVTARSFM--REFGFLARN 1066
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 86/145 (59%)
Query: 862 EKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 921
EK ++TDGIN L+D+ + ND+ + T+G+EAA ++ EV +VF
Sbjct: 1523 EKGPAVTVQTDGINFEGAWANYDLVDVTAVTANDVGAVLRTFGVEAARATVVAEVSSVFG 1582
Query: 922 VYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGRE 981
YGI VDPRHLSL++D+MTH G Y +NR GI + S K+TFE + A+++G
Sbjct: 1583 AYGIGVDPRHLSLISDHMTHQGGYQPLNRMGIEGSASPFLKVTFETAAHFLTDATLKGST 1642
Query: 982 DSLRAPSARVMLGQECRQGTGLFQL 1006
D L +P++R++ G+ GTG +L
Sbjct: 1643 DDLASPASRIVAGRVVGVGTGSCEL 1667
Score = 109 bits (272), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 113/201 (56%), Gaps = 15/201 (7%)
Query: 557 DKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLR 616
+ F ++ K L +LA PGE VGVLA QSIGEPSTQMTLNTFH AGRG+ NVTLGIPRLR
Sbjct: 1156 EGFARLMELKFLRALAAPGEAVGVLAGQSIGEPSTQMTLNTFHMAGRGEANVTLGIPRLR 1215
Query: 617 EILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEI-SP 675
E+LM A ++IKTP M +P LPD K + A A + R+ +A+V + K+ + S
Sbjct: 1216 ELLMTAAQSIKTPIMTLPMLPDRDKTDAAAL--ANRLRRLRLAEVRCRYKLLSFANGGSG 1273
Query: 676 EPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKR-----AAQGLKN 730
Y++ F Y + ++ ++++ F+ FL L + K ++ + +
Sbjct: 1274 GRGREYKVAMRFADPAKYPPEANISYEEVVEAFQEPFLHRLMATLKKEMRKLSPSEAVGS 1333
Query: 731 MNIEQSRDQMEDDVEDDEGEG 751
++I + + +EG G
Sbjct: 1334 ISIAKLGGE-------EEGFG 1347
>gi|168053159|ref|XP_001779005.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669567|gb|EDQ56151.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1646
Score = 338 bits (867), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 302/1032 (29%), Positives = 479/1032 (46%), Gaps = 133/1032 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ G++QD ++ K++ RDTF+ + ++ Y L
Sbjct: 514 RAEVLELMMVPKCVVSPQSNRPVIGIVQDTLLGCRKVTKRDTFIEK----DVFYNILMWW 569
Query: 73 NTEIRTLP-PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQY 131
+P PTI KP PLWTGKQ+ + +I PK ++R + G
Sbjct: 570 EEFAGKIPIPTILKPRPLWTGKQIFTLII----PKQINLMRQAFWHP----DSEVGDLSP 621
Query: 132 GLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFT 191
G DT V I GE+++G L KK G+ Q L+H +W+ G + A L L
Sbjct: 622 G------DTQVRIEKGEVVAGTLCKKTLGTGQGSLIHVIWEEVGPDAARKFLGHTQWLVN 675
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQ 251
+L + GF++G+ D + D + IN+ + + + + D
Sbjct: 676 YWLLQQGFSIGIGDTIA----DAATMEKINETISIAKNDVKDLIKMAQDK---------- 721
Query: 252 EAYASIPQFRAQIDRQYK-SLLDKVTNNINQVCLPEG------LIEPFPANNLQFMVESG 304
Q AQ R K S ++V +N+ G L E +NNL+ MV +G
Sbjct: 722 -------QLEAQPGRTMKESFENRVNGVLNKARDEAGASAQRSLSE---SNNLKAMVTAG 771
Query: 305 AKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQP 364
+KG+ +N Q++ +GQ +EGKR RTLP F + P + GFV+ ++ G+ P
Sbjct: 772 SKGTFINISQMTACVGQQNVEGKRIPYGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTP 831
Query: 365 QEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGE 424
QEFFFH M GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +IQ LYGE
Sbjct: 832 QEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDVMVKYDGTVRNSLGDVIQFLYGE 891
Query: 425 DG----------LDVTK-RQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLL 473
DG LD K ++ ++ + F D W Y + + + + L
Sbjct: 892 DGMDSVWIESQKLDSLKMKKAEFNRVYKFEIDRDDWSPDYINVFDAEVSKLEADRRQMGL 951
Query: 474 TFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDK------------ARKKYRKKFKACP-- 519
+G+ N+ P K + ++ +++D + A K +++ + P
Sbjct: 952 EIAPTGEANWPL-PVNLKRLIWNAQKIFKVDFRKPSDMHPMEIVEAVDKLQERLRVVPGD 1010
Query: 520 QPLISTFQPDA--HFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGEN 577
+ Q +A FG + + S R D I + L+SL PGE
Sbjct: 1011 DQISMEAQRNATLFFGCLLRSTLASKRVLKDYRLTREAFDWVIGEIETRFLMSLVAPGEM 1070
Query: 578 VGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLP 637
+G +AAQSIGEP+TQMTLNTFHFAG NVTLG+PRLREI+ +A K KTPS+ + P
Sbjct: 1071 IGCVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLREIINVAKKT-KTPSLTVFLKP 1129
Query: 638 DMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNY-QMKFCFIPAHMYRDK 696
+ K ++KA + ++ T+ V + +I W + PEP + F+ ++
Sbjct: 1130 GINKEKEKAKNVQCALEYTTLRSVTQATEI--WYD--PEPMSTLIEEDVEFVRSYYEMPD 1185
Query: 697 TSVKPSKIIDHFERKFL-KELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGA 755
V P KI R L +E+ V A + +N+E D + DD E
Sbjct: 1186 EDVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFD-DDLTCIFNDDNAE----- 1239
Query: 756 GAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNTSNIGERF 815
+ R+ + +DE E QS ED+ F ++ E + + + R
Sbjct: 1240 -KLILRIRIMNDEAPKGEATEQS-------EDDVF---------LKKIESNMLTEMALRG 1282
Query: 816 KIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNLFEEKESKHLLKTDGIN 875
+ R VF+K+ DKKN N+ E E + +L T+G+N
Sbjct: 1283 IPDIR---KVFIKE-------------DKKNR-------FDENVAFEPEKEWILDTEGVN 1319
Query: 876 VNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLV 935
+ + + +D ++ N + + GIEA +++E+++V + G V+ RHL+++
Sbjct: 1320 MLAVMCHED-VDASRTLSNHLIEVIEVLGIEAVRNALLKELRDVISFDGSYVNYRHLAIL 1378
Query: 936 ADYMTHSGTYVAMNRNGIRLNPSF-IQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLG 994
D MT+ G +A+ R+GI N + + + +FE ++ + A++ D L+ + +MLG
Sbjct: 1379 CDVMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAEADHLKGVTENIMLG 1438
Query: 995 QECRQGTGLFQL 1006
Q GTG F L
Sbjct: 1439 QLAPIGTGDFGL 1450
>gi|302813666|ref|XP_002988518.1| hypothetical protein SELMODRAFT_128226 [Selaginella moellendorffii]
gi|300143625|gb|EFJ10314.1| hypothetical protein SELMODRAFT_128226 [Selaginella moellendorffii]
Length = 1797
Score = 338 bits (866), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 298/1042 (28%), Positives = 485/1042 (46%), Gaps = 138/1042 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S LM V + P+ P+ G++QD ++ K++ RDTF+ + +MN++ +
Sbjct: 522 RAEVSELMIVPKCIVSPQSNRPVIGIVQDTLLGCRKVTKRDTFIEKDVFMNIL---MWWE 578
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + + P I KP P+WTGKQ+ S +I PK ++R + + + G G
Sbjct: 579 DFDGKVPTPAIVKPRPIWTGKQIFSLII----PKQINMVR----TAAWHNDSETGDNSPG 630
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
DT V I GELL+G L KK G++ L+H +W+ G + A L L
Sbjct: 631 ------DTMVRIEKGELLTGTLCKKTLGTSSGSLIHVIWEEVGPDAARKFLGHTQWLVNY 684
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L + GF++G+ D + K I KA+ + A L++ P
Sbjct: 685 WLLQHGFSIGIGDTIADSATMEKINDTIFKAKNEVKDLIKIAQEKQLESQP--------- 735
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
+ F ++++ D+ ++ Q L E +NN++ MV +G+KGS +N
Sbjct: 736 GRTMMESFENRVNQVLNRARDEAGSSA-QKSLSE-------SNNVKAMVTAGSKGSFINI 787
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+ +GQ +EGKR RTLP F + P + GFV+ ++ G+ PQEF+FH M
Sbjct: 788 SQMIACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFYFHAM 847
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVT-- 430
GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +IQ LYGEDG+D
Sbjct: 848 GGREGLIDTAVKTSETGYIQRRLVKAMEDVMVKYDGTVRNSLGDVIQFLYGEDGMDAVWI 907
Query: 431 KRQYLT---------DKQFSFLEDNIKW------------ICSYKVILNLLKKHPLSLAL 469
+ Q+L D + F DN W I + + I N+ L
Sbjct: 908 ESQHLDSIKMKKKNFDMTYKFEVDNENWNPDYMASDCAEDIKTIQEIRNVFDAEVQKLEA 967
Query: 470 ---LLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDK------------ARKKYRKK 514
L L +SG+P++ P K + ++ ++++ K A K ++K
Sbjct: 968 DRKQLGLEIATSGEPHWPL-PVNLKRLIWNAQKIFKIEMKKPSDMHPMEIVEAVDKLQEK 1026
Query: 515 FKACP--QPLISTFQPDA--HFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLS 570
P P+ Q +A F + + S + R + I + L S
Sbjct: 1027 LLVVPGDDPISIEAQKNATLFFNCLLRSTFASKRVLKEYRLTKEAFEWVIGEIETRFLQS 1086
Query: 571 LANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPS 630
L PGE +G +AAQSIGEP+TQMTLNTFH+AG NVTLG+PRLREI+ +A K IKTPS
Sbjct: 1087 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA-KKIKTPS 1145
Query: 631 MEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCFIPA 690
+ + P++ K +++A + ++ T+ V + +I W + P + + F+ +
Sbjct: 1146 LYVHLKPEVSKEKERAKNVQCALEYTTLRSVTQATEI--WYDPDPMSTI-IEEDVEFVKS 1202
Query: 691 HMYRDKTSVKPSKIIDHFERKFL-KELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEG 749
+ V P KI R L +E+ V A + +N+E D + DD
Sbjct: 1203 YYEMPDEDVTPDKISPWLLRIELNREMMVDKKLSMADIAEKINLE-FVDDLTCIFNDDNA 1261
Query: 750 EGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNTS 809
E + RV + +D+ V +V+Q +D+ F +
Sbjct: 1262 E------KLILRVRIMNDD-------VSKGGEVDQSDDDVFLK----------------- 1291
Query: 810 NIGERFKIEFRDSTNVFVKDVVNQHNIV---HKYS-YDKKNHMWCKLLFLPSNLFEEKES 865
KIE T + ++ + + H + HK +D+ + E+
Sbjct: 1292 ------KIESNMLTEMALRGIPDIHKVFIREHKRQRFDEHEGF-------------KTET 1332
Query: 866 KHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 925
+ +L T+G+N+ +D + N + + GIEA + +++E++ V + G
Sbjct: 1333 EWMLDTEGVNM-LAVMCNEDVDATRTVSNHLIEVIEVLGIEAVRQALLKELREVISFDGS 1391
Query: 926 EVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSF-IQKMTFEMPLEKIRQASMQGREDSL 984
V+ RHL+++ D MT+ G +A+ R+GI N + + + +FE ++ + A++ D L
Sbjct: 1392 YVNYRHLAILCDVMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAEADHL 1451
Query: 985 RAPSARVMLGQECRQGTGLFQL 1006
R + +MLGQ GTG F L
Sbjct: 1452 RGVTENIMLGQLAPIGTGDFGL 1473
>gi|302794771|ref|XP_002979149.1| hypothetical protein SELMODRAFT_110201 [Selaginella moellendorffii]
gi|300152917|gb|EFJ19557.1| hypothetical protein SELMODRAFT_110201 [Selaginella moellendorffii]
Length = 1764
Score = 338 bits (866), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 298/1042 (28%), Positives = 483/1042 (46%), Gaps = 138/1042 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S LM V + P+ P+ G++QD ++ K++ RDTF+ + +MN++ +
Sbjct: 530 RAEVSELMIVPKCIVSPQSNRPVIGIVQDTLLGCRKVTKRDTFIEKDVFMNIL---MWWE 586
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + + P I KP P+WTGKQ+ S +I PK ++R + + + G G
Sbjct: 587 DFDGKVPTPAIVKPRPIWTGKQIFSLII----PKQINMVR----TAAWHNDSETGDNSPG 638
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
DT V I GELL+G L KK G++ L+H +W+ G + A L L
Sbjct: 639 ------DTMVRIEKGELLTGTLCKKTLGTSSGSLIHVIWEEVGPDAARKFLGHTQWLVNY 692
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L + GF++G+ D + K + I KA+ + A L++ P
Sbjct: 693 WLLQHGFSIGIGDTIADSATMEKINETIFKAKNEVKDLIKMAQEKQLESQP--------- 743
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
+ F ++++ D+ ++ Q L E +NN++ MV +G+KGS +N
Sbjct: 744 GRTMMESFENRVNQVLNRARDEAGSSA-QKSLSE-------SNNVKAMVTAGSKGSFINI 795
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+ +GQ +EGKR RTLP F + P + GFV+ ++ G+ PQEF+FH M
Sbjct: 796 SQMIACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFYFHAM 855
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVT-- 430
GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +IQ LYGEDG+D
Sbjct: 856 GGREGLIDTAVKTSETGYIQRRLVKAMEDVMVKYDGTVRNSLGDVIQFLYGEDGMDAVWI 915
Query: 431 KRQYLT---------DKQFSFLEDNIKW------------ICSYKVILNLLKKHPLSLAL 469
+ Q L D + F DN W I + + I N+ L
Sbjct: 916 ESQRLDSIKMKKKDFDMTYKFEVDNENWNPDYMASDCAEDIKTIQEIRNVFDAEVQKLEA 975
Query: 470 ---LLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDK------------ARKKYRKK 514
L L +SG P + P K + ++ ++++ K A K ++K
Sbjct: 976 DRKQLGLEIATSGDPQWPL-PVNLKRLIWNAQKIFKIEMKKPSDMHPMEIVEAVDKLQEK 1034
Query: 515 FKACP--QPLISTFQPDA--HFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLS 570
P P+ Q +A F + + S + R + I + L S
Sbjct: 1035 LLVVPGDDPISIEAQKNATLFFNCLLRSTFASKRVLKEYRLTKEAFEWVIGEIETRFLQS 1094
Query: 571 LANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPS 630
L PGE +G +AAQSIGEP+TQMTLNTFH+AG NVTLG+PRLREI+ +A K IKTPS
Sbjct: 1095 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA-KKIKTPS 1153
Query: 631 MEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCFIPA 690
+ + P++ K +++A + ++ T+ V + +I W + P + + F+ +
Sbjct: 1154 LYVHLKPEVSKEKERAKNVQCALEYTTLRSVTQATEI--WYDPDPMSTI-IEEDVEFVKS 1210
Query: 691 HMYRDKTSVKPSKIIDHFERKFL-KELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEG 749
+ V P KI R L +E+ V A + +N+E D + DD
Sbjct: 1211 YYEMPDEDVTPDKISPWLLRIELNREMMVDKKLSMADIAEKINLE-FVDDLTCIFNDDNA 1269
Query: 750 EGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNTS 809
E + RV + +D+ V +V+Q +D+ F +
Sbjct: 1270 E------KLILRVRIMNDD-------VSKGGEVDQSDDDVFLK----------------- 1299
Query: 810 NIGERFKIEFRDSTNVFVKDVVNQHNIV---HKYS-YDKKNHMWCKLLFLPSNLFEEKES 865
KIE T + ++ + + H + HK +D+ + E+
Sbjct: 1300 ------KIESNMLTEMALRGIPDIHKVFIREHKRQRFDEHEGF-------------KAET 1340
Query: 866 KHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 925
+ +L T+G+N+ +D + N + + GIEA + +++E++ V + G
Sbjct: 1341 EWMLDTEGVNM-LAVMCNEDVDATRTVSNHLIEVIEVLGIEAVRQALLKELREVISFDGS 1399
Query: 926 EVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSF-IQKMTFEMPLEKIRQASMQGREDSL 984
V+ RHL+++ D MT+ G +A+ R+GI N + + + +FE ++ + A++ D L
Sbjct: 1400 YVNYRHLAILCDVMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAEADHL 1459
Query: 985 RAPSARVMLGQECRQGTGLFQL 1006
R + +MLGQ GTG F L
Sbjct: 1460 RGVTENIMLGQLAPIGTGDFGL 1481
>gi|51090906|dbj|BAD35511.1| putative RNA polymerase A(I) large subunit [Oryza sativa Japonica
Group]
Length = 1748
Score = 337 bits (865), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 216/592 (36%), Positives = 306/592 (51%), Gaps = 108/592 (18%)
Query: 264 IDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIE 323
+DR S L+ +T+ +N+ P GL +PFP N L M ++GAKG VN QIS LLGQ E
Sbjct: 950 LDRNMSSELNTLTSKVNKKVFPYGLRKPFPGNCLSLMTQTGAKGGLVNMTQISSLLGQQE 1009
Query: 324 LEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAV 383
LEGKR M+SG+TLP F P++ S RAGGF+ RF+TG++PQE++FHCMAGREGL+DTAV
Sbjct: 1010 LEGKRVPRMISGKTLPCFPPWDTSSRAGGFIGDRFLTGLRPQEYYFHCMAGREGLVDTAV 1069
Query: 384 KTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFL 443
KTSRSGYLQRCL+K LE L V YD TVRD D S+IQ YGEDG+DV K +L DK F L
Sbjct: 1070 KTSRSGYLQRCLIKSLESLKVSYDHTVRDVDGSIIQFCYGEDGVDVLKTSFLDDK-FREL 1128
Query: 444 EDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQL 503
DN + +L L H LL PN S K + +E
Sbjct: 1129 SDN------RRALLGKLDSHNDKHLLL---------NPNGYISELPEKLIENAMEFL--- 1170
Query: 504 DDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMI 563
K+++ + ++ + L+ + VKY
Sbjct: 1171 --KSKRNEKGRYDIKEKELMKLLK----------------VKY----------------- 1195
Query: 564 FYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMAT 623
+ SL +PGE VGV+AAQSIGEPSTQMTLNTFH AGRG+MNVTLGIPRL+E+LM A+
Sbjct: 1196 ----ISSLVDPGEAVGVVAAQSIGEPSTQMTLNTFHLAGRGEMNVTLGIPRLKELLMTAS 1251
Query: 624 KAIKTPSMEIPFLPD----------MPKLEKK---------------ANRLAKSMTRITM 658
I TP M+ P L D KL+K A R+A + R+ +
Sbjct: 1252 AKISTPFMKCPLLEDKTWDDDEEEMDDKLKKARDAERLAAKLRTIDDAERIAAKLRRVRV 1311
Query: 659 ADVLEKVKIKEWLEISPEPHMN--------YQMKFCFIPAHMYRDKTSVKPSKIIDHFER 710
AD++E++ E+ P N Y+++ P +Y ++ + + +
Sbjct: 1312 ADIVERI------EVCTVPFHNNNGCVSTLYKLQLKLYPQGLYPRQSELTVEECHETLRT 1365
Query: 711 KFLKELEVAIAKR--------AAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRV 762
F+ +++AI+K Q +K+ ++E R ++ E+ + G
Sbjct: 1366 VFIDAMDLAISKHLDLLHKINEIQAVKSNDMESQRSDGVEESENGPTDEDNGVSDGENED 1425
Query: 763 DVSSDEE---RDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNTSNI 811
D+ +D E R E D ++ +EE D + +E+ S+ E +D+ + +
Sbjct: 1426 DLGADAEKWKRQEIDEMEYDDDAEKEEGFDMDSESEEDTKSKPESEDHQAKL 1477
Score = 142 bits (358), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 129/231 (55%), Gaps = 21/231 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA---- 68
+AEA +++ + QY+ P+ G + GLIQDH+I L+ DTFL+R EY LVY +
Sbjct: 615 RAEAINIVDANKQYIGPRSGDAVRGLIQDHIIGAVLLTKLDTFLSREEYNQLVYGSVLSS 674
Query: 69 ------------LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDK--VIIRHG 114
+ + + + +PP IWKP PLWTGKQV++T++ ++T + + G
Sbjct: 675 TRRSGQFGKKISIIMDDDALEPVPPAIWKPKPLWTGKQVITTILNHVTKGRPPFTVEKKG 734
Query: 115 ELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTH 174
+ L ++ + ++ + + EL+ G++DK QFG+ YG+VH V + +
Sbjct: 735 RIEKEYLIPEERNGDKVKTINPSEQV-LYVHDNELIKGMIDKAQFGN--YGIVHTVHELY 791
Query: 175 GAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARR 225
G E A LLS ++LFT+ LQ GFT GV D+L+ QE D R +I+ K+ +
Sbjct: 792 GPETAGVLLSSFSRLFTMVLQLHGFTCGVDDLLLSQESDMTREEILGKSEK 842
Score = 123 bits (308), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 65/139 (46%), Positives = 86/139 (61%), Gaps = 1/139 (0%)
Query: 869 LKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 928
L+T G+N + LD+N++ NDIH M +TYG+EAA II EVK VF YGI VD
Sbjct: 1598 LQTAGVNFEVFHKLVDYLDINEVRSNDIHAMLNTYGVEAARATIIGEVKGVFGAYGIHVD 1657
Query: 929 PRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAP 987
RHL+L+AD+MT G Y M+R G+ + + S KMTFE + I +A+ G D+L P
Sbjct: 1658 MRHLNLIADFMTFDGGYRPMSRLGMGQFSTSPFGKMTFETATKFIVEAASHGESDTLDGP 1717
Query: 988 SARVMLGQECRQGTGLFQL 1006
SA V LG+ + GTG F L
Sbjct: 1718 SASVCLGKPVKVGTGSFGL 1736
>gi|356537377|ref|XP_003537204.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Glycine
max]
Length = 1653
Score = 335 bits (860), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 189/469 (40%), Positives = 276/469 (58%), Gaps = 33/469 (7%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVY------ 66
+AEA ++N ++QY+ P G P+ LIQDH++S A L+ +DTFL+ E+ L+Y
Sbjct: 606 RAEAYNIVNANNQYVKPTSGDPIRALIQDHIVSAALLTKKDTFLSYEEFNQLLYSSGVSM 665
Query: 67 -----------QALCILNTE--IRTLPPTIWKPMPLWTGKQVLSTVIINLT-------PK 106
Q + I N+E + PP IWKP PLWTGKQV+S ++ +T +
Sbjct: 666 AGLGSFYGKHGQKVFISNSESEMFLFPPAIWKPEPLWTGKQVISALLYYITRGSPPFTAE 725
Query: 107 DKVIIRHGELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGL 166
I + I K++ + + I +L+ G++DK QFG YG+
Sbjct: 726 KNAKIPSNFFKTQIRKGKRYTEDTSKKKDKPDEDKLLIYKNDLVRGVVDKAQFG--DYGM 783
Query: 167 VHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRL 226
+H V + +G+ A +LLS L++LFT +LQ GFT GV D+++ + +D +R + +
Sbjct: 784 IHTVQELYGSNVAGNLLSALSRLFTTFLQMHGFTCGVDDLMLTEGKDVERMNQLKSCEII 843
Query: 227 GTEAACNALGL--PLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLD-KVTNNINQVC 283
G +G+ + DP + +++ S + +DR+ S L+ + ++ I +
Sbjct: 844 GDSVHREFIGVKNSDNIDPVTLQLNIEKKIRSNGEAALTLDRKMTSNLNSRTSSGILKKL 903
Query: 284 LPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLP 343
L EG+++P N + M SGAKGS VN QIS LGQ ELEGKR MVSG+TLP F P
Sbjct: 904 LSEGILKPSGKNCISLMTTSGAKGSMVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFPP 963
Query: 344 YEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLT 403
++ SPRAGGF+ RF+T + PQE++FHCMAGREGL+DTAVKTSRSGYLQRCL+K+LE L
Sbjct: 964 WDCSPRAGGFIIDRFLTALHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLECLK 1023
Query: 404 VHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICS 452
V YD TVRD+D S+IQ YGEDG+DV + ++T +F L N + + S
Sbjct: 1024 VCYDHTVRDADGSIIQFHYGEDGVDVHQTSFIT--EFGALSTNKELVFS 1070
Score = 126 bits (316), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 103/309 (33%), Positives = 154/309 (49%), Gaps = 39/309 (12%)
Query: 531 HFGSISENLADSVVKYTKGRTDAS-HVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEP 589
+ + E L K++K R S F ++ +K + LA PGE VGVLA+QS+GEP
Sbjct: 1082 YINKLPEALEGKAEKFSKQRNLGSMEQADFLRLMEHKYVSCLAQPGEPVGVLASQSVGEP 1141
Query: 590 STQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRL 649
+TQMTLNTFH AGRG+MNVTLGIPRL+EILM A + IKTP M P D K K A L
Sbjct: 1142 ATQMTLNTFHLAGRGEMNVTLGIPRLQEILMAAARDIKTPFMTCPLRHD--KSMKDAICL 1199
Query: 650 AKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCF-IPAHMYRDKTSVKPSKI-IDH 707
A + +IT+AD+++ +K+ + P + Q+ + + +Y+ K + + I +D
Sbjct: 1200 ADKLKKITVADIIKSMKV----SVVPVTVLGGQVCSIYKLVMKLYKSKQYPEYTDITLDD 1255
Query: 708 FER----KFLKELEVAIAKRAA-----QGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAA 758
+E F++ELE AI G+K + + + ED G+E
Sbjct: 1256 WEETLRVNFVRELEDAIQNHMTLLSKISGIKKFKTD-PQSNYSNSSEDAHSNGSESEKKG 1314
Query: 759 L----------------GRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSER 802
G D+ SD ++ + +Q +V+ ED EE D E E
Sbjct: 1315 QNNDDDDEDGGGVEDTEGYEDLGSDAQKRK---LQGTDEVDY-EDGPEEETHDGELSEEI 1370
Query: 803 EEDDNTSNI 811
E D++ S++
Sbjct: 1371 EGDEDGSDV 1379
Score = 124 bits (310), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 89/146 (60%), Gaps = 1/146 (0%)
Query: 862 EKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 921
EKE L+T G++ + LD+ +Y N++H M + YG+EAA IIREV+NVF
Sbjct: 1502 EKEQIPALQTSGVHFKTFWELEDDLDVRYIYSNNVHAMLNAYGVEAARETIIREVQNVFK 1561
Query: 922 VYGIEVDPRHLSLVADYMTHSGTYVAMNRNG-IRLNPSFIQKMTFEMPLEKIRQASMQGR 980
YGI V+ RHL+L+AD+MTH+G+Y MNR G I + S KM FE I +A+ G+
Sbjct: 1562 SYGISVNIRHLTLIADFMTHTGSYRPMNRTGSIADSTSPFIKMCFETAGNFIVEAAYHGQ 1621
Query: 981 EDSLRAPSARVMLGQECRQGTGLFQL 1006
D+L PSAR+ LG + GTG L
Sbjct: 1622 VDNLETPSARICLGLPVKMGTGCHDL 1647
>gi|449517429|ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
RPA1-like [Cucumis sativus]
Length = 1652
Score = 330 bits (846), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 197/487 (40%), Positives = 282/487 (57%), Gaps = 41/487 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVY------ 66
+AEA ++N ++QY+ P G P+ LIQDH+IS L+ +DTFL E+ L+Y
Sbjct: 600 RAEAYNIVNANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSGIST 659
Query: 67 -----------QALCILNTEIRTLP--PTIWKPMPLWTGKQVLSTVIINLT--------P 105
Q + L+ + LP P +WKP PLWTGKQV++ ++ ++T
Sbjct: 660 SKACASSEKPGQKIFTLDFDAEMLPVLPAVWKPEPLWTGKQVVTALLDHITQGSPPFFVE 719
Query: 106 KDKVIIRHGELL-SGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQY 164
KD I R +L G KK+ + D + I EL+ G++DK QFG Y
Sbjct: 720 KDVKIPRGFLILDEGNSKKKEHTKVDKLKAARLDDDSLLIFKNELVRGVIDKAQFGD--Y 777
Query: 165 GLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKAR 224
GLVH V + +G+ A LLS +++LFTV+LQ GFT GV D+L+ + D++R K +
Sbjct: 778 GLVHTVQELYGSNTAGLLLSVMSRLFTVFLQTHGFTCGVDDLLLIECMDKEREKQLQICE 837
Query: 225 RLGTEAACNALGLP--LDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNN--I 279
++G + L + DP + +++ + + +DR+ S L++ T N +
Sbjct: 838 KIGEQVHLGFLKVKDGEKLDPMTLQLNIEKTISYNGEAALTSLDRKMTSQLNERTGNSKV 897
Query: 280 NQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLP 339
+ L EGL++P N + M SGAKG T N QIS LGQ +LEGKR MVSG+TLP
Sbjct: 898 LKDLLSEGLLKPSVKNCISLMTTSGAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLP 957
Query: 340 SFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHL 399
F P++ + RAGGF+ RF+TG++PQE++FHCMAGREGL+DTAVKTSRSGYLQRCL+K+L
Sbjct: 958 CFPPWDWASRAGGFIVDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNL 1017
Query: 400 EGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTD------KQFSFLEDNIKWICSY 453
E L + YD TVRD+D S+IQ YGEDG+DV K ++T Q E++ + Y
Sbjct: 1018 ESLKICYDHTVRDADGSVIQFQYGEDGVDVHKTAFITKFEALAANQDMLYENSHHQLGKY 1077
Query: 454 KVILNLL 460
V +N L
Sbjct: 1078 NVFINEL 1084
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 182/541 (33%), Positives = 261/541 (48%), Gaps = 90/541 (16%)
Query: 557 DKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLR 616
+ F ++ K L SLA PGE VGVLAAQSIGEPSTQMTLNTFH AGRG+MNVTLGIPRL+
Sbjct: 1111 EDFIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQ 1170
Query: 617 EILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLE--KVKIKEWLEIS 674
EILM A++ IKTP M P A LA + +IT+AD++E V + + +
Sbjct: 1171 EILMTASQDIKTPIMTCPLKEGYSM--DVAKGLANKLKKITVADIIESMNVTVVPFSQRK 1228
Query: 675 PEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAA-----QGLK 729
E Y+++ F P + P + + E FL+ELE I + G+K
Sbjct: 1229 REICSIYKLRIDFYPLENNAQHGHISPEDLENTLETVFLEELEGLIEREMVLLSKINGIK 1288
Query: 730 NM-------------NIEQSR-------------------------------DQM--EDD 743
+ SR D+M EDD
Sbjct: 1289 XFVPDSQSKGSSEGDEVSSSRQEEMDDDDEGNDLDVAEDLGSDXEKQKLQANDEMDYEDD 1348
Query: 744 VEDD--EGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSE 801
EDD E + G + + + D + D + V+ NQ E D + +E+ +E
Sbjct: 1349 SEDDLNAKESSTGFESEVDQGDEAEITNNDMIEIVKDSASENQPEIVDVSKSMSKEKTTE 1408
Query: 802 -------------REEDDNTSNIGER---FKIEFRDST------NVFVKDVVNQHNIVHK 839
R+E D + + + F++ F+ + + V+ + +I
Sbjct: 1409 TSKEKKKVKSELVRKETDRSIFVEAKENHFEVHFKFTNEPHTLLSQIVQRAAQKVSIQRS 1468
Query: 840 YSYDKKNHMWCK---LLFLPSNLF-------EEKESKHLLKTDGINVNFISQYRHLLDLN 889
+ + CK +++ +NL EEKE L+T G++ + + + LD+
Sbjct: 1469 GKIIQCQQITCKEGQVIYHGNNLKERKNLKPEEKEKIPALQTSGVDFKTLWEMQDELDVR 1528
Query: 890 KLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMN 949
+Y NDIH M TYG+EAA IIRE++N+F YGI V+ RHLSLVADYMTHSG Y M+
Sbjct: 1529 YIYSNDIHAMLQTYGVEAARATIIREIQNIFTSYGISVNIRHLSLVADYMTHSGGYRPMS 1588
Query: 950 R-NGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRN 1008
R GI + S +MTFE + I QA++ G D+L PS+R+ LG + GTG F L
Sbjct: 1589 RLGGISDSISPFSRMTFETAGKFIVQAALHGEVDNLETPSSRICLGLPVKMGTGSFDLMQ 1648
Query: 1009 R 1009
+
Sbjct: 1649 K 1649
>gi|302760347|ref|XP_002963596.1| hypothetical protein SELMODRAFT_438401 [Selaginella moellendorffii]
gi|300168864|gb|EFJ35467.1| hypothetical protein SELMODRAFT_438401 [Selaginella moellendorffii]
Length = 1588
Score = 327 bits (839), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 192/478 (40%), Positives = 270/478 (56%), Gaps = 71/478 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA ++N + QY+VP G P+ GLIQDH+IS L+ +DTFLT+ EY LVY A +
Sbjct: 601 RAEAYLIVNANQQYVVPTSGEPIRGLIQDHIISATLLTKKDTFLTKEEYHQLVYSACVPM 660
Query: 73 NT-------------------EIRTLPPTIWKPMPLWTGKQVLSTVIINLT-PKDKVIIR 112
T I T+PP IWKP LW+GKQVL+T++ +T + +
Sbjct: 661 PTLESGSFSKGRNVKTLDNHPAIETVPPAIWKPRCLWSGKQVLTTILNYVTRGRPPFSME 720
Query: 113 HGELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWD 172
G +SG G T L V +R +LL GI+DK QFG ++GLVH V +
Sbjct: 721 RGIRVSG----DYIGKTSEEL-------KVLVRGNDLLCGIIDKAQFG--KFGLVHTVQE 767
Query: 173 THGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKA--------- 223
+GA+ A LLS ++LFT YL GFT G+ D+L+ + +R + A
Sbjct: 768 LYGADDAGHLLSVFSRLFTSYLFMHGFTCGIADMLLLPGAEEERAAKLEPAENELGDIVH 827
Query: 224 -RRLGTE----------------AACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDR 266
R +G E C ++G+ ++ ++ LQ + RA++D
Sbjct: 828 GRFVGVEDKKLSSKRKKVYIALVLTCTSIGVGIEAIKDMTGKILQLRGDA---GRARLDM 884
Query: 267 QYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEG 326
S ++KVT+ +N P+GL++PFP N L M +GAKG VN QIS +LGQ ELEG
Sbjct: 885 LMSSAMNKVTSEVNNALFPKGLVKPFPENCLSLMTVTGAKGGMVNFTQISSMLGQQELEG 944
Query: 327 KRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTS 386
KR MVSG+TLP F PYE R+GGF+ RF+TG++PQE+++HCMAGR+GL+DTAVKT+
Sbjct: 945 KRVPRMVSGKTLPCFQPYEPVARSGGFIKDRFLTGLRPQEYYYHCMAGRDGLVDTAVKTA 1004
Query: 387 RSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD-------VTKRQYLTD 437
+SGYLQRC++K+LE L ++YD T R DL ++ GE D V+K Y+TD
Sbjct: 1005 KSGYLQRCIIKNLECLKINYDFTNR--DLITQKLGLGEHAKDVKNMKAIVSKDAYITD 1060
Score = 248 bits (632), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 184/545 (33%), Positives = 280/545 (51%), Gaps = 87/545 (15%)
Query: 529 DAHFGSISENLADSVVKYTKGRTDAS----------HVDKFYDMIFYKNLLSLANPGENV 578
DA+ I E + K+ G ++ H+ + ++ + SLA PGE V
Sbjct: 1055 DAYITDIPEAMEQKFEKFIGGLSEGKKKAYKLYRRRHIKELRSVMTHTYFASLAAPGEPV 1114
Query: 579 GVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPD 638
GVLA QSIGEPSTQMTLNTFHFAGRG+MNVTLGIPRL EIL +A+KAIKTP M P P
Sbjct: 1115 GVLAGQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLHEILTVASKAIKTPIMTCPLKPG 1174
Query: 639 MPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCFIPAHMYRDKTS 698
K + +LA MT++ +AD+LE V E+S P + +P+ +Y+ +
Sbjct: 1175 --KTRDEGQKLAGVMTKVMLADILEAV------EVSAVPFYVHHG----VPSRLYKVRLR 1222
Query: 699 VKPS-KIIDHFERKFLKELEVAIAKRAAQGLKN------MNIEQSRDQME-----DDVED 746
V P + H + K +E+++AI A+G++ + ++D ++ +D
Sbjct: 1223 VYPEERFPPHLDLKN-EEIDMAIKSVFAKGVRKEIEREIKALTSAKDSIQILGISEDEPS 1281
Query: 747 DEGEGAEGAG------------------------AALGRVDVSSDEERDEEDAVQS-HKK 781
GEG G A R ++DE E D+ Q ++
Sbjct: 1282 PAGEGENEGGKKKVIEAGEVAEEDDDDDDQEEGADAEKRKGRTTDEAAYETDSEQEDEQE 1341
Query: 782 VNQEEDNDFEEPE-DEERMSEREEDDN-----------TSNI---GERFKIEFR---DST 823
++ + +ND + + DEE+ E +D+ +S++ G ++++F+ +S
Sbjct: 1342 MDLDAENDIVDGDNDEEKGGEVVDDEEEGHGKEKEGKKSSSVRARGRSYEMKFQANQNSP 1401
Query: 824 NVFVKDVVNQHNIVHKYSYDK-KNHMWCKLLFLPSNLFEEKESKHLLKTDGINV-NFISQ 881
+F+ ++V + ++ + + KN C + L K L+TDG+N S
Sbjct: 1402 QLFLPNIVEK--VLKTVTVRRMKNIEKCNAIEL-----NGKPENPALQTDGVNFWELWSL 1454
Query: 882 YRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 941
+LDLNKL NDI M +TYG+EAA I+REV+ VF YGI V+ RHLSL+AD+MT
Sbjct: 1455 PDDVLDLNKLTSNDIAAMLNTYGVEAARATIVREVQGVFGSYGISVNARHLSLIADFMTF 1514
Query: 942 SGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGT 1001
G Y +NR GI NPS KM+FE + + AS++ + D L PS+R+++G+ GT
Sbjct: 1515 QGGYRPLNRVGIVSNPSPFLKMSFETASQFLIDASLRRQVDELDTPSSRIIVGRTVGLGT 1574
Query: 1002 GLFQL 1006
G F L
Sbjct: 1575 GCFDL 1579
>gi|449437932|ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Cucumis
sativus]
Length = 1650
Score = 326 bits (835), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 193/490 (39%), Positives = 283/490 (57%), Gaps = 44/490 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVY------ 66
+AEA ++N ++QY+ P G P+ LIQDH+IS L+ +DTFL E+ L+Y
Sbjct: 594 RAEAYNIVNANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSGIST 653
Query: 67 -----------QALCILNTEIRTLP--PTIWKPMPLWTGKQVLSTVIINLTPKDK--VII 111
Q + L+ + LP P +WKP PLWTGKQV++ ++ ++T +
Sbjct: 654 SKACASSEKPGQKIFTLDFDAEMLPVLPAVWKPEPLWTGKQVVTALLDHITQGSPPFFVE 713
Query: 112 RHGELLSGILDKKQFGS--------TQYGLVHAVW--DTHVTIRHGELLSGILDKKQFGS 161
+ ++ G + G+ T+ + A D + I EL+ G++DK QFG
Sbjct: 714 KDVKIPRGFFKCRDMGNNSSKKKEHTKVDKLKAARLDDDSLLIFKNELVRGVIDKAQFGD 773
Query: 162 TQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIIN 221
YGLVH V + +G+ A LLS +++LFTV+LQ GFT GV D+L+ + D++R K +
Sbjct: 774 --YGLVHTVQELYGSNTAGLLLSVMSRLFTVFLQTHGFTCGVDDLLLIECMDKEREKQLQ 831
Query: 222 KARRLGTEAACNALGLP--LDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNN 278
++G + L + DP + +++ + + +DR+ S L++ T N
Sbjct: 832 ICEKIGEQVHLGFLKVKDGEKLDPMTLQLNIEKTISYNGEAALTSLDRKMTSQLNERTGN 891
Query: 279 --INQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGR 336
+ + L EGL++P N + M SGAKG T N QIS LGQ +LEGKR MVSG+
Sbjct: 892 SKVLKDLLSEGLLKPSVKNCISLMTTSGAKGGTANFQQISSHLGQQQLEGKRVPRMVSGK 951
Query: 337 TLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLV 396
TLP F P++ + RAGGF+ RF+TG++PQE++FHCMAGREGL+DTAVKTSRSGYLQRCL+
Sbjct: 952 TLPCFPPWDWASRAGGFIVDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLI 1011
Query: 397 KHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTD------KQFSFLEDNIKWI 450
K+LE L + YD TVRD+D S+IQ YGEDG+DV K ++T Q E++ +
Sbjct: 1012 KNLESLKICYDHTVRDADGSVIQFQYGEDGVDVHKTAFITKFEALAANQDMLYENSHHQL 1071
Query: 451 CSYKVILNLL 460
Y V +N L
Sbjct: 1072 GKYNVFINEL 1081
Score = 233 bits (595), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 180/542 (33%), Positives = 260/542 (47%), Gaps = 91/542 (16%)
Query: 557 DKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLR 616
+ F ++ K L SLA PGE VGVLAAQSIGEPSTQMTLNTFH GRG+MNVTLGI RL+
Sbjct: 1108 EDFIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHVGRGEMNVTLGILRLQ 1167
Query: 617 EILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLE--KVKIKEWLEIS 674
EILM A++ IKTP M P A LA + +IT+AD++E V + + +
Sbjct: 1168 EILMTASQDIKTPIMTCPLKEGYSM--DVAKGLANKLKKITVADIIESMNVTVVPFSQRK 1225
Query: 675 PEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAA-----QGLK 729
E Y+++ F P + P + + E FL+ELE I + G+K
Sbjct: 1226 REICSIYKLRIDFYPLENNAQHGHISPEDLENTLETVFLEELEGLIEREMVLLSKINGIK 1285
Query: 730 NMNIE---------------------------------------------QSRDQM--ED 742
N + Q+ D+M ED
Sbjct: 1286 NFVPDSQSKGSSEGDEVSSSRQKENDDDDDEGNDLDVAEDLGSDMKKQKLQANDEMDYED 1345
Query: 743 DVEDD--EGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMS 800
D EDD E + G + + + D + D + V+ NQ E D + +E+ +
Sbjct: 1346 DSEDDLNAKESSTGFESEVDQGDEAEITNNDMIEIVKDSASENQPEIVDVSKSMSKEKTT 1405
Query: 801 E-------------REEDDNTSNIGER---FKIEFRDST------NVFVKDVVNQHNIVH 838
E R+E D + + + F++ F+ + + V+ + +I
Sbjct: 1406 ETSKEKKKVKSELVRKETDRSIFVEAKENHFEVHFKFTNEPHTLLSQIVQRAAQKVSIQR 1465
Query: 839 KYSYDKKNHMWCK---LLFLPSNLF-------EEKESKHLLKTDGINVNFISQYRHLLDL 888
+ + CK +++ +NL EEKE L+T G++ + + + LD+
Sbjct: 1466 SGKIIQCQQITCKEGQVIYHGNNLKERKNLKPEEKEKIPALQTSGVDFKTLWEMQDELDV 1525
Query: 889 NKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAM 948
+Y NDIH M TYG+EAA IIRE++N+F YGI V+ RHLSLVADYMTHSG Y M
Sbjct: 1526 RYIYSNDIHAMLQTYGVEAARATIIREIQNIFTSYGISVNIRHLSLVADYMTHSGGYRPM 1585
Query: 949 NR-NGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLR 1007
+R GI + S +MTFE + I QA++ G D+L PS+R+ LG + GTG F L
Sbjct: 1586 SRLGGISDSISPFSRMTFETAGKFIVQAALHGEVDNLETPSSRICLGLPVKMGTGSFDLM 1645
Query: 1008 NR 1009
+
Sbjct: 1646 QK 1647
>gi|225217045|gb|ACN85329.1| putative RNA polymerase A(I) large subunit [Oryza brachyantha]
Length = 1138
Score = 322 bits (825), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 199/534 (37%), Positives = 274/534 (51%), Gaps = 121/534 (22%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA +++ + QY+ P+ G + GLIQDH++ L+ DTFL+R EY LVY + C+
Sbjct: 607 RAEAINIVDANKQYIGPRSGDAVRGLIQDHIVGAVLLTKLDTFLSREEYNQLVYGS-CVF 665
Query: 73 NTEIRT------------------LPPTIWKPMPLWTGKQVLSTVIINLTPKDK---VII 111
++ R+ +PP IWKP PLWTGKQV++T I+N K ++
Sbjct: 666 SSTRRSAKFGKKISIIMDDDALEPVPPAIWKPKPLWTGKQVITT-ILNHVTKGHPPFTVM 724
Query: 112 RHGELLSGILDKKQFGSTQYGLV--------------HAVWD-THVTIRH---------- 146
+ G++ L K+ + Q+ H D HV R
Sbjct: 725 QTGKISKEYLLPKKCDAVQFNKRKCDDAKDKTRDPKEHKKCDGIHVKKRKCDGSKDKTKD 784
Query: 147 ----------------------GELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLS 184
EL+ G++DK QFG G+VH V + +G + A LLS
Sbjct: 785 PKERGNEDKTRDRSELVLYVHDNELIKGMIDKAQFGKD--GIVHTVHELYGPDAAGVLLS 842
Query: 185 CLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACN----------- 233
++LFT+ LQ GFT GV D+L+ Q D R +I LGT C+
Sbjct: 843 SFSRLFTMVLQFHGFTCGVDDLLLCQASDELRKEI------LGTSEECSKIVHKEFICPQ 896
Query: 234 -----------------ALGLPLDTDPEIISSQLQEAYASIPQFRAQI------------ 264
A + L D E ++ +E + + ++
Sbjct: 897 NKKGDEAEDTRPKEDGKAEDMCLKEDNEAEDTRSKEGVEDQVKLQMEVERVIRRNRESAT 956
Query: 265 ---DRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQ 321
DR+ + L+ +T+ +NQ P GL +PFP N L M ++GAKG VN QIS LLGQ
Sbjct: 957 VMLDRKMSNTLNVITSKVNQELFPYGLQKPFPGNCLSLMTQTGAKGGLVNMTQISSLLGQ 1016
Query: 322 IELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDT 381
ELEGKR M+SG+TLP F ++ S RAGGF+ RF+TG++PQE++FHCMAGREGL+DT
Sbjct: 1017 QELEGKRVPRMISGKTLPCFPSWDTSARAGGFISDRFLTGLRPQEYYFHCMAGREGLVDT 1076
Query: 382 AVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYL 435
AVKTSRSGYLQRCL+K LE L V YD TVRD D S+IQ YGEDG+DV K +L
Sbjct: 1077 AVKTSRSGYLQRCLIKSLESLKVSYDHTVRDVDGSIIQFCYGEDGVDVLKTSFL 1130
>gi|224087062|ref|XP_002308049.1| predicted protein [Populus trichocarpa]
gi|222854025|gb|EEE91572.1| predicted protein [Populus trichocarpa]
Length = 1168
Score = 322 bits (824), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 188/471 (39%), Positives = 276/471 (58%), Gaps = 50/471 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA---- 68
+AE ++N ++QY+ P +G P+ LIQDH+IS L+ +DTFLT E L+Y +
Sbjct: 599 RAEGYNIVNANNQYVRPSNGEPIRSLIQDHIISAVLLTKKDTFLTEDEVYQLLYSSGVSN 658
Query: 69 ---------------LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKD------ 107
EI T+ P I KP+ LW+GKQ+++ V+ ++T
Sbjct: 659 ARPTSFSGKAGRKVIFLSYEDEIETVDPAIRKPIYLWSGKQLITAVLNHITRGHPPFTVE 718
Query: 108 ----------KVIIRHGELLSG--ILDKKQFGSTQYGLVHA----VWDTHVTIRHGELLS 151
K I++G+ +G + K + G V+ + D + I L+
Sbjct: 719 KGGKLSYDFFKSKIKNGKSSNGEKVGVSKPMKEKESGKVNPKENQLEDDKMIIFRNVLVQ 778
Query: 152 GILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQE 211
G++DK QFG +YGLVH V + GA+ A +LLS ++LFT YLQ GFT GV D+L+ +
Sbjct: 779 GVIDKAQFG--EYGLVHTVQELFGAKAAGTLLSVFSRLFTAYLQMHGFTCGVDDLLITKI 836
Query: 212 RDRKRTKIINKARRLGTEAACNALGLP---LDTDPEIISSQLQEAYASIPQFR-AQIDRQ 267
+D +R K + + G + +G+ + DP + S +++ S + +DRQ
Sbjct: 837 KDDERKKQLENCEKCGEQIHRKFIGIKDENIKIDPLELQSNIEKTIRSDGESALTYLDRQ 896
Query: 268 YKSLLDKVTNN--INQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELE 325
+ L+ T++ IN++ L EGL++P N + M SGAKGS VN QIS LGQ ELE
Sbjct: 897 MTNELNSKTSSGVINEL-LSEGLLKPSGKNCISLMTTSGAKGSKVNFQQISSFLGQQELE 955
Query: 326 GKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKT 385
GKR MVSG+TLP F P++ + RAGG++ RF+TG++PQE++FHCMAGREGL+DTAVKT
Sbjct: 956 GKRVPRMVSGKTLPCFHPWDWAARAGGYIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKT 1015
Query: 386 SRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLT 436
SRSGYLQRCL+K+LE L + YD TVRD+D S++Q YGEDG+DV + ++
Sbjct: 1016 SRSGYLQRCLIKNLECLRIGYDHTVRDADGSIVQFYYGEDGVDVHQTGFIA 1066
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 32/48 (66%)
Query: 547 TKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMT 594
TK R+ FY ++ K SLA PGE VGVLAAQS+GEPSTQMT
Sbjct: 1121 TKDRSSNLVEHDFYKLLKQKFFTSLAQPGEPVGVLAAQSVGEPSTQMT 1168
>gi|401418664|ref|XP_003873823.1| DNA-directed rna polymerase I largest subunit,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
gi|322490055|emb|CBZ25317.1| DNA-directed rna polymerase I largest subunit,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
Length = 1810
Score = 320 bits (820), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 225/692 (32%), Positives = 341/692 (49%), Gaps = 88/692 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA---- 68
KAE LM+ + YLVP G P+ G IQDHV++G L+LRD FL ++ VY
Sbjct: 675 KAELECLMDANLNYLVPTSGKPIRGFIQDHVVAGVLLTLRDNFLPHHTFVQFVYNGIAPY 734
Query: 69 -------LCILNTEIRTLP-PTIWKPMPLWTGKQVLSTVIINLT---------PKDKVII 111
L T +P P + KP PLWTGKQ++S ++ +T PK +
Sbjct: 735 MHKHGKPLSAHATLTELIPMPAVLKPRPLWTGKQLISVIVHYVTGVVESRGGAPKSNGVS 794
Query: 112 RHGELL----SGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLV 167
HG L + G + D HV EL++GIL K Q GS+ +V
Sbjct: 795 MHGTSLIQPSTYTTTDPHTGELVAASRKCMEDDHVQFFESELITGILCKNQLGSSNLSVV 854
Query: 168 HAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLG 227
H + + +G L L ++ ++ LQR GF++G+ D+++ QE +RT ++ +
Sbjct: 855 HVIHEIYGPHMVGELFGALGRVLSMSLQREGFSIGMDDMMLLQEE--RRTALLRE----- 907
Query: 228 TEAACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEG 287
LD+ P S+P A + ++ + ++ + +P
Sbjct: 908 -----------LDSAP-----------LSLPDDEATV----MPVIMGMATSLQKEFVPGR 941
Query: 288 LIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVS 347
++ PFP N L M SGAKGS NT+Q+S LGQ +G+R M SG+TLP F E
Sbjct: 942 MLRPFPHNQLLTMTMSGAKGSNTNTIQMSLGLGQQLFDGRRVKRMNSGKTLPPFFVAETR 1001
Query: 348 PRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYD 407
R+ G+ GRF +GI+P E+ FH MAGR+GLIDTAVKTSRSG+LQRCLVK LE L V +D
Sbjct: 1002 ARSLGYAIGRFTSGIRPAEYTFHAMAGRDGLIDTAVKTSRSGHLQRCLVKGLESLVVQWD 1061
Query: 408 MTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSL 467
+VRD++ S+IQ LYG DGLD + L + + ++DN ++L +K ++
Sbjct: 1062 HSVRDANGSVIQFLYGGDGLDPMRTSSL--QAWEVVKDN---------CVDLGRKMNVNT 1110
Query: 468 ALLL-------LLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQ 520
++ + S GK PH M ++ + R +KA
Sbjct: 1111 GVMTGEEEAEEAASRNSQGKRE---RPHEAAAAMRAAQRALLEAEAQRDPLPAHYKASLD 1167
Query: 521 PLISTFQPDAHFGSISE--NLADSVVKYTKGRTDASHVDKFY-----DMIFYKNLLSLAN 573
+ T F +S+ A + V K R ++Y ++ + + + +
Sbjct: 1168 TYLETKAQYPLFKKVSQVARWAKNGVLNEKLREKREESIRYYRDVMTELTTRRRVRAYCD 1227
Query: 574 PGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEI 633
GE VG+LAAQ+ GEPSTQMTLNTFH AG +VT GIPRLRE+L+ A+ ++ ++ +
Sbjct: 1228 AGEPVGLLAAQAAGEPSTQMTLNTFHSAGSTVTHVTEGIPRLRELLIYAS--VQKVAIVV 1285
Query: 634 PFLPDMPKLEKKANRLAKSMTRITMADVLEKV 665
P E+ +R+ ++ + D + +V
Sbjct: 1286 PVEKATEVDEEAISRILQAGVATRLTDCMARV 1317
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+ + K DI M +++G+E+ + + E++ +F Y VD HL+L+AD TH G +
Sbjct: 1675 IKVQKARSTDIRDMCTSFGVESGYKALFDELEKLFKRY--SVDYHHLTLIADAATHRGVW 1732
Query: 946 VAMNRNG-IRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
N G I + S + +MTF + A +G D L + S+ +M+G+ R GT L
Sbjct: 1733 ENYNFTGVISHSASPLFQMTFASSKRFLHTALTRGVGDELNSISSAIMVGERPRVGTALV 1792
Query: 1005 QL 1006
++
Sbjct: 1793 KV 1794
>gi|300708969|ref|XP_002996654.1| hypothetical protein NCER_100217 [Nosema ceranae BRL01]
gi|239605972|gb|EEQ82983.1| hypothetical protein NCER_100217 [Nosema ceranae BRL01]
Length = 1079
Score = 320 bits (819), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 182/438 (41%), Positives = 254/438 (57%), Gaps = 31/438 (7%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S+ K+EA L YLVP +G P+ GL QDHV+ ++L+++D+F T+ +Y++L+
Sbjct: 494 SYVAKSEAESLTLNDHMYLVPTNGEPIRGLTQDHVVGASRLTIKDSFYTKEQYIDLLQSG 553
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGS 128
L N + P I +P+ L++GKQ+ S ++ NL L + +K + G+
Sbjct: 554 LS--NRRLILDNPCISQPVSLYSGKQIASGILKNLN-----------LYISVTNKGKIGA 600
Query: 129 TQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAK 188
+ L H + + GE+L+GILDK G TQY L+HA +G A LL+ +
Sbjct: 601 KTW-LGHEEEGNSIFLE-GEMLTGILDKNVIGPTQYSLIHACGHLYGFSVANDLLTYFGR 658
Query: 189 LFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISS 248
+ YL GFT+ + D+L+ D R II + G E A + + +P+
Sbjct: 659 VVNRYLFNFGFTVRIDDLLLDSFADSSRNDII----KAGNENAKIKQKIYMKDNPD---- 710
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGS 308
Y A +D + ++ VT I C+P G ++ FP NN+ ++ +GAKGS
Sbjct: 711 -----YYINSNKTAHLDSIIREEMNNVTTQIVNTCVPLGQLKKFPNNNMGLVIITGAKGS 765
Query: 309 TVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFF 368
VN QIS LGQ ELEGKR + M+SG+TLP F +E SP AGG+V RF+TG+ P E+F
Sbjct: 766 IVNLSQISGSLGQQELEGKRVSYMISGKTLPCFERFETSPSAGGYVFQRFLTGVNPSEYF 825
Query: 369 FHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
FHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGL V YD++VR +IQ YGEDGLD
Sbjct: 826 FHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLRVEYDLSVR-MGTKIIQYTYGEDGLD 884
Query: 429 VTKRQYLTDKQFSFLEDN 446
TK +L KQ F ++N
Sbjct: 885 CTKSSFL--KQIEFFKNN 900
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 75/119 (63%), Gaps = 17/119 (14%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
+L +PGE VGV+A QS+GEPSTQMTLNTFH AG G NVTLGIPRLREI+M+A K I+TP
Sbjct: 945 ALVDPGEAVGVIAGQSVGEPSTQMTLNTFHLAGVGARNVTLGIPRLREIVMVAAKKIQTP 1004
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLE--ISPEPHMNYQMKFC 686
+ +P + ++ EK D+ EK+ + E + + E ++ Q ++C
Sbjct: 1005 LIYVPLIKEVST-EK--------------LDIFEKITLDECISEILISEKMVSKQGRYC 1048
>gi|320581578|gb|EFW95798.1| DNA-directed RNA polymerase III subunit, putative [Ogataea
parapolymorpha DL-1]
Length = 1469
Score = 318 bits (816), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 289/1028 (28%), Positives = 467/1028 (45%), Gaps = 137/1028 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMN-LVYQALCI 71
+AEA LM V + L PK G P+ QD + +S +D+F RA + L +
Sbjct: 526 RAEAMNLMGVKNNLLTPKSGEPIIAATQDFITGSYLISNKDSFYDRATFTQMLAMMSDGA 585
Query: 72 LNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQ--FGST 129
L+ +I PP I+KP +WTGKQ+ S ++I + KV+I LD K F
Sbjct: 586 LHVDIP--PPAIFKPAFMWTGKQLFS-LLIRPNRQSKVVIN--------LDAKNKTFVPP 634
Query: 130 QYGLVHAVW--DTHVTIRHGELLSGILDKKQFG-STQYGLVHAVWDTHGAEHAISLLSCL 186
G+ + D V IR+ ++LSG++DK G ++ + + + +GA+ A + ++ +
Sbjct: 635 PPGMPSEMSPNDGFVVIRNSQILSGVMDKSTLGDGKKHSVFYTILRDYGADEAANAMNRM 694
Query: 187 AKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEII 246
AKL YL GF++G+ D+ + ++ +++ A R E L+T P
Sbjct: 695 AKLCARYLGNRGFSIGINDVTPGENLKNRKEQLVEIAYRKCDELITLFKTGKLETQPGCN 754
Query: 247 SSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAK 306
Q EA + LL KV + +VC+ E +N M G+K
Sbjct: 755 EEQTLEA-------------KIGGLLSKVREEVGEVCIKE----LDKSNAPLIMATCGSK 797
Query: 307 GSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQE 366
GST+N Q+ ++GQ + G R R+LP FL SP++ GFV F +G+ P E
Sbjct: 798 GSTLNVSQMVAVVGQQIISGHRVPDGFQDRSLPHFLKNSKSPQSKGFVRNSFFSGLSPPE 857
Query: 367 FFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDG 426
F FH ++GREGL+DTAVKT+ +GY R L+K +E L+ YD TVR+S ++Q YG DG
Sbjct: 858 FLFHAISGREGLVDTAVKTAETGYTSRRLMKSMEDLSAGYDETVRNSSNGIVQFNYGGDG 917
Query: 427 LDVTKRQYLTDKQFSFLEDNIKWICSYKVILN-----LLKKHPLSLALLLLLTFKSS--- 478
LD + + +F N W ++ V L+ L L +A +L K
Sbjct: 918 LDPLDMEG-DARPVNF---NRTWDHAFHVTLDHHEQGLYPYEALRIADSVLQPLKDRLVR 973
Query: 479 ----GKPNFIFSPHRTKFT--MDLLEQWYQ-----LDDKARKKYRKKFKACPQPLISTFQ 527
G+P + ++ D +Y ++ K R R + + PL+
Sbjct: 974 VDNLGRPLAGRDAEKIEYVDRHDAERDFYSSIRAYIETKCRSIARLREQRGLDPLLEA-- 1031
Query: 528 PDAHFGSISENLAD---SVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQ 584
P+A G + ++D V + S + +F + +K L + PG VG + A
Sbjct: 1032 PEASEGPGTRPVSDPERERVVTQLAKVSESMIREFLRLCLHKYLKAKVEPGTAVGAIGAH 1091
Query: 585 SIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEK 644
SIGEP TQMTL TFHFAG MNVTLG+PR++EI+ A+K I TP + + D ++
Sbjct: 1092 SIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII-NASKVISTPIINAVLVNDE---DE 1147
Query: 645 KANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKI 704
+A R+ K T +LE V F +Y++ + KI
Sbjct: 1148 RAARVVKGRIEKT---ILEDV--------------------AFFIEDVYKENQAYLQVKI 1184
Query: 705 IDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRVDV 764
H + +LE+ I + A+ + ++ SR + A R+ V
Sbjct: 1185 DLHTIERL--QLELTIDQIASAIVDAPKLKISRGDV--------------AIVGKNRIQV 1228
Query: 765 SSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNTSNIGERFKIEFRDSTN 824
E +E ++ + + E + ++ ++ ER+ ER +++ R + R T
Sbjct: 1229 FVSETGNETG--KTARTASSRESSVVKDADERERL-ER------TSLFFRMQQLRRVLTK 1279
Query: 825 VFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNLFEEKESKHLLKTDGINVNFISQYRH 884
V VK + + V D K + L E K ++ TDG+ V ++ H
Sbjct: 1280 VVVKGLPDISRAVINVKDDGKKEL----------LVEGYGLKAVMATDGV-VAHRTKTNH 1328
Query: 885 LLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGT 944
+L++ GIEAA II E+ +G+ VDPRH+ L+ D MT+ G
Sbjct: 1329 VLEI-----------FDVLGIEAARASIISEIDYTMGSHGMAVDPRHIQLLGDVMTYKGE 1377
Query: 945 YVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGL 1003
+ + R G+ ++ S +Q +FE + + A+ ++D + S R++LGQ GTG
Sbjct: 1378 VLGITRFGLAKMRDSVLQLASFEKTTDHLFDAAFYMKKDLVEGVSERIILGQTMSIGTGA 1437
Query: 1004 FQLRNREK 1011
F+L + K
Sbjct: 1438 FKLAAQSK 1445
>gi|357475409|ref|XP_003607990.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
gi|355509045|gb|AES90187.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
Length = 1628
Score = 318 bits (815), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 193/475 (40%), Positives = 276/475 (58%), Gaps = 45/475 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVY------ 66
+AEA ++N ++QY+ P G P+ LIQDH++S A L+ +DTFL+ E+ L+Y
Sbjct: 587 RAEAYNIVNANNQYVKPTSGDPIRALIQDHIVSAALLTKKDTFLSCQEFNQLLYSSGVSM 646
Query: 67 -----------QALCILNTE--IRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDK--VII 111
Q + + N+E + PP I+KP PLWTGKQV+S ++ +T +
Sbjct: 647 TGMGSFSCKPGQKVLMSNSESEMFLFPPAIFKPEPLWTGKQVISALLCYITKGRPPFTVE 706
Query: 112 RHGELLSGILDKKQFGSTQYGLVHA-VWDTH---------VTIRHGELLSGILDKKQFGS 161
++ ++ S F TQ G + DT + I +L+ G++DK QFG
Sbjct: 707 KNAKIPS------SFFKTQTGEIKKHTKDTSRKKDELEDKLLIYRNDLVRGVVDKAQFG- 759
Query: 162 TQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIIN 221
YG+VH V + +G+ A LLS L++LFT +LQ GFT GV D+L++ +D +R +
Sbjct: 760 -DYGMVHTVQEFYGSNTAGILLSALSRLFTNFLQMHGFTCGVDDLLIKVGKDSERLNQLE 818
Query: 222 KARRLGTEAACNALGLPLDTDPEIISSQLQEAYASIPQFRAQI---DRQYKSLLD-KVTN 277
+G +G+ + + I+ QL A I DR+ S L+ + ++
Sbjct: 819 SCEEIGDIVHREFIGVMESENIDPITMQLNVEKKIRSNGEAAITYLDRKMISNLNSRTSS 878
Query: 278 NINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRT 337
+ + L +G ++P N + M SGAKGS VN QIS LGQ ELEGKR MVSG+T
Sbjct: 879 GVLKELLSKGSLKPSGKNWISLMTTSGAKGSMVNFQQISSHLGQQELEGKRVPRMVSGKT 938
Query: 338 LPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVK 397
LP F ++ SPRAGGF+ RF+T ++PQE++FHCMAGREGL+DTAVKTSRSGYLQRCL+K
Sbjct: 939 LPCFPSWDCSPRAGGFIIDRFLTALRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMK 998
Query: 398 HLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICS 452
+LE L V YD TVRDSD S+IQ YGEDG+DV + ++ +F L N + I S
Sbjct: 999 NLESLKVCYDHTVRDSDGSIIQFHYGEDGVDVHQTSFIN--KFEALSINKELIYS 1051
Score = 225 bits (574), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 187/574 (32%), Positives = 262/574 (45%), Gaps = 114/574 (19%)
Query: 528 PDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIG 587
PDA G +EN + + D F ++ +K + SLA PGE VGVLA+QS+G
Sbjct: 1068 PDALKGK-AENFIRDFSSKQRNSSSMKEAD-FLQVMEHKYVSSLAQPGEPVGVLASQSVG 1125
Query: 588 EPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKAN 647
EP+TQMTLNTFH AGRG+MNVTLGIPRL EI++ A+K IKTP M P P+ K + A
Sbjct: 1126 EPATQMTLNTFHLAGRGEMNVTLGIPRLHEIVVAASKNIKTPFMTCPLRPN--KSMEDAI 1183
Query: 648 RLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCFI---------PAHMYRDKTS 698
RLA M +IT+AD++E +K+ S P + + C I P H Y T
Sbjct: 1184 RLADKMKKITVADIIESMKV------SVVPVAVKEGRICSIYKLTMKLHKPKH-YPKYTD 1236
Query: 699 VKPSKIIDHFERKFLKELEVAI------------------AKRAAQGLKNMNIEQS---- 736
V + F++ELE AI ++ GL N + +S
Sbjct: 1237 VTLEDWEETLRVGFVRELEDAIENHISLLARISGIKDFQGKSNSSNGLDNDHSNESASNQ 1296
Query: 737 RDQMEDDVEDDEGEGAEGAG--------AALGRVDVSSDEERD------EEDAVQSHKKV 782
Q +DD E + E AE G A VD E + ED S
Sbjct: 1297 NGQTDDDDEVGDTEDAEEDGFDAQKSKQRATDEVDYDDGPEEETHDGEKSEDVEVSEDGK 1356
Query: 783 NQEEDNDFEEPEDEERMSEREEDDNTS--------------------------NIGERFK 816
+ E+DN E D+ + + D N + G RF+
Sbjct: 1357 DDEDDNGVEVNGDDSDIEVNDSDKNVTLEETSKSKKRKFEPASKKYDRRVYVKAGGMRFE 1416
Query: 817 IEF---------------RDSTNVFV---------KDVVNQHNIVHKYSYDKKNHMWCKL 852
I F R + V + K + + + V Y D K
Sbjct: 1417 IHFKFIGEPHILLAQIAQRTAEKVCIQNFGKVGQCKAITCKESGVIYYGEDDS-----KR 1471
Query: 853 LFLPSNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVI 912
+PS++ KE L+T GI+ + L + +Y ND+H + YG+EAA VI
Sbjct: 1472 DDIPSSV---KEKIPALQTSGIHFKTFWEMEDDLKVRYVYSNDVHAILKAYGVEAAKEVI 1528
Query: 913 IREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKI 972
IREV+NVF YGI V+ RHL L+AD+MTHSG+Y + R+GI + S K+++E I
Sbjct: 1529 IREVQNVFKSYGISVNIRHLMLIADFMTHSGSYRPLTRSGIADSTSPFVKISYETASNFI 1588
Query: 973 RQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+A+ G+ D+L PS+R+ LG + GTG L
Sbjct: 1589 VEAARHGQVDTLETPSSRICLGLPVKMGTGCIDL 1622
>gi|113817932|gb|AAH17115.2| POLR1A protein [Homo sapiens]
Length = 574
Score = 317 bits (812), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 214/583 (36%), Positives = 308/583 (52%), Gaps = 111/583 (19%)
Query: 523 ISTFQPDAHFGSISENLADSVVKYTK---GRTDASH------VDKFYDMIFYKNLLSLAN 573
+S ++PD +F S+SE V Y++ +T+ S+ +D+ ++ K SL
Sbjct: 1 LSVWRPDIYFASVSETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCE 60
Query: 574 PGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEI 633
PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVTLGIPRLREILM+A+ IKTP M +
Sbjct: 61 PGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSV 120
Query: 634 PFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKE--WLEISPEPHMNYQMKFCFIPAH 691
P L + K K+ L K +TR+ + +VL+K+ ++E +E YQ++F F+P
Sbjct: 121 PVL-NTKKALKRVKSLKKQLTRVCLGEVLQKIDVQESFCMEEKQNKFQVYQLRFQFLPHA 179
Query: 692 MYRDKTSVKPSKIIDHFERKFLKELEVAIAKR--AAQGLKNMNIEQSRDQMEDDVEDDEG 749
Y+ + ++P I+ E +F K L +I K+ A +N+N +R + D+ D+ G
Sbjct: 180 YYQQEKCLRPEDILRFMETRFFKLLMESIKKKNNKASAFRNVN---TRRATQRDL-DNAG 235
Query: 750 EGAEGAGAALGR---------------VDVSSDE-ERDEEDAVQSHKKVN---------- 783
E LGR VD ++E + D DA + K+
Sbjct: 236 E--------LGRSRGEQEGDEEEEGHIVDAEAEEGDADASDAKRKEKQEEEVDYESEEEE 287
Query: 784 ------------QEEDNDFEE------PEDEERMSEREEDDNTSNIGERFK-------IE 818
QEE N E +DEE EED + + + + +
Sbjct: 288 EREGEENDDEDMQEERNPHREGARKTQEQDEEVGLGTEEDPSLPALLTQPRKPTHSQEPQ 347
Query: 819 FRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC---------KLLFLPSNLF--------- 860
++ V+ V H + Y YD + +WC K+ F S+L
Sbjct: 348 GPEAMERRVQAVREIHPFIDDYQYDTEESLWCQVTVKLPLMKINFDMSSLVVSLAHGAVI 407
Query: 861 ----------------EEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYG 904
+ E + +L T+GIN+ + +Y +LDL +LY NDIH +A+TYG
Sbjct: 408 YATKGITRCLLNETTNNKNEKELVLNTEGINLPELFKYAEVLDLRRLYSNDIHAIANTYG 467
Query: 905 IEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMT 964
IEAA RVI +E+K+VFAVYGI VDPRHLSLVADYM G Y +NR GIR N S +Q+MT
Sbjct: 468 IEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIRSNSSPLQQMT 527
Query: 965 FEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLR 1007
FE + ++QA+M G D LR+PSA +++G+ R GTGLF+L+
Sbjct: 528 FETSFQFLKQATMLGSHDELRSPSACLVVGKVVRGGTGLFELK 570
>gi|154334991|ref|XP_001563742.1| putative DNA-directed rna polymerase I largest subunit [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|134060764|emb|CAM37779.1| putative DNA-directed rna polymerase I largest subunit [Leishmania
braziliensis MHOM/BR/75/M2904]
Length = 1814
Score = 314 bits (805), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 229/695 (32%), Positives = 346/695 (49%), Gaps = 89/695 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM+ + YLVP G P+ G IQDHV++G L+LRD FL ++ VY +
Sbjct: 674 RAELECLMDANLNYLVPTSGKPIRGFIQDHVVAGVLLTLRDKFLPHHTFVQFVYNGIAPY 733
Query: 73 -----------NTEIRTLP-PTIWKPMPLWTGKQVLSTVIINLTP---------KDKVII 111
T +P P + KP PLWTGKQ++S ++ +T K +
Sbjct: 734 MQKHGNPLSPNATLTELIPMPAVLKPHPLWTGKQLISAIVRYVTGVVESRGGTRKSNGVS 793
Query: 112 RHGELLSGILDKKQFGST--QYG-LVHA----VWDTHVTIRHGELLSGILDKKQFGSTQY 164
HG + ++ + +T G LV A + D HV EL++GIL K Q GS
Sbjct: 794 MHG---TSLIQPNTYTTTDPHTGELVSASRKCMEDGHVQFFESELITGILCKNQLGSCNL 850
Query: 165 GLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKAR 224
+VH + + +G L L ++ ++ LQR GF++G+ D+++ QE +RT ++
Sbjct: 851 SVVHVIHEIYGPHMVGVLFGALGRVLSMSLQREGFSIGMDDMILLQEE--RRTALLR--- 905
Query: 225 RLGTEAACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCL 284
+L A S+P A++ ++ + N+ + +
Sbjct: 906 ------------------------ELDNAPLSLPDDEARV----MPVIMGMATNLQKEFV 937
Query: 285 PEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPY 344
P ++ PFP N L M SGAKGS N +Q+S LGQ +G+R M SG+TLPSF
Sbjct: 938 PGRMLRPFPQNQLLTMTMSGAKGSNTNAIQMSLGLGQQLFDGRRVKRMNSGKTLPSFFVA 997
Query: 345 EVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTV 404
E R+ G+ GRF +GI+P E+ FH MAGR+GLIDTAVKTSRSG+LQRCLVK LE L V
Sbjct: 998 EKRARSLGYAIGRFTSGIRPAEYTFHAMAGRDGLIDTAVKTSRSGHLQRCLVKGLESLVV 1057
Query: 405 HYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDN-IKWICSYKVILNLLKKH 463
+D +VRD++ S+IQ LYG DGLD + L + + ++DN + V ++
Sbjct: 1058 QWDHSVRDANGSVIQFLYGGDGLDPMRTSSL--QAWEVVKDNCVDLGRKMNVSTGVMTGE 1115
Query: 464 PLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDD-----KARKKYRKKFKAC 518
+ A L S + + + LLE Q D KA + KA
Sbjct: 1116 EEAEAAALRNNHGSKRERAYETAAAMRAAQRALLEAEAQRDPLPAHYKASLDTYLETKA- 1174
Query: 519 PQPL---ISTFQPDAHFGSISENL---ADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLA 572
PL +S A G +SE L + ++Y + D ++ + + +
Sbjct: 1175 QYPLFKKVSQVARWAKNGVLSEKLREKREESIRYYR--------DVMTELTTRRRVRAYC 1226
Query: 573 NPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSME 632
+ GE VG+LAAQ+ GEPSTQMTLNTFH AG +VT GIPRLRE+L+ A+ ++ ++
Sbjct: 1227 DAGEPVGLLAAQAAGEPSTQMTLNTFHSAGSTVTHVTEGIPRLRELLIYAS--VQKVAIV 1284
Query: 633 IPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKI 667
+P E+ +R+ ++ + D + +V +
Sbjct: 1285 VPVEKATETDEEAISRILQAGVATRLTDCMARVPV 1319
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 61/114 (53%), Gaps = 3/114 (2%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNG- 952
DI M +++G+E+ + + E++ +F Y VD HL+L+AD TH G + N G
Sbjct: 1687 TDIRDMCTSFGVESGYKALFDELEKLFKRY--SVDYHHLTLIADAATHRGIWENYNFTGV 1744
Query: 953 IRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
I + S + +MTF + A +G D L + S+ +M+G+ R GT L ++
Sbjct: 1745 ISHSASPLFQMTFASSKRFLHTALTRGISDELSSISSAIMVGERPRVGTALVKV 1798
>gi|520517|gb|AAA50229.1| RNA polymerase II, largest subunit, partial [Ilyanassa obsoleta]
Length = 1343
Score = 309 bits (791), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 298/997 (29%), Positives = 450/997 (45%), Gaps = 145/997 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + P+ P+ G++QD + + K++ RD FLTRA+ M+L L L
Sbjct: 426 RAEIMNLCAVPRMIITPQANRPVMGIVQDTLTAVRKMTKRDVFLTRAQMMHL----LMFL 481
Query: 73 NTEIRTLP-PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQY 131
T +P P I KP PLWTGKQ+ S VI P +IR D +
Sbjct: 482 PTWDGRMPQPAIIKPEPLWTGKQIFSLVI----PGRVNVIRTHSTHPDGEDSGPYKWISP 537
Query: 132 GLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFT 191
G DT V I GEL+SGIL KK G++ LVH V+ G E A L + +
Sbjct: 538 G------DTKVLIEDGELISGILCKKTLGTSAGSLVHIVFLEMGFEVAGELYGNIQTVVN 591
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQ 251
+L G ++G+ D + Q+ + + I KA+ E A L+ P + L+
Sbjct: 592 NWLLIEGHSIGIGDTIADQQTYHEIQETIRKAKADVIEVIEKAHNDELEPTP---GNTLR 648
Query: 252 EAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVN 311
+ F Q++R DK T + Q L E NN + MV +G+KGS +N
Sbjct: 649 QT------FENQVNRILNDARDK-TGSKAQKSLSE-------FNNFKAMVVAGSKGSKIN 694
Query: 312 TMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHC 371
Q+ +GQ EGKR RTLP F+ + P + GFV+ ++ G+ P EF+FH
Sbjct: 695 ISQVIACVGQQNAEGKRIPFGFRYRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHA 754
Query: 372 MAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTK 431
M GREGLIDTAVKT+ +GY+QR L+K +E + V YD TVR+ L+Q+ YGEDGLD
Sbjct: 755 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVKYDGTVRNQVEQLVQLGYGEDGLDACH 814
Query: 432 RQYLT-----------DKQFSF---LEDNIKWICSYKVILNLLKKHPLSLAL----LLLL 473
++ + ++QF F E +K VI L +H L L L L+
Sbjct: 815 VEFQSLPTLKPSTRAFERQFRFDPTDERMMKRCLKEDVIKGLRGEHRLIEELESEWLQLI 874
Query: 474 TFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFG 533
+ + S + F R +L + R RK P ++S +
Sbjct: 875 SDRDSARQVFSTGDARIVLPCNLQRMIWNAQKIFRIDKRKPSDLDPINVVSGVRDLCQRL 934
Query: 534 SISEN--------------LADSVVKYTKGRTDASHVDKFYDMIFYKNLLSL-------- 571
+I E L +++ T + + + F L +
Sbjct: 935 TIVEGEDMISKQANENATLLMKCLIRSTLCAKRVAEEHRLSEDAFNWLLGEIETRFQQAQ 994
Query: 572 ANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSM 631
A+PGE VG LAAQS+GEP+TQMTLNTFH+AG NVTLG+PRL+EI+ ++ K KTPS+
Sbjct: 995 AHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKKP-KTPSL 1053
Query: 632 EI----PFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCF 687
+ P D K + RL + L KV + P+P MN
Sbjct: 1054 TVYLNGPAARDAEKCKDVLCRLEHT--------TLRKVTANTAIYYDPDP-MN------- 1097
Query: 688 IPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDD 747
+ D+ V + F+ A R + L + IE R +M D
Sbjct: 1098 --TVIVEDQEWVSIYYEMPDFD-----------ASRISPWL--LRIELDRKRMTDKKLTM 1142
Query: 748 EGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDN 807
E + +E A G D++ D + + ++ +D+ +DEE + ++ EDD
Sbjct: 1143 E-QISEKITAGFGD-DLNCIFNDDNAEKLVLRIRIMNSDDSKM---QDEEEVVDKMEDD- 1196
Query: 808 TSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPS-------NLF 860
VF++ + + N++ + + + LP+ ++
Sbjct: 1197 -----------------VFLRCI--ESNLLSDMTLQGIEAIAKVYMHLPTTDDKKRIHIT 1237
Query: 861 EEKESKH----LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREV 916
EE E K +L+TDG ++ + R +D + Y NDI + +T GIEA + I RE+
Sbjct: 1238 EEGEFKAVAEWILETDGSSLMKVLSERD-VDPVRTYTNDIVEVFATLGIEAVRKAIEREM 1296
Query: 917 KNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
+V + G V+ RHL+L+ D MT G +A+ R+GI
Sbjct: 1297 VHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGI 1333
>gi|50309797|ref|XP_454912.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644047|emb|CAG99999.1| KLLA0E21253p [Kluyveromyces lactis]
Length = 1457
Score = 306 bits (784), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 287/1042 (27%), Positives = 446/1042 (42%), Gaps = 187/1042 (17%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + L PK G P+ QD + +S +D+F RA+ L+ +
Sbjct: 526 RAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRAQLTQLL-SMMSDS 584
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLS---------TVIINLTPKDKVIIRHGELLSGILDK 123
N + PP+I KP LWTGKQV S V+INL K+KV + K
Sbjct: 585 NLQFDIPPPSIMKPHYLWTGKQVFSLLIKPSRKSPVVINLDAKNKVYLPP--------PK 636
Query: 124 KQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFG-STQYGLVHAVWDTHGAEHAISL 182
K++ + + D V IR +LSG++DK G ++ + + + +G A
Sbjct: 637 KEYPNEM-----SQNDGFVLIRGSNILSGVMDKSVLGDGKKHSVFYTILRDYGPNEAAQA 691
Query: 183 LSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNAL-----GL 237
++ +AKL YL GF++G+ D+ + +K+ +++ A A C+ L
Sbjct: 692 MNRMAKLCARYLGNRGFSIGINDVTPGSDLKQKKEQMVESAY-----AKCDELIDLFNKG 746
Query: 238 PLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPE--GLIEPFPAN 295
L+T P Q EA + LL KV + +VC+ E L P
Sbjct: 747 KLETQPGCNEEQTLEA-------------KIGGLLSKVREEVGEVCIRELDNLNAPL--- 790
Query: 296 NLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVD 355
M G+KGST+N Q+ ++GQ + G R R+LP F +P++ GFV
Sbjct: 791 ---IMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTPQSKGFVR 847
Query: 356 GRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDL 415
F +G+ P EF FH ++GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR S
Sbjct: 848 NSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTSSN 907
Query: 416 SLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTF 475
++Q YG DGLD + + +F N W + + LN P LL +
Sbjct: 908 GIVQFTYGGDGLDPLDMEG-NAQPVNF---NRSWTHANNLTLN--DNSP------GLLPY 955
Query: 476 KSSGKPNFIFSPHRTKFT-MDLLEQWYQLDDKARKKYRKKFKA----------------- 517
+ + N I P K D + Q + +D+ + +Y +F A
Sbjct: 956 QIIAETNVILQPLENKLKRYDNIGQELRKEDEHKDEYIDQFDAERSFYQSLREFMTEKAL 1015
Query: 518 ---------CPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASH--VDKFYDMIFYK 566
+ L+ + + EN+ S+ S V KF + K
Sbjct: 1016 TLASLRGERGLKELVDEPAEELREFNWDENVPASITIALNQLCKISKILVQKFLSIAISK 1075
Query: 567 NLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAI 626
+ PG VG + AQSIGEP TQMTL TFHFAG MNVTLG+PR++EI+ A+K I
Sbjct: 1076 YHRARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII-NASKVI 1134
Query: 627 KTPSMEIPFLPDMPKLEKKANRLAKSMTRIT-MADVLEKVKIKEWLEISPEPHMNYQMKF 685
TP + + D +++A R+ K T ++DV
Sbjct: 1135 STPIINAVLVNDN---DERAARVVKGRVEKTLLSDV------------------------ 1167
Query: 686 CFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVE 745
F +YRD + L++ I + L Q+E +E
Sbjct: 1168 SFYVQDIYRDNMAF----------------LQIKIDSETIEKL----------QLELTLE 1201
Query: 746 DDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREED 805
D A+ +G D+S + AV S K + +EPE E
Sbjct: 1202 DIVVAIAKAPKLKIGTNDISIIGKDKINIAVSSDGKSMKSISTAMKEPEPNE-------- 1253
Query: 806 DNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNLFEEKES 865
+ R + R ++ VK + V D K + L E
Sbjct: 1254 -----VFYRMQQLRRALPHIVVKGFSDISRAVINIRDDGKREL----------LVEGYGL 1298
Query: 866 KHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 925
+ ++ TDG+ + ++ H+L+ V D+ GIEAA II E+ + +G+
Sbjct: 1299 RDVMTTDGV-IGSKTKTNHILE-----VYDV------LGIEAARSCIINEIDYTMSNHGM 1346
Query: 926 EVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSL 984
VDPRH+ L+ D MT+ G + + R G+ ++ S +Q +FE + + A+ + D++
Sbjct: 1347 SVDPRHIQLLGDVMTYKGEVLGITRFGLAKMRDSVLQLASFEKTTDHLFDAAFYMKNDAV 1406
Query: 985 RAPSARVMLGQECRQGTGLFQL 1006
S ++LGQ GTG F++
Sbjct: 1407 EGVSECIILGQTMSIGTGSFKV 1428
>gi|223992753|ref|XP_002286060.1| DNA directed RNA polymerase II, largest subunit [Thalassiosira
pseudonana CCMP1335]
gi|220977375|gb|EED95701.1| DNA directed RNA polymerase II, largest subunit [Thalassiosira
pseudonana CCMP1335]
Length = 1627
Score = 304 bits (779), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 286/1071 (26%), Positives = 483/1071 (45%), Gaps = 161/1071 (15%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA +M+ + + P+ G++QD +++ K++ RD F+ + MN++ + +
Sbjct: 503 RAEAELMMHSPRVIVSGQSNRPVMGIVQDSLLAVQKMTKRDVFVKKDLMMNIL---MWVE 559
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVI--INLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ + R PP I++P LWTGKQ++S ++ INLT G+ +G F +
Sbjct: 560 DWDGRIPPPAIYRPEELWTGKQIMSMILPKINLT---------GKANNGGPGPNTFNA-- 608
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLF 190
+D V + GEL+ G +DKK GS GL+H W G E ++ +
Sbjct: 609 -------YDNLVRVMEGELIEGTIDKKTIGSGMGGLIHTAWLDVGHEDTARFMNQTQVVT 661
Query: 191 TVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQL 250
++ + F++GV D + + INKA+ + L+T P
Sbjct: 662 NYWVLQSSFSIGVCDTIADFATMEQIASTINKAKLQVLDLVRQGQRGELETQP------- 714
Query: 251 QEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTV 310
I F +++ + D + Q L E N+++ MV +G+KGS +
Sbjct: 715 --GRTMIESFEQFVNKVLNTARDHAGKSA-QASLDE-------TNSVKAMVTAGSKGSFI 764
Query: 311 NTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFH 370
N QI +GQ +EG R RTLP F ++ P + GFV+ +++G+ PQEFFFH
Sbjct: 765 NISQIIACVGQQNVEGNRIPYGFKRRTLPHFSKDDLGPESRGFVENSYLSGLTPQEFFFH 824
Query: 371 CMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGE------ 424
M GREGLIDTA KT+ +GY+QR LVK +E + YD T+R S ++Q LYGE
Sbjct: 825 AMGGREGLIDTACKTAETGYIQRRLVKAMETVMARYDGTLRTSGGQIVQFLYGEDGMDAV 884
Query: 425 -------DGLDVTKRQY--------------LTDKQFSFLEDNIKWICSYKVILNLLKKH 463
D L + KR++ D+ FLE + C + + +
Sbjct: 885 WIERQSFDSLTLNKREFDERYLLHSDDPDFGYDDQNIPFLEAEVIEDCRHNPEVQQMLDR 944
Query: 464 PLSL------ALLLLLTFKSSGKPNFI--FSPHRTKFTMDLLEQWYQLD-----DKARKK 510
+ + L +++ + +G+ + + ++P K + + +Q+D + K
Sbjct: 945 EMEVLKEDQAMLRIIMANREAGRESDVNSYAPGNVKRVIQNALRQFQIDKGLPSNLHPKD 1004
Query: 511 YRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLS 570
+K +A + L+ D N + + V + Y + +
Sbjct: 1005 VIEKIEAMLRRLVVVVGDDLLSVEAQNNATTLYRILIRSYLASKRVLREYRLSEAALIWV 1064
Query: 571 LA-----------NPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREIL 619
L +PGE GVLAAQSIGEP+TQMTLNTFH+AG NVTLG+PRL+EI+
Sbjct: 1065 LGEIEARFHHAKVSPGEMAGVLAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEII 1124
Query: 620 MMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHM 679
+A K +KTP + I +L + + +L SM T+ L K+ EI +P
Sbjct: 1125 NVA-KTVKTPGLTI-YLQNHVSGDADVAKLVHSMIEYTVLTDLTKLT-----EIYYDP-- 1175
Query: 680 NYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMN-----IE 734
P I +R+F+KE + + + L+ ++ IE
Sbjct: 1176 --------------------DPVNTIVAKDREFVKEY-YEMGEETEEDLRRLSPWVLRIE 1214
Query: 735 QSRDQMED---DVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFE 791
++ M D + + E A G+ L V VS D + +D V + VN D
Sbjct: 1215 LNQVVMVDKKIKMNEIAAEIANEYGSDLN-VLVSDD---NADDLVARIRIVN---DLPMV 1267
Query: 792 EPEDEERMSEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCK 851
+ DE+ +DD +E +VF+K + + N++H + + K
Sbjct: 1268 QGMDEDGNPIMTDDD----------VELGQEDDVFLKRL--EKNMLHTLKLRGVDDV--K 1313
Query: 852 LLFL----PSNLFEEKES-----KHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMAST 902
+F+ ++++++ + +L+TDG N+ + + +D + NDI +
Sbjct: 1314 KVFMRGGAKKTVWDDEKGFGITDEWVLETDGTNLMSVLGIDY-VDATRTISNDIVEVFMV 1372
Query: 903 YGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQ 961
GIE I+ E++NV + G V+ RHL+ + D MT G +A++R+GI R+ +
Sbjct: 1373 LGIEGVRAAILSELRNVISFDGSYVNYRHLACLVDVMTMHGHLMAVDRHGINRVESGPLL 1432
Query: 962 KMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNREKK 1012
+ +FE ++ + A+ E+ LR + +M+GQ R GTG L E+K
Sbjct: 1433 RCSFEETVDMLNDAACFAEEEVLRGVTENIMMGQLARVGTGDMDLLLDEQK 1483
>gi|449328924|gb|AGE95199.1| DNA-directed RNA polymerase I [Encephalitozoon cuniculi]
Length = 1395
Score = 297 bits (761), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 166/433 (38%), Positives = 250/433 (57%), Gaps = 39/433 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE+ ++ S YLVP +G P+ GL+QDH++ L+++D+F + +Y LV L
Sbjct: 507 EAESRHIVMNDSNYLVPTNGKPIRGLVQDHIVIVTVLTMKDSFFSEEDYFTLVNAGLS-- 564
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ I P I KP L++GKQV+ST++ NL L+ I +
Sbjct: 565 DRRIVLDRPCIVKPARLYSGKQVISTILKNLG-----------LVVNI-------EIETN 606
Query: 133 LVHAVWDTH-----VTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
+ W H + IR G +++GILDK G T L+HA + G + LL+ +
Sbjct: 607 VPKNAWREHSEERILRIREGNIVTGILDKNSLGPTFKSLIHACGEIKGFATSNDLLTYIG 666
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIIS 247
+ YL GFT+G+ D+L+ +E D+KR +++ R+ + A ++ +P+
Sbjct: 667 WVGNRYLLMYGFTIGIDDLLLDKEADKKRREVV----RVKDQEAKELQRRYVEANPDFYL 722
Query: 248 SQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKG 307
++AY +D ++ ++ VT+ I +V +P GL + FP NN++ ++ +G+KG
Sbjct: 723 YADKKAY---------LDSVMRTEMNSVTSEIVKVSVPSGLQKSFPENNMELIIATGSKG 773
Query: 308 STVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEF 367
S VN QIS LGQ ELEG+R +M SG+TLP F + SP +GG++ RF+TGI ++
Sbjct: 774 SIVNLSQISGALGQQELEGQRVPIMASGKTLPCFAALDPSPSSGGYIYHRFLTGIDLPQY 833
Query: 368 FFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL 427
FFHCMAGREGLIDTA+KT+ SGYLQRCL+KH+E V YDM+VR +IQ +YGEDGL
Sbjct: 834 FFHCMAGREGLIDTAIKTANSGYLQRCLIKHMEEAKVEYDMSVRIGK-RVIQFMYGEDGL 892
Query: 428 DVTKRQYLTDKQF 440
D TK YL D +F
Sbjct: 893 DCTKSSYLDDAEF 905
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 153/459 (33%), Positives = 232/459 (50%), Gaps = 48/459 (10%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
+ SLA+PGE+VGV+AAQS+GEPSTQMTLNTFH AG G NVTLG+PRLREIL+ A+K+I+
Sbjct: 955 ICSLADPGESVGVIAAQSVGEPSTQMTLNTFHLAGVGAKNVTLGVPRLREILITASKSIR 1014
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCF 687
TP + +P + + + + + R+T+ D +++ + E + + ++K F
Sbjct: 1015 TPLITVPI------KRRVSFDITECLRRVTLKDCVKRFGVTEEI-VMVSGVFQKKVKIMF 1067
Query: 688 IPAHMYRDKTSVKPSKIIDHFERKFLKEL------------EVAIAKRAAQGLKNMNIEQ 735
D +++D RKFLK L + +++ K ++ E
Sbjct: 1068 -----ELDNFVDLAGEVLD---RKFLKLLGNKMKGLAKAKYTLGMSEAPKDDCKEVD-EN 1118
Query: 736 SRDQMEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEED-----NDF 790
++ ED+ + D+ EG L + ++D ED S+ + E D D
Sbjct: 1119 KENEGEDESDSDKESDPEGDNVCL-EATTGENGDKDSEDHSTSYLEATDETDQTDDSGDT 1177
Query: 791 EEPEDEERMSEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC 850
EE ED +++ ++ T F+I + N + VV +I+ + M
Sbjct: 1178 EEEEDFMNFAKKSKNVLT------FEILYPSGFNEVISSVV--ESILPTIVVREVKGME- 1228
Query: 851 KLLFLPSNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLY---VNDIHYMASTYGIEA 907
K S LF + S + L T I V+ Y LLD+ +Y NDI+ + T G+EA
Sbjct: 1229 KASVSGSQLFVKSSSIYSL-TRMIEVS-PGVYEDLLDILDIYNAESNDIYGVYLTLGVEA 1286
Query: 908 ANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEM 967
A II EV VF VYGI +D RHL L+ADYMT G+Y +R+G+ + S IQ+++FE
Sbjct: 1287 ARHAIINEVVKVFDVYGISIDIRHLLLIADYMTRKGSYSPFSRHGLGADDSPIQRISFES 1346
Query: 968 PLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+ A+ ED L PSA + +G R GTG F L
Sbjct: 1347 CYSNFKTAATFHLEDKLSNPSASLTVGNPVRCGTGCFDL 1385
>gi|19074219|ref|NP_584825.1| DNA-DIRECTED RNA POLYMERASE I [Encephalitozoon cuniculi GB-M1]
gi|19068861|emb|CAD25329.1| DNA-DIRECTED RNA POLYMERASE I [Encephalitozoon cuniculi GB-M1]
Length = 1395
Score = 296 bits (759), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 165/433 (38%), Positives = 250/433 (57%), Gaps = 39/433 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE+ ++ S YLVP +G P+ GL+QDH++ L+++D+F + +Y LV L
Sbjct: 507 EAESRHIVMNDSNYLVPTNGKPIRGLVQDHIVIVTVLTMKDSFFSEEDYFTLVNAGLS-- 564
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ I P I KP L++G+QV+ST++ NL L+ I +
Sbjct: 565 DRRIVLDRPCIVKPARLYSGRQVISTILKNLG-----------LVVNI-------EIETN 606
Query: 133 LVHAVWDTH-----VTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
+ W H + IR G +++GILDK G T L+HA + G + LL+ +
Sbjct: 607 VPKNAWREHSEERILRIREGNIVTGILDKNSLGPTFKSLIHACGEIKGFATSNDLLTYIG 666
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIIS 247
+ YL GFT+G+ D+L+ +E D+KR +++ R+ + A ++ +P+
Sbjct: 667 WVGNRYLLMYGFTIGIDDLLLDKEADKKRREVV----RVKDQEAKELQRRYVEANPDFYL 722
Query: 248 SQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKG 307
++AY +D ++ ++ VT+ I +V +P GL + FP NN++ ++ +G+KG
Sbjct: 723 YADKKAY---------LDSVMRTEMNSVTSEIVKVSVPSGLQKSFPENNMELIIATGSKG 773
Query: 308 STVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEF 367
S VN QIS LGQ ELEG+R +M SG+TLP F + SP +GG++ RF+TGI ++
Sbjct: 774 SIVNLSQISGALGQQELEGQRVPIMASGKTLPCFAALDPSPSSGGYIYHRFLTGIDLPQY 833
Query: 368 FFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL 427
FFHCMAGREGLIDTA+KT+ SGYLQRCL+KH+E V YDM+VR +IQ +YGEDGL
Sbjct: 834 FFHCMAGREGLIDTAIKTANSGYLQRCLIKHMEEAKVEYDMSVRIGK-RVIQFMYGEDGL 892
Query: 428 DVTKRQYLTDKQF 440
D TK YL D +F
Sbjct: 893 DCTKSSYLDDAEF 905
Score = 193 bits (490), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 153/459 (33%), Positives = 231/459 (50%), Gaps = 48/459 (10%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
+ SLA+PGE+VGV+AAQS+GEPSTQMTLNTFH AG G NVTLG+PRLREIL+ A+K+I+
Sbjct: 955 ICSLADPGESVGVIAAQSVGEPSTQMTLNTFHLAGVGAKNVTLGVPRLREILITASKSIR 1014
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCF 687
TP + +P + + + + + R+T+ D +++ + E + + ++K F
Sbjct: 1015 TPLITVPI------KRRVSFDITECLRRVTLKDCVKRFGVTEEI-VMVSGVFQKKVKIMF 1067
Query: 688 IPAHMYRDKTSVKPSKIIDHFERKFLKEL------------EVAIAKRAAQGLKNMNIEQ 735
D +++D RKFLK L + +++ K ++ E
Sbjct: 1068 -----ELDNFVDLAGEVLD---RKFLKLLGNKMKGLAKAKYTLGMSEAPKDDCKEVD-EN 1118
Query: 736 SRDQMEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPED 795
++ ED+ + D+ EG L + ++D ED S+ + E D D
Sbjct: 1119 KENEGEDESDSDKESDPEGDNVCL-EATTGENGDKDSEDHSTSYLEATDETDQ-----TD 1172
Query: 796 EERMSEREED-----DNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC 850
+ +E EED + N+ F+I + N + VV +I+ + M
Sbjct: 1173 DSGNTEEEEDFMNFAKKSKNV-LTFEILYPSGFNEMISSVV--ESILPTIVVREVKGME- 1228
Query: 851 KLLFLPSNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLY---VNDIHYMASTYGIEA 907
K S LF + S + L T I V+ Y LLD+ +Y NDI+ + T G+EA
Sbjct: 1229 KASVSGSQLFVKSSSIYSL-TRMIEVS-PGVYEDLLDILDIYNAESNDIYDVYLTLGVEA 1286
Query: 908 ANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEM 967
A II EV VF VYGI +D RHL L+ADYMT G+Y +R+G+ + S IQ+++FE
Sbjct: 1287 ARHAIINEVVKVFDVYGISIDIRHLLLIADYMTRKGSYSPFSRHGLGADDSPIQRISFES 1346
Query: 968 PLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+ A+ ED L PSA + +G R GTG F L
Sbjct: 1347 CYSNFKTAATFHLEDKLSNPSASLTVGNPVRCGTGCFDL 1385
>gi|303389110|ref|XP_003072788.1| DNA-directed RNA polymerase subunit alpha [Encephalitozoon
intestinalis ATCC 50506]
gi|303301930|gb|ADM11428.1| DNA-directed RNA polymerase subunit alpha [Encephalitozoon
intestinalis ATCC 50506]
Length = 1393
Score = 295 bits (756), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 167/441 (37%), Positives = 245/441 (55%), Gaps = 47/441 (10%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S+ +AEA ++ YLVP DG P+ GL QDH+++ A L+++++F + +Y LV
Sbjct: 503 SYVAEAEARHIVMNDFNYLVPTDGKPIRGLTQDHIVAAAILTMKNSFFSEEDYFTLVNSG 562
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGS 128
L I P I KP+ L++GKQVLS +I NL G L+ ++ K
Sbjct: 563 LD--GRRITIDKPCILKPVRLYSGKQVLSAIIKNL----------GLGLNIEIETK---- 606
Query: 129 TQYGLVHAVWDTH-----VTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLL 183
+ W H + I G +++GILDK G T L HA + G + LL
Sbjct: 607 ----VPKDAWREHSEESVLRISEGNIITGILDKNSIGPTFKSLAHACGEIRGFAASNDLL 662
Query: 184 SCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKII----NKARRLGTEAACNALGLPL 239
+ + ++ YLQ GFT+G D+++ + + KR K++ K R L E +
Sbjct: 663 TYIGRVCNKYLQMYGFTIGADDLILSNDANAKRKKVMETKDKKVRELQKEY--------M 714
Query: 240 DTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQF 299
+ +P+ ++AY +D + ++K+T+ I +P GL + FP N ++
Sbjct: 715 EANPDFYLCDDKKAY---------LDSIMRREMNKITSEIVNASVPSGLKKGFPDNGMEL 765
Query: 300 MVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFM 359
+V G+KGS VN QIS LGQ ELEG+R +M SG+TLP F P + P +GG++ F+
Sbjct: 766 IVSIGSKGSIVNLSQISGALGQQELEGRRVPVMASGKTLPCFKPLDPDPSSGGYIYQGFL 825
Query: 360 TGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQ 419
GI P ++FFHCMAGREGLIDTA+KT+ SGYLQRCLVKH+EG+ V YD + R ++Q
Sbjct: 826 DGINPSQYFFHCMAGREGLIDTAIKTANSGYLQRCLVKHMEGIKVEYDRSARIGK-KIVQ 884
Query: 420 VLYGEDGLDVTKRQYLTDKQF 440
+YGEDGLD TK YL D +F
Sbjct: 885 FVYGEDGLDCTKSSYLDDPEF 905
Score = 198 bits (503), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 155/462 (33%), Positives = 226/462 (48%), Gaps = 57/462 (12%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
+ SLA+PGE+VG++AAQSIGEPSTQMTLNTFH AG G+ NVTLG+PRLREIL++A+K+IK
Sbjct: 955 VCSLADPGESVGIIAAQSIGEPSTQMTLNTFHLAGVGEKNVTLGVPRLREILLVASKSIK 1014
Query: 628 TPSMEIPFLPDMPKLEKKAN-RLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFC 686
TP + IP + KK N + + +IT+ D + K ++ E + + + +++
Sbjct: 1015 TPLVTIP-------IRKKLNFDIGTCLKKITLKDCVRKFRVSEEI-VMIDGVFQKKIRMV 1066
Query: 687 FIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVED 746
F + D S + +RKFLK L LK ++ + + ME+ +D
Sbjct: 1067 F-DLDNFVDLAS-------EALDRKFLKIL--------GSKLKMLSKVKYKLGMEEGNKD 1110
Query: 747 DEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDD 806
E E S +E + D + N+ + D ++ E + E + D
Sbjct: 1111 SSKELDENKENEEEDESDSDEESNSKSDYICVDTSENENTEKDSDDTTHPETIDEIDHTD 1170
Query: 807 NTSNIGERFKIEF-RDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLL--FLPSNLFEEK 863
N+S+ E I F R S N+ +++ N + ++ LP+ + E
Sbjct: 1171 NSSSTEEENLINFTRKSKNILSFEMLYPSGF---------NEVISSIIESILPTVVVRET 1221
Query: 864 ESKHLLKTDGINVNFISQ----------------YRHLLDLNKLY---VNDIHYMASTYG 904
+ G N F+ Y LLDL +Y NDI+ + T G
Sbjct: 1222 KGIKKASISG-NTLFVESPSISSLTGRIEVAPGVYEDLLDLLDIYNSESNDIYNVYLTLG 1280
Query: 905 IEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMT 964
IEAA II EV VF VYGI +D RHL LVADYMT G Y +R+G+ + S IQKM+
Sbjct: 1281 IEAARHAIINEVVKVFDVYGISIDARHLLLVADYMTRKGDYSPFSRHGLGIGDSLIQKMS 1340
Query: 965 FEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
FE + A+ ED L PSA + +G + GT F L
Sbjct: 1341 FESCYSNFKTAAAFHLEDQLSNPSASITVGNPVKCGTNSFDL 1382
>gi|126272809|ref|XP_001364762.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Monodelphis
domestica]
Length = 1390
Score = 293 bits (749), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 213/622 (34%), Positives = 312/622 (50%), Gaps = 59/622 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF RA+ ++ L
Sbjct: 516 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 575
Query: 73 NTEI--RTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ +I R PPTI KP+ LWTGKQV S + L P D+ +R G KQ+
Sbjct: 576 DEKIKVRLPPPTILKPVTLWTGKQVFSLI---LQPSDENPVRANLRTKG----KQYCGRG 628
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L V D++VTI++ EL+SG +DK GS ++ + + + G A +S LA+L
Sbjct: 629 EDL--CVNDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQTEAADAMSRLARL 686
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
VYL GF++G+ D+ Q + + +++N + C+ L+T Q
Sbjct: 687 APVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYK-----KCDEYIEALNTG----KLQ 737
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
Q + A I ++ L + ++ CL E +N+ M G+KGS
Sbjct: 738 QQPGCTAEETLEALILKE----LSVIRDHAGSACLRE----LDKSNSPLIMALCGSKGSF 789
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ +GQ + G R R+LP F + P A GFV F +G+ P EFFF
Sbjct: 790 INISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFF 849
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H MAGREGL+DTAVKT+ +GY+QR LVK LE L YD+TVR S +IQ +YG DGLD
Sbjct: 850 HTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDP 909
Query: 430 TKRQYLTDK-QFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPH 488
+ + +F + DNIK + + L K L+LT +S K N
Sbjct: 910 AAMEGKDEPLEFKRVLDNIKAVFPCQSEPALSKNE-------LVLTTESIMKRNEFLCCQ 962
Query: 489 RTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISEN-LADSVVKYT 547
+ + ++++ ++ + KK R K+ I++N + V Y
Sbjct: 963 ES--FLQEIKKFIKIVSEKIKKTRDKY------------------GINDNGTTEPRVLYQ 1002
Query: 548 KGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMN 607
R + ++KF + K + + PG VG L AQSIGEP TQMTL TFHFAG MN
Sbjct: 1003 LDRITPTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMN 1062
Query: 608 VTLGIPRLREILMMATKAIKTP 629
+TLG+PR++EI+ A+KAI TP
Sbjct: 1063 ITLGVPRIKEII-NASKAISTP 1083
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 79/147 (53%), Gaps = 2/147 (1%)
Query: 864 ESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
+ K+ L +G N+ + H + K N+ + + T GIEAA II E++ +
Sbjct: 1220 KEKYKLLVEGDNLRAV-MATHGVQGTKTTSNNTYEVEKTLGIEAARSTIINEIQYTMVNH 1278
Query: 924 GIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGRED 982
G+ +D RH+ L++D MT+ G + + R G+ ++ S + +FE + + A+ G++D
Sbjct: 1279 GMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKD 1338
Query: 983 SLRAPSARVMLGQECRQGTGLFQLRNR 1009
S+ S +++G GTGLF+L ++
Sbjct: 1339 SVCGVSECIIMGIPMNIGTGLFKLLHK 1365
>gi|139948582|ref|NP_001077219.1| DNA-directed RNA polymerase III subunit RPC1 [Bos taurus]
gi|187611407|sp|A4IF62.1|RPC1_BOVIN RecName: Full=DNA-directed RNA polymerase III subunit RPC1; Short=RNA
polymerase III subunit C1; AltName: Full=DNA-directed RNA
polymerase III subunit A
gi|134024541|gb|AAI34423.1| POLR3A protein [Bos taurus]
gi|296472154|tpg|DAA14269.1| TPA: polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Bos
taurus]
Length = 1390
Score = 293 bits (749), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 212/621 (34%), Positives = 308/621 (49%), Gaps = 57/621 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF RA+ ++ L
Sbjct: 516 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 575
Query: 73 NTEI--RTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ +I R PPTI KP+ LWTGKQ+ S + L P D +R G KQ+
Sbjct: 576 DEKIKVRLPPPTILKPVTLWTGKQIFSVI---LRPSDDNPVRANLRTKG----KQYCGRG 628
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L V D++VTI++ EL+SG +DK GS ++ + + + G A +S LA+L
Sbjct: 629 EDL--CVNDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARL 686
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
VYL GF++G+ D+ Q + + +++N + C+ L+T Q
Sbjct: 687 APVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYK-----KCDEYIEALNTG----KLQ 737
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
Q + A I ++ L + ++ CL E +N+ M G+KGS
Sbjct: 738 QQPGCTAEETLEALILKE----LSVIRDHAGSACLRE----LDKSNSPLTMALCGSKGSF 789
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ +GQ + G R R+LP F + P A GFV F +G+ P EFFF
Sbjct: 790 INISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFF 849
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H MAGREGL+DTAVKT+ +GY+QR LVK LE L YD+TVR S +IQ +YG DGLD
Sbjct: 850 HTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDP 909
Query: 430 TKRQYLTDK-QFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPH 488
+ + +F + DNIK + + L K LLL+ +S K N F
Sbjct: 910 AAMEGKDEPLEFKRVLDNIKAVFPCRSEPALSKNE-------LLLSAESIMKKNE-FLCC 961
Query: 489 RTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK 548
+ F ++ + ++ +K +K K +G + V Y
Sbjct: 962 QDSFLQEIKKFIKEVSEKIKKTRDK------------------YGINDNGTTEPRVLYQL 1003
Query: 549 GRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
R + ++KF + K + + PG VG L AQSIGEP TQMTL TFHFAG MN+
Sbjct: 1004 DRITPTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNI 1063
Query: 609 TLGIPRLREILMMATKAIKTP 629
TLG+PR++EI+ A+KAI TP
Sbjct: 1064 TLGVPRIKEII-NASKAISTP 1083
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 68/120 (56%), Gaps = 1/120 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N+ + + T GIEAA II E++ +G+ +D RH+ L++D MT+ G + + R G+
Sbjct: 1249 NNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGL 1308
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNREKK 1012
++ S + +FE + + A+ G++DS+ S +++G GTGLF+L ++ +
Sbjct: 1309 AKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKANR 1368
>gi|426255838|ref|XP_004021555.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Ovis aries]
Length = 1390
Score = 292 bits (748), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 212/621 (34%), Positives = 308/621 (49%), Gaps = 57/621 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF RA+ ++ L
Sbjct: 516 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 575
Query: 73 NTEI--RTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ +I R PPTI KP+ LWTGKQ+ S + L P D +R G KQ+
Sbjct: 576 DEKIKVRLPPPTILKPVTLWTGKQIFSVI---LRPSDDNPVRANLRTKG----KQYCGRG 628
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L V D++VTI++ EL+SG +DK GS ++ + + + G A +S LA+L
Sbjct: 629 EDL--CVNDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARL 686
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
VYL GF++G+ D+ Q + + +++N + C+ L+T Q
Sbjct: 687 APVYLSNRGFSIGIGDVTPGQGLLKAKHELLNAGYK-----KCDEYIEALNTG----KLQ 737
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
Q + A I ++ L + ++ CL E +N+ M G+KGS
Sbjct: 738 QQPGCTAEETLEALILKE----LSVIRDHAGSACLRE----LDKSNSPLTMALCGSKGSF 789
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ +GQ + G R R+LP F + P A GFV F +G+ P EFFF
Sbjct: 790 INISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFF 849
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H MAGREGL+DTAVKT+ +GY+QR LVK LE L YD+TVR S +IQ +YG DGLD
Sbjct: 850 HTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDP 909
Query: 430 TKRQYLTDK-QFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPH 488
+ + +F + DNIK + + L K LLL+ +S K N F
Sbjct: 910 AAMEGKDEPLEFKRVLDNIKAVFPCRSEPALSKNE-------LLLSAESIMKKNE-FLCC 961
Query: 489 RTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK 548
+ F ++ + ++ +K +K K +G + V Y
Sbjct: 962 QDSFLQEIKKFIKEVSEKIKKTRDK------------------YGINDNGTTEPRVLYQL 1003
Query: 549 GRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
R + ++KF + K + + PG VG L AQSIGEP TQMTL TFHFAG MN+
Sbjct: 1004 DRITPTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNI 1063
Query: 609 TLGIPRLREILMMATKAIKTP 629
TLG+PR++EI+ A+KAI TP
Sbjct: 1064 TLGVPRIKEII-NASKAISTP 1083
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 67/117 (57%), Gaps = 1/117 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N+ + + T GIEAA II E++ +G+ +D RH+ L++D MT+ G + + R G+
Sbjct: 1249 NNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGL 1308
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNR 1009
++ S + +FE + + A+ G++DS+ S +++G GTGLF+L ++
Sbjct: 1309 AKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHK 1365
>gi|431904080|gb|ELK09502.1| DNA-directed RNA polymerase III subunit RPC1 [Pteropus alecto]
Length = 1375
Score = 291 bits (745), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 210/621 (33%), Positives = 306/621 (49%), Gaps = 57/621 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF RA+ ++ L
Sbjct: 516 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 575
Query: 73 NTEI--RTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ +I R PPTI KP+ LWTGKQ+ S + L P D +R G KQ+
Sbjct: 576 DEKIKVRLPPPTILKPVTLWTGKQIFSVI---LRPSDDNPVRANLRTKG----KQYCGKG 628
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L + D++VTI++ EL+SG +DK GS ++ + + + G A +S LA+L
Sbjct: 629 EDL--CINDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARL 686
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
VYL GF++G+ D+ Q + + +++N + C+ L+T Q
Sbjct: 687 APVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYK-----KCDEYIEALNTG----KLQ 737
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
Q + A I ++ L + ++ CL E +N+ M G+KGS
Sbjct: 738 QQPGCTAEETLEALILKE----LSVIRDHAGSACLRE----LDKSNSPLTMALCGSKGSF 789
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ +GQ + G R R+LP F + P A GFV F +G+ P EFFF
Sbjct: 790 INISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFF 849
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H MAGREGL+DTAVKT+ +GY+QR LVK LE L YD+TVR S +IQ +YG DGLD
Sbjct: 850 HTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDP 909
Query: 430 TKRQYLTDK-QFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPH 488
+ + +F + DNIK + + L K L+LT +S K N
Sbjct: 910 AAMEGKDEPLEFKRVLDNIKAVFPCQSEPALSKNE-------LILTTESIMKKN------ 956
Query: 489 RTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK 548
++ D ++ +K K + + T +G + V Y
Sbjct: 957 ----------EFLCCQDSFLQEIKKFIKGVSEKIKKTRD---KYGINDNGTTEPRVLYQL 1003
Query: 549 GRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
R + ++KF + K + + PG VG L AQSIGEP TQMTL TFHFAG MN+
Sbjct: 1004 DRITPTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNI 1063
Query: 609 TLGIPRLREILMMATKAIKTP 629
TLG+PR++EI+ A+KAI TP
Sbjct: 1064 TLGVPRIKEII-NASKAISTP 1083
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 80/150 (53%), Gaps = 2/150 (1%)
Query: 861 EEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 920
E+ K+ L +G N+ + H + + N+ + + T GIEAA II E++
Sbjct: 1202 EQSGKKYKLLVEGDNLRAV-MATHGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTM 1260
Query: 921 AVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQG 979
+G+ +D RH+ L++D MT+ G + + R G+ ++ S + +FE + + A+ G
Sbjct: 1261 VNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFG 1320
Query: 980 REDSLRAPSARVMLGQECRQGTGLFQLRNR 1009
++DS+ S +++G GTGLF+L ++
Sbjct: 1321 QKDSVCGVSECIIMGIPMNIGTGLFKLLHK 1350
>gi|149690349|ref|XP_001504046.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Equus
caballus]
Length = 1390
Score = 291 bits (744), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 211/621 (33%), Positives = 305/621 (49%), Gaps = 57/621 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF RA+ ++ L
Sbjct: 516 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 575
Query: 73 NTEI--RTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ +I R PPTI KP+ LWTGKQ+ S V L P D +R G KQ+
Sbjct: 576 DEKIKVRLPPPTILKPVTLWTGKQIFSVV---LRPSDDSPVRANLRTKG----KQYCGRG 628
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L D++VTI++ EL+SG +DK GS ++ + + + G A +S LA+L
Sbjct: 629 EDL--CANDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARL 686
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
VYL GF++G+ D+ Q + + +++N + C+ L+T Q
Sbjct: 687 APVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYK-----KCDEYIEALNTG----KLQ 737
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
Q + A I ++ L + ++ CL E +N+ M G+KGS
Sbjct: 738 QQPGCTAEETLEALILKE----LSVIRDHAGSACLRE----LDKSNSPLTMALCGSKGSF 789
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ +GQ + G R R+LP F + P A GFV F +G+ P EFFF
Sbjct: 790 INISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFF 849
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H MAGREGL+DTAVKT+ +GY+QR LVK LE L YD+TVR S +IQ +YG DGLD
Sbjct: 850 HTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDP 909
Query: 430 TKRQYLTDK-QFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPH 488
+ + +F + DNIK + + L K L+LT +S K N
Sbjct: 910 AAMEGKDEPLEFKRVLDNIKAVFPCRSEPALSKNE-------LILTTESIMKKN------ 956
Query: 489 RTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK 548
++ D ++ +K K + + T +G + V Y
Sbjct: 957 ----------EFLCCQDSFLQEIKKFIKGVSEKIKKTRD---KYGINDNGTTEPRVLYQL 1003
Query: 549 GRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
R + ++KF + K + + PG VG L AQSIGEP TQMTL TFHFAG MN+
Sbjct: 1004 DRITPTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNI 1063
Query: 609 TLGIPRLREILMMATKAIKTP 629
TLG+PR++EI+ A+KAI TP
Sbjct: 1064 TLGVPRIKEII-NASKAISTP 1083
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 68/120 (56%), Gaps = 1/120 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N+ + + T GIEAA II E++ +G+ +D RH+ L++D MT+ G + + R G+
Sbjct: 1249 NNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGL 1308
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNREKK 1012
++ S + +FE + + A+ G++DS+ S +++G GTGLF+L ++ +
Sbjct: 1309 AKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKANR 1368
>gi|194042171|ref|XP_001929395.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like [Sus
scrofa]
Length = 1390
Score = 290 bits (743), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 213/621 (34%), Positives = 305/621 (49%), Gaps = 57/621 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF RA+ ++ L
Sbjct: 516 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 575
Query: 73 NTEI--RTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ +I R PPTI KP+ LWTGKQV S + L P +R G KQ+
Sbjct: 576 DEKIKVRLPPPTILKPVTLWTGKQVFSVI---LRPSYDNPVRANLRTKG----KQYCGKG 628
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L V D++VTI++ EL+SG +DK GS ++ + + + G A +S LA+L
Sbjct: 629 EDL--CVNDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARL 686
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
VYL GF++G+ D+ Q + + +++N R C+ L+T Q
Sbjct: 687 APVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYR-----KCDEYIEALNTG----KLQ 737
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
Q + A I ++ L + ++ CL E +N+ M G+KGS
Sbjct: 738 QQPGCTAEETLEALILKE----LSVIRDHAGSACLRE----LDKSNSPLTMALCGSKGSF 789
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ +GQ + G R R+LP F + P A GFV F +G+ P EFFF
Sbjct: 790 INISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFF 849
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H MAGREGL+DTAVKT+ +GY+QR LVK LE L YD+TVR S +IQ +YG DGLD
Sbjct: 850 HTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDP 909
Query: 430 TKRQYLTDK-QFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPH 488
+ + +F + DNIK + + L K LLLT +S K N
Sbjct: 910 AAMEGKDEPLEFKRVLDNIKAVFPCQSEPALSKNE-------LLLTTESIMKKN------ 956
Query: 489 RTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK 548
++ D ++ +K K + + T +G + V Y
Sbjct: 957 ----------EFLCCQDSFLQEIKKFIKGVSEKIKKTRD---KYGINDNGTTEPRVLYQL 1003
Query: 549 GRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
R + ++KF + K + + PG VG L AQSIGEP TQMTL TFHFAG MN+
Sbjct: 1004 DRITPTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNI 1063
Query: 609 TLGIPRLREILMMATKAIKTP 629
TLG+PR++EI+ A+KAI TP
Sbjct: 1064 TLGVPRIKEII-NASKAISTP 1083
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 68/120 (56%), Gaps = 1/120 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N+ + + T GIEAA II E++ +G+ +D RH+ L++D MT+ G + + R G+
Sbjct: 1249 NNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGL 1308
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNREKK 1012
++ S + +FE + + A+ G++DS+ S +++G GTGLF+L ++ +
Sbjct: 1309 AKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKANR 1368
>gi|410975432|ref|XP_003994136.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Felis catus]
Length = 1390
Score = 290 bits (742), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 210/621 (33%), Positives = 305/621 (49%), Gaps = 57/621 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF RA+ ++ L
Sbjct: 516 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 575
Query: 73 NTEI--RTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ +I R PPTI KP+ LWTGKQ+ S + L P D +R G KQ+
Sbjct: 576 DEKIKVRLPPPTILKPVTLWTGKQIFSVI---LRPSDDNPVRANLRTKG----KQYCGKG 628
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L V D++VTI++ EL+SG +DK GS ++ + + + G A +S LA+L
Sbjct: 629 EDL--CVNDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARL 686
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
VYL GF++G+ D+ Q + + +++N + C+ L+T Q
Sbjct: 687 APVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYK-----KCDEYIEALNTG----KLQ 737
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
Q + A I ++ L + ++ CL E +N+ M G+KGS
Sbjct: 738 QQPGCTAEETLEALILKE----LSVIRDHAGSACLRE----LDKSNSPLTMALCGSKGSF 789
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ +GQ + G R R+LP F + P A GFV F +G+ P EFFF
Sbjct: 790 INISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFF 849
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H MAGREGL+DTAVKT+ +GY+QR LVK LE L YD+TVR S +IQ +YG DGLD
Sbjct: 850 HTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDP 909
Query: 430 TKRQYLTDK-QFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPH 488
+ + +F + DNI K + + LS L+L T K F+
Sbjct: 910 AAMEGKDEPLEFKRVLDNI------KAVFPCQSEPALSKNELVLTTESIMKKTEFLCC-- 961
Query: 489 RTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK 548
+ F ++ + + +K +K K +G + V Y
Sbjct: 962 QDSFLQEIKKFIKGVSEKIKKTRDK------------------YGINDNGTTEPRVLYQL 1003
Query: 549 GRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
R + ++KF + K + + PG VG L AQSIGEP TQMTL TFHFAG MN+
Sbjct: 1004 DRITPTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNI 1063
Query: 609 TLGIPRLREILMMATKAIKTP 629
TLG+PR++EI+ A+KAI TP
Sbjct: 1064 TLGVPRIKEII-NASKAISTP 1083
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 67/117 (57%), Gaps = 1/117 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N+ + + T GIEAA II E++ +G+ +D RH+ L++D MT+ G + + R G+
Sbjct: 1249 NNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGL 1308
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNR 1009
++ S + +FE + + A+ G++DS+ S +++G GTGLF+L ++
Sbjct: 1309 AKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHK 1365
>gi|401826144|ref|XP_003887166.1| DNA-directed RNA polymerase subunit beta [Encephalitozoon hellem
ATCC 50504]
gi|337263120|gb|AEI69271.1| DNA-directed RNA polymerase subunit alpha [Encephalitozoon hellem]
gi|392998324|gb|AFM98185.1| DNA-directed RNA polymerase subunit beta' [Encephalitozoon hellem
ATCC 50504]
Length = 1396
Score = 290 bits (742), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 163/441 (36%), Positives = 248/441 (56%), Gaps = 47/441 (10%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
++ +AEA ++ YL P DG+P+ GL QDH++ L+++++F + +Y LV
Sbjct: 503 TYVSEAEARHIVMNDFNYLAPTDGNPIRGLTQDHIVVATILTMKNSFFSEEDYFTLVNSG 562
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGS 128
I + P I KP+ L++GKQV+ST+I NL G+L +
Sbjct: 563 --INGRRVVLDKPCILKPVRLYSGKQVISTIIKNL---------------GLLVDVEI-- 603
Query: 129 TQYGLVHAVWDTH-----VTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLL 183
Q + W H + I+ G +++GILDK G T L H + G + LL
Sbjct: 604 -QTKIPANAWKEHSEESKLRIKQGNIVTGILDKNSLGPTFKSLAHTCGEVKGFAASNDLL 662
Query: 184 SCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKII----NKARRLGTEAACNALGLPL 239
+ + ++ YLQ GFT+G+ D+++ +E D +R +I +A+RL + +
Sbjct: 663 TYVGRVANRYLQMYGFTIGIDDLILDKEADTRRKMVIEAKDKEAQRLQRKY--------M 714
Query: 240 DTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQF 299
+ +P+ + ++ Y +D ++ ++KVT +I +P GL + FP N ++
Sbjct: 715 EANPDFYLYEDKKVY---------LDSIMRAEMNKVTTSIVDASVPSGLKKSFPNNGMEL 765
Query: 300 MVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFM 359
++ GAKGS VN QIS LGQ ELEG+R +MVSG+TLP F + SP +GG++ F+
Sbjct: 766 IITVGAKGSIVNLSQISGALGQQELEGRRVPIMVSGKTLPCFRELDPSPSSGGYIYQGFL 825
Query: 360 TGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQ 419
GI ++FFHCMAGREGLIDTA+KT+ SGYLQRCLVKH+E L V YDM+ R +IQ
Sbjct: 826 NGIDLPQYFFHCMAGREGLIDTAIKTANSGYLQRCLVKHMEELKVAYDMSARIGS-KIIQ 884
Query: 420 VLYGEDGLDVTKRQYLTDKQF 440
+YGEDGLD T+ YL+D +F
Sbjct: 885 FVYGEDGLDCTRSSYLSDTEF 905
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 156/477 (32%), Positives = 238/477 (49%), Gaps = 61/477 (12%)
Query: 557 DKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLR 616
D+ + + SLA+PGE+VGV+AAQS+GEPSTQMTLNTFH AG G NVTLG+PRLR
Sbjct: 944 DELKGFLMSRYACSLADPGESVGVIAAQSVGEPSTQMTLNTFHLAGVGAKNVTLGVPRLR 1003
Query: 617 EILMMATKAIKTPSMEIPFLPDMPKLEKKAN-RLAKSMTRITMADVLEKVKIKEWLEISP 675
EIL+ A+++IKTP + IP +++KA+ +A+ + RIT+ D ++K E + +
Sbjct: 1004 EILLAASRSIKTPLIMIP-------IKRKASFDIAECLRRITLKDCVKKFATTEEI-VMV 1055
Query: 676 EPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELE-----VAIAKRAAQGLKN 730
+ ++K F + + D S K K +K L + +++ + + K
Sbjct: 1056 DGVYQKKIKIMF-ELNNFVDLASEVLDKKFLKLFGKKMKVLSKTKYRLGVSEVSKESFKE 1114
Query: 731 MNIEQSRDQMEDDVEDDEGEGAEGAGAALGRVDVSSDEE---RDEEDAVQSHKKVNQEED 787
++ E ++ ED E D SD+E + ++ V S EED
Sbjct: 1115 VD-ENKENESEDQSESD------------------SDKESVTKSDDVCVDSIGDGASEED 1155
Query: 788 NDFEEPEDEERMSEREEDDNTSNIGERFKIEF-RDSTNVF-------------VKDVVNQ 833
+D E E ++ D+++++ + + F R S NVF + V+
Sbjct: 1156 SDNNTVTCPETGEETDQMDDSNDVSQEELMNFTRKSRNVFSFEMLYPSGFNEVISSVIES 1215
Query: 834 --HNIVHKYSYD-KKNHMWCKLLFL-PSNLFEEKESKHLLKTDGINVNFISQYRHLLDLN 889
+V + + D KK + LF+ S++F + + + G+ + +S LD+
Sbjct: 1216 ILPTVVVRETKDVKKASISGNTLFVESSSIF--SLTGRVETSPGVYEDLMS----FLDIY 1269
Query: 890 KLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMN 949
NDI+ + T GIEAA II E+ VF VYGI +DPRHL LVADYMT GTY +
Sbjct: 1270 NAESNDIYNVYLTLGIEAARHAIISEIVKVFDVYGITIDPRHLLLVADYMTRKGTYSPFS 1329
Query: 950 RNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
R G S IQ+M+FE + A+ ED L PSA + +G GT F L
Sbjct: 1330 RYGFGAEDSLIQRMSFESCYSSFKTAAAFHLEDRLSNPSASITVGNPVACGTSCFDL 1386
>gi|444720682|gb|ELW61459.1| DNA-directed RNA polymerase III subunit RPC1 [Tupaia chinensis]
Length = 1368
Score = 290 bits (742), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 208/620 (33%), Positives = 304/620 (49%), Gaps = 61/620 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF RA+ ++ L
Sbjct: 500 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 559
Query: 73 NTEIRTL--PPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ +I+ PPTI KP+ LWTGKQ+ S + L P D +R G KQ+
Sbjct: 560 DEKIKVCLPPPTILKPVTLWTGKQIFSVI---LRPSDDNPVRANLRTKG----KQYCGKG 612
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L V D++VTI++ EL+SG +DK GS ++ + + + G A +S LA+L
Sbjct: 613 EDL--CVNDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARL 670
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
VYL GF++G+ D+ Q + + +++N + C+ L+T Q
Sbjct: 671 APVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYK-----KCDEYIEALNTG----KLQ 721
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
Q + A I ++ L + ++ CL E +N+ M G+KGS
Sbjct: 722 QQPGCTAEETLEALILKE----LSVIRDHAGSACLRE----LDKSNSPLTMALCGSKGSF 773
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ +GQ + G R R+LP F + P A GFV F +G+ P EFFF
Sbjct: 774 INISQMIACVGQQAISGSRVPDGFENRSLPHFDKHSKLPAAKGFVANSFYSGLTPTEFFF 833
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H MAGREGL+DTAVKT+ +GY+QR LVK LE L YD+TVR S +IQ +YG DGLD
Sbjct: 834 HTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDP 893
Query: 430 TKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPHR 489
+ D+ F K +L+ +K P L++T +S K N
Sbjct: 894 AAMEG-KDEPLEF-----------KRVLDNIKSEPALSKNELVVTTESIMKKN------- 934
Query: 490 TKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKG 549
++ D ++ +K K + + T +G + V Y
Sbjct: 935 ---------EFLCCQDSFLQEIKKFIKGVSEKIKKTRD---KYGINDNGTTEPRVLYQLD 982
Query: 550 RTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVT 609
R + ++KF + K + + PG VG L AQSIGEP TQMTL TFHFAG MN+T
Sbjct: 983 RITPTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNIT 1042
Query: 610 LGIPRLREILMMATKAIKTP 629
LG+PR++EI+ A+KAI TP
Sbjct: 1043 LGVPRIKEII-NASKAISTP 1061
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 80/150 (53%), Gaps = 2/150 (1%)
Query: 864 ESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
+ K+ L +G N+ + H + K N+ + + T GIEAA II E++ +
Sbjct: 1198 KEKYKLLVEGDNLRAV-MATHGVKGTKTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNH 1256
Query: 924 GIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGRED 982
G+ +D RH+ L++D MT+ G + + R G+ ++ S + +FE + + A+ G++D
Sbjct: 1257 GMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKD 1316
Query: 983 SLRAPSARVMLGQECRQGTGLFQLRNREKK 1012
S+ S +++G GTGLF+L ++ +
Sbjct: 1317 SVCGVSECIIMGIPMNIGTGLFKLLHKANR 1346
>gi|417406396|gb|JAA49858.1| Putative rna polymerase i large subunit [Desmodus rotundus]
Length = 1390
Score = 290 bits (742), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 209/621 (33%), Positives = 306/621 (49%), Gaps = 57/621 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF RA+ ++ L
Sbjct: 516 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 575
Query: 73 NTEI--RTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ +I R PPTI KP+ LWTGKQ+ S + L P D +R G KQ+
Sbjct: 576 DEKIKVRLPPPTILKPVTLWTGKQIFSVI---LRPSDDSPVRANLRTKG----KQYCGKG 628
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L V D++VTI++ EL++G +DK GS ++ + + + G A +S L++L
Sbjct: 629 EDL--CVNDSYVTIQNSELMTGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLSRL 686
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
VYL GF++G+ D+ Q + + +++N + C+ L+T Q
Sbjct: 687 APVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYK-----KCDEYIEALNTG----KLQ 737
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
Q + A I ++ L + ++ CL E +N+ M G+KGS
Sbjct: 738 QQPGCTAEETLEALILKE----LSVIRDHAGSACLRE----LDKSNSPLTMALCGSKGSF 789
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ +GQ + G R R+LP F + P A GFV F +G+ P EFFF
Sbjct: 790 INISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFF 849
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H MAGREGL+DTAVKT+ +GY+QR LVK LE L YD+TVR S +IQ +YG DGLD
Sbjct: 850 HTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDP 909
Query: 430 TKRQYLTDK-QFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPH 488
+ + +F + DNIK + + L K L+LT +S K N
Sbjct: 910 AAMEGKDEPLEFKRVLDNIKAVFPCQSEPALSKNE-------LILTTESIMKKN------ 956
Query: 489 RTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK 548
++ D ++ +K K + + T +G + V Y
Sbjct: 957 ----------EFLCCQDSFLQEIKKFIKGVSEKIKKTRD---KYGINDNGTTEPRVLYQL 1003
Query: 549 GRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
R + ++KF + K + + PG VG L AQSIGEP TQMTL TFHFAG MN+
Sbjct: 1004 DRITPTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNI 1063
Query: 609 TLGIPRLREILMMATKAIKTP 629
TLG+PR++EI+ A+KAI TP
Sbjct: 1064 TLGVPRIKEII-NASKAISTP 1083
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 68/120 (56%), Gaps = 1/120 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N+ + + T GIEAA II E++ +G+ +D RH+ L++D MT+ G + + R G+
Sbjct: 1249 NNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGL 1308
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNREKK 1012
++ S + +FE + + A+ G++DS+ S +++G GTGLF+L ++ K
Sbjct: 1309 AKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKADK 1368
>gi|345309868|ref|XP_001514706.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC1
[Ornithorhynchus anatinus]
Length = 1489
Score = 290 bits (742), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 212/621 (34%), Positives = 308/621 (49%), Gaps = 57/621 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF RA+ ++ L
Sbjct: 615 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKTCQIIASILVGK 674
Query: 73 NTEI--RTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ +I R PPTI KP+ LWTGKQV S + L P D +R G KQ+
Sbjct: 675 DEKIKVRLPPPTILKPVTLWTGKQVFSLI---LRPSDASPVRANLRTKG----KQYCGRG 727
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L V D++VTI++ EL+SG +DK GS ++ + + + G A +S LA+L
Sbjct: 728 EDL--CVNDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQLEAADAMSRLARL 785
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
VYL GF++G+ D+ Q + + +++N + C+ L+T Q
Sbjct: 786 APVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYK-----KCDEYIEALNTG----KLQ 836
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
Q + A I ++ L + ++ CL E +N+ M G+KGS
Sbjct: 837 QQPGCTAEETLEALILKE----LSVIRDHAGSACLRE----LDKSNSPLVMAVCGSKGSF 888
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ +GQ + G R R+LP F + P A GFV F +G+ P EFFF
Sbjct: 889 INISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFF 948
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H MAGREGL+DTAVKT+ +GY+QR LVK LE L YD+TVR S +IQ +YG DGLD
Sbjct: 949 HTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDP 1008
Query: 430 TKRQYLTDK-QFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPH 488
+ + +F + DNIK + + L K L+LT +S K N
Sbjct: 1009 AAMEGKDEPLEFKRVLDNIKAVFPCQSEPALSKNE-------LVLTTESIMKKNEFLCCQ 1061
Query: 489 RTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK 548
+ + ++++ ++ + KK R K +G + V Y
Sbjct: 1062 DS--FLQEIKKFIKVVSEKIKKTRDK-----------------YGINDNGTTEPRVLYQL 1102
Query: 549 GRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
R + ++KF + K + + PG VG L AQSIGEP TQMTL TFHFAG MN+
Sbjct: 1103 DRITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNI 1162
Query: 609 TLGIPRLREILMMATKAIKTP 629
TLG+PR++EI+ A+KAI TP
Sbjct: 1163 TLGVPRIKEII-NASKAISTP 1182
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 80/150 (53%), Gaps = 2/150 (1%)
Query: 864 ESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
+ K+ L +G N+ + H + K N+ + + T GIEAA II E++ +
Sbjct: 1319 KEKYKLLVEGDNLRAV-MATHGVKGTKTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNH 1377
Query: 924 GIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGRED 982
G+ +D RH+ L++D MT+ G + + R G+ ++ S + +FE + + A+ G++D
Sbjct: 1378 GMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKD 1437
Query: 983 SLRAPSARVMLGQECRQGTGLFQLRNREKK 1012
S+ S +++G GTGLF+L ++ +
Sbjct: 1438 SVCGVSECIIMGIPMNIGTGLFKLLHKADR 1467
>gi|296220277|ref|XP_002756253.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 isoform 1
[Callithrix jacchus]
Length = 1390
Score = 290 bits (742), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 210/621 (33%), Positives = 304/621 (48%), Gaps = 57/621 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF RA+ ++ L
Sbjct: 516 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 575
Query: 73 NTEI--RTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ +I R PPTI KP+ LWTGKQ+ S + L P D +R G KQ+
Sbjct: 576 DEKIKVRLPPPTILKPVTLWTGKQIFSVI---LRPSDDNPVRANLRTKG----KQYCGKG 628
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L D++VTI++ EL+SG +DK GS ++ + + + G A +S LA+L
Sbjct: 629 EDL--CANDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARL 686
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
VYL GF++G+ D+ Q + + +++N + C+ L+T Q
Sbjct: 687 APVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYK-----KCDEYIEALNTG----KLQ 737
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
Q + A I ++ L + ++ CL E +N+ M G+KGS
Sbjct: 738 QQPGCTAEETLEALILKE----LSVIRDHAGSACLRE----LDKSNSPLTMALCGSKGSF 789
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ +GQ + G R R+LP F + P A GFV F +G+ P EFFF
Sbjct: 790 INISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFF 849
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H MAGREGL+DTAVKT+ +GY+QR LVK LE L YD+TVR S +IQ +YG DGLD
Sbjct: 850 HTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDP 909
Query: 430 TKRQYLTDK-QFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPH 488
+ + +F + DNI K + + LS L+L T K F+
Sbjct: 910 AAMEGKDEPLEFKRVLDNI------KAVFPCPSEPALSKNELILTTESIMNKSEFLCC-- 961
Query: 489 RTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK 548
+ F ++ + + +K +K K +G + V Y
Sbjct: 962 QDSFLQEIKKFIKGVSEKIKKTRDK------------------YGINDNGTTEPRVLYQL 1003
Query: 549 GRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
R + V+KF + K + + PG VG L AQSIGEP TQMTL TFHFAG MN+
Sbjct: 1004 DRITPTQVEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNI 1063
Query: 609 TLGIPRLREILMMATKAIKTP 629
TLG+PR++EI+ A+KAI TP
Sbjct: 1064 TLGVPRIKEII-NASKAISTP 1083
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 68/120 (56%), Gaps = 1/120 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N+ + + T GIEAA II E++ +G+ +D RH+ L++D MT+ G + + R G+
Sbjct: 1249 NNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGL 1308
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNREKK 1012
++ S + +FE + + A+ G++DS+ S +++G GTGLF+L ++ +
Sbjct: 1309 AKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKANR 1368
>gi|403297971|ref|XP_003939815.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Saimiri
boliviensis boliviensis]
Length = 1390
Score = 290 bits (741), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 210/621 (33%), Positives = 304/621 (48%), Gaps = 57/621 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF RA+ ++ L
Sbjct: 516 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 575
Query: 73 NTEI--RTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ +I R PPTI KP+ LWTGKQ+ S + L P D +R G KQ+
Sbjct: 576 DEKIKVRLPPPTILKPVTLWTGKQIFSVI---LRPSDDNPVRANLRTKG----KQYCGKG 628
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L D++VTI++ EL+SG +DK GS ++ + + + G A +S LA+L
Sbjct: 629 EDL--CANDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARL 686
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
VYL GF++G+ D+ Q + + +++N + C+ L+T Q
Sbjct: 687 APVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYK-----KCDEYIEALNTG----KLQ 737
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
Q + A I ++ L + ++ CL E +N+ M G+KGS
Sbjct: 738 QQPGCTAEETLEALILKE----LSVIRDHAGSACLRE----LDKSNSPLTMALCGSKGSF 789
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ +GQ + G R R+LP F + P A GFV F +G+ P EFFF
Sbjct: 790 INISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFF 849
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H MAGREGL+DTAVKT+ +GY+QR LVK LE L YD+TVR S +IQ +YG DGLD
Sbjct: 850 HTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDP 909
Query: 430 TKRQYLTDK-QFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPH 488
+ + +F + DNI K + + LS L+L T K F+
Sbjct: 910 AAMEGKDEPLEFKRVLDNI------KAVFPCPSEPALSKNELILTTESIMKKSEFLCC-- 961
Query: 489 RTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK 548
+ F ++ + + +K +K K +G + V Y
Sbjct: 962 QDSFLQEIKKFIKGVSEKIKKTRDK------------------YGINDNGTTEPRVLYQL 1003
Query: 549 GRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
R + V+KF + K + + PG VG L AQSIGEP TQMTL TFHFAG MN+
Sbjct: 1004 DRITPTQVEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNI 1063
Query: 609 TLGIPRLREILMMATKAIKTP 629
TLG+PR++EI+ A+KAI TP
Sbjct: 1064 TLGVPRIKEII-NASKAISTP 1083
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 68/120 (56%), Gaps = 1/120 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N+ + + T GIEAA II E++ +G+ +D RH+ L++D MT+ G + + R G+
Sbjct: 1249 NNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGL 1308
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNREKK 1012
++ S + +FE + + A+ G++DS+ S +++G GTGLF+L ++ +
Sbjct: 1309 AKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKANR 1368
>gi|402880352|ref|XP_003903768.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Papio
anubis]
Length = 1390
Score = 290 bits (741), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 210/621 (33%), Positives = 304/621 (48%), Gaps = 57/621 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF RA+ ++ L
Sbjct: 516 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 575
Query: 73 NTEI--RTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ +I R PPTI KP+ LWTGKQ+ S + L P D +R G KQ+
Sbjct: 576 DEKIKVRLPPPTILKPVTLWTGKQIFSVI---LRPSDDNPVRANLRTKG----KQYCGKG 628
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L D++VTI++ EL+SG +DK GS ++ + + + G A +S LA+L
Sbjct: 629 EDL--CANDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARL 686
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
VYL GF++G+ D+ Q + + +++N + C+ L+T Q
Sbjct: 687 APVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYK-----KCDEYIEALNTG----KLQ 737
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
Q + A I ++ L + ++ CL E +N+ M G+KGS
Sbjct: 738 QQPGCTAEETLEALILKE----LSVIRDHAGSACLRE----LDKSNSPLTMALCGSKGSF 789
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ +GQ + G R R+LP F + P A GFV F +G+ P EFFF
Sbjct: 790 INISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFF 849
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H MAGREGL+DTAVKT+ +GY+QR LVK LE L YD+TVR S +IQ +YG DGLD
Sbjct: 850 HTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDP 909
Query: 430 TKRQYLTDK-QFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPH 488
+ + +F + DNI K + + LS L+L T K F+
Sbjct: 910 AAMEGKDEPLEFKRVLDNI------KAVFPCPSEPALSKNELILTTESIMKKSEFLCC-- 961
Query: 489 RTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK 548
+ F ++ + + +K +K K +G + V Y
Sbjct: 962 QDSFLQEIKKFIKGVSEKIKKTRDK------------------YGINDNGTTEPRVLYQL 1003
Query: 549 GRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
R + V+KF + K + + PG VG L AQSIGEP TQMTL TFHFAG MN+
Sbjct: 1004 DRITPTQVEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNI 1063
Query: 609 TLGIPRLREILMMATKAIKTP 629
TLG+PR++EI+ A+KAI TP
Sbjct: 1064 TLGVPRIKEII-NASKAISTP 1083
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 67/117 (57%), Gaps = 1/117 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N+ + + T GIEAA II E++ +G+ +D RH+ L++D MT+ G + + R G+
Sbjct: 1249 NNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGL 1308
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNR 1009
++ S + +FE + + A+ G++DS+ S +++G GTGLF+L ++
Sbjct: 1309 AKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHK 1365
>gi|39725938|ref|NP_008986.2| DNA-directed RNA polymerase III subunit RPC1 [Homo sapiens]
gi|206729892|sp|O14802.2|RPC1_HUMAN RecName: Full=DNA-directed RNA polymerase III subunit RPC1; Short=RNA
polymerase III subunit C1; AltName: Full=DNA-directed RNA
polymerase III largest subunit; AltName:
Full=DNA-directed RNA polymerase III subunit A; AltName:
Full=RNA polymerase III 155 kDa subunit; Short=RPC155;
AltName: Full=RNA polymerase III subunit C160
gi|26996801|gb|AAH41089.1| Polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Homo
sapiens]
gi|119575002|gb|EAW54617.1| polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Homo
sapiens]
gi|168277638|dbj|BAG10797.1| DNA-directed RNA polymerase III subunit RPC1 [synthetic construct]
Length = 1390
Score = 290 bits (741), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 210/621 (33%), Positives = 304/621 (48%), Gaps = 57/621 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF RA+ ++ L
Sbjct: 516 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 575
Query: 73 NTEI--RTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ +I R PPTI KP+ LWTGKQ+ S + L P D +R G KQ+
Sbjct: 576 DEKIKVRLPPPTILKPVTLWTGKQIFSVI---LRPSDDNPVRANLRTKG----KQYCGKG 628
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L D++VTI++ EL+SG +DK GS ++ + + + G A +S LA+L
Sbjct: 629 EDL--CANDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARL 686
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
VYL GF++G+ D+ Q + + +++N + C+ L+T Q
Sbjct: 687 APVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYK-----KCDEYIEALNTG----KLQ 737
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
Q + A I ++ L + ++ CL E +N+ M G+KGS
Sbjct: 738 QQPGCTAEETLEALILKE----LSVIRDHAGSACLRE----LDKSNSPLTMALCGSKGSF 789
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ +GQ + G R R+LP F + P A GFV F +G+ P EFFF
Sbjct: 790 INISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFF 849
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H MAGREGL+DTAVKT+ +GY+QR LVK LE L YD+TVR S +IQ +YG DGLD
Sbjct: 850 HTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDP 909
Query: 430 TKRQYLTDK-QFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPH 488
+ + +F + DNI K + + LS L+L T K F+
Sbjct: 910 AAMEGKDEPLEFKRVLDNI------KAVFPCPSEPALSKNELILTTESIMKKSEFLCC-- 961
Query: 489 RTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK 548
+ F ++ + + +K +K K +G + V Y
Sbjct: 962 QDSFLQEIKKFIKGVSEKIKKTRDK------------------YGINDNGTTEPRVLYQL 1003
Query: 549 GRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
R + V+KF + K + + PG VG L AQSIGEP TQMTL TFHFAG MN+
Sbjct: 1004 DRITPTQVEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNI 1063
Query: 609 TLGIPRLREILMMATKAIKTP 629
TLG+PR++EI+ A+KAI TP
Sbjct: 1064 TLGVPRIKEII-NASKAISTP 1083
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 67/117 (57%), Gaps = 1/117 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N+ + + T GIEAA II E++ +G+ +D RH+ L++D MT+ G + + R G+
Sbjct: 1249 NNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGL 1308
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNR 1009
++ S + +FE + + A+ G++DS+ S +++G GTGLF+L ++
Sbjct: 1309 AKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHK 1365
>gi|410216326|gb|JAA05382.1| polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Pan
troglodytes]
gi|410254866|gb|JAA15400.1| polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Pan
troglodytes]
gi|410296284|gb|JAA26742.1| polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Pan
troglodytes]
gi|410329457|gb|JAA33675.1| polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Pan
troglodytes]
Length = 1390
Score = 289 bits (740), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 210/621 (33%), Positives = 304/621 (48%), Gaps = 57/621 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF RA+ ++ L
Sbjct: 516 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 575
Query: 73 NTEI--RTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ +I R PPTI KP+ LWTGKQ+ S + L P D +R G KQ+
Sbjct: 576 DEKIKVRLPPPTILKPVTLWTGKQIFSVI---LRPSDDNPVRANLRTKG----KQYCGKG 628
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L D++VTI++ EL+SG +DK GS ++ + + + G A +S LA+L
Sbjct: 629 EDL--CANDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARL 686
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
VYL GF++G+ D+ Q + + +++N + C+ L+T Q
Sbjct: 687 APVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYK-----KCDEYIEALNTG----KLQ 737
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
Q + A I ++ L + ++ CL E +N+ M G+KGS
Sbjct: 738 QQPGCTAEETLEALILKE----LSVIRDHAGSACLRE----LDKSNSPLTMALCGSKGSF 789
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ +GQ + G R R+LP F + P A GFV F +G+ P EFFF
Sbjct: 790 INISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFF 849
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H MAGREGL+DTAVKT+ +GY+QR LVK LE L YD+TVR S +IQ +YG DGLD
Sbjct: 850 HTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDP 909
Query: 430 TKRQYLTDK-QFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPH 488
+ + +F + DNI K + + LS L+L T K F+
Sbjct: 910 AAMEGKDEPLEFKRVLDNI------KAVFPCPSEPALSKNELILTTESIMKKSEFLCC-- 961
Query: 489 RTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK 548
+ F ++ + + +K +K K +G + V Y
Sbjct: 962 QDSFLQEIKKFIKGVSEKIKKTRDK------------------YGINDNGTTEPRVLYQL 1003
Query: 549 GRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
R + V+KF + K + + PG VG L AQSIGEP TQMTL TFHFAG MN+
Sbjct: 1004 DRITPTQVEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNI 1063
Query: 609 TLGIPRLREILMMATKAIKTP 629
TLG+PR++EI+ A+KAI TP
Sbjct: 1064 TLGVPRIKEII-NASKAISTP 1083
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 67/117 (57%), Gaps = 1/117 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N+ + + T GIEAA II E++ +G+ +D RH+ L++D MT+ G + + R G+
Sbjct: 1249 NNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGL 1308
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNR 1009
++ S + +FE + + A+ G++DS+ S +++G GTGLF+L ++
Sbjct: 1309 AKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHK 1365
>gi|410044035|ref|XP_507865.4| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Pan
troglodytes]
Length = 1380
Score = 289 bits (740), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 210/621 (33%), Positives = 304/621 (48%), Gaps = 57/621 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF RA+ ++ L
Sbjct: 506 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 565
Query: 73 NTEI--RTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ +I R PPTI KP+ LWTGKQ+ S + L P D +R G KQ+
Sbjct: 566 DEKIKVRLPPPTILKPVTLWTGKQIFSVI---LRPSDDNPVRANLRTKG----KQYCGKG 618
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L D++VTI++ EL+SG +DK GS ++ + + + G A +S LA+L
Sbjct: 619 EDL--CANDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARL 676
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
VYL GF++G+ D+ Q + + +++N + C+ L+T Q
Sbjct: 677 APVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYK-----KCDEYIEALNTG----KLQ 727
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
Q + A I ++ L + ++ CL E +N+ M G+KGS
Sbjct: 728 QQPGCTAEETLEALILKE----LSVIRDHAGSACLRE----LDKSNSPLTMALCGSKGSF 779
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ +GQ + G R R+LP F + P A GFV F +G+ P EFFF
Sbjct: 780 INISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFF 839
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H MAGREGL+DTAVKT+ +GY+QR LVK LE L YD+TVR S +IQ +YG DGLD
Sbjct: 840 HTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDP 899
Query: 430 TKRQYLTDK-QFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPH 488
+ + +F + DNI K + + LS L+L T K F+
Sbjct: 900 AAMEGKDEPLEFKRVLDNI------KAVFPCPSEPALSKNELILTTESIMKKSEFLCC-- 951
Query: 489 RTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK 548
+ F ++ + + +K +K K +G + V Y
Sbjct: 952 QDSFLQEIKKFIKGVSEKIKKTRDK------------------YGINDNGTTEPRVLYQL 993
Query: 549 GRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
R + V+KF + K + + PG VG L AQSIGEP TQMTL TFHFAG MN+
Sbjct: 994 DRITPTQVEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNI 1053
Query: 609 TLGIPRLREILMMATKAIKTP 629
TLG+PR++EI+ A+KAI TP
Sbjct: 1054 TLGVPRIKEII-NASKAISTP 1073
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 67/117 (57%), Gaps = 1/117 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N+ + + T GIEAA II E++ +G+ +D RH+ L++D MT+ G + + R G+
Sbjct: 1239 NNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGL 1298
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNR 1009
++ S + +FE + + A+ G++DS+ S +++G GTGLF+L ++
Sbjct: 1299 AKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHK 1355
>gi|73953679|ref|XP_536399.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Canis lupus
familiaris]
Length = 1390
Score = 289 bits (740), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 209/621 (33%), Positives = 304/621 (48%), Gaps = 57/621 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF RA+ ++ L
Sbjct: 516 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 575
Query: 73 NTEIRT--LPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ +I+ PPTI KP+ LWTGKQ+ S + L P D +R G KQ+
Sbjct: 576 DEKIKVHLPPPTILKPVTLWTGKQIFSVI---LRPSDDNPVRANLRTKG----KQYCGKG 628
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L V D++VTI++ EL+SG +DK GS ++ + + + G A +S LA+L
Sbjct: 629 EDL--CVNDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARL 686
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
VYL GF++G+ D+ Q + + +++N + C+ L+T Q
Sbjct: 687 APVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYK-----KCDEYIEALNTG----KLQ 737
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
Q + A I ++ L + ++ CL E +N+ M G+KGS
Sbjct: 738 QQPGCTAEETLEALILKE----LSVIRDHAGSACLRE----LDKSNSPLTMALCGSKGSF 789
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ +GQ + G R R+LP F + P A GFV F +G+ P EFFF
Sbjct: 790 INISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFF 849
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H MAGREGL+DTAVKT+ +GY+QR LVK LE L YD+TVR S +IQ +YG DGLD
Sbjct: 850 HTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDP 909
Query: 430 TKRQYLTDK-QFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPH 488
+ + +F + DNI K + + LS L+L T K F+
Sbjct: 910 AAMEGKDEPLEFKRVLDNI------KAVFPCQSEPALSKNELVLTTESIMKKTEFLCC-- 961
Query: 489 RTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK 548
+ F ++ + +K +K K +G + V Y
Sbjct: 962 QDSFLQEIKNFVKGISEKIKKTRDK------------------YGINDNGTTEPRVLYQL 1003
Query: 549 GRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
R + ++KF + K + + PG VG L AQSIGEP TQMTL TFHFAG MN+
Sbjct: 1004 DRITPTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNI 1063
Query: 609 TLGIPRLREILMMATKAIKTP 629
TLG+PR++EI+ A+KAI TP
Sbjct: 1064 TLGVPRIKEII-NASKAISTP 1083
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 67/117 (57%), Gaps = 1/117 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N+ + + T GIEAA II E++ +G+ +D RH+ L++D MT+ G + + R G+
Sbjct: 1249 NNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGL 1308
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNR 1009
++ S + +FE + + A+ G++DS+ S +++G GTGLF+L ++
Sbjct: 1309 AKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHK 1365
>gi|355562468|gb|EHH19062.1| hypothetical protein EGK_19701 [Macaca mulatta]
gi|355782811|gb|EHH64732.1| hypothetical protein EGM_18035 [Macaca fascicularis]
gi|380809180|gb|AFE76465.1| DNA-directed RNA polymerase III subunit RPC1 [Macaca mulatta]
gi|383415455|gb|AFH30941.1| DNA-directed RNA polymerase III subunit RPC1 [Macaca mulatta]
gi|383415457|gb|AFH30942.1| DNA-directed RNA polymerase III subunit RPC1 [Macaca mulatta]
gi|383415459|gb|AFH30943.1| DNA-directed RNA polymerase III subunit RPC1 [Macaca mulatta]
gi|383415461|gb|AFH30944.1| DNA-directed RNA polymerase III subunit RPC1 [Macaca mulatta]
gi|383415463|gb|AFH30945.1| DNA-directed RNA polymerase III subunit RPC1 [Macaca mulatta]
Length = 1390
Score = 289 bits (740), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 210/621 (33%), Positives = 304/621 (48%), Gaps = 57/621 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF RA+ ++ L
Sbjct: 516 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 575
Query: 73 NTEI--RTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ +I R PPTI KP+ LWTGKQ+ S + L P D +R G KQ+
Sbjct: 576 DEKIKVRLPPPTILKPVTLWTGKQIFSVI---LRPSDDNPVRANLRTKG----KQYCGKG 628
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L D++VTI++ EL+SG +DK GS ++ + + + G A +S LA+L
Sbjct: 629 EDL--CANDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARL 686
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
VYL GF++G+ D+ Q + + +++N + C+ L+T Q
Sbjct: 687 APVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYK-----KCDEYIEALNTG----KLQ 737
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
Q + A I ++ L + ++ CL E +N+ M G+KGS
Sbjct: 738 QQPGCTAEETLEALILKE----LSVIRDHAGSACLRE----LDKSNSPLTMALCGSKGSF 789
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ +GQ + G R R+LP F + P A GFV F +G+ P EFFF
Sbjct: 790 INISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFF 849
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H MAGREGL+DTAVKT+ +GY+QR LVK LE L YD+TVR S +IQ +YG DGLD
Sbjct: 850 HTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDP 909
Query: 430 TKRQYLTDK-QFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPH 488
+ + +F + DNI K + + LS L+L T K F+
Sbjct: 910 AAMEGKDEPLEFKRVLDNI------KAVFPCPSEPALSKNELILTTESIMKKSEFLCC-- 961
Query: 489 RTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK 548
+ F ++ + + +K +K K +G + V Y
Sbjct: 962 QDSFLQEIKKFIKGVSEKIKKTRDK------------------YGINDNGTTEPRVLYQL 1003
Query: 549 GRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
R + V+KF + K + + PG VG L AQSIGEP TQMTL TFHFAG MN+
Sbjct: 1004 DRITPTQVEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNI 1063
Query: 609 TLGIPRLREILMMATKAIKTP 629
TLG+PR++EI+ A+KAI TP
Sbjct: 1064 TLGVPRIKEII-NASKAISTP 1083
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 67/117 (57%), Gaps = 1/117 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N+ + + T GIEAA II E++ +G+ +D RH+ L++D MT+ G + + R G+
Sbjct: 1249 NNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGL 1308
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNR 1009
++ S + +FE + + A+ G++DS+ S +++G GTGLF+L ++
Sbjct: 1309 AKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHK 1365
>gi|344274310|ref|XP_003408960.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit RPC1-like [Loxodonta africana]
Length = 1392
Score = 289 bits (739), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 209/624 (33%), Positives = 303/624 (48%), Gaps = 63/624 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF RA+ ++ L
Sbjct: 516 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 575
Query: 73 NTEI--RTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ +I R PPTI KP+ LWTGKQ+ S + L P D +R G KQ+
Sbjct: 576 DEKIKVRLPPPTILKPVTLWTGKQIFSVI---LRPSDDNPVRANLRTKG----KQYCGKG 628
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L V D++VTI++ EL+SG +DK GS ++ + + + G A +S LA+L
Sbjct: 629 EDL--CVNDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARL 686
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
VYL GF++G+ D+ Q + +++N + C+ L+T Q
Sbjct: 687 APVYLSNRGFSIGIGDVTPGQGLLTAKYELLNAGYK-----KCDEYIEALNTG----KLQ 737
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
Q + A I ++ L + ++ CL E +N+ M G+KGS
Sbjct: 738 QQPGCTAEETLEALILKE----LSVIRDHAGSACLRE----LDKSNSPLIMALCGSKGSF 789
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ +GQ + G R R+LP F + P A GFV F +G+ P EFFF
Sbjct: 790 INISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFF 849
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H MAGREGL+DTAVKT+ +GY+QR LVK LE L YD+TVR S +IQ +YG DGLD
Sbjct: 850 HTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDP 909
Query: 430 TKRQYLTDK-QFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPH 488
+ + +F + DNIK + F +P S +
Sbjct: 910 AAMEGKDEPLEFKRVLDNIKAV------------------------FPCPSEP--ALSRN 943
Query: 489 RTKFTMDLLEQWYQL---DDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVK 545
TM+ + Q + D ++ +K K + + T +G + V
Sbjct: 944 ELTLTMESIMQKSEFRCCQDSFLQEIKKFVKGVSEKIKKTRD---KYGINDNGTTEPRVL 1000
Query: 546 YTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGD 605
Y R + ++KF + K + + PG VG L AQSIGEP TQMTL TFHFAG
Sbjct: 1001 YQLDRITPTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVAS 1060
Query: 606 MNVTLGIPRLREILMMATKAIKTP 629
MN+TLG+PR++EI+ A+KAI TP
Sbjct: 1061 MNITLGVPRIKEII-NASKAISTP 1083
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 63/109 (57%), Gaps = 1/109 (0%)
Query: 902 TYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFI 960
T GIEAA II E++ +G+ +D RH+ L++D MT+ G + + R G+ ++ S +
Sbjct: 1259 TLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVL 1318
Query: 961 QKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNR 1009
+FE + + A+ G++DS+ S +++G GTGLF+L ++
Sbjct: 1319 MLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHK 1367
>gi|301765986|ref|XP_002918413.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
[Ailuropoda melanoleuca]
Length = 1390
Score = 289 bits (739), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 209/621 (33%), Positives = 304/621 (48%), Gaps = 57/621 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF RA+ ++ L
Sbjct: 516 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 575
Query: 73 NTEIRT--LPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ +I+ PPTI KP+ LWTGKQ+ S + L P D +R G KQ+
Sbjct: 576 DEKIKVHLPPPTILKPVTLWTGKQIFSVI---LRPSDDNPVRANLRTKG----KQYCGKG 628
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L V D++VTI++ EL+SG +DK GS ++ + + + G A +S LA+L
Sbjct: 629 EDL--CVNDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQSEAADAMSRLARL 686
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
VYL GF++G+ D+ Q + + +++N + C+ L+T Q
Sbjct: 687 APVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYK-----KCDEYIEALNTG----KLQ 737
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
Q + A I ++ L + ++ CL E +N+ M G+KGS
Sbjct: 738 QQPGCTAEETLEALILKE----LSVIRDHAGSACLRE----LDKSNSPLTMALCGSKGSF 789
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ +GQ + G R R+LP F + P A GFV F +G+ P EFFF
Sbjct: 790 INISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFF 849
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H MAGREGL+DTAVKT+ +GY+QR LVK LE L YD+TVR S +IQ +YG DGLD
Sbjct: 850 HTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDP 909
Query: 430 TKRQYLTDK-QFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPH 488
+ + +F + DNI K + + LS L+L T K F+
Sbjct: 910 AAMEGKDEPLEFKRVLDNI------KAVFPCQSEPALSKNELVLTTESIMKKTEFLCC-- 961
Query: 489 RTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK 548
+ F ++ + +K +K K +G + V Y
Sbjct: 962 QDSFLQEIKNFVKGVSEKIKKTRDK------------------YGINDNGTTEPRVLYQL 1003
Query: 549 GRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
R + ++KF + K + + PG VG L AQSIGEP TQMTL TFHFAG MN+
Sbjct: 1004 DRITPTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNI 1063
Query: 609 TLGIPRLREILMMATKAIKTP 629
TLG+PR++EI+ A+KAI TP
Sbjct: 1064 TLGVPRIKEII-NASKAISTP 1083
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 67/117 (57%), Gaps = 1/117 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N+ + + T GIEAA II E++ +G+ +D RH+ L++D MT+ G + + R G+
Sbjct: 1249 NNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGL 1308
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNR 1009
++ S + +FE + + A+ G++DS+ S +++G GTGLF+L ++
Sbjct: 1309 AKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHK 1365
>gi|225217014|gb|ACN85301.1| putative RNA polymerase A(I) large subunit [Oryza coarctata]
Length = 1830
Score = 289 bits (739), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 199/573 (34%), Positives = 284/573 (49%), Gaps = 126/573 (21%)
Query: 290 EPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPR 349
+PFP N L M ++GAKG VN QIS LLGQ ELEGKR M+SG+TLP F P++ S R
Sbjct: 989 KPFPGNCLSLMTQTGAKGGLVNMTQISSLLGQQELEGKRVPRMISGKTLPCFPPWDTSSR 1048
Query: 350 AGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMT 409
AGGF+ RF+TG++PQE++FHCMAGREGL+DTAVKTSRSGYLQRCL+K LE L V YD T
Sbjct: 1049 AGGFISDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKSLESLKVSYDHT 1108
Query: 410 VRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLAL 469
YGEDG+DV K +L +F L DN + +L+ L H L
Sbjct: 1109 ----------FCYGEDGVDVLKTSFL--DKFRELSDN------RRAVLDKLDSHNDKHLL 1150
Query: 470 LLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPD 529
PN S K + + ++ + ++K R R+
Sbjct: 1151 ---------SNPNGYISELPAKLIENAM-KFLKENEKGRYDIRE---------------- 1184
Query: 530 AHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEP 589
+ ++K K + +S VD PGE VGV+AAQSIGEP
Sbjct: 1185 -----------EELMKLLKVKYLSSLVD----------------PGEAVGVVAAQSIGEP 1217
Query: 590 STQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKL------- 642
STQMTLNTFH AGRG++NVTLGIPRL+EILM A+ I TP M+ P + +
Sbjct: 1218 STQMTLNTFHLAGRGELNVTLGIPRLKEILMTASDKISTPFMKCPLIKTKTRFIPVVIYI 1277
Query: 643 -----------------EKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMN----- 680
A R+A + R+ +ADVLE++ E+ P N
Sbjct: 1278 SLYTCFLHFSWSVEYDERNDAERIAAKLRRVHVADVLERI------EVCTVPFHNNNGCV 1331
Query: 681 ---YQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKR--------AAQGLK 729
Y+++ P +Y + + + + F+ +++AI+K Q +K
Sbjct: 1332 STLYKLQMKLYPKELYPPQLELTVDECQETLRTVFIDAMDLAISKHLDLLHKINDIQAVK 1391
Query: 730 NMNIEQSRDQMEDDVEDDE-GEGAEGAGAALGRV--DVSSDEER---DEEDAVQSHKKVN 783
+ ++E Q+ D VE+ E G E G + G D+ +D E+ E D ++
Sbjct: 1392 SNDMES---QLSDGVEESENGPTDEDNGVSDGENEDDLGADAEKWKQQERDEMEYDDDAE 1448
Query: 784 QEEDNDFEEPEDEERMSEREEDDNTSNIGERFK 816
+EE D + +E+ + E +D+ + +G+ +
Sbjct: 1449 KEEGLDMDSESEEDAKFKPESEDDRAELGKELE 1481
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/262 (32%), Positives = 135/262 (51%), Gaps = 59/262 (22%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA +++ + QY+ P+ G + GLIQDH++ L+ DTFL+R EY LVY + C+L
Sbjct: 606 RAEAINIVDANKQYIGPRSGDAVRGLIQDHIVGAVLLTKLDTFLSREEYNQLVYGS-CVL 664
Query: 73 NTEIRT------------------LPPTIWKPMPLWTGKQVLSTVIINLTPKDK--VIIR 112
++ R+ +PP IWKP PLWTGKQV++T++ ++T + +
Sbjct: 665 SSARRSGQFGKKISIIMDDDVLEPVPPAIWKPKPLWTGKQVITTILNHVTKGHPPFTVEQ 724
Query: 113 HGELLSG-ILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVW 171
G++ ++ KK G+ V + + + + EL+ G++DK QFG +YG+VH V
Sbjct: 725 QGKISKEYLIPKKCDGAKDKTRVPS--ELVLYVHDNELIKGMIDKAQFG--KYGIVHTVH 780
Query: 172 DTHGAEHAISLLSCLAKLFTVYLQ--------------------------RV-------G 198
+ +G E A LLS ++LFT+ LQ R G
Sbjct: 781 ELYGPETAGVLLSAFSRLFTIVLQIRGFVELGITNSKKSWIQSCAKRGELRTFIFFQLHG 840
Query: 199 FTLGVRDILVRQERDRKRTKII 220
FT GV D+L+ QE D+ R +I+
Sbjct: 841 FTCGVDDLLLCQESDKLRKEIL 862
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 84/140 (60%), Gaps = 1/140 (0%)
Query: 868 LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 927
L+T G+N LD+N++ NDIH M YG+EAA II+EV VF+ YGI V
Sbjct: 1679 FLQTAGVNFEVFWNLVDYLDINEIRSNDIHAMLKIYGVEAARATIIQEVSGVFSAYGINV 1738
Query: 928 DPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRA 986
D RHL+++AD+MT G Y M+R G+ + + S KMTFE + I +A+ G D+L
Sbjct: 1739 DMRHLNMIADFMTFDGGYRPMSRQGMGQFSTSPFGKMTFETATKFIVEAASHGESDTLDG 1798
Query: 987 PSARVMLGQECRQGTGLFQL 1006
PSA + LG+ + GTG F L
Sbjct: 1799 PSASICLGKPVKMGTGSFGL 1818
>gi|449269147|gb|EMC79953.1| DNA-directed RNA polymerase III subunit RPC1, partial [Columba livia]
Length = 1375
Score = 289 bits (739), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 210/621 (33%), Positives = 306/621 (49%), Gaps = 57/621 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF RA+ ++ L
Sbjct: 501 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 560
Query: 73 NTEI--RTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ +I R PP I KP+ LWTGKQV S + L P D ++ G KQ+
Sbjct: 561 DEKIKVRLPPPAILKPVTLWTGKQVFSLI---LKPSDDCPVKANLRTKG----KQYCGKG 613
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L + D++VTI++ EL+SG +DK GS ++ + + + G A +S LA+L
Sbjct: 614 EDLCYN--DSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQVEAADAMSRLARL 671
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
VYL GF++G+ D+ Q + + +++N + C+ L+T Q
Sbjct: 672 APVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYK-----KCDEYIEALNTG----KLQ 722
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
Q + A I ++ L + ++ CL E +N+ M G+KGS
Sbjct: 723 QQPGCTAEETLEALILKE----LSVIRDHAGSACLRE----LDKSNSPLIMALCGSKGSF 774
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ +GQ + G R R+LP F + P A GFV F +G+ P EFFF
Sbjct: 775 INISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFF 834
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H MAGREGL+DTAVKT+ +GY+QR LVK LE L YD+TVR S +IQ +YG DGLD
Sbjct: 835 HTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDP 894
Query: 430 TKRQYLTDK-QFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPH 488
+ + +F + DNI+ + + L K L+LT +S K N F
Sbjct: 895 AAMEGKDEPLEFKRVLDNIRAVYPCRSEPALSKNE-------LVLTSESIMKKNE-FLCC 946
Query: 489 RTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK 548
R F ++ + + +K +K K +G + V Y
Sbjct: 947 RDSFLQEIKKFIKGVSEKIKKTRDK------------------YGINDNGTTEPQVLYQL 988
Query: 549 GRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
R + ++KF + K + + PG VG L AQSIGEP TQMTL TFHFAG MN+
Sbjct: 989 DRITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNI 1048
Query: 609 TLGIPRLREILMMATKAIKTP 629
TLG+PR++EI+ A+KAI TP
Sbjct: 1049 TLGVPRIKEII-NASKAISTP 1068
Score = 69.7 bits (169), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 81/151 (53%), Gaps = 2/151 (1%)
Query: 864 ESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
+ K+ L +G N+ + H + K N+ + + T GIEAA II E++ +
Sbjct: 1205 KEKYKLLVEGDNLRAV-MATHGVKGTKTSSNNTYEVEKTLGIEAARTTIINEIQYTMVNH 1263
Query: 924 GIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGRED 982
G+ +D RH+ L++D MT+ G + + R G+ ++ S + +FE + + A+ G++D
Sbjct: 1264 GMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKD 1323
Query: 983 SLRAPSARVMLGQECRQGTGLFQLRNREKKK 1013
S+ S +++G GTGLF+L ++ K+
Sbjct: 1324 SVCGVSECIIMGIPMNIGTGLFKLLHKADKE 1354
>gi|291404119|ref|XP_002718445.1| PREDICTED: polymerase (RNA) III (DNA directed) polypeptide A, 155kDa
[Oryctolagus cuniculus]
Length = 1390
Score = 289 bits (739), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 209/621 (33%), Positives = 306/621 (49%), Gaps = 57/621 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF RA+ ++ L
Sbjct: 516 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 575
Query: 73 NTEI--RTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ +I R PPTI KP+ LWTGKQ+ S + L P D +R G KQ+
Sbjct: 576 DEKIKVRLPPPTILKPVTLWTGKQIFSVI---LRPSDDSPVRANLRTKG----KQYCGKG 628
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L V D++VTI++ EL+SG +DK GS ++ + + + G A +S LA+L
Sbjct: 629 EDL--CVNDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARL 686
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
VYL GF++G+ D+ Q + + +++N + C+ L+T Q
Sbjct: 687 APVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYK-----KCDEYIEALNTG----KLQ 737
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
Q + A I ++ L + ++ CL E +N+ M G+KGS
Sbjct: 738 QQPGCTAEETLEALILKE----LSVIRDHAGSACLRE----LDKSNSPLTMALCGSKGSF 789
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ +GQ + G R R+LP F + P A GFV F +G+ P EFFF
Sbjct: 790 INISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFF 849
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H MAGREGL+DTAVKT+ +GY+QR LVK LE L YD+TVR S +IQ +YG DGLD
Sbjct: 850 HTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDP 909
Query: 430 TKRQYLTDK-QFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPH 488
+ + +F + DNI+ + + L K L+LT ++ K N
Sbjct: 910 AAMEGKDEPLEFKRVLDNIRAVFPCQNEPALSKNE-------LILTSEAIMKKN------ 956
Query: 489 RTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK 548
++ D ++ +K K + + T +G + V Y
Sbjct: 957 ----------EFLCCQDSFLQEIKKFIKGVSERIKKTRD---KYGINDNGTTEPRVLYQL 1003
Query: 549 GRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
R + ++KF + K + + PG VG L AQSIGEP TQMTL TFHFAG MN+
Sbjct: 1004 DRITPTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNI 1063
Query: 609 TLGIPRLREILMMATKAIKTP 629
TLG+PR++EI+ A+KAI TP
Sbjct: 1064 TLGVPRIKEII-NASKAISTP 1083
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 68/120 (56%), Gaps = 1/120 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N+ + + T GIEAA II E++ +G+ +D RH+ L++D MT+ G + + R G+
Sbjct: 1249 NNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGL 1308
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNREKK 1012
++ S + +FE + + A+ G++DS+ S +++G GTGLF+L ++ +
Sbjct: 1309 AKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKANR 1368
>gi|281340311|gb|EFB15895.1| hypothetical protein PANDA_006866 [Ailuropoda melanoleuca]
Length = 1375
Score = 288 bits (738), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 209/621 (33%), Positives = 304/621 (48%), Gaps = 57/621 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF RA+ ++ L
Sbjct: 501 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 560
Query: 73 NTEIRT--LPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ +I+ PPTI KP+ LWTGKQ+ S + L P D +R G KQ+
Sbjct: 561 DEKIKVHLPPPTILKPVTLWTGKQIFSVI---LRPSDDNPVRANLRTKG----KQYCGKG 613
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L V D++VTI++ EL+SG +DK GS ++ + + + G A +S LA+L
Sbjct: 614 EDL--CVNDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQSEAADAMSRLARL 671
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
VYL GF++G+ D+ Q + + +++N + C+ L+T Q
Sbjct: 672 APVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYK-----KCDEYIEALNTG----KLQ 722
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
Q + A I ++ L + ++ CL E +N+ M G+KGS
Sbjct: 723 QQPGCTAEETLEALILKE----LSVIRDHAGSACLRE----LDKSNSPLTMALCGSKGSF 774
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ +GQ + G R R+LP F + P A GFV F +G+ P EFFF
Sbjct: 775 INISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFF 834
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H MAGREGL+DTAVKT+ +GY+QR LVK LE L YD+TVR S +IQ +YG DGLD
Sbjct: 835 HTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDP 894
Query: 430 TKRQYLTDK-QFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPH 488
+ + +F + DNI K + + LS L+L T K F+
Sbjct: 895 AAMEGKDEPLEFKRVLDNI------KAVFPCQSEPALSKNELVLTTESIMKKTEFLCC-- 946
Query: 489 RTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK 548
+ F ++ + +K +K K +G + V Y
Sbjct: 947 QDSFLQEIKNFVKGVSEKIKKTRDK------------------YGINDNGTTEPRVLYQL 988
Query: 549 GRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
R + ++KF + K + + PG VG L AQSIGEP TQMTL TFHFAG MN+
Sbjct: 989 DRITPTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNI 1048
Query: 609 TLGIPRLREILMMATKAIKTP 629
TLG+PR++EI+ A+KAI TP
Sbjct: 1049 TLGVPRIKEII-NASKAISTP 1068
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 67/117 (57%), Gaps = 1/117 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N+ + + T GIEAA II E++ +G+ +D RH+ L++D MT+ G + + R G+
Sbjct: 1234 NNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGL 1293
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNR 1009
++ S + +FE + + A+ G++DS+ S +++G GTGLF+L ++
Sbjct: 1294 AKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHK 1350
>gi|432115682|gb|ELK36917.1| DNA-directed RNA polymerase III subunit RPC1 [Myotis davidii]
Length = 951
Score = 288 bits (738), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 209/621 (33%), Positives = 304/621 (48%), Gaps = 57/621 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF RA+ ++ L
Sbjct: 77 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 136
Query: 73 NTEI--RTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ +I R PPTI KP+ LWTGKQ+ S + L P D +R G KQ+
Sbjct: 137 DEKIKVRLPPPTILKPVTLWTGKQIFSVI---LRPSDDNPVRANLRTKG----KQYCGKG 189
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L + D++VTI++ EL+SG +DK GS ++ + + + G A +S LA+L
Sbjct: 190 EDL--CINDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARL 247
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
VYL GF++G+ D+ Q + + +++N + C+ L+T Q
Sbjct: 248 APVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYK-----KCDEYIEALNTG----KLQ 298
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
Q + A I ++ L + ++ CL E +N+ M G+KGS
Sbjct: 299 QQPGCTAEETLEALILKE----LSVIRDHAGSACLRE----LDKSNSPLTMALCGSKGSF 350
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ +GQ + G R R+LP F + P A GFV F +G+ P EFFF
Sbjct: 351 INISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFF 410
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H MAGREGL+DTAVKT+ +GY+QR LVK LE L YD+TVR S +IQ +YG DGLD
Sbjct: 411 HTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDP 470
Query: 430 TKRQYLTDK-QFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPH 488
+ + +F + DNIK + + LS L+L T K F+
Sbjct: 471 AAMEGKDEPLEFKRVLDNIK------AVFPCQSEPALSKNELVLSTESIMKKHEFLCC-- 522
Query: 489 RTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK 548
+ F ++ + +K +K K +G + V Y
Sbjct: 523 QDSFLQEIKNFIKGVSEKIKKTRDK------------------YGINDNGTTEPRVLYQL 564
Query: 549 GRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
R + ++KF + K + + PG VG L AQSIGEP TQMTL TFHFAG MN+
Sbjct: 565 DRITPTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNI 624
Query: 609 TLGIPRLREILMMATKAIKTP 629
TLG+PR++EI+ A+KAI TP
Sbjct: 625 TLGVPRIKEII-NASKAISTP 644
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 79/148 (53%), Gaps = 2/148 (1%)
Query: 866 KHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 925
K+ L +G N+ + H + + N+ + + T GIEAA II E++ +G+
Sbjct: 783 KYKLLVEGDNLRAV-MATHGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGM 841
Query: 926 EVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSL 984
+D RH+ L++D MT+ G + + R G+ ++ S + +FE + + A+ G++DS+
Sbjct: 842 SIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSV 901
Query: 985 RAPSARVMLGQECRQGTGLFQLRNREKK 1012
S +++G GTGLF+L ++ +
Sbjct: 902 CGVSECIIMGIPMNIGTGLFKLLHKANR 929
>gi|395820429|ref|XP_003783569.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Otolemur
garnettii]
Length = 1390
Score = 288 bits (738), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 211/621 (33%), Positives = 303/621 (48%), Gaps = 57/621 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF RA+ ++ L
Sbjct: 516 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 575
Query: 73 NTEI--RTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ +I R PPTI KP+ LWTGKQ+ S + L P D +R G KQ+
Sbjct: 576 DEKIKVRLPPPTILKPVTLWTGKQIFSVI---LRPSDDNPVRANLRTKG----KQYCGKG 628
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L V D++VTI++ EL+ G +DK GS ++ + + + G A +S LA+L
Sbjct: 629 EDL--CVNDSYVTIQNSELMCGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARL 686
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
VYL GF++G+ D+ Q + +++N + C+ L+T Q
Sbjct: 687 APVYLSNRGFSIGIGDVTPGQGLLTAKYELLNAGYK-----KCDEYIEALNTG----KLQ 737
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
Q + A I ++ L + ++ CL E +N+ M G+KGS
Sbjct: 738 QQPGCTAEETLEALILKE----LSVIRDHAGSACLRE----LDKSNSPLTMALCGSKGSF 789
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ +GQ + G R R+LP F + P A GFV F +G+ P EFFF
Sbjct: 790 INISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFF 849
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H MAGREGL+DTAVKT+ +GY+QR LVK LE L YD+TVR S +IQ +YG DGLD
Sbjct: 850 HTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDP 909
Query: 430 TKRQYLTDK-QFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPH 488
+ + +F + DNIK + L K L+LT +S K N
Sbjct: 910 AAMEGKDEPLEFKRVLDNIKAVFPCPSERALSKNE-------LILTTESIMKKN------ 956
Query: 489 RTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK 548
++ D ++ +K K + + T +G + V Y
Sbjct: 957 ----------EFLCCQDSFLQEIKKFIKGVSEKIKKTRD---KYGINDNGTTEPRVLYQL 1003
Query: 549 GRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
R + V+KF + K + + PG VG L AQSIGEP TQMTL TFHFAG MN+
Sbjct: 1004 DRITPTQVEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNI 1063
Query: 609 TLGIPRLREILMMATKAIKTP 629
TLG+PR++EI+ A+KAI TP
Sbjct: 1064 TLGVPRIKEII-NASKAISTP 1083
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 68/120 (56%), Gaps = 1/120 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N+ + + T GIEAA II E++ +G+ +D RH+ L++D MT+ G + + R G+
Sbjct: 1249 NNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGL 1308
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNREKK 1012
++ S + +FE + + A+ G++DS+ S +++G GTGLF+L ++ +
Sbjct: 1309 AKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKANR 1368
>gi|2460208|gb|AAB86536.1| RNA polymerase III largest subunit [Homo sapiens]
Length = 1391
Score = 288 bits (737), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 209/621 (33%), Positives = 303/621 (48%), Gaps = 57/621 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF RA+ ++ L
Sbjct: 516 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 575
Query: 73 NTEI--RTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ +I R PPTI KP+ LWTGKQ+ S + L P D +R G KQ+
Sbjct: 576 DEKIKVRLPPPTILKPVTLWTGKQIFSVI---LRPSDDNPVRANLRTKG----KQYCGKG 628
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L D++VTI++ EL+SG +DK GS ++ + + + G A +S LA+L
Sbjct: 629 EDL--CANDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARL 686
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
VYL GF++G+ D+ Q + + +++N + C+ L+T Q
Sbjct: 687 APVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYK-----KCDEYIEALNTG----KLQ 737
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
Q + A I ++ L + ++ CL E +N+ M G+KGS
Sbjct: 738 QQPGCTAEETLEALILKE----LSVIRDHAGSACLRE----LDKSNSPLTMALCGSKGSF 789
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ +GQ + G R R+LP F + P A GFV F +G+ P EFFF
Sbjct: 790 INISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFF 849
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H MAGREGL+DTAVKT+ +GY+QR LVK LE L YD+TVR S +IQ +YG DGLD
Sbjct: 850 HTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDP 909
Query: 430 TKRQYLTDK-QFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPH 488
+ + +F + DNI K + + LS L+L T K F+
Sbjct: 910 AAMEGKDEPLEFKRVLDNI------KAVFPCPSEPALSKNELILTTESIMKKSEFLCC-- 961
Query: 489 RTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK 548
+ F ++ + + +K +K K +G + V Y
Sbjct: 962 QDSFLQEIKKFIKGVSEKIKKTRDK------------------YGINDNGTTEPRVLYQL 1003
Query: 549 GRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
R + V+KF + K + + PG VG L AQSIGEP TQMTL TFHF G MN+
Sbjct: 1004 DRITPTQVEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFGGVASMNI 1063
Query: 609 TLGIPRLREILMMATKAIKTP 629
TLG+PR++EI+ A+KAI TP
Sbjct: 1064 TLGVPRIKEII-NASKAISTP 1083
Score = 66.2 bits (160), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 68/118 (57%), Gaps = 2/118 (1%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAV-YGIEVDPRHLSLVADYMTHSGTYVAMNRNG 952
N+ + + T GIEAA II E++ V +G+ +D RH+ L++D MT+ G + + R G
Sbjct: 1249 NNTYEVEKTLGIEAARTTIINEIQYTMVVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFG 1308
Query: 953 I-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNR 1009
+ ++ S + +FE + + A+ G++DS+ S +++G GTGLF+L ++
Sbjct: 1309 LAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHK 1366
>gi|294876122|ref|XP_002767562.1| DNA-directed RNA polymerase II largest subunit, putative [Perkinsus
marinus ATCC 50983]
gi|239869222|gb|EER00280.1| DNA-directed RNA polymerase II largest subunit, putative [Perkinsus
marinus ATCC 50983]
Length = 1667
Score = 288 bits (737), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 209/719 (29%), Positives = 335/719 (46%), Gaps = 106/719 (14%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
SH +AE +M V Q + P+ P+ G++QD +++ L+ RDTF+ + M L+
Sbjct: 519 SHETRAEIRNIMMVPRQVVSPQGNRPVMGIVQDSLLASTLLTKRDTFIEKDMCMQLLMW- 577
Query: 69 LCILNTEIRTLP-PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
L + + +P P I KP PLW+GKQ+ S ++ ++ + +GI K +
Sbjct: 578 LLPASWDGGNMPMPCILKPRPLWSGKQLFSMLLPKISLQKD---------AGIASKNRGD 628
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
+ + D V I+ GE++SG++ KK G++ GL+H W +G E + +
Sbjct: 629 DPWF----SRSDCRVIIQEGEIMSGVICKKTVGASSGGLIHITWLDYGPERTKQFIGGIQ 684
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIIS 247
+L +L GFT+G DI+ +K + +A+R + +A L+ P
Sbjct: 685 RLVNFWLLHHGFTVGCADIVANDGTMQKVADTLAQAKRDVRKLVLDAQRGRLEAQP---G 741
Query: 248 SQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFP---ANNLQFMVESG 304
LQ+++ + +V +NQ G + NN+ MV+SG
Sbjct: 742 KSLQQSFEA-----------------RVNQRLNQAREDSGRLAADSLDDKNNIIAMVDSG 784
Query: 305 AKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQP 364
+KG+ +N QI +GQ +EGKR RTLP F + P + GFV+ ++ G+ P
Sbjct: 785 SKGNPINIAQIIACVGQQNVEGKRIPTGFRDRTLPHFTKDDFGPESRGFVENSYLAGLTP 844
Query: 365 QEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGE 424
QEFFFH M GREG+IDTA KT+ +GY+QR L+K +E + V YD +VR+ ++Q LYGE
Sbjct: 845 QEFFFHAMGGREGIIDTACKTAETGYIQRRLIKSMESIKVRYDGSVRNEMDEVVQFLYGE 904
Query: 425 DGLD---------------------VTKRQYLT--------------------------- 436
DG+ + K YL
Sbjct: 905 DGMTAEYIEDQDIELMKISHERLAAIAKHDYLNPDYGRGWIKDEKVRSNIRMNHEVQAVL 964
Query: 437 DKQFSFLEDNIKWICSYKVILNLLKKH-PLSLALLL---LLTFKSSGKPNFIFSPH---- 488
D++F L++ + +C+ ++H P+++ L+ F + P+ + P
Sbjct: 965 DREFENLKEMKRLLCTKVYKDGESRQHIPINVRRLIDQCHYLFPAEEDPDVFYPPQEVVQ 1024
Query: 489 RTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK 548
+ + T+D L L D + + A Q + S L + +
Sbjct: 1025 KVEETLDRLRVIRGLTDDQVLGWEAQHNA-----TVVLQAHLRYHLASRKLLE------R 1073
Query: 549 GRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
R VD + + SL GE+VG +AAQSIGEP+TQMTLNTFHFAG G NV
Sbjct: 1074 DRLGQRAVDWLLGEVEQRFEKSLVAAGESVGTIAAQSIGEPATQMTLNTFHFAGVGSKNV 1133
Query: 609 TLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKI 667
TLG+PRL+EI+ +A K +KTPSM + PD + KA ++ + ++ + +I
Sbjct: 1134 TLGVPRLKEIINVA-KNLKTPSMTVYLHPDYASDDAKAKQVQSELEHTSLGKITSYTQI 1191
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 73/140 (52%), Gaps = 2/140 (1%)
Query: 868 LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 927
+L TDG N+ + +D + + NDI + + GIEA + ++ E++ V + G V
Sbjct: 1362 VLDTDGCNLEQVLTM-EAVDSTRTFSNDIVEILNVLGIEACRKALLNELRQVISFDGSYV 1420
Query: 928 DPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRA 986
+ RH+S++ D M G +++ R+GI R+ + + +FE +E + A+ D +R
Sbjct: 1421 NYRHMSVLCDTMCQKGHLMSITRHGINRVERGPLMRSSFEEMVEMLMDAACYAETDHMRG 1480
Query: 987 PSARVMLGQECRQGTGLFQL 1006
S +MLGQ GT +L
Sbjct: 1481 VSENIMLGQLAPIGTAECEL 1500
>gi|395501590|ref|XP_003755175.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Sarcophilus
harrisii]
Length = 1390
Score = 288 bits (736), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 212/622 (34%), Positives = 309/622 (49%), Gaps = 59/622 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF RA+ ++ L
Sbjct: 516 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 575
Query: 73 NTEI--RTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ +I R PP I KP+ LWTGKQV S + L P D+ +R G KQ+
Sbjct: 576 DEKIKVRLPPPAILKPVTLWTGKQVFSLI---LQPSDENPVRANLRTKG----KQYCGRG 628
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L V D++VTI++ EL+SG +DK GS ++ + + + G A +S LA+L
Sbjct: 629 EDL--CVNDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQIEAADAMSRLARL 686
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
VYL GF++G+ D+ Q + + +++ + C+ L+T Q
Sbjct: 687 APVYLSNRGFSIGIGDVTPGQGLLKAKYELLTAGYK-----KCDEYIEALNTG----KLQ 737
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
Q + A I ++ + D N CL E +N+ M G+KGS
Sbjct: 738 QQPGCTAEETLEALILKELSVIRDHAGN----ACLRE----LDKSNSPLTMALCGSKGSF 789
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ +GQ + G R R+LP F + P A GFV F +G+ P EFFF
Sbjct: 790 INISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFF 849
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H MAGREGL+DTAVKT+ +GY+QR LVK LE L YD+TVR S +IQ +YG DGLD
Sbjct: 850 HTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDP 909
Query: 430 TKRQYLTDK-QFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPH 488
+ + +F + DNIK + + L K L+LT +S K N
Sbjct: 910 AAMEGKDEPLEFKRVLDNIKAVFPCQSEPALSKNE-------LVLTTESIMKRNEFLCCQ 962
Query: 489 RTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISEN-LADSVVKYT 547
+ + ++++ ++ + KK R K+ I++N + V Y
Sbjct: 963 DS--FLQEIKKFIKVVSEKIKKTRDKY------------------GINDNGTTEPRVLYQ 1002
Query: 548 KGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMN 607
R + ++KF + K + + PG VG L AQSIGEP TQMTL TFHFAG MN
Sbjct: 1003 LDRITPTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMN 1062
Query: 608 VTLGIPRLREILMMATKAIKTP 629
+TLG+PR++EI+ A+KAI TP
Sbjct: 1063 ITLGVPRIKEII-NASKAISTP 1083
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 79/147 (53%), Gaps = 2/147 (1%)
Query: 864 ESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
+ K+ L +G N+ + H + K N+ + + T GIEAA II E++ +
Sbjct: 1220 KEKYKLLVEGDNLRAV-MATHGVQGTKTTSNNTYEVEKTLGIEAARSTIINEIQYTMVNH 1278
Query: 924 GIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGRED 982
G+ +D RH+ L++D MT+ G + + R G+ ++ S + +FE + + A+ G++D
Sbjct: 1279 GMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKD 1338
Query: 983 SLRAPSARVMLGQECRQGTGLFQLRNR 1009
S+ S +++G GTGLF+L ++
Sbjct: 1339 SVCGVSECIIMGIPMNIGTGLFKLLHK 1365
>gi|449504974|ref|XP_004174828.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 isoform 2
[Taeniopygia guttata]
Length = 1369
Score = 288 bits (736), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 208/621 (33%), Positives = 305/621 (49%), Gaps = 57/621 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF RA+ ++ L
Sbjct: 495 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 554
Query: 73 NTEI--RTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ +I R PP I KP+ LWTGKQV S + L P D ++ G KQ+
Sbjct: 555 DEKIKVRLPPPAILKPVTLWTGKQVFSLI---LKPSDDCPVKANLRTKG----KQYCGKG 607
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L + D++VTI++ EL+SG +DK GS ++ + + + G A +S LA+L
Sbjct: 608 EDLCYN--DSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQVEAADAMSRLARL 665
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
VYL GF++G+ D+ Q + + +++N + C+ L+T Q
Sbjct: 666 APVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYK-----KCDEYIEALNTG----KLQ 716
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
Q + A I ++ L + ++ CL E +N+ M G+KGS
Sbjct: 717 QQPGCTAEETLEALILKE----LSVIRDHAGSACLRE----LDKSNSPLIMALCGSKGSF 768
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ +GQ + G R R+LP F + P A GFV F +G+ P EFFF
Sbjct: 769 INISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFF 828
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H MAGREGL+DTAVKT+ +GY+QR LVK LE L YD+TVR S +IQ +YG DGLD
Sbjct: 829 HTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDP 888
Query: 430 TKRQYLTDK-QFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPH 488
+ + +F + DNI+ + + L K L+LT +S K N
Sbjct: 889 AAMEGKDEPLEFKRVLDNIRAVYPCRSEPALSKNE-------LVLTSESIMKKN------ 935
Query: 489 RTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK 548
++ D ++ +K K + + T +G + V Y
Sbjct: 936 ----------EFLCCQDSFLQEIKKFIKGVSEKIKKTRD---KYGINDNGTTEPRVLYQL 982
Query: 549 GRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
R + ++KF + K + + PG VG L AQSIGEP TQMTL TFHFAG MN+
Sbjct: 983 DRITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNI 1042
Query: 609 TLGIPRLREILMMATKAIKTP 629
TLG+PR++EI+ A+KAI TP
Sbjct: 1043 TLGVPRIKEII-NASKAISTP 1062
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 81/151 (53%), Gaps = 2/151 (1%)
Query: 864 ESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
+ K+ L +G N+ + H + K N+ + + T GIEAA II E++ +
Sbjct: 1199 KEKYKLLVEGDNLRAV-MATHGVKGTKTSSNNTYEVEKTLGIEAARTTIINEIQYTMVNH 1257
Query: 924 GIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGRED 982
G+ +D RH+ L++D MT+ G + + R G+ ++ S + +FE + + A+ G++D
Sbjct: 1258 GMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKD 1317
Query: 983 SLRAPSARVMLGQECRQGTGLFQLRNREKKK 1013
S+ S +++G GTGLF+L +R K+
Sbjct: 1318 SVCGVSECIIMGIPMNIGTGLFKLLHRADKE 1348
>gi|441657982|ref|XP_003274523.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Nomascus
leucogenys]
Length = 1275
Score = 288 bits (736), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 209/621 (33%), Positives = 304/621 (48%), Gaps = 57/621 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF RA+ ++ L
Sbjct: 371 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 430
Query: 73 NTEI--RTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ +I R PPTI KP+ LWTGKQ+ S + L P + +R G KQ+
Sbjct: 431 DEKIKVRLPPPTILKPVTLWTGKQIFSVI---LRPSNDNPVRANLRTKG----KQYCGKG 483
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L D++VTI++ EL+SG +DK GS ++ + + + G A +S LA+L
Sbjct: 484 EDL--CANDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARL 541
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
VYL GF++G+ D+ Q + + +++N + C+ L+T Q
Sbjct: 542 APVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYK-----KCDEYIEALNTG----KLQ 592
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
Q + A I ++ L + ++ CL E +N+ M G+KGS
Sbjct: 593 QQPGCTAEETLEALILKE----LSVIRDHAGSACLRE----LDKSNSPLTMALCGSKGSF 644
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ +GQ + G R R+LP F + P A GFV F +G+ P EFFF
Sbjct: 645 INISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFF 704
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H MAGREGL+DTAVKT+ +GY+QR LVK LE L YD+TVR S +IQ +YG DGLD
Sbjct: 705 HTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDP 764
Query: 430 TKRQYLTDK-QFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPH 488
+ + +F + DNI K + + LS L+L T K F+
Sbjct: 765 AAMEGKDEPLEFKRVLDNI------KAVFPCPSEPALSKNELILTTESIMKKSEFLCC-- 816
Query: 489 RTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK 548
+ F ++ + + +K +K K +G + V Y
Sbjct: 817 QDSFLQEIKKFIKGVSEKIKKTRDK------------------YGINDNGTTEPRVLYQL 858
Query: 549 GRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
R + V+KF + K + + PG VG L AQSIGEP TQMTL TFHFAG MN+
Sbjct: 859 DRITPTQVEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNI 918
Query: 609 TLGIPRLREILMMATKAIKTP 629
TLG+PR++EI+ A+KAI TP
Sbjct: 919 TLGVPRIKEII-NASKAISTP 938
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 85/168 (50%), Gaps = 23/168 (13%)
Query: 843 DKKNHMWCKLLFLPSNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMAST 902
+ K+ M+ L FL +L + K+ L++T +HL + K T
Sbjct: 1105 NSKSSMYYVLQFLKEDLPKVKQQSLLMET-----------QHLPVVEK-----------T 1142
Query: 903 YGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQ 961
GIEAA II E++ +G+ +D RH+ L++D MT+ G + + R G+ ++ S +
Sbjct: 1143 LGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLM 1202
Query: 962 KMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNR 1009
+FE + + A+ G++DS+ S +++G GTGLF+L ++
Sbjct: 1203 LASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHK 1250
>gi|57529842|ref|NP_001006500.1| DNA-directed RNA polymerase III subunit RPC1 [Gallus gallus]
gi|75571385|sp|Q5ZL98.1|RPC1_CHICK RecName: Full=DNA-directed RNA polymerase III subunit RPC1; Short=RNA
polymerase III subunit C1; AltName: Full=DNA-directed RNA
polymerase III subunit A
gi|53130332|emb|CAG31495.1| hypothetical protein RCJMB04_7b9 [Gallus gallus]
Length = 1390
Score = 287 bits (735), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 209/621 (33%), Positives = 307/621 (49%), Gaps = 57/621 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF RA+ ++ L
Sbjct: 516 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 575
Query: 73 NTEI--RTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ +I R PP I KP+ LWTGKQV S++ L P D ++ G KQ+
Sbjct: 576 DEKIKVRLPPPAILKPVTLWTGKQVFSSI---LKPSDDCPVKANLRTKG----KQYCGKG 628
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L + D++VTI++ EL+SG +DK GS ++ + + + G A +S LA+L
Sbjct: 629 EDLCYN--DSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQVEAADAMSRLARL 686
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
VYL GF++G+ D+ Q + + ++++ + C+ L+T Q
Sbjct: 687 APVYLSNRGFSIGIGDVTPGQGLLKAKYELLHAGYK-----KCDEYIEALNTG----KLQ 737
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
Q + A I ++ L + ++ CL E +N+ M G+KGS
Sbjct: 738 QQPGCTAEETLEALILKE----LSVIRDHAGSACLRE----LDKSNSPLIMALCGSKGSF 789
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ +GQ + G R R+LP F + P A GFV F +G+ P EFFF
Sbjct: 790 INISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFF 849
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H MAGREGL+DTAVKT+ +GY+QR LVK LE L YD+TVR S +IQ +YG DGLD
Sbjct: 850 HTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDP 909
Query: 430 TKRQYLTDK-QFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPH 488
+ + +F + DNI+ + + L K L+LT +S K N F
Sbjct: 910 AAMEGKDEPLEFKRVLDNIRAVYPCRSEPALSKNE-------LVLTSESIMKKNE-FLCC 961
Query: 489 RTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK 548
R F ++ + + +K +K K +G + V Y
Sbjct: 962 RDSFLQEIKKFIKGVSEKIKKTRDK------------------YGINDNGTTEPRVLYQL 1003
Query: 549 GRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
R + ++KF + K + + PG VG L AQSIGEP TQMTL TFHFAG MN+
Sbjct: 1004 DRITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNI 1063
Query: 609 TLGIPRLREILMMATKAIKTP 629
TLG+PR++EI+ A+KAI TP
Sbjct: 1064 TLGVPRIKEII-NASKAISTP 1083
Score = 69.3 bits (168), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 81/151 (53%), Gaps = 2/151 (1%)
Query: 864 ESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
+ K+ L +G N+ + H + K N+ + + T GIEAA II E++ +
Sbjct: 1220 KEKYKLLVEGDNLRAV-MATHGVKGTKTSSNNTYEVEKTLGIEAARTTIINEIQYTMVNH 1278
Query: 924 GIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGRED 982
G+ +D RH+ L++D MT+ G + + R G+ ++ S + +FE + + A+ G++D
Sbjct: 1279 GMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKD 1338
Query: 983 SLRAPSARVMLGQECRQGTGLFQLRNREKKK 1013
S+ S +++G GTGLF+L ++ K+
Sbjct: 1339 SVCGVSECIIMGIPMNIGTGLFKLLHKADKE 1369
>gi|224052370|ref|XP_002195476.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 isoform 1
[Taeniopygia guttata]
Length = 1390
Score = 287 bits (734), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 208/621 (33%), Positives = 305/621 (49%), Gaps = 57/621 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF RA+ ++ L
Sbjct: 516 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 575
Query: 73 NTEI--RTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ +I R PP I KP+ LWTGKQV S + L P D ++ G KQ+
Sbjct: 576 DEKIKVRLPPPAILKPVTLWTGKQVFSLI---LKPSDDCPVKANLRTKG----KQYCGKG 628
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L + D++VTI++ EL+SG +DK GS ++ + + + G A +S LA+L
Sbjct: 629 EDLCYN--DSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQVEAADAMSRLARL 686
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
VYL GF++G+ D+ Q + + +++N + C+ L+T Q
Sbjct: 687 APVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYK-----KCDEYIEALNTG----KLQ 737
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
Q + A I ++ L + ++ CL E +N+ M G+KGS
Sbjct: 738 QQPGCTAEETLEALILKE----LSVIRDHAGSACLRE----LDKSNSPLIMALCGSKGSF 789
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ +GQ + G R R+LP F + P A GFV F +G+ P EFFF
Sbjct: 790 INISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFF 849
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H MAGREGL+DTAVKT+ +GY+QR LVK LE L YD+TVR S +IQ +YG DGLD
Sbjct: 850 HTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDP 909
Query: 430 TKRQYLTDK-QFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPH 488
+ + +F + DNI+ + + L K L+LT +S K N
Sbjct: 910 AAMEGKDEPLEFKRVLDNIRAVYPCRSEPALSKNE-------LVLTSESIMKKN------ 956
Query: 489 RTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK 548
++ D ++ +K K + + T +G + V Y
Sbjct: 957 ----------EFLCCQDSFLQEIKKFIKGVSEKIKKTRD---KYGINDNGTTEPRVLYQL 1003
Query: 549 GRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
R + ++KF + K + + PG VG L AQSIGEP TQMTL TFHFAG MN+
Sbjct: 1004 DRITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNI 1063
Query: 609 TLGIPRLREILMMATKAIKTP 629
TLG+PR++EI+ A+KAI TP
Sbjct: 1064 TLGVPRIKEII-NASKAISTP 1083
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 81/151 (53%), Gaps = 2/151 (1%)
Query: 864 ESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
+ K+ L +G N+ + H + K N+ + + T GIEAA II E++ +
Sbjct: 1220 KEKYKLLVEGDNLRAV-MATHGVKGTKTSSNNTYEVEKTLGIEAARTTIINEIQYTMVNH 1278
Query: 924 GIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGRED 982
G+ +D RH+ L++D MT+ G + + R G+ ++ S + +FE + + A+ G++D
Sbjct: 1279 GMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKD 1338
Query: 983 SLRAPSARVMLGQECRQGTGLFQLRNREKKK 1013
S+ S +++G GTGLF+L +R K+
Sbjct: 1339 SVCGVSECIIMGIPMNIGTGLFKLLHRADKE 1369
>gi|124486963|ref|NP_001074716.1| DNA-directed RNA polymerase III subunit RPC1 [Mus musculus]
gi|187956633|gb|AAI51169.1| Polymerase (RNA) III (DNA directed) polypeptide A [Mus musculus]
gi|187956659|gb|AAI51170.1| Polymerase (RNA) III (DNA directed) polypeptide A [Mus musculus]
gi|223462631|gb|AAI51003.1| Polymerase (RNA) III (DNA directed) polypeptide A [Mus musculus]
Length = 1390
Score = 287 bits (734), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 210/621 (33%), Positives = 304/621 (48%), Gaps = 57/621 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF RA+ ++ L
Sbjct: 516 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 575
Query: 73 NTEI--RTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ +I R PPTI KP+ LWTGKQ+ S + L P D +R G KQ+
Sbjct: 576 DEKIKVRLPPPTILKPVTLWTGKQIFSVI---LRPSDDNPVRANLRTKG----KQYCGKG 628
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L V D++VTI++ EL+ G +DK GS ++ + + + G A +S LA+L
Sbjct: 629 EDL--CVNDSYVTIQNSELMCGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARL 686
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
VYL GF++G+ D+ Q + + +++N + C+ L+T Q
Sbjct: 687 APVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYK-----KCDEYIEALNTG----KLQ 737
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
Q + A I ++ L + ++ CL E +N+ M G+KGS
Sbjct: 738 QQPGCTAEETLEALILKE----LSVIRDHAGSACLRE----LDKSNSPLTMALCGSKGSF 789
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ +GQ + G R R+LP F + P A GFV F +G+ P EFFF
Sbjct: 790 INISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFF 849
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H MAGREGL+DTAVKT+ +GY+QR LVK LE L YD+TVR S +IQ +YG DGLD
Sbjct: 850 HTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDP 909
Query: 430 TKRQYLTDK-QFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPH 488
+ + +F + DNIK + + L K L LT ++ K N F
Sbjct: 910 AAMEGKDEPLEFKRVLDNIKAVYPCQTEPALSKND-------LTLTAEAIMKKNE-FLCC 961
Query: 489 RTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK 548
+ F ++ + +K +K K +G + V Y
Sbjct: 962 QDSFLQEIKTFIKGVSEKIKKTRDK------------------YGINDNGTTEPRVLYQL 1003
Query: 549 GRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
R + ++KF + K + + PG VG L AQSIGEP TQMTL TFHFAG MN+
Sbjct: 1004 DRITPTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNI 1063
Query: 609 TLGIPRLREILMMATKAIKTP 629
TLG+PR++EI+ A+KAI TP
Sbjct: 1064 TLGVPRIKEII-NASKAISTP 1083
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 69/123 (56%), Gaps = 1/123 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N+ + + T GIEAA II E++ +G+ +D RH+ L++D MT+ G + + R G+
Sbjct: 1249 NNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGL 1308
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNREKK 1012
++ S + +FE + + A+ G++DS+ S +++G GTGLF+L ++ +
Sbjct: 1309 AKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKANR 1368
Query: 1013 KKK 1015
K
Sbjct: 1369 DPK 1371
>gi|340379445|ref|XP_003388237.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
[Amphimedon queenslandica]
Length = 1402
Score = 286 bits (732), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 227/671 (33%), Positives = 312/671 (46%), Gaps = 95/671 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCI- 71
KAEA LM V S + P++G PL IQD + + L+ +D F RA++ +V L
Sbjct: 514 KAEALVLMGVKSNLVTPRNGEPLIAAIQDFISASFLLTQKDVFFDRAQFFQIVSAMLSNH 573
Query: 72 -LNTEIRTLPPTIWKPMPLWTGKQVLST---------VIINLTPKDKVIIRHGELLSGIL 121
N +I PP I KP+ LWTGKQV+S VIINL K K + ++ S
Sbjct: 574 DSNIKIDIPPPAIIKPVKLWTGKQVMSVLISPNKKSNVIINLRAKGKQYTKGEDMCSN-- 631
Query: 122 DKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAI 180
D+ V I + L G LDK GS ++ + + +G + A
Sbjct: 632 -----------------DSFVVIHNSSHLCGSLDKATLGSGSKNSIFFVLLRDYGEQEAA 674
Query: 181 SLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLD 240
+S LA+L YL GF++G+ D+ + ++N +L E N
Sbjct: 675 DCMSRLARLTPYYLSNRGFSIGIGDVTPGR-------GLVNAKNKLVEEGYANC------ 721
Query: 241 TDPEIISSQLQEAYASIPQFRAQIDRQYKSL--LDKVTNNINQVCLPEGLIEPFPANNLQ 298
+ I S L + + P A + K + L K+ + +VC E P N
Sbjct: 722 --DQFIQSFLDKKLQTQPGCTADETLEAKIVHELSKIREDSGKVCK----TELHPTNTPL 775
Query: 299 FMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRF 358
M G+KGS +N Q+ +GQ + GKR RTLP F +P A GFV F
Sbjct: 776 NMALCGSKGSFINISQMIACVGQQAISGKRTPDGFEDRTLPHFPRNSKAPAAKGFVKNSF 835
Query: 359 MTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLI 418
TG+ P EFFFH M GREGL+DTAVKT+ +GY+QR LVK LE L HYD TVRDSD ++
Sbjct: 836 YTGLVPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCCHYDNTVRDSDGHIV 895
Query: 419 QVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSS 478
Q +YG DGLD + DK F ++L +S A + F
Sbjct: 896 QFIYGGDGLDPAAMEG-KDKPVDF--------------THVLHHVTVSYA----MKFPCK 936
Query: 479 GKPNFIFSPHRTKFTMDLLEQW--YQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSIS 536
+P SP + D + + L + K K F A IS Q F +I+
Sbjct: 937 SEP--ALSPLGFQKLFDQFCDYKRFHLCNDTFKTELKDFLA---KKISKLQGLWSFFNIT 991
Query: 537 ENLAD----------SVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSI 586
+ ++ S V Y GR ++ F D K L S PG VG + AQSI
Sbjct: 992 DTTSENSDNSDITYISPVLYQLGRITSTQFWTFVDTCIDKFLKSRIEPGSAVGAICAQSI 1051
Query: 587 GEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP----SMEIPFLPDMPKL 642
GEP TQMTL TFHFAG MN+TLG+PR++EI+ A K I TP S+ I P+ +L
Sbjct: 1052 GEPGTQMTLKTFHFAGVASMNITLGVPRIKEII-NAAKTISTPIISTSLVIEDDPEAARL 1110
Query: 643 EKKANRLAKSM 653
K R+ K++
Sbjct: 1111 VK--GRIEKTL 1119
Score = 70.1 bits (170), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 75/144 (52%), Gaps = 2/144 (1%)
Query: 864 ESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
++K+ L +G+N+ + H + N N + T GIEAA + I+ E+ +
Sbjct: 1231 KTKYKLLVEGLNLRAV-MATHGVKGNSTTSNHTIEVEKTLGIEAARQTIMNEIAYTMVNH 1289
Query: 924 GIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGRED 982
G+ +D RH+ L+AD MT G + + R G+ ++ S + +FE + + A+ G+ D
Sbjct: 1290 GMNIDARHIMLLADLMTFKGEVLGITRFGLAKMKESVLMLASFEKTSDHLFDAAFHGQSD 1349
Query: 983 SLRAPSARVMLGQECRQGTGLFQL 1006
+ S +++G+ GTG+FQL
Sbjct: 1350 VVNGVSDCIIMGRPMSLGTGMFQL 1373
>gi|337263094|gb|AEI69258.1| RNA polymerase I largest subunit [Encephalitozoon romaleae]
gi|396081289|gb|AFN82907.1| DNA-directed RNA polymerase subunit alpha [Encephalitozoon romaleae
SJ-2008]
Length = 1396
Score = 286 bits (732), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 163/433 (37%), Positives = 240/433 (55%), Gaps = 39/433 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA ++ YL P DG+P+ GL QDH+I L+++ +F + +Y LV L
Sbjct: 507 EAEARHIVMNDFNYLAPTDGNPIRGLTQDHIIVATILTMKGSFFSEEDYFTLVNSGLN-- 564
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
I P I KP+ L++GKQV+ST+I NL V I +
Sbjct: 565 GKRIVLDKPCILKPIRLYSGKQVISTIIKNLGLAVNVEI------------------ETK 606
Query: 133 LVHAVWDTH-----VTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
+ W H + I G++++GILDK G T L HA + G + LL+ +
Sbjct: 607 IPADTWKEHSEESTLRINEGDIITGILDKNSLGPTFKSLAHACGEVKGFAASNDLLTYVG 666
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIIS 247
++ +LQ GFT+G+ D+++ ++ D KR +I+ + A N ++ +P+
Sbjct: 667 RVSNRFLQMYGFTVGIDDLILDRKADIKRKMVIDAEDK----EARNLQKKYVEANPDFYL 722
Query: 248 SQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKG 307
++AY +D ++ ++KVT +I +P GL + FP N ++ ++ GAKG
Sbjct: 723 YDDKKAY---------LDSVMRAEMNKVTTSIVDASVPSGLKKSFPNNGMELIITVGAKG 773
Query: 308 STVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEF 367
S VN QIS LGQ ELEGKR +M+SG+TLP F + P +GG++ F+ GI ++
Sbjct: 774 SIVNLSQISGALGQQELEGKRVPIMISGKTLPCFKSLDFGPSSGGYIYQGFLNGIDLPQY 833
Query: 368 FFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL 427
FFHCMAGREGLIDTAVKT+ SGYLQRCLVKH+E + V YDM+ R ++Q +YGEDGL
Sbjct: 834 FFHCMAGREGLIDTAVKTANSGYLQRCLVKHMEEVKVEYDMSARMGS-KVVQFIYGEDGL 892
Query: 428 DVTKRQYLTDKQF 440
D TK YL D +F
Sbjct: 893 DCTKSSYLDDIEF 905
Score = 197 bits (500), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 143/449 (31%), Positives = 244/449 (54%), Gaps = 27/449 (6%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
+ SLA+PGE+VG++AAQS+GEPSTQMTLNTFH AG G NVTLG+PRLREIL++A+++IK
Sbjct: 955 VCSLADPGESVGIIAAQSVGEPSTQMTLNTFHLAGVGAKNVTLGVPRLREILLVASRSIK 1014
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCF 687
TP + +P ++ +A + ++T+ D ++K + E + + + ++K F
Sbjct: 1015 TPLIVVPIKRNV------GFDIAGCLKKVTLKDCVKKFGVAEEI-VMIDGVFQKKVKIVF 1067
Query: 688 IPAHMYRDKTSVKPSKIIDHFERKFLKEL-----EVAIAKRAAQGLKNMNIEQSRDQMED 742
++ + D S +K K ++ L ++ +++ +GL ++ E ++ ED
Sbjct: 1068 ELSN-FVDLASEALNKKFLKLFGKKMRGLCKAKYKLGVSEVGKKGLPEVD-ENKENESED 1125
Query: 743 DVEDDEGEGAEGAGAALGRVDVSSDE--ERDEEDAVQSHKKVNQEED--NDFEEPEDEER 798
E D + + L V+V+S+E E+D +D ++ +++E++ ++ P +EE
Sbjct: 1126 QNESDSDKESITKSDDLC-VEVTSNESNEKDSDDNTTAYPDIDREDEQMDEPSNPSEEEI 1184
Query: 799 MSEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFL-PS 857
M+ + N + + + + ++ ++ IV + +K + +LF+ S
Sbjct: 1185 MNFTKNSRNVLSFEMLYPTGLNEVISSAIESILPTI-IVREIKGVEKASVSGDMLFVESS 1243
Query: 858 NLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVK 917
++F ++ + + G+ + +S LD+ K NDI+ + ST GIEAA II E+
Sbjct: 1244 SIFS--LTRRIETSPGVYEDLMS----FLDIYKAESNDIYNVYSTLGIEAARYAIINEIV 1297
Query: 918 NVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASM 977
VF VYGI +D RHL LVADYMT G+Y +R+G S IQ+M+FE + + A+
Sbjct: 1298 KVFDVYGITIDSRHLLLVADYMTRKGSYSPFSRHGFGDEDSLIQRMSFESCYSRFKVAAA 1357
Query: 978 QGREDSLRAPSARVMLGQECRQGTGLFQL 1006
ED L PSA + +G GT F L
Sbjct: 1358 FHLEDRLSNPSASITVGNPVGCGTSCFDL 1386
>gi|109503668|ref|XP_001056048.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Rattus
norvegicus]
gi|392353748|ref|XP_341389.5| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Rattus
norvegicus]
Length = 1390
Score = 285 bits (729), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 208/621 (33%), Positives = 302/621 (48%), Gaps = 57/621 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF RA+ ++ L
Sbjct: 516 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 575
Query: 73 NTEI--RTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ +I R PPTI KP+ LWTGKQ+ S + L P D +R G KQ+
Sbjct: 576 DEKIKVRLPPPTILKPVTLWTGKQIFSVI---LRPSDDNPVRANLRTKG----KQYCGKG 628
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L D++VTI++ EL+ G +DK GS ++ + + + G A +S LA+L
Sbjct: 629 EDL--CTNDSYVTIQNSELMCGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARL 686
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
VYL GF++G+ D+ Q + + +++N + C+ L+T Q
Sbjct: 687 APVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYK-----KCDEYIEALNTG----KLQ 737
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
Q + A I ++ L + ++ CL E +N+ M G+KGS
Sbjct: 738 QQPGCTAEETLEALILKE----LSVIRDHAGSACLRE----LDKSNSPLTMALCGSKGSF 789
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ +GQ + G R R+LP F + P A GFV F +G+ P EFFF
Sbjct: 790 INISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFF 849
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H MAGREGL+DTAVKT+ +GY+QR LVK LE L YD+TVR S +IQ +YG DGLD
Sbjct: 850 HTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDP 909
Query: 430 TKRQYLTDK-QFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPH 488
+ + +F + DNIK + + + LS L L T K F+
Sbjct: 910 AAMEGKDEPLEFKRVLDNIKAVYPCQ------SERALSKNELTLTTEAIMKKNEFLCC-- 961
Query: 489 RTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK 548
+ F ++ + +K +K K +G + V Y
Sbjct: 962 QDSFLQEIKTFIKGVSEKIKKTRDK------------------YGINDNGTTEPRVLYQL 1003
Query: 549 GRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
R + ++KF + K + + PG VG L AQSIGEP TQMTL TFHFAG MN+
Sbjct: 1004 DRITRTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNI 1063
Query: 609 TLGIPRLREILMMATKAIKTP 629
TLG+PR++EI+ A+KAI TP
Sbjct: 1064 TLGVPRIKEII-NASKAISTP 1083
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 69/123 (56%), Gaps = 1/123 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N+ + + T GIEAA II E++ +G+ +D RH+ L++D MT+ G + + R G+
Sbjct: 1249 NNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGL 1308
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNREKK 1012
++ S + +FE + + A+ G++DS+ S +++G GTGLF+L ++ +
Sbjct: 1309 AKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKANR 1368
Query: 1013 KKK 1015
K
Sbjct: 1369 DPK 1371
>gi|78190765|gb|ABB29704.1| RNA polymerase I large subunit [Aphrocallistes vastus]
Length = 364
Score = 283 bits (724), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 160/366 (43%), Positives = 221/366 (60%), Gaps = 23/366 (6%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
++EA L+ QYL PKDG+P+SGLIQDHVI G L++R L Y LVY AL
Sbjct: 12 RSEAINLVGTQHQYLSPKDGAPISGLIQDHVIGGVLLTIRGRMLDVHTYFQLVYAALPTF 71
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR-HGELLSGILDKKQFGSTQY 131
R +PP + KP LW+GKQV+STV+ N+ P +K ++ HG K + G +
Sbjct: 72 KHRFRVVPPCMLKPKKLWSGKQVISTVLKNIIPPEKQLVSMHG--------KAKTGGILW 123
Query: 132 GLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFT 191
+ + + V R GELL G+LDK QFGSTQ+GLVHA + +G+ A LLS LA+LFT
Sbjct: 124 TELPYMSENEVIFRDGELLCGVLDKSQFGSTQFGLVHACHELYGSSIASXLLSALARLFT 183
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQ 251
V+LQ GF++GV DIL+ +E ++ R I+ + G AA N L ++ E + S +
Sbjct: 184 VFLQHHGFSMGVADILLTKEGEKLRNSILKRTEEAGF-AAANEL---FSSESEGVKSVGE 239
Query: 252 EAY-ASIPQFR--------AQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
E+ +F D +K + + N +NQ L + ++ FP N+L MVE
Sbjct: 240 ESLRKKFEEFYHTGGNSAIVHADLVFKKHANIINNELNQK-LNKLHLKGFPENSLHLMVE 298
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
+GAKGS VN +QIS LLGQIELEG RP + +SGR+LP PY++S +AGGFV GRF+TGI
Sbjct: 299 AGAKGSAVNRLQISALLGQIELEGARPPLTISGRSLPCNKPYDISLKAGGFVTGRFLTGI 358
Query: 363 QPQEFF 368
P+E+F
Sbjct: 359 DPREYF 364
>gi|406695191|gb|EKC98503.1| hypothetical protein A1Q2_07185 [Trichosporon asahii var. asahii CBS
8904]
Length = 1052
Score = 283 bits (723), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 154/369 (41%), Positives = 220/369 (59%), Gaps = 15/369 (4%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA + N +QYLVP G+PL GLIQDHV++G + + +F TR EY L+Y AL
Sbjct: 687 RAEAQMIANTDNQYLVPTSGNPLRGLIQDHVVAGVWMCNKSSFFTRDEYYQLIYGALRTE 746
Query: 73 NT-----EIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
N I TLPP I KP P+WTGKQ++ST+++NLTP + + L S + +
Sbjct: 747 NNYSGGGRIITLPPAIIKPRPMWTGKQIMSTILVNLTPANAKGL---NLTSKNKVQNKLW 803
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
+ + +V G L+ G+LDK Q+G++ YGLVH+V + +G A LL+ L+
Sbjct: 804 QRDDSKDENMSEENVIFLDGHLILGVLDKSQYGASAYGLVHSVHELYGPYIANRLLAVLS 863
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTD---PE 244
+L T YLQ GF+ + D+++ +E +R R +I++ A G A +GLP D D PE
Sbjct: 864 RLLTKYLQHTGFSCRMDDLILSEEGERLRKQILDDANEDGMRTALQFVGLPHDGDIHNPE 923
Query: 245 I---ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMV 301
+ + +L+E A +D + + +K T+ IN LP L+ PFP NN+Q M
Sbjct: 924 LQQNLKIRLEEILRD-DNLMAGLDAKMQMAFNKTTSKINNDVLPAHLVRPFPDNNMQMMT 982
Query: 302 ESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTG 361
SGAKGS VN QIS LLGQ LEG+R MVSG+TLP+F ++ RAGG+V RF+TG
Sbjct: 983 ISGAKGSKVNASQISTLLGQQALEGRRVPTMVSGKTLPAFKAFDTQARAGGYVANRFLTG 1042
Query: 362 IQPQEFFFH 370
I+PQE++FH
Sbjct: 1043 IRPQEYYFH 1051
>gi|401887040|gb|EJT51046.1| hypothetical protein A1Q1_07736 [Trichosporon asahii var. asahii CBS
2479]
Length = 1052
Score = 283 bits (723), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 154/369 (41%), Positives = 220/369 (59%), Gaps = 15/369 (4%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA + N +QYLVP G+PL GLIQDHV++G + + +F TR EY L+Y AL
Sbjct: 687 RAEAQMIANTDNQYLVPTSGNPLRGLIQDHVVAGVWMCNKSSFFTRDEYYQLIYGALRTE 746
Query: 73 NT-----EIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
N I TLPP I KP P+WTGKQ++ST+++NLTP + + L S + +
Sbjct: 747 NNYSGGGRIITLPPAIIKPRPMWTGKQIMSTILVNLTPANAKGL---NLTSKNKVQNKLW 803
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
+ + +V G L+ G+LDK Q+G++ YGLVH+V + +G A LL+ L+
Sbjct: 804 QRDDSKDENMSEENVIFLDGHLILGVLDKSQYGASAYGLVHSVHELYGPYIANRLLAVLS 863
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTD---PE 244
+L T YLQ GF+ + D+++ +E +R R +I++ A G A +GLP D D PE
Sbjct: 864 RLLTKYLQHTGFSCRMDDLILSEEGERLRKQILDDANEDGMRTALQFVGLPHDGDIHNPE 923
Query: 245 I---ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMV 301
+ + +L+E A +D + + +K T+ IN LP L+ PFP NN+Q M
Sbjct: 924 LQQNLKIRLEEILRD-DNLMAGLDAKMQMAFNKTTSKINNDVLPAHLVRPFPDNNMQMMT 982
Query: 302 ESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTG 361
SGAKGS VN QIS LLGQ LEG+R MVSG+TLP+F ++ RAGG+V RF+TG
Sbjct: 983 ISGAKGSKVNASQISTLLGQQALEGRRVPTMVSGKTLPAFKAFDTQARAGGYVANRFLTG 1042
Query: 362 IQPQEFFFH 370
I+PQE++FH
Sbjct: 1043 IRPQEYYFH 1051
>gi|327276885|ref|XP_003223197.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like [Anolis
carolinensis]
Length = 1337
Score = 283 bits (723), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 206/621 (33%), Positives = 301/621 (48%), Gaps = 57/621 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF RA+ ++ L
Sbjct: 516 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKTCQIIASILVGK 575
Query: 73 NTEIRT--LPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ +I+ PP I KP+ LWTGKQV + L P ++ G KQ+
Sbjct: 576 DEKIKVHLPPPAILKPVTLWTGKQVFGVI---LKPSKSCPVKANLRTKG----KQYCGKG 628
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L D++VTI + EL+SG +DK GS ++ + + + G A +S LA+L
Sbjct: 629 EDL--CTNDSYVTIHNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQVEAADAMSRLARL 686
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
VYL GF++G+ D+ Q + + +++N + C+ L T Q
Sbjct: 687 APVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYK-----KCDEYIEALKTG----KLQ 737
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
Q + A I ++ L + ++ CL E +N+ M G+KGS
Sbjct: 738 QQPGCTAEETLEALILKE----LSVIRDHAGSACLRE----LDKSNSPLIMALCGSKGSF 789
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ +GQ + G R R+LP F + P A GFV F +G+ P EFFF
Sbjct: 790 INISQMIACVGQQAISGSRVPDGFENRSLPHFQKHSKLPAAKGFVANSFYSGLTPTEFFF 849
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H MAGREGL+DTAVKT+ +GY+QR LVK LE L YD+TVR S +IQ +YG DGLD
Sbjct: 850 HTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDP 909
Query: 430 TKRQYLTDK-QFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPH 488
+ + +F + DNI+ + + L K L+LT +S K N F
Sbjct: 910 AAMEGKDEPLEFKRVLDNIRAVYPSRSEPALSKNE-------LMLTAESIMKKNE-FLCC 961
Query: 489 RTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK 548
+ F ++ + + +K +K K +G + V Y
Sbjct: 962 QDSFLQEIKKFIKNMSEKIKKTRDK------------------YGINDNGTTEPYVLYQL 1003
Query: 549 GRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
R + ++KF + K + + PG VG L AQSIGEP TQMTL TFHFAG MN+
Sbjct: 1004 DRITPTQLEKFLETCREKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNI 1063
Query: 609 TLGIPRLREILMMATKAIKTP 629
TLG+PR++EI+ A+KAI TP
Sbjct: 1064 TLGVPRIKEII-NASKAISTP 1083
Score = 40.8 bits (94), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 30/48 (62%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 941
N+ + + T GIEA+ II E++ +G+ +D RH+ L++D MT+
Sbjct: 1249 NNTYEVEKTLGIEASRTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTY 1296
>gi|25145495|ref|NP_501127.2| Protein RPC-1 [Caenorhabditis elegans]
gi|351059526|emb|CCD66619.1| Protein RPC-1 [Caenorhabditis elegans]
Length = 1400
Score = 282 bits (722), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 210/669 (31%), Positives = 319/669 (47%), Gaps = 64/669 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAE---YMNLVYQAL 69
KAEAS LMNV + + P+ G PL IQD + G L+ +DTFL RAE + + A
Sbjct: 512 KAEASELMNVKNNLITPRSGEPLVAAIQDFITGGYLLTHKDTFLPRAEVYRFAAALIDAS 571
Query: 70 CILNTEIRTLPPTIWKPMPLWTGKQVLSTVI---------INLTPKDKVIIRHGELLSGI 120
T+IR PP I +P+ LWTGKQ++ +I +NLT K+K + EL S
Sbjct: 572 AKKQTKIRIPPPAIRRPVELWTGKQLIELIIRPDKGSDVSLNLTAKNKSYTGNLELCS-- 629
Query: 121 LDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGST-QYGLVHAVWDTHGAEHA 179
D++V IR+ LL+G LDK GS+ + + + + +G + A
Sbjct: 630 -----------------KDSYVIIRNSVLLAGCLDKSLLGSSSKVNIFYMLMRDYGEDAA 672
Query: 180 ISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPL 239
+ + LA++ V+L GF++G+ D+ ++ R++ ++++ ++ L
Sbjct: 673 VDAMWRLARMAPVFLSNRGFSIGIGDVRPSEQLLREKGQLVDNGYSKCSQYIKELEEGKL 732
Query: 240 DTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQF 299
P + E+ I R+ ++ D + QVCL P
Sbjct: 733 KAQPGCTEEETLESI---------ILRELSTIRD----HAGQVCLRNLSKYNAPLT---- 775
Query: 300 MVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFM 359
M G+KGS +N Q+ +GQ + G RP R+LP F + +P A GFV F
Sbjct: 776 MAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTPEAKGFVANSFY 835
Query: 360 TGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQ 419
+G+ P EFFFH M GREGL+DTAVKT+ +GY+QR LVK LE L YD TVR S +I+
Sbjct: 836 SGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYDGTVRSSVGDVIE 895
Query: 420 VLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALL-LLLTFKSS 478
++GEDGLD + F + + + K+ P+ + L +L +
Sbjct: 896 FVFGEDGLDPAMMEAKDGSVVDFTH-----VLEHAKNIQTTKEQPIPVDKLDEVLKAEIQ 950
Query: 479 GKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISEN 538
K F F L E Q + K KK++ C + + I +N
Sbjct: 951 KK----FKGKYVHFADKLSEYITQTEIKKSKKWQNGKAHCGNHETADLKTKESC-KICKN 1005
Query: 539 L-ADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNT 597
L A + + F ++ +YK ++ PG VG +AA SIGEPSTQMTL T
Sbjct: 1006 LEAYKTSLLANSCLTKTQLCSFIELCYYKVARAITEPGTAVGAIAATSIGEPSTQMTLKT 1065
Query: 598 FHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRIT 657
FHFAG MN+T G+PR++EI+ A K I TP + L P E A R+ + + T
Sbjct: 1066 FHFAGVASMNITQGVPRIKEII-NAVKTISTPIITAALLD--PYDESLARRVKARIEKTT 1122
Query: 658 MADVLEKVK 666
+ ++ + ++
Sbjct: 1123 LGEICDYIE 1131
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 68/129 (52%), Gaps = 1/129 (0%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D K N+ +A GIEAA II E+ +GI +D RH+ L+AD MT+ G
Sbjct: 1255 VDPRKTNFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRHVMLLADVMTYRGEV 1314
Query: 946 VAMNRNG-IRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
+ + RNG +++ S + +FE ++ + +A+ + D + S +++G GTG F
Sbjct: 1315 LGITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPMTVGTGTF 1374
Query: 1005 QLRNREKKK 1013
+L + KK
Sbjct: 1375 KLMQKYDKK 1383
>gi|367004166|ref|XP_003686816.1| hypothetical protein TPHA_0H01760 [Tetrapisispora phaffii CBS 4417]
gi|357525118|emb|CCE64382.1| hypothetical protein TPHA_0H01760 [Tetrapisispora phaffii CBS 4417]
Length = 1459
Score = 282 bits (721), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 214/684 (31%), Positives = 330/684 (48%), Gaps = 77/684 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + L PK G P+ QD + +S +D+F RA L+ +
Sbjct: 528 RAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRATLTQLL-SMMSDA 586
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLS---------TVIINLTPKDKVIIRHGELLSGILDK 123
N + PP I+KP LWTGKQ+ S V+INL K+KV I
Sbjct: 587 NLKFDIPPPAIFKPQCLWTGKQIFSLLIKPNKESPVVINLDAKNKVYIPP--------QN 638
Query: 124 KQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFG-STQYGLVHAVWDTHGAEHAISL 182
K + S + D +V IR E+LSG++DK G ++ + + + +G + + +
Sbjct: 639 KSWPSEM-----SPNDGYVIIRGSEILSGVMDKSVLGDGKKHSVFYTILRDYGPQESANA 693
Query: 183 LSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTD 242
++ +AKL YL GF++G+ D+ +E K+ ++ A + E L+T
Sbjct: 694 MNRMAKLCARYLGNRGFSIGISDVTPGEELKLKKEDLVEIAYKKCDELIIQYNKGELETQ 753
Query: 243 PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPE--GLIEPFPANNLQFM 300
P Q EA + LL KV + VC+ E L P M
Sbjct: 754 PGCNEEQTLEA-------------KIGGLLSKVREEVGDVCINELDNLNAPL------IM 794
Query: 301 VESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMT 360
G+KGS +N Q+ ++GQ + G R R+LP F +P++ GFV F T
Sbjct: 795 ATCGSKGSNLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFEKNSKTPQSKGFVRNSFFT 854
Query: 361 GIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQV 420
G+ P EF FH ++GREGL+DTAVKT+ +GY+ R L+K LE L+ YD T+R S ++Q
Sbjct: 855 GLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTIRTSSNGIVQF 914
Query: 421 LYGEDGLDVT-----------KRQYLTDKQFSFLEDNIKWICSYKVI--LNLLKKHPLSL 467
YG DGLD KR + +F + N K + Y++I NL+ + PL
Sbjct: 915 TYGGDGLDPLDMEGNAKPVNFKRTWDHASNITF-DFNAKGLLPYQIIKQTNLILQ-PLEN 972
Query: 468 ALLLLLTFKSSGKPNFIFSPHRTKFT--MDLLEQWYQ-----LDDKARKKYRKKFKACPQ 520
A L+ + + GKP H+ ++ +D +Y + +KA + + + +
Sbjct: 973 A---LVRYNNVGKPLSKKDYHKDEYVDQLDAKRDFYASIREYMVEKAEQLAKIRKARSLK 1029
Query: 521 PLISTFQPDAHFGSISENLADSVVKYTK--GRTDASHVDKFYDMIFYKNLLSLANPGENV 578
LIS + EN+ +V + + ++V KF ++ K + PG V
Sbjct: 1030 ELISEPAEELQHIDFDENIPSNVREVVDKLCKISEANVKKFLEIAISKYHRAKVEPGTAV 1089
Query: 579 GVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPD 638
G + AQSIGEP TQMTL TFHFAG MNVTLG+PR++EI+ A+K I TP ++ + D
Sbjct: 1090 GAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII-NASKTISTPIIKAVLVND 1148
Query: 639 MPKLEKKANRLAKS-MTRITMADV 661
+++A R+ K + + ++DV
Sbjct: 1149 S---DRRAARVVKGRIEKTLLSDV 1169
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 1/118 (0%)
Query: 890 KLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMN 949
K N I + + GIEAA I+ E+ + +G+ VDPRH+ L+ D MT G + +
Sbjct: 1311 KTSTNHILEIFNVLGIEAARSSIVGEIDYTMSNHGMSVDPRHIQLLGDVMTFKGEVLGIT 1370
Query: 950 RNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
R G+ ++ S +Q +FE + + A+ ++D ++ S ++LGQ GTG F +
Sbjct: 1371 RFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDEVKGVSECIILGQTMSIGTGSFNV 1428
>gi|351708991|gb|EHB11910.1| DNA-directed RNA polymerase III subunit RPC1 [Heterocephalus glaber]
Length = 1392
Score = 281 bits (720), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 207/623 (33%), Positives = 309/623 (49%), Gaps = 61/623 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF RA+ ++ L
Sbjct: 518 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 577
Query: 73 NTEIRT-LP-PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ ++R LP P I KP+ LWTGKQ+ S + L P D +R G KQ+
Sbjct: 578 DEKVRVRLPHPAILKPVTLWTGKQIFSVI---LRPSDDNPVRANLRTKG----KQYCGKG 630
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L V D++VTI++ EL+ G +DK GS ++ + + + G A +S LA+L
Sbjct: 631 EDL--CVNDSYVTIQNSELMCGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARL 688
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
VYL GF++G+ D+ Q + + +++N + C+ L+T Q
Sbjct: 689 APVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYK-----KCDEYIEALNTG----KLQ 739
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
Q + A I ++ L + ++ CL E +N+ M G+KGS
Sbjct: 740 QQPGCTAEETLEALILKE----LSVIRDHAGSACLRE----LDKSNSPLTMALCGSKGSF 791
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ +GQ + G R R+LP F + P A GFV F +G+ P EFFF
Sbjct: 792 INISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFF 851
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H MAGREGL+DTAVKT+ +GY+QR LVK LE L YD+TVR S +IQ +YG DGLD
Sbjct: 852 HTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDP 911
Query: 430 TKRQYLTDK-QFSFLEDNIKWI--CSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFS 486
+ + +F + DNI+ + C + L+ K+ L+L+ ++ K F+
Sbjct: 912 AAMEGKDEPLEFKRVLDNIRAVYPCPSEPALS---KNDLALSSEAIMK-----KSEFLCC 963
Query: 487 PHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKY 546
+ F ++ + + +K +K K +G + V Y
Sbjct: 964 --QDSFLQEIKKFIKGVSEKIKKTRDK------------------YGINDNGTTEPRVLY 1003
Query: 547 TKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDM 606
R + ++KF + K + + PG VG L AQSIGEP TQMTL TFHFAG M
Sbjct: 1004 QLDRITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASM 1063
Query: 607 NVTLGIPRLREILMMATKAIKTP 629
N+TLG+PR++EI+ A+KAI TP
Sbjct: 1064 NITLGVPRIKEII-NASKAISTP 1085
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 68/120 (56%), Gaps = 1/120 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N+ + + T GIEAA II E++ +G+ +D RH+ L++D MT+ G + + R G+
Sbjct: 1251 NNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGL 1310
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNREKK 1012
++ S + +FE + + A+ G++DS+ S +++G GTGLF+L ++ +
Sbjct: 1311 AKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKANR 1370
>gi|348576170|ref|XP_003473860.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like [Cavia
porcellus]
Length = 1390
Score = 280 bits (717), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 206/623 (33%), Positives = 309/623 (49%), Gaps = 61/623 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF RA+ ++ L
Sbjct: 516 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 575
Query: 73 NTEIRT-LP-PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ +++ LP P I KP+ LWTGKQ+ S + L P D +R G KQ+
Sbjct: 576 DEKVKVRLPHPAILKPVTLWTGKQIFSVI---LRPSDDNPVRANLRTKG----KQYCGKG 628
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L V D++VTI++ EL+ G +DK GS ++ + + + G A +S LA+L
Sbjct: 629 EDL--CVNDSYVTIQNSELMCGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARL 686
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
VYL GF++G+ D+ Q + + +++N + C+ L+T Q
Sbjct: 687 APVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYK-----KCDEYIEALNTG----RLQ 737
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
Q + A I ++ L + ++ CL E +N+ M G+KGS
Sbjct: 738 QQPGCTAEETLEALILKE----LSVIRDHAGSACLRE----LDKSNSPLTMALCGSKGSF 789
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ +GQ + G R R+LP F + P A GFV F +G+ P EFFF
Sbjct: 790 INISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFF 849
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H MAGREGL+DTAVKT+ +GY+QR LVK LE L YD+TVR S +IQ +YG DGLD
Sbjct: 850 HTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDP 909
Query: 430 TKRQYLTDK-QFSFLEDNIKWI--CSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFS 486
+ + +F + DNI+ + C + L+ K+ L+L+ ++ K F+
Sbjct: 910 AAMEGKDEPLEFKRVLDNIRAVYPCPSEPALS---KNELALSTEAIMK-----KNEFLCC 961
Query: 487 PHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKY 546
+ F ++ + + +K +K K +G + V Y
Sbjct: 962 --QDSFLQEIKKFIKGVSEKIKKTRDK------------------YGINDNGTTEPRVLY 1001
Query: 547 TKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDM 606
R + ++KF + K + + PG VG L AQSIGEP TQMTL TFHFAG M
Sbjct: 1002 QLDRITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASM 1061
Query: 607 NVTLGIPRLREILMMATKAIKTP 629
N+TLG+PR++EI+ A+KAI TP
Sbjct: 1062 NITLGVPRIKEII-NASKAISTP 1083
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 68/120 (56%), Gaps = 1/120 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N+ + + T GIEAA II E++ +G+ +D RH+ L++D MT+ G + + R G+
Sbjct: 1249 NNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGL 1308
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNREKK 1012
++ S + +FE + + A+ G++DS+ S +++G GTGLF+L ++ +
Sbjct: 1309 AKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKANR 1368
>gi|308491392|ref|XP_003107887.1| hypothetical protein CRE_12654 [Caenorhabditis remanei]
gi|308249834|gb|EFO93786.1| hypothetical protein CRE_12654 [Caenorhabditis remanei]
Length = 1406
Score = 280 bits (716), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 211/679 (31%), Positives = 320/679 (47%), Gaps = 85/679 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAE---YMNLVYQAL 69
KAEAS LMNV + + P+ G PL IQD + G L+ +DTFL RAE + + A
Sbjct: 517 KAEASELMNVKNNLITPRSGEPLVAAIQDFITGGYLLTHKDTFLPRAEVYRFAAALIDAS 576
Query: 70 CILNTEIRTLPPTIWKPMPLWTGKQVLSTVI---------INLTPKDKVIIRHGELLSGI 120
T+IR PP I KP+ LWTGKQ++ +I +NLT K+K + EL S
Sbjct: 577 AKKQTKIRIPPPAIRKPVELWTGKQLIELIIRPDKGSQISLNLTAKNKSYSGNLELCS-- 634
Query: 121 LDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGST-QYGLVHAVWDTHGAEHA 179
D++V IR+ LL+G+LDK GS+ + + + + +G + A
Sbjct: 635 -----------------KDSYVIIRNSVLLAGVLDKSLLGSSSKVNIFYMLMRDYGEDAA 677
Query: 180 ISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPL 239
+ + LA++ V+L GF++G+ D+ + +++ ++++ + L
Sbjct: 678 VDAMWRLARMAPVFLSNRGFSIGIGDVRPSERLLQEKGQLVDTGYEQCAQYIRELEEGKL 737
Query: 240 DTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQF 299
P + EA I R+ ++ D + QVCL P
Sbjct: 738 KAQPGCTEEETLEAI---------ILRELSTIRD----HAGQVCLRNLSKYNAPLT---- 780
Query: 300 MVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFM 359
M G+KGS +N Q+ +GQ + G RP R+LP F + +P A GFV F
Sbjct: 781 MAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTPEAKGFVANSFY 840
Query: 360 TGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQ 419
+G+ P EFFFH M GREGL+DTAVKT+ +GY+QR LVK LE L YD TVR S +I+
Sbjct: 841 SGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYDGTVRSSVGDVIE 900
Query: 420 VLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSG 479
++GEDGLD + F + + + K+ P+ A L K+
Sbjct: 901 FVFGEDGLDPAMMEAKDGSVVDFTH-----VLEHAKNIQTKKETPIP-ADKLEDVLKNEV 954
Query: 480 KPNFIFS-PHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISEN 538
+ F PH + L+ + Q + + KK++ C Q + EN
Sbjct: 955 QKQFKGKYPHFA----EQLKDFLQTEIRKSKKWQNGKTHCSQ-----------HETAEEN 999
Query: 539 LADSVVK-----------YTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIG 587
+ + K T + + F + +YK ++ PG VG +AA SIG
Sbjct: 1000 IREKCAKCKNMAEYKSLLLTNSCLTKAQLHSFIQLCYYKVARAITEPGTAVGAIAATSIG 1059
Query: 588 EPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKAN 647
EPSTQMTL TFHFAG MN+T G+PR++EI+ A K I TP + L P E A
Sbjct: 1060 EPSTQMTLKTFHFAGVASMNITQGVPRIKEII-NAVKTISTPIITAALLD--PYDESLAR 1116
Query: 648 RLAKSMTRITMADVLEKVK 666
R+ + + T+ ++ + ++
Sbjct: 1117 RVKARIEKTTLGEICDYIE 1135
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 69/129 (53%), Gaps = 1/129 (0%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D K N+ +A GIEAA II E+ +GI +D RH+ L+AD MT+ G
Sbjct: 1259 VDPRKTNFNNALVVAEVLGIEAARTCIINEIIATMDAHGIGLDRRHVMLLADVMTYRGEV 1318
Query: 946 VAMNRNG-IRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
+ + RNG +++ S + +FE ++ + +A+ + D + S +++G GTG F
Sbjct: 1319 LGITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPMTVGTGTF 1378
Query: 1005 QLRNREKKK 1013
+L + +KK
Sbjct: 1379 KLMQKHEKK 1387
>gi|260946503|ref|XP_002617549.1| DNA-directed RNA polymerase III largest subunit [Clavispora
lusitaniae ATCC 42720]
gi|238849403|gb|EEQ38867.1| DNA-directed RNA polymerase III largest subunit [Clavispora
lusitaniae ATCC 42720]
Length = 1491
Score = 280 bits (715), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 211/697 (30%), Positives = 328/697 (47%), Gaps = 115/697 (16%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + L PK G P+ QD + +S +D+F RA + L LC++
Sbjct: 560 RAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRASLVQL----LCMM 615
Query: 73 ---NTEIRTLPPTIWKPMPLWTGKQVLS---------TVIINLTPKDKVIIRHGELLSGI 120
+ + PPT++KP+ LWTGKQV S V+IN+ K+K I + L
Sbjct: 616 SDADMQFDIPPPTVFKPVMLWTGKQVFSMLIRPNKKSNVVINVDAKNKTFIPPPKHLPNE 675
Query: 121 LDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFG-STQYGLVHAVWDTHGAEHA 179
+ D V IR ++LSG++DK G ++ + + + +G + A
Sbjct: 676 MSPN--------------DGFVVIRGSQILSGVMDKSTLGDGKKHSVFYTILRDYGPDEA 721
Query: 180 ISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNAL---- 235
++ +AKL YL GF++G+ D+ + K+ +++ A A C+ L
Sbjct: 722 AKAMNRMAKLCARYLGNRGFSIGINDVTPGADLKAKKERMVEAAY-----AKCDELIDLY 776
Query: 236 -GLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPE--GLIEPF 292
L+T P Q EA + LL KV + +VC+ E L P
Sbjct: 777 TKGKLETQPGCNEEQTLEA-------------KIGGLLSKVREEVGEVCIRELDSLNAPL 823
Query: 293 PANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGG 352
M G+KGST+N Q+ ++GQ + G R R+LP F +P++ G
Sbjct: 824 ------IMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFTKMSKTPQSKG 877
Query: 353 FVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRD 412
FV F +G+ P EF FH ++GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR+
Sbjct: 878 FVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSSYDNTVRN 937
Query: 413 SDLSLIQVLYGEDGLDVTKRQYLTDKQ-FSFLEDNIKWICSYKVILNLLKKHPLSLALLL 471
S ++Q YG DGLD + D Q +F N +W +Y + N + +
Sbjct: 938 SSNGIVQFTYGGDGLDPLDME--GDAQPVNF---NRQWDHAYNITYNQKEAN-------- 984
Query: 472 LLTFKSSGKPNFIFSPHRTKFT----------------MDLLEQ------WYQ-----LD 504
LL F+ N I +P K ++ ++Q +YQ +
Sbjct: 985 LLPFQIMDVVNSILAPLENKLVRYDNLGNLIEGEIGDRIEYIDQKDAERAFYQSIRTYVQ 1044
Query: 505 DKARKKYRKKFKACPQPLISTFQPDAHF----GSISENLADSVVKYTKGRTDASHVDKFY 560
KA + R + + +P ++ + D +S N + ++K ++ + V++F
Sbjct: 1045 KKATQLARLRQQKKLRPFLTKLEDDGDMVLDEDPVSINAINQLMKISQ-----TCVEEFL 1099
Query: 561 DMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILM 620
YK L + PG VG + A SIGEP TQMTL TFHFAG MNVTLG+PR++EI+
Sbjct: 1100 KQCLYKYLRARVEPGTAVGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII- 1158
Query: 621 MATKAIKTPSMEIPFLPDMPKLEKKA--NRLAKSMTR 655
A K I TP + + D ++ + R+ K++ R
Sbjct: 1159 NAAKVISTPIINTVLVNDEDEVAARVVKGRIEKTLLR 1195
Score = 70.1 bits (170), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 74/142 (52%), Gaps = 13/142 (9%)
Query: 866 KHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 925
K ++ TDGI V + H+L++ ++ GIEAA II E+ + +G+
Sbjct: 1334 KDVMSTDGI-VGTKTSTNHVLEVYEVL-----------GIEAARASIIGEIDYTMSKHGM 1381
Query: 926 EVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSL 984
VDPRH+ L+ D MT+ G + + R G+ ++ S +Q +FE + + A+ + D +
Sbjct: 1382 SVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFFMKNDKI 1441
Query: 985 RAPSARVMLGQECRQGTGLFQL 1006
S ++LGQ GTG F+L
Sbjct: 1442 EGVSECIILGQTMSIGTGAFKL 1463
>gi|294659690|ref|XP_462102.2| DEHA2G12980p [Debaryomyces hansenii CBS767]
gi|218511816|sp|Q6BI69.2|RPC1_DEBHA RecName: Full=DNA-directed RNA polymerase III subunit RPC1; Short=RNA
polymerase III subunit C1; AltName: Full=DNA-directed RNA
polymerase III largest subunit
gi|199434160|emb|CAG90588.2| DEHA2G12980p [Debaryomyces hansenii CBS767]
Length = 1457
Score = 280 bits (715), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 207/646 (32%), Positives = 319/646 (49%), Gaps = 68/646 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + L PK G P+ QD + +S +D+F RA + Q LC++
Sbjct: 525 RAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLVSHKDSFFDRASLV----QLLCMM 580
Query: 73 ---NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQ--FG 127
+ + PP I+KP+ LWTGKQV S ++I K V+I LD K +
Sbjct: 581 SDADIQFDIPPPAIFKPVMLWTGKQVFS-LLIKPNKKSNVVIN--------LDAKNKTYT 631
Query: 128 STQYGLVHAVW--DTHVTIRHGELLSGILDKKQFG-STQYGLVHAVWDTHGAEHAISLLS 184
G + + D V IR ++LSG++DK G ++ + + + +G + A + ++
Sbjct: 632 PPAKGFPNEMSPNDGFVIIRGSQILSGVMDKSTLGDGKKHSVFYTILRDYGPDEAANAMN 691
Query: 185 CLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPE 244
+AKL YL GF++G+ D++ + +K+ ++ +A E L+T P
Sbjct: 692 RMAKLCARYLGNRGFSIGINDVIPGSDLKQKKELMVEQAYLKCDELIDLYNRGNLETQPG 751
Query: 245 IISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESG 304
Q EA + LL KV + ++C+ E AN M G
Sbjct: 752 CNEEQTLEA-------------KIGGLLSKVREEVGEICINE----LDSANAPLIMATCG 794
Query: 305 AKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQP 364
+KGST+N Q+ ++GQ + G R R+LP F +P++ GFV F +G+ P
Sbjct: 795 SKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFTKNSKTPQSKGFVRNSFFSGLTP 854
Query: 365 QEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGE 424
EF FH ++GREGL+DTAVKT+ +GY+ R L+K L+ L+ YD TVR+S ++Q YG
Sbjct: 855 PEFLFHSISGREGLVDTAVKTAETGYMSRRLMKSLDDLSAQYDHTVRNSSNGIVQFTYGG 914
Query: 425 DGLDVTK-----------RQYLTDKQFSF-LEDNIKWICSYKVILNLLKK--HPLSLALL 470
DGLD RQ+ +F +ED K + Y++I L+ HPL L+
Sbjct: 915 DGLDPFDMEGDARPVNFVRQWDHAYNITFDIED--KGLLPYQII-ELVDSILHPLEDRLV 971
Query: 471 LLLTFKSSGKPNFIFSPHRTKFT--MDLLEQWYQ-----LDDKARKKYRKKFKACPQPLI 523
+ + GK + + ++ D ++YQ +KA K + K +P +
Sbjct: 972 ---RYDNVGKIIPLEDSDKIEYIDQNDAEREFYQSIREFTTNKATKLAEIREKKMLKPFL 1028
Query: 524 STFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAA 583
+ +P F + E+ V + A+ ++KF + YK + PG VG + A
Sbjct: 1029 T--EPAEDFIRLDESDESLVAINQLSKVSANSINKFLEQCIYKYSRAKVEPGTAVGAIGA 1086
Query: 584 QSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
QSIGEP TQMTL TFHFAG MNVTLG+PR++EI+ A+K I TP
Sbjct: 1087 QSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII-NASKVISTP 1131
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 81/156 (51%), Gaps = 14/156 (8%)
Query: 866 KHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 925
K ++ TDG+ V + H+L++ ++ GIEAA II E+ + +G+
Sbjct: 1300 KEVMSTDGV-VGTKTSTNHILEVFQVL-----------GIEAARASIIGEIDYTMSKHGM 1347
Query: 926 EVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSL 984
VDPRH+ L+ D MT+ G + + R G+ ++ S +Q +FE + + AS + D +
Sbjct: 1348 SVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDASFYMKNDKI 1407
Query: 985 RAPSARVMLGQECRQGTGLFQLRNR-EKKKKKVEAK 1019
S ++LGQ GTG F+L N + KK +E K
Sbjct: 1408 EGVSECIILGQTMNIGTGAFKLVNSFDVDKKALEMK 1443
>gi|255722720|ref|XP_002546294.1| DNA-directed RNA polymerase III largest subunit [Candida tropicalis
MYA-3404]
gi|240130811|gb|EER30373.1| DNA-directed RNA polymerase III largest subunit [Candida tropicalis
MYA-3404]
Length = 1159
Score = 279 bits (714), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 209/659 (31%), Positives = 320/659 (48%), Gaps = 66/659 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + L PK G P+ QD + +S +D+F RA L+ +
Sbjct: 524 RAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRASLSQLL-SMMSDA 582
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQ--FGSTQ 130
N + PP I+KP+ LWTGKQV S ++I + KV+I LD K F
Sbjct: 583 NIQFDIPPPAIFKPVMLWTGKQVFS-LLIKPNKQSKVVIN--------LDAKNKTFHPPA 633
Query: 131 YGLVHAVW--DTHVTIRHGELLSGILDKKQFG-STQYGLVHAVWDTHGAEHAISLLSCLA 187
GL + + D V IR ++LSG++DK G ++ + + + +G + A + ++ +A
Sbjct: 634 KGLPNEMSPNDGFVVIRGSQILSGLMDKSTLGDGKKHSVFYTILRDYGPQEAANAMNRMA 693
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNAL-----GLPLDTD 242
K+ YL GF++G+ D+ E +K+ ++ +A C+ L L+T
Sbjct: 694 KMCARYLGNRGFSIGINDVTPADELKQKKELMVEQAY-----LKCDQLIDLYNRGKLETQ 748
Query: 243 PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPE--GLIEPFPANNLQFM 300
P Q EA + LL KV + +VC+ E L P M
Sbjct: 749 PGCNEEQTLEA-------------KIGGLLSKVREEVGEVCIRELDSLNAPL------IM 789
Query: 301 VESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMT 360
G+KGST+N Q+ ++GQ + G R R+LP F +P++ GFV F +
Sbjct: 790 ATCGSKGSTLNVSQMVAVVGQQIISGHRVPDGFQDRSLPHFTKNSKTPQSKGFVRNSFFS 849
Query: 361 GIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQV 420
G+ P EF FH ++GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR+S ++Q
Sbjct: 850 GLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDNTVRNSSNGIVQF 909
Query: 421 LYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGK 480
YG DGLD Y + + N +W S+ + N+ K L + L+ K S
Sbjct: 910 TYGGDGLD----PYDMEGDARPVNFNRQWDHSFNLTYNVDDKGLLPYQISELVDSKLS-- 963
Query: 481 PNFIFSPHRTKFTMDLLEQWYQLDDK-ARKKYRKKFKACPQPLISTFQPDAHFGSISENL 539
P + T+F + E + D+ R + + KA ++ + N
Sbjct: 964 PLETGNNAETEFYKSIKEFIAKKSDRLGRLREDRGLKA----FVTAGDMEVDEDPAVVNS 1019
Query: 540 ADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFH 599
+ ++K ++ ++KF + YK + PG VG + AQSIGEP TQMTL TFH
Sbjct: 1020 VNQILKISQ-----KTIEKFLEQCLYKYSRAKVEPGTAVGAIGAQSIGEPGTQMTLKTFH 1074
Query: 600 FAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITM 658
FAG MNVTLG+PR++EI+ A+K I TP + + D ++ A R+AK T+
Sbjct: 1075 FAGVASMNVTLGVPRIKEII-NASKVISTPIINSVLVNDEDEI---AARVAKGRIEKTL 1129
>gi|156717272|ref|NP_001096178.1| polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Xenopus
(Silurana) tropicalis]
gi|134025743|gb|AAI35597.1| polr3a protein [Xenopus (Silurana) tropicalis]
Length = 1390
Score = 279 bits (713), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 207/628 (32%), Positives = 303/628 (48%), Gaps = 71/628 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + + L+L+DTF RA+ ++ L
Sbjct: 515 KAEAYVLMGTKANLVTPRNGEPLIAAIQDFLTAAYLLTLKDTFFDRAKACQIIASILVGK 574
Query: 73 NTEI--RTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ +I R PP I KP+ LWTGKQV S + L P +R G KQ+
Sbjct: 575 DEKIKVRLPPPAILKPVTLWTGKQVFSLI---LQPSHDNPVRANLRTKG----KQYCGKG 627
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L H D++VTI++ EL+ G LDK GS ++ + + + G A +S LA+L
Sbjct: 628 EDLCHN--DSYVTIQNSELMCGSLDKGTLGSGSKNNIFYILLRDWGQVEAADAMSRLARL 685
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
V+L GF++G+ D+ Q + + +++ + C+ L+T Q
Sbjct: 686 APVFLSNRGFSIGIGDVTPGQGLLKAKQDLLDAGYK-----KCDEYIEALNTG----KLQ 736
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
Q ++ A I R+ L + ++ CL E +N+ M G+KGS
Sbjct: 737 PQPGCSAEETLEALILRE----LSVIRDHAGSACLRE----LDKSNSPLIMALCGSKGSF 788
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ +GQ + G R R+LP F + P A GFV F +G+ P EFFF
Sbjct: 789 INISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFF 848
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H MAGREGL+DTAVKT+ +GY+QR LVK LE L YD+TVR S +IQ +YG DGLD
Sbjct: 849 HTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDP 908
Query: 430 TKRQYLTDK-QFSFLEDNIKWI--CSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFI-- 484
+ + +F + +N+K + CS ++ LS L+L + K F+
Sbjct: 909 AAMEGKDEPLEFKRVLENVKAVYPCS--------EEPALSKNELILTSESIMKKTEFLCC 960
Query: 485 ---FSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLAD 541
+ KF + E+ + DK +G +
Sbjct: 961 QDSYLQEIKKFVTGVSERIKKTRDK-------------------------YGINDNGTTE 995
Query: 542 SVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFA 601
V Y R + ++KF + K + + PG VG L AQSIGEP TQMTL TFHFA
Sbjct: 996 PRVLYQLDRITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFA 1055
Query: 602 GRGDMNVTLGIPRLREILMMATKAIKTP 629
G MN+TLG+PR++EI+ A+K I TP
Sbjct: 1056 GVASMNITLGVPRIKEII-NASKNISTP 1082
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 68/120 (56%), Gaps = 1/120 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N+ + + T GIEAA II E++ +G+ +D RH+ L+AD MT+ G + + R G+
Sbjct: 1248 NNTYEVEKTLGIEAARSTIINEIQYTMVNHGMSIDRRHVMLLADLMTYKGEVLGITRFGL 1307
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNREKK 1012
++ S + +FE + + A+ G++DS+ S +++G GTGLF+L ++ K
Sbjct: 1308 AKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKADK 1367
>gi|170106087|ref|XP_001884255.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164640601|gb|EDR04865.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 1397
Score = 278 bits (711), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 204/634 (32%), Positives = 307/634 (48%), Gaps = 62/634 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+ EA LMNV + P++G P+ IQD + + LS +D FL R ++ Q C
Sbjct: 507 RTEALELMNVKHNLVTPRNGEPVIAAIQDFITASFLLSRKDQFLDRRQFT----QICCYF 562
Query: 73 ---NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGST 129
+ +I PPTIWKP+ LWTGKQ+ + V+I K +++ + K
Sbjct: 563 ADADMQIDIPPPTIWKPVRLWTGKQIFN-VLIRPNKKSNILVNVESKCHKWEEAKPENYP 621
Query: 130 QYGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAK 188
L + D + I + E++ G++DK GS + + + +G A + ++ LAK
Sbjct: 622 SPDL--SPNDGWLVIVNSEIMCGVMDKATVGSGKKKSIFGVIMRDYGPHEAAAAMNRLAK 679
Query: 189 LFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISS 248
L +L GF+LG+ D++ E R++ ++ KA + A L+ P
Sbjct: 680 LCARWLANYGFSLGINDVIPGPELSRQKDILVEKAYADCQDLIALAKKGKLENKPGCDQE 739
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGS 308
Q EA S S+L KV + Q+C+ E + P M G+KGS
Sbjct: 740 QTLEALIS-------------SVLSKVREAVGQICMKELSRQNAPL----IMATCGSKGS 782
Query: 309 TVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFF 368
+N Q+ +GQ + G R R+LP F P + GFV F +G++ EF
Sbjct: 783 VINVSQMVACVGQQIIAGHRVPNGFQDRSLPHFPKKSKEPPSKGFVRNSFYSGLRATEFL 842
Query: 369 FHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
FH ++GREGL+DTAVKT+ +GY+QR L+K LE LT YD++VR+S ++Q YG+DGLD
Sbjct: 843 FHAISGREGLVDTAVKTAETGYMQRRLMKALEDLTTQYDLSVRNSTGGVVQFRYGDDGLD 902
Query: 429 VTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLL---LLTFKSSGKPNFIF 485
+ LE + + + L+ H L++ L F+ S +
Sbjct: 903 P-----------ACLEGD-----AQPIDLDRSWNHSLAIGGRSGRGFLPFEISELVDREL 946
Query: 486 SPHR-----TKFTMDLLEQWYQLDDKARK-----KYRKKFKACPQPLISTFQPDAHFGSI 535
HR T +DL+ + + D A+K K R F+A + + D G+
Sbjct: 947 GTHRFISECTAAYLDLI-KGFVADHIAQKVANVRKSRGMFEALEREAEWDAETDLSLGAS 1005
Query: 536 SENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTL 595
AD + K + S + KF D+ + K + + PG VG + AQSIGEP TQMTL
Sbjct: 1006 D---ADKAIVDNKSKVTESQLRKFLDLCWVKYVKARIEPGSTVGAVGAQSIGEPGTQMTL 1062
Query: 596 NTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
TFHFAG MNVTLG+PR++EI+ A KAI TP
Sbjct: 1063 KTFHFAGVASMNVTLGVPRIKEII-NAAKAISTP 1095
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N + +A GIEAA + II E++ + + +DPRH+ L+ D M++ G + + R G+
Sbjct: 1264 NHVIEVAQVLGIEAARQTIINEIQYTMKSHDMIIDPRHVMLLGDVMSYKGEVLGITRFGV 1323
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLG 994
++ S + +FE + + AS G+ DS+ S +++G
Sbjct: 1324 GKMKDSVLMLASFEKTTDHLFDASAFGKNDSIAGVSESIIMG 1365
>gi|426365245|ref|XP_004049691.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Gorilla
gorilla gorilla]
Length = 1334
Score = 278 bits (711), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 206/618 (33%), Positives = 303/618 (49%), Gaps = 58/618 (9%)
Query: 17 SFLMNVSSQYLV-PKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCILNTE 75
S + +++ LV P++G PL IQD + L+L+DTF RA+ ++ L + +
Sbjct: 463 SIMAHLTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEK 522
Query: 76 I--RTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYGL 133
I R PPTI KP+ LWTGKQ+ S + L P + +R G KQ+ L
Sbjct: 523 IKVRLPPPTILKPVTLWTGKQIFSVI---LRPSNDNPVRANLRTKG----KQYCGKGEDL 575
Query: 134 VHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
D++VTI++ EL+SG +DK GS ++ + + + G A +S LA+L V
Sbjct: 576 --CANDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPV 633
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
YL GF++G+ D+ Q + + +++N + C+ L+T Q Q
Sbjct: 634 YLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYK-----KCDEYIEALNTG----KLQQQP 684
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
+ A I ++ L + ++ CL E +N+ M G+KGS +N
Sbjct: 685 GCTAEETLEALILKE----LSVIRDHAGSACLRE----LDKSNSPLTMALCGSKGSFINI 736
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+ +GQ + G R R+LP F + P A GFV F +G+ P EFFFH M
Sbjct: 737 SQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTM 796
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKR 432
AGREGL+DTAVKT+ +GY+QR LVK LE L YD+TVR S +IQ +YG DGLD
Sbjct: 797 AGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAM 856
Query: 433 QYLTDK-QFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPHRTK 491
+ + +F + DNI K + + LS L+L T K F+ +
Sbjct: 857 EGKDEPLEFKRVLDNI------KAVFPCPSEPALSKNELILTTESIMKKSEFLCC--QDS 908
Query: 492 FTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRT 551
F ++ + + +K +K K +G + V Y R
Sbjct: 909 FLQEIKKFIKGVSEKIKKTRDK------------------YGINDNGTTEPRVLYQLDRI 950
Query: 552 DASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLG 611
+ V+KF + K + + PG VG L AQSIGEP TQMTL TFHFAG MN+TLG
Sbjct: 951 TPTQVEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLG 1010
Query: 612 IPRLREILMMATKAIKTP 629
+PR++EI+ A+KAI TP
Sbjct: 1011 VPRIKEII-NASKAISTP 1027
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 67/117 (57%), Gaps = 1/117 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N+ + + T GIEAA II E++ +G+ +D RH+ L++D MT+ G + + R G+
Sbjct: 1193 NNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGL 1252
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNR 1009
++ S + +FE + + A+ G++DS+ S +++G GTGLF+L ++
Sbjct: 1253 AKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHK 1309
>gi|47216067|emb|CAG04806.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1319
Score = 278 bits (710), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 208/624 (33%), Positives = 303/624 (48%), Gaps = 51/624 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF R++ +V L
Sbjct: 460 KAEALILMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRSKACQIVASILVGK 519
Query: 73 NTEIR-TLP-PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ ++R + P P I KPM LWTGKQ+ S + L P + G KQ+
Sbjct: 520 DEKVRISFPRPAIMKPMALWTGKQIFSVI---LKPSKDCPVNANLKTKG----KQYCGKG 572
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L H D+ V I + EL+ G +DK GS ++ + + + G A + +S LA+L
Sbjct: 573 EDLCHN--DSFVVIHNSELMCGSMDKGTLGSGSKNNIFYILLRDWGQLEAANAMSRLARL 630
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
VYL GF++G+ D+ Q + + +++ C+ L T Q
Sbjct: 631 APVYLSNRGFSIGIGDVTPGQGLLKAKHDLLDDGY-----TKCDEYIEALQTG----KLQ 681
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
Q + A I R+ + D+ CL E +N+ M G+KGS
Sbjct: 682 QQPGCTAEETLEALILRELSVIRDRA----GSACLRE----LDKSNSPLTMALCGSKGSF 733
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ +GQ + G R R+LP F + P A GFV F +G+ P EFFF
Sbjct: 734 INISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFF 793
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H MAGREGL+DTAVKT+ +GY+QR LVK LE L YD+TVR S +IQ +YG DGLD
Sbjct: 794 HTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDP 853
Query: 430 TKRQYLTDK-QFSFLEDNIK--WICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFS 486
+ + +F + DNI+ + CS + L+ + L+LT + K
Sbjct: 854 AAMEGKDEPLEFKRVLDNIRAVYACSDEPALSQNE---------LVLTADAIMK------ 898
Query: 487 PHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISEN-LADSVVK 545
RT F +L D +KY ++ K + + I++N ++ V
Sbjct: 899 --RTDFLCCRDSFLEELTDTGSEKYLEEIKKFVKSFSERIKKTRDKYGINDNGTSEPKVL 956
Query: 546 YTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGD 605
Y R + ++KF + K + + PG VG L AQSIGEP TQMTL TFHFAG
Sbjct: 957 YQLDRITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVAS 1016
Query: 606 MNVTLGIPRLREILMMATKAIKTP 629
MN+TLG+PR++EI+ A+K I TP
Sbjct: 1017 MNITLGVPRIKEII-NASKNISTP 1039
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 81/149 (54%), Gaps = 2/149 (1%)
Query: 865 SKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 924
+K+ L +G N+ + H + ++ N+ + + T GIEAA II E++ +G
Sbjct: 1150 NKYKLLVEGDNMRAV-MATHGVKGSRTTSNNTYEVEKTLGIEAARSTIINEIQYTMVNHG 1208
Query: 925 IEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDS 983
+ +D RH+ L+AD M++ G + + R G+ ++ S + +FE + + A+ G++DS
Sbjct: 1209 MSIDRRHVMLLADLMSYKGEILGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDS 1268
Query: 984 LRAPSARVMLGQECRQGTGLFQLRNREKK 1012
+ S +++G GTGLF+L ++ K
Sbjct: 1269 VCGVSECIIMGIPMNIGTGLFKLLHKADK 1297
>gi|91092426|ref|XP_968165.1| PREDICTED: similar to AGAP004703-PA [Tribolium castaneum]
gi|270004743|gb|EFA01191.1| hypothetical protein TcasGA2_TC010518 [Tribolium castaneum]
Length = 1390
Score = 278 bits (710), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 210/636 (33%), Positives = 296/636 (46%), Gaps = 94/636 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G L QD + G L+ +DTFL A L L
Sbjct: 526 KAEALILMGNKNNLVTPRNGELLIAATQDFLTGGYLLTKKDTFLDLAHASQLAATLLAEN 585
Query: 73 NTEIRT-LP-PTIWKPMPLWTGKQVLSTVI---------INLTPKDKVIIRHGELLSGIL 121
+T ++ LP P I KP LW+GKQ+ S + NL K K ++ EL
Sbjct: 586 DTNMQIDLPTPCILKPRRLWSGKQICSLIFRPNKKCPVKANLEAKGKAYTKNREL----- 640
Query: 122 DKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYG--LVHAVWDTHGAEHA 179
V D++V IR+ EL++G LDK GS G + + + G+E+A
Sbjct: 641 --------------CVKDSYVLIRNSELIAGTLDKSHLGSGGKGNNIFYVILRDFGSEYA 686
Query: 180 ISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPL 239
I + LAKL + YL GF++G+ D+ + R++ K++ E L
Sbjct: 687 IKSMWRLAKLTSYYLMNSGFSIGIGDVTPSKGLLRRKNKLLEDGYTKCDEYIRQMADGRL 746
Query: 240 DTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQF 299
P + + EA I ++ L + + Q CL E P N+
Sbjct: 747 QCQPGCTAEETLEAV---------ILKE----LSVIREHAGQACLAE----LHPTNSPLI 789
Query: 300 MVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFM 359
M SG+KGS +N Q+ +GQ L GKR R+LP F + +P A GFV+ F
Sbjct: 790 MALSGSKGSFINISQMIACVGQQALNGKRVPDGFENRSLPHFPHHSKTPEAKGFVENSFY 849
Query: 360 TGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQ 419
TG+ P EFFFH M GREGL+DTAVKT+ +GY+QR LVK LE L VHYD +VR+++ ++Q
Sbjct: 850 TGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLVVHYDGSVRNAEGDIVQ 909
Query: 420 VLYGEDGLDVTKRQYLTDK----QFSFLEDNIKWICSYK--VILNLLKKHPLSLALLLLL 473
V YG DGLD T Y+ K F + +++ C Y+ ILN ++
Sbjct: 910 VNYGGDGLDPT---YMEGKDCPVDFDRVLRHVQAKCPYRDETILNSVQ------------ 954
Query: 474 TFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFG 533
I +T D L + + K + K + + + F
Sbjct: 955 ----------IRRATKTFLETDALNECSEEFKAELKNFMDKVALRVENIYNKF------- 997
Query: 534 SISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQM 593
D V R S + F + K S+ PG VG LAAQSIGEP TQM
Sbjct: 998 ------GDGKVVKEIERLTCSQLVTFLQICGSKYTRSIIEPGTAVGALAAQSIGEPGTQM 1051
Query: 594 TLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
TL TFHFAG MN+T G+PR++EI+ A+K I TP
Sbjct: 1052 TLKTFHFAGVASMNITQGVPRIKEII-NASKDISTP 1086
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 65/118 (55%), Gaps = 1/118 (0%)
Query: 890 KLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMN 949
K N+I + T GIEAA I+ E+K V +G+ VD RH+ L+A MTH+G + +
Sbjct: 1249 KTVSNNIMEVYHTLGIEAARETIMSEIKMVMENHGMSVDYRHIMLLAAQMTHTGEVLGIT 1308
Query: 950 RNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
R G+ ++ S + +FE + + A+ G+ D + S +++G GTG+F+L
Sbjct: 1309 RYGLSKMKQSILNLASFEKTADHLFDAAYYGQVDKINGVSENIIMGMPAPIGTGIFKL 1366
>gi|410895601|ref|XP_003961288.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
[Takifugu rubripes]
Length = 1390
Score = 277 bits (709), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 205/623 (32%), Positives = 305/623 (48%), Gaps = 61/623 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF R++ +V L
Sbjct: 516 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRSKSCQIVASILVGK 575
Query: 73 NTEIR-TLP-PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ ++R +LP P I KPM LWTGKQ+ S + L P + + G KQ+
Sbjct: 576 DEKVRISLPRPAIMKPMALWTGKQIFSVI---LKPSKECPVNANLRTKG----KQYCGKG 628
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L H D+ V I + EL+ G +DK GS ++ + + + G A + +S LA+L
Sbjct: 629 EDLCHN--DSFVVIHNSELMCGSMDKGTLGSGSKNNIFYILLRDWGQLEAANAMSRLARL 686
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
VYL GF++G+ D+ Q + + +++ C+ L T Q
Sbjct: 687 APVYLSNRGFSIGIGDVTPGQSLLKAKHDLLDDGY-----MKCDEYIDALQTG----KLQ 737
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
Q ++ A I R+ + D+ CL E +N+ M G+KGS
Sbjct: 738 QQPGCSAEETLEALILRELSVIRDRA----GSACLRE----LDKSNSPLIMALCGSKGSF 789
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ +GQ + G R R+LP F + P A GFV F +G+ P EFFF
Sbjct: 790 INISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFF 849
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H MAGREGL+DTAVKT+ +GY+QR LVK LE L YD+TVR S +IQ +YG DGLD
Sbjct: 850 HTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDP 909
Query: 430 TKRQYLTDK-QFSFLEDNIK--WICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFS 486
+ + +F + DNI+ + CS + LS L+L + + +F+
Sbjct: 910 AAMEGKDEPLEFKRVLDNIRAVYTCS--------DEPALSQNELVLTADAITKRADFLCC 961
Query: 487 PHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKY 546
R F ++ ++++ + + KK R K +G ++ V Y
Sbjct: 962 --RDSF-LEEIKKFVKGFSERIKKTRDK-----------------YGINDNGTSEPKVLY 1001
Query: 547 TKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDM 606
R + +++F + K + + PG VG L AQSIGEP TQMTL TFHFAG M
Sbjct: 1002 QLDRITPTQLERFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASM 1061
Query: 607 NVTLGIPRLREILMMATKAIKTP 629
N+TLG+PR++EI+ A+K I TP
Sbjct: 1062 NITLGVPRIKEII-NASKNISTP 1083
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 83/150 (55%), Gaps = 2/150 (1%)
Query: 865 SKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 924
+K+ L +G N+ + H ++ ++ N+ + T GIEAA II E++ +G
Sbjct: 1221 NKYKLLVEGDNLRAV-MATHGVNGSRTTSNNTFEVEKTLGIEAARSTIINEIQYTMVNHG 1279
Query: 925 IEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDS 983
+ +D RH+ L+AD M++ G + + R G+ ++ S + +FE + + A+ G++DS
Sbjct: 1280 MSIDRRHVMLLADLMSYKGEILGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDS 1339
Query: 984 LRAPSARVMLGQECRQGTGLFQLRNREKKK 1013
+ S +++G GTGLF+L ++ +K+
Sbjct: 1340 VCGVSECIIMGIPMNIGTGLFKLLHKAEKE 1369
>gi|317419477|emb|CBN81514.1| DNA-directed RNA polymerase III subunit RPC1 [Dicentrarchus labrax]
Length = 1390
Score = 277 bits (709), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 206/623 (33%), Positives = 305/623 (48%), Gaps = 61/623 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF R++ +V L
Sbjct: 516 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRSKACQIVASILVGK 575
Query: 73 NTEIR-TLP-PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ +IR TLP P I KPM LWTGKQ+ S + L P + ++ G KQ+
Sbjct: 576 DEKIRVTLPRPAIMKPMALWTGKQIFSVI---LKPSKECPVKANLRTKG----KQYCGKG 628
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L + D+ V I + EL+ G LDK GS ++ + + + G A + +S LA+L
Sbjct: 629 EDLCYN--DSFVVIHNSELMCGSLDKGTLGSGSKNNIFYILLRDWGQLEAANAMSRLARL 686
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
V+L GF++G+ D+ Q + + +++ + C+ L T Q
Sbjct: 687 APVFLSNRGFSIGIGDVTPGQGLLKAKHDLLDDGYK-----KCDEYIEALKTG----KLQ 737
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
Q + A I R+ + D+ CL E +N+ M G+KGS
Sbjct: 738 QQPGCTAEETLEALILRELSVIRDRA----GSACLRE----LDKSNSPLIMALCGSKGSF 789
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ +GQ + G R R+LP F + P A GFV F +G+ P EFFF
Sbjct: 790 INISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVADSFYSGLTPTEFFF 849
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H MAGREGL+DTAVKT+ +GY+QR LVK LE L YD+TVR S +IQ +YG DGLD
Sbjct: 850 HTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDP 909
Query: 430 TKRQYLTDK-QFSFLEDNIK--WICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFS 486
+ + +F + DNI+ + C Y + LS L+L + +F+
Sbjct: 910 ADMEGKDEPLEFKRVLDNIRAVYTCPY--------EPALSQNELVLTADAIMKRADFLCC 961
Query: 487 PHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKY 546
R F ++ ++++ + + KK R K +G ++ V Y
Sbjct: 962 --RDSF-LEEIKKFIKSVSERIKKTRDK-----------------YGINDNGTSEPKVLY 1001
Query: 547 TKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDM 606
R + ++K+ + K + + PG VG L AQSIGEP TQMTL TFHFAG M
Sbjct: 1002 QLDRITPTQLEKYLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASM 1061
Query: 607 NVTLGIPRLREILMMATKAIKTP 629
N+TLG+PR++EI+ A+K I TP
Sbjct: 1062 NITLGVPRIKEII-NASKNISTP 1083
Score = 70.1 bits (170), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 83/150 (55%), Gaps = 2/150 (1%)
Query: 864 ESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
++K+ L +G N+ + H ++ ++ N+ + + T GIEAA II E++ +
Sbjct: 1220 KNKYKLLVEGDNLRAV-MATHGVNGSRTTSNNTYEVEKTLGIEAARSTIINEIQYTMVNH 1278
Query: 924 GIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGRED 982
G+ +D RH+ L+AD M++ G + + R G+ ++ S + +FE + + A+ G++D
Sbjct: 1279 GMSIDRRHVMLLADLMSYKGEILGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKD 1338
Query: 983 SLRAPSARVMLGQECRQGTGLFQLRNREKK 1012
S+ S +++G GTGLF+L ++ K
Sbjct: 1339 SVCGVSECIIMGIPMNIGTGLFKLLHKADK 1368
>gi|316997015|dbj|BAJ52635.1| RNA polymerase III largest subunit [Ephydatia fluviatilis]
Length = 899
Score = 277 bits (708), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 216/653 (33%), Positives = 313/653 (47%), Gaps = 93/653 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM V S + P++G PL IQD + + L+ +D F RA + +V L
Sbjct: 11 KAEAVVLMGVKSNLVTPRNGEPLIAAIQDFITASYLLTQKDVFFDRALFCQVVASMLHGK 70
Query: 73 NT--EIRTLPPTIWKPMPLWTGKQVLS---------TVIINLTPKDKVIIRHGELLSGIL 121
+T +I PP IWKP LWTGKQV+S +VI+NL K K + +L S
Sbjct: 71 DTLLKIDIPPPAIWKPAKLWTGKQVISLLIRPNQNSSVIMNLRAKGKQYTKGEDLCS--- 127
Query: 122 DKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAI 180
D+ V I + + + G LDK GS ++ + + + +G + A
Sbjct: 128 ----------------CDSFVVIYNSQHMCGCLDKSALGSGSKTNIFYILLRDYGEQVAA 171
Query: 181 SLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTE--AACNALGLP 238
+S LA+L +L GF++G+ D+ + K+I RL TE A C
Sbjct: 172 DCMSRLARLCPYFLTNRGFSMGISDVTPGK-------KLIAAKERLVTEGYAKCE----- 219
Query: 239 LDTDPEIISSQLQEAYASIPQFRAQIDRQYKSL--LDKVTNNINQVCLPEGLIEPFPANN 296
+ ISS + + P A+ + K L L + + + C E N
Sbjct: 220 -----DFISSFKEGKLQTQPGCTAEETLEAKILHELSVIRESAGKACKSE----LHHTNG 270
Query: 297 LQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDG 356
M SG+KGS +N Q+ +GQ + GKR R+LP F SP A GFV+
Sbjct: 271 PLIMALSGSKGSFINISQMIACVGQQAISGKRIPDGFEDRSLPHFPRKSKSPGAKGFVEN 330
Query: 357 RFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLS 416
F TG+ P EFFFH + GREGL+DTAVKT+ +GY+QR LVK LE L +YD+TVR+S+
Sbjct: 331 SFFTGLNPAEFFFHTVGGREGLVDTAVKTAETGYMQRRLVKSLEDLCSNYDLTVRNSEGF 390
Query: 417 LIQVLYGEDGLDVTKRQYL-TDKQFSFLEDNI--KWICSYKVILNLLKKHPLSLALLLLL 473
++Q YG DGLD + +F + +I K+ C + L+ P L L +
Sbjct: 391 VVQFTYGGDGLDPAAMEGQDIPVEFPRVLQHIKAKFPCRNESPLS-----PSQLEFLCEM 445
Query: 474 TFKSSGKPNFIFSPHRTKFTM--------DLLEQ-W--YQLDDKARKKYRKKFKACPQPL 522
K+ +F F K M +L+Q W + L+D + K +A L
Sbjct: 446 ILKA----DFQFCSDEFKRGMKEFLDKVTKILQQGWNRHGLEDPFAQGKEKCGRA--GEL 499
Query: 523 ISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLA 582
+S P + V Y + R + ++ F ++ K + + PG VG +
Sbjct: 500 LSPVDP-----------SKPSVLYEQDRITKTQLENFVNVCSDKYMRARTEPGTAVGAIC 548
Query: 583 AQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPF 635
AQSIGEP TQMTL TFHFAG MN+TLG+PR++EI+ A+K I TP + P
Sbjct: 549 AQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEII-NASKIISTPIITAPL 600
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
Query: 902 TYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFI 960
T GIEAA + II E+ + +G+ +D RH+ L+AD MT G + + R G+ ++ S +
Sbjct: 769 TLGIEAARKTIIDEIAYTMSSHGMSIDVRHVMLLADLMTFKGEVLGITRFGLAKMRESVL 828
Query: 961 QKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNREKK 1012
+FE + + A+ G+ED++ S +++G GTGLF+L ++ K
Sbjct: 829 MLASFEKTADHLFDAAFHGQEDAINGVSECIIMGIPMSIGTGLFKLLHKSAK 880
>gi|348508629|ref|XP_003441856.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
[Oreochromis niloticus]
Length = 1390
Score = 276 bits (706), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 204/621 (32%), Positives = 302/621 (48%), Gaps = 57/621 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF R++ +V L
Sbjct: 516 KAEALILMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRSKACQIVASILVGK 575
Query: 73 NTEIR-TLP-PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ +R +LP P I KPM LWTGKQ+ S + L P + + G KQ+
Sbjct: 576 DERVRISLPRPAIIKPMALWTGKQIFSLI---LKPSKECPVNANLRTKG----KQYCGKG 628
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L H D+ V I + EL+ G +DK GS ++ + + + G A + +S LA+L
Sbjct: 629 EDLCHN--DSFVVIHNSELMCGSMDKGTLGSGSKNNIFYILLRDWGQLEAANAMSRLARL 686
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
VYL GF++G+ D+ Q + + +++ + C+ LDT Q
Sbjct: 687 APVYLSNRGFSIGIGDVTPGQGLLKAKQDLLDDGYK-----KCDEYIEALDTG----KLQ 737
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
Q + A I ++ + D+ CL E +N+ M G+KGS
Sbjct: 738 QQPGCTAEETLEALILKELSVIRDRA----GSACLRE----LDKSNSPLIMALCGSKGSF 789
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ +GQ + G R R+LP F + P A GFV F +G+ P EFFF
Sbjct: 790 INISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVADSFYSGLTPTEFFF 849
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H MAGREGL+DTAVKT+ +GY+QR LVK LE L YD+TVR S +IQ +YG DGLD
Sbjct: 850 HTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDP 909
Query: 430 TKRQYLTDK-QFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPH 488
+ + +F + DNI + + + LS L+L + +F+
Sbjct: 910 AAMEGKDEPLEFKRVLDNI------RAVYTCPDEPALSQNELVLTADAIMKRADFLCC-- 961
Query: 489 RTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK 548
R F ++ ++++ + + KK R K +G ++ V Y
Sbjct: 962 RDSF-LEEIKKFIKSVSERIKKTRDK-----------------YGINDNGTSEPKVLYQL 1003
Query: 549 GRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
R + ++KF + K + + PG VG L AQSIGEP TQMTL TFHFAG MN+
Sbjct: 1004 DRVTPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNI 1063
Query: 609 TLGIPRLREILMMATKAIKTP 629
TLG+PR++EI+ A+K I TP
Sbjct: 1064 TLGVPRIKEII-NASKNISTP 1083
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 84/153 (54%), Gaps = 2/153 (1%)
Query: 861 EEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 920
+ +SK+ L +G N+ + H ++ ++ N+ + + T GIEAA II E++
Sbjct: 1217 QSSKSKYKLLVEGDNLRAV-MATHGVNGSRTTSNNTYEVEKTLGIEAARSTIINEIQYTM 1275
Query: 921 AVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQG 979
+G+ +D RH+ L+AD M++ G + + R G+ ++ S + +FE + + A+ G
Sbjct: 1276 VNHGMSIDRRHVMLLADLMSYKGEILGITRFGLAKMKESVLMLASFEKTADHLFDAAYFG 1335
Query: 980 REDSLRAPSARVMLGQECRQGTGLFQLRNREKK 1012
++DS+ S +++G GTGLF+L ++ +
Sbjct: 1336 QKDSVCGVSECIIMGIPMNIGTGLFKLLHKADR 1368
>gi|297301053|ref|XP_002805710.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like [Macaca
mulatta]
Length = 1405
Score = 276 bits (706), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 207/636 (32%), Positives = 302/636 (47%), Gaps = 72/636 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF RA+ ++ L
Sbjct: 516 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 575
Query: 73 NTEI--RTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ +I R PPTI KP+ LWTGKQ+ S + L P D +R G KQ+
Sbjct: 576 DEKIKVRLPPPTILKPVTLWTGKQIFSVI---LRPSDDNPVRANLRTKG----KQYCGKG 628
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAV----W---DTHGAEHAISLL 183
L D++VTI++ EL+SG +DK GS + + W + G ++ SL+
Sbjct: 629 EDL--CANDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEATGLDYKTSLM 686
Query: 184 SCL----AKLFTVYLQRV-----GFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNA 234
C + R+ GF++G+ D+ Q + + +++N + C+
Sbjct: 687 GCFQDTCGSTRVIQFSRITQSNRGFSIGIGDVTPGQGLLKAKYELLNAGYK-----KCDE 741
Query: 235 LGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPA 294
L+T Q Q + A I ++ L + ++ CL E +
Sbjct: 742 YIEALNTG----KLQQQPGCTAEETLEALILKE----LSVIRDHAGSACLRE----LDKS 789
Query: 295 NNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFV 354
N+ M G+KGS +N Q+ +GQ + G R R+LP F + P A GFV
Sbjct: 790 NSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFV 849
Query: 355 DGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSD 414
F +G+ P EFFFH MAGREGL+DTAVKT+ +GY+QR LVK LE L YD+TVR S
Sbjct: 850 ANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSST 909
Query: 415 LSLIQVLYGEDGLDVTKRQYLTDK-QFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLL 473
+IQ +YG DGLD + + +F + DNI K + + LS L+L
Sbjct: 910 GDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNI------KAVFPCPSEPALSKNELILT 963
Query: 474 TFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFG 533
T K F+ + F ++ + + +K +K K +G
Sbjct: 964 TESIMKKSEFLCC--QDSFLQEIKKFIKGVSEKIKKTRDK------------------YG 1003
Query: 534 SISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQM 593
+ V Y R + V+KF + K + + PG VG L AQSIGEP TQM
Sbjct: 1004 INDNGTTEPRVLYQLDRITPTQVEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQM 1063
Query: 594 TLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
TL TFHFAG MN+TLG+PR++EI+ A+KAI TP
Sbjct: 1064 TLKTFHFAGVASMNITLGVPRIKEII-NASKAISTP 1098
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 67/117 (57%), Gaps = 1/117 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N+ + + T GIEAA II E++ +G+ +D RH+ L++D MT+ G + + R G+
Sbjct: 1264 NNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGL 1323
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNR 1009
++ S + +FE + + A+ G++DS+ S +++G GTGLF+L ++
Sbjct: 1324 AKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHK 1380
>gi|344305554|gb|EGW35786.1| DNA-directed RNA polymerase III subunit C1 [Spathaspora passalidarum
NRRL Y-27907]
Length = 1445
Score = 276 bits (705), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 205/662 (30%), Positives = 313/662 (47%), Gaps = 83/662 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + L PK G P+ QD + +S +D+F RA ++ L+ +
Sbjct: 525 RAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRASFVQLL-SMMSDA 583
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLS---------TVIINLTPKDKVIIRHGELLSGILDK 123
+ + PPTI+KP+ LWTGKQV S VIINL K+K I + L +
Sbjct: 584 DVQFDLPPPTIFKPVMLWTGKQVFSLLIKPNKKSNVIINLDAKNKTFIPPAKGLPSEMSP 643
Query: 124 KQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFG-STQYGLVHAVWDTHGAEHAISL 182
D V IR ++LSG++DK G ++ + + + +G + A S
Sbjct: 644 N--------------DGFVIIRGSQILSGLMDKSTLGDGKKHSVFYTILRDYGPQEAASA 689
Query: 183 LSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTD 242
++ +AKL YL GF++G+ D+ + +K+ ++ +A E L+T
Sbjct: 690 MNRMAKLCARYLGNRGFSIGINDVTPETKLKQKKELMVEQAYLKCDELIDLYNRGKLETQ 749
Query: 243 PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPE--GLIEPFPANNLQFM 300
P Q EA + LL KV + + C+ E + P M
Sbjct: 750 PGCNEEQTLEA-------------KIGGLLSKVREEVGEECIRELDSMNAPL------IM 790
Query: 301 VESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMT 360
G+KGST+N Q+ ++GQ + G R R+LP F +P++ GFV F +
Sbjct: 791 ATCGSKGSTLNVSQMVAVVGQQIISGHRVPDGFQDRSLPHFTKNSKTPQSKGFVRNSFYS 850
Query: 361 GIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQV 420
G+ P EF FH ++GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR+S ++Q
Sbjct: 851 GLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSAQYDNTVRNSSNGIVQF 910
Query: 421 LYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILN-----LLKKHPLSLALLL---- 471
YG DGLD Y + + N +W +Y + + LL P + L+
Sbjct: 911 TYGGDGLD----PYDMEGDAKPVNFNRQWDHAYNLTYDGDETGLL---PYEIKRLVDSIL 963
Query: 472 ------LLTFKSSGKPNFIFSPHRTKFT--MDLLEQWYQ-----LDDKARKKYRKKFKAC 518
L+ + + G+ R ++ D ++YQ L KA K R +
Sbjct: 964 TPLESKLIRYDNLGRELADADQDRIEYIDQNDAEREFYQSLRDFLGKKAEKLARLREAKG 1023
Query: 519 PQPLISTFQPDAHF--GSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGE 576
QP + + + + N + ++K + + V+KF + YK + PG
Sbjct: 1024 LQPFFTKIESEMSVDEDEVKLNSINQLLKIS-----SKTVEKFLEQCLYKYSRARVEPGT 1078
Query: 577 NVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFL 636
VG + AQSIGEP TQMTL TFHFAG MNVTLG+PR++EI+ A+K I TP + +
Sbjct: 1079 AVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII-NASKTISTPIINAVLV 1137
Query: 637 PD 638
D
Sbjct: 1138 ND 1139
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 78/152 (51%), Gaps = 13/152 (8%)
Query: 866 KHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 925
K ++ TDG+ V + H+L++ ++ GIEAA II+E+ + +G+
Sbjct: 1289 KDVMSTDGV-VGTKTTTNHVLEVFEIL-----------GIEAARSSIIKEIDYTMSNHGM 1336
Query: 926 EVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSL 984
VDPRH+ L+ D MT+ G + + R G+ ++ S +Q +FE + + A+ + D +
Sbjct: 1337 SVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFFMKNDKI 1396
Query: 985 RAPSARVMLGQECRQGTGLFQLRNREKKKKKV 1016
S ++LGQ GTG F+L KKV
Sbjct: 1397 EGVSECIILGQTMSIGTGSFKLVKSSNYDKKV 1428
>gi|4001824|gb|AAD12604.1| largest subunit of RNA polymerase II [Vairimorpha necatrix]
Length = 1605
Score = 274 bits (700), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 234/735 (31%), Positives = 344/735 (46%), Gaps = 122/735 (16%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S+ KAE L VS Q L P+ P+ G++QD + + +LRD+F R E M L+Y +
Sbjct: 463 SYNSKAELEELCLVSKQVLSPQSNKPVMGIVQDSLTALRLFTLRDSFFDRRETMQLLY-S 521
Query: 69 LCILNTEIRTLP----------------------------PTIWKPMPLWTGKQVLSTVI 100
+ I N E P I P LWTGKQ+LS ++
Sbjct: 522 VNINNYEFTDSSKLIMTHDDSFGNNLHTEESSNIMKILNFPAISYPKKLWTGKQILSYIL 581
Query: 101 INLTPKDKVIIRHGELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFG 160
N K + E L V D++V IR+GE+LSGI+DKK G
Sbjct: 582 PNTIYNGKSNEHNEEDLEN-----------------VEDSYVIIRNGEILSGIIDKKAVG 624
Query: 161 STQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKI 219
STQ GL+H + + G + K+ +Y + F++G+ D + +E + +
Sbjct: 625 STQGGLIHIIANDFGPDRVTCFFDDAQKMMNLYFATINAFSIGIGDAIADKETMSQVQRS 684
Query: 220 INKARRLGTEAACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNI 279
I A+ E A L+ P + R + Q +L+K +I
Sbjct: 685 IETAKEQVNEIIVKAQKNKLERLPGM-------------SMRESFESQVNYILNK-PRDI 730
Query: 280 NQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLP 339
+ + L F NN++ MV +G+KGS +N Q++ LGQ +EGKR + R+LP
Sbjct: 731 SGASASKSL--SF-CNNMRTMVLAGSKGSFINISQVTACLGQQNVEGKRIPFGFNYRSLP 787
Query: 340 SFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHL 399
F + S ++ GFV+ ++ GI P+EFFFH M GREGLID A+KT+ +GY+QR LVK +
Sbjct: 788 HFSKADYSGKSRGFVENSYVKGITPEEFFFHAMGGREGLIDIAIKTAETGYIQRRLVKAM 847
Query: 400 EGLTVHYDMTVRDSDLSLIQVLYGEDGLDVT--KRQYLTDKQFSFLEDNIKWICSYKVIL 457
E TV D +VR +D + Q YGEDG D T + Q +T + +D S+K
Sbjct: 848 EDATVTLDRSVRGADGFIYQYEYGEDGFDATFLEMQKMTHDDVATKDD-----VSFK--- 899
Query: 458 NLLKKHPLSLALLLLLTFKSSGKPNFIFSPHRTKFTMD-LLEQWYQLDDKARKKYRKKFK 516
NL H + + L K + I+ T + +L ++ ++ KKY K
Sbjct: 900 NL---HLVDMFTDLNFAIKKENVTDQIYKLLTTDVNLQKILYDEFEWLNENVKKYEKMNI 956
Query: 517 ACP---QPLI--STFQPDAHFGSIS------------ENLA------DSVVKYTKGRTDA 553
A P Q +I + ++ D G IS ENL + ++KY
Sbjct: 957 ASPCNFQRIINLAIYKFDCRKGDISPYLILDTLKNLIENLPIKNLLIEILIKYNLSIKRI 1016
Query: 554 SHVDKF----YDMIF----YKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGD 605
+ K Y+ I +K L S+ +P E VG LAAQS+GEP+TQMTLNTFH AG
Sbjct: 1017 LNEYKLSLEAYNWILKEIKFKILKSIISPNEMVGTLAAQSVGEPATQMTLNTFHLAGVS- 1075
Query: 606 MNVTLGIPRLREILMMATKAIKTPSMEI----PFLPDMPKLEKKANRLAKS-------MT 654
N+T+G+PRL+EI+ +A K IKTP M+I PF + +K + L S +
Sbjct: 1076 ANITMGVPRLKEIINVA-KNIKTPCMKIYLKDPFNKTLEMAKKIQSELEFSDIKSLCEFS 1134
Query: 655 RITMADVLEKVKIKE 669
I V+E IKE
Sbjct: 1135 EIYYDPVIEDTSIKE 1149
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 73/139 (52%), Gaps = 2/139 (1%)
Query: 869 LKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 928
L+TDG+ + I + ++ + + + ND++ + GIEAA I+ E+ V G V+
Sbjct: 1269 LQTDGVCIREIFSHPNV-EGHLVTSNDLNEIVEVLGIEAARETILNELTLVIDGNGSYVN 1327
Query: 929 PRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAP 987
RH+SL+AD MT G + R+G+ ++ ++ +FE ++ + A++ + +
Sbjct: 1328 HRHISLLADVMTMKGYLTGITRHGVNKVGFGCTKRASFEETVDILLDAALVAEKYVTKGY 1387
Query: 988 SARVMLGQECRQGTGLFQL 1006
+ +M+G GTG+ L
Sbjct: 1388 TENIMMGHLAPLGTGIGNL 1406
>gi|340055538|emb|CCC49857.1| putative DNA-directed rna polymerase I largest subunit [Trypanosoma
vivax Y486]
Length = 1801
Score = 273 bits (699), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 174/448 (38%), Positives = 232/448 (51%), Gaps = 60/448 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAE S LM+ +S YLVP G P+ GLIQDH+++G L+LRD F RA ++ LVY L
Sbjct: 656 KAEISSLMDANSNYLVPTSGKPIRGLIQDHIVAGVMLTLRDKFFDRATFVQLVYYGLGTY 715
Query: 73 ------NTEIRTLP-PTIWKPMPLWTGKQVLSTVI-----------INLTPKDKVIIRHG 114
T +P P I P PLWTGKQV+S V N+ + V IR
Sbjct: 716 LQQQGQVTLSELIPVPAILMPRPLWTGKQVISVVTRFVSYSGGEGDFNVQNESGVSIRGT 775
Query: 115 ELLS-GILDKKQFGSTQYGLV--HAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVW 171
L+ D GS Q + A+ D V + ELL G+L KKQ G++ + H +
Sbjct: 776 SLIQPSAFDTTPAGSDQVRSMPRTAIDDNMVLFMNSELLIGLLCKKQLGASSMSIAHVIH 835
Query: 172 DTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAA 231
+ +G L L ++ + LQ GF+ G+ D+ + QE+ R
Sbjct: 836 ELYGPHKVGQLFGALGRILMLSLQSEGFSFGMDDMCLVQEKRR----------------- 878
Query: 232 CNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKV---TNNINQVCLPEGL 288
C L QL EA S+P A + + K+ + + Q +P +
Sbjct: 879 CELL------------RQLDEAPLSLPDDEA-------TAMTKIMEHSTKLQQEFMPGRM 919
Query: 289 IEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSP 348
PFP N+L M SGAKGS+ N Q+S LGQ +G R M SG+TLP+F E
Sbjct: 920 KIPFPRNHLLMMTTSGAKGSSANATQMSLGLGQQLFDGLRVKRMNSGKTLPAFFINEKRA 979
Query: 349 RAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDM 408
R+ G+ G F +GI+P E+ H MAGR+GLIDTAVKTSRSG+LQRCL+K LE L VH D
Sbjct: 980 RSFGYAIGSFASGIRPSEYVIHAMAGRDGLIDTAVKTSRSGHLQRCLIKGLESLVVHMDH 1039
Query: 409 TVRDSDLSLIQVLYGEDGLDVTKRQYLT 436
+VRDS+ S+IQ +YG DGLD K LT
Sbjct: 1040 SVRDSNGSVIQFMYGGDGLDPCKASTLT 1067
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 60/97 (61%), Gaps = 2/97 (2%)
Query: 566 KNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKA 625
K + GE VG+LAAQ+ GEPSTQMTLNTFH AG +VT GIPRLRE+L+ A+
Sbjct: 1197 KRAWAFCEAGEPVGLLAAQAAGEPSTQMTLNTFHSAGSTVKHVTEGIPRLRELLIYAS-- 1254
Query: 626 IKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVL 662
++ ++ +P + + E R+ ++ I ++D L
Sbjct: 1255 VRNAAVVVPVKNAVEEDEAAIARILRAGVAIKLSDCL 1291
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Query: 895 DIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNG-I 953
DI MA+T G+E+A + E+ +F Y VD RHLSL+AD TH G + N G I
Sbjct: 1675 DIREMANTLGVESAYNALYDELSKLFRRY--SVDSRHLSLIADTATHRGKWENFNFTGVI 1732
Query: 954 RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+ S + +MTF + A +G D L++ S+ +++G+ R GT +L
Sbjct: 1733 SQSASPLFQMTFASSKRWLHLAVSRGLSDELQSISSAIIVGERPRVGTACAKL 1785
>gi|405974578|gb|EKC39212.1| DNA-directed RNA polymerase III subunit RPC1 [Crassostrea gigas]
Length = 1368
Score = 273 bits (697), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 208/638 (32%), Positives = 298/638 (46%), Gaps = 71/638 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM S + P++G PL IQD + G ++ +D FL RA L+ +L
Sbjct: 514 KAEAITLMGSKSNIITPRNGEPLIAAIQDFITGGYLITQKDVFLDRARACQLIAS---ML 570
Query: 73 NTEIRTL-----PPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
+ RTL PP I KP+ LWTGKQ+ S + L P +R G K +
Sbjct: 571 SGRERTLKIDLPPPAIIKPIKLWTGKQIFSVL---LRPNKNSPVRANLWTKG----KNYS 623
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCL 186
G + D+ V IR+ ELL G +DK G ++ + + + G + A LS L
Sbjct: 624 G---GEDLCINDSFVVIRNSELLCGAMDKGTLGGGSKNNIFYVILRDFGEQEAADALSRL 680
Query: 187 AKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEII 246
A+L YL GF++G+ D+ + + ++ C++ D E
Sbjct: 681 ARLCPAYLSHRGFSIGIGDVTPGAGLIKAKNNLLEDGY-----TKCDSF----IRDLEEG 731
Query: 247 SSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAK 306
Q Q + A I R+ L + ++ + CL E P N M G+K
Sbjct: 732 KLQTQPGCSEEETLEAMILRE----LSVIRDHAGKACLRELHKSNSPLN----MAICGSK 783
Query: 307 GSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQE 366
GS +N Q+ +GQ + GKR R LP F + P A GFV+ F +G+ P E
Sbjct: 784 GSFINISQMIACVGQQAISGKRTPNGFEDRALPHFEKFSKDPAARGFVENSFYSGLTPTE 843
Query: 367 FFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDG 426
FFFH MAGREGL+DTAVKT+ +GY+QR LVK LE L HYD+TVR S ++Q +YG D
Sbjct: 844 FFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSHYDLTVRSSTNDIVQFVYGGDS 903
Query: 427 LDVTKRQYLTDKQFSF--LEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFI 484
LD + D+ F + D+IK ++ P SL+ L F ++ +
Sbjct: 904 LDPASMEG-KDQPIDFKRVYDHIKANTRSS-----FREEP-SLSGADLRAFVNTTLQENL 956
Query: 485 FSPHRTKFTMDLLEQWYQLD---DKARKKYRKKFKACPQPLISTFQPDAHFGSISENLAD 541
F F DL+ + DK R+K FG ++ ++
Sbjct: 957 FKSFSDDFKKDLINFIDDVGSEIDKTRQK---------------------FGMMNAQRSE 995
Query: 542 -SVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHF 600
V + R S +F ++ K + S PG VG + AQSIGEP TQMTL TFHF
Sbjct: 996 LPPVLFELNRITTSQAKQFLNICRDKFMKSQIEPGTAVGAVCAQSIGEPGTQMTLKTFHF 1055
Query: 601 AGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPD 638
AG MN+T G+PR++EI+ A+K I TP + + D
Sbjct: 1056 AGVASMNITQGVPRIKEII-NASKNISTPIITAELMVD 1092
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N+ M T GIEAA I+ EV + +G+ +D RH+ L+AD MT G + + R G+
Sbjct: 1248 NNTFAMERTLGIEAARTTIMNEVNFTMSSHGMSIDIRHVMLLADLMTFKGEVLGITRFGL 1307
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRA 986
++ S + +FE + + +A+ G+ D++ A
Sbjct: 1308 AKMKESVLMLASFEKTADHLFEAAYHGQRDTINA 1341
>gi|345489196|ref|XP_001602571.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like [Nasonia
vitripennis]
Length = 1355
Score = 272 bits (696), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 210/662 (31%), Positives = 321/662 (48%), Gaps = 72/662 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM S + P++G L QD + G L+ +DTFL +++ L+ L
Sbjct: 488 RAEALVLMGNKSNLVTPRNGELLIAATQDFITGGYLLTQKDTFLNKSQVSQLISCLLAGE 547
Query: 73 NTEIR-TLP-PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+T ++ TLP P I KP +WTGKQ+ S + L P +K ++ G + + S +
Sbjct: 548 DTTMQITLPKPAILKPAIMWTGKQIFSVI---LRPNEKCPVKANLKTKG----RAYTSNE 600
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
++ D++V IR+ +LL+G +DK GS + + + + G + A ++ LA++
Sbjct: 601 ELCIN---DSYVIIRNSQLLAGSMDKSTLGSGAKQNIFYILLRDWGEDVAALVMWRLARI 657
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTE--AACNALGLPLDTDPEIIS 247
+ +L GF++G+ D+ R + +++N TE A LP
Sbjct: 658 ASYFLMNRGFSIGIGDVTPGHSLLRAKQELLNNGYGKCTEYIRKMEAGKLPC-------- 709
Query: 248 SQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKG 307
Q + A I ++ L + ++ +VCL E P+N+ M SG+KG
Sbjct: 710 ---QPGCSEEESLEAMILKE----LSVIRDHAGKVCLKE----LHPSNSPLVMALSGSKG 758
Query: 308 STVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEF 367
S +N Q+ +GQ + G R R LP F Y P A GFV+ F +G+ P EF
Sbjct: 759 SFINISQMIACVGQQAISGHRVPNGFEDRALPHFEKYSKVPAAKGFVENSFYSGLTPTEF 818
Query: 368 FFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL 427
FFH M GREGL+DTAVKT+ +GY+QR LVK LE L +HYD+TVR+S ++QVLYG D +
Sbjct: 819 FFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCLHYDLTVRNSTGDIVQVLYGGDAM 878
Query: 428 DVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSP 487
D T Y+ K YK +L+ +K + + + P
Sbjct: 879 DPT---YMEGKDCPV---------DYKRVLDDVKSRSTHIT------------EDPLDGP 914
Query: 488 HRTKFTMDLL--EQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVK 545
K T LL E + L D+ +++ + KA + Q I N V K
Sbjct: 915 GIMKATSLLLDSEDFACLSDEFKQELAQFLKAVAIKIARVRQ------HIKSNDNQPVYK 968
Query: 546 YTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGD 605
Y + R S + +F K + + PG VG LAAQSIGEP TQMTL TFHFAG
Sbjct: 969 YIE-RLTVSQLAEFIHTCKEKYMKAKIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVAS 1027
Query: 606 MNVTLGIPRLREILMMATKAIKTPSMEIPFLPDM-PKLEKKANRLAKSMTRITMADVLEK 664
MN+T G+PR++EI+ A I TP + D P+ A R+ + + T+ ++ E
Sbjct: 1028 MNITQGVPRIKEII-NANPKISTPIITAALENDTDPEF---ARRVKGRIEKTTLGEITEY 1083
Query: 665 VK 666
++
Sbjct: 1084 IE 1085
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
Query: 902 TYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFI 960
T GIEAA I+ E+K V +G+ +D RH LVAD MT G + + R G+ ++ S +
Sbjct: 1223 TLGIEAARATIMTEIKLVMENHGMSIDRRHPMLVADLMTSRGEVLGITRQGLAKMKESVL 1282
Query: 961 QKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNREKK 1012
+FE + + A+ G++D++ S +++G GTG+F+L ++ +K
Sbjct: 1283 NLASFEKTADHLFDAAYYGQKDAISGVSESIIMGIPVPVGTGIFKLLHKSEK 1334
>gi|399949602|gb|AFP65260.1| DNA-directed RNA polymerase I chain-like protein [Chroomonas
mesostigmatica CCMP1168]
Length = 1512
Score = 272 bits (696), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 202/636 (31%), Positives = 306/636 (48%), Gaps = 64/636 (10%)
Query: 28 VPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCILNTEIRTLPPTIWKPM 87
+P + + GLIQD++I+ L+ +DTFL+ +LV A+ + P I KP
Sbjct: 630 IPTHNTLMRGLIQDNIITSVNLTQKDTFLSETILFHLVGSAIKDKENSKFSFCPAIIKPK 689
Query: 88 PLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHG 147
LWTGKQ S V+ K ++ + K FG +T + IR G
Sbjct: 690 ILWTGKQAFSIVLKLFLKKKWLLNLESRTK---ITKIFFGKD---------ETKILIRKG 737
Query: 148 ELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDI 206
ELL G++D Q G ++GL HA + +G LLS L + V+ QR+ GF+ G+ D+
Sbjct: 738 ELLRGVIDASQIGRNRHGLFHAFDEIYGNFVTDKLLSVLCRSL-VFFQRIQGFSSGLEDL 796
Query: 207 LVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ-LQEAYASIPQFRAQID 265
++R++ D+ R KI K +++ L + I + Y I F
Sbjct: 797 ILRKKIDKNRIKIFRKEKKISHLILKKTLSNNGICYKKFIEKNFFDQNYLKIISFLFTYR 856
Query: 266 RQY-------KSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCL 318
+ + K++ +K+++N + + G+ + F N M +GAKGS +N QI
Sbjct: 857 KLFEFFIIKSKNIFNKISSNTIESTVLGGMEKKFFVNGFLQMTITGAKGSILNVFQICSN 916
Query: 319 LGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGL 378
LGQ ELE + + G+TLP F P++ S A +V RF TGI EFFFHC+AGREGL
Sbjct: 917 LGQTELEEQFIPLGYGGKTLPVFPPFDFSYLANAYVFRRFSTGIGQSEFFFHCIAGREGL 976
Query: 379 IDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDK 438
+DT++KTS+SGY+QR L+KHLE L ++ D++VR D S+ Q Y +GL + D
Sbjct: 977 LDTSIKTSQSGYVQRSLIKHLESLKLNQDLSVRFGDGSVAQFHYFHNGLSSCAFDF--DC 1034
Query: 439 QFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLE 498
+ N K I K I NL L L FS +
Sbjct: 1035 FLPWFFQNFKRINRKKNITNLNSVFQLDSINKLKKKKTKKNSIKNFFSKNMV-------- 1086
Query: 499 QWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDK 558
+ L DK KK +IST N ++ + K + +K
Sbjct: 1087 --FSLGDKNLKK-----------IISTI-----------NKSNLLRKNRYSIWNFFFQEK 1122
Query: 559 FYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREI 618
+ ++ KN LA PGE +G++ + S+GEP TQMTLNTFHFAG+ GIPRL+EI
Sbjct: 1123 NFIKLYRKN---LAQPGEPLGIITSHSLGEPCTQMTLNTFHFAGKLVSKNNSGIPRLKEI 1179
Query: 619 LMMATKAIKTPSMEIPFLPDMP-----KLEKKANRL 649
+++A++ P+M + F ++ EK+ R+
Sbjct: 1180 VLIASQQPSYPTMSVFFKKNLSFNVYFSFEKRVKRI 1215
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 78/136 (57%), Gaps = 1/136 (0%)
Query: 871 TDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 930
T+GIN F + L+D K++ N+I M + YGIEA ++ E+ +F + I V+
Sbjct: 1373 TEGINFYFFWKNSDLVDCEKIFTNNIFSMTTIYGIEAGRETLVYELSTIFKMQTISVNSH 1432
Query: 931 HLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSAR 990
H+ L++DYM G Y +++R GI + QK+T+E +E + +S+ + L + S+
Sbjct: 1433 HIDLLSDYMMRLGFYRSLSRKGIT-EENIFQKITYETAIEFLINSSINQTSEFLTSTSSL 1491
Query: 991 VMLGQECRQGTGLFQL 1006
+ LG+ CR GTG F +
Sbjct: 1492 ISLGKICRLGTGNFDI 1507
>gi|150951372|ref|XP_001387687.2| DNA-directed RNA polymerase III subunit C1 (RPO31) [Scheffersomyces
stipitis CBS 6054]
gi|149388539|gb|EAZ63664.2| DNA-directed RNA polymerase III subunit C1 (RPO31) [Scheffersomyces
stipitis CBS 6054]
Length = 1448
Score = 272 bits (696), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 207/644 (32%), Positives = 312/644 (48%), Gaps = 64/644 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + L PK G P+ QD + +S +D+F RA + L+ +
Sbjct: 526 RAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRASLVQLL-SMMSDA 584
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKK--QFGSTQ 130
+ + PP+I+KP+ LWTGKQV S ++I K V+I LD K F +
Sbjct: 585 DVQFDIPPPSIFKPVMLWTGKQVFS-LLIKPNKKSNVVIN--------LDAKCKTFIPPE 635
Query: 131 YGLVHAVW--DTHVTIRHGELLSGILDKKQFG-STQYGLVHAVWDTHGAEHAISLLSCLA 187
GL + D V IR ++L+G++DK G ++ + + + +G E A + ++ +A
Sbjct: 636 KGLPSEMSPNDGFVIIRGSQVLAGVMDKSLLGDGKKHSVFYTILRDYGPEEAATAMNRMA 695
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIIS 247
KL +L GF++G+ D+ + RK+ ++ +A E L+T P
Sbjct: 696 KLCARFLGNRGFSIGINDVTPGFDLRRKKELMVEQAYLKCDELIDLYHRGKLETQPGCNE 755
Query: 248 SQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPE--GLIEPFPANNLQFMVESGA 305
Q EA S LL KV + +VC+ E L P M G+
Sbjct: 756 EQTLEAKIS-------------GLLSKVREEVGEVCIRELDSLNAPL------IMATCGS 796
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGST+N Q+ ++GQ + G R R+LP F +P++ GFV F +G+ P
Sbjct: 797 KGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFTKNSKTPQSKGFVRNSFYSGLTPP 856
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EF FH ++GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR+S ++Q YG D
Sbjct: 857 EFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSQYDSTVRNSSNGIVQFTYGGD 916
Query: 426 GLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALL------------LLL 473
GLD Y + + +W ++ + N+ K L ++ L+
Sbjct: 917 GLD----PYDMEGDARPVNFKRQWDHAFNITFNIKDKSLLPYEIIDLVNSILEPLEDRLI 972
Query: 474 TFKSSGK--PNFIFSPHRTKFTMDLLEQWYQ-LDDKARKKYRKKFKACPQPLISTF--QP 528
+ + GK P F D +YQ L D K + + + TF +P
Sbjct: 973 RYDNVGKILPEEDFDKIEYIDQNDAERAYYQSLRDFVTDKAEQLAQIREHRGLRTFFTRP 1032
Query: 529 DAH---FGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQS 585
D+ F S E+ ++V + K + ++KF + YK + PG VG + AQS
Sbjct: 1033 DSEDILFDS-DESAVNAVDQLLK--ISSKTIEKFLEQSLYKYSKAKVEPGTAVGAIGAQS 1089
Query: 586 IGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
IGEP TQMTL TFHFAG MNVTLG+PR++EI+ A+K I TP
Sbjct: 1090 IGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII-NASKTISTP 1132
Score = 73.6 bits (179), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 101/223 (45%), Gaps = 26/223 (11%)
Query: 798 RMSEREEDDNTSNIGE---RFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLF 854
R S+ + N SN E R + R N+ +K + N V D K +
Sbjct: 1230 RESKADALKNGSNANELFFRMQQLRRSLPNICIKGLPNIMRAVINIRDDGKKEL------ 1283
Query: 855 LPSNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIR 914
L E K ++ TDGI V + H+L++ ++ GIEAA II+
Sbjct: 1284 ----LVEGYGLKDVMSTDGI-VGTKTTTNHVLEVFEVL-----------GIEAARASIIK 1327
Query: 915 EVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIR 973
E+ + +G+ VDPRH+ L+ D MT+ G + + R G+ ++ S +Q +FE + +
Sbjct: 1328 EIDYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLF 1387
Query: 974 QASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNREKKKKKV 1016
A+ + D + S ++LGQ GTG F+L KKV
Sbjct: 1388 DAAFFMKSDKIEGVSECIILGQSMSIGTGSFKLVKSSNYDKKV 1430
>gi|365984467|ref|XP_003669066.1| hypothetical protein NDAI_0C01620 [Naumovozyma dairenensis CBS 421]
gi|343767834|emb|CCD23823.1| hypothetical protein NDAI_0C01620 [Naumovozyma dairenensis CBS 421]
Length = 1460
Score = 271 bits (694), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 208/661 (31%), Positives = 309/661 (46%), Gaps = 93/661 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + L PK G P+ QD + +S +D+F RA L+ +C
Sbjct: 528 RAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRATLTQLL-SMMCDA 586
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLS---------TVIINLTPKDKVIIRHGELLSGILDK 123
N + PP I KP LWTGKQ+ S V+INL K+KV I
Sbjct: 587 NLQFDIPPPAIMKPHYLWTGKQLFSLLIKPNKDSPVVINLDAKNKVYIPPK--------- 637
Query: 124 KQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFG-STQYGLVHAVWDTHGAEHAISL 182
+ Y + D +V IR ++LSG++DK G ++ + + + +G + A +
Sbjct: 638 ----TKAYPNEMSRNDGYVIIRGSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAATA 693
Query: 183 LSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNAL-----GL 237
++ +AKL +L GF++G+ D+ + +K+ +++ A A C+ L
Sbjct: 694 MNRMAKLCARFLGNRGFSIGISDVTPADDLKQKKEELVEIAY-----AKCDELIDQFNKG 748
Query: 238 PLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPE--GLIEPFPAN 295
L+T P Q EA + LL KV + VC+ E L P
Sbjct: 749 KLETQPGCNEEQTLEA-------------KIGGLLSKVREEVGDVCINELDNLNAPL--- 792
Query: 296 NLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVD 355
M G+KGST+N Q+ ++GQ + G R R+LP F +P++ GFV
Sbjct: 793 ---IMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFQKNSKTPQSKGFVR 849
Query: 356 GRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDL 415
F +G+ P EF FH ++GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR S
Sbjct: 850 NSFFSGLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTSSN 909
Query: 416 SLIQVLYGEDGLDVTK-----------RQYLTDKQFSFLEDNIKWICSYKVI--LNLLKK 462
++Q YG DGLD + R + +F D + Y+++ N + K
Sbjct: 910 GIVQFTYGGDGLDPMEMEGNAKPVNFNRSWDHATNITFSPDQ-HGLLPYQIMETTNAILK 968
Query: 463 HPLSLALLLLLTFKSSGK--PNFIFSPHRTKFTMDLLEQWYQ-----LDDKAR-----KK 510
PL L+ + + G+ PN + D +Y+ +D+KA+ +K
Sbjct: 969 -PLEDR---LIRYDNLGEIVPNEDSTKAEYVDQFDAERDFYKSLRDYMDEKAKVLGSVRK 1024
Query: 511 YRKKFKACPQPL--ISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNL 568
R +P + PD D + K T+ V KF ++ YK
Sbjct: 1025 SRGMLPMVDEPAEELKKMNPDEQVPETIRYSVDQLYKITE-----DLVKKFLEIALYKYR 1079
Query: 569 LSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKT 628
+ PG VG + AQSIGEP TQMTL TFHFAG MNVTLG+PR++EI+ A+K I T
Sbjct: 1080 KARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII-NASKVIST 1138
Query: 629 P 629
P
Sbjct: 1139 P 1139
Score = 70.5 bits (171), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 76/142 (53%), Gaps = 13/142 (9%)
Query: 866 KHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 925
+ ++ TDG+ + + H+L++N + GIEAA I+ E+ + +G+
Sbjct: 1301 RDVMCTDGV-IGMKTTTNHILEVN-----------TVLGIEAARSSIVGEIDYTMSNHGM 1348
Query: 926 EVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSL 984
VDPRH+ L+ D MT+ G + + R G+ ++ S +Q +FE + + A+ ++D++
Sbjct: 1349 SVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAV 1408
Query: 985 RAPSARVMLGQECRQGTGLFQL 1006
S ++LGQ GTG F++
Sbjct: 1409 EGVSECIILGQTMSIGTGSFKV 1430
>gi|358060144|dbj|GAA94203.1| hypothetical protein E5Q_00851 [Mixia osmundae IAM 14324]
Length = 1436
Score = 271 bits (694), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 203/668 (30%), Positives = 319/668 (47%), Gaps = 58/668 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+ EA+ LM++ + P++G P+ QD + LS RD FL RAE + Q LC L
Sbjct: 540 RTEAAHLMSIKQNLVTPRNGEPIIAATQDFITGAFLLSRRDKFLNRAE----IGQILCYL 595
Query: 73 NT---EIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGST 129
++ PPTI +P LWTGKQV S V++ + + + + L +
Sbjct: 596 TDAEGDLELPPPTILRPKQLWTGKQVFS-VLMRPSSRSSICVN----LEAKCRTFEAPPA 650
Query: 130 QYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVW-DTHGAEHAISLLSCLAK 188
Y + D ++ I + ++ G LDK G + V V +GA+ A ++ L+K
Sbjct: 651 GYAPDMSPNDGYLVIENSVIMCGALDKATVGDGKKNSVFGVLLRDYGADAAAQAMNRLSK 710
Query: 189 LFTVYLQRVGFTLGVRDIL----VRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPE 244
L +L GF++G+ D+ +R E+D + K ++ L T+AA L D
Sbjct: 711 LCARWLTNQGFSIGISDVTPGDKLRDEKDDRIRKAYEESNLLITQAAHGKLENAAGCD-- 768
Query: 245 IISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQF-MVES 303
Q Q ASI +L +V + + ++C+ E NN M
Sbjct: 769 ----QDQTLEASI-----------SGVLSRVRDKVGEICMTE-----LSRNNAPLIMAIC 808
Query: 304 GAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQ 363
G+KGS +N Q+ +GQ GKR A R+LP +L +P + GFV F +G+
Sbjct: 809 GSKGSKINVCQMVACVGQQITNGKRVADGFINRSLPHYLKKSKNPPSKGFVRNSFYSGLT 868
Query: 364 PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYG 423
EFFFH ++GREGL+DTAVKT+ +GY+QR L+K LE L+ YD++VR S S++Q +YG
Sbjct: 869 ATEFFFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLSTRYDLSVRSSTGSIVQFMYG 928
Query: 424 EDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNF 483
DGLD Y+ + S +E W + + PL +L LT + F
Sbjct: 929 NDGLDPA---YM-EGDGSPVEFVRTWQHIRATVPHTKTSKPLMPYAILELTDRLLATDRF 984
Query: 484 IFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQP------DAHFGSISE 537
+ H + F + + ++R+ + +I + + ++
Sbjct: 985 DMTRH-SDFPAQIKAFVVKHIVAPAARFRRAYG-----MIEALEKHEEWDDETDLTGLAG 1038
Query: 538 NLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNT 597
A VV K +T + +F + + K S+ PG VG + AQSIGEP TQMTL T
Sbjct: 1039 PKAVHVVDQ-KTKTTEDQIARFLLLCWEKYARSMVEPGTAVGAIGAQSIGEPGTQMTLKT 1097
Query: 598 FHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRIT 657
FHFAG MNVTLG+PR++EI+ A+K I TP + L D+ + E A + + +
Sbjct: 1098 FHFAGVASMNVTLGVPRIKEII-NASKVISTPIITAELLSDLAQSEASARVIKARIEKTY 1156
Query: 658 MADVLEKV 665
+ ++ ++
Sbjct: 1157 LGEIASQM 1164
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 82/185 (44%), Gaps = 25/185 (13%)
Query: 813 ERFKIEFRDSTNVFVKDV--VNQHNIVHKYSYDKKNHMWCKLLFLPSNLFEEKESKHLLK 870
+R R NV VK V ++ I K K+ H+ L E + ++
Sbjct: 1241 DRLNTLCRLLPNVVVKGVGACSRAVIQVKQGSSKEKHL----------LVEGNGLREVMT 1290
Query: 871 TDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 930
TDG+ D ++ N I + GIEAA + II E+ +G+ VDPR
Sbjct: 1291 TDGV------------DGRRVTSNHIMEVVKVLGIEAARQTIINEIGGTMGAHGLSVDPR 1338
Query: 931 HLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSA 989
HL L+ D MT G + + R G+ +L S + +FE + + A++ R+D + S
Sbjct: 1339 HLGLLGDVMTCKGEVLGITRFGVAKLKDSTLMLASFEKTTDHLFDAAVYSRQDDIDGISE 1398
Query: 990 RVMLG 994
+++G
Sbjct: 1399 SIIMG 1403
>gi|157867323|ref|XP_001682216.1| putative DNA-directed rna polymerase I largest subunit [Leishmania
major strain Friedlin]
gi|68125668|emb|CAJ04022.1| putative DNA-directed rna polymerase I largest subunit [Leishmania
major strain Friedlin]
Length = 1809
Score = 271 bits (693), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 165/459 (35%), Positives = 241/459 (52%), Gaps = 60/459 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA---- 68
KAE LM+ + YLVP G P+ G IQDHV++G L+LRD FL ++ VY
Sbjct: 675 KAELECLMDANLNYLVPTSGKPIRGFIQDHVVAGVLLTLRDNFLPHHTFVQFVYNGIAPY 734
Query: 69 -------LCILNTEIRTLP-PTIWKPMPLWTGKQVLSTVIINLT---------PKDKVII 111
L L T +P P + KP PLWTGKQ++S ++ +T P+ +
Sbjct: 735 MQKQGKPLSALATLTELIPVPAVLKPRPLWTGKQLISVIVHYVTGVVESRGGAPRSNGVS 794
Query: 112 RHGELL----SGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLV 167
HG L + G + D HV EL++GIL K Q GS+ +V
Sbjct: 795 MHGTSLIQPSTYTTTDPHTGELVTASRKCMEDDHVQFFESELITGILCKNQLGSSNLSVV 854
Query: 168 HAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLG 227
H + + +G L L ++ ++ LQR GF++G+ D+++ QE +RT ++ +
Sbjct: 855 HVIHEIYGPHMVGELFGALGRVLSMSLQREGFSIGMDDMILLQEE--RRTALLRE----- 907
Query: 228 TEAACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEG 287
LD+ P ++P A++ ++ + ++ + +P
Sbjct: 908 -----------LDSAP-----------LNLPDDEARV----MPVIMGMATSLQKEFVPGR 941
Query: 288 LIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVS 347
++ PFP N L M SGAKGS N +Q+S LGQ +G+R M SG+TLP F E
Sbjct: 942 MLRPFPHNQLLTMTMSGAKGSNTNAIQMSLGLGQQLFDGRRVKRMNSGKTLPPFFVAEKR 1001
Query: 348 PRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYD 407
R+ G+ GRF +GI+P E+ FH MAGR+GLIDTAVKTSRSG+LQRCLVK LE L V +D
Sbjct: 1002 ARSLGYAIGRFTSGIRPAEYTFHAMAGRDGLIDTAVKTSRSGHLQRCLVKGLESLVVQWD 1061
Query: 408 MTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDN 446
+VRD++ S+IQ LYG DGLD + L + + ++DN
Sbjct: 1062 HSVRDANGSVIQFLYGGDGLDPMRTSSL--QAWEVVKDN 1098
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 115/260 (44%), Gaps = 21/260 (8%)
Query: 557 DKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLR 616
D ++ + + + + GE VG+LAAQ+ GEPSTQMTLNTFH AG +VT GIPRLR
Sbjct: 1211 DVMTELTTRRRVRAYCDAGEPVGLLAAQAAGEPSTQMTLNTFHSAGSTVTHVTEGIPRLR 1270
Query: 617 EILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPE 676
E+L+ A+ ++ ++ +P E+ +R+ ++ + D + +V ++
Sbjct: 1271 ELLIYAS--VQKVAIVVPVEKATEVDEEAISRILQAGVATRLTDCMARVPAA----VTAG 1324
Query: 677 PHMNYQMKFCFIPAHMYRDKTSVKPSKIIDH--FERKFLKELEVAIAKRAAQGLKNM--N 732
+ P + YR S + +++ F + L + + A+ A+ L++
Sbjct: 1325 ADSGAAARAQTTPGYHYRVTRSAEGTQVTVALLFSKTLLMQKQHAMCMSTAEHLQSFTQT 1384
Query: 733 IEQSRDQMEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEE 792
++ Q+ + + EGAG L + D+ A + E+D
Sbjct: 1385 LKNFARQVVTALRGRSKDEREGAGGPLRGTTQDPSSQMDDGTAAAGGGMSDNEDD----- 1439
Query: 793 PEDEERMSEREEDDNTSNIG 812
M ER NT +G
Sbjct: 1440 ------MDERSTQMNTPALG 1453
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 3/122 (2%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+ L K DI M +++G+E+ + E++ +F Y VD HL+L+AD TH G +
Sbjct: 1674 IKLQKARSTDIRDMCTSFGVESGYTALFDELEKLFKRY--SVDYHHLTLIADAATHRGVW 1731
Query: 946 VAMNRNG-IRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
N G I + S + +MTF + A +G D L + S+ +M+G+ R GT L
Sbjct: 1732 ENYNFTGVISHSASPLFQMTFASSKRFLHTALTRGIGDELNSISSAIMVGERPRVGTALV 1791
Query: 1005 QL 1006
++
Sbjct: 1792 KV 1793
>gi|324500904|gb|ADY40409.1| DNA-directed RNA polymerase III subunit RPC1 [Ascaris suum]
Length = 1405
Score = 271 bits (692), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 205/673 (30%), Positives = 319/673 (47%), Gaps = 70/673 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAE---YMNLVYQAL 69
+AEAS LM V S + P+ G PL IQD + G ++ +D+F R+E + + + A
Sbjct: 513 RAEASLLMGVKSNLITPRSGEPLIAAIQDFITGGYLMTHKDSFFPRSEVHRFASAIIDAN 572
Query: 70 CILNTEIRTLPPTIWKPMPLWTGKQVLSTVI---------INLTPKDKVIIRHGELLSGI 120
+ IR PP I KP+ LWTGKQ++ +I +NLT K+K + E
Sbjct: 573 AKKQSRIRIPPPAIRKPVELWTGKQLVELIIRPDVDSKVSLNLTTKNKSYTGNEEF---- 628
Query: 121 LDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHA 179
V D++V IR+ L+ G+LDK GS ++ + + + G + A
Sbjct: 629 ---------------CVKDSYVIIRNSVLICGVLDKALLGSGSKTNIFYILLRDFGEDAA 673
Query: 180 ISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPL 239
+ + LA++ VYL GF++G+ D+ + +++ ++ + E + L
Sbjct: 674 VDAMWRLARMAPVYLTNRGFSIGIGDVRPGEGLLKEKAALLAAGYKKCDEYITSLKEGHL 733
Query: 240 DTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQF 299
P + EA I ++ L + ++ Q CL P
Sbjct: 734 KAQPGCTEHETLEAL---------ILKE----LSAIRDHAGQACLRNLSRHNAPLT---- 776
Query: 300 MVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFM 359
M G+KGS +N Q+ +GQ + G RP R+LP F + +P A GFV+ F
Sbjct: 777 MAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEDRSLPHFERRQKTPAAKGFVENSFY 836
Query: 360 TGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQ 419
+G+ P EFFFH MAGREGL+DTAVKT+ +GY+QR LVK LE L V+YD TVR S +I+
Sbjct: 837 SGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKCLEDLCVNYDGTVRSSVGDIIE 896
Query: 420 VLYGEDGLDVTKRQYLTDK--QFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKS 477
+GEDGLD + K F + ++++ + + + + LL+ T KS
Sbjct: 897 FTFGEDGLDPALMEAKDGKVVDFKHVLEHVRNTTPH-IWEEGSELETEEMRLLITTTIKS 955
Query: 478 S-GKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSIS 536
GK + F +F ++ + + KY K C Q F A
Sbjct: 956 KLGKEHTRFREQLEEFMLNYIASTH--------KYYTLPKTCQQ---HEFSSRAVCAKCD 1004
Query: 537 ENLADSVVKYTKGRTDA---SHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQM 593
++ S + + R+ S F ++ K ++ PG VG +AA SIGEPSTQM
Sbjct: 1005 TCISRSRFRQIQIRSHCLSHSQAVAFIELCNDKLKRAVTEPGTAVGAIAATSIGEPSTQM 1064
Query: 594 TLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSM 653
TL TFHFAG MN+T G+PR++EI+ K I TP + + K E A R+ +
Sbjct: 1065 TLKTFHFAGVASMNITQGVPRIKEII-NGVKLISTPIITAALSNE--KDESLARRVKARI 1121
Query: 654 TRITMADVLEKVK 666
+ T+ ++ E ++
Sbjct: 1122 EKTTLGEICEYIE 1134
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 72/135 (53%), Gaps = 1/135 (0%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D + Y N+ +A GIEAA II E+ + +GI +D RH+ L+AD MT+ G
Sbjct: 1258 IDGRRTYFNNALTVAEVLGIEAARTSIISEILSTMESHGIGLDQRHVMLLADVMTYRGEV 1317
Query: 946 VAMNRNG-IRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
+ + RNG +++ S + +FE + + +A+ +ED + S +++G GTGLF
Sbjct: 1318 LGITRNGLVKMKESVLLLASFEKTTDHLYEAAFFSQEDKIAGVSECIIMGTPMTIGTGLF 1377
Query: 1005 QLRNREKKKKKVEAK 1019
++ K V+ K
Sbjct: 1378 KVLYNHGKPPNVQPK 1392
>gi|426198021|gb|EKV47947.1| hypothetical protein AGABI2DRAFT_202225 [Agaricus bisporus var.
bisporus H97]
Length = 1402
Score = 271 bits (692), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 207/679 (30%), Positives = 324/679 (47%), Gaps = 56/679 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM+V + P++G P+ IQD + + LS +DTF R ++ Q C
Sbjct: 507 RAEALELMSVKHNLVTPRNGDPVIAAIQDFITASYLLSRKDTFFDRRQFT----QICCYF 562
Query: 73 ---NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTP-KDKVIIRHGELLSGILDKKQFGS 128
N +I PPTIWKP LWTGKQV + + + P K+ ++ + E ++ + +
Sbjct: 563 GDANMQIDIPPPTIWKPARLWTGKQVFNVL---MRPNKNSEVLVNVECKCNKWEEAKPEN 619
Query: 129 TQYGLVHA----VWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLL 183
++ A D + + + E++ G++DK GS + + + +G A + +
Sbjct: 620 YPSRMIPANDLSPNDGWLVVVNSEIMCGVMDKATVGSGKKKSIFGVILRDYGPHEAAAAM 679
Query: 184 SCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDP 243
+ LAKL YL GF+LG+ D++ + ++ ++ KA + A L+ P
Sbjct: 680 NRLAKLCARYLANYGFSLGINDVIPGPQLKARKESLVEKAYADCQDLIALAKKGKLENKP 739
Query: 244 EIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVES 303
Q EA S S+L KV + Q+C+ E P M
Sbjct: 740 GCNQEQTLEALIS-------------SVLSKVREAVGQICMKELSRHNAPL----IMATC 782
Query: 304 GAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQ 363
G+KGS +N Q+ +GQ + G R R+LP F P + GFV F +G+
Sbjct: 783 GSKGSVINVSQMVACVGQQIIAGHRVPNGFQDRSLPHFPKKSKEPPSKGFVRNSFYSGLV 842
Query: 364 PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYG 423
EF FH ++GREGL+DTAVKT+ +GY+QR L+K LE LT YD++VR+S ++Q YG
Sbjct: 843 ATEFLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLTTQYDLSVRNSTGGVVQFRYG 902
Query: 424 EDGLDVTKRQYLTDKQFSFLEDNIKWICSY--KVILNLLKKHPLSLALLLLLTFKSSGKP 481
+DGLD + D Q LE + + + + +LL P +L LT ++ P
Sbjct: 903 DDGLDPACLE--GDAQPIDLERTWRHVSASAGRAGRSLL---PFE---VLELTDQTLATP 954
Query: 482 NFI--FSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENL 539
F+ F+ D + + ++ R F+A + D G+ +L
Sbjct: 955 RFVNEFTQTYLDILRDFIHNNVARNIAEHRQSRGMFEALERDTEWDADTDLSMGATDSDL 1014
Query: 540 ADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFH 599
S+V K + + +F + + K + PG VG + AQSIGEP TQMTL TFH
Sbjct: 1015 --SIVD-NKAKVTEEQLRRFLHVCWAKYAKARIEPGSTVGAVGAQSIGEPGTQMTLKTFH 1071
Query: 600 FAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITM- 658
FAG MNVTLG+PR++EI+ A KAI TP + + + + + R+ K T+
Sbjct: 1072 FAGVASMNVTLGVPRIKEII-NAAKAISTPIISCKLV---TRSSEASARIVKGRLEKTLL 1127
Query: 659 ---ADVLEKVKIKEWLEIS 674
A VLE+ E++ I
Sbjct: 1128 GDVASVLEEAWAPEYVYIC 1146
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N + +A GIEAA R II E++ + + +DPRH+ L+ D MT+ G + + R G+
Sbjct: 1269 NHVIEVAQVLGIEAARRTIINEIQYTMKSHDMIIDPRHVMLLGDVMTYKGEVLGITRFGV 1328
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLG 994
++ S + +FE + + AS G+ DS+ S +++G
Sbjct: 1329 AKMKDSVLMLASFEKTTDHLFDASAFGKTDSISGVSESIIMG 1370
>gi|409075371|gb|EKM75752.1| hypothetical protein AGABI1DRAFT_79519 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1402
Score = 270 bits (691), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 208/678 (30%), Positives = 324/678 (47%), Gaps = 54/678 (7%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM+V + P++G P+ IQD + + LS +DTF R ++ Q C
Sbjct: 507 RAEALELMSVKHNLVTPRNGDPVIAAIQDFITASYLLSRKDTFFDRRQFT----QICCYF 562
Query: 73 ---NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGST 129
N +I PPTIWKP LWTGKQV + V++ +V++ + E ++ + +
Sbjct: 563 GDANMQIDIPPPTIWKPARLWTGKQVFN-VLMRPNKISEVLV-NVECKCNKWEEAKPENY 620
Query: 130 QYGLVHA----VWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLS 184
++ A D + + + E++ G++DK GS + + + +G A + ++
Sbjct: 621 PSRMIPANDLSPNDGWLVVVNSEIMCGVMDKATVGSGKKKSIFGVILRDYGPHEAAAAMN 680
Query: 185 CLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPE 244
LAKL YL GF+LG+ D++ + ++ ++ KA + A L+ P
Sbjct: 681 RLAKLCARYLANYGFSLGINDVIPGPQLKARKESLVEKAYADCQDLIALAKKGKLENKPG 740
Query: 245 IISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESG 304
Q EA S S+L KV + Q+C+ E P M G
Sbjct: 741 CNQEQTLEALIS-------------SVLSKVREAVGQICMKELSRHNAPL----IMATCG 783
Query: 305 AKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQP 364
+KGS +N Q+ +GQ + G R R+LP F P + GFV F +G+
Sbjct: 784 SKGSVINVSQMVACVGQQIIAGHRVPNGFQDRSLPHFPKKSKEPPSKGFVRNSFYSGLVA 843
Query: 365 QEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGE 424
EF FH ++GREGL+DTAVKT+ +GY+QR L+K LE LT YD++VR+S ++Q YG+
Sbjct: 844 TEFLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLTTQYDLSVRNSTGGVVQFRYGD 903
Query: 425 DGLDVTKRQYLTDKQFSFLEDNIKWICSY--KVILNLLKKHPLSLALLLLLTFKSSGKPN 482
DGLD + D Q LE + + + + +LL P +L LT ++ P
Sbjct: 904 DGLDPACLE--GDAQPIDLERTWRHVSASAGRAGRSLL---PFE---VLELTDQTLATPR 955
Query: 483 FI--FSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLA 540
F+ F+ D + + ++ R F+A + D G+ +L
Sbjct: 956 FVNEFTQTYLDILRDFIHNNVARNIAEHRQSRGMFEALERDTEWDADTDLSMGATDSDL- 1014
Query: 541 DSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHF 600
S+V K + + KF + + K + PG VG + AQSIGEP TQMTL TFHF
Sbjct: 1015 -SIVD-NKAKVTEEQLRKFLHVCWAKYAKARIEPGSTVGAVGAQSIGEPGTQMTLKTFHF 1072
Query: 601 AGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITM-- 658
AG MNVTLG+PR++EI+ A KAI TP + + + + + R+ K T+
Sbjct: 1073 AGVASMNVTLGVPRIKEII-NAAKAISTPIISCKLV---TRSSEASARIVKGRLEKTLLG 1128
Query: 659 --ADVLEKVKIKEWLEIS 674
A VLE+ E++ I
Sbjct: 1129 DVASVLEEAWAPEYVYIC 1146
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N + +A GIEAA R II E++ + + +DPRH+ L+ D MT+ G + + R G+
Sbjct: 1269 NHVIEVAQVLGIEAARRTIINEIQYTMKSHDMIIDPRHVMLLGDVMTYKGEVLGITRFGV 1328
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLG 994
++ S + +FE + + AS G+ DS+ S +++G
Sbjct: 1329 AKMKDSVLMLASFEKTTDHLFDASAFGKTDSISGVSESIIMG 1370
>gi|241955144|ref|XP_002420293.1| DNA-directed RNA polymerase III subunit, putative [Candida
dubliniensis CD36]
gi|223643634|emb|CAX42517.1| DNA-directed RNA polymerase III subunit, putative [Candida
dubliniensis CD36]
Length = 1448
Score = 270 bits (689), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 211/686 (30%), Positives = 329/686 (47%), Gaps = 92/686 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + L PK G P+ QD + +S +D+F RA + L+ +
Sbjct: 524 RAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRATLVQLL-SMMSDA 582
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQ--FGSTQ 130
+ + PPTI+KP+ LWTGKQV S ++I K V+I LD K F +
Sbjct: 583 DIQFDIPPPTIFKPVMLWTGKQVFS-LLIKPNKKSNVVIN--------LDAKNKTFHPPK 633
Query: 131 YGLVHAVW--DTHVTIRHGELLSGILDKKQFG-STQYGLVHAVWDTHGAEHAISLLSCLA 187
GL + + D V IR ++LSG++DK G ++ + + + +G E A + ++ +A
Sbjct: 634 KGLPNEMSPNDGFVVIRGSKILSGLMDKSTLGDGKKHSVFYTILRDYGPEEAAAAMNRMA 693
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNAL-----GLPLDTD 242
KL +L GF++G+ D+ E +K+ ++ +A C+ L L+T
Sbjct: 694 KLCARFLGNRGFSIGINDVTPADELKQKKELMVEQAY-----LKCDQLIDLYNRGKLETQ 748
Query: 243 PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPE--GLIEPFPANNLQFM 300
P Q EA + LL KV + VC+ E L P M
Sbjct: 749 PGCNEEQTLEA-------------KIGGLLSKVREEVGDVCIRELDSLNAPL------IM 789
Query: 301 VESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMT 360
G+KGST+N Q+ ++GQ + G R R+LP F +P++ GFV F +
Sbjct: 790 ATCGSKGSTLNVSQMVAVVGQQIISGHRVPDGFQDRSLPHFTKNSKTPQSKGFVRNSFFS 849
Query: 361 GIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQV 420
G+ P EF FH ++GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR+S ++Q
Sbjct: 850 GLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSQYDNTVRNSSNGIVQF 909
Query: 421 LYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGK 480
YG DGLD Y + + N +W +Y + N+ + LL ++
Sbjct: 910 TYGGDGLD----PYDMEGDAKPVNFNRQWDHAYNLTYNVDD--------VSLLPYQIEEL 957
Query: 481 PNFIFSPHRTKFT-MDLLE------------QWYQLDDKARKKYR--KKFKACPQPLIST 525
+ I +P K D L ++ +D R Y+ + F ++
Sbjct: 958 VDSILAPLENKLIRYDNLGNALNDKEKEEKIEYIDQNDGERDFYKSIRDFITKKSTRLAR 1017
Query: 526 FQPD----AHFGSISEN---------LADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLA 572
+ + A+F + +E+ ++++ + +K ++A V F + YK +
Sbjct: 1018 LREERGLKAYFTAPNEDEIVMDEDRVTSNAIDQLSKISSNA--VKTFLEQCLYKYSRARV 1075
Query: 573 NPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSME 632
PG VG + AQSIGEP TQMTL TFHFAG MNVTLG+PR++EI+ A+K I TP +
Sbjct: 1076 EPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII-NASKVISTPIIN 1134
Query: 633 IPFLPDMPKLEKKANRLAKSMTRITM 658
+ D ++ A R+AK T+
Sbjct: 1135 AVLVNDDDEI---AARVAKGRIEKTL 1157
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 81/155 (52%), Gaps = 13/155 (8%)
Query: 866 KHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 925
K ++ T+GI V + H+L++N++ GIEAA II+E+ + +G+
Sbjct: 1291 KDVMNTEGI-VGTKTTTNHVLEVNQIL-----------GIEAARGSIIKEIDYTMSNHGM 1338
Query: 926 EVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSL 984
VDPRH+ L+ D MT+ G + + R G+ ++ S +Q +FE + + A+ + D +
Sbjct: 1339 SVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFFMKNDKI 1398
Query: 985 RAPSARVMLGQECRQGTGLFQLRNREKKKKKVEAK 1019
S ++LGQ GTG F+L +KKV K
Sbjct: 1399 EGVSECIILGQTMSIGTGSFKLVKSSNYEKKVLKK 1433
>gi|398013269|ref|XP_003859827.1| DNA-directed rna polymerase I largest subunit, putative [Leishmania
donovani]
gi|322498044|emb|CBZ33120.1| DNA-directed rna polymerase I largest subunit, putative [Leishmania
donovani]
Length = 1810
Score = 269 bits (688), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 165/459 (35%), Positives = 240/459 (52%), Gaps = 60/459 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA---- 68
KAE LM+ + YLVP G P+ G IQDHV++G L+LRD FL ++ VY
Sbjct: 675 KAELECLMDANLNYLVPTSGKPIRGFIQDHVVAGVLLTLRDNFLPHHTFVQFVYNGIAPY 734
Query: 69 -------LCILNTEIRTLP-PTIWKPMPLWTGKQVLSTVIINLT---------PKDKVII 111
L T +P P + KP PLWTGKQ++S ++ +T P+ +
Sbjct: 735 MQKQGKPLSAHATLTGLIPMPAVLKPRPLWTGKQLISVIVHYVTGVVESRGGAPRSNGVS 794
Query: 112 RHGELL----SGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLV 167
HG L + G + D HV EL++GIL K Q GS+ +V
Sbjct: 795 MHGTSLIQPSTYTTTDPHTGELVTASRKCMEDDHVQFFESELITGILCKNQLGSSNLSVV 854
Query: 168 HAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLG 227
H + + +G L L ++ ++ LQR GF++G+ D+++ QE +RT ++ +
Sbjct: 855 HVIHEIYGPHMVGELFGALGRVLSMSLQREGFSIGMDDMMLLQEE--RRTALLRE----- 907
Query: 228 TEAACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEG 287
LD+ P S+P A++ ++ + ++ + +P
Sbjct: 908 -----------LDSAP-----------LSLPDDEARV----MPVIMGMATSLQKEFVPGR 941
Query: 288 LIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVS 347
++ PFP N L M SGAKGS N +Q+S LGQ +G+R M SG+TLP F E
Sbjct: 942 MLRPFPYNQLLTMTMSGAKGSNTNAIQMSLGLGQQLFDGRRVKRMNSGKTLPPFFVAEKR 1001
Query: 348 PRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYD 407
R+ G+ GRF +GI+P E+ FH MAGR+GLIDTAVKTSRSG+LQRCLVK LE L V +D
Sbjct: 1002 ARSLGYAIGRFTSGIRPAEYTFHAMAGRDGLIDTAVKTSRSGHLQRCLVKGLESLVVQWD 1061
Query: 408 MTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDN 446
+VRD++ S+IQ LYG DGLD + L + + ++DN
Sbjct: 1062 HSVRDANGSVIQFLYGGDGLDPMRTSSL--QAWEVVKDN 1098
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 114/260 (43%), Gaps = 21/260 (8%)
Query: 557 DKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLR 616
D ++ + + + + GE VG+LAAQ+ GEPSTQMTLNTFH AG +VT GIPRLR
Sbjct: 1211 DVMTELTTRRRVRAYCDAGEPVGLLAAQAAGEPSTQMTLNTFHSAGSTVTHVTEGIPRLR 1270
Query: 617 EILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPE 676
E+L+ A+ ++ ++ +P E +R+ ++ + D + +V ++
Sbjct: 1271 ELLIYAS--VQKVAIVVPVEKATEVDEAAISRILQAGVATRLTDCMARVPAA----VTAS 1324
Query: 677 PHMNYQMKFCFIPAHMYRDKTSVKPSKIIDH--FERKFLKELEVAIAKRAAQGLKNM--N 732
+ P + YR S + +++ F + L + + A+ A+ L++
Sbjct: 1325 ADDGAAARAQTTPGYHYRVTRSAEGTQVTVALLFSKALLMQKQHAMCMSRAEHLQSFTQT 1384
Query: 733 IEQSRDQMEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEE 792
++ Q+ + + EGAG L + D+ A + E+D
Sbjct: 1385 LKNFARQVVTALRGRSKDEREGAGGPLRGTTQDPSSQMDDGGAAAGGGMSDNEDD----- 1439
Query: 793 PEDEERMSEREEDDNTSNIG 812
M ER NT +G
Sbjct: 1440 ------MDERSTQMNTPALG 1453
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+ + K DI M +++G+E+ + + E++ +F Y VD HL+L+AD TH G +
Sbjct: 1675 IKVQKARSTDIRDMCTSFGVESGYKALFDELEKLFKRY--SVDYHHLTLIADAATHRGVW 1732
Query: 946 VAMNRNG-IRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
N G I + S + +MTF + A +G D L + S+ +M+G+ R GT L
Sbjct: 1733 ENYNFTGVISHSASPLFQMTFASSKRFLHTALTRGVGDELNSISSAIMVGERPRVGTALV 1792
Query: 1005 QL 1006
++
Sbjct: 1793 KV 1794
>gi|194894264|ref|XP_001978037.1| GG17910 [Drosophila erecta]
gi|190649686|gb|EDV46964.1| GG17910 [Drosophila erecta]
Length = 1383
Score = 269 bits (688), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 202/639 (31%), Positives = 298/639 (46%), Gaps = 100/639 (15%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM S + PK+G L QD + G L+ ++ FLT+ E M L A C L
Sbjct: 515 RAEALILMGNQSNLVTPKNGEILIAATQDFITGGYLLTQKEVFLTKEEAMQL---AACFL 571
Query: 73 NTEIRTL-----PPTIWKPMPLWTGKQVLSTVI---------INLTPKDKVIIRHGELLS 118
+ E T+ PP + KP LWTGKQ+ S ++ +N+ K + R+ +L S
Sbjct: 572 SNEDSTMHIKLPPPALLKPRRLWTGKQMFSLLMRPNDDSHVRLNMVNKGRNYTRNMDLCS 631
Query: 119 GILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAE 177
D+ + IR+ EL+ G++DK GS T+ + + + G
Sbjct: 632 N-------------------DSWIHIRNSELMCGVMDKATMGSGTKQCIFYLLLRDFGEL 672
Query: 178 HAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL 237
HA + LA++ + +LQ GF+ G+ D+ ++ + + ++N A CN
Sbjct: 673 HATKAMWRLARIASYFLQNRGFSFGISDVTPSKKLLQHKELLLNNGY-----AKCNEY-- 725
Query: 238 PLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNL 297
+D + + LQ P + +S++ + + I + E P N+
Sbjct: 726 -IDM---LKAGTLQCQPGCTP------EETLESVMLRELSAIREQAAKTCFAELHPTNSA 775
Query: 298 QFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGR 357
M SG+KGS +N Q+ +GQ + GKR R LP F + P A GFV
Sbjct: 776 LIMALSGSKGSNINISQMIACVGQQAISGKRVPNGFENRALPHFERHSAIPAARGFVQNS 835
Query: 358 FMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSL 417
F +G+ P EFFFH MAGREGL+DTAVKT+ +GYLQR LVK LE L VHYD TVR++ +
Sbjct: 836 FYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYLQRRLVKCLEDLVVHYDGTVRNAVNEM 895
Query: 418 IQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKS 477
+ +YG DGLD +E K + NL +HP LL S
Sbjct: 896 VDTIYGGDGLDPVS-----------METRNKPVDLVHQYDNLRAQHPQGKDRPLLAEELS 944
Query: 478 SGKPNFI----FSPHRTKFTMDLLEQWYQLDDKA---RKKYRKKFKACPQPLISTFQPDA 530
+ FS R F +D+ + + +K+Y K C Q
Sbjct: 945 EALETLLKTPEFSEARDDFKLDVRNHINTVSKRIGQLQKRYEKYINLCHQ---------- 994
Query: 531 HFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPS 590
I A+ ++++ + ++ Y+ ++ PG VG +AAQSIGEP
Sbjct: 995 ----IECLTAEQLLQFVR------RINDRYNR-------AVTEPGTAVGAIAAQSIGEPG 1037
Query: 591 TQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
TQMTL TFHFAG MN+T G+PR+ EI+ ATK I TP
Sbjct: 1038 TQMTLKTFHFAGVASMNITQGVPRIVEII-NATKTISTP 1075
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 67/122 (54%), Gaps = 1/122 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N+I + T GIEAA +I+ E+ V +G+ VD RH+ L+A MT G + + R+G+
Sbjct: 1242 NNICEIYQTLGIEAARTIIMSEITEVMEGHGMSVDWRHIMLLASQMTARGEVLGITRHGL 1301
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNREKK 1012
++ S +FE + + A+ G+ D++ S R++LG GTG+F+L +
Sbjct: 1302 AKMRESVFNLASFEKTADHLFDAAYYGQTDAINGVSERIILGMPAGIGTGIFKLLQHHED 1361
Query: 1013 KK 1014
K+
Sbjct: 1362 KQ 1363
>gi|146082888|ref|XP_001464622.1| putative DNA-directed rna polymerase I largest subunit [Leishmania
infantum JPCM5]
gi|134068715|emb|CAM67019.1| putative DNA-directed rna polymerase I largest subunit [Leishmania
infantum JPCM5]
Length = 1810
Score = 269 bits (688), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 165/459 (35%), Positives = 240/459 (52%), Gaps = 60/459 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA---- 68
KAE LM+ + YLVP G P+ G IQDHV++G L+LRD FL ++ VY
Sbjct: 675 KAELECLMDANLNYLVPTSGKPIRGFIQDHVVAGVLLTLRDNFLPHHTFVQFVYNGIAPY 734
Query: 69 -------LCILNTEIRTLP-PTIWKPMPLWTGKQVLSTVIINLT---------PKDKVII 111
L T +P P + KP PLWTGKQ++S ++ +T P+ +
Sbjct: 735 MQKQGKPLSAHATLTGLIPMPAVLKPRPLWTGKQLISVIVHYVTGVVESRGGAPRSNGVS 794
Query: 112 RHGELL----SGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLV 167
HG L + G + D HV EL++GIL K Q GS+ +V
Sbjct: 795 MHGTSLIQPSTYTTTDPHTGELVTASRKCMEDDHVQFFESELITGILCKNQLGSSNLSVV 854
Query: 168 HAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLG 227
H + + +G L L ++ ++ LQR GF++G+ D+++ QE +RT ++ +
Sbjct: 855 HVIHEIYGPHMVGELFGALGRVLSMSLQREGFSIGMDDMMLLQEE--RRTALLRE----- 907
Query: 228 TEAACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEG 287
LD+ P S+P A++ ++ + ++ + +P
Sbjct: 908 -----------LDSAP-----------LSLPDDEARV----MPVIMGMATSLQKEFVPGR 941
Query: 288 LIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVS 347
++ PFP N L M SGAKGS N +Q+S LGQ +G+R M SG+TLP F E
Sbjct: 942 MLRPFPYNQLLTMTMSGAKGSNTNAIQMSLGLGQQLFDGRRVKRMNSGKTLPPFFVAEKR 1001
Query: 348 PRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYD 407
R+ G+ GRF +GI+P E+ FH MAGR+GLIDTAVKTSRSG+LQRCLVK LE L V +D
Sbjct: 1002 ARSLGYAIGRFTSGIRPAEYTFHAMAGRDGLIDTAVKTSRSGHLQRCLVKGLESLVVQWD 1061
Query: 408 MTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDN 446
+VRD++ S+IQ LYG DGLD + L + + ++DN
Sbjct: 1062 HSVRDANGSVIQFLYGGDGLDPMRTSSL--QAWEVVKDN 1098
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 113/260 (43%), Gaps = 21/260 (8%)
Query: 557 DKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLR 616
D ++ + + + + GE VG+LAAQ+ GEPSTQMTLNTFH AG +VT GIPRLR
Sbjct: 1211 DVMTELTTRRRVRAYCDAGEPVGLLAAQAAGEPSTQMTLNTFHSAGSTVTHVTEGIPRLR 1270
Query: 617 EILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPE 676
E+L+ A+ ++ ++ +P E+ +R+ ++ + D + +V
Sbjct: 1271 ELLIYAS--VQKVAIVVPVEKATEVDEEAISRILQAGVATRLTDCMARVPAAVTATADDG 1328
Query: 677 PHMNYQMKFCFIPAHMYRDKTSVKPSKIIDH--FERKFLKELEVAIAKRAAQGLKNM--N 732
Q P + YR S + +++ F + L + + A+ A+ L++
Sbjct: 1329 AAARAQT----TPGYHYRVTRSAEGTQVTVALLFSKALLMQKQHAMCMSRAEHLQSFTQT 1384
Query: 733 IEQSRDQMEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEE 792
++ Q+ + + EGAG L + D+ A + E+D
Sbjct: 1385 LKNFARQVVTALRGRSKDEREGAGGPLRGTTQDPSSQMDDGGAAAGGGMSDNEDD----- 1439
Query: 793 PEDEERMSEREEDDNTSNIG 812
M ER NT +G
Sbjct: 1440 ------MDERSTQMNTPALG 1453
Score = 59.7 bits (143), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+ + K DI M +++G+E+ + + E++ +F Y VD HL+L+AD TH G +
Sbjct: 1675 IKVQKARSTDIRDMCTSFGVESGYKALFDELEKLFKRY--SVDYHHLTLIADAATHRGVW 1732
Query: 946 VAMNRNG-IRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
N G I + S + +MTF + A +G D L + S+ +M+G+ R GT L
Sbjct: 1733 ENYNFTGVISHSASPLFQMTFASSKRFLHTALTRGVGDELNSISSAIMVGERPRVGTALV 1792
Query: 1005 QL 1006
++
Sbjct: 1793 KV 1794
>gi|387596656|gb|EIJ94277.1| RNA polymerase 2 [Nematocida parisii ERTm1]
Length = 1428
Score = 269 bits (688), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 157/431 (36%), Positives = 246/431 (57%), Gaps = 31/431 (7%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+ E + + + + ++ +G+P+ G +QDHV+ GA LS ++ F+ + EY L+ AL +
Sbjct: 556 QVEVAEVCSTNHCFISATNGAPVRGHVQDHVVMGAILSQKNIFVEKDEYAQLLVAALGNI 615
Query: 73 NT--EIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ + P I +P+ +TG Q ++ VI NL +D T+
Sbjct: 616 PSIKKYALEQPAILRPVRKYTGNQCITGVIRNLG----------------IDISISCKTK 659
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLF 190
+ D +T R+G ++ G LDK Q G++ YGL HAV + +G + +LL+ + +L
Sbjct: 660 ------LSDQFIT-RNGVVICGSLDKSQIGTSSYGLTHAVNEKYGGAMSNNLLTAIGRLL 712
Query: 191 TVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPE-IISSQ 249
L G + + D+ + + + R + I + G+ + N L+ +PE ++
Sbjct: 713 NRALVVFGHSCTMDDLAIFEGAEHCRRQEIEQGLLEGSSVS-NTF---LENNPEYLLKVS 768
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
A +P+ + ++D + + + ++ + + GL +N + MV SGAKGS
Sbjct: 769 RIAAIGEVPEDKKELDAEMRKPTSECSSKVLDIT-SAGLCTKGKSNRMYIMVASGAKGSL 827
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
VN QI +LGQ ELEG R MM +GRTLP+F P E +PRA GF+ RF+TG+ P+EF+F
Sbjct: 828 VNLGQIISMLGQQELEGMRVPMMPTGRTLPTFNPLENTPRAHGFIAQRFLTGVHPEEFYF 887
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
HCMAGREGLIDTAVKTSRSGYLQRCL+KHLEGL + D +V+D+D S+IQ++YGEDG+
Sbjct: 888 HCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLRIDVDGSVKDADGSVIQMVYGEDGIHP 947
Query: 430 TKRQYLTDKQF 440
K YL + +F
Sbjct: 948 EKSAYLHNHEF 958
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 148/464 (31%), Positives = 225/464 (48%), Gaps = 65/464 (14%)
Query: 561 DMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILM 620
D ++ + + A PGE VGVLAAQS+GEPSTQMTLNTFH AG G NVTLG+PRL+E++M
Sbjct: 1007 DNLWERYIKCTAEPGEAVGVLAAQSVGEPSTQMTLNTFHLAGVGGKNVTLGMPRLKELVM 1066
Query: 621 MATKAIKTPSMEIPF-LPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHM 679
ATK IKTP M + P P E+ N R ++ ++ +K+ E +
Sbjct: 1067 HATKKIKTPIMTVEAKRPPTPGEEQILNVSG----RKSLLSLITGIKLSEQV-------- 1114
Query: 680 NYQMKFCFIPAHMYRDKTSVKP-SKIIDHFERKFLKELEVAIAKRAA---QGLKNMNIEQ 735
+ + P K S+ P S ++D E E V ++ + L + I +
Sbjct: 1115 ---LLYNTTPVQQL--KISITPFSAVLDAVESALRSEFFVRFSRNMKMFFKSLASQEITE 1169
Query: 736 SRDQMEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPED 795
+ ++++ V D+ DE+ D + SH ED EEP D
Sbjct: 1170 TSKELKELVLDN------------------PDEDEDASSSSTSH------EDLSDEEPSD 1205
Query: 796 EERMSEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHM------W 849
E+ E+E D ++F+ +F + + V D H +H + K +M
Sbjct: 1206 EDGKDEQESDHEE----DKFEGKFEEPS--CVNDGTTIHITLHTSAAYKTLYMPRIEGIL 1259
Query: 850 CKLLFLPSNLFEE---KESKHLLKTDGINVNFI----SQYRHLLDLNKLYVNDIHYMAST 902
K+ FE S++ ++ GI+ F S L+D+ + N I M ST
Sbjct: 1260 SKMYLETGATFESCTYNNSQYFVQQGGIHSLFDRVGDSLLCDLMDVTTVRSNSIWEMFST 1319
Query: 903 YGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQK 962
GIEAA IIRE+ VF VYGI +D RHLSL+ADYMTH GT ++ NR+ + S IQ+
Sbjct: 1320 LGIEAARSSIIREIAAVFEVYGITIDYRHLSLIADYMTHKGTIISFNRSAFSVMGSPIQR 1379
Query: 963 MTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+++E I+ + D+L PS+ + +G+ GT + ++
Sbjct: 1380 ISYETAYTFIKDTIVDSSVDNLINPSSCLTIGKPIPIGTNMSEV 1423
>gi|387594502|gb|EIJ89526.1| RNA polymerase 2 [Nematocida parisii ERTm3]
Length = 1379
Score = 269 bits (687), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 157/431 (36%), Positives = 246/431 (57%), Gaps = 31/431 (7%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+ E + + + + ++ +G+P+ G +QDHV+ GA LS ++ F+ + EY L+ AL +
Sbjct: 507 QVEVAEVCSTNHCFISATNGAPVRGHVQDHVVMGAILSQKNIFVEKDEYAQLLVAALGNI 566
Query: 73 NT--EIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ + P I +P+ +TG Q ++ VI NL +D T+
Sbjct: 567 PSIKKYALEQPAILRPVRKYTGNQCITGVIRNLG----------------IDISISCKTK 610
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLF 190
+ D +T R+G ++ G LDK Q G++ YGL HAV + +G + +LL+ + +L
Sbjct: 611 ------LSDQFIT-RNGVVICGSLDKSQIGTSSYGLTHAVNEKYGGAMSNNLLTAIGRLL 663
Query: 191 TVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPE-IISSQ 249
L G + + D+ + + + R + I + G+ + N L+ +PE ++
Sbjct: 664 NRALVVFGHSCTMDDLAIFEGAEHCRRQEIEQGLLEGSSVS-NTF---LENNPEYLLKVS 719
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
A +P+ + ++D + + + ++ + + GL +N + MV SGAKGS
Sbjct: 720 RIAAIGEVPEDKKELDAEMRKPTSECSSKVLDIT-SAGLCTKGKSNRMYIMVASGAKGSL 778
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
VN QI +LGQ ELEG R MM +GRTLP+F P E +PRA GF+ RF+TG+ P+EF+F
Sbjct: 779 VNLGQIISMLGQQELEGMRVPMMPTGRTLPTFNPLENTPRAHGFIAQRFLTGVHPEEFYF 838
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
HCMAGREGLIDTAVKTSRSGYLQRCL+KHLEGL + D +V+D+D S+IQ++YGEDG+
Sbjct: 839 HCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLRIDVDGSVKDADGSVIQMVYGEDGIHP 898
Query: 430 TKRQYLTDKQF 440
K YL + +F
Sbjct: 899 EKSAYLHNHEF 909
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 148/464 (31%), Positives = 225/464 (48%), Gaps = 65/464 (14%)
Query: 561 DMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILM 620
D ++ + + A PGE VGVLAAQS+GEPSTQMTLNTFH AG G NVTLG+PRL+E++M
Sbjct: 958 DNLWERYIKCTAEPGEAVGVLAAQSVGEPSTQMTLNTFHLAGVGGKNVTLGMPRLKELVM 1017
Query: 621 MATKAIKTPSMEIPF-LPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHM 679
ATK IKTP M + P P E+ N R ++ ++ +K+ E +
Sbjct: 1018 HATKKIKTPIMTVEAKRPPTPGEEQILNVSG----RKSLLSLITGIKLSEQV-------- 1065
Query: 680 NYQMKFCFIPAHMYRDKTSVKP-SKIIDHFERKFLKELEVAIAKRAA---QGLKNMNIEQ 735
+ + P K S+ P S ++D E E V ++ + L + I +
Sbjct: 1066 ---LLYNTTPVQQL--KISITPFSAVLDAVESALRSEFFVRFSRNMKMFFKSLASQEITE 1120
Query: 736 SRDQMEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPED 795
+ ++++ V D+ DE+ D + SH ED EEP D
Sbjct: 1121 TSKELKELVLDN------------------PDEDEDASSSSTSH------EDLSDEEPSD 1156
Query: 796 EERMSEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHM------W 849
E+ E+E D ++F+ +F + + V D H +H + K +M
Sbjct: 1157 EDGKDEQESDHEE----DKFEGKFEEPS--CVNDGTTIHITLHTSAAYKTLYMPRIEGIL 1210
Query: 850 CKLLFLPSNLFEE---KESKHLLKTDGINVNFI----SQYRHLLDLNKLYVNDIHYMAST 902
K+ FE S++ ++ GI+ F S L+D+ + N I M ST
Sbjct: 1211 SKMYLETGATFESCTYNNSQYFVQQGGIHSLFDRVGDSLLCDLMDVTTVRSNSIWEMFST 1270
Query: 903 YGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQK 962
GIEAA IIRE+ VF VYGI +D RHLSL+ADYMTH GT ++ NR+ + S IQ+
Sbjct: 1271 LGIEAARSSIIREIAAVFEVYGITIDYRHLSLIADYMTHKGTIISFNRSAFSVMGSPIQR 1330
Query: 963 MTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+++E I+ + D+L PS+ + +G+ GT + ++
Sbjct: 1331 ISYETAYTFIKDTIVDSSVDNLINPSSCLTIGKPIPIGTNMSEV 1374
>gi|357609436|gb|EHJ66444.1| hypothetical protein KGM_02886 [Danaus plexippus]
Length = 1072
Score = 268 bits (686), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 202/658 (30%), Positives = 309/658 (46%), Gaps = 76/658 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM S + P++G L QD + G ++ RD+F T E LV L
Sbjct: 204 RAEALILMGNKSNLVTPRNGELLIAATQDFITGGYLITQRDSFFTLPEARQLVACLLAGP 263
Query: 73 NTEIRT--LPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
++ +R PP I KP LWTGKQ+ S + + P + ++ G K + Q
Sbjct: 264 DSTMRVDMPPPAILKPRMLWTGKQIFSLI---MKPNKRCEVKANLETKG----KNYTGNQ 316
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
V D++V IR+ EL+ G +DK GS T+ + + + G E+A+ + LA++
Sbjct: 317 D---MCVQDSYVIIRNSELICGSMDKSTLGSGTKNSVFYILLRDWGEEYAVRGMWRLARM 373
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
+ Y+ GF+ G+ D+ + + K++ + C+ L ++ + Q
Sbjct: 374 ASYYMMNRGFSFGIIDVTPGNKLIEAKNKLLESGY-----SKCDGYILEMEKG----TLQ 424
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
Q ++ ++++ ++I ++ E P N M +SG+KGS
Sbjct: 425 CQPG--------CSMEETLEAIMLSELSSIRELAAKACFRELHPTNAPLIMAQSGSKGSN 476
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ +GQ L GKR R+LP F + P A GFV+ F +G+ P EFFF
Sbjct: 477 INISQMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYSGLTPTEFFF 536
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H M GREGL+DTAVKT+ +GYLQR LVK LE L +HYDMTVR++ ++Q YG DGLD
Sbjct: 537 HTMGGREGLVDTAVKTAETGYLQRRLVKSLEDLVLHYDMTVRNATSEVVQFRYGSDGLDP 596
Query: 430 TKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPHR 489
S++E + P+ L +L S + P
Sbjct: 597 -----------SYMEG---------------RDRPVDLTRVLRHVRASCRTQD--EEPLD 628
Query: 490 TKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTF-----QPDAHFGSISENLADS-V 543
+ + E+ LDD FK CP + A S+ E A +
Sbjct: 629 GEGIVVAAEETLALDD---------FKTCPPEFKAELLEFLKGTAAKVRSLRERYASAGP 679
Query: 544 VKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGR 603
V R + + +F + K S+ PG VG LAAQSIGEP TQMTL TFHFAG
Sbjct: 680 VALQLERLTLTQLVRFIRVCHEKYQRSIIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGV 739
Query: 604 GDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADV 661
MN+T G+PR++EI+ A+K I TP + + P ++ A R+ + + T+ ++
Sbjct: 740 ASMNITQGVPRVKEII-NASKNISTPIITAELME--PTDQEFARRVKGRVEKTTLGEI 794
Score = 66.2 bits (160), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 65/122 (53%), Gaps = 1/122 (0%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D + N+I + T GIEAA I+ EV+ V A +G+ VD RH++L+A M G
Sbjct: 923 IDGRRTTSNNILEVFHTLGIEAAAGTIMSEVEAVMAGHGMAVDGRHVALLAAQMCARGEV 982
Query: 946 VAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
+ + R G+ R+ S + +FE + + A+ G+ D + S ++LG GTG+
Sbjct: 983 LGITRYGLARMKESVLNLASFEKTADHLFDAAYYGQRDRIEGVSECIILGVPAGIGTGVL 1042
Query: 1005 QL 1006
QL
Sbjct: 1043 QL 1044
>gi|158298044|ref|XP_318130.4| AGAP004703-PA [Anopheles gambiae str. PEST]
gi|157014619|gb|EAA13195.5| AGAP004703-PA [Anopheles gambiae str. PEST]
Length = 1379
Score = 268 bits (686), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 219/692 (31%), Positives = 317/692 (45%), Gaps = 102/692 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM S + P++G L QD + G L+ +D FLT + M L A C+L
Sbjct: 519 RAEALVLMGNKSNLVTPRNGELLIAATQDFITGGYLLTQKDQFLTLEQVMQL---AACML 575
Query: 73 -----NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
N I P I KP LWTGKQ+ S + L P + + G + +
Sbjct: 576 SGPDSNMVIDLPRPAILKPRKLWTGKQIFSLI---LKPNSQSCVNANLYTKG----RNYT 628
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCL 186
V W V IR+ +LL G +DK GS T+ + + + G E+AI + L
Sbjct: 629 RDNDMCVKDSW---VIIRNSQLLCGAMDKGTLGSGTKNCIFYVILRDFGEEYAIKSMWRL 685
Query: 187 AKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEII 246
A++ + ++ GF+ G+ D+ ++ ++ K++ R E L P
Sbjct: 686 ARMASYFMMNHGFSFGIGDVTPSRKLLEEKQKLLENGYRKCDEYIAEMKKGTLQCQPGCT 745
Query: 247 SSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAK 306
+ Q EA ++ K ++I ++ E P N+ M +SG+K
Sbjct: 746 AEQTLEA-----------------VMLKELSSIRELAAKACFRELHPTNSALIMAQSGSK 788
Query: 307 GSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQE 366
GS +N Q+ +GQ + GKR R LP F + P A GFV F +G+ P E
Sbjct: 789 GSNINISQMIACVGQQAINGKRVPNGFEDRALPHFEKFSKIPAARGFVQNSFYSGLTPTE 848
Query: 367 FFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDG 426
FFFH MAGREGL+DTAVKT+ +GYLQR LVK LE L V YD TVR++ +++ YG DG
Sbjct: 849 FFFHTMAGREGLVDTAVKTAETGYLQRRLVKCLEDLVVQYDGTVRNAIGEVVEFSYGADG 908
Query: 427 LD-----VTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKP 481
LD V + ++QF + + + C ++ L + LS +L T +
Sbjct: 909 LDPVYMEVKNKPVDIERQFMHVRNMLP--CRDEIPLR--GEEVLSEGERILSTPQ----- 959
Query: 482 NFIFSPHRTKF---TMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISEN 538
FS R F +D LE++ + ++ YR P ++T G + E
Sbjct: 960 ---FSNCRQDFRKECLDFLEKFGRRLCTLQRLYRNG------PRVTTEVQRTTAGQLEEF 1010
Query: 539 LADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTF 598
L KY K T+ PG VG LAAQSIGEP TQMTL TF
Sbjct: 1011 LLQVRNKYNKAVTE---------------------PGTAVGALAAQSIGEPGTQMTLKTF 1049
Query: 599 HFAGRGDMNVTLGIPRLREILMMATKAIKTP--SMEIPFLPDMPKLEKKANRLAKSMTRI 656
HFAG MN+T G+PR+ EI+ ATKAI TP + EI +M K R+ K+ T
Sbjct: 1050 HFAGVASMNITQGVPRIVEII-NATKAISTPIITAEIENNTNMEFARKVKARIEKT-TLG 1107
Query: 657 TMADVLEKVKIKEWLEISPEPHMNYQMKFCFI 688
++ +E+V Y+M CF+
Sbjct: 1108 EISSYIEEV---------------YKMNECFL 1124
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 65/119 (54%), Gaps = 1/119 (0%)
Query: 889 NKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAM 948
N+ N+I + T GIEAA I+ E+ V +G+ VD RH+ L++ MT G + +
Sbjct: 1241 NRTKSNNILEVYQTLGIEAARTTIMTEITEVMEGHGMSVDHRHIMLLSGQMTSRGEVLGI 1300
Query: 949 NRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
R+G+ ++ S +FE + + A+ G+ DS+ S R++LG GTGLF+L
Sbjct: 1301 TRHGLAKMRESVFNLASFEKTADHLFDAAYYGQTDSVDGVSERIILGMPASIGTGLFKL 1359
>gi|451770412|ref|NP_001263425.1| DNA-directed RNA polymerase III subunit RPC1 [Danio rerio]
Length = 1390
Score = 268 bits (685), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 203/621 (32%), Positives = 300/621 (48%), Gaps = 57/621 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF R + +V L
Sbjct: 516 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRTKACQIVASILVGK 575
Query: 73 NTEIR-TLP-PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ +I+ +LP P I KP+ LWTGKQ+ S + L P + G KQ+
Sbjct: 576 DEKIKISLPHPAILKPIRLWTGKQIFSLI---LKPSKSCPVMANLRTKG----KQYCGKG 628
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L D+ V I + EL+ G +DK GS ++ + + + G + A +S LA+L
Sbjct: 629 EDL--CANDSFVVIHNSELMCGSMDKGTLGSGSKNNIFYILLRDWGQQEAADAMSRLARL 686
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
VYL GF++G+ D+ Q + + ++++ G E C+ L T Q
Sbjct: 687 APVYLSNRGFSIGIGDVTPGQGLLKAKQELLDA----GYEK-CDEYIDALKTG----RLQ 737
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
Q + A I ++ L + ++ CL E +N+ M G+KGS
Sbjct: 738 QQPGCTAEETLEALILKE----LSVIRDHAGSACLRE----LDKSNSPLIMALCGSKGSF 789
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ +GQ + G R R+LP F + P A GFV F +G+ P EFFF
Sbjct: 790 INISQMIACVGQQAISGSRVPDGFENRSLPHFQKHSKLPAAKGFVADSFYSGLTPTEFFF 849
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H MAGREGL+DTAVKT+ +GY+QR LVK LE L YD+TVR S +IQ +YG DGLD
Sbjct: 850 HTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDP 909
Query: 430 TKRQYLTDK-QFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPH 488
+ + +F + DNI+ + S + LS LLL + + +F+
Sbjct: 910 AAMEGKDEPLEFKRVLDNIRAVYS------CTGEPALSRNELLLTSDSIMKRKDFLCC-- 961
Query: 489 RTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK 548
+ F ++ + + +K +K K +G + V Y
Sbjct: 962 KDTFLEEIRKFIKTVSEKVKKTRDK------------------YGINDNGTTEPKVLYQL 1003
Query: 549 GRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
R + ++KF + K + + PG VG L AQSIGEP TQMTL TFHFAG MN+
Sbjct: 1004 DRITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNI 1063
Query: 609 TLGIPRLREILMMATKAIKTP 629
TLG+PR++EI+ A+K I TP
Sbjct: 1064 TLGVPRIKEII-NASKNISTP 1083
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 74/131 (56%), Gaps = 1/131 (0%)
Query: 884 HLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSG 943
H ++ +K N+ + + T GIEAA II E++ +G+ +D RH+ L+AD M++ G
Sbjct: 1239 HGVNGSKTTSNNTYEVEKTLGIEAARSTIINEIQYTMVNHGMSIDRRHVMLLADLMSYKG 1298
Query: 944 TYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTG 1002
+ + R G+ ++ S + +FE + + A+ G++DS+ S +++G GTG
Sbjct: 1299 EILGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTG 1358
Query: 1003 LFQLRNREKKK 1013
LF+L +R ++
Sbjct: 1359 LFKLLHRSNRE 1369
>gi|308449389|ref|XP_003087948.1| CRE-RPC-1 protein [Caenorhabditis remanei]
gi|308250793|gb|EFO94745.1| CRE-RPC-1 protein [Caenorhabditis remanei]
Length = 1027
Score = 268 bits (684), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 210/694 (30%), Positives = 322/694 (46%), Gaps = 90/694 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAE---YMNLVYQAL 69
KAEAS LMNV + + P+ G PL IQD + G L+ +DTFL RAE + + A
Sbjct: 113 KAEASELMNVKNNLITPRSGEPLVAAIQDFITGGYLLTHKDTFLPRAEVYRFAAALIDAS 172
Query: 70 CILNTEIRTLPPTIWKPMPLWTGKQVLSTVI---------INLTPKDKVIIRHGELLSGI 120
T+IR PP I KP+ LWTGKQ++ +I +NLT K+K + EL S
Sbjct: 173 AKKQTKIRIPPPAIRKPVELWTGKQLIELIIRPDKGSQISLNLTAKNKSYSGNLELCS-- 230
Query: 121 LDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGST-QYGLVHAVWDTHGAEHA 179
D++V IR+ LL+G+LDK GS+ + + + + +G + A
Sbjct: 231 -----------------KDSYVIIRNSVLLAGVLDKSLLGSSSKVNIFYMLMRDYGEDAA 273
Query: 180 ISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPL 239
+ + LA++ V+L GF++G+ D+ + +++ ++++ + L
Sbjct: 274 VDAMWRLARMAPVFLSNRGFSIGIGDVRPSERLLQEKGQLVDTGYEQCAQYIRELEEGKL 333
Query: 240 DTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQF 299
P + EA I R+ L + ++ QVCL P
Sbjct: 334 KAQPGCTEEETLEAI---------ILRE----LSTIRDHAGQVCLRNLSKYNAPLT---- 376
Query: 300 MVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFM 359
M G+KGS +N Q+ +GQ + G RP R+LP F + +P A GFV F
Sbjct: 377 MAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTPEAKGFVANSFY 436
Query: 360 TGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQ 419
+G+ P EFFFH M GREGL+DTAVKT+ +GY+QR LVK LE L YD TVR S +I+
Sbjct: 437 SGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYDGTVRSSVGDVIE 496
Query: 420 VLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSG 479
++ G D + K S ++ + + + K+ P+ A L K+
Sbjct: 497 FVF---GEDGLDPAMMEAKDGSVVD--FTHVLEHAKNIQTKKETPIP-ADKLEDVLKNEV 550
Query: 480 KPNFIFS-PHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSIS-- 536
+ F PH F L + Q + + KK++ C Q T + + H +
Sbjct: 551 QKQFKGKYPH---FAEQLKDYLLQTEIRKSKKWQNGKTHCSQH--ETAEENHHCRRVQSA 605
Query: 537 ------------------------ENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLA 572
EN+ + + T + + F + +YK ++
Sbjct: 606 RSXXXXVKNGRMEKLTVHNIETAEENIREKSLLLTNSCLTKAQLHSFIQLCYYKVARAIT 665
Query: 573 NPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSME 632
PG VG +AA SIGEPSTQMTL TFHFAG MN+T G+PR++EI+ A K I TP +
Sbjct: 666 EPGTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNITQGVPRIKEII-NAVKTISTPIIT 724
Query: 633 IPFLPDMPKLEKKANRLAKSMTRITMADVLEKVK 666
L P E A R+ + + T+ ++ + ++
Sbjct: 725 AALLD--PYDESLARRVKARIEKTTLGEICDYIE 756
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 69/129 (53%), Gaps = 1/129 (0%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D K N+ +A GIEAA II E+ +GI +D RH+ L+AD MT+ G
Sbjct: 880 VDPRKTNFNNALVVAEVLGIEAARTCIINEIIATMDAHGIGLDRRHVMLLADVMTYRGEV 939
Query: 946 VAMNRNG-IRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
+ + RNG +++ S + +FE ++ + +A+ + D + S +++G GTG F
Sbjct: 940 LGITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPMTVGTGTF 999
Query: 1005 QLRNREKKK 1013
+L + +KK
Sbjct: 1000 KLMQKHEKK 1008
>gi|68481275|ref|XP_715412.1| hypothetical protein CaO19.3103 [Candida albicans SC5314]
gi|46437034|gb|EAK96387.1| hypothetical protein CaO19.3103 [Candida albicans SC5314]
Length = 1448
Score = 268 bits (684), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 209/684 (30%), Positives = 324/684 (47%), Gaps = 88/684 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + L PK G P+ QD + +S +D+F RA + L+ +
Sbjct: 524 RAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRATLVQLL-SMMSDA 582
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQ--FGSTQ 130
+ + PPTI+KP+ LWTGKQV S ++I K V+I LD K F +
Sbjct: 583 DIQFDIPPPTIFKPVMLWTGKQVFS-LLIKPNKKSNVVIN--------LDAKNKTFHPPK 633
Query: 131 YGLVHAVW--DTHVTIRHGELLSGILDKKQFG-STQYGLVHAVWDTHGAEHAISLLSCLA 187
GL + + D V IR ++LSG++DK G ++ + + + +G + A + ++ +A
Sbjct: 634 KGLPNEMSPNDGFVVIRGSKILSGLMDKSTLGDGKKHSVFYTILRDYGPQEAAAAMNRMA 693
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNAL-----GLPLDTD 242
KL +L GF++G+ D+ E +K+ ++ +A C+ L L+T
Sbjct: 694 KLCARFLGNRGFSIGINDVTPADELKQKKELMVEQAY-----LKCDQLIDLYNRGKLETQ 748
Query: 243 PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPE--GLIEPFPANNLQFM 300
P Q EA + LL KV + VC+ E L P M
Sbjct: 749 PGCNEEQTLEA-------------KIGGLLSKVREEVGDVCIRELDSLNAPL------IM 789
Query: 301 VESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMT 360
G+KGST+N Q+ ++GQ + G R R+LP F +P++ GFV F +
Sbjct: 790 ATCGSKGSTLNVSQMVAVVGQQIISGHRVPDGFQDRSLPHFTKNSKTPQSKGFVRNSFFS 849
Query: 361 GIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQV 420
G+ P EF FH ++GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR+S ++Q
Sbjct: 850 GLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSQYDNTVRNSSNGIVQF 909
Query: 421 LYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGK 480
YG DGLD Y + + N +W +Y + N+ LL ++
Sbjct: 910 TYGGDGLD----PYDMEGDAKPVNFNRQWDHAYNLTYNVDDAS--------LLPYQIEEL 957
Query: 481 PNFIFSPHRTKFT-MDLLE------------QWYQLDDKARKKYR--KKFKACPQPLIST 525
+ + +P K D L ++ +D R Y+ + F ++
Sbjct: 958 VDSVLAPLENKLIRYDNLGNALNDKEKEQKIEYIDQNDGERDFYKSIRDFLTKKSIRLAL 1017
Query: 526 FQPD----AHFGSISEN---LADSVVKYTK----GRTDASHVDKFYDMIFYKNLLSLANP 574
+ + A+F + +E+ + + VK + + V F + YK + P
Sbjct: 1018 LREERGLKAYFTAPTEDEIVMDEDAVKVKAIDQLSKISSKAVKTFLEQCLYKYSRARVEP 1077
Query: 575 GENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIP 634
G VG + AQSIGEP TQMTL TFHFAG MNVTLG+PR++EI+ A+K I TP +
Sbjct: 1078 GTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII-NASKVISTPIINAV 1136
Query: 635 FLPDMPKLEKKANRLAKSMTRITM 658
+ D ++ A R+AK T+
Sbjct: 1137 LVNDDDEI---AARVAKGRIEKTL 1157
Score = 73.9 bits (180), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 16/154 (10%)
Query: 866 KHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 925
K ++ T+GI V + H+L++N++ GIEAA II+E+ + +G+
Sbjct: 1291 KDVMNTEGI-VGTKTTTNHVLEVNQIL-----------GIEAARGSIIKEIDYTMSNHGM 1338
Query: 926 EVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSL 984
VDPRH+ L+ D MT+ G + + R G+ ++ S +Q +FE + + A+ + D +
Sbjct: 1339 SVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFFMKNDKI 1398
Query: 985 RAPSARVMLGQECRQGTGLFQL---RNREKKKKK 1015
S ++LGQ GTG F+L N EKK K
Sbjct: 1399 EGVSECIILGQTMSIGTGSFKLVKSSNCEKKALK 1432
>gi|238881190|gb|EEQ44828.1| DNA-directed RNA polymerase III largest subunit [Candida albicans
WO-1]
Length = 1448
Score = 268 bits (684), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 209/684 (30%), Positives = 324/684 (47%), Gaps = 88/684 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + L PK G P+ QD + +S +D+F RA + L+ +
Sbjct: 524 RAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRATLVQLL-SMMSDA 582
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQ--FGSTQ 130
+ + PPTI+KP+ LWTGKQV S ++I K V+I LD K F +
Sbjct: 583 DIQFDIPPPTIFKPVMLWTGKQVFS-LLIKPNKKSNVVIN--------LDAKNKTFHPPK 633
Query: 131 YGLVHAVW--DTHVTIRHGELLSGILDKKQFG-STQYGLVHAVWDTHGAEHAISLLSCLA 187
GL + + D V IR ++LSG++DK G ++ + + + +G + A + ++ +A
Sbjct: 634 KGLPNEMSPNDGFVVIRGSKILSGLMDKSTLGDGKKHSVFYTILRDYGPQEAAAAMNRMA 693
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNAL-----GLPLDTD 242
KL +L GF++G+ D+ E +K+ ++ +A C+ L L+T
Sbjct: 694 KLCARFLGNRGFSIGINDVTPADELKQKKELMVEQAY-----LKCDQLIDLYNRGKLETQ 748
Query: 243 PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPE--GLIEPFPANNLQFM 300
P Q EA + LL KV + VC+ E L P M
Sbjct: 749 PGCNEEQTLEA-------------KIGGLLSKVREEVGDVCIRELDSLNAPL------IM 789
Query: 301 VESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMT 360
G+KGST+N Q+ ++GQ + G R R+LP F +P++ GFV F +
Sbjct: 790 ATCGSKGSTLNVSQMVAVVGQQIISGHRVPDGFQDRSLPHFTKNSKTPQSKGFVRNSFFS 849
Query: 361 GIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQV 420
G+ P EF FH ++GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR+S ++Q
Sbjct: 850 GLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSQYDNTVRNSSNGIVQF 909
Query: 421 LYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGK 480
YG DGLD Y + + N +W +Y + N+ LL ++
Sbjct: 910 TYGGDGLD----PYDMEGDAKPVNFNRQWDHAYNLTYNVDDAS--------LLPYQIEEL 957
Query: 481 PNFIFSPHRTKFT-MDLLE------------QWYQLDDKARKKYR--KKFKACPQPLIST 525
+ + +P K D L ++ +D R Y+ + F ++
Sbjct: 958 VDSVLAPLENKLIRYDNLGNALNDKEKEQKIEYIDQNDGERDFYKSIRDFLTKKSIRLAR 1017
Query: 526 FQPD----AHFGSISEN---LADSVVKYTK----GRTDASHVDKFYDMIFYKNLLSLANP 574
+ + A+F + +E+ + + VK + + V F + YK + P
Sbjct: 1018 LREERGLKAYFTAPTEDEIVMDEDTVKVKAIDQLSKISSKAVKTFLEQCLYKYSRARVEP 1077
Query: 575 GENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIP 634
G VG + AQSIGEP TQMTL TFHFAG MNVTLG+PR++EI+ A+K I TP +
Sbjct: 1078 GTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII-NASKVISTPIINAV 1136
Query: 635 FLPDMPKLEKKANRLAKSMTRITM 658
+ D ++ A R+AK T+
Sbjct: 1137 LVNDDDEI---AARVAKGRIEKTL 1157
Score = 73.9 bits (180), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 16/154 (10%)
Query: 866 KHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 925
K ++ T+GI V + H+L++N++ GIEAA II+E+ + +G+
Sbjct: 1291 KDVMNTEGI-VGTKTTTNHVLEVNQIL-----------GIEAARGSIIKEIDYTMSNHGM 1338
Query: 926 EVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSL 984
VDPRH+ L+ D MT+ G + + R G+ ++ S +Q +FE + + A+ + D +
Sbjct: 1339 SVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFFMKNDKI 1398
Query: 985 RAPSARVMLGQECRQGTGLFQL---RNREKKKKK 1015
S ++LGQ GTG F+L N EKK K
Sbjct: 1399 EGVSECIILGQTMSIGTGSFKLVKSSNCEKKALK 1432
>gi|68481134|ref|XP_715482.1| hypothetical protein CaO19.10615 [Candida albicans SC5314]
gi|46437106|gb|EAK96458.1| hypothetical protein CaO19.10615 [Candida albicans SC5314]
Length = 1448
Score = 268 bits (684), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 209/684 (30%), Positives = 324/684 (47%), Gaps = 88/684 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + L PK G P+ QD + +S +D+F RA + L+ +
Sbjct: 524 RAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRATLVQLL-SMMSDA 582
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQ--FGSTQ 130
+ + PPTI+KP+ LWTGKQV S ++I K V+I LD K F +
Sbjct: 583 DIQFDIPPPTIFKPVMLWTGKQVFS-LLIKPNKKSNVVIN--------LDAKNKTFHPPK 633
Query: 131 YGLVHAVW--DTHVTIRHGELLSGILDKKQFG-STQYGLVHAVWDTHGAEHAISLLSCLA 187
GL + + D V IR ++LSG++DK G ++ + + + +G + A + ++ +A
Sbjct: 634 KGLPNEMSPNDGFVVIRGSKILSGLMDKSTLGDGKKHSVFYTILRDYGPQEAAAAMNRMA 693
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNAL-----GLPLDTD 242
KL +L GF++G+ D+ E +K+ ++ +A C+ L L+T
Sbjct: 694 KLCARFLGNRGFSIGINDVTPADELKQKKELMVEQAY-----LKCDQLIDLYNRGKLETQ 748
Query: 243 PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPE--GLIEPFPANNLQFM 300
P Q EA + LL KV + VC+ E L P M
Sbjct: 749 PGCNEEQTLEA-------------KIGGLLSKVREEVGDVCIRELDSLNAPL------IM 789
Query: 301 VESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMT 360
G+KGST+N Q+ ++GQ + G R R+LP F +P++ GFV F +
Sbjct: 790 ATCGSKGSTLNVSQMVAVVGQQIISGHRVPDGFQDRSLPHFTKNSKTPQSKGFVRNSFFS 849
Query: 361 GIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQV 420
G+ P EF FH ++GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR+S ++Q
Sbjct: 850 GLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSQYDNTVRNSSNGIVQF 909
Query: 421 LYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGK 480
YG DGLD Y + + N +W +Y + N+ LL ++
Sbjct: 910 TYGGDGLD----PYDMEGDAKPVNFNRQWDHAYNLTYNVDDAS--------LLPYQIEEL 957
Query: 481 PNFIFSPHRTKFT-MDLLE------------QWYQLDDKARKKYR--KKFKACPQPLIST 525
+ + +P K D L ++ +D R Y+ + F ++
Sbjct: 958 VDSVLAPLENKLIRYDNLGNALNDKEKEQKIEYIDQNDGERDFYKSIRDFLTKKSIRLAL 1017
Query: 526 FQPD----AHFGSISEN---LADSVVKYTK----GRTDASHVDKFYDMIFYKNLLSLANP 574
+ + A+F + +E+ + + VK + + V F + YK + P
Sbjct: 1018 LREERGLKAYFTAPTEDEIVMDEDAVKVKAIDQLSKISSKAVKTFLEQCLYKYSRARVEP 1077
Query: 575 GENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIP 634
G VG + AQSIGEP TQMTL TFHFAG MNVTLG+PR++EI+ A+K I TP +
Sbjct: 1078 GTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII-NASKVISTPIINAV 1136
Query: 635 FLPDMPKLEKKANRLAKSMTRITM 658
+ D ++ A R+AK T+
Sbjct: 1137 LVNDDDEI---AARVAKGRIEKTL 1157
Score = 73.9 bits (180), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 16/154 (10%)
Query: 866 KHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 925
K ++ T+GI V + H+L++N++ GIEAA II+E+ + +G+
Sbjct: 1291 KDVMNTEGI-VGTKTTTNHVLEVNQIL-----------GIEAARGSIIKEIDYTMSNHGM 1338
Query: 926 EVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSL 984
VDPRH+ L+ D MT+ G + + R G+ ++ S +Q +FE + + A+ + D +
Sbjct: 1339 SVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFFMKNDKI 1398
Query: 985 RAPSARVMLGQECRQGTGLFQL---RNREKKKKK 1015
S ++LGQ GTG F+L N EKK K
Sbjct: 1399 EGVSECIILGQTMSIGTGSFKLVKSSNCEKKALK 1432
>gi|330791878|ref|XP_003284018.1| RNA polymerase III, largest subunit [Dictyostelium purpureum]
gi|325086064|gb|EGC39460.1| RNA polymerase III, largest subunit [Dictyostelium purpureum]
Length = 1396
Score = 268 bits (684), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 207/667 (31%), Positives = 327/667 (49%), Gaps = 50/667 (7%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA+ LM V++ + P++G PL QD + + +S RD F R + L+
Sbjct: 504 RAEATILMGVTNNLITPRNGEPLVAATQDFLTASYLISRRDAFYDRYRF-TLMCTHFADA 562
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N I PP I KP+ LWTGKQ+ + L P K S +L + S Y
Sbjct: 563 NEHIDLPPPAILKPIELWTGKQIFEVL---LRPSVK---------SHVLCTFETKSRTYS 610
Query: 133 --LVHAVWDTHVTIRHGELLSGILDKKQF-GSTQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L D +V R+ EL+ G +DK G + L H + A + ++ LAKL
Sbjct: 611 KNLYMCPKDGYVYFRNSELMCGSIDKSIIGGGNKNSLFHILMRDFSPSIAANSMTRLAKL 670
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
+L GF++G+ D+ + D+++ II A + C+ + ++S
Sbjct: 671 CARFLGDQGFSIGIPDVQPAPDLDQRKRDIIETAY-----SKCDQFLKDFENGNLPVASG 725
Query: 250 LQEAYASIPQ-FRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPA-NNLQFMVESGAKG 307
S+ Q F A++++ L ++ ++ ++C + P N+ M G+KG
Sbjct: 726 -----CSMEQTFEAKMNQT----LSQIRDDCGKLC-----VNDLPNYNSPLIMGLCGSKG 771
Query: 308 STVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEF 367
S +N Q+ C +GQ + G R + RT P FL ++ + +A GFV F TG+ P EF
Sbjct: 772 SNINIAQMICCVGQQIVNGTRIPNGFTNRTTPHFLHFQKNAKAKGFVSNSFYTGMIPTEF 831
Query: 368 FFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL 427
FFH M GREGL+DTAVKT+ +GY+QR L+K LE L+ HYD TVRDS ++Q YG+DGL
Sbjct: 832 FFHTMGGREGLVDTAVKTAETGYMQRRLMKALEDLSTHYDYTVRDSFGGIVQFCYGDDGL 891
Query: 428 DVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSL--ALLLLLTFKSSGKPNFIF 485
D + D+ FL ++ + S + +N P + + +++ K+ + +F
Sbjct: 892 DPAGME-AKDRPVDFLR-AMQAVKSTRRCINERALLPFEIRKKVEVIIKGKAFAECTDLF 949
Query: 486 SPHRTKFTMDLLEQWYQLDD--KARKKYR-KKFKACPQPLISTFQPDAHFGSISENLA-- 540
+F + +Q +++ K R ++ K++ + + + SI E +A
Sbjct: 950 KEEILEFFIGKPKQTGYIEELIKLRNQFGLKEYTEDTANIEDALERENEELSIDERIARE 1009
Query: 541 -DSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFH 599
+ V R ++ V+ F D+ K + PG VG + AQSIGEP TQMTL TFH
Sbjct: 1010 SNQQVVDQIHRITSTQVELFLDICLDKYNRAKIEPGTAVGAIGAQSIGEPGTQMTLKTFH 1069
Query: 600 FAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMA 659
FAG MNVTLG+PR++EI+ A K I TP + D + A +A + + T+
Sbjct: 1070 FAGVASMNVTLGVPRIKEIINGA-KNISTPIITASLNCDNDI--RSARIVAGRIEKTTLG 1126
Query: 660 DVLEKVK 666
V E +K
Sbjct: 1127 HVAEHIK 1133
Score = 66.6 bits (161), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 64/120 (53%), Gaps = 1/120 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N I +T GIE A I+ E++ + +G+ +D RH+ L+AD M+ G + + R GI
Sbjct: 1264 NHIMECENTLGIETARNTIMSEIQMIMTSHGMSIDVRHVMLLADLMSFKGEILGITRFGI 1323
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNREKK 1012
++ S + +FE + + A++ R+D + S +++G GTGLF+L + K
Sbjct: 1324 AKMKESVLMLASFEKTTDHLFDAAVHHRQDDIVGVSECIIMGSVIPLGTGLFKLLRKSNK 1383
>gi|156841103|ref|XP_001643927.1| hypothetical protein Kpol_1016p9 [Vanderwaltozyma polyspora DSM
70294]
gi|156114557|gb|EDO16069.1| hypothetical protein Kpol_1016p9 [Vanderwaltozyma polyspora DSM
70294]
Length = 1460
Score = 268 bits (684), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 207/700 (29%), Positives = 325/700 (46%), Gaps = 109/700 (15%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + L PK G P+ QD + +S +DTFL RA + L+ +
Sbjct: 528 RAEAMNLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDTFLDRATFTQLL-SMMSDS 586
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLS---------TVIINLTPKDKVIIR-HGELLSGILD 122
N + PPTI KP LWTGKQ+ S V+INL K+KV I + L +
Sbjct: 587 NLQFDIPPPTIIKPYCLWTGKQLFSLLIKPNKDSPVVINLDAKNKVFIPPKSKSLPNEMS 646
Query: 123 KKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFG-STQYGLVHAVWDTHGAEHAIS 181
+ D V IR ++LSG++DK G ++ + + + +G + A +
Sbjct: 647 QN--------------DGFVVIRGSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAAN 692
Query: 182 LLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNAL-----G 236
++ +AKL YL GF++G+ D+ +K+ +++ A A C+ L
Sbjct: 693 AMNRMAKLCARYLGNRGFSIGISDVTPDNALKQKKEELVEIAY-----AKCDELIDLFTK 747
Query: 237 LPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPE--GLIEPFPA 294
L+T P Q EA + LL KV + +C+ E L P
Sbjct: 748 GKLETQPGCNEEQTLEA-------------KIGGLLSKVREEVGDICINELDNLNAPL-- 792
Query: 295 NNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFV 354
M G+KGS +N Q+ ++GQ + G R R+LP F +P++ GFV
Sbjct: 793 ----IMATCGSKGSNLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFRKNSKTPQSKGFV 848
Query: 355 DGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSD 414
F +G+ P EF FH ++GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR S
Sbjct: 849 RNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTSS 908
Query: 415 LSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDN---IKWICSYKVILNLLKKHPLSLALLL 471
++Q YG DGLD + +E N + + S+ +N+ + +
Sbjct: 909 NGIVQFTYGGDGLDPLE-----------MEGNAQPVNFKRSWDHAINITFDN----SAQG 953
Query: 472 LLTFKSSGKPNFIFSPHRTKFT-MDLLEQWYQLDDKARKKY-------------RKKFKA 517
LL + K N I +P + D + + +D+A+ ++ +K+
Sbjct: 954 LLPYAIINKTNDILAPFEERLIRYDNIGTLVKANDQAKDEFVDQLDSERNFYCSLRKYMQ 1013
Query: 518 CPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASH---------------VDKFYDM 562
++++ + D +S + + ++S V+KF ++
Sbjct: 1014 EKASILASIRKDKGLKELSSEPGNEFKEMDLDEGESSEARFAVEKLCKITEKTVEKFLEI 1073
Query: 563 IFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMA 622
K + PG VG + AQSIGEP TQMTL TFHFAG MNVTLG+PR++EI+ A
Sbjct: 1074 AMSKYRRARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII-NA 1132
Query: 623 TKAIKTPSMEIPFLPDMPKLEKKANRLAKS-MTRITMADV 661
+K I TP + + D +K+A R+ K + + ++DV
Sbjct: 1133 SKVISTPIINAVLVNDN---DKRAARVVKGRIEKTLLSDV 1169
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 66/119 (55%), Gaps = 1/119 (0%)
Query: 889 NKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAM 948
+K N + + S GIEAA II E+ + +G+ VDPRH+ L+ D MT+ G + +
Sbjct: 1312 SKTTTNHVLEVFSVLGIEAARSSIIGEIDYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGI 1371
Query: 949 NRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
R G+ ++ S +Q +FE + + A+ ++D++ S ++LGQ GTG F++
Sbjct: 1372 TRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVSECIILGQTMSIGTGAFKI 1430
>gi|316997001|dbj|BAJ52628.1| RNA polymerase II largest subunit [Stephanoeca diplocostata]
Length = 999
Score = 267 bits (683), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 214/695 (30%), Positives = 324/695 (46%), Gaps = 112/695 (16%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S+ +AE +M V L P+ P+ G++QD + + +S RDTF+ R + M+L+
Sbjct: 7 SYLTRAEIEEMMKVERNILTPQANRPVMGIVQDTLRAARMMSKRDTFMDRQQVMHLL--- 63
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVI---INLTPKDKVIIRHGELLSGILDKKQ 125
+ + R P I KP LWTGKQ+LS VI +NL K R +
Sbjct: 64 MFYPEWDGRIPCPCILKPKELWTGKQLLSLVIDEKVNLDQKHSAHNR----------DED 113
Query: 126 FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSC 185
++ H DT V IR G LLSG++ K G+ L+H G + A +L
Sbjct: 114 NSDNRWIPYH---DTRVLIRGGVLLSGLICKATLGAKSGSLMHITRLECGYQVAKNLYGN 170
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEI 245
L L +L G ++G+ D + E + ++++KA + A L+ P
Sbjct: 171 LQTLINNWLVGNGASIGIGDTIADDETFAEIQELLDKASKEVNRIIRKAYRGMLEATPGN 230
Query: 246 ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGA 305
Q F Q++R +L+K ++ Q E + + NN + M SG+
Sbjct: 231 TIRQ---------TFENQVNR----VLNKARSDTGQSA--ETSLSEY--NNFKCMSRSGS 273
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KG T+N Q+ +GQ +EGKR R+LP ++ + P + GFV ++ G+ P
Sbjct: 274 KGGTLNISQVIACVGQQNVEGKRIKFGFQYRSLPHYIKDDYGPDSKGFVFNSYLRGLTPT 333
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
E FFH M GREGLIDTAVKT+ +GY+QR L+K +EGLT+ YD +VR+S+ L Q+LYGED
Sbjct: 334 ELFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMEGLTLRYDGSVRNSNGELCQLLYGED 393
Query: 426 GLDV---------TKRQYLTD--KQFSF-----------LEDNIKWICSYKVILNLLKK- 462
G+ T +Q D KQF F L+D + + + + + L +
Sbjct: 394 GMAAEWLEFQNLNTLKQSDADFEKQFRFDLNEYEMRKYVLDDIAEKVSTNPSVAHELAEE 453
Query: 463 -HPLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQP 521
L LL + GK + + + ++ +Q ++LD+K
Sbjct: 454 FEQLKRDRQLLRILRPDGKDQVVMPLNLPRLILNAQKQ-FKLDEKT-------------- 498
Query: 522 LISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLL------------ 569
+S P+ + + + VV KG S +F IF +L+
Sbjct: 499 -VSDLNPETVVQDVRDLIKRLVV--VKGSDPLSQDAQFNATIFMTSLIRAHLSTKQLMTK 555
Query: 570 ---------------------SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
+ +NPGE VG LAAQS+GEP+TQMTLNTFHFAG NV
Sbjct: 556 SRLSHEAFKWIVGEVEASFMQAQSNPGEMVGALAAQSLGEPATQMTLNTFHFAGVSAKNV 615
Query: 609 TLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLE 643
TLG+PRL+EI+ + +K KTPS+ + P+ E
Sbjct: 616 TLGVPRLKEIINV-SKQPKTPSLTVKLEPEYASTE 649
>gi|406607118|emb|CCH41506.1| DNA-directed RNA polymerase III subunit [Wickerhamomyces ciferrii]
Length = 1457
Score = 267 bits (683), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 214/682 (31%), Positives = 321/682 (47%), Gaps = 81/682 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + L PK G P+ QD + +S +D+F RA + L+ +
Sbjct: 527 RAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRATFTQLL-SMMSDG 585
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQ--FGSTQ 130
+ + PP I KP+ +WTGKQV S ++I K V+I LD K F
Sbjct: 586 DLQFDLPPPAIHKPVYMWTGKQVFS-LLIKPNKKSPVVIN--------LDAKNKAFTPPA 636
Query: 131 YGLVHAVW--DTHVTIRHGELLSGILDKKQFG-STQYGLVHAVWDTHGAEHAISLLSCLA 187
GL + D V IR ++LSG++DK G ++ + + + +G + A + ++ +A
Sbjct: 637 KGLPMEMSPNDGFVIIRGSQILSGVMDKSTLGDGKKHSVFYTILRDYGPKEAATAMNRMA 696
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNAL-----GLPLDTD 242
KL +L GF++G+ D+ + +++ A A C+ L L+T
Sbjct: 697 KLCARFLGNRGFSIGISDVTPGVALKNTKEEMVEAAY-----AKCDELIKLYSEGKLETQ 751
Query: 243 PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
P Q EA + LL KV + +VC+ E +N M
Sbjct: 752 PGCNEEQTLEA-------------KIGGLLSKVREEVGEVCINE----LDSSNAPLIMAT 794
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
G+KGST+N Q+ ++GQ + G R R+LP F +P++ GFV F +G+
Sbjct: 795 CGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTPQSKGFVRNSFFSGL 854
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
P EF FH ++GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR S ++Q Y
Sbjct: 855 SPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTSSNGIVQFTY 914
Query: 423 GEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKK---------------HPLSL 467
G DGLD + K +F N W SY V L++ ++ PL
Sbjct: 915 GGDGLDPFDMEG-DAKPVNF---NRTWDHSYNVTLDVNERSLLPYEVIEVVEEVLQPLEK 970
Query: 468 ALLLL------LTFKSSGKPNFIFSPHRTKFTMDLLEQWY--QLDDKARKKYRKKFKA-C 518
L+ L K + K FI + + + +++ + AR + +KK
Sbjct: 971 KLIRYDNLGNQLEGKDAEKIEFIDQNDAKRGFYNSIREFFASKAARLARVREQKKLHGYL 1030
Query: 519 PQPLISTFQPDAHFGSISENL--ADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGE 576
+P + Q D GS L + + K TK V KF D+ K + PG
Sbjct: 1031 EKPADESAQMDLDEGSSEAALTAVNQLAKITK-----KCVKKFLDITLIKYSRAQVEPGT 1085
Query: 577 NVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFL 636
VG +AA SIGEP TQMTL TFHFAG MNVTLG+PR++EI+ A+K I TP + +
Sbjct: 1086 AVGAIAAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII-NASKVISTPIINAVLV 1144
Query: 637 PDMPKLEKKANRLAKSMTRITM 658
D +++A R+ K T+
Sbjct: 1145 NDD---DERAARVVKGRVEKTL 1163
Score = 69.7 bits (169), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 63/118 (53%), Gaps = 1/118 (0%)
Query: 890 KLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMN 949
K N I + GIEAA II E+ + +G+ VDPRH+ L+ D M++ G + +
Sbjct: 1311 KTKTNHILEVWQVLGIEAARGSIINEIDYTMSNHGMSVDPRHIQLLGDVMSYKGEVLGIT 1370
Query: 950 RNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
R G+ ++ S +Q +FE + + AS + D++ S ++LGQ GTG F+L
Sbjct: 1371 RFGLSKMRDSVLQLASFEKTTDHLFDASFYMKSDAVEGVSECIILGQTMAIGTGAFKL 1428
>gi|401623626|gb|EJS41719.1| rpo31p [Saccharomyces arboricola H-6]
Length = 1460
Score = 266 bits (681), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 203/687 (29%), Positives = 321/687 (46%), Gaps = 90/687 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + L PK G P+ QD + +S +D+F RA + Q L ++
Sbjct: 528 RAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFYDRAT----LTQLLSMM 583
Query: 73 NTEIRTL---PPTIWKPMPLWTGKQVLS---------TVIINLTPKDKVII--RHGELLS 118
+ + PP I KP LWTGKQV S V+INL K+KV + + L S
Sbjct: 584 SDGVEQFDIPPPAIMKPYYLWTGKQVFSLLIKPNHNSPVVINLDAKNKVFVPPKSKSLPS 643
Query: 119 GILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFG-STQYGLVHAVWDTHGAE 177
+ F V IR +LSG++DK G ++ + + + +G +
Sbjct: 644 EMSQNDGF---------------VIIRGSNILSGVMDKSVLGDGKKHSVFYTILRDYGPQ 688
Query: 178 HAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL 237
A + ++ ++KL +L GF++G+ D+ + +K+ +++ A R E
Sbjct: 689 EAANAMNRMSKLCARFLGNRGFSIGINDVTPADDLKQKKEELVEIAYRKCDELITEFNRG 748
Query: 238 PLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNL 297
L+T P Q EA + L KV + VC+ E ++ + N
Sbjct: 749 ELETQPGCNEEQTLEA-------------KIGGFLSKVREEVGDVCINE--LDNW--NAP 791
Query: 298 QFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGR 357
M G+KGST+N Q+ ++GQ + G R R+LP F +P++ GFV
Sbjct: 792 LIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTPQSKGFVRNS 851
Query: 358 FMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSL 417
F +G+ P EF FH ++GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR S +
Sbjct: 852 FFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTSANGI 911
Query: 418 IQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALL------- 470
+Q YG DGLD + + + +F N W +Y + + + L A++
Sbjct: 912 VQFTYGGDGLDPLEMEG-NAQPVNF---NRSWDHAYNITFDNKDEGLLPYAIMKTANEVL 967
Query: 471 -----LLLTFKSSG---------KPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRK--- 513
L+ + +SG K ++ + L ++ L A R+
Sbjct: 968 RPLEERLIRYDNSGCLVKAEDKDKAEYVDQYDAERDFYRSLREYINLKATALANLRRSRG 1027
Query: 514 --KFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSL 571
+ P+ ++ PD + + +N+ SV + R V KF ++ +K +
Sbjct: 1028 MSELLEAPEKILEGVNPDEN---VPDNIKISVSQLY--RISEKSVKKFLEIALFKYRKAR 1082
Query: 572 ANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSM 631
PG +G + AQSIGEP TQMTL TFHFAG MNVTLG+PR++EI+ A+K I TP +
Sbjct: 1083 LEPGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII-NASKVISTPII 1141
Query: 632 EIPFLPDMPKLEKKANRLAKSMTRITM 658
+ D +++A R+ K T+
Sbjct: 1142 NAVLVNDN---DERAARVVKGRVEKTL 1165
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 67/119 (56%), Gaps = 1/119 (0%)
Query: 889 NKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAM 948
+K N + + S GIEAA I+RE+ + +G+ VDPRH+ L+ D MT+ G + +
Sbjct: 1312 SKTTTNHVLEVFSVLGIEAARYSIVREINYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGI 1371
Query: 949 NRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
R G+ ++ S +Q +FE + + A+ ++D++ S ++LGQ GTG F++
Sbjct: 1372 TRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVSECIILGQTMSIGTGSFKV 1430
>gi|71411691|ref|XP_808084.1| DNA-directed RNA polymerase I largest subunit [Trypanosoma cruzi
strain CL Brener]
gi|70872214|gb|EAN86233.1| DNA-directed RNA polymerase I largest subunit, putative [Trypanosoma
cruzi]
Length = 1802
Score = 266 bits (681), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 167/451 (37%), Positives = 233/451 (51%), Gaps = 56/451 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALC-- 70
K E LM+ + YLVP G P+ GLIQDH+ +G L+LRD FL A ++ L Y L
Sbjct: 652 KVELDVLMDANLNYLVPTSGKPIRGLIQDHIAAGVLLTLRDKFLEHATFVQLAYYGLAPY 711
Query: 71 ------ILNTEIRTLPPTIWKPMPLWTGKQVLSTVI-----INLTPKDKVIIRHGELLSG 119
I +E+ LP +W P PLWTGKQ++S VI + P I G L G
Sbjct: 712 LRQQHEITLSELIPLPAILW-PRPLWTGKQLISVVIRYVSGVGRRPDWMRINSGGASLRG 770
Query: 120 I--LDKKQFGSTQYG--LVHAVW-----DTHVTIRHGELLSGILDKKQFGSTQYGLVHAV 170
+ + + T G +V V D + + ELL G++ K Q G++ + H V
Sbjct: 771 VSLIHPGVYNHTIPGSDVVQTVTRQTMDDDALMFMNSELLMGLMCKNQLGASSMSIAHIV 830
Query: 171 WDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEA 230
+ +G L L ++ + LQR GF++G+ D+ + QE R R
Sbjct: 831 HELYGPHKVGQLFGALGRILSQSLQREGFSIGMDDMCLVQEERRYRQL------------ 878
Query: 231 ACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIE 290
QL EA +P A + +++ T + Q +P ++
Sbjct: 879 -----------------RQLDEAPLYLPDDEAAV---MTKIMEYATK-LQQEFIPGRMMV 917
Query: 291 PFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRA 350
PFP N+L M SGAKGS N Q++ LGQ +G+R M SG+TLP+F +E R+
Sbjct: 918 PFPRNHLLMMTASGAKGSNANATQMALGLGQQLFDGRRVKRMNSGKTLPAFFAHERRARS 977
Query: 351 GGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTV 410
G+ GRF +GI+P E+ H MAGR+GLIDTAVKTSRSG+LQRCL+K LE L VH+D +V
Sbjct: 978 FGYAIGRFTSGIRPPEYTIHAMAGRDGLIDTAVKTSRSGHLQRCLIKGLESLVVHWDHSV 1037
Query: 411 RDSDLSLIQVLYGEDGLDVTKRQYLTDKQFS 441
RDS+ S++Q YG DGLD K LT + S
Sbjct: 1038 RDSNGSIVQFTYGGDGLDPCKASTLTSWEMS 1068
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 74/132 (56%), Gaps = 7/132 (5%)
Query: 533 GSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQ 592
G + E LA+ + + A + D ++ + + + +PGE VG+LAAQ+ GEPSTQ
Sbjct: 1207 GQVQEKLAEK-----RRESIAYYRDVLSELATSRRVKAFCDPGEPVGLLAAQAAGEPSTQ 1261
Query: 593 MTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKS 652
MTLNTFH AG +VT GIPRLRE+L+ A+ ++ ++ +P P E R+ +
Sbjct: 1262 MTLNTFHSAGSTVTHVTEGIPRLRELLIHAS--VQKAAVIVPVEKATPVDESAIARILHA 1319
Query: 653 MTRITMADVLEK 664
I + D L +
Sbjct: 1320 GVAIRLRDCLAR 1331
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 66/122 (54%), Gaps = 3/122 (2%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+ L + DI MA+ +G+E+A R + E+ +F Y VD RHL+L+AD TH GT+
Sbjct: 1667 IKLRQARSTDIRDMANWFGVESAYRTLYDELFKLFKRY--SVDHRHLTLIADAATHRGTW 1724
Query: 946 VAMNRNG-IRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
N G I + S + +MTF + A +G D L++ S+ +M+G+ + GT
Sbjct: 1725 ENFNFTGVISQSASPLFQMTFASSKRWLHTAVSRGLSDELQSISSAIMVGERPKVGTACV 1784
Query: 1005 QL 1006
+L
Sbjct: 1785 KL 1786
>gi|256272995|gb|EEU07959.1| Rpo31p [Saccharomyces cerevisiae JAY291]
gi|349581277|dbj|GAA26435.1| K7_Rpo31p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 1460
Score = 266 bits (680), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 207/686 (30%), Positives = 319/686 (46%), Gaps = 88/686 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + L PK G P+ QD + +S +D+F RA + Q L ++
Sbjct: 528 RAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFYDRAT----LTQLLSMM 583
Query: 73 NTEIRTL---PPTIWKPMPLWTGKQVLS---------TVIINLTPKDKVIIR-HGELLSG 119
+ I PP I KP LWTGKQV S V+INL K+KV + + L
Sbjct: 584 SDGIEHFDIPPPAIMKPYYLWTGKQVFSLLIKPNHNSPVVINLDAKNKVFVPPKSKSLPN 643
Query: 120 ILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFG-STQYGLVHAVWDTHGAEH 178
+ + D V IR ++LSG++DK G ++ + + + +G +
Sbjct: 644 EMSQN--------------DGFVIIRGSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQE 689
Query: 179 AISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLP 238
A + ++ +AKL +L GF++G+ D+ + +K+ +++ A R E
Sbjct: 690 AANAMNRMAKLCARFLGNRGFSIGINDVTPADDLKQKKEELVEIAYRKCDELITLFNKGE 749
Query: 239 LDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQ 298
L+T P Q EA + LL KV + VC+ E ++ + N
Sbjct: 750 LETQPGCNEEQTLEA-------------KIGGLLSKVREEVGDVCINE--LDNW--NAPL 792
Query: 299 FMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRF 358
M G+KGST+N Q+ ++GQ + G R R+LP F +P++ GFV F
Sbjct: 793 IMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTPQSKGFVRNSF 852
Query: 359 MTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLI 418
+G+ P EF FH ++GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR S ++
Sbjct: 853 FSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTSANGIV 912
Query: 419 QVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALL-------- 470
Q YG DGLD + + + +F N W +Y + N K L A++
Sbjct: 913 QFTYGGDGLDPLEMEG-NAQPVNF---NRSWDHAYNITFNNQDKGLLPYAIMETANEILG 968
Query: 471 ----LLLTFKSSG---------KPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKK--- 514
L+ + +SG K ++ + L ++ A RK
Sbjct: 969 PLEERLVRYDNSGCLVKREDLNKAEYVDQYDAERDFYHSLREYINGKATALANLRKSRGM 1028
Query: 515 --FKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLA 572
P + PD ++ +N+ SV + R V KF ++ +K +
Sbjct: 1029 LGLLEPPAKELQGIDPDE---TVPDNVKTSVSQLY--RISEKSVRKFLEIALFKYRKARL 1083
Query: 573 NPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSME 632
PG +G + AQSIGEP TQMTL TFHFAG MNVTLG+PR++EI+ A+K I TP +
Sbjct: 1084 EPGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII-NASKVISTPIIN 1142
Query: 633 IPFLPDMPKLEKKANRLAKSMTRITM 658
+ D +++A R+ K T+
Sbjct: 1143 AVLVNDN---DERAARVVKGRVEKTL 1165
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N + + S GIEAA IIRE+ + +G+ VDPRH+ L+ D MT+ G + + R G+
Sbjct: 1317 NHVLEVFSVLGIEAARYSIIREINYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGL 1376
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
++ S +Q +FE + + A+ ++D++ S ++LGQ GTG F++
Sbjct: 1377 SKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVSECIILGQTMSIGTGSFKV 1430
>gi|340711859|ref|XP_003394485.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like [Bombus
terrestris]
Length = 1385
Score = 266 bits (680), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 213/669 (31%), Positives = 314/669 (46%), Gaps = 88/669 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM S + P++G L QD + G L+ +D FL +A+ L A C+L
Sbjct: 516 RAEALILMGNKSNLVTPRNGELLIAATQDFITGGYLLTQKDMFLNKAQASQL---AGCLL 572
Query: 73 N-----TEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
I P I KP LWTGKQ+ S + L P I+ G + +
Sbjct: 573 AGPDIAMSISLPEPAILKPSMLWTGKQIFSLI---LKPNSTCNIKANLKTKG----RAYT 625
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCL 186
S Q ++ D++V IR+ ELL+G +DK GS ++ + + + G + A + L
Sbjct: 626 SNQELCIN---DSYVIIRNSELLAGTMDKSTLGSGSKQNIFYILLRDWGEDIATIAMWRL 682
Query: 187 AKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEII 246
A++ + +L GF++G+ D+ Q + + K++N TE C L P
Sbjct: 683 ARMASFFLMNRGFSIGIGDVTPGQGLLKAKEKLLNAGYSKCTEYICQMEEGRLVCQPGCS 742
Query: 247 SSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAK 306
+ EA I ++ L + ++ + CL E P+N+ M SG+K
Sbjct: 743 EEETLEA---------MILKE----LSVIRDHAGKACLKE----LHPSNSPLIMALSGSK 785
Query: 307 GSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQE 366
GS +N Q+ +GQ + G R R LP F + P A GFV+ F +G+ P E
Sbjct: 786 GSFINISQMIACVGQQAISGHRVPNGFEDRALPHFERHSKIPAAKGFVENSFYSGLTPTE 845
Query: 367 FFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDG 426
FFFH M GREGL+DTAVKT+ +GY+QR LVK LE L +HYDMTVR+S +IQ+LYG DG
Sbjct: 846 FFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCLHYDMTVRNSVGDIIQILYGGDG 905
Query: 427 LDVTKRQYLTDKQFSFLEDNIKWICSYKVILN-LLKKHPLSLALLLLLTFKSSGKPNFIF 485
LD T Y+ K YK +L+ + K P + P+ I
Sbjct: 906 LDPT---YMEGKDCPV---------DYKRVLDHVTAKSPCK-------NEEPLDGPDLIK 946
Query: 486 SPHRTKFTMD---LLEQWYQ-----LDDKARKKYRKKFKACPQPLISTFQPDAHFGSISE 537
+ + + D L E++ Q L ARK ++ A P + FQ +
Sbjct: 947 ATNELLGSKDCECLSEEFKQELSTFLKGVARKIIHLRYNA-PSNIPVIFQLE-------- 997
Query: 538 NLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNT 597
R S + +F K + + PG VG LAAQSIGEP TQMTL T
Sbjct: 998 ------------RLTVSQLVEFIHTCKEKYMKAKIEPGTAVGALAAQSIGEPGTQMTLKT 1045
Query: 598 FHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRIT 657
FHFAG MN+T G+PR++EI+ A I TP + D+ + A R+ + + T
Sbjct: 1046 FHFAGVASMNITQGVPRIKEII-NANPKISTPIISAALENDVD--PEYARRVKGRIEKTT 1102
Query: 658 MADVLEKVK 666
+ +V E ++
Sbjct: 1103 LGEVTEYIE 1111
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 62/112 (55%), Gaps = 1/112 (0%)
Query: 902 TYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFI 960
T GIEAA I+ E+K V +G+ +D RH LVAD MT G + + R G+ ++ S +
Sbjct: 1249 TLGIEAARATIMTEIKLVMENHGMSIDRRHPMLVADLMTSRGEVLGITRQGLAKMKESVL 1308
Query: 961 QKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNREKK 1012
+FE + + A+ G++D + S +++G GTG+F+L ++ K
Sbjct: 1309 NLASFEKTSDHLFDAAYYGQKDVICGVSESIIMGIPVPVGTGIFKLLHKADK 1360
>gi|393215308|gb|EJD00799.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Fomitiporia mediterranea MF3/22]
Length = 1403
Score = 266 bits (679), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 204/683 (29%), Positives = 323/683 (47%), Gaps = 67/683 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+ EA LM++ + P++G P+ IQD + + LS RD F R ++ + C
Sbjct: 509 RTEALTLMSIKLNLVTPRNGEPVISAIQDFITASFLLSQRDRFFDRQQFAQIC-SYFCDA 567
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ +I PPTI KP LWTGKQ+ + V++ + V++ + S +++ Y
Sbjct: 568 DLQIDIPPPTILKPQRLWTGKQIFN-VLMRPNKRSNVLV---NVESKCNKEQKPDPANYP 623
Query: 133 LVHAVWDT-----HVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCL 186
++ D ++ I + E++ G++DK GS + + + +G + A + ++ +
Sbjct: 624 RMNPAPDLSPNDGYLVIVNSEIMCGVMDKATVGSGKKRSIFGVILRDYGPDEAAAAMNRI 683
Query: 187 AKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEII 246
AKL +L +GF+LG+ D++ + K+I A + A L+ P
Sbjct: 684 AKLCARWLSNIGFSLGINDVIPGPTLSANKDKLIETAYETCIDLIAQAKKGKLENKPGCN 743
Query: 247 SSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAK 306
Q EA S +L KV + + C+ E P M G+K
Sbjct: 744 QEQTLEAMIS-------------GVLSKVRDTVGDTCMKELSRHNAPL----IMATCGSK 786
Query: 307 GSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQE 366
GS +N Q+ +GQ + GKR R+LP F P + GFV F TG+ P E
Sbjct: 787 GSAINVCQMVACVGQQIIAGKRVPDGFQDRSLPHFPKKSKEPPSKGFVRNSFYTGLLPTE 846
Query: 367 FFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDG 426
F FH ++GREGL+DTAVKT+ +GY+QR L+K LE LT YDM+VR+S+ ++Q YG+DG
Sbjct: 847 FLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLTTMYDMSVRNSEGGVVQFQYGDDG 906
Query: 427 LDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFS 486
LD + +E N W + I + + L ++ L+ + S K F+
Sbjct: 907 LD----PGCLEGDAQPVELNRSW-SHARAISSRRGRGLLPYEIIDLVDEELSSKK---FT 958
Query: 487 PHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSIS-ENLADSVVK 545
+ + +L Q+ + D A K PL + + ++ E+ D+
Sbjct: 959 GVCSDTYIAVLRQF--IYDNAVK-----------PLAEQRKEHGMYDALQKEDEWDADTD 1005
Query: 546 YTKGRTDA-------------SHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQ 592
+ G TDA +H+ F + K L + PG VG + AQSIGEP TQ
Sbjct: 1006 LSMGATDAEFKIISNQIKVTHTHLLTFLTLCLKKYLKAKIEPGSTVGAVGAQSIGEPGTQ 1065
Query: 593 MTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKK--ANRLA 650
MTL TFHFAG MNVTLG+PR++EI+ A K I TP + + +M + + RL
Sbjct: 1066 MTLKTFHFAGVASMNVTLGVPRIKEII-NAAKTISTPIISCRLVNNMSEASARIVKGRLE 1124
Query: 651 KSMTRITMADVLEKVKIKEWLEI 673
K++ +A VLE+ E+ I
Sbjct: 1125 KTLLG-DVASVLEEAWAPEYTYI 1146
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 62/115 (53%), Gaps = 2/115 (1%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N I A+ GIEAA II E++ + +G+ +DPRH+ L+ D MT+ G + + R G+
Sbjct: 1270 NHIIETAAVLGIEAARANIINEIQFIMKEHGMSIDPRHVMLLGDVMTYKGEILGITRFGV 1329
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQ-ECRQGTGLFQL 1006
++ S + +FE + + AS G+ DS+ S +++G + GT + L
Sbjct: 1330 AKMKDSVLMLASFEKTTDHLFDASAYGKTDSILGVSESIIMGNPAAKCGTSMPSL 1384
>gi|392592712|gb|EIW82038.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Coniophora puteana RWD-64-598 SS2]
Length = 1407
Score = 266 bits (679), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 201/633 (31%), Positives = 309/633 (48%), Gaps = 56/633 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+ EA LM+V + P++G P+ IQD + + +S RDTF R + Q C L
Sbjct: 509 RTEALELMSVKHNLVTPRNGEPVIAAIQDFITASYLISRRDTFFDRRSFT----QICCYL 564
Query: 73 ---NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGST 129
+ +I PPTIWKP+ LWTGKQ+ + V++ + K+ + + D K +
Sbjct: 565 ADGDLQIDIPPPTIWKPVRLWTGKQIFN-VLMRPNKQSKIFVNVESKCNKPQDAK---AA 620
Query: 130 QYGLVHAVWDTH-----VTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLL 183
Y + + D + + + E++ G++DK GS + + + +G A + +
Sbjct: 621 DYPRMKPLPDLSPNDGWLVVVNSEIMCGVMDKATVGSGKKKSIFGVILRDYGPHEAAAAM 680
Query: 184 SCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDP 243
+ +AKL YL GF+LG+ D++ ++ K+ ++ KA + A L+ P
Sbjct: 681 NRVAKLCARYLANCGFSLGINDVIPGRKLAAKKDDLVEKAYADCLDLIALAKKGKLENKP 740
Query: 244 EIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVES 303
Q EA S S+L KV + + ++C+ E P M S
Sbjct: 741 GCNQEQTLEAMIS-------------SVLSKVRDAVGEICMSELSRHNAPL----IMATS 783
Query: 304 GAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQ 363
G+KGS +N Q+ +GQ + GKR R+LP F P + GFV F +G+
Sbjct: 784 GSKGSVINVSQMVACVGQQIIAGKRVPDGFQDRSLPHFPKKSKEPPSKGFVRNSFYSGLL 843
Query: 364 PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYG 423
P EF FH ++GREGL+DTAVKT+ +GY+QR L+K LE LT YD++VR + ++Q YG
Sbjct: 844 PTEFLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLTTQYDLSVRTATGGVVQFRYG 903
Query: 424 EDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTF--KSSGKP 481
+DGLD + D Q I + S+ ++ + L L +L K P
Sbjct: 904 DDGLDPACLE--GDAQ------PIDFDRSWSHASSIGGRSGLGLLPFQILEIVRKELDTP 955
Query: 482 NF---IFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFG-SISE 537
F + +R L+++ + RK + F+A +P D G S SE
Sbjct: 956 RFKTECTAAYRATIEGFLMDKVVLRMAQIRKSH-GMFEALERPYEWDEDMDLSLGASKSE 1014
Query: 538 N-LADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLN 596
+ D+ K T+ + A F ++ + K + + PG VG + AQSIGEP TQMTL
Sbjct: 1015 RAIVDNHTKVTEAQLRA-----FLELSWSKYVRAKIEPGSTVGAVGAQSIGEPGTQMTLK 1069
Query: 597 TFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
TFHFAG MNVTLG+PR++EI+ A KAI TP
Sbjct: 1070 TFHFAGVASMNVTLGVPRIKEII-NAAKAISTP 1101
Score = 60.1 bits (144), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 58/106 (54%), Gaps = 5/106 (4%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH----SGTYVAMN 949
N + + GIEAA R II E++ + +G+ +DPRH+ L+ D M++ SG + +
Sbjct: 1270 NHVIETSQVLGIEAARRTIINEIQTTMSAHGMTIDPRHVMLLGDIMSYKACCSGEVLGIT 1329
Query: 950 RNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLG 994
R G+ ++ S + +FE + + A+ G+ DS+ S +++G
Sbjct: 1330 RFGVAKMKDSVLMLASFEKTTDHLFDAAAFGKNDSIAGVSESIIMG 1375
>gi|410079408|ref|XP_003957285.1| hypothetical protein KAFR_0D05030 [Kazachstania africana CBS 2517]
gi|372463870|emb|CCF58150.1| hypothetical protein KAFR_0D05030 [Kazachstania africana CBS 2517]
Length = 1462
Score = 266 bits (679), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 207/700 (29%), Positives = 318/700 (45%), Gaps = 116/700 (16%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + L PK G P+ QD + +S +D+F RA + L+ +
Sbjct: 529 RAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRATFTQLL-SMMSDG 587
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLS---------TVIINLTPKDKVIIR-HGELLSGILD 122
N + PP I KP LWTGKQ+ S V+INL K+KV I + L +
Sbjct: 588 NLQFDIPPPAIMKPYYLWTGKQLFSLLIKPNHKSPVVINLDAKNKVYIPPKSKSLPNEMS 647
Query: 123 KKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFG-STQYGLVHAVWDTHGAEHAIS 181
+ D V IR +LSG++DK G ++ + + + +G + A +
Sbjct: 648 RN--------------DGFVIIRGSNILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAAN 693
Query: 182 LLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNAL-----G 236
++ ++KL +L GF++G+ D+ + K+ +++ A A C+ L
Sbjct: 694 AMNRMSKLCARFLGNRGFSIGISDVTPADDLKIKKEELVEIAY-----AKCDDLIDSYNK 748
Query: 237 LPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPE--GLIEPFPA 294
L+T P + EA + LL KV + VC+ E L P
Sbjct: 749 GKLETQPGCNEEETLEA-------------KIGGLLSKVREEVGDVCINELDNLNAPL-- 793
Query: 295 NNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFV 354
M G+KGST+N Q+ ++GQ + G R R+LP F +P++ GFV
Sbjct: 794 ----IMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTPQSKGFV 849
Query: 355 DGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSD 414
F +G+ P EF FH ++GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR S
Sbjct: 850 RNSFFSGLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTSS 909
Query: 415 LSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLT 474
++Q YG DGLD + + + + +F N W + + N ++ LL
Sbjct: 910 NGIVQFTYGGDGLDPMEMEG-SAQPVNF---NRSWDHALNITFNNNERG--------LLP 957
Query: 475 FKSSGKPNFIFSPHRTKFT-------------MDLLEQWYQLDDKARKKYRKKFKAC--- 518
++ K N + +P + +D LE Q D A + + K ++
Sbjct: 958 YQVMKKTNEVLNPLEERLVRYDNLGNEVMKEDLDKLEYADQFD--AERDFYKTLRSYIQS 1015
Query: 519 --------------------PQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDK 558
P + + PD +S + D + K T+ V K
Sbjct: 1016 KSDHLAHVRKSRGLLELLSEPGEELQSLHPDERATDVSRSSVDQLCKITE-----KAVLK 1070
Query: 559 FYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREI 618
F ++ K + PG VG + AQSIGEP TQMTL TFHFAG MNVTLG+PR++EI
Sbjct: 1071 FLEIALSKYRKARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEI 1130
Query: 619 LMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITM 658
+ A+K I TP + + + +++A R+ K TM
Sbjct: 1131 I-NASKTISTPIINAVLVNNN---DERAARVVKGRVEKTM 1166
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 67/119 (56%), Gaps = 1/119 (0%)
Query: 889 NKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAM 948
+K N + ++S GIEAA II E+ + +G+ VDPRH+ L+ D MT+ G + +
Sbjct: 1313 SKTVTNHVLEVSSVLGIEAARSSIIGEIDYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGI 1372
Query: 949 NRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
R G+ ++ S +Q +FE + + A+ ++D++ S ++LGQ GTG F++
Sbjct: 1373 TRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDNVEGVSECIILGQTMSIGTGSFKV 1431
>gi|354544265|emb|CCE40988.1| hypothetical protein CPAR2_110260 [Candida parapsilosis]
Length = 1446
Score = 265 bits (678), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 209/669 (31%), Positives = 319/669 (47%), Gaps = 66/669 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + L PK G P+ QD + +S +D+F RA + L+ +
Sbjct: 530 RAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRASLVQLL-SMMSDA 588
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDK-KQFGSTQY 131
+ + PPTI KP+ LWTGKQV S +I P RH +++ + K K F
Sbjct: 589 DIQFDIPPPTIVKPIMLWTGKQVFSLLI---KPN-----RHSKVVINLNAKNKTFHPPAK 640
Query: 132 GLVHAVW--DTHVTIRHGELLSGILDKKQFG-STQYGLVHAVWDTHGAEHAISLLSCLAK 188
GL + D V IR ++LSG++DK G ++ + + + +G + A + ++ +AK
Sbjct: 641 GLPSEMSPNDGFVIIRGSQILSGLMDKSTLGDGKKHSVFYTILRDYGPQEAAAAMNRMAK 700
Query: 189 LFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNAL-----GLPLDTDP 243
L +L GF++G+ D+ E +K+ ++ +A C+ L L+T P
Sbjct: 701 LCARFLGNRGFSIGINDVTPAHELKQKKELMVEQAY-----LKCDQLIDLYNRGKLETQP 755
Query: 244 EIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPE--GLIEPFPANNLQFMV 301
Q EA + LL KV + VC+ E L P M
Sbjct: 756 GCNEEQTLEA-------------KIGGLLSKVREEVGDVCIRELDSLNAPL------IMA 796
Query: 302 ESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTG 361
G+KGST+N Q+ ++GQ + G R R+LP F +P++ GFV F +G
Sbjct: 797 TCGSKGSTLNVSQMVAVVGQQIISGHRVPDGFQDRSLPHFTKNSKTPQSKGFVRNSFFSG 856
Query: 362 IQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVL 421
+ P EF FH ++GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR+S ++Q
Sbjct: 857 LSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSQYDNTVRNSSNGIVQFT 916
Query: 422 YGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKH--PLSLALLLLLTFKS-S 478
YG DGLD + K +F+ +W +Y + N+ K P + L T K
Sbjct: 917 YGGDGLDPYDMEG-DAKPVNFIR---QWDHAYNITYNVNDKPLLPYEIVELADKTLKPLV 972
Query: 479 GKPNFIFSPHRTKFTM----DLLEQWYQ-----LDDKARKKYRKKFKACPQPLISTFQPD 529
K + + +++ + D + +Y+ L +KA K R + + + D
Sbjct: 973 DKVAVVGTESQSEDELVDQKDAEKAFYESVREFLREKAEKLARLRESRGLKAYYNKIHED 1032
Query: 530 AHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEP 589
E ++V + R +F YK + PG VG + AQSIGEP
Sbjct: 1033 EILVDEDEVKLNAVNQLM--RISHRAAKEFMKQCLYKYSRAKVEPGTAVGAIGAQSIGEP 1090
Query: 590 STQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRL 649
TQMTL TFHFAG MNVTLG+PR++EI+ A+K I TP + + D ++ A R+
Sbjct: 1091 GTQMTLKTFHFAGVASMNVTLGVPRIKEII-NASKTISTPIINAVLVNDDDEI---AARV 1146
Query: 650 AKSMTRITM 658
AK T+
Sbjct: 1147 AKGRIEKTL 1155
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 83/155 (53%), Gaps = 13/155 (8%)
Query: 866 KHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 925
K ++ T+GI V + H+L++N++ GIEAA IIRE++ + +G+
Sbjct: 1289 KDVMNTEGI-VGTKTTTNHVLEVNEIL-----------GIEAARGSIIREIEYTMSNHGM 1336
Query: 926 EVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSL 984
VDPRH+ L+ D MT+ G + + R G+ ++ S +Q +FE + + A+ ++D +
Sbjct: 1337 SVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFFMKKDKI 1396
Query: 985 RAPSARVMLGQECRQGTGLFQLRNREKKKKKVEAK 1019
S ++LGQ R GTG F+L +KV K
Sbjct: 1397 EGVSECIILGQTMRVGTGAFKLVKSSNYDEKVLKK 1431
>gi|190407445|gb|EDV10712.1| DNA-directed RNA polymerase III largest subunit [Saccharomyces
cerevisiae RM11-1a]
gi|207341165|gb|EDZ69295.1| YOR116Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259149599|emb|CAY86403.1| Rpo31p [Saccharomyces cerevisiae EC1118]
gi|323331486|gb|EGA72901.1| Rpo31p [Saccharomyces cerevisiae AWRI796]
gi|323352093|gb|EGA84630.1| Rpo31p [Saccharomyces cerevisiae VL3]
Length = 1460
Score = 265 bits (678), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 207/686 (30%), Positives = 318/686 (46%), Gaps = 88/686 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + L PK G P+ QD + +S +D+F RA + Q L ++
Sbjct: 528 RAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFYDRAT----LTQLLSMM 583
Query: 73 NTEIRTL---PPTIWKPMPLWTGKQVLS---------TVIINLTPKDKVIIR-HGELLSG 119
+ I PP I KP LWTGKQV S V+INL K+KV + + L
Sbjct: 584 SDGIEHFDIPPPAIMKPYYLWTGKQVFSLLIKPNHNSPVVINLDAKNKVFVPPKSKSLPN 643
Query: 120 ILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFG-STQYGLVHAVWDTHGAEH 178
+ + D V IR ++LSG++DK G ++ + + + +G +
Sbjct: 644 EMSQN--------------DGFVIIRGSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQE 689
Query: 179 AISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLP 238
A + ++ +AKL +L GF++G+ D+ + +K+ +++ A R E
Sbjct: 690 AANAMNRMAKLCARFLGNRGFSIGINDVTPADDLKQKKEELVEIAYRKCDELITLFNKGE 749
Query: 239 LDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQ 298
L+T P Q EA + LL KV + VC+ E ++ + N
Sbjct: 750 LETQPGCNEEQTLEA-------------KIGGLLSKVREEVGDVCINE--LDNW--NAPL 792
Query: 299 FMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRF 358
M G+KGST+N Q+ ++GQ + G R R+LP F +P++ GFV F
Sbjct: 793 IMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTPQSKGFVRNSF 852
Query: 359 MTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLI 418
+G+ P EF FH ++GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR S ++
Sbjct: 853 FSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTSANGIV 912
Query: 419 QVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALL-------- 470
Q YG DGLD + + + +F N W +Y + N K L A++
Sbjct: 913 QFTYGGDGLDPLEMEG-NAQPVNF---NRSWDHAYNITFNNQDKGLLPYAIMETANEILG 968
Query: 471 ----LLLTFKSSG---------KPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKK--- 514
L+ + +SG K ++ + L ++ A RK
Sbjct: 969 PLEERLVRYDNSGCLVKREDLNKAEYVDQYDAERDFYHSLREYINGKATALANLRKSRGM 1028
Query: 515 --FKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLA 572
P + PD ++ N+ SV + R V KF ++ +K +
Sbjct: 1029 LGLLEPPAKELQGIDPDE---TVPNNVKTSVSQLY--RISEKSVRKFLEIALFKYRKARL 1083
Query: 573 NPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSME 632
PG +G + AQSIGEP TQMTL TFHFAG MNVTLG+PR++EI+ A+K I TP +
Sbjct: 1084 EPGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII-NASKVISTPIIN 1142
Query: 633 IPFLPDMPKLEKKANRLAKSMTRITM 658
+ D +++A R+ K T+
Sbjct: 1143 AVLVNDN---DERAARVVKGRVEKTL 1165
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N + + S GIEAA IIRE+ + +G+ VDPRH+ L+ D MT+ G + + R G+
Sbjct: 1317 NHVLEVFSVLGIEAARYSIIREINYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGL 1376
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
++ S +Q +FE + + A+ ++D++ S ++LGQ GTG F++
Sbjct: 1377 SKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVSECIILGQTMSIGTGSFKV 1430
>gi|162944844|gb|ABY20491.1| LD04803p [Drosophila melanogaster]
Length = 1410
Score = 265 bits (678), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 203/646 (31%), Positives = 298/646 (46%), Gaps = 114/646 (17%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM S + PK+G L QD + G L+ ++ FLT+ E M L A C L
Sbjct: 542 RAEALILMGNQSNLVTPKNGEILIAATQDFITGGYLLTQKEVFLTKEEAMQL---AACFL 598
Query: 73 NTEIRTL-----PPTIWKPMPLWTGKQVLSTVI---------INLTPKDKVIIRHGELLS 118
E T+ PP + KP LWTGKQ+ S ++ +N+ K + R+ +L S
Sbjct: 599 ANEDSTMHIKLPPPALLKPRRLWTGKQMFSLLMRPNDDSQVRLNMVNKSRNYTRNKDLCS 658
Query: 119 GILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAE 177
D+ + IR+ EL+ G++DK GS T+ + + + G
Sbjct: 659 N-------------------DSWIHIRNSELMCGVMDKATMGSGTKQCIFYLLLRDFGES 699
Query: 178 HAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL 237
HA + LA++ + +LQ GF+ G+ D+ ++ + + ++N A CN
Sbjct: 700 HATKAMWRLARIASYFLQNRGFSFGISDVTPSKKLLQHKELLLNNGY-----AKCN---- 750
Query: 238 PLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNL 297
E I +L +A Q + +S++ + + I + E P N+
Sbjct: 751 ------EYI--ELLKAGTLQCQPGCTPEETLESVMLRELSAIREQAAKTCFAELHPTNSA 802
Query: 298 QFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGR 357
M SG+KGS +N Q+ +GQ + GKR R LP F + P A GFV
Sbjct: 803 LIMALSGSKGSNINISQMIACVGQQAISGKRVPNGFENRALPHFERHSAIPAARGFVQNS 862
Query: 358 FMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSL 417
F +G+ P EFFFH MAGREGL+DTAVKT+ +GYLQR LVK LE L VHYD TVR++ +
Sbjct: 863 FYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYLQRRLVKCLEDLVVHYDGTVRNAVNEM 922
Query: 418 IQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHP-----------LS 466
+ +YG DGLD +E K + NL +HP +S
Sbjct: 923 VDTIYGGDGLDPVS-----------METRNKPVDLVHQYDNLRAQHPQGKDRPLNAEEMS 971
Query: 467 LALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKA---RKKYRKKFKACPQPLI 523
AL LL F+ R F +D+ + + +K+Y K C Q
Sbjct: 972 EALETLLRTPE-------FAEARDDFKLDVRNHINTVSKRIGQLQKRYEKCIDLCHQ--- 1021
Query: 524 STFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAA 583
I + ++++ + ++ Y+ ++ PG VG +AA
Sbjct: 1022 -----------IECLTTEQLLQFVR------RINDRYNR-------AVTEPGTAVGAIAA 1057
Query: 584 QSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
QSIGEP TQMTL TFHFAG MN+T G+PR+ EI+ ATK I TP
Sbjct: 1058 QSIGEPGTQMTLKTFHFAGVASMNITQGVPRIVEII-NATKTISTP 1102
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 68/122 (55%), Gaps = 1/122 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N+I + T GIEAA +I+ E+ V +G+ VD RH+ L+A MT G + + R+G+
Sbjct: 1269 NNICEIYQTLGIEAARTIIMSEITEVMEGHGMSVDWRHIMLLASQMTARGEVLGITRHGL 1328
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNREKK 1012
++ S +FE + + A+ G+ D++ S R++LG GTG+F+L + +
Sbjct: 1329 AKMRESVFNLASFEKTADHLFDAAYYGQTDAINGVSERIILGMPACIGTGIFKLLQQHED 1388
Query: 1013 KK 1014
K+
Sbjct: 1389 KQ 1390
>gi|342320897|gb|EGU12835.1| DNA-directed RNA polymerase [Rhodotorula glutinis ATCC 204091]
Length = 1804
Score = 265 bits (677), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 204/697 (29%), Positives = 329/697 (47%), Gaps = 80/697 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+ EA LMN+ + P++G P+ QD + ++ RDTF R E++ + L
Sbjct: 868 RTEAFQLMNIKRNLVTPRNGEPIIAATQDFITGCYLITRRDTFFNRQEFVQMC-SYLQDA 926
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVL---------STVIINLTPKDKVIIRHGELLSGILDK 123
EI PPTI KP LWTGKQV S V +NL K+K
Sbjct: 927 ELEIELPPPTILKPERLWTGKQVFNVLMRPNKDSPVNVNLECKNKT-------------- 972
Query: 124 KQFG--STQYGLVH----AVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTH-GA 176
FG ST++ + + +V D ++ +++ E++SG+ DK G V AV G
Sbjct: 973 --FGKPSTEFDMSYPNFMSVNDGYLVVQNSEIISGVFDKSTVGDGNKKSVFAVIQRDFGE 1030
Query: 177 EHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALG 236
+HA ++ +AKL +L GF++G+ D+ + ++ ++ +A E A
Sbjct: 1031 DHAAKCMNRMAKLCARWLANKGFSIGISDVTPGERLKAEKDDLVRRAYGQADEYIEKAAR 1090
Query: 237 LPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANN 296
L+ P S L++ S+ L +V + + ++C+ E NN
Sbjct: 1091 GKLECQP---GSNLEQTLESL----------ISGDLSRVRDQVGEICMTE-----LSRNN 1132
Query: 297 LQF-MVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVD 355
M G+KGS +N Q+ +GQ + G R R+LP F + P A GFV
Sbjct: 1133 APLIMATCGSKGSKINVSQMVACVGQQIIAGHRVPNGFQDRSLPHFPKGAIDPLAKGFVS 1192
Query: 356 GRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDL 415
F +G++ EF FH ++GREGL+DTAVKT+ +GY+ R L+K LE L+ YD +VR++
Sbjct: 1193 NSFYSGLRATEFLFHAISGREGLVDTAVKTAETGYMARRLMKALEDLSSRYDRSVRNATG 1252
Query: 416 SLIQVLYGEDGLD-----------VTKRQYLTDK-------QFSFLEDNIKWICSYKVIL 457
++Q +YG+DGLD V +R + + + E + + + ++ +
Sbjct: 1253 GVVQFIYGDDGLDPANLEGDGKPVVFERTWAHARVSSPSSPPPAVHEFDGFFAQALRLDV 1312
Query: 458 NLLKKHPLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKA 517
N P + L+ + + P F S +F +L E Q + KYR+++
Sbjct: 1313 NEEGLLPYEINRLVA---EKTATPYFTNSCSE-EFLRELREFVDQQIAQQAAKYREEY-G 1367
Query: 518 CPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGEN 577
P L + + FG + A + K + + +++F + + K + + PG
Sbjct: 1368 MPPALAPLKRNQSKFG--KADAAMQAIVNNKTKVTVTQIEEFLQLCWTKFVKAKIEPGSA 1425
Query: 578 VGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLP 637
VG + AQSIGEP TQMTL TFHFAG MNVTLG+PR++EI+ A K I TP +
Sbjct: 1426 VGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII-NAAKTISTPIISAKLFQ 1484
Query: 638 DMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEIS 674
D KLE+ A + + + + DV ++ LE++
Sbjct: 1485 D--KLEQAARIVKGRVEKTYLGDVSHRLITLVSLELT 1519
Score = 60.1 bits (144), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 13/137 (9%)
Query: 859 LFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKN 918
L E + + ++ TDG+ + ++ H++++ K+ GIEAA + II ++
Sbjct: 1639 LVEGEGLREVMVTDGV-IGTQTKSNHVMEVEKVL-----------GIEAARKTIIDQIHY 1686
Query: 919 VFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASM 977
+G+ VDPRHL L+ D M G + + R G+ ++ S + +FE + + AS
Sbjct: 1687 TMDSHGLGVDPRHLMLLGDVMCFKGEVLGITRFGVSKMKDSVLMLASFEKTTDHLFDASF 1746
Query: 978 QGREDSLRAPSARVMLG 994
R D ++ S ++LG
Sbjct: 1747 NARRDPIQGVSECIILG 1763
>gi|281360912|ref|NP_001096987.2| CG17209 [Drosophila melanogaster]
gi|272506113|gb|ABW09418.2| CG17209 [Drosophila melanogaster]
Length = 1383
Score = 265 bits (677), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 203/646 (31%), Positives = 298/646 (46%), Gaps = 114/646 (17%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM S + PK+G L QD + G L+ ++ FLT+ E M L A C L
Sbjct: 515 RAEALILMGNQSNLVTPKNGEILIAATQDFITGGYLLTQKEVFLTKEEAMQL---AACFL 571
Query: 73 NTEIRTL-----PPTIWKPMPLWTGKQVLSTVI---------INLTPKDKVIIRHGELLS 118
E T+ PP + KP LWTGKQ+ S ++ +N+ K + R+ +L S
Sbjct: 572 ANEDSTMHIKLPPPALLKPRRLWTGKQMFSLLMRPNDDSQVRLNMVNKGRNYTRNKDLCS 631
Query: 119 GILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAE 177
D+ + IR+ EL+ G++DK GS T+ + + + G
Sbjct: 632 N-------------------DSWIHIRNSELMCGVMDKATMGSGTKQCIFYLLLRDFGES 672
Query: 178 HAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL 237
HA + LA++ + +LQ GF+ G+ D+ ++ + + ++N A CN
Sbjct: 673 HATKAMWRLARIASYFLQNRGFSFGISDVTPSKKLLQHKELLLNNGY-----AKCN---- 723
Query: 238 PLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNL 297
E I +L +A Q + +S++ + + I + E P N+
Sbjct: 724 ------EYI--ELLKAGTLQCQPGCTPEETLESVMLRELSAIREQAAKTCFAELHPTNSA 775
Query: 298 QFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGR 357
M SG+KGS +N Q+ +GQ + GKR R LP F + P A GFV
Sbjct: 776 LIMALSGSKGSNINISQMIACVGQQAISGKRVPNGFENRALPHFERHSAIPAARGFVQNS 835
Query: 358 FMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSL 417
F +G+ P EFFFH MAGREGL+DTAVKT+ +GYLQR LVK LE L VHYD TVR++ +
Sbjct: 836 FYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYLQRRLVKCLEDLVVHYDGTVRNAVNEM 895
Query: 418 IQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHP-----------LS 466
+ +YG DGLD +E K + NL +HP +S
Sbjct: 896 VDTIYGGDGLDPVS-----------METRNKPVDLVHQYDNLRAQHPQGKDRPLNAEEMS 944
Query: 467 LALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKA---RKKYRKKFKACPQPLI 523
AL LL F+ R F +D+ + + +K+Y K C Q
Sbjct: 945 EALETLLRTPE-------FAEARDDFKLDVRNHINTVSKRIGQLQKRYEKCIDLCHQ--- 994
Query: 524 STFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAA 583
I + ++++ + ++ Y+ ++ PG VG +AA
Sbjct: 995 -----------IECLTTEQLLQFVR------RINDRYNR-------AVTEPGTAVGAIAA 1030
Query: 584 QSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
QSIGEP TQMTL TFHFAG MN+T G+PR+ EI+ ATK I TP
Sbjct: 1031 QSIGEPGTQMTLKTFHFAGVASMNITQGVPRIVEII-NATKTISTP 1075
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 68/122 (55%), Gaps = 1/122 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N+I + T GIEAA +I+ E+ V +G+ VD RH+ L+A MT G + + R+G+
Sbjct: 1242 NNICEIYQTLGIEAARTIIMSEITEVMEGHGMSVDWRHIMLLASQMTARGEVLGITRHGL 1301
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNREKK 1012
++ S +FE + + A+ G+ D++ S R++LG GTG+F+L + +
Sbjct: 1302 AKMRESVFNLASFEKTADHLFDAAYYGQTDAINGVSERIILGMPACIGTGIFKLLQQHED 1361
Query: 1013 KK 1014
K+
Sbjct: 1362 KQ 1363
>gi|392569146|gb|EIW62320.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Trametes versicolor FP-101664 SS1]
Length = 1403
Score = 265 bits (677), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 203/631 (32%), Positives = 299/631 (47%), Gaps = 52/631 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLV-YQALCI 71
+ EA LM+V + P++G P+ IQD + + LS RDTF R ++ + Y A
Sbjct: 509 RTEALELMSVKHNLVTPRNGEPVIAAIQDFITASFLLSRRDTFFDRRQFTQICSYFADAD 568
Query: 72 LNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQY 131
L +I PP IWKP+ LWTGKQV + V++ + KV + + E DK Q + Y
Sbjct: 569 LQIDIP--PPAIWKPVRLWTGKQVFN-VLMRPNRQSKVFV-NVESKCNKEDKPQ--AACY 622
Query: 132 GLVHAVWDTH-----VTIRHGELLSGILDKKQFGSTQYGLVHAV-WDTHGAEHAISLLSC 185
+ D + I + E++ G++DK GS + V V +G A + ++
Sbjct: 623 PRMRPAPDLSPNDGWLVIVNSEIMCGVMDKATVGSGKKKSVFGVIMRDYGPHEAAAAMNR 682
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNAL------GLPL 239
+AKL YL +GF+LG+ D++ K+ ++ A AAC L GL L
Sbjct: 683 VAKLCARYLANIGFSLGINDVIPGPVLSGKKDSMVEDAY-----AACERLIIRAKKGL-L 736
Query: 240 DTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQF 299
+ P Q EA S +L V N+ ++C+ E P
Sbjct: 737 ENKPGCDQEQTLEAEIS-------------KVLSDVRGNVGEICMKELSRHNAPL----I 779
Query: 300 MVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFM 359
M G+KGS +N Q+ +GQ + G R R+LP F P + GFV F
Sbjct: 780 MATCGSKGSVINVSQMVACVGQQIIAGHRVPDGFQDRSLPHFPKKSRDPPSKGFVRNSFY 839
Query: 360 TGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQ 419
TG+ P EF FH ++GREGL+DTAVKT+ +GY+QR L+K LE L HYD +VR++ ++Q
Sbjct: 840 TGLTPTEFLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLVTHYDSSVRNAVGGVVQ 899
Query: 420 VLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSG 479
YG+DGLD + D Q E + CS L + P L ++ F
Sbjct: 900 FRYGDDGLDPACLE--GDAQPVDYERAWRHACS------LASRAPRGLLPYEIIEFVDHE 951
Query: 480 KPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFG-SISEN 538
++ T + + + + R +K + L + DA ++ +
Sbjct: 952 LSTRKYTTECTAAYLATIRSFISENIAQRLGEVRKRHGMFEALEREDEWDADTDLTMGAS 1011
Query: 539 LADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTF 598
AD K + + F D+ + K + + PG VG + AQSIGEP TQMTL TF
Sbjct: 1012 DADKAAVDNKIKVTEEQLRLFLDVCWTKYVKAKIEPGSTVGAVGAQSIGEPGTQMTLKTF 1071
Query: 599 HFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
HFAG MNVTLG+PR++EI+ A KAI TP
Sbjct: 1072 HFAGVASMNVTLGVPRIKEII-NAAKAISTP 1101
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N + +A GIEAA R II E++ +G+ +DPRH+ L+ D M++ G + + R G+
Sbjct: 1270 NHVIEIAQVLGIEAARRTIINEIQYTMQSHGMSIDPRHVMLLGDVMSYKGEVLGITRFGV 1329
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLG 994
++ S + +FE + + AS G+ DS+ S +++G
Sbjct: 1330 AKMKDSVLMLASFEKTTDHLFDASAYGKTDSIAGVSESIIMG 1371
>gi|384871708|gb|AFI25034.1| FI19733p1 [Drosophila melanogaster]
Length = 1410
Score = 265 bits (677), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 203/646 (31%), Positives = 298/646 (46%), Gaps = 114/646 (17%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM S + PK+G L QD + G L+ ++ FLT+ E M L A C L
Sbjct: 542 RAEALILMGNQSNLVTPKNGEILIAATQDFITGGYLLTQKEVFLTKEEAMQL---AACFL 598
Query: 73 NTEIRTL-----PPTIWKPMPLWTGKQVLSTVI---------INLTPKDKVIIRHGELLS 118
E T+ PP + KP LWTGKQ+ S ++ +N+ K + R+ +L S
Sbjct: 599 ANEDSTMHIKLPPPALLKPRRLWTGKQMFSLLMRPNDDSQVRLNMVNKGRNYTRNKDLCS 658
Query: 119 GILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAE 177
D+ + IR+ EL+ G++DK GS T+ + + + G
Sbjct: 659 N-------------------DSWIHIRNSELMCGVMDKATMGSGTKQCIFYLLLRDFGES 699
Query: 178 HAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL 237
HA + LA++ + +LQ GF+ G+ D+ ++ + + ++N A CN
Sbjct: 700 HATKAMWRLARIASYFLQNRGFSFGISDVTPSKKLLQHKELLLNNGY-----AKCN---- 750
Query: 238 PLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNL 297
E I +L +A Q + +S++ + + I + E P N+
Sbjct: 751 ------EYI--ELLKAGTLQCQPGCTPEETLESVMLRELSAIREQAAKTCFAELHPTNSA 802
Query: 298 QFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGR 357
M SG+KGS +N Q+ +GQ + GKR R LP F + P A GFV
Sbjct: 803 LIMALSGSKGSNINISQMIACVGQQAISGKRVPNGFENRALPHFERHSAIPAARGFVQNS 862
Query: 358 FMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSL 417
F +G+ P EFFFH MAGREGL+DTAVKT+ +GYLQR LVK LE L VHYD TVR++ +
Sbjct: 863 FYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYLQRRLVKCLEDLVVHYDGTVRNAVNEM 922
Query: 418 IQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHP-----------LS 466
+ +YG DGLD +E K + NL +HP +S
Sbjct: 923 VDTIYGGDGLDPVS-----------METRNKPVDLVHQYDNLRAQHPQGKDRPLNAEEMS 971
Query: 467 LALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKA---RKKYRKKFKACPQPLI 523
AL LL F+ R F +D+ + + +K+Y K C Q
Sbjct: 972 EALETLLRTPE-------FAEARDDFKLDVRNHINTVSKRIGQLQKRYEKCIDLCHQ--- 1021
Query: 524 STFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAA 583
I + ++++ + ++ Y+ ++ PG VG +AA
Sbjct: 1022 -----------IECLTTEQLLQFVR------RINDRYNR-------AVTEPGTAVGAIAA 1057
Query: 584 QSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
QSIGEP TQMTL TFHFAG MN+T G+PR+ EI+ ATK I TP
Sbjct: 1058 QSIGEPGTQMTLKTFHFAGVASMNITQGVPRIVEII-NATKTISTP 1102
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 68/122 (55%), Gaps = 1/122 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N+I + T GIEAA +I+ E+ V +G+ VD RH+ L+A MT G + + R+G+
Sbjct: 1269 NNICEIYQTLGIEAARTIIMSEITEVMEGHGMSVDWRHIMLLASQMTARGEVLGITRHGL 1328
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNREKK 1012
++ S +FE + + A+ G+ D++ S R++LG GTG+F+L + +
Sbjct: 1329 AKMRESVFNLASFEKTADHLFDAAYYGQTDAINGVSERIILGMPACIGTGIFKLLQQHED 1388
Query: 1013 KK 1014
K+
Sbjct: 1389 KQ 1390
>gi|290999395|ref|XP_002682265.1| predicted protein [Naegleria gruberi]
gi|284095892|gb|EFC49521.1| predicted protein [Naegleria gruberi]
Length = 1426
Score = 265 bits (676), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 206/677 (30%), Positives = 324/677 (47%), Gaps = 86/677 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM++ + PK+G P+ QD + + K++ ++TF RAE+ L + I
Sbjct: 530 KAEAGMLMDILKNLITPKNGDPVISCNQDFLTAAWKMTRKNTFFDRAEFCMLC-SYMGIE 588
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ +I PPTI KP+ LWTGKQ+ S ++ + + + + + D+ +
Sbjct: 589 DKKIDLPPPTILKPIELWTGKQLFSLLVKPNNNTNVFVNFETKAKNYLKDETMCPN---- 644
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFG-STQYGLVHAVWDTHGAEHAISLLSCLAKLFT 191
D +V R+ L+ G LDKK G ++ L + + T G +A + ++ +A++ +
Sbjct: 645 ------DGYVCFRNSYLICGNLDKKILGDGSKSSLFYVLIRTVGPAYAAACMARVARVAS 698
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQ 251
+L GF++G+ D++ + K+ I+++ + E L+ P Q
Sbjct: 699 RWLMNYGFSIGIDDVMPSAQLTEKKKMILSEGYAVCDEYIKLYKDGKLEPQPGCNMEQTL 758
Query: 252 EAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPE--GLIEPFPANNLQFMVESGAKGST 309
EA +++R+ L ++ +CL E L P M G+KGS
Sbjct: 759 EA---------KLNRE----LSEIRGRAGSMCLDELHWLNAPLT------MSVCGSKGSV 799
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ +GQ + G R A RTLP F + P A GFV F TG+ P EFFF
Sbjct: 800 INISQMIACVGQQTVGGTRIANGFMNRTLPHFPMFARDPAAKGFVSNSFFTGLTPTEFFF 859
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H M GREG++DTAVKT+ +GY+QR L+K LE L V YD +VR +D ++IQ YG+DG+D
Sbjct: 860 HTMGGREGIVDTAVKTAETGYMQRRLMKALEDLFVAYDGSVRSADNTVIQFKYGDDGMD- 918
Query: 430 TKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPHR 489
+ + + S N ++ ++ +NL K +L +P
Sbjct: 919 ---PHRMESEESGRPLNFTFVMMHEKNINLPTKDEKAL------------------TPDE 957
Query: 490 TKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHF------------GSISE 537
+ +D L +K + KF +STF + F SI +
Sbjct: 958 IRQKLDSF-----LKEKESNIFSDKFID----ELSTFTNNYIFKLENLLKGVAAANSIRD 1008
Query: 538 ----NLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQM 593
N + VV Y + TD + F+ K +LA PGE VG +A QSIGEP+TQM
Sbjct: 1009 ENENNAWEKVVHYIEKITD-RQLTSFFRACRSKYFRALAEPGEPVGGIAGQSIGEPTTQM 1067
Query: 594 TLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP----SMEIPFLPDMPKLEKKANRL 649
TL TFHFAG MNVTLG+PR++EI+ ATK I TP ++ P + E A +
Sbjct: 1068 TLKTFHFAGVASMNVTLGVPRIKEII-DATKNISTPIITAYLDTPLTATKKQKEMAARVV 1126
Query: 650 AKSMTRITMADVLEKVK 666
+ + T+ V+ ++
Sbjct: 1127 KGRIEKTTLGQVVNYIR 1143
Score = 72.8 bits (177), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 66/114 (57%), Gaps = 1/114 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNG- 952
N+I ++ T GIE+A ++I+ E+K YG+ +D RH+ L+AD MT G + R+G
Sbjct: 1285 NNIIEISQTLGIESARQLIMDEIKYTTGSYGMNIDTRHIKLLADIMTFKGDIFGIQRHGI 1344
Query: 953 IRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
I++ S ++ +FE + + +A+ R D + S +++G GTGLF+L
Sbjct: 1345 IKIRDSVLKMASFEQTTDHLFEAASHTRVDDVNGVSECIIMGVPIPIGTGLFRL 1398
>gi|195355413|ref|XP_002044186.1| GM22579 [Drosophila sechellia]
gi|194129475|gb|EDW51518.1| GM22579 [Drosophila sechellia]
Length = 1369
Score = 265 bits (676), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 201/637 (31%), Positives = 298/637 (46%), Gaps = 96/637 (15%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM S + PK+G L QD + G L+ ++ FLT+ E M L A C L
Sbjct: 501 RAEALILMGNQSNLVTPKNGEILIAATQDFITGGYLLTQKEVFLTKEEAMQL---AACFL 557
Query: 73 NTEIRTL-----PPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
E T+ PP + KP LWTGKQ+ S + + P D +R L+ + + +
Sbjct: 558 ANEDSTMHIKLPPPALLKPRRLWTGKQMFSLL---MRPNDDSQVR----LNMVNKGRNYT 610
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCL 186
+ + W + IR+ EL+ G++DK GS T+ + + + G HA + L
Sbjct: 611 GNKDLCSNDSW---IHIRNSELMCGVMDKATMGSGTKQCIFYLLLRDFGELHATKAMWRL 667
Query: 187 AKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEII 246
A++ + +LQ GF+ G+ D+ ++ + + ++N A CN +D +
Sbjct: 668 ARIASYFLQNRGFSFGISDVTPSKKLLQHKELLLNNGY-----AKCNEY---IDL---LK 716
Query: 247 SSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAK 306
+ LQ P + +S++ + + I + E P N+ M SG+K
Sbjct: 717 AGTLQCQPGCTP------EETLESVMLRELSAIREQAAKTCFAELHPTNSALIMALSGSK 770
Query: 307 GSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQE 366
GS +N Q+ +GQ + GKR R LP F + P A GFV F +G+ P E
Sbjct: 771 GSNINISQMIACVGQQAISGKRVPNGFENRALPHFERHSAIPAARGFVQNSFYSGLTPTE 830
Query: 367 FFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDG 426
FFFH MAGREGL+DTAVKT+ +GYLQR LVK LE L VHYD TVR++ ++ +YG DG
Sbjct: 831 FFFHTMAGREGLVDTAVKTAETGYLQRRLVKCLEDLVVHYDGTVRNAVNEMVDTIYGGDG 890
Query: 427 LDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHP-----------LSLALLLLLTF 475
LD +E K + NL +HP +S AL LL
Sbjct: 891 LDPVS-----------METRNKPVDLVHQYDNLRAQHPQGKDRPLNAEKMSEALETLLKT 939
Query: 476 KSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKA---RKKYRKKFKACPQPLISTFQPDAHF 532
F+ R F +D+ + + +K+Y K C Q
Sbjct: 940 PE-------FAEARDDFKLDVRNHINTVSKRIGQLQKRYEKCINLCHQ------------ 980
Query: 533 GSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQ 592
I + ++++ + ++ Y+ ++ PG VG +AAQSIGEP TQ
Sbjct: 981 --IECLTTEQLLQFVR------RINDRYNR-------AVTEPGTAVGAIAAQSIGEPGTQ 1025
Query: 593 MTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
MTL TFHFAG MN+T G+PR+ EI+ ATK I TP
Sbjct: 1026 MTLKTFHFAGVASMNITQGVPRIVEII-NATKTISTP 1061
Score = 70.1 bits (170), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N+I + T GIEAA +I+ E+ V +G+ VD RH+ L+A MT G + + R+G+
Sbjct: 1228 NNICEIYQTLGIEAARTIIMSEITEVMEGHGMSVDWRHIMLLASQMTARGEVLGITRHGL 1287
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
++ S +FE + + A+ G+ D++ S R++LG GTG+F+L
Sbjct: 1288 AKMRESVFNLASFEKTADHLFDAAYYGQTDAINGVSERIILGMPACIGTGIFKL 1341
>gi|367014307|ref|XP_003681653.1| hypothetical protein TDEL_0E01990 [Torulaspora delbrueckii]
gi|359749314|emb|CCE92442.1| hypothetical protein TDEL_0E01990 [Torulaspora delbrueckii]
Length = 1460
Score = 265 bits (676), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 209/695 (30%), Positives = 318/695 (45%), Gaps = 99/695 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + L PK G P+ QD + +S +D+F R L+ +
Sbjct: 528 RAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRGSLTQLL-SMMSDG 586
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLS---------TVIINLTPKDKVII--RHGELLSGIL 121
N + P I KP LWTGKQV S V+INL K+KV I + L S +
Sbjct: 587 NLQFDIPAPAIMKPCYLWTGKQVFSLLIKPNKKSPVVINLDAKNKVFIPPKSKSLPSEMS 646
Query: 122 DKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFG-STQYGLVHAVWDTHGAEHAI 180
D +V IR E+LSG++DK G ++ + + + +G + A
Sbjct: 647 QN---------------DGYVIIRGSEILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAA 691
Query: 181 SLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLD 240
+ ++ +AKL YL GF++G+ D+ + +K+ ++ A E + L+
Sbjct: 692 NAMNRMAKLCARYLGNRGFSIGISDVTPADDLKKKKEDMVEFAYAKCDELIDSYNKGKLE 751
Query: 241 TDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPE--GLIEPFPANNLQ 298
T P Q EA + LL KV + VC+ E L P
Sbjct: 752 TQPGCNEEQTLEA-------------KIGGLLSKVREEVGDVCINELDNLNAPL------ 792
Query: 299 FMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRF 358
M G+KGST+N Q+ ++GQ + G R R+LP F +P++ GFV F
Sbjct: 793 IMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTPQSKGFVRNSF 852
Query: 359 MTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLI 418
+G+ P EF FH ++GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR S ++
Sbjct: 853 FSGLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTSSNGIV 912
Query: 419 QVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSS 478
Q YG DGLD + + + +F+ W ++ V N ++ L ++
Sbjct: 913 QFTYGGDGLDPMEMEG-NAQPVNFVR---SWNHAFNVTFNNTERG--------LFPYQIE 960
Query: 479 GKPNFIFSPHRTKFTM------------DLLEQWYQLDDKARKKY--RKKFKACPQPLIS 524
+ + I +P + D L ++ +D R Y K F L++
Sbjct: 961 EETDKILAPLMNRLIRYDNVGKLVPKEKDALIEYIDQNDAERNFYLSLKSFMRGKAELLA 1020
Query: 525 TF-----------QPDAHFGSIS------ENLADSVVKYTKGRTDASHVDKFYDMIFYKN 567
+ +P F +I EN+ SV + R V +F + K
Sbjct: 1021 SVRKQRGMKELLDEPGPEFKNIDFDEDVPENIRHSVDQLC--RITGDSVREFLKIAISKY 1078
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
+ PG VG + AQSIGEP TQMTL TFHFAG MNVTLG+PR++EI+ A+K I
Sbjct: 1079 RRARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII-NASKVIS 1137
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKS-MTRITMADV 661
TP + + D +++A R+ K + + ++DV
Sbjct: 1138 TPIINAVLVNDN---DERAARVVKGRIEKTLLSDV 1169
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 65/119 (54%), Gaps = 1/119 (0%)
Query: 889 NKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAM 948
+K N I + S GIEAA II E+ + +G+ VDPRH+ L+ D MT+ G + +
Sbjct: 1312 HKTATNHILEVFSVLGIEAARASIIGEIDYTMSNHGMSVDPRHIQLLGDVMTYKGEILGI 1371
Query: 949 NRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
R G+ ++ S +Q +FE + + A+ + D++ S ++LGQ GTG F++
Sbjct: 1372 TRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKRDAVEGVSECIILGQTMSIGTGAFKV 1430
>gi|255076723|ref|XP_002502032.1| predicted protein [Micromonas sp. RCC299]
gi|226517297|gb|ACO63290.1| predicted protein [Micromonas sp. RCC299]
Length = 1479
Score = 265 bits (676), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 205/688 (29%), Positives = 333/688 (48%), Gaps = 84/688 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLV-YQALCI 71
+AEA LM+V + PK+G L QD + + L+ RD FL RA+ L+ Y +
Sbjct: 531 RAEAINLMSVHNNLCTPKNGEILVAATQDFLTASYILTARDHFLDRAQVGALIAYMGDAL 590
Query: 72 LNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQY 131
+ ++ T P I KP+ LWTGKQ+ S V+I D+V + L+ + ++
Sbjct: 591 MAVDLPT--PAIIKPVELWTGKQLFS-VLIRPRAVDRVFVN--------LEVAEKNYSKK 639
Query: 132 GLVHAV-WDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
H D +V I++ E++ G L K GS + GL + + +G+E S ++ +AKL
Sbjct: 640 DTRHMCPRDGYVCIQNSEIMCGQLGKATLGSGNKNGLFYVLNSEYGSEQTASCMNRVAKL 699
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
+L GF++G+ D+ ++ K++++ AC+ E I +
Sbjct: 700 SARWLGTRGFSVGIDDVTPGHRLQDEKGKVVDRGY-----GACD----------ERIEAF 744
Query: 250 LQEAYASIPQFRAQ--IDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQF-MVESGAK 306
+ A P A+ ++ + +L V VCL E P +N M G+K
Sbjct: 745 KRGTLALQPGCNAEQTLEAEVLGILSTVRETAGNVCLDE-----LPRHNAPLIMALCGSK 799
Query: 307 GSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQE 366
GST+N Q+ +GQ + G RP + R+LP F E +P A GFV F +G++P E
Sbjct: 800 GSTINISQMVACVGQQAVGGTRPPDGFAERSLPHFKRGEKTPAAKGFVANSFFSGMRPTE 859
Query: 367 FFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDG 426
FFFH MAGREGL+DTAVKT+ +GY+ R L+K LE L++ YD TVR+S ++Q+ YG+DG
Sbjct: 860 FFFHTMAGREGLVDTAVKTAETGYMSRRLMKALEDLSLRYDGTVRNSTGGIVQLSYGDDG 919
Query: 427 LDVTKRQYLTDK--QFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFI 484
++ T+ + + +F L ++K + + L +++A +
Sbjct: 920 MEPTEMEGADAQPVEFPRLLQHVKGLVP-RAGSGLSHSRKIAVAKAEM------------ 966
Query: 485 FSPHRTKFTMDLLEQWYQLDDKARKKYRKKF-KACPQPLISTFQPDAHFGSISENLADSV 543
H M+ + +++ D K++ + L+ +P+ H +++
Sbjct: 967 ---HTRAAAMNNEDGAHKIKDGMSVKFKHDLVRFARANLVRVGKPEGHGVGVTK------ 1017
Query: 544 VKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGR 603
+ +D+F + K PG VG + AQSIGEP TQMTL TFHFAG
Sbjct: 1018 ----------AQLDEFLERCVRKYSAKRIEPGSAVGAVGAQSIGEPGTQMTLKTFHFAGV 1067
Query: 604 GDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKS-MTRITMADVL 662
MNVTLG+PR++EI+ A K I TP + D KA R+ K + + T+ +V
Sbjct: 1068 ASMNVTLGVPRIKEII-NAAKNISTPIITATLECDD---NVKAARVVKGRVEKTTLGEVC 1123
Query: 663 EKVKIKEWLEISPEPHMNYQMKFCFIPA 690
+++++ P Y ++ C PA
Sbjct: 1124 ------KFIDVVYNPSACY-VEVCLDPA 1144
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 66/117 (56%), Gaps = 1/117 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N + T GIEAA II+E+ + +G+ +D RH L+AD MT+ G + + R G+
Sbjct: 1269 NHVMEAERTLGIEAARSCIIKEINDTMKAHGMSIDARHSMLLADVMTYKGEVLGITRFGM 1328
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNR 1009
++ S + +FE + + A++ GR D++ S +++G GTG+F+L++R
Sbjct: 1329 AKMKDSVLMLASFEKTTDHLFDAALHGRTDTIDGVSECIIMGIPMPVGTGMFKLQHR 1385
>gi|365763066|gb|EHN04597.1| Rpo31p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 1460
Score = 265 bits (676), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 206/686 (30%), Positives = 317/686 (46%), Gaps = 88/686 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + L PK G P+ QD + +S +D+F RA + Q L ++
Sbjct: 528 RAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFYDRAT----LTQLLSMM 583
Query: 73 NTEIRTL---PPTIWKPMPLWTGKQVLS---------TVIINLTPKDKVIIR-HGELLSG 119
+ I PP I KP LWTGKQV S V+INL K+KV + + L
Sbjct: 584 SDGIEHFDIPPPAIMKPYYLWTGKQVFSLLIKPNHNSPVVINLDAKNKVFVPPKSKSLPN 643
Query: 120 ILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFG-STQYGLVHAVWDTHGAEH 178
+ + D V IR ++LSG++DK G ++ + + + +G +
Sbjct: 644 EMSQN--------------DGFVIIRGSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQE 689
Query: 179 AISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLP 238
A + ++ +AKL +L GF++G+ D+ + +K+ +++ A R E
Sbjct: 690 AANAMNRMAKLCARFLGNRGFSIGINDVTPADDLKQKKEELVEIAYRKCDELITLFNKGE 749
Query: 239 LDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQ 298
L+T P Q EA + LL KV + VC+ E ++ + N
Sbjct: 750 LETQPGCNEEQTLEA-------------KIGGLLSKVREEVGDVCINE--LDNW--NAPL 792
Query: 299 FMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRF 358
M G+KGST+N Q+ ++GQ + G R R+LP F +P + GFV F
Sbjct: 793 IMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTPZSKGFVRNSF 852
Query: 359 MTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLI 418
+G+ P EF FH ++GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR S ++
Sbjct: 853 FSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTSANGIV 912
Query: 419 QVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALL-------- 470
Q YG DGLD + + + +F N W +Y + N K L A++
Sbjct: 913 QFTYGGDGLDPLEMEG-NAQPVNF---NRSWDHAYNITFNNQDKGLLPYAIMETANEILG 968
Query: 471 ----LLLTFKSSG---------KPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKK--- 514
L+ + +SG K ++ + L ++ A RK
Sbjct: 969 PLEERLVRYDNSGCLVKREDLNKAEYVDQYDAERDFYHSLREYINGKATALANLRKSRGM 1028
Query: 515 --FKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLA 572
P + PD ++ B+ SV + R V KF ++ +K +
Sbjct: 1029 LGLLEPPAKELQGIDPDE---TVPNBVKTSVSQLY--RISEKSVRKFLEIALFKYRKARL 1083
Query: 573 NPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSME 632
PG +G + AQSIGEP TQMTL TFHFAG MNVTLG+PR++EI+ A+K I TP +
Sbjct: 1084 EPGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII-NASKVISTPIIN 1142
Query: 633 IPFLPDMPKLEKKANRLAKSMTRITM 658
+ D +++A R+ K T+
Sbjct: 1143 AVLVNDN---DERAARVVKGRVEKTL 1165
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N + + S GIEAA IIRE+ + +G+ VDPRH+ L+ D MT+ G + + R G+
Sbjct: 1317 NHVLEVFSVLGIEAARYSIIREINYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGL 1376
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
++ S +Q +FE + + A+ ++D++ S ++LGQ GTG F++
Sbjct: 1377 SKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVSECIILGQTMSIGTGSFKV 1430
>gi|407863032|gb|EKG07843.1| DNA-directed rna polymerase I largest subunit, putative [Trypanosoma
cruzi]
Length = 1800
Score = 264 bits (675), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 166/451 (36%), Positives = 233/451 (51%), Gaps = 56/451 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALC-- 70
K E LM+ + YLVP G P+ GLIQDH+ +G L+LRD FL A ++ L Y L
Sbjct: 652 KVELDVLMDANLNYLVPTSGKPIRGLIQDHIAAGVLLTLRDKFLEHATFVQLTYYGLAPY 711
Query: 71 ------ILNTEIRTLPPTIWKPMPLWTGKQVLSTVI-----INLTPKDKVIIRHGELLSG 119
I +E+ LP +W P PLWTGKQ++S VI + P I G L G
Sbjct: 712 LRQQHEITLSELIPLPAILW-PRPLWTGKQLISVVIRYVSGVGRRPDWMRINSGGVSLRG 770
Query: 120 I--LDKKQFGSTQYG--LVHAVW-----DTHVTIRHGELLSGILDKKQFGSTQYGLVHAV 170
+ + + T G ++ V D + + ELL G++ K Q G++ + H V
Sbjct: 771 VSLIHPGVYNHTIPGSDVIQTVTRQTMDDDALMFMNSELLMGLMCKNQLGASSMSIAHIV 830
Query: 171 WDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEA 230
+ +G L L ++ + LQR GF++G+ D+ + QE R R
Sbjct: 831 HELYGPHKVGQLFGALGRILSQSLQREGFSIGMDDMCLVQEERRYRQL------------ 878
Query: 231 ACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIE 290
QL EA +P A + +++ T + Q +P ++
Sbjct: 879 -----------------RQLDEAPLYLPDDEAAV---MTKIMEYATK-LQQEFIPGRMMV 917
Query: 291 PFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRA 350
PFP N+L M SGAKGS N Q++ LGQ +G+R M SG+TLP+F +E R+
Sbjct: 918 PFPRNHLLMMTASGAKGSNANATQMALGLGQQLFDGRRVKRMNSGKTLPAFFAHERRARS 977
Query: 351 GGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTV 410
G+ GRF +GI+P E+ H MAGR+GLIDTAVKTSRSG+LQRCL+K LE L VH+D +V
Sbjct: 978 FGYAIGRFTSGIRPPEYTIHAMAGRDGLIDTAVKTSRSGHLQRCLIKGLESLMVHWDHSV 1037
Query: 411 RDSDLSLIQVLYGEDGLDVTKRQYLTDKQFS 441
RDS+ S++Q YG DGLD K LT + S
Sbjct: 1038 RDSNGSIVQFTYGGDGLDPCKASTLTSWETS 1068
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 74/132 (56%), Gaps = 7/132 (5%)
Query: 533 GSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQ 592
G + E LA+ + + A + D ++ + + + +PGE VG+LAAQ+ GEPSTQ
Sbjct: 1204 GQVQEKLAEK-----RRESIAYYRDVLSELATTRRVKAFCDPGEPVGLLAAQAAGEPSTQ 1258
Query: 593 MTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKS 652
MTLNTFH AG +VT GIPRLRE+L+ A+ ++ ++ +P P E R+ +
Sbjct: 1259 MTLNTFHSAGSTVTHVTEGIPRLRELLIHAS--VQKAAVIVPVEKATPVDESAIARILHA 1316
Query: 653 MTRITMADVLEK 664
I + D L +
Sbjct: 1317 GVAIRLRDCLAR 1328
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 66/122 (54%), Gaps = 3/122 (2%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+ L + DI MA+ +G+E+A R + E+ +F Y VD RHL+L+AD TH GT+
Sbjct: 1665 IKLRQARSTDIRDMANWFGVESAYRTLYDELFKLFKRY--SVDHRHLTLIADAATHRGTW 1722
Query: 946 VAMNRNG-IRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
N G I + S + +MTF + A +G D L++ S+ +M+G+ + GT
Sbjct: 1723 ENFNFTGVISQSASPLFQMTFASSKRWLHTAVSRGLSDELQSISSAIMVGERPKVGTACV 1782
Query: 1005 QL 1006
+L
Sbjct: 1783 KL 1784
>gi|328858469|gb|EGG07581.1| hypothetical protein MELLADRAFT_47986 [Melampsora larici-populina
98AG31]
Length = 1421
Score = 264 bits (674), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 196/652 (30%), Positives = 309/652 (47%), Gaps = 57/652 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+ EA+ LMNV + P++G P+ QD + + LS +D F R ++ + Q L
Sbjct: 533 RTEATELMNVKYNLVTPRNGEPIIAATQDFITASYLLSRKDNFYDRQQFTQAL-QYLSDA 591
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVI-------INLTPKDKVIIRHGELLSGILDKKQ 125
I PP IWKP+ LWTGKQV + ++ + + + K H L + D
Sbjct: 592 TLHIDLPPPVIWKPIRLWTGKQVFNVLMRPNKASPVKVNIEAKCATHHKALPEFLPDMSP 651
Query: 126 FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWD-THGAEHAISLLS 184
D + I++ E++ G++DK G + + AV + +G + A+ ++
Sbjct: 652 N------------DGWLVIQNSEIMCGVVDKAIVGGGKKDSIFAVINRDYGPDEAVKAMN 699
Query: 185 CLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPE 244
LAK+ +L +GF++GV D+ + ++ ++ KA + + ++ L T P
Sbjct: 700 RLAKVSARWLANMGFSIGVGDVTPGERLSTQKESLVAKAYKETNDLIKSSKAGQLQTLPG 759
Query: 245 IISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESG 304
Q EA S +L KV +++ +C+ E P M G
Sbjct: 760 RDQDQTLEAMIS-------------GVLSKVRDSLGVICMAELTRHNAPL----IMATCG 802
Query: 305 AKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQP 364
+KGST+N Q+ +GQ + G R R+LP F P A GFV F +G++
Sbjct: 803 SKGSTINVAQMVACVGQQIISGNRIPDGFQDRSLPHFHKKAKEPPAKGFVRNSFHSGLRA 862
Query: 365 QEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGE 424
EF FH ++GREGL+DTAVKT+ +GY+QR L+K LE L+ YD +VR+S ++Q YG+
Sbjct: 863 TEFLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLSTRYDDSVRNSVGGVVQFTYGD 922
Query: 425 DGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFI 484
DGLD T YL + +E W S K ++ L L ++ K +P F
Sbjct: 923 DGLDPT---YL-EGDGEPVEFARTWRHS-KATISHLDGRGLYPYEIVQTVAKRLAEPRFA 977
Query: 485 FSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLA---- 540
T+FT +L K YR + P + D + ++ A
Sbjct: 978 -KACTTRFTDSVLNFITNSVAKPAATYRASYGMYP-----AMEMDGDWDEETDLSAGVTG 1031
Query: 541 DSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHF 600
+ + K + +D F D + K + + PG VG + AQSIGEP TQMTL TFHF
Sbjct: 1032 NKKIVANKTQVTLKQIDTFLDYCWVKYVKAKVEPGTAVGAVGAQSIGEPGTQMTLKTFHF 1091
Query: 601 AGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKS 652
AG MN+TLG+PR++EI+ A+K I P + P + + ++A R+ K+
Sbjct: 1092 AGVASMNITLGVPRIKEII-NASKVINGPIINAPLVANQ---SERAARIVKA 1139
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 5/104 (4%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N I S GIEA II+E+ +G++VDPRH+ L+ D M + G + + R G+
Sbjct: 1289 NHIMEAQSILGIEAGRNCIIKEISYTMDSHGLKVDPRHMMLLGDIMCYKGEVLGITRFGV 1348
Query: 954 ---RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLG 994
+ + SF +FE + + A++ + D++ S +++G
Sbjct: 1349 AKMKDSASFFS--SFEKTTDHLFDAALYSKRDAIEGVSECIIMG 1390
>gi|366996196|ref|XP_003677861.1| hypothetical protein NCAS_0H02040 [Naumovozyma castellii CBS 4309]
gi|342303731|emb|CCC71514.1| hypothetical protein NCAS_0H02040 [Naumovozyma castellii CBS 4309]
Length = 1460
Score = 264 bits (674), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 204/670 (30%), Positives = 301/670 (44%), Gaps = 111/670 (16%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + L PK G P+ QD + +S +D+F RA L+ +
Sbjct: 528 RAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRATLTQLLSM---MS 584
Query: 73 NTEIR--TLPPTIWKPMPLWTGKQVLS---------TVIINLTPKDKVIIRHGELLSGIL 121
N +R PP I KP +WTGKQV S V+INL K+KV +
Sbjct: 585 NGTLRFDIPPPAIMKPYYMWTGKQVFSLLIRPNKESPVVINLDAKNKVFMPPK------- 637
Query: 122 DKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFG-STQYGLVHAVWDTHGAEHAI 180
Y + D +V IR +LSG++DK G ++ + + + +G + A
Sbjct: 638 ------YKDYPNEMSRNDGYVVIRGSNILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAA 691
Query: 181 SLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNAL----- 235
+ ++ ++KL YL GF++G+ D+ + +K+ +++ A A C+ L
Sbjct: 692 NAMNRMSKLCARYLGNRGFSIGISDVTPADDLKQKKEELVEIAY-----AKCDELIDQFH 746
Query: 236 GLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPE--GLIEPFP 293
L+T P Q EA + LL KV + VC+ E L P
Sbjct: 747 KGKLETQPGCNEEQTLEA-------------KIGGLLSKVREEVGDVCINELDNLNAPL- 792
Query: 294 ANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGF 353
M G+KGST+N Q+ ++GQ + G R R+LP F +P++ GF
Sbjct: 793 -----IMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFQKNSKTPQSKGF 847
Query: 354 VDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDS 413
V F +G+ P EF FH ++GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR S
Sbjct: 848 VRNSFFSGLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTS 907
Query: 414 DLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLL 473
++Q YG DGLD + + K +F N W + + + L+K LL
Sbjct: 908 SNGIVQFTYGGDGLDPMEMEG-NAKPVNF---NRSWDHAINITFSNLEKG--------LL 955
Query: 474 TFKSSGKPNFIFSPHRTKFT-MDLLEQWYQLDDKARKKYRKKFKA--------------- 517
++ K N I P + D + + D + +Y +F A
Sbjct: 956 PYEIMEKTNEILKPLEERLIRYDNVGELVPKKDNEKAEYVDQFDAERDFYRSLRDYIQEK 1015
Query: 518 ------------------CPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKF 559
P + PD ++ D + K T+ V F
Sbjct: 1016 ADILARVRKSRGMLEMSSEPGEELRKLDPDERITESIKHSVDQLYKITE-----KSVQTF 1070
Query: 560 YDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREIL 619
++ YK + PG VG + AQSIGEP TQMTL TFHFAG MNVTLG+PR++EI+
Sbjct: 1071 LEIALYKYRKARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII 1130
Query: 620 MMATKAIKTP 629
A+K I TP
Sbjct: 1131 -NASKVISTP 1139
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 76/142 (53%), Gaps = 13/142 (9%)
Query: 866 KHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 925
+ ++ TDG+ + + H+L++N + GIEAA II E+ + +G+
Sbjct: 1301 RDVMCTDGV-IGMKTTTNHILEVNNVL-----------GIEAARSSIIGEIDYTMSNHGM 1348
Query: 926 EVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSL 984
VDPRH+ L+ D MT+ G + + R G+ ++ S +Q +FE + + A+ ++D++
Sbjct: 1349 SVDPRHIQLLGDVMTYKGEILGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAV 1408
Query: 985 RAPSARVMLGQECRQGTGLFQL 1006
S ++LGQ GTG F++
Sbjct: 1409 EGVSECIILGQTMSIGTGSFKV 1430
>gi|6324690|ref|NP_014759.1| Rpo31p [Saccharomyces cerevisiae S288c]
gi|133356|sp|P04051.1|RPC1_YEAST RecName: Full=DNA-directed RNA polymerase III subunit RPC1; Short=RNA
polymerase III subunit C1; AltName: Full=DNA-directed RNA
polymerase III largest subunit; AltName: Full=RNA
polymerase III subunit C160
gi|4400|emb|CAA26905.1| RNA polymerase III largest subunit [Saccharomyces cerevisiae]
gi|1050828|emb|CAA62123.1| ORF O3254 [Saccharomyces cerevisiae]
gi|1164961|emb|CAA64036.1| YOR3254c [Saccharomyces cerevisiae]
gi|1420309|emb|CAA99314.1| RPO31 [Saccharomyces cerevisiae]
gi|151945738|gb|EDN63979.1| RNA polymerase C [Saccharomyces cerevisiae YJM789]
gi|285814998|tpg|DAA10891.1| TPA: Rpo31p [Saccharomyces cerevisiae S288c]
gi|392296445|gb|EIW07547.1| Rpo31p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 1460
Score = 264 bits (674), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 206/686 (30%), Positives = 318/686 (46%), Gaps = 88/686 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + L PK G P+ QD + +S +D+F RA + Q L ++
Sbjct: 528 RAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFYDRAT----LTQLLSMM 583
Query: 73 NTEIRTL---PPTIWKPMPLWTGKQVLS---------TVIINLTPKDKVIIR-HGELLSG 119
+ I PP I KP LWTGKQV S V+INL K+KV + + L
Sbjct: 584 SDGIEHFDIPPPAIMKPYYLWTGKQVFSLLIKPNHNSPVVINLDAKNKVFVPPKSKSLPN 643
Query: 120 ILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFG-STQYGLVHAVWDTHGAEH 178
+ + D V IR ++LSG++DK G ++ + + + +G +
Sbjct: 644 EMSQN--------------DGFVIIRGSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQE 689
Query: 179 AISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLP 238
A + ++ +AKL +L GF++G+ D+ + +K+ +++ A E
Sbjct: 690 AANAMNRMAKLCARFLGNRGFSIGINDVTPADDLKQKKEELVEIAYHKCDELITLFNKGE 749
Query: 239 LDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQ 298
L+T P Q EA + LL KV + VC+ E ++ + N
Sbjct: 750 LETQPGCNEEQTLEA-------------KIGGLLSKVREEVGDVCINE--LDNW--NAPL 792
Query: 299 FMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRF 358
M G+KGST+N Q+ ++GQ + G R R+LP F +P++ GFV F
Sbjct: 793 IMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTPQSKGFVRNSF 852
Query: 359 MTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLI 418
+G+ P EF FH ++GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR S ++
Sbjct: 853 FSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTSANGIV 912
Query: 419 QVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALL-------- 470
Q YG DGLD + + + +F N W +Y + N K L A++
Sbjct: 913 QFTYGGDGLDPLEMEG-NAQPVNF---NRSWDHAYNITFNNQDKGLLPYAIMETANEILG 968
Query: 471 ----LLLTFKSSG---------KPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKK--- 514
L+ + +SG K ++ + L ++ A RK
Sbjct: 969 PLEERLVRYDNSGCLVKREDLNKAEYVDQYDAERDFYHSLREYINGKATALANLRKSRGM 1028
Query: 515 --FKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLA 572
P + PD ++ +N+ SV + R V KF ++ +K +
Sbjct: 1029 LGLLEPPAKELQGIDPDE---TVPDNVKTSVSQLY--RISEKSVRKFLEIALFKYRKARL 1083
Query: 573 NPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSME 632
PG +G + AQSIGEP TQMTL TFHFAG MNVTLG+PR++EI+ A+K I TP +
Sbjct: 1084 EPGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII-NASKVISTPIIN 1142
Query: 633 IPFLPDMPKLEKKANRLAKSMTRITM 658
+ D +++A R+ K T+
Sbjct: 1143 AVLVNDN---DERAARVVKGRVEKTL 1165
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N + + S GIEAA IIRE+ + +G+ VDPRH+ L+ D MT+ G + + R G+
Sbjct: 1317 NHVLEVFSVLGIEAARYSIIREINYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGL 1376
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
++ S +Q +FE + + A+ ++D++ S ++LGQ GTG F++
Sbjct: 1377 SKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVSECIILGQTMSIGTGSFKV 1430
>gi|448520288|ref|XP_003868270.1| Rpo31 protein [Candida orthopsilosis Co 90-125]
gi|380352609|emb|CCG22836.1| Rpo31 protein [Candida orthopsilosis]
Length = 1443
Score = 264 bits (674), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 210/676 (31%), Positives = 317/676 (46%), Gaps = 80/676 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + L PK G P+ QD + +S +D+F RA + L+ +
Sbjct: 527 RAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRASLVQLL-SMMSDA 585
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + PP I KP+ LWTGKQV S ++I + KV+I K F G
Sbjct: 586 DIQFDIPPPAIMKPVMLWTGKQVFS-LLIKPNRQSKVVINLNA------KNKTFHPPAKG 638
Query: 133 LVHAVW--DTHVTIRHGELLSGILDKKQFG-STQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L + D V IR ++LSG++DK G ++ + + + +G + A + ++ +AKL
Sbjct: 639 LPSEMSPNDGFVLIRGSQILSGLMDKSTLGDGKKHSVFYTILRDYGPQEAAAAMNRMAKL 698
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNAL-----GLPLDTDPE 244
+L GF++G+ D+ E +K+ ++ +A C+ L L+T P
Sbjct: 699 CARFLGNRGFSIGINDVTPAHELKQKKELMVEQAY-----LKCDQLIDLYNRGKLETQPG 753
Query: 245 IISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPE--GLIEPFPANNLQFMVE 302
Q EA + LL KV + VC+ E L P M
Sbjct: 754 CNEEQTLEA-------------KIGGLLSKVREEVGDVCIRELDSLNAPL------IMAT 794
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
G+KGST+N Q+ ++GQ + G R R+LP F +P++ GFV F +G+
Sbjct: 795 CGSKGSTLNVSQMVAVVGQQIISGHRVPDGFQDRSLPHFTKNSKTPQSKGFVRNSFFSGL 854
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
P EF FH ++GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR+S ++Q Y
Sbjct: 855 SPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSQYDNTVRNSSNGIVQFTY 914
Query: 423 GEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPN 482
G DGLD + K +F+ +W +Y V N+ K LL ++ + +
Sbjct: 915 GGDGLDPYDMEG-DAKPVNFVR---QWDHAYNVTYNVNDKP--------LLPYEINELAD 962
Query: 483 FIFSPHRTKFTM---------DLLEQ------WYQ-----LDDKARKKYRKKFKACPQPL 522
P K + +L++Q +Y+ L DKA R + Q
Sbjct: 963 KTLKPLVDKLAVVSDEVQNKDELVDQKDAERAFYESVREFLRDKAETLARLRESRGLQAF 1022
Query: 523 ISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLA 582
+ D E ++V + K A+ +F YK + PG VG +
Sbjct: 1023 YTRVNEDDIQLDEDEAKINAVNQLLKISHRAAK--EFMKQCLYKYSRAKVEPGTAVGAIG 1080
Query: 583 AQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKL 642
AQSIGEP TQMTL TFHFAG MNVTLG+PR++EI+ A+K I TP + + D ++
Sbjct: 1081 AQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII-NASKTISTPIINAVLVNDDDEI 1139
Query: 643 EKKANRLAKSMTRITM 658
A R+AK T+
Sbjct: 1140 ---AARVAKGRIEKTL 1152
Score = 73.6 bits (179), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 77/142 (54%), Gaps = 13/142 (9%)
Query: 866 KHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 925
K ++ T+GI V + H+L++N++ GIEAA IIRE+ + +G+
Sbjct: 1286 KDVMNTEGI-VGTKTTTNHVLEVNEIL-----------GIEAARGSIIREIDYTMSNHGM 1333
Query: 926 EVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSL 984
VDPRH+ L+ D MT+ G + + R G+ ++ S +Q +FE + + A+ ++D +
Sbjct: 1334 SVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFFMKKDKI 1393
Query: 985 RAPSARVMLGQECRQGTGLFQL 1006
S ++LG+ GTG F+L
Sbjct: 1394 EGVSECIILGKTMSVGTGAFKL 1415
>gi|350402598|ref|XP_003486538.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like [Bombus
impatiens]
Length = 1385
Score = 263 bits (673), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 218/675 (32%), Positives = 320/675 (47%), Gaps = 100/675 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM S + P++G L QD + G L+ +D FL +A+ L A C+L
Sbjct: 516 RAEALILMGNKSNLVTPRNGELLIAATQDFITGGYLLTQKDMFLNKAQASQL---AGCLL 572
Query: 73 -NTEIR---TLP-PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
+I TLP P I KP LWTGKQ+ S + L P I+ G + +
Sbjct: 573 AGPDIAMSITLPEPAILKPSMLWTGKQIFSLI---LKPNSTCNIKANLKTKG----RAYT 625
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCL 186
S Q ++ D++V IR+ ELL+G +DK GS ++ + + + G + A + L
Sbjct: 626 SNQELCIN---DSYVIIRNSELLAGTMDKSTLGSGSKQNIFYILLRDWGEDIATIAMWRL 682
Query: 187 AKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEII 246
A++ + +L GF++G+ D+ Q + + K++N TE L P
Sbjct: 683 ARMASFFLMNRGFSIGIGDVTPGQGLLKAKEKLLNAGYSKCTEYIRQMEEGRLVCQPGCS 742
Query: 247 SSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAK 306
+ EA I ++ L + ++ + CL E P+N+ M SG+K
Sbjct: 743 EEETLEA---------MILKE----LSVIRDHAGKACLKE----LHPSNSPLIMALSGSK 785
Query: 307 GSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQE 366
GS +N Q+ +GQ + G R R LP F + P A GFV+ F +G+ P E
Sbjct: 786 GSFINISQMIACVGQQAISGHRVPNGFEDRALPHFERHSKIPAAKGFVENSFYSGLTPTE 845
Query: 367 FFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDG 426
FFFH M GREGL+DTAVKT+ +GY+QR LVK LE L +HYDMTVR+S ++Q+LYG DG
Sbjct: 846 FFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCLHYDMTVRNSVGDIVQILYGGDG 905
Query: 427 LDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGK------ 480
LD T Y+ K YK +L+ H +T KSS K
Sbjct: 906 LDPT---YMEGKDCPV---------DYKRVLD----H---------VTAKSSCKNEEPLD 940
Query: 481 -PNFIFSPHRTKFTMD---LLEQWYQ-----LDDKARKKYRKKFKACPQPLISTFQPDAH 531
P+ I + + + D L E++ Q L ARK ++ A P + FQ +
Sbjct: 941 GPDLIKATNELVGSKDCECLSEEFKQELSTFLKGVARKIIHLRYNA-PSNIPVIFQLE-- 997
Query: 532 FGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPST 591
R S + +F K + + PG VG LAAQSIGEP T
Sbjct: 998 ------------------RITVSQLVEFIHTCKEKYMKAKIEPGTAVGALAAQSIGEPGT 1039
Query: 592 QMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAK 651
QMTL TFHFAG MN+T G+PR++EI+ A I TP + D+ + A R+
Sbjct: 1040 QMTLKTFHFAGVASMNITQGVPRIKEII-NANPKISTPIISAALENDVD--PEYARRVKG 1096
Query: 652 SMTRITMADVLEKVK 666
+ + T+ +V E ++
Sbjct: 1097 RIEKTTLGEVTEYIE 1111
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 62/112 (55%), Gaps = 1/112 (0%)
Query: 902 TYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFI 960
T GIEAA I+ E+K V +G+ +D RH LVAD MT G + + R G+ ++ S +
Sbjct: 1249 TLGIEAARATIMTEIKLVMENHGMSIDRRHPMLVADLMTSRGEVLGITRQGLAKMKESVL 1308
Query: 961 QKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNREKK 1012
+FE + + A+ G++D + S +++G GTG+F+L ++ K
Sbjct: 1309 NLASFEKTSDHLFDAAYYGQKDVICGVSESIIMGIPVPVGTGIFKLLHKADK 1360
>gi|395330745|gb|EJF63128.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Dichomitus squalens LYAD-421 SS1]
Length = 1404
Score = 263 bits (672), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 200/635 (31%), Positives = 304/635 (47%), Gaps = 59/635 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+ EA LM+V + P++G P+ IQD + + LS RDTF R ++ +
Sbjct: 509 RTEALELMSVKHNLVTPRNGEPVIAAIQDFITASFLLSRRDTFFDRRQFTQIC-SYFGDA 567
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ-Y 131
+ +I PPTIW+P+ LWTGKQ+ + V++ K +V + + +K++ T+ Y
Sbjct: 568 DLQIDIPPPTIWRPVRLWTGKQIFN-VLMRPNRKSRVFVN----VESKCNKEEKADTKCY 622
Query: 132 GLVH------AVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAV-WDTHGAEHAISLLS 184
+ + D + I + E++ G++DK GS + V V +G A + ++
Sbjct: 623 PWIGKPAPDLSPNDGWLVIVNSEIMCGVMDKATVGSGKKKSVFGVIMRDYGPHEAAAAMN 682
Query: 185 CLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNAL------GLP 238
+AKL YL GF+LG+ D++ K+ ++ A AAC L GL
Sbjct: 683 RVAKLCARYLANFGFSLGINDVIPGPVLSDKKDSMVEAAY-----AACEKLIIRAKKGL- 736
Query: 239 LDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQ 298
L+ P Q EA S +L V N+ ++C+ E P
Sbjct: 737 LENKPGCDQEQTLEAEIS-------------KVLSDVRGNVGEICMKELSRHNAPL---- 779
Query: 299 FMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRF 358
M G+KGS +N Q+ +GQ + G R R+LP F P + GFV F
Sbjct: 780 IMATCGSKGSVINVSQMVACVGQQIIAGHRVPDGFQDRSLPHFPKKSRDPPSKGFVRNSF 839
Query: 359 MTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLI 418
TG+ P EF FH ++GREGL+DTAVKT+ +GY+QR L+K LE L HYD +VR++ ++
Sbjct: 840 YTGLTPTEFLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLVTHYDSSVRNAVGGVV 899
Query: 419 QVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWI--CSY--KVILNLLKKHPLSLALLLLLT 474
Q YG+DGLD + +E WI CS + LL + L T
Sbjct: 900 QFRYGDDGLDPA----CLEGDAQPVEYERAWIHACSVAPRSTRGLLPFEIMDHVDRALAT 955
Query: 475 FKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGS 534
+ + + + KF + + Q +L + +K F+A + + D S
Sbjct: 956 RRFTSECTAAYIATIRKFISENIAQ--KLGEV--RKAHGMFEALERE--EEWDADTDL-S 1008
Query: 535 ISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMT 594
+ + AD + K + + F D+ + K + + PG VG + AQSIGEP TQMT
Sbjct: 1009 MGASYADKIAVDNKVKVTEEQLKLFLDICWTKYVKAKIEPGSTVGAVGAQSIGEPGTQMT 1068
Query: 595 LNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
L TFHFAG MNVTLG+PR++EI+ A KAI TP
Sbjct: 1069 LKTFHFAGVASMNVTLGVPRIKEII-NAAKAISTP 1102
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N + +A GIEAA + II E+ +G+ +DPRH+ L+ D M++ G + + R G+
Sbjct: 1271 NHVIEVAQVLGIEAARKTIINEINYTMKSHGMSIDPRHVMLLGDVMSYKGEVLGITRFGV 1330
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLG 994
++ S + +FE + + AS G+ D++ S +++G
Sbjct: 1331 AKMKDSVLMLASFEKTTDHLFDASAYGKTDAIAGVSESIIMG 1372
>gi|10438121|dbj|BAB15171.1| unnamed protein product [Homo sapiens]
Length = 495
Score = 263 bits (672), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 182/504 (36%), Positives = 261/504 (51%), Gaps = 102/504 (20%)
Query: 593 MTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKS 652
MTLNTFHFAGRG+MNVTLGIPRLREILM+A+ IKTP M +P L + K K+ L K
Sbjct: 1 MTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVL-NTKKALKRVKSLKKQ 59
Query: 653 MTRITMADVLEKVKIKE--WLEISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFER 710
+TR+ + +VL+K+ ++E +E YQ++F F+P Y+ + ++P I+ E
Sbjct: 60 LTRVCLGEVLQKIDVQESFCMEEKQNKFQVYQLRFQFLPHAYYQQEKCLRPEDILRFMET 119
Query: 711 KFLKELEVAIAKR--AAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGR------- 761
+F K L +I K+ A +N+N +R + D+ D+ GE LGR
Sbjct: 120 RFFKLLMESIKKKNNKASAFRNVN---TRRATQRDL-DNAGE--------LGRSRGEQEG 167
Query: 762 --------VDVSSDE-ERDEEDAVQSHKKVN----------------------QEEDNDF 790
VD ++E + D DA + K+ QEE N
Sbjct: 168 DEEEEGHIVDAEAEEGDADASDAKRKEKQEEEVDYESEEEEEREGEENDDEDMQEERNPH 227
Query: 791 EE------PEDEERMSEREEDDNTSNIGERFK-------IEFRDSTNVFVKDVVNQHNIV 837
E +DEE EED + + + + + ++ V+ V H +
Sbjct: 228 REGARKTQEQDEEVGLGTEEDPSLPALLTQPRKPTHSQEPQGPEAMKRRVQAVREIHPFI 287
Query: 838 HKYSYDKKNHMWC---------KLLFLPSNLF-------------------------EEK 863
Y YD + +WC K+ F S+L +
Sbjct: 288 DDYQYDTEESLWCQVTVKLPLMKINFDMSSLVVSLAHGAVIYATKGITRCLLNETTNNKN 347
Query: 864 ESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
E + +L T+GIN+ + +Y +LDL +LY NDIH +A+TYGIEAA RVI +E+K+VFAVY
Sbjct: 348 EKELVLNTEGINLPELFKYAEVLDLRRLYSNDIHAIANTYGIEAALRVIEKEIKDVFAVY 407
Query: 924 GIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDS 983
GI VDPRHLSLVADYM G Y +NR GIR N S +Q+MTFE + ++QA+M G D
Sbjct: 408 GIAVDPRHLSLVADYMCFEGVYKPLNRFGIRSNSSPLQQMTFETSFQFLKQATMLGSHDE 467
Query: 984 LRAPSARVMLGQECRQGTGLFQLR 1007
LR+PSA +++G+ R GTGLF+L+
Sbjct: 468 LRSPSACLVVGKVVRGGTGLFELK 491
>gi|328354455|emb|CCA40852.1| DNA-directed RNA polymerase II subunit A [Komagataella pastoris CBS
7435]
Length = 1460
Score = 263 bits (671), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 208/646 (32%), Positives = 311/646 (48%), Gaps = 69/646 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
++EA LM V + L PK G P+ QD + +S +DTF RA + Q L +
Sbjct: 529 RSEAMNLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDTFFDRASLV----QILASM 584
Query: 73 NTEIRTL---PPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKK--QFG 127
+ I PP+I+KP LWTGKQV S ++I K V I LD K F
Sbjct: 585 SDGIEHFDLPPPSIFKPAYLWTGKQVFS-LLIKPNAKSNVNIN--------LDAKCKTFI 635
Query: 128 STQYGLVHAVW--DTHVTIRHGELLSGILDKKQFG-STQYGLVHAVWDTHGAEHAISLLS 184
G + D V +R ++LSG++DK G ++ + + + +G A + ++
Sbjct: 636 PPPAGQPSEMSPNDGFVIVRGSKILSGVMDKSLLGDGKKHSVFYTILRDYGPHEAANAMN 695
Query: 185 CLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPE 244
+AKL YL GF++G+ D+ E R++ ++ +A + E L+T P
Sbjct: 696 RMAKLCARYLGNRGFSIGINDVTPGDELSREKECMVEEAYKKCDELIKLFNHGKLETQPG 755
Query: 245 IISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQF-MVES 303
Q EA + LL KV + +VC+ E P++N M
Sbjct: 756 CNEEQTLEA-------------KIGGLLSKVREEVGEVCIKE-----LPSSNAPLIMATC 797
Query: 304 GAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQ 363
G+KGST+N Q+ ++GQ + G R R+LP FL +P++ GFV F +G+
Sbjct: 798 GSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFLKNSKTPQSKGFVRNSFYSGLN 857
Query: 364 PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYG 423
P EF FH ++GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR+S ++Q YG
Sbjct: 858 PPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSAQYDHTVRNSSSGVVQFTYG 917
Query: 424 EDGLDVT-----------KRQYLTDKQFSFLEDNIKWICSYKVI------LNLLKKHPLS 466
DGLD KR + +F ++ K + Y+++ L+ LK +
Sbjct: 918 GDGLDPLDMEGDAKPVNFKRTWDHAYNITFNNED-KPLLPYEIMKIADSFLDPLKDRLVR 976
Query: 467 L-ALLLLLTFKSSGKPNFI--FSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLI 523
L L ++ + + +I F RT + D L+ + K R+ K P
Sbjct: 977 LDNLGNIVNPEDADNIEYIDQFDAERTFY--DTLKDFLFQKTKQLAALRES-KGFP---- 1029
Query: 524 STFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAA 583
Q F S + + S++ R + V KF ++ K + PG VG + A
Sbjct: 1030 GLLQEPESFVDESPDHSVSILINQLYRITEAAVTKFLELSATKYNRAKVEPGTAVGAIGA 1089
Query: 584 QSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
QSIGEP TQMTL TFHFAG MNVTLG+PR++EI+ A+K I TP
Sbjct: 1090 QSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII-NASKTISTP 1134
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 84/156 (53%), Gaps = 14/156 (8%)
Query: 866 KHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 925
K ++ TDG+ V ++ H+L++ + T GIEAA II E+ + +G+
Sbjct: 1301 KEVIATDGV-VGCKTKTNHVLEVYE-----------TLGIEAARSCIINEIDYTMSKHGM 1348
Query: 926 EVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSL 984
VDPRH+ L+ D M++ G + + R G+ ++ S +Q +FE + + A+ ++D +
Sbjct: 1349 SVDPRHIQLLGDVMSYKGEVLGITRFGLAKMRDSVLQLASFEKTTDHLFDAAFYMKKDLV 1408
Query: 985 RAPSARVMLGQECRQGTGLFQL-RNREKKKKKVEAK 1019
S V+LGQ GTG FQL + E ++ ++ AK
Sbjct: 1409 EGVSECVILGQTMTIGTGAFQLVKKTETQRGQLVAK 1444
>gi|444314063|ref|XP_004177689.1| hypothetical protein TBLA_0A03720 [Tetrapisispora blattae CBS 6284]
gi|387510728|emb|CCH58170.1| hypothetical protein TBLA_0A03720 [Tetrapisispora blattae CBS 6284]
Length = 1458
Score = 262 bits (669), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 204/653 (31%), Positives = 309/653 (47%), Gaps = 77/653 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + L PK G P+ QD + +S +D+F RA + L+ +C
Sbjct: 527 RAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRATFTQLL-SMMCDG 585
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLS---------TVIINLTPKDKVIIRHGELLSGILDK 123
N + PP I KP LWTGKQ+ S V+IN+ K+KV +
Sbjct: 586 NLQFDIPPPAIMKPCYLWTGKQLFSLLIKPNSNSPVVINVDAKNKVFKPPKD-------- 637
Query: 124 KQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFG-STQYGLVHAVWDTHGAEHAISL 182
K S + D V IR ++LSG++DK G ++ + + + +G + A +
Sbjct: 638 KSLPSEM-----SPNDGFVVIRGSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAATA 692
Query: 183 LSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNAL-GL---- 237
++ +AKL +L GF++G+ D+ + + ++ A A C+ L GL
Sbjct: 693 MNRMAKLCARFLGNRGFSIGINDVTPDDKLKNLKENLVEIAY-----AKCDELIGLYNQG 747
Query: 238 PLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNL 297
L+T P Q EA S +L KV + +C+ E ++ + N
Sbjct: 748 KLETQPGCNEEQTLEAKIS-------------GILSKVREEVGDICINE--LDNW--NAP 790
Query: 298 QFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGR 357
M G+KGS +N Q+ ++GQ + G R R+LP F +P++ GFV
Sbjct: 791 LIMATCGSKGSNLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFQKNSKTPQSKGFVRNS 850
Query: 358 FMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSL 417
F +G+ P EF FH ++GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR S +
Sbjct: 851 FYSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTSSNGI 910
Query: 418 IQVLYGEDGLDV-----------TKRQYLTDKQFSFLEDNIKWICSYKVILNLLKK--HP 464
+Q YG DGLD R + F ++N K I Y+ IL + HP
Sbjct: 911 VQFTYGGDGLDPFDMEGNAQPVNFNRSWDHAYNIKF-DNNDKTIYPYQ-ILEITNDILHP 968
Query: 465 LSLALLL------LLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKAC 518
L L+ ++T ++SGK F+ + + L + + KA + +
Sbjct: 969 LEEKLIRYDNIGKVVTPENSGKDEFVDQLDAERNFYNSLRDY--MTKKANELADVRKSRG 1026
Query: 519 PQPLISTFQPDAHFGSISENLADSVVKYTK--GRTDASHVDKFYDMIFYKNLLSLANPGE 576
+ L+S + + E DS+ + R + V +F + K + PG
Sbjct: 1027 MKELLSAPGDEFKLMDLDEQTPDSIRHSVEQICRITENTVREFLKIAITKYRRARVEPGT 1086
Query: 577 NVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
VG + AQSIGEP TQMTL TFHFAG MNVTLG+PR++EI+ A+K I TP
Sbjct: 1087 AVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII-NASKVISTP 1138
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 76/142 (53%), Gaps = 13/142 (9%)
Query: 866 KHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 925
+ ++ TDG+ + + H+L++N S GIEAA II E+ + +G+
Sbjct: 1299 RDVMCTDGV-IGSKTTTNHVLEVN-----------SVLGIEAARASIIGEIDYTMSNHGM 1346
Query: 926 EVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSL 984
VDPRH+ L+ D MT+ G + + R G+ ++ S +Q +FE + + A+ ++D++
Sbjct: 1347 SVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAV 1406
Query: 985 RAPSARVMLGQECRQGTGLFQL 1006
S ++LGQ GTG F++
Sbjct: 1407 EGVSECIILGQTMSIGTGSFKV 1428
>gi|321475339|gb|EFX86302.1| hypothetical protein DAPPUDRAFT_45101 [Daphnia pulex]
Length = 1389
Score = 261 bits (668), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 203/672 (30%), Positives = 317/672 (47%), Gaps = 96/672 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCI- 71
+AEA LM S + P++G L IQD + L+L+D F RA+ +V L
Sbjct: 519 RAEALILMGNKSNLVTPRNGELLIAAIQDFITGAYLLTLKDAFFDRAKTCQMVASMLAGD 578
Query: 72 -LNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+N I+ PP I KP +W+GKQ+ S +I+ P + + + L K ++
Sbjct: 579 EVNMVIKLPPPCIQKPAAMWSGKQIFS-LILRPNPGNPIKVN--------LRTKGKEYSK 629
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
V D + +R+ E+L+G +DK GS ++ + + + +G + AI + L ++
Sbjct: 630 KNEEFCVNDGFLLVRNSEVLAGCVDKSTIGSGSKINIFYVLLRDYGEDFAIQAMWKLCRV 689
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALG--LPLDTDPEIIS 247
+ Y+ GF++G+ D+ + +++ K+++ + C+ L + P +
Sbjct: 690 ASYYMMNRGFSIGIGDVTPGKTLLKEKQKLLDSGY-----SKCDEYIRLLTIGQLPCLPG 744
Query: 248 SQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKG 307
++E+ S +I ++ + D+ +VC E P+N+ M +SG+KG
Sbjct: 745 CNVEESLES------KILKELSGIRDQA----GEVCKK----ELHPSNSPLVMSKSGSKG 790
Query: 308 STVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEF 367
S +N Q+ +GQ L GKR R+LP F + P A GFV F +G+ P EF
Sbjct: 791 SYINISQMIACVGQQALNGKRVPNGFEDRSLPHFKRHSKIPAAKGFVSNSFYSGLTPTEF 850
Query: 368 FFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL 427
FFH M GREGL+DTAVKT+ +GY+QR L+K LE L YD TVR+S +IQ +YG DGL
Sbjct: 851 FFHTMGGREGLVDTAVKTADTGYMQRRLIKSLEDLCCQYDSTVRNSAGEIIQFVYGGDGL 910
Query: 428 DVTKRQYLTDK----QFSFLEDNIKWICSYKVILNLLKKHPL-------SLALLLLLTFK 476
D T Y+ K F D+IK Y + PL + ++ FK
Sbjct: 911 DPT---YMEAKDRPVDFQRTLDHIKAASPYP------DEEPLDDNELEHAFNTIMETDFK 961
Query: 477 SSGKPNF-----IFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAH 531
+ G +F +F + K + + + YQ+D +A K +
Sbjct: 962 TLGI-DFKHELRVFVESQVK-RIKSVREIYQMDSRALHPVEKHLE--------------- 1004
Query: 532 FGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPST 591
R + +F D K + PG VG L AQSIGEP T
Sbjct: 1005 ------------------RITVGQLVEFCDFAKEKYERAKIEPGTAVGALCAQSIGEPGT 1046
Query: 592 QMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAK 651
QMTL TFHFAG MN+T G+PR++EI+ A+KAI TP + L D + A R+
Sbjct: 1047 QMTLKTFHFAGVASMNITQGVPRIKEII-NASKAISTPVISTQLLKD--DDPEYARRVKG 1103
Query: 652 SMTRITMADVLE 663
+ + T+ +V E
Sbjct: 1104 RIEKTTLGEVTE 1115
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 66/114 (57%), Gaps = 1/114 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N+I ++ST GIEAA I +E+K +G+ VD RH++L++D M+ G + + RNG+
Sbjct: 1249 NNILEVSSTLGIEAAKATIAKEIKFTMESHGMSVDRRHVALLSDLMSCRGEILGITRNGL 1308
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
++ S + +FE + + A+ G+ED + S +++G GTG F+L
Sbjct: 1309 NKMKESVLMLASFESTSDHLFDAAYYGQEDEVTGVSECIIMGIPMSIGTGAFKL 1362
>gi|254573222|ref|XP_002493720.1| RNA polymerase III subunit C160, part of core enzyme [Komagataella
pastoris GS115]
gi|238033519|emb|CAY71541.1| RNA polymerase III subunit C160, part of core enzyme [Komagataella
pastoris GS115]
Length = 1460
Score = 261 bits (668), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 208/646 (32%), Positives = 310/646 (47%), Gaps = 69/646 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
++EA LM V + L PK G P+ QD + +S +DTF RA + Q L +
Sbjct: 529 RSEAMNLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDTFFDRASLV----QILASM 584
Query: 73 NTEIRTL---PPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKK--QFG 127
+ I PP+I+KP LWTGKQV S ++I K V I LD K F
Sbjct: 585 SDGIEHFDLPPPSIFKPAYLWTGKQVFS-LLIKPNAKSNVNIN--------LDAKCKTFI 635
Query: 128 STQYGLVHAVW--DTHVTIRHGELLSGILDKKQFG-STQYGLVHAVWDTHGAEHAISLLS 184
G + D V +R ++LSG++DK G ++ + + + +G A + ++
Sbjct: 636 PPPAGQPSEMSPNDGFVIVRGSKILSGVMDKSLLGDGKKHSVFYTILRDYGPHEAANAMN 695
Query: 185 CLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPE 244
+AKL YL GF++G+ D+ E R++ ++ +A + E L+T P
Sbjct: 696 RMAKLCARYLGNRGFSIGINDVTPGDELSREKECMVEEAYKKCDELIKLFNHGKLETQPG 755
Query: 245 IISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQF-MVES 303
Q EA + LL KV + VC+ E P++N M
Sbjct: 756 CNEEQTLEA-------------KIGGLLSKVREEVGGVCIKE-----LPSSNAPLIMATC 797
Query: 304 GAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQ 363
G+KGST+N Q+ ++GQ + G R R+LP FL +P++ GFV F +G+
Sbjct: 798 GSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFLKNSKTPQSKGFVRNSFYSGLN 857
Query: 364 PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYG 423
P EF FH ++GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR+S ++Q YG
Sbjct: 858 PPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSAQYDHTVRNSSSGVVQFTYG 917
Query: 424 EDGLDVT-----------KRQYLTDKQFSFLEDNIKWICSYKVI------LNLLKKHPLS 466
DGLD KR + +F ++ K + Y+++ L+ LK +
Sbjct: 918 GDGLDPLDMEGDAKPVNFKRTWDHAYNITFNNED-KPLLPYEIMKIADSFLDPLKDRLVR 976
Query: 467 L-ALLLLLTFKSSGKPNFI--FSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLI 523
L L ++ + + +I F RT + D L+ + K R+ K P
Sbjct: 977 LDNLGNIVNPEDADNIEYIDQFDAERTFY--DTLKDFLFQKTKQLAALRES-KGFP---- 1029
Query: 524 STFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAA 583
Q F S + + S++ R + V KF ++ K + PG VG + A
Sbjct: 1030 GLLQEPESFVDESPDHSVSILINQLYRITEAAVTKFLELSATKYNRAKVEPGTAVGAIGA 1089
Query: 584 QSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
QSIGEP TQMTL TFHFAG MNVTLG+PR++EI+ A+K I TP
Sbjct: 1090 QSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII-NASKTISTP 1134
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 84/156 (53%), Gaps = 14/156 (8%)
Query: 866 KHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 925
K ++ TDG+ V ++ H+L++ + T GIEAA II E+ + +G+
Sbjct: 1301 KEVIATDGV-VGCKTKTNHVLEVYE-----------TLGIEAARSCIINEIDYTMSKHGM 1348
Query: 926 EVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSL 984
VDPRH+ L+ D M++ G + + R G+ ++ S +Q +FE + + A+ ++D +
Sbjct: 1349 SVDPRHIQLLGDVMSYKGEVLGITRFGLAKMRDSVLQLASFEKTTDHLFDAAFYMKKDLV 1408
Query: 985 RAPSARVMLGQECRQGTGLFQL-RNREKKKKKVEAK 1019
S V+LGQ GTG FQL + E ++ ++ AK
Sbjct: 1409 EGVSECVILGQTMTIGTGAFQLVKKTETQRGQLVAK 1444
>gi|134113452|ref|XP_774751.1| hypothetical protein CNBF4300 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257395|gb|EAL20104.1| hypothetical protein CNBF4300 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 1466
Score = 261 bits (666), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 197/679 (29%), Positives = 321/679 (47%), Gaps = 58/679 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+ EA LM+V + P++G P+ IQD + + LS RD F R ++ +V L
Sbjct: 527 RTEALELMSVKKNLVTPRNGEPIIAAIQDFITAAYLLSRRDRFYDRQQFTQIV-SYLDDA 585
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N +I PPTIWKP+ LWTGKQ+ + +++ + KV++ ++D + ++
Sbjct: 586 NLKIEMPPPTIWKPVRLWTGKQIFN-LLMRPNKESKVLVNLEAKCRTLVDPAK--EDRFP 642
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAV-WDTHGAEHAISLLSCLAKLFT 191
+ D ++ I++ E++ G+ DK G + V V +G E A ++ LAK+
Sbjct: 643 PDMSPNDGYLVIQNSEIMCGVFDKNTVGDGKKNSVFGVILRDYGPEEAAQAMNRLAKIAA 702
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQ 251
+L +GF+LG+ D++ I++ ++ E A + + +D + +L+
Sbjct: 703 RWLANIGFSLGINDVIP--------GPILHASKDARVEKAYDECDVFIDLAKK---GKLE 751
Query: 252 EAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVN 311
A + A ++ + L V + ++C+ E P M G+KGS +N
Sbjct: 752 NAPGCDQE--ATLESKISKTLSDVREAVGKICMQELSRHNAPL----IMATCGSKGSVIN 805
Query: 312 TMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHC 371
Q+ +GQ + G R R+LP F +P + GFV F +G+ P EF FH
Sbjct: 806 VAQMVACVGQQIIGGSRVRNGFQDRSLPHFRKKSKNPPSKGFVRNSFFSGLTPPEFLFHA 865
Query: 372 MAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTK 431
M+GREGL+DTAVKT+ +GY+ R L+K LE L HYD++VR+S ++Q YG+D LD
Sbjct: 866 MSGREGLVDTAVKTAETGYMARRLMKALEDLCTHYDLSVRNSVGGIVQFQYGDDMLDPA- 924
Query: 432 RQYLTDKQFSFLEDNIKWICSYKVILNLLKK-HPLSLALLLLLTFKSS-GKPNFIFSPHR 489
+ + +E W + + N + +P + + + S PNF SP +
Sbjct: 925 ---CLEGDATPVEYVRSWTHACRTAGNQGRALYPYEVRRIAARIYPESFVPPNFSLSPPK 981
Query: 490 TK-------------FTMDLLEQWYQLDDKARKK-YR----KKFKACPQPLISTFQPDAH 531
TK L ++W K R+ Y+ K K ++ PDA
Sbjct: 982 TKSRRRKEPTPPPPVVAPTLPKEWEGCHHKFRENTYKFVVDKIVKQMVDQRLARGLPDAD 1041
Query: 532 FGSISE------NLADSVVKYT---KGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLA 582
++E N D V+ + + + F + + L + PG VG +
Sbjct: 1042 DEEMAEEYEALLNSDDPAVQRVLENANKVTEAQLSSFLENCRIRYLRAKIEPGSTVGAVG 1101
Query: 583 AQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKL 642
AQSIGEP TQMTL TFHFAG MNVTLG+PR++EI+ A K I TP + +P+
Sbjct: 1102 AQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII-NAAKVISTPIIAAELA--IPES 1158
Query: 643 EKKANRLAKSMTRITMADV 661
E A + + + + D+
Sbjct: 1159 ETAARIVKGRIEKTVLGDI 1177
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 89/196 (45%), Gaps = 25/196 (12%)
Query: 803 EEDDNTSNIG--ERFKIEFRDSTNVFVKDV-VNQHNIVHKYSYDKKNHMWCKLLFLPSNL 859
+E D +G ER K R +V VK + + +V K D+KN +LL L
Sbjct: 1244 DESDKDKGVGIYERLKFLKRAIPSVQVKGLPAIERGVVTK---DEKNEKIHRLLVTGYGL 1300
Query: 860 FEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNV 919
E ++ T+G+ D K N + GIEAA I E++
Sbjct: 1301 SE------VMGTEGV------------DGLKTKTNHVMETQQVLGIEAARSTIYNEIQTT 1342
Query: 920 FAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQ 978
+G+ +DPRH+ L+ D MT+ G + + R G+ ++ S + +FE + + AS+
Sbjct: 1343 MKSHGMSIDPRHVMLLGDVMTYKGEVLGITRFGVQKMKDSVLMLASFEKTTDHLFDASLY 1402
Query: 979 GREDSLRAPSARVMLG 994
++D ++ S +++G
Sbjct: 1403 SKKDEIQGVSECIIMG 1418
>gi|403159566|ref|XP_003320172.2| DNA-directed RNA polymerase III subunit C1 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|375168152|gb|EFP75753.2| DNA-directed RNA polymerase III subunit C1 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 1419
Score = 261 bits (666), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 195/658 (29%), Positives = 320/658 (48%), Gaps = 49/658 (7%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+ EA+ LMN+ + P++G P+ QD + + LS +D F R ++ ++ Q L
Sbjct: 532 RTEATELMNIKYNLVTPRNGEPIIAATQDFITASFLLSRKDNFYDRQQFSQIL-QYLSDA 590
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTP-KDKVIIRHGELLSGILDKKQFGSTQY 131
I PP IWKP+ LWTGKQV + + + P KD + + E Q + +Y
Sbjct: 591 TLHIDLPPPVIWKPVRLWTGKQVFNVL---MRPNKDSPVKVNVEAKCAT---HQKAAPEY 644
Query: 132 GLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDT-HGAEHAISLLSCLAKLF 190
+ D + I++ E++ G++DK G + + AV + G + A+ ++ LAK+
Sbjct: 645 LPDMSPNDGWLVIQNSEIMCGVVDKAIVGGGKKDSIFAVINCDFGPDEAVKAMNRLAKVS 704
Query: 191 TVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQL 250
+L +GF++GV D+ + ++ ++ KA + E + L+T P Q
Sbjct: 705 ARWLANMGFSIGVGDVTPGERLSTQKNALVAKAYKETDELIQQSKAGKLETLPGRDLDQT 764
Query: 251 QEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTV 310
EA S +L KV +++ ++C+ E P M G+KGS +
Sbjct: 765 LEAMIS-------------GVLSKVRDSLGEICMAELTRHNAPL----IMATCGSKGSKI 807
Query: 311 NTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFH 370
N Q+ +GQ + G R R+LP F P A GFV F +G++ EF FH
Sbjct: 808 NVAQMVACVGQQIISGNRIPDGFQDRSLPHFHKKAKEPPAKGFVRNSFHSGLRATEFLFH 867
Query: 371 CMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVT 430
++GREGL+DTAVKT+ +GY+QR L+K LE L YD +VR+S ++Q YG+DGLD T
Sbjct: 868 AISGREGLVDTAVKTAETGYMQRRLMKALEDLATRYDDSVRNSVGGVVQFTYGDDGLDPT 927
Query: 431 KRQYLTDK----QFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFS 486
YL +F+ + K S+ L+ HP + L+ +P F +
Sbjct: 928 ---YLEGDGEPVEFARTWRHTKATVSH---LDGRGLHPYEITQLVT---DGLAQPRFTTA 978
Query: 487 PHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPD-AHFGSISENLADSVVK 545
+ +F +L+ + K +R+ + P + D + +S ++++ K
Sbjct: 979 CTQ-RFRDSVLDFMVERVVKPAANFRQSYGMYPA---LELEGDWDEYTDLSAGVSEASKK 1034
Query: 546 YTKGRTDAS--HVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGR 603
+T + ++ F D + K + + PG VG + AQSIGEP TQMTL TFHFAG
Sbjct: 1035 IVINKTQVTLKQIETFLDHCWKKYVKAKVEPGTAVGAVGAQSIGEPGTQMTLKTFHFAGV 1094
Query: 604 GDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADV 661
MN+TLG+PR++EI+ A+K I P + P + + E+ A + + + + DV
Sbjct: 1095 ASMNITLGVPRIKEII-NASKLINGPIINAPLVANHN--ERSARIVKARLEKTYLGDV 1149
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N I S GIEAA II+E+ +G++VDPRH+ L+ D M + G + + R GI
Sbjct: 1289 NHIMEAQSVLGIEAARNCIIKEISYTMDSHGLKVDPRHMMLLGDIMCYKGEVLGITRFGI 1348
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLG 994
++ S + +FE + + A++ + D++ S +++G
Sbjct: 1349 AKMKDSVLMLASFEKTTDHLFDAALYSKRDAIEGVSECIIMG 1390
>gi|195432649|ref|XP_002064329.1| GK20105 [Drosophila willistoni]
gi|194160414|gb|EDW75315.1| GK20105 [Drosophila willistoni]
Length = 1381
Score = 261 bits (666), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 199/629 (31%), Positives = 301/629 (47%), Gaps = 80/629 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM S + PK+G L QD + G L+ ++ FLT+ E M L A C L
Sbjct: 515 RAEAIILMGNQSNLVTPKNGEILIAATQDFITGGYLLTQKEVFLTKEEAMQL---AACFL 571
Query: 73 NTEIRTL-----PPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
+ + T+ PP I KP LWTGKQ+ S + + P I LL+ + + +
Sbjct: 572 SNDDSTMRIQMPPPAILKPRRLWTGKQIFSLL---MRPNSDSPI----LLNMVCKGRNYA 624
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCL 186
L D+ V IR+ EL+ G++DK GS T+ + + + G A + L
Sbjct: 625 GN---LDLCNNDSWVHIRNSELMCGVMDKATLGSGTKQCIFYLLLRDFGEAFATKAMWRL 681
Query: 187 AKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEII 246
A++ + ++Q GF+ G+ D+ ++ + + ++++ A CN + ++
Sbjct: 682 ARIASFFIQNRGFSFGISDVTPSKKLLQHKQVLLDRGY-----AKCN------EYIDKLK 730
Query: 247 SSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAK 306
+ LQ P D ++++ + + I + E P N+ M SG+K
Sbjct: 731 AGTLQCQPGCSP------DETLEAVMLRELSGIREQAAKTCFAELHPTNSALIMALSGSK 784
Query: 307 GSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQE 366
GS +N Q+ +GQ + GKR R LP F + P A GFV F +G+ P E
Sbjct: 785 GSNINISQMIACVGQQAISGKRVPNGFEDRALPHFDKHSAIPAARGFVQNSFYSGLTPTE 844
Query: 367 FFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDG 426
FFFH MAGREGL+DTAVKT+ +GYLQR LVK LE L VHYD TVR++ ++ +YG DG
Sbjct: 845 FFFHTMAGREGLVDTAVKTAETGYLQRRLVKCLEDLVVHYDGTVRNAINEMVDTIYGGDG 904
Query: 427 LD---VTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNF 483
LD + R D + DN++ ++ PLS +L +P
Sbjct: 905 LDPVSMETRNKPVDLVHQY--DNLRAQKPRG------EQKPLSSTEILSEVETILKQPE- 955
Query: 484 IFSPHRTKFTMDL---LEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLA 540
F+ R+ F D+ L + + KKY C Q I
Sbjct: 956 -FAEARSDFKADVNKHLNSVAKRIEGIHKKYLAHGDLCHQ--------------IEAVSG 1000
Query: 541 DSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHF 600
+ +++Y + +++ Y+ +++ PG VG +AAQSIGEP TQMTL TFHF
Sbjct: 1001 EQLLEYLR------RINERYNR-------AVSEPGTAVGAIAAQSIGEPGTQMTLKTFHF 1047
Query: 601 AGRGDMNVTLGIPRLREILMMATKAIKTP 629
AG MN+T G+PR+ EI+ ATK I TP
Sbjct: 1048 AGVASMNITQGVPRIVEII-NATKTISTP 1075
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 68/122 (55%), Gaps = 1/122 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N+I + T GIEAA +I+ E+ +V +G+ VD RH+ L+A MT G + + R+G+
Sbjct: 1242 NNICEVFQTLGIEAARTIIMSEITDVMEGHGMSVDSRHIMLLASQMTARGEVLGITRHGL 1301
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNREKK 1012
++ S +FE + + A+ G+ D++ S R++LG GTG+F+L +
Sbjct: 1302 AKMRESVFNLASFEKTADHLFDAAYYGQTDAVNGVSERIILGMPAGIGTGIFKLLQHHED 1361
Query: 1013 KK 1014
K+
Sbjct: 1362 KE 1363
>gi|156370189|ref|XP_001628354.1| predicted protein [Nematostella vectensis]
gi|156215328|gb|EDO36291.1| predicted protein [Nematostella vectensis]
Length = 1398
Score = 261 bits (666), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 209/635 (32%), Positives = 300/635 (47%), Gaps = 86/635 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM V + + P++G PL IQD + L+ +D FL R+ L L
Sbjct: 516 KAEALTLMGVKNNLVTPRNGEPLIAAIQDFITGAYLLTYKDVFLDRSHIAQLCASILAGK 575
Query: 73 NT--EIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+T +I PP I KP LWTGKQV S + L P KV +R G KQ+ S
Sbjct: 576 DTGVDIELPPPAIHKPCRLWTGKQVFSVL---LRPNPKVKVRMNLRARG----KQYTS-- 626
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
G V D+ V I + +L+ G LDK GS ++ + + + G + A + +A++
Sbjct: 627 -GEDLCVNDSFVVIHNSDLMCGALDKAVLGSGSKNSVFYVLLRDFGQQVAADAMWRVARI 685
Query: 190 FTVYLQRVGFTLGVRDI-----LVRQERD------RKRTKIINKAR--RLGTEAACNALG 236
+L GF++G+ D+ L++ + D K IN+ R +L T+ C+A
Sbjct: 686 CPFFLSNRGFSIGIGDVTPGHGLLQAKEDLLSTGYSKCEDYINEFREGKLQTQPGCSA-- 743
Query: 237 LPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANN 296
DT +I L+E L + ++ + CL E +N
Sbjct: 744 --EDTLEAVI---LKE-------------------LSVIRDHAGKACLR----ELHKSNT 775
Query: 297 LQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDG 356
M G+KGS +N Q+ +GQ + GKR R+LP F + P A GFV
Sbjct: 776 PLTMAVCGSKGSFINISQMIACVGQQAISGKRIPDGFEDRSLPHFKRHSKLPAAKGFVKN 835
Query: 357 RFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLS 416
F +G+ P EFFFH M GREGL+DTAVKT+ +GY+QR LVK LE L+ YD+TVR S
Sbjct: 836 SFFSGLTPTEFFFHAMGGREGLVDTAVKTAETGYMQRRLVKSLEDLSTQYDITVRTSTGD 895
Query: 417 LIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPL--SLALLLLLT 474
++Q YG DGLD T + DK F C++ + ++ PL S A +
Sbjct: 896 IVQFRYGGDGLDPTDMEG-KDKPLDFSRVFSHIQCNHV----MREERPLTSSRAREIAKG 950
Query: 475 FKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGS 534
S + +T+ T D +E K +K ++ P + S
Sbjct: 951 IIESSEFEMCSKDFKTE-TSDFVENLA----KKIEKIHAQYGVVPHSITS---------- 995
Query: 535 ISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMT 594
+ +V Y R + + F M K L + PG VG + AQSIGEP TQMT
Sbjct: 996 ------NKIVDYVN-RCTETQLKLFLSMCREKYLRARMEPGSAVGAICAQSIGEPGTQMT 1048
Query: 595 LNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
L TFHFAG MN+TLG+PR++EI+ A++ I TP
Sbjct: 1049 LKTFHFAGVASMNITLGVPRIKEII-NASRKISTP 1082
Score = 63.2 bits (152), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 63/110 (57%), Gaps = 1/110 (0%)
Query: 904 GIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQK 962
GIEAA + I+ E+ +G+ +D RH+ L+A+ M G + + R+G+ ++ S +
Sbjct: 1262 GIEAARQTIMNEIIYTMKNHGMSIDVRHVMLLAELMAFKGEILGITRHGLAKMKESVLML 1321
Query: 963 MTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNREKK 1012
+FE + + +A++ GR+D + S +++G GTG+F+L ++ +
Sbjct: 1322 ASFERTADHLFEAALHGRKDPIDGVSECIIMGMPMNIGTGMFKLLHKPTR 1371
>gi|328790760|ref|XP_003251457.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like, partial
[Apis mellifera]
Length = 1374
Score = 260 bits (665), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 208/664 (31%), Positives = 317/664 (47%), Gaps = 78/664 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM S + P++G L QD + G L+ +D FL + + L A C+L
Sbjct: 516 RAEALVLMGNKSNLVTPRNGELLIAATQDFITGGYLLTQKDMFLNKTQASQL---AGCLL 572
Query: 73 N-----TEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
I P I KP LWTGKQ+ S + L P + I+ + + K +
Sbjct: 573 AGPDIAMSINLPEPAILKPTTLWTGKQIFSLI---LKPNNTCNIK-----ANLKTKGRAY 624
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCL 186
+T L + D++V IR+ ELL+G +DK GS ++ + + + G + A + L
Sbjct: 625 TTNEEL--CINDSYVIIRNSELLAGSMDKSTLGSGSKQNIFYILLRDWGEDIATIAMWRL 682
Query: 187 AKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEII 246
A++ + +L GF++G+ D+ Q + + +++N TE + L P
Sbjct: 683 ARMASFFLMNRGFSIGIGDVTPGQGLLKAKQELLNAGYSKCTEYIQDMEEGRLICQPGCT 742
Query: 247 SSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAK 306
+ EA I ++ L + ++ + CL E P+N+ M SG+K
Sbjct: 743 EEETLEA---------MILKE----LSVIRDHAGKACLKE----LHPSNSPLIMALSGSK 785
Query: 307 GSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQE 366
GS +N Q+ +GQ + G R R LP F + P A GFV+ F +G+ P E
Sbjct: 786 GSFINISQMIACVGQQAISGHRVPNGFEDRALPHFERHSKIPAAKGFVENSFYSGLTPTE 845
Query: 367 FFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDG 426
FFFH M GREGL+DTAVKT+ +GY+QR LVK LE L +HYDMTVR+S ++Q+LYG D
Sbjct: 846 FFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCLHYDMTVRNSVGDIVQILYGGDA 905
Query: 427 LDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFS 486
LD T Y+ K YK IL+ ++ KS K
Sbjct: 906 LDPT---YMEGKDCPV---------DYKRILDHVRA-------------KSPCKNEESLD 940
Query: 487 PHRT-KFTMDLL--EQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSV 543
H K T +LL E++ L ++ +++ K+ + + + N A +V
Sbjct: 941 GHSVIKATNELLNSEEYECLSEEFKQELSTFLKSVARKI----------ARLRHNAALNV 990
Query: 544 -VKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAG 602
V R S + +F K + + PG VG LAAQSIGEP TQMTL TFHFAG
Sbjct: 991 PVILQLERLTVSQLVEFIHTCKEKYMRAKIEPGTAVGALAAQSIGEPGTQMTLKTFHFAG 1050
Query: 603 RGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVL 662
MN+T G+PR++EI+ A+ I TP + + D + A R+ + + T+ +V
Sbjct: 1051 VASMNITQGVPRIKEII-NASPKISTPIITAALINDAD--PEYARRVKGRIEKTTLGEVT 1107
Query: 663 EKVK 666
E ++
Sbjct: 1108 EYIE 1111
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 62/112 (55%), Gaps = 1/112 (0%)
Query: 902 TYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFI 960
T GIEAA I+ E+K V +G+ +D RH LVAD MT G + + R G+ ++ S +
Sbjct: 1249 TLGIEAARATIMTEIKLVMENHGMSIDRRHPMLVADLMTSRGEVLGITRQGLAKMKESVL 1308
Query: 961 QKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNREKK 1012
+FE + + A+ G++D + S +++G GTG+F+L ++ K
Sbjct: 1309 NLASFEKTSDHLFDAAYYGQKDVICGVSESIIMGIPVPVGTGIFKLLHKADK 1360
>gi|190347890|gb|EDK40245.2| DNA-directed RNA polymerase III largest subunit [Meyerozyma
guilliermondii ATCC 6260]
Length = 1379
Score = 260 bits (665), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 200/650 (30%), Positives = 303/650 (46%), Gaps = 81/650 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + L PK G P+ QD + +S +D+F RA ++ L+ +
Sbjct: 455 RAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFYDRATFIQLL-SMMSDA 513
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLS---------TVIINLTPKDKVIIRHGELLSGILDK 123
+ + PPTI+KP+ LWTGKQV S VI+NL K+K
Sbjct: 514 DLQFDLPPPTIFKPVMLWTGKQVFSLLMKPNKNSNVIVNLDAKNKAFTPP---------- 563
Query: 124 KQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFG-STQYGLVHAVWDTHGAEHAISL 182
+ Y + D +V IR ++LSG++DK G ++ + + + G + A
Sbjct: 564 ----APGYPNEMSPNDGYVIIRGSQVLSGVMDKSTLGDGKKHSVFYTILRDFGPDAAAEA 619
Query: 183 LSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTD 242
++ +AKL YL GF++G+ D+ + RK+ ++ +A E L+T
Sbjct: 620 MNRMAKLCARYLGNRGFSIGINDVTPGTDLKRKKELMVEQAYLKCDELIDLYNRGKLETQ 679
Query: 243 PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
P Q EA + LL KV + +VC+ E AN M
Sbjct: 680 PGCNEEQTLEA-------------KIGGLLSKVREQVGEVCINE----LDSANAPLIMAT 722
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
G+KGST+N Q+ ++GQ + G R R+LP F +P++ GFV F +G+
Sbjct: 723 CGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFTKNSKTPQSKGFVRNSFFSGL 782
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
P EF FH ++GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR+S ++Q Y
Sbjct: 783 SPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSAQYDNTVRNSSNGIVQFTY 842
Query: 423 ---GEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSG 479
G D D+ + +F +W +Y V ++ L LL +K
Sbjct: 843 GGDGLDPFDMEGDA----RPVNFAR---QWSHAYNVTYDVND--------LGLLPYKILQ 887
Query: 480 KPNFIFSPHRTKFT-MDLL-----------EQWYQLDDKARKKYR--KKFKACPQPLIST 525
+ + +P K D L E++ +D R Y+ ++F + ++
Sbjct: 888 ATDDVLAPLEAKLIRYDNLGQPVTEGEADSEEFIDQNDAERAFYKSIREFVSEKASQLAE 947
Query: 526 FQPDAHFGSISENLA--DSVVKYTK----GRTDASHVDKFYDMIFYKNLLSLANPGENVG 579
+ + S A D V+ + ++KF D YK + PG VG
Sbjct: 948 IRQSKNLKSGWSRPASKDDPVQLNAVNQLSKISLKAINKFLDQCIYKYSRAKVEPGTAVG 1007
Query: 580 VLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
+ AQSIGEP TQMTL TFHFAG MNVTLG+PR++EI+ A+K I TP
Sbjct: 1008 AIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII-NASKVISTP 1056
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 78/152 (51%), Gaps = 13/152 (8%)
Query: 866 KHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 925
K ++ TDGI + + H+L++ ++ GIEAA II E+ + +G+
Sbjct: 1222 KQVMSTDGI-IGTKTTTNHVLEVFEVL-----------GIEAARASIIGEIDYTMSKHGM 1269
Query: 926 EVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSL 984
VDPRH+ L+ D M++ G + + R G+ ++ S +Q +FE + + A+ ++D +
Sbjct: 1270 SVDPRHIQLLGDVMSYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDQI 1329
Query: 985 RAPSARVMLGQECRQGTGLFQLRNREKKKKKV 1016
S ++LGQ GTG FQL + KV
Sbjct: 1330 EGVSECIILGQTMSIGTGAFQLVKSSPYEPKV 1361
>gi|389744278|gb|EIM85461.1| beta and beta-prime subunits of DNA dependent RNA-polymerase [Stereum
hirsutum FP-91666 SS1]
Length = 1404
Score = 260 bits (665), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 196/629 (31%), Positives = 302/629 (48%), Gaps = 47/629 (7%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLV-YQALCI 71
+ EA LMNV + P++G P+ IQD + + LS RD F R ++ + Y A
Sbjct: 509 RTEALELMNVKHNMVTPRNGEPVIAAIQDFITASYLLSRRDQFFDRRQFTQICSYFADAD 568
Query: 72 LNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQY 131
L +I PPTIWKP+ LWTGKQV + V+++ K V++ + + ++++ S Y
Sbjct: 569 LQIDIP--PPTIWKPVRLWTGKQVFN-VLMHPNKKSNVLV---NVETKCNNQQKPDSKAY 622
Query: 132 GLVH------AVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAV-WDTHGAEHAISLLS 184
+ + D + I + E++ G++DK G + +V + +G A + ++
Sbjct: 623 PRIKDPAPDLSPNDGWLVIVNSEIMCGVMDKATVGGGKKKMVFGIIMRDYGPHEAAAAMN 682
Query: 185 CLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPE 244
LAKL +L GF+LG+ D++ K+ ++ KA + A L+ P
Sbjct: 683 RLAKLCARWLANFGFSLGINDVIPGPILSEKKDDLVEKAYAKCLDMITLAKKGKLENKPG 742
Query: 245 IISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESG 304
Q EA S +L KV + Q+C+ E P M G
Sbjct: 743 CDQEQTLEAMIS-------------GVLSKVREEVGQICMEELSRHNAPL----IMATCG 785
Query: 305 AKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQP 364
+KGS +N Q+ +GQ + G R R+LP F P + GFV F +G+ P
Sbjct: 786 SKGSVINVSQMVACVGQQIIAGHRVPDGFQDRSLPHFPKKSREPPSKGFVRNSFYSGLSP 845
Query: 365 QEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGE 424
EF FH ++GREGL+DTAVKT+ +GY+QR L+K LE LT YD++VR++ ++Q YG+
Sbjct: 846 TEFLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLTTQYDLSVRNATGGVVQFRYGD 905
Query: 425 DGLDVTKRQYLTDKQ-FSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNF 483
DGLD + D Q F+ W + + L+ L +L +T + K F
Sbjct: 906 DGLDPACLE--GDAQPIEFVR---AWSHAASIAGRSLRG--LLPYEVLEITDRELAKQRF 958
Query: 484 IF---SPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLA 540
+ + +LE AR+ R F A + + D G+ + A
Sbjct: 959 TVECSAAYIATIRSFVLENVATRLADARQS-RGMFDALYREAEWDEETDLSMGATA---A 1014
Query: 541 DSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHF 600
+ + K + + F ++ + K + + PG VG + AQSIGEP TQMTL TFHF
Sbjct: 1015 EKAIVDNKAKVTEDQLLSFLNICWTKYVRAKIEPGSTVGAVGAQSIGEPGTQMTLKTFHF 1074
Query: 601 AGRGDMNVTLGIPRLREILMMATKAIKTP 629
AG MNVTLG+PR++EI+ A K I TP
Sbjct: 1075 AGVASMNVTLGVPRIKEII-NAAKVISTP 1102
Score = 63.2 bits (152), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N + A GIEAA II E++ +G+ +DPRH+ L+ D MT+ G + + R G+
Sbjct: 1271 NHVIETAQVLGIEAARLTIINEIQYTMGSHGMSIDPRHVMLLGDVMTYKGEVLGITRFGV 1330
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLG 994
++ S + +FE + + AS G+ DS+ S +++G
Sbjct: 1331 AKMKDSVLMLASFEKTTDHLFDASAWGKTDSVAGVSESIIMG 1372
>gi|145342014|ref|XP_001416093.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576317|gb|ABO94385.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 1395
Score = 260 bits (665), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 201/666 (30%), Positives = 319/666 (47%), Gaps = 77/666 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLV-YQALCI 71
+AEA LM V PK+G L QD + + L+++D F R+++ +LV Y +
Sbjct: 529 RAEAMQLMGVQHNLCTPKNGEILIAATQDFLTAAFLLTIKDAFFDRSQFGSLVAYMGDAL 588
Query: 72 LNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQY 131
L+ ++ T P I KP+ LWTGKQV S V+I D + + + E+ + +KK
Sbjct: 589 LSVDLPT--PAILKPIELWTGKQVFS-VLIRPKASDHIYV-NLEVAEKLYNKKD------ 638
Query: 132 GLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKLF 190
D +V I++ E++SG L K GS + GL + + +GAE A + ++ LAKL
Sbjct: 639 -KTMCPDDGYVCIQNSEIISGQLGKATLGSGNKSGLFYVLNIEYGAEAAANAMNRLAKLS 697
Query: 191 TVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTE--AACNALGLPLDTDPEIISS 248
+L GF++G+ D+ E ++ + I R E A+ LPL
Sbjct: 698 ARWLGTRGFSIGIDDVSPAAELSAEKGRRIEDGYRTCDERIASYEKGTLPLQA-----GC 752
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQF-MVESGAKG 307
+E ++ + +L V CL + P N M G+KG
Sbjct: 753 NAEET----------LEAEVLGVLSAVREAAGNACL-----KALPRRNAPLIMALCGSKG 797
Query: 308 STVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEF 367
ST+N Q+ +GQ + G RP + R+LP F E +P A GFV F +G++P EF
Sbjct: 798 STINISQMIACVGQQAVGGSRPPDGFAERSLPHFRRGEKTPAAKGFVANSFFSGMRPTEF 857
Query: 368 FFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL 427
FFH MAGREGL+DTAVKT+ +GY+ R L+K LE L++ YD TVR+S ++Q+ YG+DG+
Sbjct: 858 FFHTMAGREGLVDTAVKTAETGYMSRRLMKALEDLSLQYDGTVRNSMGGIVQLRYGDDGM 917
Query: 428 DVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSP 487
+ T + + F + ++N+ G + P
Sbjct: 918 EPTMMESEDAQPIEF----------KRCLMNV------------------RGLNSARGEP 949
Query: 488 HRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYT 547
T+ +D ++ +++ + A + L+ + F EN+ ++
Sbjct: 950 PATRSALDAALDQFKRNNRIINVDEEGESAETRELVYSAGISQLF---YENMRTFIINEV 1006
Query: 548 KGRTDASHVD-----KFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAG 602
+ +D ++ F D K PG VG + AQSIGEP TQMTL TFHFAG
Sbjct: 1007 ESPSDGVYMSDRQMKAFLDACARKYTEKRIEPGTAVGAIGAQSIGEPGTQMTLKTFHFAG 1066
Query: 603 RGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKS-MTRITMADV 661
MN+TLG+PR++EI+ A+K I TP + + D + KA R+ K + + T+ ++
Sbjct: 1067 VASMNITLGVPRIKEII-NASKNISTPIITASLMSDR---DVKAARVVKGRVEKTTLGEI 1122
Query: 662 LEKVKI 667
++ I
Sbjct: 1123 CSEINI 1128
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 65/120 (54%), Gaps = 1/120 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N + T GIEAA II E+ + +G+ +D RH L+AD MT+ G + + R G+
Sbjct: 1258 NHVMECERTLGIEAARACIIEEIDSTMGAHGMSIDNRHSMLLADVMTYKGEVLGITRFGM 1317
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNREKK 1012
++ S + +FE + + A++ GR D + S +++G GTG+F+L++R K
Sbjct: 1318 AKMKDSVLMLASFEKTTDHLFDAALHGRTDYIDGVSECIIMGIPMPIGTGMFRLQHRAMK 1377
>gi|342182785|emb|CCC92265.1| putative DNA-directed rna polymerase I largest subunit [Trypanosoma
congolense IL3000]
Length = 1782
Score = 260 bits (664), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 164/454 (36%), Positives = 234/454 (51%), Gaps = 55/454 (12%)
Query: 14 AEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCILN 73
AE +LM+ +S YLVP G P+ GLIQDHV +G L++ D F R + LV+ L
Sbjct: 650 AEVDYLMDANSNYLVPTSGRPIRGLIQDHVAAGVLLTVPDKFFDRISFTQLVFNGLGPYI 709
Query: 74 TEIRTL-------PPTIWKPMPLWTGKQVLSTVI---INLTPKDKVIIRHGELLSGILDK 123
++ PP I KP PLWTGKQ++S ++ L D+ G +
Sbjct: 710 QGPNSVGLSELIPPPAILKPRPLWTGKQLISVIVQFVSGLYDGDQSDKHDGGVSLKGTSL 769
Query: 124 KQFGSTQYGLVH----------AVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDT 173
Q G+ Y + A+ D V ++ ELL G+L KKQ G++ + H V +
Sbjct: 770 IQAGAFSYPDLETEKVITFSDKALPDCSVHFKNSELLVGLLCKKQLGASYMSISHLVHEL 829
Query: 174 HGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACN 233
+G L L ++ + L++ G +LG+ D+ V E R R
Sbjct: 830 YGPHKVGQLFGALGRVLLLTLRKEGLSLGMDDMCVAHEDLRCR----------------- 872
Query: 234 ALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFP 293
+ + D +++ + EA A +P+ R I + +P ++ PFP
Sbjct: 873 ---MLRELDRSVLNLEDDEAVA-VPKIMEHATR------------IQREFMPGRMLVPFP 916
Query: 294 ANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGF 353
N+L M SGAKGS N +Q+S +LGQ +G R M S +TLP+F E R+ GF
Sbjct: 917 TNHLLLMTTSGAKGSNANAVQMSLVLGQQLFDGMRVKRMNSAKTLPAFFFNEKRARSFGF 976
Query: 354 VDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDS 413
G F TGI+P E+ H MAGR+GLIDTAVKTSRSG+LQRCL+K LE L VH+D TVRDS
Sbjct: 977 AMGSFATGIRPSEYTIHSMAGRDGLIDTAVKTSRSGHLQRCLIKGLESLVVHWDHTVRDS 1036
Query: 414 DLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNI 447
+ S++Q +YG DGLD K LT + L++N+
Sbjct: 1037 NGSVVQFMYGGDGLDPCKACTLT--AWDMLKENV 1068
Score = 86.3 bits (212), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 70/111 (63%), Gaps = 2/111 (1%)
Query: 555 HVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPR 614
+ D ++ ++ + + +PGE+VG+LAAQ+ GEPSTQMTLNTFH AG +VT GIPR
Sbjct: 1177 YTDALENLTAHRRMRAFCDPGESVGLLAAQAAGEPSTQMTLNTFHTAGSTVTHVTEGIPR 1236
Query: 615 LREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKV 665
LRE+L+ ++ ++ ++ +P + + K R+ ++ I +AD L +
Sbjct: 1237 LRELLIFSS--VQKAAVIVPVVKTEARDNKLITRIIRAGVAIKLADCLARC 1285
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 74/135 (54%), Gaps = 6/135 (4%)
Query: 876 VNFISQY---RHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHL 932
++F+S + R + L++ + D+ M + +GIE+A + + +E++ +F Y VD RHL
Sbjct: 1634 MSFLSLFTVGRKSIQLDRAFSTDVRDMGNYFGIESAYKALYQELQKLFRRY--SVDRRHL 1691
Query: 933 SLVADYMTHSGTYVAMNRNG-IRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARV 991
L++D TH G + N G + + S + +MTF + A +G D L++ S+ +
Sbjct: 1692 MLISDAATHRGRWENYNFTGVVSQSASPLFQMTFASSARWLHMAVSRGMPDDLQSLSSAI 1751
Query: 992 MLGQECRQGTGLFQL 1006
M+G+ R GT ++
Sbjct: 1752 MVGERPRVGTAFVRV 1766
>gi|448115320|ref|XP_004202788.1| Piso0_001648 [Millerozyma farinosa CBS 7064]
gi|359383656|emb|CCE79572.1| Piso0_001648 [Millerozyma farinosa CBS 7064]
Length = 1454
Score = 260 bits (664), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 204/679 (30%), Positives = 324/679 (47%), Gaps = 79/679 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + L PK G P+ QD + +S +D+F RA + ++ +
Sbjct: 524 RAEAMNLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFYDRAALVQML-SMMSDA 582
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQ--FGSTQ 130
N + PP I+KP+ LWTGKQ+ S ++I K KV+I LD K F
Sbjct: 583 NVQYDIPPPAIFKPVMLWTGKQLFS-LLIRPNKKSKVLIN--------LDAKNKTFIPPL 633
Query: 131 YGLVHAVW--DTHVTIRHGELLSGILDKKQFG-STQYGLVHAVWDTHGAEHAISLLSCLA 187
G + + D V IR ++LSG++DK G ++ + + + +G + A + ++ +A
Sbjct: 634 KGFPNEMSQNDGFVVIRGSQILSGVMDKSLLGDGKKHSVFYTILRDYGPDEAANAMNRMA 693
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIIS 247
KL ++ GF++G+ D++ R E +K+ ++ +A E + L+T P
Sbjct: 694 KLCARFMGNRGFSIGINDVIPRSELKQKKELMVEQAYLKCDELIDSYNRGKLETQPGCNE 753
Query: 248 SQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKG 307
Q EA + LL KV + ++C+ E AN M G+KG
Sbjct: 754 EQTLEA-------------KIGGLLSKVREQVGEICIKE----LDSANAPLIMATCGSKG 796
Query: 308 STVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEF 367
ST+N Q+ ++GQ + G R R+LP F +P++ GFV F +G+ P EF
Sbjct: 797 STLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFTKNSKTPQSKGFVRNSFFSGLSPTEF 856
Query: 368 FFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY---GE 424
FH ++GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR+S ++Q Y G
Sbjct: 857 LFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDNTVRNSSNGVVQFTYGGDGL 916
Query: 425 DGLDVT--------KRQYLTDKQFSFLED-NIKWICSYKVILNLLKK--HPLSLALLL-- 471
D LD+ RQ+ D F+ D + + Y+ ILN + +PL L+
Sbjct: 917 DPLDMEGDARPVNFNRQW--DHAFNVTFDVKDRGLKPYE-ILNAVNYVLNPLEKKLVRYS 973
Query: 472 ----LLTFKSSGKPNF--------IFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACP 519
+L+ + S K + IF +F + Q+ + R+ + ++
Sbjct: 974 NSGKILSLEDSDKIEYADEKDAERIFYNSIREFITEKAVSLAQI--RERRNLKPSLRSPN 1031
Query: 520 QPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVG 579
+ +A ++++ L + + F D YK + PG VG
Sbjct: 1032 DDEMDVVDDEACLNAVNQLL----------KISEKAIRSFLDQCVYKYFRAKVEPGTAVG 1081
Query: 580 VLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDM 639
+ A SIGEP TQMTL TFHFAG MNVTLG+PR++EI+ A+K I TP + + D
Sbjct: 1082 AIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII-NASKVISTPIINSVLVNDD 1140
Query: 640 PKLEKKANRLAKSMTRITM 658
+++A R+ K T+
Sbjct: 1141 ---DERAARVVKGRIEKTL 1156
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 76/142 (53%), Gaps = 13/142 (9%)
Query: 866 KHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 925
K+++ TDG+ V + H+L++ ++ GIEAA II+E+ +G+
Sbjct: 1297 KNVMSTDGV-VGTKTTTNHVLEIFQVL-----------GIEAARASIIKEIDYTMTNHGM 1344
Query: 926 EVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSL 984
VDPRH+ L+ D MT+ G + + R G+ ++ S +Q +FE + + AS +ED +
Sbjct: 1345 SVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDASFYMKEDKI 1404
Query: 985 RAPSARVMLGQECRQGTGLFQL 1006
S ++LGQ GTG F+L
Sbjct: 1405 EGVSECIILGQTMNIGTGAFKL 1426
>gi|403375855|gb|EJY87901.1| RNA polymerase III [Oxytricha trifallax]
Length = 1365
Score = 259 bits (663), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 206/649 (31%), Positives = 319/649 (49%), Gaps = 77/649 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM+V L+P+ G PL QD + S ++ +D FL R E+M +
Sbjct: 466 RAEARILMDVKQNLLIPRSGEPLIAPTQDFLTSSYLITQKDKFLNRNEFMQIC-AYFWDA 524
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N +I PPTI KP+ LWTGKQ+++ + L P K + ++ ++ G ++
Sbjct: 525 NEKIEIPPPTIIKPVELWTGKQIINVL---LRPNRKSYVYVNTVVK---ERNYSGVGEHM 578
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKLFT 191
+ W V ++ EL+ G L K GS ++ GL +++ + E A + +AK
Sbjct: 579 CPNDGW---VIFQNSELICGNLCKTTMGSGSKTGLFYSLQRDNSVEVAAQCMLRVAKFSA 635
Query: 192 VYLQRVGFTLGVRDI-----LVRQERDRKRTKIIN--------KARRLGTEAACNALGLP 238
++ G ++G+ D+ L+ +++ +N K +L +A CN
Sbjct: 636 RWIGSHGMSIGISDVTPFGLLIEEKQKLLEAGYVNCDKLIEQYKQGKLVLKAGCN----- 690
Query: 239 LDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQ 298
PE Q E+Y ++ + + DK +I + LP+ N+
Sbjct: 691 ----PE----QTLESY---------LNGELSKIRDK-AGDILKSKLPK-------YNSPL 725
Query: 299 FMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRF 358
M G+KGS +N Q+ L+GQ + G+R R+LP F PY P + GFV F
Sbjct: 726 IMAICGSKGSNINLCQMIALVGQQTVNGQRMPNGFFDRSLPHFEPYSKYPASKGFVGNSF 785
Query: 359 MTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLI 418
+G+ EFFFH + GREGL+DTAVKT+ +GY+QR L+K LE L+V YD TVR S +I
Sbjct: 786 YSGLTATEFFFHTIGGREGLVDTAVKTAETGYMQRRLMKALEDLSVKYDDTVRTSTEHII 845
Query: 419 QVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALL----LLLT 474
Q YG+DGLD F++DN S K ++ ++K++ A + +LL
Sbjct: 846 QFQYGDDGLDPM-----------FMDDN-SLPVSLKRLMIMIKENTKQTAKVINEDILLP 893
Query: 475 FKSSGKPNFIFSPHRTK-FTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFG 533
F+ + I+ K +M +EQ+ + D + K + L +
Sbjct: 894 FQIDQFKDKIYEICPVKNISMKFIEQFKEFLDTIINQVAK--QRTDLGLKDGLKQIPTEQ 951
Query: 534 SISENLADSVV-KYTKGRT--DASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPS 590
I + D VV K + T S ++ F ++++ K + PGE VG +AAQSIGEP
Sbjct: 952 EIKKERFDKVVQKLLRNFTFLTLSQLEDFTNLVWLKYRRAQIQPGEAVGAVAAQSIGEPG 1011
Query: 591 TQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDM 639
TQMTL TFHFAG MNVTLG+PR++EI+ ATK I TP + + D+
Sbjct: 1012 TQMTLKTFHFAGVASMNVTLGVPRIKEII-NATKEISTPIISARLVNDV 1059
Score = 72.8 bits (177), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 76/147 (51%), Gaps = 2/147 (1%)
Query: 861 EEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 920
E+ +SKH L +G + + + D N + GIEAA + II E++
Sbjct: 1183 EQDQSKHHLLVEGYGLKQVMSTPGI-DFRSTKSNHVIETEQVLGIEAARQTIINEIQYTM 1241
Query: 921 AVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQG 979
+G+ +DPRH+ L+AD MT G + + R G+ ++ S + +FEM + + +++
Sbjct: 1242 QSHGMNIDPRHIQLLADIMTFKGQVLGITRFGVSKMKNSTLMLASFEMTTDHLYDSAVHC 1301
Query: 980 REDSLRAPSARVMLGQECRQGTGLFQL 1006
++D + S +++G GTGLF++
Sbjct: 1302 KKDEISGVSECIIMGNMIPIGTGLFKV 1328
>gi|402226085|gb|EJU06145.1| subunit of DNA dependent RNA-polymerase [Dacryopinax sp. DJM-731 SS1]
Length = 1455
Score = 259 bits (663), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 204/669 (30%), Positives = 303/669 (45%), Gaps = 87/669 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLV-YQALCI 71
+ EA LM+V + P++G P+ QD V + LS RDTF R + + Y A +
Sbjct: 516 RTEALELMSVKKNLVTPRNGEPVIAATQDFVTAAYLLSNRDTFYDRRAFTQICTYMADAL 575
Query: 72 LNTEIRTLPPTIWKPMPLWTGKQVL---------STVIINL-TP---KDKVIIRHGELLS 118
+I PPTIW+P LWTGKQ+ S V++N+ +P +K R+ L
Sbjct: 576 --EDIDLPPPTIWRPECLWTGKQIFNVLMRPNSKSRVLVNVESPCNRGEKPTARYYPLSL 633
Query: 119 GILDKKQFGSTQYGLVH------------------------------AVWDTHVTIRHGE 148
L + G Q+ + D + I + E
Sbjct: 634 RTLKPGRSGDPQFSFAELERQAEEAEKTGKMKDDPYADFCQPLPMDLSPNDGWLVIVNSE 693
Query: 149 LLSGILDKKQFGSTQYGLVH-AVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDIL 207
++ G++DK GS + V A+ G + A + ++ LAKL +L GF+LG+ D+
Sbjct: 694 IMCGVMDKATVGSGKKKSVFGAMLRDFGPDAAAAGMNRLAKLCGRWLSNFGFSLGISDVT 753
Query: 208 VRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQ 267
E ++ K++ KA TE A L P Q EA S
Sbjct: 754 PGAELRARKEKMVVKAYDDCTELIQQAKLGKLANKPGCDQDQTLEASIS----------- 802
Query: 268 YKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGK 327
S+L KV ++ +C+ E I P + M G+KGS +N Q+ +GQ + GK
Sbjct: 803 --SILSKVRESVGDICMKELSIHNAP----RLMSICGSKGSVLNVSQMIACVGQQIIGGK 856
Query: 328 RPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSR 387
R R+LP F P + GFV F TG++P EF FH ++GREGL+DTAVKT+
Sbjct: 857 RVPDGFQERSLPHFPKKSREPPSKGFVSNSFYTGLRPTEFLFHAISGREGLVDTAVKTAE 916
Query: 388 SGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNI 447
+GY+QR L+K LE L HYD +VR S ++Q +G+DGLD + Q ++ +
Sbjct: 917 TGYMQRRLMKALEDLVTHYDTSVRTSSGGIVQFRFGDDGLDPG----CLEGQAQPVDFDR 972
Query: 448 KWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPHRTKFT-------MDLLEQW 500
W+ + + + LL F+ N I R KF +D L +
Sbjct: 973 AWMHAGAITARDGRA---------LLPFEIMDLTNEIL--QRRKFKTECSTQYLDSLRAY 1021
Query: 501 YQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFY 560
Q + R+++K S+ + + + ++HV+ F
Sbjct: 1022 IQAIARHLGNVRQEYKMYDAVDRDDDWDADTDLSLGAGEKEQQALENRIKITSAHVESFL 1081
Query: 561 DMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILM 620
+ + K + S PG VG + AQSIGEP TQMTL TFHFAG MNVTLG+PR++EI+
Sbjct: 1082 NTCWAKYVKSKIEPGSTVGAVGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII- 1140
Query: 621 MATKAIKTP 629
A K I TP
Sbjct: 1141 NAAKVISTP 1149
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N + + GIEAA II E++ +G+ +DPRH+ L+ D MT+ G + + R G+
Sbjct: 1320 NHVIEVGKVLGIEAARSTIIHEIQYTMENHGMNIDPRHVMLLGDVMTYKGEVLGITRFGV 1379
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLG 994
++ S + +FE + + A+ G+ D++ S +++G
Sbjct: 1380 AKMKDSVLMLASFEKTTDHLFDAAAYGKSDAILGVSESIIMG 1421
>gi|164657764|ref|XP_001730008.1| hypothetical protein MGL_2994 [Malassezia globosa CBS 7966]
gi|159103902|gb|EDP42794.1| hypothetical protein MGL_2994 [Malassezia globosa CBS 7966]
Length = 1376
Score = 259 bits (662), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 197/667 (29%), Positives = 315/667 (47%), Gaps = 67/667 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLV-YQALCI 71
+ EA LM V + P++G P+ QD + + LS R F TRA+++ + Y
Sbjct: 493 RTEALTLMGVKHNLVTPRNGEPIVAATQDFITAAFLLSRRGRFFTRAQFVQICSYFGDAS 552
Query: 72 LNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQY 131
L+ ++ PP I KP+ LWTGKQ+ S +I K ++ + E +K + G
Sbjct: 553 LHIDLP--PPAILKPVRLWTGKQLFSCMI--RPNKQSPVLVNLEARCRTFEKPRDGHVNE 608
Query: 132 GLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAV-WDTHGAEHAISLLSCLAKLF 190
+ D ++ I++ E+L G++DK G + V V +G + A++ ++ LAK
Sbjct: 609 ---MSPNDGYLVIQNSEVLCGVMDKATVGDGKKQSVFGVILRDYGPDAAVASMNRLAKTC 665
Query: 191 TVYLQRVGFTLGVRDIL----VRQERDRKRTKIINKARRLGTEAACNAL-GLPLDTDPEI 245
+L GF+LG+ D+ +R+ +DR + R L A L LP +
Sbjct: 666 ARWLSNQGFSLGIGDVTPGQHLRETKDRNVEIAYRQCRDLIELAKRGKLENLPGCDQEQT 725
Query: 246 ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGA 305
+ S++ +L V +++ ++C+ E N M G+
Sbjct: 726 LESKIS------------------GVLSSVRSDVGEICM----TELSRHNAALLMSVCGS 763
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS +N Q+ +GQ + G R R+LP F P + GFV F +G++P
Sbjct: 764 KGSKINVAQMVACVGQQIISGSRVPNGFQDRSLPHFPKKSKDPPSKGFVRNSFFSGLEPT 823
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EF FH ++GREGL+DTAVKT+ +GY+QR L+K LE L+ HYD +VR+S+ ++Q LYG+D
Sbjct: 824 EFLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLSTHYDFSVRNSEGGVVQFLYGDD 883
Query: 426 GLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIF 485
GLD + LE N + Y + LL ++ N +
Sbjct: 884 GLDPAE-----------LEGNALPV-EYNRTFRHASAKTADVPSRYLLPYEVMDLVNHLL 931
Query: 486 SPHR------TKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFG-----S 534
S R +K+ + E Y+ K + R+ + P + D + S
Sbjct: 932 SQDRFERVCTSKYIDQVREFCYEQVAKRMAETREAYGMYP-----ALERDGDWDVDTDLS 986
Query: 535 ISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMT 594
+ + A V K R + + +F ++ + K + + PG VG + AQSIGEP TQMT
Sbjct: 987 LGADDAQRAVVENKVRVSEATILEFINLCWDKYMRAKIEPGSAVGAVGAQSIGEPGTQMT 1046
Query: 595 LNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMT 654
L TFHFAG MNVTLG+PR++EI+ A K I TP + + + K E+ A + +
Sbjct: 1047 LKTFHFAGVASMNVTLGVPRIKEII-NAAKVINTPIIAATLVSE--KSEQAARIVKGRIE 1103
Query: 655 RITMADV 661
+ + DV
Sbjct: 1104 KTYLGDV 1110
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 892 YVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRN 951
+ N + M GIEAA I RE+ A +G+ +DPRH+ L+AD MT+ G + + R
Sbjct: 1243 HTNHVMEMQQVLGIEAARSSIYREIDYTMASHGMSIDPRHVMLLADVMTYKGEVLGITRF 1302
Query: 952 GI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQ-GTGLFQL 1006
G+ ++ S + +FE + + A++ G+ DS+ S +++G + GTG+ L
Sbjct: 1303 GVAKMKDSVLMLASFEKTTDHLFDAALFGKSDSISGVSESIIMGNPAQTVGTGMPAL 1359
>gi|313241408|emb|CBY33677.1| unnamed protein product [Oikopleura dioica]
Length = 1360
Score = 259 bits (662), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 203/679 (29%), Positives = 313/679 (46%), Gaps = 67/679 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
++EA LM V S L + G PL IQD + + L+ +D F T E++ L+
Sbjct: 451 RSEAMVLMGVKSNTLTCRSGEPLVASIQDFITAMYLLTQKDVFFTHQEFLRLITTVTARN 510
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+R P I +P PLW+GKQV S+ I K K I R + G ++
Sbjct: 511 KGRLRIPHPCILRPTPLWSGKQVFSSEI----EKGKWIWRGTACV---------GYSKNS 557
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKLFT 191
D+ V IR+ EL++G +DK GS ++ + + + +G E A + + ++
Sbjct: 558 PEMICNDSWVLIRNSELVAGTMDKNSLGSGSKKQVFYMLTRDYGEEAAAQAMWRMCRIGP 617
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQ 251
YL GF++G+ D+ + K+ K+I + R E L P + +
Sbjct: 618 RYLSNRGFSIGIGDVWASENLLDKKMKVIGEQYRKVDEHILAKKHNKLKLQPGCTADETL 677
Query: 252 EAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVN 311
E + L K+ ++ + C E P N M G+KGS +N
Sbjct: 678 ENIV-------------QKELSKIRDDAAKACFAELSKFNTPLN----MALCGSKGSNIN 720
Query: 312 TMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHC 371
Q+ +GQ L G R R+LP F P++ GFV F +G+ P EFFFH
Sbjct: 721 IAQMVACVGQQVLSGSRIPNGFEARSLPHFERDSKDPKSRGFVQNSFFSGLTPTEFFFHT 780
Query: 372 MAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD--- 428
M GREGL+DTAVKT+ +GY+QR LVK LEGL V YD TVR++D +IQ YGED LD
Sbjct: 781 MGGREGLVDTAVKTASTGYMQRRLVKALEGLCVQYDGTVRNTDDRVIQFTYGEDQLDPQE 840
Query: 429 -------VTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKP 481
V + TD F + +C + I +L+++ + + G
Sbjct: 841 MEGDSRPVDFDRVWTDSICRFGSQKDRALCCDE-IKDLVRESVEKVKKDKRFKYNDEGFG 899
Query: 482 ----NFI------FSPHRTKFTMDLLEQW--YQLDDKARKKYRKKFKACPQPLISTFQPD 529
NF+ F+ + E + Y D+ R +Y Q L +T + D
Sbjct: 900 VGFRNFLDNTTIEFADKQADIVKSHWESYGVYAKSDEERARY--------QALRTTAKQD 951
Query: 530 AHFGSISENLADSVVKYTKGR-TDASHVDK-FYDMIFYKNLLSLANPGENVGVLAAQSIG 587
+++ +ADSV + +D + + K F + K + PG VG + A SIG
Sbjct: 952 ELSSDLTQTVADSVFLHLCAYLSDQTILFKLFVERCALKYFKARMEPGTCVGAICATSIG 1011
Query: 588 EPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKAN 647
EP+TQMTL TFHFAG MN+T G+PR+ +I+ T+ IKTP + + K + A
Sbjct: 1012 EPATQMTLKTFHFAGVASMNITQGVPRIEQII-NNTQKIKTPIIMAKLTTEDSK--EFAQ 1068
Query: 648 RLAKSMTRITMADVLEKVK 666
+A + + T+ ++ E ++
Sbjct: 1069 EVASKLEKTTLGEICEFIQ 1087
Score = 81.3 bits (199), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 80/147 (54%), Gaps = 2/147 (1%)
Query: 861 EEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 920
++KE + + DG ++ + R + D ++ N I + G+EAA II E+ N
Sbjct: 1185 DKKEGFYEMIIDGNDLGGVLATRGI-DWSRTSSNHIPKVFEILGVEAARSTIINEMTNTM 1243
Query: 921 AVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQG 979
+GI VD RHL ++ADYMT++G R G+ ++ S + +FE + + A+ G
Sbjct: 1244 GHHGIHVDRRHLMMLADYMTYTGPVFGCTRIGLANVSNSPLHLSSFEKTSDILYNAAYYG 1303
Query: 980 REDSLRAPSARVMLGQECRQGTGLFQL 1006
+ DSL PSA ++LG GTGLF+L
Sbjct: 1304 QRDSLAGPSAALILGVPIELGTGLFKL 1330
>gi|169869303|ref|XP_001841218.1| DNA-directed RNA polymerase III largest subunit [Coprinopsis cinerea
okayama7#130]
gi|116497686|gb|EAU80581.1| DNA-directed RNA polymerase III largest subunit [Coprinopsis cinerea
okayama7#130]
Length = 1403
Score = 259 bits (661), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 204/663 (30%), Positives = 308/663 (46%), Gaps = 51/663 (7%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+ EA LM+V + P++G P+ IQD + + +S +D F R E+ Q C L
Sbjct: 507 RTEALELMSVKHNLVTPRNGEPVISAIQDFITASFLISRKDRFFDRREFT----QICCYL 562
Query: 73 ---NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR-HGELLSGILDKKQFGS 128
+ I PPTIWKP+ LWTGKQ+ + V++ + K+ I + K Q
Sbjct: 563 GDADLHIDIPPPTIWKPVQLWTGKQIFN-VLMRPNKQSKIFINVESKCQKWEEAKPQNFP 621
Query: 129 TQYGLVHAVW--DTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSC 185
+ L + D + + + E++ G++DK GS + + + +G A +
Sbjct: 622 PRITLQPDLSPNDGWLVVVNSEIMCGVMDKATVGSGKKKSIFGVILRDYGPHEAAIAMGR 681
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEI 245
LAKL YL GF+LG+ D++ ++ ++ KA + A L+ P
Sbjct: 682 LAKLCARYLANYGFSLGINDVIPGPVLSSQKDVLVEKAYADCEDLIALAKKGKLENKPGC 741
Query: 246 ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGA 305
Q EA S S+L KV + Q+C+ E P M G+
Sbjct: 742 NQEQTLEAMIS-------------SVLSKVREEVGQICMKELSRHNAPL----IMATCGS 784
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS +N Q+ +GQ + G R R+LP F +P + GFV F +G+
Sbjct: 785 KGSVINVSQMVACVGQQIIAGHRVPNGFQDRSLPHFPKKSKTPPSKGFVRNSFYSGLVAT 844
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EF FH ++GREGL+DTAVKT+ +GY+QR L+K LE LT YD++VR+S ++Q YG+D
Sbjct: 845 EFLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLTTQYDLSVRNSTGGVVQFQYGDD 904
Query: 426 GLDVTKRQYLTDKQFSFLEDNIKW----ICSYKVILNLLKKHPLSLALLLLLTFKSSGKP 481
GLD + L+ + W S + LL P + ++ T S P
Sbjct: 905 GLDPA----CLEGDAQPLDMDRSWRHAQARSNRKTRGLL---PFEIIQIVETTLAS---P 954
Query: 482 NFIFS--PHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENL 539
F S P D + + + + F A +P + D G+ SE
Sbjct: 955 RFTQSCLPAYCDAVRDFIVKKVASRVASVRAKHDMFDALEKPEEWDEEMDLTLGA-SE-- 1011
Query: 540 ADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFH 599
A V K + SH+ F D+ + + + + PG VG + AQSIGEP TQMTL TFH
Sbjct: 1012 ACKRVVDNKAKVTESHLRIFLDICWERYVKARIEPGSTVGAVGAQSIGEPGTQMTLKTFH 1071
Query: 600 FAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMA 659
FAG MNVTLG+PR++EI+ A KAI TP + + P E A + + + +
Sbjct: 1072 FAGVASMNVTLGVPRIKEII-NAAKAISTPIISCKLV--TPDSEPSARIVKGRLEKTLLG 1128
Query: 660 DVL 662
DV+
Sbjct: 1129 DVV 1131
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N + +A GIEAA R II E++ + + +DPRH+ L+ D MT+ G + + R G+
Sbjct: 1269 NHVIEVAQVLGIEAARRTIINEIQYTMKSHDMNIDPRHVMLLGDVMTYKGEVLGITRFGV 1328
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLG 994
++ S + +FE + + AS G+ DS+ S +++G
Sbjct: 1329 AKMKDSVLMLASFEKTTDHLFDASAYGKTDSIAGVSESIIMG 1370
>gi|170584528|ref|XP_001897051.1| RNA polymerase Rpb1, domain 1 family protein [Brugia malayi]
gi|158595586|gb|EDP34129.1| RNA polymerase Rpb1, domain 1 family protein [Brugia malayi]
Length = 1404
Score = 259 bits (661), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 204/685 (29%), Positives = 320/685 (46%), Gaps = 95/685 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEAS LM V S + P+ G PL IQD + L+ +D+F R E A I+
Sbjct: 513 RAEASLLMGVKSNLITPRSGEPLIAAIQDFITGTYLLTHKDSFFPRLEVHRF---AAAII 569
Query: 73 NTE------IRTLPPTIWKPMPLWTGKQVLSTVI---------INLTPKDKVIIRHGELL 117
++ IR PP I KP+ LWTGKQ++ +I +NLT K+K + E
Sbjct: 570 DSSSKKQQRIRIPPPAILKPVELWTGKQLVELIIRPDVDSKISLNLTTKNKSYTGNEEF- 628
Query: 118 SGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGA 176
V D++V IR+ LL G+LDK GS ++ + + + G
Sbjct: 629 ------------------CVKDSYVIIRNSVLLCGVLDKALLGSGSKTNIFYILLRDFGE 670
Query: 177 EHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALG 236
+ A+ + L ++ V+L GF++G+ D+ + ++++ +++ ++ + +
Sbjct: 671 DAAVDAMWRLGRMAPVFLSNRGFSIGIGDVRPSKTLLKEKSDLLSNGYKICDDYIESLKE 730
Query: 237 LPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANN 296
L P + EA I ++ L + ++ Q CL P
Sbjct: 731 GRLKAQPGCTEYETLEAL---------ILKE----LSAIRDHAGQACLRNLSRHNAPLT- 776
Query: 297 LQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDG 356
M G+KGS +N Q+ +GQ + G RP R+LP F + +P A GFV+
Sbjct: 777 ---MAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEDRSLPHFERRQKTPAAKGFVEN 833
Query: 357 RFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLS 416
F +G+ P EFFFH M GREGL+DTAVKT+ +GY+QR LVK LE L V+YD TVR S
Sbjct: 834 SFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCVNYDGTVRSSVGD 893
Query: 417 LIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVIL--------NLLKKHPLSLA 468
+I+ +GEDGLD + +E + +K IL +L++ ++
Sbjct: 894 VIEFTFGEDGLDP-----------ALMEAKDGGVVDFKHILEHTRNTLPHLIEDANTTIN 942
Query: 469 LLLLLTFKS----SGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLIS 524
L + + GK + +F F + L K KY K K C + +
Sbjct: 943 ELQKVVADTISEIIGKRHAMFREQLESFINEYL--------KRTNKYYKLPKNCTKHM-D 993
Query: 525 TFQPDAHFGSISENLADSVVKYTKGRTDA---SHVDKFYDMIFYKNLLSLANPGENVGVL 581
+ P A + +N + T+ R+ + F + K ++ PG VG +
Sbjct: 994 NWMPSATHCNDCKN--QKFFRETEIRSHCLSRAQAVAFIKLCLRKFRRAICEPGTAVGAV 1051
Query: 582 AAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPK 641
AA SIGEPSTQMTL TFHFAG MN+T G+PR++EI+ K I TP + + K
Sbjct: 1052 AATSIGEPSTQMTLKTFHFAGVASMNITQGVPRIKEII-NGVKLISTPLITAALTNE--K 1108
Query: 642 LEKKANRLAKSMTRITMADVLEKVK 666
EK A R+ + + T+ ++ + ++
Sbjct: 1109 DEKLARRVKARIEKTTLGEICDYIE 1133
Score = 77.4 bits (189), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 81/152 (53%), Gaps = 12/152 (7%)
Query: 861 EEKESKHLLKTDGINVNFISQYRHLL-----DLNKLYVNDIHYMASTYGIEAANRVIIRE 915
E+K + L +GI+ YR ++ D + Y N+ +A GIEAA II E
Sbjct: 1233 EKKGDSYKLLVEGID------YREVMATLGVDGRRTYFNNALTVADVLGIEAARSSIISE 1286
Query: 916 VKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNG-IRLNPSFIQKMTFEMPLEKIRQ 974
+ + A +GI +D RH+ L+AD MT+ G + + RNG +++ S + +FE + + +
Sbjct: 1287 ILSTMASHGIGLDQRHVMLLADLMTYRGEVLGITRNGLVKMKESVLLLASFEKTADHLFE 1346
Query: 975 ASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
A+ +ED + S ++LG GTGLF+L
Sbjct: 1347 AAFFSQEDKICGVSECIILGTPITIGTGLFKL 1378
>gi|302308245|ref|NP_985109.2| AER252Cp [Ashbya gossypii ATCC 10895]
gi|299789362|gb|AAS52933.2| AER252Cp [Ashbya gossypii ATCC 10895]
gi|374108334|gb|AEY97241.1| FAER252Cp [Ashbya gossypii FDAG1]
Length = 1459
Score = 258 bits (660), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 212/698 (30%), Positives = 319/698 (45%), Gaps = 103/698 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + L PK G P+ QD + +S +D+F RA ++ ++ +
Sbjct: 527 RAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRATFVQML-SMMSDG 585
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLS---------TVIINLTPKDKVIIRHGELLSGILDK 123
N + PP I +P LWTGKQ+ S VIINL K+KV I
Sbjct: 586 NLQFDIPPPAIMRPHYLWTGKQLFSLLIKPNKKSPVIINLDAKNKVYIAPK--------- 636
Query: 124 KQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFG-STQYGLVHAVWDTHGAEHAISL 182
+ Y + D +V IR +LSG++DK G ++ + + + G + A
Sbjct: 637 ----NKAYPNEMSANDGYVVIRGSNILSGVMDKSVLGDGKKHSVFYTILRDFGPQEATQA 692
Query: 183 LSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNAL-----GL 237
++ +AKL YL GF++G+ D+ E + +++ A A C+ L
Sbjct: 693 MNRMAKLCARYLGNRGFSIGISDVTPGVELKATKEEMVEIAY-----AKCDELIDLYKRG 747
Query: 238 PLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPE--GLIEPFPAN 295
L+T P Q EA + LL KV + VC+ E L P
Sbjct: 748 KLETQPGCNEEQTLEA-------------KIGGLLSKVREEVGDVCIRELDNLNAPL--- 791
Query: 296 NLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVD 355
M G+KGS +N Q+ ++GQ + G R R+LP F +P++ GFV
Sbjct: 792 ---IMATCGSKGSNLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTPQSKGFVR 848
Query: 356 GRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDL 415
F +G+ P EF FH ++GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR S
Sbjct: 849 NSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTSSN 908
Query: 416 SLIQVLYGEDGLDVT-----------KRQYLTDKQFSFLEDNIKWICSYKVI--LNLLKK 462
++Q YG DGLD R + ++ D+ K + Y+++ N +
Sbjct: 909 GIVQFTYGGDGLDPLNMEGNAKPVNFNRSWDHANNITYNHDD-KGMLPYQILEETNAI-L 966
Query: 463 HPLSLALLLLLTFKSSGKPNFIFSPHRTKFTM-----DLLEQWYQ-----LDDKARK--- 509
HPL L + + G P +P + D ++YQ + +KARK
Sbjct: 967 HPLEQQ---LSRYDNVGNP---LAPGLENEELYIDQHDAEREFYQSLRTYMSEKARKLAD 1020
Query: 510 --KYR--KKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFY 565
K R K+ P + DA + + + K + + V F D+
Sbjct: 1021 IRKSRGLKELYHAPALELQLMDLDASCPEVDVKSVNQLCKIS-----SKLVRTFLDIAIS 1075
Query: 566 KNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKA 625
K + PG VG + A SIGEP TQMTL TFHFAG MNVTLG+PR++EI+ A+K
Sbjct: 1076 KYRKAKVEPGTAVGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII-NASKV 1134
Query: 626 IKTPSMEIPFLPDMPKLEKKANRLAKSMTRIT-MADVL 662
I TP + + D +++A R+ K T ++DV+
Sbjct: 1135 ISTPIINATLVNDD---DERAARVVKGRVEKTLLSDVI 1169
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 79/149 (53%), Gaps = 13/149 (8%)
Query: 859 LFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKN 918
L E + ++ TDG+ V + ++ H L+ V D+ GIEAA II E+
Sbjct: 1293 LVEGYGLRDVMTTDGV-VGYKTKTNHFLE-----VYDV------LGIEAARTSIIDEIDY 1340
Query: 919 VFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASM 977
+ +G+ VDPRH+ L+ D MT+ G + + R G+ ++ S +Q +FE + + A+
Sbjct: 1341 TMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAF 1400
Query: 978 QGREDSLRAPSARVMLGQECRQGTGLFQL 1006
++D++ S ++LGQ GTG F++
Sbjct: 1401 YMKKDAVEGVSECIILGQTMTIGTGSFKV 1429
>gi|50293727|ref|XP_449275.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528588|emb|CAG62249.1| unnamed protein product [Candida glabrata]
Length = 1459
Score = 258 bits (660), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 206/661 (31%), Positives = 311/661 (47%), Gaps = 94/661 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + L PK G P+ QD + +S +D+F +A L+ +
Sbjct: 528 RAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDKASLTQLL-SMMSDG 586
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVI---------INLTPKDKVIIRHGELLSGILDK 123
+ + PP I KP LWTGKQV S +I INL K+KV I
Sbjct: 587 SLQFDIPPPAIMKPCYLWTGKQVFSLLIKPNKNSPVKINLDAKNKVYI----------PP 636
Query: 124 KQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFG-STQYGLVHAVWDTHGAEHAISL 182
KQ Y + D V +R ++LSG++DK G ++ + + + G + A S
Sbjct: 637 KQ---KHYPNEMSQNDGFVIVRGSQILSGVMDKSVLGDGKKHSVFYTILRDFGPQEAASA 693
Query: 183 LSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNAL-----GL 237
++ +AKL YL GF++G+ D+ + +K+ ++ A A C+ L
Sbjct: 694 MNRMAKLCARYLGNRGFSIGISDVTPADDLKQKKEDLVEIAY-----AKCDELIDLYNKG 748
Query: 238 PLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPE--GLIEPFPAN 295
L+T P Q EA + LL KV + VC+ E L P
Sbjct: 749 KLETQPGCNEEQTLEA-------------KIGGLLSKVREEVGDVCINELDNLNAPL--- 792
Query: 296 NLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVD 355
M G+KGST+N Q+ ++GQ + G R R+LP F +P++ GFV
Sbjct: 793 ---IMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTPQSKGFVR 849
Query: 356 GRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDL 415
F +G+ P EF FH ++GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR S
Sbjct: 850 NSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTSSN 909
Query: 416 SLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLAL------ 469
++Q YG DGLD + + + +F N W +Y + N + L +
Sbjct: 910 GIVQFTYGGDGLDPLEMEG-NAQPVNF---NRSWDHAYNITFNNTDRGLLPYEIKKTVDN 965
Query: 470 LL------LLTFKSSGKP--------NFIFSPHRTK--FTMDLLEQWYQLDDKARKKYRK 513
+L L+ + + G+P + H ++ F L E + D + +
Sbjct: 966 ILKPLEKRLIRYDTLGRPVSAEDDKLDDYVDQHDSERLFYASLRE--FMTDKAKKLAKLR 1023
Query: 514 KFKACPQPL----ISTFQP-DAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNL 568
K + P+ + + + P + H +I ++ S+ + + DA V KF ++ K
Sbjct: 1024 KSRGLPKLIKKSELEGYDPENEHIDAIVQH---SITQLYRITEDA--VQKFLEIAISKYH 1078
Query: 569 LSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKT 628
+ PG VG + AQSIGEP TQMTL TFHFAG MNVTLG+PR++EI+ A+K I T
Sbjct: 1079 RAKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII-NASKVIST 1137
Query: 629 P 629
P
Sbjct: 1138 P 1138
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 64/118 (54%), Gaps = 1/118 (0%)
Query: 890 KLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMN 949
K N + + + GIEAA II E+ + +G+ VDPRH+ L+ D MT G + +
Sbjct: 1312 KTATNHVLEIFNVLGIEAARASIIGEIDYTMSNHGMSVDPRHIQLLGDVMTFKGEVLGIT 1371
Query: 950 RNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
R G+ ++ S +Q +FE + + A+ ++D++ S ++LGQ GTG F++
Sbjct: 1372 RFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVSECIILGQTMSIGTGSFKV 1429
>gi|209875909|ref|XP_002139397.1| DNA-directed RNA polymerase I largest subunit [Cryptosporidium muris
RN66]
gi|209555003|gb|EEA05048.1| DNA-directed RNA polymerase I largest subunit, putative
[Cryptosporidium muris RN66]
Length = 1981
Score = 258 bits (660), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 165/445 (37%), Positives = 231/445 (51%), Gaps = 56/445 (12%)
Query: 264 IDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIE 323
ID K + +++ + ++ PFP N MV +GAKGS VN I +LGQ E
Sbjct: 1088 IDTFCKMGIGNISSQVGEIVNGSSTFLPFPKNGFSSMVITGAKGSRVNHQMICAMLGQQE 1147
Query: 324 LEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAV 383
LEG+R +M+S ++LP+F PY+ RAGGF+ R++ G+ QEFFFHCM+GREGL+DTAV
Sbjct: 1148 LEGRRVPIMISMKSLPAFAPYDFGSRAGGFITDRYLDGLHAQEFFFHCMSGREGLVDTAV 1207
Query: 384 KTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFL 443
KT+RSGYLQRC++K LE + V YD TVR D S+IQ +YGEDG+DV+K Y+ + L
Sbjct: 1208 KTARSGYLQRCILKGLESMIVQYDGTVRSDDGSMIQFIYGEDGIDVSKCSYIA--RVDDL 1265
Query: 444 EDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQL 503
NI+ + + + L+ +L + F +R+K
Sbjct: 1266 ARNIELLSRSLNACEAKRNDVVRLSFSKVLEIEHK-YGQFATVMNRSK-----------K 1313
Query: 504 DDKARKKYRKKFK-------ACPQPLISTFQPDAHFGSISE----NLADS---------- 542
+ KAR R+ F P+ S P + GS+SE NL ++
Sbjct: 1314 EKKARSNSRRYFSWEIVKLDESDTPITSVLPPAEYCGSVSELFVSNLTENNLQRLSHLCN 1373
Query: 543 ----------VVKYTKGRTDASHVDKFYDMIFYKNLLSL------ANPGENVGVLAAQSI 586
+KY R + ++ + LL L PGE VG LAAQSI
Sbjct: 1374 NHQSINTKVERLKYENKRRNGDSSHNLEELKNIEYLLRLKYSQTQVAPGEAVGCLAAQSI 1433
Query: 587 GEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPF--LPDMPKLE- 643
GEP+TQMTLNTFH AG G NVTLGIPRLRE+L ++ KTP IP M +L+
Sbjct: 1434 GEPATQMTLNTFHLAGHGAANVTLGIPRLRELLQTGGES-KTPYSFIPLNVKGSMNQLQA 1492
Query: 644 -KKANRLAKSMTRITMADVLEKVKI 667
A+++ I + D++ + I
Sbjct: 1493 ANAADQVLACFKSIPLTDIIAAIGI 1517
Score = 97.1 bits (240), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 84/145 (57%), Gaps = 5/145 (3%)
Query: 873 GINVNFISQYRHLLDL-NKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRH 931
G N+ +I L L N + NDI + YGIEAA + +I E+ NVFAVYGI VD RH
Sbjct: 1816 GTNIGYIYNISPDLVLHNNIRSNDIQTVYKYYGIEAARKCLINELTNVFAVYGINVDYRH 1875
Query: 932 LSLVADYMTHSGTYVAMNRNG-IRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSAR 990
LSL+ D +T SG+ +R G + + S +M+FE ++ + A +G DSL++P++
Sbjct: 1876 LSLIGDTVTFSGSIRVFSRVGNVAHSTSPFLQMSFETSIKFLADACSRGAIDSLKSPASS 1935
Query: 991 VMLGQECRQGTGL---FQLRNREKK 1012
+ +G+ C GTGL F + N K
Sbjct: 1936 ISVGKICSVGTGLSRIFTIVNHSNK 1960
Score = 96.3 bits (238), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 84/284 (29%), Positives = 128/284 (45%), Gaps = 30/284 (10%)
Query: 10 HFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISG------------AKLSLRDTFLT 57
H L SF+++V S L P+ HVI G +++ +T L
Sbjct: 668 HLLYTSLSFILDVKSSAL---SSLPIMYSANGHVIFGKNNTSSQLNTASGTVTIDETILR 724
Query: 58 RAEYMNLVYQALCILNTEIRTL-PPTIWKPMPLWTGKQVLSTVI---INLTPKDKVIIRH 113
+ N + N + L PP I+KP+PLWTGKQV+++++ IN T I
Sbjct: 725 FQSHKNNRREFTSSTNLDGVILEPPAIFKPIPLWTGKQVVTSMLKTFINKTSSSDRKIYA 784
Query: 114 GELLSGILDKKQFGSTQYGLVHA-VWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWD 172
G ++ I + G + G+ ++ V IR+ ELL G++DK QFG+ Y LVH D
Sbjct: 785 G--INLISKSRTPGDSWNGINDGDSEESTVIIRNSELLQGVIDKNQFGTNTYCLVHLCTD 842
Query: 173 THGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGT---E 229
G LLS L +LQ GFT + D+L+ E +++R IINK E
Sbjct: 843 LFGPVIGGRLLSSFFYLSQAFLQIRGFTCSIGDMLLTLEAEKRRKDIINKCTNASVFLQE 902
Query: 230 AACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLD 273
A N + ++ D EI S + S+P + + K + D
Sbjct: 903 AFSNLVLQRINNDYEISSMEY-----SLPSIECKFTDKLKDICD 941
Score = 67.0 bits (162), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 41/60 (68%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
++EA ++M+ S QY VPK G PL GLIQD I GA L+ + TFL R EY +L+Y +L +
Sbjct: 618 RSEAKYIMDASQQYSVPKSGEPLRGLIQDSCIGGAFLTSKSTFLNREEYYHLLYTSLSFI 677
>gi|388580014|gb|EIM20332.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Wallemia sebi CBS 633.66]
Length = 1409
Score = 258 bits (659), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 198/666 (29%), Positives = 301/666 (45%), Gaps = 126/666 (18%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+ EA LM V + P++G P+ IQD + + LS +D L R E+ +V L
Sbjct: 511 RTEAQELMGVKHNMVTPRNGEPIIAAIQDFITAAYLLSKKDYLLDRQEFSQVV-SYLDHA 569
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLST---------VIINLTPKDKVIIRHGELLSGILDK 123
N I PP I KP +WTGKQ+LS V++NL K++ + G+L
Sbjct: 570 NMHIDLPPPAILKPKRMWTGKQILSILMRPNKSSPVLVNLEAKNRT---NHPPPKGMLPD 626
Query: 124 KQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAV-WDTHGAEHAISL 182
D ++ IR+ +++ G DK G + V V +G + A++
Sbjct: 627 MSSN-----------DGYLVIRNSQIMCGHFDKATVGDGKKNSVFGVILRDYGPDEAVNA 675
Query: 183 LSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTD 242
++ LA++ +L VGF+LG+ D++ + +++ ++ +A + A L+
Sbjct: 676 MNRLARVCARWLASVGFSLGISDVMPSMDLRKRKEVLVEEAYAHCNDLIEKAKYGKLENQ 735
Query: 243 PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
P Q E+ S +L KV + + C+ E + + N M
Sbjct: 736 PGCDQEQTLESLIS-------------GILSKVRDVVGASCMEE--LSRY--NAPLIMAT 778
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
G+KGS +N Q+ +GQ + GKR R+LP F P + GFV F +G+
Sbjct: 779 CGSKGSVINVSQMVACVGQQIISGKRVPNGFQDRSLPHFPKKAKDPPSKGFVRNSFFSGL 838
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
P EF FH ++GREGL+DTAVKT+ +GY+QR L+K LE L+ HYD +VR S ++Q LY
Sbjct: 839 SPPEFLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLSAHYDRSVRTSSGIVVQFLY 898
Query: 423 GEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKP- 481
G DGLD P+SL + G+P
Sbjct: 899 GSDGLD-----------------------------------PVSL--------EGDGQPV 915
Query: 482 NFIFSPHRTKFTMDLLEQW-----YQLDDKARKKYRKK--FKACPQPLISTFQPDAHFGS 534
F+ S TK +D + +++ + K+ R K K C +ST + + F S
Sbjct: 916 EFLRSWKHTKAILDSSKHERGMLPFEITEHVDKELRTKRWMKECTPHYLSTIR-NFIFSS 974
Query: 535 ISENLAD-------------------------------SVVKYTKGRTDASHVDKFYDMI 563
I++ LAD + K + + +F ++
Sbjct: 975 ITKKLADLRDAHGMFDALTKSDEWDEETDLNMGAADFEKAIVDNKAKVTLPQLQEFLNIC 1034
Query: 564 FYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMAT 623
+ K + S PG VG + AQSIGEP TQMTL TFHFAG MNVTLG+PR++EI+ A
Sbjct: 1035 WQKYVKSKVEPGTTVGPIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII-NAA 1093
Query: 624 KAIKTP 629
KAI TP
Sbjct: 1094 KAISTP 1099
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N + + + GIEAA II E+ NV + +G+ +D RH+ L++D MT G + + R G+
Sbjct: 1264 NHVMEVQNVLGIEAARSSIINEIDNVMSSHGMGIDNRHIQLLSDSMTFKGEVLGITRFGV 1323
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLG 994
++ S + +FE + + A+ + D++ S +++G
Sbjct: 1324 AKMKDSVLMLASFEKTTDHLFNAAFHAKRDAIEGVSESIIMG 1365
>gi|255717220|ref|XP_002554891.1| KLTH0F16236p [Lachancea thermotolerans]
gi|238936274|emb|CAR24454.1| KLTH0F16236p [Lachancea thermotolerans CBS 6340]
Length = 1460
Score = 258 bits (658), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 206/670 (30%), Positives = 309/670 (46%), Gaps = 111/670 (16%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + L PK G P+ QD + +S +D+F +RAE++ L+ +
Sbjct: 527 RAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFSRAEFVQLL-SMMSDG 585
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLS---------TVIINLTPKDKVIIRHGELLSGILDK 123
N + PP+I KP +WTGKQV S V+INL K+KV I +
Sbjct: 586 NLQFDIPPPSIMKPYYMWTGKQVFSLLIRPNKESPVVINLDAKNKVYIPPKD-------- 637
Query: 124 KQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFG-STQYGLVHAVWDTHGAEHAISL 182
K + ++ D +V IR ++LSG++DK G ++ + + + G + A
Sbjct: 638 KSLPNEM-----SINDGYVVIRGSKILSGVMDKSVLGDGKKHSVFYTILRDFGPQEAAFA 692
Query: 183 LSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNAL-----GL 237
++ +AKL +L GF++G+ D+ E K+ ++ A A C+AL
Sbjct: 693 MNRMAKLCARFLGNRGFSIGINDVTPGFELKNKKEIMVEDAY-----AKCDALIDLFNKG 747
Query: 238 PLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNL 297
L+T P Q EA + LL KV + +VC+ E ++ N+
Sbjct: 748 KLETQPGCNEEQTLEA-------------KIGGLLSKVREEVGEVCIKE--LDNL--NSC 790
Query: 298 QFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGR 357
M G+KGST+N Q+ ++GQ + G R R+LP FL +P++ GFV
Sbjct: 791 LIMANCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFLKNSKTPQSKGFVRNS 850
Query: 358 FMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSL 417
F +G+ P EF FH ++GREGL+DTAVKT+ +GY+ R L+K LE L+ YD T+R S +
Sbjct: 851 FFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTIRTSSNGI 910
Query: 418 IQVLY---GEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLT 474
+Q Y G D +D+ + S W + V N + K LL
Sbjct: 911 VQFTYGGDGLDPIDMEGNAQPVNFSRS-------WEHANNVTFNHVDKP--------LLP 955
Query: 475 FKSSGKPNFIFSPHRTKFT-------------MDLLEQWYQLDDKARKKYR--------- 512
++ + N + P K D +E + DD R Y+
Sbjct: 956 YQIMQQTNGVLKPLEEKLVRYDNLGNELDPSLQDRVE-YIDQDDAERNFYKSLRDYMYEK 1014
Query: 513 -------------KKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKF 559
K+F P + D G+ + LA SV + K + V KF
Sbjct: 1015 ASHLANIRAHKGLKEFLDEPAAELQAMDLDE--GAPASALA-SVDQLCK--ISSKLVLKF 1069
Query: 560 YDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREIL 619
++ +K + PG VG + A SIGEP TQMTL TFHFAG MNVTLG+PR++EI+
Sbjct: 1070 LEIAIFKYHKAKVEPGTAVGAVGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII 1129
Query: 620 MMATKAIKTP 629
A+K I TP
Sbjct: 1130 -NASKVISTP 1138
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 76/142 (53%), Gaps = 13/142 (9%)
Query: 866 KHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 925
+ ++ TDG+ + ++ H+L++ S GIEAA I+ E+ + +G+
Sbjct: 1300 REVMTTDGV-IGMKTKTNHILEV-----------FSVLGIEAARTSIVGEIDYTMSNHGM 1347
Query: 926 EVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSL 984
VDPRH+ L+ D MT+ G + + R G+ ++ S +Q +FE + + A+ ++D++
Sbjct: 1348 SVDPRHVQLLGDVMTYKGEILGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAV 1407
Query: 985 RAPSARVMLGQECRQGTGLFQL 1006
S ++LGQ GTG F++
Sbjct: 1408 EGVSECIILGQTMSIGTGAFKV 1429
>gi|154417868|ref|XP_001581953.1| RNA polymerase Rpb1, domain 2 family protein [Trichomonas vaginalis
G3]
gi|121916185|gb|EAY20967.1| RNA polymerase Rpb1, domain 2 family protein [Trichomonas vaginalis
G3]
Length = 1657
Score = 258 bits (658), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 204/673 (30%), Positives = 314/673 (46%), Gaps = 93/673 (13%)
Query: 14 AEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCILN 73
A+A +LMNV P+ G + QD + L+ ++ FL + + L+ Q L
Sbjct: 492 ADARYLMNVLYNLFSPRAGEMIVAPTQDFLSGAFILTRKNVFLDYSHFTFLISQIFDNLE 551
Query: 74 TEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYGL 133
E+ PP I KP LWTGKQV+S +I P K + Q G+ +Y
Sbjct: 552 -EVDIPPPAIVKPYQLWTGKQVVSLMI---APNKKTDLHFTH---------QVGNKEYTG 598
Query: 134 VHAVW--DTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFT 191
+ D +V+ ++SG+L+K G L + H + A + +AK+
Sbjct: 599 NKEMCKKDGYVSFLDNYMVSGVLEKSLIGGGPKSLWAIMARDHSPKFAAVCMQRIAKMSC 658
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQ 251
YL GF++G+ D+ + + I+K T C D E S +L+
Sbjct: 659 RYLMNRGFSIGIMDVRPDENLTNNKNAQISK-----TYQDC------YDKIAEYDSGKLE 707
Query: 252 EA--YASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
A + A ++ Q L ++ N I ++C+ E P N M +SGAKGS
Sbjct: 708 AAPGMTKLATLEAFLNGQ----LSELRNKIGKMCM----AELSPINTPLVMAKSGAKGSD 759
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ LGQ + GKR R++P F P + GF+ F TG+ P +FFF
Sbjct: 760 INICQMMACLGQQSVGGKRIIDDFIDRSIPHFKHGSKDPISKGFIASSFYTGLTPSDFFF 819
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H M GREGL+D AVKT+++GY+QR L+K LE L + YD TVR SD +++Q YG+DGLD
Sbjct: 820 HTMGGREGLVDAAVKTAQTGYMQRRLMKSLEDLVIAYDQTVRMSDGTIVQFTYGDDGLDP 879
Query: 430 --------------TKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTF 475
++YL L D I+ + + N +++ L+ +
Sbjct: 880 LNLETTYFPVDLNRVSQEYLFKFSQEPLMDQIEARERIETLFNDIREEQQGRGLVRV--- 936
Query: 476 KSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSI 535
P F+ K+ DLLE++ + +D+ I
Sbjct: 937 -----PEFLID-RLKKYIDDLLEKYIKANDQY---------------------------I 963
Query: 536 SENLA-DSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMT 594
E+L+ DS ++ T T S +++F ++ S+A PG VG +A QSIGEP+TQMT
Sbjct: 964 GEDLSMDSYIRATIPFT-KSFLEEFVKFCMHRCEKSMAEPGMTVGAVAGQSIGEPATQMT 1022
Query: 595 LNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMT 654
L +FHFAG MNVTLG+PR+ E+ M A IKTP + L ++ A R+ K +
Sbjct: 1023 LRSFHFAGVASMNVTLGVPRIEEV-MNAVSEIKTPIITANLLSQRDEI---AARIVKGII 1078
Query: 655 -RITMADVLEKVK 666
R+T+ V + ++
Sbjct: 1079 DRVTLGQVCKHIE 1091
Score = 63.2 bits (152), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 78/158 (49%), Gaps = 18/158 (11%)
Query: 850 CKLLFLPSNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAAN 909
C LF+ N F + +L T GI+ + H+LD+ K+ G+EAA
Sbjct: 1192 CFKLFVEGNPFLK-----VLNTPGIDPKR-TVSNHVLDVEKVL-----------GVEAAR 1234
Query: 910 RVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMP 968
VII E+ NV Y + +D RHL L++D MT G + + R+G+ + + S ++ +FE
Sbjct: 1235 SVIISEITNVMKNYSLNIDRRHLMLLSDLMTIRGKVLGVTRHGLAKTSVSSLKLASFETT 1294
Query: 969 LEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
E + A+ ++ SA V+LG G+G+ +
Sbjct: 1295 QEHLFNAAFHNVDEVANGVSASVILGNFAPIGSGMIDV 1332
>gi|448112703|ref|XP_004202165.1| Piso0_001648 [Millerozyma farinosa CBS 7064]
gi|359465154|emb|CCE88859.1| Piso0_001648 [Millerozyma farinosa CBS 7064]
Length = 1454
Score = 257 bits (657), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 202/678 (29%), Positives = 323/678 (47%), Gaps = 77/678 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + L PK G P+ QD + +S +D+F RA + ++ +
Sbjct: 524 RAEAMNLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFYDRAALVQML-SMMSDA 582
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLS---------TVIINLTPKDKVIIRHGELLSGILDK 123
N + PP I+KP+ LWTGKQ+ S V+INL K+K I L G ++
Sbjct: 583 NVQYDIPPPAIFKPVMLWTGKQIFSLLIRPNKNSKVLINLDAKNKTFIPP---LKGFPNE 639
Query: 124 KQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFG-STQYGLVHAVWDTHGAEHAISL 182
+ D V IR ++LSG++DK G ++ + + + +G + A +
Sbjct: 640 -----------MSQNDGFVVIRGSQILSGVMDKSLLGDGKKHSVFYTILRDYGPDEAANA 688
Query: 183 LSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTD 242
++ +AKL ++ GF++G+ D++ E +K+ ++ +A E L+T
Sbjct: 689 MNRMAKLCARFMGNRGFSIGINDVIPGSELKQKKELMVEQAYLKCDELIDLYNRGKLETQ 748
Query: 243 PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
P Q EA + LL KV + ++C+ E AN M
Sbjct: 749 PGCNEEQTLEA-------------KIGGLLSKVREQVGEICIKE----LDSANAPLIMAT 791
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
G+KGST+N Q+ ++GQ + G R R+LP F +P++ GFV F +G+
Sbjct: 792 CGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFTKNSKTPQSKGFVRNSFFSGL 851
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
P EF FH ++GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR+S ++Q Y
Sbjct: 852 SPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDNTVRNSSNGIVQFTY 911
Query: 423 GE---DGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNL----LKKHPLSLALLLLLT- 474
G D LD+ K +F N +W ++ V ++ LK + + A+ +L
Sbjct: 912 GGDGLDPLDMEGDA----KPVNF---NRQWDHAFNVTFDVKDRGLKPYEILNAVEYVLNP 964
Query: 475 -------FKSSGKPNFIFSPHRTKFT--MDLLEQWYQ-----LDDKARKKYRKKFKACPQ 520
+ +SGK + + ++ D +Y + +KA + + + + +
Sbjct: 965 LEKKLVRYSNSGKILSLEDSDKIEYADEKDAERNFYNSIREFITEKAVQLAQIRERRNLK 1024
Query: 521 PLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGV 580
P + + D E ++V + K A + F D YK + PG VG
Sbjct: 1025 PSLRPPKDDEMDVVDDEACLNAVNQLLKISEKA--IRSFLDQCIYKYFRAKVEPGTAVGA 1082
Query: 581 LAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMP 640
+ A SIGEP TQMTL TFHFAG MNVTLG+PR++EI+ A+K I TP + + D
Sbjct: 1083 IGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII-NASKVISTPIINSVLVNDD- 1140
Query: 641 KLEKKANRLAKSMTRITM 658
+++A R+ K T+
Sbjct: 1141 --DERAARVVKGRIEKTL 1156
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 76/142 (53%), Gaps = 13/142 (9%)
Query: 866 KHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 925
K+++ TDG+ V + H+L++ ++ GIEAA II+E+ +G+
Sbjct: 1297 KNVMSTDGV-VGTKTTTNHVLEIFEVL-----------GIEAARASIIKEIDYTMTNHGM 1344
Query: 926 EVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSL 984
VDPRH+ L+ D MT+ G + + R G+ ++ S +Q +FE + + AS +ED +
Sbjct: 1345 SVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDASFYMKEDKI 1404
Query: 985 RAPSARVMLGQECRQGTGLFQL 1006
S ++LGQ GTG F+L
Sbjct: 1405 EGVSECIILGQTMNIGTGAFKL 1426
>gi|336373147|gb|EGO01485.1| hypothetical protein SERLA73DRAFT_103293 [Serpula lacrymans var.
lacrymans S7.3]
Length = 1400
Score = 257 bits (657), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 191/632 (30%), Positives = 302/632 (47%), Gaps = 54/632 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+ EA LM+V + P++G P+ IQD + + +S +DTF R + Q C
Sbjct: 506 RTEALELMSVKHNLVTPRNGEPVIAAIQDFITASYLISRKDTFFDRRSFT----QICCYF 561
Query: 73 ---NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGST 129
+ +I PP IWKP+ LWTGKQ+ + V++ KV + + +K Q
Sbjct: 562 ADADMQIDIPPPAIWKPVRLWTGKQIFN-VLMRPNKDSKVFVN----VESKCNKPQEPKA 616
Query: 130 QY------GLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISL 182
++ + D + I + E++ G++DK GS + + + +G A +
Sbjct: 617 EFYPRMKPAPDLSPNDGWLVIVNSEIMCGVMDKATVGSGKKKSIFGVIMRDYGPHEAAAA 676
Query: 183 LSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTD 242
++ LAKL +L GF+LG+ D++ K+ +++ KA + A L+
Sbjct: 677 MNRLAKLCARWLANFGFSLGINDVIPGPILAAKKDELVEKAYADCLDLIAQAKKGKLENK 736
Query: 243 PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
P Q EA S S+L KV + + ++C+ E P M
Sbjct: 737 PGCNQEQTLEALIS-------------SVLSKVRDAVGEICMKELSRHNAPL----IMAT 779
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
G+KGS +N Q+ +GQ + G R R+LP F P + GFV F +G+
Sbjct: 780 CGSKGSVINVSQMVACVGQQIIAGHRVPDGFQDRSLPHFPKKSKEPPSKGFVRNSFYSGL 839
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
+ EF FH ++GREGL+DTAVKT+ +GY+QR L+K LE LT YD++VR+S ++Q Y
Sbjct: 840 RATEFLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLTTQYDLSVRNSTGGVVQFTY 899
Query: 423 GEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPN 482
G+DGLD + D Q I++ ++ L++ + SL +L
Sbjct: 900 GDDGLDPACLE--GDAQ------PIEFERAWSHALSIGNRRGRSLLPYEVLEIVDQELST 951
Query: 483 FIFSPHRTKFTMDLLEQWYQLDDKAR-----KKYRKKFKACPQPLISTFQPDAHFGSISE 537
F+ T + + + Y D+ A ++ R F A + + + D S+
Sbjct: 952 KRFTTECTAAYLATI-RGYITDNVAHTLATMRQSRGMFDALERA--AEWDADTDL-SLGA 1007
Query: 538 NLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNT 597
+ AD + K + + F ++ + K + + PG VG + AQSIGEP TQMTL T
Sbjct: 1008 SDADKAIVDNKSKVTEDQLRCFLELCWVKYVKARIEPGSTVGAVGAQSIGEPGTQMTLKT 1067
Query: 598 FHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
FHFAG MNVTLG+PR++EI+ A KAI TP
Sbjct: 1068 FHFAGVASMNVTLGVPRIKEII-NAAKAISTP 1098
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N + +A GIEAA R II E++ +G+ +DPRH+ L+ D M++ G + + R G+
Sbjct: 1267 NHVIEVAQVLGIEAARRTIINEIQYTMQSHGMSIDPRHVMLLGDVMSYKGEVLGITRFGV 1326
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLG 994
++ S + +FE + + A+ G+ DS+ S +++G
Sbjct: 1327 AKMKDSVLMLASFEKTTDHLFDAAAFGKNDSIAGVSESIIMG 1368
>gi|336386001|gb|EGO27147.1| hypothetical protein SERLADRAFT_446372 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1403
Score = 257 bits (657), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 191/632 (30%), Positives = 302/632 (47%), Gaps = 54/632 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+ EA LM+V + P++G P+ IQD + + +S +DTF R + Q C
Sbjct: 509 RTEALELMSVKHNLVTPRNGEPVIAAIQDFITASYLISRKDTFFDRRSFT----QICCYF 564
Query: 73 ---NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGST 129
+ +I PP IWKP+ LWTGKQ+ + V++ KV + + +K Q
Sbjct: 565 ADADMQIDIPPPAIWKPVRLWTGKQIFN-VLMRPNKDSKVFVN----VESKCNKPQEPKA 619
Query: 130 QY------GLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISL 182
++ + D + I + E++ G++DK GS + + + +G A +
Sbjct: 620 EFYPRMKPAPDLSPNDGWLVIVNSEIMCGVMDKATVGSGKKKSIFGVIMRDYGPHEAAAA 679
Query: 183 LSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTD 242
++ LAKL +L GF+LG+ D++ K+ +++ KA + A L+
Sbjct: 680 MNRLAKLCARWLANFGFSLGINDVIPGPILAAKKDELVEKAYADCLDLIAQAKKGKLENK 739
Query: 243 PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
P Q EA S S+L KV + + ++C+ E P M
Sbjct: 740 PGCNQEQTLEALIS-------------SVLSKVRDAVGEICMKELSRHNAPL----IMAT 782
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
G+KGS +N Q+ +GQ + G R R+LP F P + GFV F +G+
Sbjct: 783 CGSKGSVINVSQMVACVGQQIIAGHRVPDGFQDRSLPHFPKKSKEPPSKGFVRNSFYSGL 842
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
+ EF FH ++GREGL+DTAVKT+ +GY+QR L+K LE LT YD++VR+S ++Q Y
Sbjct: 843 RATEFLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLTTQYDLSVRNSTGGVVQFTY 902
Query: 423 GEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPN 482
G+DGLD + D Q I++ ++ L++ + SL +L
Sbjct: 903 GDDGLDPACLE--GDAQ------PIEFERAWSHALSIGNRRGRSLLPYEVLEIVDQELST 954
Query: 483 FIFSPHRTKFTMDLLEQWYQLDDKAR-----KKYRKKFKACPQPLISTFQPDAHFGSISE 537
F+ T + + + Y D+ A ++ R F A + + + D S+
Sbjct: 955 KRFTTECTAAYLATI-RGYITDNVAHTLATMRQSRGMFDALERA--AEWDADTDL-SLGA 1010
Query: 538 NLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNT 597
+ AD + K + + F ++ + K + + PG VG + AQSIGEP TQMTL T
Sbjct: 1011 SDADKAIVDNKSKVTEDQLRCFLELCWVKYVKARIEPGSTVGAVGAQSIGEPGTQMTLKT 1070
Query: 598 FHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
FHFAG MNVTLG+PR++EI+ A KAI TP
Sbjct: 1071 FHFAGVASMNVTLGVPRIKEII-NAAKAISTP 1101
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N + +A GIEAA R II E++ +G+ +DPRH+ L+ D M++ G + + R G+
Sbjct: 1270 NHVIEVAQVLGIEAARRTIINEIQYTMQSHGMSIDPRHVMLLGDVMSYKGEVLGITRFGV 1329
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLG 994
++ S + +FE + + A+ G+ DS+ S +++G
Sbjct: 1330 AKMKDSVLMLASFEKTTDHLFDAAAFGKNDSIAGVSESIIMG 1371
>gi|328710964|ref|XP_001945328.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
[Acyrthosiphon pisum]
Length = 1366
Score = 257 bits (656), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 193/623 (30%), Positives = 301/623 (48%), Gaps = 70/623 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA+ LM S + P++G L QD + L+ ++TFL + + L+ +
Sbjct: 520 RAEAALLMINKSNLVTPRNGDILIAATQDFITGAYLLTHKNTFLNQRDSSRLIGWLMSGD 579
Query: 73 NTEIR-TLP-PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ I TLP P I KP LWTGKQ+LS + + P K +++ G K + +
Sbjct: 580 DINIDLTLPRPAILKPHKLWTGKQILSII---MRPSKKCLVKANLRCKG----KSYTRDE 632
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
D++V I++ ELL+G +DK GS ++ + + + G++ ++ L +L
Sbjct: 633 E---FCFKDSYVYIKNSELLAGTMDKATLGSGSKSNIFYVLLADWGSDVCCKVMWRLTRL 689
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
+ +L GF++G+ D+ + + + +++ L E + L E+ +
Sbjct: 690 TSYFLMLRGFSIGIGDVTPSDDLLQSKNELVINGNALCEE------NIRLRNSKEL---K 740
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
Q A I +Q + D V + CL +E N M SG+KGS
Sbjct: 741 CQPGCNMDETLEANILKQLSGIRDSV----GKACL----LELHFTNGPLVMALSGSKGSN 792
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ +GQ L G R R+LP F + +P A GFV+ F +G+ P EFFF
Sbjct: 793 INISQMIACVGQQALSGHRVPDGFESRSLPHFKRFSKTPEAKGFVENSFYSGLTPTEFFF 852
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H M GREGL+DTAVKT+ +GY+QR LVK LE L VHYD TVR++ +IQ +G D LD
Sbjct: 853 HTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVHYDNTVRNAFGDVIQFEFGGDSLDP 912
Query: 430 TKRQ---YLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFS 486
T + D + + + C+ + L+ + ++ +LL F++ N IF+
Sbjct: 913 TYTEGDGVPVDFKRVYFNVTANYPCTDECTLDSEEILKITEDVLLSENFQNV---NTIFT 969
Query: 487 PHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKY 546
F +L +L RKK+ NL S ++
Sbjct: 970 EELRNFGKNLANNMAEL----RKKWL-------------------------NLEVSKIQ- 999
Query: 547 TKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDM 606
R ++ + KFY K + ++ PG VG +AAQSIGEP TQMTL TFHFAG M
Sbjct: 1000 ---RITSTQLIKFYVTCLTKYMAAVIEPGTPVGAIAAQSIGEPGTQMTLKTFHFAGVASM 1056
Query: 607 NVTLGIPRLREILMMATKAIKTP 629
N+T G+PR++EI+ ++K I TP
Sbjct: 1057 NITQGVPRIKEII-NSSKNISTP 1078
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 1/121 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N+ + + GIEA+ II E+ +V +GI +DPRH L+AD MT G + + R G+
Sbjct: 1245 NNTFQVWNALGIEASRATIISEIDSVMGNHGISIDPRHPMLIADLMTSRGELLGITRFGL 1304
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNREKK 1012
++ S + +FE + + A+ G+ D++ S +++G GTG F+L + K
Sbjct: 1305 SKMKESVLNLASFEKTSDHLFDAAYYGQTDTINGVSESIIMGIPINLGTGFFKLIYKSKT 1364
Query: 1013 K 1013
K
Sbjct: 1365 K 1365
>gi|449540821|gb|EMD31809.1| hypothetical protein CERSUDRAFT_144684 [Ceriporiopsis subvermispora
B]
Length = 1403
Score = 257 bits (656), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 188/645 (29%), Positives = 293/645 (45%), Gaps = 80/645 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+ EA LM+V + P++G P+ IQD + + LS RD F R ++ + L
Sbjct: 509 RTEALELMSVKHNLVTPRNGEPVIAAIQDFITASFLLSQRDRFFDRRQFTQIC-SYLADA 567
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ +I PPTIWKP LWTGKQ+ + V++ KV++ + S +++ Y
Sbjct: 568 DLKIDIPPPTIWKPQRLWTGKQIFN-VLMRPNRSSKVLV---NVESKCAKEEKPNVACYP 623
Query: 133 LVH-----AVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCL 186
+ A D + I + E++ G++DK GS + + + +G A + ++ +
Sbjct: 624 MKKPAPDLAPNDGWLVIVNSEIMCGVMDKATVGSGKKKSIFGVIMRDYGPHEAAAAMNRV 683
Query: 187 AKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEII 246
AK+ +L GF+LG+ D++ + +++ ++ KA + A L+ P
Sbjct: 684 AKVCARWLANFGFSLGINDVIPGPQLSQQKEDMVMKAYNACDDLIMKAKKGLLENKPGCD 743
Query: 247 SSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAK 306
Q EA S S+L V + + +C+ E P M G+K
Sbjct: 744 QEQTLEAMIS-------------SILSNVRDQVGNICMKELSRHNAPL----VMATCGSK 786
Query: 307 GSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQE 366
GS +N Q+ +GQ + G R R+LP F P + GFV F TG+ P E
Sbjct: 787 GSVINVCQMVACVGQQIIAGHRVPDGFQDRSLPHFPKKSREPPSKGFVRNSFYTGLSPTE 846
Query: 367 FFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDG 426
F FH ++GREGL+DTAVKT+ +GY+QR L+K LE L HYD +VR++ ++Q YG+DG
Sbjct: 847 FLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLVTHYDSSVRNAVGGVVQFRYGDDG 906
Query: 427 LD----------------------VTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHP 464
LD + R F LE + + + + + +
Sbjct: 907 LDPACLEGDAQPVEFLRAWSHASSIASRSTRGLLPFEILEFVDRELANRRFTSECMPAY- 965
Query: 465 LSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLIS 524
L ++ +F S N + R D LE+ + D++
Sbjct: 966 ----LAIVRSFISDHIANKLAEVRRQHGMYDALEREAEWDEET----------------- 1004
Query: 525 TFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQ 584
D G+ AD K + + F D+ + K + + PG VG + AQ
Sbjct: 1005 ----DLSLGASD---ADKATVDNKAKVTEEQLRVFLDICWTKYVKAKIEPGSTVGAVGAQ 1057
Query: 585 SIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
SIGEP TQMTL TFHFAG MNVTLG+PR++EI+ A K I TP
Sbjct: 1058 SIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII-NAAKVISTP 1101
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N I + GIEAA + II E++ +G+ +DPRH+ L+ D MT+ G + + R G+
Sbjct: 1270 NHIVEVCQVLGIEAARQTIINEIQYTMQSHGMSIDPRHVMLLGDVMTYKGEVLGITRFGV 1329
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLG 994
++ S + +FE + + A+ G+ DS+ S +++G
Sbjct: 1330 AKMKDSVLMLASFEKTTDHLFDAAALGKTDSIAGVSESIIMG 1371
>gi|380025198|ref|XP_003696364.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit RPC1-like, partial [Apis florea]
Length = 1994
Score = 257 bits (656), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 206/663 (31%), Positives = 315/663 (47%), Gaps = 76/663 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM S + P++G L QD + G L+ +D FL + + L A C+L
Sbjct: 1144 RAEALVLMGNKSNLVTPRNGELLIAATQDFITGGYLLTQKDMFLNKTQASQL---AGCLL 1200
Query: 73 -----NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
I P I KP LWTGKQ S + L P + I+ + + K +
Sbjct: 1201 AGPDITMSINLPEPAILKPTTLWTGKQXFSLI---LKPNNTCNIK-----ANLKTKGRAY 1252
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCL 186
+T L + D++V IR+ ELL+G +DK GS ++ + + + G + A + L
Sbjct: 1253 TTNEEL--CINDSYVIIRNSELLAGSMDKSTLGSGSKQNIFYILLRDWGEDIATIAMWRL 1310
Query: 187 AKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEII 246
A++ + +L GF++G+ D+ Q + + +++N TE + L P
Sbjct: 1311 ARMASFFLMNRGFSIGIGDVTPGQGLLKAKQELLNAGYSKCTEYIQDMEEGRLICQPGCT 1370
Query: 247 SSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAK 306
+ EA I ++ L + ++ + CL E P+N+ M SG+K
Sbjct: 1371 EEETLEA---------MILKE----LSVIRDHAGKACLKE----LHPSNSPLIMALSGSK 1413
Query: 307 GSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQE 366
GS +N Q+ +GQ + G R R LP F + P A GFV+ F +G+ P E
Sbjct: 1414 GSFINISQMIACVGQQAISGHRVPNGFEDRALPHFERHSKIPAAKGFVENSFYSGLTPTE 1473
Query: 367 FFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDG 426
FFFH M GREGL+DTAVKT+ +GY+QR LVK LE L +HYDMTVR+S ++Q+LYG D
Sbjct: 1474 FFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCLHYDMTVRNSVGDIVQILYGGDA 1533
Query: 427 LDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFS 486
LD T Y+ K YK IL+ ++ KS K
Sbjct: 1534 LDPT---YMEGKDCPV---------DYKRILDHVRA-------------KSPCKNEESLD 1568
Query: 487 PHRT-KFTMDLL--EQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSV 543
H K T +LL E++ L ++ +++ K + I+ + +A + +
Sbjct: 1569 GHSVIKATNELLNSEEYECLSEEFKQELSTFLKTVARK-IARLRHNA--------ILNVP 1619
Query: 544 VKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGR 603
V R S + +F K + + PG VG LAAQSIGEP TQMTL TFHFAG
Sbjct: 1620 VILQLERLTVSQLVEFIHTCKEKYMRAKIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGV 1679
Query: 604 GDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLE 663
MN+T G+PR++EI+ A+ I TP + + D + A R+ + + + +V E
Sbjct: 1680 ASMNITQGVPRIKEII-NASPKISTPIITAALINDADP--EYARRVKGRIEKTILGEVTE 1736
Query: 664 KVK 666
++
Sbjct: 1737 YIE 1739
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
Query: 902 TYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFI 960
T GIEAA I+ E+K V +G+ +D RH LVAD MT G + + R G+ ++ S +
Sbjct: 1877 TLGIEAARATIMTEIKLVMENHGMSIDRRHPMLVADLMTSRGEVLGITRQGLAKMKESVL 1936
Query: 961 QKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNR 1009
+FE + + A+ G++D + S +++G GTG+F+L ++
Sbjct: 1937 NLASFEKTSDHLFDAAYYGQKDVICGVSESIIMGIPVPVGTGIFKLLHK 1985
>gi|19112298|ref|NP_595506.1| DNA-directed RNA polymerase III complex large subunit Rpc1
(predicted) [Schizosaccharomyces pombe 972h-]
gi|9297042|sp|O94666.1|RPC1_SCHPO RecName: Full=DNA-directed RNA polymerase III subunit rpc1; Short=RNA
polymerase III subunit C1; AltName: Full=DNA-directed RNA
polymerase III largest subunit; AltName: Full=RPC158
gi|4467280|emb|CAB37604.1| DNA-directed RNA polymerase III complex large subunit Rpc1
(predicted) [Schizosaccharomyces pombe]
gi|76782169|gb|ABA54855.1| RNA polymerase III largest subunit Rpc1 [Schizosaccharomyces pombe]
Length = 1405
Score = 257 bits (656), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 195/644 (30%), Positives = 313/644 (48%), Gaps = 84/644 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
K EA LM + + + P++G P+ QD + + LSL+DTFL R N+ C +
Sbjct: 510 KTEALELMGIKNNLVSPRNGEPIIAATQDFITAAYLLSLKDTFLDRKSISNIC----CYM 565
Query: 73 ---NTEIRTLPPTIWKPMPLWTGKQVL---------STVIINLTPKDKVIIRHGELLSGI 120
+T I PP I KP LWTGKQV S V++NL K + R +
Sbjct: 566 MDASTHIDLPPPAIIKPRCLWTGKQVFTVLMKPNRFSKVLVNLDAKTRSFSRIKSKTPEM 625
Query: 121 LDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQY-GLVHAVWDTHGAEHA 179
K D ++ IR+ E+++G++DK G + L + + +GA A
Sbjct: 626 CPK---------------DGYLMIRNSEIIAGVVDKSVVGDGKKDSLFYVILRDYGALEA 670
Query: 180 ISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPL 239
++ L+K+ +L GF++G+ D+ + ++ ++NKA + L
Sbjct: 671 AEAITRLSKMCARFLGNRGFSIGIEDVQPGKSLSSQKEILVNKAYATSDDFIMQYAKGIL 730
Query: 240 DTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQF 299
+ P + EA S S L KV +++ ++C+ E PAN+
Sbjct: 731 ECQPGMDQEATLEAKIS-------------STLSKVRDDVGEICMDE----LGPANSPLI 773
Query: 300 MVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFM 359
M G+KGS +N Q+ +GQ + GKR R+LP F P A GFV F
Sbjct: 774 MATCGSKGSKINVSQMVACVGQQIISGKRVPDGFQDRSLPHFHKNSKHPLAKGFVSNSFY 833
Query: 360 TGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQ 419
+G+ P EF FH ++GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR S+ ++Q
Sbjct: 834 SGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSAYDGTVRSSNSDVVQ 893
Query: 420 VLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTF--KS 477
+YG+DGLD T + D Q +E WI + V LN +H ++ ++ + ++
Sbjct: 894 FVYGDDGLDPTYME--GDGQ--AVEFKRTWI--HSVNLN-YDRHDSAMLPYEIIDYVNRA 946
Query: 478 SGKPNFIFSPHRTKFTMDLLE--QWYQLDDKARKKYRKKFKACPQPLISTFQPDA----- 530
P F+ + +R D +E + + +++ A+ + + P++ +PD
Sbjct: 947 LDDPKFLTNCNR-----DFIETIRTFVIENIAKYLASVRERRDLAPMLE--EPDMDDLDD 999
Query: 531 ----HFGSISENLA-DSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQS 585
F +++ + +++++ T+ + F D + K + + PG VG + AQS
Sbjct: 1000 MEGDEFAPVAKRKSVENIIRVTE-----KQLRSFVDRCWEKYMRAKVEPGTAVGAIGAQS 1054
Query: 586 IGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
IGEP TQMTL TFHFAG TLG+PR++EI+ A K I TP
Sbjct: 1055 IGEPGTQMTLKTFHFAGVA-AQTTLGVPRIKEII-NAAKTISTP 1096
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 63/121 (52%), Gaps = 1/121 (0%)
Query: 890 KLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMN 949
K N + M GIEAA II E+ A +G+ VDPRH+ L+ D MT G + +
Sbjct: 1259 KTSTNHVMEMKDVLGIEAARYSIISEIGYTMAKHGLTVDPRHIMLLGDVMTCKGEVLGIT 1318
Query: 950 RNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRN 1008
R G+ ++ S + +FE + + A+ + +DS+ S ++LG+ GT +FQL
Sbjct: 1319 RFGVAKMKDSVLALASFEKTTDHLFNAAARFAKDSIEGISECIVLGKLAPIGTNVFQLIR 1378
Query: 1009 R 1009
R
Sbjct: 1379 R 1379
>gi|403214358|emb|CCK68859.1| hypothetical protein KNAG_0B04240 [Kazachstania naganishii CBS 8797]
Length = 1455
Score = 256 bits (655), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 204/660 (30%), Positives = 308/660 (46%), Gaps = 96/660 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + L PK G P+ QD + +S +D+F L+ +
Sbjct: 528 RAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDLGSLTQLL-SMMSDA 586
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLS---------TVIINLTPKDKVIIRHGELLSGILDK 123
+ PP I KP LWTGKQV S V+INL K+KV I +
Sbjct: 587 KLQFDIPPPAIMKPYYLWTGKQVFSLLIRPNKKSPVVINLDAKNKVYIPPKD-------- 638
Query: 124 KQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFG-STQYGLVHAVWDTHGAEHAISL 182
K F + ++ D V IR E+LSG++DK G ++ + + + +G + A +
Sbjct: 639 KSFPNEM-----SINDGFVIIRGSEILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANT 693
Query: 183 LSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNAL-----GL 237
++ +AKL YL GF++G+ D+ + K+ +++ A A C+ L
Sbjct: 694 MNRMAKLCARYLGNRGFSIGISDVTPSSDLRDKKEEMVRFAY-----AKCDELIDMFKNG 748
Query: 238 PLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPE--GLIEPFPAN 295
L+T P Q EA + LL KV + VC+ E L P
Sbjct: 749 KLETQPGCNEEQTLEA-------------KIGGLLSKVREEVGDVCINELDNLNAPL--- 792
Query: 296 NLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVD 355
M G+KGST+N Q+ ++GQ + G R R+LP F +P++ GFV
Sbjct: 793 ---IMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFQKNSKTPQSKGFVR 849
Query: 356 GRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDL 415
F +G+ P EF FH ++GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR S
Sbjct: 850 NSFFSGLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDDTVRTSAN 909
Query: 416 SLIQVLYGEDGLDVTKRQYLTDKQFSFLED-----NIKW------ICSYKVIL---NLLK 461
++Q YG DGLD + K +F+ NI + + Y+++ N+LK
Sbjct: 910 GIVQFTYGGDGLDPLDMEG-NAKPVNFIRSWDHACNITFNKNETGLLPYEIVRETDNVLK 968
Query: 462 KHPLSLALLLLLTFKSSGK--PNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACP 519
PL L+ + + G P + R D +Y K+ + Y ++ A
Sbjct: 969 --PLEEK---LIRYDNLGAVVPKELIDDERYADRHDAERAFY----KSLRMYMQEKAA-- 1017
Query: 520 QPLISTFQPDAHFGSISENLADSVVKYTKGRTDAS----------HVDKFYDMIFYKNLL 569
++ + +++N D+ ++ AS +V+ F + +K
Sbjct: 1018 --RLAQIRNTRGLLEMTQNGGDTSMEVVSSELQASVDQVYKITKKNVNAFLTIALHKYHR 1075
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
+ PG VG + AQSIGEP TQMTL TFHFAG MNVTLG+PR++EI+ A+K I TP
Sbjct: 1076 AKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII-NASKVISTP 1134
Score = 70.1 bits (170), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 66/119 (55%), Gaps = 1/119 (0%)
Query: 889 NKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAM 948
+K N + + S GIEAA I+ E+ + +G+ VDPRH+ L+ D MT+ G + +
Sbjct: 1307 SKTITNHVLEVNSVLGIEAARASIVGEIDYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGI 1366
Query: 949 NRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
R G+ ++ S +Q +FE + + A+ ++D++ S ++LGQ GTG F++
Sbjct: 1367 TRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVSECIILGQTMSVGTGSFKV 1425
>gi|345567741|gb|EGX50669.1| hypothetical protein AOL_s00075g95 [Arthrobotrys oligospora ATCC
24927]
Length = 1442
Score = 256 bits (655), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 198/637 (31%), Positives = 306/637 (48%), Gaps = 60/637 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+ EA LM V + P++G P+ IQD + + LS +D F R + LC+
Sbjct: 527 RTEAINLMGVKNNLCTPRNGEPIIAAIQDFITAAYLLSNKDNFFDRKSF-----ATLCMF 581
Query: 73 ----NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGS 128
N +I PP + KP +WTGKQ+ S V+I K KV++ L + D K
Sbjct: 582 MVNGNEQIDLPPPAVIKPEAMWTGKQLFS-VLIKPNKKSKVVL---NLDAKCRDFKAVPG 637
Query: 129 TQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLV-HAVWDTHGAEHAISLLSCLA 187
L D + IR E++ G++DK GS + V + + +GA+ A++ ++ LA
Sbjct: 638 MAPDLCPN--DGWLVIRGSEVMCGLMDKSTVGSGKKSSVFYVILRDYGADEAVAAMNRLA 695
Query: 188 KLFTVYLQRVGFTLGVRDILVRQE-RDRKRTKIINKARRLGTEAACNALGLPLDTDPEII 246
KL +L GF++G+ D+ Q+ +D K+ ++ + C+ L +D +
Sbjct: 696 KLCARWLGNRGFSIGINDVSPGQKLQDLKQMHVMAAYKE------CDNL---ID---DFR 743
Query: 247 SSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAK 306
+L++A + ++ + +L KV + + +C+ E N+ M SG+K
Sbjct: 744 LGRLEKAAGCDEE--TTLENKISGVLSKVRDKVGDICMSE----LSRMNSPLIMANSGSK 797
Query: 307 GSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQE 366
GS +N Q+ +GQ + GKR R+LP F P + GFV F +G+ P E
Sbjct: 798 GSKINVSQMVACVGQQIISGKRVPNGFQDRSLPHFQKNSKEPPSKGFVRNSFFSGLTPTE 857
Query: 367 FFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDG 426
F FH ++GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR+S ++Q YG D
Sbjct: 858 FLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSAQYDHTVRNSSAGVVQFQYGGDN 917
Query: 427 LDVTK-----------RQYLTDKQFSFLEDNIKWICSYKVIL---NLLKKHPLSLALLLL 472
LD R Y + ++ ++N + Y++I LL L A+L
Sbjct: 918 LDPVDMEGDAKPVNLVRTYNHAENLTW-DNNDPSLLPYEIIAMCRELLDFDELE-AMLAR 975
Query: 473 LTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHF 532
L F F + + AR + R AC +P+ S +
Sbjct: 976 LGPTDEIDSKVAFRQSLYHFVKERAVEC------ARIRERVGLMACLEPVDSDEYDMGYI 1029
Query: 533 GSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQ 592
S++ A ++V + A + +F K S PG VG + AQSIGEP TQ
Sbjct: 1030 DSLNAT-AKAIVDRVH-KISARTLREFISQCMTKYSRSKVEPGTAVGAVGAQSIGEPGTQ 1087
Query: 593 MTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
MTL TFHFAG MNVTLG+PR++EI+ A+K+I TP
Sbjct: 1088 MTLKTFHFAGVASMNVTLGVPRIKEII-NASKSISTP 1123
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 1/121 (0%)
Query: 890 KLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMN 949
K N + M + GIEAA II E+ +G++VDPRH+ L+ D MT+ G + +
Sbjct: 1292 KTKTNSVMEMRTVLGIEAARFTIIDEISFTMREHGMDVDPRHIQLLGDVMTYKGEVLGIT 1351
Query: 950 RNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRN 1008
R G+ ++ S +Q +FE + + A+ ++D + S ++LGQ GTG FQ+
Sbjct: 1352 RFGLAKMRDSVLQLASFEKTTDHLFDAAFHTKKDKIEGVSECIILGQSMGIGTGAFQVVR 1411
Query: 1009 R 1009
R
Sbjct: 1412 R 1412
>gi|383861274|ref|XP_003706111.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
[Megachile rotundata]
Length = 2015
Score = 256 bits (655), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 207/659 (31%), Positives = 316/659 (47%), Gaps = 70/659 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM S + P++G L QD + G L+ +D FL +++ L L L
Sbjct: 1150 RAEALVLMGNKSNLVTPRNGELLIAATQDFITGGYLLTQKDMFLNKSQASQLAGCLLAGL 1209
Query: 73 NTEIRT-LP-PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ + LP P I KP LWTGKQ+ S + L P IR + + K + +T
Sbjct: 1210 DIAMSIDLPEPAILKPTVLWTGKQIFSLI---LKPNKMCNIR-----ANLKTKGRAYTTN 1261
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L + D++V IR+ ELL+G +DK GS ++ + + + G + A + + LA++
Sbjct: 1262 EEL--CINDSYVIIRNSELLAGSMDKSTLGSGSKQNIFYILLRDWGEDIATTAMWRLARM 1319
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
+ +L GF++G+ D+ Q + + ++++ TE L P +
Sbjct: 1320 ASFFLMNRGFSIGIGDVTPGQGLLKAKQELLHAGYSKCTEYIHQMEEGRLVCQPGCTEEE 1379
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
EA I ++ L + ++ + CL E P+N+ M SG+KGS
Sbjct: 1380 TLEA---------MILKE----LSVIRDHAGKACLKE----LHPSNSPLVMALSGSKGSF 1422
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ +GQ + G R R LP F + P A GFV+ F +G+ P EFFF
Sbjct: 1423 INISQMIACVGQQAISGHRVPNGFEDRALPHFERHSKIPAAKGFVENSFYSGLTPTEFFF 1482
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H M GREGL+DTAVKT+ +GY+QR LVK LE L +HYDMTVR+S ++Q+LYG D LD
Sbjct: 1483 HTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCLHYDMTVRNSVGDIVQILYGGDALDP 1542
Query: 430 TKRQYLTDKQFSFLEDNIKWICSYKVILNLLK-KHPLSLALLLLLTFKSSGKPNFIFSPH 488
T Y+ K YK +L+ ++ K P +S P+ I +
Sbjct: 1543 T---YMEGKDCPV---------DYKRVLDHVRAKSPCK-------NEQSLDGPSVITA-- 1581
Query: 489 RTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAH-FGSISENLADSV-VKY 546
T +LL + ++Y K Q L + + A + N ++ V
Sbjct: 1582 ----TNELL---------SSEEYECLSKEFKQELATFLKSIARKIARLRHNAPSNIPVIL 1628
Query: 547 TKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDM 606
R S + +F + K + + PG VG LAAQSIGEP TQMTL TFHFAG M
Sbjct: 1629 QLERLTVSQLVEFIHICKEKYMRAKIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASM 1688
Query: 607 NVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKV 665
N+T G+PR++EI+ A I TP + D+ + A R+ + + T+ +V E +
Sbjct: 1689 NITQGVPRIKEII-NANPKISTPIITAALENDVDP--EYARRVKGRIEKTTLGEVTEYI 1744
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
Query: 902 TYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFI 960
T GIEAA I+ E+K V +G+ +D RH LVAD MT G + + R G+ ++ S +
Sbjct: 1883 TLGIEAARATIMTEIKLVMENHGMSIDRRHPMLVADLMTSRGEVLGITRQGLAKMKESVL 1942
Query: 961 QKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNR 1009
+FE + + A+ G++D + S +++G GTG+F+L ++
Sbjct: 1943 NLASFEKTADHLFDAAYYGQKDVICGVSESIIMGIPVPLGTGIFKLLHK 1991
>gi|409049560|gb|EKM59037.1| hypothetical protein PHACADRAFT_169499 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1403
Score = 256 bits (654), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 199/670 (29%), Positives = 312/670 (46%), Gaps = 41/670 (6%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+ EA LM+V + P++G P+ IQD + + LS RD F R ++ + L
Sbjct: 509 RTEALELMSVKHNLVTPRNGEPVIAAIQDFITASFLLSRRDRFFDRCQFTQIC-SYLADA 567
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGI--LDKKQFGSTQ 130
+ +I PPTI KP LWTGKQ+ + V++ +V + + + D K +
Sbjct: 568 DLQIDIPPPTILKPQRLWTGKQIFN-VLMRPNRHSRVRVNVESRCNKVEKPDPKAYPRMT 626
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
+ D + I + E++ G++DK GS + + + +G A + + LAKL
Sbjct: 627 PVDDMSPNDGWLVIVNSEIMCGVMDKATVGSGKKKSIFGVILRDYGPHEAATAMGRLAKL 686
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
YL GF+LG+ D++ ++ ++ KA + A L+ P Q
Sbjct: 687 CARYLANYGFSLGINDVIPGPILAAQKESMVQKAYAECDDLIARAKKGLLENKPGCDQEQ 746
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
EA S S+L V + ++C+ E P M SG+KGS
Sbjct: 747 TLEAMIS-------------SVLSNVREKVGEICMKELSRHNAPL----IMATSGSKGSV 789
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ +GQ + G R R+LP F P + GFV F TG+ P EF F
Sbjct: 790 INVSQMVACVGQQIIAGHRVPDGFQDRSLPHFPKKSREPPSKGFVRNSFYTGLTPTEFLF 849
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H ++GREGL+DTAVKT+ +GY+QR L+K LE L HYD +VR++ ++Q YG+DGLD
Sbjct: 850 HAISGREGLVDTAVKTAETGYMQRRLMKALEDLVTHYDSSVRNAVGGVVQFRYGDDGLDP 909
Query: 430 TKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPHR 489
+ D Q ++++ ++ + + L +L F + F+
Sbjct: 910 ACLE--GDAQ------PVEYLRAWSHASAIASRSSRGLFPFEILEFVNQELAKPKFTGEC 961
Query: 490 TKFTMDLLEQWYQLDDKAR----KKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVK 545
+ + + ++ R +K R F+A + + D G+ SE AD V+
Sbjct: 962 SAAYLSTIREFVSEHIAQRLANIRKSRGMFEALEREPEWSEHTDLSMGA-SE--ADKVIV 1018
Query: 546 YTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGD 605
+ + V F + + K + + PG VG + AQSIGEP TQMTL TFHFAG
Sbjct: 1019 DNRSKVTEDQVRTFLAICWTKYVKAKIEPGSTVGAVGAQSIGEPGTQMTLKTFHFAGVAS 1078
Query: 606 MNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKK--ANRLAKSMTRITMADVLE 663
MNVTLG+PR++EI+ A K I TP + + + + RL K+ R +A VLE
Sbjct: 1079 MNVTLGVPRIKEII-NAAKVISTPIISCKLVTSDNEASARIVKGRLEKTHLR-DVAGVLE 1136
Query: 664 KVKIKEWLEI 673
+ E+ I
Sbjct: 1137 EAWAPEYTYI 1146
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N + A GIEAA R II E++ A +G+ +DPRH+ L+ D MT+ G + + R G+
Sbjct: 1270 NHVIETAQVLGIEAARRAIINEIQYTMASHGMSIDPRHVMLLGDVMTYKGEVLGITRFGV 1329
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLG 994
++ S + +FE + + AS G+ DS+ S +++G
Sbjct: 1330 AKMKDSVLMLASFEKTTDHLFDASALGKTDSILGVSESIIMG 1371
>gi|72393077|ref|XP_847339.1| DNA-directed RNA polymerase I largest subunit [Trypanosoma brucei
TREU927]
gi|62176646|gb|AAX70750.1| DNA-directed RNA polymerase I largest subunit [Trypanosoma brucei]
gi|70803369|gb|AAZ13273.1| DNA-directed RNA polymerase I largest subunit [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 1781
Score = 256 bits (654), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 166/457 (36%), Positives = 239/457 (52%), Gaps = 58/457 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALC-- 70
+AE LM+ + YLVP G P+ GLIQDHV +G ++LRD F + ++ LVY +
Sbjct: 651 RAEVETLMDANINYLVPTSGRPIRGLIQDHVAAGVLVTLRDKFFDHSTFVQLVYNGVGPY 710
Query: 71 ----ILNTEIRTLP-PTIWKPMPLWTGKQVLSTVI-----INLTPKDKVIIRHGELLSGI 120
+ T +P P I P P+WTGKQ++S ++ ++ I G L G
Sbjct: 711 IQENVGITLAELIPIPAILMPRPMWTGKQLISVMVRFSSGLSAASDCGREIEGGITLKGT 770
Query: 121 -------LDKKQFGSTQYGLVH--AVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVW 171
D+ GS V AV D+ V + EL++G + KKQ G++ H V+
Sbjct: 771 SQIQPSAFDRIPAGSCDAVRVKSGAVVDSTVMFANSELITGFMCKKQLGASNMSAPHHVY 830
Query: 172 DTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDI-LVRQERDRKRTKIINKARRLGTEA 230
+ +G L + ++ + L++ G +L + D+ LV +ER R ++ K +
Sbjct: 831 ELYGPHRTGQLFAAFGRVLLLALRKEGLSLAMDDMFLVDEER---RCDLLRKLDDI---- 883
Query: 231 ACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIE 290
AL +P D E ++ + YA+ I Q +P+ ++
Sbjct: 884 ---ALDVP---DEEATAAPMIADYAT---------------------KIQQEFVPQRMLV 916
Query: 291 PFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRA 350
PFP N+L M SGAKGS +N Q+S LGQ +G R M S +TLPSF E R+
Sbjct: 917 PFPKNHLLLMTISGAKGSNLNATQMSLQLGQQLFDGLRVKRMNSSKTLPSFFTNEKRARS 976
Query: 351 GGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTV 410
GF G F +GI+P E+ H MAGR+GLIDTAVKTSRSG+LQRCL+K LE L VH+D TV
Sbjct: 977 FGFAMGSFASGIRPAEYTIHAMAGRDGLIDTAVKTSRSGHLQRCLIKGLESLVVHWDRTV 1036
Query: 411 RDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNI 447
RDS+ S+IQ +YG DGLD K LT + ++DN+
Sbjct: 1037 RDSNGSVIQFMYGGDGLDPCKASTLT--AWEMMKDNV 1071
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 64/105 (60%), Gaps = 2/105 (1%)
Query: 561 DMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILM 620
D+ + L +L PGE VG+LAAQ+ GEPSTQMTLNTFH AG +VT GIPRLRE+L+
Sbjct: 1183 DITARRRLWALCEPGEPVGLLAAQAAGEPSTQMTLNTFHTAGSTVSHVTEGIPRLRELLI 1242
Query: 621 MATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKV 665
A+ + ++ +P + EK ++ ++ + D L KV
Sbjct: 1243 YAS--VNKAAVVVPVTNATEEDEKVIAKMLRAGVAAKLTDCLAKV 1285
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+ L++ DI M + +GIE+ + E+ +F Y VDPRHLSL+AD TH G +
Sbjct: 1646 IKLHQACSTDIRDMGTYFGIESGYAALYDELNKLFNRY--NVDPRHLSLIADTSTHRGRW 1703
Query: 946 VAMNRNG-IRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
N G I + S + +MTF + +A +G D L + S+ +M+G+ R GT
Sbjct: 1704 ENFNFTGVISTSASPLFQMTFASSKRWLHRAVSRGMSDDLESFSSAIMVGERPRVGTASV 1763
Query: 1005 QL 1006
+L
Sbjct: 1764 RL 1765
>gi|452982836|gb|EME82594.1| hypothetical protein MYCFIDRAFT_187946 [Pseudocercospora fijiensis
CIRAD86]
Length = 1442
Score = 256 bits (653), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 208/679 (30%), Positives = 327/679 (48%), Gaps = 75/679 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLV---YQAL 69
+ EA+ LM V PK+G+P+ IQD + +S +D F +R ++ +V Y A+
Sbjct: 538 RTEATELMGVKHNLATPKNGTPIIAAIQDFITGAYLVSQKDLFFSRRQFTQVVGFMYNAM 597
Query: 70 CILNT------EIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDK 123
+ + I+ PP IWKP LWTGKQV + ++I PK V + L
Sbjct: 598 QVKDPYTGEEYPIQIPPPAIWKPQCLWTGKQVWN-LLIKPHPKYPVNVNLEAKL------ 650
Query: 124 KQFGS-TQYGLVHAVWDT--HVTIRHGELLSGILDKKQFGSTQYGLV-HAVWDTHGAEHA 179
KQ+ T+ G + + DT ++ IR+ E++ G DK G + V + + G E+A
Sbjct: 651 KQYAPPTRKGDIPDMVDTDSYLVIRNSEVMCGAFDKATIGDGKKDSVFYVILRDFGPEYA 710
Query: 180 ISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPL 239
+ ++ LAKL +L GF++G+ D+ +++ +++ A + C+
Sbjct: 711 AAAMTRLAKLSARWLGEQGFSIGISDVYPSDTLTKRKQALVDAAYK-----QCD------ 759
Query: 240 DTDPEIIS----SQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPAN 295
EII +L+ + + +I LL + + + Q C E N
Sbjct: 760 ----EIIDKYKKGKLERSAGCDEEQTMEI------LLSGILSKVRQQCGDACFAELSKFN 809
Query: 296 NLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVD 355
M + G+KGS +N Q+ +GQ + GKR RTLP F P A GFV
Sbjct: 810 APMTMAKCGSKGSNINVSQMVAAVGQQIIGGKRVLEGFQDRTLPHFPKASRDPLAKGFVF 869
Query: 356 GRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDL 415
F +G+ P EF FH M+GREGL+DTAVKT+ +GY+ R L+K LE L+ YD+TVR+S
Sbjct: 870 DSFFSGLTPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSAQYDLTVRNSSS 929
Query: 416 SLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTF 475
++Q+ +G+DGLD + + K +F W+ S I + +L + T+
Sbjct: 930 GVVQMKFGDDGLDPVDMEG-SAKPVNFER---TWMHS---ITSTWDNAERALTQSEIETY 982
Query: 476 KSSGKPNFIFSPHRTK---FTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPD--A 530
N + R K FT D Y DDK + ++ +++ F D +
Sbjct: 983 V-----NTTLNKERAKLGRFTEDRKPLPYD-DDKPMSTDQSEYSRQFLDVVTNFIMDKVS 1036
Query: 531 HFGSISENL--ADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGE 588
S L +D V K ++ + +D F + +K S G VG + AQSIGE
Sbjct: 1037 KMVSTQNRLKNSDGVFKLSQ-----AALDCFLHLCLHKFEKSKTEAGHAVGAVGAQSIGE 1091
Query: 589 PSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANR 648
P TQMTL TFHFAG M++T G+PR++EI+ A+K I TP + K E+ A R
Sbjct: 1092 PGTQMTLKTFHFAGVAGMSITQGVPRIKEII-NASKVISTPVITCAL---DSKYEEMAGR 1147
Query: 649 LAKSMTRIT-MADVLEKVK 666
AK++ T + D+++ V+
Sbjct: 1148 FAKALIEKTYLGDIVDYVE 1166
Score = 69.7 bits (169), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 66/114 (57%), Gaps = 3/114 (2%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N++ M GIEAA + II E+ +V G+++DPRH+ L+AD MT+ G + + R G+
Sbjct: 1321 NNVMEMRDVLGIEAARKTIIDEISSVMG--GMDIDPRHMQLLADVMTYKGEVLGITRFGL 1378
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
++ S +Q +FE + + A+ + ++D + S +++GQ GTG ++
Sbjct: 1379 AKMRDSVLQLASFEKTPDHLFDAAARMKKDDIEGVSECIIMGQSMSVGTGAMKV 1432
>gi|149234447|ref|XP_001523103.1| DNA-directed RNA polymerase III largest subunit [Lodderomyces
elongisporus NRRL YB-4239]
gi|146453212|gb|EDK47468.1| DNA-directed RNA polymerase III largest subunit [Lodderomyces
elongisporus NRRL YB-4239]
Length = 1450
Score = 256 bits (653), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 199/642 (30%), Positives = 298/642 (46%), Gaps = 63/642 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + L PK G P+ QD + +S +DTFL RA + L+ +
Sbjct: 530 RAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDTFLDRASLVQLL-SMMSDA 588
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ PP I+KP+ LWTGKQV S ++I + KVII L+ +
Sbjct: 589 DIHFDIPPPAIFKPVMLWTGKQVFS-LLIKPNKQSKVIIN----LNAKNKTCHPAPKGFP 643
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLV-HAVWDTHGAEHAISLLSCLAKLFT 191
+ D +V IR ++LSG++DK G + V + + +G A + ++ +AKL
Sbjct: 644 PEMSTNDGYVVIRGSQILSGLMDKSTLGDGKKDSVFYVILRDYGPHEAAAAMNRMAKLCA 703
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNAL-----GLPLDTDPEII 246
YL GF++G+ D+ E +K+ ++ +A C+ L L+T P
Sbjct: 704 RYLGNRGFSIGINDVTPATELRQKKELMVEQAY-----LKCDQLIDLFNRGKLETQPGCN 758
Query: 247 SSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPE--GLIEPFPANNLQFMVESG 304
+ EA + LL KV + C+ E L P M G
Sbjct: 759 EEETLEA-------------KIGGLLSKVREEVGNECIRELDSLNAPL------IMATCG 799
Query: 305 AKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQP 364
+KGS VN Q+ ++GQ + G R R+LP F +P++ GFV F +G+ P
Sbjct: 800 SKGSIVNVSQMVAVVGQQIISGHRVPDGFQDRSLPHFTKNSKTPQSKGFVRNSFFSGLSP 859
Query: 365 QEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGE 424
EF FH ++GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR+S ++Q YG
Sbjct: 860 PEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSAQYDDTVRNSSNGIVQFTYGG 919
Query: 425 DGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFI 484
DGLD + K +F+ +W +Y + + K L ++ ++ + +
Sbjct: 920 DGLDPYDMEG-DAKPVNFIR---QWDHAYNLTFSANDKSLLPYQIMDVVEQTLRPREEAL 975
Query: 485 FSPHRTKFTMDLLEQWYQLDDKARKKYR--KKFKACPQPLIST------FQPDAHFGSIS 536
+ T D Q D R+ YR + F A ++ +P F S
Sbjct: 976 KTGDEEGKTED---QLVDQKDAQREFYRSVRDFMAQKAERLARLREERGLKPYFTFDKQS 1032
Query: 537 ENLADSVVKYTKGRTDA---------SHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIG 587
+ + V+ + +A V F YK + G VG + AQSIG
Sbjct: 1033 SDQDEMVLDEDASKVNAIDQLMKISKKTVKIFLTQCLYKYSRAKVEAGTAVGAIGAQSIG 1092
Query: 588 EPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
EP TQMTL TFHFAG MNVTLG+PR++EI+ A+K I TP
Sbjct: 1093 EPGTQMTLKTFHFAGVASMNVTLGVPRIKEII-NASKTISTP 1133
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 99/208 (47%), Gaps = 23/208 (11%)
Query: 800 SEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNL 859
S + +D +N+ R ++ R ++ +K + N V D K + L
Sbjct: 1237 SLKSGEDQRNNLFFRMQLLKRVLPDICIKGLPNIFRAVINIKDDNKKEL----------L 1286
Query: 860 FEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNV 919
E K ++ T+GI V + H+L++N++ GIEAA IIRE+
Sbjct: 1287 VEGYGLKDVMNTEGI-VGTKTTTNHVLEVNEIL-----------GIEAARSSIIREIDYT 1334
Query: 920 FAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQ 978
+ YG+ VDPRH+ L+ D MT+ G + + R G+ ++ S +Q +FE + + A+
Sbjct: 1335 MSNYGMSVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFY 1394
Query: 979 GREDSLRAPSARVMLGQECRQGTGLFQL 1006
+ D + S ++LGQ GTG F+L
Sbjct: 1395 MKRDKIEGVSECIILGQTMAIGTGAFKL 1422
>gi|302673160|ref|XP_003026267.1| hypothetical protein SCHCODRAFT_71335 [Schizophyllum commune H4-8]
gi|300099948|gb|EFI91364.1| hypothetical protein SCHCODRAFT_71335 [Schizophyllum commune H4-8]
Length = 1402
Score = 255 bits (652), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 198/633 (31%), Positives = 296/633 (46%), Gaps = 55/633 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+ EA LM+V + P++G P+ IQD + + LS +DTF R + Q C L
Sbjct: 507 RTEALELMSVKHNLVTPRNGDPVIAAIQDFITASYLLSRKDTFFDRRAFT----QICCYL 562
Query: 73 ---NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGST 129
N +I PPTI KP LWTGKQ+ + V++ K KV + + + + K+
Sbjct: 563 ADANMQIDIPPPTILKPQRLWTGKQIFN-VLMRPNRKSKVFVNVECKCNKVEEVKK---E 618
Query: 130 QYGLVHA------VWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISL 182
Y + D + I + E++ G++DK GS + + + +G A +
Sbjct: 619 HYPAIEKPRNDLMANDGWLVIVNSEIMCGLMDKATIGSGKKKSIFGVILRDYGPHEAAAA 678
Query: 183 LSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTD 242
++ +AKL YL GF+LG+ D++ E K+ +I KA + A L
Sbjct: 679 MNRVAKLCARYLANYGFSLGINDVIPGPELTEKKEDLIEKAYAECLDKIALAKKGGLKNK 738
Query: 243 PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
P Q EA S S+L V Q+C+ E P M
Sbjct: 739 PGCDQEQTLEAEIS-------------SILSNVREKAGQICMRELSRHNAPL----IMAT 781
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
SG+KGS +N Q+ +GQ + G R R+LP F P + GFV F TG+
Sbjct: 782 SGSKGSVINVCQMVACVGQQIIAGHRVPDGFQDRSLPHFPKKSKEPPSKGFVRNSFYTGL 841
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
EF FH ++GREGL+DTAVKT+ +GY+QR L+K LE LT YD+TVR+S ++Q Y
Sbjct: 842 VATEFLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLTTQYDLTVRNSAAGVVQFRY 901
Query: 423 GEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPN 482
G+DGLD + D Q E W+ S + + L ++ +S
Sbjct: 902 GDDGLDPACLE--GDAQPIDFER--AWVHSAAI----ASRKGRGLLPFEVMDLMNSEMAK 953
Query: 483 FIFSPHRTKFTMDLLEQWYQLDDKARKKY------RKKFKACPQPLISTFQPDAHFGSIS 536
+ T MD + + +++K K+ R + A + I + + +
Sbjct: 954 SKWVSECTTTYMDSIRDF--IEEKVAKRLAILRERRGMYDAMER--IDDWDEEMDLSMGA 1009
Query: 537 ENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLN 596
+ +VV T+A + F + + K + + PG VG + AQSIGEP TQMTL
Sbjct: 1010 SDADKAVVDNKAKVTEA-QLRTFLQIAWTKYVKARIEPGSTVGAVGAQSIGEPGTQMTLK 1068
Query: 597 TFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
TFHFAG MNVTLG+PR++EI+ A+K I TP
Sbjct: 1069 TFHFAGVASMNVTLGVPRIKEII-NASKNISTP 1100
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 61/115 (53%), Gaps = 2/115 (1%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N + +A GIEAA R II E++ + + +DPRH+ L+ D M++ G + + R G+
Sbjct: 1269 NHVIEVAQVLGIEAARRTIINEIQYTMKSHDMNIDPRHVMLLGDVMSYKGEVLGITRFGV 1328
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQ-GTGLFQL 1006
++ S + +FE + + A+ G+ D++ S +++G Q GT + L
Sbjct: 1329 AKMKDSVLMLASFEKTTDHLFDAAAYGKSDAIAGVSESIIMGNPAAQCGTSMPAL 1383
>gi|145492039|ref|XP_001432018.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124399125|emb|CAK64620.1| unnamed protein product [Paramecium tetraurelia]
Length = 1360
Score = 255 bits (651), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 200/648 (30%), Positives = 306/648 (47%), Gaps = 119/648 (18%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
++EA LM+V K G L L+QD + + ++ +D F +R ++M A
Sbjct: 480 RSEALILMDVKKNLKTIKSGESLVCLLQDFLTTAWLITNKDVFYSREQFMQFC-AAFSDS 538
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N +I PTI KP LWTGKQV++ +++ K ++++ L+ K+ + + G
Sbjct: 539 NEQIDLPAPTILKPKQLWTGKQVINALLVP-NRKTRLVLN--------LEAKESNAFK-G 588
Query: 133 LVHAVW----DTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAK 188
+ +W D +V EL+ G + KK G+++ GL +A+ + + A S++ AK
Sbjct: 589 KLDYLWMDPGDGYVVFDKCELVCGNIGKKVLGASKLGLFYALIRDNSTQIAASVMQRFAK 648
Query: 189 LFTVYLQRVGFTLGVRDIL--------VRQERDRKRTKIINKARRLGTEAACNALGLPLD 240
L + ++ G T+G+ D++ + Q ++ + + R L +D
Sbjct: 649 LSSRWISHYGMTIGIGDVMAPKSLIEQIHQSTEQSYLQCKHYQRSL------------ID 696
Query: 241 TDPEIISSQLQEAYA--SIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQ 298
DP + Q EA ++ R Q+ + + L N +
Sbjct: 697 ADPGLTVEQTLEAKVNKTLSDVREQVGSKCQEQLKS-------------------DNKVL 737
Query: 299 FMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRF 358
M GAKGS VN Q+ +GQ + GKR +GRTLP F Y + P+A GFV F
Sbjct: 738 IMYLCGAKGSNVNVAQMIGCVGQQVISGKRVPEGFTGRTLPHFKDYILHPKAKGFVKNSF 797
Query: 359 MTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDL-SL 417
TG+ EF+FH MAGREGL DTAVKT+ +GY+QR LVK LE L + YD+TVR D +
Sbjct: 798 YTGMDAIEFYFHNMAGREGLTDTAVKTATTGYMQRRLVKMLEDLHIAYDLTVRSCDTKEI 857
Query: 418 IQVLYGEDGLD---------VTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLA 468
+Q YGEDGLD V K Q L F+ L N +++LN K+H L
Sbjct: 858 VQFRYGEDGLDPLAVEDANEVIKLQNLLTNSFTVLRKN-------QILLN--KEHMLIKL 908
Query: 469 LLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQP 528
L + I KF LE + +K +K+ + FK+ Q
Sbjct: 909 DELFM----------IIEERHKKF----LENYEATYEKEKKRVQALFKSTNQ-------- 946
Query: 529 DAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGE 588
+SE ++ S +++F M+ PG +VG + +QSIGE
Sbjct: 947 -----QVSEKQLQWFIR--------SWMERFLTMVM--------APGTSVGPITSQSIGE 985
Query: 589 PSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFL 636
P+TQMTL TFH AG M++T G+PRL EI+ A+K IKTP + + +
Sbjct: 986 PATQMTLKTFHSAGVAGMSITQGVPRLNEII-NASKEIKTPQINVKLI 1032
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 68/122 (55%), Gaps = 1/122 (0%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D + N I + S GIEAA + I+ EV + I +D RH+ L+A+ MT G
Sbjct: 1215 IDWKRTVSNHIMEIQSALGIEAARQSIVNEVYTTMQSHSISIDIRHILLLAELMTFKGRI 1274
Query: 946 VAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
+ R GI +L S + +FE ++ A++QG++DS+ S RV++GQ QGTG+F
Sbjct: 1275 LGFTRQGIDQLKNSALMLASFEKTMDVFFNAAIQGKQDSMNGASQRVIIGQNVPQGTGMF 1334
Query: 1005 QL 1006
L
Sbjct: 1335 DL 1336
>gi|58268624|ref|XP_571468.1| DNA-directed RNA polymerase iii largest subunit [Cryptococcus
neoformans var. neoformans JEC21]
gi|57227703|gb|AAW44161.1| DNA-directed RNA polymerase iii largest subunit, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 1466
Score = 255 bits (651), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 196/679 (28%), Positives = 320/679 (47%), Gaps = 58/679 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+ EA LM+V + P++G P+ IQD + + LS RD F R ++ +V L
Sbjct: 527 RTEALELMSVKKNLVTPRNGEPIIAAIQDFITAAYLLSRRDRFYDRQQFTQIV-SYLDDA 585
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N +I PPTIWKP+ LWTGKQ+ + +++ + KV++ ++D + ++
Sbjct: 586 NLKIEMPPPTIWKPVRLWTGKQIFN-LLMRPNKESKVLVNLEAKCRTLVDPAK--EDRFP 642
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAV-WDTHGAEHAISLLSCLAKLFT 191
+ D ++ I++ E++ G+ DK G + V V +G E A ++ LAK+
Sbjct: 643 PDMSPNDGYLVIQNSEIMCGVFDKNTVGDGKKNSVFGVILRDYGPEEAAQAMNRLAKIAA 702
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQ 251
+L +GF+LG+ D++ I++ ++ E A + + +D + +L+
Sbjct: 703 RWLANIGFSLGINDVIP--------GPILHASKDARVEKAYDECDVFIDLAKK---GKLE 751
Query: 252 EAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVN 311
A + A ++ + L V + ++C+ E P M G+KGS +N
Sbjct: 752 NAPGCDQE--ATLESKISKTLSDVREAVGKICMQELSRHNAPL----IMATCGSKGSVIN 805
Query: 312 TMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHC 371
Q+ +GQ + G R R+LP F +P + GFV F +G+ P EF FH
Sbjct: 806 VAQMVACVGQQIIGGSRVRNGFQDRSLPHFRKKSKNPPSKGFVRNSFFSGLTPPEFLFHA 865
Query: 372 MAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTK 431
M+GREGL+DTAVKT+ +GY+ R L+K LE L HYD++VR+S ++Q YG+D LD
Sbjct: 866 MSGREGLVDTAVKTAETGYMARRLMKALEDLCTHYDLSVRNSVGGIVQFQYGDDMLDPA- 924
Query: 432 RQYLTDKQFSFLEDNIKWICSYKVILNLLKK-HPLSLALLLLLTFKSS-GKPNFIFSPHR 489
+ + +E W + + N + +P + + + S PNF S +
Sbjct: 925 ---CLEGDATPVEYVRSWTHACRTAGNQGRALYPYEVRRIAARIYPESFVPPNFSPSLPK 981
Query: 490 TK-------------FTMDLLEQWYQLDDKARKK-YR----KKFKACPQPLISTFQPDAH 531
TK L ++W K R+ Y+ K K ++ PDA
Sbjct: 982 TKSRRRKEPTPPPPVVAPTLPKEWEGCHHKFRENTYKFVVDKIVKQMVDQRLARGLPDAD 1041
Query: 532 FGSISE------NLADSVVKYT---KGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLA 582
++E N D V+ + + + F + + L + PG VG +
Sbjct: 1042 DEEMAEEYEALLNSDDPAVQRVLENANKVTEAQLSSFLENCRIRYLRAKIEPGSTVGAVG 1101
Query: 583 AQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKL 642
AQSIGEP TQMTL TFHFAG MNVTLG+PR++EI+ A K I TP + +P+
Sbjct: 1102 AQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII-NAAKVISTPIIAAELA--IPES 1158
Query: 643 EKKANRLAKSMTRITMADV 661
E A + + + + D+
Sbjct: 1159 ETAARIVKGRIEKTVLGDI 1177
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 89/196 (45%), Gaps = 25/196 (12%)
Query: 803 EEDDNTSNIG--ERFKIEFRDSTNVFVKDV-VNQHNIVHKYSYDKKNHMWCKLLFLPSNL 859
+E D +G ER K R +V VK + + +V K D+KN +LL L
Sbjct: 1244 DESDKDKGVGIYERLKFLKRAIPSVQVKGLPAIERGVVTK---DEKNEKIHRLLVTGYGL 1300
Query: 860 FEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNV 919
E ++ T+G+ D K N + GIEAA I E++
Sbjct: 1301 SE------VMGTEGV------------DGLKTKTNHVMETQQVLGIEAARSTIYNEIQTT 1342
Query: 920 FAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQ 978
+G+ +DPRH+ L+ D MT+ G + + R G+ ++ S + +FE + + AS+
Sbjct: 1343 MKSHGMSIDPRHVMLLGDVMTYKGEVLGITRFGVQKMKDSVLMLASFEKTTDHLFDASLY 1402
Query: 979 GREDSLRAPSARVMLG 994
++D ++ S +++G
Sbjct: 1403 SKKDEIQGVSECIIMG 1418
>gi|162219|gb|AAA30231.1| RNA polymerase I [Trypanosoma brucei]
Length = 1781
Score = 255 bits (651), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 165/457 (36%), Positives = 238/457 (52%), Gaps = 58/457 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALC-- 70
+AE LM+ + YLVP G P+ GLIQDHV +G ++LRD F + ++ LVY +
Sbjct: 651 RAEVETLMDANINYLVPTSGRPIRGLIQDHVAAGVLVTLRDKFFDHSTFVQLVYNGVGPY 710
Query: 71 ----ILNTEIRTLP-PTIWKPMPLWTGKQVLSTVI-----INLTPKDKVIIRHGELLSGI 120
+ T +P P I P P+WTGKQ++S ++ ++ I G L G
Sbjct: 711 IQENVGITLAELIPIPAILMPRPMWTGKQLISVMVRFSSGLSAASDCGREIEGGITLKGT 770
Query: 121 -------LDKKQFGSTQY--GLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVW 171
D+ GS AV D+ V + EL++G + KKQ G++ H V+
Sbjct: 771 SQIQPSAFDRIPAGSCDAVRAKSGAVVDSTVMFANSELITGFMCKKQLGASNMSAPHHVY 830
Query: 172 DTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDI-LVRQERDRKRTKIINKARRLGTEA 230
+ +G L + ++ + L++ G +L + D+ LV +ER R ++ K +
Sbjct: 831 ELYGPHRTGQLFAAFGRVLLLALRKEGLSLAMDDMFLVDEER---RCDLLRKLDDI---- 883
Query: 231 ACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIE 290
AL +P D E ++ + YA+ I Q +P+ ++
Sbjct: 884 ---ALDVP---DEEATAAPMIADYAT---------------------KIQQEFVPQRMLV 916
Query: 291 PFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRA 350
PFP N+L M SGAKGS +N Q+S LGQ +G R M S +TLPSF E R+
Sbjct: 917 PFPKNHLLLMTISGAKGSNLNATQMSLQLGQQLFDGLRVKRMNSSKTLPSFFTNEKRARS 976
Query: 351 GGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTV 410
GF G F +GI+P E+ H MAGR+GLIDTAVKTSRSG+LQRCL+K LE L VH+D TV
Sbjct: 977 FGFAMGSFASGIRPAEYTIHAMAGRDGLIDTAVKTSRSGHLQRCLIKGLESLVVHWDRTV 1036
Query: 411 RDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNI 447
RDS+ S+IQ +YG DGLD K LT + ++DN+
Sbjct: 1037 RDSNGSVIQFMYGGDGLDPCKASTLT--AWEMMKDNV 1071
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 64/105 (60%), Gaps = 2/105 (1%)
Query: 561 DMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILM 620
D+ + L +L PGE VG+LAAQ+ GEPSTQMTLNTFH AG +VT GIPRLRE+L+
Sbjct: 1183 DITARRRLWALCEPGEPVGLLAAQAAGEPSTQMTLNTFHTAGSTVSHVTEGIPRLRELLI 1242
Query: 621 MATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKV 665
A+ + ++ +P + EK ++ ++ + D L KV
Sbjct: 1243 YAS--VNKAAVVVPVTNATEEDEKVIAKMLRAGVAAKLTDCLAKV 1285
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+ L++ DI M + +GIE+ + E+ +F Y VDPRHLSL+AD TH G +
Sbjct: 1646 IKLHQACSTDIRDMGTYFGIESGYAALYDELNKLFNRY--NVDPRHLSLIADTSTHRGRW 1703
Query: 946 VAMNRNG-IRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
N G I + S + +MTF + +A +G D L + S+ +M+G+ R GT
Sbjct: 1704 ENFNFTGVISTSASPLFQMTFASSKRWLHRAVSRGMSDDLESFSSAIMVGERPRVGTASV 1763
Query: 1005 QL 1006
+L
Sbjct: 1764 RL 1765
>gi|145509313|ref|XP_001440599.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124407819|emb|CAK73202.1| unnamed protein product [Paramecium tetraurelia]
Length = 1353
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 201/644 (31%), Positives = 301/644 (46%), Gaps = 118/644 (18%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
++EA LM+V K G L L+QD + + ++ +D F +R ++M A
Sbjct: 480 RSEALILMDVKKNLKTIKSGESLVCLLQDFLTTAWLITNKDVFYSREQFMQFC-AAFSDS 538
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N +I PTI KP LWTGKQV++ +++ P K ++ L K+ + +
Sbjct: 539 NEQIDLPAPTILKPKQLWTGKQVINALLV---PNRKTRLKVTHL------KESWTICGWT 589
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
LV A V EL+ G + KK G+++ GL +A+ + + A S++ AKL +
Sbjct: 590 LVMA----SVVFDKCELVCGNIGKKVLGASKLGLFYALIRDNSTQIAASVMQRFAKLSSR 645
Query: 193 YLQRVGFTLGVRDIL--------VRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPE 244
++ G T+G+ D++ + Q ++ + + R L +D DP
Sbjct: 646 WISHYGMTIGIGDVMAPKSLIEQIHQSTEQSYLQCKHYQRSL------------IDADPG 693
Query: 245 IISSQLQEAYA--SIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
+ Q EA ++ R Q+ + + L N + M
Sbjct: 694 LTVEQTLEAKVNKTLSDVREQVGSKCQEQLKS-------------------DNKVLIMYL 734
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
GAKGS VN Q+ +GQ + GKR +GRTLP F Y + P+A GFV F TG+
Sbjct: 735 CGAKGSNVNVAQMIGCVGQQVISGKRVPEGFTGRTLPHFKDYILHPKAKGFVKNSFYTGM 794
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDL-SLIQVL 421
EF+FH MAGREGL DTAVKT+ +GY+QR LVK LE L + YD+TVR D ++Q
Sbjct: 795 DAIEFYFHNMAGREGLTDTAVKTATTGYMQRRLVKMLEDLHIAYDLTVRSCDTKEIVQFR 854
Query: 422 YGEDGLD---------VTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLL 472
YGEDGLD V K Q L F+ L N +++LN K+H L L
Sbjct: 855 YGEDGLDPLAVEDANEVIKLQNLLTNSFTVLRKN-------QILLN--KEHMLIKLDELF 905
Query: 473 LTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHF 532
+ I KF LE + +K +K+ + FK+ Q
Sbjct: 906 M----------IIEERHKKF----LENYEATYEKEKKRVQALFKSTNQ------------ 939
Query: 533 GSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQ 592
+SE ++ S +++F M+ PG +VG + +QSIGEP+TQ
Sbjct: 940 -QVSEKQLQWFIR--------SWMERFLTMVM--------APGTSVGPITSQSIGEPATQ 982
Query: 593 MTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFL 636
MTL TFH AG M++T G+PRL EI+ A+K IKTP + + +
Sbjct: 983 MTLKTFHSAGVAGMSITQGVPRLNEII-NASKEIKTPQINVKLI 1025
Score = 82.8 bits (203), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 68/122 (55%), Gaps = 1/122 (0%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D + N I + S GIEAA + I+ EV + I +D RH+ L+A+ MT G
Sbjct: 1208 IDWKRTVSNHIMEIQSALGIEAARQSIVNEVYTTMQSHSISIDIRHILLLAELMTFKGRI 1267
Query: 946 VAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
+ R GI +L S + +FE ++ A++QG++DS+ S RV++GQ QGTG+F
Sbjct: 1268 LGFTRQGIDQLKNSALMLASFEKTMDVFFNAAIQGKQDSMNGASQRVIIGQNVPQGTGMF 1327
Query: 1005 QL 1006
L
Sbjct: 1328 DL 1329
>gi|453086139|gb|EMF14181.1| DNA-directed RNA polymerase III subunit RPC1 [Mycosphaerella
populorum SO2202]
Length = 1484
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 208/678 (30%), Positives = 322/678 (47%), Gaps = 73/678 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLV---YQAL 69
+ EA+ LM V + PK+GSP+ IQD + +S +D F +R + ++V Y A+
Sbjct: 536 RTEATELMGVKNNLSTPKNGSPIIAAIQDFITGAYLISQKDRFFSRRHFTHVVGFMYNAM 595
Query: 70 CILNT------EIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDK 123
+ I PP IWKP LWTGKQ+ + ++I P V + L
Sbjct: 596 QAKDPYTGKEYPIVIPPPAIWKPQALWTGKQIWN-LLIKPHPDYPVNVNLEARL------ 648
Query: 124 KQFGS-TQYGLVHAVWDT--HVTIRHGELLSGILDKKQFGSTQY-GLVHAVWDTHGAEHA 179
KQ+ T+ + + DT ++ IR+ E++ G DK G + L + + GA++A
Sbjct: 649 KQYAPPTRPNDIPDMVDTDSYLVIRNSEVMCGGFDKATIGDGKKDSLFYVIMRDFGADYA 708
Query: 180 ISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPL 239
+ ++ LAKL +L GF++G+ D+ ++ +++ ++ A R C+ +
Sbjct: 709 AAAMTRLAKLSARWLGEQGFSIGISDVYPSEKLTKRKLNLVETAYR-----KCDEIIHKF 763
Query: 240 DTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQF 299
T S+ E ++ + +L + + + Q C E N
Sbjct: 764 KTGKLERSAGCDE------------EQTMEIMLSGILSKVRQECGDACFAELSKYNAPMT 811
Query: 300 MVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFM 359
M + G+KGS +N Q+ ++GQ + GKR RTLP FL P A GFV F
Sbjct: 812 MAKCGSKGSNINVSQMVAVVGQQIIGGKRVLEGFQDRTLPHFLKASPDPLAKGFVFDSFF 871
Query: 360 TGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQ 419
+G+ P EF FH M+GREGL+DTAVKT+ +GY+ R L+K LE L+ YD+TVR+S ++Q
Sbjct: 872 SGLTPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSAQYDLTVRNSSGGIVQ 931
Query: 420 VLYGEDGLDVT-----KRQYLTDKQFSFLEDNIKW----ICSYKVILNLLKKHPLSLALL 470
+ +G+DGLD + D+ +S ++ W C K + L+
Sbjct: 932 MKFGDDGLDPVDMEGNAKPINMDRTWSHSVEST-WDNSEACLTKDEIETYTHTVLNKERA 990
Query: 471 LLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQ-LDDKARKKYRKKFKACPQPLISTFQPD 529
L + G+ ++ R K T D LE Q LDD + K K
Sbjct: 991 KLGRYTDDGQA-LEYADERAKST-DQLEYSRQFLDDVTNYVFTKTKK----------MTR 1038
Query: 530 AHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEP 589
+H E LA+S + R S + F + K S G VG + AQSIGEP
Sbjct: 1039 SH-----EKLANSDAVF---RITQSALQTFLHLCMLKFEKSKVEAGHAVGAVGAQSIGEP 1090
Query: 590 STQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRL 649
TQMTL TFHFAG M++T G+PR++EI+ A+K I TP + D P E A R
Sbjct: 1091 GTQMTLKTFHFAGVAGMSITQGVPRIKEII-NASKVISTPVITCHL--DSP-YEDMAARF 1146
Query: 650 AKS-MTRITMADVLEKVK 666
AK+ M + + D+++ V+
Sbjct: 1147 AKALMEKTYLGDIVDYVE 1164
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 77/153 (50%), Gaps = 16/153 (10%)
Query: 856 PSNLFEEKES-KHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIR 914
P ++F E K + TDG+ D + N++ GIEAA + II
Sbjct: 1292 PISVFVEGYGLKQCMTTDGV------------DGYRTKSNNVMECRDVLGIEAARKTIID 1339
Query: 915 EVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIR 973
E+ V +++DPRH+ L+AD MT+ G + + R G+ ++ S +Q +FE + +
Sbjct: 1340 EIDAVMG--SMDIDPRHMQLLADVMTYKGEVLGITRFGLAKMRDSVLQLASFEKTPDHLF 1397
Query: 974 QASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+A+ + ++D + S +++GQ GTG ++
Sbjct: 1398 EAAAKMKKDDIEGVSECIIMGQSMSVGTGAMKV 1430
>gi|133316|sp|P16355.1|RPA1_TRYBB RecName: Full=DNA-directed RNA polymerase I subunit RPA1;
Short=TbRPA1; AltName: Full=DNA-directed RNA polymerase I
largest subunit
gi|10522|emb|CAA32572.1| unnamed protein product [Trypanosoma brucei]
Length = 1744
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 165/457 (36%), Positives = 238/457 (52%), Gaps = 58/457 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALC-- 70
+AE LM+ + YLVP G P+ GLIQDHV +G ++LRD F + ++ LVY +
Sbjct: 614 RAEVETLMDANINYLVPTSGRPIRGLIQDHVAAGVLVTLRDKFFDHSTFVQLVYNGVGPY 673
Query: 71 ----ILNTEIRTLP-PTIWKPMPLWTGKQVLSTVI-----INLTPKDKVIIRHGELLSGI 120
+ T +P P I P P+WTGKQ++S ++ ++ I G L G
Sbjct: 674 IQENVGITLAELIPIPAILMPRPMWTGKQLISVMVRFSSGLSAASDCGREIEGGITLKGT 733
Query: 121 -------LDKKQFGSTQY--GLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVW 171
D+ GS AV D+ V + EL++G + KKQ G++ H V+
Sbjct: 734 SQIQPSAFDRIPAGSCDAVRAKSGAVVDSTVMFANSELITGFMCKKQLGASNMSAPHHVY 793
Query: 172 DTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDI-LVRQERDRKRTKIINKARRLGTEA 230
+ +G L + ++ + L++ G +L + D+ LV +ER R ++ K +
Sbjct: 794 ELYGPHRTGQLFAAFGRVLLLALRKEGLSLAMDDMFLVDEER---RCDLLRKLDDI---- 846
Query: 231 ACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIE 290
AL +P D E ++ + YA+ I Q +P+ ++
Sbjct: 847 ---ALDVP---DEEATAAPMIADYAT---------------------KIQQEFVPQRMLV 879
Query: 291 PFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRA 350
PFP N+L M SGAKGS +N Q+S LGQ +G R M S +TLPSF E R+
Sbjct: 880 PFPKNHLLLMTISGAKGSNLNATQMSLQLGQQLFDGLRVKRMNSSKTLPSFFTNEKRARS 939
Query: 351 GGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTV 410
GF G F +GI+P E+ H MAGR+GLIDTAVKTSRSG+LQRCL+K LE L VH+D TV
Sbjct: 940 FGFAMGSFASGIRPAEYTIHAMAGRDGLIDTAVKTSRSGHLQRCLIKGLESLVVHWDRTV 999
Query: 411 RDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNI 447
RDS+ S+IQ +YG DGLD K LT + ++DN+
Sbjct: 1000 RDSNGSVIQFMYGGDGLDPCKASTLT--AWEMMKDNV 1034
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 64/105 (60%), Gaps = 2/105 (1%)
Query: 561 DMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILM 620
D+ + L +L PGE VG+LAAQ+ GEPSTQMTLNTFH AG +VT GIPRLRE+L+
Sbjct: 1146 DITARRRLWALCEPGEPVGLLAAQAAGEPSTQMTLNTFHTAGSTVSHVTEGIPRLRELLI 1205
Query: 621 MATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKV 665
A+ + ++ +P + EK ++ ++ + D L KV
Sbjct: 1206 YAS--VNKAAVVVPVTNATEEDEKVIAKMLRAGVAAKLTDCLAKV 1248
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+ L++ DI M + +GIE+ + E+ +F Y VDPRHLSL+AD TH G +
Sbjct: 1609 IKLHQACSTDIRDMGTYFGIESGYAALYDELNKLFNRY--NVDPRHLSLIADTSTHRGRW 1666
Query: 946 VAMNRNG-IRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
N G I + S + +MTF + +A +G D L + S+ +M+G+ R GT
Sbjct: 1667 ENFNFTGVISTSASPLFQMTFASSKRWLHRAVSRGMSDDLESFSSAIMVGERPRVGTASV 1726
Query: 1005 QL 1006
+L
Sbjct: 1727 RL 1728
>gi|71033377|ref|XP_766330.1| RNA polymerase large subunit [Theileria parva strain Muguga]
gi|68353287|gb|EAN34047.1| RNA polymerase large subunit, putative [Theileria parva]
Length = 1996
Score = 254 bits (649), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 163/453 (35%), Positives = 233/453 (51%), Gaps = 78/453 (17%)
Query: 262 AQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQ 321
+ DR +++ + V+++IN+ L + + FP N MV +GAKGS VN ISC L Q
Sbjct: 1148 STFDRFFQNNIVSVSSHINE--LVDNTVVKFPRNGFATMVSTGAKGSKVNFAMISCALSQ 1205
Query: 322 IELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDT 381
LEGKR +M S RTLP F + RAGGF+ RF+TG++PQE+FFHCM+GREGL+DT
Sbjct: 1206 QTLEGKRVPVMPSVRTLPCFAFGDFGSRAGGFISDRFLTGLRPQEYFFHCMSGREGLVDT 1265
Query: 382 AVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFS 441
VKT++SGYLQRC++K +E + V YD TVRDS+ ++IQ YGEDG+DV K YL+ Q
Sbjct: 1266 CVKTAKSGYLQRCVLKAMEDVIVCYDSTVRDSNCNIIQFKYGEDGIDVCKSSYLSQLQDL 1325
Query: 442 FLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWY 501
+ + +W P +L S P+ +M+L E+
Sbjct: 1326 QVNEIYQW-----------SNDPKNL---------KSSDPD----------SMELDEKED 1355
Query: 502 QLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYD 561
LD+ AR R + G+ Y K S+ +Y+
Sbjct: 1356 GLDNGARLYLR----------------NCETGT-----------YNKSSETDSNFKAYYE 1388
Query: 562 MIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMM 621
PGE VG +A QSIGEP+TQMTLNTFH AG G NVTLGIPRL EIL
Sbjct: 1389 KC-------KCEPGEAVGCIAGQSIGEPATQMTLNTFHLAGHGAANVTLGIPRLIEIL-Q 1440
Query: 622 ATKAIKTPSMEIPFL-PDMPKLEKKANRLAKSMTRITMADVLEKVKIKE--WLEISPEPH 678
T TP +P L + ++ + A ++ I ++D+++ V ++ ++ + E
Sbjct: 1441 NTSHCSTPYFSVPILGKNEDEIAENAENAINALRMIYLSDIVQSVGMETSVYVNKNSEKE 1500
Query: 679 MNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERK 711
Y F +++R K+I HF +
Sbjct: 1501 WEYVATIQFDDFNLFR--------KVIGHFNTR 1525
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/285 (29%), Positives = 130/285 (45%), Gaps = 55/285 (19%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVY------ 66
++EA + N Q++VPK+G P+ GLIQDH GA L+ RDTF T++E+ NLVY
Sbjct: 675 QSEAQLIANADCQFVVPKNGQPIRGLIQDHCQGGALLTSRDTFFTKSEFFNLVYLSFNSF 734
Query: 67 -------------------------------QALCIL-----------NTEIRTLPPTIW 84
+ L +L N +I P I
Sbjct: 735 ISTNSLMYLSKQDLHFVEEDIKLDVQLHQLAKRLKVLSDPFSRKITNRNIKIHLDQPAIL 794
Query: 85 KPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLS-----GILDKKQFGSTQYGLVHA--V 137
P L+TGKQV++ V+ L V + GE + + K Q +G +
Sbjct: 795 YPKQLYTGKQVITCVLKTLIDNISVGLGDGEENNKYRGINLQSKSQTPGDAWGGSYDGDK 854
Query: 138 WDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRV 197
++ + IR+ ELL G+LDK QFG++ YGL H +++ G LL+ + LFT +LQ
Sbjct: 855 EESTIIIRNSELLQGVLDKSQFGASSYGLTHLIYELLGPRVCGMLLNSFSYLFTSFLQMR 914
Query: 198 GFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTD 242
G T +D L+ + + +R KI+ + + G + L +TD
Sbjct: 915 GATCSPKDFLLTETAESERNKILKRIKYTGLHLQELFISLSRNTD 959
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 91/147 (61%), Gaps = 2/147 (1%)
Query: 861 EEKESKHLLKTDGINVNFISQYRH-LLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNV 919
++KE ++ L DG N+ + + ++D N + +ND+ + YGIEAA I+ E++ V
Sbjct: 1828 DDKE-EYTLHCDGTNLKRLFMLKDGIVDFNLIKMNDVATVLKYYGIEAARSCIVSELQKV 1886
Query: 920 FAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQG 979
F+VYGI+V+ RHL+L+AD+MT G R G+ + S + +M+FE ++ + QAS +G
Sbjct: 1887 FSVYGIKVNYRHLTLIADFMTQKGDVRTFTRYGMAKHTSPLLQMSFESTMKFLMQASQRG 1946
Query: 980 REDSLRAPSARVMLGQECRQGTGLFQL 1006
D+L++P+ +M G+ G+ L +L
Sbjct: 1947 AYDNLKSPAGGLMAGKPVHVGSSLCRL 1973
>gi|357138371|ref|XP_003570766.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Brachypodium distachyon]
Length = 1400
Score = 254 bits (649), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 215/676 (31%), Positives = 313/676 (46%), Gaps = 76/676 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+ EA LM V S PK+G L QD + S ++ +DTF R+ Y L+ L
Sbjct: 509 RTEAFLLMGVQSNLCTPKNGEILVASTQDFLTSSFLVTRKDTFYDRS-YFTLLCSYLGDA 567
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLST---------VIINLTPKDKVIIRHGELLSGILDK 123
I P I KP+ LWTGKQ+ S V +NLT ++KV I+H E DK
Sbjct: 568 MENIDLPTPAIIKPVELWTGKQLFSVLVRPNACTKVFLNLTVEEKVYIKHKER-----DK 622
Query: 124 KQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISL 182
K + + D V R+ ELLSG L KK G+ + G+ + + + A S
Sbjct: 623 KAITVLEETMCPN--DGFVYFRNSELLSGQLGKKTLGNGNKEGMFSVLLRDYNSHAAASC 680
Query: 183 LSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTD 242
++ LAK ++ GF++GV D+ Q ++K+ II++ G E CN L + L +
Sbjct: 681 MNRLAKFSARFIGNHGFSIGVDDVQPGQSLNKKKKVIIDE----GYEE-CNKL-IALYSK 734
Query: 243 PEIISSQLQEAYASIPQFRAQ-IDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMV 301
+ + Q + RAQ ++ Q +L+K+ C+ P M
Sbjct: 735 GHL---KPQPGCS-----RAQTLESQISCVLNKLRETAGDDCMSTLHWRNSPL----IMS 782
Query: 302 ESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTG 361
+ G+KGS +N Q+ +GQ + G R RTLP F +P A GFV F TG
Sbjct: 783 QCGSKGSPINISQMVVCVGQQSVGGCRAPNGFIDRTLPHFPINSKTPAAKGFVANSFYTG 842
Query: 362 IQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVL 421
+ EFFFH M GREGL+DTAVKT+ +GYL R L+K LE L+V YD TVR++ ++Q +
Sbjct: 843 LTASEFFFHTMGGREGLVDTAVKTADTGYLSRRLMKGLEDLSVFYDQTVRNASGGIVQFV 902
Query: 422 YGEDGLDVTKRQYLTDKQFSF--LEDNIKWIC--------SYKVILNLLKKHPLSLALLL 471
YG+DG+D K + + L +K C S VIL + L
Sbjct: 903 YGDDGMDPVKMEGKGGSPLNLDQLFMKVKATCPQRGHDTLSPDVILQMFND-------TL 955
Query: 472 LLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAH 531
SSG+ + TKF L+D+ K R +A + H
Sbjct: 956 FKQETSSGRCSDKLKEMLTKF----------LEDRV-KMLRSTRRA-------LHIDEDH 997
Query: 532 FGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPST 591
G ++ + + G A + F D F + + G +VG + A SIGEP T
Sbjct: 998 VGRRDSSVEECIAADISG-ISAKQLQVFLDTCFSRYHSKIIEAGASVGPIGAHSIGEPGT 1056
Query: 592 QMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAK 651
QMTL TFHFAG MNVTLG+PR++EI+ A K TP + L K A ++
Sbjct: 1057 QMTLKTFHFAGVASMNVTLGVPRIKEII-NAAKKTSTPIITTELLSGQDK--SFAVKVKS 1113
Query: 652 SMTRITMADVLEKVKI 667
S+ ++ + +V + I
Sbjct: 1114 SIEKVVLGEVAAAINI 1129
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 68/125 (54%), Gaps = 1/125 (0%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D K N I ++ T GIEAA R II E++ F + +D RH+ L+AD MT G
Sbjct: 1259 VDAKKTKSNHIMEVSQTLGIEAARRSIIDEIRYTFENNNMMIDLRHMMLLADVMTSKGEV 1318
Query: 946 VAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
+ M +GI ++ S + +FE ++ + AS GR D + S V++G + GTG+
Sbjct: 1319 LPMTAHGIAKMKTSVLMLASFERTMDHLFNASYAGRVDEIEGVSECVIMGMPMKPGTGIL 1378
Query: 1005 QLRNR 1009
+++ R
Sbjct: 1379 KVKQR 1383
>gi|261330566|emb|CBH13550.1| DNA-directed rna polymerase I largest subunit,putative [Trypanosoma
brucei gambiense DAL972]
Length = 1781
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 165/457 (36%), Positives = 237/457 (51%), Gaps = 58/457 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALC-- 70
+AE LM+ + YLVP G P+ GLIQDHV +G ++LRD F + ++ LVY +
Sbjct: 651 RAEVETLMDANINYLVPTSGRPIRGLIQDHVAAGVLVTLRDKFFDHSTFVQLVYNGVGPY 710
Query: 71 ----ILNTEIRTLP-PTIWKPMPLWTGKQVLSTVI-----INLTPKDKVIIRHGELLSGI 120
+ T +P P I P P+WTGKQ++S ++ ++ I G L G
Sbjct: 711 IQENVGITLAELIPIPAILMPRPMWTGKQLISVMVRFSSGLSAASDCGREIEGGITLKGT 770
Query: 121 -------LDKKQFGSTQY--GLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVW 171
D+ GS AV D+ V + EL++G + KKQ G++ H V+
Sbjct: 771 SQIQPSAFDRIPAGSCDAVRAKSGAVVDSTVMFANSELITGFMCKKQLGASNMSAPHHVY 830
Query: 172 DTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDI-LVRQERDRKRTKIINKARRLGTEA 230
+ +G L + ++ + L++ G +L + D+ LV +ER R ++ K +
Sbjct: 831 ELYGPHRTGQLFAAFGRVLLLALRKEGLSLAMDDMFLVDEER---RCDLLRKLDDI---- 883
Query: 231 ACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIE 290
AL +P D E ++ + YA+ I Q +P ++
Sbjct: 884 ---ALDVP---DEEATAAPMIADYAT---------------------KIQQEFVPHRMLV 916
Query: 291 PFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRA 350
PFP N+L M SGAKGS +N Q+S LGQ +G R M S +TLPSF E R+
Sbjct: 917 PFPKNHLLLMTISGAKGSNLNATQMSLQLGQQLFDGLRVKRMNSSKTLPSFFTNEKRARS 976
Query: 351 GGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTV 410
GF G F +GI+P E+ H MAGR+GLIDTAVKTSRSG+LQRCL+K LE L VH+D TV
Sbjct: 977 FGFAMGSFASGIRPAEYTIHAMAGRDGLIDTAVKTSRSGHLQRCLIKGLESLVVHWDRTV 1036
Query: 411 RDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNI 447
RDS+ S+IQ +YG DGLD K LT + ++DN+
Sbjct: 1037 RDSNGSVIQFMYGGDGLDPCKASTLT--AWEMMKDNV 1071
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 64/105 (60%), Gaps = 2/105 (1%)
Query: 561 DMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILM 620
D+ + L +L PGE VG+LAAQ+ GEPSTQMTLNTFH AG +VT GIPRLRE+L+
Sbjct: 1183 DITARRRLWALCEPGEPVGLLAAQAAGEPSTQMTLNTFHTAGSTVSHVTEGIPRLRELLI 1242
Query: 621 MATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKV 665
A+ + ++ +P + EK ++ ++ + D L KV
Sbjct: 1243 YAS--VNKAAVVVPVTNATEEDEKVIAKMLRAGVAAKLTDCLAKV 1285
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+ L++ DI M + +GIE+ + E+ +F Y VDPRHLSL+AD TH G +
Sbjct: 1646 IKLHQACSTDIRDMGTYFGIESGYAALYDELNKLFNRY--NVDPRHLSLIADTSTHRGRW 1703
Query: 946 VAMNRNG-IRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
N G I + S + +MTF + +A +G D L + S+ +M+G+ R GT
Sbjct: 1704 ENFNFTGVISTSASPLFQMTFASSKRWLHRAVSRGMSDDLESFSSAIMVGERPRVGTASV 1763
Query: 1005 QL 1006
+L
Sbjct: 1764 RL 1765
>gi|168009054|ref|XP_001757221.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691719|gb|EDQ78080.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1397
Score = 253 bits (647), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 210/679 (30%), Positives = 314/679 (46%), Gaps = 89/679 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMN-LVYQALCI 71
+ EA LM V++ PK+G L QD + S + +DTF RA + VY
Sbjct: 523 RTEALMLMGVANNLCTPKNGEILVASTQDFLTSSYLFTRKDTFYDRATFTQACVYMGDAA 582
Query: 72 LNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQY 131
N ++ T P+I KPM LWTGKQ+ S V++ K +V + K GS
Sbjct: 583 ENIDLPT--PSIIKPMELWTGKQLFS-VLVRPNAKTRVFVNLVSYEKNYDKKANKGSM-- 637
Query: 132 GLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKLF 190
D +V R+ EL+ G L K G+ + GL + +G E A ++ LAKL
Sbjct: 638 ----CPTDGYVYFRNSELICGQLGKATLGNGNKDGLFTVLLRDYGNEAAAVCMNRLAKLS 693
Query: 191 TVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL----PLDTDPEII 246
++ GF++G+ D+ +R++ K I K G A + L L+ P
Sbjct: 694 ARWIGNHGFSIGIDDVAPSDRLNREKEKQITK----GYNACDQHIQLYKKGKLELQPGCN 749
Query: 247 SSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAK 306
++Q E+ + L+K+ VC E N+ M E G+K
Sbjct: 750 AAQTLESAVT-------------GELNKIREAAGNVCKDELHWR----NSPLIMSECGSK 792
Query: 307 GSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQE 366
GS +N Q+ +GQ + GKR RTLP F ++ +P+ GFV F +G+ E
Sbjct: 793 GSFINISQMVACVGQQSVGGKRAPNGFIDRTLPHFPRHDRTPQGKGFVANSFYSGLSATE 852
Query: 367 FFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDG 426
FFFH M GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR+S ++Q+LYG+DG
Sbjct: 853 FFFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSAQYDGTVRNSSGGIVQLLYGDDG 912
Query: 427 LDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLT------FKSSGK 480
+D Y+ K + P +L +L+ T + G
Sbjct: 913 MDPV---YMEGKDGA----------------------PFNLDRMLMKTKATCPSYGQLGL 947
Query: 481 P----NFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQ----PDAHF 532
P +F+ TK D+ + + KK+ +C + IST P
Sbjct: 948 PPTEIEKLFNERLTK--PDMTSETVGAFKTSLKKF---MDSCIKDNISTRTKLGLPLDCN 1002
Query: 533 GSISENLADSVVKYTKGRT----DASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGE 588
G + L +S Y G T + + F D + + PG VG + AQSIGE
Sbjct: 1003 GGPDQTLLESTATYISGLTSRQLEICLLQVFLDTCIKRYHMKRVEPGAAVGAVGAQSIGE 1062
Query: 589 PSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANR 648
P TQMTL TFHFAG MN+TLG+PR++EI+ A+K I TP + + ++KA R
Sbjct: 1063 PGTQMTLKTFHFAGVASMNITLGVPRIKEII-NASKNISTPIITAVLVSGN---DEKAAR 1118
Query: 649 LAKS-MTRITMADVLEKVK 666
+ K + + T+ +V + +K
Sbjct: 1119 IVKGRIEKTTLGEVAKSIK 1137
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 67/116 (57%), Gaps = 1/116 (0%)
Query: 902 TYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFI 960
T GIEAA VII E++ +G+ +D RH+ L+AD MT+ G + + R GI ++ S +
Sbjct: 1273 TLGIEAARNVIIDEIQYTMGSHGMTIDARHMMLLADVMTYKGEVLGITRFGIAKMKDSVL 1332
Query: 961 QKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNREKKKKKV 1016
+FE + + A++ GR D + S +++G GTGLF++R + +K K+
Sbjct: 1333 MLASFEKTTDHLFDAAIHGRVDKIEGVSECIIMGIPMPIGTGLFKIRQKVEKLPKL 1388
>gi|355712695|gb|AES04435.1| polymerase I polypeptide A, 194kDa [Mustela putorius furo]
Length = 381
Score = 252 bits (644), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 145/374 (38%), Positives = 210/374 (56%), Gaps = 46/374 (12%)
Query: 393 RCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICS 452
RC++KHLEGL V YD+TVRDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I
Sbjct: 1 RCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMK 60
Query: 453 YKVILNLLKKHPLSLALLLLLTFK--SSGKPNFIFSPH---------------------- 488
K + +L + AL K S PN +
Sbjct: 61 SKHLQEVLSRADPQKALRHFRAIKKWQSKHPNTLLRKGAFLSYSQKIQAAVKALNLEGGN 120
Query: 489 ---RTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVK 545
R+ T +L+ W +LD+++R+KY+KK CP P ++ ++PD +F S+SE +
Sbjct: 121 QNGRSLGTHQILKMWNELDEQSRRKYQKKAAPCPDPSLAVWRPDIYFASVSETFEKKMDD 180
Query: 546 YTKGRTDASHVDKFYD--------------MIFYKNLLSLANPGENVGVLAAQSIGEPST 591
Y+ AS +K Y+ + + ++L +PGE VG+LAAQSIGEPST
Sbjct: 181 YSVEW--ASQAEKSYEKSELSLDRLRTLLQLKWQRSLCDPGDPGEAVGLLAAQSIGEPST 238
Query: 592 QMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAK 651
QMTLNTFHFAGRG+MNVTLGIPRLREILM+A+ IKTP M +P + K K+ L K
Sbjct: 239 QMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVF-NTKKALKRVKSLKK 297
Query: 652 SMTRITMADVLEKVKIKEWLEISP--EPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFE 709
+TR+ + +VLEK+ ++E + + Y+++F F+P Y+ + ++P I+ E
Sbjct: 298 QLTRVCLGEVLEKIDVQESFCVGDKHDKFQVYRLRFHFLPHAYYQQEKCLRPEDILHFME 357
Query: 710 RKFLKELEVAIAKR 723
+F K L ++ K+
Sbjct: 358 TRFFKILMESLRKK 371
>gi|313240928|emb|CBY33212.1| unnamed protein product [Oikopleura dioica]
Length = 863
Score = 252 bits (644), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 130/310 (41%), Positives = 190/310 (61%), Gaps = 21/310 (6%)
Query: 139 DTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRV- 197
D+ V I++G + SG LDK Q GS +Y ++ A+ + G ++ + + YL+
Sbjct: 3 DSEVVIKNGYVCSGYLDKDQIGSAKYSILAAIEEIFGGPTVGKFITAVTYCLSHYLKCYR 62
Query: 198 GFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQEAYASI 257
GFTLG+RD++ ++ +KR KI+ + G AA A +++ A+
Sbjct: 63 GFTLGIRDVVTSRKIAKKRRKIV----KTGDYAAVRA--------------KIRHAHLVG 104
Query: 258 PQFRA-QIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQIS 316
+F ++D K + VT I+++C P L E FP NNL+ ++ +GAKGS N + ++
Sbjct: 105 TEFTMHEVDAICKKAANSVTEAIHRLCEP-NLEEKFPRNNLETLIVTGAKGSKANLLNMA 163
Query: 317 CLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGRE 376
LGQ+E +GKRP +M SGR P + PYE R+G F+ R+ G++PQE FFH MAGR+
Sbjct: 164 SNLGQVEFDGKRPKIMASGRCFPCWKPYEHDIRSGAFISHRYAGGLRPQEMFFHVMAGRD 223
Query: 377 GLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLT 436
GLIDTA KTS SGYLQRCL+KHLEG+TV YD TVRD D S++Q +GEDG+DV K Y+
Sbjct: 224 GLIDTACKTSSSGYLQRCLIKHLEGITVSYDRTVRDHDQSVVQFQFGEDGIDVAKTPYMK 283
Query: 437 DKQFSFLEDN 446
QF F+++N
Sbjct: 284 PHQFDFIKEN 293
Score = 207 bits (527), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 158/502 (31%), Positives = 239/502 (47%), Gaps = 79/502 (15%)
Query: 561 DMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILM 620
++++ K SL PG+ +G++ AQSIGEPSTQMTLNTFH AG+ D+N+TLGIPRLRE+LM
Sbjct: 385 ELLYSKYRQSLMPPGDQIGLVIAQSIGEPSTQMTLNTFHMAGKADVNITLGIPRLRELLM 444
Query: 621 MATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWL-------EI 673
A +KTPSM IPF + E + + S+ I ++DVL VK + L I
Sbjct: 445 TAPTEVKTPSMTIPFHRHIK--EAQVEKFVNSLKNIRLSDVLTAVKGQNKLIVQDGSFVI 502
Query: 674 SPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERK-----FLKELEVAIAKRAAQGL 728
E + K C + + P ++ RK +K+LE A R+ Q L
Sbjct: 503 QSEIEIKIGRKLC--------KELDLDPETVVAEIMRKKLFKVVIKKLEDAEKARSKQEL 554
Query: 729 -KNMNIEQSRDQMEDDVEDDEGEGAEGAGAALG----RVDVSSDEERDEEDA-----VQS 778
+ N E ++ + GA AG G + D+E D ++
Sbjct: 555 FVSKNKEAAKPK----------RGARKAGNDDGDDPDACAIPDDKEEDIDECEYEDVDDE 604
Query: 779 HKKVNQEEDNDFEEPEDEERMSEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVH 838
K + + +DE + + E D ++ S+ F + V++ H V
Sbjct: 605 VKDEEDDAEEVDGNSDDESPLKQNETDQILK------ELNMTKSSGNFWEKVLSSHRSVT 658
Query: 839 KYSYDKKNHMWCKLLFL--PSN---------------------------LFEEKESK-HL 868
+D K W + F PS+ F++ E + H
Sbjct: 659 SVVHDAKKFSWILVTFNRDPSSENIDLVHIIESAVREISIQGIPKISKVTFKQSEDRTHF 718
Query: 869 -LKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 927
+ T+GIN +Y +LDLN++ ND++ + YGIEAA + RE+ VF YGI V
Sbjct: 719 EILTEGINFPGFYRYPEMLDLNRISTNDVNAFRNAYGIEAAVMTMQREIDKVFKPYGIAV 778
Query: 928 DPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAP 987
D RH SLVADY+T G Y A NR+G++ S IQKM++E + + + + G +D + +P
Sbjct: 779 DKRHTSLVADYVTQEGQYRAFNRHGLKTCASPIQKMSYETTTQFLIDSIVYGEDDDMSSP 838
Query: 988 SARVMLGQECRQGTGLFQLRNR 1009
+A V GQ + GTG F +R +
Sbjct: 839 AASVAAGQLFKGGTGYFDIRQQ 860
>gi|213410469|ref|XP_002176004.1| DNA-directed RNA polymerase III complex large subunit Rpc1
[Schizosaccharomyces japonicus yFS275]
gi|212004051|gb|EEB09711.1| DNA-directed RNA polymerase III complex large subunit Rpc1
[Schizosaccharomyces japonicus yFS275]
Length = 1406
Score = 252 bits (643), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 195/641 (30%), Positives = 300/641 (46%), Gaps = 78/641 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+ EA LM + + + P++G P+ QD + + LSL+D FL R + NL C +
Sbjct: 510 RTEALELMGIKNNLVTPRNGEPIIAATQDFITASYLLSLKDCFLDRKTFCNLC----CFM 565
Query: 73 ---NTEIRTLPPTIWKPMPLWTGKQV---------LSTVIINLTPKDKVIIRHGELLSGI 120
+ I PP I KP LWTGKQ+ LS V++NL + I + G
Sbjct: 566 VDASVHIDIPPPAILKPRCLWTGKQLFGVLMRPNHLSPVMVNLAANTRSIAK------GK 619
Query: 121 LDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFG-STQYGLVHAVWDTHGAEHA 179
+ D ++ I++ ELL+G++DK G + L + + +G A
Sbjct: 620 CSPPEMCPN---------DGYLLIQNSELLAGVVDKSIVGDGKKNSLFYVILRDYGPIEA 670
Query: 180 ISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPL 239
+ ++ LAKL YL GF++G+ D+ Q + ++ KA + + L
Sbjct: 671 AATMNRLAKLCARYLGNRGFSIGINDVQPGQRLYHTKEALVEKAYSVSDDLIMQYAKGTL 730
Query: 240 DTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQF 299
+ P + A ++ + S L KV +++ + C+ E P
Sbjct: 731 ECQPGM-------------NQEATLESKISSTLSKVRDDVGETCMKELGSRNAPL----I 773
Query: 300 MVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFM 359
M G+KGS +N Q+ +GQ + GKR R+LP F P A GFV F
Sbjct: 774 MATCGSKGSKINVSQMVACVGQQIISGKRVPDGFQDRSLPHFRKNSKHPLAKGFVSNSFY 833
Query: 360 TGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQ 419
TG+ P EF FH ++GREGL+DTAVKT+ +GY+ R L+K LE LT YD TVR S+ S++Q
Sbjct: 834 TGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLTSAYDGTVRSSNSSIVQ 893
Query: 420 VLYGEDGLDVT-----------KRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLA 468
YG+DGLD T +R + ++ ED+ + YK+I + +
Sbjct: 894 FTYGDDGLDPTYLEGDGTPVAFERCWSHSSNITYNEDD-SGLLPYKIIEE-------TES 945
Query: 469 LLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQP 528
+L F ++ NFI S RT L ++ Q+ +A ++ K + + F+
Sbjct: 946 ILSSRKFTANCTENFIES-VRTFVIERLAKKLAQV--RANRQLAPKLERPSEDDFDDFEN 1002
Query: 529 DAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGE 588
D + D+V++ +K + F + K + + PG VG + A SIGE
Sbjct: 1003 DDFAPLAARKSVDNVLRVSK-----KQLYTFLQFCWEKYMKAKVEPGTAVGAVGAHSIGE 1057
Query: 589 PSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
P TQMTL TFHFAG TLG+PR++EI+ A K I TP
Sbjct: 1058 PGTQMTLKTFHFAGVA-AQTTLGVPRIKEII-NAAKTISTP 1096
Score = 70.1 bits (170), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 79/149 (53%), Gaps = 3/149 (2%)
Query: 859 LFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKN 918
+ +E E K L+ +G + + ++ +K + N + M + GIEAA + II E+ +
Sbjct: 1231 ILQEGEKKQLV-VEGYGLREVMNTEGIVG-SKTFTNHVMEMNAVLGIEAARQSIIYEIDS 1288
Query: 919 VFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASM 977
+G+ VDPRH+ L+ D MT G + + R G+ ++ S + +FE + + A+
Sbjct: 1289 TMRNHGLTVDPRHIMLLGDVMTCKGEVLGITRFGVAKMKDSVLSLASFEKTTDHLFDAAA 1348
Query: 978 QGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+ +DS+ S ++LG+ GT +FQL
Sbjct: 1349 RFAKDSIEGISECIVLGKLAPIGTNVFQL 1377
>gi|321260548|ref|XP_003194994.1| DNA-directed RNA polymerase III largest subunit [Cryptococcus gattii
WM276]
gi|317461466|gb|ADV23207.1| DNA-directed RNA polymerase III largest subunit, putative
[Cryptococcus gattii WM276]
Length = 1463
Score = 252 bits (643), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 194/675 (28%), Positives = 316/675 (46%), Gaps = 50/675 (7%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+ EA LM+V + P++G P+ IQD + + LS RD F R ++ + L
Sbjct: 527 RTEALELMSVKKNLVTPRNGEPIIAAIQDFITAAYLLSRRDRFYDRQQFTQIA-SYLGDA 585
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N +I PPTIWKP+ LWTGKQ+ + +++ + KV++ ++D + ++
Sbjct: 586 NLKIEMPPPTIWKPVRLWTGKQIFN-LLMRPNKESKVLVNLEAKCRTLVDPAK--EDRFP 642
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAV-WDTHGAEHAISLLSCLAKLFT 191
+ D ++ I++ E++ G+ DK G + V V +G E A ++ LAK+
Sbjct: 643 PDMSPNDGYLVIQNSEIMCGVFDKNTVGDGKKNSVFGVILRDYGPEEAAQAMNRLAKIAA 702
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQ 251
+L +GF+LG+ D++ I++ ++ E A + +D +L+
Sbjct: 703 RWLANIGFSLGINDVIP--------GPILHASKDARVEKAYGECDVFIDLAKR---GKLE 751
Query: 252 EAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVN 311
A + A ++ + L V + ++C+ E P M G+KGS +N
Sbjct: 752 NAPGCDQE--ATLESKISKTLSDVREAVGKICMQELSRHNAPL----IMATCGSKGSVIN 805
Query: 312 TMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHC 371
Q+ +GQ + G R R+LP F +P + GFV F +G+ P EF FH
Sbjct: 806 VAQMVACVGQQIIGGSRVRNGFQDRSLPHFRKKSKNPPSKGFVRNSFFSGLTPPEFLFHA 865
Query: 372 MAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL---- 427
M+GREGL+DTAVKT+ +GY+ R L+K LE L HYD++VR+S ++Q YG+D L
Sbjct: 866 MSGREGLVDTAVKTAETGYMARRLMKALEDLCTHYDLSVRNSVGGIVQFQYGDDMLDPAC 925
Query: 428 ---DVTKRQYLTDKQFSF--LEDNIKWICSYKVILNLLKKHPLSLALLLLLTF--KSSGK 480
D T +Y+ + + + + Y+V + +P S L K+ G+
Sbjct: 926 LEGDATPVEYVRSWTHACRTAGNQGRALFPYEVRRIAARIYPESFILPSPPPSPPKTKGR 985
Query: 481 PNFIFSPHRTKFTMDLLEQWYQLDDKARKK-YR----KKFKACPQPLISTFQPDAHFGSI 535
+P L ++W K R+ Y+ K K ++ PDA +
Sbjct: 986 RRKEPTPPPPVVAPALPKEWEGCHHKFRENTYKFVVDKIVKQMVDQRLARGLPDADDEEM 1045
Query: 536 SENL---------ADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSI 586
+E A V + + V+ F + + L + PG VG + AQSI
Sbjct: 1046 AEEYEALLYSDDPAVQRVLENANKVTEAQVNSFLENCRIRYLRAKIEPGSTVGAVGAQSI 1105
Query: 587 GEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKA 646
GEP TQMTL TFHFAG MNVTLG+PR++EI+ A K I TP + +P+ E A
Sbjct: 1106 GEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII-NAAKVISTPIIAAELA--IPESETAA 1162
Query: 647 NRLAKSMTRITMADV 661
+ + + + D+
Sbjct: 1163 RIVKGRIEKTVLGDI 1177
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 89/196 (45%), Gaps = 25/196 (12%)
Query: 803 EEDDNTSNIG--ERFKIEFRDSTNVFVKDV-VNQHNIVHKYSYDKKNHMWCKLLFLPSNL 859
+E D +G ER K R +V VK + + +V K D+KN +LL L
Sbjct: 1244 DESDKDKGVGIYERLKFLKRAIPSVQVKGLPAIERGVVTK---DEKNEKIHRLLVTGYGL 1300
Query: 860 FEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNV 919
E ++ T+G+ D K N + GIEAA I E++
Sbjct: 1301 SE------VMGTEGV------------DGLKTKTNHVMETQQVLGIEAARSTIYNEIQTT 1342
Query: 920 FAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQ 978
+G+ +DPRH+ L+ D MT+ G + + R G+ ++ S + +FE + + AS+
Sbjct: 1343 MKSHGMSIDPRHVMLLGDVMTYKGEVLGITRFGVQKMKDSVLMLASFEKTTDHLFDASLY 1402
Query: 979 GREDSLRAPSARVMLG 994
++D ++ S +++G
Sbjct: 1403 SKKDEIQGVSECIIMG 1418
>gi|120561237|gb|ABM27004.1| RNA polymerase II largest subunit, partial [Chytriomyces hyalinus]
Length = 960
Score = 252 bits (643), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 191/615 (31%), Positives = 295/615 (47%), Gaps = 81/615 (13%)
Query: 14 AEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCILN 73
AE L VSS + P+ P++GL+QD + KL++RDTF+ + M+LV +C+
Sbjct: 390 AELQTLSMVSSLLVSPQSNKPVNGLVQDALCGIRKLTMRDTFVNFEDMMDLV---MCLKE 446
Query: 74 TEIRTLPPTIWKPMPLWTGKQVLSTVI--INLTPKDKVIIRHGELLSGI---LDKKQFGS 128
+ PP I+KP+PLWTGKQ++S + I+LT H ++ L++
Sbjct: 447 FPV-IPPPAIFKPIPLWTGKQIISLCLPDIDLTGNTLTHADHEDIFRSTTKDLNETCTRK 505
Query: 129 TQYGLVHAV-WDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
+ A D+ V I+ G ++ G L KK G++ G+VH +++ HG A + +
Sbjct: 506 AESEFYSATPTDSRVLIQSGIIVHGYLCKKTVGASSGGIVHIIYNDHGPRAACDFIDNSS 565
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIIS 247
++ +L GF++G+ D LV +E +DT +
Sbjct: 566 RIVNAWLTNSGFSVGIGDALV-------------------SEITHAVFSSTIDTQLHKVQ 606
Query: 248 SQLQEAYASIPQFRAQID------RQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMV 301
++ +A+ + D Q LL K ++ + L G P NNL+ MV
Sbjct: 607 KTIESYHANELKPEGNFDCEQTKENQIVGLLAKARDSAGKTTLISG----HPDNNLKQMV 662
Query: 302 ESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTG 361
E+G+KGS +N Q+S +GQ +EGKR RTLP F Y+ SP A GFV F+ G
Sbjct: 663 EAGSKGSVLNICQVSACVGQQMVEGKRIPFGFKDRTLPHFTKYDHSPAARGFVRNSFVKG 722
Query: 362 IQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVL 421
+ P E FFH M GREGLIDTA+KT+ +GY+QR LVK LE +TV D TVR+S +IQ
Sbjct: 723 LTPSELFFHAMGGREGLIDTAIKTAETGYIQRRLVKALEDITVKSDGTVRNSRDDIIQFY 782
Query: 422 YGEDGLDVTKRQYLT-------------------DKQFSFLEDNIKWICSYKVILNLLK- 461
YGEDG D T +Y T D +++ L+ + + + + +L L +
Sbjct: 783 YGEDGFDGTAIEYQTFPTMMLSESELYSRYYNGIDSEYAQLKKDQELL---RRVLRLAED 839
Query: 462 KHPLSLALL-LLLTFK----SSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFK 516
+ PL L ++ +++T K + G P+ T+FT + + Q K +
Sbjct: 840 RWPLPLNIMRMIITVKKRAITRGLPD-------TEFTAEYIFQ-------QTKAVVNSLR 885
Query: 517 ACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGE 576
+ S + A FG + ++ S + D +I K L GE
Sbjct: 886 PSKLNINSEYNVSALFGILVSSILSSKQVLYVHKLSKCQFDYLLILIKEKYHRGLVQAGE 945
Query: 577 NVGVLAAQSIGEPST 591
+VGV+AAQSIGEP+T
Sbjct: 946 SVGVIAAQSIGEPAT 960
>gi|391343926|ref|XP_003746256.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit RPC1-like [Metaseiulus occidentalis]
Length = 1386
Score = 251 bits (640), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 205/692 (29%), Positives = 321/692 (46%), Gaps = 120/692 (17%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALC-- 70
+AEA LM ++ + P++G PL G IQD + G L+ +D R +L+ Q +
Sbjct: 516 RAEAMVLMATTANIVTPRNGEPLIGAIQDFITGGYLLTHKDEMFDRETACHLISQFVAGR 575
Query: 71 ILNTEIRTLPPTIWKPMPLWTGKQVLSTVI---------INLTPKDKVIIRHGELLSGIL 121
++T + P I KP LWTGKQ+ S ++ I+L K+K ++ ++ +
Sbjct: 576 DVSTTVELPHPAILKPKVLWTGKQIFSLILKPSKSSDVRIHLRAKNKNXTKNEDMCTN-- 633
Query: 122 DKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAI 180
D +V +R+ ELL G +DK GS ++ + + + + A+HA
Sbjct: 634 -----------------DNYVIMRNSELLCGRMDKGTMGSGSKNSIFYLLLRDYSAQHAA 676
Query: 181 SLLSCLAKLFTVYLQRV-GFTLGVRDI-----LVRQERDRKR---TKIINKARRL--GTE 229
+ LA++ +L GF++G+ D+ LV Q+R+ R ++ R+L GT
Sbjct: 677 DAMWRLARISAFFLLSTRGFSIGIGDVTPGASLVAQKRELVRVGYSRCQEYIRKLDQGT- 735
Query: 230 AACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDK----VTNNINQVCLP 285
L P Q EA ++ S+ DK T ++Q C P
Sbjct: 736 ---------LPAQPGCTEEQTLEALCL---------KELSSIRDKTGNICTEELHQTCSP 777
Query: 286 EGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYE 345
M G+KGS +N Q++ +GQ + G R R+LP F
Sbjct: 778 ------------LVMALCGSKGSFINISQMATCVGQQAISGHRVGNGFEDRSLPHFERKT 825
Query: 346 VSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVH 405
P A GFV+ F TG+ P EFFFH MAGREGL+DTAVKT+ +GY+QR L+K LE + ++
Sbjct: 826 KDPDARGFVEDSFFTGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLIKSLEDMMLN 885
Query: 406 YDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLK---K 462
YD +VR S +IQ YG D LD + + + + +L ++K +
Sbjct: 886 YDSSVRSSTGDVIQFEYGADSLDPA------------MIEGKDSVVDFNRVLEMVKASNR 933
Query: 463 HPLSLA----LLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKAC 518
+P +A L+ L+ + +P+F R M LLE ++ + R+ +RK
Sbjct: 934 YPDEIAEDPDTLIELSKQIVREPDFDRGVKRYFIDM-LLEYIERVAESNRESWRKLGVTK 992
Query: 519 PQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENV 578
P I +P R SH+ F K L + P +
Sbjct: 993 DSPKIFK-EP--------------------WRLTKSHLRDFIMTSKNKYLKAKLEPATAI 1031
Query: 579 GVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPD 638
G + AQSIGEP+TQMTL TFHFAG MN+T G+PR++EI+ A+KAI TP + L D
Sbjct: 1032 GAICAQSIGEPATQMTLKTFHFAGVASMNITQGVPRIKEII-NASKAIATPIITATLLDD 1090
Query: 639 M-PKLEKKANRLAKSMTRITMADVLEKVKIKE 669
P+ ++ + T +A+ LE++ + +
Sbjct: 1091 SDPEFARRVKSRVEKTTLGEIAEYLEEIYVPD 1122
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 66/118 (55%), Gaps = 1/118 (0%)
Query: 890 KLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMN 949
K N+I ++ GIEAA II E++ +GI +D RHL L+AD MT +G V +
Sbjct: 1242 KCRCNNILEVSEVLGIEAARHQIITEMRETMEGHGISIDMRHLMLLADLMTRTGEVVGIT 1301
Query: 950 RNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
R+G+ ++ S + +FE + + A+ G+ D + S ++LG+ +QGTG F L
Sbjct: 1302 RHGLAKMKESALMLASFEKTADHLFDAAYYGQRDDVTGVSECIILGKPMKQGTGFFNL 1359
>gi|296422783|ref|XP_002840938.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637165|emb|CAZ85129.1| unnamed protein product [Tuber melanosporum]
Length = 1025
Score = 251 bits (640), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 210/684 (30%), Positives = 307/684 (44%), Gaps = 170/684 (24%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S L V + P+ PL G++QD + K+ RD FL R + MN++ + +
Sbjct: 12 RAEVSQLCMVPLNVVSPQKNGPLMGIVQDTLCGIYKMCRRDVFLNREQVMNIL---MWVP 68
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N + P I KP P WTGKQ++S VI G +
Sbjct: 69 NWDGTIPTPAILKPRPRWTGKQMISLVI------------------------PPGINKVD 104
Query: 133 LVHAVW----DTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAK 188
L W D + + GEL+ G+L+KK G + L+H +++ GA + +
Sbjct: 105 LAGGKWSPLNDEGLLVHGGELMFGLLNKKAVGQSHLSLIHIIYNEKGAYRCLEFFNGCQT 164
Query: 189 LFTVYLQRVGFTLGVRDIL------------VRQERDRKRTKIINKARRLGTEAACNALG 236
+ +L GF++G+ D + V++++D + + +KA+R E
Sbjct: 165 IVNYWLLHNGFSIGIGDTIPDKLTIEKIAATVKEKKD-EVNAVTDKAQRNELEP------ 217
Query: 237 LP----LDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPF 292
LP DT ++ L A + +A D + KSL D
Sbjct: 218 LPGMNIRDTFENLVQKSLNSA-----RDKAGSDTE-KSLKD------------------- 252
Query: 293 PANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGG 352
+NN M SG+KGS +N Q++ ++GQ +EGKR RTLP F + SP + G
Sbjct: 253 -SNNAIQMARSGSKGSNINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRG 311
Query: 353 FVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRD 412
FV+ ++ G+ PQEFFFH MAGREGLIDTAVKT+ +GY+QR LVK LE + Y
Sbjct: 312 FVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMAKY------ 365
Query: 413 SDLSLIQVLYGEDGLDVTKRQYLTDK-QFSFLEDNIKWICSYKVILNLLKKHPLSLALLL 471
D T R L D QF + ED + I K+ L P+++ +L
Sbjct: 366 ---------------DGTVRNSLGDIIQFIYGEDGLDGIVDEKLQL------PINILRIL 404
Query: 472 LLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAH 531
+ AR +R K +A + + H
Sbjct: 405 ---------------------------------ENARTIFRIKHRA---------RSNLH 422
Query: 532 FGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPST 591
++E + + V K V +F + PGE VGVLAAQSIGEP+T
Sbjct: 423 PLEVTEKVKELVKKL---------VSRF--------ARAAVQPGEMVGVLAAQSIGEPAT 465
Query: 592 QMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAK 651
QMTLNTFHFAG NVTLG+PRL+EIL +A K IKTPSM + +P+ ++ A L
Sbjct: 466 QMTLNTFHFAGVSSKNVTLGVPRLKEILNVA-KNIKTPSMMVYQVPENTHEKETAKALRS 524
Query: 652 SMTRITMADVLEKVKIKEWLEISP 675
++ T+ V E +I W + P
Sbjct: 525 AVEHTTLRSVTETTEI--WYDPDP 546
Score = 76.3 bits (186), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 70/132 (53%), Gaps = 1/132 (0%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D + Y N + +GIEA ++RE++ V A G V+ RHL+L+ D MT G
Sbjct: 615 VDTTRTYSNTFEEILQVFGIEATRGALLRELRQVLAFDGSYVNERHLALLCDVMTSRGHL 674
Query: 946 VAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
+A+ R+GI R + + + +FE +E + +A+ G D R S VMLGQ GTG F
Sbjct: 675 MAITRHGINRADTGALMRCSFEETVEILLEAAASGELDDCRGISENVMLGQLAPLGTGEF 734
Query: 1005 QLRNREKKKKKV 1016
+ EK +V
Sbjct: 735 DVFLDEKMLAEV 746
>gi|340939410|gb|EGS20032.1| RNA polymerase-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1541
Score = 251 bits (640), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 203/741 (27%), Positives = 331/741 (44%), Gaps = 128/741 (17%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + PK+G P+ QD + + LS +D F R + + Q L +
Sbjct: 529 RAEAINLMGVKHNLITPKNGEPIIAATQDFITAAYLLSSKDKFFDRETFTYICTQML-LG 587
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLST---------VIINLTPKDKVIIRHGELLSGILDK 123
T + PP I KP LWTGKQ+ + V++NL K+KV + + +D
Sbjct: 588 ETHLDLPPPAIMKPRCLWTGKQIFNVLMRPNKECPVLVNLDAKNKVFSKKKDGHPPDMD- 646
Query: 124 KQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLV-HAVWDTHGAEHAISL 182
+ D + +R+ E++ G +DK G + V + + +G ++A +
Sbjct: 647 -------------IDDAFLVVRNSEVMCGRMDKATVGGGKKNSVFYVILRDYGPDYAAAA 693
Query: 183 LSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTD 242
++ LAKL L GF++GV D+ + K++ A + C+
Sbjct: 694 MNRLAKLCARMLTLRGFSIGVGDVWPSGPLTAHKAKLVEDAYK-----RCD--------- 739
Query: 243 PEIISSQLQEAYASIP--QFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQF- 299
E+I + Q P ++ +L +V C ++ NN
Sbjct: 740 -ELIETYRQGKLEKAPGCSMEETLENMISGILSQVRQQAGNYC-----VDSLSNNNAPLI 793
Query: 300 MVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFM 359
M +SG+KGS +N Q+ +GQ + GKR R+LP F P + GFV F
Sbjct: 794 MAKSGSKGSDINVAQMIACVGQQIISGKRVPDGFQDRSLPHFHKNARQPPSKGFVRNSFY 853
Query: 360 TGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQ 419
TG+ P EF FH ++GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR S+ +++Q
Sbjct: 854 TGLTPSEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDDTVRTSEGNVVQ 913
Query: 420 VLYGEDGLD--------------------------------------------------- 428
YG D LD
Sbjct: 914 FQYGADRLDPVDMEGDAKPVDFARTWNHAQSITWDNKEPGLLPREIQRLCKEILDEERRK 973
Query: 429 VTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPH 488
+R +T+++ + ++ I+ + V++ + + + + L + + S
Sbjct: 974 YVRRHLVTNEELKYDDETIRTSMDHDVLIAIDEHESVRVYLNTIADYVRS----HAMKLA 1029
Query: 489 RTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLIS------TFQPDAHFGSISENLADS 542
R + ++ L + D+K RK+ +K++ + L S T +PD F + +LA+
Sbjct: 1030 RARKSVGLDPCIPEDDEKMRKEL-EKWQPAGKGLDSMEVDGQTKKPDFVFKELHRDLAED 1088
Query: 543 VVKYTKGRTDASHVDK-----------FYDMIFYKNLLSLANPGENVGVLAAQSIGEPST 591
+ + R A HVD+ F M +K + PG VG + AQSIGEP T
Sbjct: 1089 TPEKRQARAQA-HVDRVAKVSERTLRQFIQMCLHKYKKARVEPGHAVGAVGAQSIGEPGT 1147
Query: 592 QMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAK 651
QMTL TFHFAG M++T G+PR++EI+ A+K I TP + K++ KA R+ K
Sbjct: 1148 QMTLKTFHFAGVAGMSITQGVPRIKEII-NASKLISTPVITCKL---ENKVDIKAARVVK 1203
Query: 652 S-MTRITMADVLEKVKIKEWL 671
+ + + ++DV+ + EWL
Sbjct: 1204 ARIEKTYISDVISYID-DEWL 1223
Score = 63.2 bits (152), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 3/121 (2%)
Query: 890 KLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMN 949
+ N + GIEAA I E+++V + +DPRH+ L+AD MT+ G + +
Sbjct: 1376 QCVTNSVMECRDVLGIEAARTTIASEIRSVMK--DMNIDPRHMELLADVMTYKGEILGIT 1433
Query: 950 RNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRN 1008
R G+ ++ S +Q +FE + + A+ ++D + S +++GQ GTG FQ+
Sbjct: 1434 RFGLAKMRDSVLQLASFEKTPDHLFDAAAGMKKDRILGVSECIIMGQSMSIGTGAFQVVR 1493
Query: 1009 R 1009
R
Sbjct: 1494 R 1494
>gi|254584114|ref|XP_002497625.1| ZYRO0F09856p [Zygosaccharomyces rouxii]
gi|238940518|emb|CAR28692.1| ZYRO0F09856p [Zygosaccharomyces rouxii]
Length = 1458
Score = 250 bits (639), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 200/664 (30%), Positives = 307/664 (46%), Gaps = 99/664 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V S L PK G P+ QD + +S +D+F + + L+ +
Sbjct: 526 RAEAINLMGVKSNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDKYDMTQLL-SMMSDG 584
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLS---------TVIINLTPKDKVIIR-HGELLSGILD 122
+ PPTIWKP LWTGKQ+ S V++NL K+KV I + L +
Sbjct: 585 ALQFDIPPPTIWKPCYLWTGKQIFSLLIRPNKKSPVVLNLDAKNKVYIPPKSKSLPNEMS 644
Query: 123 KKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFG-STQYGLVHAVWDTHGAEHAIS 181
+ D V IR ++LSG++DK G ++ + + + +G++ A
Sbjct: 645 QN--------------DGFVLIRGSQILSGVMDKSVLGDGKKHSVFYTILRDYGSQEAAE 690
Query: 182 LLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNAL-----G 236
++ +AKL Y+ GF++G+ D+ +E K+ +++ A A C+ L
Sbjct: 691 AMNRMAKLCARYVGNRGFSIGISDVTPAEELKEKKEEMVESAY-----AKCDELIDLFSK 745
Query: 237 LPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPE--GLIEPFPA 294
L+T P Q EA + LL KV + +VC+ E + P
Sbjct: 746 GKLETQPGCNEEQTLEA-------------KIGGLLSKVREEVGEVCINELDNMNAPL-- 790
Query: 295 NNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFV 354
M G+KGST+N Q+ ++GQ + G R R+LP F +P++ GFV
Sbjct: 791 ----IMATCGSKGSTLNVSQMVAVVGQQIISGSRVPDGFQDRSLPHFPKNSKTPQSKGFV 846
Query: 355 DGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSD 414
F +G+ P EF +H ++GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR S
Sbjct: 847 RNSFFSGLTPPEFLYHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCLYDNTVRTSS 906
Query: 415 LSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALL---- 470
++Q YG DGLD + + + +F N W + V N + + L ++
Sbjct: 907 NGIVQFTYGGDGLDPLEMEG-NAQPVNF---NRTWDHATNVTFNNMDRGLLPYQIMQVTE 962
Query: 471 --------LLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYR--KKFKACPQ 520
L+ + + G N I +R + ++ +D R Y + F
Sbjct: 963 EILQPLENRLVRYDNLG--NEITKENRDRI------EYIDQNDAERGFYHSLRDFIWAKA 1014
Query: 521 PLISTF-----------QPDAHFGSI--SENLADSVVKYTKG--RTDASHVDKFYDMIFY 565
L++ F +P S+ EN+ + + R V +F +
Sbjct: 1015 QLLAKFRGSKDMKELMDEPALELQSVDLDENVPEDIRHSVDQVYRITDKMVREFLRVAIL 1074
Query: 566 KNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKA 625
K + PG VG + AQSIGEP TQMTL TFHFAG MNVTLG+PR++EI+ A+K
Sbjct: 1075 KYRRAKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII-NASKV 1133
Query: 626 IKTP 629
I TP
Sbjct: 1134 ISTP 1137
Score = 70.5 bits (171), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 66/119 (55%), Gaps = 1/119 (0%)
Query: 889 NKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAM 948
+K N I + S GIEAA I+ E+ + +G+ VDPRH+ L+ D MT+ G + +
Sbjct: 1310 HKTVTNHILEVYSVLGIEAARASIVGEIDYTMSNHGMSVDPRHIQLLGDVMTYKGEILGI 1369
Query: 949 NRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
R G+ ++ S +Q +FE + + A+ ++D++ S ++LGQ GTG F++
Sbjct: 1370 TRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVSECIILGQTMAIGTGAFKV 1428
>gi|308800888|ref|XP_003075225.1| RNA polymerase I, large subunit (ISS) [Ostreococcus tauri]
gi|116061779|emb|CAL52497.1| RNA polymerase I, large subunit (ISS) [Ostreococcus tauri]
Length = 1406
Score = 250 bits (638), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 201/674 (29%), Positives = 317/674 (47%), Gaps = 95/674 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLV-YQALCI 71
+AEA LM V PK+G L QD + + L+ +D F R++ LV Y +
Sbjct: 530 RAEAMQLMGVHHNLCTPKNGEILVAATQDFLTAAFLLTAKDVFFDRSQVGQLVAYMGDAL 589
Query: 72 LNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQY 131
L+ ++ T P I KP+ +WTGKQ+ ++I D++ + E+ + +KK
Sbjct: 590 LSVDLPT--PAIVKPIEMWTGKQIFG-MLIRPKASDQIFVNL-EVAEKLYNKKD------ 639
Query: 132 GLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKLF 190
D +V I++ E+++G L K GS + GL + + +G A ++ LAKL
Sbjct: 640 -KTMCPDDGYVCIQNSEIMAGRLGKATLGSGNKNGLFYVLNIEYGPVAAADAMNRLAKLS 698
Query: 191 TVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ- 249
+L GF++G+ D+ E + ++ + I A C D I S +
Sbjct: 699 ARWLGTRGFSIGIDDVSPAAELEAEKQRRIEDGY-----ATC---------DQRIASYEK 744
Query: 250 ----LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQF-MVESG 304
LQ + A++ +L V CL + P +N M G
Sbjct: 745 GTLPLQAGCNAEETLEAEV----LGVLSSVREAAGNACL-----QALPRHNAPLIMALCG 795
Query: 305 AKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQP 364
+KGST+N Q+ +GQ + G RP + R+LP F E +P A GFV F +G++P
Sbjct: 796 SKGSTINISQMVACVGQQAVSGSRPPDGFAHRSLPHFKRGEKTPAAKGFVANSFYSGMRP 855
Query: 365 QEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGE 424
EFFFH MAGREGL+DTAVKT+ +GY+ R L+K LE L++ YD TVR+S ++Q+ YG+
Sbjct: 856 TEFFFHTMAGREGLVDTAVKTAETGYMSRRLMKALEDLSLSYDGTVRNSMGGIVQLRYGD 915
Query: 425 DGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFI 484
DG++ T + +N + I + ++N+ HP
Sbjct: 916 DGMEPTLME----------SENAQPIEFKRCLMNVKGLHP-------------------- 945
Query: 485 FSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISE----NLA 540
+ T +L A K++K+ K + Q + G ISE ++
Sbjct: 946 -ARGEAPVTKAVLH-------AALAKFKKENKLLNTGDEADGQELVYGGGISELFFRQMS 997
Query: 541 DSVVKYTKGRTDA------SHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMT 594
+ + + +D S ++ F D+ K PG VG + AQSIGEP TQMT
Sbjct: 998 EFITSEIESPSDGGAVISESQLNTFLDVCMQKYNAKRIEPGTAVGAVGAQSIGEPGTQMT 1057
Query: 595 LNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKS-M 653
L TFHFAG MN+TLG+PR++EI+ A+K+I TP + + D + KA R+ K +
Sbjct: 1058 LKTFHFAGVASMNITLGVPRIKEII-NASKSISTPIISASLMSDR---DVKAARVVKGRV 1113
Query: 654 TRITMADVLEKVKI 667
+ T+ ++ I
Sbjct: 1114 EKTTLGEICSDAGI 1127
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 67/120 (55%), Gaps = 1/120 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N++ T GIEAA II+E+ + +G+ +D RH L+AD MT+ G + + R G+
Sbjct: 1257 NNVMECERTLGIEAARACIIKEIDDTMRAHGMSIDNRHSMLLADVMTYKGEVLGITRFGM 1316
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNREKK 1012
++ S + +FE + + A++ GR D + S +++G GTG+F+L++R K
Sbjct: 1317 AKMKDSVLMLASFEKTTDHLFDAALHGRTDYIDGVSECIIMGIPMPIGTGMFRLQHRAMK 1376
>gi|397135920|gb|AFO11455.1| RNA polymerase I, partial [Nakazawaea holstii]
Length = 870
Score = 249 bits (636), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 158/419 (37%), Positives = 229/419 (54%), Gaps = 39/419 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S + V Q + P+ P+ G++QD + K++LRD F+ E MN++Y I
Sbjct: 309 RAELSQICAVPLQIVSPQSNKPIMGIVQDTLCGVRKMTLRDVFIEYDEVMNILY---WIP 365
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + R PTI KP PLWTGKQ+LS VI PK I R E + L K
Sbjct: 366 DWDGRIPEPTIVKPKPLWTGKQMLSMVI----PKGINIERKDEKFT-YLSKD-------- 412
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
DT + I GE++ G+++KK G+T GL+HAV+ G + +L + K+
Sbjct: 413 ------DTGMLIVDGEIMLGVVNKKTVGATGGGLIHAVFREKGPQACATLFGNIQKVVNY 466
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + R T IN A+ E A L +P + L+E
Sbjct: 467 WLLHNGFSIGIGDTIADAPTVRSITDTINAAKDKVQEIITKAQNNQLPPEPGMT---LRE 523
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
++ Q +Q+ Q + + K T + Q NN++ MV +G+KGS +N
Sbjct: 524 SFE---QNVSQVLNQARDDVGKATADSLQ-----------DWNNVKQMVSAGSKGSNINI 569
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EGKR S R+LP F + SP + GFV+ ++ G+ PQEFFFH M
Sbjct: 570 SQMSACVGQQIVEGKRIPFGFSDRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAM 629
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTK 431
AGREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S +++Q +YGEDGLD T+
Sbjct: 630 AGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGNVLQFVYGEDGLDATQ 688
>gi|148669493|gb|EDL01440.1| mCG7865 [Mus musculus]
Length = 1349
Score = 249 bits (636), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 193/621 (31%), Positives = 281/621 (45%), Gaps = 98/621 (15%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF RA+ ++ L
Sbjct: 516 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 575
Query: 73 NTEI--RTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ +I R PPTI K
Sbjct: 576 DEKIKVRLPPPTILK--------------------------------------------- 590
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
W +VTI++ EL+ G +DK GS ++ + + + G A +S LA+L
Sbjct: 591 -----VCWGQYVTIQNSELMCGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARL 645
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
VYL GF++G+ D+ Q + + +++N + C+ L+T Q
Sbjct: 646 APVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYK-----KCDEYIEALNTG----KLQ 696
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
Q + A I ++ L + ++ CL E +N+ M G+KGS
Sbjct: 697 QQPGCTAEETLEALILKE----LSVIRDHAGSACLRE----LDKSNSPLTMALCGSKGSF 748
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ +GQ + G R R+LP F + P A GFV F +G+ P EFFF
Sbjct: 749 INISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFF 808
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H MAGREGL+DTAVKT+ +GY+QR LVK LE L YD+TVR S +IQ +YG DGLD
Sbjct: 809 HTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDP 868
Query: 430 TKRQYLTDK-QFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPH 488
+ + +F + DNIK + + L K L LT ++ K N F
Sbjct: 869 AAMEGKDEPLEFKRVLDNIKAVYPCQTEPALSKND-------LTLTAEAIMKKNE-FLCC 920
Query: 489 RTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK 548
+ F ++ + +K +K K +G + V Y
Sbjct: 921 QDSFLQEIKTFIKGVSEKIKKTRDK------------------YGINDNGTTEPRVLYQL 962
Query: 549 GRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
R + ++KF + K + + PG VG L AQSIGEP TQMTL TFHFAG MN+
Sbjct: 963 DRITPTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNI 1022
Query: 609 TLGIPRLREILMMATKAIKTP 629
TLG+PR++EI+ A+KAI TP
Sbjct: 1023 TLGVPRIKEII-NASKAISTP 1042
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 69/123 (56%), Gaps = 1/123 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N+ + + T GIEAA II E++ +G+ +D RH+ L++D MT+ G + + R G+
Sbjct: 1208 NNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGL 1267
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNREKK 1012
++ S + +FE + + A+ G++DS+ S +++G GTGLF+L ++ +
Sbjct: 1268 AKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKANR 1327
Query: 1013 KKK 1015
K
Sbjct: 1328 DPK 1330
>gi|213404374|ref|XP_002172959.1| DNA-directed RNA polymerase II subunit RPB1 [Schizosaccharomyces
japonicus yFS275]
gi|212001006|gb|EEB06666.1| DNA-directed RNA polymerase II subunit RPB1 [Schizosaccharomyces
japonicus yFS275]
Length = 1748
Score = 249 bits (636), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 156/425 (36%), Positives = 233/425 (54%), Gaps = 45/425 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE + V Q + P+ P+ G++QD + K SLRD FL+R MN++ L +
Sbjct: 504 RAEIQEIAMVPRQIVSPQSNKPVMGIVQDTLAGVRKFSLRDNFLSRDVVMNIM---LWVP 560
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVI---INLTPKDKVIIRHGELLSGILDKKQFGST 129
N + PP I KP PLWTGKQ+LS VI INLT D DK+ + +
Sbjct: 561 NWDGVVPPPVILKPKPLWTGKQILSLVIPKGINLTRDD--------------DKQTYINP 606
Query: 130 QYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKL 189
D + I +G+++ G++DKK G++Q GLVH +W G E S + + ++
Sbjct: 607 N--------DKGMLIENGDIVYGVVDKKTVGASQGGLVHTIWKEKGPEVCKSFFNGIQRV 658
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
+L GF++G+ D + + T+ + ARR TE +A L +P +
Sbjct: 659 VNFWLLHNGFSIGIGDTIADLATMKDITRTVKDARRQVTECIKDAQQNRLKPEPGMT--- 715
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
L+E F A++ R +L++ +N + E ++ +NN++ MV SG+KGS
Sbjct: 716 LRET------FEAKVSR----ILNQARDNAGRSA--EHSLKD--SNNVKQMVASGSKGSF 761
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+S +GQ +EGKR RTLP F + SP + GF++ ++ G+ PQEFFF
Sbjct: 762 INISQMSACVGQQIVEGKRIPFGFKYRTLPHFPKDDDSPESRGFIENSYLRGLTPQEFFF 821
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H MAGREGLIDTAVKT+ +GY+QR LVK +E + V YD TVR++ ++Q YGEDGLD
Sbjct: 822 HAMAGREGLIDTAVKTAETGYIQRRLVKAMEDVMVRYDGTVRNAMGDIVQFAYGEDGLDA 881
Query: 430 TKRQY 434
T +Y
Sbjct: 882 TIVEY 886
Score = 96.3 bits (238), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 51/96 (53%), Positives = 63/96 (65%), Gaps = 1/96 (1%)
Query: 572 ANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSM 631
NPGE VG LAAQSIGEP+TQMTLNTFH+AG NVTLG+PRL+EIL +A K IKTPS+
Sbjct: 1061 VNPGEMVGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVA-KNIKTPSL 1119
Query: 632 EIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKI 667
I LP++ A + + T+ V +I
Sbjct: 1120 TIYLLPEIASNMDLAKNVQTQIEHTTLKTVTSATEI 1155
Score = 80.1 bits (196), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 78/145 (53%), Gaps = 2/145 (1%)
Query: 863 KESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 922
++ + +L+TDGIN+ S +D ++ Y N + GIEA +++E++NV
Sbjct: 1306 RDDEWVLETDGINLAE-SMAVEGVDPSRTYSNSFVEVLQVLGIEATRSALLKELRNVIEF 1364
Query: 923 YGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGRE 981
G V+ RHL+L+ D MT G +A+ R+GI R + + +FE +E + A+ G +
Sbjct: 1365 DGSYVNYRHLALLCDVMTSRGHLMAITRHGINRAETGALMRCSFEETVEILMDAAASGEK 1424
Query: 982 DSLRAPSARVMLGQECRQGTGLFQL 1006
D R S +MLGQ GTG F +
Sbjct: 1425 DGCRGVSENIMLGQLAPMGTGSFDV 1449
>gi|452844664|gb|EME46598.1| hypothetical protein DOTSEDRAFT_70566 [Dothistroma septosporum NZE10]
Length = 1491
Score = 249 bits (635), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 196/648 (30%), Positives = 302/648 (46%), Gaps = 80/648 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLV---YQAL 69
+ EA+ LM V PK+G+P+ IQD + +S +D F +R ++ ++V Y AL
Sbjct: 536 RTEATELMGVKHNLATPKNGTPIIAAIQDFITGAYLISQKDLFFSRRQFTHVVSFMYNAL 595
Query: 70 CILNT------EIRTLPPTIWKPMPLWTGKQVLSTVI-------INLTPKDKVIIRHGEL 116
+ + I PP IWKP LWTGKQ+ + ++ +N+ + K+
Sbjct: 596 EVTDPYTGKKYPIEIPPPAIWKPQTLWTGKQIWNLLMKPHRDYPVNVNLEAKL------- 648
Query: 117 LSGILDKKQFGSTQY-----GLVHAVWDTHVTIRHGELLSGILDKKQFG-STQYGLVHAV 170
KQF +V + D+++ IR+ E + G DK G + + + +
Sbjct: 649 -------KQFAPPSRPGDADDMVDS--DSYLVIRNSETMCGAFDKATIGDGKKTSVFYVI 699
Query: 171 WDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEA 230
G ++A + ++ LAKL +L GF++G+ D+ + + ++ ++I+ A + E
Sbjct: 700 MRDFGPDYAAAAMTRLAKLSARWLGERGFSIGISDVYPSDKLNARKQELIDTAYKACDEV 759
Query: 231 ACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIE 290
L+ P Q E S +L KV C E +
Sbjct: 760 IDKFKKGKLERSPGCDEEQTMEITLS-------------GILSKVRAQCADACFAE--LS 804
Query: 291 PFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRA 350
F N M + G+KGS +N Q+ +GQ + G+R RTLP F P A
Sbjct: 805 KF--NAPMTMAKCGSKGSNINVSQMVASVGQQIIGGQRVLEGFQDRTLPHFPKASRDPLA 862
Query: 351 GGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTV 410
GFV F +G+ P EF FH M+GREGL+DTAVKT+ +GY+ R L+K LE L+ YD+TV
Sbjct: 863 KGFVADSFFSGLTPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSAQYDLTV 922
Query: 411 RDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALL 470
R+S ++Q+ +G+DGLD + + K +F W+ + N ++ L++A +
Sbjct: 923 RNSSSGVVQMKFGDDGLDPVDMEG-SAKPVNFER---TWMHAITSTWNNSER-TLTMAEI 977
Query: 471 LLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLIS-TFQPD 529
L L N R K + + E +L+ + K K Q S TF D
Sbjct: 978 LELV-------NTTLDAERVKL-IRVSEDGKRLEYTYDWEVEKNLKLVDQSEYSRTFLDD 1029
Query: 530 AHFGSISENLADSVVKYT---KGRTDA-----SHVDKFYDMIFYKNLLSLANPGENVGVL 581
AD +VK +G D S +D+F + K S G VG +
Sbjct: 1030 --IAGFIVGKADKMVKNQAKLEGSQDIFKITRSALDRFLQLCLRKYEKSKTEAGHAVGAV 1087
Query: 582 AAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
A SIGEP TQMTL TFHFAG M++T G+PR++EI+ A+K I TP
Sbjct: 1088 GAHSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEII-NASKVISTP 1134
Score = 70.5 bits (171), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 67/114 (58%), Gaps = 3/114 (2%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N++ M GIEAA + II E+ +V G+++DPRH+ L+AD MT+ G + + R G+
Sbjct: 1324 NNVMEMRDVLGIEAARKTIIDEISSVMG--GMDIDPRHMQLLADVMTYKGEVLGITRFGL 1381
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
++ S +Q +FE + + +A+ + ++D + S +++GQ GTG ++
Sbjct: 1382 AKMRDSVLQLASFEKTPDHLFEAAAKMKKDDIEGVSECIIMGQSMGVGTGAMKV 1435
>gi|353234990|emb|CCA67009.1| probable RPO31-DNA-directed RNA polymerase III, 160 KD subunit
[Piriformospora indica DSM 11827]
Length = 1371
Score = 248 bits (634), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 189/644 (29%), Positives = 297/644 (46%), Gaps = 84/644 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+ EA LM+V + PK+G P+ QD + + LS +D F R ++ + +
Sbjct: 508 RTEALQLMSVKLNLVTPKNGEPVIAATQDFITAAFLLSGKDRFYDRRQFTQIC-SYMADA 566
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ I PPTIWKP LWTGKQV V++ + K + + + + + +
Sbjct: 567 QSHIDIPPPTIWKPKQLWTGKQVFG-VLMRPSRKSRSFVNLETRC------QTYQAPKAD 619
Query: 133 LVHAVW--------DTHVTIRHGELLSGILDKKQFGSTQYGLVHAVW-DTHGAEHAISLL 183
+H D + I + +++ G++DK GS + + V +G + A + +
Sbjct: 620 RLHGFTPLPDLSPNDGWLVIVNSQVMCGVMDKATVGSGKKKSIFGVLLRDYGPDEAANAM 679
Query: 184 SCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDP 243
+ LAKL +L VG +LG+ D++ + ++ + A + E A LD P
Sbjct: 680 NRLAKLCARWLTNVGMSLGINDVIPGSDLRTQKEGKVEAAYQDCQELIAKAKLGKLDNKP 739
Query: 244 EIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVES 303
Q EA S +L KV ++ +C+ E P M
Sbjct: 740 GCNQEQTLEAMIS-------------DVLSKVRGDVGSICMQELSRHNAPL----IMATC 782
Query: 304 GAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQ 363
G+KGSTVN Q+ +GQ + G R R+LP F P + GFV F +G+
Sbjct: 783 GSKGSTVNVSQMVACVGQQIIAGHRVPDGFQDRSLPHFHKRSKDPPSKGFVRNSFFSGLS 842
Query: 364 PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYG 423
P EF FH ++GREGL+DTAVKT+ +GY+QR L+K + LT HYD +VR+S ++Q +YG
Sbjct: 843 PTEFVFHAISGREGLVDTAVKTAETGYMQRRLMK-AKDLTTHYDFSVRNSHGGIVQFMYG 901
Query: 424 EDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNF 483
+DGLD + + L+ N W+ + V SG+
Sbjct: 902 DDGLDPAS----LEGEAQPLDLNRSWMHAEAV----------------------SGRHGR 935
Query: 484 IFSPHRTKFTMDLLEQWYQLDDKARK---KYRKKFKACPQPLISTFQ-----------PD 529
SP ++L +++ + DD A++ Y + + + S + P
Sbjct: 936 SLSPAE---IINLTDEFVKGDDFAKQCSVVYARAVTNFIRGICSRMEAIGRRHNLPKTPQ 992
Query: 530 AHFGSISENL----ADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQS 585
H +SE++ D + K + H++ F + + + PG VG + AQS
Sbjct: 993 DHT-VLSESVLVYHGDYIAAENKCKVTKQHLETFLQICKDRYSRAKVEPGSTVGAVGAQS 1051
Query: 586 IGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
IGEP TQMTL TFHFAG MNVTLG+PR++EI+ A+K I TP
Sbjct: 1052 IGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII-NASKTINTP 1094
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 2/120 (1%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N I + GIEAA R II E++ + +G+ +DPRH+ L+ D MT+ G + + R G+
Sbjct: 1238 NHIIEVEKVLGIEAARRTIINEIEYTMSQHGMYIDPRHIMLLGDVMTYKGQVLGITRFGV 1297
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQ-GTGLFQLRNREK 1011
++ S + +FE + + AS G+ DS+ S ++LG GT + L N +
Sbjct: 1298 SKMKDSVLMLASFEKTTDHLFDASAFGKNDSVLGVSESIILGNPAASCGTSMPGLVNNSR 1357
>gi|397135977|gb|AFO11483.1| RNA polymerase I, partial [Schizosaccharomyces pombe]
Length = 868
Score = 248 bits (634), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 46/435 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE + V Q + P+ P+ G++QD + K SLRD FLTR MN++ L +
Sbjct: 311 RAEIQEITMVPKQIVSPQSNKPVMGIVQDTLAGVRKFSLRDNFLTRNAVMNIM---LWVP 367
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + PP I KP LWTGKQ+LS +I PK +IR D KQ S
Sbjct: 368 DWDGILPPPVILKPKVLWTGKQILSLII----PKGINLIRD--------DDKQSLSNPT- 414
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
D+ + I +GE++ G++DKK G++Q GLVH +W G E + + ++
Sbjct: 415 ------DSGMLIENGEIIYGVVDKKTVGASQGGLVHTIWKEKGPEICKGFFNGIQRVVNY 468
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + + ++ T+ + +ARR E +A L +P + L+E
Sbjct: 469 WLLHNGFSIGIGDTIADADTMKEVTRTVKEARRQVAECIQDAQHNRLKPEPGMT---LRE 525
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
+ F A++ R +L++ +N + E ++ +NN++ MV +G+KGS +N
Sbjct: 526 S------FEAKVSR----ILNQARDNAGRSA--EHSLKD--SNNVKQMVAAGSKGSFINI 571
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EGKR RTLP F + SP + GF++ ++ G+ PQEFFFH M
Sbjct: 572 SQMSACVGQQIVEGKRIPFGFKYRTLPHFPKDDDSPESRGFIENSYLRGLTPQEFFFHAM 631
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKR 432
AGREGLIDTAVKT+ +GY+QR LVK +E + V YD TVR++ +IQ YGEDGLD T
Sbjct: 632 AGREGLIDTAVKTAETGYIQRRLVKAMEDVMVRYDGTVRNAMGDIIQFAYGEDGLDATLV 691
Query: 433 QY-------LTDKQF 440
+Y L+ KQF
Sbjct: 692 EYQVFDSLRLSTKQF 706
>gi|169597423|ref|XP_001792135.1| hypothetical protein SNOG_01497 [Phaeosphaeria nodorum SN15]
gi|160707519|gb|EAT91146.2| hypothetical protein SNOG_01497 [Phaeosphaeria nodorum SN15]
Length = 1473
Score = 248 bits (634), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 202/699 (28%), Positives = 317/699 (45%), Gaps = 100/699 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLV------- 65
+ EA+ LM V PK+G+P+ IQD + + LS + F R + +V
Sbjct: 542 RTEATELMGVKYNLATPKNGTPIIAAIQDFITAAFILSNKSNFYDRRTFCQIVNYMFTGE 601
Query: 66 --YQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDK 123
Y I PP IWKP LWTGKQV + + + P + S +L
Sbjct: 602 GAYDPDTGKYLPIEIPPPVIWKPQALWTGKQVFNLL---MRPNKQ---------SRVLVN 649
Query: 124 KQFGSTQYGLVHAVW------DTHVTIRHGELLSGILDKKQFG-STQYGLVHAVWDTHGA 176
+ G QY V D ++ IR+ E++ G++DK G + + + + G
Sbjct: 650 LEAGCKQYKPVQGRAPDLDENDAYLIIRNSEVMCGVMDKSTVGDGKKESVFYVMMRDFGP 709
Query: 177 EHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALG 236
EHA+ ++ LA+L +L GF+LG+ D+ + ++K+ ++ +A A C+ L
Sbjct: 710 EHAVQGMNRLARLSARWLTNNGFSLGISDVTPGEVLNQKKQALVEEAY-----AKCDKL- 763
Query: 237 LPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANN 296
+ +LQ A + ++ Q +L V +C E + + N+
Sbjct: 764 -----IKDFKEGKLQRAAGCDEEQTMEV--QIGGILSGVRQAAGDICFEE--LSRW--NS 812
Query: 297 LQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDG 356
M + G+KGS +N Q+ +GQ + G R A RTLP F P A GFV
Sbjct: 813 PLLMAKCGSKGSNINVSQMVASVGQQMIGGARVADGFHHRTLPHFPKAARQPAAKGFVSN 872
Query: 357 RFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLS 416
F +G+ P EF FH M+GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR+S +
Sbjct: 873 SFYSGLTPSEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSAQYDDTVRNSSGT 932
Query: 417 LIQVLYGE---DGLDVTKRQYLT--DKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLL 471
++Q YG+ D +D+ R D+ FS + + ++ H L+
Sbjct: 933 VVQFQYGDDNLDPVDMEGRAQPVAFDRTFSHAITSTWDNSEPSLTPEAVRAHTLAK---- 988
Query: 472 LLTFKSSGKPNFIF---SP----HRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLIS 524
L + + P F +P ++ ++D E D + K + L+
Sbjct: 989 -LNTERNKYPRFKLDGITPLEYNDKSDSSIDQKESLRDFLDTVQTYISGKAQKLETTLV- 1046
Query: 525 TFQPDAHFGSISEN--------------LADSVVKYTKGRTDASHVDKFYDMIFYKNLLS 570
H G E+ LAD + K ++ + +D F D+ K S
Sbjct: 1047 ------HLGVSLEDCSTKRSEADREKYTLADGIAKISQ-----TALDTFIDLCLTKYHRS 1095
Query: 571 LANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPS 630
PG VG + AQSIGEP TQMTL TFHFAG M++T G+PR++EI+ A+ I TP
Sbjct: 1096 RVQPGHAVGAIGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEII-NASSTISTPV 1154
Query: 631 MEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKE 669
+ +N++++S RI A V EK +++
Sbjct: 1155 ITCVL----------SNKISESAARIVKARV-EKTYLRD 1182
Score = 70.1 bits (170), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 66/118 (55%), Gaps = 3/118 (2%)
Query: 890 KLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMN 949
K N + + + GIEAA I+RE+ V +++DPRH++L+AD MT G +
Sbjct: 1333 KTMSNHVMEVRTVLGIEAARATIMREISAVMG--NMDIDPRHMALLADVMTFKGDVYGIT 1390
Query: 950 RNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
R G+ + S +Q +FE + + +A+ +G+ D++ S +++GQ + GTG Q+
Sbjct: 1391 RFGLQKTRDSVLQLASFEKTPDHLFEAAARGKTDTIDGVSESIIMGQSMKLGTGALQV 1448
>gi|115459150|ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group]
gi|38346223|emb|CAE02045.2| OJ990528_30.3 [Oryza sativa Japonica Group]
gi|38347455|emb|CAD41360.2| OSJNBa0076N16.24 [Oryza sativa Japonica Group]
gi|113564746|dbj|BAF15089.1| Os04g0492300 [Oryza sativa Japonica Group]
gi|116310339|emb|CAH67354.1| OSIGBa0130B08.14 [Oryza sativa Indica Group]
gi|116310740|emb|CAH67535.1| H0425E08.3 [Oryza sativa Indica Group]
gi|215768005|dbj|BAH00234.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218195112|gb|EEC77539.1| hypothetical protein OsI_16437 [Oryza sativa Indica Group]
Length = 1383
Score = 248 bits (634), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 216/742 (29%), Positives = 331/742 (44%), Gaps = 119/742 (16%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLV-YQALCI 71
+ EA LM V + PK+G L QD + S ++ +D F R+ + L Y +
Sbjct: 504 RTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFLVTRKDNFYDRSSFSLLCSYLGDAM 563
Query: 72 LNTEIRTLPPTIWKPMPLWTGKQVLST---------VIINLTPKDKVIIRHGELLSGILD 122
N ++ T P + KP+ LWTGKQ+ S V +NLT K+K+
Sbjct: 564 ENIDLPT--PALIKPIELWTGKQLFSVLVRPNACTKVFLNLTVKEKIY------------ 609
Query: 123 KKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAIS 181
K GST D V R+ ELLSG + K G+ + G+ + + + A S
Sbjct: 610 KTPKGSTLEPEAMCPNDGFVYFRNSELLSGQVGKATLGNGNKDGMFSTLVRDYNSHAAAS 669
Query: 182 LLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDT 241
++ LAK ++ GF++GV D+ + ++++ I+ G C+
Sbjct: 670 CMNRLAKFSARFIGNHGFSIGVDDVQPGEHLNQEKKMKID-----GGYKDCH-------- 716
Query: 242 DPEIISSQLQEAYASIPQFRAQ--IDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQF 299
++I+S + A P A +++ +L+++ +VC+ N L +
Sbjct: 717 --DLIASYSKGALRLQPGCNAAQTLEQSITRVLNEIREEAGKVCM----------NTLHW 764
Query: 300 ------MVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGF 353
M + G+KGS +N Q+ +GQ + G+R RTLP F +P A GF
Sbjct: 765 RNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRTLPHFPINSKTPAAKGF 824
Query: 354 VDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDS 413
V F TG+ EFFFH M GREGL+DTAVKT+ +GY+ R L+K LE L+V YD TVR++
Sbjct: 825 VANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNA 884
Query: 414 DLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLL 473
++Q LYG+DG+D K + K PL+L L +
Sbjct: 885 SGGIVQFLYGDDGMDPAKMEGKDGK-------------------------PLNLDQLFMK 919
Query: 474 TFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQP---LISTFQPDA 530
+ P R + T+ E L+DK + C + L++ F D
Sbjct: 920 VMAT--------CPQRGQNTLSPGEILQILNDKLSEHDASSDDGCSEKFKQLLTYFLEDR 971
Query: 531 ----------------HFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANP 574
H G + +S+ G + F D + L
Sbjct: 972 IKLLKSTRRALLLDEDHVGERHSSFEESIAANISG-ISVKQLQVFLDTCLSRYHLKKIEA 1030
Query: 575 GENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIP 634
G ++G + AQSIGEP TQMTL TFHFAG MNVTLG+PR++EI+ A K I TP +
Sbjct: 1031 GASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII-NAAKKISTPIITAE 1089
Query: 635 FLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCFIPA-HMY 693
L + L A + SM + + +V E +KI + S +P++ ++ I A HM
Sbjct: 1090 LLSEKDVLS--ARIVKGSMEKAVLGEVAEAIKI---VLKSSQPNLVVKLDMQRIEALHMG 1144
Query: 694 RDKTSVKPSKIIDHFERKFLKE 715
SV+ S I++H + K E
Sbjct: 1145 ISADSVQLS-ILNHPKIKLKSE 1165
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 80/150 (53%), Gaps = 2/150 (1%)
Query: 861 EEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 920
EE + ++ L +G N+ + + D K N I + T GIEAA R II E++
Sbjct: 1219 EENDKRYKLLVEGTNLLAVMGTPGV-DAMKTKSNHIMEVNRTLGIEAARRSIIDEIQYTM 1277
Query: 921 AVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQG 979
+G+ +D RH+ L+AD MT+ G + + R GI ++ S + +FE E + AS G
Sbjct: 1278 KSHGMNIDSRHMMLLADLMTYKGEILGITRYGIAKMKSSVLMLASFEKTAEHLFNASYSG 1337
Query: 980 REDSLRAPSARVMLGQECRQGTGLFQLRNR 1009
RED + S +++G + GTG+ ++R R
Sbjct: 1338 REDQIEGVSECIIMGIPMQLGTGILKVRQR 1367
>gi|440634119|gb|ELR04038.1| hypothetical protein GMDG_06549 [Geomyces destructans 20631-21]
Length = 1478
Score = 248 bits (634), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 195/658 (29%), Positives = 304/658 (46%), Gaps = 78/658 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+ EA LM V + PK G P+ QD + + LS ++ F R + +L +
Sbjct: 534 RTEAINLMGVKNNLCTPKSGEPIISATQDFITAAYLLSSKENFFDRKTFAHLCMY-MVDG 592
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVI-INLTPKDKVIIRHGELLSGILDKKQFGSTQY 131
+I PP I KP LWTGKQV S ++ N T KV L + D K
Sbjct: 593 KMDIDIPPPAIIKPEALWTGKQVFSVLMRPNKTSPVKV-----NLDAKCRDYKAVAGQAP 647
Query: 132 GLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLV-HAVWDTHGAEHAISLLSCLAKLF 190
+ D + +R+ E++ G +DK GS + + + + G +HA+ ++ LAKL
Sbjct: 648 DMDPN--DGWLVVRNSEVMCGRMDKTTVGSGKKDCIFYTILRDFGPDHAVLAMNRLAKLS 705
Query: 191 TVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQL 250
YL GF++G+ D+ + + ++ ++ KA A C+ L + + S +L
Sbjct: 706 ARYLTNRGFSIGISDVYPSKSLEDQKLALVTKAY-----AECDDLIV------QFKSGKL 754
Query: 251 QEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTV 310
++A ++ + +L +V + C+ + + N+ M +SG+KGS +
Sbjct: 755 EKATGC--NMEETLENKISGILSRVRQQAGEFCI--NTLSKW--NSPLIMAKSGSKGSNI 808
Query: 311 NTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFH 370
N Q+ L+GQ + G R A RTLP F P + GFV F G+ P EF FH
Sbjct: 809 NVAQMVTLVGQQMISGARVADGFQDRTLPHFPKNARQPPSKGFVRNSFFGGLTPTEFLFH 868
Query: 371 CMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVT 430
++GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR+S ++Q +G D LD
Sbjct: 869 AISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDDTVRNSSGGIVQFQFGADKLDP- 927
Query: 431 KRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPHRT 490
D + S + + ++ L P LL ++ + + + P +
Sbjct: 928 -----VDMEGSAVPVHFDRTYTHAESLTWDNNDP------ALLPYEITAQCAALLEPEKA 976
Query: 491 KFTMDLL----------EQWYQLD--DKAR------KKY----------RKKFKACPQPL 522
K T L + Y +D + AR KY +K P+
Sbjct: 977 KLTRRGLLHNEKLEYNDQSDYAIDELESARGFVSEVSKYVGRLAQKLSQARKRAGLPELT 1036
Query: 523 ISTFQPDAHFGSISE-----NLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGEN 577
+ D H+ +E N D V K ++ + + KF ++ K L + PG
Sbjct: 1037 ENPSLSDIHYNPATEDQTRRNQMDRVAKVSE-----ATLAKFIELCLTKYLKAHVEPGHA 1091
Query: 578 VGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPF 635
VG + AQSIGEP TQMTL TFHFAG M++T G+PR++EI+ A+K I TP M P
Sbjct: 1092 VGAVGAQSIGEPGTQMTLRTFHFAGVAGMSITQGVPRIKEII-NASKLISTPVMTCPL 1148
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 83/163 (50%), Gaps = 5/163 (3%)
Query: 859 LFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKN 918
+ ++ + +H + +G + ++ ++ N + GIEAA I E+++
Sbjct: 1287 IIQQDKGEHTVHVEGYGLRACMTTEGVIG-TRVTTNSVVECNQVLGIEAARTTIANEIES 1345
Query: 919 VFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASM 977
V + + +DPRH+ L+AD MT+ G + + R G+ ++ S +Q +FE + + A+
Sbjct: 1346 VMS--EMNIDPRHMQLLADVMTYKGEILGITRFGLSKMRDSVLQLASFEKTPDHLFDAAA 1403
Query: 978 QGREDSLRAPSARVMLGQECRQGTGLFQ-LRNREKKKKKVEAK 1019
++D++ S +++GQ GTG F+ +R K V+AK
Sbjct: 1404 GMKKDAIEGVSECIIMGQTMSVGTGAFKVVRKLGLKDTDVKAK 1446
>gi|452825408|gb|EME32405.1| DNA-directed RNA polymerase subunit [Galdieria sulphuraria]
Length = 1423
Score = 248 bits (633), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 202/640 (31%), Positives = 303/640 (47%), Gaps = 76/640 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVY-QALCI 71
+AEA+ LM V + P++G PL QD + + K + +D +L RAE+ +++ L
Sbjct: 530 RAEAATLMCVQENLVTPRNGEPLIAATQDFLSACYKFTCKDVYLDRAEFTRIIFLSGLQS 589
Query: 72 LNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG---- 127
+ +++ P I KP +WTGKQ +S I+ L P + ++ + +KQ+
Sbjct: 590 VAYDLKLPNPAIIKPFEMWTGKQAIS-FILRLCPGFQT-------MTAYVYEKQWSHPSG 641
Query: 128 -STQYGLVHAVW-DTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLS 184
+ + H D +V IR+GELL G L K GS ++ L + + G A S +S
Sbjct: 642 YESNFLAPHLCKNDGYVYIRNGELLCGQLGKASLGSGSKRSLFYLLSREGGNSAAASAMS 701
Query: 185 CLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPE 244
++K + + GF+LG+ D+ +I +AR+ + A D E
Sbjct: 702 MISKFASRWFSDFGFSLGIDDV---------TPSVILQARK---DELLRAGYKDCDDLIE 749
Query: 245 IISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESG 304
S+ EA ++ ++L K+ + +VC+ I+P N+ M G
Sbjct: 750 AFQSRTLEARPGC-TVEQTLEVSINAVLSKIREDAGKVCI--AAIDP-KVNSAMAMALCG 805
Query: 305 AKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLP--YEVSPRAGGFVDGRFMTGI 362
+KGS +N Q+ +GQ + G R GR LP F +P A GFV F +G+
Sbjct: 806 SKGSNINISQMISCVGQQTVNGCRVPDGFLGRALPHFASGMSARTPWAKGFVKNSFFSGM 865
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
EFFFH MAGREGL+DTAVKT+ +GY+QR L+K LE L+V+YD TVR SD +++Q LY
Sbjct: 866 TATEFFFHTMAGREGLVDTAVKTAETGYMQRRLMKALEDLSVNYDNTVRYSDGTVVQFLY 925
Query: 423 GEDGLDVTK-------------RQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLAL 469
G+DG+D T Q L D + E IK ++ + + + S
Sbjct: 926 GDDGMDPTVVEGASGANCPLNLEQLLEDSK---AEGTIKSKGEPRLNPDEVIHYADS--- 979
Query: 470 LLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPD 529
LTF S G F S K D+ + K + + +C
Sbjct: 980 ---LTFHSFGA--FEDSESHLKILRDVKNFLSSIARKHEMELERISSSCSN--------- 1025
Query: 530 AHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEP 589
GS+ + D+ K S +D I +K PG VG + AQSIGEP
Sbjct: 1026 ---GSMLRDTIDAAFGLRK-----SQLDALVRRIVHKLQRFKIEPGTAVGAIGAQSIGEP 1077
Query: 590 STQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
TQMTL TFHFAG MN+TLG+PR++EI+ A+ I TP
Sbjct: 1078 GTQMTLKTFHFAGVASMNITLGVPRIKEII-NASPIINTP 1116
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 64/119 (53%), Gaps = 1/119 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N + + GIEAA + + E++ A +G+ +D RH++L+AD M+ G + + R GI
Sbjct: 1280 NHVIIVEKVLGIEAARKTVASEIQYTMASHGMSIDTRHVALLADVMSFRGEILGITRFGI 1339
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNREK 1011
++ S I +FE ++ + A++ +D + S V++G GTGLF L ++
Sbjct: 1340 GKMKTSAIMLASFEKTVDHLFDAALYKTQDDVVGVSECVIMGMPVPLGTGLFGLLRNDR 1398
>gi|19112465|ref|NP_595673.1| RNA polymerase II large subunit Rpb1 [Schizosaccharomyces pombe
972h-]
gi|548817|sp|P36594.1|RPB1_SCHPO RecName: Full=DNA-directed RNA polymerase II subunit rpb1;
Short=RNA polymerase II subunit 1; Short=RNA polymerase
II subunit B1; AltName: Full=DNA-directed RNA polymerase
III largest subunit
gi|256599715|pdb|3H0G|A Chain A, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|256599727|pdb|3H0G|M Chain M, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|5055|emb|CAA39916.1| RNA polymerase II large subunit [Schizosaccharomyces pombe]
gi|6018696|emb|CAB57941.1| RNA polymerase II large subunit Rpb1 [Schizosaccharomyces pombe]
Length = 1752
Score = 247 bits (630), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 46/435 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE + V Q + P+ P+ G++QD + K SLRD FLTR MN++ L +
Sbjct: 504 RAEIQEITMVPKQIVSPQSNKPVMGIVQDTLAGVRKFSLRDNFLTRNAVMNIM---LWVP 560
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + PP I KP LWTGKQ+LS +I PK +IR D KQ S
Sbjct: 561 DWDGILPPPVILKPKVLWTGKQILSLII----PKGINLIRD--------DDKQSLSNPT- 607
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
D+ + I +GE++ G++DKK G++Q GLVH +W G E + + ++
Sbjct: 608 ------DSGMLIENGEIIYGVVDKKTVGASQGGLVHTIWKEKGPEICKGFFNGIQRVVNY 661
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + + ++ T+ + +ARR E +A L +P + L+E
Sbjct: 662 WLLHNGFSIGIGDTIADADTMKEVTRTVKEARRQVAECIQDAQHNRLKPEPGMT---LRE 718
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
+ F A++ R +L++ +N + E ++ +NN++ MV +G+KGS +N
Sbjct: 719 S------FEAKVSR----ILNQARDNAGRSA--EHSLKD--SNNVKQMVAAGSKGSFINI 764
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EGKR RTLP F + SP + GF++ ++ G+ PQEFFFH M
Sbjct: 765 SQMSACVGQQIVEGKRIPFGFKYRTLPHFPKDDDSPESRGFIENSYLRGLTPQEFFFHAM 824
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKR 432
AGREGLIDTAVKT+ +GY+QR LVK +E + V YD TVR++ +IQ YGEDGLD T
Sbjct: 825 AGREGLIDTAVKTAETGYIQRRLVKAMEDVMVRYDGTVRNAMGDIIQFAYGEDGLDATLV 884
Query: 433 QY-------LTDKQF 440
+Y L+ KQF
Sbjct: 885 EYQVFDSLRLSTKQF 899
Score = 93.2 bits (230), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 65/98 (66%), Gaps = 1/98 (1%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
++ +PGE VG LAAQSIGEP+TQMTLNTFH+AG NVTLG+PRL+EIL +A K IKTP
Sbjct: 1059 AVVSPGEMVGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVA-KNIKTP 1117
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKI 667
S+ I +P + A + + T++ V +I
Sbjct: 1118 SLTIYLMPWIAANMDLAKNVQTQIEHTTLSTVTSATEI 1155
>gi|120561227|gb|ABM26999.1| RNA polymerase II largest subunit, partial [Catenaria anguillulae]
Length = 1020
Score = 247 bits (630), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 152/420 (36%), Positives = 217/420 (51%), Gaps = 37/420 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V Q + P+ P+ G++QD + K + RDTF+ RA MNL+ + +
Sbjct: 434 RAEIQQLCMVPLQIVSPQSNKPVMGIVQDTLCGITKFTRRDTFMDRAMVMNLL---MWVP 490
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ PP I KP P+WTGKQ++S +I PK + H G D G
Sbjct: 491 GWDGNMPPPAIVKPKPMWTGKQIMSLII----PKVNAVTFHSTHPDGETDLLSPG----- 541
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
DT V + GEL++GI+ KK G+ GLVH W HG E A +LL+ +
Sbjct: 542 ------DTRVIVEDGELVAGIVCKKTVGTAAGGLVHVSWMEHGPEAAKALLNGCQTIVNY 595
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + E K+I AR+ E A L+ Q
Sbjct: 596 WLLHTGFSVGIGDTVADDETTDLINKMIFDARQRVNEIIGEAQSDKLER---------QT 646
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPA-NNLQFMVESGAKGSTVN 311
F A ++R ++K + F NN++ MV +G+KGS +N
Sbjct: 647 GMTLRETFEANVNRTLNEAVNKAGG---------AAAKSFKVHNNVKHMVVAGSKGSNIN 697
Query: 312 TMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHC 371
Q+S +GQ +EGKR R+LP F+ + SP + GFV+ ++ G+ PQEFFFH
Sbjct: 698 ISQMSACVGQQNVEGKRIPFGFQYRSLPHFVKDDYSPESRGFVENSYLRGLNPQEFFFHA 757
Query: 372 MAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTK 431
M GREGLIDTAVKT+ +GY+QR LVK LE + V YD TVR++ ++IQ LYGEDG+D T+
Sbjct: 758 MGGREGLIDTAVKTAETGYIQRRLVKALEDIMVKYDGTVRNAQGNIIQFLYGEDGMDGTR 817
>gi|401405454|ref|XP_003882177.1| putative DNA-directed RNA polymerase I largest subunit [Neospora
caninum Liverpool]
gi|325116591|emb|CBZ52145.1| putative DNA-directed RNA polymerase I largest subunit [Neospora
caninum Liverpool]
Length = 2799
Score = 247 bits (630), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 164/467 (35%), Positives = 234/467 (50%), Gaps = 55/467 (11%)
Query: 260 FRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLL 319
F +D ++S + KV + + + FP N M++SG+KGS VN IS L
Sbjct: 1633 FNEMLDAFFQSAMGKVASKSTDIMKGSYFLYRFPRNGFASMIKSGSKGSNVNFAMISVFL 1692
Query: 320 GQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLI 379
GQ LEG+R M S R+LP+FLP++ RA GF+ F++G++ +E+FFHCMAGREGL+
Sbjct: 1693 GQQSLEGQRVKFMTSDRSLPAFLPFDFGSRARGFITSSFLSGLKEEEYFFHCMAGREGLV 1752
Query: 380 DTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQ 439
DTAVKT++SGYLQR + K LE LTV YD +VRD+D S++Q +YG+DG D R LT ++
Sbjct: 1753 DTAVKTAKSGYLQRSVTKGLEALTVRYDGSVRDADDSIVQFVYGDDGRDPAHR--LTFEK 1810
Query: 440 FSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPHRTKFTM--DLL 497
L +N + + L P L L + + T T D L
Sbjct: 1811 IDMLLENPAILQRVHAPPSQLGSRPPERRLELAGGHGKNAEAKAQDEDIDTDSTADSDCL 1870
Query: 498 EQWY-------------------QLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISEN 538
Q Y +L DKA +Y + +A T + +
Sbjct: 1871 VQEYGSPLTRLGVTAFQFENDMQRLVDKAVARY-ETLRAAYSRTQDTSRQKKKRKATGHG 1929
Query: 539 LADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTF 598
++++V + T+ + ++K +I++K + PGE VG +AAQSIGEP+TQMTLNTF
Sbjct: 1930 VSEAVARDTRIGLEKDELEKILRVIYHKCCMP---PGEAVGCVAAQSIGEPATQMTLNTF 1986
Query: 599 HFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLP------DMPK----------- 641
H AG G NVT+GIPRLRE+L KTP + IP D P
Sbjct: 1987 HLAGHGAANVTMGIPRLRELLQQGA-VTKTPILYIPLRTAANPREDSPGADPEEREVDQG 2045
Query: 642 --LEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFC 686
L + A +S T I +AD + V + E ++ YQ C
Sbjct: 2046 RVLVRNAGMALRSFTSIGLADCVHSVGV--------EANVCYQPPNC 2084
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 76/127 (59%), Gaps = 1/127 (0%)
Query: 869 LKTDGINVNFISQYR-HLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 927
++ +G N +I + + +D N + ND+ + YGIEAA + RE++ VF+ YGI+V
Sbjct: 2531 IQCEGSNFGWIHRMKDEAIDHNGILTNDVRAVLKYYGIEAARVCLARELERVFSAYGIKV 2590
Query: 928 DPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAP 987
D RHL+L+AD+MTH GT NR G+ + + +M++E + + +A + DSL P
Sbjct: 2591 DYRHLTLIADFMTHDGTLRPFNRLGMAASNAPFLQMSYETSFKFLTEACERAAVDSLSTP 2650
Query: 988 SARVMLG 994
S +++G
Sbjct: 2651 SGSLVVG 2657
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 79/186 (42%), Gaps = 32/186 (17%)
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLT---------------------------- 104
N+ + PP I P PLWTGKQV++ ++ L
Sbjct: 1044 NSRLHMEPPAILWPKPLWTGKQVITCILKTLVDGMAASRFSQCRASGQGKGGLGSGGGDE 1103
Query: 105 -PKDKVIIRHGELLSGILDKKQFGSTQYGLVHAVWDTHVTI-RHGELLSGILDKKQFGST 162
+D + G L+G K G G + V I R+ ELL G+ DK QFG T
Sbjct: 1104 EGEDALNRYEGVNLTG--KAKTPGDAWGGAEDGDKEEEVVIIRNSELLQGVFDKAQFGPT 1161
Query: 163 QYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINK 222
GLVH V+ G A LL LA LF +L+ T D ++R+E + +R ++ +
Sbjct: 1162 AGGLVHCVFLLFGGAAAGLLLQSLAALFCAFLKLRSATTSPADFVMRREGELQRQALVRQ 1221
Query: 223 ARRLGT 228
+ GT
Sbjct: 1222 VIQAGT 1227
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 10 HFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL 69
H + EA++++N +LVPK G PL GLIQD ++G L+ RDTFL + LVY L
Sbjct: 915 HVARTEAAYILNADCHFLVPKSGEPLRGLIQDLCLAGCLLTARDTFLDIHSFQTLVYSGL 974
Query: 70 -CILNT 74
C L++
Sbjct: 975 SCYLDS 980
>gi|302808041|ref|XP_002985715.1| hypothetical protein SELMODRAFT_446351 [Selaginella moellendorffii]
gi|300146624|gb|EFJ13293.1| hypothetical protein SELMODRAFT_446351 [Selaginella moellendorffii]
Length = 1393
Score = 246 bits (629), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 198/659 (30%), Positives = 315/659 (47%), Gaps = 59/659 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLV-YQALCI 71
+ EA LM V + PK+G L QD + S ++ RDTF R ++ + Y +
Sbjct: 528 RTEALTLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRRDTFYDRGQFALMCSYMGDAV 587
Query: 72 LNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQY 131
+ ++ T P I KP+ LWTGKQ+ V+I + + KV + + +K T+
Sbjct: 588 EHIDLPT--PAILKPVELWTGKQLFG-VLIRPSARIKVFLNFV-----VCEKNHKKGTE- 638
Query: 132 GLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKLF 190
D +V ++ EL+ G L K G+ ++ GL + +G + A S ++ LAKL
Sbjct: 639 --TMCPKDGYVFFKNSELICGQLGKGTLGNGSKDGLFTVLLRDYGEQAAASCMNRLAKLS 696
Query: 191 TVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQL 250
++ GF++G+ D+ ++ K I + R AC+ + L ++ L
Sbjct: 697 ARWIGNHGFSIGIDDVQPGSRLTVEKEKRIAEGYR-----ACDK-HISLFNKGQLT---L 747
Query: 251 QEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTV 310
Q + ++I + L+K+ QVC+ E N+ M + G+KGS +
Sbjct: 748 QPGCDAAQTLESEITGE----LNKIREAAGQVCVNE----LHWRNSPLIMSQCGSKGSVI 799
Query: 311 NTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFH 370
N Q+ +GQ + G R R+LP F + +P+A GFV F +G+ EF FH
Sbjct: 800 NISQMIACVGQQSVSGHRAPNGFIERSLPHFPRNDKTPQAKGFVANSFYSGLTATEFIFH 859
Query: 371 CMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVT 430
M GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR+S ++Q++YG+D +D
Sbjct: 860 TMGGREGLVDTAVKTAETGYMSRRLMKALEDLSCQYDGTVRNSSGVIVQLIYGDDSMD-- 917
Query: 431 KRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPHRT 490
S N + +V++ P L P+ ++ +
Sbjct: 918 --------PVSMEGQNGTPLNLDRVLMKAKATCPRGTTPAL--------PPSELWKIVES 961
Query: 491 KFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSI-SENLADSVVKYTKG 549
KF+ D E D RK RK+F P FG++ EN+A +V T
Sbjct: 962 KFSQDGSECSTAFLDSLRKFLRKEFDTISSTRKRLSLPLDDFGNVDDENVAANVSGLT-- 1019
Query: 550 RTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVT 609
+ ++ F + + +PG VG + AQSIGEP TQMTL TFHFAG MN+T
Sbjct: 1020 ---SRQLEVFLNTCIGRYHRKKLDPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNIT 1076
Query: 610 LGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKS-MTRITMADVLEKVKI 667
LG+PR++EI+ A+K I TP + + + + KA R+ K + + + DV + +KI
Sbjct: 1077 LGVPRIKEII-NASKKISTPIITAKLVSEN---DVKAARIVKGRIEKTALGDVAKSIKI 1131
Score = 73.9 bits (180), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 79/152 (51%), Gaps = 2/152 (1%)
Query: 859 LFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKN 918
+ +++ K+ L +G N+ + + D + N I GIEAA II+E++
Sbjct: 1227 VINQEKGKYNLLVEGTNLKAVMGTEGV-DGRETTSNHIFETVEVLGIEAARNGIIKEIQY 1285
Query: 919 VFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASM 977
+G+ +D RH+ L+AD MT+ G + + R G+ ++ S + +FE + + AS+
Sbjct: 1286 TMGSHGMSIDQRHMMLLADVMTYRGEILGITRFGMAKMKDSVLMLASFEKTTDHLFAASV 1345
Query: 978 QGREDSLRAPSARVMLGQECRQGTGLFQLRNR 1009
GR D + S +++G GTGLF++R +
Sbjct: 1346 HGRTDQIEGVSECIIMGIPMPLGTGLFKVRQK 1377
>gi|256083198|ref|XP_002577836.1| RNA polymerase Rpb1 [Schistosoma mansoni]
gi|360044779|emb|CCD82327.1| putative rna polymerase Rpb1 [Schistosoma mansoni]
Length = 1342
Score = 246 bits (629), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 202/657 (30%), Positives = 315/657 (47%), Gaps = 81/657 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM + PK+G PL IQD + + L+L+D FL R + L Q L
Sbjct: 526 RAEAKHLMLSLKNIVSPKNGEPLISPIQDLITATHLLTLKDVFLNRDQACTLAAQLLAGN 585
Query: 73 NT-EIRTLP-PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ + +LP P I P+ LWTGKQ+ + L+P I+ ++ + K S++
Sbjct: 586 HLGRLLSLPKPAILWPVALWTGKQIFGLI---LSPHPSTGIK----VNLRVPTKSMYSSK 638
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQF-GSTQYGLVHAVWDTHGAEHAISLLSCLAKL 189
G D V I++ ELL+G +DKK G ++ + + + +G E + L ++
Sbjct: 639 -GQEMCPNDGFVLIQNSELLAGCVDKKLLGGGSKSSIFYTLLRDYGREACADAMWRLGRI 697
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
+L GF++G+ +++ + +T +I++ A C+ + I+
Sbjct: 698 ALFFLAHRGFSIGLGEVMPSSDLVASKTALISRGF-----ATCD----------DYINQY 742
Query: 250 LQEAYASIPQFRAQ--IDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKG 307
P + ++ L K+ + C + P+N+ M +SG+KG
Sbjct: 743 QMNTLVCNPGCSMEDTLESNISQELSKIRDEAGAACKR----QLHPSNSPLVMAQSGSKG 798
Query: 308 STVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEF 367
S +N Q+ +GQ + GKR +++GR+L F P +P A GFV F +G+ P EF
Sbjct: 799 SFLNISQMIACVGQQVIGGKRVPDVINGRSLVHFPPGSRTPEAKGFVGNSFYSGLSPSEF 858
Query: 368 FFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL 427
FFH M+GREGL DTAVKT+ +GY+QR LVK LE L V YD TVRDS +IQ YG DGL
Sbjct: 859 FFHAMSGREGLTDTAVKTADTGYMQRRLVKFLEDLAVAYDDTVRDSRGDIIQFRYGSDGL 918
Query: 428 DVTKRQYLTDK-QFSFLED----NIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPN 482
D + + TD +F+++ + C ++V ++ L LA+ ++
Sbjct: 919 DPLEME--TDTFPVNFVKEMEHIRTSYDCPHEVGMS---AEELELAVEVVFQ-------- 965
Query: 483 FIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADS 542
L+ + LD + ++ P I +Q + NL +
Sbjct: 966 --------------LDAFRHLDSRLCSAIKEFIHNSVCPRIRKWQEWCTEHANGSNLINQ 1011
Query: 543 VVKYTKG--RTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHF 600
+ T+ R +HV + Y+ +L PG VG L QS+GEP+TQMTL TFHF
Sbjct: 1012 NERLTRTQLRIFLTHVKEKYEK-------ALIEPGTAVGALCGQSVGEPATQMTLKTFHF 1064
Query: 601 AGRGDMNVTLGIPRLREILMMATKAIKTP----SMEIPF---LPDMPKLEKKANRLA 650
AG MN+T G+PR+REI+ A + IKTP ++ PF L KL + RLA
Sbjct: 1065 AGVASMNITQGVPRMREIVNAAAR-IKTPLICVTLTDPFSASLARQVKLSIEPTRLA 1120
Score = 44.3 bits (103), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 941
N+I + G+EAA RV+I E+ V +G+EV+ RH+ L+AD MT+
Sbjct: 1246 NNILEVEQVLGVEAARRVVIDELLAVMEGHGVEVNVRHVMLLADVMTN 1293
>gi|307166498|gb|EFN60583.1| DNA-directed RNA polymerase III subunit RPC1 [Camponotus floridanus]
Length = 1384
Score = 246 bits (628), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 206/670 (30%), Positives = 314/670 (46%), Gaps = 90/670 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA L+ S + P++G L QD + G L+ +D F R + V ALC L
Sbjct: 508 KAEALVLLANKSNLVTPRNGDLLIAATQDFITGGYLLTQKDVFFDREQ----VKLALCFL 563
Query: 73 N----TEIRTLP-PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
+ TLP P I KP+ LWTGKQ+ S +I P + ++ + K G
Sbjct: 564 AGADASLTVTLPIPAILKPVKLWTGKQIFSLII---RPSPECPVK--------ANLKTKG 612
Query: 128 ST-QYGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSC 185
T G + D++V IR+ ELL+G +D GS ++ + + + G ++A + +
Sbjct: 613 KTYTTGEEFCINDSYVIIRNSELLAGAMDVSTLGSGSKQNIFYILLRDWGEDYATASMWR 672
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEI 245
L +L + G ++G+ D++ Q + R I+N + C+ E
Sbjct: 673 LTRLTNHFNFDRGISIGLSDLIASQGLVQARESILNTHY-----SKCH----------EY 717
Query: 246 ISSQLQEAYASIPQFRAQIDRQYKSL--LDKVTNNINQVCLPEGLIEPFPANNLQFMVES 303
I Q AS P + + K L L + +N+ + CL E N M
Sbjct: 718 IKLMEQGQLASQPGCSVEETLETKILNELSVIRDNVGKACLKE----LHRTNTPLTMALC 773
Query: 304 GAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQ 363
G+KGS +N Q+ +GQ + G R R LP L +P GFV F +G+
Sbjct: 774 GSKGSYINVSQMIGCVGQQAINGHRVPNGFENRALPHVLAQLRTPDVKGFVKNSFYSGLG 833
Query: 364 PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYG 423
+EF+FH M GREGL DTAVKT+ +GY+QR L+K LE L VHYDMTVR+S +IQ+ YG
Sbjct: 834 SKEFYFHAMGGREGLTDTAVKTADTGYMQRRLIKSLEDLCVHYDMTVRNSMRDIIQICYG 893
Query: 424 EDGLDVTKRQYLTDK----QFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSG 479
D LD T Y+ K + + D+++ YK + PL ++
Sbjct: 894 GDKLDPT---YMEGKDCPVDYKRVYDHVRAKLPYK------NEEPLDAVSVM-------- 936
Query: 480 KPNFIFSPHRTKFTMDLL--EQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISE 537
T D+L E++ L ++ +K+ + K Q + AH+ +
Sbjct: 937 -----------SATEDMLSTEEYDCLSEEFKKELVEFMKTVAQKI-------AHYRQNIK 978
Query: 538 NLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNT 597
+ A V++ R S + +F K + ++ PG VG LAAQSIGEP T MTL T
Sbjct: 979 SKASVVLQLE--RLTVSQLVEFIHTCKEKYMRAVIEPGTAVGALAAQSIGEPGTSMTLKT 1036
Query: 598 FHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFL--PDMPKLEKKANRLAKSMTR 655
FHFAG MN+T G+PR++EI+ A+ I TP + + D E+ R+ K+ +
Sbjct: 1037 FHFAGVASMNITQGVPRIKEII-NASPKISTPIITATLVDGTDFEGAERVKARIQKTTLK 1095
Query: 656 ITMADVLEKV 665
+ D +E+V
Sbjct: 1096 -EIVDCIEQV 1104
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 902 TYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFI 960
T GIEAA I+ E+K+V +GI VD RHL L+AD MT G + + R G+ ++ S +
Sbjct: 1240 TLGIEAARTTIMAEIKSVMENHGISVDRRHLILLADLMTCRGEVLGITRQGLDKMKESVL 1299
Query: 961 QKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+FE + + ++ G+ D++ S +++G GTG+F+L
Sbjct: 1300 NLASFEKTADHLFDSAYYGQRDAICGVSESIIMGIPIPVGTGMFKL 1345
>gi|332024635|gb|EGI64832.1| DNA-directed RNA polymerase III subunit RPC1 [Acromyrmex echinatior]
Length = 1988
Score = 245 bits (626), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 205/663 (30%), Positives = 308/663 (46%), Gaps = 76/663 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA L+ S + P++G L QD + L+ +DTFL + E L ALC+L
Sbjct: 1127 RAEALVLLANKSNLVTPRNGDLLIAATQDFITGAYLLTQKDTFL-QIEQARL---ALCLL 1182
Query: 73 -----NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
+ ++ PP I KP LWTGKQ+ S +IIR + S + K G
Sbjct: 1183 AGSDASMKVTLPPPAIIKPARLWTGKQIFS-----------LIIRPNKECSVKANLKAKG 1231
Query: 128 ST-QYGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSC 185
T G + D++V IR+ ELL+G +DK GS ++ + + + G + A + +
Sbjct: 1232 KTYTNGKEFCINDSYVIIRNSELLAGTMDKSILGSGSKQNIFYILLRDWGEDVATAAMWR 1291
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEI 245
L ++ + G +LG+ D++ Q R + +I+N + CN E
Sbjct: 1292 LTRITNHFNFERGISLGIGDLIPSQGLLRAKERILNTHY-----STCN----------EY 1336
Query: 246 ISSQLQEAYASIPQFRAQIDRQYKSL--LDKVTNNINQVCLPEGLIEPFPANNLQFMVES 303
I Q P + + + L L + +++ + CL E P N M
Sbjct: 1337 IQLMEQGHLVCQPGCSEEETLETRILNELSVIRDDVGKACLKE----LHPTNTPLTMALC 1392
Query: 304 GAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQ 363
G+KGS +N Q+ +GQ + G R R LP L P A GFV+ F +G+
Sbjct: 1393 GSKGSFINISQMIACVGQQAINGCRVPDGFENRALPHVLTRSKKPDAKGFVENSFYSGLV 1452
Query: 364 PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYG 423
+EF+FH M GREGL DTAVKT+ +GY+QR L+K LE L +HYDMTVR+S +IQ YG
Sbjct: 1453 SKEFYFHAMGGREGLTDTAVKTAETGYMQRRLIKSLEDLCIHYDMTVRNSMRDMIQTTYG 1512
Query: 424 EDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNF 483
DGLD T Y+ K D + + + + + PL A ++ T + +
Sbjct: 1513 GDGLDPT---YMEGKDCPV--DYERVYEHVRAKMPYITEEPLDYASVINATKEMLRSEEY 1567
Query: 484 IFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSV 543
K D L + +L K +K Q +IS S++ L
Sbjct: 1568 ECLSEEFK---DELTSFLKL------KVARKIAFYRQNIISN-------SSVTSQLE--- 1608
Query: 544 VKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGR 603
R S + +F K + + PG VG LAAQSIGEP TQMTL TFHFAG
Sbjct: 1609 ------RFTVSQLVEFIHTCKEKYMRAKIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGV 1662
Query: 604 GDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLE 663
MN+T G+PR++EI+ A+ I TP + + D + A ++ + + T+ DV E
Sbjct: 1663 AAMNITQGVPRIKEII-NASPKISTPIITATLINDAN--SEIAEQVKARIEKTTLGDVSE 1719
Query: 664 KVK 666
++
Sbjct: 1720 YIE 1722
Score = 73.2 bits (178), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 78/147 (53%), Gaps = 2/147 (1%)
Query: 864 ESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
+SK L +G N + R +L K N+ + T GIEAA I+ E+K+V +
Sbjct: 1824 KSKFTLFVEGDNFREVMATRGILG-EKTKSNNTIEVFKTLGIEAARTTIMSEIKSVMENH 1882
Query: 924 GIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGRED 982
GI +D RHL L+AD MT G + + R G+ ++ S + +FE + + A+ G++D
Sbjct: 1883 GISIDCRHLMLLADLMTSRGEVLGITRQGLAKMKESVLNLASFEKTADHLFDAAYYGQKD 1942
Query: 983 SLRAPSARVMLGQECRQGTGLFQLRNR 1009
+ S +++G GTG+F+L ++
Sbjct: 1943 VISGVSESIIMGIPVPLGTGIFKLLHK 1969
>gi|120561225|gb|ABM26998.1| RNA polymerase II largest subunit, partial [Allomyces macrogynus]
Length = 1008
Score = 245 bits (626), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 158/420 (37%), Positives = 222/420 (52%), Gaps = 37/420 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAE L V Q + P+ P+ G++QD + K + RDTF+ + MNL+ + +
Sbjct: 422 KAEIQQLCMVPLQIISPQSNKPVMGIVQDTLCGITKFTRRDTFMDKNMVMNLL---MWVP 478
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N + PP I KP PLWTGKQ+LS VI PK I H S D + ST
Sbjct: 479 NWDGNVPPPAIMKPKPLWTGKQILSLVI----PKVNCITHH----STHPDDE---STDI- 526
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ DT V + GELL+GI+ KK G+ GLVH W HG E A +LL+ +
Sbjct: 527 ---SPGDTRVIVEDGELLAGIVCKKTVGAAAGGLVHVSWMEHGPEAAKALLNGCQTIVNY 583
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + + KII AR + A L + L+E
Sbjct: 584 WLLHNGFSIGIGDTIADDATMAQINKIIASARDTVKQTIHTAQRGQLKA---MTGMTLRE 640
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFP-ANNLQFMVESGAKGSTVN 311
F AQ++R ++K + + F +NN++ MV SG+KGS +N
Sbjct: 641 T------FEAQVNRALNEAVNKAGS---------AAAKSFKVSNNVKQMVVSGSKGSNIN 685
Query: 312 TMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHC 371
Q+S +GQ +EGKR R+LP F+ + SP + GFV+ ++ G+ PQEFFFH
Sbjct: 686 ISQMSACVGQQNVEGKRIPFGFQYRSLPHFVKDDYSPESRGFVENSYLRGLSPQEFFFHA 745
Query: 372 MAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTK 431
M GREGLIDTAVKT+ +GY+QR L+K LE + V YD TVR++ +IQ YGEDG+D T+
Sbjct: 746 MGGREGLIDTAVKTAETGYIQRRLIKALEDIMVKYDGTVRNAQGHIIQFAYGEDGMDGTR 805
>gi|4092885|gb|AAD12605.1| RNA polymerase II largest subunit [Antonospora locustae]
Length = 1553
Score = 245 bits (626), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 211/711 (29%), Positives = 331/711 (46%), Gaps = 111/711 (15%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S+ KAE S LM VS + P+ P+ G+IQD ++ +L+ + F+ R E+ NLVY +
Sbjct: 461 SYNSKAELSELMLVSKHIISPQSNKPVMGIIQDTLLGVCRLTSKGVFIKREEFCNLVYAS 520
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGS 128
+ I+ P I +P L+TGKQ+ S + PK L+ DK
Sbjct: 521 NLVARANIK---PAIARPKILYTGKQLFSLTL----PK----------LNFFRDK----- 558
Query: 129 TQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAK 188
V I G LL+G++ KK G+ Q L+H + + +G E + L K
Sbjct: 559 -------------VVIMDGVLLNGVICKKSVGTAQGSLIHIIANDYGHEEITRFIDSLQK 605
Query: 189 LFTVYLQRVG-FTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIIS 247
L + YL + F++G+ D + E + + +R +G A + I
Sbjct: 606 LISTYLTLISTFSVGIGDTISSPE------TMAHISRAIGDAKA--------EVKQLIYD 651
Query: 248 SQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKG 307
S+ + + +P Q +S ++ N + + N L+ M+++G+KG
Sbjct: 652 SRRRGSLEKLPGMNLQ--ETLESKINLALNKARDISGTRAVESLNHLNGLKQMLKAGSKG 709
Query: 308 STVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEF 367
S +N QI+ +GQ +E KR RTLP F+ + P + GFV +++G+ P+EF
Sbjct: 710 SYINISQITSCVGQQNIESKRIPFGFRQRTLPHFVKNDYGPESRGFVTNSYLSGLNPEEF 769
Query: 368 FFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL 427
FFH M GREGLIDTA KT+ +GY+QR +VK +E + YD +VR S ++ Q +YGED
Sbjct: 770 FFHAMGGREGLIDTACKTAETGYIQRRIVKAMEDARIEYDGSVRGSS-TVYQFMYGEDNF 828
Query: 428 DVTKRQYLTDKQFSFLE--DNIKW-ICSYKV---------ILNLLKKH------------ 463
D T YL + F IK +CS+K+ + +++K
Sbjct: 829 DST---YLETQAFPVESRCSEIKLSVCSFKLHGMLENDSALQAIMEKEDRIFEMDACKYG 885
Query: 464 ------PLSLALLLLLTFKSSGKPNFIFSPH---RTKFT-MDLLEQWYQLDDKARKKYRK 513
P ++A L+ + P+ R K + +D + Q+Y + K +
Sbjct: 886 GRDYTLPFNIARLVATAQRDYKVKVSDVDPYAVVRLKESLLDFVSQYYCMQKKMYMHEKS 945
Query: 514 -KFKACPQ----PLISTFQPDAHFGSISENLA-DSVV-----------KYTKGRTDASHV 556
K C Q + S D S S N++ DS V K R V
Sbjct: 946 PKTTLCEQHKETEVNSINVVDNALQSTSPNISEDSFVHAFIRSCLRIKKVINYRISTLGV 1005
Query: 557 DKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLR 616
+ + I K + + + E VG LAAQSIGEP+TQMTLNTFH+AG +T G+PRL+
Sbjct: 1006 EWIANEIKKKFVRGIISTNEMVGTLAAQSIGEPATQMTLNTFHYAGVAQA-ITQGVPRLK 1064
Query: 617 EILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKI 667
EI+ +A K I+TPS +I P ++A ++A + I + V ++KI
Sbjct: 1065 EIINVA-KNIRTPSHKIYLKPG--STIEQAKKVASEIEYINIEMVCSEIKI 1112
Score = 69.7 bits (169), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 72/144 (50%), Gaps = 2/144 (1%)
Query: 859 LFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKN 918
L E+E + +L+TDG N+ + +L NK+Y ND+ + GIEA I+RE++N
Sbjct: 1233 LLRERE-EWILQTDGKNLKQLLLVEDIL-ANKVYCNDLLEVYEVLGIEAVRECILRELRN 1290
Query: 919 VFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQ 978
V G V+ RHL L+ D MT G R +++ +FE +E + +AS
Sbjct: 1291 VIEAEGSYVNFRHLYLLCDVMTLKGLRGITRHGANRAATGALKRCSFEETVEILLEASCF 1350
Query: 979 GREDSLRAPSARVMLGQECRQGTG 1002
+ R + +MLGQ GTG
Sbjct: 1351 AERNYCRGVTENIMLGQLAPIGTG 1374
>gi|316997009|dbj|BAJ52632.1| RNA polymerase III largest subunit [Paramecium tetraurelia]
Length = 899
Score = 245 bits (626), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 199/656 (30%), Positives = 305/656 (46%), Gaps = 127/656 (19%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
++EA LM+V K G L L+QD + + ++ +D F +R ++M A
Sbjct: 11 RSEALILMDVKKNLKTIKSGESLVCLLQDFLTTAWLITNKDVFYSREQFMQFC-AAFSDS 69
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N +I PTI KP LWTGKQV++ +++ K ++++ L+ K+ + + G
Sbjct: 70 NEQIDLPAPTILKPKQLWTGKQVINALLVP-NRKTRLVLN--------LEAKESNAFK-G 119
Query: 133 LVHAVW----DTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAK 188
+ +W D +V EL+ G + KK G+++ GL +A+ + + A S++ AK
Sbjct: 120 KLDYLWMDPGDGYVVFDKCELVCGNIGKKVLGASKLGLFYALIRDNSTQIAASVMQRFAK 179
Query: 189 LFTVYLQRVGFTLGVRDIL--------VRQERDRKRTKIINKARRLGTEAACNALGLPLD 240
L + ++ G T+G+ D++ + Q ++ + + R L +D
Sbjct: 180 LSSRWISHYGMTIGIGDVMAPKSLIEQIHQSTEQSYLQCKHYQRSL------------ID 227
Query: 241 TDPEIISSQLQEAYA--SIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQ 298
DP + Q EA ++ R Q+ + + L N +
Sbjct: 228 ADPGLTVEQTLEAKVNKTLSDVREQVGSKCQEQLK-------------------SDNKVL 268
Query: 299 FMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYE--------VSPRA 350
M GAKGS VN Q+ +GQ + GKR +GRTLP F + P+A
Sbjct: 269 IMYLCGAKGSNVNVAQMIGCVGQQVISGKRVPEGFTGRTLPHFKDCGDRYPNLDILHPKA 328
Query: 351 GGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTV 410
GFV F TG+ EF+FH MAGREGL DTAVKT+ +GY+QR LVK LE L + YD+TV
Sbjct: 329 KGFVKNSFYTGMDAIEFYFHNMAGREGLTDTAVKTATTGYMQRRLVKMLEDLHIAYDLTV 388
Query: 411 RDSDL-SLIQVLYGEDGLD---------VTKRQYLTDKQFSFLEDNIKWICSYKVILNLL 460
R D ++Q YGEDGLD V K Q L F+ L N +++LN
Sbjct: 389 RSCDTKEIVQFRYGEDGLDPLAVEDANEVIKLQNLLTNSFTVLRKN-------QILLN-- 439
Query: 461 KKHPLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQ 520
K+H L L + I KF LE + +K +K+ + FK+ Q
Sbjct: 440 KEHMLIKLDELFM----------IIEERHKKF----LENYEATYEKEKKRVQALFKSTNQ 485
Query: 521 PLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGV 580
+SE ++ S +++F M+ PG +VG
Sbjct: 486 -------------QVSEKQLQWFIR--------SWMERFLTMVM--------APGTSVGP 516
Query: 581 LAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFL 636
+ +QSIGEP+TQMTL TFH AG M++T G+PRL EI+ A+K IKTP + + +
Sbjct: 517 ITSQSIGEPATQMTLKTFHSAGVAGMSITQGVPRLNEII-NASKEIKTPQINVKLI 571
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 68/122 (55%), Gaps = 1/122 (0%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D + N I + S GIEAA + I+ EV + I +D RH+ L+A+ MT G
Sbjct: 754 IDWKRTVSNHIMEIQSALGIEAARQSIVNEVYTTMQSHSISIDIRHILLLAELMTFKGRI 813
Query: 946 VAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
+ R GI +L S + +FE ++ A++QG++DS+ S RV++GQ QGTG+F
Sbjct: 814 LGFTRQGIDQLKNSALMLASFEKTMDVFFNAAIQGKQDSMNGASQRVIIGQNVPQGTGMF 873
Query: 1005 QL 1006
L
Sbjct: 874 DL 875
>gi|74830400|emb|CAI39062.1| DNA-directed RNA polymerase III largest subunit [Paramecium
tetraurelia]
Length = 1368
Score = 244 bits (624), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 199/656 (30%), Positives = 305/656 (46%), Gaps = 127/656 (19%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
++EA LM+V K G L L+QD + + ++ +D F +R ++M A
Sbjct: 480 RSEALILMDVKKNLKTIKSGESLVCLLQDFLTTAWLITNKDVFYSREQFMQFC-AAFSDS 538
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N +I PTI KP LWTGKQV++ +++ K ++++ L+ K+ + + G
Sbjct: 539 NEQIDLPAPTILKPKQLWTGKQVINALLVP-NRKTRLVLN--------LEAKESNAFK-G 588
Query: 133 LVHAVW----DTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAK 188
+ +W D +V EL+ G + KK G+++ GL +A+ + + A S++ AK
Sbjct: 589 KLDYLWMDPGDGYVVFDKCELVCGNIGKKVLGASKLGLFYALIRDNSTQIAASVMQRFAK 648
Query: 189 LFTVYLQRVGFTLGVRDIL--------VRQERDRKRTKIINKARRLGTEAACNALGLPLD 240
L + ++ G T+G+ D++ + Q ++ + + R L +D
Sbjct: 649 LSSRWISHYGMTIGIGDVMAPKSLIEQIHQSTEQSYLQCKHYQRSL------------ID 696
Query: 241 TDPEIISSQLQEAYA--SIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQ 298
DP + Q EA ++ R Q+ + + L N +
Sbjct: 697 ADPGLTVEQTLEAKVNKTLSDVREQVGSKCQEQLKS-------------------DNKVL 737
Query: 299 FMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYE--------VSPRA 350
M GAKGS VN Q+ +GQ + GKR +GRTLP F + P+A
Sbjct: 738 IMYLCGAKGSNVNVAQMIGCVGQQVISGKRVPEGFTGRTLPHFKDCGDRYPNLDILHPKA 797
Query: 351 GGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTV 410
GFV F TG+ EF+FH MAGREGL DTAVKT+ +GY+QR LVK LE L + YD+TV
Sbjct: 798 KGFVKNSFYTGMDAIEFYFHNMAGREGLTDTAVKTATTGYMQRRLVKMLEDLHIAYDLTV 857
Query: 411 RDSDL-SLIQVLYGEDGLD---------VTKRQYLTDKQFSFLEDNIKWICSYKVILNLL 460
R D ++Q YGEDGLD V K Q L F+ L N +++LN
Sbjct: 858 RSCDTKEIVQFRYGEDGLDPLAVEDANEVIKLQNLLTNSFTVLRKN-------QILLN-- 908
Query: 461 KKHPLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQ 520
K+H L L + I KF LE + +K +K+ + FK+ Q
Sbjct: 909 KEHMLIKLDELFM----------IIEERHKKF----LENYEATYEKEKKRVQALFKSTNQ 954
Query: 521 PLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGV 580
+SE ++ S +++F M+ PG +VG
Sbjct: 955 -------------QVSEKQLQWFIR--------SWMERFLTMVM--------APGTSVGP 985
Query: 581 LAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFL 636
+ +QSIGEP+TQMTL TFH AG M++T G+PRL EI+ A+K IKTP + + +
Sbjct: 986 ITSQSIGEPATQMTLKTFHSAGVAGMSITQGVPRLNEII-NASKEIKTPQINVKLI 1040
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 68/122 (55%), Gaps = 1/122 (0%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D + N I + S GIEAA + I+ EV + I +D RH+ L+A+ MT G
Sbjct: 1223 IDWKRTVSNHIMEIQSALGIEAARQSIVNEVYTTMQSHSISIDIRHILLLAELMTFKGRI 1282
Query: 946 VAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
+ R GI +L S + +FE ++ A++QG++DS+ S RV++GQ QGTG+F
Sbjct: 1283 LGFTRQGIDQLKNSALMLASFEKTMDVFFNAAIQGKQDSMNGASQRVIIGQNVPQGTGMF 1342
Query: 1005 QL 1006
L
Sbjct: 1343 DL 1344
>gi|302785289|ref|XP_002974416.1| hypothetical protein SELMODRAFT_442419 [Selaginella moellendorffii]
gi|300158014|gb|EFJ24638.1| hypothetical protein SELMODRAFT_442419 [Selaginella moellendorffii]
Length = 1348
Score = 244 bits (624), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 200/663 (30%), Positives = 314/663 (47%), Gaps = 63/663 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLV-YQALCI 71
+ EA LM V + PK+G L QD + S ++ RDTF R ++ + Y +
Sbjct: 528 RTEALTLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRRDTFYDRGQFALMCSYMGDAV 587
Query: 72 LNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQY 131
+ ++ T P I KP+ LWTGKQ+ V+I + + KV + + +K T+
Sbjct: 588 EHIDLPT--PAILKPVELWTGKQLFG-VLIRPSARIKVFLNFV-----VCEKNHKKGTE- 638
Query: 132 GLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKLF 190
D +V ++ EL+ G L K G+ ++ GL + +G + A S ++ LAKL
Sbjct: 639 --TMCPKDGYVFFKNSELICGQLGKGTLGNGSKDGLFTVLLRDYGEQAAASCMNRLAKLR 696
Query: 191 TVYLQRV----GFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEII 246
Y R GF++G+ D+ ++ K I + R AC+ + L ++
Sbjct: 697 HSYFARWIGNHGFSIGIDDVQPGSRLTVEKEKRIAEGYR-----ACDK-HISLFNKGQLT 750
Query: 247 SSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAK 306
LQ + ++I + L+K+ QVC+ E P M + G+K
Sbjct: 751 ---LQPGCDAAQTLESEITGE----LNKIREAAGQVCVNELHWRNSPL----IMSQCGSK 799
Query: 307 GSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQE 366
GS +N Q+ +GQ + G R R+LP F + +P+A GFV F +G+ E
Sbjct: 800 GSVINISQMIACVGQQSVSGHRAPNGFIERSLPHFPRNDKTPQAKGFVANSFYSGLTATE 859
Query: 367 FFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDG 426
F FH M GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR+S ++Q++YG+D
Sbjct: 860 FIFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSCQYDGTVRNSSGVIVQLIYGDDS 919
Query: 427 LDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFS 486
+D S N + +V++ P L P+ ++
Sbjct: 920 MD----------PVSMEGQNGTPLNLDRVLMKAKATCPRGATPAL--------PPSELWK 961
Query: 487 PHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSI-SENLADSVVK 545
+KF+ D E D RK RK+F P FG++ EN+A +V
Sbjct: 962 IVESKFSQDGSECSMAFLDSLRKFLRKEFDTISSTRKRLSLPLEDFGNLDDENVAANVSG 1021
Query: 546 YTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGD 605
T + ++ F + + +PG VG + AQSIGEP TQMTL TFHFAG
Sbjct: 1022 LT-----SRQLEVFLNTCIGRYHRKKLDPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVAS 1076
Query: 606 MNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKS-MTRITMADVLEK 664
MN+TLG+PR++EI+ A+K I TP + + + + KA R+ K + + + DV +
Sbjct: 1077 MNITLGVPRIKEII-NASKKISTPIITAKLVSEN---DVKAARIVKGRIEKTALGDVAKS 1132
Query: 665 VKI 667
+KI
Sbjct: 1133 IKI 1135
Score = 46.6 bits (109), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 859 LFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKN 918
+ +++ K+ L +G N+ + + D + N I GIEAA II+E++
Sbjct: 1231 VINQEKGKYNLLVEGTNLKAVMGTEGV-DGRETTSNHIFETVEVLGIEAARNGIIKEIQY 1289
Query: 919 VFAVYGIEVDPRHLSLVADYMTHSGTY 945
+G+ +D RH+ L+AD MT+ G +
Sbjct: 1290 TMGSHGMSIDQRHMMLLADVMTYRGEF 1316
>gi|401409792|ref|XP_003884344.1| putative DNA-directed RNA polymerase II largest subunit [Neospora
caninum Liverpool]
gi|325118762|emb|CBZ54313.1| putative DNA-directed RNA polymerase II largest subunit [Neospora
caninum Liverpool]
Length = 1901
Score = 244 bits (624), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 153/443 (34%), Positives = 247/443 (55%), Gaps = 36/443 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V Q + P+ P+ G++QD +++ +K + RDTFLT+ N++ Q I
Sbjct: 505 RAEIKHLMKVPKQIVSPQGNKPVMGIVQDSLLAVSKFTRRDTFLTKPMVYNILLQ---IP 561
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVII------NLTPKDKVIIRHGELLSGILDKKQF 126
PP I +P+PLWTGKQ+ S ++ K ++ ++ ++ +G++D+K+
Sbjct: 562 YWSGVVPPPAIVRPVPLWTGKQLFSLLLFFDSSVSGGNTKTRINMQR-DVGAGLVDRKK- 619
Query: 127 GSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCL 186
L + D V IR GELL+G + KK GS L+H +W G E LS L
Sbjct: 620 ----ENLFISERDERVIIRQGELLAGKICKKIVGSASGSLIHLLWLEAGPERTKDFLSTL 675
Query: 187 AKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEII 246
KL +L GFT+G +DI+ +E + K I+++A++ + A L++ P
Sbjct: 676 QKLTNYWLLHQGFTVGCKDIIANEETNEKVRDILDQAKKEVDKLIRLAHRGRLESQP--- 732
Query: 247 SSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAK 306
L+E+ F A+++++ S ++ + + L E +NN+ MV +G+K
Sbjct: 733 GKSLRES------FEARVNKELNSARER-SGKVAAESLDE-------SNNIMAMVLAGSK 778
Query: 307 GSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQE 366
GST+N QI +GQ +EGKR + R+LP F ++ SP++ GFV+ +++G++P E
Sbjct: 779 GSTINISQIMACVGQQNVEGKRIPFGFNERSLPHFHKFDYSPQSRGFVENSYLSGLEPHE 838
Query: 367 FFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDG 426
FFH M GREG+IDTA KTS +GY+QR L+K +E + V+YD TVR+S ++Q LYGEDG
Sbjct: 839 LFFHAMGGREGIIDTACKTSETGYIQRRLMKAMEDVMVYYDRTVRNSICEVLQFLYGEDG 898
Query: 427 LDVTKRQYLTDKQFSFLE-DNIK 448
+ +Y+ D+ + DN K
Sbjct: 899 M---SGEYVEDQTVELMTLDNEK 918
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 72/108 (66%), Gaps = 5/108 (4%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
+LA+ GE VG +AAQSIGEP+TQMTLNTFHFAG G NVTLG+PRL+E++ +A K +KTP
Sbjct: 1086 ALAHAGECVGAIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINVA-KQVKTP 1144
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEP 677
S+ + ++ +++A + + T L++V + + P+P
Sbjct: 1145 SLTVYLQDEIAMDQERAKDVQTHLEHTT----LDRVTVVSQVIYDPDP 1188
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 86/154 (55%), Gaps = 2/154 (1%)
Query: 862 EKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 921
E+ + +L TDG N+ + ++D + ND+ + GIEA R ++RE++ V +
Sbjct: 1336 ERTNNWVLDTDGCNLEDVLPI-PMVDHARTTSNDMTEIFHVLGIEAVRRALLRELRAVIS 1394
Query: 922 VYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGR 980
G V+ RHL+++ D MT G +++ R+GI R++ + K +FE +E + +A++
Sbjct: 1395 FDGSYVNYRHLAILCDTMTQKGYLMSITRHGINRIDKGPLMKCSFEETVEILMEAAVFAE 1454
Query: 981 EDSLRAPSARVMLGQECRQGTGLFQLRNREKKKK 1014
D L+ + +M+GQ C GTG F + E+K K
Sbjct: 1455 ADHLKGVTENIMMGQLCPLGTGYFDVLIDEEKLK 1488
>gi|68076569|ref|XP_680204.1| RNA polymerase I [Plasmodium berghei strain ANKA]
gi|56501099|emb|CAH97287.1| RNA polymerase I, putative [Plasmodium berghei]
Length = 2577
Score = 244 bits (624), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 151/408 (37%), Positives = 219/408 (53%), Gaps = 60/408 (14%)
Query: 259 QFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCL 318
F +D ++ L +V++ N + E L+ F N M+ +GAKGS VN I +
Sbjct: 1523 NFDGLLDSLFQPYLCRVSSGTNNLITMENLMNKFLDNGFSNMIFTGAKGSKVNYSMICGM 1582
Query: 319 LGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGL 378
L Q LEGKR M SG+TLPSF Y+ R+ G + F+ G++PQE+FFHCM+GREGL
Sbjct: 1583 LDQQYLEGKRVPRMRSGKTLPSFHKYDYGARSCGLITDCFLEGLRPQEYFFHCMSGREGL 1642
Query: 379 IDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDK 438
IDTAVKT++SGY+QRCL+K +E + +HYD TVR+ D S+IQ LYGEDG+D +K YL
Sbjct: 1643 IDTAVKTAKSGYIQRCLIKAMESIVLHYDGTVRNEDNSIIQFLYGEDGIDPSKTAYL--- 1699
Query: 439 QFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLE 498
+ D I + S+ LN G I + +
Sbjct: 1700 --NIPSDLINYNISFSKYLNY-------------------GSDKLILNNQK--------- 1729
Query: 499 QWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRT-DASHVD 557
+ ++ +K PLI + P + GSIS+N + K + + ++ +
Sbjct: 1730 -LFIKNENNKKN--------EDPLICQYNPYTYIGSISDNYNIKLNNILKKKKFNLTNYN 1780
Query: 558 KFYD-----MIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGI 612
+ +D ++ K SL +PGE++G+L AQS GEP+TQMTLNTFH AG NVT+GI
Sbjct: 1781 ENFDSLSSSLLRSKYFHSLCSPGESIGILVAQSFGEPATQMTLNTFHLAGTE--NVTMGI 1838
Query: 613 PRLREILMMATKAIKTPSMEIPFLPDMPKLEKK----ANRLAKSMTRI 656
PRL+EI + +K P + +P KLE+K N++ +T I
Sbjct: 1839 PRLKEIF-LTSKLTSKPMIYVPI-----KLEEKYINNPNKIKNYITNI 1880
Score = 103 bits (258), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 69/118 (58%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D KLY NDI+ + TYGIEA I +E+K VF YGI++D RHLS ++D+MTH+G
Sbjct: 2449 IDKTKLYCNDIYTIVKTYGIEAGRLCITKELKKVFEAYGIKIDFRHLSFISDFMTHTGDL 2508
Query: 946 VAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGL 1003
+ NR GI + KM+FE + Q +Q D L PS+ + G+ + GT +
Sbjct: 2509 KSFNRYGINAYRNVFHKMSFECATSFMIQGCIQNSIDYLSTPSSSLFFGKHIKVGTNV 2566
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 100/211 (47%), Gaps = 14/211 (6%)
Query: 6 QNASHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLV 65
+N F KA++ + S+ KDG+ SG D IS + + + ++ Y++
Sbjct: 861 KNTFFFSKAKSRNISGSSN----TKDGNMNSG-DNDKSISNSFRGI-NAKISNYSYIDPY 914
Query: 66 YQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKV--IIRHG-----ELLS 118
L N I+T PTI P LWTGKQ++S+++ + + + +HG E
Sbjct: 915 ASNLNRTNFTIKTEEPTILFPKKLWTGKQLISSILKTIINELAIETYNKHGDNSFMENFK 974
Query: 119 GI-LDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAE 177
GI K + + + + I++ ELL G+LDK FG++ VH ++ G +
Sbjct: 975 GINYVAKAKTDPELWSFDPIKECEIIIKNSELLQGVLDKLHFGASSNSFVHLCYELFGPK 1034
Query: 178 HAISLLSCLAKLFTVYLQRVGFTLGVRDILV 208
A +L C +LF +LQ G +L + D ++
Sbjct: 1035 SAAVMLDCFGRLFISFLQLRGTSLSLYDFIL 1065
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA+ LMN + KDGSPL GL QD ++ G L+ +TFL EY NL+ C L
Sbjct: 798 RAEATHLMNSDFLFTSFKDGSPLRGLAQDFILGGLHLTSLETFLNYDEYCNLL---QCSL 854
Query: 73 NTEIR 77
N +R
Sbjct: 855 NGLLR 859
>gi|237833803|ref|XP_002366199.1| DNA-directed RNA polymerase II largest subunit, putative
[Toxoplasma gondii ME49]
gi|211963863|gb|EEA99058.1| DNA-directed RNA polymerase II largest subunit, putative
[Toxoplasma gondii ME49]
Length = 1892
Score = 244 bits (624), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 149/421 (35%), Positives = 237/421 (56%), Gaps = 32/421 (7%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V Q + P+ P+ G++QD +++ +K + RDTFLT+ NL+ Q I
Sbjct: 505 RAEIKHLMKVPKQIVSPQGNKPVMGIVQDSLLAVSKFTRRDTFLTKPMVYNLLLQ---IP 561
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVII------NLTPKDKVIIRHGELLSGILDKKQF 126
PP I P+PLWTGKQ+ S ++ K ++ ++ ++ +G++D+K+
Sbjct: 562 YWSGVVPPPAILHPVPLWTGKQLFSLLLFFDSSVSGGNTKTRINMQR-DVGAGLVDRKK- 619
Query: 127 GSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCL 186
L + D V IR GELL+G + KK GS L+H +W G E LS L
Sbjct: 620 ----ENLFLSERDERVIIRQGELLAGKICKKIVGSASGSLIHLLWLEAGPERTKDFLSTL 675
Query: 187 AKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEII 246
KL +L GFT+G +DI+ +E + K I+++A++ + A L++ P
Sbjct: 676 QKLTNYWLLHQGFTVGCKDIIANEETNEKVRDILDQAKKEVDKLIRLAHRGRLESQP--- 732
Query: 247 SSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAK 306
L+E+ F A+++++ S ++ + + L E +NN+ MV +G+K
Sbjct: 733 GKSLRES------FEARVNKELNSARER-SGKVAAESLDE-------SNNIMAMVLAGSK 778
Query: 307 GSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQE 366
GST+N QI +GQ +EGKR + R+LP F ++ SP++ GFV+ +++G++P E
Sbjct: 779 GSTINISQIMACVGQQNVEGKRIPFGFNERSLPHFHKFDYSPQSRGFVENSYLSGLEPHE 838
Query: 367 FFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDG 426
FFH M GREG+IDTA KTS +GY+QR L+K +E + V+YD TVR+S ++Q LYGEDG
Sbjct: 839 LFFHAMGGREGIIDTACKTSETGYIQRRLMKAMEDVMVYYDRTVRNSICEVLQFLYGEDG 898
Query: 427 L 427
+
Sbjct: 899 M 899
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 72/108 (66%), Gaps = 5/108 (4%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
+LA+ GE VG +AAQSIGEP+TQMTLNTFHFAG G NVTLG+PRL+E++ +A K +KTP
Sbjct: 1086 ALAHAGECVGAIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINVA-KQVKTP 1144
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEP 677
S+ + ++ +++A + + T L++V + + P+P
Sbjct: 1145 SLTVYLQDEIAMDQERAKDVQTHLEHTT----LDRVTVVSQVIYDPDP 1188
Score = 83.2 bits (204), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 86/154 (55%), Gaps = 2/154 (1%)
Query: 862 EKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 921
E+ + +L TDG N+ + ++D + ND+ + GIEA R ++RE++ V +
Sbjct: 1336 ERTNNWVLDTDGCNLEDVLPI-PMVDDTRTTSNDMTEIFHVLGIEAVRRALLRELRAVIS 1394
Query: 922 VYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGR 980
G V+ RHL+++ D MT G +++ R+GI R++ + K +FE +E + +A++
Sbjct: 1395 FDGSYVNYRHLAILCDTMTQKGYLMSITRHGINRIDKGPLMKCSFEETVEILMEAAVFAE 1454
Query: 981 EDSLRAPSARVMLGQECRQGTGLFQLRNREKKKK 1014
D LR + +M+GQ C GTG F + E+K K
Sbjct: 1455 ADHLRGVTENIMMGQLCPLGTGYFDVLIDEEKLK 1488
>gi|70946579|ref|XP_742990.1| RNA polymerase I [Plasmodium chabaudi chabaudi]
gi|56522268|emb|CAH80362.1| RNA polymerase I, putative [Plasmodium chabaudi chabaudi]
Length = 1045
Score = 244 bits (624), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 147/387 (37%), Positives = 209/387 (54%), Gaps = 62/387 (16%)
Query: 260 FRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLL 319
F +D ++ L +V++ N + E L+ F N M+ +GAKGS VN I +L
Sbjct: 77 FDNMLDSLFQPYLCRVSSGTNNLITMENLMNKFLDNGFSNMIFTGAKGSKVNYSMICGML 136
Query: 320 GQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLI 379
Q LEGKR M SG+TLPSF Y+ R+ G + F+ G++PQE+FFHCM+GREGLI
Sbjct: 137 DQQYLEGKRVPRMRSGKTLPSFHRYDYGARSCGLITDCFLEGLRPQEYFFHCMSGREGLI 196
Query: 380 DTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQ 439
DTAVKT++SGY+QRCL+K +E + +HYD TVR+ D ++IQ LYGEDG+D +K YL
Sbjct: 197 DTAVKTAKSGYIQRCLIKSMESIILHYDGTVRNEDNAIIQFLYGEDGIDPSKTAYLNSPS 256
Query: 440 FSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQ 499
+L+ + +S + L + SS
Sbjct: 257 ------------------DLINNYNISFS--KYLNYGSS--------------------- 275
Query: 500 WYQLDDKARKKYRKKFKACPQ---PLISTFQPDAHFGSISENLADSVVKYTKGRTDASHV 556
QL K + + +C + PLI + P + GS+S+N DS + ++D +
Sbjct: 276 --QLIQKNQNLFMSN-GSCSKNEDPLICQYNPYTYIGSVSDNY-DSKLNNILRKSDFNLT 331
Query: 557 DKFYDMIFY---------KNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMN 607
+ D FY K SL +PGE++G+L AQS GEP+TQMTLNTFH AG N
Sbjct: 332 NN--DENFYSLSSSLLRSKYFHSLCSPGESIGILVAQSFGEPATQMTLNTFHLAGT--EN 387
Query: 608 VTLGIPRLREILMMATKAIKTPSMEIP 634
VT+GIPRL+EI + +K P + +P
Sbjct: 388 VTMGIPRLKEIF-LTSKLTSKPMIYVP 413
Score = 73.6 bits (179), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 42/58 (72%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSG 943
+D KLY NDI+ + TYGIEA I +E+K VF YGI++D RHLS ++D+MTH+G
Sbjct: 988 IDKTKLYCNDIYTIVKTYGIEAGRLCITKELKKVFEAYGIKIDFRHLSFISDFMTHTG 1045
>gi|221486415|gb|EEE24676.1| DNA-directed RNA polymerase II largest subunit, putative
[Toxoplasma gondii GT1]
gi|221508191|gb|EEE33778.1| DNA-directed RNA polymerase II largest subunit, putative
[Toxoplasma gondii VEG]
Length = 1892
Score = 244 bits (623), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 149/421 (35%), Positives = 237/421 (56%), Gaps = 32/421 (7%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V Q + P+ P+ G++QD +++ +K + RDTFLT+ NL+ Q I
Sbjct: 505 RAEIKHLMKVPKQIVSPQGNKPVMGIVQDSLLAVSKFTRRDTFLTKPMVYNLLLQ---IP 561
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVII------NLTPKDKVIIRHGELLSGILDKKQF 126
PP I P+PLWTGKQ+ S ++ K ++ ++ ++ +G++D+K+
Sbjct: 562 YWSGVVPPPAILHPVPLWTGKQLFSLLLFFDSSVSGGNTKTRINMQR-DVGAGLVDRKK- 619
Query: 127 GSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCL 186
L + D V IR GELL+G + KK GS L+H +W G E LS L
Sbjct: 620 ----ENLFLSERDERVIIRQGELLAGKICKKIVGSASGSLIHLLWLEAGPERTKDFLSTL 675
Query: 187 AKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEII 246
KL +L GFT+G +DI+ +E + K I+++A++ + A L++ P
Sbjct: 676 QKLTNYWLLHQGFTVGCKDIIANEETNEKVRDILDQAKKEVDKLIRLAHRGRLESQP--- 732
Query: 247 SSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAK 306
L+E+ F A+++++ S ++ + + L E +NN+ MV +G+K
Sbjct: 733 GKSLRES------FEARVNKELNSARER-SGKVAAESLDE-------SNNIMAMVLAGSK 778
Query: 307 GSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQE 366
GST+N QI +GQ +EGKR + R+LP F ++ SP++ GFV+ +++G++P E
Sbjct: 779 GSTINISQIMACVGQQNVEGKRIPFGFNERSLPHFHKFDYSPQSRGFVENSYLSGLEPHE 838
Query: 367 FFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDG 426
FFH M GREG+IDTA KTS +GY+QR L+K +E + V+YD TVR+S ++Q LYGEDG
Sbjct: 839 LFFHAMGGREGIIDTACKTSETGYIQRRLMKAMEDVMVYYDRTVRNSICEVLQFLYGEDG 898
Query: 427 L 427
+
Sbjct: 899 M 899
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 72/108 (66%), Gaps = 5/108 (4%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
+LA+ GE VG +AAQSIGEP+TQMTLNTFHFAG G NVTLG+PRL+E++ +A K +KTP
Sbjct: 1086 ALAHAGECVGAIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINVA-KQVKTP 1144
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEP 677
S+ + ++ +++A + + T L++V + + P+P
Sbjct: 1145 SLTVYLQDEIAMDQERAKDVQTHLEHTT----LDRVTVVSQVIYDPDP 1188
Score = 83.2 bits (204), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 86/154 (55%), Gaps = 2/154 (1%)
Query: 862 EKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 921
E+ + +L TDG N+ + ++D + ND+ + GIEA R ++RE++ V +
Sbjct: 1336 ERTNNWVLDTDGCNLEDVLPI-PMVDDTRTTSNDMTEIFHVLGIEAVRRALLRELRAVIS 1394
Query: 922 VYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGR 980
G V+ RHL+++ D MT G +++ R+GI R++ + K +FE +E + +A++
Sbjct: 1395 FDGSYVNYRHLAILCDTMTQKGYLMSITRHGINRIDKGPLMKCSFEETVEILMEAAVFAE 1454
Query: 981 EDSLRAPSARVMLGQECRQGTGLFQLRNREKKKK 1014
D LR + +M+GQ C GTG F + E+K K
Sbjct: 1455 ADHLRGVTENIMMGQLCPLGTGYFDVLIDEEKLK 1488
>gi|340503712|gb|EGR30247.1| hypothetical protein IMG5_137010 [Ichthyophthirius multifiliis]
Length = 1464
Score = 244 bits (623), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 193/668 (28%), Positives = 321/668 (48%), Gaps = 64/668 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA +L++V + PK+G + L+QD + + ++ +D F RA + LC
Sbjct: 506 RAEAQYLLDVKQNLISPKNGETIIALVQDFLTASYLITHKDMFFDRA-----AFSQLCTY 560
Query: 73 ----NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGS 128
N +I+ PP + P+ +WTGKQ + ++I K+K+I+ + L +K + +
Sbjct: 561 FSDGNEQIQLPPPAVILPVEMWTGKQAIDAMLIP-NRKNKIIV------NLTLKEKCYNT 613
Query: 129 TQYGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLA 187
+ + D +V ++ ELL G L K GS + GL + + + + A ++++ A
Sbjct: 614 KKDREIMCPKDGYVVFQNSELLCGNLGKTTLGSGNKNGLFYRLSRDNSQQIAAAVMTRFA 673
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIIS 247
KL +L G T+G+ D+ + + + K ++A + T + + EI +
Sbjct: 674 KLSARWLSNYGMTIGISDVTPSPQLNEQNEKQKDEAIQKCTYES-------KKFEREINA 726
Query: 248 SQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKG 307
Q ++ + A +Q ++ + K N + + E P N M G+KG
Sbjct: 727 QQKLHTTSNTSEIAADKKKQVEAFISKTLNQVREDIGSNCNKELPPTNGPLIMATCGSKG 786
Query: 308 STVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEV--SPRAGGFVDGRFMTGIQPQ 365
S N Q+ +GQ + GKR +GRTLP F E+ P A GFV F TG+
Sbjct: 787 SATNLSQMIGCVGQQIIGGKRVPNGFTGRTLPHFAKDEIFPHPEAMGFVRNSFFTGLSAP 846
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDL-SLIQVLY-G 423
EFFFH MAGRE L+DTAVKT+ +GY+ R LVK LE L+++YD+TVR D LIQ Y G
Sbjct: 847 EFFFHTMAGRESLVDTAVKTADTGYMSRRLVKMLEDLSINYDLTVRTCDKKELIQFRYGG 906
Query: 424 EDGLDVTKRQYLTDKQ-----FSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSS 478
+ + ++DK ++ ++ I + +LL + + L L K
Sbjct: 907 DGICPWMSEEKVSDKSVPVDLYTVFKNVKSIIPNRDGQKSLLPFQIMKITLKQLQNVKMD 966
Query: 479 GKPNFIFSPHRTKFTMDLLEQWYQLDDKARKK-----YRKKFKACPQPLISTFQPDAHFG 533
P + + ++ YQ D+ +K Y++ + + + F+ D+ F
Sbjct: 967 YIPELKINKNNQLQINEINNHHYQSDNIHIQKLLSDTYKEDSSSIVKEPLEYFK-DSVFN 1025
Query: 534 SISENLADSVVKY------TKGRTDAS------HVDK-----------FYDMIFYKNLLS 570
I + + ++K T+G + + HVD F+ +I+ +
Sbjct: 1026 FIRQ-ICLKIIKVRQQIGLTRGDDELTNNESSIHVDNSIHITEQQLMFFFKLIWERYPQM 1084
Query: 571 LANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPS 630
L PGE VG + A SI EP+TQMTL +FHFAG MN+T G+PR++EI+ A K I TP
Sbjct: 1085 LVEPGEAVGAIGATSISEPATQMTLKSFHFAGIASMNITQGVPRMKEII-DAAKNISTPV 1143
Query: 631 MEIPFLPD 638
+++ LP+
Sbjct: 1144 IDVKLLPE 1151
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 63/122 (51%), Gaps = 1/122 (0%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D + DI+ + GIEAA + II E+ + + VD RHL LVAD +T G
Sbjct: 1313 VDFSSTSTVDIYEVFEVLGIEAARKTIINEITKTIKSHSLNVDTRHLVLVADVLTSKGRL 1372
Query: 946 VAMNRNGIR-LNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
R GI + S + +FE E + A++QGR+D L S R+++GQ GTG F
Sbjct: 1373 YGSTRQGINFMKDSTLMLASFEKTTEILYNAALQGRKDLLEGVSERIIIGQNIPMGTGTF 1432
Query: 1005 QL 1006
+
Sbjct: 1433 NV 1434
>gi|320035344|gb|EFW17285.1| DNA-directed RNA polymerase III largest subunit [Coccidioides
posadasii str. Silveira]
Length = 1444
Score = 244 bits (623), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 192/631 (30%), Positives = 299/631 (47%), Gaps = 56/631 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + PK+G P+ IQD + + LS +D F R + + L
Sbjct: 530 RAEAMELMGVKNNLATPKNGEPIIAAIQDFITAAYLLSSKDNFYDRGSFTQICGYML-QP 588
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
T+ PP + KP LWTGKQV + V++ + + V++ L + + + T
Sbjct: 589 GTKFDLPPPAVLKPQMLWTGKQVFN-VLMRPSKESPVLV---NLDAACREFRAPKGTPRD 644
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLV-HAVWDTHGAEHAISLLSCLAKLFT 191
L D + IR+ E++ G++DK GS + V + + G + A ++ L++L
Sbjct: 645 LDPN--DGWLCIRNSEIMCGVMDKSTIGSGKKDSVFYVMLRDFGPQVAAEAMNRLSRLSA 702
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQ 251
+ +GF++G+ D+ + + +++ +A A C+AL + L + +L+
Sbjct: 703 RWFTNIGFSIGITDVYPGDSLLQAKKQLVEEAY-----AQCDAL-IQL-----FKAGKLE 751
Query: 252 EAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVN 311
+A Q ++ Q +L KV + C+ E N+ M SG+KGST+N
Sbjct: 752 KAPGGDEQ--QNMESQISGILSKVRQQAGEQCIAE----LSKWNSPLIMATSGSKGSTIN 805
Query: 312 TMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHC 371
Q+ L+GQ + G+R RTLP F Y P A GFV F +G+ P EFFFH
Sbjct: 806 VAQMIALVGQQIIAGQRVQDGFQDRTLPHFPKYARQPPAKGFVRNSFFSGLIPSEFFFHA 865
Query: 372 MAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTK 431
++GREGLIDTAVKT+ +GY+ R L+K LE L+ YD TVR+S +++Q YG+D LD
Sbjct: 866 ISGREGLIDTAVKTAETGYMSRRLMKSLEDLSSRYDDTVRNSSSNIVQFQYGDDKLDPVD 925
Query: 432 RQYLT-----DKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFS 486
+ D+ F+ E K LL + L +L +
Sbjct: 926 MEGKAKPVHFDRTFTHAETTT----YSKEDRGLLPSEVMDLCRQML-------------A 968
Query: 487 PHRTKFT-MDLLEQWYQLDDKA-----RKKYRKKFKACPQPLISTFQPDAH--FGSISEN 538
P R K DLL + D++ + + + F + I H G+ ++
Sbjct: 969 PERAKLDRFDLLGNSLEYTDRSDHGIDQLESNRDFLQSIEDYIQAKADRLHSATGTEADT 1028
Query: 539 LADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTF 598
L + + A + F K + PG VG + AQSIGEP TQMTL TF
Sbjct: 1029 LEGQMALSHTVKLSAKTLTTFITSCLTKYKKAQVEPGHAVGAVGAQSIGEPGTQMTLKTF 1088
Query: 599 HFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
HFAG M++T G+PR++EI+ A+K I TP
Sbjct: 1089 HFAGVAGMSITQGVPRIKEII-NASKEISTP 1118
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 3/115 (2%)
Query: 893 VNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNG 952
N+I GIEAA I+ E+ +V GI DPRH+ L+AD MT+ G + + R G
Sbjct: 1294 TNNIMETKDVLGIEAARTTIVDEISDVMKDMGI--DPRHMQLLADVMTYKGEVLGITRFG 1351
Query: 953 I-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+ ++ S +Q +FE + + A GR D + S ++LG+ GTG ++
Sbjct: 1352 LAKMRDSVLQLASFEKTADHLFDAGGAGRTDLVEGVSECIILGKSVSLGTGAMEM 1406
>gi|303315581|ref|XP_003067798.1| DNA-directed RNA polymerase III largest subunit, putative
[Coccidioides posadasii C735 delta SOWgp]
gi|240107468|gb|EER25653.1| DNA-directed RNA polymerase III largest subunit, putative
[Coccidioides posadasii C735 delta SOWgp]
Length = 1444
Score = 244 bits (623), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 192/631 (30%), Positives = 299/631 (47%), Gaps = 56/631 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + PK+G P+ IQD + + LS +D F R + + L
Sbjct: 530 RAEAMELMGVKNNLATPKNGEPIIAAIQDFITAAYLLSSKDNFYDRGSFTQICGYML-QP 588
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
T+ PP + KP LWTGKQV + V++ + + V++ L + + + T
Sbjct: 589 GTKFDLPPPAVLKPQMLWTGKQVFN-VLMRPSKESPVLV---NLDAACREFRAPKGTPRD 644
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLV-HAVWDTHGAEHAISLLSCLAKLFT 191
L D + IR+ E++ G++DK GS + V + + G + A ++ L++L
Sbjct: 645 LDPN--DGWLCIRNSEIMCGVMDKSTIGSGKKDSVFYVMLRDFGPQVAAEAMNRLSRLSA 702
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQ 251
+ +GF++G+ D+ + + +++ +A A C+AL + L + +L+
Sbjct: 703 RWFTNIGFSIGITDVYPGDSLLQAKKQLVEEAY-----AQCDAL-IQL-----FKAGKLE 751
Query: 252 EAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVN 311
+A Q ++ Q +L KV + C+ E N+ M SG+KGST+N
Sbjct: 752 KAPGGDEQ--QNMESQISGILSKVRQQAGEQCIAE----LSKWNSPLIMATSGSKGSTIN 805
Query: 312 TMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHC 371
Q+ L+GQ + G+R RTLP F Y P A GFV F +G+ P EFFFH
Sbjct: 806 VAQMIALVGQQIIAGQRVQDGFQDRTLPHFPKYARQPPAKGFVRNSFFSGLIPSEFFFHA 865
Query: 372 MAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVT- 430
++GREGLIDTAVKT+ +GY+ R L+K LE L+ YD TVR+S +++Q YG+D LD
Sbjct: 866 ISGREGLIDTAVKTAETGYMSRRLMKSLEDLSSRYDDTVRNSSSNIVQFQYGDDKLDPVD 925
Query: 431 ----KRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFS 486
+ D+ F+ E K LL + L +L +
Sbjct: 926 MEDKAKPVHFDRTFTHAETTT----YSKEDRGLLPSEVMDLCRQML-------------A 968
Query: 487 PHRTKFT-MDLLEQWYQLDDKA-----RKKYRKKFKACPQPLISTFQPDAH--FGSISEN 538
P R K DLL + D++ + + + F + I H G+ ++
Sbjct: 969 PERAKLDRFDLLGNSLEYTDRSDHGIDQLESNRDFLQSIEDYIQAKADRLHSATGTEADT 1028
Query: 539 LADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTF 598
L + + A + F K + PG VG + AQSIGEP TQMTL TF
Sbjct: 1029 LEGQMALSHTVKLSAKTLTTFITSCLTKYKKAQVEPGHAVGAVGAQSIGEPGTQMTLKTF 1088
Query: 599 HFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
HFAG M++T G+PR++EI+ A+K I TP
Sbjct: 1089 HFAGVAGMSITQGVPRIKEII-NASKEISTP 1118
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 3/115 (2%)
Query: 893 VNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNG 952
N+I GIEAA I+ E+ +V GI DPRH+ L+AD MT+ G + + R G
Sbjct: 1294 TNNIMETKDVLGIEAARTTIVDEISDVMKDMGI--DPRHMQLLADVMTYKGEVLGITRFG 1351
Query: 953 I-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+ ++ S +Q +FE + + A GR D + S ++LG+ GTG ++
Sbjct: 1352 LAKMRDSVLQLASFEKTADHLFDAGGAGRTDLVEGVSECIILGKSVSLGTGAMEM 1406
>gi|119191177|ref|XP_001246195.1| hypothetical protein CIMG_05636 [Coccidioides immitis RS]
Length = 1430
Score = 244 bits (622), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 196/637 (30%), Positives = 304/637 (47%), Gaps = 68/637 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + PK+G P+ IQD + + LS +D F R + L
Sbjct: 530 RAEAMELMGVKNNLATPKNGEPIIAAIQDFITAAYLLSSKDNFYDRGSFTQTCGYML-QP 588
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
T+ PP + KP LWTGKQV + V++ + + V++ L + + + T
Sbjct: 589 GTKFDLPPPAVLKPQMLWTGKQVFN-VLMRPSKESPVLV---NLDAACREFRAPKGTPRD 644
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLV-HAVWDTHGAEHAISLLSCLAKLFT 191
L D + IR+ E++ G++DK GS + V + + G + A ++ L++L
Sbjct: 645 LDPN--DGWLCIRNSEIMCGVMDKSTIGSGKKDSVFYVMLRDFGPQVAAEAMNRLSRLSA 702
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQ 251
+ +GF++G+ D+ + + +++ +A A C+AL + L + +L+
Sbjct: 703 RWFTNIGFSIGITDVYPGDSLLQAKKQLVEEAY-----AQCDAL-IQL-----FKAGKLE 751
Query: 252 EAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVN 311
+A Q ++ Q +L KV + C+ E + + N+ M SG+KGST+N
Sbjct: 752 KAPGGDEQ--QNMESQISGILSKVRQQAGEQCIAE--LSKW--NSPLIMATSGSKGSTIN 805
Query: 312 TMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHC 371
Q+ L+GQ + G+R RTLP F Y P A GFV F +G+ P EFFFH
Sbjct: 806 VAQMIALVGQQIIAGQRVQDGFQDRTLPHFPKYARQPPAKGFVRNSFFSGLIPSEFFFHA 865
Query: 372 MAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTK 431
++GREGLIDTAVKT+ +GY+ R L+K LE L+ YD TVR+S +++Q YG+D LD
Sbjct: 866 ISGREGLIDTAVKTAETGYMSRRLMKSLEDLSSRYDDTVRNSSSNIVQFQYGDDKLDPVD 925
Query: 432 RQYLT-----DKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFS 486
+ D+ F+ E K LL + L +L +
Sbjct: 926 MEGKAKPVHFDRTFTHAETTT----YSKEDRGLLPSEVIDLCRQML-------------A 968
Query: 487 PHRTKFT-MDLLEQWYQLDDKA-----RKKYRKKFKACPQPLISTFQPDAHFGSISENLA 540
P R K DLL + D++ + + + F + I H S++ A
Sbjct: 969 PERAKLDRFDLLGNSLEYTDRSDHGIDQLESNRDFLQSIEDYIQAKADRLH--SVTGTEA 1026
Query: 541 DSVVKYTKGRTDASHVDK--------FYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQ 592
D++ +G+ SH K F K + PG VG + AQSIGEP TQ
Sbjct: 1027 DTL----EGQMALSHTVKLSAKTLTTFITSCLTKYKKAQVEPGHAVGAVGAQSIGEPGTQ 1082
Query: 593 MTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
MTL TFHFAG M++T G+PR++EI+ A+K I TP
Sbjct: 1083 MTLKTFHFAGVAGMSITQGVPRIKEII-NASKEISTP 1118
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Query: 893 VNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNG 952
N+I GIEAA I+ E+ +V GI DPRH+ L+AD MT+ G + + R G
Sbjct: 1294 TNNIMETKDVLGIEAARTTIVDEISDVMKDMGI--DPRHMQLLADVMTYKGEVLGITRFG 1351
Query: 953 I-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVML 993
+ ++ S +Q +FE + + A GR D + A M+
Sbjct: 1352 LAKMRDSVLQLASFEKTADHLFDAGGAGRTDLVEGTGAMEMV 1393
>gi|313231696|emb|CBY08809.1| unnamed protein product [Oikopleura dioica]
Length = 859
Score = 244 bits (622), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 188/310 (60%), Gaps = 21/310 (6%)
Query: 139 DTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRV- 197
D+ V I++G + SG LDK Q GS +Y ++ A+ + G ++ + + YL+
Sbjct: 3 DSEVVIKNGYVCSGYLDKDQIGSAKYSILAAIEEIFGGPTVGKFITAVTYCLSHYLKCYR 62
Query: 198 GFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQEAYASI 257
GFTLG+RD++ +R++ + + L LD + ++++ A+
Sbjct: 63 GFTLGIRDVVT--------------SRKIAKKHSQEELA-ELDA---AVRAKIRHAHLVG 104
Query: 258 PQFRA-QIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQIS 316
+F ++D K + VT I+++C P L E FP NNL+ ++ +GAKGS N + ++
Sbjct: 105 TEFTMHEVDAICKKAANSVTEAIHRLCEP-NLEEKFPRNNLETLIVTGAKGSKANLLNMA 163
Query: 317 CLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGRE 376
LGQ+E +GKRP +M SGR P + PYE R+G F+ R+ G++PQE FFH MAGR+
Sbjct: 164 SNLGQVEFDGKRPKIMASGRCFPCWKPYEHDIRSGAFISHRYAGGLRPQEMFFHVMAGRD 223
Query: 377 GLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLT 436
GLIDTA KTS SGYLQRCL+KHLEG+TV YD TVRD D S++Q +GEDG+DV K Y+
Sbjct: 224 GLIDTACKTSSSGYLQRCLIKHLEGITVSYDRTVRDHDQSVVQFQFGEDGIDVAKTPYMK 283
Query: 437 DKQFSFLEDN 446
QF F+++N
Sbjct: 284 PHQFDFIKEN 293
Score = 206 bits (525), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 157/502 (31%), Positives = 239/502 (47%), Gaps = 79/502 (15%)
Query: 561 DMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILM 620
++++ K SL PG+ +G++ AQSIGEPSTQMTLNTFH AG+ D+N+TLGIPRLRE+LM
Sbjct: 381 ELLYSKYRQSLMPPGDQIGLVIAQSIGEPSTQMTLNTFHMAGKADVNITLGIPRLRELLM 440
Query: 621 MATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWL-------EI 673
A +KTPSM IPF + E + + S+ I ++DV+ VK + L I
Sbjct: 441 TAPTEVKTPSMTIPFHRHIK--EAQVEKFVNSLKNIRLSDVITAVKGQNKLIVQEGSFVI 498
Query: 674 SPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERK-----FLKELEVAIAKRAAQGL 728
E + K C + + P ++ RK +K+LE A R+ Q L
Sbjct: 499 QSEIEIKIGRKLC--------KELDLDPETVVAEIMRKKLFKVVIKKLEDAEKARSKQEL 550
Query: 729 -KNMNIEQSRDQMEDDVEDDEGEGAEGAGAALG----RVDVSSDEERDEEDA-----VQS 778
+ N E ++ + GA AG G + D+E D ++
Sbjct: 551 FVSKNKEAAKPK----------RGARKAGNDDGDDPDACAIPDDKEEDIDECEYEDVDDE 600
Query: 779 HKKVNQEEDNDFEEPEDEERMSEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVH 838
K + + +DE + + E D ++ S+ F + V++ H V
Sbjct: 601 VKDEEDDAEEVDGNSDDESPLKQSETDQILK------ELNMTKSSGNFWEKVLSSHRSVT 654
Query: 839 KYSYDKKNHMWCKLLFL--PSN---------------------------LFEEKESK-HL 868
+D K W + F PS+ F++ E + H
Sbjct: 655 SVVHDAKKFSWILVTFNRDPSSENIDLVHIIESAVREISIQGIPKISKVTFKQSEDRTHF 714
Query: 869 -LKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 927
+ T+GIN +Y +LDLN++ ND++ + YGIEAA + RE+ VF YGI V
Sbjct: 715 EILTEGINFPGFYKYPEMLDLNRISTNDVNAFRNAYGIEAAVMTMQREIDKVFKPYGIAV 774
Query: 928 DPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAP 987
D RH SLVADY+T G Y A NR+G++ S IQKM++E + + + + G +D + +P
Sbjct: 775 DKRHTSLVADYVTQEGQYRAFNRHGLKTCASPIQKMSYETTTQFLIDSIVYGEDDDMSSP 834
Query: 988 SARVMLGQECRQGTGLFQLRNR 1009
+A V GQ + GTG F +R +
Sbjct: 835 AASVAAGQLFKGGTGYFDIRQQ 856
>gi|389584239|dbj|GAB66972.1| DNA-directed RNA polymerase I 190 kDa polypeptide [Plasmodium
cynomolgi strain B]
Length = 2256
Score = 243 bits (621), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 155/445 (34%), Positives = 230/445 (51%), Gaps = 49/445 (11%)
Query: 260 FRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLL 319
F ID ++ L +V++N N + L+ F N M+ +GAKGS VN I +L
Sbjct: 1469 FDGLIDSLFQPYLCRVSSNTNNLISMNNLMNKFLNNGFSSMIFTGAKGSKVNYAMICGML 1528
Query: 320 GQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLI 379
Q LEGKR M SG+TLPSF Y+ RA G + F+ G++PQE+FFHCM+GREGLI
Sbjct: 1529 DQQYLEGKRVPRMRSGKTLPSFHRYDYGARACGLITDCFLEGLRPQEYFFHCMSGREGLI 1588
Query: 380 DTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQ 439
DTAVKT++SGY+QRCL+K +E + +HYD TVR+ D ++IQ LYGEDG+D ++
Sbjct: 1589 DTAVKTAKSGYIQRCLIKCMESVILHYDGTVRNEDNAIIQFLYGEDGIDPSR-------- 1640
Query: 440 FSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQ 499
S+L+ IC+Y V + K+ L A+ + + F PH + +
Sbjct: 1641 ISYLDAPKDLICNYNVAFS---KYLLHDAVEKM----QRNERLFGGGPHERGESDESGGG 1693
Query: 500 WYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSV---VKYTKGRTDASHV 556
R PL + F P ++ G+ SE + + + D ++
Sbjct: 1694 GESGGAGQR----------GDPLETHFSPYSYIGATSERFREKMHHTIANDLNLADCYNL 1743
Query: 557 DKFYD-----MIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLG 611
+D ++ K SL +PGE++G+L AQS GEP+TQMTLNTFH AG NVT+G
Sbjct: 1744 PDDFDSQSAALLKSKYFRSLCDPGESIGILVAQSFGEPATQMTLNTFHLAGT--ENVTMG 1801
Query: 612 IPRLREILMMATKAIKTPSMEIPFLPDMPK-------------LEKKANRLAKSMTRITM 658
IPRL+EI + +K P + +P D + + + A ++ + I +
Sbjct: 1802 IPRLKEIF-LTSKLTSKPMIYVPIKVDNERVTTASDANAMKSYINEIAEKILSTYKSICL 1860
Query: 659 ADVLEKVKIKEWLEISPEPHMNYQM 683
+DV+ V + L + N QM
Sbjct: 1861 SDVIYGVGVDRKLILREPGAKNSQM 1885
Score = 96.3 bits (238), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 117/267 (43%), Gaps = 68/267 (25%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL-CI 71
++EA+ LMN + KDGSPL GL QD ++ G L+ +TFL EY NL+ AL C+
Sbjct: 762 RSEATHLMNSDYLFTSFKDGSPLRGLAQDFILGGLHLTSLETFLNYDEYCNLLQCALNCL 821
Query: 72 LN------------TEIRTLP-------------------------------PTIWKPMP 88
L+ T+ P P I P
Sbjct: 822 LSRKDCFFFERSRSTQGEGQPTQTTWKIRNHSYLDPYAVVLNRTHFTIVMEEPAILSPRR 881
Query: 89 LWTGKQVLSTVIINLTPKDKVII------RHGELLSGILDKKQFGSTQYGLVH----AVW 138
LWTGKQ++++++ + D+V + R E + + + Y ++W
Sbjct: 882 LWTGKQLITSILKTII--DRVAVETYNQRRDNEFM------RNYKGINYCAKAKTDPSLW 933
Query: 139 ------DTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ V I++ ELL G+LDK FG++ VH ++ G + A +L C +LF
Sbjct: 934 SFDPKNECEVIIKNSELLQGVLDKLHFGASSNSFVHLCYELFGPKTAAVILDCFGRLFIS 993
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKI 219
+LQ G +L + D ++++E ++ I
Sbjct: 994 FLQLRGTSLSLYDFILKKEAREEKLNI 1020
>gi|315425378|dbj|BAJ47044.1| DNA-directed RNA polymerase subunit A [Candidatus Caldiarchaeum
subterraneum]
gi|315426559|dbj|BAJ48189.1| DNA-directed RNA polymerase subunit A' [Candidatus Caldiarchaeum
subterraneum]
gi|343485295|dbj|BAJ50949.1| DNA-directed RNA polymerase subunit A' [Candidatus Caldiarchaeum
subterraneum]
Length = 1254
Score = 243 bits (621), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 193/658 (29%), Positives = 307/658 (46%), Gaps = 112/658 (17%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+ EA L+ V + + P+ G+P+ G+I+D + S L+ +T LT++E L L +
Sbjct: 473 QTEARELLVVENNIISPRYGAPIIGVIRDFLTSLYLLTRDETKLTKSELAML----LAAI 528
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
PP + P P+WTGKQV S L PKD H + K F +T+
Sbjct: 529 KYRGPIPPPAVKDPEPMWTGKQVFSL----LLPKD---FNH-------VTKSSFTNTE-- 572
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQY-GLVHAVWDTHGAEHAISLLSCLAKLFT 191
V +++G+L+SG++DK G + ++H + +G++ A L + +L
Sbjct: 573 ---------VVVKNGQLISGVIDKGSVGVEKANSILHRLARDYGSDVARQFLDNVVRLAN 623
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQ 251
+++ GF+ V D+ V + +I K+ ++ ++ P + + Q
Sbjct: 624 TFIELKGFSFAVDDLYVPDQIHSDIQQIFKKSETEFSKLLAQYQTGEVEIPPGMTAEQAF 683
Query: 252 EAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVN 311
EA + D K + +V+ N ++ M ++GA+G+ +N
Sbjct: 684 EADV-LKILSEARDSAGKLIRARVSQN----------------SSAFIMAKTGARGTMLN 726
Query: 312 TMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHC 371
Q+ ++GQ + +R R L F ++SPRA GFV F++G+ P EFFFH
Sbjct: 727 LDQMIAVVGQQSVRRERVHRGYRKRVLSFFKQDDLSPRARGFVYNSFVSGLDPLEFFFHA 786
Query: 372 MAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLS-LIQVLYGEDGLDVT 430
+ GR+GL+DTAV+T +SGY+QR L+ LE L + YD TVR +D +IQ YGEDG+D
Sbjct: 787 VGGRDGLVDTAVRTQQSGYMQRRLINALEALYIDYDGTVRTADEGRIIQFAYGEDGVDPA 846
Query: 431 KRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPHRT 490
K D+ K + ++ ++L SGKP
Sbjct: 847 K------------SDHGKAVTVSNIVNSVLAS-------------AYSGKPA-------- 873
Query: 491 KFTMDLLEQ-WYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKG 549
+ + +EQ Q DK KK ++ +A + K
Sbjct: 874 --SQEYIEQKLQQASDKLNKKIIEELRA---------------------------ELRKT 904
Query: 550 RTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVT 609
A VDK + + K SLA PG+ VGV+ AQSIGEP TQ+TL TFHFAG G+ ++
Sbjct: 905 NPPAEAVDKIVEEVVSKYNASLAEPGDAVGVVTAQSIGEPGTQLTLRTFHFAGVGEQSIL 964
Query: 610 LGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKI 667
G+PRL EI+ A + TP M IP P+ KA +LAK + T+ D++ +V +
Sbjct: 965 KGLPRLIEIV-DARRTPTTPIMYIPLTPEYASNLAKARKLAKQIQHTTLGDLISEVLV 1021
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 95/151 (62%), Gaps = 3/151 (1%)
Query: 857 SNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREV 916
+ +F+EK+ +++++T+G N+ + + + D ++ NDI+ +A +GIEAA I+ E
Sbjct: 1098 ATVFKEKD-EYVIRTEGSNLREVMEVPGV-DWRRIKTNDIYEIAEVFGIEAARNAIVEEA 1155
Query: 917 KNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNG-IRLNPSFIQKMTFEMPLEKIRQA 975
K V G++VD RHL L+AD MT SG+ + R+G ++L S + + +E+ ++ + +A
Sbjct: 1156 KAVLEDQGLDVDIRHLLLLADMMTVSGSVKQIGRHGVVKLKSSVLARAAYEISVQTLLEA 1215
Query: 976 SMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+ +G DSL+ R+++G+E + GTG+ L
Sbjct: 1216 AARGEVDSLKGNVERILIGREIQVGTGMVTL 1246
>gi|221485733|gb|EEE24003.1| RNA polymerase Rpb1 domain-containing protein, putative [Toxoplasma
gondii GT1]
Length = 2626
Score = 243 bits (620), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 167/487 (34%), Positives = 241/487 (49%), Gaps = 62/487 (12%)
Query: 260 FRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLL 319
F +D ++S + KV + + + FP N M++SG+KGS VN IS L
Sbjct: 1458 FNEMLDAFFQSAMGKVASKSTDIMKGSYFLYRFPRNGFASMIKSGSKGSNVNFAMISVFL 1517
Query: 320 GQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLI 379
GQ LEG+R M S R+LP+FLP++ RA GF+ F++G++ +E+FFHCMAGREGL+
Sbjct: 1518 GQQSLEGQRVKFMTSDRSLPAFLPFDFGSRARGFITSSFLSGLKEEEYFFHCMAGREGLV 1577
Query: 380 DTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQ 439
DTAVKT++SGYLQR + K LE LTV YD +VRD+D S++Q +YG+DG D R LT ++
Sbjct: 1578 DTAVKTAKSGYLQRSVTKGLEALTVRYDGSVRDADDSIVQFVYGDDGRDPAHR--LTFEK 1635
Query: 440 FSFLEDNIKWICSYKVILNLLKKHPLSLA---------------LLLLLT------FKSS 478
L +N IL + P L+ L+ T +
Sbjct: 1636 IDMLLEN-------PAILQRVHAPPAELSNGKQSANTKPGASEDLVADATDDAECLIQGC 1688
Query: 479 GKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISEN 538
G P +F D+ + DKA +Y A + + + S SE
Sbjct: 1689 GSPLTCLGVTAFQFENDM----QLVVDKAVARYESLRAAYSRTRETRHKKKRRKESGSEV 1744
Query: 539 LADSVVKYTKGRT-DASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNT 597
S + + + ++K +I++K + PGE VG +AAQSIGEP+TQMTLNT
Sbjct: 1745 SGASAARDARTTGLEKEELEKILRVIYHKCCMP---PGEAVGCVAAQSIGEPATQMTLNT 1801
Query: 598 FHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPF------LPDMPK---------- 641
FH AG G NVT+GIPRLRE+L KTP + IP L D P
Sbjct: 1802 FHLAGHGAANVTMGIPRLRELLQQGA-VTKTPILYIPLRTAANRLQDSPNADLEAREELD 1860
Query: 642 ----LEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCFIPAHMYRDKT 697
L + A +S T +AD + V ++ + P P+ +P ++ R+ +
Sbjct: 1861 EGRVLVRNAGMALRSFTSFGLADCVHSVGVEANVCYQP-PNCPKGCPAFHLPPYVSRNNS 1919
Query: 698 --SVKPS 702
S+ PS
Sbjct: 1920 AQSIAPS 1926
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 115/281 (40%), Gaps = 95/281 (33%)
Query: 10 HFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL 69
H +AEA++++N +LVPK G PL GLIQD ++G L+ RDTFL + LV +
Sbjct: 809 HLARAEAAYILNADCHFLVPKSGEPLRGLIQDLCLAGCLLTARDTFLDIHSFQTLVSRGF 868
Query: 70 ----CILNTEIRTLPPTIWKPMPLWTGKQVLSTVI------------------------- 100
C N + PP I P P+WTGKQV++ ++
Sbjct: 869 ALGTCRSNCRLHVEPPAILWPKPMWTGKQVITCILKTLVDGMAASRFSQCRRSRQGAQGL 928
Query: 101 ---------------INLTPKDK------------------VIIRHGELLSGILDKKQFG 127
+NLT K K VIIR+ ELL G+ DK QFG
Sbjct: 929 GSKPTDEDALNRYEGVNLTGKAKTPGDAWGGAEDGDKEEEVVIIRNSELLQGVFDKAQFG 988
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
T GLVH V+ LL FG GL LL LA
Sbjct: 989 PTAGGLVHCVF----------LL--------FGGAAAGL---------------LLQSLA 1015
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGT 228
LF +L+ T D ++R+E + +R ++ + + GT
Sbjct: 1016 ALFCAFLKLRSATTSPADFVMRREGELQRQALVRQVIQAGT 1056
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 76/127 (59%), Gaps = 1/127 (0%)
Query: 869 LKTDGINVNFISQYR-HLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 927
++ +G N +I + + +D N + ND+ + YGIEAA + RE++ VF+ YGI+V
Sbjct: 2363 IQCEGSNFGWIHRMKDEAIDHNGILTNDVRAVLKYYGIEAARVCLARELERVFSAYGIKV 2422
Query: 928 DPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAP 987
D RHL+L+AD+MTH GT NR G+ + + +M++E + + +A + DSL P
Sbjct: 2423 DYRHLALIADFMTHGGTLRPFNRLGMAASNAPFLQMSYETSFKFLTEACERAAVDSLSTP 2482
Query: 988 SARVMLG 994
S +++G
Sbjct: 2483 SGSLVVG 2489
>gi|258564805|ref|XP_002583147.1| DNA-directed RNA polymerase III largest subunit [Uncinocarpus reesii
1704]
gi|237906848|gb|EEP81249.1| DNA-directed RNA polymerase III largest subunit [Uncinocarpus reesii
1704]
Length = 1435
Score = 243 bits (619), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 199/637 (31%), Positives = 306/637 (48%), Gaps = 68/637 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + PK+G P+ IQD + + LS +D F R ++ L +
Sbjct: 530 RAEAMELMGVKNNLATPKNGEPIIAAIQDFITAAYLLSSKDNFYDRKTFL-LYCGYMLEP 588
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
T+ PP + KP LWTGKQV + ++ KD + LL+ ++F S G
Sbjct: 589 GTKFDLPPPAVLKPQMLWTGKQVFNVMM--RPSKDSPV-----LLNLDAACREF-SAPKG 640
Query: 133 LVHAVW--DTHVTIRHGELLSGILDKKQFGSTQYGLV-HAVWDTHGAEHAISLLSCLAKL 189
+ D + IR+ E++ G++DK GS + V + + G A ++ L++L
Sbjct: 641 TPRDLDADDGWLCIRNSEIMCGLMDKSTIGSGKKDSVFYVMLRDFGPRVAAEAMNRLSRL 700
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEII--- 246
+L +GF++G+ D+ + + +I+ +A A C+ E+I
Sbjct: 701 SARWLTNMGFSIGITDVYPGDALLQAKREIVEEAY-----AQCD----------EVIQLF 745
Query: 247 -SSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGA 305
+ +L++A S Q ++ Q +L+KV + C+ E + + N+ M +SG+
Sbjct: 746 KTGKLEKAAGSDEQ--QTMENQISGILNKVRQQAGEKCIAE--LSKW--NSPLIMAQSGS 799
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGST+N Q+ L+GQ + G+R RTLP F + P A GFV F +G+ P
Sbjct: 800 KGSTINVAQMIALVGQQIIGGQRVQNGFQDRTLPHFPKHTRQPLAKGFVRNSFFSGLTPS 859
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
E FFH ++GREGLIDTAVKT+ +GY+ R L+K LE L+ YD TVR+S +++Q YG+D
Sbjct: 860 ELFFHAISGREGLIDTAVKTAETGYMSRRLMKSLEDLSCRYDDTVRNSSANIVQFQYGDD 919
Query: 426 GLDVT-----------KRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLT 474
LD R + + ++ +D+ CS I++L +K LS L
Sbjct: 920 KLDPVDMEGKAKPVHFDRTFTHAEATTYSKDDQGLPCSE--IMSLCRKL-LSAERSKLNR 976
Query: 475 FKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLIST--FQPDAHF 532
F G N + R+ +D LE K K QP+ T PD
Sbjct: 977 FDLLG--NGLDYMDRSDHGIDQLESNRDFLQSIEDYVWSKTKQL-QPVTGTDLDTPDGQM 1033
Query: 533 GSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQ 592
+ +T + A + F K + PG VG + AQSIGEP TQ
Sbjct: 1034 A----------ISHT-AKLSAKTLTAFVTSCLTKYKKAQVEPGHAVGAVGAQSIGEPGTQ 1082
Query: 593 MTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
MTL TFHFAG M++T G+PR++EI+ A+K I TP
Sbjct: 1083 MTLKTFHFAGVAGMSITQGVPRIKEII-NASKEISTP 1118
Score = 63.2 bits (152), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 3/115 (2%)
Query: 893 VNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNG 952
N+I GIEAA I+ E+ V + +DPRH+ L+AD MT+ G + + R G
Sbjct: 1286 TNNIMETKDVLGIEAARTTIVDEISEVMK--DMRIDPRHMQLLADVMTYKGEVLGITRFG 1343
Query: 953 I-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+ ++ S +Q +FE + + A GR D + S +++G+ GTG ++
Sbjct: 1344 LAKMRDSVLQLASFEKTADHLFDAGGAGRTDLVEGVSECIIMGKSVSLGTGAMEI 1398
>gi|392869043|gb|EAS30407.2| DNA-directed RNA polymerase III largest subunit [Coccidioides immitis
RS]
Length = 1444
Score = 243 bits (619), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 196/637 (30%), Positives = 304/637 (47%), Gaps = 68/637 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + PK+G P+ IQD + + LS +D F R + L
Sbjct: 530 RAEAMELMGVKNNLATPKNGEPIIAAIQDFITAAYLLSSKDNFYDRGSFTQTCGYML-QP 588
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
T+ PP + KP LWTGKQV + V++ + + V++ L + + + T
Sbjct: 589 GTKFDLPPPAVLKPQMLWTGKQVFN-VLMRPSKESPVLV---NLDAACREFRAPKGTPRD 644
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLV-HAVWDTHGAEHAISLLSCLAKLFT 191
L D + IR+ E++ G++DK GS + V + + G + A ++ L++L
Sbjct: 645 LDPN--DGWLCIRNSEIMCGVMDKSTIGSGKKDSVFYVMLRDFGPQVAAEAMNRLSRLSA 702
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQ 251
+ +GF++G+ D+ + + +++ +A A C+AL + L + +L+
Sbjct: 703 RWFTNIGFSIGITDVYPGDSLLQAKKQLVEEAY-----AQCDAL-IQL-----FKAGKLE 751
Query: 252 EAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVN 311
+A Q ++ Q +L KV + C+ E + + N+ M SG+KGST+N
Sbjct: 752 KAPGGDEQ--QNMESQISGILSKVRQQAGEQCIAE--LSKW--NSPLIMATSGSKGSTIN 805
Query: 312 TMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHC 371
Q+ L+GQ + G+R RTLP F Y P A GFV F +G+ P EFFFH
Sbjct: 806 VAQMIALVGQQIIAGQRVQDGFQDRTLPHFPKYARQPPAKGFVRNSFFSGLIPSEFFFHA 865
Query: 372 MAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTK 431
++GREGLIDTAVKT+ +GY+ R L+K LE L+ YD TVR+S +++Q YG+D LD
Sbjct: 866 ISGREGLIDTAVKTAETGYMSRRLMKSLEDLSSRYDDTVRNSSSNIVQFQYGDDKLDPVD 925
Query: 432 RQYLT-----DKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFS 486
+ D+ F+ E K LL + L +L +
Sbjct: 926 MEGKAKPVHFDRTFTHAETTT----YSKEDRGLLPSEVIDLCRQML-------------A 968
Query: 487 PHRTKFT-MDLLEQWYQLDDKA-----RKKYRKKFKACPQPLISTFQPDAHFGSISENLA 540
P R K DLL + D++ + + + F + I H S++ A
Sbjct: 969 PERAKLDRFDLLGNSLEYTDRSDHGIDQLESNRDFLQSIEDYIQAKADRLH--SVTGTEA 1026
Query: 541 DSVVKYTKGRTDASHVDK--------FYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQ 592
D++ +G+ SH K F K + PG VG + AQSIGEP TQ
Sbjct: 1027 DTL----EGQMALSHTVKLSAKTLTTFITSCLTKYKKAQVEPGHAVGAVGAQSIGEPGTQ 1082
Query: 593 MTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
MTL TFHFAG M++T G+PR++EI+ A+K I TP
Sbjct: 1083 MTLKTFHFAGVAGMSITQGVPRIKEII-NASKEISTP 1118
Score = 66.6 bits (161), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 3/115 (2%)
Query: 893 VNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNG 952
N+I GIEAA I+ E+ +V GI DPRH+ L+AD MT+ G + + R G
Sbjct: 1294 TNNIMETKDVLGIEAARTTIVDEISDVMKDMGI--DPRHMQLLADVMTYKGEVLGITRFG 1351
Query: 953 I-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+ ++ S +Q +FE + + A GR D + S ++LG+ GTG ++
Sbjct: 1352 LAKMRDSVLQLASFEKTADHLFDAGGAGRTDLVEGVSECIILGKSVSLGTGAMEM 1406
>gi|397135820|gb|AFO11405.1| RNA polymerase I, partial [Saccharomycopsis capsularis]
Length = 871
Score = 242 bits (618), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 156/424 (36%), Positives = 237/424 (55%), Gaps = 41/424 (9%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
SH ++E L V Q + P+ P+ G++QD + K++L+D F+ + MN+ Y
Sbjct: 307 SHETRSELKNLAAVPLQIISPQSNKPVMGIVQDTLCGVRKMTLKDIFIEYDQVMNICY-- 364
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGS 128
I + PTI KP PLWTGKQVLS I P+ +IR E K + S
Sbjct: 365 -WIKDWNGIVPQPTILKPKPLWTGKQVLSMGI----PEGINLIRFEE-------KTTYLS 412
Query: 129 TQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAK 188
Q D + I +GE++ G+++KK GS+ GL+H V+ G + L + K
Sbjct: 413 PQ--------DDGMLIVNGEIMFGVVNKKTVGSSAGGLIHTVFREKGHKVCAQLFGNIQK 464
Query: 189 LFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISS 248
+ +L GF++G+ D + + + T IN+A++ E +A L +P +
Sbjct: 465 IVNYWLLHNGFSIGIGDTIADKTTMTRITTTINEAKQKVQEVILDAHANRLQPEPGMT-- 522
Query: 249 QLQEAY-ASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKG 307
L+EA+ A++ Q LL+K +++ + + L + +NN++ MV SG+KG
Sbjct: 523 -LREAFEANVAQ-----------LLNKARDDVGKYS-EKSLKD---SNNVKQMVISGSKG 566
Query: 308 STVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEF 367
S +N Q+S +GQ +EGKR + RTLP F + SP + GF++ ++ G+ PQEF
Sbjct: 567 SFINISQMSACVGQQMVEGKRIPFGFADRTLPHFTKDDFSPESKGFIENSYLRGLTPQEF 626
Query: 368 FFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL 427
FFH MAGREGLIDTAVKT+ +GY+QR LVK LE +TVHYD TVR+S +++Q +YGEDGL
Sbjct: 627 FFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDITVHYDGTVRNSTGTVLQFIYGEDGL 686
Query: 428 DVTK 431
D T+
Sbjct: 687 DGTQ 690
>gi|237835339|ref|XP_002366967.1| DNA-directed RNA polymerase I largest subunit, putative [Toxoplasma
gondii ME49]
gi|211964631|gb|EEA99826.1| DNA-directed RNA polymerase I largest subunit, putative [Toxoplasma
gondii ME49]
Length = 2768
Score = 242 bits (618), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 167/487 (34%), Positives = 240/487 (49%), Gaps = 62/487 (12%)
Query: 260 FRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLL 319
F +D ++S + KV + + + FP N M++SG+KGS VN IS L
Sbjct: 1614 FNEMLDAFFQSAMGKVASKSTDIMKGSYFLYRFPRNGFASMIKSGSKGSNVNFAMISVFL 1673
Query: 320 GQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLI 379
GQ LEG+R M S R+LP+FLP++ RA GF+ F++G++ +E+FFHCMAGREGL+
Sbjct: 1674 GQQSLEGQRVKFMTSDRSLPAFLPFDFGSRARGFITSSFLSGLKEEEYFFHCMAGREGLV 1733
Query: 380 DTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQ 439
DTAVKT++SGYLQR + K LE LTV YD +VRD+D S++Q +YG+DG D R LT ++
Sbjct: 1734 DTAVKTAKSGYLQRSVTKGLEALTVRYDGSVRDADDSIVQFVYGDDGRDPAHR--LTFEK 1791
Query: 440 FSFLEDNIKWICSYKVILNLLKKHPLSLA---------------LLLLLT------FKSS 478
L +N IL + P L+ L+ T +
Sbjct: 1792 IDMLLEN-------PAILQRVHAPPAELSNGKQSANTKPGASEDLVADATDDAECLIQGC 1844
Query: 479 GKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISEN 538
G P +F D+ + DKA Y A + + + S SE
Sbjct: 1845 GSPLTCLGVTAFQFENDM----QLVVDKAVASYESLRAAYSRTRETRHKKKRRKESGSEV 1900
Query: 539 LADSVVKYTKGRT-DASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNT 597
S + + + ++K +I++K + PGE VG +AAQSIGEP+TQMTLNT
Sbjct: 1901 SGASAARDARTTGLEKEELEKILRVIYHKCCMP---PGEAVGCVAAQSIGEPATQMTLNT 1957
Query: 598 FHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPF------LPDMPK---------- 641
FH AG G NVT+GIPRLRE+L KTP + IP L D P
Sbjct: 1958 FHLAGHGAANVTMGIPRLRELLQQGA-VTKTPILYIPLRTAANRLQDSPNADLEAREELD 2016
Query: 642 ----LEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCFIPAHMYRDKT 697
L + A +S T +AD + V ++ + P P+ +P ++ R+ +
Sbjct: 2017 EGRVLVRNAGMALRSFTSFGLADCVHSVGVEANVCYQP-PNCPKGCPAFHLPPYVSRNNS 2075
Query: 698 --SVKPS 702
S+ PS
Sbjct: 2076 AQSIAPS 2082
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 76/127 (59%), Gaps = 1/127 (0%)
Query: 869 LKTDGINVNFISQYR-HLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 927
++ +G N +I + + +D N + ND+ + YGIEAA + RE++ VF+ YGI+V
Sbjct: 2505 IQCEGSNFGWIHRMKDEAIDHNGILTNDVRAVLKYYGIEAARVCLARELERVFSAYGIKV 2564
Query: 928 DPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAP 987
D RHL+L+AD+MTH GT NR G+ + + +M++E + + +A + DSL P
Sbjct: 2565 DYRHLALIADFMTHGGTLRPFNRLGMAASNAPFLQMSYETSFKFLTEACERAAVDSLSTP 2624
Query: 988 SARVMLG 994
S +++G
Sbjct: 2625 SGSLVVG 2631
Score = 79.3 bits (194), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 82/193 (42%), Gaps = 25/193 (12%)
Query: 61 YMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLT---------------- 104
Y + + C N + PP I P P+WTGKQV++ ++ L
Sbjct: 1020 YRRQLIEQTCRSNCRLHVEPPAILWPKPMWTGKQVITCILKTLVDGMAASRFSQCRRSRQ 1079
Query: 105 --------PKDKVIIRHGELLSGILDKKQFGSTQYGLVHAVWDTHVTI-RHGELLSGILD 155
P D+ + E ++ K G G + V I R+ ELL G+ D
Sbjct: 1080 GAQGLGSKPTDEDALNRYEGVNLTGKAKTPGDAWGGAEDGDKEEEVVIIRNSELLQGVFD 1139
Query: 156 KKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRK 215
K QFG T GLVH V+ G A LL LA LF +L+ T D ++R+E + +
Sbjct: 1140 KAQFGPTAGGLVHCVFLLFGGAAAGLLLQSLAALFCAFLKLRSATTSPADFVMRREGELQ 1199
Query: 216 RTKIINKARRLGT 228
R ++ + + GT
Sbjct: 1200 RQALVRQVIQAGT 1212
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 10 HFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL 69
H +AEA++++N +LVPK G PL GLIQD ++G L+ RDTFL + LVY L
Sbjct: 901 HLARAEAAYILNADCHFLVPKSGEPLRGLIQDLCLAGCLLTARDTFLDIHSFQTLVYSGL 960
Query: 70 -CILNT 74
C L++
Sbjct: 961 SCYLDS 966
>gi|221503888|gb|EEE29572.1| RNA polymerase Rpb1 domain-containing protein, putative [Toxoplasma
gondii VEG]
Length = 2676
Score = 242 bits (618), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 169/489 (34%), Positives = 241/489 (49%), Gaps = 66/489 (13%)
Query: 260 FRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLL 319
F +D ++S + KV + + + FP N M++SG+KGS VN IS L
Sbjct: 1522 FNEMLDAFFQSAMGKVASKSTDIMKGSYFLYRFPRNGFASMIKSGSKGSNVNFAMISVFL 1581
Query: 320 GQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLI 379
GQ LEG+R M S R+LP+FLP++ RA GF+ F++G++ +E+FFHCMAGREGL+
Sbjct: 1582 GQQSLEGQRVKFMTSDRSLPAFLPFDFGSRARGFITSSFLSGLKEEEYFFHCMAGREGLV 1641
Query: 380 DTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQ 439
DTAVKT++SGYLQR + K LE LTV YD +VRD+D S++Q +YG+DG D R LT ++
Sbjct: 1642 DTAVKTAKSGYLQRSVTKGLEALTVRYDGSVRDADDSIVQFVYGDDGRDPAHR--LTFEK 1699
Query: 440 FSFLEDNIKWICSYKVILNLLKKHPLSLA---------------LLLLLT------FKSS 478
L +N IL + P L+ L+ T +
Sbjct: 1700 IDMLLEN-------PAILQRVHAPPAELSNGKQSANTKPGASEDLVADATDDAECLIQGC 1752
Query: 479 GKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISEN 538
G P +F D+ + DKA Y A + + + S SE
Sbjct: 1753 GSPLTCLGVTAFQFENDM----QLVVDKAVASYESLRAAYSRTRETRHKKKRRKESGSEV 1808
Query: 539 LADSVVKYTKGRT---DASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTL 595
S + RT + ++K +I++K + PGE VG +AAQSIGEP+TQMTL
Sbjct: 1809 SGASAAR--DARTTGLEKEELEKILRVIYHKCCMP---PGEAVGCVAAQSIGEPATQMTL 1863
Query: 596 NTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPF------LPDMPK-------- 641
NTFH AG G NVT+GIPRLRE+L KTP + IP L D P
Sbjct: 1864 NTFHLAGHGAANVTMGIPRLRELLQQGA-VTKTPILYIPLRTAANRLQDSPNADLEAREE 1922
Query: 642 ------LEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCFIPAHMYRD 695
L + A +S T +AD + V ++ + P P+ +P ++ R+
Sbjct: 1923 LDEGRVLVRNAGMALRSFTSFGLADCVHSVGVEANVCYQP-PNCPKGCPAFHLPPYVSRN 1981
Query: 696 KT--SVKPS 702
+ S+ PS
Sbjct: 1982 NSAQSIAPS 1990
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 76/127 (59%), Gaps = 1/127 (0%)
Query: 869 LKTDGINVNFISQYR-HLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 927
++ +G N +I + + +D N + ND+ + YGIEAA + RE++ VF+ YGI+V
Sbjct: 2413 IQCEGSNFGWIHRMKDEAIDHNGILTNDVRAVLKYYGIEAARVCLARELERVFSAYGIKV 2472
Query: 928 DPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAP 987
D RHL+L+AD+MTH GT NR G+ + + +M++E + + +A + DSL P
Sbjct: 2473 DYRHLALIADFMTHGGTLRPFNRLGMAASNAPFLQMSYETSFKFLTEACERAAVDSLSTP 2532
Query: 988 SARVMLG 994
S +++G
Sbjct: 2533 SGSLVVG 2539
Score = 79.3 bits (194), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 82/193 (42%), Gaps = 25/193 (12%)
Query: 61 YMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLT---------------- 104
Y + + C N + PP I P P+WTGKQV++ ++ L
Sbjct: 928 YRRQLIEQTCRSNCRLHVEPPAILWPKPMWTGKQVITCILKTLVDGMAASRFSQCRRSRQ 987
Query: 105 --------PKDKVIIRHGELLSGILDKKQFGSTQYGLVHAVWDTHVTI-RHGELLSGILD 155
P D+ + E ++ K G G + V I R+ ELL G+ D
Sbjct: 988 GAQGLGSKPTDEDALNRYEGVNLTGKAKTPGDAWGGAEDGDKEEEVVIIRNSELLQGVFD 1047
Query: 156 KKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRK 215
K QFG T GLVH V+ G A LL LA LF +L+ T D ++R+E + +
Sbjct: 1048 KAQFGPTAGGLVHCVFLLFGGAAAGLLLQSLAALFCAFLKLRSATTSPADFVMRREGELQ 1107
Query: 216 RTKIINKARRLGT 228
R ++ + + GT
Sbjct: 1108 RQALVRQVIQAGT 1120
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 10 HFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL 69
H +AEA++++N +LVPK G PL GLIQD ++G L+ RDTFL + LVY L
Sbjct: 809 HLARAEAAYILNADCHFLVPKSGEPLRGLIQDLCLAGCLLTARDTFLDIHSFQTLVYSGL 868
Query: 70 -CILNT 74
C L++
Sbjct: 869 SCYLDS 874
>gi|298709808|emb|CBJ31607.1| RNA polymerase III, largest subunit [Ectocarpus siliculosus]
Length = 1518
Score = 242 bits (617), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 200/667 (29%), Positives = 306/667 (45%), Gaps = 74/667 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEAS LM V + P++G PL QD + + ++ RD F + V +
Sbjct: 568 RAEASQLMAVPYNLVTPRNGEPLVAATQDFLTAAYLITQRDIFFDHETFCK-VASYMGDA 626
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ PP I KP+ LWTGKQ +S +++ + ++K+++ +K + ++
Sbjct: 627 GEHVDIPPPAIMKPVALWTGKQAMS-LMVRPSKENKILVNFES------KEKNYKGNRF- 678
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFG-STQYGLVHAVWDTHGAEHAISLLSCLAKLFT 191
D +V + EL+ G L KK G ++ GL + + HG A ++ LAK+
Sbjct: 679 --LCPSDGYVCYHNSELMCGNLAKKTLGDGSKTGLFYTLIREHGPLEAARCMNRLAKVCA 736
Query: 192 VYLQ-RVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAA--CNALGLPLDTDPEIISS 248
YL GF++G+ D+ E + +++ E N +PL + I S
Sbjct: 737 RYLGGHRGFSIGIEDVTPGAELSALKHELLTDGYTEADEQIRLFNNNRMPLKPGCDAIQS 796
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFP-ANNLQFMVESGAKG 307
++ + LL K+ G ++ P N+ + M E G+KG
Sbjct: 797 ---------------LESELNGLLGKLRETAGT-----GAMKALPWVNSPRIMAECGSKG 836
Query: 308 STVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEF 367
S +N Q+ +GQ + GKR RTLP F + P A GFV F +G+ EF
Sbjct: 837 SPLNISQMIACVGQQSVGGKRIQNGFVNRTLPHFEANSLFPAAKGFVANSFYSGLTATEF 896
Query: 368 FFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL 427
FFH M GREGL+DTAVKT+ +GY+ R L+K LE L++ YD TVR+S+ ++IQ +YG+DGL
Sbjct: 897 FFHTMGGREGLVDTAVKTAETGYMARRLMKALEDLSMQYDRTVRNSEQTIIQFVYGDDGL 956
Query: 428 DVTKRQYLTDKQFSFLED--NIKWICSYKVILNLLKKHPLSL--------ALLLLLTFKS 477
+ + + + +D ++ Y ++ + L L L L
Sbjct: 957 NPSCMEANMRVKIRGADDFLDVGQPVDYAKLMTQVTSTNLFLHEKTLSPKELRQLCNRVL 1016
Query: 478 SGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFK---ACPQPLIST-------FQ 527
+GK P ++T + L+Q+ Q RK R+ + P + T
Sbjct: 1017 AGKEFQQILPQGQRWTEE-LKQYLQDLVTTRKGLREGLRLPTEAPATAVGTAAWRAEKLG 1075
Query: 528 P--DAHF----------GSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPG 575
P A F G+ E+ A +V R AS +F K +L PG
Sbjct: 1076 PAGSAKFKDWWEFAGIEGTPEESEAGELVVSNTCRVTASQAKEFLRRCLDKYKRALVEPG 1135
Query: 576 E----NVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSM 631
E VG + AQSI EP TQMTL TFHFAG MNVTLG+PRL+EI+ A+K I TP +
Sbjct: 1136 EASLSRVGAIGAQSISEPGTQMTLKTFHFAGVASMNVTLGVPRLKEII-NASKNISTPII 1194
Query: 632 EIPFLPD 638
+ D
Sbjct: 1195 TAKLVQD 1201
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 69/130 (53%), Gaps = 1/130 (0%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D + N I + T G+EAA +I E+ + YGI +D RHL L+AD MT G
Sbjct: 1379 IDGTRTRSNHIIEVFHTLGVEAARIIISEEITYIMKAYGISIDRRHLLLLADVMTFKGEV 1438
Query: 946 VAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
+ + R G+ ++ S + +FE + + AS+ GR D++ S +++G GTGLF
Sbjct: 1439 LGITRFGVSKMRESVLMLASFEKTTDHLFDASVHGRHDAIVGVSECIIMGIPIPLGTGLF 1498
Query: 1005 QLRNREKKKK 1014
+L E K K
Sbjct: 1499 KLLMNEDKIK 1508
>gi|124506109|ref|XP_001351652.1| RNA polymerase I [Plasmodium falciparum 3D7]
gi|23504580|emb|CAD51459.1| RNA polymerase I [Plasmodium falciparum 3D7]
Length = 2914
Score = 242 bits (617), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 153/412 (37%), Positives = 220/412 (53%), Gaps = 50/412 (12%)
Query: 254 YASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTM 313
Y F ID ++ L +V++ N + L+ F N M+ +GAKGS VN
Sbjct: 1767 YLKRSDFDNLIDSLFQPYLCRVSSGTNNLINMNNLMNKFLNNGFSNMIFTGAKGSKVNYS 1826
Query: 314 QISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMA 373
I +L Q LEGKR M SG+TLPSF Y+ R+ G + F+ G++PQE+FFHCM+
Sbjct: 1827 MICGMLDQQYLEGKRVPRMRSGKTLPSFHRYDYGARSCGLITDCFLEGLRPQEYFFHCMS 1886
Query: 374 GREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQ 433
GREGLIDTAVKT++SGY+QRCL+K +E + +HYD TVR+ D S+IQ LYGEDG+D +K
Sbjct: 1887 GREGLIDTAVKTAKSGYIQRCLIKCMESVILHYDGTVRNEDNSIIQFLYGEDGIDPSKTA 1946
Query: 434 YLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPHRTKFT 493
YL + +LL + LS + L S N
Sbjct: 1947 YLD------------------LSKDLLHNYHLSFSKYLNNNMHSKILNN----------- 1977
Query: 494 MDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISE----NLADSVVKYTKG 549
+L + + +D K +PLIS + P + GS+S+ L ++++
Sbjct: 1978 QELFLKHEKDNDT---------KDNEEPLISKYNPYTYIGSVSDKFNNKLNNTLLWNDLN 2028
Query: 550 RTDASHVDKFYD-----MIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRG 604
+ +V +D ++ K SL NPGE++G+L AQS GEP+TQMTLNTFH AG
Sbjct: 2029 FPEYENVPMNFDTLSSSLLKSKYYNSLCNPGESIGILVAQSFGEPATQMTLNTFHLAGTE 2088
Query: 605 DMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRI 656
NVT+GIPRL+EI + +K P + +P + L+ AN++ +T I
Sbjct: 2089 --NVTMGIPRLKEIF-LTSKLTSKPMIYVPIKLQVDNLKNDANKMKNYITSI 2137
Score = 99.8 bits (247), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 68/118 (57%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D KLY NDI+ + TYGIEA I +E+K VF YGI++D RHLS ++D+MTH+G
Sbjct: 2785 IDKTKLYCNDIYAIVKTYGIEAGRLCITKELKKVFDAYGIQIDFRHLSFISDFMTHTGDL 2844
Query: 946 VAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGL 1003
A NR+G+ + KM+FE + Q + D L S+ + G+ + GT L
Sbjct: 2845 KAFNRHGLGYFRNVFHKMSFECATNFLIQGCIHNSIDYLSTASSSLFFGKHIKVGTNL 2902
Score = 73.6 bits (179), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 20/158 (12%)
Query: 76 IRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYGLVH 135
I T P I P LWTGKQ++++++ T DKV I + +F +T G+ +
Sbjct: 1097 IITEEPAILYPKKLWTGKQLITSIL--KTVIDKVAIE----TYNKYNDNEFMNTYKGINY 1150
Query: 136 A--------VW------DTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAIS 181
+W + V I++ ELL G+LDK FG++ LVH + G + +
Sbjct: 1151 VAKAKTSPDLWSFDPLKENEVIIKNSELLQGVLDKLHFGASSNSLVHLCHELFGPKTSAV 1210
Query: 182 LLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKI 219
+L C +LF +LQ G +L + D ++ + ++++ I
Sbjct: 1211 MLDCFGRLFINFLQLRGTSLSLYDFILNKNAKKEKSLI 1248
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA+ LMN + KDGSPL GL QD ++ G L+ +TFL EY NL+ C L
Sbjct: 899 RAEATHLMNCDFLFTSFKDGSPLRGLAQDFILGGLHLTSLETFLNYDEYCNLL---QCSL 955
Query: 73 NTEI 76
N+ I
Sbjct: 956 NSLI 959
>gi|414322|gb|AAA72349.1| unnamed protein product [Plasmodium falciparum]
Length = 2910
Score = 242 bits (617), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 153/412 (37%), Positives = 220/412 (53%), Gaps = 50/412 (12%)
Query: 254 YASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTM 313
Y F ID ++ L +V++ N + L+ F N M+ +GAKGS VN
Sbjct: 1766 YLKRSDFDNLIDSLFQPYLCRVSSGTNNLINMNNLMNKFLNNGFSNMIFTGAKGSKVNYS 1825
Query: 314 QISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMA 373
I +L Q LEGKR M SG+TLPSF Y+ R+ G + F+ G++PQE+FFHCM+
Sbjct: 1826 MICGMLDQQYLEGKRVPRMRSGKTLPSFHRYDYGARSCGLITDCFLEGLRPQEYFFHCMS 1885
Query: 374 GREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQ 433
GREGLIDTAVKT++SGY+QRCL+K +E + +HYD TVR+ D S+IQ LYGEDG+D +K
Sbjct: 1886 GREGLIDTAVKTAKSGYIQRCLIKCMESVILHYDGTVRNEDNSIIQFLYGEDGIDPSKTA 1945
Query: 434 YLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPHRTKFT 493
YL + +LL + LS + L S N
Sbjct: 1946 YLD------------------LSKDLLHNYHLSFSKYLNNNMHSKILNN----------- 1976
Query: 494 MDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISE----NLADSVVKYTKG 549
+L + + +D K +PLIS + P + GS+S+ L ++++
Sbjct: 1977 QELFLKHEKDNDT---------KDNEEPLISKYNPYTYIGSVSDKFNNKLNNTLLWNDLN 2027
Query: 550 RTDASHVDKFYD-----MIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRG 604
+ +V +D ++ K SL NPGE++G+L AQS GEP+TQMTLNTFH AG
Sbjct: 2028 FPEYENVPMNFDTLSSSLLKSKYYNSLCNPGESIGILVAQSFGEPATQMTLNTFHLAGTE 2087
Query: 605 DMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRI 656
NVT+GIPRL+EI + +K P + +P + L+ AN++ +T I
Sbjct: 2088 --NVTMGIPRLKEIF-LTSKLTSKPMIYVPIKLQVDNLKNDANKMKNYITSI 2136
Score = 99.8 bits (247), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 68/118 (57%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D KLY NDI+ + TYGIEA I +E+K VF YGI++D RHLS ++D+MTH+G
Sbjct: 2784 IDKTKLYCNDIYAIVKTYGIEAGRLCITKELKKVFDAYGIQIDFRHLSFISDFMTHTGDL 2843
Query: 946 VAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGL 1003
A NR+G+ + KM+FE + Q + D L S+ + G+ + GT L
Sbjct: 2844 KAFNRHGLGYFRNVFHKMSFECATNFLIQGCIHNSIDYLSTASSSLFFGKHIKVGTNL 2901
Score = 73.2 bits (178), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 20/158 (12%)
Query: 76 IRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYGLVH 135
I T P I P LWTGKQ++++++ T DKV I + +F +T G+ +
Sbjct: 1096 IITEEPAILYPKKLWTGKQLITSIL--KTVIDKVAIE----TYNKYNDNEFMNTYKGINY 1149
Query: 136 A--------VW------DTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAIS 181
+W + V I++ ELL G+LDK FG++ LVH + G + +
Sbjct: 1150 VAKAKTSPDLWSFDPLKENEVIIKNSELLQGVLDKLHFGASSNSLVHLCHELFGPKTSAV 1209
Query: 182 LLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKI 219
+L C +LF +LQ G +L + D ++ + ++++ I
Sbjct: 1210 MLDCFGRLFINFLQLRGTSLSLYDFILNKNAKKEKSLI 1247
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA+ LMN + KDGSPL GL QD ++ G L+ +TFL EY NL+ C L
Sbjct: 898 RAEATHLMNCDFLFTSFKDGSPLRGLAQDFILGGLHLTSLETFLNYDEYCNLL---QCSL 954
Query: 73 NTEI 76
N+ I
Sbjct: 955 NSLI 958
>gi|321451320|gb|EFX63013.1| hypothetical protein DAPPUDRAFT_67470 [Daphnia pulex]
Length = 1391
Score = 241 bits (616), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 194/659 (29%), Positives = 310/659 (47%), Gaps = 69/659 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALC-- 70
+AEA LM S + P++G L IQD + L+L+D F RA+ +V L
Sbjct: 520 RAEALILMTNKSNLVTPRNGELLIAAIQDFITGAYLLTLKDAFFDRAKTCQMVASMLAGD 579
Query: 71 ILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+N I+ PP I KP LW+GKQ+ S +I+ P D++ + L K ++
Sbjct: 580 EVNMVIKLPPPCIQKPAALWSGKQIFS-LILRPNPGDRIKVN--------LRTKGKEYSK 630
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
V D + +R+ E+L+G +DK GS ++ + + + +G + AI + L ++
Sbjct: 631 KNEEFCVNDGFLLVRNSEVLAGCVDKSTIGSGSKINIFYVLLRDYGEDFAIQAMWKLGRV 690
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALG--LPLDTDPEIIS 247
+ Y+ GF++G+ D+ + +++ K+++ + C+ L + P +
Sbjct: 691 ASYYMMNRGFSIGIGDVTPGKTLLKEKQKLLDSGF-----SKCDEYIRLLTIGQSPCLPG 745
Query: 248 SQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKG 307
++E+ S +I ++ + D+ +VC E P+N+ M +SG+KG
Sbjct: 746 CNVEESLES------KIHKELSGIRDQA----GEVCKKE----LHPSNSPLVMSKSGSKG 791
Query: 308 STVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEF 367
S +N Q+ +GQ L GKR R+LP F + P A GFV F +G+ P E
Sbjct: 792 SYINISQMIACVGQQALNGKRVPNGFEDRSLPHFKRHSKIPAAKGFVSNSFYSGLSPTEL 851
Query: 368 FFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL 427
FFH M+GREGL+DTAVKT+ Y+QR L+K LE L YD TVR+S +IQ +YG DGL
Sbjct: 852 FFHAMSGREGLVDTAVKTAEPMYMQRRLIKFLEDLCCQYDSTVRNSAGEIIQFVYGGDGL 911
Query: 428 DVT---KRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFI 484
D T + D Q F +++K + + PL + G + I
Sbjct: 912 DPTYMEAKDRPVDFQRGF--EHVKAASPFP------DEEPLD-------DIELKGAFDAI 956
Query: 485 FSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVV 544
H K D ++ ++ +++ K K + ++ DA A + V
Sbjct: 957 METHTFKKLGDDIKHELRVFVESQVKRIKSVR-------DIYKNDAR--------ASNPV 1001
Query: 545 KYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRG 604
+ R + +F D K + PG VG L AQSI EP T+MTL F AG
Sbjct: 1002 EKHLERITVGQLVEFCDFAKEKYERAKIEPGTAVGALCAQSIAEPCTKMTLKPFQLAGVA 1061
Query: 605 DMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLE 663
MN T G+ RL EI+ A+KAI TP + L D + A R+ + + T+ +V +
Sbjct: 1062 SMNTTQGVHRLIEII-NASKAISTPVISTQLLKD--DDPEYARRVKGRIEKTTLGEVTQ 1117
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 66/114 (57%), Gaps = 1/114 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N+I + ST GIEAA +I +E+K +G+ VD RH++L++D M+ G + + R+G+
Sbjct: 1251 NNILEVFSTLGIEAAKSMIAKEIKFTMESHGMSVDRRHVALLSDLMSCRGEILGITRHGL 1310
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
++ S + +FE + + A+ G+ED + S +++G GTG F+L
Sbjct: 1311 AKMKQSVLMLASFESTSDHLFDAAYYGQEDEVTGVSECIIMGVPMAIGTGAFKL 1364
>gi|221043166|dbj|BAH13260.1| unnamed protein product [Homo sapiens]
Length = 1369
Score = 241 bits (616), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 193/621 (31%), Positives = 287/621 (46%), Gaps = 78/621 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF RA+ ++ L
Sbjct: 516 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 575
Query: 73 NTEI--RTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ +I R PPTI KP+ LWTGKQ+ S + L P D +R G KQ+
Sbjct: 576 DEKIKVRLPPPTILKPVTLWTGKQIFSVI---LRPSDDNPVRANLRTKG----KQYCGKG 628
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L D++VTI++ EL+SG +DK GS ++ + + + G A +S LA+L
Sbjct: 629 EDL--CANDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARL 686
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
VYL GF++G+ D+ Q + + +++N + C+ L+T Q
Sbjct: 687 APVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYK-----KCDEYIEALNTG----KLQ 737
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
Q + A I ++ L + ++ CL E +N+ M G+KGS
Sbjct: 738 QQPGCTAEETLEALILKE----LSVIRDHAGSACLRE----LDKSNSPLTMALCGSKGSF 789
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ +GQ + G R R+LP F + P A GFV F +G+ P EFFF
Sbjct: 790 INISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFF 849
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H MAGREGL+DTAVKT+ +GY+QR LVK LE L YD+TVR S +IQ +YG DGLD
Sbjct: 850 HTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDP 909
Query: 430 TKRQYLTDK-QFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPH 488
+ + +F + DNI K + + LS L+L T K F+
Sbjct: 910 AAMEGKDEPLEFKRVLDNI------KAVFPCPSEPALSKNELILTTESIMKKSEFLCC-- 961
Query: 489 RTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK 548
+ F ++ + + +K +K K +G + V Y
Sbjct: 962 QDSFLQEIKKFIKGVSEKIKKTRDK------------------YGINDNGTTEPRVLYQL 1003
Query: 549 GRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
R + V+KF + K + + PG VG L Q MN+
Sbjct: 1004 DRITPTQVEKFLETCRDKYMRAQMEPGSAVGALCTQ---------------------MNI 1042
Query: 609 TLGIPRLREILMMATKAIKTP 629
TLG+PR++EI+ A+KAI TP
Sbjct: 1043 TLGVPRIKEII-NASKAISTP 1062
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 67/117 (57%), Gaps = 1/117 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N+ + + T GIEAA II E++ +G+ +D RH+ L++D MT+ G + + R G+
Sbjct: 1228 NNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGL 1287
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNR 1009
++ S + +FE + + A+ G++DS+ S +++G GTGLF+L ++
Sbjct: 1288 AKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHK 1344
>gi|324499645|gb|ADY39853.1| DNA-directed RNA polymerase I subunit RPA1 [Ascaris suum]
Length = 909
Score = 241 bits (616), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 129/322 (40%), Positives = 187/322 (58%), Gaps = 10/322 (3%)
Query: 2 DGWTQNASHFLK-----AEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG N HF++ E + + NV S +LVPKDG+PL GLIQDHV+SG L+LR F
Sbjct: 558 DGDEMNG-HFVQNRIAQTEVAEIANVGSNFLVPKDGTPLLGLIQDHVVSGVLLTLRGRFF 616
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL 116
+ ++M+LV A + I PP++ KP LW+GKQV+ST+++N P+ + +I
Sbjct: 617 NKEDFMHLVLAAFAQTSQRIVLPPPSMLKPQKLWSGKQVISTILLNCIPRGQPLINLTSK 676
Query: 117 LSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGA 176
L + G+ + ++ V R ELL G+LDK+ +GSTQYGL+H W+ +G
Sbjct: 677 AKTPLSCWKVGNLPAPKFE-MSESEVIFRQAELLVGVLDKQHYGSTQYGLIHCCWELYGH 735
Query: 177 EHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALG 236
A S+LSC ++LFT +LQ GFTLGV DILV ++ D++R ++I R+ G + G
Sbjct: 736 RCATSILSCFSRLFTTHLQYHGFTLGVADILVNKKADKQRKRVIRALRKCGDDVVKECFG 795
Query: 237 LPLDTDPEIISSQLQEAYASI---PQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFP 293
L D I + AY + Q Q+D + K L+K + IN C+P GLI FP
Sbjct: 796 LDTDASQNEIRDVMAGAYCNPRGEDQSVQQLDFRMKEKLNKFSEQINSACVPTGLIRSFP 855
Query: 294 ANNLQFMVESGAKGSTVNTMQI 315
N LQ M+ SG+KG+ VN+MQ+
Sbjct: 856 RNALQMMILSGSKGTMVNSMQV 877
>gi|380495147|emb|CCF32618.1| RNA polymerase Rpb1 [Colletotrichum higginsianum]
Length = 1456
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 205/698 (29%), Positives = 318/698 (45%), Gaps = 93/698 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V PK+G P+ QD + + LS +D F R + Y + ++
Sbjct: 527 RAEAINLMGVKHNLATPKNGEPVIAATQDFITAAYLLSSKDNFFDRKTF---TYICMHMM 583
Query: 73 NTEIRT--LPPTIWKPMPLWTGKQVLSTVI---------INLTPKDKVI-IRHGELLSGI 120
+ ++ PP + KP LWTGKQV S ++ INL K + R G+
Sbjct: 584 DGKVHLDLPPPAVLKPKALWTGKQVFSMMMRPNKDSPVKINLDAKCREYKARAGQCPD-- 641
Query: 121 LDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLV-HAVWDTHGAEHA 179
+D + D + IR+ E++ G++DK G + V + + G + A
Sbjct: 642 MDPE--------------DAWLVIRNSEVMCGVMDKSTVGDGKKDSVFYVILRDFGPDAA 687
Query: 180 ISLLSCLAKLFTVYLQRVGFTLGVRDILVRQER-DRKRTKIINKARRLGTEAACNALGLP 238
+ ++ LAKL +L GF++G+ D+ ++ D+KRT + N A + +
Sbjct: 688 VVTMNRLAKLCARHLTNRGFSIGIGDVFPTEKLLDKKRTLVKN---------ASIEVDVL 738
Query: 239 LDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQ 298
+D + ++L++A ++ LL K+ C IE NN
Sbjct: 739 ID---KYKKNKLEKATGC--SMEQTLENSISGLLSKLRTQAGSHC-----IETLSKNNAP 788
Query: 299 F-MVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGR 357
M + G+KGS +N Q+ L+GQ + GKR A RTLP F P + GFV+
Sbjct: 789 LVMAKCGSKGSNINVAQMVALVGQQIIGGKRVADGFQDRTLPHFHKNAPQPPSKGFVENS 848
Query: 358 FMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSL 417
F +G+ P EF FH M+GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR S +
Sbjct: 849 FYSGLLPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDDTVRTSGGGI 908
Query: 418 IQVLYGEDGLD-----VTKRQYLTDKQFSFLEDNIKWICSYKVIL---------NLLKKH 463
+Q +G D LD + + D+ FS E N+ W + + +L N+L +
Sbjct: 909 VQFQFGADKLDPVDMEASAKPVNFDRTFSHAE-NLTWDNNERALLPDEIVKYCDNMLSRE 967
Query: 464 PLSL---ALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQ 520
+LL LT + H D L +K R+
Sbjct: 968 RARYPRKSLLGDLTLDYDNEEERYTDEHEG--ARDFLRSLESYVGARAEKLRR------- 1018
Query: 521 PLISTFQPDAHFGSISENLADSVVKYTKGRTDA------SHVDKFYDMIFYKNLLSLANP 574
L+ A S+ ++ + V++ K D + + F + K + P
Sbjct: 1019 -LMEMTGLTATADSMDVDVDEDEVRHKKAFADKVAKMSETTLKLFIRLCLEKYKKAHVEP 1077
Query: 575 GENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIP 634
G VG + AQSIGEP TQMTL TFHFAG M++T G+PR++EI+ A+K I TP + P
Sbjct: 1078 GHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEII-NASKVISTPVITCP 1136
Query: 635 FLPDMPKLEKKANRLAKSMTRITMA-DVLEKVKIKEWL 671
+ + E A R+ K+ T D+L ++ EW
Sbjct: 1137 LVQNR---EMTAARIVKARIEKTFVEDILSYIE-DEWF 1170
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N++ GIEAA I E+ V + +DPRH+ L+AD MT+ G + + R G+
Sbjct: 1309 NNVMECRDVLGIEAARSTIAYEIGEVMG--DMNIDPRHMQLLADVMTYKGEVLGITRFGL 1366
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNR 1009
++ S +Q +FE + + +A+ + D + S +++GQ GTG F + R
Sbjct: 1367 SKMRDSVLQLASFEKTPDHLFEAAAGMKTDQIEGVSECIIMGQTMTVGTGAFHVVRR 1423
>gi|261196045|ref|XP_002624426.1| DNA-directed RNA polymerase III [Ajellomyces dermatitidis SLH14081]
gi|239587559|gb|EEQ70202.1| DNA-directed RNA polymerase III [Ajellomyces dermatitidis SLH14081]
Length = 1456
Score = 241 bits (615), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 205/699 (29%), Positives = 337/699 (48%), Gaps = 82/699 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + PK+G P+ IQD + + LS +D F R + ++ L +L
Sbjct: 530 RAEAMELMGVKNNLATPKNGEPIISAIQDFITAAYMLSSKDVFYDRKAFTHI---CLYML 586
Query: 73 NTEIR--TLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
++ R PP++ KP LWTGKQ+ + V++ + V++ G K G+ +
Sbjct: 587 QSDTRFDLPPPSVIKPQMLWTGKQIFN-VLMRPNKQSPVLVNLDAACRGF--KAPKGTPR 643
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLV-HAVWDTHGAEHAISLLSCLAKL 189
+ W + IR+ E++ G++DK GS + V + + G E A ++ L++L
Sbjct: 644 DLDANDGW---LCIRNSEVMCGVMDKSTIGSGKKDSVFYVMLRDFGPEVAAEGMNRLSRL 700
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEII--- 246
+ +GF++G+ D+ + +++ I+ A A C+ E+I
Sbjct: 701 SARWFTNMGFSIGITDVYPGDKLLEEKSHIVEDAY-----AQCD----------EVIQLF 745
Query: 247 -SSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGA 305
+ +L++A Q ++ +L KV +C+ E + + N+ M SG+
Sbjct: 746 RTGKLEKAPGCDEQM--TMENTISGILSKVRQQAGAICIAE--LSRW--NSPLIMATSGS 799
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS +N Q+ L+GQ + G+R RTLP F + P A GFV F +G+ P
Sbjct: 800 KGSDINVAQMVALVGQQIIGGQRVQDGFQDRTLPHFPKHARQPPAKGFVRNSFFSGLTPT 859
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EF FH ++GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR+S +++Q YG+D
Sbjct: 860 EFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSRYDDTVRNSSSNIVQFQYGDD 919
Query: 426 GLDVT-----KRQYLTDKQFSFLE----DNI-KWICSYKVILNLLKKHPLSLALLLLLTF 475
LD R D+ F+ E DN K + ++I L ++ L+ A L F
Sbjct: 920 KLDPVDMEGRARPVHFDRTFTHCEVTTFDNSDKGLLPDEII--TLCQNLLAPARAKLTRF 977
Query: 476 KSSGKPNFIFSPHRTKFTMDLLEQ----WYQLDDKARKKYRKKFKACPQPLISTFQPDAH 531
GK N ++ R+ +D LE ++D R K ++ +A + H
Sbjct: 978 DLLGK-NLDYN-DRSDHGIDQLESARDFLQSIEDYVRAKA-ERLRAIDGGTKRRGRGIDH 1034
Query: 532 FGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPST 591
+S N S + + + V+ PG VG + AQSIGEP T
Sbjct: 1035 TAKVSTNALTSFITACLTKYKRAQVE----------------PGHAVGAVGAQSIGEPGT 1078
Query: 592 QMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP--SMEIPFLPDMPKLEKKANRL 649
QMTL TFHFAG M++T G+PR++EI+ A+K I TP + E+ D+ + R+
Sbjct: 1079 QMTLKTFHFAGVAGMSITQGVPRIKEII-NASKEISTPVITCELVNKHDLRAAQIVKGRV 1137
Query: 650 AKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCFI 688
K+ R D++ ++ ++W E ++N ++ F I
Sbjct: 1138 EKTFIR----DIIYYIE-EDW--TGNEAYINIKIDFSTI 1169
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 15/142 (10%)
Query: 866 KHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 925
+ + TDGIN + N+I + GIEAA I+ E+ V +
Sbjct: 1276 RDCMTTDGINGHHTR------------TNNIMEARTVLGIEAARTTIVDEISEVMK--DM 1321
Query: 926 EVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSL 984
+DPRH+ L+AD MT+ G + + R G+ ++ S +Q +FE + + A GR D +
Sbjct: 1322 SIDPRHMQLLADVMTYKGEVLGITRFGLAKMRDSVLQLASFEKTADHLFDAGGAGRTDLI 1381
Query: 985 RAPSARVMLGQECRQGTGLFQL 1006
S +++G+ GTG ++
Sbjct: 1382 EGVSECIIVGKSVSLGTGAMEV 1403
>gi|397135922|gb|AFO11456.1| RNA polymerase I, partial [Pachysolen tannophilus]
Length = 870
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 157/420 (37%), Positives = 228/420 (54%), Gaps = 41/420 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S L V Q + P+ P+ G++QD + K++LRD F+ + MN++Y +
Sbjct: 309 RAELSQLCAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDVFIEYDQVMNILYW----I 364
Query: 73 NTEIRTLP-PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQY 131
T +P PTI KP PLWTGKQ+LS VI PK I R E + L K
Sbjct: 365 PTWDGVIPEPTIIKPKPLWTGKQMLSMVI----PKGINIERKDEKFT-YLSKD------- 412
Query: 132 GLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFT 191
DT + I GE++ G+++KK G+T GL+HAV G + L + K+
Sbjct: 413 -------DTGMLIIDGEIMLGVVNKKTVGATGGGLIHAVMREKGPQVCADLFGNIQKVVN 465
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQ 251
+L GF++G+ D + R+ T I KA+ E A L +P + L+
Sbjct: 466 YWLLHNGFSIGIGDTIADAPTVRQITNTILKAKDKVQEIILRAQNNELPPEPGMT---LR 522
Query: 252 EAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVN 311
E++ Q +Q+ Q + + K T + + NN++ MV +G+KGS +N
Sbjct: 523 ESFE---QNVSQVLNQARDDVGKATADALK-----------DLNNVKQMVSAGSKGSNIN 568
Query: 312 TMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHC 371
Q+S +GQ +EGKR S R+LP F + SP + GFV+ ++ G+ PQEFFFH
Sbjct: 569 ISQMSACVGQQIVEGKRIPFGFSDRSLPHFTKDDYSPESRGFVENSYLRGLTPQEFFFHA 628
Query: 372 MAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTK 431
MAGREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S +++Q +YGEDGLD T+
Sbjct: 629 MAGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGNVLQFIYGEDGLDATQ 688
>gi|325091897|gb|EGC45207.1| DNA-directed RNA polymerase III [Ajellomyces capsulatus H88]
Length = 1456
Score = 240 bits (613), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 207/703 (29%), Positives = 334/703 (47%), Gaps = 90/703 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + PK+G P+ IQD + + LS +D F R + ++ C+
Sbjct: 530 RAEAMELMGVKNNLATPKNGEPIISAIQDFITAAYLLSSKDVFYDRKTFTHI-----CLY 584
Query: 73 NTEIRTL----PPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGS 128
E TL PP++ KP LWTGKQV + V++ + V+I L + + K
Sbjct: 585 MLESDTLFDLPPPSVLKPQILWTGKQVFN-VLMRPNKQSPVLI---NLDAACREFKAPKG 640
Query: 129 TQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLV-HAVWDTHGAEHAISLLSCLA 187
T L D + IR+ E++ G++DK GS + V + + G + A ++ L+
Sbjct: 641 TPRDL--DANDGWLCIRNSEIMCGVMDKSTIGSGKKDSVFYVMLRDFGPDVASEGMNRLS 698
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEII- 246
+L +L +GF++G+ D+ ++ ++ I+ A A C+ E+I
Sbjct: 699 RLSARWLTNLGFSIGITDVYPGEKLLEEKHHIVEHAY-----AQCD----------EVIQ 743
Query: 247 ---SSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVES 303
+ +L++A Q ++ LL KV ++C+ E + + N+ M S
Sbjct: 744 LFKNGKLEKAPGCDEQM--TMENAISGLLSKVRQQAGEICIAE--LSRW--NSPLIMATS 797
Query: 304 GAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQ 363
G+KGS +N Q+ L+GQ + +R RTLP F + P A GFV F +G+
Sbjct: 798 GSKGSDINVAQMVALVGQQIIGNQRVQDGFQDRTLPHFPKHARQPPAKGFVRNSFFSGLT 857
Query: 364 PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYG 423
P EF FH ++GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR+S +++Q YG
Sbjct: 858 PTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTRYDDTVRNSSSNIVQFQYG 917
Query: 424 EDGLDVTKRQYLT-----DKQFSFLE----DNIKWICSYKVILNLLKKHPLSLALLLLLT 474
+D LD + D+ F+ E DN S K LL ++L LL
Sbjct: 918 DDKLDPVDMEGRAKPVHFDRTFTHAEVTTFDN-----SDK---GLLPDEIITLCQNLL-- 967
Query: 475 FKSSGKPNFIFSPHRTKFT-MDLLEQWYQLDDKAR------KKYRKKFKACPQPLISTFQ 527
+P R K DLL + + +D++ + R ++ + + +
Sbjct: 968 -----------APERAKLARFDLLGKKLEYNDRSDHGIDQLESARDFLQSIEDYVCAKAE 1016
Query: 528 PDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIG 587
S ++ V+ K T A + F K + PG VG + AQSIG
Sbjct: 1017 KLRSIDSGTKQRGKGVIHTAKVSTRA--LTSFITACLTKYKRAQVEPGHAVGAVGAQSIG 1074
Query: 588 EPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP--SMEIPFLPDMPKLEKK 645
EP TQMTL TFHFAG M++T G+PR++EI+ A+K I TP + E+ D+ +
Sbjct: 1075 EPGTQMTLKTFHFAGVAGMSITQGVPRIKEII-NASKEISTPVITCELVNKQDLRAAQIV 1133
Query: 646 ANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCFI 688
R+ K+ R D++ ++ ++W E ++N ++ F I
Sbjct: 1134 KGRVEKTFVR----DIIYYIE-EDW--TGNEAYINIKIDFSTI 1169
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 15/142 (10%)
Query: 866 KHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 925
+ + TDGIN + N+I + GIEAA I+ E+ V +
Sbjct: 1276 RDCMTTDGINGHHTR------------TNNIMETRAVLGIEAARTTIVEEIGEVMK--DM 1321
Query: 926 EVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSL 984
+DPRH+ L+AD MT+ G + + R G+ ++ S +Q +FE + + A GR D +
Sbjct: 1322 AIDPRHMQLLADVMTYKGEVLGITRFGLAKMRDSVLQLASFEKTADHLFDAGGAGRTDLI 1381
Query: 985 RAPSARVMLGQECRQGTGLFQL 1006
S +++G+ GTG ++
Sbjct: 1382 EGVSECIIVGKSVSLGTGAMEV 1403
>gi|397135902|gb|AFO11446.1| RNA polymerase I, partial [Millerozyma farinosa]
Length = 872
Score = 240 bits (612), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 154/419 (36%), Positives = 222/419 (52%), Gaps = 39/419 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S + V Q + P+ P+ G++QD + KL+LRDTF+ + MN++Y + +
Sbjct: 311 RAELSEICAVPLQIVSPQSNKPVMGIVQDTLCGVRKLTLRDTFIEYDQVMNMLYW-IPVW 369
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ I PP I KP PLWTGKQ+LS I PK G L D K S +
Sbjct: 370 DGVIP--PPAIVKPKPLWTGKQLLSMAI----PK-------GIHLQRFDDGKNLLSPK-- 414
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
D+ + I GE++ G++DKK GST GL+H V G + L + K+
Sbjct: 415 ------DSGMLIVDGEIMFGVVDKKTVGSTGGGLIHTVMREKGPQVCAQLFGSIQKVVNY 468
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + + T I A+R E +A LD +P + L+E
Sbjct: 469 WLLHNGFSIGIGDTIADASTMKNVTTTIEDAKRKVQEIINDAQQNKLDPEPGMT---LRE 525
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
++ + + +V N + NN++ MV SG+KGS +N
Sbjct: 526 SF--------------EHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINI 571
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EGKR + RTLP F + SP + GFV+ ++ G+ PQEFFFH M
Sbjct: 572 SQMSACVGQQIVEGKRIPFGFADRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAM 631
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTK 431
AGREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S +IQ +YGEDG+D T+
Sbjct: 632 AGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFIYGEDGIDGTQ 690
>gi|225554972|gb|EEH03266.1| DNA-directed RNA polymerase III largest subunit [Ajellomyces
capsulatus G186AR]
Length = 1456
Score = 240 bits (612), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 206/701 (29%), Positives = 333/701 (47%), Gaps = 86/701 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + PK+G P+ IQD + + LS +D F R + ++ L +L
Sbjct: 530 RAEAMELMGVKNNLATPKNGEPIISAIQDFITAAYLLSSKDIFYDRKTFTHI---CLYML 586
Query: 73 NTEIR--TLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
++ R PP++ KP LWTGKQV + V++ + V+I L + + K T
Sbjct: 587 ESDTRFDLPPPSVLKPQILWTGKQVFN-VLMRPNKQSPVLI---NLDAACREFKAPKGTP 642
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLV-HAVWDTHGAEHAISLLSCLAKL 189
L D + IR+ E++ G++DK GS + V + + G + A ++ L++L
Sbjct: 643 RDL--DANDGWLCIRNSEIMCGVMDKSTIGSGKKDSVFYVMLRDFGPDVASEGMNRLSRL 700
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEII--- 246
+L +GF++G+ D+ ++ ++ I+ A A C+ E+I
Sbjct: 701 SARWLTNLGFSIGITDVYPGEKLLEEKHHIVEHAY-----AQCD----------EVIQLF 745
Query: 247 -SSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGA 305
+ +L++A Q ++ LL KV ++C+ E N+ M SG+
Sbjct: 746 KNGKLEKAPGCDEQM--TMENAISGLLSKVRQQAGEICIAE----LSRWNSPLIMATSGS 799
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS +N Q+ L+GQ + +R RTLP F + P A GFV F +G+ P
Sbjct: 800 KGSDINVAQMVALVGQQIIGNQRVQDGFQDRTLPHFPKHARQPPAKGFVRNSFFSGLTPT 859
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EF FH ++GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR+S +++Q YG+D
Sbjct: 860 EFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTRYDDTVRNSSSNIVQFQYGDD 919
Query: 426 GLDVTKRQYLT-----DKQFSFLE----DNIKWICSYKVILNLLKKHPLSLALLLLLTFK 476
LD + D+ F+ E DN S K LL ++L LL
Sbjct: 920 KLDPVDMEGRAKPVHFDRTFTHAEVTTFDN-----SDK---GLLPDEIITLCQNLL---- 967
Query: 477 SSGKPNFIFSPHRTKFT-MDLLEQWYQLDDKAR------KKYRKKFKACPQPLISTFQPD 529
+P R K DLL + + +D++ + R ++ + + +
Sbjct: 968 ---------APERAKLARFDLLGKKLEYNDRSDHGIDQLESARDFLQSIEDYVCAKAEKL 1018
Query: 530 AHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEP 589
S ++ V+ K T A + F K + PG VG + AQSIGEP
Sbjct: 1019 RSIDSGTKQRGKGVIHTAKVSTRA--LTSFITACLTKYKRAQVEPGHAVGAVGAQSIGEP 1076
Query: 590 STQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP--SMEIPFLPDMPKLEKKAN 647
TQMTL TFHFAG M++T G+PR++EI+ A+K I TP + E+ D+ +
Sbjct: 1077 GTQMTLKTFHFAGVAGMSITQGVPRIKEII-NASKEISTPVITCELVNKQDLRAAQIVKG 1135
Query: 648 RLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCFI 688
R+ K+ R D++ ++ ++W E ++N ++ F I
Sbjct: 1136 RVEKTFVR----DIIYYIE-EDW--TGNEAYINIKIDFSTI 1169
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 15/142 (10%)
Query: 866 KHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 925
+ + TDGIN RH N+I + GIEAA I+ E+ V +
Sbjct: 1276 RDCMTTDGIN------GRHT------RTNNIMETRAVLGIEAARTTIVDEIGEVMK--DM 1321
Query: 926 EVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSL 984
+DPRH+ L+AD MT+ G + + R G+ ++ S +Q +FE + + A GR D +
Sbjct: 1322 AIDPRHMQLLADVMTYKGEVLGITRFGLAKMRDSVLQLASFEKTADHLFDAGGAGRTDLI 1381
Query: 985 RAPSARVMLGQECRQGTGLFQL 1006
S +++G+ GTG ++
Sbjct: 1382 EGVSECIIVGKSVSLGTGAMEV 1403
>gi|392596906|gb|EIW86228.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Coniophora puteana RWD-64-598 SS2]
Length = 1746
Score = 239 bits (611), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 149/416 (35%), Positives = 228/416 (54%), Gaps = 39/416 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S + V Q + P+ P+ G++QD + K +LRDTF+ + N++ L +
Sbjct: 507 RAELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKFTLRDTFMEWNQVQNIL---LWVP 563
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + PP I+KP PLWTGKQ+LS VI P+ I R E S
Sbjct: 564 DWDGNVPPPAIFKPKPLWTGKQILSMVI----PRGINIQRAAEPKSS------------- 606
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ V+D + I +GE++ GI++KK G++Q GL+H V+ G E L + + +
Sbjct: 607 --NPVFDDGILIENGEIIYGIVEKKTVGASQGGLIHVVFREKGPEATRDLFTGIQVVVNY 664
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + + T +I ++L +E +A L P + ++E
Sbjct: 665 WLFHNGFSIGIGDTVAGPKVMTHITNVIQGKKKLVSEIVEDAYHDRLKALPGMT---IRE 721
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
+ F ++++R+ D+ + Q L + NN++ MV +G+KGS +N
Sbjct: 722 S------FESKVERELNRARDE-SGQYAQKNLSDD-------NNVKQMVVAGSKGSYINI 767
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EGKR RTLP F + SP + GFV+ ++ G+ PQEFFFH M
Sbjct: 768 SQMSVCVGQQSVEGKRIPFGFRHRTLPHFTKDDFSPESRGFVENSYLRGLTPQEFFFHAM 827
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
AGREGLIDTAVKT+ +GY+QR LVK LE + VHYD TVR+S L+Q +YGEDG+D
Sbjct: 828 AGREGLIDTAVKTAETGYIQRRLVKALEDVMVHYDGTVRNSLGDLLQFVYGEDGMD 883
Score = 93.2 bits (230), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 66/106 (62%), Gaps = 3/106 (2%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
SL +PGE G LAAQSIGEP+TQMTLNTFH+AG NVTLG+PRL+EI+ A IKTP
Sbjct: 1067 SLVHPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINTAVN-IKTP 1125
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISP 675
S+ + P + + A + + + ++ V V+I W + P
Sbjct: 1126 SLTVYLDPQISRNPDSAKNVQQELAYTSLRTVTAAVEI--WYDPDP 1169
Score = 79.7 bits (195), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 76/140 (54%), Gaps = 2/140 (1%)
Query: 868 LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 927
+L+TDG+N+ + + D + Y N+ + G+EAA I++E++NV G V
Sbjct: 1318 VLETDGVNLKTVMTISGV-DFRRTYSNNCTEVFDVLGVEAARAAIMKELRNVIEFDGSYV 1376
Query: 928 DPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRA 986
+ RHLSL+ D MT G +A+ R+GI R + + + +FE +E + +A+ G +D
Sbjct: 1377 NYRHLSLLCDLMTQRGHLMAITRHGINRADTGALMRCSFEETVEILMEAAAVGEKDDCHG 1436
Query: 987 PSARVMLGQECRQGTGLFQL 1006
+ V+ GQ GTG F +
Sbjct: 1437 VAENVLFGQMAPMGTGAFDV 1456
>gi|83320478|gb|ABC02866.1| RNA polymerase II largest subunit, partial [Neocallimastix sp.
GE13]
Length = 813
Score = 239 bits (611), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 151/422 (35%), Positives = 225/422 (53%), Gaps = 35/422 (8%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S+ KAE + V Q + P+ P+ G++QD + K + RD FLTR MN++
Sbjct: 227 SYETKAEVQEICMVPKQIVSPQANKPVMGIVQDTLCGIRKFTKRDCFLTRDFVMNII--- 283
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGS 128
+ + + + PP I KP+PLWTGKQ++S +I PK ++ H S D +
Sbjct: 284 MWVPDWDGVVPPPCILKPIPLWTGKQIMSLII----PKINIVGYH----STHPDNEDTDI 335
Query: 129 TQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAK 188
+ DT V I +GELL+GIL KK GS+Q G++H V + +G E A +
Sbjct: 336 SP-------GDTKVLIENGELLAGILCKKTVGSSQNGIIHVVMNEYGPETAKLFFNGTQT 388
Query: 189 LFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISS 248
+ +L + GF++G+ D + + K I A++ E A L+ P +
Sbjct: 389 VVNYWLLQNGFSIGIGDTIADRNTMETINKAIASAKQAVNEVILQAQQCKLECQPGLT-- 446
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGS 308
++E + S+ ++R D + Q L E NN++ MV SG+KGS
Sbjct: 447 -IRETFESL------VNRHLNKARDSAGASA-QKSLRE-------YNNVKQMVVSGSKGS 491
Query: 309 TVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFF 368
+N Q++ +GQ +EGKR RTLP F + SP + GFV+ ++ G+ PQEFF
Sbjct: 492 FINISQMTACVGQQNVEGKRIPFGFKYRTLPHFTKDDQSPESRGFVENSYLRGLTPQEFF 551
Query: 369 FHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
FH M GREGLIDTAVKT+ +GY+QR L+K LE +++ YD TVR+S +IQ YGEDG+D
Sbjct: 552 FHAMGGREGLIDTAVKTAETGYIQRRLIKSLEDVSIKYDGTVRNSFGHIIQFCYGEDGMD 611
Query: 429 VT 430
T
Sbjct: 612 GT 613
>gi|188532141|gb|ACD63082.1| RNA polymerase II largest subunit [Beta vulgaris]
Length = 1012
Score = 239 bits (611), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 157/457 (34%), Positives = 230/457 (50%), Gaps = 57/457 (12%)
Query: 14 AEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCILN 73
AE LM V + P+ P+ G++QD ++ K++ RDTF+ + +MN++ + +
Sbjct: 433 AEVXELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL---MWWED 489
Query: 74 TEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR----HGELLSGILDKKQFGST 129
+ + PTI KP PLWTGKQV + +I PK +IR H E +G +
Sbjct: 490 FDGKIPAPTILKPRPLWTGKQVFNLII----PKQINLIRTSAWHSEAETGFITPG----- 540
Query: 130 QYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKL 189
DT V I GELL+G L KK G++ L+H +W+ G + A L L
Sbjct: 541 ---------DTQVRIERGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWL 591
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
+L + GF++G+ D + K + I+KA+ E A L+ +P
Sbjct: 592 VNYWLLQNGFSIGIGDTIADASTMEKINETISKAKNEVKELIKAAQEKQLEAEP------ 645
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
+ F ++++ D ++ Q L E +NNL+ MV +G+KGS
Sbjct: 646 ---GRTMMESFENRVNQVLNKARDDAGSSA-QKSLSE-------SNNLKAMVTAGSKGSF 694
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q++ +GQ +EGKR RTLP F + P + GFV+ ++ G+ PQEFFF
Sbjct: 695 INISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 754
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H M GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +IQ LYGEDG+D
Sbjct: 755 HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDA 814
Query: 430 T-------------KRQYLTDKQFSFLEDNIKWICSY 453
KR++ D F + DN W SY
Sbjct: 815 VWIESQKLDSLKMKKREF--DNVFRYEFDNANWNPSY 849
>gi|120561229|gb|ABM27000.1| RNA polymerase II largest subunit, partial [Blastocladiella
emersonii]
Length = 1005
Score = 239 bits (611), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 152/419 (36%), Positives = 222/419 (52%), Gaps = 35/419 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V Q + P+ P+ G++QD + K + RDTF+ +A MNL+ + +
Sbjct: 419 RAEIQQLCMVPLQIVSPQSNKPVMGIVQDTLCGITKFTRRDTFMDKAMVMNLL---MWVP 475
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ P I KP PLWTGKQ+LS +I PK I H G G
Sbjct: 476 GWDGNVPVPAILKPKPLWTGKQILSLII----PKVNCITLHSTHPDGETTDISPG----- 526
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
DT V + GELL+GI+ KK G++ GLVH W HG E A +LL+ +
Sbjct: 527 ------DTRVIVEDGELLAGIVCKKTVGTSAGGLVHVSWMEHGPEAAKALLNGCQTIVNH 580
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + + ++ ++I +AR A NA+ D + +++
Sbjct: 581 WLLHNGFSIGIGDTIADDDTMQRINELIGEAR-----AGVNAVIEAAQKD----TLKVET 631
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
F AQ++R LL+ N + NN++ MV +G+KGS +N
Sbjct: 632 GLTLRETFEAQVNR----LLNGAVNAAGGAAAKSFKVH----NNVKHMVVAGSKGSNINI 683
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EGKR R+LP F+ + SP + GFV+ ++ G+ PQEFFFH M
Sbjct: 684 SQMSACVGQQNVEGKRIPFGFQYRSLPHFVKDDYSPESRGFVENSYLRGLNPQEFFFHAM 743
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTK 431
GREGLIDTAVKT+ +GY+QR LVK LE + V YD TVR++ ++IQ YGEDG+D T+
Sbjct: 744 GGREGLIDTAVKTAETGYIQRRLVKALEDIMVKYDGTVRNAQGNIIQFAYGEDGMDGTR 802
>gi|397135874|gb|AFO11432.1| RNA polymerase I, partial [Hyphopichia burtonii]
Length = 872
Score = 239 bits (611), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 151/419 (36%), Positives = 222/419 (52%), Gaps = 39/419 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S + V Q + + P+ G++QD + K++LRD+F+ + MN++Y I
Sbjct: 311 RAELSQICAVPLQIVSAQSNKPVMGIVQDTLCGIRKMTLRDSFIEYDQVMNMLY---WIP 367
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N + PP I KP PLW+GKQ+LS I PK G L D K S +
Sbjct: 368 NWDGVIPPPAIVKPKPLWSGKQLLSMAI----PK-------GIHLQRFDDGKNLLSPK-- 414
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
D + I GE++ G++DKK G+T GL+H V G++ L S + K+
Sbjct: 415 ------DNGMLIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGSQVCAQLFSAIQKVVNF 468
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + E R T I +A+ E +A LD +P + L+E
Sbjct: 469 WLLHNGFSIGIGDTIADSETMRTVTTTIQEAKDKVQEIILDAQSNKLDPEPGMT---LRE 525
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
++ + + +V N + NN++ MV SG+KGS +N
Sbjct: 526 SF--------------EHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVTSGSKGSFINI 571
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EGKR + R+LP F + SP + GFV+ ++ G+ PQEFFFH M
Sbjct: 572 SQMSACVGQQIVEGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAM 631
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTK 431
AGREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S +IQ +YGEDG+D T+
Sbjct: 632 AGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFVYGEDGIDGTQ 690
>gi|188532143|gb|ACD63083.1| RNA polymerase II largest subunit [Ceratophyllum demersum]
Length = 1010
Score = 239 bits (611), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 157/458 (34%), Positives = 231/458 (50%), Gaps = 57/458 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ G++QD ++ K++ RDTF+ + +MN++ +
Sbjct: 430 RAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL---MWWE 486
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR----HGELLSGILDKKQFGS 128
+ + + PTI KP PLWTGKQV + +I PK +IR H E +G +
Sbjct: 487 DFDGKIPAPTILKPRPLWTGKQVFNLII----PKQINLIRTSAWHSEAETGFITPG---- 538
Query: 129 TQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAK 188
DT V I GELL+G L KK G++ L+H +W+ G + A L
Sbjct: 539 ----------DTQVRIERGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQW 588
Query: 189 LFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISS 248
L +L + GF++G+ D + K + I+KA+ E A L+ +P
Sbjct: 589 LVNYWLLQNGFSIGIGDTIADASTMEKINETISKAKNEVKELIKAAQEKQLEAEP----- 643
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGS 308
+ F ++++ D ++ Q L E +NNL+ MV +G+KGS
Sbjct: 644 ----GRTMMESFENRVNQVLNKARDDAGSSA-QKSLSE-------SNNLKAMVTAGSKGS 691
Query: 309 TVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFF 368
+N Q++ +GQ +EGKR RTLP F + P + GFV+ ++ G+ PQEFF
Sbjct: 692 FINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFF 751
Query: 369 FHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
FH M GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +IQ LYGEDG+D
Sbjct: 752 FHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 811
Query: 429 VT-------------KRQYLTDKQFSFLEDNIKWICSY 453
KR++ D F + DN W SY
Sbjct: 812 AVWIESQKLDSLKMKKREF--DNVFRYEFDNANWNPSY 847
>gi|33326213|gb|AAQ08516.1| RNA polymerase II largest subunit [Magnolia x soulangeana]
Length = 1010
Score = 239 bits (611), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 157/458 (34%), Positives = 231/458 (50%), Gaps = 57/458 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ G++QD ++ K++ RDTF+ + +MN++ +
Sbjct: 430 RAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL---MWWE 486
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR----HGELLSGILDKKQFGS 128
+ + + PTI KP PLWTGKQV + +I PK +IR H E +G +
Sbjct: 487 DFDGKIPAPTILKPRPLWTGKQVFNLII----PKQINLIRTSAWHSEAETGFITPG---- 538
Query: 129 TQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAK 188
DT V I GELL+G L KK G++ L+H +W+ G + A L
Sbjct: 539 ----------DTQVRIERGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQW 588
Query: 189 LFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISS 248
L +L + GF++G+ D + K + I+KA+ E A L+ +P
Sbjct: 589 LVNYWLLQNGFSIGIGDTIADASTMEKINETISKAKNEVKELIKAAQEKQLEAEP----- 643
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGS 308
+ F ++++ D ++ Q L E +NNL+ MV +G+KGS
Sbjct: 644 ----GRTMMESFENRVNQVLNKARDDAGSSA-QKSLSE-------SNNLKAMVTAGSKGS 691
Query: 309 TVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFF 368
+N Q++ +GQ +EGKR RTLP F + P + GFV+ ++ G+ PQEFF
Sbjct: 692 FINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFF 751
Query: 369 FHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
FH M GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +IQ LYGEDG+D
Sbjct: 752 FHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 811
Query: 429 VT-------------KRQYLTDKQFSFLEDNIKWICSY 453
KR++ D F + DN W SY
Sbjct: 812 AVWIESQKLDSLKMKKREF--DNVFRYEFDNANWNPSY 847
>gi|239614510|gb|EEQ91497.1| DNA-directed RNA polymerase III largest subunit [Ajellomyces
dermatitidis ER-3]
Length = 1456
Score = 239 bits (610), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 206/699 (29%), Positives = 336/699 (48%), Gaps = 82/699 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + PK+G P+ IQD + + LS +D F R + ++ L +L
Sbjct: 530 RAEAMELMGVKNNLATPKNGEPIISAIQDFITAAYMLSSKDVFYDRKAFTHI---CLYML 586
Query: 73 NTEIR--TLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
++ R PP++ KP LWTGKQ+ + V++ + V++ G K G+ +
Sbjct: 587 QSDTRFDLPPPSVIKPQMLWTGKQIFN-VLMRPNKQSPVLVNLDAACRGF--KAPKGTPR 643
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLV-HAVWDTHGAEHAISLLSCLAKL 189
+ W + IR+ E++ G++DK GS + V + + G E A ++ L++L
Sbjct: 644 DLDANDGW---LCIRNSEVMCGVMDKSTIGSGKKDSVFYVMLRDFGPEVAAEGMNRLSRL 700
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEII--- 246
+ +GF++G+ D+ + +++ I+ A A C+ E+I
Sbjct: 701 SARWFTNMGFSIGITDVYPGDKLLEEKSHIVEDAY-----AQCD----------EVIQLF 745
Query: 247 -SSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGA 305
+ +L++A Q ++ +L KV +C+ E + + N+ M SG+
Sbjct: 746 RTGKLEKAPGCDEQM--TMENTISGILSKVRQQAGAICIAE--LSRW--NSPLIMATSGS 799
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS +N Q+ L+GQ + G+R RTLP F + P A GFV F +G+ P
Sbjct: 800 KGSDINVAQMVALVGQQIIGGQRVQDGFQDRTLPHFPKHARQPPAKGFVRNSFFSGLTPT 859
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EF FH ++GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR+S +++Q YG+D
Sbjct: 860 EFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSRYDDTVRNSSSNIVQFQYGDD 919
Query: 426 GLDVT-----KRQYLTDKQFSFLE----DNI-KWICSYKVILNLLKKHPLSLALLLLLTF 475
LD R D+ F+ E DN K + ++I L ++ L+ A L F
Sbjct: 920 KLDPVDMEGRARPVHFDRTFTHCEVTTFDNSDKGLLPDEII--TLCQNLLAPARAKLTRF 977
Query: 476 KSSGKPNFIFSPHRTKFTMDLLEQ----WYQLDDKARKKYRKKFKACPQPLISTFQPDAH 531
GK N ++ R+ +D LE ++D R K ++ +A
Sbjct: 978 DLLGK-NLDYN-DRSDHGIDQLESARDFLQSIEDYVRAKA-ERLRA-------------- 1020
Query: 532 FGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPST 591
+E + K T A + F K + PG VG + AQSIGEP T
Sbjct: 1021 IDGGTERRGRGIDHTAKVSTKA--LTSFITACLTKYKRAQVEPGHAVGAVGAQSIGEPGT 1078
Query: 592 QMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP--SMEIPFLPDMPKLEKKANRL 649
QMTL TFHFAG M++T G+PR++EI+ A+K I TP + E+ D+ + R+
Sbjct: 1079 QMTLKTFHFAGVAGMSITQGVPRIKEII-NASKEISTPVITCELVNKHDLRAAQIVKGRV 1137
Query: 650 AKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCFI 688
K+ R D++ ++ ++W E ++N ++ F I
Sbjct: 1138 EKTFIR----DIIYYIE-EDW--TGNEAYINIKIDFSTI 1169
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 15/142 (10%)
Query: 866 KHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 925
+ + TDGIN + N+I + GIEAA I+ E+ V +
Sbjct: 1276 RDCMTTDGINGHHTR------------TNNIMEARTVLGIEAARTTIVDEISEVMK--DM 1321
Query: 926 EVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSL 984
+DPRH+ L+AD MT+ G + + R G+ ++ S +Q +FE + + A GR D +
Sbjct: 1322 SIDPRHMQLLADVMTYKGEVLGITRFGLAKMRDSVLQLASFEKTADHLFDAGGAGRTDLI 1381
Query: 985 RAPSARVMLGQECRQGTGLFQL 1006
S +++G+ GTG ++
Sbjct: 1382 EGVSECIIVGKSVSLGTGAMEV 1403
>gi|320592285|gb|EFX04724.1| DNA-directed RNA polymerase 3 largest [Grosmannia clavigera kw1407]
Length = 1390
Score = 239 bits (610), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 200/688 (29%), Positives = 315/688 (45%), Gaps = 85/688 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V PK+G P+ QD + + +S +D F TR + + +
Sbjct: 475 RAEALTLMGVKHNLATPKNGEPIIAATQDFITAAYLISSKDRFFTRHTFAYMCAH-MTGS 533
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVL---------STVIINLTPKDKVIIRH-GELLSGILD 122
+ ++ PP I KP LWTGKQV S V++NL K K R GE + +D
Sbjct: 534 SEQLDIPPPAILKPQALWTGKQVFNIMMRPNKSSKVLVNLDAKCKAYKRRPGE--APDMD 591
Query: 123 KKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLV-HAVWDTHGAEHAIS 181
+ D + +R+ E++ G +DK GS + V + + +G + A++
Sbjct: 592 PE--------------DNFLVVRNSEVMCGRMDKSTVGSGKKDSVFYVILRDYGPDEAVT 637
Query: 182 LLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDT 241
++ LA+L ++ G ++GV D+ R++ KI+ + L C+ L +T
Sbjct: 638 AMNRLARLCARFMGNFGLSIGVFDVFPLTTL-REKIKILVREANL----KCDELIHKFNT 692
Query: 242 DPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQF-M 300
+L+++ ++ +L KV + +CL E +N M
Sbjct: 693 ------GKLEKSAGC--NLDQTLENSISGVLSKVRSAAGDLCL-----ETLSKHNAPLTM 739
Query: 301 VESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMT 360
SG+KG +N Q+ ++GQ + G+R R+LP F +P + GFV F +
Sbjct: 740 ATSGSKGLAINVAQMVAVVGQQIIGGQRVPNGFQDRSLPHFPKNVRNPASKGFVQNSFYS 799
Query: 361 GIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQV 420
G+ P EF FH ++GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR S ++Q
Sbjct: 800 GLLPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDNTVRTSSGDVVQF 859
Query: 421 LYGEDGLDV----------------TKRQYLT--DKQFSFLEDNIKWICSYKVILNLLKK 462
+G DGLD T + +T + + S D I +C + K
Sbjct: 860 QFGSDGLDPVDMEGSAVPVNFERSWTHAESITWSNAEPSLDPDTIMAVCDSLLADERAKY 919
Query: 463 HPLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPL 522
L LL + + KF +D + Q+ Q K + + L
Sbjct: 920 IRRHLVTDALLDYNDQSDASLDLQEGARKF-LDDVRQFVQ-------KRADRLTNAKERL 971
Query: 523 ISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLA 582
+ TF DA S + D K ++ A F M K + PG VG +
Sbjct: 972 VETF--DASLAS-HRSYIDKTAKVSEKTLRA-----FVVMCLDKFRKAHVEPGHAVGAVG 1023
Query: 583 AQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKL 642
AQSIGEP TQMTL TFHFAG M++T G+PR++EI+ A+K I TP + P P+
Sbjct: 1024 AQSIGEPGTQMTLKTFHFAGVAGMSITEGVPRIKEII-NASKKINTPIITCPL--QNPRQ 1080
Query: 643 EKKANRLAKSMTRITMADVLEKVKIKEW 670
+ A+ + + + ++DVL V+ +EW
Sbjct: 1081 IEAAHIVKGRIEKTYISDVLSYVE-EEW 1107
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 64/120 (53%), Gaps = 3/120 (2%)
Query: 891 LYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNR 950
+ N I GIEAA + I E+KNV + + +DPRH+ L+AD MT+ G + + R
Sbjct: 1248 VVTNSIMECLDILGIEAARKSIAVEIKNV--MRDMNIDPRHMELLADVMTYKGQVLGITR 1305
Query: 951 NGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNR 1009
G+ ++ S +Q +FE + + A +ED ++ S V++GQ GTG F + R
Sbjct: 1306 FGLAKMRDSVLQLASFEKTPDHLFDAVAGLKEDPIQGVSESVIMGQSMSVGTGGFGMIRR 1365
>gi|448082723|ref|XP_004195204.1| Piso0_005751 [Millerozyma farinosa CBS 7064]
gi|359376626|emb|CCE87208.1| Piso0_005751 [Millerozyma farinosa CBS 7064]
Length = 1758
Score = 239 bits (610), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 153/419 (36%), Positives = 222/419 (52%), Gaps = 39/419 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S + V Q + P+ P+ G++QD + K++LRDTF+ + MN++Y + +
Sbjct: 503 RAELSEICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDTFIEYDQVMNMLYW-IPVW 561
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ I PP I KP PLWTGKQ+LS I PK G L D K S +
Sbjct: 562 DGVIP--PPAIVKPKPLWTGKQLLSMAI----PK-------GIHLQRFDDGKNLLSPK-- 606
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
D+ + I GE++ G++DKK GST GL+H V G + L + K+
Sbjct: 607 ------DSGMLIVDGEIMFGVVDKKTVGSTGGGLIHTVMREKGPQVCAQLFGSIQKVVNY 660
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + + T I A+R E +A LD +P + L+E
Sbjct: 661 WLLHNGFSIGIGDTIADASTMKNVTTTIEDAKRKVQEIINDAQQNKLDPEPGMT---LRE 717
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
++ + + +V N + NN++ MV SG+KGS +N
Sbjct: 718 SF--------------EHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINI 763
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EGKR + RTLP F + SP + GFV+ ++ G+ PQEFFFH M
Sbjct: 764 SQMSACVGQQIVEGKRIPFGFADRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAM 823
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTK 431
AGREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S +IQ +YGEDG+D T+
Sbjct: 824 AGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFIYGEDGIDGTQ 882
Score = 93.2 bits (230), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 68/98 (69%), Gaps = 1/98 (1%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
S+ +PGE VGV+AAQSIGEP+TQMTLNTFH+AG NVTLG+PRL+EIL +A K IKTP
Sbjct: 1062 SIVHPGEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVA-KNIKTP 1120
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKI 667
++ + ++ +KA + ++ T+ +V +I
Sbjct: 1121 ALTVYLQKEIAADIEKAKVVQSAIEHTTLKNVTSATEI 1158
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 75/140 (53%), Gaps = 2/140 (1%)
Query: 868 LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 927
+L+TDG+N+ + + D + Y N+ + S GIEA + +E+ NV A G V
Sbjct: 1312 VLETDGVNLADVMAVPGV-DATRTYSNNFIEILSVLGIEATRTALFKEILNVIAFDGSYV 1370
Query: 928 DPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRA 986
+ RH++L+ D MT G +A+ R+GI R + + + +FE +E + +A+ D R
Sbjct: 1371 NYRHMALLVDVMTSRGHLMAITRHGINRSDTGALMRCSFEETVEILLEAASSAELDDCRG 1430
Query: 987 PSARVMLGQECRQGTGLFQL 1006
S VMLGQ GTG F +
Sbjct: 1431 ISENVMLGQMAPLGTGAFDV 1450
>gi|327294643|ref|XP_003232017.1| DNA-directed RNA polymerase III largest subunit [Trichophyton rubrum
CBS 118892]
gi|326465962|gb|EGD91415.1| DNA-directed RNA polymerase III largest subunit [Trichophyton rubrum
CBS 118892]
Length = 1444
Score = 239 bits (610), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 191/634 (30%), Positives = 290/634 (45%), Gaps = 66/634 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V S PK+G P+ IQD + + LS +D F R + + L +L
Sbjct: 530 RAEAMELMGVKSNLATPKNGEPIIAAIQDFITAAYLLSSKDNFFDRKTFTQI---CLSML 586
Query: 73 NTEIR--TLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
++ R PP KP LWTGKQV S + + P ++ L + K
Sbjct: 587 DSSTRFELPPPATIKPQMLWTGKQVFSVL---MRPNKDCPVKV-NLDAACRQLKLVKGQP 642
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQY-GLVHAVWDTHGAEHAISLLSCLAKL 189
L D + IR+ E+L G+ DK G+ + + + G A ++ L+KL
Sbjct: 643 RDLCEN--DGWLCIRNSEMLCGVADKSTIGAGKKDNIFFVIQRDFGYAAAAEAMNRLSKL 700
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
+L GF++G+ D+ + R + +IN A + C+ L I ++
Sbjct: 701 SARWLTNKGFSIGITDVYPGESLVRLKDTLINTAFQ-----QCDDL---------ITAAS 746
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
++ R + + +L+KV + C+ E P M G+KGS
Sbjct: 747 KEKPQMGKSDSRQTAENEITGILNKVRQQAGEYCISELSKHNAPL----IMATCGSKGSN 802
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ ++GQ +E R + RTLP F + A GFV F +G+ P EF F
Sbjct: 803 INVSQMVAVVGQQSIENARVSKGFQDRTLPHFARHSQHALAKGFVRNSFFSGLTPTEFLF 862
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD- 428
H M+GREGLIDTAVKT+ +GY+ R L+K LE L+ YD TVRDS +IQ YG+D LD
Sbjct: 863 HAMSGREGLIDTAVKTAETGYMSRRLMKSLEDLSTRYDNTVRDSSSFIIQFQYGDDQLDP 922
Query: 429 ----VTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFI 484
+ + D+ F+ E +Y + LS +L L + +
Sbjct: 923 VNMEASAKPVHFDRTFTHAEST-----TYDK-----DEKGLSADEILALCEE-------L 965
Query: 485 FSPHRTKFT-MDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSV 543
+P R K DLL L KA+ + + +S+ + + + + L S
Sbjct: 966 IAPERKKLVRYDLLGN--TLSYKAKNDFATDQWESNRDFLSSIE--EYVAAKATQLRPSD 1021
Query: 544 VKYTKGRTDASHVDK--------FYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTL 595
+ K + +H K F K + + PG ++G + AQSIGEP TQMTL
Sbjct: 1022 NEEGKEQMAFTHTSKISARTLKAFITSCLDKYMRAHVEPGHSIGAIGAQSIGEPGTQMTL 1081
Query: 596 NTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
TFHFAG M++T G+PR++EI+ A+K I TP
Sbjct: 1082 KTFHFAGVAGMSITQGVPRIKEII-NASKEISTP 1114
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 64/115 (55%), Gaps = 3/115 (2%)
Query: 893 VNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNG 952
N + M GIEAA II E+ +V + G+ +DPRH+ L+AD MT+ G + + R G
Sbjct: 1290 TNHVMEMRDVLGIEAARTTIIDEISSVMS--GMAIDPRHMQLLADVMTYKGEVLGITRFG 1347
Query: 953 I-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+ ++ S +Q +FE + + A GR D+++ S +++G+ GTG ++
Sbjct: 1348 LAKIRDSVLQLASFEKTADHLFDAGGAGRRDTVQGVSECIIMGKTISLGTGSMEV 1402
>gi|154270754|ref|XP_001536231.1| DNA-directed RNA polymerase III largest subunit [Ajellomyces
capsulatus NAm1]
gi|150409805|gb|EDN05245.1| DNA-directed RNA polymerase III largest subunit [Ajellomyces
capsulatus NAm1]
Length = 1439
Score = 239 bits (610), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 208/696 (29%), Positives = 327/696 (46%), Gaps = 93/696 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V PK+G P+ IQD + + LS +D F R + ++ L +L
Sbjct: 530 RAEAMELMGVKHNLATPKNGEPIISAIQDFITAAYLLSSKDVFYDRKTFTHI---CLYML 586
Query: 73 NTEIR--TLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
++ R PP++ KP LWTGKQV + V++ + V+I L + + K T
Sbjct: 587 ESDTRFDLPPPSVLKPQILWTGKQVFN-VLMRPNKQSPVLI---NLDAACREFKAPKGTP 642
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLV-HAVWDTHGAEHAISLLSCLAKL 189
L D + IR+ E++ G++DK GS + V + + G + A ++ L++L
Sbjct: 643 RDL--DANDGWLCIRNSEIMCGVMDKSTIGSGKKDSVFYVMLRDFGPDVASEGMNRLSRL 700
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEII--- 246
+L +GF++G+ D+ ++ ++ I+ A A C+ E+I
Sbjct: 701 SARWLTNLGFSIGITDVYPGEKLLEEKHHIVEHAY-----AQCD----------EVIQLF 745
Query: 247 -SSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGA 305
+ +L++A Q ++ LL KV ++C+ E N+ M SG+
Sbjct: 746 KNGKLEKAPGCDEQM--TMENAISGLLSKVRQQAGEICIAE----LSRWNSPLIMATSGS 799
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS +N Q+ L+GQ + +R RTLP F Y P A GFV F +G+ P
Sbjct: 800 KGSDINVAQMVALVGQQIIGNQRVQDGFQDRTLPHFPKYARQPPAKGFVRNSFFSGLTPT 859
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EF FH ++GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR+S +++Q YG+D
Sbjct: 860 EFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTRYDDTVRNSSSNIVQFQYGDD 919
Query: 426 GLDVTKRQYLT-----DKQFSFLE----DNIKWICSYKVILNLLKKHPLSLALLLLLTFK 476
LD + D+ F+ E DN S K LL ++L LL
Sbjct: 920 KLDPVDMEGRAKPVHFDRTFTHAEVTTFDN-----SDK---GLLPDEIITLCQNLL---- 967
Query: 477 SSGKPNFIFSPHRTKFT-MDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHF-GS 534
+P R K DL + + +D++ I + F S
Sbjct: 968 ---------APERAKLARFDLSGKKLEYNDRSDHG------------IDQLESARDFLQS 1006
Query: 535 ISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMT 594
I + V+ K T A + F K + PG VG + AQSIGEP TQMT
Sbjct: 1007 IEDYRGKGVIHTAKVSTRA--LTSFITACLTKYKRAQVEPGHAVGAVGAQSIGEPGTQMT 1064
Query: 595 LNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP--SMEIPFLPDMPKLEKKANRLAKS 652
L TFHFAG M++T G+PR++EI+ A+K I TP + E+ D+ + R+ K+
Sbjct: 1065 LKTFHFAGVAGMSITQGVPRIKEII-NASKEISTPVITCELVNKQDLRAAQIVKGRVEKT 1123
Query: 653 MTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCFI 688
R D++ ++ ++W E ++N ++ F I
Sbjct: 1124 FVR----DIIYYIE-EDW--TGNEAYINIKIDFSTI 1152
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 15/142 (10%)
Query: 866 KHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 925
+ + TDGIN RH N+I + GIEAA I+ E+ V +
Sbjct: 1259 RDCMTTDGIN------GRHT------RTNNIMETRAVLGIEAARTTIVDEIGEVMK--DM 1304
Query: 926 EVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSL 984
+DPRH+ L+AD MT+ G + + R G+ ++ S +Q +FE + + A GR D +
Sbjct: 1305 AIDPRHMQLLADVMTYKGEVLGITRFGLAKMRDSVLQLASFEKTADHLFDAGGAGRTDLI 1364
Query: 985 RAPSARVMLGQECRQGTGLFQL 1006
S +++G+ GTG ++
Sbjct: 1365 EGVSECIIVGKSVSLGTGAMEV 1386
>gi|120561241|gb|ABM27005.1| RNA polymerase II largest subunit, partial [Neocallimastix
frontalis]
Length = 1004
Score = 239 bits (610), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 151/422 (35%), Positives = 225/422 (53%), Gaps = 35/422 (8%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S+ KAE + V Q + P+ P+ G++QD + K + RD FLTR MN++
Sbjct: 413 SYETKAEVQEICMVPKQIVSPQANKPVMGIVQDTLCGIRKFTKRDCFLTRDFVMNII--- 469
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGS 128
+ + + + PP I KP+PLWTGKQ++S +I PK ++ H S D +
Sbjct: 470 MWVPDWDGVVPPPCILKPIPLWTGKQIMSLII----PKINIVGYH----STHPDNEDTDI 521
Query: 129 TQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAK 188
+ DT V I +GELL+GIL KK GS+Q G++H V + +G E A +
Sbjct: 522 SP-------GDTKVLIENGELLAGILCKKTVGSSQNGIIHVVMNEYGPETAKLFFNGTQT 574
Query: 189 LFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISS 248
+ +L + GF++G+ D + + K I A++ E A L+ P +
Sbjct: 575 VVNYWLLQNGFSIGIGDTIADRNTMETINKAIASAKQAVNEVILQAQQCKLECQPGLT-- 632
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGS 308
++E + S+ ++R D + Q L E NN++ MV SG+KGS
Sbjct: 633 -IRETFESL------VNRHLNKARDSAGASA-QKSLRE-------YNNVKQMVVSGSKGS 677
Query: 309 TVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFF 368
+N Q++ +GQ +EGKR RTLP F + SP + GFV+ ++ G+ PQEFF
Sbjct: 678 FINISQMTACVGQQNVEGKRIPFGFKYRTLPHFTKDDQSPESRGFVENSYLRGLTPQEFF 737
Query: 369 FHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
FH M GREGLIDTAVKT+ +GY+QR L+K LE +++ YD TVR+S +IQ YGEDG+D
Sbjct: 738 FHAMGGREGLIDTAVKTAETGYIQRRLIKSLEDVSIKYDGTVRNSFGHIIQFCYGEDGMD 797
Query: 429 VT 430
T
Sbjct: 798 GT 799
>gi|397135872|gb|AFO11431.1| RNA polymerase I, partial [Metschnikowia bicuspidata]
Length = 872
Score = 239 bits (609), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 147/418 (35%), Positives = 223/418 (53%), Gaps = 39/418 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S + V Q + P+ P+ G++QD + K++LRD+F+ + MN++Y I
Sbjct: 311 RAEMSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDSFIEYEQVMNMLY---WIP 367
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N + PP ++KP PLW+GKQ+LS I PK G L D + S +
Sbjct: 368 NWDGVIPPPAVFKPKPLWSGKQLLSMAI----PK-------GIHLQRFDDGRDMLSPK-- 414
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
D + + GE++ G++DKK G+T GL+H V G + L S + K+
Sbjct: 415 ------DLGMLVVDGEIIFGVVDKKTVGATGGGLIHTVMREKGPQVCAQLFSSIQKVVNY 468
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + ++ R T I +A++ E +A L+ +P + L+E
Sbjct: 469 WLLHNGFSIGIGDTIADKDTMRDVTTTIQEAKQKVQEIIMDAQQNKLEPEPGMT---LRE 525
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
++ + + ++ N + NN++ MV SG+KGS +N
Sbjct: 526 SF--------------EHNVSRILNQARDTAGRSAEMNLKDLNNVKQMVTSGSKGSFINI 571
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EGKR RTLP F + SP + GFV+ ++ G+ PQEFFFH M
Sbjct: 572 SQMSACVGQQIVEGKRIPFGFGDRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAM 631
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVT 430
AGREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S +IQ +YGEDG+D T
Sbjct: 632 AGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFVYGEDGIDAT 689
>gi|326469885|gb|EGD93894.1| DNA-directed RNA polymerase III largest subunit [Trichophyton
tonsurans CBS 112818]
Length = 1444
Score = 239 bits (609), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 189/638 (29%), Positives = 288/638 (45%), Gaps = 74/638 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V S PK+G P+ IQD + + LS +D F R + + L +L
Sbjct: 530 RAEAMELMGVKSNLATPKNGEPIIAAIQDFITAAYLLSSKDNFFDRKTFTQI---CLSML 586
Query: 73 NTEIR--TLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
++ R PP KP LWTGKQV S + + P ++ L + K
Sbjct: 587 DSSTRFELPPPATIKPQMLWTGKQVFSVL---MRPNKDCPVKV-NLDAACRQLKLVKGQP 642
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQY-GLVHAVWDTHGAEHAISLLSCLAKL 189
L D + IR+ E+L G+ DK G+ + + + G A ++ L+KL
Sbjct: 643 RDLCEN--DGWLCIRNSEMLCGVADKSTIGAGKKDNIFFVIQRDFGYAAAAEAMNRLSKL 700
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
+L GF++G+ D+ + R + +IN A + C+ L I ++
Sbjct: 701 SARWLTNKGFSIGITDVYPGESLVRLKDTLINTAFQ-----QCDDL---------ITAAS 746
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
++ R + + +L+KV + C+ E P M G+KGS
Sbjct: 747 KEKPQMGKSDSRQTAENEITGILNKVRQQAGEYCISELSKHNAPL----IMATCGSKGSN 802
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ ++GQ +E R + RTLP F + A GFV F +G+ P EF F
Sbjct: 803 INVSQMVAVVGQQSIENARVSKGFQDRTLPHFARHSQHALAKGFVRNSFFSGLTPTEFLF 862
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD- 428
H M+GREGLIDTAVKT+ +GY+ R L+K LE L+ YD TVRDS +IQ YG+D LD
Sbjct: 863 HAMSGREGLIDTAVKTAETGYMSRRLMKSLEDLSTRYDNTVRDSSSFIIQFQYGDDQLDP 922
Query: 429 ----VTKRQYLTDKQFSFLE-------------DNIKWICSYKVILNLLKKHPLSLALLL 471
+ + D+ F+ E D I +C ++I KK L
Sbjct: 923 VNMEASAKPVHFDRTFTHAESTTYDKDEKGLSADEILALCE-ELIAPERKKLVRYDLLGN 981
Query: 472 LLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAH 531
L++K+ T F D QW ++ + + + + +P
Sbjct: 982 TLSYKAE-----------TDFATD---QW-----ESNRDFLSSIEEYVAAKAAQLRP--- 1019
Query: 532 FGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPST 591
S +E + + + A + F K + + PG ++G + AQSIGEP T
Sbjct: 1020 --SDNEEGKEQMAFTHTSKISARTLKAFITSCLDKYMRAHVEPGHSIGAIGAQSIGEPGT 1077
Query: 592 QMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
QMTL TFHFAG M++T G+PR++EI+ A+K I TP
Sbjct: 1078 QMTLKTFHFAGVAGMSITQGVPRIKEII-NASKEISTP 1114
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 64/115 (55%), Gaps = 3/115 (2%)
Query: 893 VNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNG 952
N + M GIEAA II E+ +V + G+ +DPRH+ L+AD MT+ G + + R G
Sbjct: 1290 TNHVMEMRDVLGIEAARTTIIDEISSVMS--GMAIDPRHMQLLADVMTYKGEVLGITRFG 1347
Query: 953 I-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+ ++ S +Q +FE + + A GR D+++ S +++G+ GTG ++
Sbjct: 1348 LAKIRDSVLQLASFEKTADHLFDAGGAGRRDTVQGVSECIIMGKTISLGTGSMEV 1402
>gi|221057169|ref|XP_002259722.1| RNA polymerase I [Plasmodium knowlesi strain H]
gi|193809794|emb|CAQ40498.1| RNA polymerase I, putative [Plasmodium knowlesi strain H]
Length = 2592
Score = 238 bits (608), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 142/387 (36%), Positives = 209/387 (54%), Gaps = 51/387 (13%)
Query: 260 FRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLL 319
F ID ++ L +V++N N + E ++ F N M+ +GAKGS VN I +L
Sbjct: 1476 FDGLIDSLFQPYLCRVSSNTNNLISMENIMNKFLNNGFSNMIFTGAKGSKVNYAMICGML 1535
Query: 320 GQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLI 379
Q L+GKR M SG+TLPSF Y+ RA G + F+ G++PQE+FFHCM+GREGLI
Sbjct: 1536 DQQYLDGKRVPRMRSGKTLPSFHRYDYGARACGLITDCFLEGLRPQEYFFHCMSGREGLI 1595
Query: 380 DTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQ 439
DTAVKT++SGY+QRCLVK +E + +HYD TVR+ D ++IQ LYGEDG+D ++ YL +
Sbjct: 1596 DTAVKTAKSGYIQRCLVKCMESVILHYDGTVRNEDNAIIQFLYGEDGIDPSRISYLDTPK 1655
Query: 440 FSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQ 499
+L+ + ++ + LL H M+ E+
Sbjct: 1656 ------------------DLISNYHVAFSKYLL---------------HDVVPKMERNER 1682
Query: 500 WYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSV---VKYTKGRTDASHV 556
++ D+ P+ + F P A+ G+ SE + + + D ++
Sbjct: 1683 LFEGRDRTD-------HWGDDPIETQFSPYAYMGATSERFREKMHHTIANDLNLADCYNL 1735
Query: 557 DKFYD-----MIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLG 611
+D ++ K SL +PGE++G+L AQS GEP+TQMTLNTFH AG NVT+G
Sbjct: 1736 PDDFDTQSASLLKSKYFRSLCDPGESIGILVAQSFGEPATQMTLNTFHLAGT--ENVTMG 1793
Query: 612 IPRLREILMMATKAIKTPSMEIPFLPD 638
IPRL+EI + +K P + +P D
Sbjct: 1794 IPRLKEIF-LNSKLTSKPMIYVPIKMD 1819
Score = 101 bits (252), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 121/261 (46%), Gaps = 52/261 (19%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL-CI 71
++EAS LMN + KDGSPL GL QD ++ G L+ +TFL EY NL+ AL C+
Sbjct: 758 RSEASHLMNSDFLFTSFKDGSPLRGLAQDFILGGLHLTSLETFLDYDEYCNLLQCALNCL 817
Query: 72 LNTE------------------------------------IRTLPPTIWKPMPLWTGKQV 95
L+ + I T PTI P LWTGKQ+
Sbjct: 818 LSRKDCFFFEKSRSSNSTWKIRNHSYLDPYAVVLNRTHFTIVTEEPTILFPRKLWTGKQL 877
Query: 96 LSTVIINLTPKDKVIIR-HGELLSGILDKKQFGSTQYGLVH---AVW------DTHVTIR 145
+++++ + DKV + + + + G Y ++W + V I+
Sbjct: 878 ITSILKTII--DKVAMETYNQRKDNEFMQNYKGINYYAKAKTDPSLWSFDPINECEVIIK 935
Query: 146 HGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRD 205
+ ELL G+LDK FG++ VH ++ G + A +L C +LF +LQ G +L + D
Sbjct: 936 NSELLQGVLDKLHFGASSNSFVHLCYELFGPKIAAVILDCFGRLFISFLQLRGTSLSLFD 995
Query: 206 ILVRQERDRKRTKIINKARRL 226
+++++ R + IN +R+
Sbjct: 996 FILKKD---AREEKINIRKRI 1013
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 68/119 (57%)
Query: 885 LLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGT 944
+D KLY NDI+ + TYGIEA I +E+K VF YGI++D RHLS ++D+MTH+G
Sbjct: 2463 FIDKTKLYCNDIYTIVKTYGIEAGRLCITKELKKVFEAYGIKIDFRHLSFISDFMTHTGD 2522
Query: 945 YVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGL 1003
+ +R+G+ + KM+FE + Q + D L S+ + G+ + GT +
Sbjct: 2523 LKSFSRHGLGCFRNVFHKMSFECATNFLTQGCVHNSVDYLSTASSSLFFGKPIKVGTNV 2581
>gi|397135924|gb|AFO11457.1| RNA polymerase I, partial [Peterozyma toletana]
Length = 870
Score = 238 bits (608), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 154/422 (36%), Positives = 227/422 (53%), Gaps = 45/422 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S + V Q + P+ P+ G++QD + K++LRD F+ E MN++Y I
Sbjct: 309 RAELSQICAVPLQIISPQSNKPVMGIVQDTLCGVRKMTLRDVFIEYDEVMNILY---WIP 365
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVI---INLTPKDKVIIRHGELLSGILDKKQFGST 129
+ + PTI KP PLWTGKQ+LS VI INL KD +K + S
Sbjct: 366 SWDGVIPEPTIVKPKPLWTGKQMLSMVIPKGINLERKD--------------EKFTYLSN 411
Query: 130 QYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKL 189
DT + I GE++ G+++KK G+T GL+HAV+ G + L + K+
Sbjct: 412 D--------DTGMLIVDGEIMLGVVNKKTVGATGGGLIHAVFREKGPQVCADLFGNMQKV 463
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
+L GF++G+ D + + T I A+ E A L +P +
Sbjct: 464 VNYWLLHYGFSIGIGDTIADAPTVKSITHTIVTAKEKVHEIILKAQRNELPPEPGMT--- 520
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
L+E++ Q +Q+ Q + + K T + Q NN++ MV +G+KGS
Sbjct: 521 LRESFE---QSVSQVLNQARDDVGKATADALQ-----------DWNNVKQMVSAGSKGSN 566
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+S +GQ +EGKR + R+LP F + SP + GFV+ ++ G+ PQEFFF
Sbjct: 567 INISQMSACVGQQIVEGKRIPFGFADRSLPHFTKDDYSPESRGFVENSYLRGLTPQEFFF 626
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H MAGREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S +++Q +YGEDGLD
Sbjct: 627 HAMAGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTARNSLGNVLQFVYGEDGLDA 686
Query: 430 TK 431
T+
Sbjct: 687 TQ 688
>gi|397135886|gb|AFO11438.1| RNA polymerase I, partial [Kurtzmaniella cleridarum]
Length = 872
Score = 238 bits (607), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 152/419 (36%), Positives = 222/419 (52%), Gaps = 39/419 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S + V Q + P+ P+ G++QD + K++LRD F+ + MN++Y I
Sbjct: 311 RAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDNFIEFDQVMNMLY---WIP 367
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N + PP I KP PLWTGKQ+LS I PK I R D K S +
Sbjct: 368 NWDGVIPPPAIVKPKPLWTGKQLLSMAI----PKGIHIQRFD-------DGKDLLSPK-- 414
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
D+ + I GE++ G++DKK G+T GL+H V G + L S + K+
Sbjct: 415 ------DSGMLIVDGEIIFGVVDKKTVGATGGGLIHTVMREKGPQVCAQLFSLIQKVVNY 468
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + E R T I+ A++ E +A L+ +P + L+E
Sbjct: 469 WLLHNGFSIGIGDTIADSETMRTVTTTIDAAKKKVQEIILDAQRNKLEPEPGMT---LRE 525
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
++ + + +V N + NN++ MV SG+KGS +N
Sbjct: 526 SF--------------EHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINI 571
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EGKR + R+LP F + SP GFV+ ++ G+ PQEFFFH M
Sbjct: 572 SQMSACVGQQIVEGKRIPFGFADRSLPHFTKDDYSPELKGFVENSYLRGLTPQEFFFHAM 631
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTK 431
AGREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S +IQ +YGEDG+D T+
Sbjct: 632 AGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFIYGEDGVDGTQ 690
>gi|448087303|ref|XP_004196296.1| Piso0_005751 [Millerozyma farinosa CBS 7064]
gi|359377718|emb|CCE86101.1| Piso0_005751 [Millerozyma farinosa CBS 7064]
Length = 1772
Score = 238 bits (607), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 153/419 (36%), Positives = 222/419 (52%), Gaps = 39/419 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S + V Q + P+ P+ G++QD + K++LRDTF+ + MN++Y + +
Sbjct: 503 RAELSEICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDTFIEYDQVMNMLYW-IPVW 561
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ I PP I KP PLWTGKQ+LS I PK G L D K S +
Sbjct: 562 DGVIP--PPAIVKPKPLWTGKQLLSMAI----PK-------GIHLQRFDDGKNLLSPK-- 606
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
D+ + I GE++ G++DKK GST GL+H V G + L L K+
Sbjct: 607 ------DSGMLIVDGEIMFGVVDKKTVGSTGGGLIHTVMREKGPQVCAQLFGSLQKVVNY 660
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + + T I A++ E +A LD +P + L+E
Sbjct: 661 WLLHNGFSIGIGDTIADASTMKNVTTTIEDAKKKVQEIINDAQQNKLDPEPGMT---LRE 717
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
++ + + +V N + NN++ MV SG+KGS +N
Sbjct: 718 SF--------------EHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINI 763
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EGKR + RTLP F + SP + GFV+ ++ G+ PQEFFFH M
Sbjct: 764 SQMSACVGQQIVEGKRIPFGFADRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAM 823
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTK 431
AGREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S +IQ +YGEDG+D T+
Sbjct: 824 AGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFIYGEDGIDGTQ 882
Score = 93.2 bits (230), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 68/98 (69%), Gaps = 1/98 (1%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
S+ +PGE VGV+AAQSIGEP+TQMTLNTFH+AG NVTLG+PRL+EIL +A K IKTP
Sbjct: 1062 SIVHPGEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVA-KNIKTP 1120
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKI 667
++ + ++ +KA + ++ T+ +V +I
Sbjct: 1121 ALTVYLQKEIAADIEKAKVVQSAIEHTTLKNVTSATEI 1158
Score = 77.4 bits (189), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 75/140 (53%), Gaps = 2/140 (1%)
Query: 868 LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 927
+L+TDG+N+ + + D + Y N+ + S GIEA + +E+ NV A G V
Sbjct: 1312 VLETDGVNLADVMAVPGV-DSTRTYSNNFIEILSVLGIEATRTALFKEILNVIAFDGSYV 1370
Query: 928 DPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRA 986
+ RH++L+ D MT G +A+ R+GI R + + + +FE +E + +A+ D R
Sbjct: 1371 NYRHMALLVDVMTSRGHLMAITRHGINRSDTGALMRCSFEETVEILLEAASSAELDDCRG 1430
Query: 987 PSARVMLGQECRQGTGLFQL 1006
S VMLGQ GTG F +
Sbjct: 1431 ISENVMLGQMAPLGTGAFDV 1450
>gi|397135910|gb|AFO11450.1| RNA polymerase I, partial [Yamadazyma scolyti]
Length = 863
Score = 238 bits (607), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 151/419 (36%), Positives = 220/419 (52%), Gaps = 41/419 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S + V Q + P+ P+ G++QD + K++LRD F+ + MN++Y I
Sbjct: 309 RAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDNFIEYDQVMNMLY---WIP 365
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N + PP + KP PLWTGKQ+LS I PK I R L S +L
Sbjct: 366 NWDGVIPPPAVLKPKPLWTGKQLLSMAI----PKGIHIQR---LESNLLSPN-------- 410
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
D + I GE++ G++DKK G+T GL+H V G + L + K+
Sbjct: 411 ------DNGMLIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPQVCAQLFGNIQKVVNF 464
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + E + T I +A+ E +A L+ +P + L+E
Sbjct: 465 WLLHNGFSIGIGDTIADSETMKTVTTTIEEAKTKVQEIILDAQRNKLEPEPGMT---LRE 521
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
++ + + +V N + NN++ MV SG+KGS +N
Sbjct: 522 SF--------------EHNVSRVLNQARDTAGRSAEMSLKDLNNVKQMVVSGSKGSFINI 567
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EGKR S RTLP F + SP + GF++ ++ G+ PQEFFFH M
Sbjct: 568 SQMSACVGQQIVEGKRIPFGFSDRTLPHFTKDDYSPESKGFIENSYLRGLTPQEFFFHAM 627
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTK 431
AGREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S +IQ +YGEDGLD T+
Sbjct: 628 AGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFVYGEDGLDGTQ 686
>gi|397135870|gb|AFO11430.1| RNA polymerase I, partial [Metschnikowia agaves]
Length = 872
Score = 238 bits (606), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 150/418 (35%), Positives = 222/418 (53%), Gaps = 39/418 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S + V Q + P+ P+ G++QD + K++LRD F+ + MN++Y I
Sbjct: 311 RAEMSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIEYEQVMNMLY---WIP 367
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N + PP + KP PLWTGKQ+LS I PK G L D + S +
Sbjct: 368 NWDGVIPPPAVIKPKPLWTGKQLLSMAI----PK-------GIHLQRFDDGRDMLSPK-- 414
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
D + I GE++ G++DKK G+T GL+H V G + L S + K+
Sbjct: 415 ------DKGILIVDGEIIFGVVDKKTVGATGGGLIHTVMREKGPQICAQLFSSIQKVVNY 468
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + ++ R T I +A++ E +A L+ +P + L+E
Sbjct: 469 WLLHNGFSIGIGDTIADKDTMRDVTITIQEAKQKVQEIILDAQQNKLEPEPGMT---LRE 525
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
++ + + +V N + NN++ MV SG+KGS +N
Sbjct: 526 SF--------------EHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVTSGSKGSFINI 571
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EGKR + RTLP F + SP + GFV+ ++ G+ PQEFFFH M
Sbjct: 572 SQMSACVGQQIVEGKRIPFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAM 631
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVT 430
AGREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S +IQ +YGEDG+D T
Sbjct: 632 AGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFVYGEDGIDGT 689
>gi|160331315|ref|XP_001712365.1| rpa1 [Hemiselmis andersenii]
gi|159765813|gb|ABW98040.1| rpa1 [Hemiselmis andersenii]
Length = 1496
Score = 238 bits (606), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 148/413 (35%), Positives = 232/413 (56%), Gaps = 32/413 (7%)
Query: 28 VPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCILNTEIRTLP----PTI 83
+P + + LIQD +I+ L+ +DTF ++ N ++Q L L ++ P+I
Sbjct: 619 IPTQKTIMRSLIQDSIIASVFLTKKDTFFSQ----NNLFQILGFLEKPKKSFENLFFPSI 674
Query: 84 WKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYGLVHAVWDTHVT 143
KP LWTGKQ++ + K+ +I + + + YGL +T +
Sbjct: 675 LKPKILWTGKQLIFILSTLFFKKNWLI--------SLESRSKLTKLFYGLD----ETKIL 722
Query: 144 IRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLG 202
IR GELL GILD Q G ++GL+HA + +G + LSC K+ +++ QR GF++G
Sbjct: 723 IRKGELLRGILDASQIGKNKHGLLHAFNEIYGNYVSDLFLSCFGKI-SIFFQRYHGFSVG 781
Query: 203 VRDILVRQERDRKRTKIINKAR-----RLGTEAACNALGLPL-DTDPEIISSQLQ--EAY 254
+ +++++++ D R K K + L + N L L L D ++ Q + +
Sbjct: 782 IEELILKKKIDYNRLKTFRKEKLLFKIYLKKTLSKNGLFLNLYDQKKNRLNLQFKILAFF 841
Query: 255 ASI-PQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTM 313
++ P F + I R + +L +++NI + + GL + N M SGAKG+++N
Sbjct: 842 CTLNPLFESFI-RSLRIILGVISSNILENLIIGGLQKAPQINGFSKMTNSGAKGTSLNIF 900
Query: 314 QISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMA 373
QI LGQ ELEG+ G+ LP+F P+++S RA GF+ RF+TGI E+FFHCMA
Sbjct: 901 QICSSLGQTELEGEFFHFGPGGKNLPTFPPFDLSARANGFIFQRFLTGIPQPEYFFHCMA 960
Query: 374 GREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDG 426
GREGL+DT++KTS+SGY+QR LVKHLE L V YD TVR S+ S+ Q++Y ++G
Sbjct: 961 GREGLLDTSIKTSQSGYVQRSLVKHLESLKVSYDKTVRFSNGSISQLIYSKNG 1013
Score = 105 bits (261), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 86/144 (59%), Gaps = 1/144 (0%)
Query: 866 KHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 925
K ++ TDG+N F + L+DL K++ NDI+ + + YGIEAA ++RE+ +F + I
Sbjct: 1353 KKIIHTDGVNFFFFWKNGDLVDLKKIFTNDIYALMNRYGIEAARETLVRELNTIFQIQSI 1412
Query: 926 EVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLR 985
++ HL L++DY+T G + +R GI S +QK+T+E LE + S+ + D L
Sbjct: 1413 LINYHHLDLISDYITRLGNFRPFSRKGI-CEESPLQKITYETALEFLINFSLNKQIDFLD 1471
Query: 986 APSARVMLGQECRQGTGLFQLRNR 1009
+ S + LG+ C+ GTG F + +R
Sbjct: 1472 SASGSISLGKICKMGTGTFDIISR 1495
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 69/115 (60%), Gaps = 10/115 (8%)
Query: 559 FYDMIFY---KNLL-----SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTL 610
F+D +F+ K L +L PG+ VG++A+QSIGEP TQMTLNTFHFAG+ L
Sbjct: 1096 FFDKMFFSEEKKFLKLFFSNLVEPGDPVGIIASQSIGEPCTQMTLNTFHFAGKLVSKNNL 1155
Query: 611 GIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKV 665
GIPRLREIL+ A++ K P+M + F ++ + K + I D++E +
Sbjct: 1156 GIPRLREILLTASQFPKNPTMSVYFKKNLS--SSIYTFMEKRLRPIFFYDLIETI 1208
>gi|302661310|ref|XP_003022324.1| hypothetical protein TRV_03535 [Trichophyton verrucosum HKI 0517]
gi|291186264|gb|EFE41706.1| hypothetical protein TRV_03535 [Trichophyton verrucosum HKI 0517]
Length = 1444
Score = 238 bits (606), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 190/634 (29%), Positives = 289/634 (45%), Gaps = 66/634 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V S PK+G P+ IQD + + LS +D F R + + L +L
Sbjct: 530 RAEAMELMGVKSNLATPKNGEPIIAAIQDFITAAYLLSSKDNFFDRKTFTQI---CLSML 586
Query: 73 NTEIR--TLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
++ R PP KP LWTGKQV S + + P ++ L + K
Sbjct: 587 DSSTRFELPPPATIKPQMLWTGKQVFSVL---MRPNKDCPVKV-NLDAACRQLKLVKGQP 642
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQY-GLVHAVWDTHGAEHAISLLSCLAKL 189
L D + IR+ E+L G+ DK G+ + + + G A ++ L+KL
Sbjct: 643 RDLCEN--DGWLCIRNSEMLCGVADKSTIGAGKKDNIFFVIQRDFGYAAAAEAMNRLSKL 700
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
+L GF++G+ D+ + + + +IN A + C+ L I ++
Sbjct: 701 SARWLTNKGFSIGITDVYPGESLVKLKDTLINTAFQ-----QCDDL---------IAAAS 746
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
++ R + + +L+KV + C+ E P M G+KGS
Sbjct: 747 KEKPQMGKSDSRQTAENEITGILNKVRQQAGEYCISEVSKHNAPL----IMATCGSKGSN 802
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ ++GQ +E R + RTLP F + A GFV F +G+ P EF F
Sbjct: 803 INVSQMVAVVGQQSIENARVSKGFQDRTLPHFARHSQHALAKGFVRNSFFSGLTPTEFLF 862
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD- 428
H M+GREGLIDTAVKT+ +GY+ R L+K LE L+ YD TVRDS +IQ YG+D LD
Sbjct: 863 HAMSGREGLIDTAVKTAETGYMSRRLMKSLEDLSTRYDNTVRDSSSFIIQFQYGDDQLDP 922
Query: 429 ----VTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFI 484
+ + D+ F+ E +Y + LS +L L + +
Sbjct: 923 VNMEASAKPVHFDRTFTHAEST-----TYDK-----DEKGLSADEILALCEE-------L 965
Query: 485 FSPHRTKFT-MDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSV 543
+P R K DLL L KA + + +S+ + + + + L S
Sbjct: 966 IAPERKKLVRYDLLGN--TLSYKAENDFATDQWESNRDFLSSIE--EYVAAKAAQLRPSD 1021
Query: 544 VKYTKGRTDASHVDK--------FYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTL 595
+ K + +H K F K + + PG ++G + AQSIGEP TQMTL
Sbjct: 1022 NEEGKEQMAFTHTSKISARTLKAFITSCLDKYMRAHVEPGHSIGAIGAQSIGEPGTQMTL 1081
Query: 596 NTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
TFHFAG M++T G+PR++EI+ A+K I TP
Sbjct: 1082 KTFHFAGVAGMSITQGVPRIKEII-NASKEISTP 1114
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 64/115 (55%), Gaps = 3/115 (2%)
Query: 893 VNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNG 952
N + M GIEAA II E+ +V + G+ +DPRH+ L+AD MT+ G + + R G
Sbjct: 1290 TNHVMEMRDVLGIEAARTTIIDEISSVMS--GMAIDPRHMQLLADVMTYKGEVLGITRFG 1347
Query: 953 I-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+ ++ S +Q +FE + + A GR D+++ S +++G+ GTG ++
Sbjct: 1348 LAKIRDSVLQLASFEKTADHLFDAGGAGRRDTVQGVSECIIMGKTISLGTGSMEV 1402
>gi|242073562|ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [Sorghum bicolor]
gi|241937900|gb|EES11045.1| hypothetical protein SORBIDRAFT_06g021120 [Sorghum bicolor]
Length = 1391
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 218/756 (28%), Positives = 345/756 (45%), Gaps = 89/756 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLV-YQALCI 71
+ EA LM V + PK+G L QD + S ++ +DTF R+ + L Y +
Sbjct: 504 RTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFLVTRKDTFYDRSSFTLLCSYLGDAM 563
Query: 72 LNTEIRTLPPTIWKPMPLWTGKQVLST---------VIINLTPKDKVIIRHGELLSGILD 122
N ++ T P + KP+ LWTGKQ+ S V +NL ++K+
Sbjct: 564 ENIDLPT--PALIKPIELWTGKQLFSVLVRPNAHTRVFLNLAVQEKI------YSKKKGK 615
Query: 123 KKQFGSTQYGL-VHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAI 180
K+ T G D +V R+ ELLSG + K G+ + GL + + + A
Sbjct: 616 KEAGEETMCGRETMCPNDGYVYFRNSELLSGQVGKATLGNGNKDGLYSVLLRDYNSHAAA 675
Query: 181 SLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLD 240
S ++ LAK ++ GF++GV D+ + +R++ K I+ G C+
Sbjct: 676 SCMNRLAKFSARFIGNHGFSIGVDDVQPGEHLNRQKKKEID-----GGYKKCH------- 723
Query: 241 TDPEIISSQLQEAYASIPQFRAQ--IDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQ 298
++IS + A A P A ++ +L+++ + VC+ P
Sbjct: 724 ---DLISLFAKGALALHPGCNAAQTLEHNITGVLNEIRSIAGNVCMDTLHWRNSPL---- 776
Query: 299 FMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRF 358
M + G+KGS +N Q+ +GQ + G+R RTLP F +P A GFV F
Sbjct: 777 IMSQCGSKGSPINISQMVACVGQQSVGGRRAPDGFLNRTLPHFPINSKTPAAKGFVANSF 836
Query: 359 MTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLI 418
TG+ EFFFH M GREGL+DTAVKT+ +GY+ R L+K LE L+V YD TVR++ ++
Sbjct: 837 YTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASGGIV 896
Query: 419 QVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSS 478
Q LYG+DG+D K + +D + PL+L L + +
Sbjct: 897 QFLYGDDGMDPAKMEG---------KDGM----------------PLNLDQLFMKVMATC 931
Query: 479 -GKPNFIFSPHRTKFTMD--LLEQWYQLDDKARKKYRKKFKACPQPLISTFQP------- 528
+ + SP K ++ LL+ D ++++K I +
Sbjct: 932 PQRGSDTLSPEAIKQMLEDKLLQHDTSSDGGCSEEFKKNLTEFLDKRIELMKCTRRALHL 991
Query: 529 -DAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIG 587
+ H + +SV G A + F D + G ++G + AQSIG
Sbjct: 992 HEDHVEKKDSCVEESVAAIISG-ISAKQLQVFLDTCLSRYQSKKIEAGASIGAIGAQSIG 1050
Query: 588 EPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKAN 647
EP TQMTL TFHFAG MNVTLG+PR++EI+ A K I TP + L K + +
Sbjct: 1051 EPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAARK-ISTPIITAQLL---SKKDVLSA 1106
Query: 648 RLAK-SMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCFIPA-HMYRDKTSVKPSKII 705
R+ K SM + + +V ++I + S +P++ ++ I + HM SV+ S I+
Sbjct: 1107 RIVKGSMEKAVLGEVAVAIQI---VLKSSQPNLIVKLDMQLIESLHMGISADSVQLS-IL 1162
Query: 706 DHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQME 741
+H + K LK V + RA + ++ + Q+E
Sbjct: 1163 NHPKIK-LKSEHVRVIDRAKLRIYPAGTDKRKLQLE 1197
Score = 79.7 bits (195), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 68/125 (54%), Gaps = 1/125 (0%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D K N I T GIEAA R II E++ +G+ +D RH+ L+AD MT+ G
Sbjct: 1251 VDATKTKSNHIMETNQTLGIEAARRSIIDEIQYTMKSHGMNIDRRHMMLLADLMTYKGEI 1310
Query: 946 VAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
+ + R GI ++ S + +FE E + AS GRED + S +++G + GTG+
Sbjct: 1311 LGITRYGIAKMKSSVLMLASFEKTSEHLFNASYSGREDQIEGVSECIIMGIPMQLGTGIL 1370
Query: 1005 QLRNR 1009
++R R
Sbjct: 1371 KVRQR 1375
>gi|334187204|ref|NP_195305.2| DNA-directed RNA polymerase II subunit RPB1 [Arabidopsis thaliana]
gi|322510106|sp|P18616.3|RPB1_ARATH RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase III largest subunit
gi|332661173|gb|AEE86573.1| DNA-directed RNA polymerase II subunit RPB1 [Arabidopsis thaliana]
Length = 1839
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 154/452 (34%), Positives = 228/452 (50%), Gaps = 45/452 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ G++QD ++ K++ RDTF+ + +MN + +
Sbjct: 512 RAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNTL---MWWE 568
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + + P I KP PLWTGKQV + +I PK ++R+ T+ G
Sbjct: 569 DFDGKVPAPAILKPRPLWTGKQVFNLII----PKQINLLRYSAW---------HADTETG 615
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ DT V I GELL+G L KK G++ LVH +W+ G + A L L
Sbjct: 616 FI-TPGDTQVRIERGELLAGTLCKKTLGTSNGSLVHVIWEEVGPDAARKFLGHTQWLVNY 674
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L + GFT+G+ D + K + I+ A+ + G LD +P
Sbjct: 675 WLLQNGFTIGIGDTIADSSTMEKINETISNAKTAVKDLIRQFQGKELDPEPGRT------ 728
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
R + + +L+K ++ + L E NNL+ MV +G+KGS +N
Sbjct: 729 -------MRDTFENRVNQVLNKARDDAGSSAQ-KSLAE---TNNLKAMVTAGSKGSFINI 777
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q++ +GQ +EGKR GRTLP F + P + GFV+ ++ G+ PQEFFFH M
Sbjct: 778 SQMTACVGQQNVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 837
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVT-- 430
GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +IQ LYGEDG+D
Sbjct: 838 GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWI 897
Query: 431 KRQYLT---------DKQFSFLEDNIKWICSY 453
+ Q L D+ F + D+ W +Y
Sbjct: 898 ESQKLDSLKMKKSEFDRTFKYEIDDENWNPTY 929
Score = 138 bits (347), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 134/458 (29%), Positives = 217/458 (47%), Gaps = 63/458 (13%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
L SL PGE +G +AAQSIGEP+TQMTLNTFH+AG NVTLG+PRLREI+ +A K IK
Sbjct: 1074 LQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA-KRIK 1132
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCF 687
TPS+ + P+ K ++ A + ++ T+ V + ++ W + P + + F F
Sbjct: 1133 TPSLSVYLTPEASKSKEGAKTVQCALEYTTLRSVTQATEV--WYDPDPMSTI-IEEDFEF 1189
Query: 688 IPAHMYRDKTSVKPSKIIDHFERKFL-KELEVAIAKRAAQGLKNMNIEQSRDQMEDDV-- 744
+ ++ V P KI R L +E+ V A + +N+E +DD+
Sbjct: 1190 VRSYYEMPDEDVSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLE-----FDDDLTC 1244
Query: 745 --EDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSER 802
DD A + R+ + +DE E +Q E ED+ + +
Sbjct: 1245 IFNDD------NAQKLILRIRIMNDEGPKGE--LQD------------ESAEDDVFLKKI 1284
Query: 803 EEDDNTSNIGERFKIE-FRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNLFE 861
E SN+ + D VF+K V K +D++ F+
Sbjct: 1285 E-----SNMLTEMALRGIPDINKVFIKQ-------VRKSRFDEEGG------------FK 1320
Query: 862 EKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 921
E + +L T+G+N+ + + +D + N + + GIEA R ++ E++ V +
Sbjct: 1321 TSE-EWMLDTEGVNLLAVMCHED-VDPKRTTSNHLIEIIEVLGIEAVRRALLDELRVVIS 1378
Query: 922 VYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSF-IQKMTFEMPLEKIRQASMQGR 980
G V+ RHL+++ D MT+ G +A+ R+GI N + + + +FE ++ + A+
Sbjct: 1379 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAE 1438
Query: 981 EDSLRAPSARVMLGQECRQGTGLFQLR-NREKKKKKVE 1017
D LR + +MLGQ GTG +L N E K +E
Sbjct: 1439 TDCLRGVTENIMLGQLAPIGTGDCELYLNDEMLKNAIE 1476
>gi|120561223|gb|ABM26997.1| RNA polymerase II largest subunit, partial [Gigaspora gigantea]
Length = 1039
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 150/417 (35%), Positives = 220/417 (52%), Gaps = 33/417 (7%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAE S + V Q + P+ P+ G++QD + + K + RD FLT+ MN++ + +L
Sbjct: 443 KAEISEICMVPKQVVSPQSNKPVMGIVQDTLCAVRKFTKRDCFLTKDLVMNIL---MWVL 499
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + R P I KP+PLWTGKQ+LS +I D +RH SG + + G
Sbjct: 500 DWDGRLPIPCILKPIPLWTGKQILSMIIPKGINSDN--LRH----SG-HPENEHSDISPG 552
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
DT V I GELL GI+ KK G+T GLVH + + G E A L+ +
Sbjct: 553 ------DTKVLIEDGELLCGIVCKKTVGATHQGLVHVIMNEMGPEKAKDFLNGCQAVVNQ 606
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L + GF++G+ D + E + T I+ A+ E A L+ P + +
Sbjct: 607 WLLQNGFSIGIGDTIADDETMKNITNTISNAKSRVAEIIGEAQQDKLECAPGMTIRET-- 664
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
F +++++ + D + Q E NN++ MV +G+KGS +N
Sbjct: 665 -------FEHKVNKELNTARDAAGKSAEQSLKEE--------NNVKQMVIAGSKGSFINI 709
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q++ +GQ +EGKR RTLP F + SP + GFV+ ++ G+ PQEFFFH M
Sbjct: 710 SQMTACVGQQNVEGKRIPFGFKFRTLPHFTKDDHSPESRGFVENCYLRGLTPQEFFFHAM 769
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
GREGLIDTAVKT+ +GY+QR LVK LE + V YD TVR+S ++Q YGEDG+D
Sbjct: 770 GGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDIVQFCYGEDGMDA 826
>gi|397135904|gb|AFO11447.1| RNA polymerase I, partial [Meyerozyma guilliermondii]
Length = 872
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 149/419 (35%), Positives = 225/419 (53%), Gaps = 39/419 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S + V Q + P+ P+ G++QD + K++LRD F+ + MN++Y I
Sbjct: 311 RAELSEICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDIFIEYDQVMNMLY---WIP 367
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + PP + KP PLWTGKQ+LS I PK GI ++ G T
Sbjct: 368 DWDGVIPPPAVIKPKPLWTGKQLLSMAI----PK------------GIHIQRLDGGTS-- 409
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ + DT + I GE++ G++DKK G+T GL+H V G + L S L K+
Sbjct: 410 -MLSPKDTGILIVDGEIMFGVVDKKTVGATSGGLIHTVMREKGPQVCAKLFSALQKVVNY 468
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + + + T I +A++ E +A L+ +P + L+E
Sbjct: 469 WLLHNGFSIGIGDTIADSDTMKTVTTTIEEAKQKVQEIILDAQKNRLEPEPGMT---LRE 525
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
++ + + +V N + NN++ MV SG+KGS +N
Sbjct: 526 SF--------------EHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINI 571
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EGKR + R+LP F + SP + GFV+ ++ G+ PQEFFFH M
Sbjct: 572 SQMSACVGQQIVEGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAM 631
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTK 431
AGREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S +IQ +YGEDG+D T+
Sbjct: 632 AGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFVYGEDGVDGTQ 690
>gi|430813213|emb|CCJ29412.1| unnamed protein product [Pneumocystis jirovecii]
Length = 1390
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 185/657 (28%), Positives = 289/657 (43%), Gaps = 130/657 (19%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM+V + + P++G P+ IQD V + +S +D F R + ++ +
Sbjct: 513 RAEAIELMSVKNNLVTPRNGDPIIAAIQDFVTASYLISQKDNFYDRKTFTHIC-SFMVDA 571
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N I P I KP+P + L + +PK GI D
Sbjct: 572 NMHIDLPSPVIIKPVPYGQESKYLMSF---SSPK------------GIPD---------- 606
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFG-STQYGLVHAVWDTHGAEHAISLLSCLAKLFT 191
+ D ++ IR E++ G++DK G + + + + +G A ++ LAKL
Sbjct: 607 --LCINDGYLLIRGSEIMCGVMDKSTVGDGKKNSIFYVILKNYGPTEAAEAMNRLAKLCA 664
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQ 251
++ GF++G+ D+ +K+ ++ A + + L+ P + Q
Sbjct: 665 RWIGNHGFSIGINDVQPGVLLKKKKESLVKAAYQSCDDLIYALSSGKLENQPGCDAEQTL 724
Query: 252 EAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVN 311
EA S +L KV +++ Q+C+ E N M G+KGS +N
Sbjct: 725 EAKVS-------------GILSKVRDDVGQICMSELA----RTNASLIMATCGSKGSKIN 767
Query: 312 TMQISCLLGQIELEGKRPAMMVSGRTLPSFLP-YEVSPRAGGFVDGRFMTGIQPQEFFFH 370
Q+ +GQ + G R R+LP F + P A GFV F +G+ P EF FH
Sbjct: 768 VSQMVSCVGQQIISGSRVPNGFQDRSLPHFQKNCKFQPPAKGFVKNSFYSGLTPTEFLFH 827
Query: 371 CMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV- 429
++GREGL+DTAVKT+ +GY+ R L+K LE L++ YD TVR+S ++Q +YG+DGLD
Sbjct: 828 AISGREGLVDTAVKTAETGYMSRRLMKSLEDLSLQYDGTVRNSSSGIVQFIYGDDGLDPT 887
Query: 430 -------------------------------------TKRQYLTDKQFSFLEDNIKWICS 452
T R+YL + +F +N K
Sbjct: 888 YLEGDNCPVEFSRTWNHCHNITSKIQSKGLLPYEIIETTRKYLENPKFKNCTENFK---- 943
Query: 453 YKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYR 512
ILN ++K+ +A L + P+F+ + +K+ + E+ ++D
Sbjct: 944 -NSILNFIQKN---IAEHLAAIRERRNLPSFLEHTNDSKYKNIINEESLEID-------- 991
Query: 513 KKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLA 572
S+ DS+ K TK + + + K + S
Sbjct: 992 -----------------------SKKTVDSIFKVTK-----HQLLTYLQLCLEKYIKSKV 1023
Query: 573 NPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
PG VG + AQSIGEP TQMTL TFHFAG MNVTLG+PR++EI+ A K I TP
Sbjct: 1024 EPGTAVGAVGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII-NAAKIISTP 1079
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 66/121 (54%), Gaps = 1/121 (0%)
Query: 890 KLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMN 949
K N + M GIEAA II+E+ + +G+ +DPRH+ L+ D MT+ G + +
Sbjct: 1243 KTSTNHVMEMKQVLGIEAARASIIKEIDITMSSHGMNIDPRHVMLLGDVMTYRGEILGIT 1302
Query: 950 RNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRN 1008
R G+ ++ S + +FE + + A+ + +DS+ S ++LG+ GTGLF+L
Sbjct: 1303 RFGVAKMKNSVLMLASFEKTTDHLFDAAARLTKDSIEGVSECIILGKPAPIGTGLFRLVR 1362
Query: 1009 R 1009
R
Sbjct: 1363 R 1363
>gi|4883421|emb|CAA21466.2| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain
[Arabidopsis thaliana]
gi|7270532|emb|CAB81489.1| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain
[Arabidopsis thaliana]
Length = 1840
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 154/452 (34%), Positives = 228/452 (50%), Gaps = 45/452 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ G++QD ++ K++ RDTF+ + +MN + +
Sbjct: 513 RAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNTL---MWWE 569
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + + P I KP PLWTGKQV + +I PK ++R+ T+ G
Sbjct: 570 DFDGKVPAPAILKPRPLWTGKQVFNLII----PKQINLLRYSAW---------HADTETG 616
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ DT V I GELL+G L KK G++ LVH +W+ G + A L L
Sbjct: 617 FITP-GDTQVRIERGELLAGTLCKKTLGTSNGSLVHVIWEEVGPDAARKFLGHTQWLVNY 675
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L + GFT+G+ D + K + I+ A+ + G LD +P
Sbjct: 676 WLLQNGFTIGIGDTIADSSTMEKINETISNAKTAVKDLIRQFQGKELDPEPGRT------ 729
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
R + + +L+K ++ + L E NNL+ MV +G+KGS +N
Sbjct: 730 -------MRDTFENRVNQVLNKARDDAGSSAQ-KSLAE---TNNLKAMVTAGSKGSFINI 778
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q++ +GQ +EGKR GRTLP F + P + GFV+ ++ G+ PQEFFFH M
Sbjct: 779 SQMTACVGQQNVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 838
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVT-- 430
GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +IQ LYGEDG+D
Sbjct: 839 GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWI 898
Query: 431 KRQYLT---------DKQFSFLEDNIKWICSY 453
+ Q L D+ F + D+ W +Y
Sbjct: 899 ESQKLDSLKMKKSEFDRTFKYEIDDENWNPTY 930
Score = 138 bits (347), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 134/458 (29%), Positives = 217/458 (47%), Gaps = 63/458 (13%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
L SL PGE +G +AAQSIGEP+TQMTLNTFH+AG NVTLG+PRLREI+ +A K IK
Sbjct: 1075 LQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA-KRIK 1133
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCF 687
TPS+ + P+ K ++ A + ++ T+ V + ++ W + P + + F F
Sbjct: 1134 TPSLSVYLTPEASKSKEGAKTVQCALEYTTLRSVTQATEV--WYDPDPMSTI-IEEDFEF 1190
Query: 688 IPAHMYRDKTSVKPSKIIDHFERKFL-KELEVAIAKRAAQGLKNMNIEQSRDQMEDDV-- 744
+ ++ V P KI R L +E+ V A + +N+E +DD+
Sbjct: 1191 VRSYYEMPDEDVSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLE-----FDDDLTC 1245
Query: 745 --EDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSER 802
DD A + R+ + +DE E +Q E ED+ + +
Sbjct: 1246 IFNDD------NAQKLILRIRIMNDEGPKGE--LQD------------ESAEDDVFLKKI 1285
Query: 803 EEDDNTSNIGERFKIE-FRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNLFE 861
E SN+ + D VF+K V K +D++ F+
Sbjct: 1286 E-----SNMLTEMALRGIPDINKVFIKQ-------VRKSRFDEEGG------------FK 1321
Query: 862 EKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 921
E + +L T+G+N+ + + +D + N + + GIEA R ++ E++ V +
Sbjct: 1322 TSE-EWMLDTEGVNLLAVMCHED-VDPKRTTSNHLIEIIEVLGIEAVRRALLDELRVVIS 1379
Query: 922 VYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSF-IQKMTFEMPLEKIRQASMQGR 980
G V+ RHL+++ D MT+ G +A+ R+GI N + + + +FE ++ + A+
Sbjct: 1380 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAE 1439
Query: 981 EDSLRAPSARVMLGQECRQGTGLFQLR-NREKKKKKVE 1017
D LR + +MLGQ GTG +L N E K +E
Sbjct: 1440 TDCLRGVTENIMLGQLAPIGTGDCELYLNDEMLKNAIE 1477
>gi|302500232|ref|XP_003012110.1| hypothetical protein ARB_01618 [Arthroderma benhamiae CBS 112371]
gi|291175666|gb|EFE31470.1| hypothetical protein ARB_01618 [Arthroderma benhamiae CBS 112371]
Length = 1444
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 190/634 (29%), Positives = 289/634 (45%), Gaps = 66/634 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V S PK+G P+ IQD + + LS +D F R + + L +L
Sbjct: 530 RAEAMELMGVKSNLATPKNGEPIIAAIQDFITAAYLLSSKDNFFDRKTFTQI---CLSML 586
Query: 73 NTEIR--TLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
++ R PP KP LWTGKQV S + + P ++ L + K
Sbjct: 587 DSSTRFELPPPATIKPQMLWTGKQVFSVL---MRPNKDCPVKV-NLDAACRQLKLVKGQP 642
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQY-GLVHAVWDTHGAEHAISLLSCLAKL 189
L D + IR+ E+L G+ DK G+ + + + G A ++ L+KL
Sbjct: 643 RDLCEN--DGWLCIRNSEMLCGVADKSTIGAGKKDNIFFVIQRDFGYAAAAEAMNRLSKL 700
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
+L GF++G+ D+ + + + +IN A + C+ L I ++
Sbjct: 701 SARWLTNKGFSIGITDVYPGESLVKLKDTLINTAFQ-----QCDDL---------ITAAS 746
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
++ R + + +L+KV + C+ E P M G+KGS
Sbjct: 747 KEKPQMGKSDSRQTAENEITGILNKVRQQAGEYCISELSKHNAPL----IMATCGSKGSN 802
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ ++GQ +E R + RTLP F + A GFV F +G+ P EF F
Sbjct: 803 INVSQMVAVVGQQSIENARVSKGFQDRTLPHFARHSQHALAKGFVRNSFFSGLTPTEFLF 862
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD- 428
H M+GREGLIDTAVKT+ +GY+ R L+K LE L+ YD TVRDS +IQ YG+D LD
Sbjct: 863 HAMSGREGLIDTAVKTAETGYMSRRLMKSLEDLSTRYDNTVRDSSSFIIQFQYGDDQLDP 922
Query: 429 ----VTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFI 484
+ + D+ F+ E +Y + LS +L L + +
Sbjct: 923 VNMEASAKPVHFDRTFTHAEST-----TYDK-----DEKGLSADEILALCEE-------L 965
Query: 485 FSPHRTKFT-MDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSV 543
+P R K DLL L KA + + +S+ + + + + L S
Sbjct: 966 IAPERKKLVRYDLLGN--TLSYKAENDFATDQWESNRDFLSSIE--EYVAAKAAQLRPSD 1021
Query: 544 VKYTKGRTDASHVDK--------FYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTL 595
+ K + +H K F K + + PG ++G + AQSIGEP TQMTL
Sbjct: 1022 NEEGKEQMAFTHTSKISARTLKAFITSCLDKYMRAHVEPGHSIGAIGAQSIGEPGTQMTL 1081
Query: 596 NTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
TFHFAG M++T G+PR++EI+ A+K I TP
Sbjct: 1082 KTFHFAGVAGMSITQGVPRIKEII-NASKEISTP 1114
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 64/115 (55%), Gaps = 3/115 (2%)
Query: 893 VNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNG 952
N + M GIEAA II E+ +V + G+ +DPRH+ L+AD MT+ G + + R G
Sbjct: 1290 TNHVMEMRDVLGIEAARTTIIDEISSVMS--GMAIDPRHMQLLADVMTYKGEVLGITRFG 1347
Query: 953 I-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+ ++ S +Q +FE + + A GR D+++ S +++G+ GTG ++
Sbjct: 1348 LAKIRDSVLQLASFEKTADHLFDAGGAGRRDTVQGVSECIIMGKTISLGTGSMEV 1402
>gi|188532149|gb|ACD63086.1| RNA polymerase II largest subunit [Liriodendron tulipifera]
Length = 1010
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 155/458 (33%), Positives = 230/458 (50%), Gaps = 57/458 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ G++QD ++ K++ RDTF+ + +MN++ +
Sbjct: 430 RAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL---MWWE 486
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR----HGELLSGILDKKQFGS 128
+ + + P + KP PLWTGKQV + +I PK +IR H E +G +
Sbjct: 487 DFDGKIPAPAVLKPRPLWTGKQVFNLII----PKQINLIRTSAWHSEAETGFITPG---- 538
Query: 129 TQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAK 188
DT V I GELL+G L KK G++ L+H +W+ G + A L
Sbjct: 539 ----------DTQVRIERGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQW 588
Query: 189 LFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISS 248
L +L + GF++G+ D + K + I+KA+ E A L+ +P
Sbjct: 589 LVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIKAAQDKQLEAEP----- 643
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGS 308
+ F ++++ D ++ Q L E +NNL+ MV +G+KGS
Sbjct: 644 ----GRTMMESFENRVNQVLNKARDDAGSSA-QKSLSE-------SNNLKAMVTAGSKGS 691
Query: 309 TVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFF 368
+N Q++ +GQ +EGKR RTLP F + P + GFV+ ++ G+ PQEFF
Sbjct: 692 FINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFF 751
Query: 369 FHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
FH M GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +IQ LYGEDG+D
Sbjct: 752 FHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 811
Query: 429 VT-------------KRQYLTDKQFSFLEDNIKWICSY 453
KR++ D F + DN W SY
Sbjct: 812 AVWIESQKLDSLKMKKREF--DNVFRYEFDNANWNPSY 847
>gi|156094456|ref|XP_001613265.1| DNA-directed RNA polymerase I 190 kDa polypeptide [Plasmodium vivax
Sal-1]
gi|148802139|gb|EDL43538.1| DNA-directed RNA polymerase I 190 kDa polypeptide, putative
[Plasmodium vivax]
Length = 2695
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 155/445 (34%), Positives = 230/445 (51%), Gaps = 45/445 (10%)
Query: 260 FRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLL 319
F ID ++ L +V++N N + E L+ F N M+ +GAKGS VN I +L
Sbjct: 1504 FDGLIDSLFQPYLCRVSSNTNNLISMENLMNKFLNNGFSNMIFTGAKGSKVNYAMICGML 1563
Query: 320 GQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLI 379
Q LEGKR M SG+TLPSF Y+ RA G + F+ G++PQE+FFHCM+GREGLI
Sbjct: 1564 DQQYLEGKRVPRMRSGKTLPSFHRYDYGARACGLITDCFLEGLRPQEYFFHCMSGREGLI 1623
Query: 380 DTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQ 439
DTAVKT++SGY+QRCL+K +E + +HYD TVR+ D +++Q LYGEDG+D ++
Sbjct: 1624 DTAVKTAKSGYIQRCLIKCMESVILHYDGTVRNEDNAIVQFLYGEDGIDPSR-------- 1675
Query: 440 FSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQ 499
S+L+ + + +Y+V + LL + +F +
Sbjct: 1676 ISYLDSSRDLLSNYQVAFS---------KYLLHDEVPRMQRNERLFWGSGESGESGGGSE 1726
Query: 500 WYQLDDKARKKYRKKFKACP-QPLISTFQPDAHFGSISENLADSV---VKYTKGRTDASH 555
Q D R P PL + F P A+ G+ SE + + + D +
Sbjct: 1727 TDQRCDGEDGDGR----GVPGDPLETRFSPYAYIGATSERFREKLRHTIANDLNLADCYN 1782
Query: 556 VDKFYD-----MIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTL 610
+ + +D ++ K SL +PGE++G+L AQS GEP+TQMTLNTFH A G NVT+
Sbjct: 1783 LPEDFDSLSASLLKSKYFRSLCDPGESIGILVAQSFGEPATQMTLNTFHLA--GTENVTM 1840
Query: 611 GIPRLREILMMATKAIKTPSMEIPFL--------PDMPKLEKKANRLA----KSMTRITM 658
GIPRL+EI + +K P + +P D +++ N +A + I +
Sbjct: 1841 GIPRLKEIF-LTSKLTSKPMIYVPIKMEARGATGNDASEMKNYINEIADKILSTYKSICL 1899
Query: 659 ADVLEKVKIKEWLEISPEPHMNYQM 683
+DV+ V + L + N QM
Sbjct: 1900 SDVIYGVGVDRKLILREPGAKNTQM 1924
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 80/143 (55%), Gaps = 7/143 (4%)
Query: 865 SKHLLKTDGINV----NFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 920
+++ L+ +G N+ N +Y +D KLY NDI+ + TYGIEA I +E+K VF
Sbjct: 2545 AEYELQIEGKNIYKLYNIKDKY---IDKTKLYCNDIYTIVKTYGIEAGRLCITKELKKVF 2601
Query: 921 AVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGR 980
YGI++D RHLS ++D+MTH+G + +R+G+ + KM+FE + Q +
Sbjct: 2602 EAYGIKIDFRHLSFISDFMTHTGDLKSFSRHGLGCFRNVFHKMSFECATNFLTQGCVHNS 2661
Query: 981 EDSLRAPSARVMLGQECRQGTGL 1003
D L S+ + G+ + GT +
Sbjct: 2662 VDYLSTASSSLFFGKPIKVGTNV 2684
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 76/154 (49%), Gaps = 12/154 (7%)
Query: 76 IRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR-HGELLSGILDKKQFGSTQYGLV 134
I T P I P LWTGKQ++++++ + D+V + + K G Y
Sbjct: 911 IVTEEPAILFPRRLWTGKQLITSILKTII--DQVAVETYNHRRDNHFMKNYKGINYYAKA 968
Query: 135 H---AVW------DTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSC 185
++W + V I++ ELL G+LDK FG++ VH ++ G + A +L C
Sbjct: 969 KTDPSLWSFDPKNECEVIIKNSELLQGVLDKLHFGASSNSFVHLCYELFGPKTAAVMLDC 1028
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKI 219
+LF +LQ G +L + D +++++ ++ KI
Sbjct: 1029 FGRLFISFLQLRGTSLSLYDFILKKDAREEKLKI 1062
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL-CI 71
++EA+ LMN + KDGSPL GL QD ++ G L+ +TFL EY NL+ AL C+
Sbjct: 776 RSEATHLMNSDFLFTSFKDGSPLRGLAQDFILGGLHLTSLETFLNYDEYCNLLQCALNCL 835
Query: 72 LN 73
L+
Sbjct: 836 LS 837
>gi|188532145|gb|ACD63084.1| RNA polymerase II largest subunit [Drimys winteri]
Length = 1010
Score = 237 bits (604), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 156/457 (34%), Positives = 233/457 (50%), Gaps = 51/457 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ G++QD ++ K++ RDTF+ + +MN++ +
Sbjct: 430 RAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL---MWWE 486
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + + P I KP PLWTGKQV + +I PK +IR S T+ G
Sbjct: 487 DFDGKVPAPAILKPRPLWTGKQVFNLII----PKQINLIRQSAWHS---------ETETG 533
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ DT V I GELL G L KK G++ L+H +W+ G + A L L
Sbjct: 534 FI-TPGDTQVRIERGELLCGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNY 592
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L + GF++G+ D + ++ I+KA+ E A L+ +P + E
Sbjct: 593 WLLQNGFSIGIGDTIADAATMDTISETISKAKNDVKELIMAAQDKALEAEP---GRTMTE 649
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNIN---QVCLPEGLIEPFPANNLQFMVESGAKGST 309
++ + + +L+K ++ Q L E +NNL+ MV +G+KGS
Sbjct: 650 SF----------ENRVNQVLNKARDDAGSSAQNSLSE-------SNNLKAMVTAGSKGSF 692
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q++ +GQ +EGKR GRTLP F + P + GFV+ ++ G+ PQEFFF
Sbjct: 693 INISQMTACVGQQNVEGKRIPYGFIGRTLPHFTKDDNGPESRGFVENSYLRGLTPQEFFF 752
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD- 428
H M GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +IQ LYGEDG+D
Sbjct: 753 HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDS 812
Query: 429 ----------VTKRQYLTDKQFSFLEDNIKWICSYKV 455
+ ++ D F + DN W SY V
Sbjct: 813 VWIESQKLDSLKMKKAEFDNVFRYEIDNDNWNPSYMV 849
>gi|16505|emb|CAA37130.1| RNA polymerase II [Arabidopsis thaliana]
Length = 1841
Score = 237 bits (604), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 155/452 (34%), Positives = 230/452 (50%), Gaps = 45/452 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ G++QD ++ K++ RDTF+ + +MN + +
Sbjct: 507 RAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNTL---MWWE 563
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + + P I KP PLWTGKQV + +I PK ++R+ T+ G
Sbjct: 564 DFDGKVPAPAILKPRPLWTGKQVFNLII----PKQINLLRYSAW---------HADTETG 610
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ DT V I GELL+G L KK G++ LVH +W+ G + A L L
Sbjct: 611 FITP-GDTQVRIERGELLAGTLCKKTLGTSNGSLVHVIWEEVGPDAARKFLGHTQWLVNY 669
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L + GFT+G+ D + K + I+ A+ + G LD +P +++
Sbjct: 670 WLLQNGFTIGIGDTIADSSTMEKINETISNAKTAVKDLIRQFQGKELDPEP---GRTMRD 726
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
F ++D+ D ++ Q L E NNL+ MV +G+KGS +N
Sbjct: 727 T------FENRVDQVLNKARDDAGSSA-QKSLAE-------TNNLKAMVTAGSKGSFINI 772
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q++ +GQ +EGKR GRTLP F + P + GFV+ ++ G+ PQEFFFH M
Sbjct: 773 SQMTACVGQQNVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 832
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVT-- 430
GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +IQ LYGEDG+D
Sbjct: 833 GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWI 892
Query: 431 KRQYLT---------DKQFSFLEDNIKWICSY 453
+ Q L D+ F + D+ W +Y
Sbjct: 893 ESQKLDSLKMKKSEFDRTFKYEIDDENWNPTY 924
Score = 138 bits (347), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 134/458 (29%), Positives = 217/458 (47%), Gaps = 63/458 (13%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
L SL PGE +G +AAQSIGEP+TQMTLNTFH+AG NVTLG+PRLREI+ +A K IK
Sbjct: 1069 LQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA-KRIK 1127
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCF 687
TPS+ + P+ K ++ A + ++ T+ V + ++ W + P + + F F
Sbjct: 1128 TPSLSVYLTPEASKSKEGAKTVQCALEYTTLRSVTQATEV--WYDPDPMSTI-IEEDFEF 1184
Query: 688 IPAHMYRDKTSVKPSKIIDHFERKFL-KELEVAIAKRAAQGLKNMNIEQSRDQMEDDV-- 744
+ ++ V P KI R L +E+ V A + +N+E +DD+
Sbjct: 1185 VRSYYEMPDEDVSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLE-----FDDDLTC 1239
Query: 745 --EDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSER 802
DD A + R+ + +DE E +Q E ED+ + +
Sbjct: 1240 IFNDD------NAQKLILRIRIMNDEGPKGE--LQD------------ESAEDDVFLKKI 1279
Query: 803 EEDDNTSNIGERFKIE-FRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNLFE 861
E SN+ + D VF+K V K +D++ F+
Sbjct: 1280 E-----SNMLTEMALRGIPDINKVFIKQ-------VRKSRFDEEGG------------FK 1315
Query: 862 EKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 921
E + +L T+G+N+ + + +D + N + + GIEA R ++ E++ V +
Sbjct: 1316 TSE-EWMLDTEGVNLLAVMCHED-VDPKRTTSNHLIEIIEVLGIEAVRRALLDELRVVIS 1373
Query: 922 VYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSF-IQKMTFEMPLEKIRQASMQGR 980
G V+ RHL+++ D MT+ G +A+ R+GI N + + + +FE ++ + A+
Sbjct: 1374 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAE 1433
Query: 981 EDSLRAPSARVMLGQECRQGTGLFQLR-NREKKKKKVE 1017
D LR + +MLGQ GTG +L N E K +E
Sbjct: 1434 TDCLRGVTENIMLGQLAPIGTGDCELYLNDEMLKNAIE 1471
>gi|397135896|gb|AFO11443.1| RNA polymerase I, partial [Schwanniomyces etchellsii]
Length = 872
Score = 237 bits (604), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 150/423 (35%), Positives = 224/423 (52%), Gaps = 39/423 (9%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
SH +AE S + V Q + P+ P+ G++QD + K++LRD+F+ + MN++Y
Sbjct: 307 SHETRAELSEICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDSFIEYDQVMNMLY-- 364
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGS 128
I N PP + +P PLWTGKQ+LS I PK + R + + +L K
Sbjct: 365 -WIPNWNGIIPPPAVVRPKPLWTGKQILSMAI----PKGIHLQRFDDG-TNLLSPK---- 414
Query: 129 TQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAK 188
D + I GE++ G++DKK G+T GL+H V G + L S + K
Sbjct: 415 ----------DNGMLIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPQVCAQLFSSIQK 464
Query: 189 LFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISS 248
+ +L GF++G+ D + E + T I +A+ + +A LD +P +
Sbjct: 465 VVNFWLLHNGFSIGIGDTIADPETMKDITITIQEAKDKVQQIILDAQLNKLDPEPGMT-- 522
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGS 308
L+E++ + + +V N + NN++ MV SG+KGS
Sbjct: 523 -LRESF--------------EHNVSRVLNQARDTAGRSAEMSLKDLNNVKQMVVSGSKGS 567
Query: 309 TVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFF 368
+N Q+S +GQ +EGKR S R+LP F + SP + GFV+ ++ G+ PQEFF
Sbjct: 568 FINISQMSACVGQQIVEGKRIPFGFSDRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFF 627
Query: 369 FHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
FH MAGREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S +IQ +YGEDG+D
Sbjct: 628 FHAMAGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFVYGEDGID 687
Query: 429 VTK 431
T+
Sbjct: 688 GTQ 690
>gi|16494|emb|CAA36735.1| DNA-directed RNA polymerase [Arabidopsis thaliana]
Length = 1860
Score = 237 bits (604), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 154/452 (34%), Positives = 228/452 (50%), Gaps = 45/452 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ G++QD ++ K++ RDTF+ + +MN + +
Sbjct: 533 RAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNTL---MWWE 589
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + + P I KP PLWTGKQV + +I PK ++R+ T+ G
Sbjct: 590 DFDGKVPAPAILKPRPLWTGKQVFNLII----PKQINLLRYSAW---------HADTETG 636
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ DT V I GELL+G L KK G++ LVH +W+ G + A L L
Sbjct: 637 FI-TPGDTQVRIERGELLAGTLCKKTLGTSNGSLVHVIWEEVGPDAARKFLGHTQWLVNY 695
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L + GFT+G+ D + K + I+ A+ + G LD +P
Sbjct: 696 WLLQNGFTIGIGDTIADSSTMEKINETISNAKTAVKDLIRQFQGKELDPEPGRT------ 749
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
R + + +L+K ++ + L E NNL+ MV +G+KGS +N
Sbjct: 750 -------MRDTFENRVNQVLNKARDDAGSSAQ-KSLAE---TNNLKAMVTAGSKGSFINI 798
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q++ +GQ +EGKR GRTLP F + P + GFV+ ++ G+ PQEFFFH M
Sbjct: 799 SQMTACVGQQNVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 858
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVT-- 430
GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +IQ LYGEDG+D
Sbjct: 859 GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWI 918
Query: 431 KRQYLT---------DKQFSFLEDNIKWICSY 453
+ Q L D+ F + D+ W +Y
Sbjct: 919 ESQKLDSLKMKKSEFDRTFKYEIDDENWNPTY 950
Score = 136 bits (342), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 133/458 (29%), Positives = 216/458 (47%), Gaps = 63/458 (13%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
L SL PGE +G + AQSIGEP+TQMTLNTFH+AG NVTLG+PRLREI+ +A K IK
Sbjct: 1095 LQSLVAPGEMIGCVPAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA-KRIK 1153
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCF 687
TPS+ + P+ K ++ A + ++ T+ V + ++ W + P + + F F
Sbjct: 1154 TPSLSVYLTPEASKSKEGAKTVQCALEYTTLRSVTQATEV--WYDPDPMSTI-IEEDFEF 1210
Query: 688 IPAHMYRDKTSVKPSKIIDHFERKFL-KELEVAIAKRAAQGLKNMNIEQSRDQMEDDV-- 744
+ ++ V P KI R L +E+ V A + +N+E +DD+
Sbjct: 1211 VRSYYEMPDEDVSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLE-----FDDDLTC 1265
Query: 745 --EDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSER 802
DD A + R+ + +DE E +Q E ED+ + +
Sbjct: 1266 IFNDD------NAQKLILRIRIMNDEGPKGE--LQD------------ESAEDDVFLKKI 1305
Query: 803 EEDDNTSNIGERFKIE-FRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNLFE 861
E SN+ + D VF+K V K +D++ F+
Sbjct: 1306 E-----SNMLTEMALRGIPDINKVFIKQ-------VRKSRFDEEGG------------FK 1341
Query: 862 EKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 921
E + +L T+G+N+ + + +D + N + + GIEA R ++ E++ V +
Sbjct: 1342 TSE-EWMLDTEGVNLLAVMCHED-VDPKRTTSNHLIEIIEVLGIEAVRRALLDELRVVIS 1399
Query: 922 VYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSF-IQKMTFEMPLEKIRQASMQGR 980
G V+ RHL+++ D MT+ G +A+ R+GI N + + + +FE ++ + A+
Sbjct: 1400 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAE 1459
Query: 981 EDSLRAPSARVMLGQECRQGTGLFQLR-NREKKKKKVE 1017
D LR + +MLGQ GTG +L N E K +E
Sbjct: 1460 TDCLRGVTENIMLGQLAPIGTGDCELYLNDEMLKNAIE 1497
>gi|188532147|gb|ACD63085.1| RNA polymerase II largest subunit [Illicium parviflorum]
Length = 1013
Score = 236 bits (603), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 156/458 (34%), Positives = 231/458 (50%), Gaps = 57/458 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ G++QD ++ K++ RDTF+ + +MN++ +
Sbjct: 433 RAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL---MWWE 489
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR----HGELLSGILDKKQFGS 128
+ + + P I KP PLWTGKQV + +I PK +IR H E +G +
Sbjct: 490 DFDGKIPAPAILKPRPLWTGKQVFNLII----PKQINLIRTSAWHSESETGFITPG---- 541
Query: 129 TQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAK 188
DTHV I GELLSG L KK G++ L+H +W+ G + A L
Sbjct: 542 ----------DTHVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQW 591
Query: 189 LFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISS 248
L +L + GF++G+ D + K + I+KA+ E A L+ +P
Sbjct: 592 LVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIKAAQEKQLEAEP----- 646
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGS 308
+ F ++++ D ++ Q L E +NNL+ MV +G+KGS
Sbjct: 647 ----GRTMMESFENRVNQVLNKARDDAGSSA-QKSLSE-------SNNLKAMVTAGSKGS 694
Query: 309 TVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFF 368
+N Q++ +GQ +EGKR RTLP F + P + GFV+ ++ G+ PQEFF
Sbjct: 695 FINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFF 754
Query: 369 FHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
FH M GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +IQ LYGEDG+D
Sbjct: 755 FHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 814
Query: 429 VT-------------KRQYLTDKQFSFLEDNIKWICSY 453
K+++ + F + DN W SY
Sbjct: 815 AVWIESQKLDSLKMKKKEF--ENVFRYEIDNDNWNPSY 850
>gi|397135888|gb|AFO11439.1| RNA polymerase I, partial [Priceomyces haplophilus]
Length = 867
Score = 236 bits (603), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 148/419 (35%), Positives = 222/419 (52%), Gaps = 39/419 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S + V Q + P+ P+ G++QD + K++LRD F+ + MN++Y I
Sbjct: 311 RAELSEICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIDYEQVMNMLY---WIP 367
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N + R P I KP PLWTGKQ+LS I PK + R + ++ +L K
Sbjct: 368 NWDGRIPSPAIIKPKPLWTGKQILSMAI----PKGIHLQRFDDGMN-LLSAK-------- 414
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
D + I GE++ G++DKK G+T GL+H V G + L + + K+
Sbjct: 415 ------DNGMLIIDGEIIFGVVDKKTVGATGGGLIHTVMREKGPKACAQLFNSIQKVVNY 468
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + + T I +A++ E +A LD +P + L+E
Sbjct: 469 WLLHNGFSIGIGDTIADASTMKDVTNTIQEAKKKVQEIILDAQQNRLDPEPGMT---LRE 525
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
++ + + +V N + NN++ MV SG+KGS +N
Sbjct: 526 SF--------------EHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINI 571
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EGKR S R+LP F SP + GFV+ ++ G+ PQEFFFH M
Sbjct: 572 SQMSACVGQQIVEGKRIPFGFSDRSLPHFTKDNYSPESKGFVENSYLRGLTPQEFFFHAM 631
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTK 431
AGREGLIDTAVKT+ +GY+QR ++K LE + VHYD T R+S +IQ LYGEDG+D T+
Sbjct: 632 AGREGLIDTAVKTAETGYIQRRIIKALEDIMVHYDGTTRNSLGDVIQFLYGEDGIDGTQ 690
>gi|3172136|gb|AAC18417.1| RNA polymerase II largest subunit [Acanthamoeba castellanii]
Length = 1569
Score = 236 bits (603), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 150/417 (35%), Positives = 215/417 (51%), Gaps = 41/417 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V Q + + P+ G++QD ++ G L+ RDTF+ + MN+ L L
Sbjct: 427 RAEVIELMMVPKQIVTAQSNKPVIGIVQDTLLGGCLLTQRDTFIEKDVMMNI----LMWL 482
Query: 73 NTEIRTLP-PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQY 131
+ T+P PTI KP LWTGKQV S +I R+ ++ ++ T
Sbjct: 483 ESWDGTVPTPTILKPKQLWTGKQVFSLIIP----------RNTNFVNADDEEPDMSFT-- 530
Query: 132 GLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFT 191
D V I GEL+SGIL+KK G++ LVH +W+ HG+E L+ + +
Sbjct: 531 -------DNKVLIEEGELVSGILNKKTLGTSHKSLVHVIWNEHGSEVCKHFLNQVQHVVN 583
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQ 251
+L GF++GV D + +E K T+ I KA+ E A L+ P
Sbjct: 584 YWLLHHGFSVGVGDTIADEETLAKITQTIRKAKDEVKERQLEAQQGQLERQP-------- 635
Query: 252 EAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVN 311
+ F I++ D N+ + +NN + MV +G+KGS +N
Sbjct: 636 -GRTMMESFEFVINQILNKARDDAGNSAQKSLRR--------SNNFKAMVIAGSKGSAIN 686
Query: 312 TMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHC 371
Q+ +GQ +EGKR RTLP F+ + P + GFV+ ++ G+ PQEFFFH
Sbjct: 687 ISQVLACVGQQNVEGKRIPFCFRDRTLPHFVKDDFGPESRGFVENSYLRGLTPQEFFFHA 746
Query: 372 MAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
M GREGLIDTAVKT+ +GY+QR LVK LE + V YD TVR+S +IQ LYGEDG+D
Sbjct: 747 MGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDYTVRNSLGDVIQFLYGEDGMD 803
Score = 149 bits (375), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 137/459 (29%), Positives = 219/459 (47%), Gaps = 65/459 (14%)
Query: 564 FYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMAT 623
FYK SL +PGE +G LAAQSIGEP+TQMTLNTFHFAG NVTLG+PRL+E++ +A
Sbjct: 983 FYK---SLCDPGEMIGALAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKELINIA- 1038
Query: 624 KAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQM 683
K IKTPS+ + P + + A + S+ T+ DV +I P+P
Sbjct: 1039 KTIKTPSLTVYLEPHCSRDHEAAKNVQCSLQHTTLRDVTAATEIF----YDPDP------ 1088
Query: 684 KFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDD 743
+ + D+ V+ +F + E E+ + + L+ IE +R++M D
Sbjct: 1089 ----VNTVITEDQDFVRA-----YF---LMPEEEINTSNLSPWLLR---IELNREKMT-D 1132
Query: 744 VEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSERE 803
+ E AE A G D++ D D + ++N +E+N + P+ E +
Sbjct: 1133 TKLSMQEIAERIHADFGG-DLNCIYNDDNADKLILRIRINNDEEN--KAPDQEGSVG--- 1186
Query: 804 EDDNT------SNIGERFKIE-FRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLP 856
DD+ SN+ ++ VF+++ N+ I + Y K N +
Sbjct: 1187 -DDDVFLKQIESNMLTEMDLKGIEGIKKVFIREDKNKVAIDARGEYTKANEL-------- 1237
Query: 857 SNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREV 916
+L T+G N+ + + +D + N+I GIEA ++RE+
Sbjct: 1238 -----------VLDTEGTNLLAVMSHPD-VDHTRTTSNNIIETIEVLGIEAVRNALLREL 1285
Query: 917 KNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQA 975
+NV + G V+ RHL+++AD MT+ G +A+ R+GI R+ + + +FE + + +A
Sbjct: 1286 RNVISFDGAYVNYRHLAILADVMTYRGHLMAITRHGINRVETGCLMRCSFEETADILLEA 1345
Query: 976 SMQGREDSLRAPSARVMLGQECRQGTGLFQLRNREKKKK 1014
+ D L S ++LGQ GTG F L E K K
Sbjct: 1346 ATFSELDPLSGVSENILLGQLPPLGTGCFDLFLNESKLK 1384
>gi|397135906|gb|AFO11448.1| RNA polymerase I, partial [Yamadazyma philogaea]
Length = 865
Score = 236 bits (602), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 149/423 (35%), Positives = 218/423 (51%), Gaps = 41/423 (9%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S +AE S + V Q + P+ P+ G++QD + K++LRD F+ + MN++Y
Sbjct: 307 SQETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDNFIELDQVMNMLY-- 364
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGS 128
I + PP + KP PLWTGKQ+LS I PK I L S +L K
Sbjct: 365 -WIPTWDGVIPPPAVMKPKPLWTGKQLLSIAI----PKG---IHLQRLESSLLSPK---- 412
Query: 129 TQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAK 188
D + I GE++ G++DKK GST GL+H V+ + L S + K
Sbjct: 413 ----------DNGMLIVDGEIMFGVVDKKTVGSTGGGLIHTVFREKSPQVCAQLFSNIQK 462
Query: 189 LFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISS 248
+ +L GF++G+ D + E + T I +A+ + NA L+
Sbjct: 463 VVNFWLLHNGFSIGIGDTIADSETMKVVTTTIEEAKSKVQDIIMNAQRDKLE-------- 514
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGS 308
P+ + +++ + +V N + NN++ MV SG+KGS
Sbjct: 515 ---------PEAGMTLRETFENNVSRVLNQARDTAGRSAEMSLKDLNNVKQMVTSGSKGS 565
Query: 309 TVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFF 368
+N Q+S +GQ +EGKR + RTLP F + SP + GFV+ ++ G+ PQEFF
Sbjct: 566 FINISQMSACVGQQIVEGKRIPFGFADRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFF 625
Query: 369 FHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
FH MAGREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S ++Q LYGEDG+D
Sbjct: 626 FHAMAGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIVQFLYGEDGMD 685
Query: 429 VTK 431
T+
Sbjct: 686 GTQ 688
>gi|310799174|gb|EFQ34067.1| RNA polymerase Rpb1 [Glomerella graminicola M1.001]
Length = 1342
Score = 236 bits (602), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 205/701 (29%), Positives = 319/701 (45%), Gaps = 99/701 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V PK+G P+ QD + + LS +D F R + Y + ++
Sbjct: 413 RAEAINLMGVKHNLATPKNGEPVIAATQDFITAAYLLSSKDNFFDRKTF---TYICMHMM 469
Query: 73 NTEIRT--LPPTIWKPMPLWTGKQVL---------STVIINLTPKDKVI-IRHGELLSGI 120
+ ++ PP + KP LWTGKQV S V INL K + R G+
Sbjct: 470 DGKVHLDLPPPAVLKPKALWTGKQVFNMMMRPNKESPVKINLDAKCREYKARAGQCPD-- 527
Query: 121 LDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLV-HAVWDTHGAEHA 179
+D + D + IR+ E++ G++DK G + V + + G + A
Sbjct: 528 MDPE--------------DAWLVIRNSEVMCGVMDKSTVGDGKKDSVFYVILRDFGPDAA 573
Query: 180 ISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPL 239
++ ++ LAKL +L GF++G+ D+ ++ K++ ++ A +L + +
Sbjct: 574 VATMNRLAKLCARHLTNRGFSIGIGDVFPTEKLLEKKSTLVKTA----------SLEVDV 623
Query: 240 DTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQF 299
D + ++L++A ++ LL KV C IE NN
Sbjct: 624 LID-KYKKNKLEKATGC--SMEQTLENSISGLLSKVRTQAGAHC-----IETLSKNNAPL 675
Query: 300 -MVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRF 358
M + G+KGS +N Q+ L+GQ + GKR A RTLP F P + GFV+ F
Sbjct: 676 VMAKCGSKGSNINVAQMVALVGQQIIGGKRVADGFQDRTLPHFHKNAPQPPSKGFVENSF 735
Query: 359 MTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLI 418
+G+ P EF FH M+GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR S ++
Sbjct: 736 YSGLLPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDDTVRTSGGGIV 795
Query: 419 QVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSS 478
Q +G D LD D + S N S+ L + P L ++ S
Sbjct: 796 QFQFGADKLDPV------DMEASAKPVNFDRTFSHAENLTWNNEEPALLPDEIVRYCDS- 848
Query: 479 GKPNFIFSPHRTKFTMDLLEQWYQLD-DKARKKYRKKFKACPQPLISTFQPDAHFGSISE 537
+ S R ++ L LD D ++Y + + L S +++ G+ ++
Sbjct: 849 -----MLSRERARYPRKSLLGDLTLDYDNEEERYTDEHEGARDFLRSL---ESYVGARAQ 900
Query: 538 NL------------ADSV---VKYTKGRTDASHVDK-----------FYDMIFYKNLLSL 571
L ADS+ V + R ++ +K F + K +
Sbjct: 901 KLRRLMELTGLTADADSMDVDVDQEEMRHKKAYAEKVAKVSETTLRLFIKLCLEKYKKAH 960
Query: 572 ANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSM 631
PG VG + AQSIGEP TQMTL TFHFAG M++T G+PR++EI+ A+K I TP +
Sbjct: 961 VEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEII-NASKVISTPVI 1019
Query: 632 EIPFLPDMPKLEKKANRLAKSMTRITMA-DVLEKVKIKEWL 671
P + + E A R+ K+ T D+L ++ EW
Sbjct: 1020 TCPLVQNR---ELTAARIVKARIEKTFVEDILSYIE-DEWF 1056
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 64/125 (51%), Gaps = 3/125 (2%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D ++ N++ GIEAA I E+ V + +DPRH+ L+AD MT+ G
Sbjct: 1187 VDGRRVKTNNVMECRDVLGIEAARSTIAYEIGEVMG--DMNIDPRHMQLLADVMTYKGEV 1244
Query: 946 VAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
+ + R G+ ++ S +Q +FE + + +A+ + D + S +++GQ GTG F
Sbjct: 1245 LGITRFGLSKMRDSVLQLASFEKTPDHLFEAAAGMKTDQIEGVSECIIMGQTMTVGTGAF 1304
Query: 1005 QLRNR 1009
+ R
Sbjct: 1305 HVVRR 1309
>gi|397135822|gb|AFO11406.1| RNA polymerase I, partial [Ascoidea rubescens]
Length = 872
Score = 236 bits (602), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 152/425 (35%), Positives = 226/425 (53%), Gaps = 51/425 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L+ V Q + P+ P+ G++QD + K++LRD F+ + M + Y +
Sbjct: 311 RAELQNLVAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIEYDQVMQICY---WVK 367
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ PP I KP PLWTGKQ+LS I P+ ++R E K S
Sbjct: 368 DWNGIMPPPAILKPKPLWTGKQLLSLAI----PEGIHLLRFDE-------KTTLLSPN-- 414
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
D + I +GE++ GI++KK G+T GL+H V G++ L + K+
Sbjct: 415 ------DDGMLIINGEIMFGIVNKKTVGATNGGLIHTVMREKGSKACADLFGNIQKIVNY 468
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + + +K T I +A++ + +A L+ +P + L+E
Sbjct: 469 WLLHNGFSIGIGDTIADADTMKKITTTIAEAKQKVQDLILDAQANRLELEPGMT---LRE 525
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQV------CLPEGLIEPFPANNLQFMVESGAK 306
++ S KV+ +NQ C L E NN++ MV SG+K
Sbjct: 526 SFES-----------------KVSRVLNQARDDAGHCAQMNLKE---LNNVKQMVVSGSK 565
Query: 307 GSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQE 366
GS +N Q+S +GQ +EGKR + RTLP F + SP + GFV+ ++ G+ PQE
Sbjct: 566 GSFINISQMSACVGQQIVEGKRIPFGFADRTLPHFTKDDFSPESKGFVENSYLRGLTPQE 625
Query: 367 FFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDG 426
FFFH MAGREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S ++IQ +YGEDG
Sbjct: 626 FFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSVGAIIQFIYGEDG 685
Query: 427 LDVTK 431
LD T+
Sbjct: 686 LDATQ 690
>gi|430812931|emb|CCJ29676.1| unnamed protein product [Pneumocystis jirovecii]
Length = 1762
Score = 236 bits (601), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 152/422 (36%), Positives = 226/422 (53%), Gaps = 39/422 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE + V Q + P+ P+ G++QD + KL+ RD FL++ + MN++ L +
Sbjct: 502 RAEIIEICMVPKQIVSPQSNKPVMGIVQDTLAGVKKLTRRDNFLSKDQVMNIL---LWVP 558
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ PP I KP +WTGKQ+LS VI PK IR D+KQ T
Sbjct: 559 EWDGNMPPPAIIKPKAMWTGKQILSMVI----PKGINFIRD--------DEKQTPMTPD- 605
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
DT + + +GE++ GI+DKK G++Q GLVH + G E + + +
Sbjct: 606 ------DTGMMLENGEIIYGIVDKKTVGASQGGLVHTIMREKGPEVCRVFFNGIQMVVNY 659
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + R T I +A+ E +A L +P + L+E
Sbjct: 660 WLLHNGFSIGIGDTIADANTMRDITNTIAEAKAKVQEIILDAQQNRLQVEPGMT---LRE 716
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
+ F +++ R D + Q+ L + +NN++ MV +G+KGS +N
Sbjct: 717 S------FESKVSRALNQARDTAGRSA-QMSLKD-------SNNVKQMVTAGSKGSFINI 762
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EGKR RTLP F + SP +GGF++ ++ G+ PQEFFFH M
Sbjct: 763 SQMSACVGQQIVEGKRIPYGFKYRTLPHFTKDDYSPESGGFIENSYLRGLTPQEFFFHAM 822
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKR 432
AGREGLIDTAVKT+ +GY+QR LVK LE + V YD TVR+S +IQ++YGEDGLD
Sbjct: 823 AGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDIIQLVYGEDGLDGVSV 882
Query: 433 QY 434
+Y
Sbjct: 883 EY 884
Score = 99.4 bits (246), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 51/98 (52%), Positives = 69/98 (70%), Gaps = 1/98 (1%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
S+ANPGE VG LAAQSIGEP+TQMTLNTFH+AG ++TLG+PRL+EIL +A K IKTP
Sbjct: 1061 SVANPGEMVGTLAAQSIGEPATQMTLNTFHYAGVSSKSITLGVPRLKEILNVA-KTIKTP 1119
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKI 667
S+ I P++ K + A ++ ++ T+ V +I
Sbjct: 1120 SLTIYLTPEVSKDMESAKQVQTAIEHTTLKTVTSVTEI 1157
>gi|68300797|gb|AAY89341.1| RNA polymerase II largest subunit [Rhododendron macrophyllum]
Length = 589
Score = 236 bits (601), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 153/452 (33%), Positives = 233/452 (51%), Gaps = 45/452 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ G++QD ++ K++ RDTF+ + +MN++ +
Sbjct: 20 RAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL---MWWE 76
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + + P I KP PLWTGKQV + +I PK ++R S + + G G
Sbjct: 77 DFDGKIPAPAILKPKPLWTGKQVFNLII----PKQINLLR----TSAWHAESETGPITPG 128
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
DTHV I GE+++G L KK G++ L+H +W+ G + A L +L
Sbjct: 129 ------DTHVRIEKGEVITGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQRLVNY 182
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L + GF++G+ D + K + I+KA+ + A L+ +P
Sbjct: 183 WLLQSGFSIGIGDTIADAATMEKINETISKAKNEVKDLIRAAQDKQLEAEP--------- 233
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
+ F ++++ D ++ Q L E +NNL+ MV +G+KGS +N
Sbjct: 234 GRTMMESFENRVNQVLNKARDDAGSSA-QKSLAE-------SNNLKAMVTAGSKGSFINI 285
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q++ +GQ +EGKR RTLP F + P + GFV+ ++ G+ PQEFFFH M
Sbjct: 286 SQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 345
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVT-- 430
GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +IQ LYGEDG+D
Sbjct: 346 GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWI 405
Query: 431 KRQYLT---------DKQFSFLEDNIKWICSY 453
+ Q L DK+F + D+ W SY
Sbjct: 406 ETQRLDSLKMKKSEFDKKFRYEIDDGNWNPSY 437
>gi|397135882|gb|AFO11436.1| RNA polymerase I, partial [Spathaspora passalidarum]
Length = 872
Score = 236 bits (601), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 149/419 (35%), Positives = 221/419 (52%), Gaps = 39/419 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S + V Q + P+ P+ G++QD + K++LRDT++ + MN+ Y I
Sbjct: 311 RAELSQICAVPLQIISPQSNKPVMGIVQDTLCGIRKMTLRDTYIEFDQVMNMCY---WIP 367
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N + PP I KP PLWTGKQ+LS I PK H + G D
Sbjct: 368 NWDGVIPPPAIVKPKPLWTGKQLLSMAI----PKGI----HLQRFDGGRD---------- 409
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ + DT + I GE++ G++DKK G+T GL+H V G + L S + K+
Sbjct: 410 -LLSAKDTGMLIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPQVCAQLFSSIQKVVNY 468
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + + T I +A+ E +A L+ +P + L+E
Sbjct: 469 WLLHNGFSIGIGDTIADASTMKDITTTIQEAKTKVQEIILDAQQNRLEPEPGMT---LRE 525
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
++ + + +V N + NN++ MV SG+KGS +N
Sbjct: 526 SF--------------EHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVTSGSKGSFINI 571
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EGKR + R+LP F + SP + GFV+ ++ G+ PQEFFFH M
Sbjct: 572 SQMSACVGQQIVEGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAM 631
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTK 431
AGREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S +IQ +YGEDG+D T+
Sbjct: 632 AGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFIYGEDGIDGTQ 690
>gi|259487939|tpe|CBF87003.1| TPA: hypothetical protein similar to RNA polymerase III (Broad)
[Aspergillus nidulans FGSC A4]
Length = 1445
Score = 236 bits (601), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 198/690 (28%), Positives = 320/690 (46%), Gaps = 100/690 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + PK+G P+ G IQD + + LS +D F R + + L +L
Sbjct: 530 RAEAMELMGVKNNLATPKNGEPIIGAIQDFISAAYLLSSKDNFFDRRSFTQI---CLYML 586
Query: 73 NTEIR--TLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDK--KQFGS 128
+ R PP ++KP LWTGKQV + +++ D V++ LD KQF
Sbjct: 587 GPQTRFDLPPPAVFKPQMLWTGKQVFN-ILMRPNKDDPVLVN--------LDAACKQFKP 637
Query: 129 TQYGLVHAV--WDTHVTIRHGELLSGILDKKQFGSTQY-GLVHAVWDTHGAEHAISLLSC 185
+ + D+ + +R+ E++ G++DK GS + + + + G A ++
Sbjct: 638 PKGNQPRDLDPNDSWLVVRNSEVMCGVMDKSTVGSGKKDNVFYIMLRDFGPAAAAEGMNR 697
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEI 245
L+KL + +GF++G+ D+ + + ++ A A C+ E+
Sbjct: 698 LSKLSARWFSNMGFSIGITDVYPSDRLVQSKNDLVEAAY-----AQCD----------EV 742
Query: 246 IS---SQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
I+ + E Y + + ++ Q +L KV C+ + + + N+ M
Sbjct: 743 IAKYKAGTLEKYPGCDELQT-MENQLSGILSKVRQQAGDECIAQ--LSKY--NSPLIMAT 797
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
SG+KGS++N Q+ L+GQ + G+R RTLP F P + GFV F +G+
Sbjct: 798 SGSKGSSINVSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNARQPPSKGFVRNSFFSGL 857
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
P EF FH M+GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR+S ++Q Y
Sbjct: 858 LPYEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSTGYDDTVRNSSQGIVQFQY 917
Query: 423 GEDGLDVT-----------KRQYL-------TDKQFSFLEDNIKWICSYKVILNL--LKK 462
G+D LD R ++ +++ S I +C + L +
Sbjct: 918 GDDKLDPVDMEGKAKPVHFDRTFIHAETTTYKNEERSLSPAEIMEVCEEMLSKERAKLAR 977
Query: 463 HPLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPL 522
+ L A L + G F + +D ++Q+ Q KA K + + P
Sbjct: 978 YDLMGAELDYMDRSDHGVDQF----ESARDFLDSIQQYVQT--KADKLISRGGDSDPSDE 1031
Query: 523 ISTFQPDAHFGSISEN-----LADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGEN 577
T + H G ++E +A+ ++KY K + + PG
Sbjct: 1032 -RTIKGLNHTGKLTERTLRTFIAECLMKYKKAQVE---------------------PGHA 1069
Query: 578 VGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLP 637
VG + AQSIGEP TQMTL TFHFAG M++T G+PR++EI+ A+K I TP + +
Sbjct: 1070 VGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEII-NASKEISTPVISCELV- 1127
Query: 638 DMPKLEKKANRLAKSMTRIT-MADVLEKVK 666
K A R+AK T + D++ V+
Sbjct: 1128 --EKRNIVAARMAKGRIEKTFLRDIIHYVR 1155
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 61/114 (53%), Gaps = 3/114 (2%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N++ GIEAA II+E+ V +++DPRH+ L+AD MT+ G + + R G+
Sbjct: 1298 NNVMETREVLGIEAARSTIIQEISEVMK--DMDIDPRHMQLLADVMTYKGEVLGITRFGL 1355
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
++ S +Q +FE + + A GR D + S +++G+ GTG ++
Sbjct: 1356 AKMRDSVLQLASFEKTADHLFDAGGAGRTDLIEGVSECIIMGKTVSLGTGAMEV 1409
>gi|281203888|gb|EFA78084.1| RNA polymerase II largest subunit [Polysphondylium pallidum PN500]
Length = 2159
Score = 235 bits (600), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 153/443 (34%), Positives = 227/443 (51%), Gaps = 38/443 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE +M V Q + P+ P+ G++QD ++ K + RDTF+ R MN++ + +
Sbjct: 504 RAEIIEIMMVPRQIVSPQSNRPVMGIVQDTLLGSMKFTKRDTFVERDLMMNIL---MWLP 560
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + + PP IWKP LWTGKQ+ S +I N+ + R G S DK++ S
Sbjct: 561 SWDGKIPPPAIWKPKKLWTGKQLFSLIIPNIN-----LQRFGSTHS---DKEKEKSEMAA 612
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
DT V I GELL+GIL K+ G+ ++H V + HG + + +
Sbjct: 613 ------DTVVIIDQGELLTGILCKRSLGAANGSIIHVVMNEHGHDSCRLFIDQTQTVVNH 666
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GFT+G+ D + K T I A+ E A + P
Sbjct: 667 WLINHGFTVGIGDTIADAATMSKVTSAIANAKTQVKELIIKAQSNQFECQP--------- 717
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
+ + F +++R + D + Q L E +NN++ MV +G+KGS +N
Sbjct: 718 GRSMLESFEKEVNRVLNTARDDAGTSA-QRSLQE-------SNNVKAMVNAGSKGSFINI 769
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+ +GQ +EGKR RTLP F + P + GFV+ ++ G+ PQEFFFH M
Sbjct: 770 SQMMACVGQQNVEGKRVPFGFQNRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 829
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKR 432
GREGLIDTAVKTS +GY+QR LVK +E ++V YD TVR+S +IQ YGEDGLD
Sbjct: 830 GGREGLIDTAVKTSETGYIQRRLVKAMEDVSVKYDATVRNSLGDVIQFAYGEDGLDSC-- 887
Query: 433 QYLTDKQFSFLE-DNIKWICSYK 454
++ ++ F L+ DN +I YK
Sbjct: 888 -FVENQMFDSLKRDNQDFIKLYK 909
Score = 103 bits (258), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/81 (64%), Positives = 62/81 (76%), Gaps = 1/81 (1%)
Query: 566 KNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKA 625
K LLS+ NPGE VG LAAQSIGEP+TQMTLNTFH+AG NVTLG+PRL+EI+ +A K
Sbjct: 1073 KFLLSIVNPGEMVGALAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINIA-KT 1131
Query: 626 IKTPSMEIPFLPDMPKLEKKA 646
+KTPS+ I PD K +KA
Sbjct: 1132 VKTPSLTIYLQPDAAKDSEKA 1152
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 85/148 (57%), Gaps = 4/148 (2%)
Query: 860 FEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNV 919
F +KE +L TDG+N+ + + + D ++ NDI + GIEA +++E++ V
Sbjct: 1318 FSKKE--WVLDTDGVNLLEVMSHPDV-DHSRTVSNDIIEIIQVLGIEAVRNALLKELRAV 1374
Query: 920 FAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQ 978
+ G V+ RHL+++AD MT+ G +A++R+GI R+ + + +FE +E + A+M
Sbjct: 1375 ISFDGSYVNYRHLAILADVMTYRGHLMAISRHGINRVESGPLMRCSFEETVEILMDAAMF 1434
Query: 979 GREDSLRAPSARVMLGQECRQGTGLFQL 1006
D ++ + ++LGQ GTG F++
Sbjct: 1435 SETDDVKGVTENIILGQLPPLGTGSFEV 1462
>gi|403223272|dbj|BAM41403.1| DNA-directed RNA polymerase [Theileria orientalis strain Shintoku]
Length = 1645
Score = 235 bits (600), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 150/443 (33%), Positives = 233/443 (52%), Gaps = 46/443 (10%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
SH +AE LM V Q + P+ P+ G++QD +++ +K + RDTFLTR E M+L+
Sbjct: 495 SHETRAEVKHLMLVPKQIVSPQGNRPVMGIVQDSLLAVSKFTKRDTFLTRDELMSLL--- 551
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKV----IIRHGELLSGILDKK 124
+ I + + P I+ P LWTGKQV+S V++ + +IR G + L+K
Sbjct: 552 IWIPYWDGKLPQPAIFFPKNLWTGKQVIS-VLLTFNQAQGITNINLIRDGSIK---LEKD 607
Query: 125 QFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLS 184
+V D+ V IR E LSGI+ KK G + L+H +W G E L+
Sbjct: 608 NLNC-------SVNDSRVIIRKNEHLSGIICKKTVGCSSGSLIHILWHEAGPEKCRDFLT 660
Query: 185 CLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPE 244
L K+ + +VGFT+ DI K +KI++K+++ + A L P
Sbjct: 661 TLQKVVNNWFLQVGFTVSCSDICCSTTTLNKVSKILDKSKKEVQKLVLQAQKGKLKCQP- 719
Query: 245 IISSQLQEAYASIPQFRAQIDRQYKSLLDK----VTNNINQVCLPEGLIEPFPANNLQFM 300
L E+ F A+++++ ++ V +++N +NN+ M
Sbjct: 720 --GKSLFES------FEARVNKELNDAREQSGSVVASSLNI------------SNNILSM 759
Query: 301 VESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMT 360
V SG+KGST+N QI +GQ +EGKR R+LP F+ ++ P + GFV +++
Sbjct: 760 VNSGSKGSTINISQIIACVGQQNVEGKRIPFGFKDRSLPHFIKHDYGPESRGFVSNSYLS 819
Query: 361 GIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQV 420
G+ PQE FFH M GREG+IDTA KTS +GY+QR L+K +E + V YD T R+ + ++Q
Sbjct: 820 GLTPQEMFFHAMGGREGIIDTACKTSETGYVQRRLMKAMEDVMVQYDRTARNGNGEILQF 879
Query: 421 LYGEDGLDVTKRQYLTDKQFSFL 443
LYGEDG+ +Y+ D+Q +
Sbjct: 880 LYGEDGMGA---EYIEDQQIDLM 899
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 69/104 (66%), Gaps = 4/104 (3%)
Query: 564 FYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMAT 623
F+K ++ANPGE VG +AAQSIGEP+TQMTLNTFHFAG NVTLG+PRL+E++ + T
Sbjct: 1071 FFK---AIANPGECVGAIAAQSIGEPATQMTLNTFHFAGVSSKNVTLGLPRLKELINVVT 1127
Query: 624 KAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKI 667
++TPS+ I ++ K +++A + + ++E +
Sbjct: 1128 N-VRTPSLTIYLDANISKDQERAKEMQTQLEYTNFERLVENYSV 1170
Score = 83.2 bits (204), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 84/152 (55%), Gaps = 2/152 (1%)
Query: 862 EKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 921
++ S+ +L TDG N+ + ++ K + ND+ + + +GIEAA R ++RE++ V +
Sbjct: 1254 DRVSQWVLDTDGCNLENVLPI-PCVEYTKTFSNDVSEIFNVFGIEAARRALLREIRAVIS 1312
Query: 922 VYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGR 980
G V+ RHLSL+ D MT G +++ R+G+ R + + K +FE LE + A+
Sbjct: 1313 FDGAYVNYRHLSLLCDIMTQKGYLMSITRHGLNRADRGPLVKCSFEETLETLLSAAAFSE 1372
Query: 981 EDSLRAPSARVMLGQECRQGTGLFQLRNREKK 1012
D LR + V++GQ GTG F + E K
Sbjct: 1373 VDPLRGVTENVVVGQLSPYGTGCFDIMIDELK 1404
>gi|83320426|gb|ABC02840.1| RNA polymerase II largest subunit, partial [Hyaloraphidium
curvatum]
Length = 1002
Score = 235 bits (600), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 147/425 (34%), Positives = 221/425 (52%), Gaps = 40/425 (9%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S+ +AE +M V Q + P+ P+ G++QD K +LRD +TR MN+
Sbjct: 417 SYETRAEIKEIMMVPRQIISPQANKPVMGIVQDTFCGIRKFTLRDNMMTRDMVMNI---C 473
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVI---INLTPKDKVIIRHGELLSGILDKKQ 125
+ I + + + PP I KP PLWTGKQ++S VI IN+T K H D
Sbjct: 474 MWIPDWDGQPPPPAILKPQPLWTGKQLMSMVIPSRINVTGK------HSTHPDDERDNIS 527
Query: 126 FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSC 185
G DT V I G +L+GIL K+ G++ G++H + + +G E A +
Sbjct: 528 PG-----------DTQVVIEDGVVLAGILSKRTVGNSAGGIIHVIMNEYGPEMAKKFFNG 576
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEI 245
++ +L + GF++G+ D + + + +I+ +A+ E A
Sbjct: 577 TQRVVNYWLLQNGFSIGIGDTVADKATMHQINQILKRAKEDVGETIARAQ---------- 626
Query: 246 ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGA 305
+QL+ PQ I ++S+++K+ N + P NN + MV++G+
Sbjct: 627 -QNQLE------PQPGMTIRETFESVVNKILNKAREDAGKAATKSLAPFNNAKQMVDAGS 679
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS +N Q++ +GQ +EGKR RTLP F + SP + GFV+ ++ G+ PQ
Sbjct: 680 KGSEINISQMAACVGQQNVEGKRIPFGFRLRTLPHFTKDDQSPESRGFVENSYLRGLTPQ 739
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EFFFH M GREGLIDTAVKT+ +GY+QR LVK LE + V YD TVR+S +IQ YGED
Sbjct: 740 EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGHVIQFAYGED 799
Query: 426 GLDVT 430
G+D
Sbjct: 800 GMDAV 804
>gi|67524109|ref|XP_660116.1| hypothetical protein AN2512.2 [Aspergillus nidulans FGSC A4]
gi|40744841|gb|EAA63997.1| hypothetical protein AN2512.2 [Aspergillus nidulans FGSC A4]
Length = 2092
Score = 235 bits (600), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 198/690 (28%), Positives = 320/690 (46%), Gaps = 100/690 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + PK+G P+ G IQD + + LS +D F R + + L +L
Sbjct: 1177 RAEAMELMGVKNNLATPKNGEPIIGAIQDFISAAYLLSSKDNFFDRRSFTQI---CLYML 1233
Query: 73 NTEIR--TLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDK--KQFGS 128
+ R PP ++KP LWTGKQV + +++ D V++ LD KQF
Sbjct: 1234 GPQTRFDLPPPAVFKPQMLWTGKQVFN-ILMRPNKDDPVLVN--------LDAACKQFKP 1284
Query: 129 TQYGLVHAV--WDTHVTIRHGELLSGILDKKQFGSTQY-GLVHAVWDTHGAEHAISLLSC 185
+ + D+ + +R+ E++ G++DK GS + + + + G A ++
Sbjct: 1285 PKGNQPRDLDPNDSWLVVRNSEVMCGVMDKSTVGSGKKDNVFYIMLRDFGPAAAAEGMNR 1344
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEI 245
L+KL + +GF++G+ D+ + + ++ A A C+ E+
Sbjct: 1345 LSKLSARWFSNMGFSIGITDVYPSDRLVQSKNDLVEAAY-----AQCD----------EV 1389
Query: 246 IS---SQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
I+ + E Y + + ++ Q +L KV C+ + + + N+ M
Sbjct: 1390 IAKYKAGTLEKYPGCDELQT-MENQLSGILSKVRQQAGDECIAQ--LSKY--NSPLIMAT 1444
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
SG+KGS++N Q+ L+GQ + G+R RTLP F P + GFV F +G+
Sbjct: 1445 SGSKGSSINVSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNARQPPSKGFVRNSFFSGL 1504
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
P EF FH M+GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR+S ++Q Y
Sbjct: 1505 LPYEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSTGYDDTVRNSSQGIVQFQY 1564
Query: 423 GEDGLDVT-----------KRQYL-------TDKQFSFLEDNIKWICSYKVILNL--LKK 462
G+D LD R ++ +++ S I +C + L +
Sbjct: 1565 GDDKLDPVDMEGKAKPVHFDRTFIHAETTTYKNEERSLSPAEIMEVCEEMLSKERAKLAR 1624
Query: 463 HPLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPL 522
+ L A L + G F + +D ++Q+ Q KA K + + P
Sbjct: 1625 YDLMGAELDYMDRSDHGVDQF----ESARDFLDSIQQYVQT--KADKLISRGGDSDPSDE 1678
Query: 523 ISTFQPDAHFGSISEN-----LADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGEN 577
T + H G ++E +A+ ++KY K + + PG
Sbjct: 1679 -RTIKGLNHTGKLTERTLRTFIAECLMKYKKAQVE---------------------PGHA 1716
Query: 578 VGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLP 637
VG + AQSIGEP TQMTL TFHFAG M++T G+PR++EI+ A+K I TP + +
Sbjct: 1717 VGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEII-NASKEISTPVISCELV- 1774
Query: 638 DMPKLEKKANRLAKSMTRIT-MADVLEKVK 666
K A R+AK T + D++ V+
Sbjct: 1775 --EKRNIVAARMAKGRIEKTFLRDIIHYVR 1802
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 61/114 (53%), Gaps = 3/114 (2%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N++ GIEAA II+E+ V +++DPRH+ L+AD MT+ G + + R G+
Sbjct: 1945 NNVMETREVLGIEAARSTIIQEISEVMK--DMDIDPRHMQLLADVMTYKGEVLGITRFGL 2002
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
++ S +Q +FE + + A GR D + S +++G+ GTG ++
Sbjct: 2003 AKMRDSVLQLASFEKTADHLFDAGGAGRTDLIEGVSECIIMGKTVSLGTGAMEV 2056
>gi|344303415|gb|EGW33664.1| hypothetical protein SPAPADRAFT_134208 [Spathaspora passalidarum
NRRL Y-27907]
Length = 1748
Score = 235 bits (599), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 149/419 (35%), Positives = 221/419 (52%), Gaps = 39/419 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S + V Q + P+ P+ G++QD + K++LRDT++ + MN+ Y I
Sbjct: 506 RAELSQICAVPLQIISPQSNKPVMGIVQDTLCGIRKMTLRDTYIEFDQVMNMCY---WIP 562
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N + PP I KP PLWTGKQ+LS I PK H + G D
Sbjct: 563 NWDGVIPPPAIVKPKPLWTGKQLLSMAI----PKGI----HLQRFDGGRD---------- 604
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ + DT + I GE++ G++DKK G+T GL+H V G + L S + K+
Sbjct: 605 -LLSAKDTGMLIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPQVCAQLFSSIQKVVNY 663
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + + T I +A+ E +A L+ +P + L+E
Sbjct: 664 WLLHNGFSIGIGDTIADASTMKDITTTIQEAKTKVQEIILDAQQNRLEPEPGMT---LRE 720
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
++ + + +V N + NN++ MV SG+KGS +N
Sbjct: 721 SF--------------EHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVTSGSKGSFINI 766
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EGKR + R+LP F + SP + GFV+ ++ G+ PQEFFFH M
Sbjct: 767 SQMSACVGQQIVEGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAM 826
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTK 431
AGREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S +IQ +YGEDG+D T+
Sbjct: 827 AGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFIYGEDGIDGTQ 885
Score = 96.7 bits (239), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 69/98 (70%), Gaps = 1/98 (1%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
S+ +PGE VGV+AAQSIGEP+TQMTLNTFH+AG NVTLG+PRL+EIL +A K IKTP
Sbjct: 1065 SIVHPGEMVGVVAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVA-KNIKTP 1123
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKI 667
++ + P++ +KA + ++ T+ +V +I
Sbjct: 1124 ALTVYLDPEIAADIEKAKVVQSAIEHTTLKNVTSSTEI 1161
Score = 80.9 bits (198), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 81/153 (52%), Gaps = 3/153 (1%)
Query: 856 PSNLFEEKESKH-LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIR 914
P E K+ K +L+TDG+N+ + + D ++ Y ND + S GIEA + +
Sbjct: 1302 PDETGEFKQGKEWVLETDGVNLADVMAVPGV-DSSRTYSNDFIEILSVLGIEATRTALFK 1360
Query: 915 EVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIR 973
E+ NV A G V+ RH++L+ D MT G +A+ R+GI R + + + +FE +E +
Sbjct: 1361 EILNVIAFDGSYVNYRHMALLVDVMTSRGHLMAITRHGINRADTGALMRCSFEETVEILL 1420
Query: 974 QASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+A+ D R S VMLGQ GTG F +
Sbjct: 1421 EAAASAELDDCRGISENVMLGQMAPLGTGSFDV 1453
>gi|408390218|gb|EKJ69624.1| hypothetical protein FPSE_10220 [Fusarium pseudograminearum CS3096]
Length = 1450
Score = 235 bits (599), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 203/692 (29%), Positives = 309/692 (44%), Gaps = 92/692 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM + PK+G P+ QD + + LS +D F R + L +
Sbjct: 528 RAEAINLMGIKHNLATPKNGEPVIAATQDFITAAYLLSGKDRFFDRKTFTYLCMHMM-DG 586
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVL---------STVIINLTPKDKVI-IRHGELLSGILD 122
T + PP I P LWTGKQ+ S V +NL K K R G+ +D
Sbjct: 587 KTHLDLPPPAIIAPQSLWTGKQLFGMLMRPNKDSPVKVNLDAKCKTYKARPGQCPD--MD 644
Query: 123 KKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQY-GLVHAVWDTHGAEHAIS 181
D + +R+ E++ G +DK G + + + + G + A++
Sbjct: 645 PN--------------DGWLVVRNSEVMCGRMDKSTVGDGKKDSIFYVILRDFGPDEAVT 690
Query: 182 LLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEA--ACNALGLPL 239
++ LAKL L GF++G+ D+ + +I + RL A C+ L
Sbjct: 691 AMNRLAKLCARQLTNHGFSIGIGDVFPPES-------LIQEKERLAAAAYKQCDDL---- 739
Query: 240 DTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQF 299
E + E A Q ++ ++ +L KV C +E NN
Sbjct: 740 ---IETFKAGKLEKAAGCNQEQS-LENFMSGILSKVRQQAGSYC-----VETLSRNNAPL 790
Query: 300 -MVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRF 358
M +SG+KGS +N Q+ L+GQ + G R A RTLP F P + GFV F
Sbjct: 791 VMAKSGSKGSDLNVAQMVALVGQQIIGGARVADGFQDRTLPHFHKNARQPPSKGFVKNSF 850
Query: 359 MTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLI 418
+G+ P EF FH M+GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR S ++
Sbjct: 851 YSGLSPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDDTVRTSGGGIV 910
Query: 419 QVLYGEDGLDV----------------TKRQYLT--DKQFSFLEDNIKWICSYKVILNLL 460
Q +G D LD T Q LT + + S D I+ C K L
Sbjct: 911 QFQFGADKLDPVDMEGSAAPVHFERTWTHAQSLTVDNTETSMTPDEIRSFCDSK--LEHE 968
Query: 461 KKHPLSLALLLLLTFKSSGKPNFIFSPHR-TKFTMDLLEQWYQLDDKARKKYRKKFKACP 519
++ + LL ++ H + + +E+ + ++ RK
Sbjct: 969 RRRYVRKGLLGGEVLDYEDTSDYGIDEHEGARGFLKAIERHVEALASKLERVRK------ 1022
Query: 520 QPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVG 579
++ F+ D +++ AD K T S + F + K + PG VG
Sbjct: 1023 ---LAGFEGDRMIRPTAQDHADRTAKVT-----LSTLQLFIKLCLEKYKKAHVEPGHAVG 1074
Query: 580 VLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDM 639
+ A SIGEP TQMTL TFHFAG M++T G+PR++EI+ A+KAI TP + P L +
Sbjct: 1075 AVGAHSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEII-NASKAISTPVITCP-LENN 1132
Query: 640 PKLEKKANRLAKS-MTRITMADVLEKVKIKEW 670
++E A R+ K + + ++D+L V+ EW
Sbjct: 1133 EQIE--AARVVKGRIEKTYISDILRFVE-DEW 1161
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 3/121 (2%)
Query: 890 KLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMN 949
K N++ GIEAA I E+ +V + +DPRH+ L+AD MT+ G + +
Sbjct: 1299 KASSNNVMECRDVLGIEAARTTIAVEIGSVMG--DMNIDPRHMQLLADVMTYKGEVLGIT 1356
Query: 950 RNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRN 1008
R G+ ++ S +Q +FE + + +A+ + D + S +++GQ GTG FQ+
Sbjct: 1357 RFGLSKMRDSVLQLASFEKTPDHLFEAAAGMKTDQIEGVSECIIMGQTMSVGTGAFQVVR 1416
Query: 1009 R 1009
R
Sbjct: 1417 R 1417
>gi|33326205|gb|AAQ08512.1| RNA polymerase II largest subunit [Cycas revoluta]
Length = 1013
Score = 235 bits (599), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 150/428 (35%), Positives = 224/428 (52%), Gaps = 54/428 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ G++QD ++ K++ RDTF+ + +MN++ +
Sbjct: 433 RAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL---MWWE 489
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N + + PTI KP PLWTGKQV + +I P+ +IR+ S ++ G
Sbjct: 490 NFDGKIPSPTILKPRPLWTGKQVFNLII----PRQINLIRYSAWHS---------ESETG 536
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ DT V I GE+LSG L KK G++ L+H +W+ G + A L L
Sbjct: 537 FI-TPGDTCVRIEKGEVLSGTLCKKTLGTSSGSLIHVIWEEVGPDAARKFLGHTQWLVNY 595
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L + GF++G+ D + + I+KA+ A N L I Q+
Sbjct: 596 WLLQQGFSIGIGDTIADAATMETINETISKAK-----AEVNQL----------IQLAHQK 640
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQV----------CLPEGLIEPFPANNLQFMVE 302
A + P +++++ N +NQV + L E +NNL+ MV
Sbjct: 641 ALEAEPG---------RTMMESFENRVNQVLNKARDDAGSSAQKSLSE---SNNLKAMVT 688
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
+G+KGS +N Q++ +GQ +EGKR GR+LP F + P + GFV+ ++ G+
Sbjct: 689 AGSKGSFINISQMTACVGQQNVEGKRIPFGFFGRSLPHFTRDDYGPESRGFVENSYLRGL 748
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
PQEFFFH M GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +IQ LY
Sbjct: 749 TPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLY 808
Query: 423 GEDGLDVT 430
GEDG+D
Sbjct: 809 GEDGMDAV 816
>gi|46136689|ref|XP_390036.1| hypothetical protein FG09860.1 [Gibberella zeae PH-1]
Length = 2443
Score = 235 bits (599), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 203/692 (29%), Positives = 309/692 (44%), Gaps = 92/692 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM + PK+G P+ QD + + LS +D F R + L +
Sbjct: 1521 RAEAINLMGIKHNLATPKNGEPVIAATQDFITAAYLLSGKDRFFDRKTFTYLCMHMM-DG 1579
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVL---------STVIINLTPKDKVI-IRHGELLSGILD 122
T + PP I P LWTGKQ+ S V +NL K K R G+ +D
Sbjct: 1580 KTHLDLPPPAIIAPQSLWTGKQLFGMLMRPNKDSPVKVNLDAKCKTYKARPGQCPD--MD 1637
Query: 123 KKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQY-GLVHAVWDTHGAEHAIS 181
D + +R+ E++ G +DK G + + + + G + A++
Sbjct: 1638 PN--------------DGWLVVRNSEVMCGRMDKSTVGDGKKDSIFYVILRDFGPDEAVT 1683
Query: 182 LLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEA--ACNALGLPL 239
++ LAKL L GF++G+ D+ + +I + RL A C+ L
Sbjct: 1684 AMNRLAKLCARQLTNHGFSIGIGDVFPPES-------LIQEKERLAAAAYKQCDDL---- 1732
Query: 240 DTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQF 299
E + E A Q ++ ++ +L KV C +E NN
Sbjct: 1733 ---IETFKAGKLEKAAGCNQEQS-LENFMSGILSKVRQQAGSYC-----VETLSRNNAPL 1783
Query: 300 -MVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRF 358
M +SG+KGS +N Q+ L+GQ + G R A RTLP F P + GFV F
Sbjct: 1784 VMAKSGSKGSDLNVAQMVALVGQQIIGGARVADGFQDRTLPHFHKNARQPPSKGFVKNSF 1843
Query: 359 MTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLI 418
+G+ P EF FH M+GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR S ++
Sbjct: 1844 YSGLSPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDDTVRTSGGGIV 1903
Query: 419 QVLYGEDGLDV----------------TKRQYLT--DKQFSFLEDNIKWICSYKVILNLL 460
Q +G D LD T Q LT + + S D I+ C K L
Sbjct: 1904 QFQFGADKLDPVDMEGSAAPVHFERTWTHAQSLTVDNTETSMTPDEIRSFCDSK--LEHE 1961
Query: 461 KKHPLSLALLLLLTFKSSGKPNFIFSPHR-TKFTMDLLEQWYQLDDKARKKYRKKFKACP 519
++ + LL ++ H + + +E+ + ++ RK
Sbjct: 1962 RRRYVRKGLLGGEVLDYEDTSDYGIDEHEGARGFLKAIERHVEALASKLERVRK------ 2015
Query: 520 QPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVG 579
++ F+ D +++ AD K T S + F + K + PG VG
Sbjct: 2016 ---LAGFEGDRMIRPTAQDHADRTAKVT-----LSTLQLFIKLCLEKYKKAHVEPGHAVG 2067
Query: 580 VLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDM 639
+ A SIGEP TQMTL TFHFAG M++T G+PR++EI+ A+KAI TP + P L +
Sbjct: 2068 AVGAHSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEII-NASKAISTPVITCP-LENN 2125
Query: 640 PKLEKKANRLAKS-MTRITMADVLEKVKIKEW 670
++E A R+ K + + ++D+L V+ EW
Sbjct: 2126 EQIE--AARVVKGRIEKTYISDILRFVE-DEW 2154
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 102/228 (44%), Gaps = 22/228 (9%)
Query: 806 DNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYD---KKNHMWCKLLFLPSNLFEE 862
D+ S G+R + RD ++ K + S D + N + L +P + + E
Sbjct: 2197 DDLSIDGDRIIVRVRDISDPAAKRTATRSKAAAAESGDMLLRANFLRRALPNVPISGYSE 2256
Query: 863 ---------KESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVII 913
+++ H + +G + ++ K N++ GIEAA I
Sbjct: 2257 ATRAIIQTSEQNTHTVLVEGYGLRECMTTEGVIG-TKASSNNVMECRDVLGIEAARTTIA 2315
Query: 914 REVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKI 972
E+ +V + +DPRH+ L+AD MT+ G + + R G+ ++ S +Q +FE + +
Sbjct: 2316 VEIGSVMG--DMNIDPRHMQLLADVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTPDHL 2373
Query: 973 RQASMQGREDSLRAPSARVMLGQECRQGTGLFQ------LRNREKKKK 1014
+A+ + D + S +++GQ GTG FQ +R+ E KKK
Sbjct: 2374 FEAAAGMKTDQIEGVSECIIMGQTMSVGTGAFQVVRRLGIRDSEVKKK 2421
>gi|397135892|gb|AFO11441.1| RNA polymerase I, partial [Debaryomyces hansenii]
Length = 872
Score = 235 bits (599), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 149/423 (35%), Positives = 220/423 (52%), Gaps = 39/423 (9%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S +AE S + V Q + P+ P+ G++QD + K++LRD F+ + MN++Y
Sbjct: 307 SQETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDNFIEYDQVMNMLY-- 364
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGS 128
I N + PP I P PLWTGKQ+LS I PK G L D K S
Sbjct: 365 -WIPNWDGVIPPPAIVSPKPLWTGKQLLSMAI----PK-------GIHLQRFDDGKNLLS 412
Query: 129 TQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAK 188
+ D + + GE++ G++DKK G+T GL+H V G++ L S + K
Sbjct: 413 PK--------DNGMLVVDGEIMFGVVDKKTVGATGGGLIHTVMREKGSQVCAQLFSSIQK 464
Query: 189 LFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISS 248
+ +L GF++G+ D + R T I A+ E +A L+ +P +
Sbjct: 465 VVNFWLLHNGFSIGIGDTIADSSTMRDVTTTIQDAKDKVQEIILDAQSNKLEPEPGMT-- 522
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGS 308
L+E++ + + +V N + NN++ MV SG+KGS
Sbjct: 523 -LRESF--------------EHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGS 567
Query: 309 TVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFF 368
+N Q+S +GQ +EGKR + R+LP F + SP + GFV+ ++ G+ PQEFF
Sbjct: 568 FINISQMSACVGQQIVEGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFF 627
Query: 369 FHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
FH MAGREGLIDTAVKT+ +GY+QR LVK LE + VHYD + R+S +IQ +YGEDG+D
Sbjct: 628 FHAMAGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGSTRNSLGDIIQFVYGEDGID 687
Query: 429 VTK 431
T+
Sbjct: 688 GTQ 690
>gi|212538083|ref|XP_002149197.1| DNA-directed RNA polymerase III largest subunit, putative
[Talaromyces marneffei ATCC 18224]
gi|210068939|gb|EEA23030.1| DNA-directed RNA polymerase III largest subunit, putative
[Talaromyces marneffei ATCC 18224]
Length = 1439
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 183/630 (29%), Positives = 296/630 (46%), Gaps = 53/630 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
++EA LM V + + PK+G P+ G IQD + + LS +D F R + + L +L
Sbjct: 529 RSEAMELMGVKNNLVTPKNGEPIIGAIQDFISAAYVLSSKDNFFDRRSFTQI---CLYML 585
Query: 73 NTEIR--TLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
E R PP I KP +WTGKQV + +++ D V + ++F + +
Sbjct: 586 GPETRFDLPPPAILKPQMMWTGKQVFN-ILMRPNKDDPVKVNIDAAC------REFKAPK 638
Query: 131 YGLVHAV--WDTHVTIRHGELLSGILDKKQFGSTQY-GLVHAVWDTHGAEHAISLLSCLA 187
G + D + IR+ E++ G++DK GS + + + + G A ++ L+
Sbjct: 639 DGQPKDLDPNDGWLVIRNSEIMCGVMDKSTIGSGKKDNVFYIMLRDFGPPAAAEGMNRLS 698
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIIS 247
KL + VGF++G+ D+ + + + +++ +A AAC+ E+I+
Sbjct: 699 KLCARWFTNVGFSIGITDVYPSERLVQTKNELVERAY-----AACD----------EVIA 743
Query: 248 SQLQEAYASIPQFR--AQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGA 305
+P ++ Q +L KV + C+ + + + N M SG+
Sbjct: 744 QYKAGKLEKLPGCDELQTMESQVSGILSKVRQQAGEECIKQ--LSKY--NAPLIMATSGS 799
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS++N Q+ ++GQ + +R RTLP F P + GFV F + + P
Sbjct: 800 KGSSINVSQMVAVVGQQIISSERVQDGFQDRTLPHFPKNARHPPSKGFVRNSFFSSLSPT 859
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EFFFH M+GREGLIDTAVKT+ +GY+ R L+K LE L+ YD T+R S S++Q YG D
Sbjct: 860 EFFFHAMSGREGLIDTAVKTAETGYMSRRLMKSLEDLSAKYDGTIRTSSASIVQFSYGGD 919
Query: 426 GLD-VTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFI 484
LD V F ++ + L ++ LL + +
Sbjct: 920 DLDPVDMEGKAKPVHFDRTYNHAMAVTHNNNERGLQPSEIRAITEELLSEERKRYVRKGL 979
Query: 485 FS---PHR--TKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENL 539
F P++ + + D LE D ++ KK A + + S ++S+
Sbjct: 980 FGEDLPYKDDSDYGTDQLESARAFLDSIQEHIEKKAVAMEKAMDS---------ALSDQE 1030
Query: 540 ADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFH 599
A + + G+ + F +K + PG VG + AQSIGEP TQMTL TFH
Sbjct: 1031 ARMALDHV-GKLSEGSLRYFIKSCLFKYEKAKIEPGHAVGAVGAQSIGEPGTQMTLKTFH 1089
Query: 600 FAGRGDMNVTLGIPRLREILMMATKAIKTP 629
FAG G++ +T G+PR++EI+ A+K I TP
Sbjct: 1090 FAGVGNLALTQGVPRIKEII-NASKEISTP 1118
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 62/115 (53%), Gaps = 3/115 (2%)
Query: 893 VNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNG 952
N++ M + GIEAA II E+ V +++DPRH+ L+AD MT +G + + R G
Sbjct: 1293 TNNVMEMRAVLGIEAARETIINEMGEVMK--DMDIDPRHMHLLADIMTTNGEVLGITRFG 1350
Query: 953 I-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+ ++ S +Q +FE + + A GR D + S +++G+ GTG ++
Sbjct: 1351 MAKMRDSVLQLASFEKTADHLFDAGGTGRTDRVEGVSECIIMGKTVSLGTGAMEV 1405
>gi|358393275|gb|EHK42676.1| hypothetical protein TRIATDRAFT_86460 [Trichoderma atroviride IMI
206040]
Length = 1463
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 204/698 (29%), Positives = 310/698 (44%), Gaps = 92/698 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL-CI 71
+AEA LM V PK+G P+ QD + + LS +D F R + + + +
Sbjct: 526 RAEAMTLMGVKHNLATPKNGEPIIAATQDFITASYLLSSKDRFYNRKAFTYICTHMMDGV 585
Query: 72 LNTEIRTLPPTIWKPMPLWTGKQVL---------STVIINLTPKDK-VIIRHGELLSGIL 121
+N ++ PP+I KP LWTGKQ+ S V++NL + + R G+ +
Sbjct: 586 VNIDLP--PPSIIKPEALWTGKQIFNVLMRPNKESPVLVNLDARCREYSARPGQCPD--M 641
Query: 122 DKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLV-HAVWDTHGAEHAI 180
D D + IR+ E++ G +DK GS + V + + G +HA+
Sbjct: 642 DPN--------------DAWLVIRNSEVMCGRMDKSIIGSGKKNSVFYIILRDFGPDHAV 687
Query: 181 SLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLD 240
+ ++ L KL L GF+LGV D+ E R R +++ A D
Sbjct: 688 AAMNRLTKLCARALGNQGFSLGVGDVFPITELTRSRDRLVQDA---------------YD 732
Query: 241 TDPEII----SSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANN 296
+I + +L++A ++ +L KV Q C ++ NN
Sbjct: 733 KSDALIETFKAGKLEKAPGC--DMEQTLEISISGILSKVRQQAGQQC-----VDTLSRNN 785
Query: 297 LQF-MVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVD 355
M SG+KG +N Q+ +GQ + G+R R+LP F P + GFV
Sbjct: 786 APLIMANSGSKGLHINVAQMVACVGQQIIGGQRVPDGFQDRSLPHFHKNARQPASKGFVR 845
Query: 356 GRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDL 415
F +G+ P EFFFH ++GREGLIDTAVKT+ +GY+ R L+K LE L+ YD TVR S
Sbjct: 846 NSFYSGLFPTEFFFHAISGREGLIDTAVKTAETGYMSRRLMKSLEDLSTQYDNTVRTSAG 905
Query: 416 SLIQVLYGEDGLDV------------------TKRQYLTDKQFSFLEDNIKWICSYKVIL 457
++Q +G D LD ++ + + S L + +CS +
Sbjct: 906 GIVQFQFGADKLDPVDMEGSAVPVAFDRTWTHSESTTWDNNERSLLPREVLAVCSSMLEK 965
Query: 458 NLLKKHPLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQ-LDDKARK--KYRKK 514
+ L LL + N H + +E Y + D+A+K K R
Sbjct: 966 EKQRYQRHRLVDNALLNYSDPTDEN--IDEHES--ARGFIETIYSYVSDRAQKISKARAL 1021
Query: 515 FKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANP 574
P P DA + LA V + TK + + +F + + P
Sbjct: 1022 VGLDPDPTQEDVIADAS-ADLKVQLA-RVERVTK--VSLTTLQRFVKECLERYHKAHVEP 1077
Query: 575 GENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIP 634
G VG + AQSIGEP TQMTL TFHFAG M++T G+PR++EI+ A+K I TP + P
Sbjct: 1078 GHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEII-NASKNISTPVITCP 1136
Query: 635 FLPDMPKLEKKANRLAKSMTRITMA-DVLEKVKIKEWL 671
L D + +A R+ K T DVL+ ++ EW+
Sbjct: 1137 LLNDK---QIEAARIVKGRIEKTFVIDVLKAIE-DEWV 1170
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 76/148 (51%), Gaps = 4/148 (2%)
Query: 863 KESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 922
++S+H++ +G + ++ K N + GIEAA I+ E+ V A
Sbjct: 1285 EQSEHMVLVEGYGLRACMTTEGVIG-TKASSNSVMEARDVLGIEAARTTIVVEISAVMA- 1342
Query: 923 YGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGRE 981
G+++DPRH+ L+AD MT G + + R G+ ++ S +Q +FE + + A+ + +
Sbjct: 1343 -GMDIDPRHIQLLADVMTFKGEVLGITRFGLSKMRESVLQLASFEKTPDHLFDAAAKMKT 1401
Query: 982 DSLRAPSARVMLGQECRQGTGLFQLRNR 1009
D + S +++GQ GTG FQ+ R
Sbjct: 1402 DRIEGVSECIIMGQTMSVGTGSFQVVRR 1429
>gi|225435153|ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Vitis
vinifera]
Length = 1383
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 201/665 (30%), Positives = 305/665 (45%), Gaps = 64/665 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+ EA LM V + PK+G L QD + S ++ +DTF RA + +C
Sbjct: 514 RTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRA-----AFSLMCSY 568
Query: 73 ---NTEIRTLP-PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGS 128
++ LP P I KP+ LWTGKQ+ + + L P V + L+ + +K +
Sbjct: 569 MGDGMDLVDLPTPAIIKPVELWTGKQLFNVL---LRPHANVRV----YLNLTVMEKTYNK 621
Query: 129 TQYGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLA 187
+ D V R+ EL+SG L K G+ + GL + + A A + ++ LA
Sbjct: 622 RRGKETMCPSDGFVYFRNSELISGQLGKATLGNGNKDGLFSVLLRDYNAHAAAACMNRLA 681
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIIS 247
KL ++ GF++G+ D+ + +++K I + E L P +
Sbjct: 682 KLSARWIGNHGFSIGIDDVQPGGLLNDQKSKRIEEGYENCHELIQQYNKGKLKLQPGCNA 741
Query: 248 SQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKG 307
+Q EA + +L+K+ VC+ E P M + G+KG
Sbjct: 742 AQTLEA-------------EITGVLNKIRETTANVCMEELHWRNSPL----IMSQCGSKG 784
Query: 308 STVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEF 367
S +N Q+ +GQ + G+R RTLP F +P A GFV F TG+ EF
Sbjct: 785 SPINISQMIACVGQQSVGGRRAPDGFIDRTLPHFPRKSKTPDAKGFVASSFYTGLTATEF 844
Query: 368 FFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL 427
FFH M GREGL+DTAVKT+ +GY+ R L+K LE L++ YD TVR+++ S++Q LYG+DG+
Sbjct: 845 FFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLSIQYDETVRNANGSIVQFLYGDDGM 904
Query: 428 DVTKRQYLTDKQFSF--LEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIF 485
D + + +F L +K C + LS AL + T K + N
Sbjct: 905 DPARMEGKDGFPLNFNRLFLKVKATCPAG------ENASLS-ALQIEETVKRLKEHNTSA 957
Query: 486 SPHRTKFTMDL---LEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADS 542
F +L LE+ ++KFK + L + H G + ++ +
Sbjct: 958 EGCSDAFKTNLSGFLEEC-----------KEKFKNTREALGLHGE---HVGEENLDIQEK 1003
Query: 543 VVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAG 602
K G T + + F D + L G +G + A SIGEP TQMTL TFHFAG
Sbjct: 1004 FAKNISGIT-SKQLQVFLDTCISRYQLKRIEAGTAIGAIGAHSIGEPGTQMTLKTFHFAG 1062
Query: 603 RGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVL 662
MNVTLG+PR++EI+ A K I TP + + K A + + R T+ V
Sbjct: 1063 VASMNVTLGVPRIKEIINGA-KRISTPIITAAL--ECNNNVKTARMVKGRIERTTLGQVA 1119
Query: 663 EKVKI 667
+ +KI
Sbjct: 1120 KSIKI 1124
Score = 77.0 bits (188), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 68/117 (58%), Gaps = 1/117 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N I + T GIEAA + II E++ A +G+ +D RH+ L+AD MT G + + R GI
Sbjct: 1251 NHIIEVQQTLGIEAARKCIINEIQYTMASHGMSIDIRHMMLLADLMTFRGEVLGITRFGI 1310
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNR 1009
+++ S + +FE + + AS+ GR+D + S +++G + GTG+ ++R R
Sbjct: 1311 QKMDKSVLMLASFEKTADHLFNASVSGRDDKIEGVSECIIMGIPMQLGTGILKVRQR 1367
>gi|33326215|gb|AAQ08517.1| RNA polymerase II largest subunit [Nymphaea odorata]
Length = 1013
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 157/455 (34%), Positives = 233/455 (51%), Gaps = 51/455 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ G++QD ++ K++ RDTF+ + +MN++ +
Sbjct: 433 RAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL---MWWE 489
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + + P I KP PLWTGKQV + +I PK +IR+ S ++ G
Sbjct: 490 DFDGKIPAPAIMKPRPLWTGKQVFNLII----PKQINLIRYSAWHS---------ESETG 536
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ DT V I GELLSG L KK G++ L+H +W+ G + A L L
Sbjct: 537 FI-TPGDTCVRIERGELLSGTLCKKTMGTSSGSLIHVIWEEVGPDAARKFLGHTQWLVNY 595
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L + F++G+ D + K + I+KA+ E A L+ +P + E
Sbjct: 596 WLLQNAFSIGIGDTIADASTMEKINETISKAKNEVKELIKAAQEKQLEAEP---GRTMME 652
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNIN---QVCLPEGLIEPFPANNLQFMVESGAKGST 309
++ + + +L+K ++ Q L E +NNL+ MV +G+KGS
Sbjct: 653 SF----------ENRVNQVLNKARDDAGSSAQRSLSE-------SNNLKAMVTAGSKGSF 695
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q++ +GQ +EGKR RTLP F + P + GFV+ ++ G+ PQEFFF
Sbjct: 696 INISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 755
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H M GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +IQ LYGEDG+D
Sbjct: 756 HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDA 815
Query: 430 T--KRQYLT---------DKQFSFLEDNIKWICSY 453
+ Q L DK F F D+ W SY
Sbjct: 816 VWIESQKLDSLKMKKSEFDKVFKFEFDDENWDPSY 850
>gi|145351142|ref|XP_001419944.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580177|gb|ABO98237.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 1646
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 149/438 (34%), Positives = 219/438 (50%), Gaps = 37/438 (8%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S+ +AE LM V + P+ P+ ++QD ++ ++ RDTF+T+ +MN++
Sbjct: 484 SYETRAEVKELMMVPKMIVSPQANKPVMAIVQDTLLGCRLITKRDTFITKDVFMNII--- 540
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGS 128
+ + + + + P I KP PLWTGKQV S ++ + +L +
Sbjct: 541 MWLEDWDGKVPKPAILKPQPLWTGKQVFSMMLPKVN---------------LLRTSAWAK 585
Query: 129 TQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAK 188
+ +V DT V I GELL+G L KK GS GL+H W+ G A L+S
Sbjct: 586 DSDDMAFSVDDTGVRIEQGELLTGTLCKKTMGSGGGGLIHVTWEEWGPIAARGLISQTQT 645
Query: 189 LFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISS 248
L ++ GFT+G+ D + E I KA+ E A L+ P +
Sbjct: 646 LVNYWVLHHGFTVGIADTIADDETMFSINNTITKAKADVKEVIKLAQNNELELQPGMTMQ 705
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGS 308
Q F ++++ D N+ + NN++ MV +G+KGS
Sbjct: 706 Q---------SFEQKVNQILNKARDNAGNSAQNSLMD--------TNNVKMMVTAGSKGS 748
Query: 309 TVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFF 368
+N Q+ +GQ +EGKR GRTLP F + P + GFV+ ++ G+ PQEFF
Sbjct: 749 FLNISQMIACVGQQNVEGKRIPYGFKGRTLPHFSKDDFGPESRGFVENSYLRGLTPQEFF 808
Query: 369 FHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
FH M GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +IQ LYGEDG+D
Sbjct: 809 FHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDVVVKYDGTVRNSVGDVIQFLYGEDGMD 868
Query: 429 VT--KRQYLTDKQFSFLE 444
T + Q + +FS E
Sbjct: 869 ATMIESQSIDTLRFSVKE 886
Score = 148 bits (374), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 133/459 (28%), Positives = 215/459 (46%), Gaps = 68/459 (14%)
Query: 569 LSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKT 628
++LA PG+ +G +AAQSIGEP+TQMTLNTFHFAG NVTLG+PRL+EI+ +A K+IKT
Sbjct: 1051 MALAPPGDGIGTVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINIA-KSIKT 1109
Query: 629 PSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEP-HMNYQMKFCF 687
PS+ I P++ +A S+ T+ V ++ P+P + F
Sbjct: 1110 PSLTIALKPELAGDRTRAKDCQASLEYTTLHSVAAVTEV----HYDPDPTDTVIEEDREF 1165
Query: 688 IPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMED----- 742
+ A+ V PS++ R IE +R+ M D
Sbjct: 1166 VRAYYEMPDEDVDPSRMSPWLLR----------------------IELNREMMVDKKLLM 1203
Query: 743 -DVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDE-ERMS 800
DV + E G D+S D + + ++ E +E+ E E
Sbjct: 1204 ADVAERINEDFAG--------DLSCIFNDDNSEKLVLRIRIMNPEGVKYEDASTEDEVFL 1255
Query: 801 EREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNLF 860
+R E SN+ R D VF+++ K+N + K + LF
Sbjct: 1256 KRLETQMLSNLALR---GIPDIKKVFIREA-------------KQNAINSK-----TELF 1294
Query: 861 EEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 920
EK ++ +L T+G+N+ + + +D + N + + GIEA ++RE++ V
Sbjct: 1295 -EKTTEWMLDTEGVNLLEVMAHPD-VDFTRTTSNHLIEVIQVLGIEAVRNTLLRELRGVI 1352
Query: 921 AVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQG 979
G V+ RHL+++ + MT+ G +++ R+GI R+ + + +FE ++ + +AS
Sbjct: 1353 EFDGSYVNYRHLAILVEVMTYRGHLMSITRHGINRVETGPLMRCSFEETVDILMEASAFS 1412
Query: 980 REDSLRAPSARVMLGQECRQGTGLFQLR-NREKKKKKVE 1017
D++ PS +MLGQ C GTG F+L N E + VE
Sbjct: 1413 ERDNMTGPSENIMLGQFCPIGTGEFKLHLNDELLQDAVE 1451
>gi|397135918|gb|AFO11454.1| RNA polymerase I, partial [Citeromyces matritensis]
Length = 860
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 148/421 (35%), Positives = 222/421 (52%), Gaps = 44/421 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S L +V SQ + P+ P+ G++QD + K++LRD+F+ + M++++ I
Sbjct: 309 RAELSQLCSVPSQIVSPQSNKPVMGIVQDTLCGVRKMTLRDSFIDYDQVMSMLF---WIP 365
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ P I KP PLW+GKQ+ S I P+ ++R LD + S
Sbjct: 366 QWDGVIPQPAILKPKPLWSGKQLFSMAI----PRGIHLLR--------LDGATYLSPN-- 411
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
DT + IR+GE++ G++DKK GS GLVH V G+ L + K+
Sbjct: 412 ------DTGMMIRNGEVMFGVVDKKTVGSAGGGLVHTVMREKGSAICSDLFGNIQKVVNF 465
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + R+ T I +A+ E +A L+ +P + + E
Sbjct: 466 WLLHNGFSIGIGDTIADGSTMREITDTITRAKEEVQEIILDAQSNQLEAEPGMTLRETXE 525
Query: 253 AYAS--IPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTV 310
+ S + Q R R + L + NN++ MV SG+KGS +
Sbjct: 526 SKVSRTLNQARDSAGRSAEMSLKDL-------------------NNVKQMVTSGSKGSFI 566
Query: 311 NTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFH 370
N Q+S +GQ +EGKR + R+LP F + SP + GFV+ ++ G+ PQEFFFH
Sbjct: 567 NISQMSACVGQQIVEGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFH 626
Query: 371 CMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVT 430
MAGREGL DTAVKT+ +GY+QR LVK LE + VHYD T R+S ++Q +YGEDGLD T
Sbjct: 627 AMAGREGLXDTAVKTASTGYIQRRLVKALEDIMVHYDGTTRNSLGDIVQFIYGEDGLDGT 686
Query: 431 K 431
+
Sbjct: 687 Q 687
>gi|33326207|gb|AAQ08513.1| RNA polymerase II largest subunit [Pinus nigra]
Length = 1013
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 150/432 (34%), Positives = 225/432 (52%), Gaps = 62/432 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ G++QD ++ K++ RDTF+ + +MN++ +
Sbjct: 433 RAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL---MWWE 489
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR----HGELLSGILDKKQFGS 128
+ + + PTI+KP P+WTGKQV + +I PK +IR H E SG++
Sbjct: 490 DFDGKIPAPTIYKPRPIWTGKQVFNLII----PKQINLIRTSAWHSESESGVITPG---- 541
Query: 129 TQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAK 188
DT V I GE++SG L KK G++ L+H +W+ G + A L
Sbjct: 542 ----------DTLVRIEKGEVISGTLCKKTLGTSSGSLIHVIWEEVGPDAARKFLGHTQW 591
Query: 189 LFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISS 248
L +L + GF++G+ D + D ++IN+ A N + + + E
Sbjct: 592 LVNYWLLQQGFSIGIGDTIA----DAATMEVINET----ISKAKNEVKMLIKAAQE---- 639
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQV----------CLPEGLIEPFPANNLQ 298
Q A+ R ++++ N +NQV + L E +NNL+
Sbjct: 640 ---------KQLEAEPGR---TMMESFENRVNQVLNKARDDAGSSAQKSLSE---SNNLK 684
Query: 299 FMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRF 358
MV +G+KGS +N Q++ +GQ +EGKR GRTLP F + P + GFV+ +
Sbjct: 685 AMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFDGRTLPHFTKDDKGPESRGFVENSY 744
Query: 359 MTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLI 418
+ G+ PQEFFFH M GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +I
Sbjct: 745 LRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVI 804
Query: 419 QVLYGEDGLDVT 430
Q LYGEDG+D
Sbjct: 805 QFLYGEDGMDAV 816
>gi|119490427|ref|XP_001263030.1| DNA-directed RNA polymerase III largest subunit, putative
[Neosartorya fischeri NRRL 181]
gi|119411190|gb|EAW21133.1| DNA-directed RNA polymerase III largest subunit, putative
[Neosartorya fischeri NRRL 181]
Length = 1453
Score = 234 bits (598), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 194/651 (29%), Positives = 300/651 (46%), Gaps = 94/651 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + PK+G P+ IQD + + LS +D F R + + L +L
Sbjct: 530 RAEAMELMGVKNNLATPKNGEPIISAIQDFISAAYILSSKDNFFDRRSFTQI---CLYML 586
Query: 73 NTEIR--TLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDK--KQFGS 128
E R PP + KP LWTGKQV + +++ + D V++ LD ++F
Sbjct: 587 GPETRFDLPPPAVLKPQMLWTGKQVFN-ILMRPSKDDPVLVN--------LDAACREFKP 637
Query: 129 TQYGLVHAV--WDTHVTIRHGELLSGILDKKQFGSTQY-GLVHAVWDTHGAEHAISLLSC 185
+ G + D + IR+ E++ G++DK GS + + + + G A ++
Sbjct: 638 PKDGRPKDLDPNDGWLVIRNSEVMCGVMDKATIGSGKKDNVFYIMLRDFGPAAAAEGMNR 697
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEI 245
L+KL + +GF++G+ D+ + R + +++ A A C+ E+
Sbjct: 698 LSKLSARWFTNMGFSIGITDVYPSESLVRSKNELVEAAY-----AQCD----------EV 742
Query: 246 IS---SQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
I+ + E Y + + ++ Q +L KV C+ + + + N+ M
Sbjct: 743 IAKYKAGTLEKYPGCDELQT-MENQLSGILSKVRQQAGDECIAQ--LSKY--NSPLIMAT 797
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
SG+KGS++N Q+ L+GQ + G+R RTLP F P + GFV F +G+
Sbjct: 798 SGSKGSSINVSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNARQPPSKGFVRNSFFSGL 857
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
P EF FH M+GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR+S +++Q Y
Sbjct: 858 LPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSSRYDDTVRNSSDAIVQFQY 917
Query: 423 GEDGLDVTKRQYLT-----DKQF-------------SFLEDNIKWICSYKVILNLLKKHP 464
G+D LD + D+ F S L I +C +L K
Sbjct: 918 GDDKLDPVDMEGKAKPVHFDRTFIHAESITYDNDERSLLPHEIMEVCE-----EMLSKER 972
Query: 465 LSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQ-LDDKARKKYRKKFKACPQPLI 523
L LL K S + + D LE Q + KA K + P
Sbjct: 973 AKLVREDLLGNKLSYMDRSDHGVDQFESARDFLESIQQYISSKADKLISRGGDIDPSDER 1032
Query: 524 STFQPDAHFGSISEN-----LADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENV 578
S + H G ++E + ++KY K + + PG V
Sbjct: 1033 SQ-KGLNHTGKLTEKTLRTFITSCLMKYKKAQVE---------------------PGHAV 1070
Query: 579 GVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
G + AQSIGEP TQMTL TFHFAG M++T G+PR++EI+ A+K I TP
Sbjct: 1071 GAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEII-NASKEISTP 1120
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 61/114 (53%), Gaps = 3/114 (2%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N++ M GIEAA I++E+ V GI DPRH+ L+AD MT+ G + + R G+
Sbjct: 1298 NNVMEMRDVLGIEAARVTIVQEISEVMKDMGI--DPRHMQLLADVMTYKGEVLGITRFGL 1355
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
++ S +Q +FE + + A GR D + S +++G+ GTG ++
Sbjct: 1356 AKMRDSVLQLASFEKTADHLFDAGGAGRTDLIEGVSECIIMGKTVSLGTGAMEV 1409
>gi|66359288|ref|XP_626822.1| DNA-directed RNA polymerase,possible RNA polymerase A/beta'/A''
subunit, long PHYSPTS repeat at
gi|46228363|gb|EAK89262.1| putative DNA-directed RNA polymerase,possible RNA polymerase
A/beta'/A'' subunit, long PHYSPTS repeat at C-terminus
[Cryptosporidium parvum Iowa II]
Length = 1902
Score = 234 bits (598), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 153/440 (34%), Positives = 230/440 (52%), Gaps = 49/440 (11%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
SH ++E LM V Q + P+ P+ G++QD ++ L+ + TFLTR +++ L+
Sbjct: 497 SHETRSEIKNLMMVPRQIVSPQGNKPVIGIVQDSLLGIFLLTRKSTFLTRDKFLQLL--- 553
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLT-----PKDKVIIRHGELLSGILDK 123
LCI PP I +P PLWTGKQ++ TV++ T P + ++R G ++S I
Sbjct: 554 LCIPYWNGNIPPPAILRPQPLWTGKQII-TVLLAFTTDLGEPIELNLMRDGSIVS-IKQS 611
Query: 124 KQFGST-----QYGLVHAVW----DTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTH 174
+T + +V+ W D V I+ GE + G+L KK GS+ L+H +W+
Sbjct: 612 NNSSNTDKDDSKEAIVNNPWISELDNQVIIQKGEHICGVLTKKIAGSSSGSLIHILWNEI 671
Query: 175 GAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIIN--KARRLGTEAAC 232
G E L+ + +L GFT+G +DI Q ++ KI+N + +L +
Sbjct: 672 GPEKTGLFLTYTQMVVNTWLLEHGFTVGCQDI---QPQNYTLEKIMNSLEGSKLQVQQII 728
Query: 233 N-ALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDK----VTNNINQVCLPEG 287
A LD P + I F AQ++++ S + T N++
Sbjct: 729 RRAQKGKLDCQP---------GKSLIESFEAQVNQELNSARELSGTIATENLDSS----- 774
Query: 288 LIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVS 347
NN+ MV+ G+KGST+N QI +GQ +EGKR R+LP FL Y+
Sbjct: 775 ------KNNIVAMVQCGSKGSTINISQIMACVGQQNVEGKRIPFGFRDRSLPHFLKYDYG 828
Query: 348 PRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYD 407
P + GFV +++G+ PQE FFH M GREG+IDTA KTS +GY+QR L+K +E V YD
Sbjct: 829 PESRGFVSNSYLSGLTPQEVFFHAMGGREGIIDTACKTSETGYIQRRLIKAMEDCMVQYD 888
Query: 408 MTVRDSDLSLIQVLYGEDGL 427
TVR+S+ +IQ LYGEDG+
Sbjct: 889 RTVRNSNGDIIQFLYGEDGM 908
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 57/70 (81%), Gaps = 4/70 (5%)
Query: 564 FYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMAT 623
FY+ SLA+ GE VG +AAQSIGEP+TQMTLNTFHFAG G NVTLG+PRLRE++ +A
Sbjct: 1108 FYR---SLAHSGEMVGTIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLRELINVA- 1163
Query: 624 KAIKTPSMEI 633
K ++TP++ +
Sbjct: 1164 KNVRTPTLTV 1173
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 82/145 (56%), Gaps = 2/145 (1%)
Query: 863 KESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 922
++++ +L TDG N+ + + +D + NDI + S GIEA R ++RE++ V +
Sbjct: 1373 RDNQWVLDTDGCNLEAVLCHT-AIDSTRTISNDITEVFSVLGIEAVRRALLRELRTVISF 1431
Query: 923 YGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGRE 981
G V+ RHL+L+ D MT G +++ R+GI R++ +QK +FE +E + A+M G
Sbjct: 1432 DGSYVNYRHLALLCDNMTQKGHLMSITRHGINRVDKGPLQKCSFEETVEVLMDAAMFGET 1491
Query: 982 DSLRAPSARVMLGQECRQGTGLFQL 1006
D L S VMLGQ GT F +
Sbjct: 1492 DYLNGVSENVMLGQLAPYGTACFDV 1516
>gi|67597591|ref|XP_666157.1| DNA-directed RNA polymerase II largest chain [Cryptosporidium
hominis TU502]
gi|54657094|gb|EAL35927.1| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain
[Cryptosporidium hominis]
Length = 1895
Score = 234 bits (597), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 153/440 (34%), Positives = 230/440 (52%), Gaps = 49/440 (11%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
SH ++E LM V Q + P+ P+ G++QD ++ L+ + TFLTR +++ L+
Sbjct: 490 SHETRSEIKNLMMVPRQIVSPQGNKPVIGIVQDSLLGIFLLTRKSTFLTRDKFLQLL--- 546
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLT-----PKDKVIIRHGELLSGILDK 123
LCI PP I +P PLWTGKQ++ TV++ T P + ++R G ++S I
Sbjct: 547 LCIPYWNGNIPPPAILRPQPLWTGKQII-TVLLAFTTDLGEPIELNLMRDGSIVS-IKQS 604
Query: 124 KQFGST-----QYGLVHAVW----DTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTH 174
+T + +V+ W D V I+ GE + G+L KK GS+ L+H +W+
Sbjct: 605 NNSSNTDKDDSKEAIVNNPWISELDNQVIIQKGEHICGVLTKKIAGSSSGSLIHILWNEI 664
Query: 175 GAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIIN--KARRLGTEAAC 232
G E L+ + +L GFT+G +DI Q ++ KI+N + +L +
Sbjct: 665 GPEKTGLFLTYTQMVVNTWLLEHGFTVGCQDI---QPQNYTLEKIMNSLEGSKLQVQQII 721
Query: 233 N-ALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDK----VTNNINQVCLPEG 287
A LD P + I F AQ++++ S + T N++
Sbjct: 722 RRAQKGKLDCQP---------GKSLIESFEAQVNQELNSARELSGTIATENLDSS----- 767
Query: 288 LIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVS 347
NN+ MV+ G+KGST+N QI +GQ +EGKR R+LP FL Y+
Sbjct: 768 ------KNNIVAMVQCGSKGSTINISQIMACVGQQNVEGKRIPFGFRDRSLPHFLKYDYG 821
Query: 348 PRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYD 407
P + GFV +++G+ PQE FFH M GREG+IDTA KTS +GY+QR L+K +E V YD
Sbjct: 822 PESRGFVSNSYLSGLTPQEVFFHAMGGREGIIDTACKTSETGYIQRRLIKAMEDCMVQYD 881
Query: 408 MTVRDSDLSLIQVLYGEDGL 427
TVR+S+ +IQ LYGEDG+
Sbjct: 882 RTVRNSNGDIIQFLYGEDGM 901
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 57/70 (81%), Gaps = 4/70 (5%)
Query: 564 FYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMAT 623
FY+ SLA+ GE VG +AAQSIGEP+TQMTLNTFHFAG G NVTLG+PRLRE++ +A
Sbjct: 1101 FYR---SLAHSGEMVGTIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLRELINVA- 1156
Query: 624 KAIKTPSMEI 633
K ++TP++ +
Sbjct: 1157 KNVRTPTLTV 1166
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 82/145 (56%), Gaps = 2/145 (1%)
Query: 863 KESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 922
++++ +L TDG N+ + + +D + NDI + S GIEA R ++RE++ V +
Sbjct: 1366 RDNQWVLDTDGCNLEAVLCHT-AIDSTRTISNDITEVFSVLGIEAVRRALLRELRTVISF 1424
Query: 923 YGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGRE 981
G V+ RHL+L+ D MT G +++ R+GI R++ +QK +FE +E + A+M G
Sbjct: 1425 DGSYVNYRHLALLCDNMTQKGHLMSITRHGINRVDKGPLQKCSFEETVEVLMDAAMFGET 1484
Query: 982 DSLRAPSARVMLGQECRQGTGLFQL 1006
D L S VMLGQ GT F +
Sbjct: 1485 DYLNGVSENVMLGQLAPYGTACFDV 1509
>gi|294654840|ref|XP_002770038.1| DEHA2A13618p [Debaryomyces hansenii CBS767]
gi|199429189|emb|CAR65414.1| DEHA2A13618p [Debaryomyces hansenii CBS767]
Length = 1749
Score = 234 bits (597), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 149/423 (35%), Positives = 220/423 (52%), Gaps = 39/423 (9%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S +AE S + V Q + P+ P+ G++QD + K++LRD F+ + MN++Y
Sbjct: 499 SQETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDNFIEYDQVMNMLY-- 556
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGS 128
I N + PP I P PLWTGKQ+LS I PK G L D K S
Sbjct: 557 -WIPNWDGVIPPPAIVSPKPLWTGKQLLSMAI----PK-------GIHLQRFDDGKNLLS 604
Query: 129 TQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAK 188
+ D + + GE++ G++DKK G+T GL+H V G++ L S + K
Sbjct: 605 PK--------DNGMLVVDGEIMFGVVDKKTVGATGGGLIHTVMREKGSQVCAQLFSSIQK 656
Query: 189 LFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISS 248
+ +L GF++G+ D + R T I A+ E +A L+ +P +
Sbjct: 657 VVNFWLLHNGFSIGIGDTIADSSTMRDVTTTIQDAKDKVQEIILDAQSNKLEPEPGMT-- 714
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGS 308
L+E++ + + +V N + NN++ MV SG+KGS
Sbjct: 715 -LRESF--------------EHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGS 759
Query: 309 TVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFF 368
+N Q+S +GQ +EGKR + R+LP F + SP + GFV+ ++ G+ PQEFF
Sbjct: 760 FINISQMSACVGQQIVEGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFF 819
Query: 369 FHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
FH MAGREGLIDTAVKT+ +GY+QR LVK LE + VHYD + R+S +IQ +YGEDG+D
Sbjct: 820 FHAMAGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGSTRNSLGDIIQFVYGEDGID 879
Query: 429 VTK 431
T+
Sbjct: 880 GTQ 882
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 67/98 (68%), Gaps = 1/98 (1%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
S+ +PGE VGV+AAQSIGEP+TQMTLNTFH+AG NVTLG+PRL+EIL +A K IKTP
Sbjct: 1062 SIVHPGEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVA-KNIKTP 1120
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKI 667
++ + + +KA + ++ T+ +V +I
Sbjct: 1121 ALTVYLEKESAADIEKAKIVQSAIEHTTLKNVTSATEI 1158
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 81/153 (52%), Gaps = 3/153 (1%)
Query: 856 PSNLFEEKESKH-LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIR 914
P E K+S+ +L+TDG+N+ + + D ++ Y N+ + S GIEA + +
Sbjct: 1299 PDITGEFKQSQEWVLETDGVNLADVMAVSGV-DSSRTYSNNFIEVLSVLGIEATRTALFK 1357
Query: 915 EVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIR 973
E+ NV A G V+ RH++L+ D MT G +A+ R+GI R + + + +FE +E +
Sbjct: 1358 EILNVIAFDGSYVNYRHMALLVDVMTSRGHLMAITRHGINRADTGALMRCSFEETVEILL 1417
Query: 974 QASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+A D R S VMLGQ GTG F +
Sbjct: 1418 EAGSAAELDDCRGISENVMLGQMAPLGTGAFDV 1450
>gi|308808522|ref|XP_003081571.1| DNA-directed RNA polymerase (ISS) [Ostreococcus tauri]
gi|116060036|emb|CAL56095.1| DNA-directed RNA polymerase (ISS) [Ostreococcus tauri]
Length = 1673
Score = 234 bits (597), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 150/422 (35%), Positives = 214/422 (50%), Gaps = 35/422 (8%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S+ KAE LM V + P+ P+ ++QD ++ ++ RDTF+ + +MN++
Sbjct: 504 SYETKAEVKELMMVPKMIVSPQANKPVMAIVQDTLLGCRLITKRDTFIPKDVFMNII--- 560
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGS 128
+ + + + + P I KP PLWTGKQV S ++ PK +L +
Sbjct: 561 MWLEDWDGKIPKPAILKPQPLWTGKQVFSMML----PK-----------VNLLRTSAWAR 605
Query: 129 TQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAK 188
+ +V DT V I GELL+G L KK GS GL+H W+ G A L+S
Sbjct: 606 DADDVTFSVDDTGVRIEQGELLTGTLCKKTMGSGGGGLIHVTWEEWGPIAARGLISQTQT 665
Query: 189 LFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISS 248
L +L GFT+G+ D + E I KA+ E A L+ P +
Sbjct: 666 LVNYWLLHHGFTVGIADTIADDETMFTINNTITKAKADVKEVIKQAQNNELELQPGMTMQ 725
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGS 308
Q F ++++ D N+ Q L + NN++ MV +G+KGS
Sbjct: 726 Q---------SFEQKVNQILNKARDNAGNSA-QNSLKD-------TNNVKMMVTAGSKGS 768
Query: 309 TVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFF 368
+N Q+ +GQ +EGKR GRTLP F + P + GFV+ ++ G+ PQEFF
Sbjct: 769 FLNISQMIACVGQQNVEGKRIPYGFKGRTLPHFSKDDFGPESRGFVENSYLRGLTPQEFF 828
Query: 369 FHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
FH M GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +IQ LYGEDG+D
Sbjct: 829 FHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDVVVKYDGTVRNSVGDVIQFLYGEDGMD 888
Query: 429 VT 430
T
Sbjct: 889 AT 890
Score = 148 bits (374), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 126/447 (28%), Positives = 208/447 (46%), Gaps = 67/447 (14%)
Query: 569 LSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKT 628
++LA PG+ +GV+AAQSIGEP+TQMTLNTFHFAG NVTLG+PRL+EI+ +A K IKT
Sbjct: 1071 MALAPPGDGIGVVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINIA-KQIKT 1129
Query: 629 PSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEP-HMNYQMKFCF 687
PS+ + P+ KA + S+ T+ V ++ P+P + F
Sbjct: 1130 PSLTVALKPEFASDRTKAKDVQASLEYTTLHSVAAVTEV----HYDPDPTDTVIEEDREF 1185
Query: 688 IPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMED----- 742
+ A+ V PS++ R IE +R+ M D
Sbjct: 1186 VRAYYEMPDEDVDPSRMSPWLLR----------------------IELNREMMVDKKLLM 1223
Query: 743 -DVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPE-DEERMS 800
DV + E G D+S D + + ++ + E +++ ++E
Sbjct: 1224 ADVAERINEDFGG--------DLSCIFNDDNSEKLVLRIRIMKAEGEKYDDSSIEDEVFL 1275
Query: 801 EREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNLF 860
+R E SN+ R D VF+++ + N V+ P
Sbjct: 1276 KRIETQMLSNLALR---GIPDIKKVFIREA--KSNAVN-----------------PRTQL 1313
Query: 861 EEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 920
EK ++ +L T+G+N+ + + +D + N + + GIEA ++RE++ V
Sbjct: 1314 FEKHTEWMLDTEGVNLLEVMAHPD-VDFTRTTSNHLIEVIQILGIEAVRNTLLRELRGVI 1372
Query: 921 AVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQG 979
G V+ RHL+++ + MT+ G V++ R+GI R + + +FE ++ + +A+
Sbjct: 1373 EFDGSYVNYRHLAILVEVMTYRGHLVSITRHGINRAETGALMRCSFEETVDILMEAAAFS 1432
Query: 980 REDSLRAPSARVMLGQECRQGTGLFQL 1006
D++ PS +MLGQ C GTG F+L
Sbjct: 1433 ERDNMTGPSENIMLGQFCPIGTGEFKL 1459
>gi|21280521|gb|AAM45153.1|AF395835_1 RNA polymerase II largest subunit [Cercomonas ATCC50319]
Length = 1014
Score = 234 bits (597), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 149/449 (33%), Positives = 231/449 (51%), Gaps = 41/449 (9%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S +AEA +M Q + P+ P+ G++QD ++ K + RD FL +A +V+
Sbjct: 424 SMMTRAEALEIMLCPRQIVSPQANKPVIGIVQDTLLGCMKFTYRDNFLDKA----MVFNI 479
Query: 69 LCILNTEIRTLP-PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
L L T+P P I KP+PLW+GKQ+ S +I + + K +G D +
Sbjct: 480 LMHLENWDGTVPIPCILKPVPLWSGKQIFSLIIPRVNMERKA--------NGHPDSEH-- 529
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
V +V DT V I G+LL G++DK+ G+T L+H +W+ G E L+
Sbjct: 530 -----TVMSVNDTRVRIEQGQLLMGVVDKQTVGNTPGSLIHVIWNECGFEATRQFLAECQ 584
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIIS 247
K+ +L GF++G+ D + K I +A++ A LD P S
Sbjct: 585 KVVNYFLMHYGFSVGIGDTIAPPSTLEKIESTIKQAKKEVLNLIKKAXSGNLDRQPG--S 642
Query: 248 SQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKG 307
+ L+ + Q +L+K ++ + + NN+ MV +G+KG
Sbjct: 643 TNLES-----------FENQVNGVLNKAADDAGKSVKAQLT----KMNNINAMVSAGSKG 687
Query: 308 STVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEF 367
+ +N QI +GQ + GKR GRTLP F ++SP + GFV ++ G+ PQEF
Sbjct: 688 NAINICQIIACVGQQNVSGKRIPFGFHGRTLPHFNKGDLSPESKGFVSNSYLQGLTPQEF 747
Query: 368 FFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL 427
FFH M GREGLIDTAVKT+ +GY+QR LVK +E + + YD TVR+S +IQ YGEDG+
Sbjct: 748 FFHAMGGREGLIDTAVKTAETGYIQRRLVKAMEDVMIKYDATVRNSLGDIIQFAYGEDGM 807
Query: 428 DVTKRQYLTDKQFSFLE-DNIKWICSYKV 455
D Y+ ++ L+ DN +++ +Y++
Sbjct: 808 DGV---YIEKQKLDSLKMDNARFLKTYQL 833
>gi|412992604|emb|CCO18584.1| RNA polymerase II largest subunit [Bathycoccus prasinos]
Length = 1667
Score = 234 bits (597), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 148/425 (34%), Positives = 227/425 (53%), Gaps = 41/425 (9%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S+ +AE + LM V + P+ P+ ++QD ++ K++ R+TF+ + +MN++
Sbjct: 452 SYETRAEVAELMMVPKMIVSPQANKPVMAIVQDTLLGCRKMTSRETFIKKDVFMNII--- 508
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGS 128
+ + N + + P I KP PLWTGKQVLS ++ ++ +IR D
Sbjct: 509 MWLENWDGKVPKPAILKPEPLWTGKQVLSMMLPHIN-----LIRTSSWARDADD------ 557
Query: 129 TQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAK 188
L +V DT V I GEL++G L KK GS GL+H W+ G A +L+S + +
Sbjct: 558 ----LDFSVDDTGVRIERGELITGTLCKKTMGSGGGGLIHVTWEEWGPTAARNLVSEVQR 613
Query: 189 LFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISS 248
L +L GFT G+ D + R I KA+ A L++ P +
Sbjct: 614 LVNYWLLHHGFTCGIIDTIADDGTMRTINDTITKAKSDVKAVIKLAQNGELESQPGMT-- 671
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKVTNNIN---QVCLPEGLIEPFPANNLQFMVESGA 305
+Q+++ +++ +L+K ++ QV L + +NN++ MV++G+
Sbjct: 672 -MQQSF----------EQKVNQILNKARDDAGTAAQVSLKD-------SNNVKMMVQAGS 713
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS +N Q+ +GQ +EGKR R+LP F + P + GFV+ ++ G+ PQ
Sbjct: 714 KGSFLNISQMCACVGQQNVEGKRIPYGFVDRSLPHFSKDDFGPESRGFVENSYLRGLTPQ 773
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EFFFH M GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +IQ LYGED
Sbjct: 774 EFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDVIVKYDGTVRNSVGDVIQFLYGED 833
Query: 426 GLDVT 430
G+D T
Sbjct: 834 GMDAT 838
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 66/98 (67%), Gaps = 1/98 (1%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
+LA PG+ +G +AAQSIGEP+TQMTLNTFHFAG NVTLG+PRL+EI+ +A K+IKTP
Sbjct: 1024 ALAPPGDGIGTVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINIA-KSIKTP 1082
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKI 667
S+ I D+ A + ++ T+A V +I
Sbjct: 1083 SLTIALRKDLASDRGHAKNVQATLEYTTLASVAAMTEI 1120
Score = 70.5 bits (171), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 84/158 (53%), Gaps = 3/158 (1%)
Query: 862 EKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 921
EK S+ +L T+G N+ + + + D ++ N + + + GIEA +++E++ V
Sbjct: 1269 EKHSEWMLDTEGCNLLEVMAHPDV-DFSRTTSNHLVEVITILGIEAVRNALLKELRGVIE 1327
Query: 922 VYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGR 980
G V+ RHL+++ + MT+ G +++ R+GI R + + +FE ++ + +A+
Sbjct: 1328 FDGSYVNYRHLAILVEVMTYRGHLMSITRHGINRAETGPLMRCSFEETVDILMEAAAFSE 1387
Query: 981 EDSLRAPSARVMLGQECRQGTGLFQLR-NREKKKKKVE 1017
D + S +MLGQ C GTG F L N E K ++
Sbjct: 1388 RDGMTGVSENIMLGQFCPVGTGEFGLHLNEEMLKDAID 1425
>gi|340519695|gb|EGR49933.1| predicted protein [Trichoderma reesei QM6a]
Length = 1465
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 196/692 (28%), Positives = 314/692 (45%), Gaps = 80/692 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + PK+G P+ QD + + LS +D F R + + + +
Sbjct: 526 RAEAITLMGVKNNLATPKNGEPIIAATQDFITASYLLSSKDRFYNRKAFTYICTHMVDGV 585
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVL---------STVIINLTPKDK-VIIRHGELLSGILD 122
T I PP+I KP LWTGKQ+ S V++NL + + R G+ +D
Sbjct: 586 -THIDLPPPSIIKPEALWTGKQIFNVLMRPNKQSPVLVNLDARCREYSARPGQCPD--MD 642
Query: 123 KKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLV-HAVWDTHGAEHAIS 181
D + IR+ E++ G +DK GS + V + + G +HA+
Sbjct: 643 PN--------------DAWLVIRNSEVMCGRMDKSIIGSGKKNSVFYIILRDFGPDHAVY 688
Query: 182 LLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDT 241
++ L KL L GF+LGV D+ E + R +++ A D
Sbjct: 689 AMNRLTKLCARQLGNQGFSLGVGDVFPSTELTKSRDRLVQDA---------------YDK 733
Query: 242 DPEIISS--QLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQF 299
+I + Q + A+ ++ +L KV Q C ++ NN
Sbjct: 734 SDALIETFKQGKLEKAAGCDMEQTLEISISGILSKVRQQAGQQC-----VDALSRNNAPL 788
Query: 300 -MVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRF 358
M SG+KG +N Q+ +GQ + G+R R+LP F P + GFV F
Sbjct: 789 IMANSGSKGLHINVAQMVACVGQQIIGGQRVPDGFQDRSLPHFHKNARQPASKGFVRNSF 848
Query: 359 MTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLI 418
+G+ P EFFFH ++GREGLIDTAVKT+ +GY+ R L+K LE L+ YD TVR S +++
Sbjct: 849 YSGLFPTEFFFHAISGREGLIDTAVKTAETGYMSRRLMKSLEDLSTQYDNTVRTSSGTIV 908
Query: 419 QVLYGEDGLD----------VTKRQYLTDKQFSFLEDNIKWICSYKVI---LNLLKKHPL 465
Q +G D LD V + T + + ++N + + ++V+ ++L K L
Sbjct: 909 QFQFGADKLDPVDMEGSAVPVQFDRTWTHAESTTWDNNERSLLPHEVLEVCTSMLDKEKL 968
Query: 466 SLALLLLLT---FKSSGKPNFIFSPHRT-KFTMDLLEQWYQLDDKARKKYRKKFKACPQP 521
L+ S + H + + +D + + + K R+ P P
Sbjct: 969 RYKRRRLVDNALLDYSDPTDEALDEHESARGFIDTIYSYVAERAQKMSKARELVGLDPDP 1028
Query: 522 LISTFQPDAHFGSISENLADSVVKYTK-GRTDASHVDKFYDMIFYKNLLSLANPGENVGV 580
D + S +L + + + + + + +F + + PG VG
Sbjct: 1029 -----SHDEDLSNASPDLKARLARVERVSKISLTTLQRFVKECLERYHKAHVEPGHAVGA 1083
Query: 581 LAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMP 640
+ AQSIGEP TQMTL TFHFAG M++T G+PR++EI+ A+K I TP + P L D
Sbjct: 1084 VGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEII-NASKNISTPVITCPLLNDK- 1141
Query: 641 KLEKKANRLAKS-MTRITMADVLEKVKIKEWL 671
+ +A R+ K + + + DVL+ ++ EW+
Sbjct: 1142 --QIEAARIVKGRIEKTYVIDVLKAIE-DEWV 1170
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 64/117 (54%), Gaps = 3/117 (2%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N + GIEAA I+ E+ +V A G+++DPRH+ L+AD MT G + + R G+
Sbjct: 1315 NSVMEARDVLGIEAARTTIVDEISSVMA--GMDIDPRHIQLLADVMTFKGEVLGITRFGL 1372
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNR 1009
++ S +Q +FE + + +A+ + D + S +++GQ GTG FQ+ R
Sbjct: 1373 SKMRESVLQLASFEKTPDHLFEAAAGMKTDRIEGVSECIIMGQTMSVGTGSFQVVRR 1429
>gi|45935329|gb|AAS79686.1| RNA polymerase II large subunit [Podocarpus macrophyllus]
Length = 1013
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 155/432 (35%), Positives = 225/432 (52%), Gaps = 62/432 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ G++QD ++ K++ RDTF+ + +MN++ +
Sbjct: 433 RAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL---MWWE 489
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR----HGELLSGILDKKQFGS 128
+ + + P I KP PLWTGKQV + +I PK +IR H E +G L
Sbjct: 490 DFDGKIPSPAILKPRPLWTGKQVFNLII----PKQINLIRYSAWHAESETGFL------- 538
Query: 129 TQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAK 188
DT V I GE+LSG L KK G++ L+H +W+ G + A LS
Sbjct: 539 -------TAGDTVVHIEKGEVLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLSHTQW 591
Query: 189 LFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISS 248
L +L + GF++G+ D + D ++IN+ A N +
Sbjct: 592 LVNYWLLQQGFSMGIGDTIA----DAATMEVINET----ISRAKNEV------------K 631
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQV----------CLPEGLIEPFPANNLQ 298
QL +A A Q A+ R ++++ N +NQV + L E +NNL+
Sbjct: 632 QLIKA-AQEKQLEAEPGR---TMMESFENRVNQVLNKARDDAGSSAQKSLSE---SNNLK 684
Query: 299 FMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRF 358
MV +G+KGS +N Q++ +GQ +EGKR GRTLP F + P + GFV+ +
Sbjct: 685 AMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFDGRTLPHFTKDDKGPESRGFVENSY 744
Query: 359 MTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLI 418
+ G+ PQEFFFH M GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +I
Sbjct: 745 LRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVI 804
Query: 419 QVLYGEDGLDVT 430
Q LYGEDG+D
Sbjct: 805 QFLYGEDGMDAV 816
>gi|356496595|ref|XP_003517152.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Glycine max]
Length = 1827
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 157/462 (33%), Positives = 237/462 (51%), Gaps = 65/462 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ G++QD ++ K++ RDTF+++ +MN++ +
Sbjct: 511 RAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFISKDVFMNIL---MWWE 567
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + + P I KP PLWTGKQV + +I PK +IR+ S + + GS G
Sbjct: 568 DFDGKVPAPAILKPEPLWTGKQVFNLII----PKQINLIRYSSWHS----ESERGSITPG 619
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
DT V I GELL+G L KK G+ GL+H +W+ G + A L L
Sbjct: 620 ------DTMVRIEKGELLTGTLCKKTLGTYSGGLIHVIWEEVGPDAARKFLGHTQWLVNY 673
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L + F++G+ D + D + IN+ + E + ++E
Sbjct: 674 WLLQNAFSIGIGDTIA----DASTMETINQT---------------ISAAKEKVKQLIRE 714
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQV----------CLPEGLIEPFPANNLQFMVE 302
A+ + A+ R S++D N +NQ + L E +NNL+ MV
Sbjct: 715 AHEK--KLEAEPGR---SMMDSFENRVNQTLNRARDDAGNSAQKSLSE---SNNLKAMVT 766
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
+G+KGS +N Q++ +GQ +EGKR RTLP F ++ P + GFV+ ++ G+
Sbjct: 767 AGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDLGPESRGFVENSYLRGL 826
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
PQEFFFH M GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +IQ LY
Sbjct: 827 TPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLY 886
Query: 423 GEDGLDVT--KRQYLT---------DKQFSFLEDNIKWICSY 453
GEDG+D ++Q L D+ F + D+ W +Y
Sbjct: 887 GEDGMDAVWIEKQMLDSLKMKKTEFDRVFRYEFDDENWKPTY 928
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/108 (47%), Positives = 72/108 (66%), Gaps = 3/108 (2%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
L SL GE +G +AAQSIGEP+TQMTLNTFH+AG NVTLG+PRLREI+ +A K IK
Sbjct: 1073 LQSLVASGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA-KRIK 1131
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISP 675
TPS+ + PD+ K +++A + ++ T+ V + ++ W + P
Sbjct: 1132 TPSLSVYLRPDVGKTKERAKSVQCALEYTTLRSVTQATEV--WYDPDP 1177
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 81/152 (53%), Gaps = 3/152 (1%)
Query: 868 LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 927
+L T+G+N+ + + + D+ + N + + GIEA R ++ E++ V + G V
Sbjct: 1325 MLDTEGVNLLAVMCHEDV-DVTRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDGSYV 1383
Query: 928 DPRHLSLVADYMTHSGTYVAMNRNGIRLNPSF-IQKMTFEMPLEKIRQASMQGREDSLRA 986
+ RHL+++ D MT+ G +A+ R+GI N + + + +FE ++ + A++ D LR
Sbjct: 1384 NYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDYLRG 1443
Query: 987 PSARVMLGQECRQGTGLFQLR-NREKKKKKVE 1017
+ +MLGQ GTG L N E K +E
Sbjct: 1444 VTENIMLGQLAPIGTGECALYLNDEMLKNAIE 1475
>gi|297798336|ref|XP_002867052.1| hypothetical protein ARALYDRAFT_491060 [Arabidopsis lyrata subsp.
lyrata]
gi|297312888|gb|EFH43311.1| hypothetical protein ARALYDRAFT_491060 [Arabidopsis lyrata subsp.
lyrata]
Length = 1839
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 152/452 (33%), Positives = 227/452 (50%), Gaps = 45/452 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ G++QD ++ K++ RDTF+ + +MN + +
Sbjct: 513 RAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNTL---MWWE 569
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + + P I KP PLWTGKQV + +I PK ++R+ T+ G
Sbjct: 570 DFDGKVPAPAILKPRPLWTGKQVFNLII----PKQINLLRYSAW---------HADTETG 616
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ DT V I GELL+G L KK G++ LVH +W+ G + A L L
Sbjct: 617 FI-TPGDTQVRIERGELLAGTLCKKTLGTSNGSLVHVIWEEVGPDAARKFLGHTQWLVNY 675
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L + GFT+G+ D + K + I+ A+ T + + Q QE
Sbjct: 676 WLLQNGFTIGIGDTIADSSTMEKINETISNAK----------------TAVKDLIRQFQE 719
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
P+ + +++ +++V N NNL+ MV +G+KGS +N
Sbjct: 720 KKLD-PEPGRTMTETFENRVNQVLNKARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINI 778
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q++ +GQ +EGKR GRTLP F + P + GFV+ ++ G+ PQEFFFH M
Sbjct: 779 SQMTACVGQQNVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 838
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVT-- 430
GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +IQ LYGEDG+D
Sbjct: 839 GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWI 898
Query: 431 KRQYLT---------DKQFSFLEDNIKWICSY 453
+ Q L D+ F + D+ W +Y
Sbjct: 899 ESQKLDSLKMKKSEFDRTFKYEIDDENWNPTY 930
Score = 138 bits (347), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 134/458 (29%), Positives = 217/458 (47%), Gaps = 63/458 (13%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
L SL PGE +G +AAQSIGEP+TQMTLNTFH+AG NVTLG+PRLREI+ +A K IK
Sbjct: 1075 LQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA-KRIK 1133
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCF 687
TPS+ + P+ K ++ A + ++ T+ V + ++ W + P + + F F
Sbjct: 1134 TPSLSVYLTPEASKSKEGAKTVQCALEYTTLRSVTQATEV--WYDPDPMSTI-IEEDFEF 1190
Query: 688 IPAHMYRDKTSVKPSKIIDHFERKFL-KELEVAIAKRAAQGLKNMNIEQSRDQMEDDV-- 744
+ ++ V P KI R L +E+ V A + +N+E +DD+
Sbjct: 1191 VRSYYEMPDEDVSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLE-----FDDDLTC 1245
Query: 745 --EDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSER 802
DD A + R+ + +DE E +Q E ED+ + +
Sbjct: 1246 IFNDD------NAQKLILRIRIMNDEGPKGE--LQD------------ESAEDDVFLKKI 1285
Query: 803 EEDDNTSNIGERFKIE-FRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNLFE 861
E SN+ + D VF+K V K +D++ F+
Sbjct: 1286 E-----SNMLTEMALRGIPDINKVFIKQ-------VRKSRFDEEGG------------FK 1321
Query: 862 EKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 921
E + +L T+G+N+ + + +D + N + + GIEA R ++ E++ V +
Sbjct: 1322 TSE-EWMLDTEGVNLLAVMCHED-VDPKRTTSNHLIEIIEVLGIEAVRRALLDELRVVIS 1379
Query: 922 VYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSF-IQKMTFEMPLEKIRQASMQGR 980
G V+ RHL+++ D MT+ G +A+ R+GI N + + + +FE ++ + A+
Sbjct: 1380 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAE 1439
Query: 981 EDSLRAPSARVMLGQECRQGTGLFQLR-NREKKKKKVE 1017
D LR + +MLGQ GTG +L N E K +E
Sbjct: 1440 TDCLRGVTENIMLGQLAPIGTGDCELYLNDEMLKNAIE 1477
>gi|425778039|gb|EKV16185.1| DNA-directed RNA polymerase [Penicillium digitatum PHI26]
gi|425781413|gb|EKV19382.1| DNA-directed RNA polymerase [Penicillium digitatum Pd1]
Length = 2075
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 191/648 (29%), Positives = 303/648 (46%), Gaps = 88/648 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + PK+G P+ IQD + + LS +D F RA + + L +L
Sbjct: 1157 RAEAMELMGVKNNLATPKNGEPIISAIQDFISAAYVLSSKDNFFDRASFTQI---CLYML 1213
Query: 73 NTEIR--TLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDK--KQFGS 128
E R PP++ KP +WTGKQV + +++ D V++ LD ++F
Sbjct: 1214 GPETRFDLPPPSVLKPQMMWTGKQVFN-ILMRPNSSDPVMVN--------LDAACREFKM 1264
Query: 129 TQYGLVHAV--WDTHVTIRHGELLSGILDKKQFGSTQY-GLVHAVWDTHGAEHAISLLSC 185
+ G + D + IR+ E++ G++DK GS + + + + G A ++
Sbjct: 1265 PKDGRPKDLDPNDGWLVIRNSEVMCGVMDKSTIGSGKKDNVFYIMLRDFGPPAAAEGMNR 1324
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEI 245
L+KL + +GF++G+ D+ + + ++ A + C+ E+
Sbjct: 1325 LSKLSARWFTNIGFSIGIGDVYPSAGLVQSKNDLVEAAY-----SQCD----------EV 1369
Query: 246 IS---SQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
I+ + E Y + + ++ Q +L KV C+ + + + N+ M
Sbjct: 1370 IAKYKAGTLEKYPGCDELQT-MENQISGILSKVRQQAGDECIKQ--LSKY--NSPLIMAT 1424
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
SG+KGS++N Q+ L+GQ + G+R RTLP F P + GFV F +G+
Sbjct: 1425 SGSKGSSINVSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNARQPPSKGFVRNSFFSGL 1484
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
+P EF FH M+GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR+S +++Q Y
Sbjct: 1485 EPPEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSSMYDDTVRNSSAAIVQFQY 1544
Query: 423 GEDGLDVT-----------KRQYL-------TDKQFSFLEDNIKWICSYKVILNLLKKHP 464
G+D LD R ++ + + S L I +C +L K
Sbjct: 1545 GDDKLDPVDMEGKAKPVHFDRTFIHSESTTYNNDERSLLPKEIMEVCE-----QMLSKER 1599
Query: 465 LSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLIS 524
L LL N + R+ +D E D ++ +K+ LIS
Sbjct: 1600 AKLNRKDLLG-------NDLAYMDRSDHGIDQFESARDFLDSIQEYVQKR----ADKLIS 1648
Query: 525 ---TFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVL 581
F P S+ + + +T TD + + F K + PG VG +
Sbjct: 1649 RGGDFDP-------SDQRSRKGLDHTGKLTDTT-LRAFITACLLKYKKAQVEPGHAVGAV 1700
Query: 582 AAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
AQSIGEP TQMTL TFHFAG M++T G+PR++EI+ A+K I TP
Sbjct: 1701 GAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEII-NASKEISTP 1747
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N+I G+EAA I+ E+ V +++DPRH+ L+AD MT+ G + + R G+
Sbjct: 1925 NNIMEAREVLGVEAARSTIVVEISEVMK--DMDIDPRHMQLLADVMTYKGEVLGITRFGL 1982
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
++ S +Q +FE + + A GR D + S +++G+ GTG ++
Sbjct: 1983 AKMRDSVLQLASFEKTADHLFDAGGLGRTDLIEGVSECIIMGKTVSLGTGAMEV 2036
>gi|83320424|gb|ABC02839.1| RNA polymerase II largest subunit, partial [Polychytrium
aggregatum]
Length = 1016
Score = 234 bits (596), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 149/429 (34%), Positives = 230/429 (53%), Gaps = 37/429 (8%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S+ +AE L V Q + P+ P G++QD + + K + RD FL++ MNL+
Sbjct: 431 SYETRAEIQELCMVPKQIVTPQKNGPCMGIVQDTLCAIRKFTRRDCFLSKDMVMNLL--- 487
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGS 128
+ + + + P I KP+PLWTGKQ++S +I P+ ++ H ++ D+K S
Sbjct: 488 MWVPDWDGTVPTPCIIKPIPLWTGKQMMSLII----PRINMVGYH---MAHPDDEKSDIS 540
Query: 129 TQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAK 188
DT V I GELL+GIL KK GS+Q G++H ++ HG E A +
Sbjct: 541 PG--------DTKVYIEDGELLTGILCKKTVGSSQNGIIHITFNEHGPEAAKGFFNSCQL 592
Query: 189 LFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISS 248
+ +L GF++G+ D + ++ K + I A+ A N +II+
Sbjct: 593 IVNYWLLHNGFSIGIGDTIADKQTMEKINQSIQSAK-----AEVN----------KIIAK 637
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGS 308
++ A +P ++ +++L++K N + NN++ MV +G+KGS
Sbjct: 638 AQRDELAVLPGMTIRL--SFEALVNKELNRARDMAGKSAERSLKEQNNVKQMVTAGSKGS 695
Query: 309 TVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFF 368
+N Q++ +GQ +EGKR R+LP F + SP + GFV+ ++ G+ PQEFF
Sbjct: 696 FINISQMTGCVGQQNVEGKRIPFGFKDRSLPHFTKDDHSPESRGFVENSYLRGLTPQEFF 755
Query: 369 FHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
FH M GREGLIDTAVKT+ +GY+QR LVK +E + V YD T+RDS ++IQ YGEDG+D
Sbjct: 756 FHAMGGREGLIDTAVKTAETGYIQRRLVKAMEDVMVRYDGTIRDSLGTVIQFCYGEDGMD 815
Query: 429 VTK--RQYL 435
K RQ L
Sbjct: 816 GAKVERQNL 824
>gi|397135963|gb|AFO11476.1| RNA polymerase I, partial [Dipodascopsis uninucleata]
Length = 871
Score = 233 bits (595), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 149/418 (35%), Positives = 217/418 (51%), Gaps = 39/418 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S L V Q + P+ P+ G++QD + K++ RDTFL + MN++Y +
Sbjct: 311 RAELSQLCAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTKRDTFLNFDQVMNILY---WVP 367
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N + P I KP PLWTGKQ+LS VI PK G L DK S +
Sbjct: 368 NWDGSIPHPAILKPKPLWTGKQLLSMVI----PK-------GINLQRFDDKNTLLSPR-- 414
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
D + I +GE++ G++DKK G+T GL+H + G S + +
Sbjct: 415 ------DNGMMIENGEIMYGVVDKKTVGATSGGLIHTIMREKGPTVTRDFFSGVQTVVNY 468
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + + R T I +A+R + +A L +P + L+E
Sbjct: 469 WLLHNGFSIGIGDTIADAKTMRNITNTIAQAKREVQQVILDAQANRLPPEPGMT---LRE 525
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
++ + + KV N NN++ MV SG+KGS +N
Sbjct: 526 SF--------------EQKVSKVLNTARDTAGRSAETSLTDMNNVKQMVVSGSKGSFINI 571
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EGKR S RTLP F + SP + GF++ ++ G+ PQEFFFH M
Sbjct: 572 SQMSACVGQQIVEGKRIPFGFSYRTLPHFTKDDYSPESRGFIENSYLRGLTPQEFFFHAM 631
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVT 430
GREG+IDTAVKT+ +GY+QR LVK LE ++V YD TVR+S ++Q +YGEDGLD T
Sbjct: 632 VGREGIIDTAVKTAETGYIQRRLVKALEDVSVQYDCTVRNSLGDILQFVYGEDGLDAT 689
>gi|45935327|gb|AAS79685.1| RNA polymerase II large subunit [Taxus canadensis]
Length = 1013
Score = 233 bits (595), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 153/437 (35%), Positives = 223/437 (51%), Gaps = 72/437 (16%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ G++QD ++ K++ RDTF+ + +MN++ +
Sbjct: 433 RAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL---MWWE 489
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR----HGELLSGILDKKQFGS 128
+ + + PTI KP PLWTGKQV + +I PK +IR H E +G +
Sbjct: 490 DFDGKIPAPTILKPRPLWTGKQVFNLII----PKQINLIRQSAWHAESETGFITPG---- 541
Query: 129 TQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAK 188
DT V I GE+LSG L KK G++ L+H +W+ G + A L
Sbjct: 542 ----------DTIVRIEKGEVLSGTLCKKTLGTSSGSLIHVIWEEVGPDAARKFLGHTQW 591
Query: 189 LFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISS 248
L +L + GF++G+ D + D ++IN E IS
Sbjct: 592 LVNYWLLQQGFSIGIGDTIA----DAATMEVIN----------------------ETISK 625
Query: 249 QLQEAYASIPQFRAQIDRQY-----KSLLDKVTNNINQV----------CLPEGLIEPFP 293
E I +A D+Q +++++ N +NQV + L E
Sbjct: 626 AKHEVKQLI---KAAQDKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSE--- 679
Query: 294 ANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGF 353
+NNL+ MV +G+KGS +N Q++ +GQ +EGKR GRTLP F + P + GF
Sbjct: 680 SNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFDGRTLPHFTKDDKGPESRGF 739
Query: 354 VDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDS 413
V+ ++ G+ PQEFFFH M GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S
Sbjct: 740 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNS 799
Query: 414 DLSLIQVLYGEDGLDVT 430
+IQ LYGEDG+D
Sbjct: 800 LGDVIQFLYGEDGMDAV 816
>gi|397135908|gb|AFO11449.1| RNA polymerase I, partial [Yamadazyma mexicana]
Length = 863
Score = 233 bits (595), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 148/419 (35%), Positives = 219/419 (52%), Gaps = 41/419 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S + V Q + P+ P+ G++QD + K++LRD+F+ + MN++Y I
Sbjct: 309 RAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDSFIEYDQVMNMLY---WIP 365
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ PP + KP PLWTGKQ+LS I PK + R LS
Sbjct: 366 TWDGVIPPPAVMKPKPLWTGKQLLSMAI----PKGIHLQRLESNLS-------------- 407
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
D + I GE++ G++DKK G+T GL+H V G + L S + K+
Sbjct: 408 ---CPNDNGMLIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPQVCAQLFSNIQKVVNY 464
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + + + T I +A+ E NA L+ +P + L+E
Sbjct: 465 WLLHNGFSIGIGDTIADSDTMKTVTTTIEEAKAKVQEIILNAQRNKLEPEPGMT---LRE 521
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
++ + + +V N + NN++ MV SG+KGS +N
Sbjct: 522 SF--------------EHNVSRVLNQARDTAGRSAEMSLKDLNNVKQMVVSGSKGSFINI 567
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EGKR + RTLP F + SP + GFV+ ++ G+ PQEFFFH M
Sbjct: 568 SQMSACVGQQIVEGKRIPFGFADRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAM 627
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTK 431
AGREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S +IQ +YGEDG+D T+
Sbjct: 628 AGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFVYGEDGIDGTQ 686
>gi|33326217|gb|AAQ08518.1| RNA polymerase II largest subunit [Amborella trichopoda]
Length = 1013
Score = 233 bits (595), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 146/418 (34%), Positives = 219/418 (52%), Gaps = 34/418 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ G++QD ++ K++ RDTF+ + +MN++ +
Sbjct: 433 RAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL---MWWE 489
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + + P I KP PLWTGKQV + +I PK +IR+ S ++ G
Sbjct: 490 DFDGKIPAPAILKPRPLWTGKQVFNLII----PKQINLIRYSAWHS---------ESESG 536
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ DT V I GELLSG L KK G++ L+H +W+ G + A L L
Sbjct: 537 FI-TPGDTCVRIERGELLSGTLCKKTLGTSSGSLIHVIWEEVGPDAARKFLGHTQWLVNY 595
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L + F++G+ D + K + I+KA+ E A L+ +P
Sbjct: 596 WLLQQAFSIGIGDTIADAATMEKINETISKAKNEVKELIKAAQEKQLEAEP--------- 646
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
+ F ++++ D ++ Q L E +NNL+ MV +G+KGS +N
Sbjct: 647 GRTMMESFENRVNQVLNKARDDAGSSA-QKSLSE-------SNNLKAMVTAGSKGSFINI 698
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q++ +GQ +EGKR + RTLP F + P + GFV+ ++ G+ PQEFFFH M
Sbjct: 699 SQMTACVGQQNVEGKRIPFGFNDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 758
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVT 430
GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +IQ LYGEDG+D
Sbjct: 759 GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAV 816
>gi|45935331|gb|AAS79687.1| RNA polymerase II large subunit [Ginkgo biloba]
Length = 1013
Score = 233 bits (594), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 146/428 (34%), Positives = 224/428 (52%), Gaps = 54/428 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ G++QD ++ K++ RDTF+ + +MN++ +
Sbjct: 433 RAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKVTKRDTFIEKDVFMNIL---MWWE 489
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + + PTI KP PLWTGKQV + +I P+ +IR+ S ++ G
Sbjct: 490 DFDGKIPSPTILKPRPLWTGKQVFNLII----PRQINLIRYSAWHS---------ESETG 536
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ DT V I GE+LSG L KK G++ L+H +W+ G + A L L
Sbjct: 537 FI-TPGDTCVRIEKGEVLSGTLCKKTLGTSSGSLIHVIWEEVGPDAARKFLGHTQWLVNY 595
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L + GF++G+ D + + I+KA+ + ++I + ++
Sbjct: 596 WLLQQGFSIGIGDTIADAATMETINETISKAK---------------NEVKQLIKAAQEK 640
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQV----------CLPEGLIEPFPANNLQFMVE 302
A + P +++++ N +NQV L E +NNL+ MV
Sbjct: 641 ALEAEPG---------RTMMESFENRVNQVLNKARDDAGSSAQRSLSE---SNNLKAMVT 688
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
+G+KGS +N Q++ +GQ +EGKR GRTLP F + P + GFV+ ++ G+
Sbjct: 689 AGSKGSFINISQMTACVGQQNVEGKRIPYGFDGRTLPHFTKDDNGPESRGFVENSYLRGL 748
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
PQEFFFH M GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +IQ LY
Sbjct: 749 TPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLY 808
Query: 423 GEDGLDVT 430
GEDG+D
Sbjct: 809 GEDGMDAV 816
>gi|328867419|gb|EGG15801.1| RNA polymerase II largest subunit [Dictyostelium fasciculatum]
Length = 1701
Score = 233 bits (594), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 147/418 (35%), Positives = 211/418 (50%), Gaps = 38/418 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE +M V Q + P+ P+ G++QD ++ + RDTF+ R MN++ + +
Sbjct: 475 RAEVIEIMMVPRQIVSPQSNRPVMGIVQDSLLGSRLFTKRDTFIERDLMMNIL---MWLP 531
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVI--INLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ + + PP IWKP LWTGKQ+ S +I INLT S DK++ S
Sbjct: 532 SWDGKIPPPAIWKPKKLWTGKQIFSLIIPKINLT----------RFTSTHNDKEKEKSEM 581
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLF 190
DT V I GEL+SGIL K+ GS ++H V + HG E + +
Sbjct: 582 AS------DTVVIIDQGELMSGILCKRSLGSANGSIIHVVQNEHGHEATRCFIDQTQTVV 635
Query: 191 TVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQL 250
+L GFT+G+ D + K I A+ E A + P
Sbjct: 636 NSWLISHGFTVGIGDTIADSATMAKVQNAITSAKTQVKELIIKAQSNQFECQP------- 688
Query: 251 QEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTV 310
+ + F +++R + D + Q L E +NN++ MV +G+KGS +
Sbjct: 689 --GKSMLESFEKEVNRVLNTARDDAGTSA-QKSLQE-------SNNVKAMVNAGSKGSFI 738
Query: 311 NTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFH 370
N Q+ +GQ +EGKR RTLP F + P + GFV+ ++ G+ PQEFFFH
Sbjct: 739 NISQMMACVGQQNVEGKRIPFGFQNRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFH 798
Query: 371 CMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
M GREGLIDTAVKTS +GY+QR LVK +E ++V YD TVR+S +IQ YGEDGLD
Sbjct: 799 AMGGREGLIDTAVKTSETGYIQRRLVKAMEDVSVRYDATVRNSLGDVIQFAYGEDGLD 856
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 75/113 (66%), Gaps = 5/113 (4%)
Query: 566 KNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKA 625
K + SLANPGE VG LAAQSIGEP+TQMTLNTFH+AG NVTLG+PRL+EI+ +A K
Sbjct: 1051 KFMTSLANPGEMVGALAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVA-KN 1109
Query: 626 IKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPH 678
+KTPS+ I PD+ + +KA + + TMA V +I PEP+
Sbjct: 1110 VKTPSLTIYLQPDIARDSEKAKSVQCQLEYTTMARVTAATEIY----YDPEPN 1158
Score = 73.6 bits (179), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 81/140 (57%), Gaps = 2/140 (1%)
Query: 868 LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 927
+L TDG+N+ + + + D ++ NDI + GIEA +++E++ V + G V
Sbjct: 1302 VLDTDGVNLLEVMSHPDV-DFSRTVSNDIVEIIQVLGIEAVRNALLKELRAVISFDGSYV 1360
Query: 928 DPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRA 986
+ RHL+++AD MT+ G +A+ R+GI R+ + + +FE +E + +A++ D++
Sbjct: 1361 NYRHLAMLADVMTYRGHLMAITRHGINRVESGPLMRCSFEETVEILMEAALFSETDNICG 1420
Query: 987 PSARVMLGQECRQGTGLFQL 1006
+ ++LGQ GTG F++
Sbjct: 1421 VTENIILGQLPPLGTGSFEV 1440
>gi|45935325|gb|AAS79684.1| RNA polymerase II large subunit [Thuja occidentalis]
Length = 1013
Score = 233 bits (594), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 150/433 (34%), Positives = 223/433 (51%), Gaps = 64/433 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ G++QD ++ K++ RDTF+ + +MN++ +
Sbjct: 433 RAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL---MWWE 489
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + + PTI KP PLWTGKQV + +I PK +IR+ ++ G
Sbjct: 490 DFDGKIPAPTILKPRPLWTGKQVFNLII----PKQINLIRYSAW---------HAESETG 536
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ DT V I GE++SG L KK G++ L+H +W+ G + A L L
Sbjct: 537 FI-TPGDTCVRIEKGEVISGTLCKKTLGTSSGSLIHVIWEEVGPDAARKFLGHTQWLVNY 595
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L + GF++G+ D + D ++IN E IS E
Sbjct: 596 WLLQQGFSIGIGDTIA----DAATMEVIN----------------------ETISKAKNE 629
Query: 253 AYASIPQFRAQIDRQY-----KSLLDKVTNNINQV----------CLPEGLIEPFPANNL 297
I +A D+Q +++++ N +NQV + L E +NNL
Sbjct: 630 VKQLI---KAAQDKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSE---SNNL 683
Query: 298 QFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGR 357
+ MV +G+KGS +N Q++ +GQ +EGKR GRTLP F + P + GFV+
Sbjct: 684 KAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFDGRTLPHFTKDDKGPESRGFVENS 743
Query: 358 FMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSL 417
++ G+ PQEFFFH M GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +
Sbjct: 744 YLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDV 803
Query: 418 IQVLYGEDGLDVT 430
IQ LYGEDG+D
Sbjct: 804 IQFLYGEDGMDAV 816
>gi|121706250|ref|XP_001271388.1| DNA-directed RNA polymerase III largest subunit, putative
[Aspergillus clavatus NRRL 1]
gi|119399534|gb|EAW09962.1| DNA-directed RNA polymerase III largest subunit, putative
[Aspergillus clavatus NRRL 1]
Length = 1449
Score = 233 bits (593), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 189/656 (28%), Positives = 304/656 (46%), Gaps = 104/656 (15%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + PK+G P+ IQD + + LS +D F R + + L +L
Sbjct: 530 RAEAMELMGVKNNLATPKNGEPIISAIQDFISAAYVLSSKDNFFDRRSFTQI---CLYML 586
Query: 73 NTEIR--TLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDK--KQFGS 128
E R PP+I KP +WTGKQV + +++ D V++ LD +++
Sbjct: 587 GPETRFDLPPPSILKPQMMWTGKQVFN-ILMRPNKDDPVMVN--------LDAACREYKP 637
Query: 129 TQYGLVHAV--WDTHVTIRHGELLSGILDKKQFGSTQY-GLVHAVWDTHGAEHAISLLSC 185
+ G + D + IR+ E++ G++DK GS + + + + +G A ++
Sbjct: 638 PKDGRPKDLDPNDGWLVIRNSEVMCGVMDKSTIGSGKKDNVFYIMLRDYGPPAAAEGMNR 697
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEI 245
L+KL + +GF++G+ D+ + R + +++ A A C+ E+
Sbjct: 698 LSKLSARWFTNMGFSIGITDVYPSEGLVRSKNELVESAY-----AQCD----------EV 742
Query: 246 IS---SQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
I+ + E Y + + ++ Q +L KV C+ + + + N+ M
Sbjct: 743 IAKYKAGTLEKYPGCDELQT-MENQLSGILSKVRQQAGDECIAQ--LSKY--NSPLIMAT 797
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
SG+KGS++N Q+ L+GQ + G+R RTLP F P + GFV F +G+
Sbjct: 798 SGSKGSSINVSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNARQPPSKGFVRNSFFSGL 857
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
+P EF FH M+GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR+S +++Q Y
Sbjct: 858 EPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSSRYDDTVRNSSDAIVQFQY 917
Query: 423 GEDGLDVT-----------KRQYLTDKQFSFLEDNIKWICS--YKVILNLLKKHPLSLAL 469
G+D LD R ++ + ++ D + +V +L K L
Sbjct: 918 GDDLLDPVDMEGKAKPVHFDRTFIHSESITYDNDERSLLPHEIMEVCEEMLSKERAKLVR 977
Query: 470 LLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLIS---TF 526
L+ N + R+ +D E D ++ K LIS F
Sbjct: 978 EDLMG-------NKLGYMDRSDHGIDQFESARDFLDSIQQYISTK----ADKLISRGGDF 1026
Query: 527 QPD--------AHFGSISEN-----LADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLAN 573
P H G ++E +A ++KY + + + H
Sbjct: 1027 DPSDERSQKGLNHTGKLTEKTLRTFIAACLLKYKRAQVEPGHA----------------- 1069
Query: 574 PGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
VG + AQSIGEP TQMTL TFHFAG M++T G+PR++EI+ A+KAI TP
Sbjct: 1070 ----VGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEII-NASKAISTP 1120
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 67/124 (54%), Gaps = 5/124 (4%)
Query: 886 LDLNKL--YVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSG 943
L +N L Y N++ M GIEAA II+E+ V +++DPRH+ L+AD MT+ G
Sbjct: 1288 LGVNGLHTYSNNVMEMREVLGIEAARVTIIQEISEVMK--DMDIDPRHMQLLADVMTYKG 1345
Query: 944 TYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTG 1002
+ + R G+ ++ S +Q +FE + + A GR D + S +++G+ GTG
Sbjct: 1346 EVLGITRFGLAKMRDSVLQLASFEKTADHLFDAGGAGRTDLIEGVSECIIMGKTVSLGTG 1405
Query: 1003 LFQL 1006
++
Sbjct: 1406 AMEV 1409
>gi|397135944|gb|AFO11467.1| RNA polymerase I, partial [Sugiyamaella smithiae]
Length = 868
Score = 232 bits (592), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 139/419 (33%), Positives = 218/419 (52%), Gaps = 39/419 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S L V Q + P+ P+ G++QD + K+S RD+F+ + MN+++ +
Sbjct: 311 RAELSQLCAVPLQIVSPQSNKPVMGIVQDTLCGIRKMSKRDSFIDYEQVMNILF---WVP 367
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N + R PP IWKP P+WTGKQ++S I D + ++ + + ++ K
Sbjct: 368 NWDGRIPPPAIWKPKPMWTGKQMVSLCI-----PDGIFLQRFDDGNPLISPK-------- 414
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
D + I GE++ G++DKK G+T GL+H + G + A + K+
Sbjct: 415 ------DNGMLISRGEIIYGVVDKKTVGATGGGLIHTIMREKGPKVAAGFFGNIQKVVNY 468
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + R I +A++ + +A L +P +
Sbjct: 469 WLLHNGFSIGIGDTIADGSTMRDIANTIAEAKQKVQDIIADAQNNTLSPEPGMT------ 522
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
R + +L++ +N + + NN++ MV SG+KGS +N
Sbjct: 523 -------LRESFEHNVSRVLNQARDNAGR----SAELSLKDLNNVKQMVVSGSKGSFINI 571
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+ +GQ +EGKR + R+LP F + SP + GFV+ ++ G+ PQEFFFH M
Sbjct: 572 SQMMACVGQQIVEGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAM 631
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTK 431
AGREGLIDTAVKT+ +GY+QR LVK LE + V YD T R+S +IQ +YGEDGLD T+
Sbjct: 632 AGREGLIDTAVKTAETGYIQRRLVKALEDIMVQYDGTTRNSLGDVIQFIYGEDGLDGTQ 690
>gi|303272485|ref|XP_003055604.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463578|gb|EEH60856.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 1694
Score = 232 bits (592), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 142/418 (33%), Positives = 221/418 (52%), Gaps = 35/418 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ ++QD +++ ++ RDTF+ + +MN++ + +
Sbjct: 492 RAEVQELMMVPKMIVSPQANKPVMAIVQDTLLASRLMTKRDTFIKKDVFMNIL---MWLE 548
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N + + P I KP PLWTGKQV + + +++ + + D F
Sbjct: 549 NWDGKVPKPAILKPEPLWTGKQVFTMFLPDVS------LTKQSAWAKDNDPHDF------ 596
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+V DT V I GEL++GIL KK GS GL+H +W+ G A +S + L
Sbjct: 597 ---SVEDTGVRIEKGELITGILCKKTLGSGGGGLIHVIWEEWGPTAARGFVSQVQWLLNY 653
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L + GFT+G+ D + I KA++ E A L+ P + +Q+
Sbjct: 654 WLLQHGFTIGISDTIADDGTMNSINDTITKAKQDVKEVIALAQTNALELQPGMT---MQQ 710
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
++ +++ +L+K +N +G ++ NN++ V +G+KGS +N
Sbjct: 711 SF----------EQKVNQILNKARDNAGNSA--QGSLDD--TNNVKMTVTAGSKGSFLNI 756
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+ +GQ +EGKR GR+LP F + P + GFV+ ++ G+ PQEFFFH M
Sbjct: 757 SQMIACVGQQNVEGKRIPFGFDGRSLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 816
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVT 430
GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +IQ LYGEDG+D T
Sbjct: 817 GGREGLIDTAVKTSETGYIQRRLVKAMEDIIVKYDGTVRNSAGDVIQFLYGEDGMDAT 874
Score = 130 bits (326), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 121/444 (27%), Positives = 206/444 (46%), Gaps = 52/444 (11%)
Query: 569 LSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKT 628
++LA PG+ +G +AAQSIGEP+TQMTLNTFHFAG NVTLG+PRL+EI+ +A K IKT
Sbjct: 1059 MALAPPGDGIGTVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINIA-KKIKT 1117
Query: 629 PSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCFI 688
PS+ + D+ A + S+ T+ V +I + + P + + K F+
Sbjct: 1118 PSLTVALRKDLAGDRAMAKNVQASLEYTTLHSVAAVSEI--YYDPDPTDTVIEEDK-EFV 1174
Query: 689 PAHMYRDKTSVKPSKIIDHFERKFL-KELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDD 747
A+ V P+++ R L +E+ V A + +N E +D + DD
Sbjct: 1175 RAYYEMPDEEVDPARMSPWVLRIELNREMMVDKKLLMADVAERIN-EDFQDDLSCIFNDD 1233
Query: 748 EGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDN 807
E + R+ + + E E+ A Q+ ++E +R E
Sbjct: 1234 NSE------KLIVRIRIMNSELEKEQGASQT----------------EDEVFLKRLEAQL 1271
Query: 808 TSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNLFEEKESKH 867
+++ R D VF+++ +Y KK+ W
Sbjct: 1272 LNSLALR---GIPDIKKVFIREANTMGLDPETETYAKKSE-W------------------ 1309
Query: 868 LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 927
+L T+G+N+ + + +D + N + + GIEA +++E++ V G V
Sbjct: 1310 MLDTEGVNLLEVMNHED-VDFTRTTSNHLIEVIQVLGIEAVRNALLKELRGVIEFDGSYV 1368
Query: 928 DPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRA 986
+ RHL+++ + MT+ G +++ R+GI R+ + + +FE ++ + +A+ D +
Sbjct: 1369 NYRHLAILVEVMTYRGHLMSITRHGINRVETGPLMRCSFEETVDILMEAAAFAERDRMSG 1428
Query: 987 PSARVMLGQECRQGTGLFQLRNRE 1010
S +MLGQ C GTG F L E
Sbjct: 1429 LSENIMLGQFCPLGTGEFGLHLNE 1452
>gi|33326203|gb|AAQ08511.1| RNA polymerase II largest subunit [Zamia muricata]
Length = 1013
Score = 232 bits (591), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 147/428 (34%), Positives = 225/428 (52%), Gaps = 54/428 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ G++QD ++ K++ RDTF+ + +MN++ +
Sbjct: 433 RAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL---MWWE 489
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + + PTI KP PLWTGKQV + +I P+ +IR+ S ++ G
Sbjct: 490 DFDGKIPSPTILKPRPLWTGKQVFNLII----PRQINLIRYSAWHS---------ESETG 536
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ DT V I GE+LSG L KK G++ L+H +W+ G + A L L
Sbjct: 537 FI-TPGDTVVRIEKGEVLSGTLCKKTLGTSSGSLIHVIWEEVGPDAARKFLGHTQWLVNY 595
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L + GF++G+ D + + I+KA+ N + +I Q+
Sbjct: 596 WLLQQGFSIGIGDTIADAATMETINETISKAK--------NEVN-------HLIQLAHQK 640
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQV----------CLPEGLIEPFPANNLQFMVE 302
A + P +++++ N +NQV + L E +NNL+ MV
Sbjct: 641 ALEAXPG---------RTMMESFENRVNQVLNKARDDAGSSAQKSLSE---SNNLKAMVT 688
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
+G+KGS +N Q++ +GQ +EGKR + GR+LP F + P + GFV+ ++ G+
Sbjct: 689 AGSKGSFINISQMTACVGQQNVEGKRIPFGLFGRSLPHFTRDDYGPESRGFVENSYLRGL 748
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
PQEFFFH M GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +IQ LY
Sbjct: 749 TPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLY 808
Query: 423 GEDGLDVT 430
GEDG+D
Sbjct: 809 GEDGMDAV 816
>gi|188532153|gb|ACD63088.1| RNA polymerase II largest subunit [Papaver orientale]
Length = 1010
Score = 232 bits (591), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 154/452 (34%), Positives = 230/452 (50%), Gaps = 45/452 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ G++QD ++ K++ RDTF+ + +MN++ +
Sbjct: 430 RAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL---MWWE 486
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + + PTI KP PLWTGKQV + +I PK ++R S + + G G
Sbjct: 487 DFDGKVPAPTILKPRPLWTGKQVFNLII----PKQINLLR----TSAWHSENETGFITPG 538
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
DT V I GELL+G L KK G++ L+H +W+ G + A L L
Sbjct: 539 ------DTQVRIERGELLTGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNY 592
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L + GF++G+ D + K I+KA+ + A L+ +P
Sbjct: 593 WLLQNGFSIGIGDTIADASTMEKINDTISKAKNEVKDLIRMAQEKSLEPEP--------- 643
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
+ F ++++ D ++ Q L E +NNL+ MV +G+KGS +N
Sbjct: 644 GRTMMESFENRVNQVLNKARDDAGSSA-QKSLSE-------SNNLKAMVTAGSKGSFINI 695
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q++ +GQ +EGKR RTLP F + P + GFV+ ++ G+ PQEFFFH M
Sbjct: 696 SQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 755
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVT-- 430
GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +IQ LYGEDG+D
Sbjct: 756 GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWI 815
Query: 431 KRQYLT---------DKQFSFLEDNIKWICSY 453
+ Q L DK + F D+ W +Y
Sbjct: 816 ESQKLDSLKMKKPEFDKVYRFEFDDDNWTPNY 847
>gi|222635876|gb|EEE66008.1| hypothetical protein OsJ_21959 [Oryza sativa Japonica Group]
Length = 994
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 140/331 (42%), Positives = 179/331 (54%), Gaps = 68/331 (20%)
Query: 264 IDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIE 323
+DR S L+ +T+ +N+ P GL +PFP N L M ++GAKG VN QIS LLGQ E
Sbjct: 732 LDRNMSSELNTLTSKVNKKVFPYGLRKPFPGNCLSLMTQTGAKGGLVNMTQISSLLGQQE 791
Query: 324 LEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAV 383
LEGKR M+SG+TLP F P++ S RAGGF+ RF+TG++PQE++FHCMAGREGL+DTAV
Sbjct: 792 LEGKRVPRMISGKTLPCFPPWDTSSRAGGFIGDRFLTGLRPQEYYFHCMAGREGLVDTAV 851
Query: 384 KTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFL 443
KTSRSGYLQRCL+K LE L V YD T YGEDG+DV K +L DK F L
Sbjct: 852 KTSRSGYLQRCLIKSLESLKVSYDHT----------FCYGEDGVDVLKTSFLDDK-FREL 900
Query: 444 EDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQL 503
DN + +L L H LL PN S K + +E
Sbjct: 901 SDN------RRALLGKLDSHNDKHLLL---------NPNGYISELPEKLIENAMEFL--- 942
Query: 504 DDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMI 563
K+++ + ++ + L+ + VKY
Sbjct: 943 --KSKRNEKGRYDIKEKELMKLLK----------------VKY----------------- 967
Query: 564 FYKNLLSLANPGENVGVLAAQSIGEPSTQMT 594
+ SL +PGE VGV+AAQSIGEPSTQMT
Sbjct: 968 ----ISSLVDPGEAVGVVAAQSIGEPSTQMT 994
Score = 142 bits (358), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 129/231 (55%), Gaps = 21/231 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA---- 68
+AEA +++ + QY+ P+ G + GLIQDH+I L+ DTFL+R EY LVY +
Sbjct: 397 RAEAINIVDANKQYIGPRSGDAVRGLIQDHIIGAVLLTKLDTFLSREEYNQLVYGSVLSS 456
Query: 69 ------------LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDK--VIIRHG 114
+ + + + +PP IWKP PLWTGKQV++T++ ++T + + G
Sbjct: 457 TRRSGQFGKKISIIMDDDALEPVPPAIWKPKPLWTGKQVITTILNHVTKGRPPFTVEKKG 516
Query: 115 ELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTH 174
+ L ++ + ++ + + EL+ G++DK QFG+ YG+VH V + +
Sbjct: 517 RIEKEYLIPEERNGDKVKTINPSEQV-LYVHDNELIKGMIDKAQFGN--YGIVHTVHELY 573
Query: 175 GAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARR 225
G E A LLS ++LFT+ LQ GFT GV D+L+ QE D R +I+ K+ +
Sbjct: 574 GPETAGVLLSSFSRLFTMVLQLHGFTCGVDDLLLSQESDMTREEILGKSEK 624
>gi|50310581|ref|XP_455310.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644446|emb|CAG98018.1| KLLA0F05071p [Kluyveromyces lactis]
Length = 1720
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 150/422 (35%), Positives = 219/422 (51%), Gaps = 47/422 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S L V Q + P+ P G++QD + K++LRDTF+ + +N++Y I
Sbjct: 498 RAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKMTLRDTFIELDQVLNMLY---WIP 554
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + P I KP+PLW+GKQVLS I N G L D F S +
Sbjct: 555 DWDGIIPTPAILKPVPLWSGKQVLSMAIPN-----------GIHLQRFDDGTTFLSPK-- 601
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
D + I G+++ G++DKK GS+ GL+H V G E L S + K+
Sbjct: 602 ------DNGMLIIDGKIIFGVVDKKTVGSSSGGLIHVVTREKGPEICARLFSNIQKVVNY 655
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARR----LGTEAACNALGLPLDTDPEIISS 248
+L GF++G+ D + ++ R+ T+ I A++ + EA N L
Sbjct: 656 WLLHNGFSIGIGDTIADEKTMREITEAIAVAKKKVEDVTKEAQANLL------------- 702
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGS 308
+ F + R DK + +V L + NN++ MV +G+KGS
Sbjct: 703 TAKHGMTLRESFEDNVVRYLNEARDKAGRSA-EVNLKD-------LNNVKQMVSAGSKGS 754
Query: 309 TVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFF 368
+N Q+S +GQ +EGKR A + RTLP F + SP + GFV+ ++ G+ PQEFF
Sbjct: 755 FINIAQMSACVGQQSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFF 814
Query: 369 FHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
FH M GREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S ++IQ +YGEDG+D
Sbjct: 815 FHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGNVIQFIYGEDGMD 874
Query: 429 VT 430
Sbjct: 875 AA 876
Score = 142 bits (359), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 132/451 (29%), Positives = 211/451 (46%), Gaps = 72/451 (15%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
L S+ +PGE VGVLAAQSIGEP+TQMTLNTFHFAG VT G+PRL+EIL +A K +K
Sbjct: 1054 LRSIVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVA-KNMK 1112
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNY------ 681
TPS+ + P+ ++KA + ++ T L+ V + + P+P
Sbjct: 1113 TPSLTVYLDPEYAADQEKAKEIRSAIEHTT----LKSVTVASEIYYDPDPRSTVIEDDEE 1168
Query: 682 --QMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQ 739
Q+ F + K +D ++ +L LE+ RAA K++ + Q ++
Sbjct: 1169 IIQLHFSLMDEET---------EKSLD-YQSPWLLRLEL---DRAAMTDKDLTMGQVGEK 1215
Query: 740 MEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERM 799
+++ ++D + V E+ E+ ++ +P+ +
Sbjct: 1216 IKETFKND--------------LFVIWSEDNAEKLIIRCRV---------IRDPKTLDAD 1252
Query: 800 SEREEDDNTSNIGERF--KIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPS 857
E EED I KI R V+D+ V YD+K +PS
Sbjct: 1253 VEAEEDHMLKKIENSMLEKITLRG-----VEDITR----VVMMKYDRK---------VPS 1294
Query: 858 NLFE-EKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREV 916
E K + +L+TDG+N++ + +D +++Y N + + GIEA + REV
Sbjct: 1295 ETGEYHKVPEWVLETDGVNLSEVMTVSG-VDGSRIYTNSFIDIMNVLGIEAGRAALYREV 1353
Query: 917 KNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQA 975
NV A G V+ RH++L+ D MT G +++ R+G R + + + +FE +E + +A
Sbjct: 1354 YNVIASDGSYVNYRHMALLVDVMTSQGFLMSVTRHGFNRADTGALMRCSFEETVEILFEA 1413
Query: 976 SMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
D R S V+LGQ GTG F +
Sbjct: 1414 GAAAELDDCRGVSENVILGQMAPIGTGAFDV 1444
>gi|45935333|gb|AAS79688.1| RNA polymerase II large subunit [Ephedra viridis]
Length = 1013
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 143/419 (34%), Positives = 219/419 (52%), Gaps = 34/419 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ G++QD ++ K++ RDTF+ + +MN++ +
Sbjct: 433 RAEILELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL---MWWE 489
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + + P I KP P+WTGKQV + +I PK ++R+ S ++ G G
Sbjct: 490 DFDGKVPAPAILKPRPIWTGKQVFNLII----PKQINLVRY----SAWHNESDRGHLTLG 541
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
DT V I GE+++G L KK G++ L+H +W+ G + A L L
Sbjct: 542 ------DTVVRIEKGEVITGTLCKKTLGASSGSLIHVIWEEVGPDAARKFLGHTQWLVNY 595
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L + GF++G+ D + + I A+ E + L+ +P
Sbjct: 596 WLLQQGFSMGIGDTIADATTMDTINETIQDAKIKVQELIEKYMAHKLEQEP--------- 646
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
+ F Q+++ D N+ Q L E +NNL+ MV +G+KGS +N
Sbjct: 647 GRTLLESFENQVNQVLNKARDDAGNSA-QRSLSE-------SNNLKAMVTAGSKGSFINI 698
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q++ +GQ +EGKR GRTLP F+ + P + GFV+ ++ G+ PQEFFFH M
Sbjct: 699 SQMTACVGQQNVEGKRIPYGFQGRTLPHFVKDDKGPESRGFVENSYLRGLTPQEFFFHAM 758
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTK 431
GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +IQ LYGEDG+D +
Sbjct: 759 GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDATVRNSLGDVIQFLYGEDGMDAVR 817
>gi|71027119|ref|XP_763203.1| DNA-directed RNA polymerase II largest subunit [Theileria parva
strain Muguga]
gi|68350156|gb|EAN30920.1| DNA-directed RNA polymerase II largest subunit, putative [Theileria
parva]
Length = 1681
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 145/438 (33%), Positives = 232/438 (52%), Gaps = 46/438 (10%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
+H +AE LM V Q + P+ P+ G++QD +++ +K + RDTFLTR E M+L+
Sbjct: 495 THETRAEVKHLMLVPKQIVSPQGNRPVMGIVQDSLLAVSKFTKRDTFLTRDELMSLL--- 551
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKV----IIRHGELLSGILDKK 124
+ I + + P I+ P LWTGKQV+S V++ + +IR G + LDK
Sbjct: 552 IWIPYWDGKLPQPAIFFPKNLWTGKQVIS-VLLTFNQSQGITNINLIRDGTIK---LDKD 607
Query: 125 QFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLS 184
++ D+ V IR E +SGI+ KK G + L+H +W G E L+
Sbjct: 608 NLNC-------SINDSRVIIRKNEHISGIICKKTVGCSSGSLIHILWHEAGPEKCRDFLT 660
Query: 185 CLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPE 244
L K+ + ++GFT+ DI + K ++I++K+++ + A L P
Sbjct: 661 TLQKVVNNWFLQIGFTVSCSDICCSESTLNKVSRILDKSKKEVQKLVLQAQKGKLKCQP- 719
Query: 245 IISSQLQEAYASIPQFRAQIDRQYKSLLDK----VTNNINQVCLPEGLIEPFPANNLQFM 300
L E+ F A+++++ ++ V +++N +NN+ M
Sbjct: 720 --GKSLFES------FEARVNKELNDAREQSGSIVASSLNL------------SNNILSM 759
Query: 301 VESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMT 360
V SG+KGST+N QI +GQ +EGKR R+LP F+ ++ P + GFV +++
Sbjct: 760 VNSGSKGSTINISQIIACVGQQNVEGKRIPFGFRDRSLPHFIKHDYGPESRGFVSNSYLS 819
Query: 361 GIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQV 420
G+ PQE FFH M GREG+IDTA KTS +GY+QR L+K +E + V YD T R+ + ++Q
Sbjct: 820 GLTPQEMFFHAMGGREGIIDTACKTSETGYVQRRLIKAMEDVMVQYDRTARNGNGEILQF 879
Query: 421 LYGEDGLDVTKRQYLTDK 438
LYGEDG+ +Y+ D+
Sbjct: 880 LYGEDGMGA---EYIEDQ 894
Score = 93.6 bits (231), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 64/86 (74%), Gaps = 4/86 (4%)
Query: 564 FYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMAT 623
F+K ++ANPGE VG +AAQSIGEP+TQMTLNTFHFAG NVTLG+PRL+E++ + T
Sbjct: 1068 FFK---AIANPGECVGAIAAQSIGEPATQMTLNTFHFAGVSSKNVTLGLPRLKELINVVT 1124
Query: 624 KAIKTPSMEIPFLPDMPKLEKKANRL 649
++TPS+ I P + K +++A +
Sbjct: 1125 N-VRTPSLTIYLDPSINKDQERAKEM 1149
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 85/152 (55%), Gaps = 2/152 (1%)
Query: 862 EKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 921
++ S+ +L TDG N+ + +D K + ND+ + +GIEAA R ++RE++ V +
Sbjct: 1313 DRVSQWVLDTDGCNLESVLPIT-CVDYTKTFSNDVSEIFHVFGIEAARRALLREIRAVIS 1371
Query: 922 VYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGR 980
G V+ RHLSL+ D MT G +++ R+GI R + + K +FE LE + A++ G
Sbjct: 1372 FDGAYVNYRHLSLLCDIMTQKGYLMSITRHGINRADRGPLIKCSFEETLETLLTAAVFGE 1431
Query: 981 EDSLRAPSARVMLGQECRQGTGLFQLRNREKK 1012
D L+ + V++GQ GTG F + E K
Sbjct: 1432 VDHLKGVTENVIVGQLSPYGTGAFDIMIDEVK 1463
>gi|77176709|gb|ABA64469.1| DNA-dependent RNA polymerase II largest subunit [Glaucocystis
nostochinearum]
Length = 1852
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 142/418 (33%), Positives = 222/418 (53%), Gaps = 37/418 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE + V Q + P+ P+ G++QD +++ K+++RDTF+ + MN++ L
Sbjct: 504 RAEVQEICLVPRQIISPQSNRPVMGIVQDTLMASQKMTIRDTFIEKDVVMNILMH----L 559
Query: 73 NTEIRTLP-PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQY 131
++ LP P I KP PLWTGKQ+ + + N+ +IR Q +
Sbjct: 560 DSFDGRLPIPAILKPRPLWTGKQLFTMFLPNVN-----LIRFC---------SQHPDNEV 605
Query: 132 GLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFT 191
+ + DT V I GELL+GI+ K+ G++ L+H +W+ HG + A S K+
Sbjct: 606 SDI-SPGDTKVIIEQGELLAGIVCKRTLGTSSGSLIHVIWNEHGHDIARVFFSMTQKVIN 664
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQ 251
+L VGF++G+ D + D + IN+ +GT A L LD + + Q
Sbjct: 665 NWLINVGFSIGIGDTIA----DEATMETINQ--HIGT-AKTRVQQLILDCQQNRL--ECQ 715
Query: 252 EAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVN 311
+ F +++++ + D + + P +NN++ MV SG+KGS +N
Sbjct: 716 PGRTLLESFENRVNKELNTARDNAGASAQKSLKP--------SNNVKAMVTSGSKGSFIN 767
Query: 312 TMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHC 371
Q+ +GQ +EGKR RTLP F + P + GFV+ ++ G+ PQEFFFH
Sbjct: 768 ISQMIACVGQQNVEGKRIPFGFRDRTLPHFHKNDYGPESRGFVENSYLRGLTPQEFFFHA 827
Query: 372 MAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
M GREGLIDTAVKTS +GY+QR L+K +E + V YD T+R+S +IQ +YGEDG+D
Sbjct: 828 MGGREGLIDTAVKTSETGYIQRRLIKAMEDVMVQYDSTLRNSIGDIIQFVYGEDGMDA 885
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/66 (65%), Positives = 55/66 (83%), Gaps = 1/66 (1%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
L ++ANPGE VG +AAQSIGEP+TQMTLNTFH+AG NVTLG+PRL+EI+ +A K +K
Sbjct: 1064 LQAIANPGEMVGAIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVA-KKVK 1122
Query: 628 TPSMEI 633
TPS+ +
Sbjct: 1123 TPSLVV 1128
Score = 76.6 bits (187), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 81/144 (56%), Gaps = 2/144 (1%)
Query: 864 ESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
E + +L T+G N+ + + + D + NDI + GIEA + ++E+++V +
Sbjct: 1314 EKEWVLDTEGCNLLEVMSCQDV-DHTRTTSNDIVEIIQVLGIEAVRQAALKELRDVISFD 1372
Query: 924 GIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGRED 982
G V+ RHL+ +AD MT+ G +++ R+GI R+ + + +FE +E + A++ D
Sbjct: 1373 GSYVNYRHLATLADVMTYRGHLMSITRHGINRVPTGAMMRCSFEETVEILMDAAVYAETD 1432
Query: 983 SLRAPSARVMLGQECRQGTGLFQL 1006
R+ + +MLGQ C+ GTG F L
Sbjct: 1433 HCRSVTENIMLGQLCQLGTGSFDL 1456
>gi|393247601|gb|EJD55108.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Auricularia delicata TFB-10046 SS5]
Length = 1775
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 158/445 (35%), Positives = 229/445 (51%), Gaps = 45/445 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S + V Q + P+ P+ G++QD + KL+LRDTFL N++ L +
Sbjct: 506 RAELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKLTLRDTFLDWHAVQNIL---LWVP 562
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + P I KP PLWTGKQ+LS I P+ I R + S
Sbjct: 563 DWDGTIPTPAILKPKPLWTGKQILSLAI----PRGINIARSSDPPSS------------- 605
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ + D + I +G++L G++DKK G+ Q GL+H V+ G E L + L +
Sbjct: 606 --NPLTDDGMLIENGDILYGVVDKKTVGAAQGGLIHVVFREKGPEVCRGLFTGLQTVVNY 663
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + + + I KAR + +A L P + +
Sbjct: 664 WLFHNGFSIGIGDTIADKGTMAYVKERIGKARANVQQLQDDAHMARLKAKPGMTIRE--- 720
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
F +++R+ D T Q L + NN++ MV +G+KGS +N
Sbjct: 721 ------TFEREVERELNQARDD-TGQSAQKSLKDD-------NNVKQMVTAGSKGSFINI 766
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EGKR RTLP F + SP A GFV+ ++ G+ PQEFFFH M
Sbjct: 767 SQMSVFVGQQSVEGKRIPFGFKHRTLPHFTKDDFSPEARGFVENSYLRGLTPQEFFFHAM 826
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD--VT 430
AGREGLIDTAVKT+ +GY+QR LVK LE +TV YD TVR+S LIQ +YGEDG+D
Sbjct: 827 AGREGLIDTAVKTAETGYIQRRLVKALEDVTVCYDGTVRNSLGDLIQFIYGEDGMDGAFI 886
Query: 431 KRQYLTDKQFSFLEDNIKWICSYKV 455
+RQ + SF DN ++ Y+V
Sbjct: 887 ERQTIE----SFHIDNKRFEVKYRV 907
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 121/457 (26%), Positives = 187/457 (40%), Gaps = 78/457 (17%)
Query: 566 KNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKA 625
K + S+ANPGE G LAAQSIGEP+TQMTLNTFH+AG NVTLG+PRL+EI+ +A
Sbjct: 1062 KFMQSVANPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVAAN- 1120
Query: 626 IKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHM------ 679
IKTPS + P++ +A + + T+ V V+I P+P
Sbjct: 1121 IKTPSHTVYLTPEVAADPNRAKTVQTDLAYTTLRTVTSAVEIF----YDPDPTATIIDED 1176
Query: 680 -NYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSR- 737
++ F IP K H + +L LE+ AK + L +M+ SR
Sbjct: 1177 RDFVEAFFAIPDEDVESKL---------HLQSPWLLRLELDRAKMLDRKL-DMSYVASRI 1226
Query: 738 -DQMEDDV----EDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEE 792
+ D+ DD + +G +D D DEED +
Sbjct: 1227 AENFMTDLFVIWSDDNSDKLVIRCRVVGSLDKDEDSRMDEEDVFYRQLENTMLNSVSLRG 1286
Query: 793 PEDEERMSEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNI--VHKYSYDKKNHMWC 850
E R+ ++D + + + +DS V VN I V Y K + C
Sbjct: 1287 VEGISRVFLMKQDKIVTRPDGKIE-NLKDSEWVLETTGVNLKTIMTVEGVDYSKTHSNSC 1345
Query: 851 KLLFLPSNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANR 910
+F +L + + + + R +++ + YVN
Sbjct: 1346 TEVF------------KVLGVEAARASLLKELRSVIEFDGSYVNY--------------- 1378
Query: 911 VIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPL 969
RHL+L+ D MT G+ +A+ R+GI R + + + +FE +
Sbjct: 1379 -------------------RHLALLCDLMTCRGSIMAITRHGINRADTGALMRCSFEETV 1419
Query: 970 EKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
E + A+ G +D + V+ GQ GTG F +
Sbjct: 1420 EILMDAAAIGEKDDCHGIAENVLFGQMAPMGTGAFDV 1456
>gi|145242160|ref|XP_001393726.1| DNA-directed RNA polymerase III subunit RPO31 [Aspergillus niger CBS
513.88]
gi|134078271|emb|CAK96852.1| unnamed protein product [Aspergillus niger]
Length = 1450
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 191/652 (29%), Positives = 305/652 (46%), Gaps = 96/652 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + PK+G P+ IQD + + LS +D F R + + L +L
Sbjct: 530 RAEAMELMGVKNNLATPKNGEPIISAIQDFISAAYILSSKDNFFDRRSFTQI---CLYML 586
Query: 73 NTEIR--TLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDK--KQFGS 128
+ R PP + KP LWTGKQV + +++ D V++ LD +QF +
Sbjct: 587 GPQTRFDLPPPAVLKPQMLWTGKQVFN-ILMRPNKDDPVLVN--------LDAACRQFKA 637
Query: 129 TQYGLVHAV--WDTHVTIRHGELLSGILDKKQFGSTQY-GLVHAVWDTHGAEHAISLLSC 185
+ G + D+ + IR+ E++ G++DK GS + + + + +G A ++
Sbjct: 638 PKDGTPRDLDPKDSWLVIRNSEVMCGVMDKSTIGSGKKDNVFYIMLRDYGPVAAAEGMNR 697
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEI 245
L++L + +GF++G+ D+ ++ R + ++ A A C+ E+
Sbjct: 698 LSRLSARWFTNMGFSIGITDVYPSEKLLRSKHDLVETAY-----AQCD----------EV 742
Query: 246 IS---SQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
I+ + E Y + + ++ Q +L KV C+ + + + N+ M
Sbjct: 743 IAKYKAGTLEKYPGCDELQT-MENQLSGILSKVRQQAGDECIAQ--LSKY--NSPLIMAT 797
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
SG+KGS++N Q+ L+GQ + G+R RTLP F P + GFV F +G+
Sbjct: 798 SGSKGSSINVSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNARQPPSKGFVRNSFFSGL 857
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
+P EF FH M+GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR+S +++Q Y
Sbjct: 858 EPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSTRYDDTVRNSSAAIVQFQY 917
Query: 423 GE---DGLDVTKRQ----------------YLTDKQFSFLEDNIKWICSYKVILNLLKKH 463
G+ D LD+ + Y D++ S L I IC +L K
Sbjct: 918 GDDKLDPLDMEGKAKPVHFDRTFIHAESTTYKNDER-SLLPAEIMEICE-----EMLSKE 971
Query: 464 PLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQ-LDDKARKKYRKKFKACPQPL 522
L L+ + + + D LE Q + KA K + P
Sbjct: 972 RSKLVRKDLMGNELGYMDRSDHGVDQFESARDFLESIQQYVATKADKLISRGGDIDPNDE 1031
Query: 523 ISTFQPDAHFGSISEN-----LADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGEN 577
S + H G ++E ++ ++KY K + +A H
Sbjct: 1032 RSQ-KGLNHTGKLTERTLRTFISSCLMKYKKAQVEAGHA--------------------- 1069
Query: 578 VGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
VG + AQSIGEP TQMTL TFHFAG M++T G+PR++EI+ A+K I TP
Sbjct: 1070 VGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEII-NASKEISTP 1120
Score = 66.2 bits (160), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 3/115 (2%)
Query: 893 VNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNG 952
N++ M GIEAA I++E+ V +++DPRH+ L+AD MT+ G + + R G
Sbjct: 1297 TNNVMEMRDVLGIEAARTTIVQEISEVMK--DMDIDPRHMQLLADVMTYKGEVLGITRFG 1354
Query: 953 I-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+ ++ S +Q +FE + + A GR D + S +++G+ GTG ++
Sbjct: 1355 LAKMRDSVLQLASFEKTADHLFDAGGAGRSDLIEGVSECIIMGKTVSLGTGAMEV 1409
>gi|12642612|gb|AAK00310.1|AF315820_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Glaucosphaera
vacuolata]
Length = 1746
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 148/420 (35%), Positives = 213/420 (50%), Gaps = 45/420 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ G++QD ++ + RDTF+ + MNL+ L
Sbjct: 484 RAEVMQLMMVPRCIVSPQGNKPVMGIVQDTLVGTMLFTQRDTFMEKDLVMNLL---LHFR 540
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ PP I KP LWTGKQ+ S ++ D ++R S D
Sbjct: 541 GWDGVIPPPAILKPRQLWTGKQLFSMIL-----PDVNLVR----FSNTHDDDD------- 584
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ DT V I GELLSG +DK+ GS LVH W HG E A L+S + L
Sbjct: 585 -IENAGDTKVLISRGELLSGTVDKRTVGSAANSLVHVTWKEHGPEGACDLISNIQTLVNH 643
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKAR----RLGTEAACNALGLPLDTDPEIISS 248
+L + GF++G+ D + ++ +IINKA+ RL +A L
Sbjct: 644 WLLQRGFSIGIGDTIADEQTRFNVIEIINKAKEEVKRLVRKAQEGEL------------- 690
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGS 308
QL + F +++ DK ++ + L NN++ MV +G+KGS
Sbjct: 691 QLLPGKTMMESFETGVNKVLNGARDKSGSDAQKSLLK--------TNNIKRMVNAGSKGS 742
Query: 309 TVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFF 368
+N QI +GQ +EGKR + RTLP F+ ++ P + GFV+ ++ G+ EFF
Sbjct: 743 FINISQICACVGQQNVEGKRISYGFRRRTLPHFVLDDLGPESRGFVENSYLRGLTATEFF 802
Query: 369 FHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
FH M GREGLIDTAVKTS +GY+QR L+K LE + V YD TVR+S ++Q LYGEDG+D
Sbjct: 803 FHAMGGREGLIDTAVKTSETGYIQRRLIKALEDVMVKYDGTVRNSTGLIVQFLYGEDGMD 862
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 62/94 (65%), Gaps = 1/94 (1%)
Query: 574 PGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEI 633
PGE +G +A QSIGEP+TQMTLNTFHFAG NVTLG+PRL+EI+ +A K KTPS+ +
Sbjct: 1078 PGEMIGAVAPQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVA-KHCKTPSLTV 1136
Query: 634 PFLPDMPKLEKKANRLAKSMTRITMADVLEKVKI 667
+ + ++A ++ + T+ V + +I
Sbjct: 1137 YLRGEAARDAERAKQVQAELQHTTLNHVTQSTEI 1170
Score = 80.1 bits (196), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 83/154 (53%), Gaps = 2/154 (1%)
Query: 864 ESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
E + +L TDG N+ + ++ + D + ND+ M T GIE ++ E++ V +
Sbjct: 1327 EKEWVLDTDGTNLLAVMSHKDV-DYTRTVSNDVVEMFVTLGIEGVRAALLNEIRGVISFD 1385
Query: 924 GIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGRED 982
G V+ RHL+++AD MT G +++ R+GI R+ + + +FE + + +A+M G D
Sbjct: 1386 GAYVNYRHLAILADIMTCRGHIMSITRHGINRVETGALMRCSFEETADILLEAAMYGEVD 1445
Query: 983 SLRAPSARVMLGQECRQGTGLFQLRNREKKKKKV 1016
++ + +MLGQ GTG F L EK K +
Sbjct: 1446 DMKGVAENIMLGQMAPVGTGEFGLLLNEKALKNL 1479
>gi|397135965|gb|AFO11477.1| RNA polymerase I, partial [Lipomyces starkeyi]
Length = 794
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 148/418 (35%), Positives = 218/418 (52%), Gaps = 39/418 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE + + V Q + P+ P+ G++QD + KL+ RD FLT + MN++Y +
Sbjct: 310 RAELTQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKLTKRDNFLTFDQVMNVLY---WVP 366
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N + P I KP PLWTGKQ+ S I PK + R+ DK S
Sbjct: 367 NWDGVIPQPAIQKPKPLWTGKQMFSMAI----PKGINLQRYD-------DKNTLLS---- 411
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
V D + I +GE++ GI+DKK G+T GL+H + G A + +
Sbjct: 412 ----VRDNGMMIENGEVMFGIVDKKTVGATSGGLIHTIMREKGPIAARDFIGGTQTVVNY 467
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + + R T I +A+R + +A L +P + L+E
Sbjct: 468 WLLHNGFSIGIGDTIADAKTMRNITNTIAQAKREVQQIILDAQANRLPPEPGMT---LRE 524
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
++ + + KV N ANN++ MV +G+KGS +N
Sbjct: 525 SF--------------EQKVSKVLNTARDTAGRSAETSLTEANNVKQMVVAGSKGSFINI 570
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EGKR S RTLP F + SP + GF++ ++ G+ PQEFFFH M
Sbjct: 571 SQMSACVGQQMVEGKRVPFGFSYRTLPHFTKDDYSPESRGFIENSYLRGLTPQEFFFHAM 630
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVT 430
AGREG+IDTAVKT+ +GY+QR LVK LE ++V YD TVR+S ++Q +YGEDGLD T
Sbjct: 631 AGREGIIDTAVKTAETGYIQRRLVKALEDVSVKYDGTVRNSLGDILQFVYGEDGLDAT 688
>gi|12642616|gb|AAK00312.1|AF315822_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Monoblepharis
macrandra]
Length = 1603
Score = 231 bits (589), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 154/434 (35%), Positives = 225/434 (51%), Gaps = 47/434 (10%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S+ +AE +M V Q + PK P+ G++QD + K ++RD FL+R MN++
Sbjct: 430 SYETRAEIMEIMRVPRQIISPKHNQPVMGIVQDTLCGIRKFTIRDNFLSRDMVMNIL--- 486
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVI--INLTPKDKVIIRHGELLSGILDKKQF 126
+ + + + P I KP+PLWTGKQ++S I INL S +
Sbjct: 487 MWVEDWDGVIPLPAIVKPVPLWTGKQMMSLAIPDINLVG-----------FSATHPDDEK 535
Query: 127 GSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCL 186
G G DT V I G +LSG + KK GS+ G++H + + HG + A +
Sbjct: 536 GDMSVG------DTKVIIEGGTILSGTMCKKTVGSSAGGVIHTIMNEHGPDAAKKFFNGT 589
Query: 187 AKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEII 246
K+ +L GF++G+ D + + T I KA+ E NA LD +P +
Sbjct: 590 QKIVNYWLLHNGFSVGIGDTIADGVTMQSITDTIKKAKADVAEIIKNAQANKLDAEPGMT 649
Query: 247 SSQLQEAYASIPQFRAQID---RQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVES 303
+ E+ + +A+ D + KSL K+ NN+ Q MV +
Sbjct: 650 VRETFESKVNKVLNKARDDAGKKAEKSL--KIYNNVKQ------------------MVIA 689
Query: 304 GAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQ 363
G+KGS +N Q++ +GQ +EGKR RTLP F + SP + GFV+ ++ G+
Sbjct: 690 GSKGSFINISQMTACVGQQNVEGKRIPYGFRYRTLPHFTKDDHSPESRGFVENSYLRGLS 749
Query: 364 PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYG 423
PQEFFFH M GREGLIDTAVKT+ +GY+QR LVK LE + V YD TVR+S ++Q +YG
Sbjct: 750 PQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGHVVQFVYG 809
Query: 424 EDGLDVT--KRQYL 435
EDG+D T +RQ L
Sbjct: 810 EDGMDATGVERQQL 823
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/59 (69%), Positives = 50/59 (84%), Gaps = 1/59 (1%)
Query: 573 NPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSM 631
NP E VG +AAQSIGEP+TQMTLNTFHFAG G NVTLG+PRL+EI+ +AT ++TPS+
Sbjct: 1005 NPAEMVGTIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKEIINVATN-LRTPSL 1062
Score = 76.6 bits (187), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 76/146 (52%), Gaps = 2/146 (1%)
Query: 862 EKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 921
E+ +H+L+TDGIN+ + + D + Y N + + GIEA +++E++ V
Sbjct: 1250 EQAQEHILETDGINLREVMAVEEV-DFTRTYSNAPLEIYAVLGIEAGRAALLKEIRKVIE 1308
Query: 922 VYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGR 980
G V+ RHL+L+ D M G +++ R+GI R + + +FE +E + A+ G
Sbjct: 1309 FDGSYVNYRHLALLVDVMCQKGGLMSITRHGINRTENGALARSSFEETVEILMDAAGSGE 1368
Query: 981 EDSLRAPSARVMLGQECRQGTGLFQL 1006
D R S ++LGQ GTG F +
Sbjct: 1369 TDICRGVSENIILGQLAPLGTGEFDV 1394
>gi|356538329|ref|XP_003537656.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Glycine max]
Length = 1827
Score = 231 bits (589), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 146/417 (35%), Positives = 218/417 (52%), Gaps = 34/417 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ G++QD ++ K++ RDTF+T+ +MN++ +
Sbjct: 511 RAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMNIL---MWWE 567
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + + P I KP PLWTGKQV + +I PK +IR+ S + + GS G
Sbjct: 568 DFDGKVPAPAILKPEPLWTGKQVFNLII----PKQINLIRYSSWHS----ESERGSITPG 619
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
DT V I GELL+G L KK G++ L+H +W+ G + A L L
Sbjct: 620 ------DTMVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNY 673
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L + F++G+ D + + I+ A+ + A L+ +P
Sbjct: 674 WLLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIREAQEKKLEAEP--------- 724
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
+ F ++++ D N+ Q L E +NNL+ MV +G+KGS +N
Sbjct: 725 GRTMMDSFENRVNQTLNRARDDAGNSA-QKSLSE-------SNNLKAMVTAGSKGSFINI 776
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q++ +GQ +EGKR RTLP F + P + GFV+ ++ G+ PQEFFFH M
Sbjct: 777 SQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 836
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +IQ LYGEDG+D
Sbjct: 837 GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDA 893
Score = 112 bits (281), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 130/483 (26%), Positives = 208/483 (43%), Gaps = 113/483 (23%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
L SL GE +G +AAQSIGEP+TQMTLNTFH+AG NVTLG+PRLREI+ +A K IK
Sbjct: 1073 LQSLVASGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA-KRIK 1131
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCF 687
TPS+ + D+ K +++A + ++ T+ V + ++ W + P+P
Sbjct: 1132 TPSLSVYLRSDVGKTKERAKSVQCALEYTTLRSVTQATEV--WYD--PDP---------- 1177
Query: 688 IPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDD 747
+ + D VK ++E + + EVA+ K + L+ IE +R+ M D
Sbjct: 1178 MSTIIEEDADFVK-----SYYE---MPDEEVALEKISPWLLR---IELNREMMVD----- 1221
Query: 748 EGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDN 807
L D++ +K+N E D+D ++ DDN
Sbjct: 1222 ---------KKLSMADIA--------------EKINLEFDDD---------LTCIFNDDN 1249
Query: 808 TSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNLFEEKESKH 867
+ R +I ++ ++D + ++ K + SN+ E
Sbjct: 1250 AEKLILRIRIMNDEAPKGEIQDESAEDDVFLKK--------------IESNMLTEMT--- 1292
Query: 868 LLKTDGINVNFISQYR-HLLDLNKLYVNDIHYMASTYGIEA----------ANRVIIREV 916
L IN FI + D N+ + + +M T G+ A R +
Sbjct: 1293 LRGIPDINKVFIKNTKVQKFDENQGFKPNEEWMLDTEGVNLLAVMCHEDVDATRTTSNHL 1352
Query: 917 KNVFAVYGIE--------------------VDPRHLSLVADYMTHSGTYVAMNRNGIRLN 956
V V GIE V+ RHL+++ D MT+ G +A+ R+GI N
Sbjct: 1353 IEVIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRN 1412
Query: 957 PSF-IQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLR-NREKKKK 1014
+ + + +FE ++ + A++ D LR + +MLGQ GTG L N E K
Sbjct: 1413 DTGPMMRCSFEETVDILLDAAVYAETDYLRGVTENIMLGQLAPIGTGECALYLNDEMLKN 1472
Query: 1015 KVE 1017
+E
Sbjct: 1473 AIE 1475
>gi|161527856|ref|YP_001581682.1| bifunctional DNA-directed RNA polymerase subunit A'/A''
[Nitrosopumilus maritimus SCM1]
gi|160339157|gb|ABX12244.1| DNA-directed RNA polymerase subunit A' [Nitrosopumilus maritimus
SCM1]
Length = 1263
Score = 231 bits (589), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 203/654 (31%), Positives = 312/654 (47%), Gaps = 109/654 (16%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V Q + P+ G P+ G ++D V L+ DT LT E+ NL A+
Sbjct: 476 RAEAILLMRVQDQLISPRYGGPIIGALRDFVTGAYLLTKDDTVLTVQEFSNL---AMLGG 532
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
T+ P T K P +TGKQ+ S + PKD +++ K G +
Sbjct: 533 YTDPLPKPGTKTKDGPAYTGKQLFSLFL----PKD-----FNYVITSKWSKGTKGQAK-- 581
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQ-YGLVHAVWDTHGAEHAISLLSCLAKLFT 191
V I++GEL+SG++DK G+ + ++H + +G S L+ + +
Sbjct: 582 --------DVVIKNGELISGVIDKSSIGAEEPESVLHRIAKDYGNAVGKSFLNSILIMVK 633
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQ 251
++ GF+ G D++V D+ + +I++ + GT + L TD + L+
Sbjct: 634 QFITHYGFSYGYGDLIVP---DKDKQQILDDIQ--GTYDIVSDL-----TD-QYKKGTLK 682
Query: 252 EAYASIPQ--FRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
P+ A I + DK ++ N CLP N + M +GA+GS+
Sbjct: 683 LTRGMKPEEALEAYIVNELGKARDKAGSSAND-CLPAD-------NAGKIMATTGARGSS 734
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q++ LGQ G R + R L + ++ +P A GFV + G+ EFFF
Sbjct: 735 LNVGQMAGALGQQSRRGNRLHEGYNNRALTHYQEHDDNPDAHGFVKSNYREGLSALEFFF 794
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H M GREGL+DTAV+T +SGY+QR L+ LE + + YD TVRD ++Q LYGEDG+DV
Sbjct: 795 HAMGGREGLVDTAVRTQQSGYMQRRLINALEHIRLEYDGTVRDPHGHIVQFLYGEDGIDV 854
Query: 430 TKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPHR 489
K +D +F + + I S K+I SGK
Sbjct: 855 QK----SDHGEAF--NPSRLIESQKII--------------------DSGK--------- 879
Query: 490 TKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGS-ISENLADSVVKYTK 548
K T + +E KKY K F P ++ DA S +S++ ++V K K
Sbjct: 880 -KATKEEIETLA-------KKYTKTF----NPRLTKLVTDALQNSELSKDGVEAVCK--K 925
Query: 549 GRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
G ++ Y + PG+ VG++ AQSIGEP TQMTL TFHFAG + NV
Sbjct: 926 G------------LLLYNK--AKVEPGQAVGIITAQSIGEPGTQMTLRTFHFAGIKERNV 971
Query: 609 TLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVL 662
TLG+PRL E L+ A K TP+M+I + K +KA +A+++ + ++ ++
Sbjct: 972 TLGLPRLIE-LVDARKKPVTPTMDIYLDDESKKSREKAIEVARNVLQTKVSALI 1024
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 80/154 (51%), Gaps = 2/154 (1%)
Query: 862 EKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 921
+K+ + +++T G NV + + + + D + N++ +A T GIEAA +I E+ +
Sbjct: 1111 QKDDEWVIQTTGSNVAKVLEVKGI-DKRNVRTNNVFEIAGTLGIEAARNALINELNSTLE 1169
Query: 922 VYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIR-LNPSFIQKMTFEMPLEKIRQASMQGR 980
G+EVD R++ LVAD M G + R+GI S + + FE+ + I A++ G
Sbjct: 1170 DQGLEVDNRYIMLVADLMCSRGYMQQIGRHGIAGTKDSVLARAAFEITVPTIAHAALGGE 1229
Query: 981 EDSLRAPSARVMLGQECRQGTGLFQLRNREKKKK 1014
+ L+ + V++G G+G L + KKK
Sbjct: 1230 IEQLKGITENVIVGSNIPIGSGTVDLYMQVSKKK 1263
>gi|322696737|gb|EFY88525.1| DNA-directed RNA polymerase III largest subunit [Metarhizium
acridum CQMa 102]
Length = 1017
Score = 231 bits (589), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 205/740 (27%), Positives = 322/740 (43%), Gaps = 109/740 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+ EA LM V + PK G P+ QD + + LS +D F R + + L
Sbjct: 94 RTEAMSLMGVKHNLITPKSGEPIIAATQDFITAAYLLSYKDRFFDRKAFTTICMHMLDGR 153
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVL---------STVIINLTPKDK-VIIRHGELLSGILD 122
N ++ PP I P LWTGKQ+ S V++NL + K + R G+ +D
Sbjct: 154 N-QLDLPPPAIIVPKTLWTGKQIFNVLMRPNNRSPVMVNLDARCKSCVTRPGQYPD--MD 210
Query: 123 KKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQY-GLVHAVWDTHGAEHAIS 181
D + +R+ +++ G +DK G + + + + +G + A+S
Sbjct: 211 PN--------------DGWLVVRNSQVMCGQMDKSTVGPGKKDSIFYVILRDYGPDEAVS 256
Query: 182 LLSCLAKLFTVYLQRVGFTLGVRDIL----VRQERDRKRTKIINKARRLGTEAACNALGL 237
++ LAKL YL GF++GV D+ +R+E D + K + T +L
Sbjct: 257 AMNRLAKLCARYLTNRGFSIGVGDVYPTASLRKEIDHLVSAAYKKCDNIITTFQAGSLEK 316
Query: 238 PLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNL 297
D E ++ +L KV + C I +N
Sbjct: 317 APGCDME-----------------QTLENSISGVLSKVRQQAGEHC-----INTLSRHNA 354
Query: 298 QF-MVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDG 356
M +SG+KGS +N Q+ L+GQ + G+R R+LP F P + GFV
Sbjct: 355 PLIMAKSGSKGSDINVAQMVSLVGQQIIGGQRVPDGFQDRSLPHFHKNARQPSSKGFVKN 414
Query: 357 RFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLS 416
F + + P EF FH ++GREGL+DTAVKT+ +GY+ R L+K LE L+V YD TVR S +
Sbjct: 415 SFYSALLPTEFLFHSISGREGLVDTAVKTAETGYMSRRLMKSLEDLSVKYDNTVRTSGGN 474
Query: 417 LIQVLYGEDGLDV----------------TKRQYLT--DKQFSFLEDNIKWICSYKVILN 458
++Q +G D LD T + LT D + S + I IC +L
Sbjct: 475 IVQFQFGADNLDPADMEGAGTPVQFHRTWTHAESLTRDDDEPSLMPHEIGVICDS--VLE 532
Query: 459 LLKKHPLSLALLLLLTFKSSGKPNFIFSPHRT--KFTMDLLEQWYQLDDKARKKYRKKFK 516
+ + LL ++ H + +F + L + RK
Sbjct: 533 PYRGRYVRKGLLHNEELNYEDDSDYAIDEHESGRRFLKSIKSYIDGLASRLRKVR----- 587
Query: 517 ACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGE 576
I+ +Q + +++ D K A+ + F + K + PG
Sbjct: 588 -----TIAGYQGNTPIRETAQDHVDRTAKVA-----ATTLRLFIRLCLDKFTKAHVEPGH 637
Query: 577 NVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFL 636
VG + AQSIGEP TQMTL TFHFAG M++T G+PR+ EI+ A+KAI TP + P L
Sbjct: 638 PVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRINEII-NASKAISTPVITCPLL 696
Query: 637 PDMPKLEKKANRLAKS-MTRITMADVLEKVKIKEW--------LEISPEPHMNYQMKFC- 686
K + +A ++ K+ + + ++D+L +++ EW +++ + N Q C
Sbjct: 697 ---NKWQIEAAKVVKARIEKTYISDILCFIEV-EWDSKSGHIVMQVDTDTLANMQAGVCV 752
Query: 687 FIPAHMYRD--KTSVKPSKI 704
F A D K V+P I
Sbjct: 753 FDVAQAICDQRKLKVRPEDI 772
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 889 NKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAM 948
++ N + GIEAA I E+ V GI D RH+ L+AD MT+ G + +
Sbjct: 861 TQVRTNSVMECVQILGIEAARTTIANEIAEVMGYMGI--DLRHMQLLADVMTYKGEVLGI 918
Query: 949 NRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
R G+ + S + +FE + + A + D + S ++LGQ GTG F++
Sbjct: 919 TRFGLSKTRGSVLHLASFEKTADHLFDAVAGMKTDRIEGVSESIILGQTISVGTGGFEV 977
>gi|225459758|ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
vinifera]
Length = 1848
Score = 231 bits (589), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 155/459 (33%), Positives = 233/459 (50%), Gaps = 59/459 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ G++QD ++ K++ RDTF+ + +MN++ +
Sbjct: 511 RAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL---MWWE 567
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR----HGELLSGILDKKQFGS 128
+ + + P I KP PLWTGKQV + +I PK ++R H E +G +
Sbjct: 568 DFDGKIPAPAILKPRPLWTGKQVFNLII----PKQINLLRTSAWHSESETGFITPG---- 619
Query: 129 TQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAK 188
DT V I GELL+G L KK G++ L+H +W+ G + A L
Sbjct: 620 ----------DTQVRIEKGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQW 669
Query: 189 LFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISS 248
L +L + GF++G+ D + K + I+KA+ E A L+ +P
Sbjct: 670 LVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQERQLEAEP---GR 726
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKVTNNIN---QVCLPEGLIEPFPANNLQFMVESGA 305
+ E++ + + +L+K ++ Q L E +NNL+ MV +G+
Sbjct: 727 TMMESF----------ENRVNQVLNKARDDAGSSAQKSLSE-------SNNLKAMVTAGS 769
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS +N Q++ +GQ +EGKR RTLP F + P + GFV+ ++ G+ PQ
Sbjct: 770 KGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQ 829
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EFFFH M GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +IQ LYGED
Sbjct: 830 EFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGED 889
Query: 426 GLDVT--KRQYLT---------DKQFSFLEDNIKWICSY 453
G+D + Q L D+ F + D+ W SY
Sbjct: 890 GMDAVWIETQKLDSLKMKKGEFDRVFKYEIDDENWNPSY 928
Score = 138 bits (347), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 127/455 (27%), Positives = 213/455 (46%), Gaps = 88/455 (19%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
L SL PGE +G +AAQSIGEP+TQMTLNTFH+AG NVTLG+PRLREI+ +A K IK
Sbjct: 1073 LQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA-KKIK 1131
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCF 687
TPS+ + PD+ K +++A + ++ T+ V + ++ W + P + + F
Sbjct: 1132 TPSLSVYLKPDVSKTKERAKNVQCALEYTTLRSVTQATEV--WYDPDPMSTI-IEEDVDF 1188
Query: 688 IPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDD 747
+ ++ V P KI R IE +R+ M D
Sbjct: 1189 VKSYYEMPDEEVAPEKISPWLLR----------------------IELNREMMVD----- 1221
Query: 748 EGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDN 807
L D++ +K+N E D+D ++ DDN
Sbjct: 1222 ---------KKLSMADIA--------------EKINLEFDDD---------LTCIFNDDN 1249
Query: 808 TSNIGERFKI--------EFRDST---NVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLP 856
+ R +I E +D + +VF+K + + N++ + + + +F+
Sbjct: 1250 AEKLILRIRIMNDEAPKGELQDESAEDDVFLKKI--ESNMLTEMALRGIPDI--NKVFIK 1305
Query: 857 S---NLFEEKES-----KHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAA 908
S N F+E E + +L T+G+N+ + + +D + N + + GIEA
Sbjct: 1306 SGKVNKFDESEGFKPEVEWMLDTEGVNLLAVMCHED-VDARRTTSNHLIEVIEVLGIEAV 1364
Query: 909 NRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSF-IQKMTFEM 967
R ++ E++ V + G V+ RHL+++ D MT+ G +A+ R+GI N + + + +FE
Sbjct: 1365 RRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEE 1424
Query: 968 PLEKIRQASMQGREDSLRAPSARVMLGQECRQGTG 1002
++ + A++ D LR + +MLGQ GTG
Sbjct: 1425 TVDILLDAAVYAETDFLRGVTENIMLGQLAPIGTG 1459
>gi|188532157|gb|ACD63090.1| RNA polymerase II largest subunit [Pisum sativum]
Length = 1010
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 153/452 (33%), Positives = 230/452 (50%), Gaps = 45/452 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ G++QD ++ K++ RDTF+ + +MN++ +
Sbjct: 430 RAEVLELMMVPKCIVSPQANRPVMGIVQDSLLGCRKITKRDTFIAKDVFMNIL---MWWE 486
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + + PTI KP PLWTGKQV + +I PK +IR+ S ++ + G G
Sbjct: 487 DFDGKVPAPTILKPEPLWTGKQVFNLII----PKQINLIRY----SSWHNEAERGPITPG 538
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
DT V I GELL+G L KK G+ L+H VW+ G + A L L
Sbjct: 539 ------DTMVRIEKGELLTGTLCKKTLGTGTGSLIHVVWEEVGPDAARKFLGHTQWLVNY 592
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L + F++G+ D + + I++A+ + A L+ +P
Sbjct: 593 WLLQNAFSIGIGDTIADASTMETINQTISQAKDKVKQLIREAQEKKLEAEP--------- 643
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
+ F ++++ D N+ Q L E +NNL+ MV +G+KGS +N
Sbjct: 644 GRTMMDSFENRVNQTLNKARDDAGNSA-QKSLSE-------SNNLKAMVTAGSKGSFINI 695
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q++ +GQ +EGKR RTLP F + P + GFV+ ++ G+ PQEFFFH M
Sbjct: 696 SQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 755
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVT-- 430
GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +IQ LYGEDG+D
Sbjct: 756 GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWI 815
Query: 431 KRQYLT---------DKQFSFLEDNIKWICSY 453
+ Q L D+ F + D+ W +Y
Sbjct: 816 ETQKLDSLKMKKTDFDRAFRYEFDDENWKPTY 847
>gi|188532155|gb|ACD63089.1| RNA polymerase II largest subunit [Persea americana]
Length = 1009
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 153/458 (33%), Positives = 229/458 (50%), Gaps = 57/458 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ G++QD ++ K++ RDTF+ + +MN++ +
Sbjct: 429 RAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL---MWWE 485
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR----HGELLSGILDKKQFGS 128
+ + + P I KP PLWTGKQV + +I PK +I H E +G +
Sbjct: 486 DFDGKIPAPAILKPRPLWTGKQVFNLII----PKQINLIXTSAWHSESETGFITPG---- 537
Query: 129 TQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAK 188
DT V I GELL+G L KK G++ L+H +W+ G + A L
Sbjct: 538 ----------DTQVRIEKGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQW 587
Query: 189 LFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISS 248
L +L + GF++G+ D + K + I KA+ + A L+ +P
Sbjct: 588 LVNYWLLQNGFSIGIGDTIADAATMEKINETILKAKSEVKDLIKAAQEKSLEAEP----- 642
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGS 308
+ F ++++ D ++ Q L E +NNL+ MV +G+KGS
Sbjct: 643 ----GRTMMESFENRVNQVLNKARDDAGSSA-QKSLSE-------SNNLKAMVTAGSKGS 690
Query: 309 TVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFF 368
+N Q++ +GQ +EGKR +GRTLP F + P GFV+ ++ G+ PQEFF
Sbjct: 691 FINISQMTACVGQQNVEGKRIPYGFNGRTLPHFTKDDYGPEXRGFVENSYLRGLTPQEFF 750
Query: 369 FHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
FH M GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +IQ LYGEDG+D
Sbjct: 751 FHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 810
Query: 429 -------------VTKRQYLTDKQFSFLEDNIKWICSY 453
+ KR++L ++ DN W Y
Sbjct: 811 SVWIESQKLDSLKMKKREFLNVYRYEI--DNENWNPGY 846
>gi|397135866|gb|AFO11428.1| RNA polymerase I, partial [Aciculoconidium aculeatum]
Length = 872
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 146/419 (34%), Positives = 219/419 (52%), Gaps = 39/419 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
++E S + V Q + P+ P+ G++QD + K++LRD ++ + MN+ Y I
Sbjct: 311 RSELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDIYIEYDQVMNICY---WIP 367
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N + PP I KP PLWTGKQ+LS I PK H + G D
Sbjct: 368 NWDGVIPPPAIVKPKPLWTGKQLLSMAI----PKGI----HLQRFDGGKD---------- 409
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ + DT + I GE++ G++DKK G+T GL+H V G + L S + K+
Sbjct: 410 -MLSPNDTGMLIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPQVCAKLFSSIQKVVNY 468
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + + T I +A+ E +A + +P + L+E
Sbjct: 469 WLLHNGFSIGIGDTIADAGTXKTITSTIQEAKEKVXEIILDAQQNRXEPEPGMT---LRE 525
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
++ + + ++ N + NN++ MV SG+KGS +N
Sbjct: 526 SF--------------EHNVSRILNQARDTAGRSAEMNLKDLNNVKQMVTSGSKGSFINI 571
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EGKR S RTLP F + SP + GFV+ ++ G+ PQEFFFH M
Sbjct: 572 SQMSAXVGQQIVEGKRIPFGFSDRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAM 631
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTK 431
AGREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S ++Q +YGEDG+D T+
Sbjct: 632 AGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIVQFVYGEDGIDGTQ 690
>gi|440494610|gb|ELQ76975.1| RNA polymerase I, large subunit [Trachipleistophora hominis]
Length = 1364
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 163/480 (33%), Positives = 243/480 (50%), Gaps = 93/480 (19%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE ++L + Y + +G P+ GL+QD+V+S ++L+D F +RAE +N + A L
Sbjct: 586 RAENAYLSSTHENYAL--NGKPVRGLVQDYVVSMFSITLKDRFFSRAE-INELLIASRKL 642
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVI------INLTPKDKVIIRHGELLSGILDKKQF 126
N I + I +P L+TGKQ+++ ++ IN +K+
Sbjct: 643 NFTITS--AAILRPKQLYTGKQLIAMLLSAYDLRINYEHANKI----------------- 683
Query: 127 GSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCL 186
ST Y H T V +G + G+LDK + G ++ GLVH + G +L+ L
Sbjct: 684 -STLYWKEHREEST-VRFHNGYYVHGVLDKSEVGPSKNGLVHCIGMLKGYFVCNDVLTAL 741
Query: 187 AKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLG-------------TEAACN 233
++ + YL G LG+ D ++ + + R +I + + G + C+
Sbjct: 742 GRMVSRYLVCYGQPLGISDFVLGRVYEEARARIFREGVKRGDKVLRDNMGDDCDKDEGCD 801
Query: 234 ALGL---------------------------------PLDTDPEI--ISSQLQEAYAS-- 256
++G P++T I I++ L Y++
Sbjct: 802 SMGRGEDCDGMGRSDDCDGRGKDSVTDKGSNNFNISNPINTTNNIYPITTNLTNPYSTPM 861
Query: 257 --IPQF------RAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGS 308
IP+ R +D K + VT+ ++ + L +G+ PFP+N + ++ SGAKGS
Sbjct: 862 VVIPKVTLSKNERINLDNTIKKEMHTVTSQVSDL-LIKGIETPFPSNKMANIILSGAKGS 920
Query: 309 TVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFF 368
VN QIS LLGQ LEG R +M +GR+L SFL V +GGF+ RF+TG+ FF
Sbjct: 921 IVNFSQISGLLGQQSLEGGRVPLMSNGRSLCSFLKSSVL--SGGFILDRFLTGLSLSSFF 978
Query: 369 FHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
FHC AGREGLIDTAVKTSRSGYLQRC+VK +EG V YDM+VRD LIQ +YGEDG D
Sbjct: 979 FHCQAGREGLIDTAVKTSRSGYLQRCIVKMMEGTVVEYDMSVRDG--MLIQYVYGEDGKD 1036
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 78/152 (51%), Gaps = 29/152 (19%)
Query: 574 PGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEI 633
PGE+VG++AAQ+IGEPSTQMTLNTFH AG NVTLG+PRL+EILM+ K+I T
Sbjct: 1111 PGESVGMIAAQAIGEPSTQMTLNTFHLAGCA-TNVTLGMPRLKEILMIGNKSINTVIK-- 1167
Query: 634 PFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCFIPAHMY 693
K NR+ + + + D L ++ E E F+
Sbjct: 1168 ---------GKITNRITFDPSTVLLKDALFYYRVVERNETD----------VLFVLNRSV 1208
Query: 694 RDKTSVKPSKIIDHFERKFLKELEVAIAKRAA 725
+ T ++ F+R FLKE+ + K AA
Sbjct: 1209 GNDTVIR-------FKRMFLKEVNRCMGKGAA 1233
>gi|403365508|gb|EJY82539.1| hypothetical protein OXYTRI_19848 [Oxytricha trifallax]
Length = 1782
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 141/418 (33%), Positives = 223/418 (53%), Gaps = 40/418 (9%)
Query: 14 AEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCILN 73
AE +M V +Q + P+ P+ G++QD ++ +L+DTF+ + LV Q L +N
Sbjct: 483 AEVKEIMAVPNQIVSPQSNKPVMGIVQDSLLGVMLFTLKDTFIEK----ELVMQLLMWIN 538
Query: 74 TEIRTLPP-TIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
E LPP I KP PLWTGKQ+ S +I ++ + + ++++ G +
Sbjct: 539 YEDDKLPPPAILKPKPLWTGKQIFSLIIPDIN------------IQKVGERQKKGEPKNL 586
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ + D ++ +R GELL G L K GS+ G++H +W G +S +
Sbjct: 587 IWDSAGDNNILMRKGELLCGNLTKSTIGSSSGGMIHVIWKEKGPYVTRDFMSNTQLVINN 646
Query: 193 YLQRVGFTLGVRDILVRQE---RDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
+L + GFT+GV+DI+ ++E + R+ I K + T+ A ++ +
Sbjct: 647 WLHQHGFTVGVQDIIAKKEIVQKIRESMVIFKKKVQQITQKA------------QMGKLK 694
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
Q + F A +++ L+K ++ + L + ++ + N L+ MV +G+KGS
Sbjct: 695 TQPGKGMMDSFEASVNQ----CLNKARDDCGNMALAD--LQSW--NRLKAMVYAGSKGSN 746
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N QI +GQ +EGKR R+LP F + P + GFV+ ++ G+ PQEFFF
Sbjct: 747 LNISQIMACVGQQNVEGKRIPFGFHRRSLPHFSKDDYGPESKGFVENCYLNGLTPQEFFF 806
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL 427
H M GREGLIDTAVKT+ +GY+QR L+K LE + V YD TVR S +IQ LYGEDG+
Sbjct: 807 HAMGGREGLIDTAVKTAETGYIQRRLIKALEDVMVKYDGTVRTSKEQIIQFLYGEDGM 864
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 79/140 (56%), Gaps = 2/140 (1%)
Query: 868 LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 927
L++TDG+ + + + ++ + NDI + GIEA +I E++ V + YGI V
Sbjct: 1309 LIETDGVALQKVLG-QEGINYRRTVSNDIIEILKVLGIEAVRMSLINELRFVLSSYGIYV 1367
Query: 928 DPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRA 986
+ RHLS + D MT G A+ R+GI R++ ++K +FE +E + +A++ D L+
Sbjct: 1368 NYRHLSTLCDVMTQRGILTAITRHGINRVDSGPLRKCSFEETVEILLEAAVFAETDHLKG 1427
Query: 987 PSARVMLGQECRQGTGLFQL 1006
+ +++GQ GTG F++
Sbjct: 1428 ITENIIMGQLAPYGTGSFEI 1447
>gi|350640058|gb|EHA28411.1| hypothetical protein ASPNIDRAFT_128642 [Aspergillus niger ATCC 1015]
Length = 2063
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 191/652 (29%), Positives = 305/652 (46%), Gaps = 96/652 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + PK+G P+ IQD + + LS +D F R + + L +L
Sbjct: 1143 RAEAMELMGVKNNLATPKNGEPIISAIQDFISAAYILSSKDNFFDRRSFTQI---CLYML 1199
Query: 73 NTEIR--TLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDK--KQFGS 128
+ R PP + KP LWTGKQV + +++ D V++ LD +QF +
Sbjct: 1200 GPQTRFDLPPPAVLKPQMLWTGKQVFN-ILMRPNKDDPVLVN--------LDAACRQFKA 1250
Query: 129 TQYGLVHAV--WDTHVTIRHGELLSGILDKKQFGSTQY-GLVHAVWDTHGAEHAISLLSC 185
+ G + D+ + IR+ E++ G++DK GS + + + + +G A ++
Sbjct: 1251 PKDGTPRDLDPKDSWLVIRNSEVMCGVMDKSTIGSGKKDNVFYIMLRDYGPVAAAEGMNR 1310
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEI 245
L++L + +GF++G+ D+ ++ R + ++ A A C+ E+
Sbjct: 1311 LSRLSARWFTNMGFSIGITDVYPSEKLLRSKHDLVETAY-----AQCD----------EV 1355
Query: 246 IS---SQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
I+ + E Y + + ++ Q +L KV C+ + + + N+ M
Sbjct: 1356 IAKYKAGTLEKYPGCDELQT-MENQLSGILSKVRQQAGDECIAQ--LSKY--NSPLIMAT 1410
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
SG+KGS++N Q+ L+GQ + G+R RTLP F P + GFV F +G+
Sbjct: 1411 SGSKGSSINVSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNARQPPSKGFVRNSFFSGL 1470
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
+P EF FH M+GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR+S +++Q Y
Sbjct: 1471 EPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSTRYDDTVRNSSAAIVQFQY 1530
Query: 423 GE---DGLDVTKRQ----------------YLTDKQFSFLEDNIKWICSYKVILNLLKKH 463
G+ D LD+ + Y D++ S L I IC +L K
Sbjct: 1531 GDDKLDPLDMEGKAKPVHFDRTFIHAESTTYKNDER-SLLPAEIMEICE-----EMLSKE 1584
Query: 464 PLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQ-LDDKARKKYRKKFKACPQPL 522
L L+ + + + D LE Q + KA K + P
Sbjct: 1585 RSKLVRKDLMGNELGYMDRSDHGVDQFESARDFLESIQQYVATKADKLISRGGDIDPNDE 1644
Query: 523 ISTFQPDAHFGSISEN-----LADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGEN 577
S + H G ++E ++ ++KY K + +A H
Sbjct: 1645 RSQ-KGLNHTGKLTERTLRTFISSCLMKYKKAQVEAGHA--------------------- 1682
Query: 578 VGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
VG + AQSIGEP TQMTL TFHFAG M++T G+PR++EI+ A+K I TP
Sbjct: 1683 VGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEII-NASKEISTP 1733
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 62/114 (54%), Gaps = 3/114 (2%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N++ M GIEAA I++E+ V +++DPRH+ L+AD MT+ G + + R G+
Sbjct: 1911 NNVMEMRDVLGIEAARTTIVQEISEVMK--DMDIDPRHMQLLADVMTYKGEVLGITRFGL 1968
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
++ S +Q +FE + + A GR D + S +++G+ GTG ++
Sbjct: 1969 AKMRDSVLQLASFEKTADHLFDAGGAGRSDLIEGVSECIIMGKTVSLGTGAMEV 2022
>gi|357144975|ref|XP_003573479.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Brachypodium distachyon]
Length = 1862
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 146/420 (34%), Positives = 217/420 (51%), Gaps = 40/420 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ G++QD ++ K++ RDT + + +MN++ +
Sbjct: 512 RAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNIL---MWWE 568
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + + P I KP P+WTGKQV + +I L + H E SG +
Sbjct: 569 DFDGKVPAPAILKPRPIWTGKQVFNLIIPKLINLIRFSAWHAESESGFITPG-------- 620
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
DT V I GELLSG L KK G+ L+H +W+ G + A L L
Sbjct: 621 ------DTMVRIEKGELLSGTLCKKTLGTGTGSLIHVIWEEVGPDAARKFLGHTQWLVNY 674
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L + GF++G+ D + K + I+KA+ TE A L+ +P + E
Sbjct: 675 WLLQNGFSIGIGDTIADASTMEKINETISKAKSEVTELIKQAQDKLLEPEP---GRTMME 731
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNIN---QVCLPEGLIEPFPANNLQFMVESGAKGST 309
++ + + +L+K ++ Q L E +NNL+ MV +G+KGS
Sbjct: 732 SF----------ENRVNQVLNKARDDAGSSAQKSLSE-------SNNLKAMVTAGSKGSF 774
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q++ +GQ +EGKR RTLP F + P + GFV+ ++ G+ PQEFFF
Sbjct: 775 INISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKNDYGPESRGFVENSYLRGLTPQEFFF 834
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H M GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +IQ LYGEDG+D
Sbjct: 835 HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDA 894
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 125/445 (28%), Positives = 211/445 (47%), Gaps = 68/445 (15%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
L SL PGE +G +AAQSIGEP+TQMTLNTFH+AG NVTLG+PRLREI+ +A K IK
Sbjct: 1074 LQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA-KKIK 1132
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISP-----EPHMNYQ 682
TPS+ + P++ K ++ A + ++ T+ V +I W + P E M++
Sbjct: 1133 TPSLSVFLKPEVSKKKELAKNVQCALEYTTLRSVTHATEI--WYDPDPLGTIIEEDMDFV 1190
Query: 683 MKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMED 742
+ +P D + P + R+ + + ++++A A E+ + +D
Sbjct: 1191 KSYYEMPDEDI-DPDKISPWLLRIELNREMMVDKKLSMADIA---------EKINHEFDD 1240
Query: 743 DVE----DDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEER 798
D+ DD A + RV +++DE A + + ED+ F +
Sbjct: 1241 DLSCIFNDD------NADKLILRVRITNDE------APKGEIQDESAEDDVFLK------ 1282
Query: 799 MSEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSN 858
KIE T + ++ + + + + KY K N F P N
Sbjct: 1283 -----------------KIEGNMLTEMALRGIPDINKVFIKYG--KINKFDENDGFKPDN 1323
Query: 859 LFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKN 918
+ +L T+G+N+ + + + D + N + + GIEA R ++ E++
Sbjct: 1324 EW-------MLDTEGVNLLAVMCHEDV-DATRTTSNHLIEVIEVLGIEAVRRSLLDELRV 1375
Query: 919 VFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSF-IQKMTFEMPLEKIRQASM 977
V + G V+ RHL+++ D MT+ G +A+ R+GI N + + + +FE ++ + A++
Sbjct: 1376 VISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAV 1435
Query: 978 QGREDSLRAPSARVMLGQECRQGTG 1002
D LR + +MLGQ GTG
Sbjct: 1436 YAESDYLRGVTENIMLGQLAPIGTG 1460
>gi|68473217|ref|XP_719414.1| hypothetical protein CaO19.7655 [Candida albicans SC5314]
gi|46441230|gb|EAL00529.1| hypothetical protein CaO19.7655 [Candida albicans SC5314]
Length = 1728
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 149/419 (35%), Positives = 222/419 (52%), Gaps = 39/419 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
++E S + V Q + P+ P+ G++QD + K++LRD F+ + MN+ Y I
Sbjct: 498 RSELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIEYDQVMNMCY---WIP 554
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N + PP + KP LWTGKQ+LS I PK H + G D
Sbjct: 555 NWDGVIPPPAVVKPKQLWTGKQLLSLAI----PKGI----HLQRFDGGRD---------- 596
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ + DT + I GE++ G++DKK G+T GL+H V G + L S + K+
Sbjct: 597 -LLSPKDTGMLIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPKVCAELFSSIQKVVNY 655
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + + R K I +A++ E +A L+ +P + L+E
Sbjct: 656 WLLHNGFSIGIGDTIADAQTMRDVNKTIQEAKQKVQEIIIDAQHNKLEPEPGMT---LRE 712
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
+ F + R D + ++ L + NN++ MV SG+KGS +N
Sbjct: 713 S------FEHNVSRVLNQARDTAGRSA-EMSLKD-------LNNVKQMVTSGSKGSFINI 758
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EGKR R+LP F + SP + GFV+ ++ G+ PQEFFFH M
Sbjct: 759 SQMSACVGQQIVEGKRIPFGFGDRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAM 818
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTK 431
AGREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S +IQ +YGEDG+D T+
Sbjct: 819 AGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFIYGEDGIDGTQ 877
Score = 134 bits (337), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 138/446 (30%), Positives = 209/446 (46%), Gaps = 66/446 (14%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
S+ +PGE VGV+AAQSIGEP+TQMTLNTFH+AG NVTLG+PRL+EIL +A K IKTP
Sbjct: 1057 SIVHPGEMVGVVAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVA-KNIKTP 1115
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNY-QMKFCFI 688
+M + P++ +KA + ++ T L+ V + P+P + + +
Sbjct: 1116 AMTVFLDPEVASDIEKAKIVQSAIEHTT----LKNVTSSTEIYYDPDPRTTVIEDDYDTV 1171
Query: 689 PAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDE 748
A+ V+ S ID + +L LE+ AK + L + Q+ + + +
Sbjct: 1172 EAYFAIPDQKVEES--IDK-QSPWLLRLELDRAKMLDKQL-------TMAQVAEKISQNF 1221
Query: 749 GE------GAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSER 802
GE + A + R V D + +EDA + EED ++ +R
Sbjct: 1222 GEDLFVIWSDDTADKLIIRCRVVRDPKSLDEDA-------DAEED----------QILKR 1264
Query: 803 EEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNLFEE 862
E +I R T VF+ QH + H P E
Sbjct: 1265 IEAHMLESISLR---GIPGITRVFMM----QHKVSH-----------------PDETGEF 1300
Query: 863 KESKH-LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 921
K+ K +L+TDG+N+ + + D + Y ND + S GIEA + +E+ NV A
Sbjct: 1301 KQGKEWVLETDGVNLADVMAVPGV-DSTRTYSNDFIEVLSVLGIEATRSSLYKEILNVIA 1359
Query: 922 VYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGR 980
G V+ RH++L+ D MT G +A+ R+GI R + + + +FE +E + A+
Sbjct: 1360 FDGSYVNYRHMALLVDVMTSRGHLMAITRHGINRSDTGALMRCSFEETVEILLDAAAAAE 1419
Query: 981 EDSLRAPSARVMLGQECRQGTGLFQL 1006
D + S VMLGQ GTG F L
Sbjct: 1420 LDDCKGISENVMLGQMAPLGTGSFDL 1445
>gi|1945435|gb|AAC49712.1| RNA polymerase II largest subunit [Spirogyra sp.]
Length = 613
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 154/433 (35%), Positives = 217/433 (50%), Gaps = 66/433 (15%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ G++QD ++ K++ RDTF+ + +MN++ +
Sbjct: 21 RAETMELMMVPKCVVSPQSNRPVMGIVQDTLLGCRKVTKRDTFIEKDVFMNIL---MWWE 77
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVI---INLTPKDKVIIRHGELLSGILDKKQFGST 129
+ E + PTI KP PLWTGKQV S +I +NL E S + G
Sbjct: 78 DFEGKIPSPTILKPRPLWTGKQVFSLIIPRAVNL-----------ERYSAWHPDSERGDF 126
Query: 130 QYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKL 189
G DT V + GELL+GIL KK G++ LVH +W+ G + A L L
Sbjct: 127 SPG------DTQVRVEKGELLAGILCKKSLGTSGGSLVHIIWEEVGPDAARKFLGHTQWL 180
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKAR---RLGTEAACNALGLPLDTDPEII 246
+L + GF++G+ D + + I KA+ + EAAC
Sbjct: 181 VNYWLLQQGFSIGIGDTIADASTMDTINETIAKAKTEVKDLIEAACEK------------ 228
Query: 247 SSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQV----------CLPEGLIEPFPANN 296
Q AQ R +L++ N +NQV L E +NN
Sbjct: 229 ------------QLEAQPGR---TLMESFENRVNQVLNKARDDAGRAAQSSLSE---SNN 270
Query: 297 LQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDG 356
++ MV +G+KGS +N Q+ +GQ +EGKR RTLP F + P + GFV+
Sbjct: 271 VKAMVTAGSKGSFINISQMIACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVEN 330
Query: 357 RFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLS 416
++ G+ PQEFFFH M GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S
Sbjct: 331 SYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDVMVKYDGTVRNSLGD 390
Query: 417 LIQVLYGEDGLDV 429
+IQ LYGEDG+D
Sbjct: 391 VIQFLYGEDGMDA 403
Score = 48.5 bits (114), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 25/31 (80%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTF 598
L S PGE +G +AAQSIGEP+TQMTLNTF
Sbjct: 583 LQSQVAPGEMIGCVAAQSIGEPATQMTLNTF 613
>gi|242807568|ref|XP_002484983.1| DNA-directed RNA polymerase III largest subunit, putative
[Talaromyces stipitatus ATCC 10500]
gi|218715608|gb|EED15030.1| DNA-directed RNA polymerase III largest subunit, putative
[Talaromyces stipitatus ATCC 10500]
Length = 1441
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 194/685 (28%), Positives = 315/685 (45%), Gaps = 84/685 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
++EA LM V + + PK+G P+ G IQD + + LS +D F R + + L +L
Sbjct: 530 RSEAMELMGVKNNLVTPKNGEPIIGAIQDFISAAYMLSSKDNFFDRRSFTQI---CLYML 586
Query: 73 NTEIR--TLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
E R PP I KP LWTGKQV + +++ D V + ++F + +
Sbjct: 587 GPETRFDLPPPAILKPQMLWTGKQVFN-ILMRPNKDDPVKVNIDAAC------REFKAPK 639
Query: 131 YGLVHAV--WDTHVTIRHGELLSGILDKKQFGSTQY-GLVHAVWDTHGAEHAISLLSCLA 187
G + D + IR+ E++ G++DK GS + + + + G A ++ L+
Sbjct: 640 DGQPKDLDPNDGWLVIRNSEIMCGVMDKSTIGSGKKDNVFYIMLRDFGPPAAAEGMNRLS 699
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIIS 247
KL + VGF++G+ D+ ++ + + +++ +A AAC+ E+I+
Sbjct: 700 KLCARWFTNVGFSIGITDVYPSEKLVQTKNELVERAY-----AACD----------EVIA 744
Query: 248 ---SQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESG 304
+ E A + + ++ Q +L KV + C+ + + + N M SG
Sbjct: 745 KYKAGKLEKLAGCDELQT-MESQVSGILSKVRQQAGEECIAQ--LSKY--NAPLIMATSG 799
Query: 305 AKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQP 364
+KGS++N Q+ ++GQ + +R RTLP F P + GFV F + + P
Sbjct: 800 SKGSSINVSQMVAVVGQQIISSERVQDGFQDRTLPHFPKNARHPPSKGFVRNSFFSSLSP 859
Query: 365 QEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGE 424
EFFFH M+GREGLIDTAVKT+ +GY+ R L+K LE L+ YD T+R S S++Q YG
Sbjct: 860 TEFFFHAMSGREGLIDTAVKTAETGYMSRRLMKSLEDLSAKYDGTIRTSSASIVQFSYGG 919
Query: 425 DGLD-VTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNF 483
D LD V F ++ I L ++ LL +
Sbjct: 920 DDLDPVDMEGKAKPVHFDRTYNHAMAITHNNNERGLEPSEIRTITEELLAKERQRYVRKG 979
Query: 484 IFS---PHR--TKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDA------HF 532
+F P++ + + D E D ++ KK + + S + H
Sbjct: 980 LFGEDLPYKDDSDYGTDQFESARAFLDSIQEHIEKKAVEMEKAINSALSGEEARMALDHV 1039
Query: 533 GSISEN-----LADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIG 587
G +SE + + KY K + + H VG + AQSIG
Sbjct: 1040 GKLSERSLRYFIKSCLSKYEKAKIEPGHA---------------------VGAVGAQSIG 1078
Query: 588 EPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPF-LPDMPKLEKKA 646
EP TQMTL TFHFAG G++ +T G+PR++EI+ A+K I TP + +PD + A
Sbjct: 1079 EPGTQMTLKTFHFAGVGNLALTQGVPRIKEII-NASKEISTPVITCHLAVPD----KVHA 1133
Query: 647 NRLAKSMTRIT-MADVLEKVKIKEW 670
R+AK T + D++ ++ + W
Sbjct: 1134 ARIAKGRIEKTFLRDIIHYIR-ESW 1157
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 62/115 (53%), Gaps = 3/115 (2%)
Query: 893 VNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNG 952
N++ M + GIEAA II E+ V +++DPRH+ L+AD MT +G + + R G
Sbjct: 1294 TNNVMEMRAVLGIEAARGTIINEMSEVMK--DMDIDPRHMHLLADIMTTTGEVLGITRFG 1351
Query: 953 I-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+ ++ S +Q +FE + + A GR D + S +++G+ GTG ++
Sbjct: 1352 MAKMRDSVLQLASFEKTADHLFDAGGTGRTDRVEGVSECIIMGKTVSLGTGAMEV 1406
>gi|397135926|gb|AFO11458.1| RNA polymerase I, partial [Sporopachydermia lactativora]
Length = 871
Score = 230 bits (587), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 147/416 (35%), Positives = 215/416 (51%), Gaps = 40/416 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S L V Q + P+ P+ G++QD + K++LRD F+ + MNL Y I
Sbjct: 311 RAELSQLCLVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDNFIEYDKVMNLCY---WIP 367
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ P I KP PLWTGKQ++S I PK G L + DK +
Sbjct: 368 EWDGVIPQPAILKPKPLWTGKQMVSMAI----PK-------GIHLQRVDDKNRLNPK--- 413
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
D + I GE++ G++DKK G+T G++H + + G + A + KL
Sbjct: 414 ------DNSMLIIDGEIIYGVVDKKSVGATSGGIIHTIRQSKGPQVAAKFFGNVQKLVNY 467
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + R+ T I A++ E A L+ P +
Sbjct: 468 WLLHNGFSIGIGDTIADASTMREITTTIADAKKKVEEITLKAQRDELELLPGMT------ 521
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
R+ + S+L++ +N + + NN++ MV +G+KGS +N
Sbjct: 522 -------LRSTFESLVTSVLNQARDNAGK----SSEVNLKNDNNVKQMVVAGSKGSFINI 570
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EGKR + RTLP F + SP + GFV+ ++ G+ PQEFFFH M
Sbjct: 571 SQMSACVGQQIVEGKRVPFGFADRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAM 630
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
AGREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S +IQ +YGEDGLD
Sbjct: 631 AGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFIYGEDGLD 686
>gi|85000327|ref|XP_954882.1| DNA-directed RNA polymerase II largest subunit [Theileria annulata
strain Ankara]
gi|65303028|emb|CAI75406.1| DNA-directed RNA polymerase II largest subunit, putative [Theileria
annulata]
Length = 1678
Score = 230 bits (587), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 146/438 (33%), Positives = 230/438 (52%), Gaps = 46/438 (10%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
+H +AE LM V Q + P+ P+ G++QD +++ +K + RDTFLTR E M+L+
Sbjct: 495 THETRAEVKHLMLVPKQIVSPQGNRPVMGIVQDSLLAVSKFTKRDTFLTRDELMSLL--- 551
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKV----IIRHGELLSGILDKK 124
+ I + + P I+ P LWTGKQV+S V++ + +IR G + LDK
Sbjct: 552 IWIPYWDGKLPQPAIFFPKNLWTGKQVIS-VLLTFNQSQGITNINLIRDGTIK---LDKD 607
Query: 125 QFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLS 184
++ D+ V IR E LSGI+ KK G + L+H +W G E L+
Sbjct: 608 NLNC-------SINDSRVIIRKNEHLSGIICKKTVGCSSGSLIHILWHEAGPEKCRDFLT 660
Query: 185 CLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPE 244
L K+ + ++GFT+ DI + K +I++K+++ + A L P
Sbjct: 661 TLQKVVNNWFLQIGFTVSCSDIYCSESTLNKVYRILDKSKKEVQKLVLQAQKGKLKCQP- 719
Query: 245 IISSQLQEAYASIPQFRAQIDRQYKSLLDK----VTNNINQVCLPEGLIEPFPANNLQFM 300
L E+ F A+++++ ++ V +++N NN+ M
Sbjct: 720 --GKSLFES------FEARVNKELNDAREQSGSVVASSLNL------------TNNILSM 759
Query: 301 VESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMT 360
V SG+KGST+N QI +GQ +EGKR R+LP F+ ++ P + GFV +++
Sbjct: 760 VNSGSKGSTINISQIIACVGQQNVEGKRIPFGFRDRSLPHFIKHDYGPESRGFVSNSYLS 819
Query: 361 GIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQV 420
G+ PQE FFH M GREG+IDTA KTS +GY+QR L+K +E + V YD T R+ + ++Q
Sbjct: 820 GLTPQEMFFHAMGGREGIIDTACKTSETGYVQRRLIKAMEDVMVQYDRTARNGNGEILQF 879
Query: 421 LYGEDGLDVTKRQYLTDK 438
LYGEDG+ +Y+ D+
Sbjct: 880 LYGEDGMGA---EYIEDQ 894
Score = 93.2 bits (230), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 44/80 (55%), Positives = 61/80 (76%), Gaps = 1/80 (1%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
++ANPGE VG +AAQSIGEP+TQMTLNTFHFAG NVTLG+PRL+E++ + T ++TP
Sbjct: 1071 AIANPGECVGAIAAQSIGEPATQMTLNTFHFAGVSSKNVTLGLPRLKELINVVTN-VRTP 1129
Query: 630 SMEIPFLPDMPKLEKKANRL 649
S+ I P + K +++A +
Sbjct: 1130 SLTIYLDPSINKDQERAKEM 1149
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 85/152 (55%), Gaps = 2/152 (1%)
Query: 862 EKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 921
++ S+ +L TDG N+ + +D K + ND+ + +GIEAA R ++RE++ V +
Sbjct: 1313 DRVSQWVLDTDGCNLESVLPIT-CVDYTKTFSNDVSEIFHVFGIEAARRALLREIRAVIS 1371
Query: 922 VYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGR 980
G V+ RHLSL+ D MT G +++ R+GI R + + K +FE LE + A++ G
Sbjct: 1372 FDGAYVNYRHLSLLCDIMTQKGYLMSITRHGINRADRGPLIKCSFEETLETLLTAAVFGE 1431
Query: 981 EDSLRAPSARVMLGQECRQGTGLFQLRNREKK 1012
D L+ + V++GQ GTG F + E K
Sbjct: 1432 VDHLKGVTENVIVGQLSPYGTGAFDIMIDEVK 1463
>gi|70998935|ref|XP_754189.1| DNA-directed RNA polymerase III largest subunit [Aspergillus
fumigatus Af293]
gi|66851826|gb|EAL92151.1| DNA-directed RNA polymerase III largest subunit, putative
[Aspergillus fumigatus Af293]
gi|159127207|gb|EDP52322.1| DNA-directed RNA polymerase III largest subunit, putative
[Aspergillus fumigatus A1163]
Length = 1453
Score = 230 bits (587), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 192/651 (29%), Positives = 298/651 (45%), Gaps = 94/651 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + PK+G P+ IQD + + LS +D F R + + L +L
Sbjct: 530 RAEAMELMGVKNNLATPKNGEPIISAIQDFISAAYILSSKDNFFDRRSFTQI---CLYML 586
Query: 73 NTEIR--TLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDK--KQFGS 128
E R PP + KP LWTGKQV + +++ D V++ LD ++F
Sbjct: 587 GPETRFDLPPPAVLKPQMLWTGKQVFN-ILMRPNKDDPVLVN--------LDAACREFKP 637
Query: 129 TQYGLVHAV--WDTHVTIRHGELLSGILDKKQFGSTQY-GLVHAVWDTHGAEHAISLLSC 185
+ G + D + IR+ E++ G++DK GS + + + + G A ++
Sbjct: 638 PKDGRPKDLDPNDGWLVIRNSEVMCGVMDKATIGSGKKDNVFYIMLRDFGPAAAAEGMNR 697
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEI 245
L+KL + +GF++G+ D+ + R + +++ A A C+ E+
Sbjct: 698 LSKLSARWFTNMGFSIGITDVYPSESLVRSKNELVEVAY-----AQCD----------EV 742
Query: 246 IS---SQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
I+ + E Y + + ++ Q +L KV C+ + + + N+ M
Sbjct: 743 IAKYKAGTLEKYPGCDELQT-MENQLSGILSKVRQQAGDECIAQ--LSKY--NSPLIMAT 797
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
SG+KGS++N Q+ L+GQ + G+R RTLP F P + GFV F +G+
Sbjct: 798 SGSKGSSINVSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNARQPPSKGFVRNSFFSGL 857
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
P EF FH M+GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR+S +++Q Y
Sbjct: 858 LPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSSRYDDTVRNSSDAIVQFQY 917
Query: 423 GEDGLDVTKRQYLT-----DKQF-------------SFLEDNIKWICSYKVILNLLKKHP 464
G+D LD + D+ F S L I +C +L K
Sbjct: 918 GDDKLDPVDMEGKAKPVHFDRTFIHAESITYDNDERSLLPHEIMEVCE-----EMLSKER 972
Query: 465 LSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQ-LDDKARKKYRKKFKACPQPLI 523
L LL K + + + D LE Q + KA K + P
Sbjct: 973 AKLVREDLLGNKLAYMDRSDHGVDQFESARDFLESIQQYISSKADKLISRGGDIDPSDER 1032
Query: 524 STFQPDAHFGSISEN-----LADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENV 578
S + H G ++E + ++KY K + + H V
Sbjct: 1033 SQ-KGLNHTGKLTEKTLRTFITSCLMKYKKAQVEPGHA---------------------V 1070
Query: 579 GVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
G + AQSIGEP TQMTL TFHFAG M++T G+PR++EI+ A+K I TP
Sbjct: 1071 GAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEII-NASKEISTP 1120
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 61/114 (53%), Gaps = 3/114 (2%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N++ M GIEAA I++E+ V GI DPRH+ L+AD MT+ G + + R G+
Sbjct: 1298 NNVMEMRDVLGIEAARVTIVQEISEVMKDMGI--DPRHMQLLADVMTYKGEVLGITRFGL 1355
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
++ S +Q +FE + + A GR D + S +++G+ GTG ++
Sbjct: 1356 AKMRDSVLQLASFEKTADHLFDAGGAGRTDLIEGVSECIIMGKTVSLGTGAMEV 1409
>gi|409051067|gb|EKM60543.1| hypothetical protein PHACADRAFT_246551 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1753
Score = 230 bits (587), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 153/422 (36%), Positives = 221/422 (52%), Gaps = 51/422 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S + V Q + P+ P+ G++QD + K +LRDTFL + N++ L +
Sbjct: 509 RAELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLDWTQVQNIL---LWVP 565
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + P + KP PLWTGKQ+LS I P+ I R+ + S
Sbjct: 566 DWDGTVPTPVVIKPKPLWTGKQLLSMCI----PRGINIHRNPDPKSS------------- 608
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ V+D V I +GEL+ GI+DKK G++Q GLVH V+ G E L + L ++
Sbjct: 609 --NPVFDDGVLIENGELIFGIVDKKTVGASQGGLVHVVFREKGPEMTRQLFTGLQQVVNY 666
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + DRK I + + + T +II +
Sbjct: 667 WLFHNGFSIGIGDTIA----DRKTMAHITEQ-----------IAIRKQTVAQIIDDAAHD 711
Query: 253 AYASIP------QFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAK 306
P F ++++R+ D+ Q L E NN++ MV +G+K
Sbjct: 712 RLKPQPGMTIRESFESKVERELNLARDQ-NGQYAQKHLKED-------NNVKQMVVAGSK 763
Query: 307 GSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQE 366
GS +N Q+S +GQ +EG+R RTLP F + SP A GFV+ ++ G+ PQE
Sbjct: 764 GSFINISQMSVCVGQQIVEGRRIPFGFRHRTLPHFTKDDFSPEARGFVENSYLRGLTPQE 823
Query: 367 FFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDG 426
FFFH MAGREGLIDTAVKT+ +GY+QR LVK LE + VHYD TVR+S LIQ +YGEDG
Sbjct: 824 FFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMVHYDGTVRNSLGDLIQFVYGEDG 883
Query: 427 LD 428
+D
Sbjct: 884 MD 885
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 68/106 (64%), Gaps = 3/106 (2%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
SLA+PGE G LAAQSIGEP+TQMTLNTFH+AG NVTLG+PRL+EI+ +AT IKTP
Sbjct: 1069 SLAHPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATN-IKTP 1127
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISP 675
S+ + + K A + + + ++ V V+I W + P
Sbjct: 1128 SLSVYLESKLAKDAALAKNVQQELAYTSLRTVTAAVEI--WYDPDP 1171
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 84/159 (52%), Gaps = 4/159 (2%)
Query: 851 KLLFLPSNLFEEK--ESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAA 908
K++ P + + E + +L+TDG+N+ + + D + Y N + GIEAA
Sbjct: 1304 KIIITPDGGIDARGGEKEWVLETDGVNLKAVMTVDGV-DFRRTYSNSCVEVFGVLGIEAA 1362
Query: 909 NRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEM 967
I++E++ V G V+ RHL+L+ D MTH G+ +A+ R+GI R + + + +FE
Sbjct: 1363 RAAIMKELRGVIEFDGSYVNYRHLALLCDLMTHRGSLMAITRHGINRADTGALMRCSFEE 1422
Query: 968 PLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+E + +A+ G +D + VM GQ GTG F +
Sbjct: 1423 TVEILMEAAAVGEKDDCHGIAENVMFGQMAPMGTGAFDV 1461
>gi|358030892|dbj|BAL15355.1| RNA polymerase II largest subunit, partial [Olpidium bornovanus]
Length = 838
Score = 230 bits (587), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 153/438 (34%), Positives = 223/438 (50%), Gaps = 50/438 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAE + + V Q + P P G++QD + K++ RD FL +A MN+ A+ +
Sbjct: 248 KAEINEICMVPKQIVAPASSKPCMGIVQDTLCGIRKMTKRDVFLDKAFVMNM---AMWVP 304
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKD-KVIIRHGELLSGILDKKQFGSTQY 131
+ + P I KP PLWTGKQ+LS +I PK V H E L G
Sbjct: 305 DWDGVLPIPAILKPKPLWTGKQMLSMLI----PKGVNVQTFHSEHPDNELTDISPG---- 356
Query: 132 GLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFT 191
DT V I +GELL+GI+ KK G++ GLVH +W G E + + +L
Sbjct: 357 -------DTKVIIENGELLAGIVCKKTVGASAGGLVHVIWQEKGPEVCKTWFNGTQRLVN 409
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQ 251
+L + GF++G+ D + + + T I +A+ + E+I Q
Sbjct: 410 YWLFQYGFSIGIGDTVADTKTMQNVTSAIQQAK---------------ERVAELILEAHQ 454
Query: 252 EAYASIP------QFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGA 305
+ +P F AQ++ + D+ + Q PE NN++ MV +G+
Sbjct: 455 DRMKPMPGMTIRETFEAQVNSALNTARDQAGKSAQQSLNPE--------NNVKQMVVAGS 506
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS +N Q++ +GQ +EGKR RTLP F + +P + GFV+ ++ G+ PQ
Sbjct: 507 KGSYINISQMTACVGQQNVEGKRIPFGFKYRTLPCFTKDDHTPESRGFVENSYLRGLTPQ 566
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EF+FH M GREGLIDTAVKT+ +GY+QR L+K LE + V YD TVR+S +IQ YGED
Sbjct: 567 EFYFHAMGGREGLIDTAVKTAETGYIQRRLIKALEDVMVKYDGTVRNSMNEVIQFSYGED 626
Query: 426 GLD--VTKRQYLTDKQFS 441
GLD +RQ L + S
Sbjct: 627 GLDGAFVERQQLEGLRMS 644
Score = 42.4 bits (98), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/25 (80%), Positives = 21/25 (84%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMT 594
SL PGE VG LAAQSIGEP+TQMT
Sbjct: 814 SLVAPGEMVGPLAAQSIGEPATQMT 838
>gi|397135900|gb|AFO11445.1| RNA polymerase I, partial [Scheffersomyces spartinae]
Length = 872
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 144/419 (34%), Positives = 219/419 (52%), Gaps = 39/419 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
++E S + V Q + P+ P+ G++QD + K++LRD F+ + MN++Y I
Sbjct: 311 RSELSQICAVPLQIISPQSNKPVMGIVQDTLCGIRKMTLRDIFIEYDQVMNMLY---WIP 367
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N + PP + KP LWTGKQ+LS I PK G L D + +
Sbjct: 368 NWDGVIPPPAVMKPKQLWTGKQLLSMAI----PK-------GIHLQRFDDGRDLSCPK-- 414
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
D + I GE++ G++DKK G+T GL+H V+ G + + S + K+
Sbjct: 415 ------DKGMLIVDGEIMFGVVDKKTVGATGGGLIHTVFREKGPQVCAQMFSAIQKVVNF 468
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + E + T I +A+ E +A L+ +P + L+E
Sbjct: 469 WLLHNGFSIGIGDTIADAETMKTITSTIREAKDKVQEIILDAQLNKLEPEPGMT---LRE 525
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
++ + + +V N + NN++ MV SG+KGS +N
Sbjct: 526 SF--------------EHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVTSGSKGSFINI 571
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EGKR RTLP F + SP + GFV+ ++ G+ PQEFFFH M
Sbjct: 572 SQMSACVGQQIVEGKRIPFGFGDRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAM 631
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTK 431
AGREGLIDTAVKT+ +GY+QR ++K LE + VHYD T R+S +IQ +YGEDG+D T+
Sbjct: 632 AGREGLIDTAVKTAETGYIQRRIIKALEDIMVHYDGTTRNSLGDIIQFVYGEDGMDGTQ 690
>gi|413915242|gb|AFW21483.1| RNA polymerase II largest subunit [Claviceps fusiformis]
Length = 1761
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 154/424 (36%), Positives = 218/424 (51%), Gaps = 49/424 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + + P+ PL G++QD + K+ RDTF+ + MN++ L +
Sbjct: 510 RAEVKELCLVPNNIVSPQKNGPLMGIVQDSLAGAYKICRRDTFVDKEMVMNMM---LWVP 566
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N + P I KP P WTGKQ++S VI PK+ I H SG D
Sbjct: 567 NWDGVIPQPAILKPRPRWTGKQLISMVI----PKE--ISLHSPESSGAQDNADI------ 614
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ DT + I+ GELL G+L KK GS G+VH ++ G E A++ L+ + ++ T
Sbjct: 615 ---PLKDTGLLIQSGELLYGLLKKKNIGSAAGGIVHLSYNELGPEGAMAFLNGVQQVVTY 671
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKAR----RLGTEAACNALGLPLDTDPEIISS 248
+L G ++G+ D + ++ K I+ + RL +A N L
Sbjct: 672 WLLNNGHSIGIGDTVPDKQTIEKVQVHIDTQKAEVARLTAQATANEL------------- 718
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKV---TNNINQVCLPEGLIEPFPANNLQFMVESGA 305
EA + RA + + L+ Q L + +NN M ESG+
Sbjct: 719 ---EALPGM-NVRATFENKVSMALNSARDQAGTTTQRSLKD-------SNNAVTMAESGS 767
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS++N Q++ L+GQ +EGKR RTLP F + SP A GFV+ ++ G+ P
Sbjct: 768 KGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPS 827
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EFFFH MAGREGLIDTAVKT+ +GY+QR LVK LE L+ YD TVR+S +IQ LYGED
Sbjct: 828 EFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDIIQFLYGED 887
Query: 426 GLDV 429
GLD
Sbjct: 888 GLDA 891
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
+ +PGE VGVLAAQSIGEP+TQMTLNTFHFAG NVTLG+PRL+EIL +A K IKTP
Sbjct: 1073 AFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLA-KDIKTP 1131
Query: 630 SMEI 633
SM +
Sbjct: 1132 SMAV 1135
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 70/122 (57%), Gaps = 1/122 (0%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D + Y ND+ + +GIEAA +++E+ NV A G V+ RH++L+ D MT+ G+
Sbjct: 1346 VDPTRTYTNDLWQIVEVFGIEAARSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGSI 1405
Query: 946 VAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
A+ R+GI R + + + +FE +E + +A+ G D R S VMLGQ GTG F
Sbjct: 1406 SAVTRHGINRADTGALMRCSFEETVEILLEAAASGELDDCRGISENVMLGQLAPMGTGNF 1465
Query: 1005 QL 1006
+
Sbjct: 1466 DV 1467
>gi|397135876|gb|AFO11433.1| RNA polymerase I, partial [Hyphopichia heimii]
Length = 872
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 147/419 (35%), Positives = 217/419 (51%), Gaps = 39/419 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S + V Q + P+ P+ G++QD + K++LRDTF+ + MN++Y I
Sbjct: 311 RAELSLICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDTFIEYDQVMNMLY---WIP 367
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N + PP I KP PLW+GKQ+LS I PK G L D S +
Sbjct: 368 NWDGVIPPPAIVKPKPLWSGKQLLSMAI----PK-------GIHLQRFDDGTNLMSPK-- 414
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
D + I GE++ G++ K G+T GL+H V G L S + K+
Sbjct: 415 ------DNGMLIVDGEIMFGVVTKLTVGATGGGLIHTVMREKGPYVCAQLFSAIQKVVNY 468
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + + + T I +A+ E A L+ +P + L+E
Sbjct: 469 WLLHNGFSIGIGDTIADSDTMKTVTTTIQEAKNKVQEIILEAQQNKLEPEPGMT---LRE 525
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
++ + + +V N + NN++ MV SG+KGS +N
Sbjct: 526 SF--------------EHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVTSGSKGSFINI 571
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EGKR + R+LP F + SP + GFV+ ++ G+ PQEFFFH M
Sbjct: 572 SQMSACVGQQIVEGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAM 631
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTK 431
AGREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S +IQ +YGEDG+D T+
Sbjct: 632 AGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFVYGEDGIDGTQ 690
>gi|322702468|gb|EFY94113.1| DNA-directed RNA polymerase III largest subunit [Metarhizium
anisopliae ARSEF 23]
Length = 1364
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 195/691 (28%), Positives = 306/691 (44%), Gaps = 90/691 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+ EA LM V + PK G P+ QD + + LS +D F R + + L
Sbjct: 442 RTEAMSLMGVKHNLITPKSGEPIIAATQDFITAAYLLSYKDRFFDRKTFTTICIHML-DG 500
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVL---------STVIINLTPKDK-VIIRHGELLSGILD 122
T++ PP I P LWTGKQ+ S V++NL + K + R G+ +D
Sbjct: 501 GTQLDLPPPAIIVPKTLWTGKQIFNVLMRPNNRSPVMVNLDARCKSFVTRPGQCPD--MD 558
Query: 123 KKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQY-GLVHAVWDTHGAEHAIS 181
D + +R+ +++ G +DK GS + + + + +G + A+S
Sbjct: 559 PN--------------DGWLVVRNSQVMCGQMDKSTVGSGKKDSIFYVILRDYGPDEAVS 604
Query: 182 LLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDT 241
++ LAKL YL GF++GV D+ ++ +++ A + L+
Sbjct: 605 AMNRLAKLCARYLTNRGFSIGVGDVYPTASLRKEIDHLVSTAYKKCDNIIATFQAGSLEK 664
Query: 242 DPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQF-M 300
P Q E S +L KV + C I +N M
Sbjct: 665 APGCDMEQTLENSIS-------------GVLSKVRQQAGEHC-----INTLSRHNAPLIM 706
Query: 301 VESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMT 360
+SG+KGS +N Q+ L+GQ + G+R R+LP F P + GFV F +
Sbjct: 707 AKSGSKGSDINVAQMVSLVGQQIIGGQRVPDGFQDRSLPHFHKNARQPPSKGFVKNSFYS 766
Query: 361 GIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQV 420
G+ P EF FH ++GREGL+DTAVKT+ +GY+ R L+K LE L+V YD TVR S +++Q
Sbjct: 767 GLLPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSVKYDNTVRTSGGNIVQF 826
Query: 421 LYGEDGLDV----------------TKRQYLT--DKQFSFLEDNIKWICSYKVILNLLKK 462
+G D LD T + LT D + S + I IC +L +
Sbjct: 827 QFGADNLDPADMEGAGTPVQFHRTWTHAESLTRDDDEPSLMPHEIGIICDS--MLEPYRS 884
Query: 463 HPLSLALLLLLTFKSSGKPNFIFSPHRT--KFTMDLLEQWYQLDDKARKKYRKKFKACPQ 520
+ LL ++ H + KF + L + RK
Sbjct: 885 RYVRKGLLHNEELDYEDDSDYGIDEHESGRKFLKSIKSYIDGLASRLRKVRE-------- 936
Query: 521 PLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGV 580
I+ +Q + +++ D K A+ + F + K + PG VG
Sbjct: 937 --IAGYQGNTPSRETAQDHVDRTAKVA-----ATTLRLFIRLCLDKFTKAHVEPGHPVGA 989
Query: 581 LAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMP 640
+ AQSIGEP TQMTL TFHFAG M +T G+PR+ EI+ A++AI TP + P L
Sbjct: 990 VGAQSIGEPGTQMTLKTFHFAGVAGMGMTQGVPRINEII-NASRAISTPVITCPLL---N 1045
Query: 641 KLEKKANRLAKS-MTRITMADVLEKVKIKEW 670
K + +A ++ K+ + + ++D+L +++ EW
Sbjct: 1046 KWQIEAAKVVKARIEKTYVSDILCFIEV-EW 1075
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 3/114 (2%)
Query: 890 KLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMN 949
++ N + GIEAA I E+ V GI DPRH+ L+AD MT+ G + +
Sbjct: 1210 QVRTNSVMECGQVLGIEAARTTIADEIAEVMGYMGI--DPRHMQLLADVMTYKGEVLGIT 1267
Query: 950 RNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTG 1002
R G+ + S + +FE P + + A + D + S ++LGQ GTG
Sbjct: 1268 RFGLSKTRDSVLHLASFEKPADHLFDAVAGMKMDRIEEVSESIILGQAMSVGTG 1321
>gi|440296621|gb|ELP89407.1| DNA-directed RNA polymerase III subunit RPC1, putative [Entamoeba
invadens IP1]
Length = 1381
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 188/619 (30%), Positives = 286/619 (46%), Gaps = 66/619 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM+ + P+ G + QD + L+ +D F+ E M L
Sbjct: 534 RAECLMLMHSAKNLQTPRTGQMIIAETQDFLTVSFLLTAKD-FVVTEEEMMLWSCWFHNA 592
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
EIR P KP LWTGKQ L + + P V I LD ++ G
Sbjct: 593 GVEIRLPTPAYLKPKKLWTGKQ-LYGLALRPNPNFGVDI--------CLDAPSKNYSKEG 643
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKLFT 191
+ D + +H +L+ G +DK GS + GL H + +G + +++ +++
Sbjct: 644 KWMCMKDGWICFKHSQLVCGQIDKAIIGSGNKSGLFHLILRDYGLLDSAKMMAHISRFCA 703
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQ 251
+L GF++G+ D+ R + +++ + A C+ + + I
Sbjct: 704 RFLGDYGFSIGISDVTPSLSLTRMKEELVGEGY-----AKCDQFIKSYNDGKQEIQP--- 755
Query: 252 EAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVN 311
S P+ ++ S L +V + C+ E + P M G+KGS +N
Sbjct: 756 ---GSTPE--QTLEALLNSELSQVRERAGKRCIDELRCDNSPL----VMALCGSKGSVIN 806
Query: 312 TMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHC 371
Q+ +GQ + G R + R+LP F + +P+A GFV F TG+ EFFFH
Sbjct: 807 ISQMIACVGQQTVNGGRVSDGFISRSLPHFPLHSRTPQAKGFVKNSFFTGLNATEFFFHT 866
Query: 372 MAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTK 431
M GREGL+D+AVKT+ +GY+QR L+K LE L VHYD TVR + +++I+ YG+DGLD K
Sbjct: 867 MGGREGLVDSAVKTAETGYMQRRLMKALEDLHVHYDGTVRSAGMTVIEFKYGDDGLDPLK 926
Query: 432 RQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLL-LTFKSSGKPNFIFSPHRT 490
+E +I I +Y+ +L L++H + L + TF S K
Sbjct: 927 -----------VECDIDPI-NYESVLANLQQHQKTEDLYITPKTFDSYYKEALT----GV 970
Query: 491 KFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGR 550
+ DL + QLD KK + +S S+ + L V K
Sbjct: 971 QIVTDLWKS--QLDVFMEKKKSE---------MSEVYTHYSEKSVRDGLCGITVDTMK-- 1017
Query: 551 TDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTL 610
KF + K L ++ PG VG LA QS+GEPSTQM L TFHFAG MN+ L
Sbjct: 1018 -------KFVKVCEQKGLRNICEPGTPVGALAGQSMGEPSTQMVLKTFHFAGVASMNIAL 1070
Query: 611 GIPRLREILMMATKAIKTP 629
G+PR++EI+ A+K I+TP
Sbjct: 1071 GVPRIKEII-NASKKIQTP 1088
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 61/115 (53%), Gaps = 1/115 (0%)
Query: 893 VNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNG 952
N I + GIEAA II E+KNV YG+ +D RHL L++D MT G + + R G
Sbjct: 1249 CNHIMVVEKVLGIEAARSTIISEIKNVMDAYGLSIDIRHLLLLSDLMTFKGVILGITRYG 1308
Query: 953 I-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
I ++ S +FE + + A++ R++ + S +++G + GTGL +
Sbjct: 1309 ISKMKDSVFTFASFERTNDHLFDAAVHSRQNDIAGVSESIIVGNQVGLGTGLMSI 1363
>gi|188532159|gb|ACD63091.1| RNA polymerase II largest subunit [Saruma henryi]
Length = 1009
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 153/456 (33%), Positives = 227/456 (49%), Gaps = 53/456 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ G++QD ++ K++ RDTF+ + +MN++ +
Sbjct: 429 RAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL---MWWE 485
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR----HGELLSGILDKKQFGS 128
+ + + P + KP PLWTGKQV + +I PK ++R H E +G +
Sbjct: 486 DFDGKIPAPAVLKPRPLWTGKQVFNLII----PKQINLLRTSAWHAESETGFITPG---- 537
Query: 129 TQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAK 188
DT V I GELL+G L KK G++ L+H +W+ G + A L
Sbjct: 538 ----------DTQVRIERGELLAGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQW 587
Query: 189 LFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISS 248
L +L + F++G+ D + K I KA+ E A L+ +P
Sbjct: 588 LVNYWLLQNAFSIGIGDTIADAATMEKINDTITKAKNEVKELIKAAHEKQLEAEP----- 642
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGS 308
+ F ++++ D ++ Q L E +NNL+ MV +G+KGS
Sbjct: 643 ----GRTMMESFENRVNQVLNKARDDAGSSA-QKSLSE-------SNNLKAMVTAGSKGS 690
Query: 309 TVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFF 368
+N Q++ +GQ +EGKR RTLP F + P + GFV+ ++ G+ PQEFF
Sbjct: 691 FINISQMTACVGQQNVEGKRIPYGFINRTLPHFTQDDNGPESRGFVENSYLRGLTPQEFF 750
Query: 369 FHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
FH M GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +IQ LYGEDG+D
Sbjct: 751 FHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 810
Query: 429 VT--KRQYLT---------DKQFSFLEDNIKWICSY 453
+ Q L DK F + D+ W SY
Sbjct: 811 AVWIESQKLDSLKMKKAEFDKVFRYEFDDANWNPSY 846
>gi|413915230|gb|AFW21477.1| RNA polymerase II largest subunit [Epichloe festucae]
Length = 1756
Score = 230 bits (586), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 156/428 (36%), Positives = 219/428 (51%), Gaps = 49/428 (11%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S +AE L V + + P+ PL G++QD + KL RDTF+ + MN++
Sbjct: 506 SEETRAEVKELCLVPNNIVSPQKNGPLMGVVQDSLAGAYKLCRRDTFIDKEMVMNMM--- 562
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGS 128
L + N + P I KP P WTGKQ++S VI PK+ I H SG D
Sbjct: 563 LWVPNWDGVIPQPAILKPRPRWTGKQLISMVI----PKE--ISLHSPESSGGQDNADI-- 614
Query: 129 TQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAK 188
+ DT + I+ GELL G+L KK GS G+VH ++ G E A++ L+ + +
Sbjct: 615 -------PLKDTGLLIQSGELLYGLLKKKNIGSAAGGIVHLSYNELGPEGAMAFLNGVQQ 667
Query: 189 LFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKAR----RLGTEAACNALGLPLDTDPE 244
+ T +L G ++G+ D + ++ K I+ + RL +A N L
Sbjct: 668 VVTYWLLNNGHSIGIGDTVPDKQTIEKVQVHIDTQKAEVARLTAQATANEL--------- 718
Query: 245 IISSQLQEAYASIPQFRAQIDRQYKSLLDKV---TNNINQVCLPEGLIEPFPANNLQFMV 301
EA + RA + + L+ Q L + +NN M
Sbjct: 719 -------EALPGM-NVRATFENKVSMALNSARDQAGTTTQRSLKD-------SNNAVTMA 763
Query: 302 ESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTG 361
ESG+KGS++N Q++ L+GQ +EGKR RTLP F + SP A GFV+ ++ G
Sbjct: 764 ESGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRG 823
Query: 362 IQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVL 421
+ P EFFFH MAGREGLIDTAVKT+ +GY+QR LVK LE L+ YD TVR+S +IQ L
Sbjct: 824 LTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDIIQFL 883
Query: 422 YGEDGLDV 429
YGEDGLD
Sbjct: 884 YGEDGLDA 891
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/64 (73%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
S +PGE VGVLAAQSIGEP+TQMTLNTFHFAG NVTLG+PRL+EIL +A K IKTP
Sbjct: 1073 SFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLA-KDIKTP 1131
Query: 630 SMEI 633
SM +
Sbjct: 1132 SMAV 1135
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 70/122 (57%), Gaps = 1/122 (0%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D + Y ND+ + +GIEAA +++E+ NV A G V+ RH++L+ D MT+ GT
Sbjct: 1346 VDPTRTYTNDLWQIVEVFGIEAARSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGTI 1405
Query: 946 VAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
A+ R+GI R + + + +FE +E + +A+ G D R S VMLGQ GTG F
Sbjct: 1406 SAVTRHGINRADTGALMRCSFEETVEILLEAAASGELDDCRGISENVMLGQLAPMGTGNF 1465
Query: 1005 QL 1006
+
Sbjct: 1466 DV 1467
>gi|120561217|gb|ABM26994.1| RNA polymerase II largest subunit, partial [Mucor hiemalis]
Length = 1009
Score = 230 bits (586), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 159/463 (34%), Positives = 244/463 (52%), Gaps = 44/463 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE + + V Q + P+ P+ G++QD + K +LRD F+T+ MN+V + +
Sbjct: 424 RAEVTEICMVPKQIVSPQSNKPVMGIVQDTLCGIRKFTLRDCFMTKDLVMNIV---MWVP 480
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ-- 130
+ + PP I KP P+WTGKQ++S VI PK ++ + F ST
Sbjct: 481 SWDGYIPPPAILKPKPMWTGKQIVSMVI----PKG-------------INCQTFHSTHPD 523
Query: 131 -YGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKL 189
+ + DT V I +GEL+ GI+ KK G+ GL+H + + G E A + L ++
Sbjct: 524 GESTLISPGDTRVIIENGELICGIVCKKTVGTAGGGLIHTIMNELGPEAAKNFLGGTQQV 583
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
+L + GF++G+ D + + T II++A++ E A L+ P +
Sbjct: 584 VNYWLLQNGFSIGIGDTIADKVSMATITNIISQAKQRVQEVIITAQQDKLEVQPGMT--- 640
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
L+E+ F A++++ D + Q L E NN++ MV SG+KGS
Sbjct: 641 LRES------FEAKVNQTLNKARDDA-GKMAQNSLKED-------NNVKQMVISGSKGSF 686
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+S +GQ +EGKR RTLP F + SP + GFV+ ++ G+ P EFFF
Sbjct: 687 INISQMSACVGQQNVEGKRIPYGFKFRTLPHFSKDDHSPESRGFVENSYLRGLTPTEFFF 746
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H M GREGLIDTAVKT+ +GY+QR LVK LE + V YD TVR+S +I+ YGEDG+D
Sbjct: 747 HAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDIIEFCYGEDGMDA 806
Query: 430 TKRQYLTDKQFSFLEDNIKWICSYKV-ILNL-LKKHPLSLALL 470
+ + K FS + ++ YK+ ++N KK LS +L
Sbjct: 807 LSVE--SQKFFSLKCNQEEFEKRYKIDVMNKGFKKGALSYNVL 847
>gi|413915238|gb|AFW21481.1| RNA polymerase II largest subunit [Aciculosporium take]
Length = 1761
Score = 230 bits (586), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 154/424 (36%), Positives = 218/424 (51%), Gaps = 49/424 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + + P+ PL G++QD + K+ RDTF+ + MN++ L +
Sbjct: 510 RAEVKELCLVPNNIVSPQKNGPLMGIVQDSLAGAYKICRRDTFIDKEMVMNMM---LWVP 566
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N + P I KP P WTGKQ++S VI PK+ I H SG D
Sbjct: 567 NWDGVIPQPAILKPRPRWTGKQLISMVI----PKE--ISLHSPESSGAQDNADI------ 614
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ DT + I+ GELL G+L KK GS G+VH ++ G E A++ L+ + ++ T
Sbjct: 615 ---PLKDTGLLIQSGELLYGLLRKKNIGSAAGGIVHLSYNELGPEGAMAFLNGVQQVVTY 671
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKAR----RLGTEAACNALGLPLDTDPEIISS 248
+L G ++G+ D + ++ K I+ + RL +A N L
Sbjct: 672 WLLNNGHSIGIGDTVPDKQTIEKVQVHIDTQKAEVARLTAQATANEL------------- 718
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKV---TNNINQVCLPEGLIEPFPANNLQFMVESGA 305
EA + RA + + L+ Q L + +NN M ESG+
Sbjct: 719 ---EALPGM-NVRATFENKVSMALNSARDQAGTTTQRSLKD-------SNNAVTMAESGS 767
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS++N Q++ L+GQ +EGKR RTLP F + SP A GFV+ ++ G+ P
Sbjct: 768 KGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPT 827
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EFFFH MAGREGLIDTAVKT+ +GY+QR LVK LE L+ YD TVR+S +IQ LYGED
Sbjct: 828 EFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDIIQFLYGED 887
Query: 426 GLDV 429
GLD
Sbjct: 888 GLDA 891
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/64 (73%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
S +PGE VGVLAAQSIGEP+TQMTLNTFHFAG NVTLG+PRL+EIL +A K IKTP
Sbjct: 1073 SFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLA-KDIKTP 1131
Query: 630 SMEI 633
SM +
Sbjct: 1132 SMAV 1135
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 70/122 (57%), Gaps = 1/122 (0%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D + Y ND+ + +GIEAA +++E+ NV A G V+ RH++L+ D MT+ G+
Sbjct: 1346 VDPTRTYTNDLWQIVEVFGIEAARSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGSI 1405
Query: 946 VAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
A+ R+GI R + + + +FE +E + +A+ G D R S VMLGQ GTG F
Sbjct: 1406 SAVTRHGINRADTGALMRCSFEETVEILLEAAASGELDDCRGISENVMLGQLAPMGTGNF 1465
Query: 1005 QL 1006
+
Sbjct: 1466 DV 1467
>gi|413915228|gb|AFW21476.1| RNA polymerase II largest subunit [Epichloe festucae]
Length = 1756
Score = 230 bits (586), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 155/424 (36%), Positives = 218/424 (51%), Gaps = 49/424 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + + P+ PL G++QD + KL RDTF+ + MN++ L +
Sbjct: 510 RAEVKELCLVPNNIVSPQKNGPLMGVVQDSLAGAYKLCRRDTFIDKEMVMNMM---LWVP 566
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N + P I KP P WTGKQ++S VI PK+ I H SG D
Sbjct: 567 NWDGVIPQPAILKPRPRWTGKQLISMVI----PKE--ISLHSPESSGGQDNADI------ 614
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ DT + I+ GELL G+L KK GS G+VH ++ G E A++ L+ + ++ T
Sbjct: 615 ---PLKDTGLLIQSGELLYGLLKKKNIGSAAGGIVHLSYNELGPEGAMAFLNGVQQVVTY 671
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKAR----RLGTEAACNALGLPLDTDPEIISS 248
+L G ++G+ D + ++ K I+ + RL +A N L
Sbjct: 672 WLLNNGHSIGIGDTVPDKQTIEKVQVHIDTQKAEVARLTAQATANEL------------- 718
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKV---TNNINQVCLPEGLIEPFPANNLQFMVESGA 305
EA + RA + + L+ Q L + +NN M ESG+
Sbjct: 719 ---EALPGM-NVRATFENKVSMALNSARDQAGTTTQRSLKD-------SNNAVTMAESGS 767
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS++N Q++ L+GQ +EGKR RTLP F + SP A GFV+ ++ G+ P
Sbjct: 768 KGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPT 827
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EFFFH MAGREGLIDTAVKT+ +GY+QR LVK LE L+ YD TVR+S +IQ LYGED
Sbjct: 828 EFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDIIQFLYGED 887
Query: 426 GLDV 429
GLD
Sbjct: 888 GLDA 891
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/64 (73%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
S +PGE VGVLAAQSIGEP+TQMTLNTFHFAG NVTLG+PRL+EIL +A K IKTP
Sbjct: 1073 SFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLA-KDIKTP 1131
Query: 630 SMEI 633
SM +
Sbjct: 1132 SMAV 1135
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 70/122 (57%), Gaps = 1/122 (0%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D + Y ND+ + +GIEAA +++E+ NV A G V+ RH++L+ D MT+ GT
Sbjct: 1346 VDPTRTYTNDLWQIVEVFGIEAARSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGTI 1405
Query: 946 VAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
A+ R+GI R + + + +FE +E + +A+ G D R S VMLGQ GTG F
Sbjct: 1406 SAVTRHGINRADTGALMRCSFEETVEILLEAAASGELDDCRGISENVMLGQLAPMGTGNF 1465
Query: 1005 QL 1006
+
Sbjct: 1466 DV 1467
>gi|413915220|gb|AFW21472.1| RNA polymerase II largest subunit [Epichloe elymi]
Length = 1754
Score = 230 bits (586), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 155/424 (36%), Positives = 218/424 (51%), Gaps = 49/424 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + + P+ PL G++QD + KL RDTF+ + MN++ L +
Sbjct: 510 RAEVKELCLVPNNIVSPQKNGPLMGVVQDSLAGAYKLCRRDTFVDKEMVMNMM---LWVP 566
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N + P I KP P WTGKQ++S VI PK+ I H SG D
Sbjct: 567 NWDGVIPQPAILKPRPRWTGKQLISMVI----PKE--ISLHSPESSGGQDNADI------ 614
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ DT + I+ GELL G+L KK GS G+VH ++ G E A++ L+ + ++ T
Sbjct: 615 ---PLKDTGLLIQSGELLYGLLKKKNIGSAAGGIVHLSYNELGPEGAMAFLNGVQQVVTY 671
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKAR----RLGTEAACNALGLPLDTDPEIISS 248
+L G ++G+ D + ++ K I+ + RL +A N L
Sbjct: 672 WLLNNGHSIGIGDTVPDKQTIEKVQVHIDTQKAEVARLTAQATANEL------------- 718
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKV---TNNINQVCLPEGLIEPFPANNLQFMVESGA 305
EA + RA + + L+ Q L + +NN M ESG+
Sbjct: 719 ---EALPGM-NVRATFENKVSMALNSARDQAGTTTQRSLKD-------SNNAVTMAESGS 767
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS++N Q++ L+GQ +EGKR RTLP F + SP A GFV+ ++ G+ P
Sbjct: 768 KGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPT 827
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EFFFH MAGREGLIDTAVKT+ +GY+QR LVK LE L+ YD TVR+S +IQ LYGED
Sbjct: 828 EFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDIIQFLYGED 887
Query: 426 GLDV 429
GLD
Sbjct: 888 GLDA 891
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
+ +PGE VGVLAAQSIGEP+TQMTLNTFHFAG NVTLG+PRL+EIL +A K IKTP
Sbjct: 1073 AFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLA-KDIKTP 1131
Query: 630 SMEI 633
SM +
Sbjct: 1132 SMAV 1135
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 70/122 (57%), Gaps = 1/122 (0%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D + Y ND+ + +GIEAA +++E+ NV A G V+ RH++L+ D MT+ GT
Sbjct: 1346 VDPTRTYTNDLWQIVEVFGIEAARSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGTI 1405
Query: 946 VAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
A+ R+GI R + + + +FE +E + +A+ G D R S VMLGQ GTG F
Sbjct: 1406 SAVTRHGINRADTGALMRCSFEETVEILLEAAASGELDDCRGISENVMLGQLAPMGTGNF 1465
Query: 1005 QL 1006
+
Sbjct: 1466 DV 1467
>gi|413915218|gb|AFW21471.1| RNA polymerase II largest subunit [Epichloe typhina]
Length = 1746
Score = 229 bits (585), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 155/424 (36%), Positives = 218/424 (51%), Gaps = 49/424 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + + P+ PL G++QD + KL RDTF+ + MN++ L +
Sbjct: 510 RAEVKELCLVPNNIVSPQKNGPLMGVVQDSLAGAYKLCRRDTFVDKEMVMNMM---LWVP 566
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N + P I KP P WTGKQ++S VI PK+ I H SG D
Sbjct: 567 NWDGVIPQPAILKPRPRWTGKQLISMVI----PKE--ISLHSPESSGGQDNADI------ 614
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ DT + I+ GELL G+L KK GS G+VH ++ G E A++ L+ + ++ T
Sbjct: 615 ---PLKDTGLLIQSGELLYGLLKKKNIGSAAGGIVHLSYNELGPEGAMAFLNGVQQVVTY 671
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKAR----RLGTEAACNALGLPLDTDPEIISS 248
+L G ++G+ D + ++ K I+ + RL +A N L
Sbjct: 672 WLLNNGHSIGIGDTVPDKQTIEKVQVHIDTQKAEVARLTAQATANEL------------- 718
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKV---TNNINQVCLPEGLIEPFPANNLQFMVESGA 305
EA + RA + + L+ Q L + +NN M ESG+
Sbjct: 719 ---EALPGM-NVRATFENKVSMALNSARDQAGTTTQRSLKD-------SNNAVTMAESGS 767
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS++N Q++ L+GQ +EGKR RTLP F + SP A GFV+ ++ G+ P
Sbjct: 768 KGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPT 827
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EFFFH MAGREGLIDTAVKT+ +GY+QR LVK LE L+ YD TVR+S +IQ LYGED
Sbjct: 828 EFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDIIQFLYGED 887
Query: 426 GLDV 429
GLD
Sbjct: 888 GLDA 891
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
+ +PGE VGVLAAQSIGEP+TQMTLNTFHFAG NVTLG+PRL+EIL +A K IKTP
Sbjct: 1073 AFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLA-KDIKTP 1131
Query: 630 SMEI 633
SM +
Sbjct: 1132 SMAV 1135
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 70/122 (57%), Gaps = 1/122 (0%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D + Y ND+ + +GIEAA +++E+ NV A G V+ RH++L+ D MT+ GT
Sbjct: 1346 VDPTRTYTNDLWQIVEVFGIEAARSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGTI 1405
Query: 946 VAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
A+ R+GI R + + + +FE +E + +A+ G D R S VMLGQ GTG F
Sbjct: 1406 SAVTRHGINRADTGALMRCSFEETVEILLEAAASGELDDCRGISENVMLGQLAPMGTGNF 1465
Query: 1005 QL 1006
+
Sbjct: 1466 DV 1467
>gi|413915222|gb|AFW21473.1| RNA polymerase II largest subunit [Epichloe glyceriae]
Length = 1761
Score = 229 bits (585), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 155/424 (36%), Positives = 218/424 (51%), Gaps = 49/424 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + + P+ PL G++QD + KL RDTF+ + MN++ L +
Sbjct: 510 RAEVKELCLVPNNIVSPQKNGPLMGVVQDSLAGAYKLCRRDTFVDKEMVMNMM---LWVP 566
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N + P I KP P WTGKQ++S VI PK+ I H SG D
Sbjct: 567 NWDGVIPQPAILKPRPRWTGKQLISMVI----PKE--ISLHSPESSGGQDNADI------ 614
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ DT + I+ GELL G+L KK GS G+VH ++ G E A++ L+ + ++ T
Sbjct: 615 ---PLKDTGLLIQSGELLYGLLKKKNIGSAAGGIVHLSYNELGPEGAMAFLNGVQQVVTY 671
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKAR----RLGTEAACNALGLPLDTDPEIISS 248
+L G ++G+ D + ++ K I+ + RL +A N L
Sbjct: 672 WLLNNGHSIGIGDTVPDKQTIEKVQVHIDTQKAEVARLTAQATANEL------------- 718
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKV---TNNINQVCLPEGLIEPFPANNLQFMVESGA 305
EA + RA + + L+ Q L + +NN M ESG+
Sbjct: 719 ---EALPGM-NVRATFENKVSMALNSARDQAGTTTQRSLKD-------SNNAVTMAESGS 767
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS++N Q++ L+GQ +EGKR RTLP F + SP A GFV+ ++ G+ P
Sbjct: 768 KGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPT 827
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EFFFH MAGREGLIDTAVKT+ +GY+QR LVK LE L+ YD TVR+S +IQ LYGED
Sbjct: 828 EFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDIIQFLYGED 887
Query: 426 GLDV 429
GLD
Sbjct: 888 GLDA 891
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/64 (73%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
S +PGE VGVLAAQSIGEP+TQMTLNTFHFAG NVTLG+PRL+EIL +A K IKTP
Sbjct: 1073 SFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLA-KDIKTP 1131
Query: 630 SMEI 633
SM +
Sbjct: 1132 SMAV 1135
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 70/122 (57%), Gaps = 1/122 (0%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D + Y ND+ + +GIEAA +++E+ NV A G V+ RH++L+ D MT+ GT
Sbjct: 1346 VDPTRTYTNDLWQIVEVFGIEAARSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGTI 1405
Query: 946 VAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
A+ R+GI R + + + +FE +E + +A+ G D R S VMLGQ GTG F
Sbjct: 1406 SAVTRHGINRADTGALMRCSFEETVEILLEAAASGELDDCRGISENVMLGQLAPMGTGNF 1465
Query: 1005 QL 1006
+
Sbjct: 1466 DV 1467
>gi|397135884|gb|AFO11437.1| RNA polymerase I, partial [Candida multigemmis]
Length = 872
Score = 229 bits (585), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 148/419 (35%), Positives = 222/419 (52%), Gaps = 39/419 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
++E S + V Q + P+ P+ G++QD + K++LRD F+ + MN+ Y I
Sbjct: 311 RSELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDNFIEYDQVMNMSY---WIP 367
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + PP I KP PLW+GKQ+LS I PK + R + ++ + K
Sbjct: 368 DWDGVIPPPAIVKPKPLWSGKQLLSMAI----PKGIHLQRFDDGVNLMSPK--------- 414
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
D+ + I GE++ G++DKK G+T GL+H V G + L S + K+
Sbjct: 415 ------DSGMLIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPQICAQLFSRIQKVVNF 468
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + + T I +A+ E +A L+ +P + L+E
Sbjct: 469 WLLHNGFSIGIGDTIADSSTMKDVTTTIQEAKAKVQEIILDAQRNTLEPEPGMT---LRE 525
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
+ F + R D +V L + NN++ MV SG+KGS +N
Sbjct: 526 S------FEHNVSRILNQARD-TAGRTAEVNLKD-------LNNVKQMVVSGSKGSFINI 571
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EGKR S R+LP F + SP + GFV+ ++ G+ PQEFFFH M
Sbjct: 572 SQMSACVGQQIVEGKRIPFGFSDRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAM 631
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTK 431
AGREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S +IQ +YGEDG+D T+
Sbjct: 632 AGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFVYGEDGIDGTQ 690
>gi|413915226|gb|AFW21475.1| RNA polymerase II largest subunit [Epichloe amarillans]
Length = 1752
Score = 229 bits (585), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 155/424 (36%), Positives = 218/424 (51%), Gaps = 49/424 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + + P+ PL G++QD + KL RDTF+ + MN++ L +
Sbjct: 510 RAEVKELCLVPNNIVSPQKNGPLMGVVQDSLAGAYKLCRRDTFVDKEMVMNMM---LWVP 566
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N + P I KP P WTGKQ++S VI PK+ I H SG D
Sbjct: 567 NWDGVIPQPAILKPRPRWTGKQLISMVI----PKE--ISLHSPESSGGQDNADI------ 614
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ DT + I+ GELL G+L KK GS G+VH ++ G E A++ L+ + ++ T
Sbjct: 615 ---PLKDTGLLIQSGELLYGLLKKKNIGSAAGGIVHLSYNELGPEGAMAFLNGVQQVVTY 671
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKAR----RLGTEAACNALGLPLDTDPEIISS 248
+L G ++G+ D + ++ K I+ + RL +A N L
Sbjct: 672 WLLNNGHSIGIGDTVPDKQTIEKVQVHIDTQKAEVARLTAQATANEL------------- 718
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKV---TNNINQVCLPEGLIEPFPANNLQFMVESGA 305
EA + RA + + L+ Q L + +NN M ESG+
Sbjct: 719 ---EALPGM-NVRATFENKVSMALNSARDQAGTTTQRSLKD-------SNNAVTMAESGS 767
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS++N Q++ L+GQ +EGKR RTLP F + SP A GFV+ ++ G+ P
Sbjct: 768 KGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPT 827
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EFFFH MAGREGLIDTAVKT+ +GY+QR LVK LE L+ YD TVR+S +IQ LYGED
Sbjct: 828 EFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDIIQFLYGED 887
Query: 426 GLDV 429
GLD
Sbjct: 888 GLDA 891
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/64 (73%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
S +PGE VGVLAAQSIGEP+TQMTLNTFHFAG NVTLG+PRL+EIL +A K IKTP
Sbjct: 1073 SFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLA-KDIKTP 1131
Query: 630 SMEI 633
SM +
Sbjct: 1132 SMAV 1135
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 70/122 (57%), Gaps = 1/122 (0%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D + Y ND+ + +GIEAA +++E+ NV A G V+ RH++L+ D MT+ GT
Sbjct: 1346 VDPTRTYTNDLWQIVEVFGIEAARSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGTI 1405
Query: 946 VAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
A+ R+GI R + + + +FE +E + +A+ G D R S VMLGQ GTG F
Sbjct: 1406 SAVTRHGINRADTGALMRCSFEETVEILLEAAASGELDDCRGISENVMLGQLAPMGTGNF 1465
Query: 1005 QL 1006
+
Sbjct: 1466 DV 1467
>gi|302141712|emb|CBI18915.3| unnamed protein product [Vitis vinifera]
Length = 1565
Score = 229 bits (585), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 155/459 (33%), Positives = 233/459 (50%), Gaps = 59/459 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ G++QD ++ K++ RDTF+ + +MN++ +
Sbjct: 559 RAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL---MWWE 615
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR----HGELLSGILDKKQFGS 128
+ + + P I KP PLWTGKQV + +I PK ++R H E +G +
Sbjct: 616 DFDGKIPAPAILKPRPLWTGKQVFNLII----PKQINLLRTSAWHSESETGFITPG---- 667
Query: 129 TQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAK 188
DT V I GELL+G L KK G++ L+H +W+ G + A L
Sbjct: 668 ----------DTQVRIEKGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQW 717
Query: 189 LFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISS 248
L +L + GF++G+ D + K + I+KA+ E A L+ +P
Sbjct: 718 LVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQERQLEAEP---GR 774
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKVTNNIN---QVCLPEGLIEPFPANNLQFMVESGA 305
+ E++ + + +L+K ++ Q L E +NNL+ MV +G+
Sbjct: 775 TMMESF----------ENRVNQVLNKARDDAGSSAQKSLSE-------SNNLKAMVTAGS 817
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS +N Q++ +GQ +EGKR RTLP F + P + GFV+ ++ G+ PQ
Sbjct: 818 KGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQ 877
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EFFFH M GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +IQ LYGED
Sbjct: 878 EFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGED 937
Query: 426 GLDVT--KRQYLT---------DKQFSFLEDNIKWICSY 453
G+D + Q L D+ F + D+ W SY
Sbjct: 938 GMDAVWIETQKLDSLKMKKGEFDRVFKYEIDDENWNPSY 976
Score = 103 bits (257), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 72/105 (68%), Gaps = 2/105 (1%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
L SL PGE +G +AAQSIGEP+TQMTLNTFH+AG NVTLG+PRLREI+ +A K IK
Sbjct: 1002 LQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA-KKIK 1060
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKV-KIKEWL 671
TPS+ + PD+ K +++A + ++ T+ V + KI WL
Sbjct: 1061 TPSLSVYLKPDVSKTKERAKNVQCALEYTTLRSVTQATEKISPWL 1105
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 74/136 (54%), Gaps = 2/136 (1%)
Query: 868 LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 927
+L T+G+N+ + + + D + N + + GIEA R ++ E++ V + G V
Sbjct: 1136 MLDTEGVNLLAVMCHEDV-DARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYV 1194
Query: 928 DPRHLSLVADYMTHSGTYVAMNRNGIRLNPSF-IQKMTFEMPLEKIRQASMQGREDSLRA 986
+ RHL+++ D MT+ G +A+ R+GI N + + + +FE ++ + A++ D LR
Sbjct: 1195 NYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDFLRG 1254
Query: 987 PSARVMLGQECRQGTG 1002
+ +MLGQ GTG
Sbjct: 1255 VTENIMLGQLAPIGTG 1270
>gi|33326211|gb|AAQ08515.1| RNA polymerase II largest subunit [Zea mays]
Length = 1009
Score = 229 bits (585), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 146/418 (34%), Positives = 216/418 (51%), Gaps = 34/418 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ G++QD ++ K++ RDT + + +MN++ +
Sbjct: 429 RAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNIL---MWWQ 485
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + + PTI KP P+WTGKQV + +I PK +IR S +++ G G
Sbjct: 486 DFDGKIPAPTILKPRPIWTGKQVFNLII----PKQINLIR----FSAWHSEEEKGFITPG 537
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
DT V I GELLSG L KK G+ L+H +W+ G + A L L
Sbjct: 538 ------DTMVRIEKGELLSGTLCKKSLGTGSGSLIHVIWEEVGPDAARKFLGHTQWLVNY 591
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L + GF++G+ D + I+KA+ E A L+ +P
Sbjct: 592 WLLQNGFSIGIGDTIADASTMETINDTISKAKNAVKELIKKAHEKQLEAEP--------- 642
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
+ F ++++ D ++ Q L E +NNL+ MV +G+KGS +N
Sbjct: 643 GRTMMESFENRVNQVLNKARDDAGSSA-QNSLSE-------SNNLKAMVTAGSKGSFINI 694
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q++ +GQ +EGKR RTLP F + P + GFV+ ++ G+ PQEFFFH M
Sbjct: 695 SQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 754
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVT 430
GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +IQ LYGEDG+D
Sbjct: 755 GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAV 812
>gi|357483939|ref|XP_003612256.1| DNA-directed RNA polymerase [Medicago truncatula]
gi|355513591|gb|AES95214.1| DNA-directed RNA polymerase [Medicago truncatula]
Length = 1864
Score = 229 bits (585), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 152/452 (33%), Positives = 231/452 (51%), Gaps = 45/452 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ G++QD ++ K++ RDTF+++ +MN++ +
Sbjct: 529 RAEVLELMMVPKCIVSPQANRPVMGIVQDSLLGCRKITKRDTFISKDVFMNIL---MWWE 585
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + + PTI KP PLWTGKQV + +I PK +IR+ S ++ + G G
Sbjct: 586 DFDGKVPAPTILKPEPLWTGKQVFNLII----PKQINLIRY----SSWHNENERGPITPG 637
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
DT V I GELL+G L KK G+ L+H +W+ G + A L L
Sbjct: 638 ------DTMVRIEKGELLTGTLCKKTLGTGTGSLIHVIWEEVGPDAARKFLGHTQWLVNY 691
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L + F++G+ D + + I++A+ + A L+ +P
Sbjct: 692 WLLQQAFSIGIGDTIADASTMETINQTISQAKDKVKQLIREAQEKKLEAEP--------- 742
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
+ F ++++ D N+ Q L E +NNL+ MV +G+KGS +N
Sbjct: 743 GRTMMDSFENRVNQTLNRARDDAGNSA-QKSLSE-------SNNLKAMVTAGSKGSFINI 794
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q++ +GQ +EGKR RTLP F + P + GFV+ ++ G+ PQEFFFH M
Sbjct: 795 SQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 854
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVT-- 430
GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +IQ LYGEDG+D
Sbjct: 855 GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWI 914
Query: 431 KRQYLT---------DKQFSFLEDNIKWICSY 453
+ Q L D+ F + D+ W +Y
Sbjct: 915 ETQKLDSLKMKKTDFDRAFRYEFDDENWKPTY 946
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%), Gaps = 3/108 (2%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
L SL GE +G +AAQSIGEP+TQMTLNTFH+AG NVTLG+PRLREI+ +A K IK
Sbjct: 1091 LQSLVASGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA-KRIK 1149
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISP 675
TPS+ + P++ K +++A + ++ T+ V + ++ W + P
Sbjct: 1150 TPSLSVYLKPEVCKTKERAKNVQCALEYTTLRSVTQATEV--WYDPDP 1195
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 85/165 (51%), Gaps = 8/165 (4%)
Query: 860 FEEKES-----KHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIR 914
F+E E + +L T+G+N+ + + + D + N + + GIEA R ++
Sbjct: 1330 FDENEGFKPHEEWMLDTEGVNLLAVMCHEDV-DAKRTTSNHLIEVIEVLGIEAVRRSLLD 1388
Query: 915 EVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSF-IQKMTFEMPLEKIR 973
E++ V + G V+ RHL+++ D MT+ G +A+ R+GI N + + + +FE ++ +
Sbjct: 1389 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNETGPMMRCSFEETVDILL 1448
Query: 974 QASMQGREDSLRAPSARVMLGQECRQGTG-LFQLRNREKKKKKVE 1017
A++ D LR + +MLGQ GTG L N E K +E
Sbjct: 1449 DAAVYAETDHLRGVTENIMLGQLAPIGTGECALLLNDEMLKNAIE 1493
>gi|33326209|gb|AAQ08514.1| RNA polymerase II largest subunit [Welwitschia mirabilis]
Length = 1013
Score = 229 bits (585), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 147/418 (35%), Positives = 216/418 (51%), Gaps = 34/418 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ G++QD ++ K++ DTF + +MN++ +
Sbjct: 433 RAEVMELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKVTKGDTFTEKDVFMNIL---MWWE 489
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
E + P I KP P+WTGKQV + +I PK +IR+ S ++ + G G
Sbjct: 490 EFEGKIPNPAILKPRPIWTGKQVFNLII----PKQINLIRY----SAWHNESEKGFPTPG 541
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
DT V I GE+LSG L KK GS+ L+H +W+ G + A L L
Sbjct: 542 ------DTVVRIEKGEVLSGTLCKKTLGSSSGSLIHVIWEEVGPDAARKFLGHTQWLVNY 595
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L + GF++G+ D + K + I A+ + A L+ +P
Sbjct: 596 WLLQQGFSIGIGDTIADAATMEKINETIANAKIKVQQLIEKAQEKKLEAEP--------- 646
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
+ F Q+++ D N+ Q L E +NNL+ MV +G+KGS +N
Sbjct: 647 GRTMMESFENQVNQVLNKARDDAGNSA-QKSLSE-------SNNLKAMVTAGSKGSFINI 698
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q++ +GQ +EGKR +GRTLP F + P + GFV+ ++ G+ PQEFFFH M
Sbjct: 699 SQMTACVGQQNVEGKRIPYGFNGRTLPHFTKDDKGPESRGFVENSYLRGLTPQEFFFHAM 758
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVT 430
GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S + Q LYGEDG+D
Sbjct: 759 GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVTQFLYGEDGMDAV 816
>gi|219879765|gb|AAR15052.2| RNA polymerase II largest subunit [Peripatus sp. Per3]
Length = 515
Score = 229 bits (584), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 151/422 (35%), Positives = 217/422 (51%), Gaps = 30/422 (7%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE + ++ V Q + P+ P+ G++QD + + K++ RD FL + E MNL+ + +
Sbjct: 42 RAEVTEMIMVPRQIITPQSNRPVMGIVQDTLTAVRKMTKRDVFLEKEEMMNLL---MWLP 98
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + + P I KP PLWTGKQ+ S VI P + +IR D + G
Sbjct: 99 SWDGKIPQPAILKPKPLWTGKQIFSLVI----PGNVNLIRTHSTHPDNEDDGPYKWISPG 154
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
DT V I HG+L+SGIL KK G++ LVH V G E A L + +
Sbjct: 155 ------DTKVLIEHGDLISGILCKKTLGTSSGSLVHIVMLELGHEVAGQLYGNIQTVVNN 208
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L G T+G+ D + + I KA++ E A L+ P + L++
Sbjct: 209 WLLIEGHTIGIGDTIADPQTYIDIQDSIKKAKQDVIEVIEKAHNDELEPTP---GNTLRQ 265
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
F Q++R DK T Q L E NN + MV SGAKGS +N
Sbjct: 266 T------FENQVNRILNDARDK-TGGSAQKSLSE-------FNNFKAMVVSGAKGSKINI 311
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+ +GQ +EGKR RTLP F+ + P + GFV+ ++ G+ P EFFFH M
Sbjct: 312 SQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHSM 371
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKR 432
GREGLIDTAVKT+ +GY+QR L+K +E + V YD TVR+S L+Q+ YGEDGLD
Sbjct: 372 GGREGLIDTAVKTAETGYIQRRLIKAMESVMVAYDGTVRNSQQYLVQLRYGEDGLDAVHV 431
Query: 433 QY 434
++
Sbjct: 432 EF 433
>gi|225678717|gb|EEH17001.1| DNA-directed RNA polymerase III subunit RPC1 [Paracoccidioides
brasiliensis Pb03]
Length = 1449
Score = 229 bits (584), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 202/707 (28%), Positives = 321/707 (45%), Gaps = 95/707 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + + PK+G P+ IQD + + LS ++ F R + ++ L +
Sbjct: 521 RAEAMELMGVKNNLVTPKNGEPIISAIQDFITAAYMLSSKNVFYDRKTFTHVCLYML-LP 579
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
T PP+I KP LWTGKQV + I+ KD ++ + L + + K T
Sbjct: 580 GTRFDLPPPSILKPQMLWTGKQVFN--ILMRPNKDSPVLVN--LDAACREFKAPKGTPRD 635
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLV-HAVWDTHGAEHAISLLSCLAKLFT 191
L D + IR+ E++ G++DK GS + V + + +G A ++ L++L
Sbjct: 636 L--DANDRWLCIRNSEVMCGVMDKYTIGSGKKDSVFYVMLRDYGPAIAAEGMNRLSRLCA 693
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQ 251
++ +GF++G+ D+ ++ +++ A A C+ + + S +L+
Sbjct: 694 RWITDLGFSIGITDVYPGDRLLEEKKELVEHAY-----AQCD------EVIQKFKSGKLE 742
Query: 252 EAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVN 311
+A Q ++ +L KV +C+ E N M SG+KGS +N
Sbjct: 743 KAPGCDEQM--TMENIISGILSKVRQQAGDLCISE----LSRWNTPLIMATSGSKGSNIN 796
Query: 312 TMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHC 371
Q+ L+GQ + G+R RTLP F + P A GFV F +G+ P EF FH
Sbjct: 797 VAQMVALVGQQIIGGQRVQDGFQDRTLPHFPKHARQPPAKGFVQNSFFSGLTPTEFLFHA 856
Query: 372 MAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVT- 430
++GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR+S S++Q YG+D LD
Sbjct: 857 ISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTRYDGTVRNSSSSIVQFQYGDDKLDPVD 916
Query: 431 ----KRQYLTDKQFS-------------FLEDNIKWICSYKVILNLLKKHPLSLALLLLL 473
R D+ F+ L D I +C +LL K SL L+
Sbjct: 917 MEGNARPVNFDRTFTHSEVTTFDNSDKGLLPDEIMTLCQ-----SLLAKERASLDRYDLM 971
Query: 474 TFKSSGKPNFIFSPHRTKFTMDLLEQ----WYQLDDKARKKYRK--KFKACPQPLISTFQ 527
N + R+ +D LE ++D K K +
Sbjct: 972 G-------NRLDYMDRSDNGIDQLESARDYLQSIEDYISSKAEKLRSIDGGNNNGQGGGR 1024
Query: 528 PDAHFGSISEN-----LADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLA 582
H IS + +VKY K + + H VG +
Sbjct: 1025 GINHTAKISARTLAAFITSCLVKYKKAQVEPGHA---------------------VGAVG 1063
Query: 583 AQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKL 642
AQSIGEP TQMTL TFHFAG M++T G+PR++EI+ A+K I TP + + K
Sbjct: 1064 AQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEII-NASKEISTPVITCQLV---NKG 1119
Query: 643 EKKANRLAKSMTRIT-MADVLEKVKIKEWLEISPEPHMNYQMKFCFI 688
+ +A ++ K T M D++ ++ ++W + ++N ++ F I
Sbjct: 1120 DLRAAQIVKGRVEKTFMRDIIYYIE-EDW--TGNDAYINIKIDFSTI 1163
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 3/122 (2%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D N+I GIEAA I+ E+ V + +DPRH+ L+AD MT+ G
Sbjct: 1278 IDGRNTRTNNIMETRLVLGIEAARTTIVEEIGEVMK--DMAIDPRHMQLLADVMTYKGEV 1335
Query: 946 VAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
+ + R G+ ++ S +Q +FE + + A GR D + S +++G+ GTG
Sbjct: 1336 LGITRFGLAKMRDSVLQLASFEKTADHLFDAGGAGRTDLIEGVSECIIVGKGISLGTGSM 1395
Query: 1005 QL 1006
++
Sbjct: 1396 EV 1397
>gi|413915224|gb|AFW21474.1| RNA polymerase II largest subunit [Epichloe typhina]
Length = 1746
Score = 229 bits (584), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 155/424 (36%), Positives = 218/424 (51%), Gaps = 49/424 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + + P+ PL G++QD + KL RDTF+ + MN++ L +
Sbjct: 510 RAEVKELCLVPNNIVSPQKNGPLMGVVQDSLAGAYKLCRRDTFVDKEMVMNMM---LWVP 566
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N + P I KP P WTGKQ++S VI PK+ I H SG D
Sbjct: 567 NWDGVIPQPAILKPRPRWTGKQLISMVI----PKE--ISLHSPESSGGQDNADI------ 614
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ DT + I+ GELL G+L KK GS G+VH ++ G E A++ L+ + ++ T
Sbjct: 615 ---PLKDTGLLIQSGELLYGLLKKKNIGSAAGGIVHLSYNELGPEGAMAFLNGVQQVVTY 671
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKAR----RLGTEAACNALGLPLDTDPEIISS 248
+L G ++G+ D + ++ K I+ + RL +A N L
Sbjct: 672 WLLNNGHSIGIGDTVPDKQTIEKVQVHIDTQKAEVARLTAQATANEL------------- 718
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKV---TNNINQVCLPEGLIEPFPANNLQFMVESGA 305
EA + RA + + L+ Q L + +NN M ESG+
Sbjct: 719 ---EALPGM-NVRATFENKVSMALNSARDQAGTTTQRSLKD-------SNNAVTMAESGS 767
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS++N Q++ L+GQ +EGKR RTLP F + SP A GFV+ ++ G+ P
Sbjct: 768 KGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPT 827
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EFFFH MAGREGLIDTAVKT+ +GY+QR LVK LE L+ YD TVR+S +IQ LYGED
Sbjct: 828 EFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDIIQFLYGED 887
Query: 426 GLDV 429
GLD
Sbjct: 888 GLDA 891
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
+ +PGE VGVLAAQSIGEP+TQMTLNTFHFAG NVTLG+PRL+EIL +A K IKTP
Sbjct: 1073 AFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLA-KDIKTP 1131
Query: 630 SMEI 633
SM +
Sbjct: 1132 SMAV 1135
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 70/122 (57%), Gaps = 1/122 (0%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D + Y ND+ + +GIEAA +++E+ NV A G V+ RH++L+ D MT+ GT
Sbjct: 1346 VDPTRTYTNDLWQIVEVFGIEAARSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGTI 1405
Query: 946 VAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
A+ R+GI R + + + +FE +E + +A+ G D R S VMLGQ GTG F
Sbjct: 1406 SAVTRHGINRADTGALMRCSFEETVEILLEAAASGELDDCRGISENVMLGQLAPMGTGNF 1465
Query: 1005 QL 1006
+
Sbjct: 1466 DV 1467
>gi|12642618|gb|AAK00313.1|AF315823_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Stylonychia
mytilus]
Length = 1678
Score = 229 bits (584), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 150/421 (35%), Positives = 219/421 (52%), Gaps = 42/421 (9%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S+ AE +M V +Q + P+ P+ G++QD ++ +L+DTF+ + LV Q
Sbjct: 395 SYETMAEIKEIMAVPNQIVSPQSNKPVMGIVQDSLLGVMLFTLKDTFIEKE----LVMQL 450
Query: 69 LCILNTEIRTLP-PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
L E P PTI KP PLWTGKQ+ S +I ++ L + +KK
Sbjct: 451 LMWAKYEDDKFPMPTILKPRPLWTGKQIFSLIIPDIN------------LQKVGEKK--- 495
Query: 128 STQYGLV-HAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCL 186
GL+ + D ++ IR GEL+ G L K GS+ G++H +W G LS
Sbjct: 496 ----GLIWDSAGDLNILIRKGELICGNLTKGTIGSSSGGMIHIIWKEKGPYCCRDFLSNT 551
Query: 187 AKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEII 246
+ +L + GFT+GV+DI+ ++E +K + K +R T+ A L + P
Sbjct: 552 QLIINNWLHQNGFTVGVQDIIAKKEIVQKIRDSMTKFKRDVTKIQQKAQLGKLKSQPG-- 609
Query: 247 SSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAK 306
S ++ AS+ Q L+K ++ C L + N L+ MV +G+K
Sbjct: 610 KSMMESFEASVNQ-----------CLNKARDD----CGNMALADLSSWNRLKAMVYAGSK 654
Query: 307 GSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQE 366
GS +N QI +GQ +EGKR R+LP F + P + GFV+ ++ G+ PQE
Sbjct: 655 GSNLNISQIMACVGQQNVEGKRIPFGFYKRSLPHFSKDDFGPESKGFVENCYLNGLTPQE 714
Query: 367 FFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDG 426
FFFH M GREGLIDTAVKT+ +GY+QR L+K LE + V YD TVR S +IQ LYGEDG
Sbjct: 715 FFFHAMGGREGLIDTAVKTAETGYIQRRLIKALEDVMVKYDGTVRTSKEQIIQFLYGEDG 774
Query: 427 L 427
+
Sbjct: 775 M 775
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/99 (53%), Positives = 68/99 (68%), Gaps = 3/99 (3%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
+L NPGE VG + AQS+GEP+TQMTLNTFHFAG NVTLG+PRL+EI+ +A K IKTP
Sbjct: 972 ALVNPGEMVGSIGAQSMGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVA-KNIKTP 1030
Query: 630 SMEIPFLPDMPKL-EKKANRLAKSMTRITMADVLEKVKI 667
SM+I FL D K E+ A + + T+ V++ I
Sbjct: 1031 SMKI-FLKDKDKQDERIATIIGGRIEHTTLCHVVKSSAI 1068
Score = 77.4 bits (189), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 79/140 (56%), Gaps = 2/140 (1%)
Query: 868 LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 927
L++TDG+ + + + + K NDI + GIEA +I E++ V + YGI V
Sbjct: 1219 LIETDGVALQKVLGLEGI-NYKKTVSNDIIEILRVLGIEAVRMSLINELRFVLSSYGIYV 1277
Query: 928 DPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRA 986
+ RHLS + D MT G A+ R+GI R++ S ++K +FE +E + +A++ D L+
Sbjct: 1278 NYRHLSTLCDVMTQRGILTAITRHGINRVDSSPLRKCSFEETVEILLEAAVFAETDPLKG 1337
Query: 987 PSARVMLGQECRQGTGLFQL 1006
+ +++GQ GTG F++
Sbjct: 1338 ITENIIMGQLAPFGTGCFEI 1357
>gi|329132889|gb|AEB78335.1| Rpb1, partial [Jakoba libera]
Length = 1040
Score = 229 bits (584), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 150/421 (35%), Positives = 215/421 (51%), Gaps = 37/421 (8%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S KAE LM + + PK SP+ GL+QD +++ +++LRD FL R +MN
Sbjct: 411 SLLTKAELLELMMIPKNMISPKSNSPVMGLVQDSLLACRRITLRDVFLERDHFMN----C 466
Query: 69 LCILNTEIRTLP-PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
L ++ LP P I KP PLWTGKQ+ S ++ KV +R L K
Sbjct: 467 LMWVDDFDGQLPMPAILKPKPLWTGKQLFSQIL------PKVNLR--------LRSKDHP 512
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
++ LV + DT V I GELL+G K G++Q LVH V+ G E ++ +
Sbjct: 513 RSENTLV-SPGDTQVIIEQGELLAGKCCKNTMGTSQGSLVHVVYTEQGPEVCARMMGQVQ 571
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIIS 247
+L +L VGF++G+ D + + R T+ I ++ T L+ P
Sbjct: 572 RLVNYWLLTVGFSIGIGDCVPDEITMRTITEAITDDKKQVTGVIKELHKRKLEKKP---- 627
Query: 248 SQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKG 307
+ F A ++ + DK N E L E NN + MV +G+KG
Sbjct: 628 -----GLTLLESFEAVVNDKLNQARDKAGN-----AALESLSE---RNNFKNMVTAGSKG 674
Query: 308 STVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEF 367
+ +N Q+ +GQ +EG+R RTLP F P + GFV +++G+ PQEF
Sbjct: 675 NELNISQVIACVGQQNVEGRRIPFGFRNRTLPHFRQENYGPESKGFVSNSYLSGLTPQEF 734
Query: 368 FFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL 427
FFH M GREG+IDTAVKTS +GY+QR LVK +E + V YD TVRD+ ++Q +YGEDGL
Sbjct: 735 FFHSMGGREGIIDTAVKTSETGYIQRRLVKAMEDIMVRYDGTVRDARGKVLQFVYGEDGL 794
Query: 428 D 428
D
Sbjct: 795 D 795
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 36/44 (81%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIP 613
+L PGE VGV+AAQS+GEP+TQMTLNTFHFAG NVT G+P
Sbjct: 996 ALITPGECVGVIAAQSVGEPATQMTLNTFHFAGVSAKNVTXGVP 1039
>gi|413915248|gb|AFW21486.1| RNA polymerase II largest subunit [Neotyphodium aotearoae]
Length = 1737
Score = 229 bits (584), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 155/424 (36%), Positives = 218/424 (51%), Gaps = 49/424 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + + P+ PL G++QD + KL RDTF+ + MN++ L +
Sbjct: 510 RAEVKELCLVPNNIVSPQKNGPLMGVVQDSLAGAYKLCRRDTFVDKEMVMNMM---LWVP 566
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N + P I KP P WTGKQ++S VI PK+ I H SG D
Sbjct: 567 NWDGVIPQPAILKPRPRWTGKQLISMVI----PKE--ISLHSPESSGGHDNADI------ 614
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ DT + I+ GELL G+L KK GS G+VH ++ G E A++ L+ + ++ T
Sbjct: 615 ---PLKDTGLLIQSGELLYGLLKKKNIGSAAGGIVHLSYNELGPEGAMAFLNGVQQVVTY 671
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKAR----RLGTEAACNALGLPLDTDPEIISS 248
+L G ++G+ D + ++ K I+ + RL +A N L
Sbjct: 672 WLLNNGHSIGIGDTVPDKQTIEKVQVHIDTQKAEVARLTAQATANEL------------- 718
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKV---TNNINQVCLPEGLIEPFPANNLQFMVESGA 305
EA + RA + + L+ Q L + +NN M ESG+
Sbjct: 719 ---EALPGM-NVRATFENKVSMALNSARDQAGTTTQRSLKD-------SNNAVTMAESGS 767
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS++N Q++ L+GQ +EGKR RTLP F + SP A GFV+ ++ G+ P
Sbjct: 768 KGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPT 827
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EFFFH MAGREGLIDTAVKT+ +GY+QR LVK LE L+ YD TVR+S +IQ LYGED
Sbjct: 828 EFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDIIQFLYGED 887
Query: 426 GLDV 429
GLD
Sbjct: 888 GLDA 891
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
+ +PGE VGVLAAQSIGEP+TQMTLNTFHFAG NVTLG+PRL+EIL +A K IKTP
Sbjct: 1073 AFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLA-KDIKTP 1131
Query: 630 SMEI 633
SM +
Sbjct: 1132 SMAV 1135
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 70/122 (57%), Gaps = 1/122 (0%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D + Y ND+ + +GIEAA +++E+ NV A G V+ RH++L+ D MT+ GT
Sbjct: 1346 VDPTRTYTNDLWQIVEVFGIEAARSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGTI 1405
Query: 946 VAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
A+ R+GI R + + + +FE +E + +A+ G D R S VMLGQ GTG F
Sbjct: 1406 SAVTRHGINRADTGALMRCSFEETVEILLEAAASGELDDCRGISENVMLGQLAPMGTGNF 1465
Query: 1005 QL 1006
+
Sbjct: 1466 DV 1467
>gi|393219057|gb|EJD04545.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Fomitiporia mediterranea MF3/22]
Length = 1782
Score = 229 bits (584), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 149/419 (35%), Positives = 224/419 (53%), Gaps = 45/419 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S + V+ Q + P+ P+ G++QD + K +LRD FL + N++ L +
Sbjct: 542 RAELSQIAWVAKQIISPQANKPVMGIVQDTLCGIRKFTLRDCFLDWQQVQNIL---LWVP 598
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N + PTI KP PLW+GKQ+LS I P+ I R + S
Sbjct: 599 NWDGTIPTPTILKPKPLWSGKQILSLTI----PRGINIYRSPDPKSS------------- 641
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ V+D + I +GE++ G+++KK G++Q GL+H + G E +L + L ++
Sbjct: 642 --NPVFDDGMLIENGEIIFGVVEKKTVGASQGGLIHVCFREKGPEATRTLFTGLQQVVNY 699
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + D+K I + ++ + A+ E SS +
Sbjct: 700 WLFHNGFSIGIGDTVA----DKKTMAYITEQIKMRKQNVAKAV--------EDASSDRLK 747
Query: 253 AYASIP---QFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
A + F ++++R+ D + Q L E NN++ MV +G+KGS
Sbjct: 748 AAPGMTIRESFESRVERELNLARDH-SGQYAQKNLKED-------NNVKQMVVAGSKGSF 799
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+S +GQ +EGKR RTLP F + SP A GFV+ ++ G+ PQEFFF
Sbjct: 800 INISQMSVCVGQQSVEGKRIPFGFRHRTLPHFTKDDFSPEARGFVENSYLRGLTPQEFFF 859
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
H MAGREGLIDTAVKT+ +GY+QR LVK LE +TV YD TVR+S LIQ +YGEDG+D
Sbjct: 860 HAMAGREGLIDTAVKTAETGYIQRRLVKALEDVTVCYDGTVRNSLGDLIQFVYGEDGMD 918
Score = 97.4 bits (241), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 68/98 (69%), Gaps = 1/98 (1%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
S+A+PGE G LAAQSIGEP+TQMTLNTFH+AG NVTLG+PRL+EI+ +A K IKTP
Sbjct: 1102 SMAHPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVAEK-IKTP 1160
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKI 667
S+ + P++ ++ +A + + ++ V V+I
Sbjct: 1161 SLTVYLEPEIAAVDTRAKSVQTELAYTSLRTVTAAVEI 1198
Score = 82.8 bits (203), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 84/157 (53%), Gaps = 2/157 (1%)
Query: 851 KLLFLPSNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANR 910
K++ ++ + + +L+TDG+N+ + + D + Y N + GIEAA
Sbjct: 1337 KIVVADDGSIQKGDKEWVLETDGVNLKTVMCIDGV-DWKRTYSNSCVEIFGVLGIEAARA 1395
Query: 911 VIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPL 969
I++E++NV G V+ RHL+L+ D MTH G+ +A+ R+GI R + + + +FE +
Sbjct: 1396 AIMKEMRNVIEFDGSYVNYRHLALLCDLMTHRGSLMAITRHGINRADTGALMRCSFEETV 1455
Query: 970 EKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
E + +A+ G +D + VM GQ GTG F +
Sbjct: 1456 EILMEAAAVGEKDDCHGIAENVMFGQMAPMGTGAFDV 1492
>gi|58395849|gb|AAW72745.1| RNA polymerase II largest subunit [Fomitiporia mediterranea]
Length = 590
Score = 229 bits (584), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 148/419 (35%), Positives = 223/419 (53%), Gaps = 45/419 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S + V+ Q + P+ P+ G++QD + K +LRD FL + N++ L +
Sbjct: 14 RAELSQIAWVAKQIISPQANKPVMGIVQDTLCGIRKFTLRDCFLDWQQVQNIL---LWVP 70
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N + PTI KP PLW+GKQ+LS I P+ I R + S
Sbjct: 71 NWDGTIPTPTILKPKPLWSGKQILSLTI----PRGINIYRSPDPKSS------------- 113
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ V+D + I +GE++ G+++KK G++Q GL+H + G E +L + L ++
Sbjct: 114 --NPVFDDGMLIENGEIIFGVVEKKTVGASQGGLIHVCFREKGPEATRTLFTGLQQVVNY 171
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + D+K I + ++ + A+ E SS +
Sbjct: 172 WLFHNGFSIGIGDTVA----DKKTMAYITEQIKMRKQNVAKAV--------EDASSDRLK 219
Query: 253 AYASIP---QFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
A + F ++++R+ D + Q L E NN++ MV +G+KGS
Sbjct: 220 AAPGMTIRESFESRVERELNLARDH-SGQYAQKNLKED-------NNVKQMVVAGSKGSF 271
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+S +GQ +EGKR RTLP F + SP A GFV+ ++ G+ PQEFFF
Sbjct: 272 INISQMSVCVGQQSVEGKRXPFGFRHRTLPHFTKDDFSPEARGFVENSYLRGLTPQEFFF 331
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
H MAGREGLIDTAVKT+ +GY+QR LVK LE +T YD TVR+S LIQ +YGEDG+D
Sbjct: 332 HAMAGREGLIDTAVKTAETGYIQRRLVKALEDVTXCYDGTVRNSLGDLIQFVYGEDGMD 390
>gi|255579596|ref|XP_002530639.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus
communis]
gi|223529812|gb|EEF31747.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus
communis]
Length = 1855
Score = 229 bits (583), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 152/452 (33%), Positives = 229/452 (50%), Gaps = 45/452 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ G++QD ++ K++ RDTF+ + +MN++ +
Sbjct: 511 RAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL---MWWE 567
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + + P I KP PLWTGKQV + +I PK +IR S ++ G
Sbjct: 568 DFDGKVPAPAILKPRPLWTGKQVFNLII----PKQINLIRTAAWHS---------DSERG 614
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
++ DT V I GELLSG + KK G++ L+H +W+ G + A L L
Sbjct: 615 VITP-GDTLVRIEKGELLSGTVCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNY 673
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L + GF++G+ D + K + I+ A+ E A L+ P
Sbjct: 674 WLLQNGFSIGIGDTIADAATMEKINETISNAKNAVKELIRKAQNKELEPKP--------- 724
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
+ F ++++ D ++ Q L E +NNL+ MV +G+KGS +N
Sbjct: 725 GRTMMESFENEVNQVLNRARDDAGSSA-QKSLSE-------SNNLKAMVTAGSKGSFINI 776
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q++ +GQ +EGKR RTLP F + P + GFV+ ++ G+ PQEFFFH M
Sbjct: 777 SQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 836
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVT-- 430
GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +IQ LYGEDG+D
Sbjct: 837 GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWI 896
Query: 431 KRQYLT---------DKQFSFLEDNIKWICSY 453
+ Q L D+ F + D+ W +Y
Sbjct: 897 ESQKLDSLKMKKSEFDRVFKYELDDENWNPTY 928
Score = 137 bits (344), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 128/446 (28%), Positives = 208/446 (46%), Gaps = 70/446 (15%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
L SL PGE +G +AAQSIGEP+TQMTLNTFH+AG NVTLG+PRLREI+ +A K IK
Sbjct: 1073 LQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA-KKIK 1131
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCF 687
TPS+ I +P+ K +++A + ++ T+ V + ++ W + P + + F
Sbjct: 1132 TPSLSIFLIPECNKTKERAKNVQCALEYTTLRSVTQATEV--WYDPDPMSTI-IEEDVDF 1188
Query: 688 IPAHMYRDKTSVKPSKIIDHFERKFL-KELEVAIAKRAAQGLKNMNIEQSRDQMEDDV-- 744
+ ++ + P KI R L +E+ V A + +N+E +DD+
Sbjct: 1189 VKSYYEMPDEEISPEKISPWLLRIELNREMMVDKKLNMADIAEKINLE-----FDDDLTC 1243
Query: 745 --EDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSER 802
DD E + R+ + +DE + E ND E
Sbjct: 1244 IFNDDNAE------KLILRIRIMNDE-------------APKGELND-----------ES 1273
Query: 803 EEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNLFEE 862
EDD KIE T + ++ + + + + K S K F+E
Sbjct: 1274 AEDDVFLK-----KIESNMLTEMALRGIPDINKVFIKQSKVSK--------------FDE 1314
Query: 863 KES-----KHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVK 917
E + +L T+G+N+ +D + N + + GIEA R ++ E++
Sbjct: 1315 NEGFKTIEEWMLDTEGVNL-LAVMCNENVDARRTTSNHLIEVIEVLGIEAVRRSLLDELR 1373
Query: 918 NVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSF-IQKMTFEMPLEKIRQAS 976
V + G V+ RHL+++ D MT+ G +A+ R+GI N + + + +FE ++ + A+
Sbjct: 1374 VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAA 1433
Query: 977 MQGREDSLRAPSARVMLGQECRQGTG 1002
+ D LR + +MLGQ GTG
Sbjct: 1434 VYAEADYLRGVTENIMLGQLAPIGTG 1459
>gi|120561221|gb|ABM26996.1| RNA polymerase II largest subunit, partial [Funneliformis mosseae]
Length = 1054
Score = 229 bits (583), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 146/419 (34%), Positives = 221/419 (52%), Gaps = 37/419 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAE + V Q + P+ P+ G++QD + + K + RD FL++ MN++ + +
Sbjct: 449 KAEIKEICMVPKQIVSPQSNKPVMGIVQDTLCAIRKFTKRDCFLSKDLVMNIL---MWVK 505
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPK--DKVIIRHGELLSGILDKKQFGSTQ 130
+ + + P I KP+PLWTGKQ+LS +I PK + +RH G G
Sbjct: 506 DWDGKIPIPCILKPIPLWTGKQILSMII----PKGINSXNLRHSTHPDGENTDMSPG--- 558
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLF 190
DT V I GELL GI+ KK G+ Q GL+H + G A L+ +
Sbjct: 559 --------DTKVLIEDGELLCGIVCKKTVGTAQQGLIHVIMQELGPNRAKDFLNGCQAVV 610
Query: 191 TVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQL 250
+L + GF++G+ D + ++ T+ IN A+ E +A L+ P + +
Sbjct: 611 NYWLLQNGFSIGIGDTIADKDTMDSITQTINNAKERVKEVILSAQQNKLECQPGMT---I 667
Query: 251 QEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTV 310
+E+ F Q++++ + D + + L E NN++ MV +G+KGS +
Sbjct: 668 RES------FENQVNKELNTARDSAGRSAEK-SLSED-------NNVKQMVIAGSKGSFI 713
Query: 311 NTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFH 370
N Q++ +GQ +EGKR RTLP F + SP + GFV+ ++ G+ PQEFFFH
Sbjct: 714 NISQMTACVGQQNVEGKRIPYGFKFRTLPHFTKDDHSPESRGFVENSYLRGLTPQEFFFH 773
Query: 371 CMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
M GREGLIDTAVKT+ +GY+QR LVK LE + V YD TVR+S ++Q YGEDG+D
Sbjct: 774 AMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDILQFCYGEDGMDA 832
>gi|346971808|gb|EGY15260.1| DNA-directed RNA polymerase II subunit RPB1 [Verticillium dahliae
VdLs.17]
Length = 1755
Score = 229 bits (583), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 157/452 (34%), Positives = 232/452 (51%), Gaps = 59/452 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + P+ PL G++QD + KL RD FLT+ E MN++ L +
Sbjct: 511 RAEIKELCMVPINIVSPQRNGPLMGIVQDTLAGAYKLCRRDVFLTKEEVMNIM---LWVP 567
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N + P I +P P WTGKQ++S I + L+ + D K+ S
Sbjct: 568 NWDGIIPVPAILRPSPRWTGKQIMSMAIPEIVS-----------LNSLPDTKEDNS---- 612
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
V D + I+ G+L+ G+L KK G+ G+VH V++ HG E A+ L+ + +
Sbjct: 613 ----VKDEGLLIQSGQLMYGLLTKKVIGAASGGIVHIVYNEHGPEAAMKFLNGVQQTVNY 668
Query: 193 YLQRVGFTLGVRDIL--------VRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPE 244
+L GF++G+ D + V+ D ++ ++ RL +A N L + P
Sbjct: 669 WLLHNGFSIGIGDTIPDTLTIEKVQGHIDEQKDEVA----RLTKQATNNEL----EPSPG 720
Query: 245 IISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESG 304
+ ++E F +++ R + DK Q L + NN M SG
Sbjct: 721 M---NIRET------FESKVSRALNTARDKA-GTTTQKSLKD-------LNNAVTMALSG 763
Query: 305 AKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQP 364
+KGS++N Q++ L+GQ +EGKR RTLP F + SP A GFV+ ++ G+ P
Sbjct: 764 SKGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTP 823
Query: 365 QEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGE 424
EFFFH MAGREGLIDTAVKT+ +GY+QR LVK LE ++ YD TVR+S +IQ LYGE
Sbjct: 824 SEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVSAKYDGTVRNSLGDIIQFLYGE 883
Query: 425 DGLDVTKRQYLTDKQFSFLE-DNIKWICSYKV 455
DGLD Y+ ++ FL N K+ YK+
Sbjct: 884 DGLDAI---YIEKQRMDFLNMSNKKFDDRYKL 912
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/95 (53%), Positives = 66/95 (69%), Gaps = 2/95 (2%)
Query: 573 NPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSME 632
+PGE VGVLAAQSIGEP+TQMTLNTFHFAG NVTLG+PRL+EIL +A + IKTPSM
Sbjct: 1074 SPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLA-QNIKTPSMV 1132
Query: 633 IPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKI 667
+ +L + ++ A L ++ T+ V +I
Sbjct: 1133 V-YLSEGNATQEAAKALRSTVEHTTLRSVTAMTEI 1166
Score = 79.7 bits (195), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 68/122 (55%), Gaps = 1/122 (0%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D + Y N + + +GIEAA ++RE+ V A G V+ RHL+L+ D MT+ G
Sbjct: 1342 VDATRTYTNHLWQINEVFGIEAARGALVRELTQVLAFDGSYVNHRHLALLVDVMTYRGGI 1401
Query: 946 VAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
A+ R+GI R + + + +FE +E + +A+ G D R S VMLGQ GTG F
Sbjct: 1402 SAVTRHGINRADTGALMRCSFEETVEILLEAAAVGELDDCRGISENVMLGQMAPMGTGHF 1461
Query: 1005 QL 1006
++
Sbjct: 1462 EV 1463
>gi|397135973|gb|AFO11481.1| RNA polymerase I, partial [Candida caseinolytica]
Length = 872
Score = 229 bits (583), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 147/421 (34%), Positives = 219/421 (52%), Gaps = 45/421 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE + L V Q + P+ P+ G++QD + KL+LRDTFL + MN++ L +
Sbjct: 311 RAELTQLAMVPLQIVSPQSNKPVMGIVQDSLCGIRKLTLRDTFLNYEQVMNVL---LWVP 367
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + + P I KP PLWTGKQ++S I PK +IR I D S +
Sbjct: 368 DWDGQVPIPAIMKPKPLWTGKQIVSLCI----PKGINLIR-------IDDNNPLSSPK-- 414
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
D + I +GE++ G++DKK G+T GLVH + G + + + + +
Sbjct: 415 ------DNGMLIENGEIIFGVVDKKTVGATGGGLVHTIMREKGPQVCCNFFTGIQMVVNY 468
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + R T I A+ + +A L +P + L+E
Sbjct: 469 WLLHNGFSIGIGDTIADAATMRDITNTITAAKEKVQDIIRDAQENRLPAEPGMT---LRE 525
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFP---ANNLQFMVESGAKGST 309
++ KV+ +NQ G NN++ MV +G+KGS
Sbjct: 526 SFEH-----------------KVSQTLNQARDTTGRSAEMSLKDTNNVKQMVTAGSKGSF 568
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+S +GQ +EGKR R+LP F + SP + GF++ ++ G+ PQEFFF
Sbjct: 569 INISQMSACVGQQIVEGKRIPFGFKDRSLPHFTKDDYSPESKGFIENSYLRGLTPQEFFF 628
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H MAGREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S +IQ +YGEDG+D
Sbjct: 629 HAMAGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDVIQFVYGEDGVDG 688
Query: 430 T 430
T
Sbjct: 689 T 689
>gi|297793561|ref|XP_002864665.1| hypothetical protein ARALYDRAFT_496142 [Arabidopsis lyrata subsp.
lyrata]
gi|297310500|gb|EFH40924.1| hypothetical protein ARALYDRAFT_496142 [Arabidopsis lyrata subsp.
lyrata]
Length = 1376
Score = 229 bits (583), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 197/668 (29%), Positives = 303/668 (45%), Gaps = 86/668 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+ EA LM V + PK+G L QD + + ++ +DTF RA + +L+ +
Sbjct: 516 RTEAITLMGVQNNLCTPKNGEILVASTQDFLTTSFLITRKDTFYDRAAF-SLICSYMGDG 574
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
I PTI KP+ LWTGKQ+ S + L P V + ++ + +K F ++G
Sbjct: 575 MDAIDLPTPTILKPIELWTGKQLFSVL---LRPNASVRV----YVTLNVKEKNFKKGEHG 627
Query: 133 L--VHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
V D V R+ EL+SG L K G+ + GL + + + A ++ LAKL
Sbjct: 628 FDETMCVNDGWVYFRNSELISGQLGKATLGNGNKDGLYSILLRDYNSHAAAVCMNRLAKL 687
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
++ GF++G+ D+ +E +++R I + G + +
Sbjct: 688 SARWIGIHGFSIGIDDVQPGEELNKERKDSI----QFGYDQC---------------HRK 728
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQV-------CLPEGLIEPFPANNLQFMVE 302
++E Q +A +D KSL ++T +N + C+ GL N+ M +
Sbjct: 729 IEEFNRGNLQLKAGLD-GAKSLEAEITGILNTIREATGKACM-SGL---HWRNSPLIMSQ 783
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
G+KGS +N Q+ +GQ + G R R+LP F SP A GFV F +G+
Sbjct: 784 CGSKGSPINISQMVACVGQQTVNGHRAPDGFIDRSLPHFPRMSKSPAAKGFVANSFYSGL 843
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
EFFFH M GREGL+DTAVKT+ +GY+ R L+K LE L VHYD TVR++ ++Q Y
Sbjct: 844 TATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDNTVRNASGCILQFTY 903
Query: 423 GEDGLDVTKRQYLTDKQFSF--LEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGK 480
G+DG+D + +F L I+ C + N L LS
Sbjct: 904 GDDGMDPALMEGKDGAPLNFDRLFLKIQATCPPRSHHNYLSSEELS-------------- 949
Query: 481 PNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLA 540
KF +L+ DK+R C + + + +
Sbjct: 950 ---------QKFEEELVRH-----DKSR--------VCTDAFVKSLREFVSLLGVKSAST 987
Query: 541 DSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHF 600
V+ G TD ++ F + + G +G + AQSIGEP TQMTL TFHF
Sbjct: 988 PQVLYKASGVTD-KQLEVFVKICVSRYREKKIEAGTAIGTIGAQSIGEPGTQMTLKTFHF 1046
Query: 601 AGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKS-MTRITMA 659
AG MN+T G+PR+ EI+ A+K I TP + + P LE + R K + + T+
Sbjct: 1047 AGVASMNITQGVPRINEII-NASKNISTPVISAEL--ENP-LELTSARWVKGRIEKTTLG 1102
Query: 660 DVLEKVKI 667
V E +++
Sbjct: 1103 QVAESIEV 1110
Score = 72.8 bits (177), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 69/117 (58%), Gaps = 1/117 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N++ ++ T GIEAA II E+ V +G+ +D RH+ L+AD MT+ G + + R GI
Sbjct: 1244 NNVVEVSKTLGIEAARTTIIDEIGTVMGNHGMSIDIRHMMLLADVMTYRGEVLGIQRTGI 1303
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNR 1009
+++ S + + +FE + + A++ G+ D++ + V++G + GTG+ ++ R
Sbjct: 1304 QKMDKSVLMQASFERTGDHLFSAAISGKVDNIEGVTECVIMGIPMKLGTGILKVLQR 1360
>gi|413915244|gb|AFW21484.1| RNA polymerase II largest subunit [Claviceps paspali]
Length = 1764
Score = 228 bits (582), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 154/424 (36%), Positives = 218/424 (51%), Gaps = 49/424 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + + P+ PL G++QD + KL RDTF+ + MN++ L +
Sbjct: 510 RAEVKELCLVPNNIVSPQKNGPLMGIVQDSLAGAYKLCRRDTFVDKEMVMNMM---LWVP 566
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N + P I KP P WTGKQ++S VI PK+ I H SG D
Sbjct: 567 NWDGVIPQPAILKPRPRWTGKQLISMVI----PKE--ISLHSPESSGGQDNADI------ 614
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ DT + I+ GELL G+L KK GS G+VH ++ G E A++ L+ + ++ T
Sbjct: 615 ---PLKDTGLLIQSGELLYGLLKKKNIGSAAGGIVHLSYNELGPEGAMAFLNGVQQVVTY 671
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKAR----RLGTEAACNALGLPLDTDPEIISS 248
+L G ++G+ D + ++ K I+ + +L +A N L
Sbjct: 672 WLLNNGHSIGIGDTVPDKQTIEKVQVHIDTQKAEVAKLTAQATANEL------------- 718
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKV---TNNINQVCLPEGLIEPFPANNLQFMVESGA 305
EA + RA + + L+ Q L + +NN M ESG+
Sbjct: 719 ---EALPGM-NVRATFENKVSMALNSARDQAGTTTQRSLKD-------SNNAVTMAESGS 767
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS++N Q++ L+GQ +EGKR RTLP F + SP A GFV+ ++ G+ P
Sbjct: 768 KGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPS 827
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EFFFH MAGREGLIDTAVKT+ +GY+QR LVK LE L+ YD TVR+S +IQ LYGED
Sbjct: 828 EFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDIIQFLYGED 887
Query: 426 GLDV 429
GLD
Sbjct: 888 GLDA 891
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/64 (73%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
S +PGE VGVLAAQSIGEP+TQMTLNTFHFAG NVTLG+PRL+EIL +A K IKTP
Sbjct: 1073 SFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLA-KDIKTP 1131
Query: 630 SMEI 633
SM +
Sbjct: 1132 SMAV 1135
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 70/122 (57%), Gaps = 1/122 (0%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D + Y ND+ + +GIEAA +++E+ NV A G V+ RH++L+ D MT+ G+
Sbjct: 1346 VDPTRTYTNDLWQIVEVFGIEAARSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGSI 1405
Query: 946 VAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
A+ R+GI R + + + +FE +E + +A+ G D R S VMLGQ GTG F
Sbjct: 1406 SAVTRHGINRADTGALMRCSFEETVEILLEAAASGELDDCRGISENVMLGQLAPMGTGNF 1465
Query: 1005 QL 1006
+
Sbjct: 1466 DV 1467
>gi|397135878|gb|AFO11434.1| RNA polymerase I, partial [Wickerhamia fluorescens]
Length = 872
Score = 228 bits (582), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 147/419 (35%), Positives = 219/419 (52%), Gaps = 39/419 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
++E S + V Q + P+ P+ G++QD + K++LRD F+ + MN++Y I
Sbjct: 311 RSELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDIFIEYDQVMNMLY---WIP 367
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + PP + KP P+WTGKQ+LS I PK H + G D
Sbjct: 368 DWDGVIPPPAVIKPKPMWTGKQLLSMAI----PKGI----HLQRFDGGKD---------- 409
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ + DT + I GE++ G++DKK G+T GL+H V G L S + K+
Sbjct: 410 -MLSPKDTGMLIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPYVCAQLFSRIQKVVNY 468
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + R T I +A+ E A L+ +P + L+E
Sbjct: 469 WLLHNGFSIGIGDTIADASTMRDVTTTIQEAKDKVQEIILEAQQNTLEPEPGMT---LRE 525
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
++ + + +V N + NN++ MV SG+KGS +N
Sbjct: 526 SF--------------EHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINI 571
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EGKR S R+LP F + SP + GFV+ ++ G+ PQEFFFH M
Sbjct: 572 SQMSACVGQQIVEGKRIPFGFSDRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAM 631
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTK 431
AGREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S +IQ +YGEDG+D T+
Sbjct: 632 AGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDVIQFVYGEDGIDGTQ 690
>gi|389750938|gb|EIM92011.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Stereum hirsutum FP-91666 SS1]
Length = 1703
Score = 228 bits (582), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 152/422 (36%), Positives = 222/422 (52%), Gaps = 51/422 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S + V Q + P+ P+ G++QD + K +LRDTFL + N++ L +
Sbjct: 510 RAELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLDWNQVQNIL---LWVP 566
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + P I KP P+W+GKQ+LS I P+ I R + S
Sbjct: 567 DWDGSVPIPAIIKPKPMWSGKQILSMAI----PRGINIHRSPDPKSA------------- 609
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ V+D + I +GE++ GI+DKK G++Q GLVH V+ G E +L + L +
Sbjct: 610 --NPVFDDGMLIENGEIIFGIVDKKTVGASQGGLVHVVFREKGPEATRTLFTGLQTVVNY 667
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + DRK I + TE N +II +
Sbjct: 668 WLFHNGFSIGIGDTIA----DRKTMAYITQQI---TERKQNVQ--------QIIEDATHD 712
Query: 253 AYASIP------QFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAK 306
S+P F ++++R+ D + Q L E NN++ MV +G+K
Sbjct: 713 RLKSMPGMTIRESFESKVERELNLARDD-SGKYAQKNLKED-------NNVKQMVVAGSK 764
Query: 307 GSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQE 366
GS +N Q+S +GQ +EG+R RTLP F + SP A GFV+ ++ G+ PQE
Sbjct: 765 GSFINISQMSVCVGQQSVEGRRIPFGFRHRTLPHFTKDDFSPEARGFVENSYLRGLTPQE 824
Query: 367 FFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDG 426
FFFH MAGREGLIDTAVKT+ +GY+QR LVK LE + V+YD TVR+S LIQ +YGEDG
Sbjct: 825 FFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMVNYDGTVRNSLGDLIQFVYGEDG 884
Query: 427 LD 428
+D
Sbjct: 885 MD 886
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 121/451 (26%), Positives = 197/451 (43%), Gaps = 71/451 (15%)
Query: 569 LSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKT 628
+S+ NPGE G LAAQSIGEP+TQMTLNTFH+AG NVTLG+PRL+EI+ +AT IKT
Sbjct: 1069 MSVVNPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATN-IKT 1127
Query: 629 PSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCFI 688
PS+ + P+ +A + + + ++ V V+I W + P + + K F+
Sbjct: 1128 PSLTVYLQPEFAAQSSQAKTIQQELAYTSLRTVTASVEI--WYDPDPTSTVIEEDK-VFV 1184
Query: 689 PAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSR--DQMEDDVED 746
+ V+ SKI H + +L LE+ AK + L +M +R + + D+
Sbjct: 1185 ESFFAIPDEEVE-SKI--HLQSPWLLRLELDRAKMIDRKL-DMQFVANRIAESFKTDLFV 1240
Query: 747 DEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDN-----DFEEPEDEERMSE 801
E RV +D+E +E D+++ + Q E+ + ER+
Sbjct: 1241 IWSEDNSEKLVIRCRVLGGADKEDEETDSIEEDIFLRQLENTMLNSVSLRGVKGIERVFM 1300
Query: 802 REED----DNTSNI-GERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLP 856
E D D NI G+ K ++ V +K V+ + +Y C +F
Sbjct: 1301 LEHDKVVTDEKGNITGQGVKEWVLETDGVNLKAVMCMDGVDFTRTYSNS----CVEIF-- 1354
Query: 857 SNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREV 916
++L + + + R +++ + YVN H
Sbjct: 1355 ----------NVLGIEAARAAIMKELRGVIEFDGSYVNYRH------------------- 1385
Query: 917 KNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQA 975
L+L+ D MT G +A+ R+GI R + + + +FE +E + +A
Sbjct: 1386 ---------------LALLCDLMTQRGHLMAITRHGINRADTGALMRSSFEETVEILMEA 1430
Query: 976 SMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+ G D + VM GQ GTG F++
Sbjct: 1431 AAVGERDDCHGIAENVMFGQMAPMGTGAFEV 1461
>gi|218200495|gb|EEC82922.1| hypothetical protein OsI_27866 [Oryza sativa Indica Group]
Length = 1449
Score = 228 bits (582), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 146/422 (34%), Positives = 217/422 (51%), Gaps = 42/422 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ G++QD ++ K++ RDT + + +MN++ +
Sbjct: 481 RAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNIL---MWWE 537
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR----HGELLSGILDKKQFGS 128
+ + + P I KP P+WTGKQV + +I PK +IR H E +G +
Sbjct: 538 DFDGKVPAPAILKPRPIWTGKQVFNLII----PKPINLIRFSAWHSEAETGFITPG---- 589
Query: 129 TQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAK 188
DT V I GELLSG L KK G++ L+H +W+ G + A L
Sbjct: 590 ----------DTMVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQW 639
Query: 189 LFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISS 248
L +L + GF++G+ D + K + I+KA+ E A L+ +P
Sbjct: 640 LVNYWLLQNGFSIGIGDTIADAATMVKINETISKAKDDVKELIKQAHDKQLEAEP----- 694
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGS 308
+ F ++++ D ++ Q L E +NNL+ MV +G+KGS
Sbjct: 695 ----GRTMMESFENRVNQVLNKARDDAGSSA-QKSLSE-------SNNLKAMVTAGSKGS 742
Query: 309 TVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFF 368
+N Q++ +GQ +EGKR RTLP F + P + GFV+ ++ G+ PQEFF
Sbjct: 743 FINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFF 802
Query: 369 FHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
FH M GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +IQ LYGEDG+D
Sbjct: 803 FHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 862
Query: 429 VT 430
Sbjct: 863 AV 864
Score = 143 bits (360), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 126/457 (27%), Positives = 218/457 (47%), Gaps = 68/457 (14%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
L SL PGE +G +AAQSIGEP+TQMTLNTFH+AG NVTLG+PRLREI+ +A K IK
Sbjct: 1043 LQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA-KKIK 1101
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISP-----EPHMNYQ 682
TPS+ + P++ K ++ A + ++ T+ V +I W + P E + +
Sbjct: 1102 TPSLSVYLKPEVNKKKELAKNVQCALEYTTLRSVTHATEI--WYDPDPLGTIIEEDVEFV 1159
Query: 683 MKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMED 742
+ +P D + P + R+ + + ++++A A E+ + +D
Sbjct: 1160 RSYYEMPDEDI-DPDKISPWLLRIELNREMMVDKKLSMADIA---------EKINHEFDD 1209
Query: 743 DVE----DDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEER 798
D+ DD A + RV +++DE A + + ED+ F +
Sbjct: 1210 DLSCIFNDD------NADKLILRVRITNDE------APKGEIQDESAEDDVFLK------ 1251
Query: 799 MSEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSN 858
KIE T + ++ + + + + KY K+ N
Sbjct: 1252 -----------------KIESNMLTEMALRGIPDINKVFIKYG---------KVNKFEDN 1285
Query: 859 LFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKN 918
+ + +++ +L T+G+N+ + + +D + N + + GIEA R ++ E++
Sbjct: 1286 VGFKADNEWMLVTEGVNLLAVMCHED-VDATRTTSNHLIEVIEVLGIEAVRRALLDELRV 1344
Query: 919 VFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSF-IQKMTFEMPLEKIRQASM 977
V + G V+ RHL+++ D MT+ G +A+ R+GI N + + + +FE ++ + A++
Sbjct: 1345 VISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAV 1404
Query: 978 QGREDSLRAPSARVMLGQECRQGTGLFQLRNREKKKK 1014
D LR S +MLGQ GTG F L E++ K
Sbjct: 1405 YAESDYLRGVSENIMLGQLAPIGTGGFDLSCFERRVK 1441
>gi|212533501|ref|XP_002146907.1| DNA-dependent RNA polymerase II largest subunit, putative
[Talaromyces marneffei ATCC 18224]
gi|210072271|gb|EEA26360.1| DNA-dependent RNA polymerase II largest subunit, putative
[Talaromyces marneffei ATCC 18224]
Length = 1744
Score = 228 bits (582), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 149/419 (35%), Positives = 216/419 (51%), Gaps = 40/419 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + + P+ PL G++QD + K+ RD FLT+ + MNL+ L +
Sbjct: 514 RAELLQLALVPNNIVSPQRNGPLMGIVQDSLCGIYKICRRDVFLTKDQVMNLM---LWVP 570
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVI---INLTPKDKVIIRHGELLSGILDKKQFGST 129
+ + P I KP P WTGKQ++S V+ +NL DK E S + D
Sbjct: 571 DWDGVIPQPAIIKPRPRWTGKQIISMVLPSGLNLLRVDKDKAPLSEKFSPLTDGGI---- 626
Query: 130 QYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKL 189
LVH G+L+ G+ KK G++ G+VH +++ +G E A+S + ++
Sbjct: 627 ---LVHG----------GQLMYGMFSKKTVGASGGGVVHTIFNEYGPEAAVSFFNGAQRV 673
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
+L GF++G+ D + D+K + I A R G EI+ S
Sbjct: 674 VNYWLLHNGFSIGIGDTIP----DKKTIERIEDAVRAGKAEV-----------EEIVQSA 718
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
+ ++P I ++S + + NN + E NN M SG+KGS
Sbjct: 719 TENTLEALPGM--NIRETFESKVSRALNNAREAAGSETEKSLKDLNNAIQMARSGSKGSA 776
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q++ ++GQ +EGKR RTLP F + SP + GFV+ ++ G+ P EFFF
Sbjct: 777 INISQMTAIVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFF 836
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
H MAGREGLIDTAVKT+ +GY+QR LVK LE L V YD TVR+S +IQ LYGEDGLD
Sbjct: 837 HAMAGREGLIDTAVKTAETGYIQRKLVKALEELMVKYDGTVRNSLGDIIQFLYGEDGLD 895
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 65/91 (71%), Gaps = 4/91 (4%)
Query: 543 VVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAG 602
V +Y+ + HV +M F + + ANPGE VGVLAAQSIGEP+TQMTLNTFHFAG
Sbjct: 1053 VTQYSMNKLAFKHVLGAIEMRFAQ---AQANPGEMVGVLAAQSIGEPATQMTLNTFHFAG 1109
Query: 603 RGDMNVTLGIPRLREILMMATKAIKTPSMEI 633
NVTLG+PRL+E+L +AT IKTPSM +
Sbjct: 1110 VSSKNVTLGVPRLKELLNVATN-IKTPSMTV 1139
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 64/122 (52%), Gaps = 1/122 (0%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D + Y N + +GIEAA ++RE+ V A G V+ RHL+L+ D MT G
Sbjct: 1349 VDTTRTYSNQFIEVFEVFGIEAARSALLRELTQVLAFDGSYVNHRHLALLVDIMTVRGYL 1408
Query: 946 VAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
+ R+GI R + + + +FE +E + +A+ G D R S ++LGQ GTG F
Sbjct: 1409 TPVTRHGINRADNGALMRCSFEETVEILLEAAAFGELDDCRGVSENLILGQLAPAGTGEF 1468
Query: 1005 QL 1006
+
Sbjct: 1469 DV 1470
>gi|195996443|ref|XP_002108090.1| hypothetical protein TRIADDRAFT_49721 [Trichoplax adhaerens]
gi|190588866|gb|EDV28888.1| hypothetical protein TRIADDRAFT_49721 [Trichoplax adhaerens]
Length = 1784
Score = 228 bits (582), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 144/416 (34%), Positives = 219/416 (52%), Gaps = 30/416 (7%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE + + V Q + P+ P+ G++QD + + K ++RD FL + MNL+ + +
Sbjct: 500 RAEITEICMVPRQIVTPQSNKPVMGIVQDSLTAVRKFTMRDVFLEKEVVMNLL---MWLP 556
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N + P I +P LWTGKQ+ S +I P + +IR DK + G
Sbjct: 557 NWNGKMPQPAILRPKELWTGKQIFSLII----PGNVNLIRTHSTHPDDEDKGPYKFISPG 612
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
DT V I HGE++SGIL K+ G++ LVH +++ G E A + +
Sbjct: 613 ------DTKVLIEHGEVISGILCKRTLGTSSGSLVHVIFNELGHEVARQFYGNIQTVVNN 666
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L G ++G+ D + + + I KA++ E A L+ P + L++
Sbjct: 667 WLLIEGHSIGIGDSIADEATYQDIQSTILKAKQDVVEVIEKAHNDELEPTP---GNTLRK 723
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
F Q++R DK T + Q L NN + MV +G+KGS +N
Sbjct: 724 T------FENQVNRILNDARDK-TGSSAQKSLSN-------FNNFKAMVVAGSKGSKINI 769
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+ ++GQ +EGKR RTLP F+ + P + GFV+ ++ G+ P EFFFH M
Sbjct: 770 SQVIAVVGQQNVEGKRIPFGFRHRTLPHFIQDDYGPESRGFVENSYLAGLTPTEFFFHAM 829
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
GREGLIDTAVKT+ +GY+QR L+K +EG+ VHYD TVR++++ LIQ+ YGEDGLD
Sbjct: 830 GGREGLIDTAVKTAETGYIQRRLIKAMEGVMVHYDGTVRNANMQLIQLCYGEDGLD 885
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 61/98 (62%), Gaps = 5/98 (5%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
L+ PGE VG LAAQS+GEP+TQMTLNTFH+AG NVTLG+PRL+EI+ ++ K K
Sbjct: 1056 LIGEVQPGEMVGPLAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKP-K 1114
Query: 628 TPSMEI----PFLPDMPKLEKKANRLAKSMTRITMADV 661
TPS+ + P D K + RL + R A+
Sbjct: 1115 TPSLTVILTGPAARDAEKAKDVLCRLEHTTLRKVTANT 1152
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 77/140 (55%), Gaps = 2/140 (1%)
Query: 868 LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 927
+L+TDG+N+ + + + D K NDI + S GIEA + + +E+ +V + G V
Sbjct: 1314 ILETDGVNLQKVLSVKDV-DAVKSTSNDIVEIFSVLGIEAVRKAVEKEMNHVISFDGSYV 1372
Query: 928 DPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRA 986
+ RHL+L+ D MT G +A+ R+GI R + + +FE ++ + A+ D LR
Sbjct: 1373 NYRHLALLCDVMTCRGHLMAITRHGINRQEVGALMRCSFEETVDILMDAAFHSETDYLRG 1432
Query: 987 PSARVMLGQECRQGTGLFQL 1006
S +MLGQ + GTG F L
Sbjct: 1433 VSENIMLGQLSKIGTGCFDL 1452
>gi|83320434|gb|ABC02844.1| RNA polymerase II largest subunit, partial [Basidiobolus ranarum]
Length = 1015
Score = 228 bits (582), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 152/445 (34%), Positives = 230/445 (51%), Gaps = 40/445 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAE + V Q + P+ P+ G++QD + K + RD F+ +A MN++ + +
Sbjct: 433 KAEIKEICMVPKQIISPQSNKPVMGIVQDTLCGIRKFTKRDCFVDKALVMNIL---MWVA 489
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + P I KP PLWTGKQ+++ ++ PK+ I + D+K S
Sbjct: 490 DWDGVIPTPAILKPQPLWTGKQLVTMIV----PKNINCITYHSAHPD--DEKSDISPG-- 541
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
DT V + +GELLSGI+ KK G++ G VH + HG E A S +
Sbjct: 542 ------DTKVVVENGELLSGIVCKKTVGASNGGWVHVAMNEHGPEVAKKFFSGAQAVVNY 595
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L + GF++G+ D + + T+ IN A++ +E +A L+ P + +
Sbjct: 596 WLLQHGFSIGIGDTIADGQTTEHITETINSAKQRVSEIILSAQQDTLECAPGMTIRET-- 653
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
F +++R+ D + + E NN++ MV SG+KGS +N
Sbjct: 654 -------FENKVNRELNRARDHSGRSAEKSLKEE--------NNVKQMVVSGSKGSFINI 698
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EGKR RTLP F + P + GFV+ ++ G+ PQEF+FH M
Sbjct: 699 SQMSACVGQQNVEGKRIPFGFKFRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFYFHAM 758
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD--VT 430
GREGLIDTAVKT+ +GY+QR LVK LE + V YD TVR+S ++IQ YGEDG+D
Sbjct: 759 GGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGNIIQFCYGEDGMDGCFV 818
Query: 431 KRQYLTDKQFSFLEDNIKWICSYKV 455
++Q L + S N K+ SYKV
Sbjct: 819 EKQTLDSIRMS----NEKFEKSYKV 839
>gi|238880428|gb|EEQ44066.1| DNA-directed RNA polymerase II largest subunit [Candida albicans
WO-1]
Length = 1742
Score = 228 bits (582), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 148/419 (35%), Positives = 221/419 (52%), Gaps = 39/419 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
++E S + V Q + P+ P+ G++QD + K++LRD F+ + MN+ Y I
Sbjct: 498 RSELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIEYDQVMNMCY---WIP 554
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N + PP + KP LWTGKQ+LS I PK H + G D
Sbjct: 555 NWDGVIPPPAVVKPKQLWTGKQLLSLAI----PKGI----HLQRFDGGRD---------- 596
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ + DT + I GE++ G++DKK G+T GL+H V G + L S + K+
Sbjct: 597 -LLSPKDTGMLIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPKVCAELFSSIQKVVNY 655
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + + R K I +A++ E +A L+ +P + L+E
Sbjct: 656 WLLHNGFSIGIGDTIADAQTMRDVNKTIQEAKQKVQEIIIDAQHNKLEPEPGMT---LRE 712
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
+ F + R D + ++ L + NN++ MV SG+KGS +N
Sbjct: 713 S------FEHNVSRVLNQARDTAGRSA-EMSLKD-------LNNVKQMVTSGSKGSFINI 758
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EGKR R+LP F + SP + GFV+ ++ G+ PQEFFFH M
Sbjct: 759 SQMSACVGQQIVEGKRIPFGFGDRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAM 818
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTK 431
AGREGLIDTAVKT+ +GY+ R LVK LE + VHYD T R+S +IQ +YGEDG+D T+
Sbjct: 819 AGREGLIDTAVKTAETGYIPRRLVKALEDIMVHYDGTTRNSLGDIIQFIYGEDGIDGTQ 877
Score = 134 bits (337), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 138/446 (30%), Positives = 209/446 (46%), Gaps = 66/446 (14%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
S+ +PGE VGV+AAQSIGEP+TQMTLNTFH+AG NVTLG+PRL+EIL +A K IKTP
Sbjct: 1057 SIVHPGEMVGVVAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVA-KNIKTP 1115
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNY-QMKFCFI 688
+M + P++ +KA + ++ T L+ V + P+P + + +
Sbjct: 1116 AMTVFLDPEVASDIEKAKIVQSAIEHTT----LKNVTSSTEIYYDPDPRTTVIEDDYDTV 1171
Query: 689 PAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDE 748
A+ V+ S ID + +L LE+ AK + L + Q+ + + +
Sbjct: 1172 EAYFAIPDQKVEES--IDK-QSPWLLRLELDRAKMLDKQL-------TMAQVAEKISQNF 1221
Query: 749 GE------GAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSER 802
GE + A + R V D + +EDA + EED ++ +R
Sbjct: 1222 GEDLFVIWSDDTADKLIIRCRVVRDPKSLDEDA-------DAEED----------QILKR 1264
Query: 803 EEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNLFEE 862
E +I R T VF+ QH + H P E
Sbjct: 1265 IEAHMLESISLR---GIPGITRVFMM----QHKVSH-----------------PDETGEF 1300
Query: 863 KESKH-LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 921
K+ K +L+TDG+N+ + + D + Y ND + S GIEA + +E+ NV A
Sbjct: 1301 KQGKEWVLETDGVNLADVMAVPGV-DSTRTYSNDFIEVLSVLGIEATRSSLYKEILNVIA 1359
Query: 922 VYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGR 980
G V+ RH++L+ D MT G +A+ R+GI R + + + +FE +E + A+
Sbjct: 1360 FDGSYVNYRHMALLVDVMTSRGHLMAITRHGINRSDTGALMRCSFEETVEILLDAAAAAE 1419
Query: 981 EDSLRAPSARVMLGQECRQGTGLFQL 1006
D + S VMLGQ GTG F L
Sbjct: 1420 LDDCKGISENVMLGQMAPLGTGSFDL 1445
>gi|397135846|gb|AFO11418.1| RNA polymerase I, partial [Kluyveromyces marxianus]
Length = 871
Score = 228 bits (582), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 148/422 (35%), Positives = 217/422 (51%), Gaps = 47/422 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S L V Q + P+ P G++QD + K++LRDTF+ + +N++Y I
Sbjct: 311 RAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKMTLRDTFIEIDQVLNMLY---WIP 367
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ P I KP PLW+GKQ+LS I N G L D F S +
Sbjct: 368 DWXGIIPTPAILKPKPLWSGKQILSMAIPN-----------GIHLQRFDDGTTFLSPK-- 414
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
D + I G+++ G++DKK GS+ GL+H V G E L S + K+
Sbjct: 415 ------DNGMLIIDGQIIFGVVDKKTVGSSSGGLIHVVTREKGPEICARLFSNIQKVVNY 468
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARR----LGTEAACNALGLPLDTDPEIISS 248
+ GF++G+ D + ++ R+ T+ I A++ + EA N L
Sbjct: 469 WFLHNGFSIGIGDTIADEKTMREITEAIAIAKKKVEDVTKEAQANLL------------- 515
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGS 308
+ F + R DK + +V L + NN++ MV +G+KGS
Sbjct: 516 TAKHGMTLRESFEDNVVRYLNEARDKAGRSA-EVNLKD-------LNNVKQMVSAGSKGS 567
Query: 309 TVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFF 368
+N Q+S +GQ +EGKR A + RTLP F + SP + GFV+ ++ G+ PQEFF
Sbjct: 568 FINIAQMSACVGQQSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFF 627
Query: 369 FHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
FH M GREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S ++IQ +YGEDG+D
Sbjct: 628 FHAMGGREGLIDTAVKTAXTGYIQRRLVKALEDIMVHYDGTTRNSLGNVIQFIYGEDGMD 687
Query: 429 VT 430
+
Sbjct: 688 AS 689
>gi|413917378|gb|AFW57310.1| RNA polymerase II large subunit family protein [Zea mays]
Length = 1850
Score = 228 bits (582), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 147/420 (35%), Positives = 219/420 (52%), Gaps = 40/420 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ G++QD ++ K++ RDT + + +MN++ +
Sbjct: 510 RAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNIL---MWWQ 566
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + + PTI KP P+WTGKQV + +I PK +IR S +++ G G
Sbjct: 567 DFDGKIPAPTILKPRPIWTGKQVFNLII----PKQINLIR----FSAWHSEEEKGFITPG 618
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
DT V I GELLSG L KK G+ L+H +W+ G + A L L
Sbjct: 619 ------DTMVRIEKGELLSGTLCKKSLGTGSGSLIHVIWEEVGPDAARKFLGHTQWLVNY 672
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L + GF++G+ D + I+KA+ E A L+ +P + E
Sbjct: 673 WLLQNGFSIGIGDTIADASTMETINDTISKAKNAVKELIKKAHEKQLEAEP---GRTMME 729
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNIN---QVCLPEGLIEPFPANNLQFMVESGAKGST 309
++ + + +L+K ++ Q L E +NNL+ MV +G+KGS
Sbjct: 730 SF----------ENRVNQVLNKARDDAGSSAQNSLSE-------SNNLKAMVTAGSKGSF 772
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q++ +GQ +EGKR RTLP F + P + GFV+ ++ G+ PQEFFF
Sbjct: 773 INISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 832
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H M GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +IQ LYGEDG+D
Sbjct: 833 HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDA 892
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/108 (47%), Positives = 70/108 (64%), Gaps = 3/108 (2%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
L SL PGE +G +AAQSIGEP+TQMTLNTFH+AG NVTLG+PRLREI+ +A K IK
Sbjct: 1072 LQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA-KKIK 1130
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISP 675
TPS+ + P + + ++ A + ++ T+ V +I W + P
Sbjct: 1131 TPSLSVYLKPQVNQKKELAKNVQCALEYTTLRSVTHATEI--WYDPDP 1176
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 74/136 (54%), Gaps = 2/136 (1%)
Query: 868 LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 927
+L T+G+N+ + + + D + N + + GIEA R ++ E++ V + G V
Sbjct: 1324 MLDTEGVNLLAVMCHEDV-DATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYV 1382
Query: 928 DPRHLSLVADYMTHSGTYVAMNRNGIRLNPSF-IQKMTFEMPLEKIRQASMQGREDSLRA 986
+ RHL+++ D MT+ G +A+ R+GI N + + + +FE ++ + A++ D LR
Sbjct: 1383 NYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDHLRG 1442
Query: 987 PSARVMLGQECRQGTG 1002
+ +MLGQ GTG
Sbjct: 1443 VTENIMLGQLAPIGTG 1458
>gi|302410002|ref|XP_003002835.1| DNA-directed RNA polymerase II subunit RPB1 [Verticillium
albo-atrum VaMs.102]
gi|261358868|gb|EEY21296.1| DNA-directed RNA polymerase II subunit RPB1 [Verticillium
albo-atrum VaMs.102]
Length = 1756
Score = 228 bits (582), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 157/452 (34%), Positives = 232/452 (51%), Gaps = 59/452 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + P+ PL G++QD + KL RD FLT+ E MN++ L +
Sbjct: 511 RAEIKELCMVPINIVSPQRNGPLMGIVQDTLAGAYKLCRRDVFLTKEEVMNIM---LWVP 567
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N + P I +P P WTGKQ++S I + L+ + D K+ S
Sbjct: 568 NWDGIIPVPAILRPSPRWTGKQIMSMAIPEIVS-----------LNSLPDTKEDNS---- 612
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
V D + I+ G+L+ G+L KK G+ G+VH V++ HG E A+ L+ + +
Sbjct: 613 ----VKDEGLLIQSGQLMYGLLTKKVIGAASGGIVHIVYNEHGPEAAMKFLNGVQQTVNY 668
Query: 193 YLQRVGFTLGVRDIL--------VRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPE 244
+L GF++G+ D + V+ D ++ ++ RL +A N L + P
Sbjct: 669 WLLHNGFSIGIGDTIPDTLTIEKVQGHIDEQKDEVA----RLTKQATNNEL----EPSPG 720
Query: 245 IISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESG 304
+ ++E F +++ R + DK Q L + NN M SG
Sbjct: 721 M---NIRET------FESKVSRALNTARDKA-GTTTQKSLKD-------LNNAVTMALSG 763
Query: 305 AKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQP 364
+KGS++N Q++ L+GQ +EGKR RTLP F + SP A GFV+ ++ G+ P
Sbjct: 764 SKGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTP 823
Query: 365 QEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGE 424
EFFFH MAGREGLIDTAVKT+ +GY+QR LVK LE ++ YD TVR+S +IQ LYGE
Sbjct: 824 SEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVSAKYDGTVRNSLGDIIQFLYGE 883
Query: 425 DGLDVTKRQYLTDKQFSFLE-DNIKWICSYKV 455
DGLD Y+ ++ FL N K+ YK+
Sbjct: 884 DGLDAI---YIEKQRMDFLNMSNKKFDDRYKL 912
Score = 93.6 bits (231), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/95 (53%), Positives = 66/95 (69%), Gaps = 2/95 (2%)
Query: 573 NPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSME 632
+PGE VGVLAAQSIGEP+TQMTLNTFHFAG NVTLG+PRL+EIL +A + IKTPSM
Sbjct: 1074 SPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLA-QNIKTPSMV 1132
Query: 633 IPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKI 667
+ +L + ++ A L ++ T+ V +I
Sbjct: 1133 V-YLSEGNATQEAAKALRSTVEHTTLRSVTAMTEI 1166
Score = 79.7 bits (195), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 68/122 (55%), Gaps = 1/122 (0%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D + Y N + + +GIEAA ++RE+ V A G V+ RHL+L+ D MT+ G
Sbjct: 1342 VDATRTYTNHLWQINEVFGIEAARGALVRELTQVLAFDGSYVNHRHLALLVDVMTYRGGI 1401
Query: 946 VAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
A+ R+GI R + + + +FE +E + +A+ G D R S VMLGQ GTG F
Sbjct: 1402 SAVTRHGINRADTGALMRCSFEETVEILLEAAAVGELDDCRGISENVMLGQMAPMGTGHF 1461
Query: 1005 QL 1006
++
Sbjct: 1462 EV 1463
>gi|242071129|ref|XP_002450841.1| hypothetical protein SORBIDRAFT_05g019520 [Sorghum bicolor]
gi|241936684|gb|EES09829.1| hypothetical protein SORBIDRAFT_05g019520 [Sorghum bicolor]
Length = 1874
Score = 228 bits (582), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 144/417 (34%), Positives = 218/417 (52%), Gaps = 34/417 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ G++QD ++ K++ RDT + + +MN++ +
Sbjct: 511 RAEVLELMMVPKCIVSPQSNKPVMGIVQDTLLGCRKITKRDTLIEKDVFMNIL---MWWE 567
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + + P I KP P+WTGKQV + +I P+ +IR S ++K F +
Sbjct: 568 DFDGKIPAPAILKPRPIWTGKQVFNLII----PRQINLIRFCSWHSD--EEKGFVTPS-- 619
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
DT V I GELLSG L KK G+ L+H +W+ G + A L L
Sbjct: 620 ------DTVVRIEKGELLSGTLCKKTLGTGSGSLIHIIWEEVGPDAARKFLGYTQWLVNY 673
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L + GF++G+ D++ K I+ A+ + A L +P
Sbjct: 674 WLLQNGFSIGIGDMIADAATMADINKAISGAKDCVKKLIKQARDEQLKAEP--------- 724
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
+ + F +++ D V +N+ Q L E +NNL+ MV +G+KGS +N
Sbjct: 725 GHTMMESFENKVNEALNKARDNVGSNV-QNNLSE-------SNNLKAMVSAGSKGSFINI 776
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q++ +GQ +EGKR S RTLP F + P + GFV+ ++ G+ PQEFFFH M
Sbjct: 777 SQMAACVGQQNIEGKRIPFGFSDRTLPHFTKDDYGPESRGFVENSYLQGLTPQEFFFHAM 836
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S ++Q +YGEDG+D
Sbjct: 837 GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVVQFIYGEDGMDA 893
Score = 138 bits (348), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 127/452 (28%), Positives = 215/452 (47%), Gaps = 68/452 (15%)
Query: 561 DMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILM 620
D I ++ SL P E +G +AAQSIGEP+TQMTLNTFHFAG NVTLG+PRLREI+
Sbjct: 1066 DEIVWRFSQSLVAPSEMIGCVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLREIIN 1125
Query: 621 MATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISP----- 675
+A K IKTPS+ + P++ K ++ A + ++ T+ V ++ W + P
Sbjct: 1126 VA-KKIKTPSLSVYLKPEVNKTKELAKSVQCALEYTTLRSVTHATEV--WYDPDPMGTII 1182
Query: 676 EPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQ 735
E + + + + +P D + P + R+ + + ++++A A + +N E
Sbjct: 1183 EEDLEFVLSYYEMPDEDI-DPDKISPWLLRIELNREMMVDKKLSMADIANE----INREF 1237
Query: 736 SRDQMEDDVEDDEGEGAEGAGAALGRVDVSSDE-ERDE--EDAVQSHKKVNQEEDNDFEE 792
D + DD A + R+ + +DE R E +D+ + + E N E
Sbjct: 1238 DGD-LSCIFSDD------NADKLILRLRIINDEASRGEILDDSAGDEVFLKKIESNMLAE 1290
Query: 793 PEDEERMSEREEDDNTSNIGERFKIEFRDSTNVFVKDV-VNQHNIVHKYSYDKKNHMWCK 851
MS R D VF+K+V VN+ ++ + K++ W
Sbjct: 1291 ------MSLR---------------GIPDINKVFIKEVKVNKFDVSDGF---KEHKEW-- 1324
Query: 852 LLFLPSNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRV 911
+L TDG+N+ + + +D + N + + GIEA R
Sbjct: 1325 ----------------MLDTDGVNLLAVMCHED-VDATRTTSNHLTEVIEVLGIEAVRRA 1367
Query: 912 IIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSF-IQKMTFEMPLE 970
++ E+++V + G V+ RHL+++ D MT+ G +A+ R+GI N + + + +FE ++
Sbjct: 1368 LLDELRSVISFDGSYVNYRHLAVLCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVD 1427
Query: 971 KIRQASMQGREDSLRAPSARVMLGQECRQGTG 1002
+ A++ D LR + +MLGQ GTG
Sbjct: 1428 ILLDAAVHAESDYLRGVTENIMLGQLAPIGTG 1459
>gi|188532151|gb|ACD63087.1| RNA polymerase II largest subunit [Nicotiana tabacum]
Length = 1010
Score = 228 bits (582), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 149/452 (32%), Positives = 231/452 (51%), Gaps = 45/452 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ G++QD ++ K++ RDTF+ + +MN++ +
Sbjct: 430 RAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL---MWWE 486
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + + P I KP PLWTGKQV + +I PK ++R+ S + + G G
Sbjct: 487 DFDGKVPAPAILKPRPLWTGKQVFNLII----PKQINLLRY----SAWHNDSEKGPITPG 538
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
DT V I GELL+G L KK G++ L+H +W+ G + A L L
Sbjct: 539 ------DTQVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNY 592
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L + F++G+ D + K + I+ A+ E A L+ +P + E
Sbjct: 593 WLLQNAFSIGIGDTIADASTMEKINETISNAKSKVKELIKAAQEKQLEAEP---GRTMME 649
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
++ + + +L+K ++ + L E +NNL+ MV +G+KGS +N
Sbjct: 650 SF----------ENRVNQVLNKARDDAGSSA-EKSLSE---SNNLKAMVTAGSKGSFINI 695
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q++ +GQ +EGKR RTLP F + P + GFV+ ++ G+ PQEFFFH M
Sbjct: 696 SQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 755
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVT-- 430
GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +IQ LYGEDG+D
Sbjct: 756 GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWI 815
Query: 431 ---------KRQYLTDKQFSFLEDNIKWICSY 453
++ D +++ D+ W SY
Sbjct: 816 ETQKLDSLKAKKSTFDDLYAYEIDDPNWNPSY 847
>gi|449524332|ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Cucumis sativus]
Length = 1853
Score = 228 bits (581), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 148/430 (34%), Positives = 216/430 (50%), Gaps = 60/430 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ G++QD ++ K++ RDTF+T+ +MN + +
Sbjct: 511 RAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMNTL---MWWE 567
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVI---INLTPKDKVIIRHGELLSGILDKKQFGST 129
+ + + P I KP PLWTGKQV + +I INLT + H E +G +
Sbjct: 568 DFDGKIPAPAILKPQPLWTGKQVFNLIIPKQINLT---RTSAWHSESETGHITPG----- 619
Query: 130 QYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKL 189
DT V I GELLSG L KK G++ L+H +W+ G + A L L
Sbjct: 620 ---------DTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWL 670
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
+L + F++G+ D + K + I+ A+ A L+ +P
Sbjct: 671 VNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPG----- 725
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQV----------CLPEGLIEPFPANNLQF 299
++++D N +NQV + L E +NNL+
Sbjct: 726 -------------------RTMMDSFENKVNQVLNKARDDAGSSAQKSLSE---SNNLKA 763
Query: 300 MVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFM 359
MV +G+KGS +N Q++ +GQ +EGKR RTLP F + P + GFV+ ++
Sbjct: 764 MVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYL 823
Query: 360 TGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQ 419
G+ PQEFFFH M GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +IQ
Sbjct: 824 RGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQ 883
Query: 420 VLYGEDGLDV 429
LYGEDG+D
Sbjct: 884 FLYGEDGMDA 893
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 131/460 (28%), Positives = 217/460 (47%), Gaps = 67/460 (14%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
L SL PGE +G +AAQSIGEP+TQMTLNTFH+AG NVTLG+PRLREI+ +A K IK
Sbjct: 1073 LQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA-KRIK 1131
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCF 687
TPS+ + P+ K +++A + ++ T+ V + ++ W + P + + F
Sbjct: 1132 TPSLSVYLKPEANKTKERAKTVQCALEYTTLRSVTQATEV--WYDPDPMSTI-IEEDIDF 1188
Query: 688 IPAHMYRDKTSVKPSKIIDHFERKFL-KELEVAIAKRAAQGLKNMNIEQSRDQMEDDV-- 744
+ ++ + P KI R L +E+ V A + +N+E +DD+
Sbjct: 1189 VKSYYEMPDEEIAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLE-----FDDDLTC 1243
Query: 745 --EDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSER 802
DD E + R+ + +DE E +S ED+ F + + ++E
Sbjct: 1244 IFNDDNAE------KLILRIRIMNDEAPKGELTDES------AEDDVFLKKIESNMLTE- 1290
Query: 803 EEDDNTSNIGERFKIEFR---DSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNL 859
+ R D VF+K V+K+ ++ F P
Sbjct: 1291 --------------MALRGIPDINKVFIK-----CGKVNKFDENEG--------FKP--- 1320
Query: 860 FEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNV 919
E + +L T+G+N+ + + +D + N + + GIEA R ++ E++ V
Sbjct: 1321 ----EMEWMLDTEGVNLLAVMTHED-VDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVV 1375
Query: 920 FAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSF-IQKMTFEMPLEKIRQASMQ 978
+ G V+ RHL+++ D MT+ G +A+ R+GI N + + + +FE ++ + A++
Sbjct: 1376 ISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVY 1435
Query: 979 GREDSLRAPSARVMLGQECRQGTGLFQLR-NREKKKKKVE 1017
D LR + +MLGQ GTG L N E K +E
Sbjct: 1436 AETDHLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIE 1475
>gi|407461850|ref|YP_006773167.1| bifunctional DNA-directed RNA polymerase subunit A'/A'' [Candidatus
Nitrosopumilus koreensis AR1]
gi|407045472|gb|AFS80225.1| bifunctional DNA-directed RNA polymerase subunit A'/A'' [Candidatus
Nitrosopumilus koreensis AR1]
Length = 1263
Score = 228 bits (581), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 200/659 (30%), Positives = 308/659 (46%), Gaps = 119/659 (18%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V Q + P+ G P+ G ++D V L+ DT L+ E+ NL A+
Sbjct: 476 RAEAILLMRVQDQLISPRYGGPIIGALRDFVTGAYLLTKDDTTLSIQEFSNL---AMLGG 532
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
T+ P T K P +TGKQ+ S + PKD + + G K +
Sbjct: 533 YTDPLPKPATKTKDGPAYTGKQLFSLFL----PKDFNYVITSKWSKGTKGKPK------- 581
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQ-YGLVHAVWDTHGAEHAISLLSCLAKLFT 191
V I++GEL+SG++DK G+ + ++H + +G + L+ + +
Sbjct: 582 --------DVVIKNGELISGVIDKSSIGAEEPESVLHRIAKDYGNAVGKTFLNSILIMVK 633
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARR-------LGTEAACNALGLPLDTDPE 244
++ GF+ G D++V D+ + +I++ + L + L L PE
Sbjct: 634 QFITHYGFSYGYGDLIVP---DKDKQQILDDIQETYDIVDDLTDQFNKGTLKLTRGMRPE 690
Query: 245 IISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESG 304
+ EAY I + DK + N CLP N + M +G
Sbjct: 691 ----EALEAY---------IVNELGKARDKAGSTAND-CLPAD-------NAGKIMATTG 729
Query: 305 AKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQP 364
A+GS++N Q++ LGQ G R + R L + ++ +P A GFV + G+
Sbjct: 730 ARGSSLNVGQMAGALGQQSRRGNRLHDGYNNRALTHYQEHDNNPDAHGFVKSNYREGLSA 789
Query: 365 QEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGE 424
EFFFH M GREGL+DTAV+T +SGY+QR L+ LE + + YD TVRD ++Q LYGE
Sbjct: 790 LEFFFHAMGGREGLVDTAVRTQQSGYMQRRLINALEHIRLEYDGTVRDPHGHIVQFLYGE 849
Query: 425 DGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFI 484
DG+DV K +D +F N + + I++ SGK
Sbjct: 850 DGIDVQK----SDHGEAF---NPSRLVESQTIID-------------------SGK---- 879
Query: 485 FSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGS-ISENLADSV 543
K T + +E KKY K F P ++T DA S +S++ ++V
Sbjct: 880 ------KATKEEIETLA-------KKYTKTF----NPRLTTLVTDALLESGLSKDGIETV 922
Query: 544 VKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGR 603
K KG ++ Y + PG+ VG++ AQSIGEP TQMTL TFHFAG
Sbjct: 923 CK--KG------------LLLYNK--AKVEPGQAVGIITAQSIGEPGTQMTLRTFHFAGI 966
Query: 604 GDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVL 662
+ NVTLG+PRL E L+ A K TP+M+I + K +KA +A+++ + ++ ++
Sbjct: 967 KERNVTLGLPRLIE-LVDARKKPVTPTMDIYLDEESKKSREKAIDVARNVLQTKVSALI 1024
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 80/154 (51%), Gaps = 2/154 (1%)
Query: 862 EKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 921
+K+ + +++T G NV + + + + D + N++ +A T GIEAA +I E+ +
Sbjct: 1111 QKDDEWVIQTTGSNVAKVLEVKGI-DKKNVRTNNVFEIAGTLGIEAARNSLINELNSTLE 1169
Query: 922 VYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIR-LNPSFIQKMTFEMPLEKIRQASMQGR 980
G+EVD R++ LVAD M G + R+GI S + + FE+ + I A++ G
Sbjct: 1170 DQGLEVDNRYIMLVADLMCSRGYMQQIGRHGIAGTKDSVLARAAFEITVPTIAHAALGGE 1229
Query: 981 EDSLRAPSARVMLGQECRQGTGLFQLRNREKKKK 1014
+ L+ + V++G G+G L + KKK
Sbjct: 1230 IEQLKGITENVIVGSNIPIGSGTVDLYMQVSKKK 1263
>gi|413915240|gb|AFW21482.1| RNA polymerase II largest subunit [Balansia obtecta]
Length = 1760
Score = 228 bits (581), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 153/424 (36%), Positives = 218/424 (51%), Gaps = 49/424 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + + P+ PL G++QD + K+ RDTF+ + MN++ L +
Sbjct: 510 RAEVRELCLVPNNIVSPQKNGPLMGIVQDSLAGAYKICRRDTFIDKEMVMNMM---LWVP 566
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N + P I KP P WTGKQ++S VI PK+ I H SG D
Sbjct: 567 NWDGVIPQPAILKPRPRWTGKQLISMVI----PKE--ISLHSPESSGGQDNADI------ 614
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ DT + I+ GELL G+L KK GS G+VH ++ G + A++ L+ + ++ T
Sbjct: 615 ---PLKDTGLLIQSGELLYGLLKKKNIGSAAGGIVHLSYNELGPDGAMAFLNGVQQVVTY 671
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKAR----RLGTEAACNALGLPLDTDPEIISS 248
+L G ++G+ D + ++ K I+ + RL +A N L
Sbjct: 672 WLLNNGHSIGIGDTVPDKQTIEKVQVHIDTQKAEVARLTAQATANEL------------- 718
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKV---TNNINQVCLPEGLIEPFPANNLQFMVESGA 305
EA + RA + + L+ Q L + +NN M ESG+
Sbjct: 719 ---EALPGM-NVRATFENKVSMALNSARDQAGTTTQRSLKD-------SNNAVTMAESGS 767
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS++N Q++ L+GQ +EGKR RTLP F + SP A GFV+ ++ G+ P
Sbjct: 768 KGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPT 827
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EFFFH MAGREGLIDTAVKT+ +GY+QR LVK LE L+ YD TVR+S +IQ LYGED
Sbjct: 828 EFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDIIQFLYGED 887
Query: 426 GLDV 429
GLD
Sbjct: 888 GLDA 891
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/64 (73%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
S +PGE VGVLAAQSIGEP+TQMTLNTFHFAG NVTLG+PRL+EIL +A K IKTP
Sbjct: 1073 SFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLA-KDIKTP 1131
Query: 630 SMEI 633
SM +
Sbjct: 1132 SMAV 1135
Score = 83.6 bits (205), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 70/122 (57%), Gaps = 1/122 (0%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D + Y ND+ + +GIEAA +++E+ NV A G V+ RH++L+ D MT+ G+
Sbjct: 1346 VDPTRTYTNDLWQIVEVFGIEAARSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGSI 1405
Query: 946 VAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
A+ R+GI R + + + +FE +E + +A+ G D R S VMLGQ GTG F
Sbjct: 1406 SAVTRHGINRADTGALMRCSFEETVEILLEAAATGELDDCRGISENVMLGQLAPMGTGNF 1465
Query: 1005 QL 1006
+
Sbjct: 1466 DV 1467
>gi|397135848|gb|AFO11419.1| RNA polymerase I, partial [Eremothecium cymbalariae]
Length = 871
Score = 228 bits (581), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 147/422 (34%), Positives = 223/422 (52%), Gaps = 47/422 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S L V Q + P+ P G++QD + K++LRDTF+ + +N++Y I
Sbjct: 311 RAELSQLCAVPQQIVSPQSNKPCMGIVQDTLCGIRKMTLRDTFIELDQVLNMLY---WIP 367
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGI-LDKKQFGSTQY 131
+ + PTI KP PLW+GKQ+LS I N GI L + G+T
Sbjct: 368 DWDGVIPKPTILKPKPLWSGKQLLSMAIPN----------------GIHLQRFDEGTTYL 411
Query: 132 GLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFT 191
+ D + I G+++ G++DKK GS+ GL+H V G + L + K+
Sbjct: 412 ----SPKDNGMLIIDGQIIFGVVDKKTVGSSSGGLIHVVTREKGPQVCAKLFGNIQKVVN 467
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQ 251
+L GF++G+ D + ++ R+ T+ I A++ E +
Sbjct: 468 YWLLHNGFSIGIGDTIADEKTMREITEAIALAKKRVQEVT-------------------K 508
Query: 252 EAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPF---PANNLQFMVESGAKGS 308
EA A++ + + + +S D V +N+ G NN++ MV +G+KGS
Sbjct: 509 EAQANLLTAKHGMTLR-ESFEDNVVRFLNEARDKAGRSAELNLRDLNNVKQMVSAGSKGS 567
Query: 309 TVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFF 368
+N Q+S +GQ +EGKR A + RTLP F + SP + GFV+ ++ G+ PQEFF
Sbjct: 568 FINIAQMSACVGQQSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFF 627
Query: 369 FHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
FH M GREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S ++IQ +YGEDG+D
Sbjct: 628 FHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGNIIQFVYGEDGMD 687
Query: 429 VT 430
+
Sbjct: 688 AS 689
>gi|358371706|dbj|GAA88313.1| DNA-directed RNA polymerase III largest subunit [Aspergillus kawachii
IFO 4308]
Length = 2146
Score = 228 bits (581), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 190/652 (29%), Positives = 304/652 (46%), Gaps = 96/652 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + PK+G P+ IQD + + LS +D F R + + L +L
Sbjct: 1226 RAEAMELMGVKNNLATPKNGEPIISAIQDFISAAYILSSKDNFFDRRSFTQI---CLYML 1282
Query: 73 NTEIR--TLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDK--KQFGS 128
+ R PP + KP LWTGKQV + +++ D V++ LD ++F +
Sbjct: 1283 GPQTRFDLPPPAVLKPQMLWTGKQVFN-ILMRPNKDDPVLVN--------LDAACREFKA 1333
Query: 129 TQYGLVHAV--WDTHVTIRHGELLSGILDKKQFGSTQY-GLVHAVWDTHGAEHAISLLSC 185
+ G + D + IR+ E++ G++DK GS + + + + +G A ++
Sbjct: 1334 PKDGTPRDLDPKDAWLVIRNSEVMCGVMDKSTIGSGKKDNVFYIMLRDYGPVAAAEGMNR 1393
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEI 245
L++L + +GF++G+ D+ ++ R + ++ A A C+ E+
Sbjct: 1394 LSRLSARWFTNMGFSIGITDVYPSEKLLRSKHNLVETAY-----AQCD----------EV 1438
Query: 246 IS---SQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
I+ + E Y + + ++ Q +L KV C+ + + + N+ M
Sbjct: 1439 IAKYKAGTLEKYPGCDELQT-MENQLSGILSKVRQQAGDECIAQ--LSKY--NSPLIMAT 1493
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
SG+KGS++N Q+ L+GQ + G+R RTLP F P + GFV F +G+
Sbjct: 1494 SGSKGSSINVSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNARQPPSKGFVRNSFFSGL 1553
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
+P EF FH M+GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR+S +++Q Y
Sbjct: 1554 EPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSTRYDDTVRNSSAAIVQFQY 1613
Query: 423 GE---DGLDVTKRQ----------------YLTDKQFSFLEDNIKWICSYKVILNLLKKH 463
G+ D LD+ + Y D++ S L I IC +L K
Sbjct: 1614 GDDKLDPLDMEGKAKPVHFDRTFIHAESTTYKNDER-SLLPAEIMEICE-----EMLSKE 1667
Query: 464 PLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQ-LDDKARKKYRKKFKACPQPL 522
L L+ + + + D LE Q + KA K + P
Sbjct: 1668 RSKLVRKDLMGNELGYMDRSDHGVDQFESARDFLESIQQYVATKADKLISRGGDIDPNDE 1727
Query: 523 ISTFQPDAHFGSISEN-----LADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGEN 577
S + H G ++E ++ ++KY K + +A H
Sbjct: 1728 RSQKGLN-HTGKLTERTLRTFISSCLMKYKKAQVEAGHA--------------------- 1765
Query: 578 VGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
VG + AQSIGEP TQMTL TFHFAG M++T G+PR++EI+ A+K I TP
Sbjct: 1766 VGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEII-NASKEISTP 1816
Score = 66.2 bits (160), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 62/114 (54%), Gaps = 3/114 (2%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N++ M GIEAA I++E+ V +++DPRH+ L+AD MT+ G + + R G+
Sbjct: 1994 NNVMEMRDVLGIEAARTTIVQEISEVMK--DMDIDPRHMQLLADVMTYKGEVLGITRFGL 2051
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
++ S +Q +FE + + A GR D + S +++G+ GTG ++
Sbjct: 2052 AKMRDSVLQLASFEKTADHLFDAGGAGRSDLIEGVSECIIMGKTVSLGTGAMEV 2105
>gi|363755924|ref|XP_003648178.1| hypothetical protein Ecym_8065 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891378|gb|AET41361.1| Hypothetical protein Ecym_8065 [Eremothecium cymbalariae
DBVPG#7215]
Length = 1743
Score = 228 bits (581), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 147/422 (34%), Positives = 223/422 (52%), Gaps = 47/422 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S L V Q + P+ P G++QD + K++LRDTF+ + +N++Y I
Sbjct: 498 RAELSQLCAVPQQIVSPQSNKPCMGIVQDTLCGIRKMTLRDTFIELDQVLNMLY---WIP 554
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGI-LDKKQFGSTQY 131
+ + PTI KP PLW+GKQ+LS I N GI L + G+T
Sbjct: 555 DWDGVIPKPTILKPKPLWSGKQLLSMAIPN----------------GIHLQRFDEGTTYL 598
Query: 132 GLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFT 191
+ D + I G+++ G++DKK GS+ GL+H V G + L + K+
Sbjct: 599 ----SPKDNGMLIIDGQIIFGVVDKKTVGSSSGGLIHVVTREKGPQVCAKLFGNIQKVVN 654
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQ 251
+L GF++G+ D + ++ R+ T+ I A++ E +
Sbjct: 655 YWLLHNGFSIGIGDTIADEKTMREITEAIALAKKRVQEVT-------------------K 695
Query: 252 EAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPF---PANNLQFMVESGAKGS 308
EA A++ + + + +S D V +N+ G NN++ MV +G+KGS
Sbjct: 696 EAQANLLTAKHGMTLR-ESFEDNVVRFLNEARDKAGRSAELNLRDLNNVKQMVSAGSKGS 754
Query: 309 TVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFF 368
+N Q+S +GQ +EGKR A + RTLP F + SP + GFV+ ++ G+ PQEFF
Sbjct: 755 FINIAQMSACVGQQSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFF 814
Query: 369 FHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
FH M GREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S ++IQ +YGEDG+D
Sbjct: 815 FHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGNIIQFVYGEDGMD 874
Query: 429 VT 430
+
Sbjct: 875 AS 876
Score = 137 bits (346), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 129/449 (28%), Positives = 212/449 (47%), Gaps = 68/449 (15%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
L S+ +PGE VGVLAAQSIGEP+TQMTLNTFHFAG VT G+PRL+EIL +A K +K
Sbjct: 1054 LRSIVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVA-KNMK 1112
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNY------ 681
TPS+ + D ++KA + ++ T L+ V + + P+P
Sbjct: 1113 TPSLTVYLNEDYAADQEKAKLIRSAIEHTT----LKSVTVSSEIYYDPDPSSTVIEEDEE 1168
Query: 682 --QMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQ 739
Q+ F + + S+K + +L LE+ RAA K++ + Q ++
Sbjct: 1169 IIQLHFSLMDEET---ENSLK-------HQSPWLLRLEL---DRAAMNDKDLTMGQVGEK 1215
Query: 740 MEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERM 799
+++ ++D + V E+ + E+ + + V + D E +E+ M
Sbjct: 1216 IKETFKND--------------LFVIWSED-NAENLIIRCRVVRDPKTLDAEAEAEEDHM 1260
Query: 800 SEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNL 859
++ E+ +I R V+D+ V YD+K +P+
Sbjct: 1261 LKKIENTMLESITLR-----------GVQDITR----VVMMKYDRK---------VPNET 1296
Query: 860 FE-EKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKN 918
E K + +L+TDG+N++ + +D ++Y N + + GIEA + REV N
Sbjct: 1297 GEYHKVPEWVLETDGVNLSEVMTVPG-VDPTRIYTNSFIDIMNVLGIEAGRAALYREVYN 1355
Query: 919 VFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASM 977
V A G V+ RH++L+ D MT G +++ R+G R + + + +FE +E + +A
Sbjct: 1356 VIASDGSYVNYRHMALLVDVMTSQGFLMSVTRHGFNRADTGALMRCSFEETVEILFEAGA 1415
Query: 978 QGREDSLRAPSARVMLGQECRQGTGLFQL 1006
D S V+LGQ GTG F +
Sbjct: 1416 SAELDDCNGVSENVILGQMAPIGTGAFDV 1444
>gi|397135946|gb|AFO11468.1| RNA polymerase I, partial [Wickerhamiella domercqiae]
Length = 853
Score = 228 bits (581), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 141/420 (33%), Positives = 215/420 (51%), Gaps = 47/420 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S L V Q + P+ P+ G++QD + K++LRDTF+ A N+++ +
Sbjct: 311 RAELSQLCAVPLQIVSPQSNKPVMGIVQDTLAGIRKMTLRDTFIDYAAVQNILF---WVP 367
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + PP I KP PLWTGKQ+ S I +GI ++F
Sbjct: 368 DWDGVVPPPAILKPKPLWTGKQMASMAI----------------PAGIF-MQRFDDNNP- 409
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+H+ D + + G+++ G+++KK GST GL+H ++ G S + K+
Sbjct: 410 -LHSPKDNGMLVYKGQVMYGVVNKKTVGSTAGGLIHTIFREKGPYVCARFFSSIQKIVNF 468
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKAR----RLGTEAACNALGLPLDTDPEIISS 248
+L GF++G+ D + + R T I A+ R+ +A N L
Sbjct: 469 WLLHNGFSIGIGDTIADRATMRNVTNTIADAKQQVQRITDDAQANTLS------------ 516
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGS 308
P+ + +++ + V NN E + NN++ MV +G+KGS
Sbjct: 517 ---------PEPGMTLRESFEAAVILVLNNCRDTAGREAEMSLQDTNNVKQMVSAGSKGS 567
Query: 309 TVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFF 368
+N Q+S +GQ +EG+R A RTLP F+ + SP + GFV+ ++ G+ PQEFF
Sbjct: 568 FINISQMSACVGQQIVEGRRIAFGFVDRTLPHFMRDDYSPESKGFVENSYLRGLTPQEFF 627
Query: 369 FHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
FH MAGREGLIDTAVKT+ +GY+QR LVK LE + V YD + R+S +IQ YGEDGLD
Sbjct: 628 FHAMAGREGLIDTAVKTAETGYIQRRLVKALEDIMVQYDGSARNSLGDVIQFTYGEDGLD 687
>gi|449456849|ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1-like [Cucumis sativus]
Length = 1832
Score = 228 bits (581), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 148/430 (34%), Positives = 216/430 (50%), Gaps = 60/430 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ G++QD ++ K++ RDTF+T+ +MN + +
Sbjct: 511 RAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMNTL---MWWE 567
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVI---INLTPKDKVIIRHGELLSGILDKKQFGST 129
+ + + P I KP PLWTGKQV + +I INLT + H E +G +
Sbjct: 568 DFDGKIPAPAILKPQPLWTGKQVFNLIIPKQINLT---RTSAWHSESETGHITPG----- 619
Query: 130 QYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKL 189
DT V I GELLSG L KK G++ L+H +W+ G + A L L
Sbjct: 620 ---------DTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWL 670
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
+L + F++G+ D + K + I+ A+ A L+ +P
Sbjct: 671 VNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPG----- 725
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQV----------CLPEGLIEPFPANNLQF 299
++++D N +NQV + L E +NNL+
Sbjct: 726 -------------------RTMMDSFENKVNQVLNKARDDAGSSAQKSLSE---SNNLKA 763
Query: 300 MVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFM 359
MV +G+KGS +N Q++ +GQ +EGKR RTLP F + P + GFV+ ++
Sbjct: 764 MVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYL 823
Query: 360 TGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQ 419
G+ PQEFFFH M GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +IQ
Sbjct: 824 RGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQ 883
Query: 420 VLYGEDGLDV 429
LYGEDG+D
Sbjct: 884 FLYGEDGMDA 893
Score = 135 bits (340), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 131/460 (28%), Positives = 217/460 (47%), Gaps = 67/460 (14%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
L SL PGE +G +AAQSIGEP+TQMTLNTFH+AG NVTLG+PRLREI+ +A K IK
Sbjct: 1073 LQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA-KRIK 1131
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCF 687
TPS+ + P+ K +++A + ++ T+ V + ++ W + P + + F
Sbjct: 1132 TPSLSVYLKPEANKTKERAKTVQCALEYTTLRSVTQATEV--WYDPDPMSTI-IEEDIDF 1188
Query: 688 IPAHMYRDKTSVKPSKIIDHFERKFL-KELEVAIAKRAAQGLKNMNIEQSRDQMEDDV-- 744
+ ++ + P KI R L +E+ V A + +N+E +DD+
Sbjct: 1189 VKSYYEMPDEEIAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLE-----FDDDLTC 1243
Query: 745 --EDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSER 802
DD E + R+ + +DE E +S ED+ F + + ++E
Sbjct: 1244 IFNDDNAE------KLILRIRIMNDEAPKGELTDES------AEDDVFLKKIESNMLTE- 1290
Query: 803 EEDDNTSNIGERFKIEFR---DSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNL 859
+ R D VF+K V+K+ ++ F P
Sbjct: 1291 --------------MALRGIPDINKVFIK-----CGKVNKFDENEG--------FKP--- 1320
Query: 860 FEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNV 919
E + +L T+G+N+ + + +D + N + + GIEA R ++ E++ V
Sbjct: 1321 ----EMEWMLDTEGVNLLAVMTHED-VDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVV 1375
Query: 920 FAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSF-IQKMTFEMPLEKIRQASMQ 978
+ G V+ RHL+++ D MT+ G +A+ R+GI N + + + +FE ++ + A++
Sbjct: 1376 ISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVY 1435
Query: 979 GREDSLRAPSARVMLGQECRQGTGLFQLR-NREKKKKKVE 1017
D LR + +MLGQ GTG L N E K +E
Sbjct: 1436 AETDHLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIE 1475
>gi|397135954|gb|AFO11472.1| RNA polymerase I, partial [Phaffomyces opuntiae]
Length = 871
Score = 228 bits (581), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 150/414 (36%), Positives = 222/414 (53%), Gaps = 42/414 (10%)
Query: 19 LMNVSS---QYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCILNTE 75
LMN+++ Q + P+ P G++QD + K++LRD+F+ + MN++Y I + +
Sbjct: 314 LMNIAAVPLQIVSPQSNKPCMGIVQDTLAGVRKMTLRDSFIEYDQMMNILY---WISDWD 370
Query: 76 IRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYGLVH 135
P I KP PLW+GKQ+LS I PK + R E G+T +
Sbjct: 371 GVIPQPAILKPKPLWSGKQMLSMTI----PKGIHLQRFDE-----------GTT----LL 411
Query: 136 AVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQ 195
+ D + I +GE+L G++DKK G+T GL+H V GA L + K+ +L
Sbjct: 412 SPKDNGMLIVNGEILFGVVDKKTVGATNGGLIHTVMREKGAAQCADLFGKIQKVVNFWLL 471
Query: 196 RVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQEAYA 255
GF++G+ D + ++ T+ I A+ E A L + L+E+
Sbjct: 472 HNGFSIGIGDTIADAGTMKEITEAIAIAKEKVDEVTLEAQQNKLTAKHGMT---LRES-- 526
Query: 256 SIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQI 315
F + R DK + +V L +GL NN++ MV +G+KGS +N Q+
Sbjct: 527 ----FEDNVIRYLNEARDKAGRSA-EVNL-KGL------NNVKQMVSAGSKGSFINIAQM 574
Query: 316 SCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGR 375
S +GQ +EGKR A + RTLP F + SP + GFV+ ++ G+ PQEF+FH M GR
Sbjct: 575 SACVGQQSVEGKRIAFGFADRTLPHFAKDDYSPESKGFVENSYLRGLTPQEFYFHAMGGR 634
Query: 376 EGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
EGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S ++IQ +YGEDGLD
Sbjct: 635 EGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGNIIQFIYGEDGLDA 688
>gi|397135956|gb|AFO11473.1| RNA polymerase I, partial [Komagataella pastoris]
Length = 872
Score = 228 bits (581), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 147/419 (35%), Positives = 220/419 (52%), Gaps = 39/419 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S L V Q + P+ P+ G++QD + K++LRDTF+ + MN+++ +
Sbjct: 311 RAELSQLCAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDTFIEYEQVMNMLF---WVP 367
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + P I KP PLWTGKQ+LS I SGI ++ G
Sbjct: 368 SWDGVVPQPAIMKPKPLWTGKQLLSIAIP----------------SGIHLQRTDGGNS-- 409
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ + D + I G ++ G++DKK GS GL+H V G + L + K+
Sbjct: 410 -LLSPKDNGMLIVDGNVMFGVVDKKTVGSGGGGLIHTVMREKGPKICAELFGNIQKVVNY 468
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + ++ T I+ A+ E A L+ P + L+E
Sbjct: 469 WLLHNGFSIGIGDAIADASTMKEITHAISSAKEQVQEIIYKAQHNELELKPGMT---LRE 525
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
+ F ++ R D + ++ L + NN++ MV +G+KGS +N
Sbjct: 526 S------FEGEVSRTLNDARDSAGRSA-EMNLKD-------LNNVKQMVSAGSKGSFINI 571
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EGKR A + R+LP F + SP + GFV+ ++ G+ PQEFFFH M
Sbjct: 572 AQMSACVGQQMVEGKRIAFGFADRSLPHFTKDDFSPESKGFVENSYLRGLTPQEFFFHAM 631
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTK 431
AGREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S +IQ LYGEDGLD T+
Sbjct: 632 AGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFLYGEDGLDGTQ 690
>gi|254571371|ref|XP_002492795.1| RNA polymerase II largest subunit B220 [Komagataella pastoris
GS115]
gi|238032593|emb|CAY70616.1| RNA polymerase II largest subunit B220 [Komagataella pastoris
GS115]
gi|328353197|emb|CCA39595.1| DNA-directed RNA polymerase II subunit A [Komagataella pastoris CBS
7435]
Length = 1743
Score = 228 bits (580), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 152/435 (34%), Positives = 228/435 (52%), Gaps = 46/435 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S L V Q + P+ P+ G++QD + K++LRDTF+ + MN+++ +
Sbjct: 499 RAELSQLCAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDTFIEYEQVMNMLF---WVP 555
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + P I KP PLWTGKQ+LS I SGI ++ G
Sbjct: 556 SWDGVVPQPAILKPKPLWTGKQLLSIAIP----------------SGIHLQRTDGGNS-- 597
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ + D + I G+++ G++DKK GS GL+H V G + L + K+
Sbjct: 598 -LLSPKDNGMLIVDGKVMFGVVDKKTVGSGGGGLIHTVMREKGPKICAELFGNIQKVVNY 656
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + ++ T I+ A+ E A L+ P + L+E
Sbjct: 657 WLLHNGFSIGIGDAIADASTMKEITHAISSAKEQVQEIIYKAQHNELELKPGMT---LRE 713
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
+ F ++ R D + ++ L + NN++ MV +G+KGS +N
Sbjct: 714 S------FEGEVSRTLNDARDSAGRSA-EMNLKD-------LNNVKQMVSAGSKGSFINI 759
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EGKR A + R+LP F + SP + GFV+ ++ G+ PQEFFFH M
Sbjct: 760 AQMSACVGQQMVEGKRIAFGFADRSLPHFTKDDFSPESKGFVENSYLRGLTPQEFFFHAM 819
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTK- 431
AGREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S +IQ LYGEDGLD T+
Sbjct: 820 AGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFLYGEDGLDGTQV 879
Query: 432 -RQYL-----TDKQF 440
RQ + +DK F
Sbjct: 880 ERQTIDTIPGSDKAF 894
Score = 92.8 bits (229), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 50/98 (51%), Positives = 68/98 (69%), Gaps = 1/98 (1%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
SL +PGE VGV+AAQSIGEP+TQMTLNTFH+AG NVTLG+PRL+EIL +A K IKTP
Sbjct: 1058 SLVHPGEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVA-KNIKTP 1116
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKI 667
++ + ++ +KA + S+ T+ +V +I
Sbjct: 1117 ALTVYLDREIALDIEKAKVIQSSIEYTTLKNVTSATEI 1154
Score = 77.4 bits (189), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 75/144 (52%), Gaps = 2/144 (1%)
Query: 869 LKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 928
L+TDGIN+ + + D ++ Y N + S GIEA + +E+ NV A G V+
Sbjct: 1309 LETDGINLAEVMAVPGV-DSSRTYSNSFVEILSVLGIEATRSSLYKEILNVIAFDGSYVN 1367
Query: 929 PRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAP 987
RH++L+ D MT G +A+ R+GI R + + + +FE +E + +A D R
Sbjct: 1368 YRHMALLVDVMTSRGYLMAITRHGINRADTGALMRCSFEETVEILFEAGAAAELDDCRGV 1427
Query: 988 SARVMLGQECRQGTGLFQLRNREK 1011
S VMLGQ GTG F + EK
Sbjct: 1428 SENVMLGQLAPMGTGAFDVMIDEK 1451
>gi|168920044|gb|AAV54050.2| RNA polymerase II largest subunit [Boletellus projectellus]
Length = 997
Score = 228 bits (580), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 152/435 (34%), Positives = 227/435 (52%), Gaps = 46/435 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S + V Q + P+ P+ G++QD + K +LRDTFL + N++ L +
Sbjct: 413 RAELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLDWQQVQNIL---LWVP 469
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ P I KP PLWTGKQ++S VI P+ I R E S
Sbjct: 470 EWDGNVPTPAIIKPKPLWTGKQIISMVI----PRGINIHRAPEPKSS------------- 512
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ ++D + + +GE+L GI+DKK G+TQ GL+H V+ G E S+ + + +
Sbjct: 513 --NPLFDDGMMVDNGEILFGIVDKKTVGATQGGLIHVVFREKGPEATRSVFTGIQMVVNF 570
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + T+ I ++ E +A L P + +
Sbjct: 571 WLFHNGFSIGIGDTIAGPNVMEFITRRIKDKKQQVAEIIEDAYNDRLKPMPGMTIRE--- 627
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
F ++++R+ D + Q L E NN++ MV +G+KGS +N
Sbjct: 628 ------SFESKVERELNRARDD-SGQYAQKNLKED-------NNVKQMVTAGSKGSYINI 673
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EG+R RTLP F + SP A GFV+ ++ G+ PQEFFFH M
Sbjct: 674 SQMSVCVGQQSVEGRRIPFGFRHRTLPHFTKDDFSPEARGFVENSYLRGLTPQEFFFHAM 733
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD--VT 430
AGREGLIDTAVKT+ +GY+QR LVK LE + V YD TVR+S L+Q +YGEDG+D
Sbjct: 734 AGREGLIDTAVKTAETGYIQRRLVKALEDVMVCYDGTVRNSLGDLVQFIYGEDGMDGAFI 793
Query: 431 KRQYL-----TDKQF 440
+RQ + +DK+F
Sbjct: 794 ERQKIDTFGTSDKEF 808
Score = 44.7 bits (104), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/25 (80%), Positives = 21/25 (84%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMT 594
SL NPGE G LAAQSIGEP+TQMT
Sbjct: 973 SLVNPGEMCGTLAAQSIGEPATQMT 997
>gi|336041421|gb|AEH95288.1| RNA polymerase II largest subunit [Malawimonas californiana]
Length = 1014
Score = 228 bits (580), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 146/419 (34%), Positives = 221/419 (52%), Gaps = 32/419 (7%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE +M V Q + P+ P+ G++QD ++ + RDTF+ R +LV L L
Sbjct: 415 RAEIEEIMMVPRQIVSPQANKPVMGIVQDSLLGTKLFTKRDTFIER----DLVMNVLMWL 470
Query: 73 NT-EIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQY 131
+T E + P + KP LWTGKQ+ S +I P ++ + + L++ +F T
Sbjct: 471 STFEGKVPKPAMLKPKVLWTGKQIFSMLI----PPVNLLRKSAQAPERELNE-EFTYTDT 525
Query: 132 GLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFT 191
+ + V I +GE++SGI+ K+ GS+ LVH VW+ HG E + L + +
Sbjct: 526 RVC-----SLVCIENGEVISGIICKQTVGSSSGSLVHVVWNEHGHEATRNFLDSVQAVVN 580
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQ 251
+L GF++G+ D + +E ++ T+ I A+ A L+ P L
Sbjct: 581 QWLLSRGFSVGIGDTIADKETMQQITRTIAAAKAQVASLIKQAQNHNLEPQP---GRTLM 637
Query: 252 EAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVN 311
E F ++++ + DK + Q +NN++ MV +G+KGS +N
Sbjct: 638 ET------FESKVNSALNTARDKAGKSAEQSLRS--------SNNVKEMVTAGSKGSFIN 683
Query: 312 TMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHC 371
Q+ +GQ +EGKR RTLP F+ + SP A GFV+ ++ G+ PQEFFFH
Sbjct: 684 IAQMIACVGQQNVEGKRIPYGFRNRTLPHFVAADYSPEARGFVENSYLRGLNPQEFFFHA 743
Query: 372 MAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVT 430
M GREGLIDTAVKTS +GY+QR L+K +E + V YD TVR+S +IQ LYGEDG D T
Sbjct: 744 MGGREGLIDTAVKTSETGYIQRRLIKAMEDVMVRYDGTVRNSLGDVIQFLYGEDGFDGT 802
>gi|413915246|gb|AFW21485.1| RNA polymerase II largest subunit [Claviceps purpurea]
Length = 1756
Score = 228 bits (580), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 152/424 (35%), Positives = 218/424 (51%), Gaps = 49/424 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + + P+ PL G++QD + K+ RDTF+ + MNL+ L +
Sbjct: 512 RAEVKELCLVPNNIVSPQKNGPLMGIVQDSLAGAYKMCRRDTFIEKEMVMNLM---LWVP 568
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N + P I KP P WTGKQ++S VI PK+ I + + LD
Sbjct: 569 NWDGVIPQPAILKPRPRWTGKQIISMVI----PKE--ISLNSPESADALDNADI------ 616
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ DT + I+ GELL G+L KK GS G+VH ++ G E A++ L+ + ++ T
Sbjct: 617 ---PLKDTGLLIQSGELLYGLLKKKNIGSAAGGIVHLSYNELGPEGAMAFLNGVQQVVTY 673
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKAR----RLGTEAACNALGLPLDTDPEIISS 248
+L G ++G+ D + ++ K I+ + RL +A N L
Sbjct: 674 WLLNNGHSIGIGDTVPDKQTIEKVQAHIDTQKAEVARLTAQATANEL------------- 720
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKV---TNNINQVCLPEGLIEPFPANNLQFMVESGA 305
EA + RA + + L+ Q L + +NN M ESG+
Sbjct: 721 ---EALPGM-NVRATFENKVSMALNSARDQAGTTTQRSLKD-------SNNAVTMAESGS 769
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS++N Q++ L+GQ +EGKR RTLP F + SP A GFV+ ++ G+ P
Sbjct: 770 KGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPS 829
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EFFFH MAGREGLIDTAVKT+ +GY+QR LVK LE L+ YD TVR+S ++Q LYGED
Sbjct: 830 EFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSAQYDGTVRNSLGDVVQFLYGED 889
Query: 426 GLDV 429
GLD
Sbjct: 890 GLDA 893
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/64 (73%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
S +PGE VGVLAAQSIGEP+TQMTLNTFHFAG NVTLG+PRL+EIL +A K IKTP
Sbjct: 1075 SFISPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLA-KDIKTP 1133
Query: 630 SMEI 633
SM +
Sbjct: 1134 SMAV 1137
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 81/152 (53%), Gaps = 12/152 (7%)
Query: 861 EEKESKHLLKTDGINVNFISQYRHLLDLN-----KLYVNDIHYMASTYGIEAANRVIIRE 915
+EK ++ L T G S R +L +N + Y ND+ + +GIEAA +++E
Sbjct: 1324 DEKCTQWYLDTSG------SSLREVLSVNGVDPTRTYTNDLWQIVEVFGIEAARSALVKE 1377
Query: 916 VKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQ 974
+ NV A G V+ RH++L+ D MT+ G A+ R+GI R + + + +FE +E + +
Sbjct: 1378 LTNVLAFDGSYVNHRHIALLVDVMTYRGIISAVTRHGINRADTGALMRCSFEETVEILLE 1437
Query: 975 ASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
A+ G D R S +MLGQ GTG F +
Sbjct: 1438 AAASGELDDCRGISENIMLGQLAPMGTGSFDV 1469
>gi|403175763|ref|XP_003334524.2| DNA-directed RNA polymerase II subunit A [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|375171744|gb|EFP90105.2| DNA-directed RNA polymerase II subunit A [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 1703
Score = 228 bits (580), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 143/422 (33%), Positives = 222/422 (52%), Gaps = 39/422 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE + + V + P+ P+ G++QD + K +LRD F+ R N++ L +
Sbjct: 516 RAELAQIAWVPRNIVSPQANKPVMGIVQDTLCGVRKFTLRDCFMDRDFVQNIL---LWVP 572
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ PP I KP PLWTGKQ+LS I PK ++R E + I
Sbjct: 573 GWDGVVPPPAILKPKPLWTGKQILSMCI----PKGINLLRDDENQTSI------------ 616
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ D + I GE++ G++DKK G++Q GL+H ++ G + L S + +
Sbjct: 617 ---PIADKGLWIEDGEIVYGVVDKKCVGASQGGLIHVIFREKGPQVTRGLFSGIQMVVNY 673
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + + T I++A+R +E A L +P + ++E
Sbjct: 674 WLLHHGFSIGIGDTVPDKATMEAITNFISEAKREVSETISLAQEDKLQPEPGMT---IRE 730
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
+ F A+++R + D + Q + NN++ MV +G+KGS +N
Sbjct: 731 S------FEAKVNRALNTARDNAGRSAEQSLKDD--------NNVKQMVTAGSKGSFINI 776
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EGKR RTLP F + SP + GFV+ ++ G+ PQEFFFH M
Sbjct: 777 SQMSACVGQQSVEGKRIPYGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPQEFFFHAM 836
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKR 432
AGREGLIDTAVKT+ +GY+QR L+K LE + V YD TVR+S ++Q +YGEDG+D
Sbjct: 837 AGREGLIDTAVKTAETGYIQRRLLKALEDVMVTYDGTVRNSLGDIVQFVYGEDGVDGGTV 896
Query: 433 QY 434
+Y
Sbjct: 897 EY 898
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 133/439 (30%), Positives = 209/439 (47%), Gaps = 51/439 (11%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
SLA PGE G LAAQSIGEP+TQMTLNTFH+AG NVTLG+PRL+EI+ +AT IKTP
Sbjct: 1074 SLAAPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATN-IKTP 1132
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMN-YQMKFCFI 688
S+ + ++ + A + + T+ V +I P P + F+
Sbjct: 1133 SLTVYLNENIANDIEAAKDIQTELAHTTLKTVTASTQII----YDPNPKSTIVEEDLDFV 1188
Query: 689 PAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDE 748
A V+ +DH + +L LE+ AK + L +MN SR + + + D
Sbjct: 1189 DAFFAVPDDEVEAQ--LDH-QSPWLLRLELDRAKMLDKKL-SMNFVASR--IAEVFKSD- 1241
Query: 749 GEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNT 808
+ + E+ E+ ++ + E D D +E + EE + RE D
Sbjct: 1242 -------------LFIIWSEDNAEKLTIRCRAMQSSEADKDDDEGQVEEDVFLREIDQML 1288
Query: 809 SNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNLFEEKESKHL 868
I R VF+ QHN+ + S S FE K ++ +
Sbjct: 1289 GGISLR---GVEGIQRVFML----QHNVNYINS---------------SGEFERK-TEWV 1325
Query: 869 LKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 928
L+TDGIN+ + +D + N+ + + G+EAA +++E++NV G V+
Sbjct: 1326 LETDGINLKEVLCVDG-VDPIRTVSNNCVEILTVLGVEAARASLLKELRNVIEFDGSYVN 1384
Query: 929 PRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAP 987
RHL+L+ D MT+ G+ +A+ R+GI R + + + +FE +E + A+ G +D
Sbjct: 1385 YRHLALLCDLMTNRGSLMAITRHGINRTDTGPLMRCSFEETVEILMDAAALGEKDHCTGV 1444
Query: 988 SARVMLGQECRQGTGLFQL 1006
+ V+LGQ GTG F +
Sbjct: 1445 AENVLLGQLAPMGTGAFDV 1463
>gi|391332786|ref|XP_003740810.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Metaseiulus occidentalis]
Length = 1851
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 155/435 (35%), Positives = 224/435 (51%), Gaps = 37/435 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V Q + P+ P+ G++QD + + K++ RD +L + + MNL+ L I
Sbjct: 506 RAEIEQLAMVPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVYLEKDQMMNLL-MFLPIW 564
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N ++ P I KP PLWT KQ+ S +I P + +IR D + G
Sbjct: 565 NGKVPI--PAILKPKPLWTAKQLFSLII----PGNVNLIRTHSTHPDEEDDGPYKWISPG 618
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
DT V I HG+LLSGI+ KK G++ L+H ++ G E A + S L +
Sbjct: 619 ------DTKVIIEHGQLLSGIVCKKTVGASAGSLMHVLFVEMGHEVAGAFYSHLQTVVNA 672
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L G ++G+ D + Q+ I KA++ E A L+ P + L++
Sbjct: 673 WLLYEGHSIGIGDTIADQQTYMDIQNTIKKAKQDVIEVIEKAHNDELEPTP---GNTLRQ 729
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
F Q++R DK T Q L E NN + MV SGAKGS +N
Sbjct: 730 T------FENQVNRILNDARDK-TGGSAQKSLSE-------FNNFKSMVVSGAKGSKINI 775
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+ +GQ +EGKR RTLP F+ + P + GFV+ ++ G+ P EFFFH M
Sbjct: 776 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDFGPESRGFVENSYLAGLTPSEFFFHAM 835
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD--VT 430
GREGLIDTAVKT+ +GY+QR L+K +E + + YD TVR+S+ +IQ YGEDGLD
Sbjct: 836 GGREGLIDTAVKTAETGYIQRRLIKAMESVMICYDGTVRNSNGQVIQFRYGEDGLDGCCV 895
Query: 431 KRQYL-----TDKQF 440
+ QYL +D+QF
Sbjct: 896 ETQYLATIKPSDRQF 910
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
S PGE VG LAAQS+GEP+TQMTLNTFH+AG NVTLG+PRL+EI+ + +K KTP
Sbjct: 1073 SQGQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINI-SKQPKTP 1131
Query: 630 SMEI 633
S+ +
Sbjct: 1132 SLTV 1135
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 80/143 (55%), Gaps = 2/143 (1%)
Query: 865 SKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 924
S+ LL+TDG ++ + R + D + Y NDI + S GIEA + + +E+ +V + G
Sbjct: 1327 SEWLLETDGTSLMRVLSERDV-DPVRTYSNDIIEVFSVLGIEAVRKAVEKEMNHVISFDG 1385
Query: 925 IEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDS 983
V+ RHL+L+ D MT G +A+ R+GI R + + + +FE ++ + A+ D
Sbjct: 1386 SYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDILMDAAFHAEADK 1445
Query: 984 LRAPSARVMLGQECRQGTGLFQL 1006
L+ S ++LG+ R GTG F L
Sbjct: 1446 LKGVSENIILGKLARMGTGAFDL 1468
>gi|397135914|gb|AFO11452.1| RNA polymerase I, partial [Cephaloascus fragrans]
Length = 871
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 146/419 (34%), Positives = 219/419 (52%), Gaps = 39/419 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S + V Q + P+ P+ G++QD + K++LRD F+ + MN++Y I
Sbjct: 310 RAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIEYDQVMNILY---WIP 366
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ P I KP PLWTGKQ++S I PK + R + S + K
Sbjct: 367 GWDGVIPKPAILKPKPLWTGKQMVSMAI----PKGIHLQRFDDGNSMLSPK--------- 413
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
DT + I +GE++ G++DKK G+T GL+H V G +L + K+
Sbjct: 414 ------DTGMLIINGEIMFGVVDKKTVGATGGGLIHTVMREKGPAICATLFGNIQKVVNY 467
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + R T I++A++ E A L +P + L+E
Sbjct: 468 WLLHNGFSIGIGDTIADASTMRDITNTISEAKQKVQEIIIEAQQNTLSPEPGMT---LRE 524
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
++ + + +V N + NN++ MV SG+KGS +N
Sbjct: 525 SF--------------EHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINI 570
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EGKR + R+LP F + SP + GFV+ ++ G+ PQEFFFH M
Sbjct: 571 SQMSACVGQQIVEGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAM 630
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTK 431
AGREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S +IQ +YGEDG+D T+
Sbjct: 631 AGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFIYGEDGIDGTQ 689
>gi|397135912|gb|AFO11451.1| RNA polymerase I, partial [Yamadazyma triangularis]
Length = 859
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 150/419 (35%), Positives = 212/419 (50%), Gaps = 42/419 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S + V Q + P+ P+ G++QD + K++LRD F+ + MN++Y I
Sbjct: 311 RAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDNFIEYDQVMNMLY---WIP 367
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N + PP I KP PLW+GKQ+LS I PK GI +
Sbjct: 368 NWDGVIPPPAIVKPKPLWSGKQLLSMAI----PK------------GIHLQXDVNXMSPN 411
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
D + I GE++ G++DKK GST GL H V G + L S L K+
Sbjct: 412 ------DGGMXIVDGEIIFGVVDKKTVGSTGGGLXHTVMREKGPQVCAQLFSSLQKVVNF 465
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + + T I A+ E NA LD +P + L+E
Sbjct: 466 WLLHNGFSIGIGDTIADSRSMNQVTSTIEDAKAKVQEIILNAQQNKLDPEPGMT---LRE 522
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
++ + + +V N + NN++ MV SG+KGS +N
Sbjct: 523 SF--------------EHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINI 568
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EGKR + RTLP F + SP + GFV+ ++ G+ PQEFFF M
Sbjct: 569 SQMSACVGQQIVEGKRIPFGFADRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFXAM 628
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTK 431
AGREGLIDTAVKT+ +GY+QR LVK LE + V YD T R+S IQ +YGEDGLD T+
Sbjct: 629 AGREGLIDTAVKTAETGYIQRRLVKALEDIMVXYDGTTRNSLGDXIQXIYGEDGLDGTQ 687
>gi|290983563|ref|XP_002674498.1| RNA polymerase II [Naegleria gruberi]
gi|284088088|gb|EFC41754.1| RNA polymerase II [Naegleria gruberi]
Length = 1757
Score = 227 bits (578), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 146/427 (34%), Positives = 224/427 (52%), Gaps = 45/427 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAE LM V + P+ P+ L+QD +++ +KL+ RD F+ + MN + + ++
Sbjct: 475 KAELLELMMVPRNIITPQSNRPVIALVQDTLLAASKLTRRDVFIAKDLMMNCL---MHLI 531
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVI--INLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ + + P I KP PLWTGKQ+ + ++ +NL + H +L DKK
Sbjct: 532 DFDGKLPVPAILKPKPLWTGKQLFTFLLPKVNL---ENTSSTHEDLT----DKKDH---- 580
Query: 131 YGLVHAV--WDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAK 188
L H + +DT V I GEL+SG+LDKK GS+ L+H + + G L +
Sbjct: 581 --LDHDIPEFDTKVLIDRGELVSGVLDKKSLGSSHGSLIHIIVNEKGVNEGKKFLGQCQR 638
Query: 189 LFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISS 248
+ +L GF++G+ D + + + + I KA + D ++I
Sbjct: 639 VINHWLINRGFSIGIGDTIADKATMEQIEETIRKAEK----------------DVKLIVK 682
Query: 249 QLQEAYASIPQFRAQ----IDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESG 304
QE + RA+ I + +++ ++KV N + + NN++ MV +G
Sbjct: 683 DAQEG-----KLRAEAGRTIQQSFENQVNKVLNKAREDAGNKAKKSLKDDNNIKSMVTAG 737
Query: 305 AKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQP 364
+KGS +N QI +GQ +EGKR RTLP F + P + GFV ++ G+ P
Sbjct: 738 SKGSYINISQIIACVGQQNVEGKRIPYGFRNRTLPHFAQDDHGPESRGFVANSYLRGLTP 797
Query: 365 QEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGE 424
QEFFFH M GREGLIDTAVKTS +GY+QR L+K +E + V YD TVRD+ +++Q LYGE
Sbjct: 798 QEFFFHTMGGREGLIDTAVKTSETGYIQRRLIKAMEDIMVKYDGTVRDAQGNVVQFLYGE 857
Query: 425 DGLDVTK 431
DG+D K
Sbjct: 858 DGMDAHK 864
Score = 142 bits (359), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 132/441 (29%), Positives = 213/441 (48%), Gaps = 40/441 (9%)
Query: 571 LANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPS 630
LA PGE VG +AAQSIGEP+TQMTLNTFHFAG NVTLG+PRL+E+L +A K IKTP
Sbjct: 1066 LAQPGEMVGSVAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKELLNVA-KNIKTPG 1124
Query: 631 MEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPH---MNYQMKFCF 687
+ I + +KA + + + T+ V I PEP + +F
Sbjct: 1125 LTIYLNNEYIGDFEKAKMVKEDLEYTTLGHVTAATSIV----YDPEPANSVIEEDREFIE 1180
Query: 688 IPAHMYRDKTSVKPSKIIDHFERKF-LKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVED 746
+D T+V S ++ + +F L ++ ++ AQ K + E+ ++ + D
Sbjct: 1181 ELLEELKD-TAVLDSTTLNPWSLRFELDKMMMSDTLTMAQVAKKIQ-EEFQNDITCFYSD 1238
Query: 747 DEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDD 806
D A + V + D++ E+DA + ++P DE EED
Sbjct: 1239 DN------ADKLILVVRIHKDDKEKEKDAQVA------------KDPSDEVLRKLEEEDI 1280
Query: 807 NTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNLFEEKESK 866
S + ++E + +K + + + DKK +F S + K+
Sbjct: 1281 ENSTVEFLRRLESNMLNELALKGYKDLKKVFLREENDKK-------VFSSSGVATVKQ-- 1331
Query: 867 HLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIE 926
+L T+G N+ + + + +D ND++ + GIEA ++RE++ V G
Sbjct: 1332 WVLDTEGCNLLAVLSHPY-VDHTITTSNDVNEILDVLGIEACRNALMREMRKVIEFDGSY 1390
Query: 927 VDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLR 985
V+ RHL+++ D MTH G +A+ R+GI R + + + +FE +E + +A+ D+L+
Sbjct: 1391 VNYRHLAILCDVMTHRGGLMAITRHGINRSDTGPLMRCSFEETVEILIEAATFADTDTLK 1450
Query: 986 APSARVMLGQECRQGTGLFQL 1006
SA VM+GQ GTG F L
Sbjct: 1451 GVSANVMVGQLAPIGTGCFGL 1471
>gi|3511287|gb|AAC62246.1| DNA-dependent RNA polymerase II largest subunit, partial [Breviata
anathema]
Length = 1690
Score = 227 bits (578), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 150/422 (35%), Positives = 225/422 (53%), Gaps = 25/422 (5%)
Query: 14 AEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCILN 73
+E LM V Q + P+ SP G++QD ++ + +S RDTFLT MNL AL I
Sbjct: 409 SEVKNLMAVPFQIVTPQKNSPCMGVVQDSLLGCSLISRRDTFLTEDVMMNL---ALVISY 465
Query: 74 TEIRTLPPTIWKPMPLWTGKQVLSTVII-NLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ P I +P PLWTGKQ S ++ +L+ K K S ++ + Q
Sbjct: 466 DPDKIPQPAILRPKPLWTGKQAFSMLLPKDLSYKGKCGFYFNAEQSV---SREVAAAQEE 522
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFG-STQYGLVHAVWDTHGAEHAISLLSCLAKLFT 191
++++ D+ V I+ G+L +G++ K G S Q ++H +W G A LS + L
Sbjct: 523 YMNSLLDSVVRIKKGQLHTGVITNKAVGKSGQGSIIHILWKDQGPMAARDFLSRVQLLTN 582
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQ 251
Y+ GF++G D L + + I A+R + + +D D ++Q
Sbjct: 583 AYILTRGFSVGTEDTLADPDTLQAVKAEIEGAKR--------NVKIHID-DARAGRLKVQ 633
Query: 252 EAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVN 311
+ + F A+ + KSL D ++N + L NN + M+ESG+KGS +N
Sbjct: 634 AGRSLVESFEAKTN---KSLQDALSNAGKK-----SLSSLKYDNNFKLMIESGSKGSEMN 685
Query: 312 TMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHC 371
QI+ ++GQ +EGKR A RTLP F + P A GFV+ +++G+ PQEFFFH
Sbjct: 686 ICQITGMVGQQNVEGKRIAFGFQRRTLPHFRKDDYEPEARGFVENSYVSGLSPQEFFFHM 745
Query: 372 MAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTK 431
M GREGLIDTAVKTS SGY+QR L+K +E ++V YD TVR++ ++Q YGEDG+D T
Sbjct: 746 MGGREGLIDTAVKTSESGYIQRKLMKSMEDISVKYDTTVRNAAGMILQFAYGEDGIDGTA 805
Query: 432 RQ 433
+
Sbjct: 806 HE 807
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 65/102 (63%), Gaps = 9/102 (8%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
+L PGE VG +AAQS GEP+TQMTLNTFH AG G NVTLG+PRL+E L+ A++TP
Sbjct: 995 ALVAPGEMVGAIAAQSFGEPTTQMTLNTFHSAGVGTKNVTLGVPRLKE-LINVNMALRTP 1053
Query: 630 SMEI----PFLPDMPKLEKKANRLAKSMTRITMADVLEKVKI 667
++ I PF E+ A ++ + T+ D++ + +I
Sbjct: 1054 NISIFVQDPFC----NSEENATKVPLHIKHTTVRDLVSRAEI 1091
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 1/120 (0%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D + N I + G+EAA +++E+++V G ++ RHL ++ D MT G
Sbjct: 1281 VDPYRTTTNSITVINDVLGVEAARAALLKELRDVLGFDGSYINIRHLLMLVDVMTFRGYL 1340
Query: 946 VAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
+++ R G+ R + + + +FE ++ ++ A+ D LR S +MLGQ GTG F
Sbjct: 1341 MSITRFGMNRTDNGILMRASFEETVDVLQDAAQFAGHDELRGVSDNIMLGQVAPVGTGTF 1400
>gi|374107397|gb|AEY96305.1| FADR086Cp [Ashbya gossypii FDAG1]
Length = 1738
Score = 227 bits (578), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 150/419 (35%), Positives = 221/419 (52%), Gaps = 41/419 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S L V Q + P+ P G++QD + K++LRDTF+ + +N++Y I
Sbjct: 498 RAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKMTLRDTFIELDQVLNMLY---WIP 554
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGI-LDKKQFGSTQY 131
+ + PTI KP PLW+GKQ+LS I SGI L + G+T
Sbjct: 555 DWDGVIPTPTILKPKPLWSGKQLLSMAI----------------PSGIHLQRFDEGTTYL 598
Query: 132 GLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFT 191
+ D + I G+++ G++DKK GS+ GL+H V G E L + K+
Sbjct: 599 ----SPKDNGMLIIDGQIIFGVVDKKTVGSSSGGLIHVVTREKGPEVCAKLFGNIQKVVN 654
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQ 251
+L GF++G+ D + ++ R+ T I A++ E A L + L+
Sbjct: 655 YWLLHNGFSIGIGDTIADEKTMREITDAIALAKKKVEEVTKEAQANLLTAKHGMT---LR 711
Query: 252 EAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVN 311
E+ F + R DK + +V L + NN++ MV +G+KGS +N
Sbjct: 712 ES------FEDNVVRYLNEARDKAGRSA-EVNLKD-------LNNVKQMVSAGSKGSFIN 757
Query: 312 TMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHC 371
Q+S +GQ +EGKR A + RTLP F + SP + GFV+ ++ G+ PQEFFFH
Sbjct: 758 IAQMSACVGQQSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHA 817
Query: 372 MAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVT 430
M GREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S ++IQ +YGEDG+D
Sbjct: 818 MGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGNIIQFVYGEDGMDAA 876
Score = 132 bits (332), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 128/449 (28%), Positives = 213/449 (47%), Gaps = 68/449 (15%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
L S+ +PGE VGVLAAQSIGEP+TQMTLNTFHFAG VT G+PRL+EIL +A K +K
Sbjct: 1054 LRSIVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVA-KNMK 1112
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNY------ 681
TPS+ + +L + +++ +L +S T L+ V + + P+P
Sbjct: 1113 TPSLTV-YLEESYATDQEKAKLIRSAIEHT---TLKSVTVASEIYYDPDPSSTVIEEDEE 1168
Query: 682 --QMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQ 739
Q+ F + + S+K + +L LE+ R A K++ + Q ++
Sbjct: 1169 IIQLHFSLMDEET---EASLK-------HQSPWLLRLEL---DRVAMTDKDLTMGQVGEK 1215
Query: 740 MEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERM 799
+++ ++D + V E+ E+ ++ + V + D E +E+ M
Sbjct: 1216 IKETFKND--------------LFVIWSEDNAEKLIIRC-RVVRDPKTLDAEAEAEEDHM 1260
Query: 800 SEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNL 859
++ E+ +I R V+D+ V YD+K +PS
Sbjct: 1261 LKKIENTMLESITLR-----------GVQDITR----VVMMKYDRK---------VPSET 1296
Query: 860 FE-EKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKN 918
E K + +L+TDG+N++ + +D ++Y N + + GIEA + +EV N
Sbjct: 1297 GEYHKIPEWVLETDGVNLSEVMSVPG-VDPTRIYTNSFIDIMNVLGIEAGRAALYKEVYN 1355
Query: 919 VFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASM 977
V A G V+ RH++L+ D MT G +++ R+G R + + + +FE +E + +A
Sbjct: 1356 VIASDGSYVNYRHMALLVDVMTSQGFLMSVTRHGFNRADTGALMRCSFEETVEILFEAGA 1415
Query: 978 QGREDSLRAPSARVMLGQECRQGTGLFQL 1006
D S V+LGQ GTG F +
Sbjct: 1416 AAELDDCSGVSENVILGQMAPIGTGSFDV 1444
>gi|330038842|ref|XP_003239717.1| DNA-directed RNA polymerase I chain-like protein [Cryptomonas
paramecium]
gi|327206641|gb|AEA38819.1| DNA-directed RNA polymerase I chain-like protein [Cryptomonas
paramecium]
Length = 1458
Score = 227 bits (578), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 139/423 (32%), Positives = 220/423 (52%), Gaps = 19/423 (4%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA L + +P + P+ LIQD+++S L+ +D FL + L+
Sbjct: 603 KAEAFVLSLTHNHSRIPTNSIPIRCLIQDYIVSSVLLTKKDNFLREEIFFYLLNCLFIEK 662
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + P I KP LWTGKQ+ S V+ N + + ++K +G +
Sbjct: 663 SLFCKFCFPIILKPRVLWTGKQLFSMVMKNSIASNSALFFESR---NKMNKIGYGEDE-- 717
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
T V IR+GELL G++D Q G ++G++HA+ + + + +L+ L+ L
Sbjct: 718 -------TLVLIRNGELLKGVIDASQLGKKKHGILHALHEKYDSTTVDDVLTNLSFLLMF 770
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNAL---GLPLD--TDPEIIS 247
+ + G T G+ D+++ + D+ RTK ++ R+L L G L+ + + I
Sbjct: 771 FQRSYGHTTGLNDLIISSKMDKFRTKGFSRERKLKKLIIRKILSKKGFFLEKLSKTKKIY 830
Query: 248 SQLQEAYASIPQFRA--QIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGA 305
S L A Q + Q KS+L K+ N + PE + N ++ SG+
Sbjct: 831 SFLNIAGLFFIQENSLRQFIFYVKSILTKICTNTIENNFPENIETNLDKNGFLAIILSGS 890
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS VN QI LGQ+ELEG + + LP F P+E+S + GF+ RF+TGI P
Sbjct: 891 KGSFVNFFQICTNLGQMELEGNCISRDYEFKVLPFFFPFEISCESNGFIVQRFLTGIDPP 950
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
+FFH MAGRE L+DT +KT++SGY+QR L+KH E + ++YD+TVR +IQ++Y ++
Sbjct: 951 GYFFHSMAGRESLLDTTIKTAQSGYIQRSLIKHFEDVNLNYDLTVRSMSNDIIQIIYFQN 1010
Query: 426 GLD 428
GL
Sbjct: 1011 GLS 1013
Score = 89.7 bits (221), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 86/154 (55%), Gaps = 11/154 (7%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
SL PGE VG++ QSIGEP TQMTLN+FHFAG+ ++ GIPR++EILM A+ +K P
Sbjct: 1099 SLYEPGEPVGIVTGQSIGEPCTQMTLNSFHFAGKIALSYATGIPRIKEILMTASNHVKNP 1158
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMN-YQMKFCFI 688
+ + F ++ K + K + +I D+++ + + + +MN + +K I
Sbjct: 1159 TTSVFFHKNLS--FKNYIFIEKRLKKIVYTDLIKTIVVYK--------NMNFFVIKIRLI 1208
Query: 689 PAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAK 722
+ Y+ + +K + I + F+ F K + + K
Sbjct: 1209 SKNRYKHQFLLKTNYIKNRFQYFFKKYTKFFLCK 1242
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 77/135 (57%), Gaps = 1/135 (0%)
Query: 872 DGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRH 931
+GIN F+ + LL++NK++ NDI + YGIEA+ I E++ +F + I ++ H
Sbjct: 1320 NGINFCFLWENADLLNINKIFTNDISEILLIYGIEASRAAIFLELETIFRIQAISINKHH 1379
Query: 932 LSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARV 991
+ L++DYMT SG + +R ++ SF QK+++E L I A++ D + +PS+ +
Sbjct: 1380 IDLISDYMTKSGKIKSFSRTQMKEKESF-QKISYETALNFITNAAINQIYDQIDSPSSSI 1438
Query: 992 MLGQECRQGTGLFQL 1006
G+ C G F +
Sbjct: 1439 CTGKVCNSGMRHFDI 1453
>gi|302307500|ref|NP_984182.2| ADR086Cp [Ashbya gossypii ATCC 10895]
gi|442570012|sp|Q75A34.2|RPB1_ASHGO RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit 1; Short=RNA polymerase
II subunit B1; AltName: Full=DNA-directed RNA polymerase
III largest subunit
gi|299789031|gb|AAS52006.2| ADR086Cp [Ashbya gossypii ATCC 10895]
Length = 1745
Score = 227 bits (578), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 150/419 (35%), Positives = 221/419 (52%), Gaps = 41/419 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S L V Q + P+ P G++QD + K++LRDTF+ + +N++Y I
Sbjct: 498 RAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKMTLRDTFIELDQVLNMLY---WIP 554
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGI-LDKKQFGSTQY 131
+ + PTI KP PLW+GKQ+LS I SGI L + G+T
Sbjct: 555 DWDGVIPTPTILKPKPLWSGKQLLSMAI----------------PSGIHLQRFDEGTTYL 598
Query: 132 GLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFT 191
+ D + I G+++ G++DKK GS+ GL+H V G E L + K+
Sbjct: 599 ----SPKDNGMLIIDGQIIFGVVDKKTVGSSSGGLIHVVTREKGPEVCAKLFGNIQKVVN 654
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQ 251
+L GF++G+ D + ++ R+ T I A++ E A L + L+
Sbjct: 655 YWLLHNGFSIGIGDTIADEKTMREITDAIALAKKKVEEVTKEAQANLLTAKHGMT---LR 711
Query: 252 EAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVN 311
E+ F + R DK + +V L + NN++ MV +G+KGS +N
Sbjct: 712 ES------FEDNVVRYLNEARDKAGRSA-EVNLKD-------LNNVKQMVSAGSKGSFIN 757
Query: 312 TMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHC 371
Q+S +GQ +EGKR A + RTLP F + SP + GFV+ ++ G+ PQEFFFH
Sbjct: 758 IAQMSACVGQQSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHA 817
Query: 372 MAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVT 430
M GREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S ++IQ +YGEDG+D
Sbjct: 818 MGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGNIIQFVYGEDGMDAA 876
Score = 132 bits (332), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 128/449 (28%), Positives = 213/449 (47%), Gaps = 68/449 (15%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
L S+ +PGE VGVLAAQSIGEP+TQMTLNTFHFAG VT G+PRL+EIL +A K +K
Sbjct: 1054 LRSIVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVA-KNMK 1112
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNY------ 681
TPS+ + +L + +++ +L +S T L+ V + + P+P
Sbjct: 1113 TPSLTV-YLEESYATDQEKAKLIRSAIEHT---TLKSVTVASEIYYDPDPSSTVIEEDEE 1168
Query: 682 --QMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQ 739
Q+ F + + S+K + +L LE+ R A K++ + Q ++
Sbjct: 1169 IIQLHFSLMDEET---EASLK-------HQSPWLLRLEL---DRVAMTDKDLTMGQVGEK 1215
Query: 740 MEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERM 799
+++ ++D + V E+ E+ ++ + V + D E +E+ M
Sbjct: 1216 IKETFKND--------------LFVIWSEDNAEKLIIRC-RVVRDPKTLDAEAEAEEDHM 1260
Query: 800 SEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNL 859
++ E+ +I R V+D+ V YD+K +PS
Sbjct: 1261 LKKIENTMLESITLR-----------GVQDITR----VVMMKYDRK---------VPSET 1296
Query: 860 FE-EKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKN 918
E K + +L+TDG+N++ + +D ++Y N + + GIEA + +EV N
Sbjct: 1297 GEYHKIPEWVLETDGVNLSEVMSVPG-VDPTRIYTNSFIDIMNVLGIEAGRAALYKEVYN 1355
Query: 919 VFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASM 977
V A G V+ RH++L+ D MT G +++ R+G R + + + +FE +E + +A
Sbjct: 1356 VIASDGSYVNYRHMALLVDVMTSQGFLMSVTRHGFNRADTGALMRCSFEETVEILFEAGA 1415
Query: 978 QGREDSLRAPSARVMLGQECRQGTGLFQL 1006
D S V+LGQ GTG F +
Sbjct: 1416 AAELDDCSGVSENVILGQMAPIGTGSFDV 1444
>gi|33326219|gb|AAQ08519.1| RNA polymerase II largest subunit [Psilotum nudum]
Length = 1013
Score = 227 bits (578), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 146/418 (34%), Positives = 217/418 (51%), Gaps = 34/418 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ G++QD ++ K++ RDTF+ + +MN++ +
Sbjct: 433 RAEVLELMMVPKCIVSPQSNRPVIGIVQDTLLGCRKVTKRDTFIEKDVFMNIL---MWWE 489
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + + PTI KP PLWTGKQ+ S +I PK +IR S + G G
Sbjct: 490 DFDGKIPAPTILKPKPLWTGKQLFSLII----PKQINLIR----FSAWHLDSEVGEITPG 541
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
DT V I GEL+SG L KK G++ L+H +W+ G + A L L
Sbjct: 542 ------DTVVRIEKGELISGTLCKKTLGTSGGSLIHVIWEEVGPDAARKFLGHTQWLVNY 595
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L + GF++G+ D + K + I KA+ E A L+ +P
Sbjct: 596 WLLQHGFSIGIGDTIADAATMEKINESIAKAKNEVKELIKMAQEKQLEAEP--------- 646
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
++ F ++++ D ++ Q L E +NN++ MV +G+KGS +N
Sbjct: 647 GRTTMESFENRVNQVLNRARDDAGSSA-QRSLSE-------SNNVKAMVTAGSKGSFINI 698
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+ +GQ +EGKR RTLP F + P + GFV+ ++ G+ PQEFFFH M
Sbjct: 699 SQMIACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 758
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVT 430
GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +I+ LYGEDG+D
Sbjct: 759 GGREGLIDTAVKTSETGYIQRRLVKAMEDVMVKYDGTVRNSLGDVIEFLYGEDGMDAV 816
>gi|67476290|ref|XP_653748.1| DNA-directed RNA polymerase III largest subunit [Entamoeba
histolytica HM-1:IMSS]
gi|56470729|gb|EAL48362.1| DNA-directed RNA polymerase III largest subunit, putative [Entamoeba
histolytica HM-1:IMSS]
gi|449705808|gb|EMD45780.1| DNA-directed RNA polymerase III largest subunit, putative [Entamoeba
histolytica KU27]
Length = 1379
Score = 226 bits (577), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 189/625 (30%), Positives = 296/625 (47%), Gaps = 78/625 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM+ + P+ G + QD + + L+ +D + + M Q C
Sbjct: 532 RAECLMLMHSAKNLQTPRTGQMIIAETQDFLTTSYLLTSKDFVIEEEDMM----QWACWF 587
Query: 73 N---TEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGST 129
+ TEI P KP LWTGKQ+ + L P +H E ++ LD +
Sbjct: 588 HNAGTEIDLPTPAYLKPKKLWTGKQLYG---LALKPN-----KH-EGVNISLDVPSKLYS 638
Query: 130 QYGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAK 188
+ G V D + ++ +LLSG ++K GS + GL H + +G + +++ +++
Sbjct: 639 KEGKWMCVKDGWICFKNSQLLSGQIEKSIIGSGNKTGLFHLILRDYGTLESAKIMAHISR 698
Query: 189 LFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISS 248
+L GF++G+ D+ + + + +++++ + C+
Sbjct: 699 FCARFLGDYGFSIGISDVTPSADLTQMKEELVSEGYK-----KCD--------------- 738
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKVTNN-INQVCLPEG--LIEPFPANNLQF-MVESG 304
Q E Y S Q Q + L+ + NN ++Q+ G IE ++N M SG
Sbjct: 739 QFIEDYKSGKQ-EVQAGSTPEQTLEALLNNELSQIRERAGKRCIEELKSDNSPLVMALSG 797
Query: 305 AKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQP 364
+KGS +N Q+ +GQ + G R + R+LP F + +P+A GFV F TG+
Sbjct: 798 SKGSVINISQMIACVGQQTVNGGRVSDGFISRSLPHFALHSRTPQAKGFVKNSFFTGLNA 857
Query: 365 QEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGE 424
EFFFH M GREGL+D+AVKT+ +GY+QR L+K LE L VHYD TVR + L++I+ YG+
Sbjct: 858 TEFFFHTMGGREGLVDSAVKTAETGYMQRRLMKALEDLHVHYDGTVRSASLTVIEFKYGD 917
Query: 425 DGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFI 484
DGLD K + +DK LE V+ NL + + +F + N I
Sbjct: 918 DGLDPLKVE--SDKYPINLES---------VLSNLQQNQKPDDEYITPESFDK--EYNAI 964
Query: 485 FSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVV 544
S +TK +L +Q + K +K+ + H+ EN +
Sbjct: 965 IS--QTKIVSELWKQQIETFLKEKKEEMTEIY-------------NHYN--QENAQHGLC 1007
Query: 545 KYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRG 604
T + F + K L S+ G VG LA QS+GEPSTQM L TFHFAG
Sbjct: 1008 GIT-----IQTLKDFISICHEKGLRSVCEAGTPVGALAGQSMGEPSTQMVLKTFHFAGVA 1062
Query: 605 DMNVTLGIPRLREILMMATKAIKTP 629
MN+ LG+PR++EI+ A+K I+TP
Sbjct: 1063 SMNIALGVPRIKEII-NASKKIQTP 1086
Score = 77.4 bits (189), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N I + GIEAA II E+KNV YG+ +D RHL L++D MT G + + R GI
Sbjct: 1248 NHIAVVEKVLGIEAARSTIISEIKNVMDAYGLSIDVRHLLLLSDLMTFKGVILGITRYGI 1307
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
++ S +FE + + A++ R+D ++ S +++G + GTGL Q+
Sbjct: 1308 SKMKDSVFTFASFERTNDHLFDAAVHSRKDEIKGVSESIIVGNQVGLGTGLMQI 1361
>gi|397135824|gb|AFO11407.1| RNA polymerase I, partial [Cyniclomyces guttulatus]
Length = 871
Score = 226 bits (577), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 147/421 (34%), Positives = 219/421 (52%), Gaps = 45/421 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S L V Q + P+ P G++QD + L+L+DTF+ +N++YQ I
Sbjct: 311 RAELSQLCAVPLQIVSPQSNXPCMGIVQDTLCGIRILTLKDTFIEYDHALNMLYQ---IP 367
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + PP+I KP PLWTGKQ+LS I PK + R E G+T
Sbjct: 368 DWDGIVPPPSILKPKPLWTGKQLLSAAI----PKGIHLQRFXE-----------GTT--- 409
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ + D + I G+++ G++DKK GS+ GL+H V G L + K+
Sbjct: 410 -LLSPKDNGMLIIDGQIIXGVVDKKTVGSSNGGLIHVVTREKGPTTCARLFINIQKIVNF 468
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + E R+ T+ +A++ E +E
Sbjct: 469 WLLHNGFSVGIGDTIANGETIRQITETXAEAKKKVEEVT-------------------KE 509
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQF---MVESGAKGST 309
A A++ + + + +S D V +N+ G + N+ F MV +G+KGS
Sbjct: 510 AQANLLTAKHGMTLR-ESFEDNVVRYLNEARDKAGRLAEVNLNDTNFVKQMVSAGSKGSF 568
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+S +GQ +EGKR A RT P F + SP + GFV+ ++ G+ PQEFFF
Sbjct: 569 INIAQMSACVGQQSVEGKRIAFGXVDRTXPHFSKDDYSPESKGFVENSYLRGLTPQEFFF 628
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H M GREGLI TAVKT+ +GY+QR LVK LE + VHYD T R+S ++IQ LYGEDG+D
Sbjct: 629 HAMGGREGLIXTAVKTAETGYIQRRLVKALEDIMVHYDSTTRNSLGNIIQFLYGEDGIDA 688
Query: 430 T 430
+
Sbjct: 689 S 689
>gi|402468123|gb|EJW03320.1| hypothetical protein EDEG_02328 [Edhazardia aedis USNM 41457]
Length = 1776
Score = 226 bits (577), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 142/369 (38%), Positives = 198/369 (53%), Gaps = 42/369 (11%)
Query: 81 PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYGLVHAVWDT 140
PTI +P+ L+TGKQ++++++ +L + I H + DT
Sbjct: 810 PTILRPVILYTGKQIVTSILKSLN----ISIDHTS-------------------KSKTDT 846
Query: 141 H-VTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGF 199
V IR G LLSG +DK Q G T+ LVH +G LL+ + + R G+
Sbjct: 847 DPVIIRDGRLLSGTIDKSQIGPTKNSLVHVCGKKYGFSICNELLTSFGLVINKIMARQGY 906
Query: 200 TLGVRDILVRQERDRKR-------TKII-NKARRLGTEAACNALGLPLDTDPEIISSQLQ 251
+ D+L+ + +++R TK + N + G CN D E +S +
Sbjct: 907 GARISDLLLVESGNQQRGFLCKEGTKAVKNTLLQSGFIKKCNNNKGGSVNDKE--TSVID 964
Query: 252 EAYA-SIPQFRAQ------IDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESG 304
+Y+ S P F D K ++K T++I + E PFP NN M++SG
Sbjct: 965 HSYSLSDPYFFVDGKSLEYYDSLVKQTMNKTTSSIYDRTISENQYVPFPFNNYSLMIKSG 1024
Query: 305 AKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQP 364
AKGSTVN QIS LLGQ ELEGKR + SG TLP F +++P+ G++ GRF+ GI
Sbjct: 1025 AKGSTVNLGQISGLLGQQELEGKRVPYLSSGTTLPCFESTKIAPQINGYIFGRFLDGISV 1084
Query: 365 QEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGE 424
E+FFHCMAGREGLIDTAVKT+RSGYLQR L+K LEGL V YD +V + ++Q LYGE
Sbjct: 1085 AEYFFHCMAGREGLIDTAVKTARSGYLQRSLIKALEGLKVEYDYSVTNQG-DIVQFLYGE 1143
Query: 425 DGLDVTKRQ 433
D D +K +
Sbjct: 1144 DAFDTSKDE 1152
Score = 180 bits (456), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 149/489 (30%), Positives = 230/489 (47%), Gaps = 79/489 (16%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
++ PGE VG++AAQ +GEPSTQMTLNTFH AG G NVTLGIPRL EIL +A+K IKTP
Sbjct: 1295 NMVQPGEAVGIIAAQGVGEPSTQMTLNTFHLAGVGSKNVTLGIPRLAEILTIASKKIKTP 1354
Query: 630 SMEIPFLP------------DMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEP 677
+++ D ++K+ +L + RIT+ D+ K+ I+E +
Sbjct: 1355 YIKVDLSKPLKNKKQHDDDIDNNLIKKRGEQLVDMLKRITLKDITRKIYIEETGSL---- 1410
Query: 678 HMNYQMKFCFIPAHMYRDKTS--VKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQ 735
F + +Y DK + V K+I + L+ +V+I + N E
Sbjct: 1411 -------FSIV---IYLDKKTDVVTVKKLICRLIDRKLRSSKVSIGIEIIN--QPDNTEN 1458
Query: 736 SRDQMEDDVEDDEGEGAEGAGAALGRV------DVSSDEERDE----EDAVQSHK----- 780
S E+ E+D+ + + D+S ++E +E ED S +
Sbjct: 1459 SVKTHEEHSENDDSVDDSSDKDDINKKNRKNNNDISENDESEEIDSSEDGSDSEEYSTNK 1518
Query: 781 ----------KVNQEEDNDFEEPEDEERMSEREEDDNTSNIGERFKIEFRDSTNVFVKDV 830
+ EE ND S+ +++DN++N I ++TN++ D+
Sbjct: 1519 KKKSRKSSSISKDDEESNDSSNSNITSNTSKYDDNDNSTNT----IIHTENNTNLYTLDL 1574
Query: 831 -----VNQHNIVHKYSYDKKNHMWCKLLFLPSNL-------FEEKESKHLLKTDGINVNF 878
+ + + + D KN L L S L E + H + D I
Sbjct: 1575 SKENKEKKLKKIIRINLDTKNDKVLLLPILESILPNIVIKEVENIKGAHTQENDLIIEG- 1633
Query: 879 ISQYRHLL------DLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHL 932
SQ +L+ +L Y NDIH + + GIEA VI+ E+K VF YGI V+ RHL
Sbjct: 1634 -SQIENLVGILSNSELMNTYSNDIHNVNLSLGIEACRSVIVNEIKTVFNAYGITVNIRHL 1692
Query: 933 SLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVM 992
L+AD+MT G Y NR G+ + S +QKM+FE + I++ + +D+L+ PSA ++
Sbjct: 1693 LLIADFMTKEGIYKPFNRYGLAHSQSILQKMSFESAFKFIKEGVLFNEKDTLQTPSANII 1752
Query: 993 LGQECRQGT 1001
+G GT
Sbjct: 1753 VGNAVNLGT 1761
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
+H +AEA +M+ Y+ +G+P+ GL+QDHV+ A++ L++ F+ R EY++ Y +
Sbjct: 679 NHLARAEAYMVMSNDHNYVSNTNGNPVRGLVQDHVVVCARICLKEEFMQREEYIS--YVS 736
Query: 69 LCIL 72
C+L
Sbjct: 737 ACVL 740
>gi|83320430|gb|ABC02842.1| RNA polymerase II largest subunit, partial [Cladochytrium
replicatum]
Length = 981
Score = 226 bits (577), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 149/424 (35%), Positives = 221/424 (52%), Gaps = 37/424 (8%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
SH +AE L V Q + P+ +P+ G++QD + KL+ RD FLT M+L+
Sbjct: 399 SHETRAEIMELCMVPRQIVSPQKNAPVMGIVQDTLCGIRKLTRRDCFLT----MDLMKNI 454
Query: 69 LCILNTEIRTLP-PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
L + +P P I KP+PLWTGKQ +S V+ PK +I H + G
Sbjct: 455 LMWVPNWDGVVPMPAILKPVPLWTGKQAISLVL----PKVNMIGFHSQHPDG-------- 502
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
++ LV + DT V I GELL GIL K+ GS+ G++H + G E
Sbjct: 503 --EHTLV-SPGDTRVQIEEGELLMGILCKQTVGSSSGGIIHIAMNDLGHEQCKMFFEGAQ 559
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIIS 247
+ +L GF++G+ D + I A+ + A L P +
Sbjct: 560 AVVNYWLLHNGFSIGIGDTITDATTMDHVNLTIESAKLEVEKIIATAQAGTLQRKPGMT- 618
Query: 248 SQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKG 307
++E++ S+ + ++ R + + TN++ + NN + MV +G+KG
Sbjct: 619 --VRESFESLVNY--ELGRARERTGARSTNSLRE------------QNNFKQMVVAGSKG 662
Query: 308 STVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEF 367
S +N QI +GQ +EGKR GRTLP F + SP++ GFV+ ++ G+ PQEF
Sbjct: 663 SNINISQIMACVGQQNVEGKRIPFGFKGRTLPHFKKDDHSPQSRGFVENSYLRGLTPQEF 722
Query: 368 FFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL 427
FFH M GREGLIDTAVKT+ +GY+QR LVK LE L+V YD TVRD+ +++Q +YG+DG+
Sbjct: 723 FFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDLSVKYDSTVRDAVGNIVQFVYGDDGM 782
Query: 428 DVTK 431
D K
Sbjct: 783 DGAK 786
>gi|397135818|gb|AFO11404.1| RNA polymerase I, partial [Kuraishia capsulata]
Length = 870
Score = 226 bits (577), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 144/420 (34%), Positives = 221/420 (52%), Gaps = 43/420 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S + V Q + P+ P+ G++QD + K++LRD F+ + MN+++ I
Sbjct: 311 RAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDNFIEYDQVMNMLF---WIP 367
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR-HGELLSGILDKKQFGSTQY 131
+ P I KP PLW+GKQ+LST I PK + R G LLS
Sbjct: 368 QWDGVIPQPAILKPKPLWSGKQLLSTCI----PKGIYLQRFDGSLLSP------------ 411
Query: 132 GLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFT 191
D+ + I +GE++ G+++K G+T GL+H V G + L + K+
Sbjct: 412 ------KDSGMLIVNGEIMFGVVNKATVGATAGGLIHTVMREKGPQVCAQLFGNIQKVVN 465
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQ 251
+L GF++G+ D + +E R T+ I +A+ E N + LD ++
Sbjct: 466 YWLLHNGFSIGIGDAIADRETMRVITETIGEAK----EKVQNII---LDAQRNLLE---- 514
Query: 252 EAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVN 311
P+ + ++ + KV N + +NN++ MV +G+KGS +N
Sbjct: 515 ------PEPGMTVRESFEQKVSKVLNEARDSAGKSAELSLKDSNNVKQMVTAGSKGSYIN 568
Query: 312 TMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHC 371
Q+S +GQ +EGKR + + R+LP F + S + GFV+ ++ G+ PQEFFFH
Sbjct: 569 ISQMSACVGQQIVEGKRISFGFADRSLPHFTKDDYSAESKGFVENSYLRGLTPQEFFFHA 628
Query: 372 MAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTK 431
MAGREGLIDTAVKT+ +GY+QR L+K LE + VHYD T R+S +IQ LYGEDG+D T+
Sbjct: 629 MAGREGLIDTAVKTAETGYIQRRLLKALEDIMVHYDGTARNSLGDVIQFLYGEDGIDGTQ 688
>gi|302696011|ref|XP_003037684.1| hypothetical protein SCHCODRAFT_81059 [Schizophyllum commune H4-8]
gi|300111381|gb|EFJ02782.1| hypothetical protein SCHCODRAFT_81059 [Schizophyllum commune H4-8]
Length = 1750
Score = 226 bits (577), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 144/416 (34%), Positives = 221/416 (53%), Gaps = 39/416 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S + V Q + P+ P+ G++QD + K +LRD F+ + N++ L +
Sbjct: 501 RAELSQIAWVPRQIVTPQSNKPVMGIVQDTLCGIRKFTLRDCFMDWNQVQNIL---LWVP 557
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + P I KP PLWTGKQ+LS VI P+ I R E + GS
Sbjct: 558 SWDGSVPIPAILKPKPLWTGKQILSMVI----PRGINIARKSE---------KGGSAPPA 604
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
D + I +G+++ G++DKK G++Q GL+H V+ G E +L + L ++
Sbjct: 605 ------DDGMFIENGDIMYGVVDKKTVGASQGGLIHVVFREKGPEATRTLFTGLQQVVNY 658
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + + K TK I++ + E +A L P + +
Sbjct: 659 WLFHNGFSIGIGDTIAGPDVMAKITKTIDQQKEKVKELTADAYWDLLKPMPGMTIRET-- 716
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
F ++++ + D + +GL + NN++ MV +G+KGS +N
Sbjct: 717 -------FESKVNHELNKARDDAGKDAQ-----DGLKD---DNNVKQMVVAGSKGSFINI 761
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EGKR RTLP F + SP + GFV+ ++ G+ PQEFFFH M
Sbjct: 762 SQMSVCVGQQSVEGKRIPFGFRHRTLPHFTKDDYSPESRGFVENSYLRGLTPQEFFFHAM 821
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
+GREGLIDTAVKT+ +GY+QR LVK LE + V YD TVR+S L+Q +YGEDG+D
Sbjct: 822 SGREGLIDTAVKTAETGYIQRRLVKALEDVMVCYDGTVRNSLGDLVQFIYGEDGMD 877
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/98 (51%), Positives = 65/98 (66%), Gaps = 1/98 (1%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
SLANPGE G LAAQSIGEP+TQMTLNTFH+AG NVTLG+PRL+EI+ +A IKTP
Sbjct: 1069 SLANPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVAAN-IKTP 1127
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKI 667
+ I +P+ + A + + + T+ V V+I
Sbjct: 1128 AHTIYLVPEKAQSRLGAKAVQEQLAFTTLRTVTAAVEI 1165
Score = 73.2 bits (178), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 79/145 (54%), Gaps = 2/145 (1%)
Query: 863 KESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 922
+E + +L+T+G N+ + + D + N+ + +T GIEA + +++E+K+
Sbjct: 1320 QEKEWVLETNGTNLKAVMCVDGV-DYTRTSSNNCVEVFNTLGIEAGRQSVLKELKSCIEF 1378
Query: 923 YGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGRE 981
G V+ RH++L+ D MT GT +A+ R+GI R + + + +FE +E + +A+ G +
Sbjct: 1379 DGSYVNYRHIALLCDLMTQRGTLMAITRHGINRSDTGALMRCSFEETVEILMEAAAVGEK 1438
Query: 982 DSLRAPSARVMLGQECRQGTGLFQL 1006
D + VM GQ GTG F +
Sbjct: 1439 DDCHGVAENVMFGQMAPMGTGAFDV 1463
>gi|413915232|gb|AFW21478.1| RNA polymerase II largest subunit [Neotyphodium gansuense]
Length = 1761
Score = 226 bits (577), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 152/424 (35%), Positives = 218/424 (51%), Gaps = 49/424 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + + P+ PL G++QD + K+ RDTF+ + MN++ L +
Sbjct: 510 RAEVKELCLVPNNIVSPQKNGPLMGVVQDSLAGAYKICRRDTFIDKEMVMNMM---LWVP 566
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N + P I KP P WTGKQ++S VI PK+ I H SG D
Sbjct: 567 NWDGVIPQPAILKPRPRWTGKQLISMVI----PKE--ISLHSPESSGGQDNADI------ 614
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ DT + I+ GELL G+L KK GS G+VH ++ G + A++ L+ + ++ T
Sbjct: 615 ---PLKDTGLLIQSGELLYGLLKKKNIGSAAGGIVHLSYNELGPDGAMAFLNGVQQVVTY 671
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKAR----RLGTEAACNALGLPLDTDPEIISS 248
+L G ++G+ D + ++ K I+ + RL +A N L
Sbjct: 672 WLLNNGHSIGIGDTVPDKQTIEKVQVHIDTQKAEVARLTAQATANEL------------- 718
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKV---TNNINQVCLPEGLIEPFPANNLQFMVESGA 305
EA + RA + + L+ Q L + +NN M +SG+
Sbjct: 719 ---EALPGM-NVRATFENKVSMALNSARDQAGTTTQRSLKD-------SNNAVTMADSGS 767
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS++N Q++ L+GQ +EGKR RTLP F + SP A GFV+ ++ G+ P
Sbjct: 768 KGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPT 827
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EFFFH MAGREGLIDTAVKT+ +GY+QR LVK LE L+ YD TVR+S +IQ LYGED
Sbjct: 828 EFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDIIQFLYGED 887
Query: 426 GLDV 429
GLD
Sbjct: 888 GLDA 891
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/64 (73%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
S +PGE VGVLAAQSIGEP+TQMTLNTFHFAG NVTLG+PRL+EIL +A K IKTP
Sbjct: 1073 SFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLA-KDIKTP 1131
Query: 630 SMEI 633
SM +
Sbjct: 1132 SMAV 1135
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 70/122 (57%), Gaps = 1/122 (0%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D + Y ND+ + +GIEAA +++E+ NV A G V+ RH++L+ D MT+ GT
Sbjct: 1346 VDPTRTYTNDLWQVVEVFGIEAARSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGTI 1405
Query: 946 VAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
A+ R+GI R + + + +FE +E + +A+ G D R S VMLGQ GTG F
Sbjct: 1406 SAVTRHGINRADTGALMRCSFEETVEILLEAAASGELDDCRGISENVMLGQLAPMGTGNF 1465
Query: 1005 QL 1006
+
Sbjct: 1466 DV 1467
>gi|403346305|gb|EJY72545.1| hypothetical protein OXYTRI_06457 [Oxytricha trifallax]
Length = 1886
Score = 226 bits (577), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 150/424 (35%), Positives = 219/424 (51%), Gaps = 52/424 (12%)
Query: 14 AEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCILN 73
AE +M V +Q + P+ P+ G++QD ++ + +D F+ R MNL+ + +
Sbjct: 493 AEVKEIMAVPNQIISPQSNKPVMGIVQDSLLGIMLFTRKDNFIDRNTAMNLM---MWLGK 549
Query: 74 TEIRTLP-PTIWKPMPLWTGKQVLSTVI--INLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ LP P + KP PLWTGKQ+LS VI +NLT + E ++ + TQ
Sbjct: 550 YSDKVLPTPAVLKPKPLWTGKQILSLVIPDVNLT-------KFFEAPPKPPQRRNWCPTQ 602
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLF 190
+T V I+ G+L++G L+K GS+ GL+H +W G + A LS +
Sbjct: 603 --------ETIVLIQRGQLITGHLNKATAGSSSQGLIHIIWKECGPDGAKQFLSNAQNVV 654
Query: 191 TVYLQRVGFTLGVRDILVRQER----DRKRTKIINKARRLGTEAACNALGLPLDTDPEII 246
+L GFT+GV+D + ++ +K NK RL +A L T P
Sbjct: 655 NQWLIEHGFTVGVQDTIASKKTMDGIHQKLQHYNNKVARLIQKAEQGKL----TTQP--- 707
Query: 247 SSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLI---EPFPANNLQFMVES 303
+ E++ + V NN+NQ G + + P N +Q MV +
Sbjct: 708 GKNMMESFEYL-----------------VNNNLNQARDEAGQLAFKDLDPWNKIQNMVGA 750
Query: 304 GAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQ 363
G+KG+ +N QI +GQ +EGKR RTLP F ++ P + GFV +++G+
Sbjct: 751 GSKGTNINISQIMGCVGQQNVEGKRVQFGFKSRTLPHFPKHDYGPASKGFVINNYISGLD 810
Query: 364 PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYG 423
P EFFFH M GREGLIDTAVKTS +GY+QR LVK LE + V YD TVR+S +IQ LYG
Sbjct: 811 PPEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKALEDIMVKYDGTVRNSGEQVIQFLYG 870
Query: 424 EDGL 427
EDG+
Sbjct: 871 EDGI 874
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 62/98 (63%), Gaps = 1/98 (1%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
SL +PGE VG +AA S+GEP+TQMTLNTFHFAG NVTLG+PRL+E++ + +K I TP
Sbjct: 1069 SLVHPGEMVGSIAAHSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEVINV-SKNISTP 1127
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKI 667
+ I K EK ++ + ++ ++E I
Sbjct: 1128 MVSIYLQGQHKKNEKTVMQIQGLIEHTNLSHLVESTGI 1165
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 84/156 (53%), Gaps = 2/156 (1%)
Query: 857 SNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREV 916
+ +F++ +L+TDG+ + I ++ D K NDI + + GIEA +I E+
Sbjct: 1311 TGVFKQTSDNFMLETDGVALQKILSVNNV-DYKKTVSNDILEILNVLGIEAVRMSLINEL 1369
Query: 917 KNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQA 975
+ V YGI V+ RHLS + D M G A+ R+GI R++ ++K +FE +E + +A
Sbjct: 1370 RAVLNFYGIYVNYRHLSTLCDVMCQRGKLTAITRHGINRMDSGPLRKASFEETVEILLEA 1429
Query: 976 SMQGREDSLRAPSARVMLGQECRQGTGLFQLRNREK 1011
++ D L+ + +MLGQ GTG F + EK
Sbjct: 1430 AVYNETDHLKGVTEAIMLGQLAPLGTGSFDVVLDEK 1465
>gi|397135800|gb|AFO11395.1| RNA polymerase I, partial [Barnettozyma populi]
Length = 871
Score = 226 bits (576), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 147/413 (35%), Positives = 222/413 (53%), Gaps = 42/413 (10%)
Query: 19 LMNVSS---QYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCILNTE 75
LMN+++ Q + P+ P G++QD + K++LRD+F+ + MN++Y I +
Sbjct: 314 LMNIAAVPLQIVSPQSNKPCMGIVQDTLCGVRKMTLRDSFIEYDQMMNILY---WIPEWD 370
Query: 76 IRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYGLVH 135
P I KP PLW+GKQ++S I PK + R E G+T +
Sbjct: 371 GVIPQPAILKPKPLWSGKQMMSMTI----PKGINLQRFDE-----------GTT----LL 411
Query: 136 AVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQ 195
+ D + + +GE++ G++DKK G+T GL+H V G+ L + K+ +L
Sbjct: 412 SPNDNGMLVINGEIMFGVVDKKTVGATNGGLIHTVMREKGSRQCADLFGSIQKVVNFWLL 471
Query: 196 RVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQEAYA 255
GF++G+ D + E ++ T+ I A+ E A L + L+E+
Sbjct: 472 HNGFSIGIGDTIADTETMKEITEAIAIAKEKVEEVTDEAQQNKLTAKHGMT---LRES-- 526
Query: 256 SIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQI 315
F + R DK + +V L +GL NN++ MV +G+KGS +N Q+
Sbjct: 527 ----FEDNVIRYLNEARDKAGRSA-EVNL-KGL------NNVKQMVSAGSKGSFINIAQM 574
Query: 316 SCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGR 375
S +GQ +EGKR A RTLP F + SP++ GFV+ ++ G+ PQEF+FH M GR
Sbjct: 575 SACVGQQSVEGKRIAFGFGDRTLPHFAKDDYSPQSKGFVENSYLRGLTPQEFYFHAMGGR 634
Query: 376 EGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
EGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S ++IQ +YGEDGLD
Sbjct: 635 EGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGNIIQFIYGEDGLD 687
>gi|254583772|ref|XP_002497454.1| ZYRO0F05918p [Zygosaccharomyces rouxii]
gi|238940347|emb|CAR28521.1| ZYRO0F05918p [Zygosaccharomyces rouxii]
Length = 1744
Score = 226 bits (576), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 144/421 (34%), Positives = 219/421 (52%), Gaps = 45/421 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S L V Q + P+ P G++QD + KL+LRD F+ + +N++Y +
Sbjct: 498 RAELSQLCAVPQQIVSPQSNKPCMGVVQDTLCGIRKLTLRDNFIELGQVLNMLY---WVP 554
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + P I KP PLWTGKQ+LS I PK + R E G+T
Sbjct: 555 DWDGVIPTPAILKPKPLWTGKQLLSVAI----PKGIHLQRFDE-----------GTT--- 596
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ + D + + G+++ G++DKK GS+ GL+H V G + +L S + K+
Sbjct: 597 -LLSPKDNGMLVIDGQIIFGVVDKKTVGSSSGGLIHVVTREKGPQVCATLFSNIQKVVNY 655
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+ GF+ G+ D + + R+ T+ I +A+ + +E
Sbjct: 656 WFLHCGFSTGIGDTIADGQTMRQITEAIAEAKVK-------------------VEDVTKE 696
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQF---MVESGAKGST 309
A A++ + + + +S D V +N+ G + N+ F MV +G+KGS
Sbjct: 697 AQANLLTAKHGMTLR-ESFEDNVVRYLNEARDKAGRLAEVNLNDTNFVKQMVSAGSKGSF 755
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+S +GQ +EGKR A RTLP F + SP + GFV+ ++ G+ PQEFFF
Sbjct: 756 INIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFF 815
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H M GREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S ++IQ +YGEDG+D
Sbjct: 816 HAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGNIIQFIYGEDGMDA 875
Query: 430 T 430
Sbjct: 876 A 876
Score = 149 bits (375), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 134/449 (29%), Positives = 213/449 (47%), Gaps = 69/449 (15%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
L S+ +PGE VGVLAAQSIGEP+TQMTLNTFHFAG VT G+PRL+EIL +A K +K
Sbjct: 1054 LRSVVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVA-KNMK 1112
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMN------- 680
TPS+ PD ++KA +L +S+ T L+ V + + P+P
Sbjct: 1113 TPSLTAYLEPDYAADQEKA-KLIRSVIEHT---TLKSVTVASEIYYDPDPRSTAIPEDEE 1168
Query: 681 -YQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQ 739
Q+ F + + P +L LE+ RAA K++ + Q ++
Sbjct: 1169 IIQLHFSLLDDETEKSLAQQSP----------WLLRLEL---DRAAMNDKDLTMGQVGEK 1215
Query: 740 MEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERM 799
+++ ++D + V E+ E+ ++ +V + + D E +E+ M
Sbjct: 1216 IKETFKND--------------LFVIWSEDNAEQLIIRC--RVVRPKSMDLETEAEEDHM 1259
Query: 800 SEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNL 859
+ KIE N+ ++ V N +V YD+K +PS
Sbjct: 1260 LK--------------KIENTMLENITLRGVENIERVVM-MKYDRK---------VPSET 1295
Query: 860 FE-EKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKN 918
E +K + +L+TDG+N++ + +D +++Y N + GIEA + +EV N
Sbjct: 1296 GEYQKIPEWVLETDGVNLSEVMTVPG-VDASRIYTNSFIDIMEVLGIEAGRAALYKEVFN 1354
Query: 919 VFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASM 977
V A G V+ RH++L+ D MT G ++ R+G R N + + +FE +E + +A
Sbjct: 1355 VIASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGA 1414
Query: 978 QGREDSLRAPSARVMLGQECRQGTGLFQL 1006
D R S V+LGQ GTG F +
Sbjct: 1415 SAELDDCRGVSENVILGQMAPIGTGAFDV 1443
>gi|3169691|gb|AAC17924.1| RNA polymerase II largest subunit, partial [Pyropia yezoensis]
Length = 1685
Score = 226 bits (576), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 144/420 (34%), Positives = 216/420 (51%), Gaps = 35/420 (8%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
+H +AE LM V + P+ P+ G++QD ++ + RDTFL R M+L+
Sbjct: 420 THATRAEVMELMMVPRCIVSPQGNKPVMGIVQDTLLGCMLFTYRDTFLRRDVTMSLL--- 476
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGS 128
L + + PP I KP PLWTGKQ+ S ++ D ++R+ S
Sbjct: 477 LHVEGWDGVIPPPAIIKPEPLWTGKQLFSLLL-----PDVNLVRYCNT------HPDDES 525
Query: 129 TQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAK 188
T + DT V I GEL++GI+DK+ GS GL+H W G E L+S +
Sbjct: 526 TDI----SPGDTRVLIVGGELITGIVDKRTVGSAANGLIHVTWKEKGPERTCVLISAIQV 581
Query: 189 LFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISS 248
L Y+ G ++G+ D + D I A+ T+ +
Sbjct: 582 LVNHYVIMRGQSIGIGDTIADAHTDANVRATITGAQAEVTQ----------------LER 625
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGS 308
+ QE ++ ++ ++ ++ ++KV N + +NN++ MV +G+KGS
Sbjct: 626 RAQEGELTLLPGKSMME-SFEVEVNKVLNGARDTSGSSAQLSLLKSNNIKRMVSAGSKGS 684
Query: 309 TVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFF 368
+N QI +GQ +EGKR + RTLP F ++ P + GFV+ ++ G++P EFF
Sbjct: 685 FINISQICACVGQQNVEGKRISYGFRRRTLPHFRMDDLGPESRGFVENSYLIGLRPSEFF 744
Query: 369 FHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
FH M GREGLIDTAVKT+ +GY+QR LVK +E + V YD TVR+S S+IQ LYGEDGLD
Sbjct: 745 FHAMGGREGLIDTAVKTAETGYIQRRLVKAMEDVMVKYDGTVRNSRSSVIQFLYGEDGLD 804
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 83/146 (56%), Gaps = 4/146 (2%)
Query: 863 KESKHLLKTDGINVNFISQYRHL-LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 921
KE++ LL+TDG VNFI+ H +D + NDI GIEA ++ E++ V +
Sbjct: 1282 KENEWLLETDG--VNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVIS 1339
Query: 922 VYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGR 980
G V+ RHLS++ D MT G +A++R+GI R++ S + K +FE + + A+M G
Sbjct: 1340 FDGAYVNYRHLSVLVDVMTFRGHLMAISRHGINRVSSSALMKCSFEETSDILLDAAMHGE 1399
Query: 981 EDSLRAPSARVMLGQECRQGTGLFQL 1006
D+L S +MLGQ GTG F L
Sbjct: 1400 TDTLTGVSESIMLGQLAPLGTGSFGL 1425
Score = 80.9 bits (198), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 62/98 (63%), Gaps = 1/98 (1%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
+LA GE VG AAQSIGEP+TQMTLNTFH+AG NVTLG+PRL+EI+ + +K KTP
Sbjct: 1018 ALAPAGEMVGATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINV-SKRTKTP 1076
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKI 667
S+ + D ++A ++ + T+ V ++
Sbjct: 1077 SLVVYLRGDAVHDAERAKQVQAELQHTTLRHVTHMTEV 1114
>gi|358390960|gb|EHK40365.1| hypothetical protein TRIATDRAFT_89498 [Trichoderma atroviride IMI
206040]
Length = 1756
Score = 226 bits (576), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 151/428 (35%), Positives = 220/428 (51%), Gaps = 54/428 (12%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S +AE L V + + P+ PL G++QD + K+ RDTFL + + MNL+
Sbjct: 508 SEETRAEVKELCLVPNNIVSPQKNGPLMGIVQDSLAGAYKICRRDTFLDKNQVMNLM--- 564
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGS 128
L + N + P I KP P WTGKQ++S VI PK+ L+ DK
Sbjct: 565 LWVPNWDGIIPQPAILKPRPRWTGKQIISMVI----PKEIS-------LNAPEDKAD--- 610
Query: 129 TQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAK 188
+ + DT + I+ GEL+ G++ KK GS G++H ++ G E A++ L+ + +
Sbjct: 611 ------NPLNDTGLLIQAGELMYGLMKKKSIGSASGGVIHLCYNELGPEGAMAFLNGVQQ 664
Query: 189 LFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKAR----RLGTEAACNALGLPLDTDPE 244
+ +L + G ++G+ D + ++ K I+ + RL +A N L
Sbjct: 665 VTAYWLLQEGHSIGIGDTIPDKQTIEKVQAHIDTQKAEVARLTAQATANEL--------- 715
Query: 245 IISSQLQEAYASIPQFRAQIDRQYKSLLDKV---TNNINQVCLPEGLIEPFPANNLQFMV 301
EA + RA + + L++ Q L + +NN M
Sbjct: 716 -------EALPGM-NVRATFENKVSMALNQARDQAGTTTQKSLKD-------SNNAVTMA 760
Query: 302 ESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTG 361
ESG+KGS++N Q++ L+GQ +EGKR RTLP F + SP A GFV+ ++ G
Sbjct: 761 ESGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRG 820
Query: 362 IQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVL 421
+ P EFFFH MAGREGLIDTAVKT+ +GY+QR LVK LE L YD TVR+S +IQ L
Sbjct: 821 LTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLNAQYDGTVRNSLGDIIQFL 880
Query: 422 YGEDGLDV 429
YGEDGLD
Sbjct: 881 YGEDGLDA 888
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/88 (59%), Positives = 64/88 (72%), Gaps = 3/88 (3%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
S NPGE VGVLAAQSIGEP+TQMTLNTFHFAG NVTLG+PRL+EIL +A K IKTP
Sbjct: 1070 SFVNPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLA-KNIKTP 1128
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRIT 657
M + +L D P +++ + +S+ T
Sbjct: 1129 GMAV-YL-DTPLAKQEQAKKLRSLVEYT 1154
Score = 78.2 bits (191), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 68/122 (55%), Gaps = 1/122 (0%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D + Y ND+ + +GIE A +++E+ V A G V+ RH++L+ D MT+ G+
Sbjct: 1343 VDPIRTYTNDLWQVVEVFGIEGARAALVKELTAVLAFDGSYVNHRHIALLCDVMTYRGSI 1402
Query: 946 VAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
A+ R+GI R + + + +FE +E + +A+ G D R S VMLGQ GTG F
Sbjct: 1403 SAVTRHGINRADTGALMRCSFEETVEILLEAAATGELDDCRGISENVMLGQMAPMGTGHF 1462
Query: 1005 QL 1006
+
Sbjct: 1463 DV 1464
>gi|120561233|gb|ABM27002.1| RNA polymerase II largest subunit, partial [Entophlyctis
confervae-glomeratae]
Length = 1013
Score = 226 bits (576), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 145/432 (33%), Positives = 222/432 (51%), Gaps = 41/432 (9%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S+ KAE L V Q + P+ +P+ G++QD + K + RDTFL + MNL+
Sbjct: 421 SYETKAELMELCMVPKQIVSPQKNAPIMGIVQDTLCGIRKFTKRDTFLRQDLVMNLL--- 477
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVI---INLTPKDKVIIRHGELLSGILDKKQ 125
+ + + + P I KP+PLWTGKQ++S ++ IN+T ++
Sbjct: 478 MWVPDWDGTIPQPAIIKPVPLWTGKQIVSLILPAKINVTGMHTAYVQ------------- 524
Query: 126 FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSC 185
T + D V I +GELLSGILDK GS+ G++H + +G + A + +
Sbjct: 525 ---TPSNPEPDIPDCKVLIENGELLSGILDKSMVGSSSGGVIHVAMNEYGPDVAKAFFNG 581
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEI 245
+ +L + GF++G+ D + +E ++ I K++ A C+ EI
Sbjct: 582 CQTVVNYWLLQHGFSIGIGDTIADKETTQQINDAIAKSK-----AKCS----------EI 626
Query: 246 ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGA 305
I + +P + ++S + K N + NN++ MV +G+
Sbjct: 627 IKAAQNGTLEGMPGL--SVRETFESYITKELNTARDGAGKSAQMTLKEFNNVKQMVVAGS 684
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS +N Q+S +GQ +EG R R+LP F + +P A GFV+ ++ G+ PQ
Sbjct: 685 KGSYINVAQMSACVGQQNVEGSRIPFGFKYRSLPHFTKDDHTPEARGFVENSYLRGLTPQ 744
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EFFFH M GREGLIDTAVKT+ +GY+QR LVK LE L YD TVR++ ++Q YGED
Sbjct: 745 EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDLMAQYDGTVRNALGEIVQFCYGED 804
Query: 426 GLDVTK--RQYL 435
G+D K RQ+L
Sbjct: 805 GMDGAKVERQHL 816
>gi|397135967|gb|AFO11478.1| RNA polymerase I, partial [Dipodascopsis anomala]
Length = 872
Score = 226 bits (576), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 140/418 (33%), Positives = 219/418 (52%), Gaps = 39/418 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V Q + P+ P+ G++QD + K++ RD+FL+ + MN+++ +
Sbjct: 311 RAELRMLCAVPLQIVSPQSNKPVMGIVQDSLCGVRKMTKRDSFLSYDQVMNILF---WVP 367
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N + P I KP WTGKQ++S VI PK ++ ++F
Sbjct: 368 NWDGVIPQPAILKPKAYWTGKQMMSMVI----PKG-------------INMQRFDDKNTL 410
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
L +V D + I +GE++ G++DKK G+T GL+H + G + + +
Sbjct: 411 L--SVRDNGMMIENGEIMYGVVDKKTVGATSGGLIHTIMRDKGPVPTRDFIGGVQTVVNY 468
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + + R T I++A++ + +A L +P + L+E
Sbjct: 469 WLLHNGFSIGIGDTIADAKTMRNITNTISQAKKEVQQLILDAQANVLPAEPGMT---LRE 525
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
++ + + KV N ANN++ MV +G+KGS +N
Sbjct: 526 SF--------------EQKVSKVLNQARDTAGRSAETSLTDANNVKQMVVAGSKGSFINI 571
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EGKR S RTLP F + SP + GF++ ++ G+ PQEFFFH M
Sbjct: 572 SQMSACVGQQIVEGKRIPFGFSYRTLPHFTKDDYSPESRGFIENSYLRGLTPQEFFFHAM 631
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVT 430
AGREG+IDTAVKT+ +GY+QR LVK LE + V YD TVR+S ++Q +YGEDGLD T
Sbjct: 632 AGREGIIDTAVKTAETGYIQRRLVKALEDVMVKYDATVRNSLGDVVQFVYGEDGLDAT 689
>gi|397135844|gb|AFO11417.1| RNA polymerase I, partial [Lachancea thermotolerans]
Length = 871
Score = 226 bits (576), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 150/419 (35%), Positives = 222/419 (52%), Gaps = 41/419 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S L V Q + + P G++QD + K++LRDTF+ + +N++Y I
Sbjct: 311 RAELSQLCAVPQQIVSAQSNKPCMGIVQDTLCGVRKMTLRDTFIELDQVLNMLY---WIP 367
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGI-LDKKQFGSTQY 131
+ + P I KP PLW+GKQ+LS I SGI L + G+T
Sbjct: 368 DWDGVIPTPIILKPKPLWSGKQILSIAI----------------PSGIHLQRFDEGTT-- 409
Query: 132 GLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFT 191
+ + D + I G+++ G++DKK GS+ GL+H V G + L S L K+
Sbjct: 410 --LLSPKDNGMLIIDGQIIFGVVDKKTVGSSSGGLIHVVTREKGPKICARLFSNLQKVVN 467
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQ 251
+L GF++G+ D + ++ R+ T+ I A+R E A L + L+
Sbjct: 468 FWLLHNGFSIGIGDTIADEKSMREITEAIIVAKRKVEEVTKEAQANLLTAKHGMT---LR 524
Query: 252 EAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVN 311
E+ F + R DK + +V L + NN++ MV +G+KGS +N
Sbjct: 525 ES------FEDSVVRYLNEARDKAGRSA-EVNLKD-------LNNVKQMVSAGSKGSFIN 570
Query: 312 TMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHC 371
Q+S +GQ +EGKR A + RTLP F + SP + GFV+ ++ G+ PQEFFFH
Sbjct: 571 IAQMSACVGQQSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHA 630
Query: 372 MAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVT 430
M GREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S ++IQ +YGEDG+D
Sbjct: 631 MGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGNVIQFIYGEDGMDAA 689
>gi|222629113|gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japonica Group]
Length = 1321
Score = 226 bits (576), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 198/679 (29%), Positives = 301/679 (44%), Gaps = 116/679 (17%)
Query: 75 EIRTLPPTIWKPMPLWTGKQVLST---------VIINLTPKDKVIIRHGELLSGILDKKQ 125
E RT + P+ LWTGKQ+ S V +NLT K+K+ K
Sbjct: 503 EARTEALMLMGPIELWTGKQLFSVLVRPNACTKVFLNLTVKEKIY------------KTP 550
Query: 126 FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLS 184
GST D V R+ ELLSG + K G+ + G+ + + + A S ++
Sbjct: 551 KGSTLEPEAMCPNDGFVYFRNSELLSGQVGKATLGNGNKDGMFSTLVRDYNSHAAASCMN 610
Query: 185 CLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPE 244
LAK ++ GF++GV D+ + ++++ I+ G C+ +
Sbjct: 611 RLAKFSARFIGNHGFSIGVDDVQPGEHLNQEKKMKID-----GGYKDCH----------D 655
Query: 245 IISSQLQEAYASIPQFRAQ--IDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQF--- 299
+I+S + A P A +++ +L+++ +VC+ N L +
Sbjct: 656 LIASYSKGALRLQPGCNAAQTLEQSITRVLNEIREEAGKVCM----------NTLHWRNS 705
Query: 300 ---MVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDG 356
M + G+KGS +N Q+ +GQ + G+R RTLP F +P A GFV
Sbjct: 706 PLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRTLPHFPINSKTPAAKGFVAN 765
Query: 357 RFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLS 416
F TG+ EFFFH M GREGL+DTAVKT+ +GY+ R L+K LE L+V YD TVR++
Sbjct: 766 SFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASGG 825
Query: 417 LIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFK 476
++Q LYG+DG+D K + K PL+L L +
Sbjct: 826 IVQFLYGDDGMDPAKMEGKDGK-------------------------PLNLDQLFMKVMA 860
Query: 477 SSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQP---LISTFQPDA--- 530
+ P R + T+ E L+DK + C + L++ F D
Sbjct: 861 T--------CPQRGQNTLSPGEILQILNDKLSEHDASSDDGCSEKFKQLLTYFLEDRIKL 912
Query: 531 -------------HFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGEN 577
H G + +S+ G + F D + L G +
Sbjct: 913 LKSTRRALLLDEDHVGERHSSFEESIAANISG-ISVKQLQVFLDTCLSRYHLKKIEAGAS 971
Query: 578 VGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLP 637
+G + AQSIGEP TQMTL TFHFAG MNVTLG+PR++EI+ A K I TP + L
Sbjct: 972 IGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII-NAAKKISTPIITAELLS 1030
Query: 638 DMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCFIPA-HMYRDK 696
+ L A + SM + + +V E +KI + S +P++ ++ I A HM
Sbjct: 1031 EKDVLS--ARIVKGSMEKAVLGEVAEAIKI---VLKSSQPNLVVKLDMQRIEALHMGISA 1085
Query: 697 TSVKPSKIIDHFERKFLKE 715
SV+ S I++H + K E
Sbjct: 1086 DSVQLS-ILNHPKIKLKSE 1103
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 80/150 (53%), Gaps = 2/150 (1%)
Query: 861 EEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 920
EE + ++ L +G N+ + + D K N I + T GIEAA R II E++
Sbjct: 1157 EENDKRYKLLVEGTNLLAVMGTPGV-DAMKTKSNHIMEVNRTLGIEAARRSIIDEIQYTM 1215
Query: 921 AVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQG 979
+G+ +D RH+ L+AD MT+ G + + R GI ++ S + +FE E + AS G
Sbjct: 1216 KSHGMNIDSRHMMLLADLMTYKGEILGITRYGIAKMKSSVLMLASFEKTAEHLFNASYSG 1275
Query: 980 REDSLRAPSARVMLGQECRQGTGLFQLRNR 1009
RED + S +++G + GTG+ ++R R
Sbjct: 1276 REDQIEGVSECIIMGIPMQLGTGILKVRQR 1305
>gi|397135842|gb|AFO11416.1| RNA polymerase I, partial [Vanderwaltozyma polyspora]
Length = 871
Score = 226 bits (576), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 144/421 (34%), Positives = 221/421 (52%), Gaps = 45/421 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S L V Q + P+ P G++QD + KL+LRD+F+ + +N++Y +
Sbjct: 311 RAELSQLCAVPMQIVSPQSNKPCMGIVQDTLCGIRKLTLRDSFIEFDQVLNMLY---WVP 367
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + P I KP PLWTGKQ+LS I PK + R E G+T
Sbjct: 368 DWDGVIPQPAILKPKPLWTGKQILSIAI----PKGIHLQRFDE-----------GTTML- 411
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ D + + G+++ G++DKK GS+ GL+H V G + + + K+
Sbjct: 412 ---SPKDNGMLVIDGQIVFGVVDKKTVGSSSGGLIHVVTREKGPQVCAKMFGNIQKVVNF 468
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF+ G+ D + E ++ T+ I +A++ E +E
Sbjct: 469 WLLHNGFSTGIGDTIADGETMKEITETIAEAKKKVEEVT-------------------KE 509
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPF---PANNLQFMVESGAKGST 309
A A++ + + + +S D V +N+ G + NN++ MV +G+KGS
Sbjct: 510 AQANLLTAKHGMTLR-ESFEDNVVRFLNEARDKAGRLAEVNLNDTNNVKQMVSAGSKGSF 568
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+S +GQ +EGKR A RTLP F + SP + GFV+ ++ G+ PQEFFF
Sbjct: 569 INIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFF 628
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H M GREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S ++IQ +YGEDG+D
Sbjct: 629 HAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDSTTRNSLGNVIQFVYGEDGIDA 688
Query: 430 T 430
+
Sbjct: 689 S 689
>gi|326498629|dbj|BAK02300.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1859
Score = 226 bits (576), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 143/420 (34%), Positives = 215/420 (51%), Gaps = 40/420 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ G++QD ++ K++ RDT + + +MN++ +
Sbjct: 511 RAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNIL---MWWE 567
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + + P I +P P+WTGKQV + +I L + H E SG +
Sbjct: 568 DFDGKVPAPAILRPRPIWTGKQVFNLIIPKLINLIRFSAWHAETESGFITPG-------- 619
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
DT V I GELLSG L KK G++ L+H +W+ G + A L L
Sbjct: 620 ------DTMVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNY 673
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L + GF++G+ D + K + I A+ E A L+ +P + E
Sbjct: 674 WLLQNGFSIGIGDTIADAATMEKINETIGTAKNEVKELIKQAQEKNLEPEP---GRTMME 730
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNIN---QVCLPEGLIEPFPANNLQFMVESGAKGST 309
++ + + +L+K ++ Q L E +NNL+ MV +G+KGS
Sbjct: 731 SF----------ENRVNQVLNKARDDAGSSAQKSLSE-------SNNLKAMVTAGSKGSF 773
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q++ +GQ +EGKR RTLP F + P + GFV+ ++ G+ PQEFFF
Sbjct: 774 INISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 833
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H M GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +IQ LYGEDG+D
Sbjct: 834 HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDA 893
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 124/445 (27%), Positives = 210/445 (47%), Gaps = 68/445 (15%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
L SL PGE +G +AAQSIGEP+TQMTLNTFH+AG NVTLG+PRLREI+ +A K IK
Sbjct: 1073 LQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA-KKIK 1131
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISP-----EPHMNYQ 682
TPS+ + P++ K ++ A + ++ T+ V +I W + P E + +
Sbjct: 1132 TPSLSVFLKPEVSKKKELAKNVQCALEYTTLRSVTHATEI--WYDPDPLGTIIEEDVEFV 1189
Query: 683 MKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMED 742
+ +P D + P + R+ + + ++++A A E+ + +D
Sbjct: 1190 RSYYEMPDEDI-DPDKISPWLLRIELNREMMVDKKLSMADIA---------EKINHEFDD 1239
Query: 743 DVE----DDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEER 798
D+ DD A + RV +++DE A + + ED+ F +
Sbjct: 1240 DLSCIFNDD------NADKLILRVRITNDE------APKGEIQDESAEDDVFLK------ 1281
Query: 799 MSEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSN 858
KIE T + ++ + + + + KY K N F P N
Sbjct: 1282 -----------------KIEGNMLTEMALRGIPDINKVFIKYG--KVNKFDESEGFKPDN 1322
Query: 859 LFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKN 918
+ +L T+G+N+ + + +D + N + + GIEA R ++ E++
Sbjct: 1323 EW-------MLDTEGVNLLAVMCHED-VDSTRTTSNHLIEVIEVLGIEAVRRSLLDELRV 1374
Query: 919 VFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSF-IQKMTFEMPLEKIRQASM 977
V + G V+ RHL+++ D MT+ G +A+ R+GI N + + + +FE ++ + A++
Sbjct: 1375 VISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAV 1434
Query: 978 QGREDSLRAPSARVMLGQECRQGTG 1002
D LR + +MLGQ GTG
Sbjct: 1435 YAESDYLRGVTENIMLGQLAPIGTG 1459
>gi|255079898|ref|XP_002503529.1| predicted protein [Micromonas sp. RCC299]
gi|226518796|gb|ACO64787.1| predicted protein [Micromonas sp. RCC299]
Length = 1720
Score = 226 bits (576), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 148/434 (34%), Positives = 221/434 (50%), Gaps = 38/434 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ ++QD +++ ++ RDTF+T+ +MN++ +
Sbjct: 489 RAEVQELMMVPKMIVSPQANKPVMAIVQDTLLACRLITKRDTFITKDVFMNIL---MWHT 545
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N + + P I KP PLWTGKQV S TP D +IR D
Sbjct: 546 NWDGKVPKPAIIKPEPLWTGKQVFSM----FTP-DVNVIRTSAWARDADD---------- 590
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ +V D V + GEL++GI+ KK GS GL+H +W+ G A +S + L
Sbjct: 591 MDFSVDDVGVRVERGELITGIMCKKSMGSGGGGLIHTIWEEWGPTAARDFVSQVQWLLNY 650
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GFT+G+ D + + I KA+ E L+ P + + Q
Sbjct: 651 WLLHYGFTIGISDTIADDRTMQTINDTITKAKSDVKEVVAIYQRGELEMQPGMTAQQ--- 707
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
F ++++ D N+ Q L + NN++ V +G+KGS +N
Sbjct: 708 ------SFEQKVNQILNKARDNAGNSA-QTSLDD-------TNNVKMTVTAGSKGSFLNI 753
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+ +GQ +EGKR + R+LP F ++ P A GFV+ ++ G+ PQEFFFH M
Sbjct: 754 SQMIACVGQQNVEGKRIPFGFTDRSLPHFAKNDLGPEARGFVENSYLRGLTPQEFFFHAM 813
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKR 432
GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +IQ LYGEDG+D T
Sbjct: 814 GGREGLIDTAVKTSETGYIQRRLVKAMEDIIVKYDGTVRNSAGDVIQFLYGEDGMDAT-- 871
Query: 433 QYLTDKQFSFLEDN 446
Y+ ++ L D+
Sbjct: 872 -YVESQKIDTLRDS 884
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 68/109 (62%), Gaps = 5/109 (4%)
Query: 569 LSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKT 628
++LA PG+ +G +AAQSIGEP+TQMTLNTFHFAG NVTLG+PRL+E++ +A K IKT
Sbjct: 1057 VALAPPGDGIGTVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKELINIA-KKIKT 1115
Query: 629 PSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEP 677
PS+ + D+ +AK++ I L V + P+P
Sbjct: 1116 PSLTVALRKDL----AGDRAMAKNVQSILEYTTLHSVAAASEVWYDPDP 1160
Score = 70.1 bits (170), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 85/157 (54%), Gaps = 3/157 (1%)
Query: 863 KESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 922
K+S+ +L T+G+N+ + + + D + N + + GIEA +++E++ V
Sbjct: 1304 KKSEWMLDTEGVNLLEVMNHEDV-DFTRTTSNHLIEVIQVLGIEAVRNTLLKELRGVIEF 1362
Query: 923 YGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGRE 981
G V+ RHL+++ + MT+ G +++ R+GI R+ + + +FE ++ + +A+
Sbjct: 1363 DGSYVNYRHLAILVEVMTYRGHLMSITRHGINRVETGPLMRCSFEETVDILLEAAAFSER 1422
Query: 982 DSLRAPSARVMLGQECRQGTGLFQLR-NREKKKKKVE 1017
D + S +MLGQ C GTG F L N + K+ V+
Sbjct: 1423 DGMNGLSENIMLGQFCPLGTGEFGLHLNEDMLKEAVD 1459
>gi|409193803|gb|AFV31135.1| RNA polymerase II largest subunit [Amoeboaphelidium protococcarum]
Length = 1767
Score = 226 bits (576), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 144/440 (32%), Positives = 221/440 (50%), Gaps = 34/440 (7%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S+ KAE S + V Q + P+ P+ G++QD + K + RD+FLT+ M+L
Sbjct: 499 SYETKAELSEICMVPRQIVSPQANRPVMGIVQDTLCGVRKFTKRDSFLTKEMVMSL---C 555
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGS 128
+ + + + + P I KP+PLWTGKQ+ S +I P +I H + G
Sbjct: 556 MWVRDWDGQLPQPAIIKPVPLWTGKQIFSLII---PPGTNMIGYHSQHPDNESSDISPG- 611
Query: 129 TQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAK 188
DT V I GEL+ GI+ KK G++Q L+H +W HG E +
Sbjct: 612 ----------DTKVVIYDGELVCGIICKKTVGTSQNSLIHVIWKEHGPEKTRNFFDGCQA 661
Query: 189 LFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISS 248
+ +L GF++G+ D + + + I+ A+ TE A L P +
Sbjct: 662 VVNNWLFSYGFSIGIGDTIADAQTMQVVATTISNAKNKVTEYISQAHRNVLQPSPGMT-- 719
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGS 308
+QE++ S + +++R ++N ANN++ MV +G+KGS
Sbjct: 720 -IQESFES--RVNQELNRARDIAGASAQKSLND------------ANNVKQMVVAGSKGS 764
Query: 309 TVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFF 368
+N Q++ +GQ +EG+R RTLP F + SP + GFV+ ++ G+ P E F
Sbjct: 765 FINISQMTACVGQQNVEGRRIPFGFKYRTLPHFTKDDQSPESRGFVENSYLRGLTPSELF 824
Query: 369 FHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
FH M GREGLIDTAVKT+ +GY+QR LVK LE ++V YD +VR++ ++Q YGEDG+D
Sbjct: 825 FHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVSVGYDCSVRNALGQVLQFAYGEDGMD 884
Query: 429 VTKRQYLTDKQFSFLEDNIK 448
T + T ED K
Sbjct: 885 GTSMERQTLDSLRLNEDKFK 904
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 65/98 (66%), Gaps = 1/98 (1%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
S+ P E VG +AAQSIGEP+TQMTLNTFH+AG NVTLG+PRL+EI+ +A + KTP
Sbjct: 1069 SMVAPNEMVGTIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVA-RNNKTP 1127
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKI 667
S I D KL +KA + ++ T+ V ++ +I
Sbjct: 1128 STTIYLKGDYAKLPQKAKEVQAAIEYTTLRKVADRTEI 1165
Score = 80.5 bits (197), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 85/151 (56%), Gaps = 2/151 (1%)
Query: 862 EKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 921
E+ S+ +L+TDGIN+ + ++ D + Y N+I + T GIEA +++E++NV
Sbjct: 1310 EQFSEWVLETDGINLKNVMTVDNV-DAGRTYSNNIVEITETLGIEAGRAALLKELRNVIE 1368
Query: 922 VYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGR 980
G V+ RHLS++ D MT G +A+ R+GI R S + + +FE +E + +A+
Sbjct: 1369 FDGSYVNYRHLSMLCDVMTKHGILMAITRHGINRAETSALARSSFEETVEILMEAAACAE 1428
Query: 981 EDSLRAPSARVMLGQECRQGTGLFQLRNREK 1011
D + + +++GQ GTG F++ EK
Sbjct: 1429 LDQCQGVAENIIMGQVAPLGTGNFKVMLDEK 1459
>gi|110669635|gb|ABG81912.1| RNA polymerase II largest subunit [Pertusaria dactylina]
Length = 1015
Score = 226 bits (575), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 191/630 (30%), Positives = 288/630 (45%), Gaps = 95/630 (15%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S L V + P+ +PL G++QD + K+ RD FLT+ + MN++ L +
Sbjct: 433 RAEVSQLCMVPLNIVSPQRNAPLMGIVQDTLCGIYKICRRDVFLTKEQIMNVL---LWVP 489
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVI---INLTPKDKVIIRHGELLSGILDKKQFGST 129
+ + P I KP P WTGKQ++S VI +NL KDK K+ F
Sbjct: 490 DWDGVIPQPAIIKPRPKWTGKQIISLVIPEGLNLIRKDK--------------KESFS-- 533
Query: 130 QYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKL 189
+ D V + GEL+ G+L+KK G++ GL+H +++ G + A++ + +
Sbjct: 534 ------PINDDGVFVSGGELMYGLLNKKTVGASSSGLIHIIYNELGPQAAMNFFNGAQTV 587
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
+L GF++G+ D + DR ++I NA+ D E+ S
Sbjct: 588 INYWLLHNGFSIGIGDTIP----DRDTIQLIE-----------NAVNKRKDEVAELTRSA 632
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPA---NNLQFMVESGAK 306
+ +P + ++ KV+ +N G + NN M SG+K
Sbjct: 633 TENELEPLPGMNVR-----ETFESKVSKALNTARDDAGTVTEDSLKDLNNAIQMARSGSK 687
Query: 307 GSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQE 366
GS++N Q++ ++GQ +EGKR RTLP F + SP + GFV+ ++ G+ P E
Sbjct: 688 GSSINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTE 747
Query: 367 FFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGE-- 424
FFFH MAGREGLIDTAVKT+ +GY+QR LVK +E + YD TVR+S ++Q +YGE
Sbjct: 748 FFFHAMAGREGLIDTAVKTAETGYIQRRLVKAMEDVMAKYDGTVRNSLGDVVQFVYGEDG 807
Query: 425 -DG-------LDVTK----------RQYLTDKQFSFLEDNIKW---ICSYKVILNLLKKH 463
DG LD+ R L D FS D ++ I + N L +
Sbjct: 808 LDGGHIESQRLDIITCSDGHFEKKFRVDLMDPSFSISADVLEQANVIAGDVKVQNYLDEE 867
Query: 464 --PLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQ- 520
L A L T K+ P ++ + +++ D AR PQ
Sbjct: 868 WEQLKAARTFLRTNKTDENEQLQL-PINVLRILETAKTTFKIKDGARSDLHPA-DVIPQV 925
Query: 521 -----PLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDM--IFYKNLL---- 569
L+ DA N + + R V Y + + ++N+L
Sbjct: 926 RELLDRLVVVRGEDALSKEGQHNATLLFKAHLRSRLAFKRVVMEYSLNKLAFQNVLGEIE 985
Query: 570 -----SLANPGENVGVLAAQSIGEPSTQMT 594
+ NPGE VGVLAAQSIGEP+TQMT
Sbjct: 986 SRFCRAAVNPGEMVGVLAAQSIGEPATQMT 1015
>gi|216296571|gb|ACJ72070.1| RNA polymerase II largest subunit [Trichoplax adhaerens]
Length = 625
Score = 226 bits (575), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 143/416 (34%), Positives = 218/416 (52%), Gaps = 30/416 (7%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE + + V Q + P+ P+ G++QD + + K ++RD FL + MNL+ + +
Sbjct: 39 RAEITEICMVPRQIVTPQSNKPVMGIVQDSLTAVRKFTMRDVFLEKEVVMNLL---MWLP 95
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N + P I +P LWTGKQ+ S +I P + +IR DK + G
Sbjct: 96 NWNGKMPQPAILRPKELWTGKQIFSLII----PGNVNLIRTHSTHPDDEDKGPYKFISPG 151
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
DT V I HGE++SGIL K+ G++ LVH +++ G E A + +
Sbjct: 152 ------DTKVLIEHGEVISGILCKRTLGTSSGSLVHVIFNELGHEIARQFYGNIQTVVNN 205
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L G ++G+ D + + + I KA++ E A L+ P + L++
Sbjct: 206 WLLIEGHSIGIGDSIADEATYQDIQSTILKAKQDVVEVIEKAHNDELEPTP---GNTLRK 262
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
F Q++R DK T + Q L NN + MV +G+KGS +N
Sbjct: 263 T------FENQVNRILNDARDK-TGSSAQKSLSN-------FNNFKAMVVAGSKGSKINI 308
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+ ++GQ +EGKR RTLP F+ + P + GFV+ ++ G+ P EFFFH M
Sbjct: 309 SQVIAVVGQQNVEGKRIPFGFRHRTLPHFIQDDYGPESRGFVENSYLAGLTPTEFFFHAM 368
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
GREGLIDTAVKT+ +GY+QR L+K +EG+ VHYD TVR++++ LIQ+ YGE GLD
Sbjct: 369 GGREGLIDTAVKTAETGYIQRRLIKAMEGVMVHYDGTVRNANMQLIQLCYGEVGLD 424
>gi|68300816|gb|AAY89349.1| RNA polymerase II largest subunit [Antirrhinum majus]
Length = 780
Score = 226 bits (575), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 146/420 (34%), Positives = 218/420 (51%), Gaps = 40/420 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ G++QD ++ K++ RDTF+ + +MN++ +
Sbjct: 188 RAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL---MWWE 244
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + + P I KP PLWTGKQV + +I PK ++R+ S +K+ G G
Sbjct: 245 DFDGKVPAPVILKPRPLWTGKQVFNLII----PKQINLLRY----SAWHQEKEKGFITPG 296
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
DT V I GELL+G L KK G+ L+H +W+ G + A L L
Sbjct: 297 ------DTQVRIEKGELLTGTLCKKTLGTGTGSLIHVIWEEVGPDAARKFLGHTQWLVNY 350
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L + F++G+ D + K + I A+ E A L+ +P + E
Sbjct: 351 WLLQNAFSIGIGDTIADAATMEKINETIQNAKNEVKELIRAAQEKQLEAEP---GRTMME 407
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNIN---QVCLPEGLIEPFPANNLQFMVESGAKGST 309
++ + + +L+K ++ Q L E NNL+ MV +G+KGS
Sbjct: 408 SF----------ENRVNQVLNKARDDAGSSAQKSLSE-------HNNLKAMVTAGSKGSF 450
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q++ +GQ +EGKR RTLP F + P + GFV+ ++ G+ PQEFFF
Sbjct: 451 INISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 510
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H M GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +IQ LYGEDG+D
Sbjct: 511 HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDA 570
Score = 47.4 bits (111), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 25/31 (80%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTF 598
L SL GE +G +AAQSIGEP+TQMTLNTF
Sbjct: 750 LQSLVAAGEMIGCVAAQSIGEPATQMTLNTF 780
>gi|12642610|gb|AAK00309.1|AF315819_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Botryocladia
uvarioides]
Length = 1712
Score = 226 bits (575), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 142/435 (32%), Positives = 221/435 (50%), Gaps = 61/435 (14%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
SH +AE LM V + P+ P+ G++QD ++ + RDTF+ R MNL+
Sbjct: 403 SHGTRAEVQELMLVPHCIVSPQGNKPVMGIVQDTLLGCMLFTQRDTFIERDVMMNLL--- 459
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGS 128
+ + + + P I+KP PLWTGKQ+ S ++ P +I
Sbjct: 460 MHVGDWDGVVPEPAIYKPRPLWTGKQIFSLIL----PPVNLI------------------ 497
Query: 129 TQYGLVH--------AVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAI 180
+Y + H + DT V I G+L+ GI+DKK GS+ GL+H W G +
Sbjct: 498 -RYNITHPDEEQEEISPGDTKVYISQGQLICGIVDKKTVGSSANGLIHVTWKECGPKVTA 556
Query: 181 SLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLD 240
++S + L Y+ + G ++G+ D + D + +IN + G + L
Sbjct: 557 MMISQIQVLVNHYVLQRGQSIGIGDTIAD---DDTMSNVINTIK--GAKEEVKML----- 606
Query: 241 TDPEIISSQLQE-----AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPAN 295
I +Q++E + F ++++ DK + + L +N
Sbjct: 607 ----IKKAQMKELVLLPGKGMMESFETEVNKVLNGARDKSGASAQKSLLK--------SN 654
Query: 296 NLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVD 355
N++ MV +G+KGS +N QI +GQ +EGKR A +GRTLP F ++ P + GFV+
Sbjct: 655 NIKRMVSAGSKGSFINISQICACVGQQNVEGKRIAYGFNGRTLPHFATDDLGPESRGFVE 714
Query: 356 GRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDL 415
++ G+ P EFFFH M GREGLIDTAVKT+ +GY+QR L+K +E + V YD TVR+S
Sbjct: 715 NSYLRGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMEDVMVRYDGTVRNSAN 774
Query: 416 SLIQVLYGEDGLDVT 430
+++ LYGEDG+D T
Sbjct: 775 HVVEFLYGEDGMDAT 789
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 69/109 (63%), Gaps = 3/109 (2%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
L ++A PGEN+G +AAQSIGEP+TQMTLNTFH+AG NVTLG+PRLREI+ + +K K
Sbjct: 999 LGAIAAPGENIGAIAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINV-SKHTK 1057
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPE 676
TPS+ + K + KA + S+ + DV I + + PE
Sbjct: 1058 TPSLTVYLRDKYSKDKGKAKEIQASLQATNLYDVTTSTAI--YYDPDPE 1104
Score = 80.5 bits (197), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 83/145 (57%), Gaps = 2/145 (1%)
Query: 868 LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 927
+L TDG+N+ + + +D + NDI + T GIEA +++E++ V + G V
Sbjct: 1266 VLDTDGVNLKAVMCH-EAVDHTRTMSNDIVEIFETLGIEAVREALLQEIRGVISFDGAYV 1324
Query: 928 DPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRA 986
+ RHLS++ D MT+ G +A+ R+GI R++ + K +FE + + +A+ G D+L+
Sbjct: 1325 NYRHLSILVDVMTYRGHLMAITRHGINRVDTGPLMKCSFEETTDILLEAATFGMRDNLQG 1384
Query: 987 PSARVMLGQECRQGTGLFQLRNREK 1011
S ++LGQ GTG F++ EK
Sbjct: 1385 VSENIVLGQLAPVGTGSFKMMLNEK 1409
>gi|429963895|gb|ELA45893.1| hypothetical protein VCUG_02618 [Vavraia culicis 'floridensis']
Length = 1091
Score = 226 bits (575), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 159/465 (34%), Positives = 234/465 (50%), Gaps = 75/465 (16%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE ++L + Y + +G P+ GL+QD+V+S ++L+D +R+E L I
Sbjct: 160 RAENAYLSSTHENYAL--NGKPVRGLVQDYVVSVFNITLKDRLFSRSEI-----NELLIA 212
Query: 73 NTEIR--TLPPTIWKPMPLWTGKQVLSTVIINLTPKD-KVIIRHGELLSGILDKKQFGST 129
+ E+R P + +P L+TGKQ+ V I L+ D K+ H +S + K+ +
Sbjct: 213 SRELRFTITSPAVLRPKALYTGKQL---VAILLSAYDLKMNYLHTNKISTLYWKEHY--- 266
Query: 130 QYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKL 189
++ V +G + G+LDK + G ++ GLVH + G +L+ + ++
Sbjct: 267 --------EESTVRFHNGYYVHGVLDKSEVGPSKDGLVHCIGMLKGFHVCNDILTAIGRM 318
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLG---------------------- 227
+ YL G LG+ D ++ ++ +R R I + G
Sbjct: 319 VSRYLVCYGQPLGISDFVLEKKHERIRADIFKEGMERGDGVLQGYVQEVFKDVGGGRDGN 378
Query: 228 --TEAACNA-LGLPLDTDPEII--------------SSQLQEAYASIPQF-------RAQ 263
E N G+ +D D SS L ++ R
Sbjct: 379 TKKENTKNVNYGIDIDNDTNTTIDPVGVINHVTVPSSSTLYNTPVTMAPMINLSKNERIN 438
Query: 264 IDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIE 323
+D K + VT+ + + L +G+ PFP N + ++ SGAKGS VN QIS LLGQ
Sbjct: 439 LDNVIKKEMHTVTSQVGDL-LIKGIETPFPLNKMANIILSGAKGSIVNFSQISGLLGQQS 497
Query: 324 LEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAV 383
LEG R +M +GR+L SFL V +GGF+ RF+TG+ FFFHC AGREGLIDTAV
Sbjct: 498 LEGGRVPLMSNGRSLCSFLSSNV--LSGGFIFNRFLTGLSLSSFFFHCQAGREGLIDTAV 555
Query: 384 KTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
KTSRSGYLQRC+VK +EG VHYD +VRD DL L+Q +YGEDG D
Sbjct: 556 KTSRSGYLQRCIVKMMEGTVVHYDTSVRD-DL-LVQYVYGEDGKD 598
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 148/462 (32%), Positives = 218/462 (47%), Gaps = 86/462 (18%)
Query: 574 PGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEI 633
PGE+VG++AAQ+IGEPSTQMTLNTFH AG NVTLG+PRL+EILM+ +K + T
Sbjct: 682 PGESVGMIAAQAIGEPSTQMTLNTFHLAGCA-TNVTLGMPRLKEILMVGSKNVSTVIKG- 739
Query: 634 PFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCFIPAHMY 693
K NR+ + + + D L K+ E E F+ +
Sbjct: 740 ----------KITNRITFDPSTVFLKDALFYFKVVERNETD----------VLFV---LN 776
Query: 694 RDKTSVKPSKIIDHFERKFLKELEVAIAKRAA--QGLKNMNIEQSRDQMEDD--VEDDEG 749
RD V I+ F+R FLKE+ + KR + ++N N D ++ D ED
Sbjct: 777 RD---VGKDTIV-RFKRMFLKEINKGMGKRVTVREIIRN-NKRDVGDGLDSDNSSEDCLD 831
Query: 750 EGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNTS 809
+ GAG + G + S+ R+ ++ +E++ E E D N
Sbjct: 832 SSSNGAGLSTG---IDSNRGRN--------ISISNDENDAVVENNSNETAGNTINDGN-- 878
Query: 810 NIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNLFEEKESKHLL 869
G F + ++ + + + H +SY+ + + S + + +E LL
Sbjct: 879 --GAIF-------SRIYTEQELIEQIRDHSWSYNVIRVTLSACVPVNSTIEKMREKFRLL 929
Query: 870 KTD--GINVN-----------------------FISQYRHLLDLNKLYVNDIHYMASTYG 904
+D GI +N +++ Y +D N ND++ G
Sbjct: 930 DSDITGIEINNDEVTVLGCDYHTFFNYVPSHGVYLNDY---IDFNTCISNDVYNTWEVLG 986
Query: 905 IEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMT 964
IEA VIIRE++ VF YGIE+D RHL L+AD MT +G YVA NR+ R+ S + KM+
Sbjct: 987 IEACRSVIIREIRAVFQAYGIEIDVRHLMLIADKMTVTGEYVAFNRH--RMGGSVLGKMS 1044
Query: 965 FEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
FE +R+A + G +D L PSARV LG R GTG+F L
Sbjct: 1045 FESTYNFLRKAYLYGCDDELEEPSARVALGLPVRNGTGMFDL 1086
>gi|397135832|gb|AFO11411.1| RNA polymerase I, partial [Zygosaccharomyces rouxii]
Length = 871
Score = 226 bits (575), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 144/421 (34%), Positives = 219/421 (52%), Gaps = 45/421 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S L V Q + P+ P G++QD + KL+LRD F+ + +N++Y +
Sbjct: 311 RAELSQLCAVPQQIVSPQSNKPCMGVVQDTLCGIRKLTLRDNFIELGQVLNMLY---WVP 367
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + P I KP PLWTGKQ+LS I PK + R E G+T
Sbjct: 368 DWDGVIPTPAILKPKPLWTGKQLLSVAI----PKGIHLQRFDE-----------GTT--- 409
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ + D + + G+++ G++DKK GS+ GL+H V G + +L S + K+
Sbjct: 410 -LLSPKDNGMLVIDGQIIFGVVDKKTVGSSSGGLIHVVTREKGPQVCATLFSNIQKVVNY 468
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+ GF+ G+ D + + R+ T+ I +A+ + +E
Sbjct: 469 WFLHCGFSTGIGDTIADGQTMRQITEAIAEAKVK-------------------VEDVTKE 509
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQF---MVESGAKGST 309
A A++ + + + +S D V +N+ G + N+ F MV +G+KGS
Sbjct: 510 AQANLLTAKHGMTLR-ESFEDNVVRYLNEARDKAGRLAEVNLNDTNFVKQMVSAGSKGSF 568
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+S +GQ +EGKR A RTLP F + SP + GFV+ ++ G+ PQEFFF
Sbjct: 569 INIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFF 628
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H M GREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S ++IQ +YGEDG+D
Sbjct: 629 HAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGNIIQFIYGEDGMDA 688
Query: 430 T 430
Sbjct: 689 A 689
>gi|340368153|ref|XP_003382617.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Amphimedon queenslandica]
Length = 1933
Score = 226 bits (575), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 147/417 (35%), Positives = 210/417 (50%), Gaps = 31/417 (7%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAE LM V L P+ P+ G++QD + + K + RD FL + MNL+ + +
Sbjct: 505 KAEIQELMMVHRNILTPQSNRPVMGIVQDSLTAATKFTKRDVFLEKESMMNLL---MWLP 561
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKV-IIRHGELLSGILDKKQFGSTQY 131
+ + + P I KP PLWTGKQ+ S +I P V +IR D +
Sbjct: 562 SWDGKMPVPAILKPKPLWTGKQLFSLII----PGTNVNVIRTHSTHPDDEDNGPYKWISP 617
Query: 132 GLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFT 191
G DT V + HG+LLSGIL K G+ L+H V G + A + + +
Sbjct: 618 G------DTKVLVEHGQLLSGILSKDTLGNKGGSLMHVVAMELGPDIARNFYGNIQTVVN 671
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQ 251
+L G ++G+ D + K I A+ E A L+ P + L+
Sbjct: 672 NFLMLEGHSIGIGDTIADNLTYNDIQKTIRSAKNDVVEVIKKAHNNELEPTP---GNTLR 728
Query: 252 EAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVN 311
+ F Q++R DK T + Q L E NN + MV +G+KGS +N
Sbjct: 729 QT------FENQVNRILNEARDK-TGSSAQRSLSE-------FNNFKIMVTAGSKGSKIN 774
Query: 312 TMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHC 371
Q+ +GQ +EGKR RTLP F+ + P + GFV+ ++ G+ P EFFFH
Sbjct: 775 ISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPNEFFFHA 834
Query: 372 MAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
M GREGLIDTAVKTS +GY+QR L+K +EGL HYD T+R+S+ +IQ+ YGEDG+D
Sbjct: 835 MGGREGLIDTAVKTSETGYIQRRLMKAMEGLMAHYDGTIRNSNSQMIQLCYGEDGMD 891
Score = 124 bits (310), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 129/457 (28%), Positives = 217/457 (47%), Gaps = 59/457 (12%)
Query: 574 PGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEI 633
PGE VG LAAQS+GEP+TQMTLNTFH+AG NVTLG+PRL+EI+ ++ K KTPS+ I
Sbjct: 1077 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKP-KTPSLTI 1135
Query: 634 PFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPH---MNYQMKFCFIPA 690
FL + + + A + + RI L KV + P+P + +F
Sbjct: 1136 -FL--LGQAARDAEKCKDVLCRIEHT-TLSKVTANTSIFYDPDPQNTVIAEDQEF----V 1187
Query: 691 HMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGE 750
++Y + P+ I +L LE+ R K + +EQ +++ DD
Sbjct: 1188 NVYYEMPDFDPALI-----SPWLLRLEL---DRKRMTDKKLTMEQIAEKISSTFGDDL-- 1237
Query: 751 GAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNTSN 810
R + D + E V + +N +D ++ DEE++ + E++
Sbjct: 1238 ----------RCLFNDD---NAEKLVLRIRLMN-SDDQKYQSEADEEQLDKMEDETFLRC 1283
Query: 811 IGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNLFEEKESKHL-- 868
+ D T ++ + + +H + D K + + E+ E K +
Sbjct: 1284 LEANL---LSDMTLQGIEQISKVY--MHYPTQDSKKRIV---------ISEQGEFKAIQE 1329
Query: 869 --LKTDGIN-VNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 925
L+TDG+N + +S+ +D + N I + GIEA + + +E+ +V + G
Sbjct: 1330 WILETDGVNLLRVLSEPS--VDPVRTTSNHIVEIFQVLGIEAVRKALEKEINHVISFDGS 1387
Query: 926 EVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSL 984
V+ RHL+L+ D MT G +A+ R+G+ R + + +FE ++ + +A+ D +
Sbjct: 1388 YVNYRHLALLCDIMTCRGHLMAVTRHGVNRQEVGALMRCSFEETVDILMEAAGHAEVDKM 1447
Query: 985 RAPSARVMLGQECRQGTGLFQLR-NREKKKKKVEAKG 1020
+ S +MLGQ + GTG F+L + EK K +E G
Sbjct: 1448 QGVSECIMLGQLPKGGTGAFELMLDAEKCKSAMEISG 1484
>gi|159467413|ref|XP_001691886.1| DNA-directed RNA polymerase II, largest subunit [Chlamydomonas
reinhardtii]
gi|158278613|gb|EDP04376.1| DNA-directed RNA polymerase II, largest subunit [Chlamydomonas
reinhardtii]
Length = 1789
Score = 226 bits (575), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 146/451 (32%), Positives = 231/451 (51%), Gaps = 45/451 (9%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
+H +AE + LM V + P+ P+ G++QD ++ ++ RD F+ + +MN
Sbjct: 504 THETRAEMANLMMVPRNIVSPQANKPVMGIVQDALLGTRMMTKRDIFIEKDNFMN----- 558
Query: 69 LCILNTEI--RTLP-PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQ 125
C++ E T+P P + KP PLWTGKQ+ S + ++ K+K + +
Sbjct: 559 -CVMGIEDWDGTVPMPAVLKPRPLWTGKQIFSMFVPDVNLKNKSAWYKDADVPDM----- 612
Query: 126 FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSC 185
+V D V IR GELL+G L KK G+ GLVH W HG A ++
Sbjct: 613 ----------SVDDAQVLIRQGELLTGALCKKTVGNGAGGLVHLTWLEHGPHAARGFINN 662
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEI 245
+ + ++ G ++G+ D + + K +II +A+R E L+ P
Sbjct: 663 VQRTVNYWVLNHGMSIGIGDTVADAKTMAKVNEIIEEAKRKVKEVVEKYQQNALEAQP-- 720
Query: 246 ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGA 305
+ E+ F AQ+++ +L+K ++ + + +NN+ MV +G+
Sbjct: 721 -GRTIHES------FEAQVNQ----ILNKCRDDAGKAAYMSVDL----SNNIIKMVTAGS 765
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS +N Q+ +GQ +EGKR RTLP F ++ P A GFV ++ G+ PQ
Sbjct: 766 KGSNINISQMMGCVGQQNVEGKRIPFGFQNRTLPHFNKDDLGPEARGFVGNSYLRGLTPQ 825
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EFFFH M GREGLIDTAVKT+ +GY+QR LVK +E + V Y TVR+S ++Q LYGED
Sbjct: 826 EFFFHAMGGREGLIDTAVKTASTGYIQRRLVKAMEDMVVRYGGTVRNSQGDVVQFLYGED 885
Query: 426 GLDVTKRQYLTDKQFSFLE-DNIKWICSYKV 455
G+D + + + F +L+ D K +Y++
Sbjct: 886 GMDAVR---IEGQMFEYLKWDPAKLDKAYRI 913
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 66/100 (66%), Gaps = 1/100 (1%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
L+ A+ GE VG +AAQS+GEP+TQMTLNTFHFAG NVTLG+PRL E++ +A K IK
Sbjct: 1070 FLAQAHAGECVGTVAAQSLGEPTTQMTLNTFHFAGVSAKNVTLGVPRLTELINLA-KNIK 1128
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKI 667
TP++ + LP + + + A + + +V++ +I
Sbjct: 1129 TPTLTVHLLPGLRENKDAAKEIQSKLEYTCFKNVVKTTEI 1168
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 77/145 (53%), Gaps = 2/145 (1%)
Query: 863 KESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 922
K + +L T+GIN+ + + + D + N I + GIEAA + +EV+NV
Sbjct: 1321 KYEEWILDTEGINLEQVLAFEGV-DSRRTMSNSIIEVLEVLGIEAARAALFKEVRNVIQF 1379
Query: 923 YGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSF-IQKMTFEMPLEKIRQASMQGRE 981
G V+ RHL+ + D MT G +A+ R+GI N + + + +FE ++ + +A+M G
Sbjct: 1380 DGSYVNYRHLACLVDIMTCKGCLMAITRHGINRNGNGPMTQCSFEETVDILYRAAMFGER 1439
Query: 982 DSLRAPSARVMLGQECRQGTGLFQL 1006
D L S +M+G C GTG F L
Sbjct: 1440 DKLMGVSDNIMMGNMCPLGTGSFDL 1464
>gi|255719376|ref|XP_002555968.1| KLTH0H02046p [Lachancea thermotolerans]
gi|238941934|emb|CAR30106.1| KLTH0H02046p [Lachancea thermotolerans CBS 6340]
Length = 1740
Score = 226 bits (575), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 150/419 (35%), Positives = 222/419 (52%), Gaps = 41/419 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S L V Q + + P G++QD + K++LRDTF+ + +N++Y I
Sbjct: 498 RAELSQLCAVPQQIVSAQSNKPCMGIVQDTLCGVRKMTLRDTFIELDQVLNMLY---WIP 554
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGI-LDKKQFGSTQY 131
+ + P I KP PLW+GKQ+LS I SGI L + G+T
Sbjct: 555 DWDGVIPTPIILKPKPLWSGKQILSIAI----------------PSGIHLQRFDEGTT-- 596
Query: 132 GLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFT 191
+ + D + I G+++ G++DKK GS+ GL+H V G + L S L K+
Sbjct: 597 --LLSPKDNGMLIIDGQIIFGVVDKKTVGSSSGGLIHVVTREKGPKICARLFSNLQKVVN 654
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQ 251
+L GF++G+ D + ++ R+ T+ I A+R E A L + L+
Sbjct: 655 FWLLHNGFSIGIGDTIADEKSMREITEAIIVAKRKVEEVTKEAQANLLTAKHGMT---LR 711
Query: 252 EAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVN 311
E+ F + R DK + +V L + NN++ MV +G+KGS +N
Sbjct: 712 ES------FEDSVVRYLNEARDKAGRSA-EVNLKD-------LNNVKQMVSAGSKGSFIN 757
Query: 312 TMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHC 371
Q+S +GQ +EGKR A + RTLP F + SP + GFV+ ++ G+ PQEFFFH
Sbjct: 758 IAQMSACVGQQSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHA 817
Query: 372 MAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVT 430
M GREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S ++IQ +YGEDG+D
Sbjct: 818 MGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGNVIQFIYGEDGMDAA 876
Score = 137 bits (345), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 129/449 (28%), Positives = 212/449 (47%), Gaps = 68/449 (15%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
L S+ +PGE VGVLAAQSIGEP+TQMTLNTFHFAG VT G+PRL+EIL +A K +K
Sbjct: 1054 LRSIVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVA-KNMK 1112
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNY------ 681
TPS+ + D ++KA + ++ T L+ + + + P+P
Sbjct: 1113 TPSLTVYLDKDHAADQEKAKLIRSAIEHTT----LKSITVASEIYYDPDPRSTVIEEDEE 1168
Query: 682 --QMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQ 739
Q+ F + + +D ++ +L LE+ RAA K++ + Q ++
Sbjct: 1169 IIQLHFSLMDEET---------EQSLD-YQSPWLLRLEL---DRAAMNDKDLTMGQVGEK 1215
Query: 740 MEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERM 799
+++ ++D + V E+ E+ ++ + V + D E +E+ M
Sbjct: 1216 IKETFKND--------------LFVIWSEDNAEKLIIRC-RVVRDPKTLDAEAEAEEDHM 1260
Query: 800 SEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNL 859
+R E+ +I R V+D+ V YD+K +PS
Sbjct: 1261 LKRIENTMLESITLR-----------GVEDITR----VVMMKYDRK---------VPSPT 1296
Query: 860 FE-EKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKN 918
E K + +L+TDG+N+ + +D ++Y N + + GIEA + +EV N
Sbjct: 1297 GEYHKVPEWVLETDGVNLAEVMCVPG-VDPARIYTNSFIDIMNVLGIEAGRAALYKEVYN 1355
Query: 919 VFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASM 977
V A G V+ RH++L+ D MT G +++ R+G R + + + +FE +E + +A
Sbjct: 1356 VIASDGSYVNYRHMALLVDVMTSQGFLMSVTRHGFNRSDTGALMRCSFEETVEILFEAGA 1415
Query: 978 QGREDSLRAPSARVMLGQECRQGTGLFQL 1006
D R S V+LGQ GTG F +
Sbjct: 1416 AAELDDCRGVSENVLLGQVAPIGTGAFDV 1444
>gi|68300819|gb|AAY89350.1| RNA polymerase II largest subunit [Solanum lycopersicum]
Length = 773
Score = 225 bits (574), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 150/452 (33%), Positives = 231/452 (51%), Gaps = 45/452 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ G++QD ++ K++ RDTF+ + +MN++ +
Sbjct: 188 RAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKVTKRDTFIEKDVFMNIL---MWWE 244
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + + P I KP PLWTGKQV + +I PK ++R+ S + + G G
Sbjct: 245 DFDGKVPAPVILKPRPLWTGKQVFNLII----PKQINLLRY----SVWHNDSEKGYITPG 296
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
DT V I GELLSG L KK G++ L+H +W G + A L L
Sbjct: 297 ------DTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWXEVGPDAARKFLGHTQWLVNY 350
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L + F++G+ D + K + I+ A+ E A L+ +P + E
Sbjct: 351 WLLQQAFSIGIGDTIADASTMEKINETISNAKAKVKELIKAAQEKLLEAEP---GRTMME 407
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
++ + + +L+K ++ + L E +NNL+ MV +G+KGS +N
Sbjct: 408 SF----------ENRVNQVLNKARDDAGSSA-EKSLSE---SNNLKAMVTAGSKGSFINI 453
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q++ +GQ +EGKR RTLP F + P + GFV+ ++ G+ PQEFFFH M
Sbjct: 454 SQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 513
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD---- 428
GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +IQ LYGEDG+D
Sbjct: 514 GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWI 573
Query: 429 -------VTKRQYLTDKQFSFLEDNIKWICSY 453
+ ++ D +++ D+ W SY
Sbjct: 574 ETQKLDSLKAKKGTFDDMYAYEIDDPNWNPSY 605
>gi|398409068|ref|XP_003855999.1| DNA-directed RNA polymerase III subunit RPO31 [Zymoseptoria tritici
IPO323]
gi|339475884|gb|EGP90975.1| hypothetical protein MYCGRDRAFT_83445 [Zymoseptoria tritici IPO323]
Length = 1435
Score = 225 bits (574), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 196/690 (28%), Positives = 316/690 (45%), Gaps = 97/690 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEY---MNLVYQAL 69
+ EA+ LM V PK+G+P+ IQD + +S +D F R ++ + +Y L
Sbjct: 475 RTEATELMGVKHNLATPKNGTPIIAAIQDFITGAFLISRKDQFFNRRQFNQAVTFMYDGL 534
Query: 70 CILNT------EIRTLPPTIWKPMPLWTGKQVLSTVI---------INLTPKDKVII--- 111
+ + I P IWKP LWTGKQ+ ++ +NL K K
Sbjct: 535 QVKDPLTGETHNIEIPAPAIWKPQTLWTGKQIWDVLMKPHRHYPVNVNLEAKLKSFAPPK 594
Query: 112 RHGELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFG-STQYGLVHAV 170
R G++ ++D D+++ IR+ + G DK G + + + +
Sbjct: 595 RKGDI-DDMVDS---------------DSYLVIRNSVTMCGGFDKATVGDGKKTSVFYVI 638
Query: 171 WDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEA 230
G ++A + ++ LAKL +L GF++G+ D+ + + ++ ++++ A R
Sbjct: 639 MRDFGVDYAAAAMTRLAKLSARWLGEQGFSIGISDVYPSDKLNLRKKELVDAAYR----- 693
Query: 231 ACNALGLPLDTDPEIIS----SQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPE 286
C+ EII QL+ + + +I L+ + + + Q C
Sbjct: 694 QCD----------EIIDKFKKGQLERSAGCDEEQTMEI------LMSGILSAVRQQCGDA 737
Query: 287 GLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEV 346
E N M + G+KGS +N Q+ +GQ + GKR RTLP F
Sbjct: 738 CFAELSKFNAPLTMAKCGSKGSNINVSQMVAAVGQQIIGGKRVLDGFQDRTLPHFPKASR 797
Query: 347 SPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHY 406
P A GFV F +G+ P EF FH M+GREGL+DTAVKT+ +GY+ R L+K LE L+ Y
Sbjct: 798 DPLAKGFVVDSFFSGLSPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSAQY 857
Query: 407 DMTVRDSDLSLIQVLY---GEDGLDVTKRQYLTDKQFSFLE------DNIKWICSYKVIL 457
D+TVR+S ++Q+ + G D +D+ + +++ DN + + I
Sbjct: 858 DLTVRNSSSGVVQMKFGDDGLDPVDMEGNAKPVNFDRTWMHAITSTWDNSERGLTQNEIE 917
Query: 458 NLLKKHPLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKA 517
++ + L L+ G P + K T L LDD ++ K
Sbjct: 918 EMVHE-TLDKERAKLVRITDDGLP-LPYKDATPKSTDQLEYSRTFLDDVTNYIFKHVRK- 974
Query: 518 CPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGEN 577
L+S+ H GS D V K ++ S ++ F + K S G
Sbjct: 975 ----LVSSQH--RHRGS------DDVFKLSQ-----SALECFLYLCLRKFEKSKVEAGHA 1017
Query: 578 VGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLP 637
VG + AQSIGEP TQMTL TFHFAG M++T G+PR++EI+ A+K+I TP +
Sbjct: 1018 VGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEII-NASKSISTPVITCAL-- 1074
Query: 638 DMPKLEKKANRLAKSMTRIT-MADVLEKVK 666
D P E+ A R AK++ T + D+++ ++
Sbjct: 1075 DSP-YEEMAGRFAKALIEKTYLGDIVDYIE 1103
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 76/151 (50%), Gaps = 15/151 (9%)
Query: 857 SNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREV 916
S L E K + TDG+ D + N++ GIEAA + II E+
Sbjct: 1232 SVLVEGYGLKACMTTDGV------------DGYRTKSNNVMECKDVLGIEAARKTIIDEI 1279
Query: 917 KNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQA 975
V G+++DPRH+ L+AD MT+ G + + R G+ ++ S +Q +FE + + +A
Sbjct: 1280 SAVMG--GMDIDPRHMQLLADVMTYKGEVLGITRFGLAKMRDSVLQLASFEKTPDHLFEA 1337
Query: 976 SMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+ + ++D + S +++GQ GTG ++
Sbjct: 1338 AAKMKKDDIEGVSECIIMGQVMGVGTGAMKV 1368
>gi|390603892|gb|EIN13283.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Punctularia strigosozonata HHB-11173 SS5]
Length = 1729
Score = 225 bits (574), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 154/427 (36%), Positives = 219/427 (51%), Gaps = 61/427 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE + + V Q + P+ P+ ++QD + K +LRDTFL + N++ L +
Sbjct: 510 RAELAQIAWVPRQIISPQANKPVMAIVQDTLCGIRKFTLRDTFLDWNQVQNIL---LWVP 566
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ PTI KP P+WTGKQ+LS I P+ I R + S
Sbjct: 567 EWDGTVPIPTIVKPKPMWTGKQILSMCI----PRGINIFRSPDPKSS------------- 609
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
V+D + I +G+++ GI+DKK GS Q GL+H V+ G E L S L ++
Sbjct: 610 --SPVFDDGMMIENGDIIFGIVDKKTVGSAQGGLIHVVFREKGPEATRGLFSGLQQVVNY 667
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINK--ARRLGTEAACNALGLPLDTDPEIISSQL 250
+L GF++G+ D + D K T +I+K A R T +S
Sbjct: 668 WLFHNGFSIGIGDTIA----DDKTTAVISKIIADRKAT-----------------VSKIT 706
Query: 251 QEAYAS--IPQFRAQIDRQYKSLLDKVTN-------NINQVCLPEGLIEPFPANNLQFMV 301
Q+AY PQ I ++S +++ N Q L E NN++ MV
Sbjct: 707 QDAYHDRLKPQPGMTIRESFESKVERELNLARDDSGQYAQKHLKED-------NNVKQMV 759
Query: 302 ESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTG 361
+G+KGS +N Q+S +GQ +EG+R RTLP F + SP A GFV+ ++ G
Sbjct: 760 VAGSKGSYINISQMSVCVGQQSVEGRRIPFGFRHRTLPHFTKDDFSPEARGFVENSYLRG 819
Query: 362 IQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVL 421
+ P EFFFH MAGREGLIDTAVKT+ +GY+QR LVK LE + V YD TVR+S LIQ +
Sbjct: 820 LTPHEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVAVCYDGTVRNSLGDLIQFV 879
Query: 422 YGEDGLD 428
YGEDG+D
Sbjct: 880 YGEDGMD 886
Score = 99.8 bits (247), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 71/106 (66%), Gaps = 3/106 (2%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
S+A+PGE G LAAQSIGEP+TQMTLNTFH+AG NVTLG+PRL+EI+ +AT IKTP
Sbjct: 1070 SVAHPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATN-IKTP 1128
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISP 675
S+ + +P++ K A + + + T+ V V+I W + P
Sbjct: 1129 SLTVYLVPELQKDAMLAKNVQQELAYTTLRTVTAAVEI--WYDPDP 1172
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 81/147 (55%), Gaps = 2/147 (1%)
Query: 861 EEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 920
+E E + +L+TDGIN+ + + D + Y N+ + GIEAA I+RE++NV
Sbjct: 1319 DENEKEWVLETDGINLKTVMCIDGV-DFKRTYSNNCVEIFDVLGIEAARAAIMREMRNVI 1377
Query: 921 AVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQG 979
G V+ RHL+L+ D MT GT +A+ R+GI R + + + +FE +E + +A+ G
Sbjct: 1378 EFDGSYVNYRHLALLCDLMTQRGTLMAITRHGINRADTGALMRCSFEETVEILMEAAAVG 1437
Query: 980 REDSLRAPSARVMLGQECRQGTGLFQL 1006
+D + VM GQ GTG F +
Sbjct: 1438 EKDDCHGIAENVMFGQMAPMGTGAFDV 1464
>gi|391335740|ref|XP_003742247.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Metaseiulus occidentalis]
Length = 1842
Score = 225 bits (574), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 152/426 (35%), Positives = 219/426 (51%), Gaps = 32/426 (7%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V Q + P+ P+ G++QD + + K++ RD +L + + MNL+ L I
Sbjct: 505 RAEIEQLAMVPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVYLEKDQMMNLL-MFLPIW 563
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N ++ P I KP PLWT KQ+ S +I P + +IR D + G
Sbjct: 564 NGKVPI--PAILKPKPLWTAKQLFSLII----PGNVNLIRTHSTHPDEEDDGPYKWISPG 617
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
DT V I HG+LLSGI+ KK G++ L+H ++ G A + S L +
Sbjct: 618 ------DTKVIIEHGQLLSGIVCKKTVGASAGSLMHVLFVEMGHRVAGAFYSHLQTVVNA 671
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L G ++G+ D + Q+ I KA++ E A L+ P + L++
Sbjct: 672 WLLYEGHSIGIGDTIADQQTYMDIQNTIKKAKQDVIEVIEKAHNDELEPTP---GNTLRQ 728
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
F Q++R DK T Q L E NN + MV SGAKGS +N
Sbjct: 729 T------FENQVNRILNDARDK-TGGSAQKSLSE-------FNNFKSMVVSGAKGSKINI 774
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+ +GQ +EGKR RTLP F+ + P + GFV+ ++ G+ P EFFFH M
Sbjct: 775 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDFGPESRGFVENSYLAGLTPSEFFFHAM 834
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD--VT 430
GREGLIDTAVKT+ +GY+QR L+K +E + + YD TVR+S+ +IQ YGEDGLD
Sbjct: 835 GGREGLIDTAVKTAETGYIQRRLIKAMESVMICYDGTVRNSNGQVIQFRYGEDGLDGCCV 894
Query: 431 KRQYLT 436
+ QYLT
Sbjct: 895 ESQYLT 900
Score = 83.6 bits (205), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 51/64 (79%), Gaps = 1/64 (1%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
S +PGE VG LAAQS+GEP+TQMTLNTFH+AG NVTLG+PRL+EI+ + +K KTP
Sbjct: 1072 SQGHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINI-SKQPKTP 1130
Query: 630 SMEI 633
S+ +
Sbjct: 1131 SLTV 1134
Score = 80.1 bits (196), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 86/155 (55%), Gaps = 3/155 (1%)
Query: 865 SKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 924
S+ LL+TDG ++ + R + D + Y NDI + S GIEA + + +E+ +V + G
Sbjct: 1326 SEWLLETDGTSLMRVLSERDV-DPVRTYSNDIIEVFSVLGIEAVRKAVEKEMNHVISFDG 1384
Query: 925 IEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDS 983
V+ RHL+L+ D MT G +A+ R+GI R + + + +FE ++ + A+ D
Sbjct: 1385 SYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDILMDAAFHAEADK 1444
Query: 984 LRAPSARVMLGQECRQGTGLFQLR-NREKKKKKVE 1017
L+ S ++LG+ R GTG F L + EK K +E
Sbjct: 1445 LKGVSENIILGKLARMGTGAFDLMLDAEKCKHGIE 1479
>gi|449462093|ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Cucumis
sativus]
Length = 1400
Score = 225 bits (574), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 188/636 (29%), Positives = 289/636 (45%), Gaps = 65/636 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+ EA LM V + PK+G L QD + S ++ +DTF RA + +C
Sbjct: 510 RTEAILLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRA-----AFSLMCSY 564
Query: 73 ---NTEIRTLP-PTIWKPMPLWTGKQVLSTVI---------INLTPKDKVIIRHGELLSG 119
++ LP P + KP+ LWTGKQ+ S ++ +NLT K+K
Sbjct: 565 MGDGMDLVDLPTPALVKPIELWTGKQLFSVLVRPHASMKVYLNLTVKEKSY--------- 615
Query: 120 ILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEH 178
K G+ + D V R+ EL+SG + K G+ + GL + + A
Sbjct: 616 ---SKVKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGLYSVLLRDYKAHA 672
Query: 179 AISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLP 238
A ++ LAKL ++ GF++G+ D+ + +K+ I + R
Sbjct: 673 AAVCMNRLAKLSARWIGNHGFSIGIDDVQPGDQLVKKKQTTILEGYR------------- 719
Query: 239 LDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQ 298
D D +I L P+ + +S + ++ N I + + N+
Sbjct: 720 -DCDKQI---NLFNTGNLPPEAGCDAAQSLESKITQILNGIREATANVCMQNLHWRNSPL 775
Query: 299 FMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRF 358
M + G+KGS +N Q+ +GQ + G+R R+LP F +P A GFV F
Sbjct: 776 IMSQCGSKGSPINISQMVACVGQQSVGGRRAPDGFIDRSLPHFRRKAKTPAAKGFVANSF 835
Query: 359 MTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLI 418
+G+ EFFFH M GREGL+DTAVKT+ +GY+ R L+K LE L++HYD +VR++ ++
Sbjct: 836 YSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDSSVRNAGGCIV 895
Query: 419 QVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILN-LLKKHPLSLALLLLLTFKS 477
Q YG+DG+D + + + +F +K + N +L S + L+ K
Sbjct: 896 QFCYGDDGMDPAQMEGKSGAPLNFERLFLKAKATCPSDGNKILSPSEFSETVEDRLS-KD 954
Query: 478 SGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISE 537
P SP L ++ + A+KK A + + D S S+
Sbjct: 955 DASPECGCSPAFVGSLKIFLNKYVE----AQKKSWGTLLADNESAV-----DKSIISSSD 1005
Query: 538 N----LADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQM 593
N + + VV+ G T + F D + G +G + AQSIGEP TQM
Sbjct: 1006 NDNIVIRNKVVQNIAGVTH-RQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGEPGTQM 1064
Query: 594 TLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
TL TFHFAG MNVTLG+PR++EI+ A K I TP
Sbjct: 1065 TLKTFHFAGVASMNVTLGVPRIKEIINGA-KRISTP 1099
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 64/117 (54%), Gaps = 1/117 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N I + GIEAA + II E+K +G+ +D RH+ L+ D MT G + + R GI
Sbjct: 1268 NHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLMTFRGEVLGITRFGI 1327
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNR 1009
+++ S + +FE + + AS+ GR+D + S V++G GTG+ ++R R
Sbjct: 1328 QKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPMPLGTGMLKVRQR 1384
>gi|397135916|gb|AFO11453.1| RNA polymerase I, partial [Babjeviella inositovora]
Length = 872
Score = 225 bits (574), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 145/419 (34%), Positives = 220/419 (52%), Gaps = 39/419 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S + V Q + P+ P+ G++QD + K++LRD F+ + MN+ + I
Sbjct: 311 RAELSQICAVPLQIISPQSNKPIMGIVQDTLCGVRKMTLRDNFVEYDQVMNMCF---WIP 367
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + P I KP PLWTGKQ+LS I PK GI ++ G +
Sbjct: 368 DWDGVIPEPAILKPKPLWTGKQLLSLCI----PK------------GIHLQRFDGGASWS 411
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ D+ + I GE+L G++DKK G+T GL+H V G+ L + K+
Sbjct: 412 ---SPTDSGMLIIDGEVLFGVVDKKTVGATAGGLIHTVMREKGSAVCAKLFGNMQKVVNF 468
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + R+ T I++A+ E A L+ +P + L+E
Sbjct: 469 WLLHNGFSIGIGDTIADASTMREITNTISEAKEKVQEIILLAHLNTLEPEPGMT---LRE 525
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
++ ++ + +V N + NN++ MV G+KGS +N
Sbjct: 526 SF--------------ENNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVVCGSKGSFINI 571
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EG+R + RTLP F + SP + GFV+ ++ G+ PQEFFFH M
Sbjct: 572 SQMSACVGQQIVEGRRIPFGFADRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAM 631
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTK 431
AGREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S +IQ +YGEDG+D T+
Sbjct: 632 AGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDSTARNSLGDVIQFVYGEDGIDGTQ 690
>gi|242078217|ref|XP_002443877.1| hypothetical protein SORBIDRAFT_07g003680 [Sorghum bicolor]
gi|241940227|gb|EES13372.1| hypothetical protein SORBIDRAFT_07g003680 [Sorghum bicolor]
Length = 1857
Score = 225 bits (574), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 150/427 (35%), Positives = 221/427 (51%), Gaps = 54/427 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ G++QD ++ K++ RDT + + +MN++ +
Sbjct: 510 RAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNIL---MWWQ 566
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + + P I KP P+WTGKQV + +I PK +IR S +++ G G
Sbjct: 567 DFDGKIPAPAILKPRPIWTGKQVFNLII----PKQINLIR----FSAWHSEEEKGFITPG 618
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
DT V I GELLSG L KK G+ L+H +W+ G + A L L
Sbjct: 619 ------DTMVRIEKGELLSGTLCKKSLGTGTGSLIHIIWEEVGPDAARKFLGHTQWLVNY 672
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L + GF++G+ D + D + IN + C A D E+I ++
Sbjct: 673 WLLQNGFSIGIGDTIA----DASTMQTIN-------DTICKAK----DEVKELIKKAHEK 717
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQV----------CLPEGLIEPFPANNLQFMVE 302
Q A+ R ++++ N +NQV + L E +NNL+ MV
Sbjct: 718 ------QLEAEPGR---TMMESFENRVNQVLNKARDDAGSSAQKSLSE---SNNLKAMVT 765
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
+G+KGS +N Q++ +GQ +EGKR RTLP F + P + GFV+ ++ G+
Sbjct: 766 AGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGL 825
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
PQEFFFH M GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +IQ LY
Sbjct: 826 TPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLY 885
Query: 423 GEDGLDV 429
GEDG+D
Sbjct: 886 GEDGMDA 892
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 119/438 (27%), Positives = 209/438 (47%), Gaps = 54/438 (12%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
L SL PGE +G +AAQSIGEP+TQMTLNTFH+AG NVTLG+PRLREI+ +A K IK
Sbjct: 1072 LQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA-KKIK 1130
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCF 687
TPS+ + P++ + ++ A + ++ T+ V +I W + P + + F
Sbjct: 1131 TPSLSVYLKPEVNQKKELAKNVQCALEYTTLRSVTHATEI--WYDPDPLGTI-IEEDAEF 1187
Query: 688 IPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDD 747
+ ++ + P KI +L +E+ R K +++ D++ + +DD
Sbjct: 1188 VQSYYEMPDEDIDPDKI-----SPWLLRIEL---NREMMVDKKLSMADIADKINREFDDD 1239
Query: 748 EGE--GAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREED 805
+ A + R+ +++DE A + + ED+ F ++ E
Sbjct: 1240 LSCIFNDDNADKLILRIRITNDE------APKGEIQDESAEDDVF---------LKKIEG 1284
Query: 806 DNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNLFEEKES 865
+ + + R D VF+K+ + N ++ K + W
Sbjct: 1285 NMLTEMALR---GIPDINKVFIKE--GKVNTFYQDEGFKAANEW---------------- 1323
Query: 866 KHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 925
+L T+G+N+ + + +D + N + + GIEA R ++ E++ V + G
Sbjct: 1324 --MLDTEGVNLLAVMCHED-VDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGS 1380
Query: 926 EVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSF-IQKMTFEMPLEKIRQASMQGREDSL 984
V+ RHL+++ D MT+ G +A+ R+GI N + + + +FE ++ + A++ D L
Sbjct: 1381 YVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDHL 1440
Query: 985 RAPSARVMLGQECRQGTG 1002
R + +MLGQ GTG
Sbjct: 1441 RGVTENIMLGQLAPIGTG 1458
>gi|303389791|ref|XP_003073127.1| DNA-directed RNA polymerase subunit alpha [Encephalitozoon
intestinalis ATCC 50506]
gi|303302272|gb|ADM11767.1| DNA-directed RNA polymerase subunit alpha [Encephalitozoon
intestinalis ATCC 50506]
Length = 1315
Score = 225 bits (574), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 184/627 (29%), Positives = 300/627 (47%), Gaps = 81/627 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE+S LM+VS+ + P+ G P+ QD + ++ +DTF R + LV
Sbjct: 486 RAESSILMSVSNNIVTPRHGEPIVAATQDFITGLYLITGKDTFFDRERFGQLVSYF---- 541
Query: 73 NTEIR-TLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR--HGELLSGILDKKQFGST 129
+E R ++ P I KP+ L+TGKQ++ +I + + R +G +S + + F +
Sbjct: 542 -SETRISMKPAIKKPVELFTGKQLVEALIKDSFAASREDYRSPYGGCISLVGKNRSFKTH 600
Query: 130 QYGLVHAVWDTHVTIRHGELLSGILDKKQFG--STQYGLVHAVWDTHGAEHAISLLSCLA 187
D V I G LDK G + + L++A+ + AI +++ +
Sbjct: 601 D-----DPNDGSVIILDNLYYFGRLDKSIIGGENKKDSLIYAIMKVSN-KAAIRVMNSIT 654
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIIS 247
KL + YL VGF++G+ D+ +K+ ++ K L+ + +I+
Sbjct: 655 KLCSRYLGEVGFSIGLDDVQPGPILRQKKETVVGKGY--------------LECENKIL- 699
Query: 248 SQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKG 307
E ++ + S+L+++ +C+ E I P N +Q G+KG
Sbjct: 700 ----EYSKKSESSEEMLEMEISSILNRIREECGSICINELSIRNSP-NTMQ---ACGSKG 751
Query: 308 STVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEF 367
S +N Q+ +GQ + G R + R LP F +P + GFV F G+ EF
Sbjct: 752 SKINVSQMVACVGQQIVSGTRIPNGMDDRCLPHFRKGSRTPESKGFVRNSFFDGLTSPEF 811
Query: 368 FFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL 427
FFH ++GREGL+DTAVKT+ +GY+QR L+K LE L+V YD +VR+S++ ++Q YGED +
Sbjct: 812 FFHAVSGREGLVDTAVKTAETGYMQRRLMKALEDLSVQYDGSVRNSNMEVVQFSYGEDQI 871
Query: 428 D--VTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIF 485
D +++ + + FL+ + V L+ L +SG+ +
Sbjct: 872 DPVISEGDDPVNLERVFLQ-------AKSVFLHQL----------------NSGRFSHSL 908
Query: 486 SPHRTKFTMDLLEQWYQLDDKA---RKKYRKKFKACPQPLISTFQPDAHFGSISENLADS 542
P + D+++ +L K + K+F Q LI + + + F + +
Sbjct: 909 QPE----SCDVIDSLRELIPKGYPIERMINKRFVKSLQELIKS-KSEERF-----SFDGT 958
Query: 543 VVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAG 602
Y R V F+ M+ K + + PG VG +A QSIGEP TQMTL TFHFAG
Sbjct: 959 SFPYFSSR---DFVRTFFFMVSQKMMDLIIEPGTTVGAIAGQSIGEPGTQMTLKTFHFAG 1015
Query: 603 RGDMNVTLGIPRLREILMMATKAIKTP 629
MN+TLG+PRL+EI+ A I TP
Sbjct: 1016 VASMNITLGVPRLKEII-NAVCNISTP 1041
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 71/140 (50%), Gaps = 13/140 (9%)
Query: 868 LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 927
++ TDGI + ++ N + + GIEAA II E++ + +GI++
Sbjct: 1182 VINTDGIRCSSVTS------------NSVTEVEEVLGIEAARAQIIHEIEYTISNHGIKI 1229
Query: 928 DPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRA 986
DPRH+ L+AD MT+ G + R GI +++ S + +FE + + +A+ Q + D +
Sbjct: 1230 DPRHIMLLADTMTYRGEVFGITRFGISKMSRSTLMLASFEQTSDYLFEAAAQNKSDEICG 1289
Query: 987 PSARVMLGQECRQGTGLFQL 1006
S ++LG GTG L
Sbjct: 1290 VSESIILGIPICIGTGSIDL 1309
>gi|299755292|ref|XP_001828577.2| RNA polymerase II large subunit [Coprinopsis cinerea okayama7#130]
gi|298411158|gb|EAU93247.2| RNA polymerase II large subunit [Coprinopsis cinerea okayama7#130]
Length = 1745
Score = 225 bits (574), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 157/435 (36%), Positives = 229/435 (52%), Gaps = 46/435 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S + V Q + P+ P+ G++QD + K +LRDTFL N++ L +
Sbjct: 512 RAELSQIAWVPRQIVSPQANKPVMGIVQDTLCGIRKFTLRDTFLDWNHVQNIL---LWVP 568
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ P I KP PLWTGKQ+LS I P+ I R E S
Sbjct: 569 EWDGVVPTPAILKPKPLWTGKQILSLTI----PRGINIQRASENKSS------------- 611
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ V+D + I +GE + GI+DKK G++ GLVH V+ G E L + L +
Sbjct: 612 --NPVFDDGMLIENGEFIYGIVDKKIVGASAGGLVHVVFREKGPEATKQLFTGLQMIVNF 669
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + TK I +++ + +A L T P + L+E
Sbjct: 670 WLFHNGFSIGIGDTIADARTMEFITKNIAESKAKVAQVIEDANMDRLKTKPGMT---LRE 726
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
++ S + + +L+K ++ Q + L E NN++ MV +G+KGS +N
Sbjct: 727 SFES----------EVEGILNKARDSSGQYAQ-KHLKE---DNNVKQMVVAGSKGSFINI 772
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EG+R RTLP F + SP A GFV+ ++ G+ PQEFFFH M
Sbjct: 773 SQMSVCVGQQSVEGRRIPFGFRHRTLPHFTKDDFSPEARGFVENSYLRGLTPQEFFFHAM 832
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVT-- 430
AGREGLIDTAVKT+ +GY+QR LVK LE + V YD TVR+S LIQ +YGEDG+D
Sbjct: 833 AGREGLIDTAVKTAETGYIQRRLVKALEDVMVCYDGTVRNSLGDLIQFVYGEDGMDAAFI 892
Query: 431 KRQ-----YLTDKQF 440
++Q L+DK+F
Sbjct: 893 EKQNIETFALSDKEF 907
Score = 97.4 bits (241), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 71/106 (66%), Gaps = 3/106 (2%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
S+A+PGE G LAAQSIGEP+TQMTLNTFH+AG NVTLG+PRL+EI+ +AT IKTP
Sbjct: 1072 SIAHPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATN-IKTP 1130
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISP 675
S+ I P++ + A + + + ++ V V+I W + +P
Sbjct: 1131 SLTIHLQPEIAVAPELAKNVQQELAFTSLKTVTSAVEI--WYDPNP 1174
Score = 82.8 bits (203), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 80/146 (54%), Gaps = 2/146 (1%)
Query: 862 EKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 921
EK ++ +L+TDG N+ + + D + Y N+ + + G+EAA +++E++NV
Sbjct: 1319 EKGAEWILETDGTNLKGVMCLDGV-DSTRTYSNNCVEIFTVLGVEAARAALMKEIRNVIE 1377
Query: 922 VYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGR 980
G V+ RHL L+ D MTH GT + + R+GI R + + + +FE +E + +A+ G
Sbjct: 1378 FDGSYVNYRHLGLLCDVMTHRGTLMPITRHGINRADTGALMRCSFEETVEILMEAAAVGE 1437
Query: 981 EDSLRAPSARVMLGQECRQGTGLFQL 1006
+D + VM GQ GTG F +
Sbjct: 1438 KDDCHGIAENVMFGQMAPMGTGAFDV 1463
>gi|330795314|ref|XP_003285719.1| hypothetical protein DICPUDRAFT_149604 [Dictyostelium purpureum]
gi|325084350|gb|EGC37780.1| hypothetical protein DICPUDRAFT_149604 [Dictyostelium purpureum]
Length = 1755
Score = 225 bits (573), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 140/416 (33%), Positives = 213/416 (51%), Gaps = 35/416 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE +M V Q + P+ P+ G++QD ++ + RDTF+ R MN++ + +
Sbjct: 504 RAEVIEIMMVPRQIVSPQSNRPVMGIVQDTLLGSRLFTKRDTFIERDLVMNIL---MWLP 560
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + + PP I KP LWTGKQ+ S +I ++ +IR + + K+ G
Sbjct: 561 SWDGKVPPPAILKPKQLWTGKQLFSLIIPDIN-----LIR----FTSTHNDKEPNECSAG 611
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
DT V I GELL+GIL K+ G+ ++H V + HG + + +
Sbjct: 612 ------DTRVIIERGELLAGILCKRSLGAANGSIIHVVMNEHGHDTCRLFIDQTQTVVNH 665
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GFT+G+ D + + K T I+ A+ E A + P
Sbjct: 666 WLINRGFTMGIGDTIADAQTMEKVTLTISSAKNQVKELIIKAQNKQFECQP--------- 716
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
+ + F ++++ D ++ Q L E ANNL+ MV +G+KGS +N
Sbjct: 717 GKSVMETFEQKVNQVLNKARDTAGSSA-QNSLSE-------ANNLKAMVTAGSKGSFINI 768
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+ +GQ +EGKR RTLP F + P + GFV+ ++ G+ PQEFFFH M
Sbjct: 769 SQMMACVGQQNVEGKRVPFGFQSRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 828
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
GREGLIDTAVKTS +GY+QR LVK +E +++ YD TVR+S +IQ YGEDG+D
Sbjct: 829 GGREGLIDTAVKTSETGYIQRRLVKAMEDVSIKYDATVRNSLGDVIQFAYGEDGID 884
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 69/102 (67%), Gaps = 1/102 (0%)
Query: 566 KNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKA 625
K L +LA+PGE VG LAAQSIGEP+TQMTLNTFH+AG NVTLG+PRL+EI+ +A K
Sbjct: 1072 KFLQALAHPGEMVGALAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINIA-KQ 1130
Query: 626 IKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKI 667
+KTPS+ I P + + A + + T+A+V +I
Sbjct: 1131 VKTPSLTIYLKPHIARDMDCAKTVKSHLEYTTLANVTSATEI 1172
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 80/140 (57%), Gaps = 2/140 (1%)
Query: 868 LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 927
+L TDG+++ + + + D ++ NDI + GIEA +++E++ V + G V
Sbjct: 1324 ILDTDGVSLLEVMSHPDV-DHSRTTSNDIVEIIQVLGIEAVRNALLKELRAVISFDGSYV 1382
Query: 928 DPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRA 986
+ RHL+++AD MT+ G +A+ R+GI R+ + + +FE +E + A+M D ++
Sbjct: 1383 NYRHLAVLADVMTYRGHLMAITRHGINRVETGPLMRCSFEETVEILMDAAMFSETDDVKG 1442
Query: 987 PSARVMLGQECRQGTGLFQL 1006
+ ++LGQ GTG F++
Sbjct: 1443 VTENIILGQLPPLGTGSFEV 1462
>gi|58395824|gb|AAW72740.1| RNA polymerase II largest subunit [Gautieria otthii]
Length = 597
Score = 225 bits (573), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 152/441 (34%), Positives = 232/441 (52%), Gaps = 58/441 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S + V Q + P+ P+ G++QD + K +LRDTFL + N++ L +
Sbjct: 21 RAELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLDWNQVQNIL---LWVP 77
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + P I KP PLWTGKQ+LS I P+ I R+ + +
Sbjct: 78 DWDGTVPIPAIVKPKPLWTGKQLLSMCI----PRGIDISRNPDDHTA------------- 120
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ V D + I +G+++ G+++KK G++Q GLVH V+ G E + L + L +
Sbjct: 121 --NPVVDDGMLIENGDIIYGVVEKKTVGASQGGLVHVVFREKGPEACVGLFTGLQMVVNF 178
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + D++ IIN+ R+ TEA EI+ Q+
Sbjct: 179 WLFHNGFSIGIGDTIA----DKQTMLIINQ--RI-TEAKTKV--------HEILEEAYQD 223
Query: 253 AYASIP------QFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAK 306
P F ++++R+ D+ ++ + + NN++ MV +G+K
Sbjct: 224 RLRPSPGMTIRESFESKVNRELNVARDETGQDVQKSLKDD--------NNVKQMVVAGSK 275
Query: 307 GSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQE 366
GS +N Q++ +GQ +EGKR RTLP F + SP A GFV+ ++ G+ PQE
Sbjct: 276 GSFINISQMAVCVGQQSVEGKRIPFGFRHRTLPHFTKDDYSPEARGFVENFYLRGLTPQE 335
Query: 367 FFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDG 426
+FFH M GREGLIDTAVKT+ +GY+QR LVK LE + V YD TVR+S L+Q YGEDG
Sbjct: 336 YFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVCYDGTVRNSLGDLLQFTYGEDG 395
Query: 427 LD--VTKRQ-----YLTDKQF 440
+D +RQ +LTDK F
Sbjct: 396 MDGAFIERQSVDPYHLTDKSF 416
>gi|156835819|ref|XP_001642173.1| hypothetical protein Kpol_162p1 [Vanderwaltozyma polyspora DSM
70294]
gi|156112609|gb|EDO14315.1| hypothetical protein Kpol_162p1 [Vanderwaltozyma polyspora DSM
70294]
Length = 1311
Score = 225 bits (573), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 143/421 (33%), Positives = 220/421 (52%), Gaps = 45/421 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S L V Q + P+ P G++QD + KL+LRD+F+ + +N++Y +
Sbjct: 180 RAELSQLCAVPMQIVSPQSNKPCMGIVQDTLCGIRKLTLRDSFIEFDQVLNMLY---WVP 236
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + P I KP PLWTGKQ+LS I PK + R E + + K
Sbjct: 237 DWDGVIPQPAILKPKPLWTGKQILSIAI----PKGIHLQRFDEGTTMLSPK--------- 283
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
D + + G+++ G++DKK GS+ GL+H V G + + + K+
Sbjct: 284 ------DNGMLVIDGQIVFGVVDKKTVGSSSGGLIHVVTREKGPQVCAKMFGNIQKVVNF 337
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF+ G+ D + E ++ T+ I +A++ E +E
Sbjct: 338 WLLHNGFSTGIGDTIADGETMKEITETIAEAKKKVEEVT-------------------KE 378
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPF---PANNLQFMVESGAKGST 309
A A++ + + + +S D V +N+ G + NN++ MV +G+KGS
Sbjct: 379 AQANLLTAKHGMTLR-ESFEDNVVRFLNEARDKAGRLAEVNLNDTNNVKQMVSAGSKGSF 437
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+S +GQ +EGKR A RTLP F + SP + GFV+ ++ G+ PQEFFF
Sbjct: 438 INIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFF 497
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H M GREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S ++IQ +YGEDG+D
Sbjct: 498 HAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDSTTRNSLGNVIQFVYGEDGIDA 557
Query: 430 T 430
+
Sbjct: 558 S 558
Score = 145 bits (365), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 134/449 (29%), Positives = 212/449 (47%), Gaps = 69/449 (15%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
L S+ +PGE VGVLAAQSIGEP+TQMTLNTFHFAG VT G+PRL+EIL +A K +K
Sbjct: 736 LRSIVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVA-KNMK 794
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNY------ 681
TPS + P+ ++KA + ++ T L+ V + + P+P
Sbjct: 795 TPSSTVYLEPEYAIDQEKAKFIRSAIEHTT----LKSVTVASEIYYDPDPRSTVIPDDEE 850
Query: 682 --QMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQ 739
Q+ F + D+T K +D+ + +L LE+ RAA K++ + Q ++
Sbjct: 851 IIQLHFSLL-----DDET----EKALDN-QSPWLLRLEL---DRAAMNDKDLTMGQVGEK 897
Query: 740 MEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERM 799
+++ ++ D+ D D + +V + + D E +E+ M
Sbjct: 898 IKETFKN----------------DLFVIWSEDNADKLIIRCRVVRPKSLDAETEAEEDHM 941
Query: 800 SEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPS-N 858
++ E+ +I R V+D+ V YD+K +PS N
Sbjct: 942 LKKIENTMLESITLR-----------GVEDIER----VVMMKYDRK---------MPSEN 977
Query: 859 LFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKN 918
EK + +L+TDG+N+ + +D ++Y N + GIEA + REV N
Sbjct: 978 GAYEKVPEWVLETDGVNLLEVMTVTG-VDPTRIYTNSFIDITEVLGIEAGRAALYREVYN 1036
Query: 919 VFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASM 977
V A G V+ RH++L+ D MT G+ ++ R+G R N + + +FE +E + +A
Sbjct: 1037 VIASDGSYVNYRHMALLVDVMTTQGSLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGA 1096
Query: 978 QGREDSLRAPSARVMLGQECRQGTGLFQL 1006
D R S V+LGQ GTG F +
Sbjct: 1097 SAELDDCRGVSENVILGQMAPVGTGAFDV 1125
>gi|83320420|gb|ABC02837.1| RNA polymerase II largest subunit, partial [Rozella allomycis]
Length = 809
Score = 225 bits (573), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 153/450 (34%), Positives = 234/450 (52%), Gaps = 50/450 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAE L V +Q + P+ P G++QD + K + R++FL +A MN+V + +
Sbjct: 229 KAELVELALVPTQIVSPQSNKPCMGIVQDTLCGVRKFTRRESFLNKAMVMNIV---MWLP 285
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ E + P I KP+PLW+GKQ+ S +I PK ++ + +Y
Sbjct: 286 SWEGKLPRPCILKPVPLWSGKQIFSMII----PKG---------VNCVTFHSTHPDNEYS 332
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ + DT V I GEL+SGI+ KK G GL+H +++ HG+E A + + +
Sbjct: 333 DI-SPGDTKVLIEDGELISGIVCKKTVGPAAGGLIHVIYNEHGSEVAKQFFNGVQTVVNN 391
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNAL-----GLPLDTDPEIIS 247
+L GF++G+ D + DR+ K IN+ + E + GL L +P +
Sbjct: 392 WLLINGFSIGIGDTIA----DRQTMKNINETIAIAKEEVKATIQQAQKGL-LSCEPGMT- 445
Query: 248 SQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKG 307
L+E F +++++ D + Q L E NN++ MV +G+KG
Sbjct: 446 --LRET------FESKVNKSLNKARDSAGKSA-QTSLKE-------QNNVKQMVVAGSKG 489
Query: 308 STVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEF 367
S +N Q++ +GQ +EGKR RTLP F + P + GFV+ ++ G+ PQEF
Sbjct: 490 SYINISQMTACVGQQNVEGKRIPFGFRYRTLPHFTKGDYGPESRGFVENSYLRGLTPQEF 549
Query: 368 FFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL 427
FFH M GREGLIDTAVKT+ +GY+QR LVK LE + + YD TVR++ +IQ YGEDG+
Sbjct: 550 FFHAMGGREGLIDTAVKTAETGYIQRKLVKALEDVMIKYDGTVRNALGEIIQFKYGEDGM 609
Query: 428 DVTK--RQYLTDKQFSFLEDNIKWICSYKV 455
D K +Q L + +N K+ YKV
Sbjct: 610 DAVKIEKQSLDSMRL----NNKKFEIKYKV 635
>gi|21280517|gb|AAM45151.1|AF395110_1 RNA polymerase II largest subunit [Naegleria gruberi]
Length = 1590
Score = 225 bits (573), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 145/427 (33%), Positives = 223/427 (52%), Gaps = 45/427 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAE L V + P+ P+ L+QD +++ +KL+ RD F+ + MN + + ++
Sbjct: 431 KAELLELTMVPRNIITPQSNRPVIALVQDTLLAASKLTRRDVFIAKDLMMNCL---MHLI 487
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVI--INLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ + + P I KP PLWTGKQ+ + ++ +NL + H +L DKK
Sbjct: 488 DFDGKLPVPAILKPKPLWTGKQLFTFLLPKVNL---ENTSSTHEDLT----DKKDH---- 536
Query: 131 YGLVHAV--WDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAK 188
L H + +DT V I GEL+SG+LDKK GS+ L+H + + G L +
Sbjct: 537 --LDHDIPEFDTKVLIDRGELVSGVLDKKSLGSSHGSLIHIIVNEKGVNEGKKFLGQCQR 594
Query: 189 LFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISS 248
+ +L GF++G+ D + + + + I KA + D ++I
Sbjct: 595 VINHWLINRGFSIGIGDTIADKATMEQIEETIRKAEK----------------DVKLIVK 638
Query: 249 QLQEAYASIPQFRAQ----IDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESG 304
QE + RA+ I + +++ ++KV N + + NN++ MV +G
Sbjct: 639 DAQEG-----KLRAEAGRTIQQSFENQVNKVLNKAREDAGNKAKKSLKDDNNIKSMVTAG 693
Query: 305 AKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQP 364
+KGS +N QI +GQ +EGKR RTLP F + P + GFV ++ G+ P
Sbjct: 694 SKGSYINISQIIACVGQQNVEGKRIPYGFRNRTLPHFAQDDHGPESRGFVANSYLRGLTP 753
Query: 365 QEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGE 424
QEFFFH M GREGLIDTAVKTS +GY+QR L+K +E + V YD TVRD+ +++Q LYGE
Sbjct: 754 QEFFFHTMGGREGLIDTAVKTSETGYIQRRLIKAMEDIMVKYDGTVRDAQGNVVQFLYGE 813
Query: 425 DGLDVTK 431
DG+D K
Sbjct: 814 DGMDAHK 820
Score = 143 bits (361), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 132/441 (29%), Positives = 212/441 (48%), Gaps = 40/441 (9%)
Query: 571 LANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPS 630
LA PGE VG +AAQSIGEP+TQMTLNTFHFAG NVTLG+PRL+E+L +A K IKTP
Sbjct: 1023 LAQPGEMVGSVAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKELLNVA-KNIKTPG 1081
Query: 631 MEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPH---MNYQMKFCF 687
+ I + +KA + + + T+ V I PEP + +F
Sbjct: 1082 LTIYLNNEYIGDFEKAKMVKEDLEYTTLGHVTAAASIV----YDPEPANSVIEEDREFIE 1137
Query: 688 IPAHMYRDKTSVKPSKIIDHFERKF-LKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVED 746
+D T+V S ++ + +F L ++ ++ AQ K + E+ ++ + D
Sbjct: 1138 ELLEELKD-TAVLDSTTLNPWSLRFELDKMMMSDTLTMAQVAKKIQ-EEFQNDITCFYSD 1195
Query: 747 DEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDD 806
D A + V + D++ E+DA + ++P DE EED
Sbjct: 1196 D------NADKLILVVRIHKDDKEKEKDAQVA------------KDPSDEVLRKLEEEDI 1237
Query: 807 NTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNLFEEKESK 866
S + ++E + +K + + + DKK +F S + K+
Sbjct: 1238 ENSTVEFLRRLESNMLNELALKGYKDLKKVFLREENDKK-------VFSSSGVATVKQ-- 1288
Query: 867 HLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIE 926
+L T+G N+ + + + +D ND++ + GIEA ++RE++ V G
Sbjct: 1289 WVLDTEGCNLLAVLSHPY-VDHTITTSNDVNEILDVLGIEACRNALMREMRKVIEFDGSY 1347
Query: 927 VDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLR 985
V+ RHL+++ D MTH G +A+ R GI R + + + +FE +E + +A+ D+L+
Sbjct: 1348 VNYRHLAILCDVMTHRGGLMAITRRGINRSDTGPLMRCSFEETVEILIEAATFADTDTLK 1407
Query: 986 APSARVMLGQECRQGTGLFQL 1006
SA VM+GQ GTG F L
Sbjct: 1408 GVSANVMVGQLAPIGTGCFGL 1428
>gi|169780898|ref|XP_001824913.1| DNA-directed RNA polymerase III subunit RPO31 [Aspergillus oryzae
RIB40]
gi|83773653|dbj|BAE63780.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391867224|gb|EIT76474.1| RNA polymerase III, large subunit [Aspergillus oryzae 3.042]
Length = 1447
Score = 225 bits (573), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 186/643 (28%), Positives = 294/643 (45%), Gaps = 78/643 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + PK+G P+ IQD + + LS +D F R + + L +L
Sbjct: 530 RAEAMELMGVKNNLATPKNGEPIISAIQDFISAAYILSSKDNFFDRRSFTQI---CLYML 586
Query: 73 NTEIR--TLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDK--KQFGS 128
E R PP + KP LWTGKQV + +++ D V++ LD +++
Sbjct: 587 GPETRFDLPPPAVLKPQMLWTGKQVFN-ILMRPNKDDPVMVN--------LDAACREYKP 637
Query: 129 TQYGLVHAV--WDTHVTIRHGELLSGILDKKQFGSTQY-GLVHAVWDTHGAEHAISLLSC 185
+ G + D + IR+ E++ G++DK GS + + + + G A ++
Sbjct: 638 PKDGRPKDLDPKDGWLVIRNSEVMCGVMDKATIGSGKKDNVFYVMLRDFGPPAAAEGMNR 697
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEI 245
L++L + +GF++G+ D+ ++ + + ++ A E L+T P
Sbjct: 698 LSRLSARWFTNMGFSIGITDVYPSEKLLQSKHDLVETAYAQCDEVIAQYKAGTLETFPGC 757
Query: 246 ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGA 305
Q E S +L KV C+ + + + N+ M SG+
Sbjct: 758 DELQTMENKLS-------------GILSKVRQQAGDECIAQ--LSKY--NSPLIMATSGS 800
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS++N Q+ L+GQ + G+R RTLP F P + GFV F +G++P
Sbjct: 801 KGSSINVSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNARQPPSKGFVRNSFFSGLEPY 860
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EF FH M+GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR+S ++Q YG+D
Sbjct: 861 EFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSSRYDDTVRNSSGHIVQFQYGDD 920
Query: 426 GLDVT-----------KRQYLTDKQFSFLED--NIKWICSYKVILNLLKKHPLSLALLLL 472
LD R ++ + ++ D +++ +V +L K L L
Sbjct: 921 KLDPVDMEGKAKPVHFDRTFIHSEATTYDNDERSLQPAEIMEVCEEMLSKERAKLVRKDL 980
Query: 473 LTFKSSGKPNFIFSPHRTKFTMDLLEQWYQ-LDDKARKKYRKKFKACPQPLISTFQPDAH 531
L + + + D LE Q + KA K + P S Q H
Sbjct: 981 LDVELGYMDRSNHGVDQFESARDFLESIQQYVSTKADKLISRGGDIDPSDERSQ-QGLNH 1039
Query: 532 FGSISEN-----LADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSI 586
G ++E ++ ++KY K + + H VG + AQSI
Sbjct: 1040 TGKLTEKTLRTFISACLMKYKKAQVEPGHA---------------------VGAVGAQSI 1078
Query: 587 GEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
GEP TQMTL TFHFAG M++T G+PR++EI+ A+K I TP
Sbjct: 1079 GEPGTQMTLKTFHFAGVAGMSITQGVPRIKEII-NASKEISTP 1120
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 893 VNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNG 952
N++ M GIEAA I+RE+ V +++DPRH+ L+AD MT+ G + + R G
Sbjct: 1297 TNNVMEMREVLGIEAARTTIVREISEVMK--DMDIDPRHMQLLADVMTYKGEVLGITRFG 1354
Query: 953 I-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNR 1009
+ ++ S +Q +FE + + A GR D + S +++G+ GTG ++ R
Sbjct: 1355 LAKMRDSVLQLASFEKTADHLFDAGGAGRTDLVEGVSECIIMGKTVSLGTGAMEVVRR 1412
>gi|397135808|gb|AFO11399.1| RNA polymerase I, partial [Ogataea methanolica]
Length = 870
Score = 225 bits (573), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 144/424 (33%), Positives = 221/424 (52%), Gaps = 43/424 (10%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S+ +AE S + V Q + P+ P+ G++QD + K++LRDTF+ + MN+ +
Sbjct: 307 SYETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDTFVEYDQVMNMCF-- 364
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR-HGELLSGILDKKQFG 127
I + P I KP PLWTGKQ++S I PK + R G LLS
Sbjct: 365 -WIPQWDGVVPQPAILKPKPLWTGKQMMSLCI----PKGIFLQRLDGSLLSP-------- 411
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
D+ + I GE++ G+++K G+T GL+H V G + + +
Sbjct: 412 ----------KDSGMLIVDGEIMFGVVNKATVGATAGGLIHTVMREKGPQVCAQMFGNIQ 461
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIIS 247
K+ +L GF++G+ D + E + T+ I A+ E +A L+ +P +
Sbjct: 462 KVVNYWLLHNGFSIGIGDAIADTETMKTITETIGVAKEKVQEVILDAQNNILEPEPGMT- 520
Query: 248 SQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKG 307
R +++ +L++ + + L E ANN++ MV +G+KG
Sbjct: 521 ------------VRESFEQKVSKILNEARDTAGKSA-ESSLKE---ANNVKQMVTAGSKG 564
Query: 308 STVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEF 367
S +N Q+S +GQ +EGKR S R+LP F + S + GFV+ ++ G+ PQEF
Sbjct: 565 SYINISQMSACVGQQIVEGKRINFGFSDRSLPHFTKDDYSAESKGFVENSYLRGLTPQEF 624
Query: 368 FFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL 427
FFH MAGREGLIDTAVKT+ +GY+QR L+K LE + VHYD T R+S +IQ +YGEDG+
Sbjct: 625 FFHAMAGREGLIDTAVKTAETGYIQRRLLKALEDIMVHYDGTTRNSLGDIIQFIYGEDGI 684
Query: 428 DVTK 431
D T+
Sbjct: 685 DGTQ 688
>gi|224060165|ref|XP_002300065.1| predicted protein [Populus trichocarpa]
gi|222847323|gb|EEE84870.1| predicted protein [Populus trichocarpa]
Length = 1394
Score = 225 bits (573), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 193/649 (29%), Positives = 296/649 (45%), Gaps = 82/649 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+ EA LM V + PK+G L QD + S ++ +DTF RA + +C
Sbjct: 516 RTEAFLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRA-----AFSLMCSY 570
Query: 73 ---NTEIRTLP-PTIWKPMPLWTGKQVLST---------VIINLTPKDKVIIRHGELLSG 119
++ LP P++ KP+ LWTGKQ+ S V +NL K+K R +
Sbjct: 571 MNDGMDLVDLPTPSVLKPIELWTGKQLFSVLLRPHANVRVYVNLILKEKNYSRPNK---- 626
Query: 120 ILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEH 178
+ K+ T D +V R+ EL+SG L K G+ + GL + + A
Sbjct: 627 --EHKKERETM-----CPNDGYVYFRNSELISGQLGKATLGNGNKDGLYSILLRDYNAYA 679
Query: 179 AISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLP 238
A + ++ LAKL ++ GF++G+ D+ ++ ++ K I+ R CN L
Sbjct: 680 AATCMNRLAKLSARWIGNHGFSIGIDDVQPGKKLIDEKGKTISNGYR-----HCNKL--- 731
Query: 239 LDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQ 298
D L+ + +I + L+K+ VC+ E P
Sbjct: 732 -IADYNGGRLALKSGCDATQTLETEITER----LNKLREEAGDVCMKELHWRNSPL---- 782
Query: 299 FMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRF 358
M + G+KGS +N Q+ +GQ + G R R+LP F +P A GFV F
Sbjct: 783 IMSQCGSKGSPINISQMIACVGQQSVGGSRAPDGFIDRSLPHFPRKSKTPAAKGFVANSF 842
Query: 359 MTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLI 418
+G+ EFFFH M GREGL+DTAVKT+ +GY+ R L K LE L V YD TV+D+ ++
Sbjct: 843 YSGLSATEFFFHTMGGREGLVDTAVKTADTGYMARRLSKGLEDLCVQYDNTVQDAGGGIV 902
Query: 419 QVLYGEDGLD--VTKRQYLTDKQFSFLEDNIKWICSYK------------VILNLLKKHP 464
Q LYG+DGLD + + + F L +K C + ++ +LL KH
Sbjct: 903 QFLYGDDGLDPAIMEGKAGVPLNFDRLFMKVKATCGAEEDEYLSPSDISNIVQSLLLKHN 962
Query: 465 LSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLIS 524
+L + +F+ S +F+ + LE +L D + + K
Sbjct: 963 GTLDGICSESFRKS-LSSFLGDQAKR------LECLMKLVDGVEVENFENIKNV------ 1009
Query: 525 TFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQ 584
IS+N + + + G T+ ++ F + + PG +G + AQ
Sbjct: 1010 -----EGLTGISKN-TEKIAQKVSGITE-KQLEVFLKTCLDRYVWKRIEPGTAIGAIGAQ 1062
Query: 585 SIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEI 633
SIGEP TQMTL TFHFAG MN+T G+PR++EI+ A K I TP + +
Sbjct: 1063 SIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGA-KRISTPIITV 1110
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 70/125 (56%), Gaps = 1/125 (0%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D K N I + T GIEAA + II E+K +G+ +D RH+ L+AD MT G
Sbjct: 1270 VDGRKTKSNHIIEVQETLGIEAARKCIIDEIKGTMESHGMSIDIRHMMLLADVMTSRGVV 1329
Query: 946 VAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
+ + R GI +++ S + +FE + + AS++G++D + S +++G GTG+
Sbjct: 1330 LGITRFGIQKMDKSVLMLASFEKTSDHLFNASVKGKDDKIEGVSECIIMGIPVAIGTGVL 1389
Query: 1005 QLRNR 1009
+++ R
Sbjct: 1390 KIQQR 1394
>gi|120561209|gb|ABM26990.1| RNA polymerase II largest subunit, partial [Phragmidium sp. MB]
Length = 1013
Score = 225 bits (573), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 142/422 (33%), Positives = 216/422 (51%), Gaps = 39/422 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE + + V + P+ P+ G++QD + K +LRD F+ R N++ L +
Sbjct: 434 RAELAQIAWVPRNIVSPQANKPVMGIVQDTLCGVRKFTLRDCFMDRDFVQNIL---LWVP 490
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ PP I KP PLWTGKQ+LS I PK + R E + I
Sbjct: 491 GWDGVVPPPAILKPKPLWTGKQILSMCI----PKGINLFRDDENQTSI------------ 534
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
V D + I GE++ G++DKK G++Q G++H ++ G E L S + +
Sbjct: 535 ---PVADKGMWIEDGEIIYGVVDKKTVGASQGGIIHVIFREKGPEVTRGLFSGIQMVVNY 591
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + + T I+ A+R ++ A L +P + +
Sbjct: 592 WLLHHGFSIGIGDTVPDKATMEAITNFISDAKREVSDVIIAAQEDKLLPEPGMTIRE--- 648
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
F A+++R D + Q + NN++ MV +G+KGS +N
Sbjct: 649 ------SFEAKVNRALNMARDNAGRSAEQSLKDD--------NNVKQMVTAGSKGSFINI 694
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EGKR RTLP F + SP + GFV+ ++ G+ PQEFFFH M
Sbjct: 695 SQMSACVGQQSVEGKRIPYGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPQEFFFHAM 754
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKR 432
AGREGLIDTAVKT+ +GY+QR L+K LE + V YD TVR+S ++Q +YGEDG+D
Sbjct: 755 AGREGLIDTAVKTAETGYIQRRLLKALEDVMVTYDGTVRNSLGDIVQFVYGEDGVDGGTV 814
Query: 433 QY 434
+Y
Sbjct: 815 EY 816
>gi|83320466|gb|ABC02860.1| RNA polymerase II largest subunit, partial [Synchytrium
macrosporum]
Length = 808
Score = 225 bits (573), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 152/423 (35%), Positives = 213/423 (50%), Gaps = 42/423 (9%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S+ AE L V Q + P+ +P+ G++QD + K + RDTFL MNL
Sbjct: 424 SYETAAEIVELCIVPKQIVSPQKNAPVMGIVQDTLCGVRKFTKRDTFLDMDIMMNL---- 479
Query: 69 LCILNTEIRTLP-PTIWKPMPLWTGKQVLSTVI--INLTPKDKVIIRHGELLSGILDKKQ 125
L + TLP P I KP+PLWTGKQ +S +I INLT K+
Sbjct: 480 LMWVPDWDGTLPTPCIIKPIPLWTGKQAMSLIIPNINLT-----------AYHAAHPDKE 528
Query: 126 FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYG-LVHAVWDTHGAEHAISLLS 184
G G DT V I HGEL+ GIL KK GS+ G ++H HG E A +
Sbjct: 529 VGDNSPG------DTKVLIEHGELVMGILCKKTVGSSAGGGIIHTAVMEHGPETAKKFFN 582
Query: 185 CLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPE 244
++ +L GF++G+ D + I +A+ +E A L+ P
Sbjct: 583 AAQRVVNYWLLHRGFSIGIGDTIADARSMTDINNTIQQAKTQVSEIIAMAQQGRLEAQPG 642
Query: 245 IISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESG 304
+ Q F A+++ + + DK Q LP NN++ MV +G
Sbjct: 643 MTIRQ---------SFEAKVNHELNNARDKA-GKAAQDSLPS-------FNNVKQMVVAG 685
Query: 305 AKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQP 364
+KGS +N Q++ +GQ +EG+R RTLP F+ + SP A GFV+ ++ G+ P
Sbjct: 686 SKGSYINISQMTACVGQQNVEGRRIPYGFQYRTLPHFVKDDHSPEARGFVENSYLRGLTP 745
Query: 365 QEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGE 424
QEFFFH M GREGLIDTAVKT+ +GY+QR LVK LE + V YD TVR++ ++Q YGE
Sbjct: 746 QEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNAQGDVVQFCYGE 805
Query: 425 DGL 427
DG+
Sbjct: 806 DGM 808
>gi|413915236|gb|AFW21480.1| RNA polymerase II largest subunit [Periglandula ipomoeae]
Length = 1760
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 153/424 (36%), Positives = 217/424 (51%), Gaps = 49/424 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + + + PL G++QD + K+ RDTF+ + MN++ L +
Sbjct: 510 RAEVKELCLVPNNIVSTQKNGPLMGIVQDSLAGAYKICRRDTFIDKEMVMNMM---LWVP 566
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N + P I KP P WTGKQ++S VI PK+ I H SG D
Sbjct: 567 NWDGVIPQPAILKPRPRWTGKQLISMVI----PKE--ISLHSPESSGGQDNADI------ 614
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ DT + I+ GELL G+L KK GS G+VH ++ G E A++ L+ + ++ T
Sbjct: 615 ---PLKDTGLLIQSGELLYGLLKKKNIGSAAGGIVHLSYNELGPEGAMAFLNGVQQVVTY 671
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKAR----RLGTEAACNALGLPLDTDPEIISS 248
+L G ++G+ D + ++ K I+ + RL +A N L
Sbjct: 672 WLLNNGHSIGIGDTVPDKQTIEKVQVHIDTQKAEVARLTAQATANEL------------- 718
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKV---TNNINQVCLPEGLIEPFPANNLQFMVESGA 305
EA + RA + + L+ Q L + +NN M ESG+
Sbjct: 719 ---EALPGM-NVRATFENKVSMALNSARDQAGTTTQRSLKD-------SNNAVTMAESGS 767
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS++N Q++ L+GQ +EGKR RTLP F + SP A GFV+ ++ G+ P
Sbjct: 768 KGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPS 827
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EFFFH MAGREGLIDTAVKT+ +GY+QR LVK LE L+ YD TVR+S +IQ LYGED
Sbjct: 828 EFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSERYDGTVRNSLGDIIQFLYGED 887
Query: 426 GLDV 429
GLD
Sbjct: 888 GLDA 891
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/66 (72%), Positives = 54/66 (81%), Gaps = 1/66 (1%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
S +PGE VGVLAAQSIGEP+TQMTLNTFHFAG NVTLG+PRL+EIL +A K IKTP
Sbjct: 1073 SFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLA-KDIKTP 1131
Query: 630 SMEIPF 635
SM + F
Sbjct: 1132 SMAVYF 1137
Score = 83.6 bits (205), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 70/122 (57%), Gaps = 1/122 (0%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D + Y ND+ + +GIEAA +++E+ NV A G V+ RH++L+ D MT+ G+
Sbjct: 1346 VDPTRTYTNDLWQIVEVFGIEAARSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGSI 1405
Query: 946 VAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
A+ R+GI R + + + +FE +E + +A+ G D R S VMLGQ GTG F
Sbjct: 1406 SAVTRHGINRADTGALMRCSFEETVEILLEAAATGELDDCRGISENVMLGQLAPMGTGNF 1465
Query: 1005 QL 1006
+
Sbjct: 1466 DV 1467
>gi|397135969|gb|AFO11479.1| RNA polymerase I, partial [Trigonopsis variabilis]
Length = 871
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 148/425 (34%), Positives = 222/425 (52%), Gaps = 53/425 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+ E S + V Q + P+ P+ G++QD + K+++RD F+ E MN++ + +
Sbjct: 311 RTELSQICMVPLQIISPQSNRPVMGIVQDTLCGVRKMTVRDNFIGYQETMNIM---MWVP 367
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + PP + KP PLWTGKQ+LS VI PK + R E + +++ K
Sbjct: 368 DWDGIIPPPAVLKPKPLWTGKQILSMVI----PKGINLQRFDEGTT-LMNPK-------- 414
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
D + I +GE++ G++DKK G+T GLVH + G + +
Sbjct: 415 ------DNGMLIENGEIMFGVVDKKTVGATAGGLVHIIMREKGPYICRDFFGGVQTVVNY 468
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARR----LGTEAACNALGLPLDTDPEIISS 248
+L GF++G+ D + + R TK I++A++ L EA N L PE
Sbjct: 469 WLLHNGFSIGIGDTIADADTMRHITKTIDEAKQQVQNLINEAQHNVLA------PEP-GM 521
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPA---NNLQFMVESGA 305
L+E++ KV+ +NQ G NN++ MV +G+
Sbjct: 522 TLRESFEH-----------------KVSRALNQARDTAGRSAEMSLKNDNNVKQMVIAGS 564
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS +N Q+S +GQ +EGKR RTLP F + SP + GF++ ++ G+ PQ
Sbjct: 565 KGSFINISQMSACVGQQIVEGKRIPFGFKDRTLPHFTKDDYSPESKGFIENSYLRGLTPQ 624
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EFFFH MAGREGLIDTAVKT+ +GY+QR LVK LE ++V YD TVR+S +IQ +YGED
Sbjct: 625 EFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVSVEYDSTVRNSLGDIIQFIYGED 684
Query: 426 GLDVT 430
G+D T
Sbjct: 685 GIDGT 689
>gi|310789907|gb|EFQ25440.1| RNA polymerase Rpb1 [Glomerella graminicola M1.001]
Length = 1753
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 142/417 (34%), Positives = 217/417 (52%), Gaps = 39/417 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + P+ PL G++QD + KL RD FL++ + MN++ L +
Sbjct: 511 RAEVKELCLVPINIVSPQRNGPLMGIVQDTLAGAYKLCRRDVFLSKEQVMNIM---LWVP 567
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N + PP I +P P WTGKQ++S + N+ L D K+
Sbjct: 568 NWDGIIPPPAIVRPRPRWTGKQIMSLAVPNIVS-----------LHSAPDSKED------ 610
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ + D + I+ G+++ G+L KK G+ G+VH V++ HG E A+ L+ + ++
Sbjct: 611 --NPLKDEGLLIQSGQIMYGLLSKKNIGAASGGIVHIVYNEHGPEAAMKFLNGVQQVVNY 668
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + + K I++ + E A L+ P + ++E
Sbjct: 669 WLLHNGFSIGIGDTIPDKVTIEKVQVHIDEHKAEVEEYTRQATANELEPLPGM---NIRE 725
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
F +++ + + DK Q L + NN M SG+KGS++N
Sbjct: 726 T------FESKVSKALNTARDKA-GTTTQKSLKD-------LNNAVTMASSGSKGSSINI 771
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q++ L+GQ +EGKR RTLP F + SP A GFV+ ++ G+ P EFFFH M
Sbjct: 772 SQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAM 831
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
AGREGLIDTAVKT+ +GY+QR LVK LE ++ YD TVR+S ++Q LYGEDGLD
Sbjct: 832 AGREGLIDTAVKTAETGYIQRRLVKALEDVSAKYDGTVRNSLGDILQFLYGEDGLDA 888
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 68/105 (64%), Gaps = 1/105 (0%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
+ +PGE VGV+AAQSIGEP+TQMTLNTFHFAG NVTLG+PRL+EIL +A + IKTP
Sbjct: 1071 AFVSPGEMVGVIAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLA-QNIKTP 1129
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEIS 674
SM + + ++ A L ++ T+ V +I EI+
Sbjct: 1130 SMVVYLSGEDNASQEAAKALRSTVEHTTLRSVTAVTEIYYDPEIT 1174
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 69/122 (56%), Gaps = 1/122 (0%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D N+ Y N + + +GIEAA ++RE+ V A G V+ RHL+L+ D MT+ GT
Sbjct: 1346 VDSNRTYTNHLWQVVEVFGIEAARAALVRELTQVLAFDGSYVNHRHLALLCDVMTYRGTI 1405
Query: 946 VAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
A+ R+GI R + + + +FE +E + +A+ G D R S VMLGQ GTG F
Sbjct: 1406 SAVTRHGINRADTGALMRCSFEETVEILLEAAAVGELDDCRGISENVMLGQMAPMGTGHF 1465
Query: 1005 QL 1006
+
Sbjct: 1466 DV 1467
>gi|328849370|gb|EGF98552.1| hypothetical protein MELLADRAFT_50989 [Melampsora larici-populina
98AG31]
Length = 1786
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 144/422 (34%), Positives = 218/422 (51%), Gaps = 39/422 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE + + V + P+ P+ G++QD + K +LRD F+ R N++ L +
Sbjct: 518 RAELAQIAWVPRNIVSPQANKPVMGIVQDTLCGVRKFTLRDCFMDRDFVQNIL---LWVP 574
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ PP I KP PLWTGKQ+LS I PK + R E + I
Sbjct: 575 GWDGVVPPPAILKPKPLWTGKQILSMCI----PKGINLFRDDENQTSI------------ 618
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
V D + I GE++ G++DKK G++Q G++H ++ G E L S + +
Sbjct: 619 ---PVADKGMWIEDGEIIYGVVDKKTVGASQGGIIHVIFREKGPEVTRGLFSGIQMVVNY 675
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + + TK I++A+ A L +P + ++E
Sbjct: 676 WLLHHGFSIGIGDTVPDKGTMETITKFISEAKLEVANVISMAQEDKLQPEPGMT---IRE 732
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
+ F A+++R D + Q + NN++ MV +G+KGS +N
Sbjct: 733 S------FEAKVNRALNMARDNAGRSAEQSLKDD--------NNVKQMVTAGSKGSFINI 778
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EGKR RTLP F + SP + GFV+ ++ G+ PQEFFFH M
Sbjct: 779 SQMSACVGQQSVEGKRIPYGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPQEFFFHAM 838
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKR 432
AGREGLIDTAVKT+ +GY+QR LVK LE + V YD TVR+S ++Q +YGEDG+D
Sbjct: 839 AGREGLIDTAVKTAETGYIQRRLVKALEDVMVAYDGTVRNSLGDIVQFVYGEDGVDGGTV 898
Query: 433 QY 434
+Y
Sbjct: 899 EY 900
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 51/64 (79%), Gaps = 1/64 (1%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
SLA PGE G LAAQSIGEP+TQMTLNTFH+AG NVTLG+PRL+EI+ +A IKTP
Sbjct: 1076 SLAAPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVALN-IKTP 1134
Query: 630 SMEI 633
S+ +
Sbjct: 1135 SLTV 1138
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 83/146 (56%), Gaps = 2/146 (1%)
Query: 862 EKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 921
+++++ +L+TDGIN+ + + + + N + M + GIEAA +++E++NV
Sbjct: 1320 DRKTEWVLETDGINLKKVLCVDGVDPVRTVSNNCVEIM-TVLGIEAARASVLKELRNVIE 1378
Query: 922 VYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGR 980
G V+ RHL+L+ D MT+ G+ +A+ R+GI R + + + +FE +E + A+ G
Sbjct: 1379 FDGSYVNYRHLALLCDLMTNRGSLMAITRHGINRADTGPLMRCSFEETVEILMDAAATGE 1438
Query: 981 EDSLRAPSARVMLGQECRQGTGLFQL 1006
+D + V+LGQ GTG F +
Sbjct: 1439 KDHCTGVAENVLLGQLAPMGTGAFDV 1464
>gi|197723718|gb|ACH72769.1| RNA polymerase II largest subunit [Kabatana sp. JI-2008]
Length = 909
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 178/589 (30%), Positives = 269/589 (45%), Gaps = 82/589 (13%)
Query: 14 AEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCILN 73
AE L + +Q + P+ P+ GL+QD +I +L+ RD+F E M L+++
Sbjct: 384 AELKELAFLPTQIVSPQGNKPVMGLVQDTLIGVRRLTSRDSFFNEQEVMALMFKC----- 438
Query: 74 TEIRTLPPTIWKPMPLWTGKQVLSTVI--INL--TPKDKVIIRHGELLSGILDKKQFGST 129
++ L P I +P+ L++GKQ+ S + IN D E L G + S
Sbjct: 439 QNVKKLKPVIKRPLRLYSGKQLFSLNLPEINFHGVTNDPDFGDSIEKLDGWNLGSESKSK 498
Query: 130 Q---YGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCL 186
Q Y L + D+ V IR G+LL G +DKK G+TQ G++H + + HG E ++
Sbjct: 499 QQEMYSLHKRILDSKVVIRRGQLLLGAMDKKSVGNTQGGIIHVIKNDHGCESVVNFFDGT 558
Query: 187 AKLFTVYLQ-RVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEI 245
+L YL F+ G+ D + RK I E A +G EI
Sbjct: 559 QRLVNAYLTFYSSFSCGIGDTIADSYTMRKIVSSI--------EGAKKEVG-------EI 603
Query: 246 ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGA 305
I S Q + + ++S ++ N V +NN++ MV +G+
Sbjct: 604 IESARQGRLERVAGL--TMKSTFESKINLALNRARDVSGRSAQESLAVSNNVKQMVLAGS 661
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS +N Q++ +GQ +EG+R RTLP F ++ P + GFV+ F++G+ P+
Sbjct: 662 KGSFINISQVTACVGQQNVEGQRIPFAFRDRTLPHFSKFDYGPESRGFVENSFLSGLTPE 721
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EF+FH M GREGLIDTA+KT+ +GY+QR LVK +E V YD +VRD Q LYG D
Sbjct: 722 EFYFHTMGGREGLIDTAIKTAETGYIQRRLVKAMEDCRVSYDGSVRDGSGRAYQFLYGGD 781
Query: 426 GLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIF 485
G D T FLE N ++ +V L PL+ ++ + S
Sbjct: 782 GFDAT-----------FLEHN--FLDDRRVTL------PLNFERIIFNAERGSSS----- 817
Query: 486 SPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSV-- 543
+ T+ +LLE + KF +CP+ S LAD++
Sbjct: 818 AQRATEAREELLEFLNSI----------KFLSCPKF------------SAGSTLADAINF 855
Query: 544 ---VKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEP 589
KY K + + + D + K + E VG LA+QSIGEP
Sbjct: 856 FISXKYLK-NVSXTGIREITDEVKKKISRGIVAFNEMVGTLASQSIGEP 903
>gi|238504894|ref|XP_002383676.1| DNA-directed RNA polymerase III largest subunit, putative
[Aspergillus flavus NRRL3357]
gi|220689790|gb|EED46140.1| DNA-directed RNA polymerase III largest subunit, putative
[Aspergillus flavus NRRL3357]
Length = 1436
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 186/643 (28%), Positives = 294/643 (45%), Gaps = 78/643 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + PK+G P+ IQD + + LS +D F R + + L +L
Sbjct: 530 RAEAMELMGVKNNLATPKNGEPIISAIQDFISAAYILSSKDNFFDRRSFTQI---CLYML 586
Query: 73 NTEIR--TLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDK--KQFGS 128
E R PP + KP LWTGKQV + +++ D V++ LD +++
Sbjct: 587 GPETRFDLPPPAVLKPQMLWTGKQVFN-ILMRPNKDDPVMVN--------LDAACREYKP 637
Query: 129 TQYGLVHAV--WDTHVTIRHGELLSGILDKKQFGSTQY-GLVHAVWDTHGAEHAISLLSC 185
+ G + D + IR+ E++ G++DK GS + + + + G A ++
Sbjct: 638 PKDGRPKDLDPKDGWLVIRNSEVMCGVMDKATIGSGKKDNVFYVMLRDFGPPAAAEGMNR 697
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEI 245
L++L + +GF++G+ D+ ++ + + ++ A E L+T P
Sbjct: 698 LSRLSARWFTNMGFSIGITDVYPSEKLLQSKHDLVETAYAQCDEVIAQYKAGTLETFPGC 757
Query: 246 ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGA 305
Q E S +L KV C+ + + + N+ M SG+
Sbjct: 758 DELQTMENKLS-------------GILSKVRQQAGDECIAQ--LSKY--NSPLIMATSGS 800
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS++N Q+ L+GQ + G+R RTLP F P + GFV F +G++P
Sbjct: 801 KGSSINVSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNARQPPSKGFVRNSFFSGLEPY 860
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EF FH M+GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR+S ++Q YG+D
Sbjct: 861 EFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSSRYDDTVRNSSGHIVQFQYGDD 920
Query: 426 GLDVT-----------KRQYLTDKQFSFLED--NIKWICSYKVILNLLKKHPLSLALLLL 472
LD R ++ + ++ D +++ +V +L K L L
Sbjct: 921 KLDPVDMEGKAKPVHFDRTFIHSEATTYDNDERSLQPAEIMEVCEEMLSKERAKLVRKDL 980
Query: 473 LTFKSSGKPNFIFSPHRTKFTMDLLEQWYQ-LDDKARKKYRKKFKACPQPLISTFQPDAH 531
L + + + D LE Q + KA K + P S Q H
Sbjct: 981 LDVELGYMDRSNHGVDQFESARDFLESIQQYVSTKADKLISRGGDIDPSDERSQ-QGLNH 1039
Query: 532 FGSISEN-----LADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSI 586
G ++E ++ ++KY K + + H VG + AQSI
Sbjct: 1040 TGKLTEKTLRTFISACLMKYKKAQVEPGHA---------------------VGAVGAQSI 1078
Query: 587 GEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
GEP TQMTL TFHFAG M++T G+PR++EI+ A+K I TP
Sbjct: 1079 GEPGTQMTLKTFHFAGVAGMSITQGVPRIKEII-NASKEISTP 1120
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 893 VNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNG 952
N++ M GIEAA I+RE+ V +++DPRH+ L+AD MT+ G + + R G
Sbjct: 1286 TNNVMEMREVLGIEAARTTIVREISEVMK--DMDIDPRHMQLLADVMTYKGEVLGITRFG 1343
Query: 953 I-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNR 1009
+ ++ S +Q +FE + + A GR D + S +++G+ GTG ++ R
Sbjct: 1344 LAKMRDSVLQLASFEKTADHLFDAGGAGRTDLVEGVSECIIMGKTVSLGTGAMEVVRR 1401
>gi|327242143|gb|AEA40850.1| RNA polymerase II largest subunit [Monotrichomonas carabina]
Length = 596
Score = 224 bits (572), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 146/428 (34%), Positives = 223/428 (52%), Gaps = 42/428 (9%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S +AE +M+V Q + P+ SP+ GL+QD ++ ++ RDTFL R E MNL+
Sbjct: 7 SQAARAEIQHIMSVPYQIISPQGNSPIIGLVQDSLLGCRLMTFRDTFLEREEVMNLM--- 63
Query: 69 LCILNTEIRTLPP-TIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
+ I E R LPP I KP LWTGKQ+ S + PK I G ++ + ++K+
Sbjct: 64 MWIEGQEDRPLPPPAILKPKMLWTGKQIFSLFL----PK---INYDGWSVTALDEEKK-- 114
Query: 128 STQYGLVHAVW----DTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLL 183
W DT V IR G LL+GILDK ++ LVH V +++ A L
Sbjct: 115 -------QNCWMSFNDTRVIIREGHLLAGILDKNTVARSEKSLVHIVINSYSTLIARDFL 167
Query: 184 SCLAKLFTVYLQRVGFTLGVRDILVRQER-DRKRTKIINKARRLGTEAACNALGLPLDTD 242
+ K+ +L+ GF++G+ D + ++E D+ T + + L E +A+ ++ +
Sbjct: 168 NVTQKVVNNWLESRGFSIGLSDCVTKKESLDQVHTTLSELKQSLEDEEIADAVSGRMEAE 227
Query: 243 PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
P + L+E F +++ + +L+ + + E N+L MV
Sbjct: 228 PGMT---LKET------FEFKVNAKLNKVLETAAGIVKKSISRE--------NSLIQMVN 270
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
+G+KGS +N QI +GQ +EGKR GRTLP + ++ + GFV ++ G+
Sbjct: 271 AGSKGSNINISQILACVGQQNVEGKRIKYGFRGRTLPHYTKDDLGSESRGFVMNSYLIGL 330
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
P EFFFH M GREG+ DTA KTS +GY+QR L+K +E V YD TVR+S ++Q +Y
Sbjct: 331 TPAEFFFHAMGGREGITDTACKTSDTGYIQRRLIKAMESHQVAYDGTVRNSLNQIVQFIY 390
Query: 423 GEDGLDVT 430
G DG D T
Sbjct: 391 GADGYDAT 398
>gi|47156939|gb|AAT12325.1| DNA-directed RNA polymerase I largest subunit [Antonospora
locustae]
Length = 1089
Score = 224 bits (572), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 147/454 (32%), Positives = 238/454 (52%), Gaps = 62/454 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQAL--- 69
K+EA +L Y V +G+P+ GL+QDH++ A L+++D FL +EY N++ L
Sbjct: 435 KSEARYLALNDYNYKVATNGNPIRGLVQDHIVMSAVLTMKDYFLRPSEYGNVLQIPLLSK 494
Query: 70 ----------CILNTEIRTL--PPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELL 117
C R + P I +P+ L+TGKQV++ ++ +L + + +R
Sbjct: 495 EAHHEKAAPVCSSGVLKRIIVPKPAIRRPVTLYTGKQVVTALLQSL--RLPISMRR---- 548
Query: 118 SGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAE 177
+++ L ++ V I++GE+L+G+LDK G + GL+H + G
Sbjct: 549 ----------TSRLKLCGHPEESTVVIKNGEMLTGVLDKNNLGPAEKGLIHQCGEVFGDN 598
Query: 178 HAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGL 237
LL+ ++++ L G+TL + D+L+ ++ + R I + R
Sbjct: 599 VYNDLLTAVSQVINKLLVMDGYTLRMEDLLLSEKGEAGRKAAILEGR------------- 645
Query: 238 PLDTDPEI---ISSQLQEAYASIPQFRAQIDRQYKSLLDK-VTNNINQVC-------LPE 286
+ D I + L+ P+ +D+ + + LD V N++ +V + +
Sbjct: 646 -MHIDSAIRRYLEENLEHGATGRPR---HLDKSWVACLDSLVRNSMCEVASEVVAKSMHK 701
Query: 287 GLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEV 346
G++ FP N+L +V++GAKGS VN QIS +LGQ ELEG+R +MV GRTLP E
Sbjct: 702 GMLRNFPYNHLILIVQTGAKGSLVNASQISAMLGQQELEGRRVPLMVDGRTLPVL--SET 759
Query: 347 SPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHY 406
+ +GG + RF+ GI ++FHCMAGREGL+DTAVK + G + +HLEG+ V Y
Sbjct: 760 TAESGGLIFERFLDGIGICAYYFHCMAGREGLVDTAVKPADQGICSD-VYQHLEGVKVEY 818
Query: 407 DMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQF 440
D TVR++ +++ YGEDGLD TK L D +F
Sbjct: 819 DGTVRNNGNAIVSFRYGEDGLDPTKVGMLKDAEF 852
Score = 96.7 bits (239), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 74/118 (62%), Gaps = 13/118 (11%)
Query: 555 HVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPR 614
HVD + ++ +L+ A PG+ VG++A QS+GEPSTQMTLNTFH AG G N+TLGIPR
Sbjct: 895 HVD-LETLSEWRRVLAEAQPGDPVGIVAGQSLGEPSTQMTLNTFHHAGVGAKNMTLGIPR 953
Query: 615 LREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKE-WL 671
L EILM+A+K I+TP + +P + + + + + D L K+ + E W+
Sbjct: 954 LVEILMVASKNIRTPYLTVP-----------SENITEHFKTVNLIDCLRKLLVCESWV 1000
>gi|77176711|gb|ABA64470.1| DNA-dependent RNA polymerase II largest subunit [Cyanophora
paradoxa]
Length = 1000
Score = 224 bits (571), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 146/423 (34%), Positives = 227/423 (53%), Gaps = 49/423 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEAS ++ V Q + P+ P+ G++QD +++ K++LRDTF+ + MN+V L
Sbjct: 412 RAEASEIIAVPRQIVSPQSNRPVMGIVQDTLMASQKMTLRDTFIEKDVIMNIVMH----L 467
Query: 73 NTEIRTLP-PTIWKP--MPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGST 129
++ LP P I K P WTGKQ+ ST + N+ V+ H G ST
Sbjct: 468 DSFDGRLPIPAIVKSPKGPRWTGKQLFSTFLPNVN----VVRFHSTHPDG-------EST 516
Query: 130 QYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKL 189
+ DT V I +GELL GI+ K+ G++ L+H + + HG + A + K+
Sbjct: 517 DI----SPGDTQVRIENGELLCGIVCKRTLGTSAGSLIHVIMNEHGPDTARVFFNMTQKV 572
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
+L VGF++G+ D + D + + IN + E + D +I +Q
Sbjct: 573 INNWLINVGFSVGIGDTIA----DDRTMESINSTLKKAKE----------EVDTVVIEAQ 618
Query: 250 -----LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESG 304
LQ + I F ++++R +L++ + + +G ++ +NN++ M+ SG
Sbjct: 619 QGKMELQPGRSFIESFESKVNR----ILNQARDAAGKTA--QGSLQR--SNNVKTMLTSG 670
Query: 305 AKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQP 364
+KGS +N Q+ +GQ +EGKR RTLP F + P + GFV+ ++ G+ P
Sbjct: 671 SKGSFINISQMFACVGQQNVEGKRIPFGFRNRTLPHFTKDDYGPESRGFVENSYLRGLTP 730
Query: 365 QEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGE 424
QEFFFH M GREGLIDTAVKTS +GY+QR L+K +E + V YD T R+S +IQ LYGE
Sbjct: 731 QEFFFHAMGGREGLIDTAVKTSETGYIQRRLIKAMEDVMVQYDNTTRNSMGEIIQFLYGE 790
Query: 425 DGL 427
DG+
Sbjct: 791 DGM 793
Score = 41.2 bits (95), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 22/24 (91%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQM 593
++A+PGE VG +AAQSIGEP+TQM
Sbjct: 977 AIAHPGEMVGAIAAQSIGEPATQM 1000
>gi|397135860|gb|AFO11425.1| RNA polymerase I, partial [Kregervanrija fluxuum]
Length = 870
Score = 224 bits (571), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 143/425 (33%), Positives = 218/425 (51%), Gaps = 47/425 (11%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S+ +AE S L V Q + P+ P+ G++QD + K++LRD FL + MN+ +
Sbjct: 307 SYETRAELSQLCAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDNFLEYDQVMNICF-- 364
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR-HGELLSGILDKKQFG 127
I N + P I KP PLW+GKQVLS I PK + R G LLS
Sbjct: 365 -WIPNWDGVVPQPAILKPKPLWSGKQVLSLCI----PKGIFLQRLDGSLLSPK------- 412
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
D+ + I +GE++ G+++K G++ GL+H G E + +
Sbjct: 413 -----------DSGMLIVNGEIMFGVVNKATVGASAGGLIHTTMREKGPEVCAKMFGNIQ 461
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIIS 247
K+ +L GF++G+ D + E + T+ I+ A+ E +
Sbjct: 462 KVVNFWLLHNGFSIGIGDAIADPETMKTITETIDVAK-------------------EKVQ 502
Query: 248 SQLQEAYASI--PQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGA 305
+++A ++ P+ + ++ + K+ N +NN++ MV +G+
Sbjct: 503 VVIRDAQHNLLEPEPGMTVRESFEQKVSKILNEARDAAGKSAETSLKDSNNVKQMVTAGS 562
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS +N Q+S +GQ +EGKR S R+LP F + S + GFV+ ++ G+ PQ
Sbjct: 563 KGSYINISQMSACVGQQIVEGKRIHFGFSDRSLPHFTKDDYSAESKGFVENSYLRGLTPQ 622
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EFFFH MAGREGLIDTAVKT+ +GY+QR L+K LE + VHYD T R+S +IQ +YGED
Sbjct: 623 EFFFHAMAGREGLIDTAVKTAETGYIQRRLLKALEDIMVHYDGTTRNSLGDVIQFIYGED 682
Query: 426 GLDVT 430
GLD T
Sbjct: 683 GLDAT 687
>gi|407043155|gb|EKE41776.1| DNA-directed RNA polymerase III largest subunit, putative [Entamoeba
nuttalli P19]
Length = 1379
Score = 224 bits (571), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 188/625 (30%), Positives = 296/625 (47%), Gaps = 78/625 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM+ + P+ G + QD + + L+ +D + + M Q C
Sbjct: 532 RAECLMLMHSAKNLQTPRTGQMIIAETQDFLTTSYLLTSKDFVIEEEDMM----QWACWF 587
Query: 73 N---TEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGST 129
+ TEI P KP LWTGKQ+ + L P +H E ++ LD +
Sbjct: 588 HNAGTEIDLPTPAYLKPKKLWTGKQLYG---LALKPN-----KH-EGVNISLDVPSKLYS 638
Query: 130 QYGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAK 188
+ G V D + ++ +LL G ++K GS + GL H + +G + +++ +++
Sbjct: 639 KEGKWMCVKDGWICFKNSQLLCGQIEKSIIGSGNKTGLFHLILRDYGTLESAKIMAHISR 698
Query: 189 LFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISS 248
+L GF++G+ D+ + + + +++++ + C+
Sbjct: 699 FCARFLGDYGFSIGISDVTPSADLTQMKEELVSEGYK-----KCD--------------- 738
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKVTNN-INQVCLPEG--LIEPFPANNLQF-MVESG 304
Q E Y S Q Q + L+ + NN ++Q+ G IE ++N M SG
Sbjct: 739 QFIEDYKSGKQ-EVQAGSTPEQTLEALLNNELSQIRERAGKRCIEELKSDNSPLVMALSG 797
Query: 305 AKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQP 364
+KGS +N Q+ +GQ + G R + R+LP F + +P+A GFV F TG+
Sbjct: 798 SKGSVINISQMIACVGQQTVNGGRVSDGFISRSLPHFALHSRTPQAKGFVKNSFFTGLNA 857
Query: 365 QEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGE 424
EFFFH M GREGL+D+AVKT+ +GY+QR L+K LE L VHYD TVR + L++I+ YG+
Sbjct: 858 TEFFFHTMGGREGLVDSAVKTAETGYMQRRLMKALEDLHVHYDGTVRSASLTVIEFKYGD 917
Query: 425 DGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFI 484
DGLD K + +DK LE V+ NL + + +F + N I
Sbjct: 918 DGLDPLKVE--SDKYPINLES---------VLSNLQQNQKPDDEYITPESFDK--EYNAI 964
Query: 485 FSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVV 544
S +TK +L +Q + K +K + + + H+ EN +
Sbjct: 965 IS--QTKIVSELWKQQIETFLKEKK----------EEMTEVYN---HYS--QENAQHGLC 1007
Query: 545 KYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRG 604
T + F + K L S+ G VG LA QS+GEPSTQM L TFHFAG
Sbjct: 1008 GIT-----IQTLKDFISICQEKGLRSVCEAGTPVGALAGQSMGEPSTQMVLKTFHFAGVA 1062
Query: 605 DMNVTLGIPRLREILMMATKAIKTP 629
MN+ LG+PR++EI+ A+K I+TP
Sbjct: 1063 SMNIALGVPRIKEII-NASKKIQTP 1086
Score = 77.4 bits (189), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N I + GIEAA II E+KNV YG+ +D RHL L++D MT G + + R GI
Sbjct: 1248 NHIAVVEKVLGIEAARSTIISEIKNVMDAYGLSIDVRHLLLLSDLMTFKGVILGITRYGI 1307
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
++ S +FE + + A++ R+D ++ S +++G + GTGL Q+
Sbjct: 1308 SKMKDSVFTFASFERTNDHLFDAAVHSRKDEIKGVSESIIVGNQVGLGTGLMQI 1361
>gi|358030890|dbj|BAL15354.1| RNA polymerase II largest subunit, partial [Basidiobolus
haptosporus]
Length = 976
Score = 224 bits (571), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 148/416 (35%), Positives = 216/416 (51%), Gaps = 34/416 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
K E + V Q + P+ P+ G++QD + K + RD F+ +A MN++ +
Sbjct: 434 KVEIQEICMVPKQIISPQSNKPVMGIVQDTLCGVRKFTNRDCFMDKALVMNILM-LVDDW 492
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N I T P I KP+PLWTGKQ+LS VI PK I + D+K S
Sbjct: 493 NGVIXT--PAILKPLPLWTGKQLLSMVI----PKGINCITYHSAHPD--DEKSDISP--- 541
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
DT V + GEL+SGI+ KK G++ G VH + + HG E A L +
Sbjct: 542 -----GDTKVVVEDGELISGIVCKKTVGASNGGWVHTIMNEHGPEIAKKFLCGTQAVVNY 596
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L + GF++G+ D + ++ T+ I+ A++ +E A L+ P + +
Sbjct: 597 WLLQNGFSIGIGDTIADEKTAEHITETIDSAKQRVSEIILAAQQDKLECAPGMTIRE--- 653
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
F +++ R+ D + + E NN++ MV SG+KGS VN
Sbjct: 654 ------TFESKVSRELNRARDHSGQSAERSLKEE--------NNVKQMVVSGSKGSFVNI 699
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ ++EGKR RTLP F + P + GFV+ ++ + PQEFFFH M
Sbjct: 700 SQMSACVGQQDVEGKRIPFGFKFRTLPHFTKDDYGPESKGFVENSYLRRLTPQEFFFHAM 759
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
GREGLIDTAVKT+ +GY+QR LVK LE + V YD TVR+S ++IQ YGEDG+D
Sbjct: 760 GGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGNIIQFCYGEDGMD 815
>gi|57792099|gb|AAW56766.1| RNA polymerase II largest subunit [Strobilomyces floccopus]
Length = 597
Score = 224 bits (571), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 152/435 (34%), Positives = 228/435 (52%), Gaps = 46/435 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S + V Q + P+ P+ G++QD + K +LRDTFL + N++ L +
Sbjct: 21 RAELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLDWNQVQNIL---LWLP 77
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ P I KP PLW+GKQ+LS VI P+ I R + S
Sbjct: 78 EWDGDVPTPAIIKPKPLWSGKQILSMVI----PRGINIHRAPDPKSS------------- 120
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ V+D + I +GE+L GI+DKK G+TQ GL+H V+ G E + + + +
Sbjct: 121 --NPVFDDGMMIDNGEILFGIVDKKTVGATQGGLIHVVFREKGPEATRQVFTGIQMVVNF 178
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + + T+ I + ++ E +A L P + +
Sbjct: 179 WLFHNGFSIGIGDTIAGPKVMTYITQRIGEKKQQVAEIIDDAYHDRLKPMPGMTIRE--- 235
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
F ++++R+ D + Q L E NN++ MV +G+KGS +N
Sbjct: 236 ------SFESKVERELNRARDD-SGQYAQKNLKED-------NNVKQMVTAGSKGSYINI 281
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EG+R RTLP F + SP A GFV+ ++ G+ PQE+FFH M
Sbjct: 282 SQMSVCVGQQSVEGRRIPFGFRHRTLPHFTKDDFSPEARGFVENSYLRGLTPQEYFFHAM 341
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD--VT 430
AGREGLIDTAVKT+ +GY+QR LVK LE + V YD TVR+S LIQ +YGEDG+D
Sbjct: 342 AGREGLIDTAVKTAETGYIQRRLVKALEDVMVCYDGTVRNSLGDLIQFIYGEDGMDGAFI 401
Query: 431 KRQY-----LTDKQF 440
+RQ ++DK+F
Sbjct: 402 ERQKIETFGMSDKEF 416
>gi|120561231|gb|ABM27001.1| RNA polymerase II largest subunit, partial [Coelomomyces
stegomyiae]
Length = 1014
Score = 224 bits (571), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 149/421 (35%), Positives = 219/421 (52%), Gaps = 39/421 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAE L V Q + P+ P+ G++QD + K + RDTFLT++ M ++ + +
Sbjct: 428 KAEIQQLCMVPLQIVSPQGNKPVMGIVQDTLCGIRKFTQRDTFLTKSTVMCIL---MWVP 484
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ P I KP PLWTGKQ+LS +I PK I H D+K S
Sbjct: 485 GWDGNVPIPAILKPKPLWTGKQILSLII----PKVNCIAFHSTHPD---DEKTDISPG-- 535
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
DT V + G LL+GI+ KK G++ GLVH +W +G+E L+ +
Sbjct: 536 ------DTKVIVEDGHLLAGIVCKKTVGTSSGGLVHVIWMEYGSEACKHFLNGCQTIVNY 589
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + D K ++IN +G + + + Q
Sbjct: 590 WLIHNGFSIGIGDTIA----DNKAMEMINDIILAAKNQVSKLIG-----EAQKDHLKPQP 640
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTN--NINQVCLPEGLIEPFPANNLQFMVESGAKGSTV 310
F A+++ ++L D VT+ Q E NN++ MV +G+KGS +
Sbjct: 641 GLTIRETFEAEVN---QTLSDTVTSAGAAAQRSFKE-------QNNVKQMVVAGSKGSYI 690
Query: 311 NTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFH 370
N Q+S +GQ +EGKR RTLP F+ + SP + GFV+ ++ G+ PQEFFFH
Sbjct: 691 NISQMSACVGQQNVEGKRIPFGFKYRTLPHFVKDDHSPESRGFVENSYLRGLNPQEFFFH 750
Query: 371 CMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVT 430
M GREGLIDTAVKT+ +GY+QR LVK LE + V YD TVR++ ++IQ +YGEDG+D
Sbjct: 751 AMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNAQGNIIQFVYGEDGMDAI 810
Query: 431 K 431
+
Sbjct: 811 Q 811
>gi|168066799|ref|XP_001785319.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663074|gb|EDQ49860.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1742
Score = 224 bits (571), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 142/416 (34%), Positives = 218/416 (52%), Gaps = 34/416 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ G++QD ++ K++ RDTF+ + + N++ +
Sbjct: 514 RAEVLELMMVPKCIVSPQSNRPVIGIVQDTLLGCRKVTKRDTFIEKDVFYNIL---MWWE 570
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + PTI KP PLWTGKQ+ S +I PK ++R ++G G
Sbjct: 571 EFDGKIPIPTILKPRPLWTGKQIFSLII----PKQINLMRQAFWHP----DGEYGDLSPG 622
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
DT V I GE+++G L KK G+ Q L+H +W+ G + A L L
Sbjct: 623 ------DTQVRIEKGEVVAGTLCKKTLGTGQGSLIHVIWEEVGPDAARKFLGHTQWLVNY 676
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L + GF++G+ D + K + I KA+ + A L+ P ++E
Sbjct: 677 WLLQQGFSIGIGDTIADAATMEKINETITKAKHDVKDLIKKAQDKQLEAQP---GRTMKE 733
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
++ + + +L+K ++ + L E +NNL+ MV +G+KG+ +N
Sbjct: 734 SF----------ENRVNGILNKARDDAG-ASAQKSLAE---SNNLKAMVTAGSKGTFINI 779
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q++ +GQ +EGKR RTLP F + P + GFV+ ++ G+ PQEFFFH M
Sbjct: 780 SQMTACVGQQNVEGKRIPYGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 839
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +IQ LYGEDG+D
Sbjct: 840 GGREGLIDTAVKTSETGYIQRRLVKAMEDVMVKYDGTVRNSLGDVIQFLYGEDGMD 895
Score = 149 bits (377), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 134/446 (30%), Positives = 218/446 (48%), Gaps = 63/446 (14%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
L+SL PGE +G +AAQSIGEP+TQMTLNTFHFAG NVTLG+PRLREI+ +A K IK
Sbjct: 1076 LMSLVAPGEMIGCVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLREIINVA-KKIK 1134
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNY-QMKFC 686
TPS+ + P + K +++A + ++ T+ V + +I W + PEP +
Sbjct: 1135 TPSLTVYLKPGVNKEKERAKNVQCALEYTTLRSVTQATEI--WYD--PEPMSTLIEEDME 1190
Query: 687 FIPAHMYRDKTSVKPSKIIDHFERKFL-KELEVAIAKRAAQGLKNMNIEQSRDQMEDDV- 744
F+ ++ V P KI R L +E+ V A + +N+E +DD+
Sbjct: 1191 FVKSYYEMPDEDVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLE-----FDDDLT 1245
Query: 745 ---EDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSE 801
DD E + R+ + +D E P+ E M+E
Sbjct: 1246 CIFNDDNAE------KLILRIRIMND-----------------------EAPKGE--MTE 1274
Query: 802 REEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNLFE 861
+ EDD KIE T + ++ + + + K DKKN L F+
Sbjct: 1275 QSEDDVFLK-----KIESNMLTEMALRGIPDIRKVFIK--EDKKNRFDENLAFV------ 1321
Query: 862 EKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 921
E + +L T+G+N+ + + +D ++ N + + GIEA +++E+++V +
Sbjct: 1322 -VEQEWVLDTEGVNMLAVMCHED-VDASRTTSNHLIEVIEVLGIEAVRNSLLKELRDVIS 1379
Query: 922 VYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSF-IQKMTFEMPLEKIRQASMQGR 980
G V+ RHL+++ D MT+ G +A+ R+GI N + + + +FE ++ + A++
Sbjct: 1380 FDGSYVNYRHLAILCDVMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAE 1439
Query: 981 EDSLRAPSARVMLGQECRQGTGLFQL 1006
D L+ + +MLGQ GTG F L
Sbjct: 1440 ADHLKGVTENIMLGQLAPIGTGDFGL 1465
>gi|83320446|gb|ABC02850.1| RNA polymerase II largest subunit, partial [Mortierella
verticillata]
Length = 1016
Score = 224 bits (571), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 149/417 (35%), Positives = 219/417 (52%), Gaps = 36/417 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE + + V Q + P+ P+ G++QD + K + RD FLT+ MNLV + +
Sbjct: 425 RAEITEICMVPRQIVSPQSNKPVMGIVQDTLCGVRKFTKRDCFLTKEMVMNLV---MWVP 481
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKD-KVIIRHGELLSGILDKKQFGSTQY 131
E P I KP PLWTG+Q+LS +I PK I H S D ++ +
Sbjct: 482 GWEGFLPTPAILKPKPLWTGRQMLSMII----PKGINCICYH----STHPDNEESDISP- 532
Query: 132 GLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFT 191
DT V + +GEL+ GI+ KK G++ GL+H + + HG E A + + +
Sbjct: 533 ------GDTKVIVENGELICGIVCKKTVGTSGGGLIHVIMNQHGPEVAKTFFNGCQTVVN 586
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQ 251
+L + GF++G+ D + + T II+ A + A L+ P + L+
Sbjct: 587 YWLLQHGFSIGIGDTVADRSTVMTITSIISNATNNVNDLIIQAQQDKLECKPGMT---LR 643
Query: 252 EAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVN 311
E + S+ ++R + D + Q L E NN++ MV SG+KGS +N
Sbjct: 644 ETFESL------VNRALNTARDD-AGKMAQQSLRED-------NNVKQMVISGSKGSFIN 689
Query: 312 TMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHC 371
Q++ +GQ +EGKR RTLP F + SP + GFV+ ++ G+ PQEFFFH
Sbjct: 690 VSQMTACVGQQNVEGKRIPFGFKYRTLPHFTKDDHSPESRGFVENSYLRGLTPQEFFFHA 749
Query: 372 MAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
M GREGLIDTAVKT+ +GY+QR LVK LE + V YD TVR+S +IQ YGEDG+D
Sbjct: 750 MGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGHVIQFCYGEDGMD 806
>gi|167385199|ref|XP_001737245.1| DNA-directed RNA polymerase III subunit RPC1 [Entamoeba dispar
SAW760]
gi|165900031|gb|EDR26493.1| DNA-directed RNA polymerase III subunit RPC1, putative [Entamoeba
dispar SAW760]
Length = 1379
Score = 224 bits (571), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 181/628 (28%), Positives = 295/628 (46%), Gaps = 84/628 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM+ + P+ G + QD + + L+ +D + + M Q C
Sbjct: 532 RAECLMLMHSAKNLQTPRTGQMIIAETQDFLTTSYLLTSKDFVIEEEDMM----QWACWF 587
Query: 73 N---TEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGST 129
+ TEI P KP LWTGKQ+ + L P +H E ++ LD +
Sbjct: 588 HNAGTEIDLPTPAYLKPKKLWTGKQLYG---LALKPN-----KH-EGVNISLDVPSKLYS 638
Query: 130 QYGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAK 188
+ G V D + ++ +LL G ++K GS + GL H + +G + +++ +++
Sbjct: 639 KEGKWMCVKDGWICFKNSQLLCGQIEKSIIGSGNKTGLFHLILRDYGTLESAKIMAHISR 698
Query: 189 LFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISS 248
+L GF++G+ D+ + + + +++++ + D E S
Sbjct: 699 FCARFLGDYGFSIGISDVTPSADLTQMKEELVSEGYK------------KCDQFIEDYKS 746
Query: 249 QLQEAYA-SIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKG 307
QE A S P+ + ++LL+ + I + + E N+ M SG+KG
Sbjct: 747 GKQEVQAGSTPE------QTLEALLNNELSEIRERAGKRCIEELKSDNSPLVMALSGSKG 800
Query: 308 STVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEF 367
S +N Q+ +GQ + G R + R+LP F + +P+A GFV F TG+ EF
Sbjct: 801 SVINISQMIACVGQQTVNGGRVSDGFISRSLPHFALHSRTPQAKGFVKNSFFTGLNATEF 860
Query: 368 FFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL 427
FFH M GREGL+D+AVKT+ +GY+QR L+K LE L VHYD TVR + L++I+ YG+DGL
Sbjct: 861 FFHTMGGREGLVDSAVKTAETGYMQRRLMKALEDLHVHYDGTVRSASLTVIEFKYGDDGL 920
Query: 428 DVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPN--FIF 485
D K + K+P++L +L + + KP+ +I
Sbjct: 921 DPLKVES--------------------------DKYPINLE-SVLSNLQQNQKPDDEYIT 953
Query: 486 SPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTF----QPDAHFGSISENLAD 541
+ K ++ Q + + +++ K + +I + Q +A G L
Sbjct: 954 PENFDKEYNAIISQTKIVSELWKQQLETFLKEKKEEMIEIYNRYDQENAQHG-----LCG 1008
Query: 542 SVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFA 601
++ K +F + K L S+ G VG LA QS+GEPSTQM L TFHFA
Sbjct: 1009 ITIQTLK---------EFISICQKKGLRSVCEAGTPVGALAGQSMGEPSTQMVLKTFHFA 1059
Query: 602 GRGDMNVTLGIPRLREILMMATKAIKTP 629
G MN+ LG+PR++EI+ A+K I+TP
Sbjct: 1060 GVASMNIALGVPRIKEII-NASKKIQTP 1086
Score = 77.4 bits (189), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N I + GIEAA II E+KNV YG+ +D RHL L++D MT G + + R GI
Sbjct: 1248 NHIAVVEKVLGIEAARSTIISEIKNVMDAYGLSIDVRHLLLLSDLMTFKGVILGITRYGI 1307
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
++ S +FE + + A++ R+D ++ S +++G + GTGL Q+
Sbjct: 1308 SKMKDSVFTFASFERTNDHLFDAAVHSRKDEIKGVSESIIVGNQVGLGTGLMQI 1361
>gi|409082995|gb|EKM83352.1| hypothetical protein AGABI1DRAFT_65857 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1785
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 150/416 (36%), Positives = 222/416 (53%), Gaps = 39/416 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S + V Q + P+ P+ G++QD + K +LRD FL N++ L +
Sbjct: 503 RAELSQVAWVPRQIISPQANKPVMGIVQDTLCGVRKFTLRDCFLDWNHVQNIL---LWVP 559
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + P I KP PLWTGKQ+LS I P+ I R + S
Sbjct: 560 DWDGTIPTPAILKPKPLWTGKQILSMTI----PRGINIHRSPDPKSS------------- 602
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ V+D + I +GEL+ GI+DKK G+TQ GLVH V+ G E L + L ++
Sbjct: 603 --NPVFDDGMLIENGELIFGIVDKKTVGATQGGLVHVVFREKGPEVTRQLFTGLQRVVNF 660
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + + T+ I + + T+ +A L P + ++E
Sbjct: 661 WLFHNGFSIGIGDTIADMKTMSYITQTIIERKAEVTKIIEDATHDRLKPKPGMT---IRE 717
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
++ S+ ++RQ +L + Q L E NN++ MV +G+KGS +N
Sbjct: 718 SFESM------VERQL-NLARDTSGQYAQKHLKED-------NNVKQMVVAGSKGSFINI 763
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EG+R RTLP F + +P + GFV+ ++ G+ PQEFFFH M
Sbjct: 764 SQMSVCVGQQSVEGRRIPFGFRHRTLPHFTKDDFTPESRGFVENSYLRGLTPQEFFFHAM 823
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
AGREGLIDTAVKT+ +GY+QR LVK LE + V YD TVR+S LIQ +YGEDG+D
Sbjct: 824 AGREGLIDTAVKTAETGYIQRRLVKALEDVMVCYDGTVRNSLGDLIQFVYGEDGMD 879
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 68/106 (64%), Gaps = 3/106 (2%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
S+ +PGE G L+AQSIGEP+TQMTLNTFH+AG NVTLG+PRL+EI+ +AT IKTP
Sbjct: 1063 SVVHPGEMCGTLSAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATN-IKTP 1121
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISP 675
S+ + P++ A + + + ++ V V+I W + P
Sbjct: 1122 SLTVYLEPEISVSPTLAKNVQQELAYTSLRTVTAAVEI--WYDPDP 1165
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 87/158 (55%), Gaps = 3/158 (1%)
Query: 851 KLLFLPSNLFEE-KESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAAN 909
K++ P E K+ + +L+TDG+N+ + + D + Y N + + GIEAA
Sbjct: 1298 KVMIRPDGTIETGKDKEWVLETDGVNLKTVMCIDGV-DFTRTYSNSCVEIFNVLGIEAAR 1356
Query: 910 RVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMP 968
I++E+++V G V+ RHL+L+ D MTH G+ +A+ R+GI R + + + +FE
Sbjct: 1357 AAIMKELRSVIEFDGSYVNYRHLALLCDLMTHRGSLMAITRHGINRADTGALMRCSFEET 1416
Query: 969 LEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+E + +A+ G +D + VM GQ GTG F++
Sbjct: 1417 VEVLMEAAAVGEKDDCHGIAENVMFGQMAPMGTGAFEV 1454
>gi|397135798|gb|AFO11394.1| RNA polymerase I, partial [Starmera amethionina]
Length = 870
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 148/419 (35%), Positives = 216/419 (51%), Gaps = 43/419 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE + V Q + P+ P G++QD + K++LRD+F+ + MN++Y I
Sbjct: 310 RAELLNICAVPLQIVSPQSNKPCMGIVQDTLCGVRKMTLRDSFIDYDQMMNILY---WIK 366
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + PTI KP PLWTGKQ+LS I PK + R E + I K
Sbjct: 367 DWDGVIPQPTILKPRPLWTGKQMLSMAI----PKGIHLQRFDEGTTLISPK--------- 413
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
D + I G+++ G++DKK G+T GL+H V G +L L K+
Sbjct: 414 ------DNGMLIIDGKIIFGVVDKKTVGATNGGLIHTVMREKGPTECANLFGKLQKVVNF 467
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + ++ T I A+ E E+ ++L
Sbjct: 468 WLLHNGFSIGIGDTIADASTMKEITDAIALAKVKVDEVTL-----------EVQQNKLTA 516
Query: 253 AYASI--PQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTV 310
+ F + R DK + +V L +GL NN++ MV +G+KGS +
Sbjct: 517 KHGMTLRESFEDNVIRYLNEARDKAGRSA-EVNL-KGL------NNVKQMVSAGSKGSFI 568
Query: 311 NTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFH 370
N Q+S +GQ +EGKR A + RTLP F + SP + GFV+ ++ G+ PQEF+FH
Sbjct: 569 NIAQMSACVGQQSVEGKRIAFGFADRTLPHFAKDDYSPESKGFVENSYLRGLTPQEFYFH 628
Query: 371 CMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
M GREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S +IQ +YGEDGLD
Sbjct: 629 AMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGGIIQFVYGEDGLDA 687
>gi|159118719|ref|XP_001709578.1| DNA-directed RNA polymerase subunit A' [Giardia lamblia ATCC 50803]
gi|133352|sp|P25202.1|RPC1_GIALA RecName: Full=DNA-directed RNA polymerase III subunit RPC1; Short=RNA
polymerase III subunit C1; AltName: Full=DNA-directed RNA
polymerase III largest subunit; AltName: Full=RNA
polymerase III subunit C160
gi|9364|emb|CAA42895.1| subunit A of DNA dependent RNA polymerase III [Giardia intestinalis]
gi|157437695|gb|EDO81904.1| DNA-directed RNA polymerase subunit A [Giardia lamblia ATCC 50803]
Length = 1741
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 196/682 (28%), Positives = 303/682 (44%), Gaps = 83/682 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLV------- 65
+AEA LM + P+ G + GL QD + LS + F+TR EY V
Sbjct: 739 RAEAGILMGSHENIISPRHGECMIGLTQDFLTGIYLLSGKGIFMTRQEYCQHVSYGCDGF 798
Query: 66 ---YQALCILN--------------TEIRTL---------PPTIWKPMPLWTGKQVLSTV 99
+ + N TE T+ P I P L++GKQVLS V
Sbjct: 799 GDATYGVSLYNYGREFIKSIHDRRGTEEDTVGFVKVPCLSQPCIVYPRQLYSGKQVLS-V 857
Query: 100 IINLTPKDKVII--RHGELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKK 157
++ D V I HG+ K + +V D ++ I++ E L G L K
Sbjct: 858 LMKGNDFDSVNINLEHGD--------KTYKKDSDRRALSVNDDYIIIQNSEHLVGRLTKT 909
Query: 158 QFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRT 217
S++ + + + +G A ++ AK+ +L GFT+G+ D++ Q K+
Sbjct: 910 FLASSKNCIFYFLVQNYGPVSAARIMLRFAKVAARFLMNYGFTIGIDDVMPSQRVLGKKE 969
Query: 218 KIINKARRLGTEAACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTN 277
I+ + E + L+ P S +QE ++ L+++ +
Sbjct: 970 VIVQEGYEKAQEKIRDYESGKLEAIP---GSTVQETL--------------EATLNQILS 1012
Query: 278 NINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRT 337
N+ + C L E N M G+KGS +N Q+ +LGQ G R R+
Sbjct: 1013 NVRESCAQIALKELHFTNKPLIMSLCGSKGSPINIAQMIIILGQQSFGGSRAPDDFYTRS 1072
Query: 338 LPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVK 397
P F Y P A GF+ F TG+ P EF H AGR+G+ID+A KT+ +GYLQR LVK
Sbjct: 1073 TPYFYHYSKEPNAKGFILNSFYTGLLPFEFLAHARAGRDGVIDSACKTADTGYLQRRLVK 1132
Query: 398 HLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVIL 457
LE L+V YD TVR+S S++Q +G DG D K + T + F ++ + + ++L
Sbjct: 1133 CLEDLSVSYDFTVRNSKKSVVQFRFGHDGFDPIKLEVGTGQCF-----DLDTLLRHIILL 1187
Query: 458 NLLKKHPLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKA 517
N + +LL +K+ + + + + L+E R F+
Sbjct: 1188 NRSQDLAEGAFPVLLDRYKAEAELDVLLNKDFYGQEACLIE---------RSNVTSYFQQ 1238
Query: 518 CPQPLISTFQPDAHFG-SISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGE 576
P ++T + H +++ LA S ++ T + D +D F + K + PG
Sbjct: 1239 SILPKLTT---NTHIATTVAPALAASFLQTTLTKKD---IDDFLRQVRRKYIRLNLEPGS 1292
Query: 577 NVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFL 636
G +AAQS+GEPSTQMTL +FH AG MN+T G+PRL+EI+ K I TP +
Sbjct: 1293 PCGAVAAQSVGEPSTQMTLKSFHHAGLASMNITQGVPRLKEIVDGVVK-ISTPITTVELH 1351
Query: 637 PDMPKLEKKANRLAKSMTRITM 658
D+ K E A K + + M
Sbjct: 1352 VDVDKEELAATVTEKYLEKARM 1373
Score = 62.8 bits (151), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 74/159 (46%), Gaps = 7/159 (4%)
Query: 865 SKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 924
+K+ L +GI + I + D + N+I +A+T GIEAA I E+K +G
Sbjct: 1511 TKYNLLVEGIGLQNILNVSGI-DFTRTLSNNIVEVANTLGIEAAVATISNEIKACMDSHG 1569
Query: 925 IEVDPRHLSLVADYMTHSGTYVAMNRNGIR--LNPSFIQKMTFEMPLEKIRQASMQGRED 982
+ VD RH+ L+AD M G + R G+ S I +FE E + A++ + D
Sbjct: 1570 MAVDMRHIRLLADIMCFRGRVLGFTRFGLTKMKADSVIMLASFEKTGEHLFNAALGNKVD 1629
Query: 983 SLRAPSARVMLGQECRQGTGLFQLRNR----EKKKKKVE 1017
+ ++LG+ GTG F L EK K +E
Sbjct: 1630 EANGVTESIILGKPMSMGTGSFSLLQAPYFDEKTGKTIE 1668
>gi|358387637|gb|EHK25231.1| hypothetical protein TRIVIDRAFT_85034 [Trichoderma virens Gv29-8]
Length = 1757
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 151/428 (35%), Positives = 218/428 (50%), Gaps = 54/428 (12%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S +AE L V + + P+ PL G++QD + K+ RDTFL + + MNL+
Sbjct: 508 SEETRAEVKELCLVPNNIVSPQKNGPLMGIVQDSLAGAYKICRRDTFLDKNQVMNLM--- 564
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGS 128
L + N + P I KP P WTGKQ++S VI PK+ L DK +
Sbjct: 565 LWVPNWDGIIPQPAILKPRPRWTGKQIISMVI----PKEIS-------LHAPEDKSE--- 610
Query: 129 TQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAK 188
+ DT + I+ GEL+ G++ KK GS G++H ++ G E A++ L+ + +
Sbjct: 611 ------SPLRDTGLLIQAGELMYGLMKKKNIGSASGGVIHLCYNELGPEGAMAFLNGVQQ 664
Query: 189 LFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKAR----RLGTEAACNALGLPLDTDPE 244
+ + +L + G ++G+ D + ++ K I+ + RL A N L
Sbjct: 665 VVSYWLLQNGHSIGIGDTIPDKQTIEKVQVHIDTQKAEVARLTAMATANEL--------- 715
Query: 245 IISSQLQEAYASIPQFRAQIDRQYKSLLDKV---TNNINQVCLPEGLIEPFPANNLQFMV 301
EA + RA + + L+ Q L + +NN M
Sbjct: 716 -------EALPGM-NVRATFENKVSMALNMARDQAGTTTQKSLKD-------SNNAVTMA 760
Query: 302 ESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTG 361
ESG+KGS++N Q++ L+GQ +EGKR RTLP F + SP A GFV+ ++ G
Sbjct: 761 ESGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRG 820
Query: 362 IQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVL 421
+ P EFFFH MAGREGLIDTAVKT+ +GY+QR LVK LE L YD TVR+S +IQ L
Sbjct: 821 LTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLNAQYDGTVRNSLGDIIQFL 880
Query: 422 YGEDGLDV 429
YGEDGLD
Sbjct: 881 YGEDGLDA 888
Score = 97.4 bits (241), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 65/88 (73%), Gaps = 3/88 (3%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
S NPGE VGVLAAQSIGEP+TQMTLNTFHFAG NVTLG+PRL+EIL +A K IKTP
Sbjct: 1070 SFVNPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLA-KNIKTP 1128
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRIT 657
SM + +L D P +++ + +S+ T
Sbjct: 1129 SMAV-YL-DTPLAKQEQAKKLRSLVEYT 1154
Score = 77.0 bits (188), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 67/122 (54%), Gaps = 1/122 (0%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D + Y ND+ + +GIE +++E+ V A G V+ RH++L+ D MT+ G+
Sbjct: 1343 VDPTRTYTNDLWQVIEVFGIEGTRAALVKELTAVLAFDGSYVNHRHIALLCDVMTYRGSI 1402
Query: 946 VAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
A+ R+GI R + + + +FE +E + +A+ G D R S VMLGQ GTG F
Sbjct: 1403 SAVTRHGINRADTGALMRCSFEETVEILLEAAATGELDDCRGISENVMLGQMAPMGTGHF 1462
Query: 1005 QL 1006
+
Sbjct: 1463 DV 1464
>gi|397135806|gb|AFO11398.1| RNA polymerase I, partial [Ogataea angusta]
Length = 866
Score = 224 bits (570), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 144/424 (33%), Positives = 224/424 (52%), Gaps = 43/424 (10%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S+ +AE + V Q + P+ P+ G++QD + K++LRDTF+ + MN+ +
Sbjct: 307 SYETRAELEQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDTFIEYDQVMNMCF-- 364
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR-HGELLSGILDKKQFG 127
I N + P I KP PLW+GKQVLS I P+ + R G LLS
Sbjct: 365 -WIPNWDGVVPQPAILKPKPLWSGKQVLSMCI----PQGIFLQRLDGSLLSP-------- 411
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
D+ + I +GE++ G+++K GS+ GL+H V G + L +
Sbjct: 412 ----------KDSGMLIVNGEIMFGVVNKATVGSSAGGLIHTVMREKGPKVCAQLFGNIQ 461
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIIS 247
K+ +L GF++G+ D + E + T+ I A+ E +A L+ +P +
Sbjct: 462 KVVNYWLLHNGFSIGIGDAIADSETMKTITETIAIAKEKVQEVIMDAQKNLLEAEPGMT- 520
Query: 248 SQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKG 307
R +++ LL++ ++ + E ++ +NN++ MV +G+KG
Sbjct: 521 ------------VRESFEQKVSKLLNEARDSAGKSA--ETSLKD--SNNVKQMVTAGSKG 564
Query: 308 STVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEF 367
S +N Q+S +GQ +EGKR + R+LP F + S + GFV+ ++ G+ PQEF
Sbjct: 565 SYINISQMSACVGQQIVEGKRINFGFADRSLPHFTKDDYSAESKGFVENSYLRGLTPQEF 624
Query: 368 FFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL 427
FFH MAGREGLIDTAVKT+ +GY+QR L+K LE + VHYD T R+S +IQ +YGEDGL
Sbjct: 625 FFHAMAGREGLIDTAVKTAETGYIQRRLLKALEDIMVHYDGTTRNSLGDVIQFIYGEDGL 684
Query: 428 DVTK 431
D T+
Sbjct: 685 DGTQ 688
>gi|297603848|ref|NP_001054670.2| Os05g0151000 [Oryza sativa Japonica Group]
gi|222630225|gb|EEE62357.1| hypothetical protein OsJ_17146 [Oryza sativa Japonica Group]
gi|255676030|dbj|BAF16584.2| Os05g0151000 [Oryza sativa Japonica Group]
Length = 1834
Score = 224 bits (570), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 140/417 (33%), Positives = 216/417 (51%), Gaps = 34/417 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ G++QD ++ K++ RDT + + +MN++ +
Sbjct: 512 RAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNIL---MWWE 568
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + + P I KP P+WTGKQV + +I PK +IR SG + + G
Sbjct: 569 DFDGKVPAPAILKPRPIWTGKQVFNLII----PKQINLIR----FSGWHSEAETRFITPG 620
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
DT V I GELLSG L KK G++ L+H +W+ G + A L L
Sbjct: 621 ------DTMVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNY 674
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L + GF++G+ D + + I+KA+ D + + Q ++
Sbjct: 675 WLLQNGFSIGIGDTIADAATMENINETISKAK----------------NDVKKLIKQFRD 718
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
R ++ +++ +++V N V +NNL+ M +G+KG+ +N
Sbjct: 719 NQLEAEAGRTTME-SFENRVNEVLNKARDVAGSSAEKSLSESNNLKAMATAGSKGTFINI 777
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q++ +GQ +EGKR + RTLP F + P + GFV+ ++ G+ PQEFFFH M
Sbjct: 778 SQMTACVGQQNVEGKRIPFGFTNRTLPHFTKNDYGPESRGFVENSYLRGLTPQEFFFHAM 837
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +IQ LYGEDG+D
Sbjct: 838 GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDA 894
Score = 116 bits (291), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 127/471 (26%), Positives = 195/471 (41%), Gaps = 120/471 (25%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
L SL PGE +G +AAQSIGEP+TQMTLNTFH+AG NVTLG+PRLREI+ +A K IK
Sbjct: 1074 LQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA-KNIK 1132
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCF 687
TPS+ + P++ K ++ A + ++ T+ V +I W + P + + F
Sbjct: 1133 TPSLSVHLKPEVNKKKELAKNVQCALEYTTLRSVTHATEI--WYDPDPLGTI-IEEDAEF 1189
Query: 688 IPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDD 747
+ ++ + P KI R IE +R+ M D
Sbjct: 1190 VQSYYEMPDEDIDPDKISPWLLR----------------------IELNREMMVD----- 1222
Query: 748 EGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDN 807
L D++ +K+N E D+D +S DDN
Sbjct: 1223 ---------KKLSMADIA--------------EKINHEFDDD---------LSCIFNDDN 1250
Query: 808 TSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNLFEEKESKH 867
+ R +I ++ ++D + ++ K + SN+ E
Sbjct: 1251 ADKLILRVRITNDEAQKGEIQDEYGEDDVFLKK--------------IESNMLTEMA--- 1293
Query: 868 LLKTDGINVNFISQYRHLLDLNKLYVND-----IHYMASTYGIEA----------ANRVI 912
L GIN FI + ++NK ND +M T G+ A R
Sbjct: 1294 LRGIPGINKVFIKEG----NVNKFEDNDGFKTEKGWMLDTEGVNLLAVMCHEDVDATRTT 1349
Query: 913 IREVKNVFAVYGIE--------------------VDPRHLSLVADYMTHSGTYVAMNRNG 952
+ V V GIE V+ RHL+++ D MT+ G +A+ R+G
Sbjct: 1350 SNHLIEVIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAVLCDTMTYRGHLMAITRHG 1409
Query: 953 IRLNPSF-IQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTG 1002
I N + + + +FE ++ + A++ D LR S +MLGQ GTG
Sbjct: 1410 INRNDTGPLMRCSFEETVDILLDAAVYAESDPLRGVSENIMLGQLAPIGTG 1460
>gi|413915234|gb|AFW21479.1| RNA polymerase II largest subunit [Neotyphodium gansuense var.
inebrians]
Length = 1761
Score = 224 bits (570), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 151/424 (35%), Positives = 217/424 (51%), Gaps = 49/424 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + + P+ PL G++QD + K+ RDTF+ + MN++ L +
Sbjct: 510 RAEVKELCLVPNNIVSPQKNGPLMGVVQDSLAGAYKICRRDTFIDKEMVMNMM---LWVP 566
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N + P I KP P WTGKQ++S VI PK+ I H S D
Sbjct: 567 NWDGVIPQPAILKPRPRWTGKQLISMVI----PKE--ISLHSPESSAGQDNADI------ 614
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ DT + I+ GELL G+L KK GS G+VH ++ G + A++ L+ + ++ T
Sbjct: 615 ---PLKDTGLLIQSGELLYGLLKKKNIGSAAGGIVHLSYNELGPDGAMAFLNGVQQVVTY 671
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKAR----RLGTEAACNALGLPLDTDPEIISS 248
+L G ++G+ D + ++ K I+ + RL +A N L
Sbjct: 672 WLLNNGHSIGIGDTVPDKQTIEKVQVHIDTQKAEVARLTAQATANEL------------- 718
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKV---TNNINQVCLPEGLIEPFPANNLQFMVESGA 305
EA + RA + + L+ Q L + +NN M +SG+
Sbjct: 719 ---EALPGM-NVRATFENKVSMALNSARDQAGTTTQRSLKD-------SNNAVTMADSGS 767
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS++N Q++ L+GQ +EGKR RTLP F + SP A GFV+ ++ G+ P
Sbjct: 768 KGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPT 827
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EFFFH MAGREGLIDTAVKT+ +GY+QR LVK LE L+ YD TVR+S +IQ LYGED
Sbjct: 828 EFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDIIQFLYGED 887
Query: 426 GLDV 429
GLD
Sbjct: 888 GLDA 891
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/64 (73%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
S +PGE VGVLAAQSIGEP+TQMTLNTFHFAG NVTLG+PRL+EIL +A K IKTP
Sbjct: 1073 SFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLA-KDIKTP 1131
Query: 630 SMEI 633
SM +
Sbjct: 1132 SMAV 1135
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 70/122 (57%), Gaps = 1/122 (0%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D + Y ND+ + +GIEAA +++E+ NV A G V+ RH++L+ D MT+ GT
Sbjct: 1346 VDPTRTYTNDLWQVVEVFGIEAARSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGTI 1405
Query: 946 VAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
A+ R+GI R + + + +FE +E + +A+ G D R S VMLGQ GTG F
Sbjct: 1406 SAVTRHGINRADTGALMRCSFEETVEILLEAAASGELDDCRGISENVMLGQLAPMGTGNF 1465
Query: 1005 QL 1006
+
Sbjct: 1466 DV 1467
>gi|54291834|gb|AAV32202.1| putative RNA polymerase II [Oryza sativa Japonica Group]
Length = 1741
Score = 224 bits (570), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 140/417 (33%), Positives = 216/417 (51%), Gaps = 34/417 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ G++QD ++ K++ RDT + + +MN++ +
Sbjct: 459 RAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNIL---MWWE 515
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + + P I KP P+WTGKQV + +I PK +IR SG + + G
Sbjct: 516 DFDGKVPAPAILKPRPIWTGKQVFNLII----PKQINLIR----FSGWHSEAETRFITPG 567
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
DT V I GELLSG L KK G++ L+H +W+ G + A L L
Sbjct: 568 ------DTMVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNY 621
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L + GF++G+ D + + I+KA+ D + + Q ++
Sbjct: 622 WLLQNGFSIGIGDTIADAATMENINETISKAK----------------NDVKKLIKQFRD 665
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
R ++ +++ +++V N V +NNL+ M +G+KG+ +N
Sbjct: 666 NQLEAEAGRTTME-SFENRVNEVLNKARDVAGSSAEKSLSESNNLKAMATAGSKGTFINI 724
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q++ +GQ +EGKR + RTLP F + P + GFV+ ++ G+ PQEFFFH M
Sbjct: 725 SQMTACVGQQNVEGKRIPFGFTNRTLPHFTKNDYGPESRGFVENSYLRGLTPQEFFFHAM 784
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +IQ LYGEDG+D
Sbjct: 785 GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDA 841
Score = 109 bits (273), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 125/471 (26%), Positives = 192/471 (40%), Gaps = 120/471 (25%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
L SL PGE +G +AAQSIGEP+TQMTLNTFH+AG NVTLG+PRLREI+ +A K IK
Sbjct: 1021 LQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA-KNIK 1079
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCF 687
TPS+ + P++ K ++ A + ++ T+ V +I W + P + + F
Sbjct: 1080 TPSLSVHLKPEVNKKKELAKNVQCALEYTTLRSVTHATEI--WYDPDPLGTI-IEEDAEF 1136
Query: 688 IPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDD 747
+ ++ + P KI R IE +R+ M D
Sbjct: 1137 VQSYYEMPDEDIDPDKISPWLLR----------------------IELNREMMVD----- 1169
Query: 748 EGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDN 807
L D++ +K+N E D+D +S DDN
Sbjct: 1170 ---------KKLSMADIA--------------EKINHEFDDD---------LSCIFNDDN 1197
Query: 808 TSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNLFEEKESKH 867
+ R +I ++ ++D + ++ K + SN+ E
Sbjct: 1198 ADKLILRVRITNDEAQKGEIQDEYGEDDVFLKK--------------IESNMLTEMA--- 1240
Query: 868 LLKTDGINVNFISQYRHLLDLNKLYVND-----IHYMASTYGIEA----------ANRVI 912
L GIN FI + ++NK ND +M T G+ A R
Sbjct: 1241 LRGIPGINKVFIKEG----NVNKFEDNDGFKTEKGWMLDTEGVNLLAVMCHEDVDATRTT 1296
Query: 913 IREVKNVFAVYGIEVDPRHL--------------------SLVADYMTHSGTYVAMNRNG 952
+ V V GIE R L +++ D MT+ G +A+ R+G
Sbjct: 1297 SNHLIEVIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAVLCDTMTYRGHLMAITRHG 1356
Query: 953 IRLNPSF-IQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTG 1002
I N + + + +FE ++ + A++ D LR S +MLGQ GTG
Sbjct: 1357 INRNDTGPLMRCSFEETVDILLDAAVYAESDPLRGVSENIMLGQLAPIGTG 1407
>gi|120561219|gb|ABM26995.1| RNA polymerase II largest subunit, partial [Basidiobolus ranarum]
Length = 1018
Score = 224 bits (570), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 148/442 (33%), Positives = 226/442 (51%), Gaps = 36/442 (8%)
Query: 14 AEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCILN 73
AE + V Q + P+ P+ G++QD + K + RD+F+ +A MN++ + + +
Sbjct: 432 AEIKEICMVPKQIISPQSNKPVMGIVQDTLCGIRKFTKRDSFVDKALVMNIL---MWVAD 488
Query: 74 TEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYGL 133
+ P I KP PLWTGKQ+++ ++ PK+ I + D+K S
Sbjct: 489 WDGVIPTPAILKPQPLWTGKQLVTMIV----PKNINCITYHSAHPD--DEKSDISPG--- 539
Query: 134 VHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVY 193
DT V + +GEL+SGI+ KK G++ G VH + HG E A S + +
Sbjct: 540 -----DTKVVVENGELISGIVCKKTVGASNGGWVHVAMNEHGPEVAKRFFSGAQAVVNYW 594
Query: 194 LQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQEA 253
L + GF++G+ D + + T+ IN A++ +E +A L+ P + +
Sbjct: 595 LLQHGFSIGIGDTIADGKTTEHITETINSAKQRVSEIILSAQQDTLECAPGMTIRET--- 651
Query: 254 YASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTM 313
F +++R+ D + + E NN++ MV SG+KGS +N
Sbjct: 652 ------FENKVNRELNRARDHSGRSAEKSLKEE--------NNVKQMVVSGSKGSFINIS 697
Query: 314 QISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMA 373
Q+S +GQ +EGKR RTLP F + P + GFV+ ++ G+ PQEF+FH M
Sbjct: 698 QMSACVGQQNVEGKRIPFGFKFRTLPHFSKDDYGPESRGFVENSYLRGLTPQEFYFHAMG 757
Query: 374 GREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQ 433
GREGLIDTAVKT+ +GY+QR LVK LE + V YD TVR+S ++IQ YGEDG+D +
Sbjct: 758 GREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGNIIQFCYGEDGMDGCHVE 817
Query: 434 YLTDKQFSFLEDNIKWICSYKV 455
T D K+ SYKV
Sbjct: 818 KQTLDSIRMAND--KFEKSYKV 837
>gi|397135804|gb|AFO11397.1| RNA polymerase I, partial [Cyberlindnera americana]
Length = 870
Score = 224 bits (570), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 149/414 (35%), Positives = 219/414 (52%), Gaps = 42/414 (10%)
Query: 19 LMNVSS---QYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCILNTE 75
LMN+ + Q + P+ P G++QD + K++LRD+F+ + MN++Y I +
Sbjct: 313 LMNICAVPLQIVSPQSNKPCMGIVQDTLCGVRKMTLRDSFIEYDQMMNILY---WIPEWD 369
Query: 76 IRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYGLVH 135
PTI KP PLWTGKQ+LS I PK + R E G+T +
Sbjct: 370 GVIPAPTILKPKPLWTGKQMLSMTI----PKGIHLQRFDE-----------GTT----LL 410
Query: 136 AVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQ 195
+ D + + G++L G++DKK G+T GL+H V G L + K+ +L
Sbjct: 411 SPNDNGMLVIDGQILFGVVDKKTVGATNGGLIHTVMREKGPRACADLFGNIQKVVNFWLL 470
Query: 196 RVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQEAYA 255
GF++G+ D + ++ T+ I A+ E A L + L+E+
Sbjct: 471 HNGFSIGIGDTIADAGTMKEITEAIAIAKEKVEEVTLEAQQNKLTAKHGMT---LRES-- 525
Query: 256 SIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQI 315
F + R DK + +V L +GL NN++ MV +G+KGS +N Q+
Sbjct: 526 ----FEDNVIRYLNEARDKAGRSA-EVNL-KGL------NNVKQMVSAGSKGSFINIAQM 573
Query: 316 SCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGR 375
S +GQ +EGKR A + RTLP F + SP + GFV+ ++ G+ PQEF+FH M GR
Sbjct: 574 SACVGQQSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFYFHAMGGR 633
Query: 376 EGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
EGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S ++IQ +YGEDGLD
Sbjct: 634 EGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSMGNIIQFIYGEDGLDA 687
>gi|31127034|gb|AAF26651.2|AF139001_1 RNA polymerase II largest subunit [Polyxenus fasciculatus]
Length = 751
Score = 223 bits (569), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 152/417 (36%), Positives = 213/417 (51%), Gaps = 32/417 (7%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V Q + P+ P+ G++QD + + K++ RD FL + + MN+ L L
Sbjct: 163 RAEIEELAIVPRQIITPQSNRPVMGIVQDTLTAVRKMTKRDVFLDKDQMMNI----LMFL 218
Query: 73 NTEIRTLP-PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQY 131
+P P I KP P+WTGKQV S +I P + +IR D +
Sbjct: 219 PIWDGKMPQPAILKPKPVWTGKQVFSLII----PGNVNMIRTHSTHPDDEDDGPYKWISP 274
Query: 132 GLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFT 191
G DT V + HGEL+ GIL KK G++ L+H V G E A S + +
Sbjct: 275 G------DTKVLVEHGELMCGILCKKSLGTSAGSLLHIVMLELGWETAGLFYSHIQTVVN 328
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQ 251
+L G T+G+ D + Q+ + + I KA++ E A L+ P + L+
Sbjct: 329 NWLLLEGHTIGIGDTIADQQTYHEIQETIRKAKQDVIEVIEKAHNDELEPTP---GNTLR 385
Query: 252 EAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVN 311
+ F Q++R DK T Q L E NN + MV SGAKGS +N
Sbjct: 386 QT------FENQVNRILNDARDK-TGGSAQRSLSE-------FNNFKAMVVSGAKGSKIN 431
Query: 312 TMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHC 371
Q+ +GQ +EGKR RTLP F+ + P + GFV+ ++ G+ P EFFFH
Sbjct: 432 ISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHA 491
Query: 372 MAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
M GREGLIDTAVKT+ +GY+QR L+K +E + V YD TVR+S LIQ+ YGEDGLD
Sbjct: 492 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVTYDGTVRNSVGQLIQLRYGEDGLD 548
>gi|426201955|gb|EKV51878.1| hypothetical protein AGABI2DRAFT_215454, partial [Agaricus bisporus
var. bisporus H97]
Length = 1800
Score = 223 bits (569), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 150/416 (36%), Positives = 222/416 (53%), Gaps = 39/416 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S + V Q + P+ P+ G++QD + K +LRD FL N++ L +
Sbjct: 503 RAELSQVAWVPRQIISPQANKPVMGIVQDTLCGVRKFTLRDCFLDWNHVQNIL---LWVP 559
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + P I KP PLWTGKQ+LS I P+ I R + S
Sbjct: 560 DWDGTIPTPAILKPKPLWTGKQILSMTI----PRGINIHRSPDPKSS------------- 602
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ V+D + I +GEL+ GI+DKK G+TQ GLVH V+ G E L + L ++
Sbjct: 603 --NPVFDDGMLIENGELIFGIVDKKTVGATQGGLVHVVFREKGPEVTRQLFTGLQRVVNF 660
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + + T+ I + + T+ +A L P + ++E
Sbjct: 661 WLFHNGFSIGIGDTIADMKTMSYITQTIIERKAEVTKIIEDATHDRLKPKPGMT---IRE 717
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
++ S+ ++RQ +L + Q L E NN++ MV +G+KGS +N
Sbjct: 718 SFESM------VERQL-NLARDTSGQYAQKHLKED-------NNVKQMVVAGSKGSFINI 763
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EG+R RTLP F + +P + GFV+ ++ G+ PQEFFFH M
Sbjct: 764 SQMSVCVGQQSVEGRRIPFGFRHRTLPHFTKDDFTPESRGFVENSYLRGLTPQEFFFHAM 823
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
AGREGLIDTAVKT+ +GY+QR LVK LE + V YD TVR+S LIQ +YGEDG+D
Sbjct: 824 AGREGLIDTAVKTAETGYIQRRLVKALEDVMVCYDGTVRNSLGDLIQFVYGEDGMD 879
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 68/106 (64%), Gaps = 3/106 (2%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
S+ +PGE G L+AQSIGEP+TQMTLNTFH+AG NVTLG+PRL+EI+ +AT IKTP
Sbjct: 1063 SVVHPGEMCGTLSAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATN-IKTP 1121
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISP 675
S+ + P++ A + + + ++ V V+I W + P
Sbjct: 1122 SLTVYLEPEISVSPTLAKNVQQELAYTSLRTVTAAVEI--WYDPDP 1165
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 87/158 (55%), Gaps = 3/158 (1%)
Query: 851 KLLFLPSNLFEE-KESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAAN 909
K++ P E K+ + +L+TDG+N+ + + D + Y N + + GIEAA
Sbjct: 1298 KVMIRPDGTIETGKDKEWVLETDGVNLKTVMCIDGV-DFTRTYSNSCVEIFNVLGIEAAR 1356
Query: 910 RVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMP 968
I++E+++V G V+ RHL+L+ D MTH G+ +A+ R+GI R + + + +FE
Sbjct: 1357 AAIMKELRSVIEFDGSYVNYRHLALLCDLMTHRGSLMAITRHGINRADTGALMRCSFEET 1416
Query: 969 LEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+E + +A+ G +D + VM GQ GTG F++
Sbjct: 1417 VEVLMEAAAVGEKDDCHGIAENVMFGQMAPMGTGAFEV 1454
>gi|120561205|gb|ABM26988.1| RNA polymerase II largest subunit, partial [Neolecta vitellina]
Length = 997
Score = 223 bits (569), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 151/444 (34%), Positives = 231/444 (52%), Gaps = 64/444 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S + V Q + P+ P+ G++QD + + K + RD+FL + MN+ L +
Sbjct: 418 RAEISEICMVPRQIVSPQGNKPVMGIVQDTLCAIRKFTKRDSFLAQDMVMNI----LMWV 473
Query: 73 NTEIRTLP-PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQY 131
T+P P I KP PLW+GKQ+LS VI P+ I R+ E D+
Sbjct: 474 PEWDGTVPMPAIIKPKPLWSGKQILSMVI----PRGINITRNDE------DQTHNPPDDR 523
Query: 132 GLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFT 191
G+ I +GE++ G++DKK GST GL+H + G E + + +
Sbjct: 524 GM---------KIENGEIIYGVVDKKTVGSTPGGLIHIIMQEKGPEVCKGFFNGVQLVVN 574
Query: 192 VYLQRVGFTLGVRDIL--------VRQERDRKRTKIINKARRLGTEAACNALGLPLDTDP 243
+ GF++G+ D + ++++ R K+I R+ + G+ L
Sbjct: 575 YWFLHNGFSIGIGDTIADAHIMDIIQEKITEARAKVIEVTRKAQNNTLEPSPGMTLR--- 631
Query: 244 EIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVES 303
E SQ+++A + R + R + +GL E +NN++ MV +
Sbjct: 632 ETFESQVRQALNNA---RDEAGRSAE----------------KGLKE---SNNVKQMVSA 669
Query: 304 GAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQ 363
G+KGS +N Q+S +GQ +EG+R A RTLP F+ + SP + GFV+ ++ G+
Sbjct: 670 GSKGSFINISQMSACVGQQAVEGQRIAFGFKFRTLPHFVRDDYSPESRGFVENSYLRGLT 729
Query: 364 PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYG 423
PQEFFFH MAGREGLIDTAVKT+ +GY+QR LVK LE + V YD TVR+S ++Q+ YG
Sbjct: 730 PQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDIVQLAYG 789
Query: 424 EDGLDVTKRQY-------LTDKQF 440
EDGLD K ++ L+D+ F
Sbjct: 790 EDGLDGAKVEHQFLETLTLSDRNF 813
>gi|83320464|gb|ABC02859.1| RNA polymerase II largest subunit, partial [Scutellospora
heterogama]
Length = 639
Score = 223 bits (569), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 144/407 (35%), Positives = 215/407 (52%), Gaps = 33/407 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAE S + V Q + P+ P+ G++QD + + K + RD FLT+ MN++ + +L
Sbjct: 264 KAEISEICMVPKQVVSPQSNKPVMGIVQDTLCAVRKFTKRDCFLTKDLVMNIL---MWVL 320
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + R P I KP+PLWTGKQ+LS +I D +RH SG + + +
Sbjct: 321 DWDGRLPIPCILKPIPLWTGKQILSMIIPKGINSDN--LRH----SGHPENEHSDISP-- 372
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
DT V I GELL GI+ KK G+T GLVH + + GAE A L+ +
Sbjct: 373 -----GDTKVLIEDGELLCGIVCKKTVGATHQGLVHVIMNELGAEKAKDFLNGCQAVVNQ 427
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L + GF++G+ D + E + T I+ A++ E A L+ P + +
Sbjct: 428 WLLQNGFSIGIGDTIADDETMKNITNTISNAKQRVAEIIAEAQQDKLECAPGMTIRE--- 484
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
F +++++ + D + Q E NN++ MV +G+KGS +N
Sbjct: 485 ------TFEHRVNKELNTARDAAGKSAEQSLKEE--------NNVKQMVIAGSKGSFINI 530
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q++ +GQ +EGKR RTLP F + SP + GFV+ ++ G+ PQEFFFH M
Sbjct: 531 SQMTACVGQQNVEGKRIPFGFKFRTLPHFTKDDHSPESRGFVENCYLRGLTPQEFFFHAM 590
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQ 419
GREGLIDTAVKT+ +GY+QR LVK LE + V YD TVR+S ++Q
Sbjct: 591 GGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDIVQ 637
>gi|29539342|dbj|BAC67672.1| DNA-directed RNA polymerase II largest subunit [Cyanidioschyzon
merolae]
gi|449019055|dbj|BAM82457.1| RNA polymerase II largest subunit [Cyanidioschyzon merolae strain
10D]
Length = 1819
Score = 223 bits (569), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 143/427 (33%), Positives = 216/427 (50%), Gaps = 48/427 (11%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S ++AE LM V + P+ P+ G++QD ++ +LRDTFL NL+
Sbjct: 503 SEEVRAEIKELMAVPKNIVSPQANRPVMGIVQDSLLGCMLFTLRDTFLEEDTVFNLL--- 559
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGS 128
L + + + R P I KP PLWTGKQ+ S ++ D V + L +G D ++
Sbjct: 560 LHLPHFDGRIPAPAILKPRPLWTGKQIFSLLL-----PDGVNLER--LSNGHPDHER--- 609
Query: 129 TQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAK 188
+ DT V I++GEL++GI+DK+ GS+ L+H W G E L+S +
Sbjct: 610 ----TIMTPSDTRVLIQNGELITGIVDKRTVGSSAGSLIHVTWKESGPERTSQLISDIQL 665
Query: 189 LFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKAR-------RLGTEAACNALGLPLDT 241
L +L + G ++G+ D + + I +A+ RL E
Sbjct: 666 LINYWLMQNGMSIGIGDCIADAHTMAAINRTIQEAKDEVRQLIRLAQEGRL--------- 716
Query: 242 DPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMV 301
+ Q + F A ++R S DK + LP +NN++ MV
Sbjct: 717 -------ERQPGKTMLESFEACVNRVLNSARDKAGGFAQESLLP--------SNNIKRMV 761
Query: 302 ESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTG 361
+G+KGS +N QI +GQ +EGKR RTLP F+ ++SP A GFV+ ++ G
Sbjct: 762 SAGSKGSFINVSQIVACVGQQNVEGKRIPYGFRRRTLPHFVVDDLSPEARGFVENSYLRG 821
Query: 362 IQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVL 421
+ P+E FFH M GREGLIDTAVKT+ +GY+QR L+K +E + + YD TVR+S ++Q L
Sbjct: 822 LTPEEVFFHAMGGREGLIDTAVKTAETGYIQRRLMKAMEDIRIEYDGTVRNSLGDVMQFL 881
Query: 422 YGEDGLD 428
YG+D D
Sbjct: 882 YGDDAAD 888
Score = 125 bits (313), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 128/457 (28%), Positives = 213/457 (46%), Gaps = 31/457 (6%)
Query: 572 ANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSM 631
A PGE VG +AAQS+GEP+TQMTLNTFHFAG NVTLG+PRL+E++ +A +A KTPS+
Sbjct: 1072 ATPGEMVGAVAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKELINVARQA-KTPSV 1130
Query: 632 EIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISP-----EPHMNYQMKFC 686
+ +L K ++ AN + + + + DV+E I + + P E + +
Sbjct: 1131 TV-YLKSG-KDKELANIVQSELEQCRLRDVVESSAI--YFDPDPANTVVEADREWVRDYF 1186
Query: 687 FIPAHMYR-DKTSVKPSKIIDHFERKFLKELEVA-IAKRA-AQGLKNMNIEQSRDQMEDD 743
+P M R ++ S +I+ E K L ++ +A+R A+ ++++ S D E
Sbjct: 1187 DLPDEMDRPERLSPWLLRIVLSTEMMIDKRLRLSDVARRLRAEFGGDLSVVYSDDNAEQL 1246
Query: 744 VEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSERE 803
V G E ALG + E D+ + + + E + + E
Sbjct: 1247 VMHIRMAGDEYEKGALGVPILGESERLDDTLNLLGPGDMTAGGNQSLEA---LDSGTVEE 1303
Query: 804 EDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNLFEEK 863
+DD +IE ++ +K + + + + ++LF P
Sbjct: 1304 QDDVFLK-----RIELALLEDMQLKGIPGIRKVFLRQTQ--------RVLFDPEAGSFRS 1350
Query: 864 ESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
+ +L T+G + + + +D + N+I + GIEAA + + E+ V +
Sbjct: 1351 APEWVLDTEGTALLAVLSHPD-VDARRTISNEITEVLQVLGIEAARQALYNEMYAVLSFD 1409
Query: 924 GIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGRED 982
G V RHL+L+ + MT G + ++R GI RL + + TFE +E + A+ G D
Sbjct: 1410 GSSVGYRHLALLVEVMTCRGMLIPVSRFGINRLETGPLMRCTFEETVEILATAATFGVRD 1469
Query: 983 SLRAPSARVMLGQECRQGTGLFQLRNREKKKKKVEAK 1019
+ S V+LGQ + GTG F L E + E +
Sbjct: 1470 ACEGVSQAVILGQRAKVGTGAFSLTLDESVLNQAETE 1506
>gi|320580596|gb|EFW94818.1| RNA polymerase II largest subunit [Ogataea parapolymorpha DL-1]
Length = 1730
Score = 223 bits (569), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 144/424 (33%), Positives = 224/424 (52%), Gaps = 43/424 (10%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S+ +AE + V Q + P+ P+ G++QD + K++LRDTF+ + MN+ +
Sbjct: 496 SYETRAELEQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDTFIEYDQVMNMCF-- 553
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR-HGELLSGILDKKQFG 127
I N + P I KP PLW+GKQVLS I P+ + R G LLS
Sbjct: 554 -WIPNWDGVVPQPAILKPKPLWSGKQVLSMCI----PQGIFLQRLDGSLLSPK------- 601
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
D+ + I +GE++ G+++K GS+ GL+H V G + L +
Sbjct: 602 -----------DSGMLIVNGEIMFGVVNKATVGSSAGGLIHTVMREKGPKVCAQLFGNIQ 650
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIIS 247
K+ +L GF++G+ D + E + T+ I A+ E +A L+ +P +
Sbjct: 651 KVVNYWLLHNGFSIGIGDAIADSETMKTITETIAIAKEKVQEVIMDAQKNLLEAEPGMT- 709
Query: 248 SQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKG 307
R +++ LL++ ++ + E ++ +NN++ MV +G+KG
Sbjct: 710 ------------VRESFEQKVSKLLNEARDSAGKSA--ETSLKD--SNNVKQMVTAGSKG 753
Query: 308 STVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEF 367
S +N Q+S +GQ +EGKR + R+LP F + S + GFV+ ++ G+ PQEF
Sbjct: 754 SYINISQMSACVGQQIVEGKRINFGFADRSLPHFTKDDYSAESKGFVENSYLRGLTPQEF 813
Query: 368 FFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL 427
FFH MAGREGLIDTAVKT+ +GY+QR L+K LE + VHYD T R+S +IQ +YGEDGL
Sbjct: 814 FFHAMAGREGLIDTAVKTAETGYIQRRLLKALEDIMVHYDGTTRNSLGDVIQFIYGEDGL 873
Query: 428 DVTK 431
D T+
Sbjct: 874 DGTQ 877
Score = 96.7 bits (239), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 68/100 (68%), Gaps = 1/100 (1%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
L SL NPGE VGV+AAQSIGEP+TQMTLNTFH+AG NVTLG+PRL+EIL +A K +K
Sbjct: 1055 LKSLVNPGEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVA-KNVK 1113
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKI 667
TP++ + + +KA + ++ T+ +V +I
Sbjct: 1114 TPALTVYLKEEYASDIEKAKSIQSAIEHTTLKNVTASTEI 1153
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 80/151 (52%), Gaps = 2/151 (1%)
Query: 863 KESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 922
K+ + +L+TDG+N+ + + D + Y N + GIEAA + +E+ NV A
Sbjct: 1302 KKEEWVLETDGVNLADVLAVEGV-DTTRTYSNSFVEILFVLGIEAARSALYKEILNVIAF 1360
Query: 923 YGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPS-FIQKMTFEMPLEKIRQASMQGRE 981
G V+ RHL+L+ D MT+ G VA++R+G N + + + +FE +E + A
Sbjct: 1361 DGSYVNYRHLALLVDLMTYRGHLVAISRHGFNRNDTGALMRCSFEETVEILFDAGASAEL 1420
Query: 982 DSLRAPSARVMLGQECRQGTGLFQLRNREKK 1012
D+ S V+LGQ GTG F++ E+K
Sbjct: 1421 DTCEGVSQNVILGQLAPFGTGSFEVYLDEEK 1451
>gi|83320436|gb|ABC02845.1| RNA polymerase II largest subunit, partial [Entomophthora muscae]
Length = 1007
Score = 223 bits (569), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 157/459 (34%), Positives = 236/459 (51%), Gaps = 58/459 (12%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
SH ++E LM VS Q + P+ P+ G++QD + K + RD FL++ NLV
Sbjct: 419 SHEARSEVLELMMVSKQIVSPQGNKPVMGIVQDSLCGVRKFTKRDCFLSKEFVQNLV--- 475
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVI---INLTPKDKVIIRHGELLSGILDKKQ 125
L I + PP I P+PLWTGKQ+LS +I IN+T H + D+K
Sbjct: 476 LWIPDWNGYIPPPCIQFPVPLWTGKQLLSLLIPTGINMTTFHAA---HPD------DEKS 526
Query: 126 FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSC 185
+ S DT V I +GE+++GI+ K+ G+ GL+H +++ G L+
Sbjct: 527 YISP--------GDTRVEIVNGEIIAGIICKRTVGAAAGGLIHTIYNELGEVPTTRFLNG 578
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKAR----RLGTEAACNALG-LPLD 240
L + + F++ + D++ +E +K + I A+ R EA L LP
Sbjct: 579 TQTLVNYWFMQNSFSIAIGDMIADRETMKKVNQSIADAKIEVARCIEEAQRGTLQPLPGL 638
Query: 241 TDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVC---LPEGLIEPFPANNL 297
T E S++ +A L+K ++ ++ LPE NN+
Sbjct: 639 TVREAFESRVNQA------------------LNKARDDAGKMAERSLPE-------YNNI 673
Query: 298 QFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGR 357
+ MV SG+KGS VN Q++ +GQ +E R RTLP F Y+ P + GFV+
Sbjct: 674 KQMVVSGSKGSFVNISQMAACVGQQNVESARIPFGFQNRTLPHFTKYDQGPVSRGFVENS 733
Query: 358 FMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSL 417
++ G+ PQEFFFH M GREGLIDTAVKT+ +GY+QR LVK LE + V+YD TVR+S +
Sbjct: 734 YLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVNYDGTVRNSLGQI 793
Query: 418 IQVLYGEDGLDVT--KRQYLTDKQFSFLEDNIKWICSYK 454
+Q YGEDG+D ++Q + + S LE K++ + K
Sbjct: 794 VQFCYGEDGMDAAFIEKQRFDNLRLSNLEFENKYLLTVK 832
>gi|170100352|ref|XP_001881394.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644073|gb|EDR08324.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 1742
Score = 223 bits (569), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 150/416 (36%), Positives = 221/416 (53%), Gaps = 39/416 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S + V Q + P+ P+ G++QD + K +LRDTFL + N++ L +
Sbjct: 503 RAELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLDWNQVQNIL---LWVP 559
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ P I KP PLWTGKQ+LS I P+ I R + S
Sbjct: 560 EWDGSVPIPAILKPKPLWTGKQILSLAI----PRGINIHRSPDPKSS------------- 602
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ V+D V I +GEL+ GI++KK G++Q GLVH V+ G E L + L +
Sbjct: 603 --NPVFDDGVLIENGELIFGIVEKKTVGASQGGLVHVVFREKGPEATRQLFTGLQMVVNY 660
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + + T+ I ++ + +A L P + ++E
Sbjct: 661 WLFHNGFSIGIGDTIADRGTMSYITQTIADSKANVAKIINDATHDRLKAAPGMT---IRE 717
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
++ S+ ++RQ +L + Q L E NN++ MV +G+KGS +N
Sbjct: 718 SFESL------VERQL-NLARDTSGQYAQKHLKED-------NNVKQMVVAGSKGSFINI 763
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EG+R RTLP F + SP + GFV+ ++ G+ PQEFFFH M
Sbjct: 764 SQMSVCVGQQSVEGRRIPFGFRHRTLPHFTKDDFSPESRGFVENSYLRGLTPQEFFFHAM 823
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
AGREGLIDTAVKT+ +GY+QR LVK LE + V YD TVR+S LIQ +YGEDG+D
Sbjct: 824 AGREGLIDTAVKTAETGYIQRRLVKALEDVMVCYDGTVRNSLGDLIQFVYGEDGMD 879
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 68/106 (64%), Gaps = 3/106 (2%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
S+ +PGE G LAAQSIGEP+TQMTLNTFH+AG NVTLG+PRL+EI+ +AT IKTP
Sbjct: 1063 SVVHPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATN-IKTP 1121
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISP 675
S+ + P++ A + + + ++ V V+I W + P
Sbjct: 1122 SLTVHLDPEIAVSSSLAKNVQQELAYTSLRTVTAAVEI--WYDPDP 1165
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 81/145 (55%), Gaps = 2/145 (1%)
Query: 863 KESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 922
+E + +L+TDG+N+ + + D + Y N + + GIEAA I++E++ V
Sbjct: 1311 QEKEWVLETDGVNLKTVMCIDGV-DFKRTYSNSCVEIFNVLGIEAARAAIMKELRGVIEF 1369
Query: 923 YGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGRE 981
G V+ RHL+L+ D MTH GT +A+ R+GI R + + + +FE +E + +A+ G +
Sbjct: 1370 DGSYVNYRHLALLCDLMTHRGTLMAITRHGINRADTGALMRCSFEETVEILMEAAAVGEK 1429
Query: 982 DSLRAPSARVMLGQECRQGTGLFQL 1006
D + VM GQ GTG F++
Sbjct: 1430 DDCHGVAENVMFGQMAPMGTGAFEV 1454
>gi|399218278|emb|CCF75165.1| unnamed protein product [Babesia microti strain RI]
Length = 1801
Score = 223 bits (569), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 145/451 (32%), Positives = 233/451 (51%), Gaps = 50/451 (11%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
+H ++E LM Q + P+ P+ G++QD ++ +K +++DTFL+R MNL+
Sbjct: 539 THEARSEIKHLMLSPKQIVSPQGNRPVMGIVQDSLLGVSKFTMKDTFLSRDVLMNLLTW- 597
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVI----INLTPKDKVIIRHGELLSGILDKK 124
I + R P I+ P LWTGKQV+S ++ +L + + +R S +
Sbjct: 598 --IPYWDGRVPLPCIFYPQRLWTGKQVISILLSFDQAHLQNQININLRRTSGFSSV---- 651
Query: 125 QFGSTQYGLVHAV--WDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISL 182
T G V A+ D+ VTIR E L+G + K+ GS+ L+H +W G E
Sbjct: 652 ----TGQGSVRALEMIDSEVTIRQNEHLTGTICKRTVGSSSGSLIHVLWHEAGPERTKDF 707
Query: 183 LSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTD 242
++ L K+ +L GFT+ DI+ + +LG D
Sbjct: 708 ITTLQKVVNNWLIETGFTVSCSDIITADTT---------------LDMVAESLGAAKDRV 752
Query: 243 PEIISS------QLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANN 296
+++S + Q + F A+++++ L++ ++ + E L E NN
Sbjct: 753 QQLVSLAQRGKLECQPGKSLFESFEARVNKE----LNEAREQSGRI-VAESLDE---QNN 804
Query: 297 LQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDG 356
+ MV +G+KGS++N QI +GQ +EGKR R+LP F+ ++ P + GFV
Sbjct: 805 ILAMVNAGSKGSSINISQIIACVGQQNVEGKRIPFGFCDRSLPHFIKHDYGPESRGFVSN 864
Query: 357 RFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLS 416
+++G+ PQE FFH M GREG+IDTA KTS +GY+QR L+K +E + VHYD TVR+S
Sbjct: 865 SYLSGLTPQEMFFHAMGGREGIIDTACKTSETGYIQRRLIKAMEDIMVHYDGTVRNSGGD 924
Query: 417 LIQVLYGEDGLDVTKRQYLTDKQFSFLE-DN 446
++Q LYGEDG++ +++ D+ LE DN
Sbjct: 925 ILQFLYGEDGMNA---EFVEDQPLELLELDN 952
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 67/99 (67%), Gaps = 1/99 (1%)
Query: 569 LSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKT 628
LSL + GE VG +AAQSIGEP+TQMTLNTFHFAG G NVTLG+PRL+E++ + T +KT
Sbjct: 1123 LSLVHAGECVGAIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINVVTN-VKT 1181
Query: 629 PSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKI 667
PS+ + + + +++A + + T+ V+ ++
Sbjct: 1182 PSLTVHLEDAVARDQERAKDVQLQLEHTTLGHVVSYAQV 1220
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 83/149 (55%), Gaps = 8/149 (5%)
Query: 862 EKESKHLLKTDGIN---VNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKN 918
E+ + +L TDG N V I Q R+ +K NDI + + GIEAA R ++RE++
Sbjct: 1367 ERRNNWVLDTDGCNLEQVLPIPQVRY----SKTISNDITEIFNVLGIEAARRALLRELRA 1422
Query: 919 VFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASM 977
V + G V+ RHL+L+ D MTH G +++ R+GI R++ + K +FE LE + A+
Sbjct: 1423 VISFDGSYVNYRHLALLCDVMTHKGHLMSITRHGINRVDRGPLIKCSFEETLEILLDAAT 1482
Query: 978 QGREDSLRAPSARVMLGQECRQGTGLFQL 1006
D L + VM+GQ C GTG F +
Sbjct: 1483 FAVSDGLCGVTENVMMGQLCPLGTGCFDV 1511
>gi|397135930|gb|AFO11460.1| RNA polymerase I, partial [Zygoascus hellenicus]
Length = 871
Score = 223 bits (568), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 145/425 (34%), Positives = 219/425 (51%), Gaps = 43/425 (10%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S +AE S + V Q + P+ P+ G++QD + KLSLRDTFL + MN+++
Sbjct: 307 SQETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKLSLRDTFLDFDQVMNILF-- 364
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGS 128
+ N + P + KP P+WTGKQ++S I SGI ++
Sbjct: 365 -WVPNWDGVVPTPAVLKPRPMWTGKQMVSLAI----------------PSGIFMQR---F 404
Query: 129 TQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAK 188
+ ++ D + + GE++ G++DKK G+T GL+H + G A + K
Sbjct: 405 DEGNPANSPKDNGMLVYKGEIMYGVVDKKTVGATAGGLIHTIMREKGPYVAAGFFGNIQK 464
Query: 189 LFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISS 248
+ +L GF++G+ D + I++A++ +E A L +P +
Sbjct: 465 IVNFWLLHHGFSVGIGDTIADSATMTGIAATISEAKQKVSEYIMEAQENKLAPEPGMTLR 524
Query: 249 QLQEAYAS--IPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAK 306
+ E S + Q R R ++ L K +NN+ Q MV SG+K
Sbjct: 525 ESFEHNVSRVLNQARDTAGRSAETSL-KDSNNVKQ------------------MVTSGSK 565
Query: 307 GSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQE 366
GS +N Q+S +GQ +EGKR + R+LP F + SP + GFV+ ++ G+ PQE
Sbjct: 566 GSFINISQMSACVGQQIVEGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQE 625
Query: 367 FFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDG 426
FFFH MAGREGLIDTAVKT+ +GY+QR LVK LE + V YD T R+S ++IQ +YGEDG
Sbjct: 626 FFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMVQYDGTTRNSLGNIIQFVYGEDG 685
Query: 427 LDVTK 431
LD T+
Sbjct: 686 LDATQ 690
>gi|83320456|gb|ABC02855.1| RNA polymerase II largest subunit, partial [Boothiomyces
macroporosum]
Length = 999
Score = 223 bits (568), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 152/420 (36%), Positives = 218/420 (51%), Gaps = 35/420 (8%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
SH +AE L V Q + P+ +P+ G++QD + K + RDTFL R MNL+
Sbjct: 414 SHETRAEIQQLCMVPKQIVSPQKNAPVMGIVQDTLCGIRKFTKRDTFLHRDLLMNLL--- 470
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGS 128
+ + N + P I KP+PLWT KQV+S +I P+ +I H S D +
Sbjct: 471 MWVPNWDGIIPMPAILKPIPLWTAKQVMSIII----PQINMIGFH----STHPDDENTDI 522
Query: 129 TQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAK 188
+ DT V I +GELL+GIL KK GS+ G++H + HG E +
Sbjct: 523 SP-------GDTKVIIENGELLAGILCKKTVGSSASGVIHTSMNEHGPEITKDFFNGTQA 575
Query: 189 LFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISS 248
+ +L + GF++G+ D + + + I A++ + A L+ P +
Sbjct: 576 VVNYWLLQNGFSIGIGDTIADKNTMKAINDTIAHAKKEVNKIILKAQNNELECLPGMTIR 635
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGS 308
E+ ++ RA+ D KS Q L E NN++ MV +G+KGS
Sbjct: 636 GSFESLVNMELNRAR-DNAGKSA---------QKSLKE-------FNNVKQMVVAGSKGS 678
Query: 309 TVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFF 368
+N Q++ +GQ +EGKR RTLP F + SP + GFV+ ++ G+ PQEFF
Sbjct: 679 FLNISQMTACVGQQNVEGKRIPFGFKDRTLPHFTKDDHSPESRGFVENSYLRGLTPQEFF 738
Query: 369 FHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
FH M GREGLIDTAVKT+ +GY+QR LVK LE TV YD TVR+S +IQ YGEDG+D
Sbjct: 739 FHAMGGREGLIDTAVKTAETGYIQRRLVKALEDATVKYDGTVRNSLGDIIQFSYGEDGMD 798
>gi|444321244|ref|XP_004181278.1| hypothetical protein TBLA_0F02170 [Tetrapisispora blattae CBS 6284]
gi|387514322|emb|CCH61759.1| hypothetical protein TBLA_0F02170 [Tetrapisispora blattae CBS 6284]
Length = 1726
Score = 223 bits (568), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 146/420 (34%), Positives = 216/420 (51%), Gaps = 45/420 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S L V Q + + P G++QD + KL+LRD F+ + +NL+Y +
Sbjct: 498 RAELSQLCAVPLQIVSAQSNKPCMGIVQDTLCGIRKLTLRDNFIEFDQVLNLLY---WVP 554
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + P I KP PLW+GKQ+LS I PK + R E + + K
Sbjct: 555 DWDGVIPTPAILKPKPLWSGKQILSIAI----PKGIHLQRFDEGTTFLSPK--------- 601
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
D + I G+++ G++DKK GS+ GL+H V G + L S + K+
Sbjct: 602 ------DNGMLIIDGQIIFGVVDKKTVGSSSGGLIHVVTREKGPQICAKLFSNIQKVTNY 655
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+ GF+ G+ D + E R+ T I +A+R E +E
Sbjct: 656 WFLHNGFSTGIGDTIADGETMREITGTIAEAKRKVEEVT-------------------KE 696
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPF---PANNLQFMVESGAKGST 309
A A++ + + + +S D V +N+ G + NN++ MV +G+KGS
Sbjct: 697 AQANLLTAKHGMTLR-ESFEDNVVRFLNEARDKAGRLAEVNLNDTNNVKQMVSAGSKGSF 755
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+S +GQ +EGKR A RTLP F + SP + GFV+ ++ G+ PQEFFF
Sbjct: 756 INIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFF 815
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H M GREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S ++IQ +YGEDG+D
Sbjct: 816 HAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDSTTRNSLGNVIQFVYGEDGIDA 875
Score = 141 bits (356), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 130/449 (28%), Positives = 209/449 (46%), Gaps = 69/449 (15%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
L S+ +PGE VGVLAAQSIGEP+TQMTLNTFHFAG VT G+PRL+EIL +A K +K
Sbjct: 1054 LRSVVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVA-KNMK 1112
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNY------ 681
TPS+ P ++KA + ++ T L+ V + + P+P
Sbjct: 1113 TPSLTAYLEPAYAADQEKAKLIRSAIEHTT----LKSVTVASEIYYDPDPRTTVIAEDEE 1168
Query: 682 --QMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQ 739
Q+ F + + P +L LE+ RAA K++ + Q ++
Sbjct: 1169 IMQLHFSLMDEETEKSLDQQSP----------WLLRLEL---DRAAMNDKDLTMGQVGEK 1215
Query: 740 MEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERM 799
+ + +D + V E+ E+ ++ +V + + D E +E+ M
Sbjct: 1216 IRETFRND--------------LFVIWSEDNAEKLIIRC--RVVRPKALDAETEAEEDHM 1259
Query: 800 SEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLP-SN 858
+ KIE N+ ++ V N +V YD+K +P ++
Sbjct: 1260 LK--------------KIENTMLENITLRGVENIERVVM-MKYDRK---------IPGTS 1295
Query: 859 LFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKN 918
EK + +L+TDG+N+ + +D +++Y N + GIEA + +EV N
Sbjct: 1296 GAYEKVPEWVLETDGVNLLEVMTVPG-VDASRIYTNSFIDITEVLGIEAGRAALYKEVYN 1354
Query: 919 VFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASM 977
V A G V+ RH++L+ D MT +G+ ++ R+G R N + + +FE +E + +A
Sbjct: 1355 VIASDGSYVNYRHMALLVDVMTTNGSLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGA 1414
Query: 978 QGREDSLRAPSARVMLGQECRQGTGLFQL 1006
D R S V+LGQ GTG F +
Sbjct: 1415 SAELDDCRGVSENVILGQMAPIGTGSFDV 1443
>gi|397135836|gb|AFO11413.1| RNA polymerase I, partial [Torulaspora delbrueckii]
Length = 871
Score = 223 bits (568), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 146/422 (34%), Positives = 216/422 (51%), Gaps = 47/422 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S L V Q + P+ P G++QD + KL+LRD F+ + +N++Y +
Sbjct: 311 RAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDNFIELDQVLNMLY---WVP 367
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + P I KP PLWTGKQ+LS I PK + R E G+T
Sbjct: 368 DWDGVIPTPAIIKPKPLWTGKQILSIAI----PKGIHLQRFDE-----------GTT--- 409
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ + D + I G+++ G++DKK GS+ GL+H V G + L + K+
Sbjct: 410 -LLSPKDNGMLIIDGKIIFGVVDKKTVGSSSGGLIHVVTREKGPQICARLFGNIQKVVNY 468
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARR----LGTEAACNALGLPLDTDPEIISS 248
+ GF+ G+ D + + R+ T+ I A++ + EA N L
Sbjct: 469 WFLHNGFSTGIGDTIADGQTMREITETIADAKKKVEDVTKEAQANLL------------- 515
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGS 308
+ F + R DK + +V L + NN++ MV +G+KGS
Sbjct: 516 TAKHGMTLRESFEDNVVRFLNEARDK-AGRLAEVNLKD-------LNNVKQMVSAGSKGS 567
Query: 309 TVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFF 368
+N Q+S +GQ +EGKR A RTLP F + SP + GFV+ ++ G+ PQEFF
Sbjct: 568 FINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFF 627
Query: 369 FHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
FH M GREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S ++IQ +YGEDG+D
Sbjct: 628 FHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDSTTRNSLGNVIQFVYGEDGMD 687
Query: 429 VT 430
+
Sbjct: 688 AS 689
>gi|120561197|gb|ABM26984.1| RNA polymerase II largest subunit, partial [Sclerotinia
sclerotiorum]
Length = 1011
Score = 223 bits (568), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 141/416 (33%), Positives = 214/416 (51%), Gaps = 37/416 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + P+ PL G++QD + K+ RD F+T+ MN++ L +
Sbjct: 427 RAEVMNLCMVPLNIVSPQRNGPLMGIVQDTLAGVYKICRRDVFITKEHLMNIL---LWVP 483
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + P I KP P WTGKQ++S +I PK I++ +
Sbjct: 484 DWDGVIPQPAILKPRPRWTGKQIVSLII----PK-------------IVNSYNASKDKEH 526
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
L + D I+ G+L+ G++ KK G++ G+VH V++ G + A++ + ++
Sbjct: 527 LHAPLNDDGCLIQEGQLMYGLMAKKNVGASGNGIVHIVFNEQGPDAAMAFFNGCQRVINY 586
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + +E + K I K + TE A L++ P +
Sbjct: 587 WLLHNGFSIGIGDTIPNKETIEQIEKAIAKQKAEVTELVEKATSNELESLPGM------- 639
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
R + Q L++ N +GL++ NN M SG+KGST+N
Sbjct: 640 ------NVRETFESQVSKALNEARNTAGTKT-EDGLLD---INNAVQMARSGSKGSTINI 689
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S L+GQ +EGKR RTLP F + SP + GFV+ ++ G+ P EFFFH M
Sbjct: 690 SQMSALVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAM 749
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
AGREGLIDTAVKT+ +GY+QR LVK LE + YD TVR+S ++Q +YGEDGLD
Sbjct: 750 AGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLD 805
>gi|397135802|gb|AFO11396.1| RNA polymerase I, partial [Wickerhamomyces canadensis]
Length = 871
Score = 223 bits (568), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 150/414 (36%), Positives = 216/414 (52%), Gaps = 44/414 (10%)
Query: 19 LMNVSS---QYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCILNTE 75
LMN+ + Q + P+ P G++QD + K++LRD F+ + MN +Y I +
Sbjct: 314 LMNICAVPLQIVSPQSNKPCMGIVQDTLCGVRKMTLRDVFIEYDQMMNTLY---WIPDWN 370
Query: 76 IRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGI-LDKKQFGSTQYGLV 134
P I KP PLWTGKQ+LS I + GI L + G+T +
Sbjct: 371 GVIPQPAILKPKPLWTGKQLLSVAIPD----------------GIHLQRLDEGTT----M 410
Query: 135 HAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYL 194
+ D + I GE+L G++DKK G+T GL+H V G L L K+ +L
Sbjct: 411 ASPKDNGMLIVDGEILFGVVDKKTVGATNGGLIHTVMREKGPRACADLFGKLQKVVNFWL 470
Query: 195 QRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQEAY 254
GF++G+ D + ++ T+ I A+ E A L + L+E+
Sbjct: 471 LHNGFSIGIGDTIADASTMKEITEAIAIAKEKVDEVTLEAQQNKLTAKHGMT---LRES- 526
Query: 255 ASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQ 314
F + R DK + +V L +GL NN++ MV +G+KGS +N Q
Sbjct: 527 -----FEDNVIRYLNEARDKAGRSA-EVNL-KGL------NNVKQMVSAGSKGSFINIAQ 573
Query: 315 ISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAG 374
+S +GQ +EGKR A + RTLP F + SP + GFV+ ++ G+ PQEF+FH M G
Sbjct: 574 MSACVGQQSVEGKRIAFGFADRTLPHFAKDDYSPESKGFVENSYLRGLTPQEFYFHAMGG 633
Query: 375 REGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
REGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S ++IQ +YGEDGLD
Sbjct: 634 REGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSTGNIIQFVYGEDGLD 687
>gi|340517293|gb|EGR47538.1| predicted protein [Trichoderma reesei QM6a]
Length = 1755
Score = 223 bits (567), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 153/428 (35%), Positives = 216/428 (50%), Gaps = 54/428 (12%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S +AE L V + + P+ PL G++QD + KL RDTFL + + MNL+
Sbjct: 508 SEETRAEVKELCLVPNNIVSPQKNGPLMGIVQDSLAGAYKLCRRDTFLDKNQVMNLM--- 564
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGS 128
L + N + P I KP P WTGKQ++S VI PK+ L DK
Sbjct: 565 LWVPNWDGVIPQPAILKPRPRWTGKQIISMVI----PKEIS-------LHAPEDKSDSPL 613
Query: 129 TQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAK 188
GL+ I+ GEL+ G++ KK GS G++H ++ G E A++ L+ + +
Sbjct: 614 KDAGLL---------IQAGELMYGLMKKKNIGSASGGVIHLCYNELGPEGAMAFLNGVQQ 664
Query: 189 LFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKAR----RLGTEAACNALGLPLDTDPE 244
+ T +L + G ++G+ D + ++ K I+ + RL A N L
Sbjct: 665 VVTYWLLQNGHSIGIGDTIPDKQTIEKVQVHIDTQKAEVARLTAMATNNEL--------- 715
Query: 245 IISSQLQEAYASIPQFRAQIDRQYKSLLDKV---TNNINQVCLPEGLIEPFPANNLQFMV 301
EA + RA + + L+ Q L + +NN M
Sbjct: 716 -------EALPGM-NVRATFENKVSMALNMARDQAGTTTQKSLKD-------SNNAVTMA 760
Query: 302 ESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTG 361
ESG+KGS++N Q++ L+GQ +EGKR RTLP F + SP A GFV+ ++ G
Sbjct: 761 ESGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRG 820
Query: 362 IQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVL 421
+ P EFFFH MAGREGLIDTAVKT+ +GY+QR LVK LE L YD TVR+S +IQ L
Sbjct: 821 LTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLNAQYDGTVRNSLGDIIQFL 880
Query: 422 YGEDGLDV 429
YGEDGLD
Sbjct: 881 YGEDGLDA 888
Score = 97.4 bits (241), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 65/88 (73%), Gaps = 3/88 (3%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
S NPGE VGVLAAQSIGEP+TQMTLNTFHFAG NVTLG+PRL+EIL +A K IKTP
Sbjct: 1070 SFVNPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLA-KNIKTP 1128
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRIT 657
SM + +L D P +++ + +S+ T
Sbjct: 1129 SMAV-YL-DTPLAKQEQAKKLRSLVEYT 1154
Score = 77.0 bits (188), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 67/122 (54%), Gaps = 1/122 (0%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D + Y ND+ + +GIE +++E+ V A G V+ RH++L+ D MT+ G+
Sbjct: 1342 VDPTRTYTNDLWQIIEVFGIEGTRAALVKELTAVLAFDGSYVNHRHIALLCDVMTYRGSI 1401
Query: 946 VAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
A+ R+GI R + + + +FE +E + +A+ G D R S VMLGQ GTG F
Sbjct: 1402 SAVTRHGINRADTGALMRCSFEETVEILLEAAATGELDDCRGISENVMLGQMAPMGTGNF 1461
Query: 1005 QL 1006
+
Sbjct: 1462 DV 1463
>gi|253745241|gb|EET01289.1| RNA polymerase AI large subunit [Giardia intestinalis ATCC 50581]
Length = 2144
Score = 223 bits (567), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 153/433 (35%), Positives = 212/433 (48%), Gaps = 76/433 (17%)
Query: 81 PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYGLVHAVWDT 140
P I P WTGK V+S+++ ++ + + I G + + F T+
Sbjct: 946 PAIIYPAARWTGKAVISSMLHKVSCQREPINYVGNVKVPTDIWRPFQETE---------A 996
Query: 141 HVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFT 200
V I LL+GI+DK+ ST +GL HA+++ +G LS +L T LQR GFT
Sbjct: 997 KVIIIDNALLTGIVDKQHVASTPHGLAHAIFELYGHNRCGWFLSNFGRLATYVLQRHGFT 1056
Query: 201 LGVRDILVRQERDRKRTKIINKARRLGT----EAAC------NALGLPLDTDPEI----- 245
V D+ +R +R R ++ N+ G E C LG TD
Sbjct: 1057 CSVEDMALRDATERARYRLCNEVLASGAIRTAEFLCEYLTVTGMLGNLQGTDANFLMQFA 1116
Query: 246 -----------------ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGL 288
I S L+++ + A++D + + +T N+ + C P L
Sbjct: 1117 DKGSFNLKRLTEKDRLRIYSILRDSLSLDTTIEARLDNYISNEANLITTNLMKTCNPSNL 1176
Query: 289 I----------EPF-------PA---------------NNLQFMVESGAKGSTVNTMQIS 316
+ P+ P+ N L +MV SGAKGSTVN ++
Sbjct: 1177 VLKMHSSASSNNPYGTLKVGTPSRAYLCSRNMASQKSINCLAYMVLSGAKGSTVNLQMMT 1236
Query: 317 CLLGQIELEGKRPAMMVSGRTLPSFLPYE-VSPRAGGFVDGRFMTGIQPQEFFFHCMAGR 375
LGQ LEG+R +G+TLPS +PYE GG+V RF+TGI+P FFFHC AGR
Sbjct: 1237 TCLGQQNLEGRRVPSTQTGKTLPSHIPYEHCEFIQGGYVIDRFLTGIRPSSFFFHCQAGR 1296
Query: 376 EGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYL 435
EGLIDTA+KT+ SGY QR LVK+LEGL V YD TVR SD L+Q+LYG DG+D TK YL
Sbjct: 1297 EGLIDTAIKTASSGYFQRVLVKNLEGLVVAYDGTVRRSDNMLVQLLYGGDGVDTTKTSYL 1356
Query: 436 TDKQFSFLEDNIK 448
++F F+ N K
Sbjct: 1357 --QEFDFMYRNQK 1367
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 70/122 (57%)
Query: 885 LLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGT 944
++ + +Y N+I+ + YGIEAA II E+ VF+ Y IEVD RHLSL+AD MT SG
Sbjct: 2019 FINFDNIYTNNINQIFEIYGIEAARSSIIEEIHRVFSTYHIEVDERHLSLIADSMTLSGC 2078
Query: 945 YVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
+NR +R I K +FE I ++ DSLRAP+ V +GQ QGTG F
Sbjct: 2079 VRGLNRLEMRHQTEEILKASFESACTSIAAGALTSGFDSLRAPAGAVTVGQYPFQGTGSF 2138
Query: 1005 QL 1006
L
Sbjct: 2139 DL 2140
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 61/92 (66%), Gaps = 3/92 (3%)
Query: 545 KYTKGRTDASHVDKFYDMIFYKNLL-SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGR 603
K TK + S ++ ++ Y + SL PG VGV+AAQS GEPSTQ+TLNTFH AG
Sbjct: 1577 KQTKAMGELSFDPVYFRLLAYTKFIRSLIAPGSAVGVIAAQSTGEPSTQLTLNTFHLAGH 1636
Query: 604 GDMNVTLGIPRLREILMMATKAIKTPSMEIPF 635
G +N T+G+PRLREI+M T++ +P + + F
Sbjct: 1637 GGVNATMGVPRLREIIM--TRSTASPIITMSF 1666
>gi|162606436|ref|XP_001713248.1| DNA-directed RNA polymerase I chain-like protein [Guillardia theta]
gi|12580714|emb|CAC27032.1| DNA-directed RNA polymerase I chain-like protein [Guillardia theta]
Length = 1434
Score = 223 bits (567), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 138/444 (31%), Positives = 228/444 (51%), Gaps = 35/444 (7%)
Query: 14 AEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCILN 73
+E+ ++ V++Q +P +G PL GLIQD +ISG L+ +DTF + ++ + N
Sbjct: 593 SESLYIAYVTNQNTIPSNGLPLRGLIQDQIISGVLLTKKDTFFNKNCID--IFLSNVFSN 650
Query: 74 TEIRTLP-PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
E L P+I KP LWTGKQ+ S I+ T K K + F T+
Sbjct: 651 KERDILELPSIIKPNFLWTGKQIFS--ILCKTNKFK-------------QRNFFLETKTK 695
Query: 133 LVHAVW---DTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L ++ + + R G LL G++D Q G ++G HA ++ G+ +++S L+
Sbjct: 696 LPSSIIGSDENRILFRKGILLKGVIDSSQLGRNKFGFFHAFYENFGSVTGDTIMSRLSIF 755
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLG---TEAACNALGLPLDTD---- 242
F+++ + ++D ++ + ++K I +L + + + GL +D+
Sbjct: 756 FSIFQVFYNHSCSLQDFFLKTKMEKKLKNIYKLYSKLSLALIKKSFSIFGLCIDSRIIEE 815
Query: 243 ----PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQ 298
I+S L ++ + Y +++ + NI + GL +N
Sbjct: 816 NSFYKHILSKSLISNSNQKSVILTKLQKSYLNIIYSL--NIENF-IRLGLEIINTSNGFL 872
Query: 299 FMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRF 358
M+ G+KGS +N QI LLGQ ELEG +G+TLP FL + P + GF+ RF
Sbjct: 873 KMISYGSKGSNINLFQICLLLGQTELEGSCIPKTFTGKTLPGFLFNSLDPISNGFIPERF 932
Query: 359 MTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLI 418
TGI P +FFHCMAGREGL+DTA+KTS+SGY+QR ++KHLE L ++YD T+R S +
Sbjct: 933 FTGIHPNCYFFHCMAGREGLLDTAIKTSQSGYIQRNIIKHLENLKINYDFTLRMSHNKIN 992
Query: 419 QVLYGEDGLDVTKRQYLTDKQFSF 442
++ +DG +T +++ ++ F
Sbjct: 993 SFIFSDDGQRITSIDFISKIRWKF 1016
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 83/155 (53%), Gaps = 2/155 (1%)
Query: 854 FLPSNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVII 913
FL SN+ + +K + + G N+ +++++ +DI M+ +GIEA ++
Sbjct: 1281 FLLSNIILDYFTKRI-QISGNNIEIFFSLSEFFKIDEIFTSDILKMSIIFGIEAGREILT 1339
Query: 914 REVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIR 973
E+ N+F GI + +H+ ++DYMT G NRN ++ IQ++++E L ++
Sbjct: 1340 IELMNIFKNQGIVISNKHIDTISDYMTRLGYLRPFNRNYMKEEAG-IQEISYETALLHLK 1398
Query: 974 QASMQGREDSLRAPSARVMLGQECRQGTGLFQLRN 1008
+ ++ + +S+ S ++ G C GTGLF++ N
Sbjct: 1399 KYALGKKIESIECISDKIAFGLPCNIGTGLFEINN 1433
Score = 70.1 bits (170), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 48/72 (66%), Gaps = 6/72 (8%)
Query: 559 FYDMIFYKNLLS------LANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGI 612
F + Y+N+L+ L PGE+ G+L Q+IGEP TQMTLNTFH+AG+ + G+
Sbjct: 1064 FGSFVSYQNILNSNYFENLIEPGESTGILCGQAIGEPCTQMTLNTFHYAGKISSHGKQGL 1123
Query: 613 PRLREILMMATK 624
PRL+E+L+ +K
Sbjct: 1124 PRLKEMLLYNSK 1135
>gi|397135816|gb|AFO11403.1| RNA polymerase I, partial [Candida boidinii]
Length = 870
Score = 223 bits (567), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 140/423 (33%), Positives = 217/423 (51%), Gaps = 41/423 (9%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S+ +AE S + V Q + P+ P+ G++QD + K++LRD+F+ + MN+ Y
Sbjct: 307 SYETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDSFIEYDQVMNICY-- 364
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGS 128
I N + P I KP PLW+GKQ+LS I PK GI ++ GS
Sbjct: 365 -WIPNWDGVVPQPAILKPKPLWSGKQMLSMCI----PK------------GIFLQRLDGS 407
Query: 129 TQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAK 188
+ D+ + I +GE++ G+++K G+T GL+H G + + K
Sbjct: 408 -----LLCPKDSGMLIINGEIMFGVVNKATVGATAGGLIHTTMREKGPYVCAGMFGNIQK 462
Query: 189 LFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISS 248
+ +L GF++G+ D + + T+ I A+ + +A L+ +P +
Sbjct: 463 VVNFWLLHNGFSIGIGDAIADGATMKTITETIAVAKEKVQQVITDAHKNLLEPEPGMT-- 520
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGS 308
+ ++ + K+ N +NN++ MV +G+KGS
Sbjct: 521 ---------------VRESFEQKVSKILNEARDAAGKSAEASLKDSNNVKQMVTAGSKGS 565
Query: 309 TVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFF 368
+N Q+S +GQ +EGKR S R+LP F + S + GFV+ ++ G+ PQEFF
Sbjct: 566 YINISQMSACVGQQIVEGKRIRFGFSDRSLPHFTKDDYSAESKGFVENSYLRGLTPQEFF 625
Query: 369 FHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
FH MAGREGLIDTAVKT+ +GY+QR LVK LE + VHYD ++R+S +IQ LYGEDGLD
Sbjct: 626 FHAMAGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDSSIRNSVGDIIQFLYGEDGLD 685
Query: 429 VTK 431
T+
Sbjct: 686 ATQ 688
>gi|341859020|gb|AEK97420.1| ribosomal polymerase II largest subunit [Isaria farinosa]
Length = 954
Score = 223 bits (567), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 154/425 (36%), Positives = 223/425 (52%), Gaps = 56/425 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + + P+ PL G++QD + KL RDTFL + NL+ L +
Sbjct: 416 RAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFLEKELVQNLM---LWVP 472
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVI---INLTPKDKVIIRHGELLSGILDKKQFGST 129
N + P I KP P WTGKQ++S VI I+L K+ DK
Sbjct: 473 NWDGVIPQPAILKPRPRWTGKQIISMVIPAEISLYSKE--------------DK------ 512
Query: 130 QYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L + + DT + I+ GEL+ G+L KK G+ G++H ++ G + A++ L+ + ++
Sbjct: 513 ---LDNPLKDTGMLIQSGELMYGLLKKKYVGAAAGGIIHLCYNELGPDGAMAFLNGVQQV 569
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKAR----RLGTEAACNAL-GLPLDTDPE 244
T +L G ++G+ D + +E K I++ + RL +A N L LP
Sbjct: 570 VTYWLLNTGHSIGIGDTIPDRETIEKIQAHIDEHKAEVARLTAQATANELEALPGMNVRA 629
Query: 245 IISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESG 304
+++ A ++ + +A Q KSL D +NN M ESG
Sbjct: 630 TFENKVSMAL-NMARDQAGTSTQ-KSLKD--------------------SNNAVTMSESG 667
Query: 305 AKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQP 364
+KGS++N Q++ L+GQ +EGKR RTLP F + SP A GFV+ ++ G+ P
Sbjct: 668 SKGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTP 727
Query: 365 QEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGE 424
EFFFH MAGREGLIDTAVKT+ +GY+QR LVK LE L+ YD TVR+S +IQ LYGE
Sbjct: 728 SEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDIIQFLYGE 787
Query: 425 DGLDV 429
DGLD
Sbjct: 788 DGLDA 792
>gi|13274097|emb|CAC33855.1| RNA polymerase II largest subunit [Cystosporogenes operophterae]
Length = 982
Score = 223 bits (567), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 173/640 (27%), Positives = 304/640 (47%), Gaps = 104/640 (16%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
K+E L +VS Q + P+ P+ G++QD ++ ++RD+F RAE M+L+Y L +
Sbjct: 390 KSELCSLTSVSKQIVSPQSNKPVIGIVQDTLVGAFLFTIRDSFFKRAEAMSLLYN-LNVF 448
Query: 73 NTE----IRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGS 128
+ I + PTI +P+ LWTGKQ+ S ++ + + + + +S L++ + +
Sbjct: 449 GKKNQDFIDFMKPTILEPVELWTGKQIFSAILPRIFYDRQANVGIDQDISDRLNENKEWN 508
Query: 129 TQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAK 188
T D+ I++G LL+G +D G+ Q G++ +++ G+ A++ + + +
Sbjct: 509 TM-----NCTDSRTIIKNGVLLAGRIDVVSMGTKQGGIIQIIYNDCGSNAALNFIDSIQR 563
Query: 189 LFTVYLQRVG-FTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLP----LDTDP 243
L +L + F++G+ D + D + + K + + A + + + LD P
Sbjct: 564 LINYFLLHISSFSIGIGDCIA----DSRTLDVCRKTVKKAMDEADDIITITKRNELDKLP 619
Query: 244 EIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVES 303
+ S E+ ++ +A R ++ D+ + + LI P NN++ MV S
Sbjct: 620 GMSLSATFESKVNVILNKA---RNIPTISDETSERTGKKSFRSNLISP--NNNMKSMVLS 674
Query: 304 GAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQ 363
G+KGS +N QI+ +GQ +EGKR + R+LP F Y+ + R+ GFV +++G+
Sbjct: 675 GSKGSYINISQITTCMGQQNVEGKRIPFGFNERSLPHFYKYDYTARSRGFVQNSYISGMW 734
Query: 364 PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYG 423
P EFFFH M G EG+IDT++KT+ +GY+QR LVK LE T +D +VR+ + Q YG
Sbjct: 735 PDEFFFHAMGGGEGIIDTSIKTAETGYIQRRLVKALEDATAQHDYSVRNGSGDIYQFKYG 794
Query: 424 EDGLDVTKRQYLT-------DKQF--SFLEDN---------------------------- 446
+D D T + ++ DK F F ++N
Sbjct: 795 DDSFDATHLENISLDLADFKDKYFIDMFGDENYAIKPSQVSSDVYEMMRDDLDLQKLLDA 854
Query: 447 -IKWICSYKVILNLLKKHPLSLALLLL---------LTFKSSGKPNFIFSPHRTKFTMD- 495
+++ + + +++ P+++ +L LT ++S K N SP+ ++D
Sbjct: 855 EYEYLYTNRALMSGFYSSPVNIGRILSNKIYLKNHELTVENS-KNNRTISPYVILSSLDA 913
Query: 496 LLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASH 555
+ +LD R KF L A+F I + +A +K K R +A+
Sbjct: 914 AMTGNKKLDYYIRISLNIKFVLLNLSL-------ANFNGILDEIA---LKIMKSRVNANE 963
Query: 556 VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTL 595
+ VG LAAQS+GEP+TQMTL
Sbjct: 964 M---------------------VGTLAAQSVGEPATQMTL 982
>gi|406603917|emb|CCH44586.1| DNA-directed RNA polymerase II subunit [Wickerhamomyces ciferrii]
Length = 1688
Score = 222 bits (566), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 147/418 (35%), Positives = 214/418 (51%), Gaps = 50/418 (11%)
Query: 19 LMNVSS---QYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCILNTE 75
LMN+++ Q + P+ P G++QD + K++LRD+F+ + MN++Y I
Sbjct: 460 LMNIAAVPLQIVSPQSNKPCMGIVQDTLAGVRKMTLRDSFIDYDQMMNILY---WIPGWN 516
Query: 76 IRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYGLVH 135
PTI KP PLWTGKQ+LS I PK + R+ E G+T +
Sbjct: 517 GVVPQPTILKPKPLWTGKQMLSMAI----PKGIHMQRYDE-----------GTT----LL 557
Query: 136 AVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQ 195
+ D + + G+++ G++DKK G+T GL+H V G + L L K+ +
Sbjct: 558 SPNDNGMMVVDGQIMFGVVDKKTVGATNGGLIHTVMREKGPKVCSELFGSLQKVVNFWFL 617
Query: 196 RVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQEAYA 255
GF++G+ D + D K I A L E D E ++L +
Sbjct: 618 HNGFSIGIGDTIA----DASTMKEITDAIALAKEKVD-------DVTLEAQQNKLTAKHG 666
Query: 256 SI--PQFRAQIDRQYKSLLDKV--TNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVN 311
F + R DK + +N L NN++ MV +G+KGS +N
Sbjct: 667 MTLRESFEDNVIRYLNEARDKAGRSAEVNLKSL----------NNVKQMVSAGSKGSFIN 716
Query: 312 TMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHC 371
Q+S +GQ +EGKR A + RTLP F + SP + GFV+ ++ G+ PQEF+FH
Sbjct: 717 IAQMSACVGQQSVEGKRIAFGFADRTLPHFAKDDYSPESKGFVENSYLRGLTPQEFYFHA 776
Query: 372 MAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
M GREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S ++IQ +YGEDGLD
Sbjct: 777 MGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGNIIQFIYGEDGLDA 834
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 135/440 (30%), Positives = 211/440 (47%), Gaps = 54/440 (12%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
S+ +PGE VGV+AAQSIGEP+TQMTLNTFHFAG VT G+PRL+EIL +A K +KTP
Sbjct: 1015 SVVHPGEMVGVVAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVA-KNMKTP 1073
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCFIP 689
S+ + P+ +++A + ++ T L+ V I + PEP
Sbjct: 1074 SLTVYLDPEYAADQERAKEIRSAIEHTT----LKSVTIATEIYYDPEP------------ 1117
Query: 690 AHMYRDKTSVKPSKIID-HFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDE 748
R + ++++ HFE +E+E +I K++ L+ IE R QM +D +
Sbjct: 1118 ----RSTVIEEDEEMVNLHFEIPD-EEIEASIDKQSPWLLR---IELDRTQM-NDKDLTM 1168
Query: 749 GEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNT 808
E E G E + E + + V + D + +E++M +R E
Sbjct: 1169 AEVGEKIKETFGDDLFIIWSEDNAEKLIIRCRVVRDPKSMDEDSEAEEDQMLKRIE---- 1224
Query: 809 SNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNLFE-EKESKH 867
SN+ E + V D+ V YD+K LP + K +
Sbjct: 1225 SNMLEAITLR-------GVPDITR----VVMMKYDRK---------LPDETGKYAKVPEW 1264
Query: 868 LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 927
+L+TDG+N+ + +D +++Y N + + GIEA + +EV NV A G V
Sbjct: 1265 VLETDGVNLAEVMCVPG-VDASRIYTNSFIDILTVLGIEAGRASLYKEVYNVIASDGSYV 1323
Query: 928 DPRHLSLVADYMTHSGTYVAMNRNGIRLNPS-FIQKMTFEMPLEKIRQASMQGREDSLRA 986
+ RH++L+ D MT G +A+ R+GI N + + + +FE +E + +A D R
Sbjct: 1324 NYRHMALLVDVMTSRGHLMAVTRHGINRNDTGALMRCSFEETVEILLEAGAAAELDDCRG 1383
Query: 987 PSARVMLGQECRQGTGLFQL 1006
S V+LGQ GTG F +
Sbjct: 1384 VSENVILGQLAPVGTGAFDV 1403
>gi|154297219|ref|XP_001549037.1| hypothetical protein BC1G_12445 [Botryotinia fuckeliana B05.10]
gi|347440865|emb|CCD33786.1| similar to DNA-directed RNA polymerase ii largest subunit
[Botryotinia fuckeliana]
Length = 1742
Score = 222 bits (566), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 141/416 (33%), Positives = 214/416 (51%), Gaps = 37/416 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + P+ PL G++QD + K+ RD F+T+ MN++ L +
Sbjct: 511 RAEVMNLCMVPLNIVSPQRNGPLMGIVQDTLAGVYKICRRDVFITKEHLMNIL---LWVP 567
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + P I KP P WTGKQ++S +I PK I++ +
Sbjct: 568 DWDGVIPQPAILKPRPRWTGKQIVSLII----PK-------------IVNSYNASKDKEH 610
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
L + D I+ G+L+ G++ KK G++ G+VH V++ G + A++ + ++
Sbjct: 611 LHAPLNDDGCLIQEGQLMYGLMAKKNVGASGNGIVHIVFNEQGPDAAMAFFNGCQRVINY 670
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + +E + K I K + TE A L++ P +
Sbjct: 671 WLLHNGFSIGIGDTIPNKETIEQIEKAIAKQKAEVTELVEKATSNELESLPGM------- 723
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
R + Q L++ N +GL++ NN M SG+KGST+N
Sbjct: 724 ------NVRETFESQVSKALNEARNTAGTKT-EDGLLD---INNAVQMARSGSKGSTINI 773
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S L+GQ +EGKR RTLP F + SP + GFV+ ++ G+ P EFFFH M
Sbjct: 774 SQMSALVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAM 833
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
AGREGLIDTAVKT+ +GY+QR LVK LE + YD TVR+S ++Q +YGEDGLD
Sbjct: 834 AGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLD 889
Score = 92.8 bits (229), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 46/62 (74%), Positives = 51/62 (82%), Gaps = 1/62 (1%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
+L NPGE VGVLAAQSIGEP+TQMTLNTFHF G NVTLG+PRL+EIL +A IKTP
Sbjct: 1074 ALVNPGEMVGVLAAQSIGEPATQMTLNTFHFTGISSKNVTLGVPRLKEILNIAPN-IKTP 1132
Query: 630 SM 631
SM
Sbjct: 1133 SM 1134
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 64/118 (54%), Gaps = 1/118 (0%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D + Y N + +GIEAA ++RE+ V A G V+ RHL+L+ D MT G
Sbjct: 1345 VDPRRTYSNHFIQVFEVFGIEAARSALMRELTMVLAFDGSYVNHRHLALLTDIMTSRGHL 1404
Query: 946 VAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTG 1002
+A+ R+GI R + + + +FE +E + +A+ G D R S VMLGQ GTG
Sbjct: 1405 MAITRHGINRADTGALMRCSFEETVEILLEAAAVGELDDCRGISENVMLGQLAPMGTG 1462
>gi|156054160|ref|XP_001593006.1| hypothetical protein SS1G_05928 [Sclerotinia sclerotiorum 1980]
gi|154703708|gb|EDO03447.1| hypothetical protein SS1G_05928 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1746
Score = 222 bits (566), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 141/416 (33%), Positives = 214/416 (51%), Gaps = 37/416 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + P+ PL G++QD + K+ RD F+T+ MN++ L +
Sbjct: 511 RAEVMNLCMVPLNIVSPQRNGPLMGIVQDTLAGVYKICRRDVFITKEHLMNIL---LWVP 567
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + P I KP P WTGKQ++S +I PK I++ +
Sbjct: 568 DWDGVIPQPAILKPRPRWTGKQIVSLII----PK-------------IVNSYNASKDKEH 610
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
L + D I+ G+L+ G++ KK G++ G+VH V++ G + A++ + ++
Sbjct: 611 LHAPLNDDGCLIQEGQLMYGLMAKKNVGASGNGIVHIVFNEQGPDAAMAFFNGCQRVINY 670
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + +E + K I K + TE A L++ P +
Sbjct: 671 WLLHNGFSIGIGDTIPNKETIEQIEKAIAKQKAEVTELVEKATSNELESLPGM------- 723
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
R + Q L++ N +GL++ NN M SG+KGST+N
Sbjct: 724 ------NVRETFESQVSKALNEARNTAGTKT-EDGLLD---INNAVQMARSGSKGSTINI 773
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S L+GQ +EGKR RTLP F + SP + GFV+ ++ G+ P EFFFH M
Sbjct: 774 SQMSALVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAM 833
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
AGREGLIDTAVKT+ +GY+QR LVK LE + YD TVR+S ++Q +YGEDGLD
Sbjct: 834 AGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLD 889
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 61/88 (69%), Gaps = 3/88 (3%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
+L NPGE VGVLAAQSIGEP+TQMTLNTFHF G NVTLG+PRL+EIL +A IKTP
Sbjct: 1074 ALVNPGEMVGVLAAQSIGEPATQMTLNTFHFTGISSKNVTLGVPRLKEILNIAPN-IKTP 1132
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRIT 657
SM + D P ++ +L +S T
Sbjct: 1133 SMIV--YQDGPNANQETAKLLRSAVEHT 1158
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 64/118 (54%), Gaps = 1/118 (0%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D + Y N + +GIEAA ++RE+ V A G V+ RHL+L+ D MT G
Sbjct: 1345 VDPRRTYSNHFIQVFVVFGIEAARSALMRELTMVLAFDGSYVNHRHLALLTDIMTSRGHL 1404
Query: 946 VAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTG 1002
+A+ R+GI R + + + +FE +E + +A+ G D R S VMLGQ GTG
Sbjct: 1405 MAITRHGINRADTGALMRCSFEETVEILLEAAAVGELDDCRGISENVMLGQLAPMGTG 1462
>gi|397135958|gb|AFO11474.1| RNA polymerase I, partial [Magnusiomyces magnusii]
Length = 869
Score = 222 bits (566), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 143/419 (34%), Positives = 219/419 (52%), Gaps = 41/419 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S + V Q + P+ P+ G++QD + K++ RDTF + MN+++ I
Sbjct: 311 RAELSXICMVPLQIITPQSNKPVMGIVQDTLCGVRKMTKRDTFCDFDQVMNILF---WIP 367
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N PTI KP PLWTGKQ+LS I D + +R LDK G
Sbjct: 368 NWNGIVPEPTIIKPKPLWTGKQMLSMCI-----PDGIHLRR-------LDKSPISPDDDG 415
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
++ + GE++ G+++KK G++ GL+ ++ GA + K+
Sbjct: 416 ML---------VVKGEIMYGVVNKKTIGASAGGLIDIIFKEKGAYICRDXFGNIQKVVNF 466
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + + + T+ I +AR ++ +A ++L+
Sbjct: 467 WLLHNGFSIGIGDTIADADTMKTITETIEEARXQVSQIISDAE-----------RNKLER 515
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
A R ++ L++ +N + + L E NN++ MV SG+KGS +N
Sbjct: 516 AQGMT--LRETFEQNVSRTLNQARDNAGKYA-EKSLKE---XNNVKQMVISGSKGSFINI 569
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EG R + RTLP F + SP + GFV+ ++ G+ PQEFFFH M
Sbjct: 570 SQMSACVGQQIVEGXRIPFGFADRTLPHFAKDDYSPESKGFVENSYLRGLSPQEFFFHAM 629
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTK 431
AGREGLIDTAVKT+ +GY+QR LVK LE + VHYD TVR+S ++Q +YGEDGLD K
Sbjct: 630 AGREGLIDTAVKTAXTGYIQRRLVKALEDVMVHYDGTVRNSLGDILQFVYGEDGLDPCK 688
>gi|50289967|ref|XP_447415.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526725|emb|CAG60352.1| unnamed protein product [Candida glabrata]
Length = 1715
Score = 222 bits (566), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 144/420 (34%), Positives = 220/420 (52%), Gaps = 45/420 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S L V Q + P+ P G++QD + KL+LRDTFL + +N++Y +
Sbjct: 498 RAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFLEFDQVLNMLY---WVP 554
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + P I KP PLW+GKQ+LS I PK + R E G+T
Sbjct: 555 DWDGVIPTPAIIKPKPLWSGKQILSVAI----PKGIHLQRFDE-----------GTT--- 596
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ + D + + GE++ G++DKK GS+ GL+H V G L + K+
Sbjct: 597 -LLSPKDNGMLVIDGEIIFGVVDKKTVGSSSGGLIHVVTREKGPTICARLFGNIQKVVNF 655
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF+ G+ D + + R+ ++ I +A+ + + + +E
Sbjct: 656 WLLHNGFSTGIGDTVADGQTMREISETIAEAK-------------------QKVEAVTKE 696
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPF---PANNLQFMVESGAKGST 309
A A++ + + + +S D V +N+ G + NN++ MV +G+KGS
Sbjct: 697 AQANLLTAKHGMTLR-ESFEDNVVRFLNEARDRAGRLAEMNLKDLNNVKQMVSAGSKGSF 755
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+S +GQ +EGKR RTLP F + SP + GFV+ ++ G+ PQEFFF
Sbjct: 756 INIAQMSACVGQQSVEGKRIGFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFF 815
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H M GREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S ++IQ +YGEDG+D
Sbjct: 816 HAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGNVIQFIYGEDGMDA 875
Score = 143 bits (361), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 131/449 (29%), Positives = 216/449 (48%), Gaps = 69/449 (15%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
L S+ +PGE VGVLAAQSIGEP+TQMTLNTFHFAG VT G+PRL+EIL +A K +K
Sbjct: 1054 LRSIVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVA-KNMK 1112
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNY------ 681
TPS+ + P+ ++KA + ++ T L+ V + + P+P
Sbjct: 1113 TPSLTVYLEPEYSADQEKAKLVRSAIEHTT----LKSVTVASEIYYDPDPRSTVIPEDDE 1168
Query: 682 --QMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQ 739
Q+ F + D+T K++D + +L LE+ RAA K++ + Q ++
Sbjct: 1169 IIQLHFSLL-----DDET----EKLLDQ-QSPWLLRLEL---DRAAMNDKDLTMGQVGER 1215
Query: 740 MEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERM 799
++D ++D + V E+ E+ ++ +V + + D E +E+ M
Sbjct: 1216 IKDTFKND--------------LFVIWSEDNAEKLIIRC--RVVRPKALDAETEAEEDHM 1259
Query: 800 SEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNL 859
+ KIE N+ ++ + +V YD+K +P+
Sbjct: 1260 LK--------------KIENTMLENITLRGIEGIERVVM-MKYDRK---------VPNET 1295
Query: 860 FE-EKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKN 918
E +K + +L+TDG+N++ + +D ++Y N + GIEA + +EV N
Sbjct: 1296 GEYQKVPEWVLETDGVNLSEVMTVPG-VDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYN 1354
Query: 919 VFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASM 977
V A G V+ RH++L+ D MT G ++ R+G R + + + +FE +E + +A
Sbjct: 1355 VIASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSSTGALMRCSFEETVEILFEAGA 1414
Query: 978 QGREDSLRAPSARVMLGQECRQGTGLFQL 1006
D R S V+LGQ GTG F +
Sbjct: 1415 SAELDDCRGVSENVILGQMAPIGTGAFDV 1443
>gi|83320458|gb|ABC02856.1| RNA polymerase II largest subunit, partial [Endogone pisiformis]
Length = 845
Score = 222 bits (566), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 149/425 (35%), Positives = 217/425 (51%), Gaps = 36/425 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE + + V Q + P+ P+ G++QD + K + RD FLT+ MN+V L +
Sbjct: 263 RAEITEICRVPKQIVSPQSNXPVMGIVQDTLCGIRKFTKRDCFLTKEMVMNIV---LYVP 319
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + I KP P+WTGKQ++S VI D H E + +
Sbjct: 320 AWDGQIPAXAILKPKPMWTGKQIVSMVIPEXINCDTFHSSHPEAENTWM----------- 368
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ DT V I G+L+ GI+ KK G+ GL+H + + G A LS +
Sbjct: 369 ---SPGDTRVHIEDGDLICGIVCKKTVGTADGGLIHTIVNELGHTAARDFLSGTQTVVNF 425
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + +E T II+ A+ ++ A L+ +P + + E
Sbjct: 426 WLLNHGFSIGIGDTIADKETMNSITNIISTAKSRVSDIILAAQQDKLECEPGMTIRESFE 485
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
A + +A+ D K+ Q L E NN++ MV SG+KGS +N
Sbjct: 486 AKVNQALNKARDDAGKKA----------QASLRED-------NNVKQMVVSGSKGSFINI 528
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EGKR RTLP F + SP + GFV+ ++ G+ PQEFFFH M
Sbjct: 529 SQMSACVGQQNVEGKRIPYGFKFRTLPHFTKDDHSPESRGFVENSYLRGLTPQEFFFHAM 588
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV--T 430
GREGLIDTAVKT+ +GY+QR LVK LE + V YD TVR+S +IQ YGEDG+D
Sbjct: 589 GGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDVIQFCYGEDGMDACFV 648
Query: 431 KRQYL 435
+RQ L
Sbjct: 649 ERQKL 653
>gi|242778248|ref|XP_002479200.1| DNA-dependent RNA polymerase II largest subunit, putative
[Talaromyces stipitatus ATCC 10500]
gi|218722819|gb|EED22237.1| DNA-dependent RNA polymerase II largest subunit, putative
[Talaromyces stipitatus ATCC 10500]
Length = 1755
Score = 222 bits (565), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 145/419 (34%), Positives = 213/419 (50%), Gaps = 40/419 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + P+ PL G++QD + K+ RD FLT+ + MNL+ L +
Sbjct: 514 RAELQELALVPLNIVSPQRNGPLMGIVQDSLCGIYKICRRDVFLTKDQVMNLM---LWVP 570
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVI---INLTPKDKVIIRHGELLSGILDKKQFGST 129
+ + P I KP P WTGKQ++S V+ +NL DK E S + D
Sbjct: 571 DWDGVIPQPAILKPRPRWTGKQIISMVLPSGLNLLRIDKDKAPLSEKFSPLADGGL---- 626
Query: 130 QYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKL 189
LVH G+L+ G+ KK G++ G+VH +++ +G + A++ ++
Sbjct: 627 ---LVHG----------GQLMYGMFSKKTVGASGGGIVHTIFNEYGPDAAVTFFDGAQRV 673
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
+L GF++G+ D + D+K + I A R G +I+ S
Sbjct: 674 VNYWLLHNGFSIGIGDTIP----DKKTIERIEAAVRAGKAEV-----------EQIVQSA 718
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
+ +P I ++S + + NN + E NN M SG+KGST
Sbjct: 719 TENTLEPLPGM--NIRETFESKVSRALNNAREEAGSETEKSLKDLNNAVQMARSGSKGST 776
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q++ ++GQ +EGKR RTLP F + SP + GFV+ ++ G+ P EF+F
Sbjct: 777 INISQMTAIVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFYF 836
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
H M GREGLIDTAVKT+ +GY+QR LVK LE L V YD TVR+S +IQ LYGEDGLD
Sbjct: 837 HAMGGREGLIDTAVKTAETGYIQRKLVKALEELMVKYDGTVRNSLGDIIQFLYGEDGLD 895
Score = 102 bits (255), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 79/125 (63%), Gaps = 4/125 (3%)
Query: 543 VVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAG 602
V +Y+ + +HV +M F + + ANPGE VGVLAAQSIGEP+TQMTLNTFHFAG
Sbjct: 1053 VTQYSMNKLAFNHVLGAIEMRFAR---AQANPGEMVGVLAAQSIGEPATQMTLNTFHFAG 1109
Query: 603 RGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVL 662
NVTLG+PRL+EIL +AT IKTPSM + P ++ A +L + ++ V
Sbjct: 1110 VSSKNVTLGVPRLKEILNVATN-IKTPSMTVYQEPHRKHDKESAKQLRSVVEHTSLRSVT 1168
Query: 663 EKVKI 667
E +I
Sbjct: 1169 EATEI 1173
Score = 69.7 bits (169), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 1/122 (0%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D ++ Y N + +GIEAA ++RE+ V A G V+ RHL+L+ D MT G
Sbjct: 1349 VDTSRTYSNQFIEVFEVFGIEAARTAVLRELTQVLAFDGSYVNHRHLALLVDVMTVRGYL 1408
Query: 946 VAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
+ R+GI R + + + +FE +E + +A+ G D R S ++LGQ GTG F
Sbjct: 1409 TPVTRHGINRADNGALMRCSFEETVEILLEAAAFGELDDCRGVSENLILGQLAPAGTGEF 1468
Query: 1005 QL 1006
+
Sbjct: 1469 DV 1470
>gi|31127046|gb|AAC03136.3| RNA polymerase II largest subunit [Limulus polyphemus]
Length = 778
Score = 222 bits (565), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 150/418 (35%), Positives = 219/418 (52%), Gaps = 30/418 (7%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L VS + P+ P+ G++QD + + K++ RD FL + + MNL+ L I
Sbjct: 42 RAEIEQLAMVSRNIITPQSNKPVMGIVQDTLTAVRKMTRRDVFLEKDQMMNLLMY-LPIW 100
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ ++ P I KP PLWTGKQ+ S +I P +I H S D++ G ++
Sbjct: 101 DGKMPM--PAILKPKPLWTGKQLFSLII---PPNINLIRTH----STHPDEEDDGPYKW- 150
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ DT V I HGEL+SGI+ KK G++ L+H V++ G E + + +
Sbjct: 151 --ISPGDTKVLIEHGELISGIVCKKTVGASSGSLMHVVFNELGHEVSGQFYGHIQTVVNN 208
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L G T+G+ D + + + I KA++ E A L+ P + L++
Sbjct: 209 WLLLEGHTIGIGDTIADPQTYIEIQNTIKKAKQDVIEVIEKAHNDELEPTP---GNTLRQ 265
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
F Q++R DK T Q L E NN + MV SGAKGS +N
Sbjct: 266 T------FENQVNRILNDARDK-TGASAQKSLSE-------FNNFKAMVVSGAKGSKINI 311
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+ +GQ +EGKR RTLP F+ + P + GFV+ ++ G+ P EFFFH M
Sbjct: 312 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 371
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVT 430
GREGLIDTAVKT+ +GY+QR L+K +E + YD TVR+S +IQ+ YGEDGLD T
Sbjct: 372 GGREGLIDTAVKTAETGYIQRRLIKAMESVMATYDGTVRNSTGQVIQLKYGEDGLDGT 429
>gi|397135971|gb|AFO11480.1| RNA polymerase I, partial [Botryozyma nematodophila]
Length = 872
Score = 222 bits (565), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 142/419 (33%), Positives = 217/419 (51%), Gaps = 45/419 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S L VS Q + P+ P+ G++QD + KL+ RDTF+T E M+++ + +
Sbjct: 311 RAELSQLCMVSLQIVSPQSNKPVMGIVQDSLCGIRKLTKRDTFITFEEMMDIL---MWVP 367
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + P I +P PLWTGKQV+S I PK I R+ E + T G
Sbjct: 368 DWNGIVVQPAIIRPKPLWTGKQVISMCI----PKGINIQRYEE------GTGKLSPTDNG 417
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
++ + +GE++ G++DKK G + L+H + G + + + ++
Sbjct: 418 ML---------VDNGEIIYGVVDKKTVGGKEGDLIHTIMREKGNVVCCNFFTGIQQVVNF 468
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + T+ I++A+ + +A L +P + +
Sbjct: 469 WLLHNGFSIGIGDTIADAATMTDITRTIDEAKEKVQQIITDAEANKLPAEPGMTVRE--- 525
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQ---VCLPEGLIEPFPANNLQFMVESGAKGST 309
S KV+ +NQ V I +NN++ MV +G+KGS
Sbjct: 526 -----------------SFEHKVSQTLNQARDVAGRSAEISLKDSNNVKQMVIAGSKGSF 568
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+S +GQ +EGKR RTLP F + SP + GF++ ++ G+ PQEFFF
Sbjct: 569 INISQMSACVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPESRGFIENSYLRGLTPQEFFF 628
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
H MAGREGLIDTAVKT+ +GY+QR LVK LE + V YD TVR+S +IQ +YGEDGLD
Sbjct: 629 HAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMVQYDTTVRNSLGDIIQFIYGEDGLD 687
>gi|113707384|gb|ABI36591.1| RNA polymerase II largest subunit [Gyalideopsis vulgaris]
Length = 1015
Score = 222 bits (565), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 143/418 (34%), Positives = 214/418 (51%), Gaps = 44/418 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE + L V + P+ PL G++QD + K+ RD FLT+ MN++ L +
Sbjct: 432 RAEVNQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFLTKERVMNIL---LWVP 488
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + P I+KP PLWTGKQ+L VI P ++R E G
Sbjct: 489 DWDGVIPQPAIFKPKPLWTGKQILGLVI----PPGLNLLRGSE--EGFF----------- 531
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ D + I GEL+ G+L+KK G++ G++H +++ G E A++ + +
Sbjct: 532 ---PLNDDGLLIAGGELMYGLLNKKSVGASGGGVIHIIFNEKGPEVAMNFFNGAQTVVNY 588
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + + R+ +NK + D EI S +
Sbjct: 589 WLLHNGFSIGIGDTIPDRNTIRQIEGAVNKQK---------------DEVEEITKSATEN 633
Query: 253 AYASIP--QFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTV 310
S+P R + + L+K ++ V E L + NN M SG+KGST+
Sbjct: 634 QLESLPGMNVRETFESKVSKALNKARDDAGSVT-EENLKD---LNNAIQMARSGSKGSTI 689
Query: 311 NTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFH 370
N Q + ++GQ +EGKR RTLP F + SP + GFV+ ++ G+ P EFFFH
Sbjct: 690 NISQTTAVVGQQSVEGKRTPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFH 749
Query: 371 CMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
MAGREGLIDTAVKT+ +GY+QR LVK LE + YD TVR+S ++Q +YGEDGLD
Sbjct: 750 AMAGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFIYGEDGLD 807
Score = 45.4 bits (106), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/27 (77%), Positives = 23/27 (85%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMT 594
L + NPGE VGVLAAQSIGEP+TQMT
Sbjct: 989 LKAAVNPGEMVGVLAAQSIGEPATQMT 1015
>gi|397135828|gb|AFO11409.1| RNA polymerase I, partial [Nakaseomyces delphensis]
Length = 871
Score = 222 bits (565), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 145/422 (34%), Positives = 218/422 (51%), Gaps = 47/422 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S L V Q + P+ P G++QD + KL+LRD+FL E +N++Y +
Sbjct: 311 RAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDSFLEFDEVLNMLY---WVP 367
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGI-LDKKQFGSTQY 131
+ + P + KP PLWTGKQ+LS I N GI L + G+T
Sbjct: 368 DWDGVIPIPAVLKPKPLWTGKQILSVAIPN----------------GIHLQRFDEGTT-- 409
Query: 132 GLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFT 191
+ + D + I GE++ G +DKK GS+ GL+H V G L + K+
Sbjct: 410 --LLSPKDNGMLIIDGEIIFGTVDKKTVGSSSGGLIHVVTREKGPTVCARLFGNIQKVVN 467
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQ 251
+L GF+ G+ D + + R+ ++ I A++ + + +
Sbjct: 468 FWLLHNGFSTGIGDTVADGQTMREISETIADAKKK-------------------VEAVTK 508
Query: 252 EAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPF---PANNLQFMVESGAKGS 308
EA A++ + + + +S D V +N+ G + NN++ MV +G+KGS
Sbjct: 509 EAQANLLTAKHGMTLR-ESFEDNVVRYLNEARDKAGRLAEMNLKDLNNVKQMVSAGSKGS 567
Query: 309 TVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFF 368
+N Q+S +GQ +EGKR RTLP F + SP + GFV+ ++ G+ PQEFF
Sbjct: 568 FINIAQMSACVGQQSVEGKRIGFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFF 627
Query: 369 FHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
FH M GREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S ++IQ +YGEDG+D
Sbjct: 628 FHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGNVIQFIYGEDGMD 687
Query: 429 VT 430
Sbjct: 688 AA 689
>gi|367011663|ref|XP_003680332.1| hypothetical protein TDEL_0C02320 [Torulaspora delbrueckii]
gi|359747991|emb|CCE91121.1| hypothetical protein TDEL_0C02320 [Torulaspora delbrueckii]
Length = 1727
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 146/422 (34%), Positives = 216/422 (51%), Gaps = 47/422 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S L V Q + P+ P G++QD + KL+LRD F+ + +N++Y +
Sbjct: 498 RAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDNFIELDQVLNMLY---WVP 554
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + P I KP PLWTGKQ+LS I PK + R E G+T
Sbjct: 555 DWDGVIPTPAIIKPKPLWTGKQILSIAI----PKGIHLQRFDE-----------GTT--- 596
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ + D + I G+++ G++DKK GS+ GL+H V G + L + K+
Sbjct: 597 -LLSPKDNGMLIIDGKIIFGVVDKKTVGSSSGGLIHVVTREKGPQICARLFGNIQKVVNY 655
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARR----LGTEAACNALGLPLDTDPEIISS 248
+ GF+ G+ D + + R+ T+ I A++ + EA N L
Sbjct: 656 WFLHNGFSTGIGDTIADGQTMREITETIADAKKKVEDVTKEAQANLL------------- 702
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGS 308
+ F + R DK + +V L + NN++ MV +G+KGS
Sbjct: 703 TAKHGMTLRESFEDNVVRFLNEARDK-AGRLAEVNLKD-------LNNVKQMVSAGSKGS 754
Query: 309 TVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFF 368
+N Q+S +GQ +EGKR A RTLP F + SP + GFV+ ++ G+ PQEFF
Sbjct: 755 FINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFF 814
Query: 369 FHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
FH M GREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S ++IQ +YGEDG+D
Sbjct: 815 FHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDSTTRNSLGNVIQFVYGEDGMD 874
Query: 429 VT 430
+
Sbjct: 875 AS 876
Score = 112 bits (279), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 121/449 (26%), Positives = 196/449 (43%), Gaps = 92/449 (20%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
L S+ +PGE VGVLAAQSIGEP+TQMTLNTFHFAG VT G+
Sbjct: 1054 LRSIVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGV--------------- 1098
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNY------ 681
P + +KA + ++ T L+ V + + P+P
Sbjct: 1099 ---------PRLXXXXEKAKFIRSAIEHTT----LKSVTVASEIYYDPDPRSTVIAEDEE 1145
Query: 682 --QMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQ 739
Q+ F + D+T K +D + +L LE+ RAA K++ + Q ++
Sbjct: 1146 IIQLHFSLLD-----DETE----KSLDQ-QSPWLLRLEL---DRAAMNDKDLTMGQVGEK 1192
Query: 740 MEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERM 799
+++ ++D + V E+ E+ ++ +V + + D E +E+ M
Sbjct: 1193 IKETFKND--------------LFVIWSEDNAEKLIIRC--RVVRPKSMDIETEAEEDHM 1236
Query: 800 SEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNL 859
+ KIE N+ ++ V N +V YD+K +PS
Sbjct: 1237 LK--------------KIENTMLENITLRGVENIERVV-MMKYDRK---------VPSAT 1272
Query: 860 FE-EKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKN 918
E K + +L+TDG+N++ + + D ++Y N + GIEA + +EV N
Sbjct: 1273 GEYHKVPEWVLETDGVNLSEVMTVPGV-DSKRIYTNSFIDIMEVLGIEAGRAALYKEVYN 1331
Query: 919 VFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASM 977
V A G V+ RH++L+ D MT G ++ R+G R + + +FE +E + +A
Sbjct: 1332 VIASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSATGALMRCSFEETVEILFEAGA 1391
Query: 978 QGREDSLRAPSARVMLGQECRQGTGLFQL 1006
D R S V+LGQ GTG F +
Sbjct: 1392 CAEMDDCRGVSENVILGQMAPIGTGSFDV 1420
>gi|159117294|ref|XP_001708867.1| RNA polymerase AI large subunit [Giardia lamblia ATCC 50803]
gi|157436981|gb|EDO81193.1| RNA polymerase AI large subunit [Giardia lamblia ATCC 50803]
Length = 2142
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 151/433 (34%), Positives = 214/433 (49%), Gaps = 76/433 (17%)
Query: 81 PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYGLVHAVWDT 140
P I P+ WTGK V+S+++ ++ + + I G + F T+ LV
Sbjct: 950 PAIVYPVARWTGKAVISSMLHKVSCQREPINYTGSIKIPTDIWGPFRETEARLV------ 1003
Query: 141 HVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFT 200
I + LL+GI+DK+ + +GL HAV++ +G LS +L T LQR GFT
Sbjct: 1004 ---IINNTLLTGIVDKQHIATVPHGLAHAVFELYGHNRCGWFLSNFGRLATYVLQRHGFT 1060
Query: 201 LGVRDILVRQERDRKRTKIINKARRLGT----EAAC------------------------ 232
V D+++R ++ R K+ + G E C
Sbjct: 1061 CSVEDMVLRDTAEKARYKLCDDVLASGAIRTAEFLCEYLTLTGLLGNLEASDASFLMKFA 1120
Query: 233 --NALGLPL--DTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGL 288
++GL + D I S L+++ + A++D + + +T N+ ++C P L
Sbjct: 1121 EKGSVGLKALSEKDRLRIYSILRDSLSLDTTIEARLDNHISNEANLITTNLMKICSPSNL 1180
Query: 289 -------------------IEPFPA-------------NNLQFMVESGAKGSTVNTMQIS 316
+ P A N L +MV SGAKGSTVN ++
Sbjct: 1181 TLKMRSSISGNNPYGTPRIVTPSRAYLCSRNMASQKSINCLAYMVLSGAKGSTVNLQMMT 1240
Query: 317 CLLGQIELEGKRPAMMVSGRTLPSFLPYE-VSPRAGGFVDGRFMTGIQPQEFFFHCMAGR 375
LGQ LEG+R +G+TLPS +PYE GG+V RF+TGI+P FFFHC AGR
Sbjct: 1241 TCLGQQNLEGRRVPSTQTGKTLPSHIPYEHCELVQGGYVIDRFLTGIRPSSFFFHCQAGR 1300
Query: 376 EGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYL 435
EGLIDTA+KT+ SGY QR LVK+LEGL V YD TVR SD L+Q+LYG DG+D TK YL
Sbjct: 1301 EGLIDTAIKTASSGYFQRVLVKNLEGLVVAYDGTVRRSDNMLVQLLYGGDGVDTTKTSYL 1360
Query: 436 TDKQFSFLEDNIK 448
++F F+ N K
Sbjct: 1361 --QEFEFMYQNQK 1371
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 81/148 (54%), Gaps = 1/148 (0%)
Query: 860 FEEKESKHLLKTDGINVNFISQYRH-LLDLNKLYVNDIHYMASTYGIEAANRVIIREVKN 918
+E ++++ +G N+ + + ++ + +Y N+I + YGIEAA II E+
Sbjct: 1991 YELPADRYVMDIEGGNLRALFYLSNPFINFDNIYTNNISQIFEIYGIEAARNAIIEEIHR 2050
Query: 919 VFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQ 978
VF+ Y IEVD RHLSL+AD MT SG +NR +R + K +FE + ++
Sbjct: 2051 VFSTYHIEVDERHLSLIADSMTLSGCVRGLNRLEMRHQTEELLKASFESACTSLAAGALT 2110
Query: 979 GREDSLRAPSARVMLGQECRQGTGLFQL 1006
DSLRAP+ V +GQ QGTG F L
Sbjct: 2111 SGFDSLRAPAGAVTVGQYPSQGTGSFDL 2138
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 85/162 (52%), Gaps = 16/162 (9%)
Query: 484 IFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSV 543
I+ P +K D L + D A + F+ P +I P + GS S + + ++
Sbjct: 1517 IYLPETSKHNKDTLFDHMTIQDLA--EMYTAFQEIPIHMI--LSPYLYLGSTSPSFSKAL 1572
Query: 544 VKY---------TKGRTDASHVDKFYDMIFYKNLL-SLANPGENVGVLAAQSIGEPSTQM 593
+Y T+ S ++ ++ Y + SL PG VGV+AAQS GEPSTQ+
Sbjct: 1573 NEYISQKQSEKQTQAMGGLSFDSAYFKLLAYTKFIRSLVAPGSAVGVIAAQSTGEPSTQL 1632
Query: 594 TLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPF 635
TLNTFH AG G +N T+G+PRLREI+M T+ +P + + F
Sbjct: 1633 TLNTFHLAGHGGVNATMGVPRLREIIM--TRNTSSPIITMSF 1672
>gi|403215001|emb|CCK69501.1| hypothetical protein KNAG_0C03970 [Kazachstania naganishii CBS
8797]
Length = 1721
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 145/422 (34%), Positives = 217/422 (51%), Gaps = 47/422 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S L V Q + P+ P G++QD + L+LRDTFL +N++Y +
Sbjct: 497 RAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRILTLRDTFLELDHVLNMLY---WVP 553
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGI-LDKKQFGSTQY 131
+ + P I KP PLWTGKQ+LS I N GI L + G+T
Sbjct: 554 DWDGVIPTPAILKPKPLWTGKQILSVAIPN----------------GIHLQRFDEGTT-- 595
Query: 132 GLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFT 191
+ + D + I G+++ G++DKK GS+ GL+H V G + L + K+
Sbjct: 596 --LLSPKDNGMLIIDGQIIFGVVDKKTVGSSSGGLIHVVTREKGPQTCARLFGNIQKVVN 653
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQ 251
+L GF+ G+ D + ++ T+ I +A++ E +
Sbjct: 654 FWLLHNGFSTGIGDTIADGATIKEITETIAEAKKKVEEVT-------------------K 694
Query: 252 EAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQF---MVESGAKGS 308
EA A++ + + + +S D V +N+ G + N+ F MV +G+KGS
Sbjct: 695 EAQANLLTAKHGMTLR-ESFEDNVVRFLNEARDKAGRLAEVNLNDTNFVKQMVSAGSKGS 753
Query: 309 TVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFF 368
+N Q+S +GQ +EGKR RTLP F + SP + GFV+ ++ G+ PQEFF
Sbjct: 754 FINIAQMSACVGQQSVEGKRIGFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFF 813
Query: 369 FHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
FH M GREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S ++IQ +YGEDG+D
Sbjct: 814 FHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGID 873
Query: 429 VT 430
+
Sbjct: 874 AS 875
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 131/449 (29%), Positives = 210/449 (46%), Gaps = 69/449 (15%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
L S+ +PGE VGVLAAQSIGEP+TQMTLNTFHFAG VT G+PRL+EIL +A K +K
Sbjct: 1053 LRSVVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVA-KNMK 1111
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNY------ 681
TPS+ + D ++KA + ++ T L+ V + + P+P
Sbjct: 1112 TPSLTVYLKDDYSSDQEKAKLIRSAIEHTT----LKSVTVASEIYYDPDPRSTVIEEDEE 1167
Query: 682 --QMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQ 739
Q+ F + M P +L LE+ RAA K++ + Q ++
Sbjct: 1168 IIQLHFSLLDDEMESSLDQQSP----------WLLRLEL---DRAAMNDKDLTMGQVGER 1214
Query: 740 MEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERM 799
+++ ++D + V E+ E+ ++ +V + + D E +E+ M
Sbjct: 1215 IKETFKND--------------LFVIWSEDNAEKLIIRC--RVVRPKSLDAETEAEEDHM 1258
Query: 800 SEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNL 859
+ KIE N+ ++ V N +V YD+K +P+
Sbjct: 1259 LK--------------KIENTMLENITLRGVENIERVVM-MKYDRK---------VPNES 1294
Query: 860 FE-EKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKN 918
E +K + +L++DG+N+ + Q +D ++Y N + GIEA + +EV N
Sbjct: 1295 GEYQKVPEWVLESDGVNLAEVMQVPG-VDATRIYTNSFIDIMEVLGIEAGRAALYKEVYN 1353
Query: 919 VFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASM 977
V A G V+ RH++L+ D MT G ++ R+G R N + + +FE +E + +A
Sbjct: 1354 VIASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGA 1413
Query: 978 QGREDSLRAPSARVMLGQECRQGTGLFQL 1006
D R S V+LGQ GTG F +
Sbjct: 1414 AAELDDCRGVSENVLLGQMAPIGTGAFDV 1442
>gi|322694724|gb|EFY86546.1| DNA-directed RNA polymerase II largest subunit [Metarhizium acridum
CQMa 102]
Length = 1746
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 148/424 (34%), Positives = 216/424 (50%), Gaps = 54/424 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + + P+ PL G++QD + KL RDTF+ + MN++ L +
Sbjct: 510 RAEVKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDKEMVMNMM---LWVP 566
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N + P I KP P WTGKQ++S VI ++ + E S I K
Sbjct: 567 NWDGVIPQPAILKPRPRWTGKQLISMVI-----PQEISLHAPEGDSDIPPK--------- 612
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
DT + I+ GELL G+L KK G+ G++H ++ G E A++ L+ + ++ T
Sbjct: 613 ------DTGLLIQSGELLYGLLKKKNVGAAAGGIIHLCYNELGPEGAMAFLNGVQQVVTY 666
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKAR----RLGTEAACNALGLPLDTDPEIISS 248
+L G ++G+ D + ++ K I+ + +L +A N L
Sbjct: 667 WLLNTGHSIGIGDTIPDKQTIEKIQVHIDTQKAEVAKLTAQATANEL------------- 713
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKV---TNNINQVCLPEGLIEPFPANNLQFMVESGA 305
EA + RA + + L+ Q L + +NN M ESG+
Sbjct: 714 ---EALPGM-NVRATFENKVSMALNSARDQAGTTTQKSLKD-------SNNAVTMSESGS 762
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS++N Q++ L+GQ +EGKR RTLP F + SP A GFV+ ++ G+ P
Sbjct: 763 KGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPS 822
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EFFFH MAGREGLIDTAVKT+ +GY+QR LVK LE L+ YD TVR+S ++Q LYGED
Sbjct: 823 EFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDIVQFLYGED 882
Query: 426 GLDV 429
GLD
Sbjct: 883 GLDA 886
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/64 (73%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
S +PGE VGVLAAQSIGEP+TQMTLNTFHFAG NVTLG+PRL+EIL +A K IKTP
Sbjct: 1068 SFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLA-KDIKTP 1126
Query: 630 SMEI 633
SM +
Sbjct: 1127 SMAV 1130
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 71/122 (58%), Gaps = 1/122 (0%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D ++ Y ND+ + +GIEAA +++E+ NV A G V+ RH++L+ D MT+ G+
Sbjct: 1341 VDASRTYTNDLWQIVEVFGIEAARSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGSI 1400
Query: 946 VAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
A+ R+GI R + + + +FE +E + +A+ G D R S VMLGQ GTG F
Sbjct: 1401 SAVTRHGINRADTGALMRCSFEETVEILLEAAATGELDDCRGISENVMLGQLAPMGTGNF 1460
Query: 1005 QL 1006
+
Sbjct: 1461 DV 1462
>gi|324120586|dbj|BAJ78684.1| RNA polymerase II largest subunit [Papilio polytes]
Length = 1518
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 145/416 (34%), Positives = 213/416 (51%), Gaps = 32/416 (7%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE + Q + P+ P+ G++QD + + K++ RD FLT+ + MNL L L
Sbjct: 497 RAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLTKEQVMNL----LMFL 552
Query: 73 NTEIRTLP-PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQY 131
T +P P I KP PLWTGKQ+ + +I P + +IR D +
Sbjct: 553 PTWDGKIPQPCILKPQPLWTGKQIFTLII----PGNVNMIRTHSTHPDEEDDGPYKWISP 608
Query: 132 GLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFT 191
G DT V + HGELL GIL KK G++ L+H G E A + +
Sbjct: 609 G------DTKVVVEHGELLMGILCKKSLGASAGSLLHICMLELGHETAGRFYGNIQTVIN 662
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQ 251
+L G ++G+ D + + ++ + I KA+ E A + L+ P + L+
Sbjct: 663 NWLLLEGHSIGIGDTIADPQTYQEIQRAIVKAKDDVIEVIQKAHNMELEPTP---GNTLR 719
Query: 252 EAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVN 311
+ F Q++R DK + + L E NNL+ MV +G+KGS +N
Sbjct: 720 QT------FENQVNRILNDARDKTGGSAKK-----SLTE---YNNLKAMVVAGSKGSNIN 765
Query: 312 TMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHC 371
Q+ +GQ +EGKR RTLP F+ + P + GFV+ ++ G+ P EF+FH
Sbjct: 766 ISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHA 825
Query: 372 MAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL 427
M GREGLIDTAVKT+ +GY+QR L+K +E + VHYD TVR+S LIQ+ YGEDGL
Sbjct: 826 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGL 881
Score = 139 bits (349), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 125/441 (28%), Positives = 203/441 (46%), Gaps = 53/441 (12%)
Query: 572 ANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSM 631
NPGE VG LAAQS+GEP+TQMTLNTFHFAG NVTLG+PRL+EI+ ++ K K PS+
Sbjct: 1066 VNPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKP-KAPSL 1124
Query: 632 EIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPH---MNYQMKFCFI 688
+ + +KA + + T L KV + P+P + +F
Sbjct: 1125 TVFLTGGAARDAEKAKNVLCRLEHTT----LRKVTANTAIYYDPDPQNTVIAEDQEF--- 1177
Query: 689 PAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDE 748
++Y + P+KI R IE R +M D E
Sbjct: 1178 -VNVYYEMPDFDPTKISPWLLR----------------------IELDRKRMTDKKLTME 1214
Query: 749 GEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNT 808
+ AE A G D++ D + + ++ E++ F++ DEE + + E+D
Sbjct: 1215 -QIAEKINAGFGD-DLNCIFNDDNAEKLVLRIRIMNNEESKFQD-NDEETVDKMEDD--- 1268
Query: 809 SNIGERFKIEFRDSTNVFVKDVVNQ--HNIVHKYSYDKKNHMWCKLLFLPSNLFEEKESK 866
+ R + D+ Q I Y + + +++ F+ ++
Sbjct: 1269 --------MFLRCIEANMLSDMTLQGIEAIAKVYMHLPQTEAKKRIIITEQGEFKAI-AE 1319
Query: 867 HLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIE 926
LL+TDG ++ + R +D + + NDI + GIEA + + +E+ V YG+
Sbjct: 1320 WLLETDGTSLMKVLSERD-VDPIRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLY 1378
Query: 927 VDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLR 985
V+ RHL+L+ D MT G +A+ R+GI R + + + +FE ++ + A+ D +R
Sbjct: 1379 VNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHAEVDPMR 1438
Query: 986 APSARVMLGQECRQGTGLFQL 1006
S +++GQ R GTG F L
Sbjct: 1439 GVSENIIMGQLPRMGTGCFDL 1459
>gi|116874718|emb|CAJ75797.1| RNA polymerase I subunit B [Geosiphon pyriformis]
Length = 649
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 144/415 (34%), Positives = 219/415 (52%), Gaps = 34/415 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE + + V Q + P+ P+ G++QD + + K + RD FL+R MN++ + +
Sbjct: 269 RAEITEICMVPKQIVSPQSNKPVMGIVQDTLCAVRKFTKRDCFLSRDLVMNIL---MWVP 325
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ R P I KP+P+WTGKQ+LS +I PK I SG + ++ +
Sbjct: 326 EWDGRIPRPCIIKPIPMWTGKQILSLII----PKG---INCDGFHSGHPENEKSDISP-- 376
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
DT V I G++L GI+ KK G++Q GLVH + G+E A L+ +
Sbjct: 377 -----GDTKVLIEDGQVLCGIICKKTVGTSQQGLVHVIMQELGSEAAKKFLNGCQTVVNN 431
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L + GF++G+ D + ++ T+ I A+ E A L +P + ++E
Sbjct: 432 WLLQHGFSIGIGDTIADKDTMETITQTIGAAKSRVQEIILKAQQDNLKCEPGMT---IRE 488
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
+ F ++R+ + D + + E NN++ MV SG+KGS +N
Sbjct: 489 S------FEHHVNRELNTARDSAGRSAERSLREE--------NNVKQMVVSGSKGSFINI 534
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EGKR RTLP F + SP + GFV+ ++ G+ P EFFFH M
Sbjct: 535 SQMSACVGQQNVEGKRIPFGFKFRTLPHFTKDDHSPESRGFVENSYLRGLTPTEFFFHAM 594
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL 427
GREGLIDTAVKT+ +GY+QR LVK LE + V YD TVR+S +IQ YGEDG+
Sbjct: 595 GGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDVIQFCYGEDGM 649
>gi|302835796|ref|XP_002949459.1| hypothetical protein VOLCADRAFT_80692 [Volvox carteri f.
nagariensis]
gi|300265286|gb|EFJ49478.1| hypothetical protein VOLCADRAFT_80692 [Volvox carteri f.
nagariensis]
Length = 1879
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 145/447 (32%), Positives = 229/447 (51%), Gaps = 37/447 (8%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
+H +AE LM V + P+ P+ G++QD ++ ++ RD F+ + +MN +
Sbjct: 513 THETRAEMRELMMVPRNIVSPQANKPVMGIVQDSLLGTRLMTKRDIFIEKDVFMNTI--- 569
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGS 128
+ I + + PTI KP PLWTGKQ+ S + ++ K+K + +
Sbjct: 570 MGIEDWDGTVPMPTILKPKPLWTGKQIFSMFVPDVNLKNKSAWYKDTDVQDM-------- 621
Query: 129 TQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAK 188
+V D+ V IR GELL+G L KK G+ GLVH W HG A ++ + +
Sbjct: 622 -------SVDDSQVLIRSGELLTGALCKKTVGNGAGGLVHLTWLEHGPHAARGFINNVQR 674
Query: 189 LFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISS 248
++ + G ++G+ D + + K +II +A+R E L+ P
Sbjct: 675 TVNYWVLQHGMSIGIGDTVADAKTMTKVNEIIEEAKRKVKEVVEKYQQNALEAQP---GR 731
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGS 308
+ E+ F AQ+++ +L+K ++ + + +NN+ MV +G+KGS
Sbjct: 732 TIHES------FEAQVNQ----VLNKCRDDAGKAAYMSVDL----SNNIIKMVTAGSKGS 777
Query: 309 TVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFF 368
+N Q+ +GQ +EGKR RTLP F ++ P A GFV ++ G+ PQEFF
Sbjct: 778 NINISQMMGCVGQQNVEGKRIPFGFQNRTLPHFNKDDLGPEARGFVGNSYLRGLTPQEFF 837
Query: 369 FHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
FH M GREGLIDTAVKT+ +GY+QR LVK +E + V Y TVR+S ++Q LYGEDG+D
Sbjct: 838 FHAMGGREGLIDTAVKTASTGYIQRRLVKAMEDMVVRYGGTVRNSQGDVVQFLYGEDGMD 897
Query: 429 VTKRQYLTDKQFSFLEDNIKWICSYKV 455
+ + T + + D +K Y+V
Sbjct: 898 AVRIESQTFEHLKW--DPVKIDKVYRV 922
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 69/100 (69%), Gaps = 1/100 (1%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
L+L++PG+ VG +AAQS+GEP+TQMTLNTFHFAG NVTLG+PRL E++ +A K IK
Sbjct: 1079 FLALSHPGDCVGTVAAQSLGEPTTQMTLNTFHFAGVSAKNVTLGVPRLTELINLA-KNIK 1137
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKI 667
TP++ + LP + + + +A + + +V++ +I
Sbjct: 1138 TPTLTVHLLPGLRENKDRAKEVQAKLEYTCFKNVVKTTEI 1177
Score = 77.4 bits (189), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 79/145 (54%), Gaps = 2/145 (1%)
Query: 863 KESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 922
K + +L T+GIN+ + + + D + N I + GIEAA +++EV+NV +
Sbjct: 1330 KYEEWILDTEGINLEQVLAFEGV-DPRRTMSNSIIEVLEVLGIEAARAALLKEVRNVISF 1388
Query: 923 YGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSF-IQKMTFEMPLEKIRQASMQGRE 981
G V+ RHL+ + D MT G +A+ R+GI N + + + +FE ++ + +A+M G
Sbjct: 1389 DGSYVNYRHLACLVDIMTCKGCLMAITRHGINRNGNGPMTQCSFEETVDILYRAAMFGER 1448
Query: 982 DSLRAPSARVMLGQECRQGTGLFQL 1006
D L S +M+G C GTG F L
Sbjct: 1449 DRLTGVSDNIMMGNMCPLGTGAFDL 1473
>gi|83320460|gb|ABC02857.1| RNA polymerase II largest subunit, partial [Paraglomus occultum]
Length = 847
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 144/416 (34%), Positives = 214/416 (51%), Gaps = 33/416 (7%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAE + V Q + P+ P+ G++QD + + K + RD FLTR MN++ + +
Sbjct: 263 KAEIMEICMVPKQIVSPQSNKPVMGIVQDTLCAIRKFTKRDCFLTRDLVMNIL---MWVP 319
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + P I KP+P+WTGKQ+LS +I D +RH G
Sbjct: 320 DWDGHIPIPCILKPVPMWTGKQILSIIIPKGVNSDN--LRHSTHPDNETSDISPG----- 372
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
DT V I GELLSGI+ KK G++Q GL+H + G E A + L+ +
Sbjct: 373 ------DTKVLIEDGELLSGIVCKKTVGTSQQGLIHVIMQELGPEAAKNFLNGCQGVVNY 426
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L + GF++G+ D + ++ + I+ A+ E A L+ P + +
Sbjct: 427 WLLQNGFSIGIGDTIADKDTIESIAQTISNAKSRVQEIIIQAQQDKLEPQPGMTIRK--- 483
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
F +++++ + D + + L E NN++ MV SG+KGS +N
Sbjct: 484 ------TFENKVNKELNTARDAAGRSAEK-SLGE-------YNNVKQMVISGSKGSFINI 529
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EGKR RTLP F + SP + GFV+ ++ G+ P EFFFH M
Sbjct: 530 SQMSACVGQQNVEGKRIPFGFKYRTLPHFTKDDHSPESRGFVENSYLRGLTPTEFFFHAM 589
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
GREGLIDTAVKT+ +GY+QR LVK LE + V YD TVR+S +I+ YGEDG D
Sbjct: 590 GGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDVIRFCYGEDGTD 645
>gi|397135948|gb|AFO11469.1| RNA polymerase I, partial [Starmerella bombicola]
Length = 869
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 141/416 (33%), Positives = 217/416 (52%), Gaps = 39/416 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S L V Q + P+ P+ G++QD + K++LRDTFL N+++ +
Sbjct: 310 RAELSQLCAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDTFLDYHSVQNILF---WVP 366
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N + P I KP PLWTGKQ++S I P + R E
Sbjct: 367 NWDGVVPQPAILKPKPLWTGKQMVSMAI----PPGIFMQRFDE---------------NN 407
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+++ D + + GE++ G+++KK G+T GL+H ++ G + + L K+
Sbjct: 408 PINSPKDNGMLVYKGEVMYGVVNKKTVGATAGGLIHTIFREKGPQACSQFVGDLQKIVNY 467
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L VGF++G+ D + T+ I A+ + +A L+ +P + L+E
Sbjct: 468 WLLHVGFSIGIGDTIADAATMYNVTQTIADAKSKVQQIINDAQANTLNPEPGMT---LRE 524
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
+ F A + R+ S D + + L + NN++ MV +G+KGS +N
Sbjct: 525 S------FEASVIRELNSARD-TSGREAETSLKDD-------NNVKQMVSAGSKGSFINI 570
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EGKR R+LP F + SP + GFV+ ++ G+ PQEFFFH M
Sbjct: 571 SQMSACVGQQIVEGKRIGFGFVDRSLPHFTRDDYSPESKGFVENSYLRGLTPQEFFFHAM 630
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
AGREGLIDTAVKT+ +GY+QR LVK LE + V YD + R+S +IQ +YGEDGLD
Sbjct: 631 AGREGLIDTAVKTAETGYIQRRLVKALEDVMVQYDGSARNSLGDVIQFVYGEDGLD 686
>gi|401626472|gb|EJS44418.1| rpo21p [Saccharomyces arboricola H-6]
Length = 1726
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 147/422 (34%), Positives = 217/422 (51%), Gaps = 49/422 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S L V Q + P+ P G++QD + KL+LRDTF+ + +N++Y +
Sbjct: 498 RAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLY---WVP 554
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGI-LDKKQFGSTQY 131
+ + P I KP PLW+GKQVLS I N GI L + G+T
Sbjct: 555 DWDGVIPTPAIIKPKPLWSGKQVLSVAIPN----------------GIHLQRFDEGTT-- 596
Query: 132 GLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFT 191
+ + D + I G+++ G+++KK GS+ GL+H V G + L + K+
Sbjct: 597 --LLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVN 654
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARR----LGTEAACNALGLPLDTDPEIIS 247
+L GF+ G+ D + R+ T+ I +A++ + EA N L
Sbjct: 655 FWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLL------------ 702
Query: 248 SQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKG 307
+ F + R DK + +V L + NN++ MV +G+KG
Sbjct: 703 -TAKHGMTLRESFEDNVVRFLNEARDKA-GRLAEVNLKD-------LNNVKQMVMAGSKG 753
Query: 308 STVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEF 367
S +N Q+S +GQ +EGKR A RTLP F + SP + GFV+ ++ G+ PQEF
Sbjct: 754 SFINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEF 813
Query: 368 FFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL 427
FFH M GREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S ++IQ +YGEDG+
Sbjct: 814 FFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGM 873
Query: 428 DV 429
D
Sbjct: 874 DA 875
Score = 148 bits (374), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 136/447 (30%), Positives = 214/447 (47%), Gaps = 65/447 (14%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
L S+ +PGE VGVLAAQSIGEP+TQMTLNTFHFAG VT G+PRL+EIL +A K +K
Sbjct: 1054 LRSVVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVA-KNMK 1112
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCF 687
TPS+ + P +++A + ++ T L+ V I + P+P +
Sbjct: 1113 TPSLTVYLEPGHAADQEQAKLIRSAIEHTT----LKSVTIASEIYYDPDP------RSTV 1162
Query: 688 IPAHMYRDKTSVKPSKIIDHFERKF------LKELEVAIAKRAAQGLKNMNIEQSRDQME 741
IP + + S + D E+ F L LE+ RAA K++ + Q ++++
Sbjct: 1163 IPED--EEIIQLHFSLLDDEAEQSFDQQSPWLLRLEL---DRAAMNDKDLTMGQVGERIK 1217
Query: 742 DDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSE 801
++D + V E+ DE+ ++ +V + + D E +E+ M +
Sbjct: 1218 QTFKND--------------LFVIWSEDNDEKLIIRC--RVVRPKSLDAETEAEEDHMLK 1261
Query: 802 REEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNLFE 861
KIE N+ ++ V N +V YD+K +PS E
Sbjct: 1262 --------------KIENTMLENITLRGVENIERVVM-MKYDRK---------VPSPTGE 1297
Query: 862 E-KESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 920
KE + +L+TDG+N++ + +D ++Y N + GIEA + +EV NV
Sbjct: 1298 YVKEPEWVLETDGVNLSEVMTVPG-IDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVI 1356
Query: 921 AVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQG 979
A G V+ RH++L+ D MT G ++ R+G R N + + +FE +E + +A
Sbjct: 1357 ASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASA 1416
Query: 980 REDSLRAPSARVMLGQECRQGTGLFQL 1006
D R S V+LGQ GTG F +
Sbjct: 1417 ELDDCRGVSENVILGQMAPIGTGAFDV 1443
>gi|188532139|gb|ACD63081.1| RNA polymerase II largest subunit [Asparagus officinalis]
Length = 1009
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 145/424 (34%), Positives = 220/424 (51%), Gaps = 48/424 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ G++QD ++ K++ RDTF+ + +MN++ +
Sbjct: 431 RAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL---MWWE 487
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVI---INLTPKDKVIIRHGELLSGILDKKQFGST 129
+ + + P I KP PLWTGKQV + +I INL+ + H E +G +
Sbjct: 488 DFDGKVPTPAILKPRPLWTGKQVFNLIIPKQINLS---RASAWHSESETGFITPG----- 539
Query: 130 QYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKL 189
DT V I GELL+G L KK G++ L+H +W G + A L L
Sbjct: 540 ---------DTQVRIEKGELLTGTLCKKTLGTSTGSLIHVIW--VGPDAARKFLGHTQWL 588
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
+L + F++G+ D + K + I+KA+ + A L+ +P
Sbjct: 589 VNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNDVKDLIKLAQDKQLEPEP---GRT 645
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNIN---QVCLPEGLIEPFPANNLQFMVESGAK 306
+ E++ + + +L+K ++ Q L E +NNL+ MV +G+K
Sbjct: 646 MMESF----------ENRVNQVLNKARDDAGSSAQKSLSE-------SNNLKAMVTAGSK 688
Query: 307 GSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQE 366
GS +N Q++ +GQ +EGKR GRTLP F + P + GFV+ ++ G+ PQE
Sbjct: 689 GSFINISQMTACVGQQNVEGKRIPYGFIGRTLPHFTKDDYGPESRGFVENSYLRGLTPQE 748
Query: 367 FFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDG 426
FFF+ M GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +IQ LYGEDG
Sbjct: 749 FFFYAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG 808
Query: 427 LDVT 430
+D
Sbjct: 809 MDAV 812
>gi|207347072|gb|EDZ73379.1| YDL140Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 1578
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 146/422 (34%), Positives = 217/422 (51%), Gaps = 49/422 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S L V Q + P+ P G++QD + KL+LRDTF+ + +N++Y +
Sbjct: 343 RAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLY---WVP 399
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGI-LDKKQFGSTQY 131
+ + P I KP PLW+GKQ+LS I N GI L + G+T
Sbjct: 400 DWDGVIPTPAIIKPKPLWSGKQILSVAIPN----------------GIHLQRFDEGTT-- 441
Query: 132 GLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFT 191
+ + D + I G+++ G+++KK GS+ GL+H V G + L + K+
Sbjct: 442 --LLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVN 499
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARR----LGTEAACNALGLPLDTDPEIIS 247
+L GF+ G+ D + R+ T+ I +A++ + EA N L
Sbjct: 500 FWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLL------------ 547
Query: 248 SQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKG 307
+ F + R DK + +V L + NN++ MV +G+KG
Sbjct: 548 -TAKHGMTLRESFEDNVVRFLNEARDKA-GRLAEVNLKD-------LNNVKQMVMAGSKG 598
Query: 308 STVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEF 367
S +N Q+S +GQ +EGKR A RTLP F + SP + GFV+ ++ G+ PQEF
Sbjct: 599 SFINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEF 658
Query: 368 FFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL 427
FFH M GREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S ++IQ +YGEDG+
Sbjct: 659 FFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGM 718
Query: 428 DV 429
D
Sbjct: 719 DA 720
Score = 147 bits (370), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 133/449 (29%), Positives = 210/449 (46%), Gaps = 69/449 (15%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
L S+ +PGE VGVLAAQSIGEP+TQMTLNTFHFAG VT G+PRL+EIL +A K +K
Sbjct: 899 LRSVVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVA-KNMK 957
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNY------ 681
TPS+ + P +++A + ++ T L+ V I + P+P
Sbjct: 958 TPSLTVYLEPGHAADQEQAKLIRSAIEHTT----LKSVTIASEIYYDPDPRSTVIPEDEE 1013
Query: 682 --QMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQ 739
Q+ F + + P +L LE+ RAA K++ + Q ++
Sbjct: 1014 IIQLHFSLLDEEAEQSFDQQSP----------WLLRLEL---DRAAMNDKDLTMGQVGER 1060
Query: 740 MEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERM 799
++ ++D + V E+ DE+ ++ +V + + D E +E+ M
Sbjct: 1061 IKQTFKND--------------LFVIWSEDNDEKLIIRC--RVVRPKSLDAETEAEEDHM 1104
Query: 800 SEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNL 859
+ KIE N+ ++ V N +V YD+K +PS
Sbjct: 1105 LK--------------KIENTMLENITLRGVENIERVVM-MKYDRK---------VPSPT 1140
Query: 860 FEE-KESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKN 918
E KE + +L+TDG+N++ + +D ++Y N + GIEA + +EV N
Sbjct: 1141 GEYVKEPEWVLETDGVNLSEVMTVPG-IDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYN 1199
Query: 919 VFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASM 977
V A G V+ RH++L+ D MT G ++ R+G R N + + +FE +E + +A
Sbjct: 1200 VIASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGA 1259
Query: 978 QGREDSLRAPSARVMLGQECRQGTGLFQL 1006
D R S V+LGQ GTG F +
Sbjct: 1260 SAELDDCRGVSENVILGQMAPIGTGAFDV 1288
>gi|341859016|gb|AEK97418.1| ribosomal polymerase II largest subunit [Cordyceps cicadae]
Length = 954
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 152/425 (35%), Positives = 221/425 (52%), Gaps = 56/425 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + + P+ PL G++QD + KL RDTF+ + NL+ L +
Sbjct: 416 RAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGAYKLCRRDTFIDKEFVQNLM---LWVP 472
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVI---INLTPKDKVIIRHGELLSGILDKKQFGST 129
N + P I KP P WTGKQ++S VI I+L K+ DK
Sbjct: 473 NWDGVIPQPAILKPRPRWTGKQIISMVIPPEISLYSKE--------------DK------ 512
Query: 130 QYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L + D + I+ GEL+ G+L KK G+ G++H ++ G E A++ L+ + ++
Sbjct: 513 ---LDNPKHDAGLLIQSGELMYGLLKKKNVGAASGGIIHLCYNELGPEGAMAFLNGVQQV 569
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKAR----RLGTEAACNAL-GLPLDTDPE 244
T +L G ++G+ D + ++ K I++ + RL +A N L LP
Sbjct: 570 VTYWLLNTGHSIGIGDTVPDKQTIEKVQAHIDEHKAEVARLTAQATANELEALPGMNVRA 629
Query: 245 IISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESG 304
+++ A ++ + +A Q KSL D +NN M ESG
Sbjct: 630 TFENKVSMAL-NMARDQAGTSTQ-KSLKD--------------------SNNAVTMAESG 667
Query: 305 AKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQP 364
+KGS++N Q++ L+GQ +EGKR RTLP F + SP A GFV+ ++ G+ P
Sbjct: 668 SKGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTP 727
Query: 365 QEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGE 424
EFFFH MAGREGLIDTAVKT+ +GY+QR LVK LE L+ YD TVR+S +IQ LYGE
Sbjct: 728 TEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDVIQFLYGE 787
Query: 425 DGLDV 429
DGLD
Sbjct: 788 DGLDA 792
>gi|429962270|gb|ELA41814.1| hypothetical protein VICG_01166 [Vittaforma corneae ATCC 50505]
Length = 1569
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 137/426 (32%), Positives = 221/426 (51%), Gaps = 32/426 (7%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVY-- 66
S+ KAE L V Q + P+ P+ G++QD ++ L++RD F + E MNL+Y
Sbjct: 463 SYATKAELGLLTAVDKQIVSPQSNKPVIGIVQDTLVGSRLLTVRDAFFNKREAMNLLYSF 522
Query: 67 QALCILNTE-IRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQ 125
+ N + + L PTI +P+ LWTGKQ+ S ++ + +R +D K
Sbjct: 523 NSFGKKNEDFLDYLRPTILQPVELWTGKQLFSAILPRI-----FYMRDSNADISEMDNKG 577
Query: 126 FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSC 185
+ S + D+ IR+G LL+G +DKK G+ Q GL+H +++ +G+E A + +
Sbjct: 578 WNSIN------LTDSTAIIRNGVLLAGPIDKKSVGAQQGGLIHIIFNDYGSEAAKNFIDN 631
Query: 186 LAKLFTVYLQRVG-FTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPE 244
+ ++ T +L + F++G+ D + +R T + +R +E E
Sbjct: 632 IQRIVTHFLLHISSFSVGIGDCVAD---NRTLTLCKSAVKRAMSEVD------------E 676
Query: 245 IISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESG 304
II+ + +P + ++S ++ + N + N ++ MV SG
Sbjct: 677 IIALTKKNELEKMPGM--TLSETFESRVNVILNKARNISGTSAQNSLNSCNYMKAMVLSG 734
Query: 305 AKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQP 364
+KGS +N QI LGQ +EGKR R+LP F Y+ S ++ GFV +++G+ P
Sbjct: 735 SKGSYINISQIITCLGQQNVEGKRIPFGFFERSLPHFYKYDFSAKSRGFVQNSYLSGMDP 794
Query: 365 QEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGE 424
EFFFH M GREG+IDTA+KT+ +GY+QR LVK LE VH+D +VR+ + Q YG+
Sbjct: 795 DEFFFHAMGGREGIIDTAIKTAETGYIQRRLVKALEDAIVHHDFSVRNGRGDIYQFSYGD 854
Query: 425 DGLDVT 430
DG D T
Sbjct: 855 DGFDAT 860
Score = 79.7 bits (195), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 51/68 (75%), Gaps = 2/68 (2%)
Query: 566 KNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKA 625
K L + N E VG LAAQS+GEP+TQMTLNTFH AG VT+G+PRL EI+ +A K+
Sbjct: 1001 KILRAKVNANEMVGTLAAQSVGEPATQMTLNTFHLAGVAS-TVTMGVPRLNEIINLA-KS 1058
Query: 626 IKTPSMEI 633
IKTPSM+I
Sbjct: 1059 IKTPSMQI 1066
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 89/161 (55%), Gaps = 6/161 (3%)
Query: 845 KNHMWCKLLFLPSNLFEEKESKHLLKTDGINVNFISQYRHL-LDLNKLYVNDIHYMASTY 903
+ H K +L +NL + +S+ L+TDGI+ F+S +D ++ NDI+ + S
Sbjct: 1212 QGHTQIKKAYL-TNLNKLDKSEWCLQTDGID--FLSVLSAPNIDGTRVMANDIYVIYSVL 1268
Query: 904 GIEAANRVIIREVKNVFAVYGIE-VDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQ 961
G+EAA + I+ E+ V G V+ RH+SL+AD MT G + R+G+ R + S ++
Sbjct: 1269 GVEAARQSILNELSLVIEDNGSSYVNHRHMSLLADVMTVKGYLTGITRHGVSRQSASVLK 1328
Query: 962 KMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTG 1002
+ +FE ++ + A+ D+++ S +MLGQ GTG
Sbjct: 1329 RASFEETVDVLLDAAANSELDAVKGVSENIMLGQLPPVGTG 1369
>gi|19172989|ref|NP_597540.1| DNA-DIRECTED RNA POLYMERASE II [Encephalitozoon cuniculi GB-M1]
gi|51702033|sp|Q8SSC4.1|RPB1_ENCCU RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit 1; Short=RNA polymerase
II subunit B1; AltName: Full=DNA-directed RNA polymerase
III largest subunit
gi|19168656|emb|CAD26175.1| DNA-DIRECTED RNA POLYMERASE II [Encephalitozoon cuniculi GB-M1]
Length = 1599
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 149/446 (33%), Positives = 220/446 (49%), Gaps = 62/446 (13%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S+ KAE L VS Q + P+ P+ G++QD + +LRDTFL E M+L+Y
Sbjct: 463 SYTSKAELEELALVSRQIISPQSNKPVMGIVQDTLTGLRLFTLRDTFLNEREVMSLLYA- 521
Query: 69 LCILNTEIRTLP-----------------------PTIWKPMPLWTGKQVLSTVIINLTP 105
+N E +P P I KPM LWTGKQVLS V+ NL
Sbjct: 522 ---VNLEFCDIPLGDAVQTGLRKGKDYDIMKILRKPAIAKPMRLWTGKQVLSFVLPNLN- 577
Query: 106 KDKVIIRHGELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYG 165
+ H + DK+ G DT V I+ G + SG++DKK G+TQ G
Sbjct: 578 YIGLSSEHDDD-----DKENIG-----------DTRVIIQDGYIHSGVIDKKAAGATQGG 621
Query: 166 LVHAVWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKAR 224
LVH +++ G + A + ++ ++ + F++G+ D + D K K++ A
Sbjct: 622 LVHIIFNDFGPKRAAQFFDGVQRMINAFMTGIHTFSMGIGDTIA----DPKTVKVVESAI 677
Query: 225 RLGTEAACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCL 284
R E +I + Q +P + ++S L+ V N V
Sbjct: 678 RKAKEEVS-----------ALIENARQNRLERLPGM--TMKESFESHLNLVLNRARDVSG 724
Query: 285 PEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPY 344
NN++ MV +G+KGS +N Q++ +GQ +EGKR S RTLP F+
Sbjct: 725 TSAQRSLSENNNMKTMVLAGSKGSFINISQVTACVGQQNVEGKRIPFGFSHRTLPHFVKD 784
Query: 345 EVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTV 404
+ + ++ GFV+ ++TG+ P+EFFFH M GREGLIDTA+KT+ +GY+QR LVK LE V
Sbjct: 785 DYTGKSRGFVENSYLTGLDPEEFFFHAMGGREGLIDTAIKTAETGYIQRRLVKALEDAIV 844
Query: 405 HYDMTVRDSDLSLIQVLYGEDGLDVT 430
D +VR + + Q+ YGEDG D T
Sbjct: 845 RQDESVRSGNGLVYQIKYGEDGFDAT 870
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 64/101 (63%), Gaps = 2/101 (1%)
Query: 561 DMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILM 620
++I K L + P E VG LAAQS+GEP+TQMTLNTFH AG VT+G+PRL+EI
Sbjct: 1032 EVIDAKILKAKITPNEMVGTLAAQSVGEPATQMTLNTFHLAGVAS-TVTMGVPRLKEIFN 1090
Query: 621 MATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADV 661
+ TK +KTPSM+I + K + A + + +T+ D+
Sbjct: 1091 V-TKNLKTPSMKIYLDREHGKSIEAAKTIQNEIECLTVKDL 1130
Score = 67.0 bits (162), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 86/159 (54%), Gaps = 7/159 (4%)
Query: 861 EEKESKH-LLKTDGINVNFISQYRHLLDLN-KLYV-NDIHYMASTYGIEAANRVIIREVK 917
E+K+ K L+TDGI +SQ +N +L + ND+ +A T GIEAA I+RE+
Sbjct: 1260 EDKDRKEWYLQTDGI---CLSQILGNPAVNSRLTISNDLVEIAETLGIEAARESILRELT 1316
Query: 918 NVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQAS 976
V G V+ RH+SL+AD MT G + R+G+ ++ +++ +FE +E + A+
Sbjct: 1317 IVIDGNGSYVNYRHMSLLADVMTMRGYLCGITRHGVNKVGAGALKRSSFEETVEILLDAA 1376
Query: 977 MQGREDSLRAPSARVMLGQECRQGTGLFQLRNREKKKKK 1015
+ ++ R + +M+GQ GTG ++ KK K
Sbjct: 1377 LVSEKNICRGITENIMMGQLAPMGTGNIEIMLDMKKLDK 1415
>gi|397135810|gb|AFO11400.1| RNA polymerase I, partial [Ogataea glucozyma]
Length = 870
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 141/424 (33%), Positives = 223/424 (52%), Gaps = 43/424 (10%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S+ +AE S + V Q + P+ P+ G++QD + K++LRD+F+ + MN+ +
Sbjct: 307 SYETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDSFIEYDQVMNMCF-- 364
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR-HGELLSGILDKKQFG 127
I N + P I KP PLW+GKQ+LS I P+ + R G LLS
Sbjct: 365 -WIPNWDGVVPQPAILKPKPLWSGKQILSMCI----PRGIFLQRLDGSLLSP-------- 411
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
D+ + I +GE++ G+++K G++ GL+H V G L +
Sbjct: 412 ----------KDSGMLIVNGEIMFGVVNKATVGASAGGLIHTVMREKGPTVCAQLFGNIQ 461
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIIS 247
K+ +L GF++G+ D + + T+ I A+ E +A L+ +P +
Sbjct: 462 KVVNYWLLHNGFSIGIGDAIADSATMKTITETIAVAKEKVQEVIIDAQNNLLEAEPGMT- 520
Query: 248 SQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKG 307
R +++ LL++ ++ + E ++ +NN++ MV +G+KG
Sbjct: 521 ------------VRESFEQKVSKLLNEARDSAGKSA--ETSLKD--SNNVKQMVTAGSKG 564
Query: 308 STVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEF 367
S +N Q+S +GQ +EGKR + R+LP F + S + GFV+ ++ G+ PQEF
Sbjct: 565 SYINISQMSACVGQQIVEGKRINFGFADRSLPHFTKDDYSAESKGFVENSYLRGLTPQEF 624
Query: 368 FFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL 427
FFH MAGREGLIDTAVKT+ +GY+QR L+K LE + VHYD T R+S +IQ LYGEDG+
Sbjct: 625 FFHAMAGREGLIDTAVKTAETGYIQRRLLKALEDIMVHYDGTTRNSLGDIIQFLYGEDGI 684
Query: 428 DVTK 431
D T+
Sbjct: 685 DGTQ 688
>gi|337263096|gb|AEI69259.1| DNA-directed RNA polymerase II largest subunit [Encephalitozoon
romaleae]
gi|396081019|gb|AFN82638.1| DNA-directed RNA polymerase II largest subunit [Encephalitozoon
romaleae SJ-2008]
Length = 1515
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 147/446 (32%), Positives = 218/446 (48%), Gaps = 62/446 (13%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S+ KAE L VS Q + P+ P+ G++QD + +LRDTFL E M L+Y
Sbjct: 463 SYTSKAELEELALVSKQIISPQSNKPVMGIVQDTLTGLRLFTLRDTFLNEREVMLLLYA- 521
Query: 69 LCILNTEIRTLPP-----------------------TIWKPMPLWTGKQVLSTVIINLTP 105
+N E PP I KPM LWTGKQ+LS V+ N+
Sbjct: 522 ---VNIEFCDTPPGGTSYMELRRTKDYDIMKVLKRPAIAKPMKLWTGKQILSFVLPNMN- 577
Query: 106 KDKVIIRHGELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYG 165
G + + + DT V I+ G + SG++DKK G+TQ G
Sbjct: 578 -----------YVGFSSEHNDNDNE-----NISDTKVIIQDGYIHSGVIDKKAAGATQGG 621
Query: 166 LVHAVWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKAR 224
LVH +++ G + A + + ++ V++ + F++G+ D + D K K++ +A
Sbjct: 622 LVHIIFNDFGPKRAAQFFNGVQRMINVFMTGIHTFSIGIGDTIA----DAKTVKMVKEAI 677
Query: 225 RLGTEAACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCL 284
R E II + Q +P + ++S L+ V N V
Sbjct: 678 RKAKEEVS-----------VIIENARQNRLERLPGM--TMKESFESHLNLVLNRARDVSG 724
Query: 285 PEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPY 344
NN++ MV +G+KGS +N Q++ +GQ +EGKR S RTLP F+
Sbjct: 725 TSAQRSLSENNNMKTMVLAGSKGSFINISQVTACVGQQNVEGKRIPFGFSHRTLPHFVKD 784
Query: 345 EVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTV 404
+ + R+ GFV+ ++TG+ P+EFFFH M GREGLIDTA+KT+ +GY+QR LVK LE V
Sbjct: 785 DYTGRSRGFVENSYLTGLDPEEFFFHAMGGREGLIDTAIKTAETGYIQRRLVKALEDAIV 844
Query: 405 HYDMTVRDSDLSLIQVLYGEDGLDVT 430
D +VR + + Q+ YGEDG D T
Sbjct: 845 RQDESVRSGNGLMYQIKYGEDGFDAT 870
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/101 (46%), Positives = 63/101 (62%), Gaps = 2/101 (1%)
Query: 561 DMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILM 620
+MI K L + P E VG LAAQS+GEP+TQMTLNTFH AG VT+G+PRL+EI
Sbjct: 1032 EMINAKILQARITPNEMVGTLAAQSVGEPATQMTLNTFHLAGVSS-TVTMGVPRLKEIFN 1090
Query: 621 MATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADV 661
+ TK +KTPSM+I D K + A + + + + D+
Sbjct: 1091 V-TKNLKTPSMKIYLDKDHCKTIESAKVIQNEIECLCVKDL 1130
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 61/110 (55%), Gaps = 1/110 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
ND+ +A T GIEAA I+RE+ V G V+ RH+SL+AD MT G + R+G+
Sbjct: 1293 NDLIEIAETLGIEAARESILRELAMVIDGNGSYVNYRHMSLLADVMTMRGYLCGITRHGV 1352
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTG 1002
+ +++ +FE +E + A++ ++ R + +M+GQ GTG
Sbjct: 1353 NKAGAGALKRSSFEETVEILLDAALVSEKNLCRGITENIMMGQLAPMGTG 1402
>gi|403417006|emb|CCM03706.1| predicted protein [Fibroporia radiculosa]
Length = 1621
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 148/416 (35%), Positives = 223/416 (53%), Gaps = 39/416 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S + V Q + P+ P+ ++QD + K +LRDTFL + N++ L +
Sbjct: 361 RAELSQIAWVPRQIISPQANKPVMAIVQDTLCGIRKFTLRDTFLDWNQVQNIL---LWVP 417
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + PT+ KP PLWTGKQ+LS I P+ I R D K F
Sbjct: 418 DWDGSVPLPTVIKPKPLWTGKQILSMCI----PRGINIYRSP-------DPKSF------ 460
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ V+D + I +GE+L G+++KK G++Q GL+H + G E +L S L ++
Sbjct: 461 --NPVFDDGMNIENGEILFGVVEKKTVGASQGGLIHITFREKGPEVTRALFSGLQQVVNY 518
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + + + I ++ T+A +A L P + ++E
Sbjct: 519 WLFHNGFSIGIGDTIADRGTMAHIQEQIAIRKQNVTQAIDDATHDRLKAAPGMT---IRE 575
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
+ F ++++R+ D+ Q L E NN++ MV +G+KGS +N
Sbjct: 576 S------FESRVERELNLARDQ-NGQYAQKNLKED-------NNVKQMVVAGSKGSFINI 621
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EG+R RTLP F + P A GFV+ ++ G+ PQEFFFH M
Sbjct: 622 SQMSVCVGQQIVEGRRIPYGFRHRTLPHFTKDDFGPEARGFVENSYLRGLTPQEFFFHAM 681
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
AGREGLIDTAVKT+ +GY+QR LVK LE + V YD TVR+S LIQ +YGEDG+D
Sbjct: 682 AGREGLIDTAVKTAETGYIQRRLVKALEDVMVCYDGTVRNSLGDLIQFVYGEDGMD 737
Score = 102 bits (254), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 72/106 (67%), Gaps = 3/106 (2%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
SLA+PGE G LAAQSIGEP+TQMTLNTFH+AG NVTLG+PRL+EI+ +AT IKTP
Sbjct: 921 SLAHPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATN-IKTP 979
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISP 675
S+ I P++ K + AN + + + ++ V V+I W + P
Sbjct: 980 SLSIYLDPEIAKDQISANSVQQELAYTSLRTVTAAVEI--WYDPDP 1023
Score = 80.1 bits (196), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 77/144 (53%), Gaps = 2/144 (1%)
Query: 864 ESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
E + +L+TDG+N+ + + D + Y N + + GIEAA I++E++ V
Sbjct: 1170 EKEWVLETDGVNLKAVMSIGGV-DFKRTYSNSCVEVFNVLGIEAARAAIMKELRGVIEFD 1228
Query: 924 GIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGRED 982
G V+ RHLSL+ D MTH G +A+ R+GI R + + + +FE +E + +A+ G D
Sbjct: 1229 GSYVNYRHLSLLCDLMTHRGILMAITRHGINRADTGALMRSSFEETVEILMEAAAVGERD 1288
Query: 983 SLRAPSARVMLGQECRQGTGLFQL 1006
+ V+ GQ GTG F +
Sbjct: 1289 DCHGIAENVIFGQMAPMGTGAFDV 1312
>gi|120561201|gb|ABM26986.1| RNA polymerase II largest subunit, partial [Pichia kudriavzevii]
Length = 1647
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 140/422 (33%), Positives = 218/422 (51%), Gaps = 41/422 (9%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S+ +AE S L V Q + P+ P+ G++QD + K++LRDTF+ + MN+ Y
Sbjct: 419 SYETRAELSELCAVPLQIISPQSNKPVMGIVQDTLCGVRKMTLRDTFIEYDQVMNMCY-- 476
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGS 128
I + + P I KP PLW+GKQ+LS I N GI ++ GS
Sbjct: 477 -WIPDWDGVVPQPAILKPKPLWSGKQILSLCIPN----------------GIFLQRLDGS 519
Query: 129 TQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAK 188
+ + D+ + I +GE++ G+++K G++ GL+H G + + K
Sbjct: 520 -----LTSPKDSGMLIVNGEIMFGVVNKATVGASAGGLIHTTMREKGPTTCAKMFGNIQK 574
Query: 189 LFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISS 248
+ +L GF++G+ D + E + T+ I +A+ A L+ +P +
Sbjct: 575 VVNYWLLHNGFSIGIGDAIADPETMKTITETIKEAKDKVQTVIREAQKNLLEAEPGMT-- 632
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGS 308
L+E++ + + K+ N +NN++ MV +G+KGS
Sbjct: 633 -LRESF--------------EQKVSKILNEARDAAGKSAETSLKDSNNVKQMVTAGSKGS 677
Query: 309 TVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFF 368
+N Q+S +GQ +EGKR + R+LP F + S + GFV+ ++ G+ PQEFF
Sbjct: 678 YINISQMSACVGQQIVEGKRINFGFADRSLPHFTTDDYSAESKGFVENSYLRGLTPQEFF 737
Query: 369 FHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
FH MAGREGLIDTAVKT+ +GY+QR L+K LE + VHYD T R+S +IQ +YGEDGLD
Sbjct: 738 FHAMAGREGLIDTAVKTAETGYIQRRLLKALEDIMVHYDGTTRNSLGDVIQFIYGEDGLD 797
Query: 429 VT 430
T
Sbjct: 798 AT 799
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
SL NPGE VGV+AAQSIGEP+TQMTLNTFH+AG NVTLG+PRL+EIL +A K KTP
Sbjct: 980 SLVNPGEMVGVVAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVA-KNFKTP 1038
Query: 630 SMEI 633
++ +
Sbjct: 1039 ALTV 1042
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 77/145 (53%), Gaps = 2/145 (1%)
Query: 863 KESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 922
K+ + +L+TDGIN+ + + D + Y N + +GIEAA + +E+ NV A
Sbjct: 1225 KKQEWVLETDGINLADVITVEGI-DTTRTYSNSFVEILFVFGIEAARSALYKEILNVIAF 1283
Query: 923 YGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPS-FIQKMTFEMPLEKIRQASMQGRE 981
G V+ RHL+L+ D MT+ G +A++R+G N + + + +FE +E + A
Sbjct: 1284 DGSYVNYRHLALLVDLMTYKGHLIAISRHGFNRNDTGALMRCSFEETVEILFDAGASAEL 1343
Query: 982 DSLRAPSARVMLGQECRQGTGLFQL 1006
D+ S ++LGQ GTG F +
Sbjct: 1344 DTCDGVSQNIILGQMAPFGTGSFDV 1368
>gi|303388581|ref|XP_003072524.1| DNA-directed RNA polymerase II largest subunit [Encephalitozoon
intestinalis ATCC 50506]
gi|303301665|gb|ADM11164.1| DNA-directed RNA polymerase II largest subunit [Encephalitozoon
intestinalis ATCC 50506]
Length = 1543
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 148/446 (33%), Positives = 222/446 (49%), Gaps = 62/446 (13%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S+ KAE L VS Q + P+ P+ G++QD + +LRDTFL E M L+Y
Sbjct: 463 SYTSKAELEELALVSKQIISPQSNKPVMGIVQDTLTGLRLFTLRDTFLNEREVMLLLYA- 521
Query: 69 LCILNTEIR-TLP----------------------PTIWKPMPLWTGKQVLSTVIINLTP 105
+N E T P P I KPM LWTGKQ+LS V+ NL
Sbjct: 522 ---VNIEFSDTAPGETTYMGVNRTKDYDIMKVLKNPAIAKPMKLWTGKQILSFVLPNLN- 577
Query: 106 KDKVIIRHGELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYG 165
+G + + + DT V I++G + SG++DKK G+TQ G
Sbjct: 578 -----------YTGFSSEHNEDDNE-----NINDTKVIIQNGYIHSGVIDKKAAGATQGG 621
Query: 166 LVHAVWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKAR 224
L+H +++ G + A + + K+ +++ + F++G+ D + D K K++++A
Sbjct: 622 LIHIIFNDFGPKRAAQFFNGVQKMINIFMTGIHTFSIGIGDTIA----DAKTVKMVDEAI 677
Query: 225 RLGTEAACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCL 284
R E II + Q +P + ++S L+ V N V
Sbjct: 678 RKAKEEVS-----------IIIENARQNRLERLPGM--TMKESFESHLNLVLNRARDVSG 724
Query: 285 PEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPY 344
NN++ MV +G+KGS +N Q++ +GQ +EGKR S RTLP F+
Sbjct: 725 TSAQRSLSGNNNMKTMVLAGSKGSFINISQVTACVGQQNVEGKRIPFGFSQRTLPHFVKD 784
Query: 345 EVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTV 404
+ + ++ GFV+ ++TG+ P+EFFFH M GREGLIDTA+KT+ +GY+QR LVK LE V
Sbjct: 785 DYTGKSRGFVENSYLTGLDPEEFFFHAMGGREGLIDTAIKTAETGYIQRRLVKALEDAIV 844
Query: 405 HYDMTVRDSDLSLIQVLYGEDGLDVT 430
D +VR + + QV YGEDG D T
Sbjct: 845 RQDESVRSGNGLVYQVKYGEDGFDAT 870
Score = 80.1 bits (196), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/101 (46%), Positives = 64/101 (63%), Gaps = 2/101 (1%)
Query: 561 DMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILM 620
+MI K L + P E VG LAAQS+GEP+TQMTLNTFH AG VT+G+PRL+EI
Sbjct: 1032 EMIRAKILKAKITPNEMVGTLAAQSVGEPATQMTLNTFHLAGVSS-TVTMGVPRLKEIFN 1090
Query: 621 MATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADV 661
+ TK +KTPSM+I + K + A + + +T+ D+
Sbjct: 1091 V-TKNLKTPSMKIYLDKEHCKTIELAKTIQNEIECLTVKDL 1130
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 62/110 (56%), Gaps = 1/110 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
ND+ +A T GIEAA I+RE+ V G V+ RH+SL+AD MT G + R+G+
Sbjct: 1293 NDLIEIAETLGIEAARESILRELAIVIDGNGSYVNYRHMSLLADVMTMRGYLCGITRHGV 1352
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTG 1002
++ +++ +FE +E + A++ ++ R + +M+GQ GTG
Sbjct: 1353 NKVGAGALKRSSFEETVEILLDAALVSEKNLCRGITENIMMGQLAPMGTG 1402
>gi|366998165|ref|XP_003683819.1| hypothetical protein TPHA_0A03070 [Tetrapisispora phaffii CBS 4417]
gi|357522114|emb|CCE61385.1| hypothetical protein TPHA_0A03070 [Tetrapisispora phaffii CBS 4417]
Length = 1719
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 143/420 (34%), Positives = 218/420 (51%), Gaps = 45/420 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S L +V Q + P+ P G++QD + KL+LRD F+ + +N++Y +
Sbjct: 498 RAELSQLCSVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDCFIELDQLLNMLY---WVP 554
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + P I KP+PLW+GKQ+LS I PK + R E G+T
Sbjct: 555 DWDGIIPTPAIIKPVPLWSGKQILSIAI----PKGIHLQRFDE-----------GTTML- 598
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ D + I G+++ G++DKK GS+ GL+H V G + + + K+
Sbjct: 599 ---SPKDNGMLIIDGQIIFGVVDKKTVGSSNGGLIHVVTREKGPQICAKMFGNIQKVVNF 655
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+ GF+ G+ D + ++ T+ I A+R E +E
Sbjct: 656 WFLHNGFSTGIGDTIADGGTMKEITETIADAKRKVEEVT-------------------KE 696
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPF---PANNLQFMVESGAKGST 309
A A++ + + + +S D V +N+ G + NN++ MV +G+KGS
Sbjct: 697 AQANLLTAKHGMTLR-ESFEDNVVRFLNEARDKAGRLAEVNLNDLNNVKQMVSAGSKGSF 755
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+S +GQ +EGKR A RTLP F + SP + GFV+ ++ G+ PQEFFF
Sbjct: 756 INIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFF 815
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H M GREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S ++IQ +YGEDG+D
Sbjct: 816 HAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDSTTRNSLGNVIQFVYGEDGIDA 875
Score = 146 bits (368), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 133/441 (30%), Positives = 210/441 (47%), Gaps = 53/441 (12%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
L S+ +PGE VGVLAAQSIGEP+TQMTLNTFHFAG VT G+PRL+EIL +A K +K
Sbjct: 1054 LRSIVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVA-KNMK 1112
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCF 687
TPS + P+ ++KA + ++ T L+ V + + P+P +
Sbjct: 1113 TPSSTVYLDPEYATDQEKAKIIRSAIEHTT----LKSVTVASEIYYDPDPTTTVIAEDEE 1168
Query: 688 IPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDD 747
I ++ + K ID+ + +L LE+ RAA K++ + Q +++++
Sbjct: 1169 I-IQLHYSLMDSETEKNIDN-QSPWLLRLEL---DRAAMNDKDLTMVQVGEKIKETF--- 1220
Query: 748 EGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDN 807
R D+S D D + +V + + D E +E+ M ++ E+
Sbjct: 1221 -------------RNDLSVIWSEDNADKLIIRCRVVRPKSLDAETEAEEDHMLKKIENTM 1267
Query: 808 TSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNLFE-EKESK 866
+I R V+D+ V YD+K +PS E +K +
Sbjct: 1268 LESITLR-----------GVEDIER----VVMMKYDRK---------MPSETGEYQKVPE 1303
Query: 867 HLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIE 926
+L+TDG+N+ + +D +++Y N + GIEA + REV NV A G
Sbjct: 1304 WVLETDGVNLMEVMTVPG-VDGSRIYTNSFIDITEVLGIEAGRAALYREVYNVIASDGSY 1362
Query: 927 VDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLR 985
V+ RH++L+ D MT G ++ R+G R N + + +FE +E + +A D R
Sbjct: 1363 VNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCR 1422
Query: 986 APSARVMLGQECRQGTGLFQL 1006
S V+LGQ GTG F +
Sbjct: 1423 GVSENVILGQMAPIGTGAFDV 1443
>gi|256273567|gb|EEU08500.1| Rpo21p [Saccharomyces cerevisiae JAY291]
Length = 1733
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 146/422 (34%), Positives = 217/422 (51%), Gaps = 49/422 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S L V Q + P+ P G++QD + KL+LRDTF+ + +N++Y +
Sbjct: 498 RAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLY---WVP 554
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGI-LDKKQFGSTQY 131
+ + P I KP PLW+GKQ+LS I N GI L + G+T
Sbjct: 555 DWDGVIPTPAIIKPKPLWSGKQILSVAIPN----------------GIHLQRFDEGTT-- 596
Query: 132 GLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFT 191
+ + D + I G+++ G+++KK GS+ GL+H V G + L + K+
Sbjct: 597 --LLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVN 654
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARR----LGTEAACNALGLPLDTDPEIIS 247
+L GF+ G+ D + R+ T+ I +A++ + EA N L
Sbjct: 655 FWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLL------------ 702
Query: 248 SQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKG 307
+ F + R DK + +V L + NN++ MV +G+KG
Sbjct: 703 -TAKHGMTLRESFEDNVVRFLNEARDKA-GRLAEVNLKD-------LNNVKQMVMAGSKG 753
Query: 308 STVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEF 367
S +N Q+S +GQ +EGKR A RTLP F + SP + GFV+ ++ G+ PQEF
Sbjct: 754 SFINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEF 813
Query: 368 FFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL 427
FFH M GREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S ++IQ +YGEDG+
Sbjct: 814 FFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGM 873
Query: 428 DV 429
D
Sbjct: 874 DA 875
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 133/449 (29%), Positives = 210/449 (46%), Gaps = 69/449 (15%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
L S+ +PGE VGVLAAQSIGEP+TQMTLNTFHFAG VT G+PRL+EIL +A K +K
Sbjct: 1054 LRSVVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVA-KNMK 1112
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNY------ 681
TPS+ + P +++A + ++ T L+ V I + P+P
Sbjct: 1113 TPSLTVYLEPGHAADQEQAKLIRSAIEHTT----LKSVTIASEIYYDPDPRSTVIPEDEE 1168
Query: 682 --QMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQ 739
Q+ F + + P +L LE+ RAA K++ + Q ++
Sbjct: 1169 IIQLHFSLLDEEAEQSFDQQSP----------WLLRLEL---DRAAMNDKDLTMGQVGER 1215
Query: 740 MEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERM 799
++ ++D + V E+ DE+ ++ +V + + D E +E+ M
Sbjct: 1216 IKQTFKND--------------LFVIWSEDNDEKLIIRC--RVVRPKSLDAETEAEEDHM 1259
Query: 800 SEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNL 859
+ KIE N+ ++ V N +V YD+K +PS
Sbjct: 1260 LK--------------KIENTMLENITLRGVENIERVVM-MKYDRK---------VPSPT 1295
Query: 860 FEE-KESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKN 918
E KE + +L+TDG+N++ + +D ++Y N + GIEA + +EV N
Sbjct: 1296 GEYVKEPEWVLETDGVNLSEVMTVPG-IDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYN 1354
Query: 919 VFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASM 977
V A G V+ RH++L+ D MT G ++ R+G R N + + +FE +E + +A
Sbjct: 1355 VIASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGA 1414
Query: 978 QGREDSLRAPSARVMLGQECRQGTGLFQL 1006
D R S V+LGQ GTG F +
Sbjct: 1415 SAELDDCRGVSENVILGQMAPIGTGAFDV 1443
>gi|449329642|gb|AGE95912.1| DNA-directed RNA polymerase II, partial [Encephalitozoon cuniculi]
Length = 1487
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 149/446 (33%), Positives = 220/446 (49%), Gaps = 62/446 (13%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S+ KAE L VS Q + P+ P+ G++QD + +LRDTFL E M+L+Y
Sbjct: 463 SYTSKAELEELALVSRQIISPQSNKPVMGIVQDTLTGLRLFTLRDTFLNEREVMSLLYA- 521
Query: 69 LCILNTEIRTLP-----------------------PTIWKPMPLWTGKQVLSTVIINLTP 105
+N E +P P I KPM LWTGKQVLS V+ NL
Sbjct: 522 ---VNLEFCDIPLGDAVQTGLRKGKDYDIMKILRKPAIAKPMRLWTGKQVLSFVLPNLN- 577
Query: 106 KDKVIIRHGELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYG 165
+ H + DK+ G DT V I+ G + SG++DKK G+TQ G
Sbjct: 578 YIGLSSEHDDD-----DKENIG-----------DTRVIIQDGYIHSGVIDKKAAGATQGG 621
Query: 166 LVHAVWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKAR 224
LVH +++ G + A + ++ ++ + F++G+ D + D K K++ A
Sbjct: 622 LVHIIFNDFGPKRAAQFFDGVQRMINAFMTGIHTFSMGIGDTIA----DPKTVKVVESAI 677
Query: 225 RLGTEAACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCL 284
R E +I + Q +P + ++S L+ V N V
Sbjct: 678 RKAKEEVS-----------ALIENARQNRLERLPGM--TMKESFESHLNLVLNRARDVSG 724
Query: 285 PEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPY 344
NN++ MV +G+KGS +N Q++ +GQ +EGKR S RTLP F+
Sbjct: 725 TSAQRSLSENNNMKTMVLAGSKGSFINISQVTACVGQQNVEGKRIPFGFSHRTLPHFVKD 784
Query: 345 EVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTV 404
+ + ++ GFV+ ++TG+ P+EFFFH M GREGLIDTA+KT+ +GY+QR LVK LE V
Sbjct: 785 DYTGKSRGFVENSYLTGLDPEEFFFHAMGGREGLIDTAIKTAETGYIQRRLVKALEDAIV 844
Query: 405 HYDMTVRDSDLSLIQVLYGEDGLDVT 430
D +VR + + Q+ YGEDG D T
Sbjct: 845 RQDESVRSGNGLVYQIKYGEDGFDAT 870
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 64/101 (63%), Gaps = 2/101 (1%)
Query: 561 DMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILM 620
++I K L + P E VG LAAQS+GEP+TQMTLNTFH AG VT+G+PRL+EI
Sbjct: 1032 EVIDAKILKAKITPNEMVGTLAAQSVGEPATQMTLNTFHLAGVAS-TVTMGVPRLKEIFN 1090
Query: 621 MATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADV 661
+ TK +KTPSM+I + K + A + + +T+ D+
Sbjct: 1091 V-TKNLKTPSMKIYLDREHGKSIEAAKTIQNEIECLTVKDL 1130
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 86/159 (54%), Gaps = 7/159 (4%)
Query: 861 EEKESKH-LLKTDGINVNFISQYRHLLDLN-KLYV-NDIHYMASTYGIEAANRVIIREVK 917
E+K+ K L+TDGI +SQ +N +L + ND+ +A T GIEAA I+RE+
Sbjct: 1260 EDKDRKEWYLQTDGI---CLSQILGNPAVNSRLTISNDLVEIAETLGIEAARESILRELT 1316
Query: 918 NVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQAS 976
V G V+ RH+SL+AD MT G + R+G+ ++ +++ +FE +E + A+
Sbjct: 1317 IVIDGNGSYVNYRHMSLLADVMTMRGYLCGITRHGVNKVGAGALKRSSFEETVEILLDAA 1376
Query: 977 MQGREDSLRAPSARVMLGQECRQGTGLFQLRNREKKKKK 1015
+ ++ R + +M+GQ GTG ++ KK K
Sbjct: 1377 LVSEKNICRGITENIMMGQLAPMGTGNIEIMLDMKKLDK 1415
>gi|190405143|gb|EDV08410.1| RNA polymerase II core subunit [Saccharomyces cerevisiae RM11-1a]
Length = 1733
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 146/422 (34%), Positives = 217/422 (51%), Gaps = 49/422 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S L V Q + P+ P G++QD + KL+LRDTF+ + +N++Y +
Sbjct: 498 RAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLY---WVP 554
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGI-LDKKQFGSTQY 131
+ + P I KP PLW+GKQ+LS I N GI L + G+T
Sbjct: 555 DWDGVIPTPAIIKPKPLWSGKQILSVAIPN----------------GIHLQRFDEGTT-- 596
Query: 132 GLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFT 191
+ + D + I G+++ G+++KK GS+ GL+H V G + L + K+
Sbjct: 597 --LLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVN 654
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARR----LGTEAACNALGLPLDTDPEIIS 247
+L GF+ G+ D + R+ T+ I +A++ + EA N L
Sbjct: 655 FWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLL------------ 702
Query: 248 SQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKG 307
+ F + R DK + +V L + NN++ MV +G+KG
Sbjct: 703 -TAKHGMTLRESFEDNVVRFLNEARDKA-GRLAEVNLKD-------LNNVKQMVMAGSKG 753
Query: 308 STVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEF 367
S +N Q+S +GQ +EGKR A RTLP F + SP + GFV+ ++ G+ PQEF
Sbjct: 754 SFINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEF 813
Query: 368 FFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL 427
FFH M GREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S ++IQ +YGEDG+
Sbjct: 814 FFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGM 873
Query: 428 DV 429
D
Sbjct: 874 DA 875
Score = 147 bits (371), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 133/449 (29%), Positives = 210/449 (46%), Gaps = 69/449 (15%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
L S+ +PGE VGVLAAQSIGEP+TQMTLNTFHFAG VT G+PRL+EIL +A K +K
Sbjct: 1054 LRSVVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVA-KNMK 1112
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNY------ 681
TPS+ + P +++A + ++ T L+ V I + P+P
Sbjct: 1113 TPSLTVYLEPGHAADQEQAKLIRSAIEHTT----LKSVTIASEIYYDPDPRSTVIPEDEE 1168
Query: 682 --QMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQ 739
Q+ F + + P +L LE+ RAA K++ + Q ++
Sbjct: 1169 IIQLHFSLLDEEAEQSFDQQSP----------WLLRLEL---DRAAMNDKDLTMGQVGER 1215
Query: 740 MEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERM 799
++ ++D + V E+ DE+ ++ +V + + D E +E+ M
Sbjct: 1216 IKQTFKND--------------LFVIWSEDNDEKLIIRC--RVVRPKSLDAETEAEEDHM 1259
Query: 800 SEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNL 859
+ KIE N+ ++ V N +V YD+K +PS
Sbjct: 1260 LK--------------KIENTMLENITLRGVENIERVVM-MKYDRK---------VPSPT 1295
Query: 860 FEE-KESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKN 918
E KE + +L+TDG+N++ + +D ++Y N + GIEA + +EV N
Sbjct: 1296 GEYVKEPEWVLETDGVNLSEVMTVPG-IDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYN 1354
Query: 919 VFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASM 977
V A G V+ RH++L+ D MT G ++ R+G R N + + +FE +E + +A
Sbjct: 1355 VIASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGA 1414
Query: 978 QGREDSLRAPSARVMLGQECRQGTGLFQL 1006
D R S V+LGQ GTG F +
Sbjct: 1415 SAELDDCRGVSENVILGQMAPIGTGAFDV 1443
>gi|397135834|gb|AFO11412.1| RNA polymerase I, partial [Saccharomyces cerevisiae]
Length = 871
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 146/421 (34%), Positives = 217/421 (51%), Gaps = 49/421 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S L V Q + P+ P G++QD + KL+LRDTF+ + +N++Y +
Sbjct: 311 RAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLY---WVP 367
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGI-LDKKQFGSTQY 131
+ + P I KP PLW+GKQ+LS I N GI L + G+T
Sbjct: 368 DWDGVIPTPAIIKPKPLWSGKQILSVAIPN----------------GIHLQRFDEGTT-- 409
Query: 132 GLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFT 191
+ + D + I G+++ G+++KK GS+ GL+H V G + L + K+
Sbjct: 410 --LLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVN 467
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARR----LGTEAACNALGLPLDTDPEIIS 247
+L GF+ G+ D + R+ T+ I +A++ + EA N L
Sbjct: 468 FWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLL------------ 515
Query: 248 SQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKG 307
+ F + R DK + +V L + NN++ MV +G+KG
Sbjct: 516 -TAKHGMTLRESFEDNVVRFLNEARDK-AGRLAEVNLKD-------LNNVKQMVMAGSKG 566
Query: 308 STVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEF 367
S +N Q+S +GQ +EGKR A RTLP F + SP + GFV+ ++ G+ PQEF
Sbjct: 567 SFINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEF 626
Query: 368 FFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL 427
FFH M GREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S ++IQ +YGEDG+
Sbjct: 627 FFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGM 686
Query: 428 D 428
D
Sbjct: 687 D 687
>gi|4398|emb|CAA26904.1| put. RNA polymerase II largest subunit [Saccharomyces cerevisiae]
Length = 1726
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 146/422 (34%), Positives = 217/422 (51%), Gaps = 49/422 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S L V Q + P+ P G++QD + KL+LRDTF+ + +N++Y +
Sbjct: 498 RAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLY---WVP 554
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGI-LDKKQFGSTQY 131
+ + P I KP PLW+GKQ+LS I N GI L + G+T
Sbjct: 555 DWDGVIPTPAIIKPKPLWSGKQILSVAIPN----------------GIHLQRFDEGTT-- 596
Query: 132 GLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFT 191
+ + D + I G+++ G+++KK GS+ GL+H V G + L + K+
Sbjct: 597 --LLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVN 654
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARR----LGTEAACNALGLPLDTDPEIIS 247
+L GF+ G+ D + R+ T+ I +A++ + EA N L
Sbjct: 655 FWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLL------------ 702
Query: 248 SQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKG 307
+ F + R DK + +V L + NN++ MV +G+KG
Sbjct: 703 -TAKHGMTLRESFEDNVVRFLNEARDKA-GRLAEVNLKD-------LNNVKQMVMAGSKG 753
Query: 308 STVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEF 367
S +N Q+S +GQ +EGKR A RTLP F + SP + GFV+ ++ G+ PQEF
Sbjct: 754 SFINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEF 813
Query: 368 FFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL 427
FFH M GREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S ++IQ +YGEDG+
Sbjct: 814 FFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGM 873
Query: 428 DV 429
D
Sbjct: 874 DA 875
Score = 147 bits (371), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 133/449 (29%), Positives = 210/449 (46%), Gaps = 69/449 (15%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
L S+ +PGE VGVLAAQSIGEP+TQMTLNTFHFAG VT G+PRL+EIL +A K +K
Sbjct: 1054 LRSVVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVA-KNMK 1112
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNY------ 681
TPS+ + P +++A + ++ T L+ V I + P+P
Sbjct: 1113 TPSLTVYLEPGHAADQEQAKLIRSAIEHTT----LKSVTIASEIYYDPDPRSTVIPEDEE 1168
Query: 682 --QMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQ 739
Q+ F + + P +L LE+ RAA K++ + Q ++
Sbjct: 1169 IIQLHFSLLDEEAEQSFDQQSP----------WLLRLEL---DRAAMNDKDLTMGQVGER 1215
Query: 740 MEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERM 799
++ ++D + V E+ DE+ ++ +V + + D E +E+ M
Sbjct: 1216 IKQTFKND--------------LFVIWSEDNDEKLIIRC--RVVRPKSLDAETEAEEDHM 1259
Query: 800 SEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNL 859
+ KIE N+ ++ V N +V YD+K +PS
Sbjct: 1260 LK--------------KIENTMLENITLRGVENIERVVM-MKYDRK---------VPSPT 1295
Query: 860 FEE-KESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKN 918
E KE + +L+TDG+N++ + +D ++Y N + GIEA + +EV N
Sbjct: 1296 GEYVKEPEWVLETDGVNLSEVMTVPG-IDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYN 1354
Query: 919 VFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASM 977
V A G V+ RH++L+ D MT G ++ R+G R N + + +FE +E + +A
Sbjct: 1355 VIASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGA 1414
Query: 978 QGREDSLRAPSARVMLGQECRQGTGLFQL 1006
D R S V+LGQ GTG F +
Sbjct: 1415 SAELDDCRGVSENVILGQMAPIGTGAFDV 1443
>gi|324120514|dbj|BAJ78648.1| RNA polymerase II largest subunit [Nipponatelura sp. 66-1]
Length = 1718
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 146/415 (35%), Positives = 212/415 (51%), Gaps = 30/415 (7%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE + Q + P+ P+ G++QD + + K++ RD FL + + MNL+ L I
Sbjct: 485 RAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEKEQMMNLLMH-LPIW 543
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ ++ PTI KP PLWTGKQV S +I P + +IR D + G
Sbjct: 544 DGKMPQ--PTILKPKPLWTGKQVFSLII----PGNVNMIRTHSTHPDEEDDGPYKWISPG 597
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
DT V + HGEL+ GIL KK G++ L+H G E + +
Sbjct: 598 ------DTKVMVEHGELIMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINN 651
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L G ++G+ D + + + K I KA+ E A + L+ P + L++
Sbjct: 652 WLLLEGHSIGIGDTIADPQTYAEIQKAIKKAKEDVIEVIHKAHNMELEPTP---GNTLRQ 708
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
F Q++R DK + + L E NNL+ MV SG+KGS +N
Sbjct: 709 T------FENQVNRILNDARDKTGGSAKK-----SLTE---YNNLKAMVVSGSKGSNINI 754
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+ +GQ +EGKR RTLP F+ + P + GFV+ ++ G+ P EFFFH M
Sbjct: 755 SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 814
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL 427
GREGLIDTAVKT+ +GY+QR L+K +E + VHYD TVR+S LIQ+ YGEDGL
Sbjct: 815 GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGL 869
Score = 137 bits (345), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 131/449 (29%), Positives = 213/449 (47%), Gaps = 51/449 (11%)
Query: 574 PGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEI 633
PGE VG LAAQS+GEP+TQMTLNTFHFAG NVTLG+PRL+EI+ ++ K K PS+ +
Sbjct: 1056 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKP-KAPSLTV 1114
Query: 634 PFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPH---MNYQMKFCFIPA 690
FL + + A + + R+ L KV + P+P + +F
Sbjct: 1115 -FLTGV--AARDAEKAKNVLCRLEHT-TLRKVTANTAIYYDPDPQNTVIAEDQEF----V 1166
Query: 691 HMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGE 750
++Y + P++I R IE R +M D E +
Sbjct: 1167 NVYYEMPDFDPTRISPWLLR----------------------IELDRKRMTDKKLTME-Q 1203
Query: 751 GAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNTSN 810
AE A G D++ D + + ++ +D+ F +DEE ++ EDD
Sbjct: 1204 IAEKINAGFGD-DLNCIFNDDNAEKLVLRIRIMNSDDSKF---QDEEEQVDKMEDDMFLR 1259
Query: 811 IGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNLFEEKESKHLLK 870
E + D T ++ + + +H D K +++ + F+ ++ LL+
Sbjct: 1260 CIEANMLS--DMTLQGIEAISKVY--MHLPQTDSKK----RIVITETGEFKAI-AEWLLE 1310
Query: 871 TDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 930
TDG ++ + R +D + + NDI + S GIEA + + +E+ V YG+ V+ R
Sbjct: 1311 TDGTSLMKVLSERD-VDPVRTFSNDICEIFSVLGIEAVRKSVEKEMNAVLQFYGLYVNYR 1369
Query: 931 HLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSA 989
HL+L+ D MT G +A+ R+GI R + + + +FE ++ + A+ D +R S
Sbjct: 1370 HLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSE 1429
Query: 990 RVMLGQECRQGTGLFQ-LRNREKKKKKVE 1017
+++GQ R GTG F L + EK K +E
Sbjct: 1430 NIIMGQLPRMGTGAFDLLLDAEKCKHGIE 1458
>gi|72187100|gb|AAC03141.2| RNA polymerase II largest subunit [Scutigera coleoptrata]
Length = 582
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 150/423 (35%), Positives = 215/423 (50%), Gaps = 32/423 (7%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V Q + P+ P+ G++QD + + K++ RD FL + + MNL L L
Sbjct: 11 RAEIEELAIVPRQIITPQSNRPVMGIVQDTLTAVRKMTKRDVFLEKDQMMNL----LMFL 66
Query: 73 NTEIRTLP-PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQY 131
+P P I KP PLWTGKQ+ S +I P + +IR D+ +
Sbjct: 67 PIWDGKMPMPAILKPKPLWTGKQIFSLII----PGNVNMIRTHSTHPDDEDEGPYKWISP 122
Query: 132 GLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFT 191
G DT V + HG+L+SGIL KK G++ L+H V G E A + + +
Sbjct: 123 G------DTKVLVEHGDLISGILCKKTLGTSAGSLLHIVMLELGWEIAGTFYWHIQTVVN 176
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQ 251
+L G T+G+ D + + I KA++ E A L+ P + L+
Sbjct: 177 NWLLLEGHTIGIGDTIADPQTYIDIQNSIKKAKQDVIEVIEKAHNDELEPTP---GNTLR 233
Query: 252 EAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVN 311
+ F Q++R DK T + Q L E NN + MV SGAKGS +N
Sbjct: 234 QT------FENQVNRILNDARDK-TGSSAQKSLSE-------FNNFKAMVVSGAKGSKIN 279
Query: 312 TMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHC 371
Q+ +GQ +EGKR RTLP F+ + P + GFV+ ++ G+ P EFFFH
Sbjct: 280 ISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHA 339
Query: 372 MAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTK 431
M GREGLIDTAVKT+ +GY+QR L+K +E + + YD TVR+S LIQ+ YGEDGLD
Sbjct: 340 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMITYDGTVRNSVGQLIQLRYGEDGLDAGA 399
Query: 432 RQY 434
++
Sbjct: 400 VEF 402
>gi|357380836|pdb|4A3C|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
gi|359546290|pdb|4A3B|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
gi|359546308|pdb|4A3D|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
gi|359546325|pdb|4A3E|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546342|pdb|4A3F|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546359|pdb|4A3J|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
gi|359546376|pdb|4A3K|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
gi|359546392|pdb|4A3L|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546409|pdb|4A3M|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|374977879|pdb|4A3G|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
gi|374977894|pdb|4A3I|A Chain A, Rna Polymerase Ii Binary Complex With Dna
gi|380764979|pdb|4A93|A Chain A, Rna Polymerase Ii Elongation Complex Containing A Cpd
Lesion
Length = 1732
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 146/422 (34%), Positives = 217/422 (51%), Gaps = 49/422 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S L V Q + P+ P G++QD + KL+LRDTF+ + +N++Y +
Sbjct: 498 RAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLY---WVP 554
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGI-LDKKQFGSTQY 131
+ + P I KP PLW+GKQ+LS I N GI L + G+T
Sbjct: 555 DWDGVIPTPAIIKPKPLWSGKQILSVAIPN----------------GIHLQRFDEGTT-- 596
Query: 132 GLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFT 191
+ + D + I G+++ G+++KK GS+ GL+H V G + L + K+
Sbjct: 597 --LLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVN 654
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARR----LGTEAACNALGLPLDTDPEIIS 247
+L GF+ G+ D + R+ T+ I +A++ + EA N L
Sbjct: 655 FWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLL------------ 702
Query: 248 SQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKG 307
+ F + R DK + +V L + NN++ MV +G+KG
Sbjct: 703 -TAKHGMTLRESFEDNVVRFLNEARDKA-GRLAEVNLKD-------LNNVKQMVMAGSKG 753
Query: 308 STVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEF 367
S +N Q+S +GQ +EGKR A RTLP F + SP + GFV+ ++ G+ PQEF
Sbjct: 754 SFINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEF 813
Query: 368 FFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL 427
FFH M GREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S ++IQ +YGEDG+
Sbjct: 814 FFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGM 873
Query: 428 DV 429
D
Sbjct: 874 DA 875
Score = 147 bits (372), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 133/449 (29%), Positives = 210/449 (46%), Gaps = 69/449 (15%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
L S+ +PGE VGVLAAQSIGEP+TQMTLNTFHFAG VT G+PRL+EIL +A K +K
Sbjct: 1054 LRSVVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVA-KNMK 1112
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNY------ 681
TPS+ + P +++A + ++ T L+ V I + P+P
Sbjct: 1113 TPSLTVYLEPGHAADQEQAKLIRSAIEHTT----LKSVTIASEIYYDPDPRSTVIPEDEE 1168
Query: 682 --QMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQ 739
Q+ F + + P +L LE+ RAA K++ + Q ++
Sbjct: 1169 IIQLHFSLLDEEAEQSFDQQSP----------WLLRLEL---DRAAMNDKDLTMGQVGER 1215
Query: 740 MEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERM 799
++ ++D + V E+ DE+ ++ +V + + D E +E+ M
Sbjct: 1216 IKQTFKND--------------LFVIWSEDNDEKLIIRC--RVVRPKSLDAETEAEEDHM 1259
Query: 800 SEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNL 859
+ KIE N+ ++ V N +V YD+K +PS
Sbjct: 1260 LK--------------KIENTMLENITLRGVENIERVVM-MKYDRK---------VPSPT 1295
Query: 860 FEE-KESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKN 918
E KE + +L+TDG+N++ + +D ++Y N + GIEA + +EV N
Sbjct: 1296 GEYVKEPEWVLETDGVNLSEVMTVPG-IDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYN 1354
Query: 919 VFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASM 977
V A G V+ RH++L+ D MT G ++ R+G R N + + +FE +E + +A
Sbjct: 1355 VIASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGA 1414
Query: 978 QGREDSLRAPSARVMLGQECRQGTGLFQL 1006
D R S V+LGQ GTG F +
Sbjct: 1415 SAELDDCRGVSENVILGQMAPIGTGAFDV 1443
>gi|6320061|ref|NP_010141.1| Rpo21p [Saccharomyces cerevisiae S288c]
gi|2507347|sp|P04050.2|RPB1_YEAST RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit 1; Short=RNA polymerase
II subunit B1; AltName: Full=DNA-directed RNA polymerase
III largest subunit; AltName: Full=RNA polymerase II
subunit B220
gi|14278324|pdb|1I3Q|A Chain A, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
gi|14278335|pdb|1I50|A Chain A, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
gi|14278365|pdb|1I6H|A Chain A, Rna Polymerase Ii Elongation Complex
gi|20150713|pdb|1K83|A Chain A, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
gi|30749616|pdb|1NIK|A Chain A, Wild Type Rna Polymerase Ii
gi|30749737|pdb|1NT9|A Chain A, Complete 12-Subunit Rna Polymerase Ii
gi|34810553|pdb|1PQV|A Chain A, Rna Polymerase Ii-Tfiis Complex
gi|46015415|pdb|1R5U|A Chain A, Rna Polymerase Ii Tfiib Complex
gi|46015780|pdb|1SFO|A Chain A, Rna Polymerase Ii Strand Separated Elongation Complex
gi|56965911|pdb|1R9S|A Chain A, Rna Polymerase Ii Strand Separated Elongation Complex,
Matched Nucleotide
gi|56965923|pdb|1R9T|A Chain A, Rna Polymerase Ii Strand Separated Elongation Complex,
Mismatched Nucleotide
gi|56966107|pdb|1TWA|A Chain A, Rna Polymerase Ii Complexed With Atp
gi|56966121|pdb|1TWC|A Chain A, Rna Polymerase Ii Complexed With Gtp
gi|56966131|pdb|1TWF|A Chain A, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
gi|56966141|pdb|1TWG|A Chain A, Rna Polymerase Ii Complexed With Ctp
gi|56966151|pdb|1TWH|A Chain A, Rna Polymerase Ii Complexed With 2'datp
gi|58177164|pdb|1WCM|A Chain A, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
gi|61679444|pdb|1Y1W|A Chain A, Complete Rna Polymerase Ii Elongation Complex
gi|61679461|pdb|1Y77|A Chain A, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
gi|61679502|pdb|1Y1V|A Chain A, Refined Rna Polymerase Ii-tfiis Complex
gi|61679515|pdb|1Y1Y|A Chain A, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
gi|83754243|pdb|2B63|A Chain A, Complete Rna Polymerase Ii-Rna Inhibitor Complex
gi|110590854|pdb|2B8K|A Chain A, 12-Subunit Rna Polymerase Ii
gi|122920061|pdb|2E2H|A Chain A, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With Gtp
gi|122920076|pdb|2E2I|A Chain A, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dgtp
gi|122920091|pdb|2E2J|A Chain A, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
Gmpcpp
gi|122921030|pdb|2NVQ|A Chain A, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
2'dutp
gi|122921066|pdb|2NVT|A Chain A, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Gmpcpp
gi|122921082|pdb|2NVX|A Chain A, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dutp
gi|122921097|pdb|2NVY|A Chain A, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
gi|122921109|pdb|2NVZ|A Chain A, Rna Polymerase Ii Elongation Complex With Utp, Updated
112006
gi|134104674|pdb|2JA5|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
A
gi|134104689|pdb|2JA6|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
B
gi|134104710|pdb|2JA7|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104722|pdb|2JA7|M Chain M, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104734|pdb|2JA8|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
D
gi|146387184|pdb|2YU9|A Chain A, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Utp
gi|160877773|pdb|2R7Z|A Chain A, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
gi|161172227|pdb|2R92|A Chain A, Elongation Complex Of Rna Polymerase Ii With Artificial
Rdrp Scaffold
gi|161172240|pdb|2R93|A Chain A, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
gi|190613462|pdb|2VUM|A Chain A, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
gi|194368734|pdb|3CQZ|A Chain A, Crystal Structure Of 10 Subunit Rna Polymerase Ii In
Complex With The Inhibitor Alpha-Amanitin
gi|224983590|pdb|3FKI|A Chain A, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
gi|239781916|pdb|3GTG|A Chain A, Backtracked Rna Polymerase Ii Complex With 12mer Rna
gi|239781929|pdb|3GTJ|A Chain A, Backtracked Rna Polymerase Ii Complex With 13mer Rna
gi|239781942|pdb|3GTK|A Chain A, Backtracked Rna Polymerase Ii Complex With 18mer Rna
gi|239781955|pdb|3GTL|A Chain A, Backtracked Rna Polymerase Ii Complex With 13mer With G<>u
Mismatch
gi|239781968|pdb|3GTM|A Chain A, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
gi|239781982|pdb|3GTO|A Chain A, Backtracked Rna Polymerase Ii Complex With 15mer Rna
gi|239781995|pdb|3GTP|A Chain A, Backtracked Rna Polymerase Ii Complex With 24mer Rna
gi|239782008|pdb|3GTQ|A Chain A, Backtracked Rna Polymerase Ii Complex Induced By Damage
gi|240104511|pdb|3H3V|B Chain B, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
gi|254839441|pdb|3HOU|A Chain A, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839456|pdb|3HOU|M Chain M, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839471|pdb|3HOV|A Chain A, Complete Rna Polymerase Ii Elongation Complex Ii
gi|254839486|pdb|3HOW|A Chain A, Complete Rna Polymerase Ii Elongation Complex Iii With A
T-U Mismatch And A Frayed Rna 3'-Uridine
gi|254839501|pdb|3HOX|A Chain A, Complete Rna Polymerase Ii Elongation Complex V
gi|254839516|pdb|3HOY|A Chain A, Complete Rna Polymerase Ii Elongation Complex Vi
gi|254839531|pdb|3HOZ|A Chain A, Complete Rna Polymerase Ii Elongation Complex Iv With A
T-U Mismatch And A Frayed Rna 3'-Guanine
gi|257471946|pdb|3I4M|A Chain A, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex D
gi|257471961|pdb|3I4N|A Chain A, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex E
gi|266618765|pdb|3K1F|A Chain A, Crystal Structure Of Rna Polymerase Ii In Complex With
Tfiib
gi|269914552|pdb|3K7A|A Chain A, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
gi|295982475|pdb|3M3Y|A Chain A, Rna Polymerase Ii Elongation Complex C
gi|295982488|pdb|3M4O|A Chain A, Rna Polymerase Ii Elongation Complex B
gi|325053963|pdb|3PO2|A Chain A, Arrested Rna Polymerase Ii Elongation Complex
gi|325053978|pdb|3PO3|A Chain A, Arrested Rna Polymerase Ii Reactivation Intermediate
gi|326634538|pdb|3QT1|A Chain A, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
gi|343197456|pdb|3RZD|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
gi|343197468|pdb|3RZO|A Chain A, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
gi|343197480|pdb|3S14|A Chain A, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
gi|343197492|pdb|3S15|A Chain A, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
gi|343197504|pdb|3S16|A Chain A, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
gi|343197516|pdb|3S17|A Chain A, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
gi|343197528|pdb|3S1M|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 1)
gi|343197540|pdb|3S1N|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 2)
gi|343197552|pdb|3S1Q|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Atp
gi|343197564|pdb|3S1R|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Gtp
gi|343197576|pdb|3S2D|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
Containing A 5br- U
gi|343781197|pdb|3S2H|A Chain A, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
Containing A 2[prime]-Iodo Atp
gi|414145446|pdb|4BBR|A Chain A, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145459|pdb|4BBS|A Chain A, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
gi|1419221|emb|CAA65619.1| RPB1 [Saccharomyces cerevisiae]
gi|1431217|emb|CAA98713.1| RPO21 [Saccharomyces cerevisiae]
gi|151941861|gb|EDN60217.1| RNA polymerase [Saccharomyces cerevisiae YJM789]
gi|285810894|tpg|DAA11718.1| TPA: Rpo21p [Saccharomyces cerevisiae S288c]
gi|349576938|dbj|GAA22107.1| K7_Rpo21p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392300684|gb|EIW11775.1| Rpo21p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 1733
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 146/422 (34%), Positives = 217/422 (51%), Gaps = 49/422 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S L V Q + P+ P G++QD + KL+LRDTF+ + +N++Y +
Sbjct: 498 RAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLY---WVP 554
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGI-LDKKQFGSTQY 131
+ + P I KP PLW+GKQ+LS I N GI L + G+T
Sbjct: 555 DWDGVIPTPAIIKPKPLWSGKQILSVAIPN----------------GIHLQRFDEGTT-- 596
Query: 132 GLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFT 191
+ + D + I G+++ G+++KK GS+ GL+H V G + L + K+
Sbjct: 597 --LLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVN 654
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARR----LGTEAACNALGLPLDTDPEIIS 247
+L GF+ G+ D + R+ T+ I +A++ + EA N L
Sbjct: 655 FWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLL------------ 702
Query: 248 SQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKG 307
+ F + R DK + +V L + NN++ MV +G+KG
Sbjct: 703 -TAKHGMTLRESFEDNVVRFLNEARDKA-GRLAEVNLKD-------LNNVKQMVMAGSKG 753
Query: 308 STVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEF 367
S +N Q+S +GQ +EGKR A RTLP F + SP + GFV+ ++ G+ PQEF
Sbjct: 754 SFINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEF 813
Query: 368 FFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL 427
FFH M GREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S ++IQ +YGEDG+
Sbjct: 814 FFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGM 873
Query: 428 DV 429
D
Sbjct: 874 DA 875
Score = 147 bits (371), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 133/449 (29%), Positives = 210/449 (46%), Gaps = 69/449 (15%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
L S+ +PGE VGVLAAQSIGEP+TQMTLNTFHFAG VT G+PRL+EIL +A K +K
Sbjct: 1054 LRSVVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVA-KNMK 1112
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNY------ 681
TPS+ + P +++A + ++ T L+ V I + P+P
Sbjct: 1113 TPSLTVYLEPGHAADQEQAKLIRSAIEHTT----LKSVTIASEIYYDPDPRSTVIPEDEE 1168
Query: 682 --QMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQ 739
Q+ F + + P +L LE+ RAA K++ + Q ++
Sbjct: 1169 IIQLHFSLLDEEAEQSFDQQSP----------WLLRLEL---DRAAMNDKDLTMGQVGER 1215
Query: 740 MEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERM 799
++ ++D + V E+ DE+ ++ +V + + D E +E+ M
Sbjct: 1216 IKQTFKND--------------LFVIWSEDNDEKLIIRC--RVVRPKSLDAETEAEEDHM 1259
Query: 800 SEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNL 859
+ KIE N+ ++ V N +V YD+K +PS
Sbjct: 1260 LK--------------KIENTMLENITLRGVENIERVVM-MKYDRK---------VPSPT 1295
Query: 860 FEE-KESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKN 918
E KE + +L+TDG+N++ + +D ++Y N + GIEA + +EV N
Sbjct: 1296 GEYVKEPEWVLETDGVNLSEVMTVPG-IDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYN 1354
Query: 919 VFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASM 977
V A G V+ RH++L+ D MT G ++ R+G R N + + +FE +E + +A
Sbjct: 1355 VIASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGA 1414
Query: 978 QGREDSLRAPSARVMLGQECRQGTGLFQL 1006
D R S V+LGQ GTG F +
Sbjct: 1415 SAELDDCRGVSENVILGQMAPIGTGAFDV 1443
>gi|448524734|ref|XP_003869005.1| Rpo21 protein [Candida orthopsilosis Co 90-125]
gi|380353358|emb|CCG22868.1| Rpo21 protein [Candida orthopsilosis]
Length = 1732
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 152/419 (36%), Positives = 224/419 (53%), Gaps = 39/419 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
++E S + V Q + P+ P+ G++QD + K++LRD F+ + MN+ Y I
Sbjct: 498 RSELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIEYDQVMNMCY---WIP 554
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N + PP I KP PLW+GKQ+LS I PK I R G D
Sbjct: 555 NWDGVIPPPAIIKPKPLWSGKQILSMAI----PKGIHIQR----FDGGRD---------- 596
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ + DT + I GE++ G++DKK G+T GL+H V G + L S + K+
Sbjct: 597 -LLSAKDTGMLIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPQVCAQLFSSIQKVVNF 655
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + + TK I +A++ E +A LD +P + L+E
Sbjct: 656 WLLHNGFSIGIGDTIADASTMKDITKTIQEAKQKVQEIILDAQHNKLDPEPGMT---LRE 712
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
+ F + R D + ++ L + NN++ MV SG+KGS +N
Sbjct: 713 S------FEHNVSRVLNQARDTAGRSA-EMSLKD-------LNNVKQMVTSGSKGSFINI 758
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EGKR + R+LP F + SP + GFV+ ++ G+ PQEFFFH M
Sbjct: 759 SQMSACVGQQIVEGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAM 818
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTK 431
AGREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S +IQ +YGEDG+D T+
Sbjct: 819 AGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFIYGEDGVDATQ 877
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 68/98 (69%), Gaps = 1/98 (1%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
S+ +PGE VGV+AAQSIGEP+TQMTLNTFH+AG NVTLG+PRL+EIL +A K IKTP
Sbjct: 1057 SIVHPGEMVGVVAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVA-KNIKTP 1115
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKI 667
++ + P++ + A + S+ T+ +V +I
Sbjct: 1116 ALTVYLDPEVASDIELAKIVQSSIEHTTLKNVTSSTEI 1153
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 84/165 (50%), Gaps = 3/165 (1%)
Query: 856 PSNLFEEKESKH-LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIR 914
P E K+ K +L+TDG+N+ + + D + Y ND + S GIEA + +
Sbjct: 1294 PDETGEFKQGKEWVLETDGVNLADVMAVPGV-DSTRTYSNDFIEILSVLGIEATRSALYK 1352
Query: 915 EVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIR 973
E+ NV A G V+ RH++L+ D MT G +A+ R+GI R + + + +FE +E +
Sbjct: 1353 EILNVIAFDGSYVNYRHMALLVDVMTSRGHLMAITRHGINRSDTGALMRCSFEETVEILL 1412
Query: 974 QASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNREKKKKKVEA 1018
A+ D + S VMLGQ GTG F + +K ++ A
Sbjct: 1413 DAAAAAELDDCKGISENVMLGQMAPLGTGAFDVMVDDKMLQQAPA 1457
>gi|401825605|ref|XP_003886897.1| RNA polymerase II large subunit Rpb1 [Encephalitozoon hellem ATCC
50504]
gi|392998054|gb|AFM97916.1| RNA polymerase II large subunit Rpb1 [Encephalitozoon hellem ATCC
50504]
Length = 1557
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 148/446 (33%), Positives = 220/446 (49%), Gaps = 62/446 (13%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S+ KAE L VS Q + P+ P+ G++QD + +LRDTFL E M L+Y
Sbjct: 463 SYTSKAELEELALVSKQIISPQSNKPVMGIVQDTLTGLRLFTLRDTFLNEREVMLLLYA- 521
Query: 69 LCILNTEIRTLPP-----------------------TIWKPMPLWTGKQVLSTVIINLTP 105
+N E PP I KPM LWTGKQ+LS V+ N+
Sbjct: 522 ---VNIEFCDTPPGSTGYIGFRRTKDYDIMKVLKRPAIAKPMRLWTGKQILSFVLPNMN- 577
Query: 106 KDKVIIRHGELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYG 165
+G + ++ + DT V I+ G + SG++DKK G+TQ G
Sbjct: 578 -----------YTGFSSEHNDEDSE-----NINDTKVIIQDGYIHSGVIDKKAAGATQGG 621
Query: 166 LVHAVWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKAR 224
LVH +++ G + A + + ++ V++ + F++G+ D + D K K++ +A
Sbjct: 622 LVHIIFNDFGPKRAAQFFNGVQRMINVFMTGIHTFSIGIGDTIA----DAKTVKMVEEAI 677
Query: 225 RLGTEAACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCL 284
R E II + Q +P + ++S L+ V N V
Sbjct: 678 RKAKEEVS-----------VIIENARQNRLERLPGM--TMKESFESHLNLVLNRARDVSG 724
Query: 285 PEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPY 344
NN++ MV +G+KGS +N Q++ +GQ +EGKR S RTLP F+
Sbjct: 725 TSAQRSLSGNNNMKTMVLAGSKGSFINISQVTACVGQQNVEGKRIPFGFSHRTLPHFVKD 784
Query: 345 EVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTV 404
+ + R+ GFV+ ++TG+ P+EFFFH M GREGLIDTA+KT+ +GY+QR LVK LE V
Sbjct: 785 DYTGRSRGFVENSYLTGLDPEEFFFHAMGGREGLIDTAIKTAETGYIQRRLVKALEDAIV 844
Query: 405 HYDMTVRDSDLSLIQVLYGEDGLDVT 430
D +VR + + QV YGEDG D T
Sbjct: 845 RQDESVRSGNGLVYQVKYGEDGFDAT 870
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 62/101 (61%), Gaps = 2/101 (1%)
Query: 561 DMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILM 620
+M K L + P E VG LAAQS+GEP+TQMTLNTFH AG VT+G+PRL+EI
Sbjct: 1032 EMTKAKILKARITPNEMVGTLAAQSVGEPATQMTLNTFHLAGVSS-TVTMGVPRLKEIFN 1090
Query: 621 MATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADV 661
+ TK +KTPSM+I D K + A + + + + D+
Sbjct: 1091 V-TKNLKTPSMKIYLDKDHCKTIESAKAIQNEIECLCVKDL 1130
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 61/110 (55%), Gaps = 1/110 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
ND+ +A T GIEAA I+RE+ V G V+ RH+SL+AD MT G + R+G+
Sbjct: 1293 NDLIEIAETLGIEAARESILRELAIVIDGNGSYVNYRHMSLLADVMTMRGYLCGITRHGV 1352
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTG 1002
+ +++ +FE +E + A++ ++ R + +M+GQ GTG
Sbjct: 1353 NKAGAGALKRSSFEETVEILLDAALVSEKNLCRGITENIMMGQLAPMGTG 1402
>gi|449550549|gb|EMD41513.1| hypothetical protein CERSUDRAFT_110068 [Ceriporiopsis subvermispora
B]
Length = 1749
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 149/436 (34%), Positives = 234/436 (53%), Gaps = 48/436 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S + V Q + P+ P+ G++QD + K +LRDTFL ++ N++ L +
Sbjct: 509 RAELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLDWSQVQNIL---LWVP 565
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + P + KP PLWTGKQ+LS VI P+ I R + S
Sbjct: 566 DWDGSVPTPAVIKPKPLWTGKQILSMVI----PRGINIHRSPDPKS-------------- 607
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ V+D + I +GE++ GI++KK G++Q GL+H V+ G E +L + +
Sbjct: 608 -PNPVFDDGMMIENGEIIFGIVEKKTVGASQGGLIHVVFREKGPEACRTLFGGIQTVVNY 666
Query: 193 YLQRVGFTLGVRDILV-RQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQ 251
+L GF++G+ D + R D + +I + + + + +A L P + ++
Sbjct: 667 WLFHNGFSIGIGDTIADRPTMDHIKEQIQTRKQNVA-QTIDDATHDRLKAAPGMT---IR 722
Query: 252 EAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVN 311
E+ F ++++R+ D+ + Q L E NN++ MV +G+KGS +N
Sbjct: 723 ES------FESKVERELNLARDQ-SGQYAQKSLKED-------NNVKQMVVAGSKGSFIN 768
Query: 312 TMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHC 371
Q+S +GQ +EG+R R+LP F + SP + GFV+ ++ G+ P EFFFH
Sbjct: 769 ISQMSVCVGQQIVEGRRIPFGFRHRSLPHFTKDDFSPESRGFVENSYLRGLTPHEFFFHA 828
Query: 372 MAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD--V 429
MAGREGLIDTAVKT+ +GY+QR LVK LE + V YD TVR+S LIQ +YGEDG+D
Sbjct: 829 MAGREGLIDTAVKTAETGYIQRRLVKALEDVMVCYDGTVRNSLGDLIQFVYGEDGMDGAF 888
Query: 430 TKRQY-----LTDKQF 440
+RQ+ L D++F
Sbjct: 889 IERQHIETYALNDREF 904
Score = 97.4 bits (241), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/107 (48%), Positives = 70/107 (65%), Gaps = 3/107 (2%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
SLA+PGE G LAAQSIGEP+TQMTLNTFH+AG NVTLG+PRL+EI+ +AT IKTP
Sbjct: 1069 SLAHPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATN-IKTP 1127
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPE 676
S+ + P + K A + + + ++ V V+I W + P+
Sbjct: 1128 SLSVYLEPQIAKDAVLAKNVQQELAFTSLRTVTAAVEI--WYDPDPQ 1172
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 81/145 (55%), Gaps = 2/145 (1%)
Query: 863 KESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 922
+E + +L+TDG+N+ + + D + Y N + + GIEAA I++E++ V
Sbjct: 1317 QEKEWILETDGVNLKAVMCIDGV-DFKRTYSNSCVEIFNVLGIEAARAAIMKELRGVIEF 1375
Query: 923 YGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGRE 981
G V+ RHL+L+ D MTH G+ +A+ R+GI R + + + +FE +E + +A+ G +
Sbjct: 1376 DGSYVNYRHLALLCDLMTHRGSLMAITRHGINRADTGALMRCSFEETVEILMEAAAVGEK 1435
Query: 982 DSLRAPSARVMLGQECRQGTGLFQL 1006
D + VM GQ GTG F++
Sbjct: 1436 DDCHGIAENVMFGQMAPMGTGAFEV 1460
>gi|226876233|gb|ACO89437.1| RNA polymerase II largest subunit, partial [Chaetothyriales sp.
TRN508]
Length = 983
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 142/419 (33%), Positives = 212/419 (50%), Gaps = 43/419 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE + L V + P+ SPL G++QD + K+ RD FL+R + MN++ L +
Sbjct: 408 RAELANLCMVPLNIVSPQRNSPLMGIVQDTLCGIYKICRRDIFLSRDQVMNIM---LWVP 464
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + P I KP P WTGKQ++S + L P L+ ++ +
Sbjct: 465 DWDGVIPQPAILKPTPRWTGKQIIS---MALPPG--------------LNLERLDAKGED 507
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ DT V + GE++ GI KK G++ G++H +++ G E A+ + +
Sbjct: 508 PLSPSVDTGVLVLEGEVMFGIFSKKLVGTSAGGVIHTIYNEFGWEKAMQFFNGAQTIVNY 567
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L VGF++G+ D + + K + ++ + E A LD P + Q E
Sbjct: 568 WLLHVGFSVGIGDTVPDPDTVNKIQEAVDSKKAEVAEITAKAYNDDLDASPGMTVRQTFE 627
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPA---NNLQFMVESGAKGST 309
+ KV N +NQ G NN M SG+KGST
Sbjct: 628 S--------------------KVMNALNQARDLSGAATEQSLKDLNNAIQMARSGSKGST 667
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q++ ++GQ +EGKR R+LP F + S + GFV+ ++ G+ P EFFF
Sbjct: 668 INIAQMTAIVGQQAVEGKRIPFGFKYRSLPHFAKDDYSAHSRGFVENSYLRGLTPSEFFF 727
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
H MAGREGLIDTAVKT+ +GY+QR LVK LE +TV YD TVRDS +++Q LYGEDGLD
Sbjct: 728 HAMAGREGLIDTAVKTAETGYIQRRLVKALEEVTVKYDSTVRDSRGNVVQFLYGEDGLD 786
>gi|397135868|gb|AFO11429.1| RNA polymerase I, partial [Clavispora lusitaniae]
Length = 872
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 151/422 (35%), Positives = 223/422 (52%), Gaps = 39/422 (9%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S +AE S + V Q + P+ P+ G++QD + K++LRD F+ + MN++Y
Sbjct: 307 SQETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIEYEQVMNMLY-- 364
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGS 128
I N + PP I KP PLW+GKQ+LS I PK G L D S
Sbjct: 365 -WIPNWDGVIPPPAIIKPKPLWSGKQILSMAI----PK-------GIHLQRFDDGNDMLS 412
Query: 129 TQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAK 188
+ D + I GE++ G++DKK G+T GL+H V G++ L S + K
Sbjct: 413 PK--------DKGILIVDGEIIFGVVDKKTVGATGGGLIHTVMREKGSQVCAQLFSSIQK 464
Query: 189 LFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISS 248
+ +L GF++G+ D + ++ R T I +A++ E +A L+ +P +
Sbjct: 465 VVNYWLLHNGFSIGIGDTIADKDTMRDVTTTIQEAKQKVQEIIMDAQQNRLEPEPGMT-- 522
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGS 308
L+E++ + + +V N + NN++ MV SG+KGS
Sbjct: 523 -LRESF--------------EHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVTSGSKGS 567
Query: 309 TVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFF 368
+N Q+S +GQ +EGKR + RTLP F + SP + GFV+ ++ G+ PQEFF
Sbjct: 568 FINISQMSACVGQQIVEGKRIPFGFADRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFF 627
Query: 369 FHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
FH MAGREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S +IQ +YGEDG+D
Sbjct: 628 FHAMAGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFVYGEDGID 687
Query: 429 VT 430
T
Sbjct: 688 GT 689
>gi|336378579|gb|EGO19737.1| DNA-directed RNA polymerase II, subunit 1 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1744
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 152/435 (34%), Positives = 229/435 (52%), Gaps = 46/435 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S + V Q + P+ P+ G++QD + K +LRDTFL + N++ L +
Sbjct: 509 RAELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLDWNQVQNIL---LWVP 565
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + P+I KP PLWTGKQ+LS VI P+ I R E S
Sbjct: 566 DWDGNVPIPSIIKPKPLWTGKQILSMVI----PRGINIHRAPEPKSS------------- 608
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ V+D + I +GE++ GI++KK G++Q GLVH V+ G + + + + +
Sbjct: 609 --NPVFDDGMLIENGEIVFGIVEKKTVGASQGGLVHVVFREKGPDATRQIFTGIQMVVNF 666
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + + T+ I+ + +A L P + ++E
Sbjct: 667 WLFHNGFSIGIGDTIADTKTMSYITQQISSQKVKVAGIIDDATHDRLKAAPGMT---IRE 723
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
+ F +++ R+ D Q L E NN++ MV +G+KGS +N
Sbjct: 724 S------FESKVQRELNLARDDC-GQYAQKSLKED-------NNVKQMVVAGSKGSFINI 769
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EG+R RTLP F + SP A GFV+ ++ G+ PQEFFFH M
Sbjct: 770 SQMSVCVGQQSVEGRRIPFGFRHRTLPHFTKDDFSPEARGFVENSYLRGLTPQEFFFHAM 829
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD--VT 430
AGREGLIDTAVKT+ +GY+QR LVK LE + V YD TVR+S L+Q +YGEDG+D
Sbjct: 830 AGREGLIDTAVKTAETGYIQRRLVKALEDVMVCYDGTVRNSLGDLVQFVYGEDGMDGAFI 889
Query: 431 KRQ-----YLTDKQF 440
+RQ L+DK+F
Sbjct: 890 ERQKIDTFALSDKEF 904
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/108 (49%), Positives = 69/108 (63%), Gaps = 3/108 (2%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
SL NPGE G LAAQSIGEP+TQMTLNTFH+AG NVTLG+PRL+EI+ +AT IKTP
Sbjct: 1069 SLVNPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATN-IKTP 1127
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEP 677
S+ + D+ E+ + LAK++ + L V + P+P
Sbjct: 1128 SLSVYLESDI--AEEVSGMLAKNVQQELAYTSLRTVTAAVEIWYDPDP 1173
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 77/140 (55%), Gaps = 2/140 (1%)
Query: 868 LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 927
+L+TDG+N+ + + D + Y N + + GIEAA I++E++ V V
Sbjct: 1323 VLETDGVNLKTVMCIDGV-DFRRTYSNSCVEVFNVLGIEAARAAIMKELRGVIEFESSYV 1381
Query: 928 DPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRA 986
+ RHL+L+ D MTH GT +A+ R+GI R + + + +FE +E + +A+ G +D
Sbjct: 1382 NYRHLALLCDLMTHRGTLMAITRHGINRADTGALMRCSFEETVEILMEAAAVGEKDDCHG 1441
Query: 987 PSARVMLGQECRQGTGLFQL 1006
+ VM GQ GTG F++
Sbjct: 1442 IAENVMFGQMAPMGTGAFEV 1461
>gi|347601522|gb|AEP16007.1| DNA-dependent RNA polymerase II largest subunit [Emiliania huxleyi
virus 208]
gi|357972677|gb|AET97950.1| RNA polymerase subunit beta [Emiliania huxleyi virus 201]
Length = 1468
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 192/674 (28%), Positives = 310/674 (45%), Gaps = 93/674 (13%)
Query: 14 AEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCILN 73
+E S LM ++ + ++ P G++QD ++ ++ FLTRA+ + N
Sbjct: 521 SEVSTLMAINRNIISAQNNKPCFGIVQDSLVGAWLMTDPSVFLTRADMLRFRIYVKFANN 580
Query: 74 TEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYGL 133
PP I KP LWTG Q++S V ++ + G + SGI
Sbjct: 581 GTTMLPPPAISKPKELWTGSQLISFVF-----PYTLMYQRGSI-SGITS----------- 623
Query: 134 VHAVWDTH-VTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGA-EHAISLLSCLAKLFT 191
+DT + I++G++L G L K G+T + + HG + A+ LS + ++
Sbjct: 624 ----YDTKDLLIQNGQILFGRLSKSTLGATAGAISDIIHHEHGGPKKAVEFLSDVQRVVN 679
Query: 192 VY-LQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQL 250
+ L + F++G D + ++ + + I A ++ I++S++
Sbjct: 680 QWLLYKNSFSIGASDCVTNEQSHNEVVECIKSA---------------VNNSKMILTSKV 724
Query: 251 QEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTV 310
++ + + R ++ K I P+ N++ V +G+KGS +
Sbjct: 725 PKSLKEMAE--GATTRILSDVIMKTATIIKNNAPPD--------NSIITCVTAGSKGSPL 774
Query: 311 NTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYE-VSPRAGGFVDGRFMTGIQPQEFFF 369
N Q+ +GQ + G+R SGRTLP F E + A G++ FM G+QP EFFF
Sbjct: 775 NIAQVCGQVGQQIVGGERILNGTSGRTLPCFKHGEHATVNANGYIQNSFMLGLQPTEFFF 834
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
M+GREGL+DTAVKT+ SGY+QRCLVK E +YD T+R++ ++Q Y D D
Sbjct: 835 SAMSGREGLVDTAVKTANSGYIQRCLVKASEDNMCNYDGTIRNAQGMVVQFKYA-DNFDP 893
Query: 430 TKRQYLTDKQFSFLEDNIKWICS---YKVILNLLK---------KHPLSLALLLLLT--- 474
K + + + + IK Y VI++L + PL +LL +
Sbjct: 894 CKVERIKVEPLLMTSEEIKRNAGPLEYDVIMSLRENAQKVLSQSNKPLMDVVLLPINISR 953
Query: 475 -FKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFG 533
F+S+ N + PH E + + KK C + Q G
Sbjct: 954 MFESATWNNDV--PHEFD-----EESLLTAVSEVVHEIVKKHPVCKYVVPLYIQWCMRIG 1006
Query: 534 SISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQM 593
+I E+L +V F + ++ L S+ G+ VG AA SIGEPSTQM
Sbjct: 1007 NIPEHL---------------NVKAFLCEVKHRCLSSVVAGGDAVGNTAALSIGEPSTQM 1051
Query: 594 TLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSM 653
TLN+FH AG G VT+GIPRL+E+ M +K ++TP + F P+ E KA +A +
Sbjct: 1052 TLNSFHTAGTGHAGVTMGIPRLKEV-MGYSKQLRTPQTTLEFSDKTPE-ELKA--IAAKL 1107
Query: 654 TRITMADVLEKVKI 667
TR+T++ V E + +
Sbjct: 1108 TRLTLSHVTENMNV 1121
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 69/126 (54%), Gaps = 6/126 (4%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D K+ NDIH + +T GIEAA VI E+ + G +DPRH+ L A MT G
Sbjct: 1291 VDWTKVMTNDIHNVVNTLGIEAALTVIFNELHSTLTADGSYIDPRHIELTASTMTLRGYV 1350
Query: 946 VAMNRNG---IRLNPSFIQKMTFEMPLEKIRQASMQGR-EDSLRAPSARVMLGQECRQGT 1001
+ +NR+G I+ P + + +FE E ++ A++ ED + SA +M+GQ GT
Sbjct: 1351 MPLNRHGLNNIKTGP--LTRSSFEETSEVLKDAAIFAESEDVSGSVSASIMMGQLSAIGT 1408
Query: 1002 GLFQLR 1007
G F +R
Sbjct: 1409 GRFDVR 1414
>gi|336364350|gb|EGN92710.1| hypothetical protein SERLA73DRAFT_98944 [Serpula lacrymans var.
lacrymans S7.3]
Length = 1741
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 152/435 (34%), Positives = 229/435 (52%), Gaps = 46/435 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S + V Q + P+ P+ G++QD + K +LRDTFL + N++ L +
Sbjct: 506 RAELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLDWNQVQNIL---LWVP 562
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + P+I KP PLWTGKQ+LS VI P+ I R E S
Sbjct: 563 DWDGNVPIPSIIKPKPLWTGKQILSMVI----PRGINIHRAPEPKSS------------- 605
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ V+D + I +GE++ GI++KK G++Q GLVH V+ G + + + + +
Sbjct: 606 --NPVFDDGMLIENGEIVFGIVEKKTVGASQGGLVHVVFREKGPDATRQIFTGIQMVVNF 663
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + + T+ I+ + +A L P + ++E
Sbjct: 664 WLFHNGFSIGIGDTIADTKTMSYITQQISSQKVKVAGIIDDATHDRLKAAPGMT---IRE 720
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
+ F +++ R+ D Q L E NN++ MV +G+KGS +N
Sbjct: 721 S------FESKVQRELNLARDDC-GQYAQKSLKED-------NNVKQMVVAGSKGSFINI 766
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EG+R RTLP F + SP A GFV+ ++ G+ PQEFFFH M
Sbjct: 767 SQMSVCVGQQSVEGRRIPFGFRHRTLPHFTKDDFSPEARGFVENSYLRGLTPQEFFFHAM 826
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD--VT 430
AGREGLIDTAVKT+ +GY+QR LVK LE + V YD TVR+S L+Q +YGEDG+D
Sbjct: 827 AGREGLIDTAVKTAETGYIQRRLVKALEDVMVCYDGTVRNSLGDLVQFVYGEDGMDGAFI 886
Query: 431 KRQ-----YLTDKQF 440
+RQ L+DK+F
Sbjct: 887 ERQKIDTFALSDKEF 901
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/108 (49%), Positives = 69/108 (63%), Gaps = 3/108 (2%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
SL NPGE G LAAQSIGEP+TQMTLNTFH+AG NVTLG+PRL+EI+ +AT IKTP
Sbjct: 1066 SLVNPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATN-IKTP 1124
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEP 677
S+ + D+ E+ + LAK++ + L V + P+P
Sbjct: 1125 SLSVYLESDI--AEEVSGMLAKNVQQELAYTSLRTVTAAVEIWYDPDP 1170
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 77/140 (55%), Gaps = 2/140 (1%)
Query: 868 LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 927
+L+TDG+N+ + + D + Y N + + GIEAA I++E++ V V
Sbjct: 1320 VLETDGVNLKTVMCIDGV-DFRRTYSNSCVEVFNVLGIEAARAAIMKELRGVIEFESSYV 1378
Query: 928 DPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRA 986
+ RHL+L+ D MTH GT +A+ R+GI R + + + +FE +E + +A+ G +D
Sbjct: 1379 NYRHLALLCDLMTHRGTLMAITRHGINRADTGALMRCSFEETVEILMEAAAVGEKDDCHG 1438
Query: 987 PSARVMLGQECRQGTGLFQL 1006
+ VM GQ GTG F++
Sbjct: 1439 IAENVMFGQMAPMGTGAFEV 1458
>gi|397135856|gb|AFO11423.1| RNA polymerase I, partial [Saturnispora dispora]
Length = 870
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 140/425 (32%), Positives = 217/425 (51%), Gaps = 47/425 (11%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S+ +AE S + V Q + P+ P+ G++QD + K++LRD F+ + MN+ Y
Sbjct: 307 SYETRAELSQIAAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDNFIEYDQVMNMCY-- 364
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR-HGELLSGILDKKQFG 127
I + PP I KP PLW+GKQ++S I PK + R G LLS
Sbjct: 365 -WIPEWDGVIPPPCILKPKPLWSGKQMMSLCI----PKGIFLQRLDGSLLSPK------- 412
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
D+ + I +GE++ G+++K GS+ GL+H G + +
Sbjct: 413 -----------DSGMLIMNGEIMFGVVNKATVGSSAGGLIHTTMREKGPTICARMFGNIQ 461
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIIS 247
K+ +L GF++G+ D + E + T+ I +A+ E +
Sbjct: 462 KVINYWLLHNGFSIGIGDAIADPETMKTITETIKEAK-------------------EKVQ 502
Query: 248 SQLQEAYASI--PQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGA 305
+++A ++ P+ + ++ + K+ N +NN++ MV +G+
Sbjct: 503 LVIKDAQQNLLEPEPGMTVRESFEQKVSKILNEARDSAGKSAETSLKNSNNVKQMVTAGS 562
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS +N Q+S +GQ +EGKR + R+LP F + S + GFV+ ++ G+ PQ
Sbjct: 563 KGSYINISQMSACVGQQIVEGKRINFGFADRSLPHFTKDDYSAESKGFVENSYLRGLTPQ 622
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EFFFH MAGREGLIDTAVKT+ +GY+QR L+K LE + VHYD T R+S +IQ LYGED
Sbjct: 623 EFFFHAMAGREGLIDTAVKTAETGYIQRRLLKALEDIMVHYDGTTRNSLGDIIQFLYGED 682
Query: 426 GLDVT 430
GLD T
Sbjct: 683 GLDGT 687
>gi|156083004|ref|XP_001608986.1| DNA-directed RNA polymerase II largest subunit [Babesia bovis T2Bo]
gi|154796236|gb|EDO05418.1| DNA-directed RNA polymerase II largest subunit, putative [Babesia
bovis]
Length = 1746
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 143/450 (31%), Positives = 222/450 (49%), Gaps = 58/450 (12%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
+H +AE LM V Q + P+ P+ G++QD ++ +K + RD FLT+ MNL+
Sbjct: 495 THETRAEVKHLMLVPKQIVSPQGNRPVMGIVQDSLLGISKFTRRDCFLTKDMLMNLL--- 551
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVI----------INLTPKDKVIIRHGELLS 118
+ I + + P I+ P+PLWTGKQV+S ++ INL V + +
Sbjct: 552 MWIPYWDGKLPQPCIFHPVPLWTGKQVVSIMLTFDQMNSLTCINLMRNSAVALENDNPYC 611
Query: 119 GILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEH 178
D K V I E LSGI+ KK G++ L+H +W G +
Sbjct: 612 SANDSK-----------------VIISKNEHLSGIICKKTVGTSSGSLIHVLWHEAGPDR 654
Query: 179 AISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKAR----RLGTEAACNA 234
L+ L K+ +L GFT+ DI+ + + +I+ +++ RL A
Sbjct: 655 CKDFLTTLQKVVNNWLVYNGFTVSCSDIMASESTLTQVAEILERSKKEVQRLVGLAQRGK 714
Query: 235 LGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPA 294
L + Q + F A+++++ ++ + I L E
Sbjct: 715 L-------------KCQPGKSLFESFEARVNKELNEAREQ-SGTIAAKSLDE-------R 753
Query: 295 NNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFV 354
NN+ MV SG+KGST+N QI +GQ +EGKR R+LP F+ ++ P + GFV
Sbjct: 754 NNILAMVNSGSKGSTINISQIIACVGQQNVEGKRVPFGFRDRSLPHFIKHDYGPESRGFV 813
Query: 355 DGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSD 414
+++G+ PQE FFH M GREG+IDTA KTS +GY+QR L+K +E + VHYD TVR
Sbjct: 814 SNSYLSGLTPQEMFFHAMGGREGVIDTACKTSETGYVQRRLMKAMEDIMVHYDKTVRSGG 873
Query: 415 LSLIQVLYGEDGLDVTKRQYLTDKQFSFLE 444
++Q LYGEDG+ +Y+ D+ ++
Sbjct: 874 GDILQFLYGEDGMGA---EYVEDQTLDLMK 900
Score = 90.9 bits (224), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/71 (63%), Positives = 55/71 (77%), Gaps = 4/71 (5%)
Query: 563 IFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMA 622
IFYK S+ +PGE VG +AAQSIGEP+TQMTLNTFHFAG NVTLG+PRL+E L+
Sbjct: 1070 IFYK---SICHPGECVGAIAAQSIGEPATQMTLNTFHFAGVSSKNVTLGLPRLKE-LINV 1125
Query: 623 TKAIKTPSMEI 633
+ +KTPS+ I
Sbjct: 1126 VRNVKTPSLTI 1136
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 80/146 (54%), Gaps = 2/146 (1%)
Query: 862 EKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 921
E+ S+ +L TDG N+ + +D K NDI + GIEAA ++RE++ V +
Sbjct: 1317 ERVSQWVLDTDGCNLEDVLSI-PCVDAQKSISNDISEIFHVLGIEAARMALLRELRAVIS 1375
Query: 922 VYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGR 980
G V+ RHLSL+ D MT G +++ R+G+ R + + K +FE LE + A++
Sbjct: 1376 FDGSYVNYRHLSLLCDVMTQKGHIMSITRHGLNRADRGPLVKCSFEETLEALVDAAVFAE 1435
Query: 981 EDSLRAPSARVMLGQECRQGTGLFQL 1006
D L+ + VMLGQ C GTG F +
Sbjct: 1436 LDLLKGVTENVMLGQLCPMGTGSFDI 1461
>gi|397135826|gb|AFO11408.1| RNA polymerase I, partial [Tetrapisispora phaffii]
Length = 871
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 143/419 (34%), Positives = 218/419 (52%), Gaps = 45/419 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S L +V Q + P+ P G++QD + KL+LRD F+ + +N++Y +
Sbjct: 311 RAELSQLCSVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDCFIELDQLLNMLY---WVP 367
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + P I KP+PLW+GKQ+LS I PK + R E G+T
Sbjct: 368 DWDGIIPTPAIIKPVPLWSGKQILSIAI----PKGIHLQRFDE-----------GTTML- 411
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ D + I G+++ G++DKK GS+ GL+H V G + + + K+
Sbjct: 412 ---SPKDNGMLIIDGQIIFGVVDKKTVGSSNGGLIHVVTREKGPQICAKMFGNIQKVVNF 468
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+ GF+ G+ D + ++ T+ I A+R E +E
Sbjct: 469 WFLHNGFSTGIGDTIADGGTMKEITETIADAKRKVEEVT-------------------KE 509
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPF---PANNLQFMVESGAKGST 309
A A++ + + + +S D V +N+ G + NN++ MV +G+KGS
Sbjct: 510 AQANLLTAKHGMTLR-ESFEDNVVRFLNEARDKAGRLAEVNLNDLNNVKQMVSAGSKGSF 568
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+S +GQ +EGKR A RTLP F + SP + GFV+ ++ G+ PQEFFF
Sbjct: 569 INIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFF 628
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
H M GREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S ++IQ +YGEDG+D
Sbjct: 629 HAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDSTTRNSLGNVIQFVYGEDGID 687
>gi|119643649|gb|ABL85581.1| RNA polymerase II largest subunit [Platismatia glauca]
Length = 996
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 145/418 (34%), Positives = 218/418 (52%), Gaps = 44/418 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE + L V + P+ PL G++QD + K+ RD FLT+ + MN++ L +
Sbjct: 427 RAEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFLTKKQVMNIL---LWVP 483
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + P I KP+ +WTGKQ+LS VI P ++R ++ G
Sbjct: 484 DWDGVIPQPAIVKPLAMWTGKQILSLVI----PTGLNLLR---------------GSEEG 524
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
L V D + I GEL+ G+L+KK G++ G++H +++ G E A++ + +
Sbjct: 525 L-SPVNDDGLLISGGELMYGLLNKKSVGASGGGVIHIIFNEKGPEAAMNFFNGAQTVVNY 583
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + DR + I A E L EI S +
Sbjct: 584 WLLHNGFSIGIGDTIP----DRHTIQQIENAV---NEQKAEVL--------EITRSATEN 628
Query: 253 AYASIP--QFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTV 310
S+P R + + L+K ++ V E ++ F NN M SG+KGST+
Sbjct: 629 QLDSLPGMNVRETFESKVSKALNKARDDAGTVT--ENSLKDF--NNATQMARSGSKGSTI 684
Query: 311 NTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFH 370
N Q++ ++GQ +EGKR RTLP F + SP + GFV+ ++ G+ P EFFFH
Sbjct: 685 NISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFH 744
Query: 371 CMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
MAGREGLIDTAVKT+ +GY+QR LVK LE + YD TVR+S ++Q +YGEDGLD
Sbjct: 745 AMAGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLD 802
>gi|341858934|gb|AEK97377.1| ribosomal polymerase II largest subunit [Beauveria asiatica]
gi|341858936|gb|AEK97378.1| ribosomal polymerase II largest subunit [Beauveria asiatica]
Length = 953
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 147/421 (34%), Positives = 219/421 (52%), Gaps = 48/421 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + + P+ PL G++QD + KL RDTF+ + NL+ L +
Sbjct: 415 RAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDKELVQNLM---LWVP 471
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N + P I KP P WTGKQ++S VI P+ + + EL D +
Sbjct: 472 NWDGVIPQPAILKPRPRWTGKQIISMVI---PPEISLYSKEDEL-----DNPRH------ 517
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
D + I+ GEL+ G+L KK G+ G++H ++ G E A++ L+ + ++ T
Sbjct: 518 ------DAGLLIQSGELMYGLLKKKSVGAAPGGIIHLCYNELGPEGAMAFLNGVQQVVTY 571
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKAR----RLGTEAACNALGLPLDTDPEIISS 248
+L GF++G+ D + + K + I++ + RL +A N L
Sbjct: 572 WLLNTGFSIGIGDTVPDKATINKIQEHIDEHKAEVARLTAQATANEL------------- 618
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGS 308
EA + RA + + L+ + + + L + +NN M +SG+KGS
Sbjct: 619 ---EALPGM-NVRATFENKVSMALNMARDQAGTSTM-KSLKD---SNNAVTMADSGSKGS 670
Query: 309 TVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFF 368
++N Q++ L+GQ +EGKR RTLP F + SP A GFV+ ++ G+ P EFF
Sbjct: 671 SINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFF 730
Query: 369 FHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
FH MAGREGLIDTAVKT+ +GY+QR LVK LE L+ YD TVR+S +IQ LYGEDGLD
Sbjct: 731 FHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDVIQFLYGEDGLD 790
Query: 429 V 429
Sbjct: 791 A 791
>gi|400603032|gb|EJP70630.1| RNA polymerase Rpb1 [Beauveria bassiana ARSEF 2860]
Length = 1759
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 149/424 (35%), Positives = 220/424 (51%), Gaps = 54/424 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + + P+ PL G++QD + KL RDTF+ + NL+ L +
Sbjct: 512 RAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDKELVQNLM---LWVP 568
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVI---INLTPKDKVIIRHGELLSGILDKKQFGST 129
N + P I KP P WTGKQ++S VI I+L K+ DK
Sbjct: 569 NWDGVIPQPAILKPRPRWTGKQIISMVIPPEISLYSKE--------------DK------ 608
Query: 130 QYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L + D + I+ GEL+ G+L KK G+ G++H ++ G E A++ L+ + ++
Sbjct: 609 ---LDNPRHDAGLLIQSGELMYGLLKKKSVGAAAGGIIHLCYNELGPEGAMAFLNGVQQV 665
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKAR----RLGTEAACNALGLPLDTDPEI 245
T +L GF++G+ D + + K + I++ + RL +A N L
Sbjct: 666 VTYWLLNTGFSIGIGDTVPDKATINKIQEHIDEHKAEVARLTAQATANEL---------- 715
Query: 246 ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGA 305
EA + RA + + L+ + + + L + +NN M +SG+
Sbjct: 716 ------EALPGM-NVRATFENKVSMALNMARDQAGTSTM-KSLKD---SNNAVTMADSGS 764
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS++N Q++ L+GQ +EGKR RTLP F + SP A GFV+ ++ G+ P
Sbjct: 765 KGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPS 824
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EFFFH MAGREGLIDTAVKT+ +GY+QR LVK LE L+ YD TVR+S +IQ LYGED
Sbjct: 825 EFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDVIQFLYGED 884
Query: 426 GLDV 429
GLD
Sbjct: 885 GLDA 888
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
+ +PGE VGVLAAQSIGEP+TQMTLNTFHFAG NVTLG+PRL+EIL +A K IKTP
Sbjct: 1070 AFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLA-KNIKTP 1128
Query: 630 SMEI 633
SM +
Sbjct: 1129 SMAV 1132
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 69/122 (56%), Gaps = 1/122 (0%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D + Y ND++ + +G+EA +++E+ NV A G V+ RH++L+ D MT+ G
Sbjct: 1343 VDPTRTYSNDLYQITEVFGVEAVRSALVKELTNVLAFDGSYVNHRHIALLCDIMTYRGVI 1402
Query: 946 VAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
A+ R+GI R + + + +FE +E + +A+ G D R S VMLGQ GTG F
Sbjct: 1403 SAVTRHGINRADTGALMRCSFEETVEILLEAAATGELDDCRGISENVMLGQLAPMGTGNF 1462
Query: 1005 QL 1006
+
Sbjct: 1463 DV 1464
>gi|337263122|gb|AEI69272.1| DNA-directed RNA polymerase II largest subunit [Encephalitozoon
hellem]
Length = 1478
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 148/446 (33%), Positives = 220/446 (49%), Gaps = 62/446 (13%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S+ KAE L VS Q + P+ P+ G++QD + +LRDTFL E M L+Y
Sbjct: 463 SYTSKAELEELALVSKQIISPQSNKPVMGIVQDTLTGLRLFTLRDTFLNEREVMLLLYA- 521
Query: 69 LCILNTEIRTLPP-----------------------TIWKPMPLWTGKQVLSTVIINLTP 105
+N E PP I KPM LWTGKQ+LS V+ N+
Sbjct: 522 ---VNIEFCDTPPGSTGYIGLRRTKDYDIMKVLKRPAIAKPMRLWTGKQILSFVLPNMN- 577
Query: 106 KDKVIIRHGELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYG 165
+G + ++ + DT V I+ G + SG++DKK G+TQ G
Sbjct: 578 -----------YTGFSSEHNDEDSE-----NINDTKVIIQDGYIHSGVIDKKAAGATQGG 621
Query: 166 LVHAVWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKAR 224
LVH +++ G + A + + ++ V++ + F++G+ D + D K K++ +A
Sbjct: 622 LVHIIFNDFGPKRAAQFFNGVQRMINVFMTGIHTFSIGIGDTIA----DAKTVKMVEEAI 677
Query: 225 RLGTEAACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCL 284
R E II + Q +P + ++S L+ V N V
Sbjct: 678 RKAKEEVS-----------VIIENARQNRLERLPGM--TMKESFESHLNLVLNRARDVSG 724
Query: 285 PEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPY 344
NN++ MV +G+KGS +N Q++ +GQ +EGKR S RTLP F+
Sbjct: 725 TSAQRSLSGNNNMKTMVLAGSKGSFINISQVTACVGQQNVEGKRIPFGFSHRTLPHFVKD 784
Query: 345 EVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTV 404
+ + R+ GFV+ ++TG+ P+EFFFH M GREGLIDTA+KT+ +GY+QR LVK LE V
Sbjct: 785 DYTGRSRGFVENSYLTGLDPEEFFFHAMGGREGLIDTAIKTAETGYIQRRLVKALEDAIV 844
Query: 405 HYDMTVRDSDLSLIQVLYGEDGLDVT 430
D +VR + + QV YGEDG D T
Sbjct: 845 RQDESVRSGNGLVYQVKYGEDGFDAT 870
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 62/101 (61%), Gaps = 2/101 (1%)
Query: 561 DMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILM 620
+M K L + P E VG LAAQS+GEP+TQMTLNTFH AG VT+G+PRL+EI
Sbjct: 1032 EMTKAKILKARITPNEMVGTLAAQSVGEPATQMTLNTFHLAGVSS-TVTMGVPRLKEIFN 1090
Query: 621 MATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADV 661
+ TK +KTPSM+I D K + A + + + + D+
Sbjct: 1091 V-TKNLKTPSMKIYLDKDHCKTIESAKAIQNEIECLCVKDL 1130
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 61/110 (55%), Gaps = 1/110 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
ND+ +A T GIEAA I+RE+ V G V+ RH+SL+AD MT G + R+G+
Sbjct: 1293 NDLIEIAETLGIEAARESILRELAIVIDGNGSYVNYRHMSLLADVMTMRGYLCGITRHGV 1352
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTG 1002
+ +++ +FE +E + A++ ++ R + +M+GQ GTG
Sbjct: 1353 NKAGAGALKRSSFEETVEILLDAALVSEKNLCRGITENIMMGQLAPMGTG 1402
>gi|353251633|pdb|3J0K|A Chain A, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
Length = 1455
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 146/421 (34%), Positives = 217/421 (51%), Gaps = 49/421 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S L V Q + P+ P G++QD + KL+LRDTF+ + +N++Y +
Sbjct: 498 RAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLY---WVP 554
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGI-LDKKQFGSTQY 131
+ + P I KP PLW+GKQ+LS I N GI L + G+T
Sbjct: 555 DWDGVIPTPAIIKPKPLWSGKQILSVAIPN----------------GIHLQRFDEGTT-- 596
Query: 132 GLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFT 191
+ + D + I G+++ G+++KK GS+ GL+H V G + L + K+
Sbjct: 597 --LLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVN 654
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARR----LGTEAACNALGLPLDTDPEIIS 247
+L GF+ G+ D + R+ T+ I +A++ + EA N L
Sbjct: 655 FWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLL------------ 702
Query: 248 SQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKG 307
+ F + R DK + +V L + NN++ MV +G+KG
Sbjct: 703 -TAKHGMTLRESFEDNVVRFLNEARDK-AGRLAEVNLKD-------LNNVKQMVMAGSKG 753
Query: 308 STVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEF 367
S +N Q+S +GQ +EGKR A RTLP F + SP + GFV+ ++ G+ PQEF
Sbjct: 754 SFINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEF 813
Query: 368 FFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL 427
FFH M GREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S ++IQ +YGEDG+
Sbjct: 814 FFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGM 873
Query: 428 D 428
D
Sbjct: 874 D 874
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 133/449 (29%), Positives = 210/449 (46%), Gaps = 69/449 (15%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
L S+ +PGE VGVLAAQSIGEP+TQMTLNTFHFAG VT G+PRL+EIL +A K +K
Sbjct: 1054 LRSVVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVA-KNMK 1112
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNY------ 681
TPS+ + P +++A + ++ T L+ V I + P+P
Sbjct: 1113 TPSLTVYLEPGHAADQEQAKLIRSAIEHTT----LKSVTIASEIYYDPDPRSTVIPEDEE 1168
Query: 682 --QMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQ 739
Q+ F + + P +L LE+ RAA K++ + Q ++
Sbjct: 1169 IIQLHFSLLDEEAEQSFDQQSP----------WLLRLEL---DRAAMNDKDLTMGQVGER 1215
Query: 740 MEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERM 799
++ ++D + V E+ DE+ ++ +V + + D E +E+ M
Sbjct: 1216 IKQTFKND--------------LFVIWSEDNDEKLIIRC--RVVRPKSLDAETEAEEDHM 1259
Query: 800 SEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNL 859
+ KIE N+ ++ V N +V YD+K +PS
Sbjct: 1260 LK--------------KIENTMLENITLRGVENIERVVM-MKYDRK---------VPSPT 1295
Query: 860 FEE-KESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKN 918
E KE + +L+TDG+N++ + +D ++Y N + GIEA + +EV N
Sbjct: 1296 GEYVKEPEWVLETDGVNLSEVMTVPG-IDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYN 1354
Query: 919 VFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASM 977
V A G V+ RH++L+ D MT G ++ R+G R N + + +FE +E + +A
Sbjct: 1355 VIASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGA 1414
Query: 978 QGREDSLRAPSARVMLGQECRQGTGLFQL 1006
D R S V+LGQ GTG F +
Sbjct: 1415 SAELDDCRGVSENVILGQMAPIGTGAFDV 1443
>gi|57472114|gb|AAW51135.1| RNA polymerase II largest subunit [Calostoma cinnabarinum]
Length = 994
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 154/442 (34%), Positives = 227/442 (51%), Gaps = 60/442 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S + V Q + P+ P+ G++QD + K +LRDTFL + N++ L +
Sbjct: 418 RAELSQIAWVPLQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLDWNQVQNIL---LWVP 474
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + P I KP PLW+GKQ+LS VI P+ G + D K
Sbjct: 475 DWDGHVPTPAIIKPKPLWSGKQILSMVI----PR-------GINIHXAPDPKS------- 516
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ V+D + I +GE+L GI+DKK G+TQ GL+H V+ G + + + + +
Sbjct: 517 -SNPVFDDGMLIDNGEILFGIMDKKTVGATQGGLIHVVFREKGPDATRQVFTGIQIVVNY 575
Query: 193 YLQRVGFTLGVRDILVRQERDRKRT-KIINKARRLGTEAACNALGLPLDTDPEIISSQLQ 251
+L GF++ + D + + T KI K +++ EII
Sbjct: 576 WLYHNGFSIXIGDTIAGPKVMSFITDKIAEKKQKVS----------------EIIDDAYH 619
Query: 252 EAYASIP------QFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGA 305
+ ++P F ++R+ D+ + Q L E NN++ MV +G+
Sbjct: 620 DRLRAMPGMTIRESFENMVERELNRARDE-SGQYAQKNLKED-------NNVKQMVTAGS 671
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS +N Q+S +GQ +EGKR RTLP F + SP A GFV+ ++ G+ PQ
Sbjct: 672 KGSYINISQMSVCVGQQSVEGKRIPFGFRHRTLPHFNKDDFSPEARGFVENSYLRGLTPQ 731
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EFFFH M G EGLIDTAVKT+ +GY+QR LVK LE + VHYD TVR+S LIQ +YGED
Sbjct: 732 EFFFHAMGGXEGLIDTAVKTAETGYIQRRLVKALEDVMVHYDGTVRNSLGDLIQFIYGED 791
Query: 426 GLD--VTKRQ-----YLTDKQF 440
G+D +RQ L+DK+F
Sbjct: 792 GMDGAFIERQKIDTFALSDKEF 813
>gi|397135858|gb|AFO11424.1| RNA polymerase I, partial [Pichia membranifaciens]
Length = 870
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 144/423 (34%), Positives = 217/423 (51%), Gaps = 43/423 (10%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S+ +AE S L V Q + P+ P+ G++QD + K++LRD+FL +E M++ Y
Sbjct: 307 SYETRAELSELCAVPLQIISPQSNKPVMGIVQDTLCGVRKMTLRDSFLEYSEVMSICY-- 364
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR-HGELLSGILDKKQFG 127
I + + P I KP PLWTGKQ++S I PK + R G LLS
Sbjct: 365 -WIPDWDGVIPQPAILKPKPLWTGKQIMSLCI----PKGIFLQRLDGSLLSPK------- 412
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
D+ + I GE++ G+++K GS+ GL+H G L +
Sbjct: 413 -----------DSGMLILDGEIIFGVVNKATVGSSAGGLIHTTMREKGPTVCAKLFGNIQ 461
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIIS 247
K+ +L GF++G+ D + E + T+ I +A+ +A L+ +P +
Sbjct: 462 KVVNYWLLHNGFSIGIGDAIADPETMKAITETIKEAKDKVQGVIRDAQKNLLEAEPGMT- 520
Query: 248 SQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKG 307
L+E++ + + K+ N NN++ MV +G+KG
Sbjct: 521 --LRESF--------------EQKVSKILNEARDSAGKSAETSLKDDNNVKQMVTAGSKG 564
Query: 308 STVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEF 367
S +N Q+S +GQ +EGKR + R+LP F + S + GFV+ ++ G+ PQEF
Sbjct: 565 SYINISQMSACVGQQIVEGKRINFGFADRSLPHFTTDDYSAESKGFVENSYLRGLTPQEF 624
Query: 368 FFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL 427
FFH MAGREGLIDTAVKT+ +GY+QR L+K LE + VHYD T R+S +IQ +YGEDGL
Sbjct: 625 FFHAMAGREGLIDTAVKTAETGYIQRRLLKALEDIMVHYDGTTRNSLGDVIQFIYGEDGL 684
Query: 428 DVT 430
D T
Sbjct: 685 DAT 687
>gi|341858938|gb|AEK97379.1| ribosomal polymerase II largest subunit [Beauveria asiatica]
Length = 954
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 147/421 (34%), Positives = 219/421 (52%), Gaps = 48/421 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + + P+ PL G++QD + KL RDTF+ + NL+ L +
Sbjct: 416 RAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDKELVQNLM---LWVP 472
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N + P I KP P WTGKQ++S VI P+ + + EL D +
Sbjct: 473 NWDGVIPQPAILKPRPRWTGKQIISMVI---PPEISLYSKEDEL-----DNPRH------ 518
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
D + I+ GEL+ G+L KK G+ G++H ++ G E A++ L+ + ++ T
Sbjct: 519 ------DAGLLIQSGELMYGLLKKKSVGAAPGGIIHLCYNELGPEGAMAFLNGVQQVVTY 572
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKAR----RLGTEAACNALGLPLDTDPEIISS 248
+L GF++G+ D + + K + I++ + RL +A N L
Sbjct: 573 WLLNTGFSIGIGDTVPDKATINKIQEHIDEHKAEVARLTAQATANEL------------- 619
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGS 308
EA + RA + + L+ + + + L + +NN M +SG+KGS
Sbjct: 620 ---EALPGM-NVRATFENKVSMALNMARDQAGTSTM-KSLKD---SNNAVTMADSGSKGS 671
Query: 309 TVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFF 368
++N Q++ L+GQ +EGKR RTLP F + SP A GFV+ ++ G+ P EFF
Sbjct: 672 SINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFF 731
Query: 369 FHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
FH MAGREGLIDTAVKT+ +GY+QR LVK LE L+ YD TVR+S +IQ LYGEDGLD
Sbjct: 732 FHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDVIQFLYGEDGLD 791
Query: 429 V 429
Sbjct: 792 A 792
>gi|341858928|gb|AEK97374.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
Length = 954
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 149/424 (35%), Positives = 220/424 (51%), Gaps = 54/424 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + + P+ PL G++QD + KL RDTF+ + NL+ L +
Sbjct: 416 RAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDKELVQNLM---LWVP 472
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVI---INLTPKDKVIIRHGELLSGILDKKQFGST 129
N + P I KP P WTGKQ++S VI I+L K+ DK
Sbjct: 473 NWDGVIPQPAILKPRPRWTGKQIISMVIPPEISLYSKE--------------DK------ 512
Query: 130 QYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L + D + I+ GEL+ G+L KK G+ G++H ++ G E A++ L+ + ++
Sbjct: 513 ---LDNPRHDAGLLIQSGELMYGLLKKKSVGAAAGGIIHLCYNELGPEGAMAFLNGVQQV 569
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKAR----RLGTEAACNALGLPLDTDPEI 245
T +L GF++G+ D + + K + I++ + RL +A N L
Sbjct: 570 VTYWLLNTGFSIGIGDTVPDKATINKIQEHIDEHKAEVARLTAQATANEL---------- 619
Query: 246 ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGA 305
EA + RA + + L+ + + + L + +NN M +SG+
Sbjct: 620 ------EALPGM-NVRATFENKVSMALNMARDQAGTSTM-KSLKD---SNNAVTMADSGS 668
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS++N Q++ L+GQ +EGKR RTLP F + SP A GFV+ ++ G+ P
Sbjct: 669 KGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPS 728
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EFFFH MAGREGLIDTAVKT+ +GY+QR LVK LE L+ YD TVR+S +IQ LYGED
Sbjct: 729 EFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDVIQFLYGED 788
Query: 426 GLDV 429
GLD
Sbjct: 789 GLDA 792
>gi|110669633|gb|ABG81911.1| RNA polymerase II largest subunit [Mycoblastus sanguinarius]
Length = 1016
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 139/418 (33%), Positives = 219/418 (52%), Gaps = 44/418 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S L V + P+ PL G++QD + K+ RD FL++ + MN++ L +
Sbjct: 433 RAEVSGLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFLSKEQVMNIL---LWVP 489
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + P I+KP P+WTGKQ+LS VI P ++R GS + G
Sbjct: 490 DWDGVIPQPAIFKPRPMWTGKQILSLVI----PAGLNLLR--------------GSNE-G 530
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
++ D + + GEL+ G+ +KK G+T G++H +++ G E A++ + +
Sbjct: 531 FT-SLTDDGLLVSGGELMYGLFNKKSVGATGGGVIHIIYNEKGPEVAMNFFNGAQTVVNY 589
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + + ++ +N+ + D EI + +
Sbjct: 590 WLLHNGFSIGIGDTIPDRNTIQQIEDAVNRQK---------------DEVGEITRNATEN 634
Query: 253 AYASIP--QFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTV 310
S+P R + + L+K ++ V E ++ NN M SG+KGST+
Sbjct: 635 ELESLPGMNVRETFESEVSKALNKARDDAGTVT--ENSLKDL--NNATQMARSGSKGSTI 690
Query: 311 NTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFH 370
N Q++ ++GQ +EGKR RTLP F + SP + GFV+ ++ G+ P EFFFH
Sbjct: 691 NISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFH 750
Query: 371 CMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
MAGREGLIDTAVKT+ +GY+QR LVK LE + YD TVR+S ++Q +YGEDGLD
Sbjct: 751 AMAGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLD 808
Score = 44.7 bits (104), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/25 (80%), Positives = 22/25 (88%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMT 594
+ NPGE VGVLAAQSIGEP+TQMT
Sbjct: 992 AAVNPGEMVGVLAAQSIGEPATQMT 1016
>gi|341858996|gb|AEK97408.1| ribosomal polymerase II largest subunit [Beauveria caledonica]
gi|341858998|gb|AEK97409.1| ribosomal polymerase II largest subunit [Beauveria caledonica]
Length = 954
Score = 220 bits (561), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 149/424 (35%), Positives = 220/424 (51%), Gaps = 54/424 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + + P+ PL G++QD + KL RDTF+ + NL+ L +
Sbjct: 416 RAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDKELVQNLM---LWVP 472
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVI---INLTPKDKVIIRHGELLSGILDKKQFGST 129
N + P I KP P WTGKQ++S VI I+L K+ DK
Sbjct: 473 NWDGVIPQPAILKPRPRWTGKQIISMVIPPEISLYSKE--------------DK------ 512
Query: 130 QYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L + D + I+ GEL+ G+L KK G+ G++H ++ G E A++ L+ + ++
Sbjct: 513 ---LDNPRHDAGLLIQSGELMYGLLKKKSVGAAAGGIIHLCYNELGPEGAMAFLNGVQQV 569
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKAR----RLGTEAACNALGLPLDTDPEI 245
T +L GF++G+ D + + K + I++ + RL +A N L
Sbjct: 570 VTYWLLNTGFSIGIGDTVPDKATINKIQEHIDEHKAEVARLTAQATANEL---------- 619
Query: 246 ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGA 305
EA + RA + + L+ + + + L + +NN M +SG+
Sbjct: 620 ------EALPGM-NVRATFENKVSMALNMARDQAGTSTM-KSLKD---SNNAVTMADSGS 668
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS++N Q++ L+GQ +EGKR RTLP F + SP A GFV+ ++ G+ P
Sbjct: 669 KGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPS 728
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EFFFH MAGREGLIDTAVKT+ +GY+QR LVK LE L+ YD TVR+S +IQ LYGED
Sbjct: 729 EFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDVIQFLYGED 788
Query: 426 GLDV 429
GLD
Sbjct: 789 GLDA 792
>gi|341858970|gb|AEK97395.1| ribosomal polymerase II largest subunit [Beauveria kipukae]
Length = 954
Score = 220 bits (561), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 149/424 (35%), Positives = 220/424 (51%), Gaps = 54/424 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + + P+ PL G++QD + KL RDTF+ + NL+ L +
Sbjct: 416 RAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDKELVQNLM---LWVP 472
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVI---INLTPKDKVIIRHGELLSGILDKKQFGST 129
N + P I KP P WTGKQ++S VI I+L K+ DK
Sbjct: 473 NWDGVIPQPAILKPRPRWTGKQIISMVIPPEISLYSKE--------------DK------ 512
Query: 130 QYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L + D + I+ GEL+ G+L KK G+ G++H ++ G E A++ L+ + ++
Sbjct: 513 ---LDNPRHDAGLLIQSGELMYGLLKKKSVGAAAGGIIHLCYNELGPEGAMAFLNGVQQV 569
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKAR----RLGTEAACNALGLPLDTDPEI 245
T +L GF++G+ D + + K + I++ + RL +A N L
Sbjct: 570 VTYWLLNTGFSIGIGDTVPDKATINKIQEHIDEHKAEVARLTAQATANEL---------- 619
Query: 246 ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGA 305
EA + RA + + L+ + + + L + +NN M +SG+
Sbjct: 620 ------EALPGM-NVRATFENKVSMALNMARDQAGTSTM-KSLKD---SNNAVTMADSGS 668
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS++N Q++ L+GQ +EGKR RTLP F + SP A GFV+ ++ G+ P
Sbjct: 669 KGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPS 728
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EFFFH MAGREGLIDTAVKT+ +GY+QR LVK LE L+ YD TVR+S +IQ LYGED
Sbjct: 729 EFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDVIQFLYGED 788
Query: 426 GLDV 429
GLD
Sbjct: 789 GLDA 792
>gi|341858884|gb|AEK97352.1| ribosomal polymerase II largest subunit [Beauveria bassiana]
Length = 954
Score = 220 bits (561), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 149/424 (35%), Positives = 220/424 (51%), Gaps = 54/424 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + + P+ PL G++QD + KL RDTF+ + NL+ L +
Sbjct: 416 RAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDKELVQNLM---LWVP 472
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVI---INLTPKDKVIIRHGELLSGILDKKQFGST 129
N + P I KP P WTGKQ++S VI I+L K+ DK
Sbjct: 473 NWDGVIPQPAILKPRPRWTGKQIISMVIPPEISLYSKE--------------DK------ 512
Query: 130 QYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L + D + I+ GEL+ G+L KK G+ G++H ++ G E A++ L+ + ++
Sbjct: 513 ---LDNPRHDAGLLIQSGELMYGLLKKKSVGAAAGGIIHLCYNELGPEGAMAFLNGVQQV 569
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKAR----RLGTEAACNALGLPLDTDPEI 245
T +L GF++G+ D + + K + I++ + RL +A N L
Sbjct: 570 VTYWLLNTGFSIGIGDTVPDKATINKIQEHIDEHKAEVARLTAQATANEL---------- 619
Query: 246 ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGA 305
EA + RA + + L+ + + + L + +NN M +SG+
Sbjct: 620 ------EALPGM-NVRATFENKVSMALNMARDQAGTSTM-KSLKD---SNNAVTMADSGS 668
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS++N Q++ L+GQ +EGKR RTLP F + SP A GFV+ ++ G+ P
Sbjct: 669 KGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPS 728
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EFFFH MAGREGLIDTAVKT+ +GY+QR LVK LE L+ YD TVR+S +IQ LYGED
Sbjct: 729 EFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSMGDVIQFLYGED 788
Query: 426 GLDV 429
GLD
Sbjct: 789 GLDA 792
>gi|341859004|gb|AEK97412.1| ribosomal polymerase II largest subunit [Beauveria caledonica]
Length = 954
Score = 220 bits (561), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 149/424 (35%), Positives = 220/424 (51%), Gaps = 54/424 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + + P+ PL G++QD + KL RDTF+ + NL+ L +
Sbjct: 416 RAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDKELVQNLM---LWVP 472
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVI---INLTPKDKVIIRHGELLSGILDKKQFGST 129
N + P I KP P WTGKQ++S VI I+L K+ DK
Sbjct: 473 NWDGVIPQPAILKPRPRWTGKQIISMVIPPEISLYSKE--------------DK------ 512
Query: 130 QYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L + D + I+ GEL+ G+L KK G+ G++H ++ G E A++ L+ + ++
Sbjct: 513 ---LDNPRHDAGLLIQSGELMYGLLKKKSVGAAAGGIIHLCYNELGPEGAMAFLNGVQQV 569
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKAR----RLGTEAACNALGLPLDTDPEI 245
T +L GF++G+ D + + K + I++ + RL +A N L
Sbjct: 570 VTYWLLNTGFSIGIGDTVPDKATINKIQEHIDEHKAEVARLTAQATANEL---------- 619
Query: 246 ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGA 305
EA + RA + + L+ + + + L + +NN M +SG+
Sbjct: 620 ------EALPGM-NVRATFENKVSMALNMARDQAGTSTM-KSLKD---SNNAVTMADSGS 668
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS++N Q++ L+GQ +EGKR RTLP F + SP A GFV+ ++ G+ P
Sbjct: 669 KGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPS 728
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EFFFH MAGREGLIDTAVKT+ +GY+QR LVK LE L+ YD TVR+S +IQ LYGED
Sbjct: 729 EFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDVIQFLYGED 788
Query: 426 GLDV 429
GLD
Sbjct: 789 GLDA 792
>gi|316997019|dbj|BAJ52637.1| RNA polymerase II largest subunit [Monosiga ovata]
Length = 1289
Score = 220 bits (561), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 144/432 (33%), Positives = 222/432 (51%), Gaps = 43/432 (9%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S +AE M V L P+ P+ G++QD + + KL+ RDTF+ R++ M L+
Sbjct: 7 SQLTRAEIIENMMVHKNVLSPQANRPVMGIVQDTLCAARKLTKRDTFIERSQLMCLL--- 63
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVI---INLTPKDKVIIRHGELLSGILDKKQ 125
L + N R PP + KP LWTGKQ+ S ++ INLT R D Q
Sbjct: 64 LFLPNWNGRLPPPAVVKPKELWTGKQLFSLILPPGINLT-------REHSAHQSKNDTPQ 116
Query: 126 FGSTQYGLVH-----AVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAI 180
+ ++ +DT V + +G+LLSGI+ KK G++ L+H +W +G E
Sbjct: 117 PSDSPETVMWKDPAITTFDTKVLVENGQLLSGIICKKSLGASGGSLIHIIWLDYGPEITR 176
Query: 181 SLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKAR----RLGTEAACNALG 236
+ + +L G ++GV+D + + R + +A + TEA + L
Sbjct: 177 QFFGNVQTVINNWLLLEGQSIGVKDTIADENTYRAVRSCLERATKEVDKTITEARNDLL- 235
Query: 237 LPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANN 296
+P+ ++ LQ ++ + + + S +K + NN
Sbjct: 236 -----EPKPGNTLLQTFELTVNEILNKAREETGSDAEKSLSEF---------------NN 275
Query: 297 LQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDG 356
+ M +G+KGS++N Q+ +GQ +EGKR RTLP F+ + P + GFV
Sbjct: 276 FKAMAIAGSKGSSLNISQVIACVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVFN 335
Query: 357 RFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLS 416
++ G+ PQEFFFH M GREGLIDTAVKT+ +GY+QR LVK +EGLT+HYD +VR+S+
Sbjct: 336 SYLAGLSPQEFFFHAMGGREGLIDTAVKTATTGYIQRRLVKAMEGLTLHYDGSVRNSNGD 395
Query: 417 LIQVLYGEDGLD 428
L+Q+LYGED +D
Sbjct: 396 LLQLLYGEDFMD 407
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
+L+ A+PGE VG LAA+ +GEP TQMTLNTFH+AG NVTLG+PRL+EI+ + +KA K
Sbjct: 592 MLARAHPGEMVGALAAECLGEPLTQMTLNTFHYAGVSSKNVTLGVPRLQEIINV-SKAPK 650
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKI 667
TPS+ I L + + +A ++ + T+ V I
Sbjct: 651 TPSLVIYLLGEAVSDKNEAKKVLNELELCTLRQVTASSAI 690
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 73/140 (52%), Gaps = 2/140 (1%)
Query: 868 LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 927
LL+TDG + + RH+ D + ND+ S GIEA + + E+KNV G V
Sbjct: 848 LLETDGSALLDVMCNRHV-DAYRTMTNDVVECFSVLGIEAGRQCVENEIKNVLDNSGAYV 906
Query: 928 DPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRA 986
+ RHLSL+ + MT G +A+ R+G+ R + + +FE ++ + +AS D LR
Sbjct: 907 NYRHLSLLCNIMTSKGYLMAITRHGVNRQKVGALMRCSFEETVDILMEASAHAECDHLRG 966
Query: 987 PSARVMLGQECRQGTGLFQL 1006
S +MLG GTG F L
Sbjct: 967 VSENIMLGNLVPAGTGFFDL 986
>gi|341858968|gb|AEK97394.1| ribosomal polymerase II largest subunit [Beauveria varroae]
Length = 954
Score = 220 bits (561), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 149/424 (35%), Positives = 220/424 (51%), Gaps = 54/424 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + + P+ PL G++QD + KL RDTF+ + NL+ L +
Sbjct: 416 RAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDKELVQNLM---LWVP 472
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVI---INLTPKDKVIIRHGELLSGILDKKQFGST 129
N + P I KP P WTGKQ++S VI I+L K+ DK
Sbjct: 473 NWDGVIPQPAILKPRPRWTGKQIISMVIPPEISLYSKE--------------DK------ 512
Query: 130 QYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L + D + I+ GEL+ G+L KK G+ G++H ++ G E A++ L+ + ++
Sbjct: 513 ---LDNPRHDAGLLIQSGELMYGLLKKKSVGAAAGGIIHLCYNELGPEGAMAFLNGVQQV 569
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKAR----RLGTEAACNALGLPLDTDPEI 245
T +L GF++G+ D + + K + I++ + RL +A N L
Sbjct: 570 VTYWLLNTGFSIGIGDTVPDKATINKIQEHIDEHKAEVARLTAQATANEL---------- 619
Query: 246 ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGA 305
EA + RA + + L+ + + + L + +NN M +SG+
Sbjct: 620 ------EALPGM-NVRATFENKVSMALNMARDQAGTSTM-KSLKD---SNNAVTMADSGS 668
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS++N Q++ L+GQ +EGKR RTLP F + SP A GFV+ ++ G+ P
Sbjct: 669 KGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPS 728
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EFFFH MAGREGLIDTAVKT+ +GY+QR LVK LE L+ YD TVR+S +IQ LYGED
Sbjct: 729 EFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDVIQFLYGED 788
Query: 426 GLDV 429
GLD
Sbjct: 789 GLDA 792
>gi|341858940|gb|AEK97380.1| ribosomal polymerase II largest subunit [Beauveria australis]
Length = 954
Score = 220 bits (561), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 149/424 (35%), Positives = 220/424 (51%), Gaps = 54/424 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + + P+ PL G++QD + KL RDTF+ + NL+ L +
Sbjct: 416 RAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDKELVQNLM---LWVP 472
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVI---INLTPKDKVIIRHGELLSGILDKKQFGST 129
N + P I KP P WTGKQ++S VI I+L K+ DK
Sbjct: 473 NWDGVIPQPAILKPRPRWTGKQIISMVIPPEISLYSKE--------------DK------ 512
Query: 130 QYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L + D + I+ GEL+ G+L KK G+ G++H ++ G E A++ L+ + ++
Sbjct: 513 ---LDNPRHDAGLLIQSGELMYGLLKKKSVGAAAGGIIHLCYNELGPEGAMAFLNGVQQV 569
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKAR----RLGTEAACNALGLPLDTDPEI 245
T +L GF++G+ D + + K + I++ + RL +A N L
Sbjct: 570 VTYWLLNTGFSIGIGDTVPDKATINKIQEHIDEHKAEVARLTAQATANEL---------- 619
Query: 246 ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGA 305
EA + RA + + L+ + + + L + +NN M +SG+
Sbjct: 620 ------EALPGM-NVRATFENKVSMALNMARDQAGTSTM-KSLKD---SNNAVTMADSGS 668
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS++N Q++ L+GQ +EGKR RTLP F + SP A GFV+ ++ G+ P
Sbjct: 669 KGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPS 728
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EFFFH MAGREGLIDTAVKT+ +GY+QR LVK LE L+ YD TVR+S +IQ LYGED
Sbjct: 729 EFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDVIQFLYGED 788
Query: 426 GLDV 429
GLD
Sbjct: 789 GLDA 792
>gi|341859000|gb|AEK97410.1| ribosomal polymerase II largest subunit [Beauveria caledonica]
gi|341859002|gb|AEK97411.1| ribosomal polymerase II largest subunit [Beauveria caledonica]
gi|341859006|gb|AEK97413.1| ribosomal polymerase II largest subunit [Beauveria caledonica]
Length = 954
Score = 220 bits (561), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 149/424 (35%), Positives = 220/424 (51%), Gaps = 54/424 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + + P+ PL G++QD + KL RDTF+ + NL+ L +
Sbjct: 416 RAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDKELVQNLM---LWVP 472
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVI---INLTPKDKVIIRHGELLSGILDKKQFGST 129
N + P I KP P WTGKQ++S VI I+L K+ DK
Sbjct: 473 NWDGVIPQPAILKPRPRWTGKQIISMVIPPEISLYSKE--------------DK------ 512
Query: 130 QYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L + D + I+ GEL+ G+L KK G+ G++H ++ G E A++ L+ + ++
Sbjct: 513 ---LDNPRHDAGLLIQSGELMYGLLKKKSVGAAAGGIIHLCYNELGPEGAMAFLNGVQQV 569
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKAR----RLGTEAACNALGLPLDTDPEI 245
T +L GF++G+ D + + K + I++ + RL +A N L
Sbjct: 570 VTYWLLNTGFSIGIGDTVPDKATINKIQEHIDEHKAEVARLTAQATANEL---------- 619
Query: 246 ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGA 305
EA + RA + + L+ + + + L + +NN M +SG+
Sbjct: 620 ------EALPGM-NVRATFENKVSMALNMARDQAGTSTM-KSLKD---SNNAVTMADSGS 668
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS++N Q++ L+GQ +EGKR RTLP F + SP A GFV+ ++ G+ P
Sbjct: 669 KGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPS 728
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EFFFH MAGREGLIDTAVKT+ +GY+QR LVK LE L+ YD TVR+S +IQ LYGED
Sbjct: 729 EFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDVIQFLYGED 788
Query: 426 GLDV 429
GLD
Sbjct: 789 GLDA 792
>gi|341858964|gb|AEK97392.1| ribosomal polymerase II largest subunit [Beauveria varroae]
gi|341858966|gb|AEK97393.1| ribosomal polymerase II largest subunit [Beauveria varroae]
Length = 954
Score = 220 bits (561), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 149/424 (35%), Positives = 220/424 (51%), Gaps = 54/424 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + + P+ PL G++QD + KL RDTF+ + NL+ L +
Sbjct: 416 RAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDKELVQNLM---LWVP 472
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVI---INLTPKDKVIIRHGELLSGILDKKQFGST 129
N + P I KP P WTGKQ++S VI I+L K+ DK
Sbjct: 473 NWDGVIPQPAILKPRPRWTGKQIISMVIPPEISLYSKE--------------DK------ 512
Query: 130 QYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L + D + I+ GEL+ G+L KK G+ G++H ++ G E A++ L+ + ++
Sbjct: 513 ---LDNPRHDAGLLIQSGELMYGLLKKKSVGAAAGGIIHLCYNELGPEGAMAFLNGVQQV 569
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKAR----RLGTEAACNALGLPLDTDPEI 245
T +L GF++G+ D + + K + I++ + RL +A N L
Sbjct: 570 VTYWLLNTGFSIGIGDTVPDKATINKIQEHIDEHKAEVARLTAQATANEL---------- 619
Query: 246 ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGA 305
EA + RA + + L+ + + + L + +NN M +SG+
Sbjct: 620 ------EALPGM-NVRATFENKVSMALNMARDQAGTSTM-KSLKD---SNNAVTMADSGS 668
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS++N Q++ L+GQ +EGKR RTLP F + SP A GFV+ ++ G+ P
Sbjct: 669 KGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPS 728
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EFFFH MAGREGLIDTAVKT+ +GY+QR LVK LE L+ YD TVR+S +IQ LYGED
Sbjct: 729 EFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDVIQFLYGED 788
Query: 426 GLDV 429
GLD
Sbjct: 789 GLDA 792
>gi|31127048|gb|AAC03137.3| RNA polymerase II largest subunit [Mastigoproctus giganteus]
Length = 887
Score = 220 bits (561), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 148/417 (35%), Positives = 209/417 (50%), Gaps = 32/417 (7%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V Q + P+ P+ G++QD + + K++ RD FL + + MNL L L
Sbjct: 151 RAEVQELALVPRQIITPQSNKPVMGIVQDTLTAVRKMTKRDVFLEKDQMMNL----LMFL 206
Query: 73 NTEIRTLP-PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQY 131
+P P + KP PLWTGKQ+ S +I P + +IR D +
Sbjct: 207 PIWDGKMPMPAVLKPKPLWTGKQLFSLII----PDNVNLIRTHSTHPDDEDDGPYKWISP 262
Query: 132 GLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFT 191
G DT V I HG+L+SGI+ KK GS L+H V+ G E A + + +
Sbjct: 263 G------DTKVLIEHGQLISGIVCKKTVGSASGSLMHVVFAELGHEVAGAFYGHIQTVVN 316
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQ 251
+L G T+G+ D + + I KA+ E A L+ P + L+
Sbjct: 317 NWLLLEGHTIGIGDTIADPQTYIDIQNTIKKAKHDVIEVIEKAHNDELEPTP---GNTLR 373
Query: 252 EAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVN 311
+ F Q++R DK T Q L E NN + MV SGAKGS +N
Sbjct: 374 QT------FENQVNRILNDARDK-TGASAQKSLSE-------FNNFKAMVVSGAKGSKIN 419
Query: 312 TMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHC 371
Q+ +GQ +EGKR RTLP F+ + P + GFV+ ++ G+ P EFFFH
Sbjct: 420 ISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHA 479
Query: 372 MAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
M GREGLIDTAVKT+ +GY+QR L+K +E + YD T+R+S +IQ+ YGEDGLD
Sbjct: 480 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMATYDGTIRNSTGQVIQLRYGEDGLD 536
>gi|341859010|gb|AEK97415.1| ribosomal polymerase II largest subunit [Beauveria malawiensis]
gi|341859012|gb|AEK97416.1| ribosomal polymerase II largest subunit [Beauveria malawiensis]
Length = 954
Score = 220 bits (561), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 149/424 (35%), Positives = 220/424 (51%), Gaps = 54/424 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + + P+ PL G++QD + KL RDTF+ + NL+ L +
Sbjct: 416 RAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDKELVQNLM---LWVP 472
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVI---INLTPKDKVIIRHGELLSGILDKKQFGST 129
N + P I KP P WTGKQ++S VI I+L K+ DK
Sbjct: 473 NWDGVIPQPAILKPRPRWTGKQIISMVIPPEISLYSKE--------------DK------ 512
Query: 130 QYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L + D + I+ GEL+ G+L KK G+ G++H ++ G E A++ L+ + ++
Sbjct: 513 ---LDNPRHDAGLLIQSGELMYGLLKKKSVGAAAGGIIHLCYNELGPEGAMAFLNGVQQV 569
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKAR----RLGTEAACNALGLPLDTDPEI 245
T +L GF++G+ D + + K + I++ + RL +A N L
Sbjct: 570 VTYWLLNTGFSIGIGDTVPDKATINKIQEHIDEHKAEVARLTAQATANEL---------- 619
Query: 246 ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGA 305
EA + RA + + L+ + + + L + +NN M +SG+
Sbjct: 620 ------EALPGM-NVRATFENKVSMALNMARDQAGTSTM-KSLKD---SNNAVTMADSGS 668
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS++N Q++ L+GQ +EGKR RTLP F + SP A GFV+ ++ G+ P
Sbjct: 669 KGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPS 728
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EFFFH MAGREGLIDTAVKT+ +GY+QR LVK LE L+ YD TVR+S +IQ LYGED
Sbjct: 729 EFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDVIQFLYGED 788
Query: 426 GLDV 429
GLD
Sbjct: 789 GLDA 792
>gi|341859014|gb|AEK97417.1| ribosomal polymerase II largest subunit [Beauveria malawiensis]
Length = 954
Score = 220 bits (561), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 149/424 (35%), Positives = 220/424 (51%), Gaps = 54/424 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + + P+ PL G++QD + KL RDTF+ + NL+ L +
Sbjct: 416 RAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDKELVQNLM---LWVP 472
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVI---INLTPKDKVIIRHGELLSGILDKKQFGST 129
N + P I KP P WTGKQ++S VI I+L K+ DK
Sbjct: 473 NWDGVIPQPAILKPRPRWTGKQIISMVIPPEISLYSKE--------------DK------ 512
Query: 130 QYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L + D + I+ GEL+ G+L KK G+ G++H ++ G E A++ L+ + ++
Sbjct: 513 ---LDNPRHDAGLLIQSGELMYGLLKKKSVGAAAGGIIHLCYNELGPEGAMAFLNGVQQV 569
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKAR----RLGTEAACNALGLPLDTDPEI 245
T +L GF++G+ D + + K + I++ + RL +A N L
Sbjct: 570 VTYWLLNTGFSIGIGDTVPDKATINKIQEHIDEHKAEVARLTAQATANEL---------- 619
Query: 246 ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGA 305
EA + RA + + L+ + + + L + +NN M +SG+
Sbjct: 620 ------EALPGM-NVRATFENKVSMALNMARDQAGTSTM-KSLKD---SNNAVTMADSGS 668
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS++N Q++ L+GQ +EGKR RTLP F + SP A GFV+ ++ G+ P
Sbjct: 669 KGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPS 728
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EFFFH MAGREGLIDTAVKT+ +GY+QR LVK LE L+ YD TVR+S +IQ LYGED
Sbjct: 729 EFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDVIQFLYGED 788
Query: 426 GLDV 429
GLD
Sbjct: 789 GLDA 792
>gi|410075914|ref|XP_003955539.1| hypothetical protein KAFR_0B01060 [Kazachstania africana CBS 2517]
gi|372462122|emb|CCF56404.1| hypothetical protein KAFR_0B01060 [Kazachstania africana CBS 2517]
Length = 1685
Score = 220 bits (561), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 144/421 (34%), Positives = 218/421 (51%), Gaps = 45/421 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S L V Q + P+ P G++QD + L+L+DTFL +N++Y +
Sbjct: 498 RAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRILTLKDTFLEFDHVLNMLY---WVP 554
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + P I KP PLWTGKQ+LS I PK + R E G+T
Sbjct: 555 DWDGIIPTPAILKPKPLWTGKQILSAAI----PKGIHLQRFDE-----------GTT--- 596
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ + D + I G+++ G++DKK GS+ GL+H V G + L + K+
Sbjct: 597 -LLSPKDNGMLIIDGQIIFGVVDKKTVGSSSGGLIHVVTREKGPQVCSRLFGNIQKVVNF 655
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF+ G+ D + E ++ T+ I +A++ E +E
Sbjct: 656 WLLHNGFSTGIGDTIANGETIKEITETIAEAKKKVEEVT-------------------KE 696
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQF---MVESGAKGST 309
A A++ + + + +S D V +N+ G + N+ + MV +G+KGS
Sbjct: 697 AQANLLTAKHGMTLR-ESFEDNVVRFLNEARDKAGRLAEVNLNDTNYVKQMVSAGSKGSF 755
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+S +GQ +EGKR RTLP F + SP + GFV+ ++ G+ PQEFFF
Sbjct: 756 INIAQMSACVGQQSVEGKRIGYGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFF 815
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H M GREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S ++IQ +YGEDG+D
Sbjct: 816 HAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGNIIQFIYGEDGIDA 875
Query: 430 T 430
+
Sbjct: 876 S 876
Score = 141 bits (356), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 130/447 (29%), Positives = 206/447 (46%), Gaps = 69/447 (15%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
L S+ +PGE VGVLAAQSIGEP+TQMTLNTFHFAG VT G+PRL+EIL +A K +K
Sbjct: 1054 LRSVVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVA-KNMK 1112
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNY------ 681
TPS+ + +++A + ++ T L+ V + + P+P
Sbjct: 1113 TPSLTVYLEEKYAADQERAKYIRSAIEHTT----LKSVTVASEIYYDPDPRSTVIEDDEE 1168
Query: 682 --QMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQ 739
Q+ F + M P +L LE+ RAA K++ + Q ++
Sbjct: 1169 IIQLHFSLLDEEMEASLDQQSP----------WLLRLEL---DRAAMNDKDLTMGQVGER 1215
Query: 740 MEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERM 799
+++ + D + V E+ E+ ++ +V + + D E +E+ M
Sbjct: 1216 IKETFKKD--------------LFVIWSEDNAEKLIIRC--RVVRPKGLDAETEAEEDHM 1259
Query: 800 SEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNL 859
+ KIE N+ ++ V N +V YD+K +PS
Sbjct: 1260 LK--------------KIENTMLENITLRGVENIERVVM-MKYDRK---------VPSKT 1295
Query: 860 FE-EKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKN 918
E +K + +L+TDG+N+ + +D ++Y N + GIEA + +EV N
Sbjct: 1296 GEFQKVPEWVLETDGVNLAEVMTIPG-VDTTRIYTNSFIDIMEVLGIEAGRAALYKEVYN 1354
Query: 919 VFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASM 977
V A G V+ RH++L+ D MT G ++ R+G R N + + +FE +E + +A
Sbjct: 1355 VIASDGSYVNYRHMALLVDVMTCQGGLTSVTRHGFNRANTGALMRCSFEETVEILFEAGA 1414
Query: 978 QGREDSLRAPSARVMLGQECRQGTGLF 1004
D R S V+LGQ GTG F
Sbjct: 1415 SAELDDCRGVSENVLLGQMAPIGTGAF 1441
>gi|399569176|gb|AFP47206.1| ribosomal polymerase II largest subunit, partial [Beauveria lii]
Length = 954
Score = 220 bits (561), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 149/424 (35%), Positives = 219/424 (51%), Gaps = 54/424 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + + P+ PL G++QD + KL RDTF+ + NL+ L +
Sbjct: 416 RAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDKELVQNLM---LWVP 472
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVI---INLTPKDKVIIRHGELLSGILDKKQFGST 129
N + P I KP P WTGKQ++S VI I+L K+ DK
Sbjct: 473 NWDGVIPQPAILKPRPRWTGKQIISMVIPPEISLYSKE--------------DK------ 512
Query: 130 QYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L + D + I+ GEL+ G+L KK G+ G++H ++ G E A++ L+ + ++
Sbjct: 513 ---LDNPRHDAGLLIQSGELMYGLLKKKSVGAAAGGIIHLCYNELGPEGAMAFLNGVQQV 569
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKAR----RLGTEAACNALGLPLDTDPEI 245
T +L GF++G+ D + + K + I+K + RL +A N L
Sbjct: 570 VTYWLLNTGFSIGIGDTVPDKATINKIQEHIDKHKAEVARLTAQATANEL---------- 619
Query: 246 ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGA 305
EA + RA + + L+ + + + L + +NN M +SG+
Sbjct: 620 ------EALPGM-NVRATFENKVSMALNMARDQAGTSTM-KSLKD---SNNAVTMADSGS 668
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS++N Q++ L+GQ +EGKR RTLP F + SP A GFV+ ++ G+ P
Sbjct: 669 KGSSINISQMTALVGQQVVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPS 728
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EFFFH MAGREGLIDTAVKT+ +GY+QR LVK LE L+ YD TVR+S + Q LYGED
Sbjct: 729 EFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDVTQFLYGED 788
Query: 426 GLDV 429
GLD
Sbjct: 789 GLDA 792
>gi|354482229|ref|XP_003503302.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
[Cricetulus griseus]
Length = 1280
Score = 220 bits (561), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 153/442 (34%), Positives = 224/442 (50%), Gaps = 30/442 (6%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF RA+ ++ L
Sbjct: 516 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 575
Query: 73 NTEI--RTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ +I R PPTI KP+ LWTGKQ+ S + L P D +R G KQ+
Sbjct: 576 DEKIKVRLPPPTILKPVTLWTGKQIFSII---LRPSDDSPVRANLRTKG----KQYCGKG 628
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L V D++VTI++ EL+SG +DK GS ++ + + + G A +S LA+L
Sbjct: 629 EDL--CVNDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARL 686
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
VYL GF++G+ D+ Q + + +++N + C+ L+T Q
Sbjct: 687 APVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYK-----KCDEYIEALNTG----KLQ 737
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
Q + A I ++ L + ++ CL E +N+ M G+KGS
Sbjct: 738 QQPGCTAEETLEALILKE----LSVIRDHAGSACLRE----LDKSNSPLTMALCGSKGSF 789
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ +GQ + G R R+LP F + P A FV F +G+ P EFFF
Sbjct: 790 INISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKEFVANSFYSGLTPTEFFF 849
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H MAGREGL+DTAVKT+ +GY+QR LVK LE L YD+TVR S +IQ +YG DGLD
Sbjct: 850 HTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDP 909
Query: 430 TKRQYLTDK-QFSFLEDNIKWI 450
+ + +F + DNIK +
Sbjct: 910 AAMEGKDEPLEFKRVLDNIKAV 931
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 902 TYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFI 960
T GIEAA II E++ +G+ ++ RH+ L++D MT+ G + + R G+ ++ S +
Sbjct: 1174 TLGIEAARTTIINEIQYTMFNHGMSINRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVL 1233
Query: 961 QKMTFEMPLEKIRQASMQGREDSL 984
+FE + + A+ G++DS+
Sbjct: 1234 MLASFEKTADHLFDAAYFGQKDSV 1257
>gi|341859008|gb|AEK97414.1| ribosomal polymerase II largest subunit [Beauveria vermiconia]
Length = 954
Score = 220 bits (561), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 149/424 (35%), Positives = 220/424 (51%), Gaps = 54/424 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + + P+ PL G++QD + KL RDTF+ + NL+ L +
Sbjct: 416 RAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDKELVQNLM---LWVP 472
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVI---INLTPKDKVIIRHGELLSGILDKKQFGST 129
N + P I KP P WTGKQ++S VI I+L K+ DK
Sbjct: 473 NWDGVIPQPAILKPRPRWTGKQIISMVIPPEISLYSKE--------------DK------ 512
Query: 130 QYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L + D + I+ GEL+ G+L KK G+ G++H ++ G E A++ L+ + ++
Sbjct: 513 ---LDNPRHDAGLLIQSGELMYGLLKKKSVGAAAGGIIHLCYNELGPEGAMAFLNGVQQV 569
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKAR----RLGTEAACNALGLPLDTDPEI 245
T +L GF++G+ D + + K + I++ + RL +A N L
Sbjct: 570 VTYWLLNTGFSIGIGDTVPDKATINKIQEHIDEHKAEVARLTAQATANEL---------- 619
Query: 246 ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGA 305
EA + RA + + L+ + + + L + +NN M +SG+
Sbjct: 620 ------EALPGM-NVRATFENKVSMALNMARDQAGTSTM-KSLKD---SNNAVTMADSGS 668
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS++N Q++ L+GQ +EGKR RTLP F + SP A GFV+ ++ G+ P
Sbjct: 669 KGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPS 728
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EFFFH MAGREGLIDTAVKT+ +GY+QR LVK LE L+ YD TVR+S +IQ LYGED
Sbjct: 729 EFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDVIQFLYGED 788
Query: 426 GLDV 429
GLD
Sbjct: 789 GLDA 792
>gi|397135952|gb|AFO11471.1| RNA polymerase I, partial [Yarrowia lipolytica]
Length = 870
Score = 220 bits (561), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 141/418 (33%), Positives = 214/418 (51%), Gaps = 43/418 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S L V Q + P+ P+ G++QD + K+++RD+F+ MN+++ I
Sbjct: 311 RAELSQLCMVPLQIVSPQSNKPVMGIVQDTLCGVRKMTIRDSFIDYDMVMNILF---WIP 367
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N + P I KP PLWTGKQ++S I PK G L D+ +
Sbjct: 368 NWDGVVPTPAILKPKPLWTGKQMVSMCI----PK-------GIHLQRFDDQNPITCPK-- 414
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
D + I G+++ G++DKK G+T GLVH + G+ + + K+
Sbjct: 415 ------DNGMYIIDGQIMWGVVDKKTIGATGGGLVHTIMREKGSAVCCNFFGTIQKVVNF 468
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + R T+ I +A++ E + E
Sbjct: 469 WLLHYGFSIGIGDTIADSATMRDVTETIEEAKKKVKEI-------------------ILE 509
Query: 253 AYASIPQFRA--QIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTV 310
A+A+ A + ++ + +V N + NN++ MV +G+KGS +
Sbjct: 510 AHANTLTAEAGMTMRESFEHNVSRVLNQARDTAGRSAEMSLKDLNNVKQMVVAGSKGSFI 569
Query: 311 NTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFH 370
N Q+S +GQ +EGKR + RTLP F + SP + GF++ ++ G+ PQEFFFH
Sbjct: 570 NISQMSACVGQQMVEGKRVPFGFADRTLPHFCKDDYSPESKGFIENSYLRGLTPQEFFFH 629
Query: 371 CMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
MAGREGLIDTAVKT+ +GY+QR LVK LE + V YD TVR+S +IQ +YGEDGLD
Sbjct: 630 AMAGREGLIDTAVKTAETGYIQRRLVKALEDVMVQYDGTVRNSLGDVIQFVYGEDGLD 687
>gi|341858880|gb|AEK97350.1| ribosomal polymerase II largest subunit [Beauveria bassiana]
gi|341858882|gb|AEK97351.1| ribosomal polymerase II largest subunit [Beauveria bassiana]
gi|341858886|gb|AEK97353.1| ribosomal polymerase II largest subunit [Beauveria bassiana]
gi|341858888|gb|AEK97354.1| ribosomal polymerase II largest subunit [Beauveria bassiana]
gi|341858890|gb|AEK97355.1| ribosomal polymerase II largest subunit [Beauveria bassiana]
gi|341858892|gb|AEK97356.1| ribosomal polymerase II largest subunit [Beauveria bassiana]
gi|341858894|gb|AEK97357.1| ribosomal polymerase II largest subunit [Beauveria bassiana]
gi|341858896|gb|AEK97358.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858898|gb|AEK97359.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858900|gb|AEK97360.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858902|gb|AEK97361.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858904|gb|AEK97362.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858906|gb|AEK97363.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858908|gb|AEK97364.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858910|gb|AEK97365.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858912|gb|AEK97366.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858914|gb|AEK97367.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858916|gb|AEK97368.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858918|gb|AEK97369.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858920|gb|AEK97370.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858922|gb|AEK97371.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858924|gb|AEK97372.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858926|gb|AEK97373.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858930|gb|AEK97375.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858932|gb|AEK97376.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
gi|341858942|gb|AEK97381.1| ribosomal polymerase II largest subunit [Beauveria australis]
gi|341858944|gb|AEK97382.1| ribosomal polymerase II largest subunit [Beauveria australis]
Length = 954
Score = 220 bits (561), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 149/424 (35%), Positives = 220/424 (51%), Gaps = 54/424 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + + P+ PL G++QD + KL RDTF+ + NL+ L +
Sbjct: 416 RAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDKELVQNLM---LWVP 472
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVI---INLTPKDKVIIRHGELLSGILDKKQFGST 129
N + P I KP P WTGKQ++S VI I+L K+ DK
Sbjct: 473 NWDGVIPQPAILKPRPRWTGKQIISMVIPPEISLYSKE--------------DK------ 512
Query: 130 QYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L + D + I+ GEL+ G+L KK G+ G++H ++ G E A++ L+ + ++
Sbjct: 513 ---LDNPRHDAGLLIQSGELMYGLLKKKSVGAAAGGIIHLCYNELGPEGAMAFLNGVQQV 569
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKAR----RLGTEAACNALGLPLDTDPEI 245
T +L GF++G+ D + + K + I++ + RL +A N L
Sbjct: 570 VTYWLLNTGFSIGIGDTVPDKATINKIQEHIDEHKAEVARLTAQATANEL---------- 619
Query: 246 ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGA 305
EA + RA + + L+ + + + L + +NN M +SG+
Sbjct: 620 ------EALPGM-NVRATFENKVSMALNMARDQAGTSTM-KSLKD---SNNAVTMADSGS 668
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS++N Q++ L+GQ +EGKR RTLP F + SP A GFV+ ++ G+ P
Sbjct: 669 KGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPS 728
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EFFFH MAGREGLIDTAVKT+ +GY+QR LVK LE L+ YD TVR+S +IQ LYGED
Sbjct: 729 EFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDVIQFLYGED 788
Query: 426 GLDV 429
GLD
Sbjct: 789 GLDA 792
>gi|308159479|gb|EFO62008.1| RNA polymerase AI large subunit [Giardia lamblia P15]
Length = 2148
Score = 220 bits (561), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 148/433 (34%), Positives = 210/433 (48%), Gaps = 76/433 (17%)
Query: 81 PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYGLVHAVWDT 140
P+I P WTGK V+S+++ ++ + + I G + F T+ LV
Sbjct: 948 PSIVYPAARWTGKAVISSMLHKISCQRESINYTGSVKIPTDIWGPFQDTEAKLV------ 1001
Query: 141 HVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFT 200
I + LL+GI+DK+ + +GL HA+++ +G LS +L T LQR GFT
Sbjct: 1002 ---IINNTLLTGIVDKQHIATVPHGLTHAIFELYGHNRCGWFLSNFGRLATYVLQRHGFT 1058
Query: 201 LGVRDILVRQERDRKRTKIINKARRLGT-------------------------------- 228
V D+++R ++ R K+ + G
Sbjct: 1059 CSVEDMVLRDTTEKARYKLCDDILASGAIRTAEFLCEYLTLTGLLGNLEASDANFLMKFA 1118
Query: 229 EAACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGL 288
E L + D I S L+++ + A++D + + +T N+ +VC P L
Sbjct: 1119 EKGSVDLKTLSEKDRLRIYSILRDSLSLDTTIEARLDNHISNEANLITTNLMKVCSPSNL 1178
Query: 289 I----------EPFPA----------------------NNLQFMVESGAKGSTVNTMQIS 316
I P+ N L +MV SGAKGSTVN ++
Sbjct: 1179 ILKMRSSISSNNPYGTPKLGTSSKVYLCSRNMASQKSINCLAYMVLSGAKGSTVNLQMMT 1238
Query: 317 CLLGQIELEGKRPAMMVSGRTLPSFLPYE-VSPRAGGFVDGRFMTGIQPQEFFFHCMAGR 375
LGQ LEG+R +G+TLPS +PYE GG+V RF+TGI+P FFFHC AGR
Sbjct: 1239 TCLGQQNLEGRRVPSTQTGKTLPSHIPYEHCELVQGGYVIDRFLTGIRPSSFFFHCQAGR 1298
Query: 376 EGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYL 435
EGLIDTA+KT+ SGY QR L+K+LEGL V YD TVR SD L+Q+LYG DG+D TK YL
Sbjct: 1299 EGLIDTAIKTASSGYFQRVLIKNLEGLAVAYDGTVRRSDNMLVQLLYGGDGVDTTKTSYL 1358
Query: 436 TDKQFSFLEDNIK 448
++F F+ N K
Sbjct: 1359 --QEFEFMYQNQK 1369
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 69/122 (56%)
Query: 885 LLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGT 944
+++ + +Y N+I + YGIEAA II E+ VF Y IEVD RHLSL+AD MT SG
Sbjct: 2023 IINFDNIYTNNISQIFEVYGIEAARNAIIEEIHRVFNTYHIEVDERHLSLIADSMTLSGC 2082
Query: 945 YVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
+NR +R + K +FE + ++ DSLRAP+ V +GQ QGTG F
Sbjct: 2083 VRGLNRLEMRHQTEELLKASFESACTSLAAGALTSGFDSLRAPAGAVTVGQYPSQGTGSF 2142
Query: 1005 QL 1006
L
Sbjct: 2143 DL 2144
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 70/125 (56%), Gaps = 12/125 (9%)
Query: 521 PLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKF----YDMIFYKNLL------S 570
P+ P + GS S + + ++ +Y + +D +++K L S
Sbjct: 1548 PIHMILSPYLYLGSTSPSFSKALNEYVSQKQSEKQTQMMGEHGFDPVYFKLLAYTKFIRS 1607
Query: 571 LANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPS 630
L PG VGV+AAQS GEPSTQ+TLNTFH AG G +N T+G+PRLREI+M T+ +P
Sbjct: 1608 LIAPGSAVGVIAAQSTGEPSTQLTLNTFHLAGHGGVNATMGVPRLREIIM--TRNTSSPI 1665
Query: 631 MEIPF 635
+ + F
Sbjct: 1666 ITMSF 1670
>gi|209880239|ref|XP_002141559.1| DNA-directed RNA polymerase II subunit RPB1 [Cryptosporidium muris
RN66]
gi|209557165|gb|EEA07210.1| DNA-directed RNA polymerase II subunit RPB1, putative
[Cryptosporidium muris RN66]
Length = 1927
Score = 220 bits (561), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 144/435 (33%), Positives = 224/435 (51%), Gaps = 37/435 (8%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S+ ++E LM V Q + P+ P+ G++QD ++ L+ + TFLT+ ++ L+
Sbjct: 490 SYETRSEIKHLMMVPKQIVSPQGNRPVIGIVQDSLLGLFLLTRKSTFLTKDRFLQLL--- 546
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLT-----PKDKVIIRHGELLSGILDK 123
LCI PP I +P PLWTGKQ++ TV++ T P + ++R G +++ I
Sbjct: 547 LCIPYWNGIIPPPAILRPQPLWTGKQII-TVLLTFTTDLGEPIELNLMRDGSIVN-IRSS 604
Query: 124 KQFGS-------TQYGLVHAVW----DTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWD 172
G+ + +++ W D V I+ GE + GI+ KK GS+ L+H +W+
Sbjct: 605 NTSGNKSENKDEAKETIINNPWISEYDNQVLIQQGEHICGIITKKIAGSSSGSLIHILWN 664
Query: 173 THGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAAC 232
G E L+ + +L GFT+G +DI K + ++ +
Sbjct: 665 EIGPEKTGLFLTYTQMVVNTWLLEHGFTVGCQDIQPLNFTLEKIMTSLENSKLHVQQIIR 724
Query: 233 NALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPF 292
A LD P + + F AQ++++ S + ++ + E L +P
Sbjct: 725 RAQKGQLDCQP---------GKSLVESFEAQVNQELNSARE-----MSGIIATENL-DPS 769
Query: 293 PANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGG 352
NN+ MV+ G+KGST+N QI +GQ +EGKR R+LP FL Y+ P + G
Sbjct: 770 -KNNMIAMVQCGSKGSTINISQIMACVGQQNVEGKRIPFGFRDRSLPHFLKYDYGPESRG 828
Query: 353 FVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRD 412
FV +++G+ PQE FFH M GREG+IDTA KTS +GY+QR L+K +E V YD TVR+
Sbjct: 829 FVSNSYLSGLTPQEVFFHAMGGREGIIDTACKTSETGYIQRRLIKAMEDCMVQYDRTVRN 888
Query: 413 SDLSLIQVLYGEDGL 427
+IQ LYGEDG+
Sbjct: 889 CCGDIIQFLYGEDGM 903
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/70 (64%), Positives = 57/70 (81%), Gaps = 4/70 (5%)
Query: 564 FYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMAT 623
FY+ SLA+ GE VG +AAQSIGEP+TQMTLNTFHFAG G NVTLG+PRLRE++ +A
Sbjct: 1105 FYR---SLAHSGEMVGTIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLRELINVA- 1160
Query: 624 KAIKTPSMEI 633
K ++TP++ I
Sbjct: 1161 KNVRTPTLTI 1170
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 82/145 (56%), Gaps = 2/145 (1%)
Query: 863 KESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 922
++++ +L TDG N+ + + +D + NDI + S GIEA R +++E++ V +
Sbjct: 1374 RDNQWVLDTDGCNLEAVLCHE-AIDSTRTISNDITEVFSVLGIEAVRRALLKELRTVISF 1432
Query: 923 YGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGRE 981
G V+ RHL+L+ D MT G +++ R+G+ R++ +QK +FE +E + A+M G
Sbjct: 1433 DGSYVNYRHLALLCDNMTQKGHLMSITRHGMNRVDRGPLQKCSFEETVEILMDAAMFGET 1492
Query: 982 DSLRAPSARVMLGQECRQGTGLFQL 1006
D L S VM+GQ GT F L
Sbjct: 1493 DYLNGVSENVMVGQLSPYGTACFDL 1517
>gi|120561203|gb|ABM26987.1| RNA polymerase II largest subunit, partial [Taphrina deformans]
Length = 1001
Score = 220 bits (561), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 148/422 (35%), Positives = 215/422 (50%), Gaps = 39/422 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE + + V Q L P+ P G++QD + K ++RDTF+ ++ MN++ + +
Sbjct: 421 RAEITEICMVPRQILAPQANKPCMGIVQDALCGIRKFTIRDTFMAKSHVMNIL---MWVP 477
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
PP I KP LWTGKQ+LS VI PK I H D KQ G
Sbjct: 478 GWNGIVPPPAILKPQQLWTGKQILSMVI----PKG---INHSRN-----DDKQ------G 519
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
L + D + I GE+L G+++KK GS+Q GL+H + G E + +
Sbjct: 520 LDNPN-DVGMMIEDGEILYGVVNKKTVGSSQGGLIHIIMKEKGWEACRDFFTATQMVVNY 578
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+ GF++G+ D + ++ + T I KA+ +A L +P + L+E
Sbjct: 579 WFLHNGFSIGIGDTIADRQTMEEITNEIAKAKLKVQGIVSDAQLNKLKQEPGMT---LRE 635
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
+ F A + + D V N + N ++ MV +G+KGS +N
Sbjct: 636 S------FEAGVSQVLNGARDTVGKNAESSLSKQ--------NAVKQMVIAGSKGSFINI 681
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EGKR RTLP F + SP + GFV+ ++ G+ PQEFFFH M
Sbjct: 682 SQMSACVGQQMVEGKRIPYGFKFRTLPHFTKDDYSPESRGFVENSYLRGLTPQEFFFHAM 741
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKR 432
AGREGLIDTAVKT+ +GY+QR LVK LE + V YD TVR+S +I +YGEDGLD
Sbjct: 742 AGREGLIDTAVKTAETGYIQRRLVKALEDVGVKYDGTVRNSLGDIINFVYGEDGLDAASV 801
Query: 433 QY 434
+Y
Sbjct: 802 EY 803
>gi|397135830|gb|AFO11410.1| RNA polymerase I, partial [Zygotorulaspora mrakii]
Length = 871
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 145/422 (34%), Positives = 216/422 (51%), Gaps = 47/422 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S L V Q + P+ P G++QD + KL+LRD F+ + +N++Y +
Sbjct: 311 RAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDNFIELDQVLNMLY---WVP 367
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + P I KP PLWTGKQ+LS I PK + R E G+T
Sbjct: 368 DWDGVIPTPAIIKPKPLWTGKQILSIAI----PKGIHLQRFDE-----------GTT--- 409
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ + D + I G+++ G+++KK GS+ GL+H V G + L + K+
Sbjct: 410 -LLSPKDNGMLIIDGQIIFGVVEKKTVGSSSGGLIHVVTREKGPQVCARLFGNIQKVVNY 468
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARR----LGTEAACNALGLPLDTDPEIISS 248
+ GF+ G+ D + + R+ T+ I A++ + EA N L
Sbjct: 469 WFLHNGFSTGIGDTIADGQTMREITETIADAKKKVEDVTKEAQANLL------------- 515
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGS 308
+ F + R DK + +V L + NN++ MV +G+KGS
Sbjct: 516 TAKHGMTLRESFEDNVVRFLNEARDK-AGRLAEVNLKD-------LNNVKQMVSAGSKGS 567
Query: 309 TVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFF 368
+N Q+S +GQ +EGKR A RTLP F + SP + GFV+ ++ G+ PQEFF
Sbjct: 568 FINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFF 627
Query: 369 FHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
FH M GREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S ++IQ +YGEDG+D
Sbjct: 628 FHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDSTTRNSLGNVIQFVYGEDGVD 687
Query: 429 VT 430
+
Sbjct: 688 AS 689
>gi|324120552|dbj|BAJ78667.1| RNA polymerase II largest subunit [Blattella nipponica]
Length = 1598
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 147/416 (35%), Positives = 210/416 (50%), Gaps = 32/416 (7%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L Q + P+ P+ G++QD + + K++ RD FL + + MNL L L
Sbjct: 506 RAEVENLHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEKEQMMNL----LMFL 561
Query: 73 NTEIRTLP-PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQY 131
+P P I KP PLWTGKQV S +I P + +IR D +
Sbjct: 562 PIWDGKMPQPAIMKPKPLWTGKQVFSLII----PGNVNMIRTHSTHPDEEDDGPYKWISP 617
Query: 132 GLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFT 191
G DT V + HGEL+ GIL KK G++ L+H + G E + +
Sbjct: 618 G------DTKVMVEHGELVMGILCKKTLGTSAGSLLHICFLELGHEVCGQFYGNIQTVVN 671
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQ 251
+L G ++G+ D + + + K I KA+ E A + L+ P + L+
Sbjct: 672 NWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTP---GNTLR 728
Query: 252 EAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVN 311
+ F Q++R DK + + L E NNL+ MV SG+KGS +N
Sbjct: 729 QT------FENQVNRILNDARDKTGGSAKK-----SLTE---YNNLKAMVVSGSKGSNIN 774
Query: 312 TMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHC 371
Q+ +GQ +EGKR RTLP F+ + P + GFV+ ++ G+ P EFFFH
Sbjct: 775 ISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHA 834
Query: 372 MAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL 427
M GREGLIDTAVKT+ +GY+QR L+K +E + VHYD TVR+S LIQ+ YGEDGL
Sbjct: 835 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGL 890
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 131/452 (28%), Positives = 214/452 (47%), Gaps = 53/452 (11%)
Query: 572 ANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSM 631
+PGE VG LAAQS+GEP+TQMTLNTFHFAG NVTLG+PRL+EI+ ++ K K PS+
Sbjct: 1075 VSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKP-KAPSL 1133
Query: 632 EIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPH---MNYQMKFCFI 688
+ + +KA + + T L KV + P+P + +F
Sbjct: 1134 TVFLTGAAARDAEKAKNVLCRLEHTT----LRKVTANTAIYYDPDPQNTVIAEDQEF--- 1186
Query: 689 PAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDE 748
++Y + P++I R IE R +M D E
Sbjct: 1187 -VNVYYEMPDFDPTRISPWLLR----------------------IELDRKRMTDKKLTME 1223
Query: 749 GEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNT 808
+ AE A G D++ D + + ++ +DN F+ DEE ++ EDD
Sbjct: 1224 -QIAEKINAGFGD-DLNCIFNDDNAEKLVLRIRIMNSDDNKFQ---DEEETVDKMEDDMF 1278
Query: 809 SNIGERFKIEFRDSTNVFVKDVVNQHNI-VHKYSYDKKNHMWCKLLFLPSNLFEEKESKH 867
IE +++ ++ + + +H D K +++ + F+ ++
Sbjct: 1279 LRC-----IEANMLSDMTLQGIEAIGKVYMHLPQTDSKK----RIIVTDTGEFKAI-AEW 1328
Query: 868 LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 927
LL+TDG ++ + R + D N+ + NDI + S GIEA + + +E+ V YG+ V
Sbjct: 1329 LLETDGTSMMKVLSERDV-DTNRTFSNDICEIFSVLGIEAVRKSVEKEMNTVLQFYGLYV 1387
Query: 928 DPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRA 986
+ RHL+L+ D MT G +A+ R+GI R + + + +FE ++ + A+ D +R
Sbjct: 1388 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRG 1447
Query: 987 PSARVMLGQECRQGTGLFQ-LRNREKKKKKVE 1017
S +++GQ R GTG F L + EK K +E
Sbjct: 1448 VSENIIMGQLPRLGTGCFDLLLDAEKCKAGIE 1479
>gi|397135934|gb|AFO11462.1| RNA polymerase I, partial [Candida petrohuensis]
Length = 868
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 145/419 (34%), Positives = 216/419 (51%), Gaps = 39/419 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S L V Q + P+ P+ G++QD + KL+ RDTF+ + MNL++ I
Sbjct: 311 RAELSQLCMVPLQIISPQSNKPVMGIVQDTLCGIRKLTKRDTFVEFDQVMNLLF---WIP 367
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + P + KP PLWTGKQ++S I PK G + D+ S +
Sbjct: 368 DWDGVVPQPAVLKPKPLWTGKQIVSLCI----PK-------GIFMQRFDDQNPITSPK-- 414
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
D + I GE++ G++DKK G+T GL+H + G + + L K+
Sbjct: 415 ------DNGMLIAKGEVIYGVVDKKTVGATAGGLIHTIMREKGPQICCNFFGNLQKVVNY 468
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + + T I +A+ E A L +P + L+E
Sbjct: 469 WLLHNGFSIGIGDTIADAATMKDITNTIAEAKNKVQEIILEAQANKLAPEPGMT---LRE 525
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
+ F + R D + ++ L E NN++ MV +G+KGS +N
Sbjct: 526 S------FEHNVSRVLNQARDTAGRSA-EMSLKE-------LNNVKQMVIAGSKGSFINI 571
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EGKR R+LP F + SP + GF++ ++ G+ PQEFFFH M
Sbjct: 572 SQMSACVGQQIVEGKRIPFGFQDRSLPHFTKDDHSPESKGFIENSYLRGLTPQEFFFHAM 631
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTK 431
AGREGLIDTAVKT+ +GY+QR LVK LE + V YD T R+S +IQ +YGEDGLD T+
Sbjct: 632 AGREGLIDTAVKTAETGYIQRRLVKALEDVMVQYDGTTRNSLGDVIQFVYGEDGLDGTQ 690
>gi|316997013|dbj|BAJ52634.1| RNA polymerase II largest subunit [Ephydatia fluviatilis]
Length = 1146
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 142/416 (34%), Positives = 213/416 (51%), Gaps = 30/416 (7%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAE L+ V L P+ P+ G++QD + + K++ RD FL + MNL+ + +
Sbjct: 11 KAELQELLMVHRNILTPQSNQPVMGIVQDSLTAATKMTKRDVFLEKESVMNLL---MWLP 67
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + + P I KP LWTGKQ+ S +I P + +I+ D + G
Sbjct: 68 SWDGKVPRPAILKPKQLWTGKQIFSLII----PSNINMIKTHSTHPDDEDDGPYKFISPG 123
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
DT V + +G+LL GIL K G+ L+H V+ G E A + +
Sbjct: 124 ------DTKVIVENGDLLCGILSKDTLGNKGGSLMHLVFLEKGVEVARDFYGSIQTVVNN 177
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
YL G ++G+ D + + + K I +A+ E A L+ P + L++
Sbjct: 178 YLLLEGHSIGIGDTIADKVTYDEIQKTIRQAKFDVIEVIKKAHNNELEPTP---GNTLRQ 234
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
F Q++R DK T + Q L + NN + MV +G+KGS +N
Sbjct: 235 T------FENQVNRILNEARDK-TGSSAQKSLSD-------FNNFKVMVSAGSKGSKINI 280
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+ +GQ +EGKR RTLP F+ + P + GFV+ ++ G+ P EF+FH M
Sbjct: 281 SQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDFGPESKGFVENSYLAGLTPTEFYFHAM 340
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
GREGLIDTAVKTS +GY+QR L+K +EGL VHYD T+R+S+ +IQ+ YGEDG+D
Sbjct: 341 GGREGLIDTAVKTSETGYIQRRLIKAMEGLMVHYDGTIRNSNKQMIQLRYGEDGMD 396
Score = 127 bits (320), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 134/452 (29%), Positives = 215/452 (47%), Gaps = 52/452 (11%)
Query: 572 ANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSM 631
A+PGE VG LAAQS+GEP+TQMTLNTFH+AG NVTLG+PRL+EI+ + +K KTPS+
Sbjct: 583 AHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINV-SKRPKTPSL 641
Query: 632 EIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEP-HMNYQMKFCFIPA 690
I FL + K A R + RI L KV + P+P H F+
Sbjct: 642 TI-FLKG--QAAKGAERCKDVLCRIEYT-TLRKVTANTAIYYDPDPQHTVIAEDQEFV-- 695
Query: 691 HMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGE 750
+Y + P++I +L LE+ R K + +E Q+ + V GE
Sbjct: 696 SIYYEMPDFDPTRI-----SPWLLRLEL---DRKRMTDKKLTME----QIAEKVSSHFGE 743
Query: 751 GAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNTSN 810
D++ D + + +V +D + EDEE M ++ EDD
Sbjct: 744 ------------DLNCMYTDDNSEKLALRIRVLSSDDGKTQG-EDEE-MVDKMEDD---- 785
Query: 811 IGERFKIEFRDSTNVFVKDVVNQ--HNIVHKYSYDKKNHMWCKLLFLPSNLFEEKESKHL 868
+ R + D+ Q I Y + +++ F+ + + +
Sbjct: 786 ------MFLRCLETNLLSDMALQGIEQIAKVYMHYPTQDSKKRIIVNDEGQFKAIQ-EWI 838
Query: 869 LKTDGIN-VNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 927
L+TDG+N + +S+ +D + N I + S GIEA + + +E+ +V + G V
Sbjct: 839 LETDGVNLIRVLSEPS--VDPVRTTSNHIVEIFSVLGIEAVRKAVEKELHHVISFDGSYV 896
Query: 928 DPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRA 986
+ RHL+L+ D MT G +A+ R+G+ R + + + +FE ++ + +A++ D +R
Sbjct: 897 NYRHLALLCDIMTCRGHLMAITRHGVNRQDVGALMRCSFEETVDILVEAAVHCEVDKMRG 956
Query: 987 PSARVMLGQECRQGTGLFQ-LRNREKKKKKVE 1017
S +MLGQ + GTG L + EK K +E
Sbjct: 957 VSECIMLGQIHKGGTGAVDLLLDAEKCKHGME 988
>gi|260943858|ref|XP_002616227.1| hypothetical protein CLUG_03468 [Clavispora lusitaniae ATCC 42720]
gi|238849876|gb|EEQ39340.1| hypothetical protein CLUG_03468 [Clavispora lusitaniae ATCC 42720]
Length = 1402
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 151/422 (35%), Positives = 223/422 (52%), Gaps = 39/422 (9%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S +AE S + V Q + P+ P+ G++QD + K++LRD F+ + MN++Y
Sbjct: 453 SQETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIEYEQVMNMLYW- 511
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGS 128
I N + PP I KP PLW+GKQ+LS I PK G L D S
Sbjct: 512 --IPNWDGVIPPPAIIKPKPLWSGKQILSMAI----PK-------GIHLQRFDDGNDMLS 558
Query: 129 TQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAK 188
+ D + I GE++ G++DKK G+T GL+H V G++ L S + K
Sbjct: 559 PK--------DKGILIVDGEIIFGVVDKKTVGATGGGLIHTVMREKGSQVCAQLFSSIQK 610
Query: 189 LFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISS 248
+ +L GF++G+ D + ++ R T I +A++ E +A L+ +P +
Sbjct: 611 VVNYWLLHNGFSIGIGDTIADKDTMRDVTTTIQEAKQKVQEIIMDAQQNRLEPEPGMT-- 668
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGS 308
L+E++ + + +V N + NN++ MV SG+KGS
Sbjct: 669 -LRESF--------------EHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVTSGSKGS 713
Query: 309 TVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFF 368
+N Q+S +GQ +EGKR + RTLP F + SP + GFV+ ++ G+ PQEFF
Sbjct: 714 FINISQMSACVGQQIVEGKRIPFGFADRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFF 773
Query: 369 FHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
FH MAGREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S +IQ +YGEDG+D
Sbjct: 774 FHAMAGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFVYGEDGID 833
Query: 429 VT 430
T
Sbjct: 834 GT 835
Score = 97.4 bits (241), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 69/98 (70%), Gaps = 1/98 (1%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
S+ +PGE VGV+AAQSIGEP+TQMTLNTFH+AG NVTLG+PRL+EIL +A K IKTP
Sbjct: 1016 SIVHPGEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVA-KNIKTP 1074
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKI 667
++ + P++ +KA + ++ T+ +V +I
Sbjct: 1075 ALTVYLDPEIASDIEKAKVVQSAIEHTTLKNVTSATEI 1112
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 2/97 (2%)
Query: 857 SNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREV 916
S F +K+ + +L+TDG+N+ + + D ++ Y N+ + S GIEA + +E+
Sbjct: 1255 SGEFSQKQ-EWVLETDGVNLAEVIAVPGV-DSSRTYSNNFIEILSVLGIEATRSALYKEI 1312
Query: 917 KNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
NV A G V+ RH++L+ D MT G +A R+GI
Sbjct: 1313 LNVIAFDGSYVNYRHMALLVDVMTSRGHLMARTRHGI 1349
>gi|341858952|gb|AEK97386.1| ribosomal polymerase II largest subunit [Beauveria pseudobassiana]
Length = 952
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 149/424 (35%), Positives = 220/424 (51%), Gaps = 54/424 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + + P+ PL G++QD + KL RDTF+ + NL+ L +
Sbjct: 414 RAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDKELVQNLM---LWVP 470
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVI---INLTPKDKVIIRHGELLSGILDKKQFGST 129
N + P I KP P WTGKQ++S VI I+L K+ DK
Sbjct: 471 NWDGVIPQPAILKPRPRWTGKQIISMVIPPEISLYSKE--------------DK------ 510
Query: 130 QYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L + D + I+ GEL+ G+L KK G+ G++H ++ G E A++ L+ + ++
Sbjct: 511 ---LDNPRHDAGLLIQSGELMYGLLKKKSVGAAAGGIIHLCYNELGPEGAMAFLNGVQQV 567
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKAR----RLGTEAACNALGLPLDTDPEI 245
T +L GF++G+ D + + K + I++ + RL +A N L
Sbjct: 568 VTYWLLNTGFSIGIGDTVPDKATINKIQEHIDEHKAEVARLTAQATANEL---------- 617
Query: 246 ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGA 305
EA + RA + + L+ + + + L + +NN M +SG+
Sbjct: 618 ------EALPGM-NVRATFENKVSMALNMARDQAGTSTM-KSLKD---SNNAVTMADSGS 666
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS++N Q++ L+GQ +EGKR RTLP F + SP A GFV+ ++ G+ P
Sbjct: 667 KGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPT 726
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EFFFH MAGREGLIDTAVKT+ +GY+QR LVK LE L+ YD TVR+S +IQ LYGED
Sbjct: 727 EFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDVIQFLYGED 786
Query: 426 GLDV 429
GLD
Sbjct: 787 GLDA 790
>gi|111278795|gb|ABH09095.1| RNA polymerase II largest subunit [Exophiala dermatitidis]
Length = 1000
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 144/419 (34%), Positives = 217/419 (51%), Gaps = 43/419 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE + L V + P+ PL G++QD + K+ RD FLTR + MN++ L +
Sbjct: 424 RAELANLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDIFLTREQVMNIM---LWVP 480
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ P I KP P WTGKQ++S V+ P+ + R LD K G Y
Sbjct: 481 EWDGVIPQPAIIKPRPRWTGKQMISMVL----PRALNLER--------LDAK--GEDPYV 526
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ DT + + G L+ G+ KK G++ G++H +++ G E A++ + +
Sbjct: 527 PAN---DTGLMVLEGHLMFGLFSKKFVGTSAGGVIHTIFNEFGHEAAMAFFNGAQHVVNY 583
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + E RK +++++ ++ E A L+ P + Q E
Sbjct: 584 WLLHNGFSIGIGDTVPDPETVRKIQEVVDEKKKEVEEITIRAYKEDLEPSPGMNVRQTFE 643
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPA---NNLQFMVESGAKGST 309
+ KV N +NQ G + NN M +G+KGST
Sbjct: 644 S--------------------KVMNALNQARDQAGAVTENSLKDLNNAITMARAGSKGST 683
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q++ ++GQ +EGKR RTLP F + S + GFV+ ++ G+ P EFFF
Sbjct: 684 INIAQMTAIVGQQAVEGKRIPFGFKYRTLPHFAKDDYSAPSRGFVENSYLRGLTPTEFFF 743
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
H MAGREGLIDTAVKT+ +GY+QR LVK LE +TV YD TVRDS +++Q +YGEDGLD
Sbjct: 744 HAMAGREGLIDTAVKTAETGYIQRRLVKALEEVTVKYDSTVRDSRGNIVQFIYGEDGLD 802
>gi|324120530|dbj|BAJ78656.1| RNA polymerase II largest subunit [Aposthonia japonica]
Length = 1697
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 147/432 (34%), Positives = 219/432 (50%), Gaps = 34/432 (7%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L Q + P+ P+ G++QD +++ K++ RD FL + + MN+ L L
Sbjct: 483 RAEVENLHVTPRQIITPQANQPVMGIVQDTLVAVRKMTKRDVFLEKEQMMNI----LMFL 538
Query: 73 NTEIRTLP-PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQY 131
+P P I KP PLWTGKQV S +I P + +IR D+ +
Sbjct: 539 PIWDGKMPQPAILKPKPLWTGKQVFSLII----PGNVNLIRTHSTHPDDEDEGPYKWISP 594
Query: 132 GLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFT 191
G DT V + HGEL+ GIL KK G++ L+H + G + + +
Sbjct: 595 G------DTKVMVEHGELVMGILCKKTLGTSAGSLLHICFLELGHDVCGQFYGNIQTVIN 648
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQ 251
+L G ++G+ D + + + K I KA+ E A + L+ P + L+
Sbjct: 649 NWLLYEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTP---GNTLR 705
Query: 252 EAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVN 311
+ F Q++R DK + + L E NNL+ MV +G+KGS +N
Sbjct: 706 QT------FENQVNRILNDARDKTGGSAKK-----SLTE---YNNLKAMVVAGSKGSNIN 751
Query: 312 TMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHC 371
Q+ +GQ +EGKR RTLP F+ + P + GFV+ ++ G+ P EFFFH
Sbjct: 752 ISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHA 811
Query: 372 MAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL--DV 429
M GREGLIDTAVKT+ +GY+QR L+K +E + VHYD TVR+S LIQ+ YGEDGL +
Sbjct: 812 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGET 871
Query: 430 TKRQYLTDKQFS 441
+ QY+ + S
Sbjct: 872 VEFQYIQTVKLS 883
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 132/451 (29%), Positives = 212/451 (47%), Gaps = 51/451 (11%)
Query: 572 ANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSM 631
NPGE VG LAAQS+GEP+TQMTLNTFHFAG NVTLG+PRL+EI+ ++ + K PS+
Sbjct: 1052 CNPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKRP-KAPSL 1110
Query: 632 EIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPH---MNYQMKFCFI 688
+ + +KA + + T L KV + P+P + +F
Sbjct: 1111 TVFLTGAAARDAEKAKNVLCRLEHTT----LRKVTANTAIYYDPDPQNTVITEDQEF--- 1163
Query: 689 PAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDE 748
++Y + P++I R IE R +M D E
Sbjct: 1164 -VNVYYEMPDFDPTRISPWLLR----------------------IELDRKRMTDKKLTME 1200
Query: 749 GEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNT 808
+ AE A G D++ D + + ++ +DN F+ DEE ++ EDD
Sbjct: 1201 -QIAEKINAGFGD-DLNCIFNDDNAEKLVLRIRIMNSDDNKFQ---DEEETVDKMEDDMF 1255
Query: 809 SNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNLFEEKESKHL 868
E + D T ++ + + +H D K K + + N + ++ L
Sbjct: 1256 LRCIEANMLS--DMTLQGIEAIAKVY--MHLPQTDAK-----KRIIITDNGEFKAIAEWL 1306
Query: 869 LKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 928
L+TDG ++ + R + D + + NDI + S GIEA + + +E+ V + YG+ V+
Sbjct: 1307 LETDGTSMMKVLSERDV-DPVRTFSNDICEIFSVLGIEAVRKSVEKEMNAVLSFYGLYVN 1365
Query: 929 PRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAP 987
RHL+L+ D MT G +A+ R+GI R + + + +FE ++ + A+ D +R
Sbjct: 1366 YRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGV 1425
Query: 988 SARVMLGQECRQGTGLFQ-LRNREKKKKKVE 1017
S +++GQ R GTG F L + EK K +E
Sbjct: 1426 SENIIMGQLPRLGTGAFDLLLDAEKCKAGIE 1456
>gi|341858974|gb|AEK97397.1| ribosomal polymerase II largest subunit [Beauveria amorpha]
Length = 954
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 149/424 (35%), Positives = 220/424 (51%), Gaps = 54/424 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + + P+ PL G++QD + KL RDTF+ + NL+ L +
Sbjct: 416 RAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDKELVQNLM---LWVP 472
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVI---INLTPKDKVIIRHGELLSGILDKKQFGST 129
N + P I KP P WTGKQ++S VI I+L K+ DK
Sbjct: 473 NWDGVIPQPAILKPRPRWTGKQIISMVIPPEISLYSKE--------------DK------ 512
Query: 130 QYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L + D + I+ GEL+ G+L KK G+ G++H ++ G E A++ L+ + ++
Sbjct: 513 ---LDNPRHDAGLLIQSGELMYGLLKKKSVGAAPGGIIHLCYNELGPEGAMAFLNGVQQV 569
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKAR----RLGTEAACNALGLPLDTDPEI 245
T +L GF++G+ D + + K + I++ + RL +A N L
Sbjct: 570 VTYWLLNTGFSIGIGDTVPDKATINKIQEHIDEHKAEVARLTAQATANEL---------- 619
Query: 246 ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGA 305
EA + RA + + L+ + + + L + +NN M +SG+
Sbjct: 620 ------EALPGM-NVRATFENKVSMALNMARDQAGTSTM-KSLKD---SNNAVTMADSGS 668
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS++N Q++ L+GQ +EGKR RTLP F + SP A GFV+ ++ G+ P
Sbjct: 669 KGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPS 728
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EFFFH MAGREGLIDTAVKT+ +GY+QR LVK LE L+ YD TVR+S +IQ LYGED
Sbjct: 729 EFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDVIQFLYGED 788
Query: 426 GLDV 429
GLD
Sbjct: 789 GLDA 792
>gi|397135854|gb|AFO11422.1| RNA polymerase I, partial [Candida abiesophila]
Length = 870
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 137/420 (32%), Positives = 217/420 (51%), Gaps = 45/420 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S + V Q + P+ P+ G++QD + K++ RD F+ + MN+ Y I
Sbjct: 311 RAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTXRDNFIEYDQVMNMCY---WIP 367
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + P I+KP PLW+GKQVLS I GI ++ GS
Sbjct: 368 DWDGIVPQPCIFKPKPLWSGKQVLSLCI----------------SKGIFLQRLDGS---- 407
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ + D+ + I +GE++ G+++K G + GL+H G+ + + K+
Sbjct: 408 -MLSPKDSGMLILNGEIMFGVVNKATVGPSAGGLIHTTMREKGSTVCAKMFGNIQKVVNY 466
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + E + T+ I +A+ E + + +++
Sbjct: 467 WLLHNGFSIGIGDAIADPETMKTITETIREAK-------------------EKVQNVIKD 507
Query: 253 AYASI--PQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTV 310
A A++ P+ I ++ + K+ N +NN++ MV +G+KGS +
Sbjct: 508 AQANLLEPEPGMTIRESFEQKVSKILNEARDSAGKSAETSLKDSNNVKQMVTAGSKGSYI 567
Query: 311 NTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFH 370
N Q+S +GQ +EG+R + RTLP F + S + GFV+ ++ G+ PQEFFFH
Sbjct: 568 NISQMSACVGQQIVEGRRIHFGFADRTLPHFTKDDYSAESKGFVENSYLRGLTPQEFFFH 627
Query: 371 CMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVT 430
MAGREGLIDTAVKT+ +GY+QR L+K LE + VHYD T R+S +IQ LYGEDGLD T
Sbjct: 628 AMAGREGLIDTAVKTAETGYIQRRLLKALEDIMVHYDGTTRNSLGDVIQFLYGEDGLDAT 687
>gi|341858946|gb|AEK97383.1| ribosomal polymerase II largest subunit [Beauveria pseudobassiana]
gi|341858948|gb|AEK97384.1| ribosomal polymerase II largest subunit [Beauveria pseudobassiana]
gi|341858950|gb|AEK97385.1| ribosomal polymerase II largest subunit [Beauveria pseudobassiana]
gi|341858954|gb|AEK97387.1| ribosomal polymerase II largest subunit [Beauveria pseudobassiana]
gi|341858956|gb|AEK97388.1| ribosomal polymerase II largest subunit [Beauveria pseudobassiana]
gi|341858960|gb|AEK97390.1| ribosomal polymerase II largest subunit [Beauveria pseudobassiana]
gi|341858962|gb|AEK97391.1| ribosomal polymerase II largest subunit [Beauveria pseudobassiana]
Length = 954
Score = 220 bits (560), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 149/424 (35%), Positives = 220/424 (51%), Gaps = 54/424 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + + P+ PL G++QD + KL RDTF+ + NL+ L +
Sbjct: 416 RAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDKELVQNLM---LWVP 472
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVI---INLTPKDKVIIRHGELLSGILDKKQFGST 129
N + P I KP P WTGKQ++S VI I+L K+ DK
Sbjct: 473 NWDGVIPQPAILKPRPRWTGKQIISMVIPPEISLYSKE--------------DK------ 512
Query: 130 QYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L + D + I+ GEL+ G+L KK G+ G++H ++ G E A++ L+ + ++
Sbjct: 513 ---LDNPRHDAGLLIQSGELMYGLLKKKSVGAAAGGIIHLCYNELGPEGAMAFLNGVQQV 569
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKAR----RLGTEAACNALGLPLDTDPEI 245
T +L GF++G+ D + + K + I++ + RL +A N L
Sbjct: 570 VTYWLLNTGFSIGIGDTVPDKATINKIQEHIDEHKAEVARLTAQATANEL---------- 619
Query: 246 ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGA 305
EA + RA + + L+ + + + L + +NN M +SG+
Sbjct: 620 ------EALPGM-NVRATFENKVSMALNMARDQAGTSTM-KSLKD---SNNAVTMADSGS 668
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS++N Q++ L+GQ +EGKR RTLP F + SP A GFV+ ++ G+ P
Sbjct: 669 KGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPT 728
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EFFFH MAGREGLIDTAVKT+ +GY+QR LVK LE L+ YD TVR+S +IQ LYGED
Sbjct: 729 EFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDVIQFLYGED 788
Query: 426 GLDV 429
GLD
Sbjct: 789 GLDA 792
>gi|341858972|gb|AEK97396.1| ribosomal polymerase II largest subunit [Beauveria amorpha]
gi|341858976|gb|AEK97398.1| ribosomal polymerase II largest subunit [Beauveria amorpha]
gi|341858978|gb|AEK97399.1| ribosomal polymerase II largest subunit [Beauveria amorpha]
gi|341858980|gb|AEK97400.1| ribosomal polymerase II largest subunit [Beauveria amorpha]
Length = 954
Score = 220 bits (560), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 149/424 (35%), Positives = 220/424 (51%), Gaps = 54/424 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + + P+ PL G++QD + KL RDTF+ + NL+ L +
Sbjct: 416 RAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDKELVQNLM---LWVP 472
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVI---INLTPKDKVIIRHGELLSGILDKKQFGST 129
N + P I KP P WTGKQ++S VI I+L K+ DK
Sbjct: 473 NWDGVIPQPAILKPRPRWTGKQIISMVIPPEISLYSKE--------------DK------ 512
Query: 130 QYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L + D + I+ GEL+ G+L KK G+ G++H ++ G E A++ L+ + ++
Sbjct: 513 ---LDNPRHDAGLLIQSGELMYGLLKKKSVGAAPGGIIHLCYNELGPEGAMAFLNGVQQV 569
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKAR----RLGTEAACNALGLPLDTDPEI 245
T +L GF++G+ D + + K + I++ + RL +A N L
Sbjct: 570 VTYWLLNTGFSIGIGDTVPDKATINKIQEHIDEHKAEVARLTAQATANEL---------- 619
Query: 246 ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGA 305
EA + RA + + L+ + + + L + +NN M +SG+
Sbjct: 620 ------EALPGM-NVRATFENKVSMALNMARDQAGTSTM-KSLKD---SNNAVTMADSGS 668
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS++N Q++ L+GQ +EGKR RTLP F + SP A GFV+ ++ G+ P
Sbjct: 669 KGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPS 728
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EFFFH MAGREGLIDTAVKT+ +GY+QR LVK LE L+ YD TVR+S +IQ LYGED
Sbjct: 729 EFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDVIQFLYGED 788
Query: 426 GLDV 429
GLD
Sbjct: 789 GLDA 792
>gi|341858982|gb|AEK97401.1| ribosomal polymerase II largest subunit [Beauveria sungii]
gi|341858984|gb|AEK97402.1| ribosomal polymerase II largest subunit [Beauveria sungii]
gi|341858986|gb|AEK97403.1| ribosomal polymerase II largest subunit [Beauveria sungii]
gi|341858988|gb|AEK97404.1| ribosomal polymerase II largest subunit [Beauveria sungii]
gi|341858992|gb|AEK97406.1| ribosomal polymerase II largest subunit [Beauveria sungii]
gi|341858994|gb|AEK97407.1| ribosomal polymerase II largest subunit [Beauveria sungii]
Length = 954
Score = 220 bits (560), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 149/424 (35%), Positives = 220/424 (51%), Gaps = 54/424 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + + P+ PL G++QD + KL RDTF+ + NL+ L +
Sbjct: 416 RAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDKELVQNLM---LWVP 472
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVI---INLTPKDKVIIRHGELLSGILDKKQFGST 129
N + P I KP P WTGKQ++S VI I+L K+ DK
Sbjct: 473 NWDGVIPQPAILKPRPRWTGKQIISMVIPPEISLYSKE--------------DK------ 512
Query: 130 QYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L + D + I+ GEL+ G+L KK G+ G++H ++ G E A++ L+ + ++
Sbjct: 513 ---LDNPRHDAGLLIQSGELMYGLLKKKSVGAAAGGIIHLCYNELGPEGAMAFLNGVQQV 569
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKAR----RLGTEAACNALGLPLDTDPEI 245
T +L GF++G+ D + + K + I++ + RL +A N L
Sbjct: 570 VTYWLLNTGFSIGIGDTVPDKATINKIQEHIDEHKAEVARLTAQATANEL---------- 619
Query: 246 ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGA 305
EA + RA + + L+ + + + L + +NN M +SG+
Sbjct: 620 ------EALPGM-NVRATFENKVSMALNMARDQAGTSTM-KSLKD---SNNAVTMADSGS 668
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGS++N Q++ L+GQ +EGKR RTLP F + SP A GFV+ ++ G+ P
Sbjct: 669 KGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPT 728
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EFFFH MAGREGLIDTAVKT+ +GY+QR LVK LE L+ YD TVR+S +IQ LYGED
Sbjct: 729 EFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDVIQFLYGED 788
Query: 426 GLDV 429
GLD
Sbjct: 789 GLDA 792
>gi|241959608|ref|XP_002422523.1| DNA-directed RNA polymerase II subunit, putative [Candida
dubliniensis CD36]
gi|223645868|emb|CAX40531.1| DNA-directed RNA polymerase II subunit, putative [Candida
dubliniensis CD36]
Length = 1735
Score = 220 bits (560), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 152/419 (36%), Positives = 224/419 (53%), Gaps = 39/419 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S + V Q + P+ P+ G++QD + K++LRD F+ + MN+ Y I
Sbjct: 498 RAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIEYDQVMNMCY---WIP 554
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N + PP + KP PLWTGKQ+LS I PK H + G D
Sbjct: 555 NWDGVIPPPAVVKPKPLWTGKQLLSLAI----PKGI----HLQRFDGGRD---------- 596
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ + DT + I GE++ G++DKK G+T GL+H V G + L S + K+
Sbjct: 597 -LLSPKDTGMLIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPKVCAELFSSIQKVVNY 655
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + + R TK I +A++ E +A L+ +P + L+E
Sbjct: 656 WLLHNGFSIGIGDTIADAQTMRDVTKTIQEAKQKVQEIIIDAQHNKLEPEPGMT---LRE 712
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
+ F + R D + ++ L + NN++ MV SG+KGS +N
Sbjct: 713 S------FEHNVSRVLNQARDTAGRSA-EMSLKD-------LNNVKQMVTSGSKGSFINI 758
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EGKR R+LP F + SP + GFV+ ++ G+ PQEFFFH M
Sbjct: 759 SQMSACVGQQIVEGKRIPFGFGDRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAM 818
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTK 431
AGREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S +IQ +YGEDG+D T+
Sbjct: 819 AGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFIYGEDGIDGTQ 877
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 137/445 (30%), Positives = 207/445 (46%), Gaps = 64/445 (14%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
S+ +PGE VGV+AAQSIGEP+TQMTLNTFH+AG NVTLG+PRL+EIL +A K IKTP
Sbjct: 1057 SIVHPGEMVGVVAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVA-KNIKTP 1115
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCFIP 689
+M + P++ +KA + ++ T L+ V + P+P ++ +
Sbjct: 1116 AMTVYLDPEVASDIEKAKIVQSAIEHTT----LKNVTSSAEIYYDPDPRTTV-IEDDYDT 1170
Query: 690 AHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEG 749
Y K + ID + +L LE+ AK + L + Q+ + + + G
Sbjct: 1171 VEAYFAIPDQKVEETIDK-QSPWLLRLELDRAKMLDKQL-------TMAQVAEKISQNFG 1222
Query: 750 E------GAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSERE 803
E + A + R V D + +EDA + EED ++ +R
Sbjct: 1223 EDLFVIWSDDTADKLIIRCRVVRDPKSLDEDA-------DAEED----------QILKRI 1265
Query: 804 EDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNLFEEK 863
E +I R T VF+ QH + H P E K
Sbjct: 1266 EAHMLESISLR---GIPGITRVFMM----QHKVSH-----------------PDETGEFK 1301
Query: 864 ESKH-LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 922
+ K +L+TDG+N+ + + D + Y ND + S GIEA + +E+ NV A
Sbjct: 1302 QGKEWVLETDGVNLADVMAVPGV-DSARTYSNDFIEVLSVLGIEATRSSLYKEILNVIAF 1360
Query: 923 YGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGRE 981
G V+ RH++L+ D MT G +A+ R+GI R + + + +FE +E + A+
Sbjct: 1361 DGSYVNYRHMALLVDVMTSRGHLMAITRHGINRSDTGALMRCSFEETVEILLDAAAAAEL 1420
Query: 982 DSLRAPSARVMLGQECRQGTGLFQL 1006
D + S VMLGQ GTG F L
Sbjct: 1421 DDCKGISENVMLGQMAPLGTGSFDL 1445
>gi|123979344|gb|ABM81497.1| RNA polymerase II largest subunit [Rhizocarpon superficiale]
Length = 991
Score = 220 bits (560), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 140/416 (33%), Positives = 215/416 (51%), Gaps = 40/416 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE + L V + P+ PL G++QD + K+ RD FLT+ + MN++ L +
Sbjct: 424 RAEVNQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFLTKEQVMNIL---LWVP 480
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + P I+KP P+WTGKQ++S VI P++ ++R L+ G
Sbjct: 481 DWDGVIPHPAIFKPRPMWTGKQIISLVI----PENLSLVRPSSEGFSPLNDDGLG----- 531
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
VH G+L+ G+ +KK G++ G++H V++ G E A+ + +
Sbjct: 532 -VHG----------GQLMYGLFNKKSVGASGGGIIHIVFNEKGPEAAMKFFNGAQTVVNY 580
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L R GF++G+ D + + ++ +NK + E NA L+ P +
Sbjct: 581 WLLRNGFSIGIGDTIPDRNTIQQIEDAVNKQKEDVAEITRNATENELEPLPGM------- 633
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
R + + L+K ++ V E L + NN M SG+KGST+N
Sbjct: 634 ------NVRETFESKVSKALNKARDDAGTVT-EESLKD---LNNAIQMARSGSKGSTINI 683
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q++ + GQ +EGKR RTLP F + SP + GFV+ ++ G+ P EFFFH M
Sbjct: 684 SQMTAVAGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAM 743
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
AGREGLIDTAVKT+ +GY+QR LVK LE + YD TVR+S ++Q +YGEDGLD
Sbjct: 744 AGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLD 799
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,695,166,446
Number of Sequences: 23463169
Number of extensions: 679818803
Number of successful extensions: 3133415
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 10442
Number of HSP's successfully gapped in prelim test: 4815
Number of HSP's that attempted gapping in prelim test: 2874593
Number of HSP's gapped (non-prelim): 134356
length of query: 1020
length of database: 8,064,228,071
effective HSP length: 153
effective length of query: 867
effective length of database: 8,769,330,510
effective search space: 7603009552170
effective search space used: 7603009552170
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 82 (36.2 bits)