BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16767
(1020 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O95602|RPA1_HUMAN DNA-directed RNA polymerase I subunit RPA1 OS=Homo sapiens GN=POLR1A
PE=1 SV=2
Length = 1720
Score = 815 bits (2106), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/1144 (42%), Positives = 659/1144 (57%), Gaps = 155/1144 (13%)
Query: 2 DGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLT 57
DG NA S +AEA L QYLVPKDG PL+GLIQDH++SGA ++ R F T
Sbjct: 590 DGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFT 649
Query: 58 RAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELL 117
R YM LVY+ L ++ L P+I KP PLWTGKQV+ST++IN+ P+D + + L
Sbjct: 650 REHYMELVYRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLN----L 705
Query: 118 SG---ILDKKQFGSTQYGLV----HAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAV 170
SG I K T + ++ ++ V IR GELL G+LDK +GS+ YGLVH
Sbjct: 706 SGKAKITGKAWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCC 765
Query: 171 WDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGTE 229
++ +G E + +L+CLA+LFT YLQ GFTLGV DILV+ + D KR +II ++ G +
Sbjct: 766 YEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGPQ 825
Query: 230 AACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCLPEGL 288
A AL LP + + + Q+A+ Q ID ++K ++ +N IN+ C+P GL
Sbjct: 826 AVRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGL 885
Query: 289 IEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSP 348
FP N+LQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PYE +P
Sbjct: 886 HRQFPENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTP 945
Query: 349 RAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDM 408
RAGGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V YD+
Sbjct: 946 RAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDL 1005
Query: 409 TVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLA 468
TVRDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I + + +L + A
Sbjct: 1006 TVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHLHEVLSRADPKKA 1065
Query: 469 LLLLLTFK--SSGKPNFIF-------------------------SPHRTKFTMDLLEQWY 501
L K S PN + R+ T ++L WY
Sbjct: 1066 LHHFRAIKKWQSKHPNTLLRRGAFLSYSQKIQEAVKALKLESENRNGRSPGTQEMLRMWY 1125
Query: 502 QLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK---GRTDASH--- 555
+LD+++R+KY+KK ACP P +S ++PD +F S+SE V Y++ +T+ S+
Sbjct: 1126 ELDEESRRKYQKKAAACPDPSLSVWRPDIYFASVSETFETKVDDYSQEWAAQTEKSYEKS 1185
Query: 556 ---VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGI 612
+D+ ++ K SL PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVTLGI
Sbjct: 1186 ELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGI 1245
Query: 613 PRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKE--W 670
PRLREILM+A+ IKTP M +P L + K K+ L K +TR+ + +VL+K+ ++E
Sbjct: 1246 PRLREILMVASANIKTPMMSVPVL-NTKKALKRVKSLKKQLTRVCLGEVLQKIDVQESFC 1304
Query: 671 LEISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKR--AAQGL 728
+E YQ++F F+P Y+ + ++P I+ E +F K L +I K+ A
Sbjct: 1305 MEEKQNKFQVYQLRFQFLPHAYYQQEKCLRPEDILRFMETRFFKLLMESIKKKNNKASAF 1364
Query: 729 KNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGR---------------VDVSSDE-ERDE 772
+N+N +R + D+ D+ GE LGR VD ++E + D
Sbjct: 1365 RNVN---TRRATQRDL-DNAGE--------LGRSRGEQEGDEEEEGHIVDAEAEEGDADA 1412
Query: 773 EDAVQSHKKVN----------------------QEEDNDFEE------PEDEERMSEREE 804
DA + K+ QEE N E +DEE EE
Sbjct: 1413 SDAKRKEKQEEEVDYESEEEEEREGEENDDEDMQEERNPHREGARKTQEQDEEVGLGTEE 1472
Query: 805 DDNTSNIGERFK-------IEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC------- 850
D + + + + + ++ V+ V H + Y YD + +WC
Sbjct: 1473 DPSLPALLTQPRKPTHSQEPQGPEAMERRVQAVREIHPFIDDYQYDTEESLWCQVTVKLP 1532
Query: 851 --KLLFLPSNLF-------------------------EEKESKHLLKTDGINVNFISQYR 883
K+ F S+L + E + +L T+GIN+ + +Y
Sbjct: 1533 LMKINFDMSSLVVSLAHGAVIYATKGITRCLLNETTNNKNEKELVLNTEGINLPELFKYA 1592
Query: 884 HLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSG 943
+LDL +LY NDIH +A+TYGIEAA RVI +E+K+VFAVYGI VDPRHLSLVADYM G
Sbjct: 1593 EVLDLRRLYSNDIHAIANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEG 1652
Query: 944 TYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGL 1003
Y +NR GIR N S +Q+MTFE + ++QA+M G D LR+PSA +++G+ R GTGL
Sbjct: 1653 VYKPLNRFGIRSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVRGGTGL 1712
Query: 1004 FQLR 1007
F+L+
Sbjct: 1713 FELK 1716
>sp|O35134|RPA1_MOUSE DNA-directed RNA polymerase I subunit RPA1 OS=Mus musculus GN=Polr1a
PE=1 SV=2
Length = 1717
Score = 808 bits (2087), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/1130 (42%), Positives = 659/1130 (58%), Gaps = 135/1130 (11%)
Query: 1 MDGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA S +AEA L QYLVPKDG PL+GLIQDH++SGA +++R F
Sbjct: 596 FDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFF 655
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL 116
TR +YM LVY+ L ++ PP I KP PLWTGKQV+ST++IN+ P+D +
Sbjct: 656 TREQYMELVYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDYAPLN---- 711
Query: 117 LSGILDKKQFGSTQYGL----------VHAVWDTHVTIRHGELLSGILDKKQFGSTQYGL 166
LSG K + GS + ++ ++ V IR GELL G+LDK +GS+ YGL
Sbjct: 712 LSG---KAKIGSKAWVKEKPRPIPDFDPDSMCESQVIIREGELLCGVLDKAHYGSSAYGL 768
Query: 167 VHAVWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARR 225
VH ++ +G E + +L+CLA+LFT YLQ GFTLGV DILV+ D R +II ++ +
Sbjct: 769 VHCCYEIYGGETSGRVLTCLARLFTAYLQLYRGFTLGVEDILVKPNADVVRQRIIEESTQ 828
Query: 226 LGTEAACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCL 284
G +A AL LP + I + Q+A+ S Q ID ++K ++ +N IN+ C+
Sbjct: 829 CGPQAVKAALSLPETASCDEIQGKWQDAHLSKDQRDFNMIDMKFKEEVNHYSNEINKACM 888
Query: 285 PEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPY 344
P GL FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PY
Sbjct: 889 PLGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPY 948
Query: 345 EVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTV 404
E +PRAGGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL +
Sbjct: 949 EFTPRAGGFVTGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVI 1008
Query: 405 HYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKK-- 462
YD+TVRDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I K + +L +
Sbjct: 1009 QYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLAGNYEVIMKSKHLHEVLSRAD 1068
Query: 463 ---------------HPLSLALLLLLTFKSSGKP--------NFIFSPH--RTKFTMDLL 497
H S ALL F S + N S R+ T +L
Sbjct: 1069 PQKVLGHIKAIKKWHHKHSGALLRKGAFLSFSQKIQAAVKALNLKGSIQNGRSPETQQML 1128
Query: 498 EQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK---GRTDAS 554
+ WY LD+++R KY+K+ CP P +S ++PD +F S+SE + +++ + + S
Sbjct: 1129 QMWYDLDEESRWKYQKRAAPCPDPSLSVWRPDIYFASVSETFEKKIDDFSQEWAAQAERS 1188
Query: 555 H------VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
+ +D+ ++ K SL +PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG+MNV
Sbjct: 1189 YKKSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNV 1248
Query: 609 TLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIK 668
TLGIPRLREILM+A+ IKTP M +P D K KK L K +TR+ + +VL+KV I+
Sbjct: 1249 TLGIPRLREILMVASANIKTPMMSVPVF-DTKKALKKVKSLKKRLTRVCLGEVLQKVDIQ 1307
Query: 669 EWLEISPEPH--MNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKR--A 724
E + + + Y+++F F+P Y+ + ++P I+ E +F K L AI K+
Sbjct: 1308 ESFCMGEKRNKFQVYELRFQFLPHAYYQQEKCLRPEDILHFMETRFFKLLMEAIKKKKNK 1367
Query: 725 AQGLKNMNIEQSRDQMEDDVEDDEGEG-----AEGAGAALGRVDVSSDEERDEEDAVQSH 779
A +N+N SR + D+ D E G E G + V ++ E + DA +
Sbjct: 1368 ASAFRNVN---SRRATQKDLNDTEDSGRSQREEERDEEEEGNI-VDAEAEEGDADASDTK 1423
Query: 780 KKVNQEED----------------------------NDFEEPEDEERMSEREEDDNTSNI 811
+K QEE+ + EP++EE + EE+ +
Sbjct: 1424 RKEKQEEEVDYESEEEGEEEEEEEVQEEGNIKGDGVHQGHEPDEEEHLGLEEEESSQKPP 1483
Query: 812 GERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWC---------KLLFLPSNLF-- 860
+ + ++ ++ V ++ + Y YD + +WC K+ F S+L
Sbjct: 1484 RRHSRPQGAEAIKRRIQAVRESYSFIEDYQYDTEESLWCQVTVKLPLMKINFDMSSLVVS 1543
Query: 861 -----------------------EEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIH 897
+ E + +L T+GIN+ + +Y +LDL +LY NDIH
Sbjct: 1544 LAHKAIVYTTKGITRCLLNETTNSKNEKELVLNTEGINLPELFKYSEILDLRRLYSNDIH 1603
Query: 898 YMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNP 957
MA+TYGIEAA RVI +E+K+VFAVYGI VDPRHLSLVADYM G Y +NR GI+ +
Sbjct: 1604 AMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIQSSS 1663
Query: 958 SFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLR 1007
S +Q+MTFE + ++QA+M G D L++PSA +++G+ + GTGLF+L+
Sbjct: 1664 SPLQQMTFETSFQFLKQATMMGSHDELKSPSACLVVGKVVKGGTGLFELK 1713
>sp|O54889|RPA1_RAT DNA-directed RNA polymerase I subunit RPA1 OS=Rattus norvegicus
GN=Polr1a PE=1 SV=1
Length = 1716
Score = 806 bits (2082), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/1131 (41%), Positives = 653/1131 (57%), Gaps = 138/1131 (12%)
Query: 1 MDGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA S +AEA L QYLVPKDG PL+GLIQDH++SGA +++R F
Sbjct: 596 FDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFF 655
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL 116
TR +YM LVY+ L ++ PP I KP PLWTGKQV+ST++IN+ P+D +
Sbjct: 656 TREQYMELVYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDYTPLN---- 711
Query: 117 LSGILDKKQFGSTQYGL----------VHAVWDTHVTIRHGELLSGILDKKQFGSTQYGL 166
L+G K + GS + ++ ++ V IR GELL G+LDK +GS+ YGL
Sbjct: 712 LTG---KAKIGSKAWVKEKPRPVPDFDPDSMCESQVIIREGELLCGVLDKAHYGSSAYGL 768
Query: 167 VHAVWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARR 225
VH ++ +G E + +L+CLA+LFT YLQ GFTLGV DILV+ D R +II ++ +
Sbjct: 769 VHCCYEIYGGETSGRVLTCLARLFTAYLQLYRGFTLGVEDILVKPNADVMRQRIIEESTQ 828
Query: 226 LGTEAACNALGLPLDTDPEIISSQLQEAYASIPQFR-AQIDRQYKSLLDKVTNNINQVCL 284
G A AL LP + I + Q+A Q ID ++K ++ +N IN+ C+
Sbjct: 829 CGPRAVRAALNLPEAASCDEIQGKWQDAIWRKDQRDFNMIDMKFKEEVNHYSNEINKACM 888
Query: 285 PEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPY 344
P GL FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PY
Sbjct: 889 PFGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPY 948
Query: 345 EVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTV 404
E +PRAGGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL +
Sbjct: 949 EFTPRAGGFVTGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVI 1008
Query: 405 HYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKK-- 462
YD+TVRDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I K + +L +
Sbjct: 1009 QYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSKHLHEVLSRAD 1068
Query: 463 ---------------HPLSLALL---LLLTFKS-----------SGKPNFIFSPHRTKFT 493
H S ALL L+F GK SP T
Sbjct: 1069 PQKVLRHFRAIKKWHHRHSSALLRKGAFLSFSQKIQAAVKALNLEGKTQNGRSPE----T 1124
Query: 494 MDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK---GR 550
+L+ W++LD+++R+KY+K+ CP P +S ++PD HF S+SE + Y++ +
Sbjct: 1125 QQMLQMWHELDEQSRRKYQKRAAPCPDPSLSVWRPDIHFASVSETFEKKIDDYSQEWAAQ 1184
Query: 551 TDASH------VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRG 604
+ SH +D+ ++ K SL +PGE VG+LAAQSIGEPSTQMTLNTFHFAGRG
Sbjct: 1185 AEKSHNRSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRG 1244
Query: 605 DMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEK 664
+MNVTLGIPRLREILM+A+ IKTP M +P + K ++ L K +TR+ + +VL+K
Sbjct: 1245 EMNVTLGIPRLREILMVASANIKTPMMSVPVF-NTKKALRRVKSLKKQLTRVCLGEVLQK 1303
Query: 665 VKIKEWLEISPEPH--MNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAK 722
V I+E + + + Y+++F F+P Y+ + ++P I+ E +F K L AI K
Sbjct: 1304 VDIQESFCMGEKQNKFRVYELRFQFLPHAYYQQEKCLRPEDILHFMETRFFKLLMEAIKK 1363
Query: 723 R--AAQGLKNMNIEQSRDQMEDDVEDD--EGEGAEGAGAALGRVDVSSDEERDEEDAVQS 778
+ A +++N ++ + DD ED E G + V ++ E + DA +
Sbjct: 1364 KNSKASAFRSVNTRRATQKDLDDTEDSGRNRREEERDEEEEGNI-VDAEAEEGDADASDT 1422
Query: 779 HKKVNQ----------------------------EEDNDFEEPEDEERMSEREEDDNTSN 810
+K Q E + EP DEE S EE+ + +
Sbjct: 1423 KRKEKQEEEVDYESEEEGEEEEEEDVQEEENIKGEGAHQTHEP-DEEEGSGLEEESSQNP 1481
Query: 811 IGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKL------------------ 852
+ + ++ ++ V H+ + Y YD + +WC++
Sbjct: 1482 PCRHSRPQGAEAMERRIQAVRESHSFIEDYQYDTEESLWCQVTVKLPLMKINFDMSSLVV 1541
Query: 853 ----------------LFLPSNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDI 896
L + + E + +L T+GIN+ + +Y +LDL +LY NDI
Sbjct: 1542 SLAHNAIVYTTKGITRCLLNETINSKNEKEFVLNTEGINLPELFKYSEVLDLRRLYSNDI 1601
Query: 897 HYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLN 956
H +A+TYGIEAA RVI +E+K+VFAVYGI VDPRHLSLVADYM G Y +NR GI+ +
Sbjct: 1602 HAVANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIQSS 1661
Query: 957 PSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLR 1007
S +Q+MTFE + ++QA+M G D L++PSA +++G+ + GTGLF+L+
Sbjct: 1662 SSPLQQMTFETSFQFLKQATMMGSHDELKSPSACLVVGKVVKGGTGLFELK 1712
>sp|P91875|RPA1_DROME DNA-directed RNA polymerase I subunit RPA1 OS=Drosophila melanogaster
GN=RpI1 PE=1 SV=2
Length = 1642
Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/761 (49%), Positives = 490/761 (64%), Gaps = 48/761 (6%)
Query: 2 DGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLT 57
DG NA S +AEA L+NV+S YLVPKDG+PL GLIQDHVISG KLS+R F
Sbjct: 567 DGDEMNAHYPQSEVARAEAYNLVNVASNYLVPKDGTPLGGLIQDHVISGVKLSIRGRFFN 626
Query: 58 RAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELL 117
R +Y LV+Q L L +I+ LPPTI KP LW+GKQ+LST+IIN+ P+ I + +
Sbjct: 627 REDYQQLVFQGLSQLKKDIKLLPPTILKPAVLWSGKQILSTIIINIIPEGYERI-NLDSF 685
Query: 118 SGILDKKQ---------FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVH 168
+ I K G+ G + + ++ V IR+GELL G+LDK+Q+G+T YGL+H
Sbjct: 686 AKIAGKNWNVSRPRPPICGTNPEG--NDLSESQVQIRNGELLVGVLDKQQYGATTYGLIH 743
Query: 169 AVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGT 228
+++ +G + + LL+ K+FT +LQ GFTLGV+DILV DRKR KII + R +G
Sbjct: 744 CMYELYGGDVSTLLLTAFTKVFTFFLQLEGFTLGVKDILVTDVADRKRRKIIRECRNVGN 803
Query: 229 EAACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGL 288
A AL L + + + +++ AY +FR +DR+YKSLLD TN+IN CLP GL
Sbjct: 804 SAVAAALELEDEPPHDELVEKMEAAYVKDSKFRVLLDRKYKSLLDGYTNDINSTCLPRGL 863
Query: 289 IEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSP 348
I FP+NNLQ MV SGAKGS VNTMQISCLLGQIELEGKRP +M+SG++LPSF +E SP
Sbjct: 864 ITKFPSNNLQLMVLSGAKGSMVNTMQISCLLGQIELEGKRPPLMISGKSLPSFTSFETSP 923
Query: 349 RAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDM 408
++GGF+DGRFMTGIQPQ+FFFHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEGL+VHYD+
Sbjct: 924 KSGGFIDGRFMTGIQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSVHYDL 983
Query: 409 TVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFS-FLEDNIKWICS--------------- 452
TVRDSD S++Q LYGEDGLD+ K ++ DK + FL N I
Sbjct: 984 TVRDSDNSVVQFLYGEDGLDILKSKFFNDKFCADFLTQNATAILRPAQLQLMKDEEQLAK 1043
Query: 453 ----YKVILNLLKKHPLSLALLL------LLTFKSSGKPNFIFS-PHRTKFTMDLLEQWY 501
K I + KK P L L +PN I S R +F LL+ W
Sbjct: 1044 VQRHEKHIRSWEKKKPAKLRAAFTHFSEELREEVEVKRPNEINSKTGRRRFDEGLLKLWK 1103
Query: 502 QLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYD 561
+ D + + YRKK+ CP P ++ ++ D ++GS+SE + Y K + + D
Sbjct: 1104 KADAEDKALYRKKYARCPDPTVAVYKQDLYYGSVSERTRKLITDYAKRKPALK--ETIAD 1161
Query: 562 MIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMM 621
++ K + SLA PGE VG++AAQSIGEPSTQMTLNTFHFAGRG+MNVTLGIPRLREILM+
Sbjct: 1162 IMRVKTIKSLAAPGEPVGLIAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILML 1221
Query: 622 ATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNY 681
A+ IKTPSM+IP P + +A +L ++ +T+A++LE V + L + PE Y
Sbjct: 1222 ASSNIKTPSMDIPIKPGQ---QHQAEKLRINLNSVTLANLLEYVHVSTGLTLDPERSYEY 1278
Query: 682 QMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAK 722
M+F F+P +Y++ V+P II + + F K+L AI K
Sbjct: 1279 DMRFQFLPREVYKEDYGVRPKHIIKYMHQTFFKQLIRAILK 1319
Score = 170 bits (430), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 86/203 (42%), Positives = 126/203 (62%), Gaps = 30/203 (14%)
Query: 834 HNIVHKYSYDKKNHMWCKLLFLPSN------------------------------LFEEK 863
+++V Y+YDK+NH+WC++ S +++
Sbjct: 1435 NDMVKAYTYDKENHLWCQVKLNLSVRYQKPDLTSIIRELAGKSVVHQVQHIKRAIIYKGN 1494
Query: 864 ESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
+ LLKTDGIN+ + Q+ +LDLN+LY NDIH +A TYGIEAA++VI++EV NVF VY
Sbjct: 1495 DDDQLLKTDGINIGEMFQHNKILDLNRLYSNDIHAIARTYGIEAASQVIVKEVSNVFKVY 1554
Query: 924 GIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDS 983
GI VD RHLSL+ADYMT GT+ ++R G+ + S +Q+M+FE L+ ++ A+ GR D
Sbjct: 1555 GITVDRRHLSLIADYMTFDGTFQPLSRKGMEHSSSPLQQMSFESSLQFLKSAAGFGRADE 1614
Query: 984 LRAPSARVMLGQECRQGTGLFQL 1006
L +PS+R+M+G R GTG F+L
Sbjct: 1615 LSSPSSRLMVGLPVRNGTGAFEL 1637
>sp|P15398|RPA1_SCHPO DNA-directed RNA polymerase I subunit rpa1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpa1 PE=1 SV=2
Length = 1689
Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/1084 (37%), Positives = 594/1084 (54%), Gaps = 154/1084 (14%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
++EA F+ N SQYLVP G PL GLIQDHV+ G L+ +DTF TR EY L++QAL
Sbjct: 660 RSEAQFIANTDSQYLVPTSGDPLRGLIQDHVVMGVWLTCKDTFYTRDEYQQLLFQALKPD 719
Query: 73 NT----EIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGS 128
T I+TLPP I +P WTGKQ++S+V++NL P D+ + L K
Sbjct: 720 ETGMYGRIKTLPPAIQRPGIYWTGKQIISSVLLNLKPSDRPGLN--------LKSKAKVP 771
Query: 129 TQYGLVHAVW-----DTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLL 183
+Y W + V GELL GILDK FG++ +GLVH+V + +G + A LL
Sbjct: 772 GKY------WSPDSEEGSVLFDDGELLCGILDKSSFGASAFGLVHSVHELYGPDIAGRLL 825
Query: 184 SCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDP 243
S L++LFT Y Q GFT + D+ + ++ D R +++ + G EAA +GL D+
Sbjct: 826 SVLSRLFTAYAQMRGFTCRMDDLRLDEQGDNWRRQLLENGKSFGLEAASEYVGLSTDSPI 885
Query: 244 EIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVES 303
++++ L+E Y + + +D K ++ +T++I C+P+GL+ FP N++Q M S
Sbjct: 886 ALLNANLEEVYRDDEKLQG-LDAAMKGKMNGLTSSIINKCIPDGLLTKFPYNHMQTMTVS 944
Query: 304 GAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQ 363
GAKGS VN QISCLLGQ ELEG+R +MVSG++LPSF+PYE S ++GGF+ RF+TGI
Sbjct: 945 GAKGSNVNVSQISCLLGQQELEGRRVPLMVSGKSLPSFVPYETSAKSGGFIASRFLTGIA 1004
Query: 364 PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYG 423
PQE++FHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEGL V YD TVRDSD S++Q YG
Sbjct: 1005 PQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLMKHLEGLCVQYDHTVRDSDGSIVQFHYG 1064
Query: 424 EDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNF 483
ED LDVTK+++LT QF F N K +L++K+ + L +
Sbjct: 1065 EDSLDVTKQKHLT--QFEFSAKNYK---------SLIQKYKVKSVL------------SA 1101
Query: 484 IFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSV 543
+ S + + L++ Y+ D P++ + P + GS+SE +V
Sbjct: 1102 VDSETASSYAKKALKKPYKYD----------------PVLDKYPPSRYLGSVSEKFQRAV 1145
Query: 544 VKYTKGRTDA-------SHVD-------KFYDMIFYKNLLSLANPGENVGVLAAQSIGEP 589
+YT+ D S +D KF ++ + SL +PGE+VGVLA+QSIGEP
Sbjct: 1146 DEYTQKNPDKLIASKKESKLDDSLLNESKFKALMQLRYQQSLVDPGESVGVLASQSIGEP 1205
Query: 590 STQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRL 649
STQMTLNTFHFAG G NVTLGIPRLREI+M A+ I+TP+M + + +K+A+
Sbjct: 1206 STQMTLNTFHFAGFGAKNVTLGIPRLREIIMTASANIQTPTMTLRLNDGVS--DKRASAF 1263
Query: 650 AKSMTRITMADVLEKVKIKEWL--EISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDH 707
K + ++ +++V+ +V++ E + + S E Y ++ Y+D+ V +I
Sbjct: 1264 CKEVNKLVLSEVVRQVRVTEKISGQGSDEQSKTYAIRLDLYSRDEYQDEYGVLQEEIEST 1323
Query: 708 FERKFLKELE------VAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGR 761
F +FLK L +A +K+ G K+ + + ++ + DE A AL
Sbjct: 1324 FSNRFLKILNRIIKSYLAKSKQRKSGGKDDTVPEVGQALKPLEDIDEAPIEGRAQEALED 1383
Query: 762 VDVSSDEER--------------DEED--AVQSHKKVNQEEDNDFEEPEDE-----ERMS 800
D + E+ DE D A++ K N+ ED + +E EDE E +S
Sbjct: 1384 EDNDATNEKMVSRSKQHASYEGPDEADKVALRQLKGSNKVEDVNMDEEEDEGFKSDESVS 1443
Query: 801 ---ERE--EDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKL-LF 854
ER+ E NT +I ER +++ + + + N H +D N W + L
Sbjct: 1444 DFKERKLLEKQNTVSISERRELQLKTAKEIL-------SNCKH-LDFDYVNGEWATVELV 1495
Query: 855 LPSN--------LFEEKESKHLLK------------------------TDGINVNFISQY 882
P N L E+ S+ ++ T+G+N+ I ++
Sbjct: 1496 FPINTEKLLMVSLVEKACSETVIHEIPGITRCFSKPPDSALDTVPKVITEGVNLKAIWEF 1555
Query: 883 RHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHS 942
+ + +N +Y NDI + YG+EAA I+ EV +VF VYGI VDPRHLSL+ADYMT
Sbjct: 1556 YNEISMNDIYTNDIAAILRIYGVEAARNAIVHEVSSVFGVYGIAVDPRHLSLIADYMTFE 1615
Query: 943 GTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTG 1002
G Y A NR GI N S KM+FE + +A+++G D L PS+R+++G+ GTG
Sbjct: 1616 GGYKAFNRMGIEYNTSPFAKMSFETTCHFLTEAALRGDVDDLSNPSSRLVVGRVGNFGTG 1675
Query: 1003 LFQL 1006
F +
Sbjct: 1676 SFDI 1679
>sp|P10964|RPA1_YEAST DNA-directed RNA polymerase I subunit RPA190 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPA190 PE=1
SV=2
Length = 1664
Score = 637 bits (1643), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/1087 (36%), Positives = 587/1087 (54%), Gaps = 167/1087 (15%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCI- 71
+AEA L N SQYL P GSP+ GLIQDH+ +G L+ +D+F TR +Y +Y CI
Sbjct: 644 RAEALNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQYQQYIYG--CIR 701
Query: 72 ------LNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQ 125
++I TLPPTI+KP PLWTGKQ+++TV++N+TP D I ++ K +
Sbjct: 702 PEDGHTTRSKIVTLPPTIFKPYPLWTGKQIITTVLLNVTPPDMPGI-------NLISKNK 754
Query: 126 FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSC 185
+ +G + V + G LL GILDK Q+G+++YG+VH++ + +G E A +LS
Sbjct: 755 IKNEYWG--KGSLENEVLFKDGALLCGILDKSQYGASKYGIVHSLHEVYGPEVAAKVLSV 812
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDT---D 242
L +LFT Y+ FT G+ D+ + E ++ RT I+ + G EAA L DT D
Sbjct: 813 LGRLFTNYITATAFTCGMDDLRLTAEGNKWRTDILKTSVDTGREAAAEVTNLDKDTPADD 872
Query: 243 PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
PE++ +LQE + +D S ++ +T+ + C+P+G ++ FP N++Q M
Sbjct: 873 PELLK-RLQEILRDNNK-SGILDAVTSSKVNAITSQVVSKCVPDGTMKKFPCNSMQAMAL 930
Query: 303 SGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGI 362
SGAKGS VN QI CLLGQ LEG+R +MVSG+TLPSF PYE AGG+V GRF +GI
Sbjct: 931 SGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPYETDAMAGGYVKGRFYSGI 990
Query: 363 QPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLY 422
+PQE++FHCMAGREGLIDTAVKTSRSGYLQRCL K LEG+ V YD ++RD+D +L+Q +Y
Sbjct: 991 KPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSIRDADGTLVQFMY 1050
Query: 423 GEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPN 482
G D +D+TK ++T QF F DN LLKK+ S AL+ L +S+
Sbjct: 1051 GGDAIDITKESHMT--QFEFCLDN---------YYALLKKYNPS-ALIEHLDVESA---- 1094
Query: 483 FIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQ--------PLISTFQPDAHFGS 534
K++ L KYRKK P P+++ + P + GS
Sbjct: 1095 -------LKYSKKTL------------KYRKKHSKEPHYKQSVKYDPVLAKYNPAKYLGS 1135
Query: 535 ISENLADSVVKYTKGR------TDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGE 588
+SEN D + + +D + KF ++ K + SL NPGE VG++A+QS+GE
Sbjct: 1136 VSENFQDKLESFLDKNSKLFKSSDGVNEKKFRALMQLKYMRSLINPGEAVGIIASQSVGE 1195
Query: 589 PSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANR 648
PSTQMTLNTFHFAG G NVTLGIPRLREI+M A+ AIKTP M +P D+ +++A+
Sbjct: 1196 PSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTASAAIKTPQMTLPIWNDVS--DEQADT 1253
Query: 649 LAKSMTRITMADVLEKVKIKEWLEISPEPHMN----YQMKFCFIPAHMYRDKTSVKPSKI 704
KS++++ +++V++KV + E S N Y + F + Y ++ V ++
Sbjct: 1254 FCKSISKVLLSEVIDKVIVTETTGTSNTAGGNAARSYVIHMRFFDNNEYSEEYDVSKEEL 1313
Query: 705 IDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRV-- 762
+ +F+ LE AI K I++ + D+ G A+ R+
Sbjct: 1314 QNVISNQFIHLLEAAIVKE---------IKKQKRTTGPDI-----------GVAVPRLQT 1353
Query: 763 ---DVSSDEERDEE--DAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNTSNIG----- 812
+ SS+ +R EE D QSHKK Q ++EP+++E + RE + ++ G
Sbjct: 1354 DVANSSSNSKRLEEDNDEEQSHKKTKQAV--SYDEPDEDEIETMREAEKSSDEEGIDSDK 1411
Query: 813 -----------------ERFKIEFRDSTNVFVKD----VVNQHNIVHKYSYDKKNHMWC- 850
+ +E ++ N +D +++ H + KY++D ++ WC
Sbjct: 1412 ESDSDSEDEDVDMNEQINKSIVEANNNMNKVQRDRQSAIISHHRFITKYNFDDESGKWCE 1471
Query: 851 ----------KLLFLPSNLFEE---------------------KESKHLLKTDGINVNFI 879
KLL + N+ EE + K +L T+G+N +
Sbjct: 1472 FKLELAADTEKLLMV--NIVEEICRKSIIRQIPHIDRCVHPEPENGKRVLVTEGVNFQAM 1529
Query: 880 SQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYM 939
+D++ + ND+ + TYG+EAA I+ E+ NVF+ Y I V RHL L+AD M
Sbjct: 1530 WDQEAFIDVDGITSNDVAAVLKTYGVEAARNTIVNEINNVFSRYAISVSFRHLDLIADMM 1589
Query: 940 THSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQ 999
T GTY+A NR G+ + S KM++E + + +A + + L +PSAR+++G+
Sbjct: 1590 TRQGTYLAFNRQGMETSTSSFMKMSYETTCQFLTKAVLDNEREQLDSPSARIVVGKLNNV 1649
Query: 1000 GTGLFQL 1006
GTG F +
Sbjct: 1650 GTGSFDV 1656
>sp|Q86H36|RPA1_DICDI DNA-directed RNA polymerase I subunit rpa1 OS=Dictyostelium
discoideum GN=polr1a PE=3 SV=1
Length = 1615
Score = 489 bits (1259), Expect = e-137, Method: Compositional matrix adjust.
Identities = 283/681 (41%), Positives = 405/681 (59%), Gaps = 70/681 (10%)
Query: 25 QYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCILNTE--IRTLPPT 82
QYLVP++G+PL GLIQDH+++G L+ RDT T+A++ ++Y + +NT+ I T PP
Sbjct: 622 QYLVPRNGAPLRGLIQDHILTGVLLTKRDTLFTKADFQAILYASCWSVNTKHPIVTPPPC 681
Query: 83 IWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYGLVHAVWDTHV 142
I KP+PLW+GKQ++S + LT + + E S I K +G+ GL D+HV
Sbjct: 682 ILKPVPLWSGKQLISAALNQLTIGRAPL--NLEAPSKI-PTKMWGTK--GL-EITRDSHV 735
Query: 143 TIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLG 202
IR E+++GILDK FG++ YGLVH ++ + + A SLL+ L ++FT YLQ GFT G
Sbjct: 736 IIRQNEMVAGILDKGHFGASSYGLVHTCYELYDPDVAGSLLTLLGRMFTNYLQSRGFTCG 795
Query: 203 VRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQEAYASIPQFRA 262
V D+L++ + ++ R + + KA G A L D + +A S + A
Sbjct: 796 VDDLLMKNKEEKFRVETLKKANEEGYTVAAKFADLS-KYDEQKARDFFSKALQSEREV-A 853
Query: 263 QIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQI 322
++D K L++ T+ + +P G +PFP NN M SGAKGS VN Q+SCLLGQ
Sbjct: 854 RLDGLLKKGLNQYTSKVIDTLIPGGQQKPFPKNNFSLMTVSGAKGSVVNFSQVSCLLGQQ 913
Query: 323 ELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTA 382
ELEGKR MVSG+TLPSF Y+ S RAGGFV RF+TG++PQ++FFHCMAGREGLIDTA
Sbjct: 914 ELEGKRVPRMVSGKTLPSFQAYDASARAGGFVMDRFLTGVRPQDYFFHCMAGREGLIDTA 973
Query: 383 VKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSF 442
VKTSRSGYLQRCL+KHLEGL+V YD TVR+SD S+IQ YGED L++ K YLT +F
Sbjct: 974 VKTSRSGYLQRCLIKHLEGLSVQYDNTVRESDGSVIQFNYGEDSLEIGKTPYLT--KFPI 1031
Query: 443 LEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQ 502
+ +N + FKS +F M+ L + Q
Sbjct: 1032 IAENYEL-------------------------FKS-------------QFPMEQLIE--Q 1051
Query: 503 LDDKARKKYRKKFKACPQ--PLISTFQPDAHFGSISENLADS-----------VVKYTKG 549
L ++ +Y + K P+ P++S F P + G +SE+ + ++K T
Sbjct: 1052 LKNQEVVEYNRSIKTQPELDPVMSKFNPSSDLGCVSESFMNQLNHYIESNPQKLIKTTSN 1111
Query: 550 RTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVT 609
R + F ++++ S+ +PGE+VG+L AQSIGEPSTQMTLNTFH AGRG+ NVT
Sbjct: 1112 RDGKINEKDFRNLMYLYYSRSMVSPGESVGLLCAQSIGEPSTQMTLNTFHLAGRGEANVT 1171
Query: 610 LGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKE 669
LGIPRLRE++M AT TP ME K+E + ++AK + + ++D+++ + ++E
Sbjct: 1172 LGIPRLRELIMTATTKPITPLMEFQINDSTNKVETE--KMAKYLEILKLSDIIKDITVQE 1229
Query: 670 WLEISPEPHMNYQMKFCFIPA 690
+ + + + NY ++ FIP
Sbjct: 1230 YFQ---DTNRNYDIEIEFIPT 1247
Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/143 (41%), Positives = 94/143 (65%)
Query: 864 ESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
++ + ++++G+N++ I + R L ++++Y NDI+ + YG+EA + + E+ NVFA Y
Sbjct: 1468 KTHYSIQSEGVNLSEIFELRDKLKIDEIYTNDIYAILQKYGVEACRQAVTSEISNVFAAY 1527
Query: 924 GIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDS 983
GI VD RHL L+ DYMT G Y A+NR GI N S QKM+FE + +AS+ G D+
Sbjct: 1528 GISVDKRHLILLGDYMTFEGGYRALNRIGIENNTSPFQKMSFETTFSFLSKASLMGDYDT 1587
Query: 984 LRAPSARVMLGQECRQGTGLFQL 1006
+ +PS+R++LGQ + GTG F +
Sbjct: 1588 VTSPSSRIVLGQIVKNGTGSFTI 1610
>sp|A4IF62|RPC1_BOVIN DNA-directed RNA polymerase III subunit RPC1 OS=Bos taurus GN=POLR3A
PE=2 SV=1
Length = 1390
Score = 293 bits (749), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 212/621 (34%), Positives = 308/621 (49%), Gaps = 57/621 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF RA+ ++ L
Sbjct: 516 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 575
Query: 73 NTEI--RTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ +I R PPTI KP+ LWTGKQ+ S + L P D +R G KQ+
Sbjct: 576 DEKIKVRLPPPTILKPVTLWTGKQIFSVI---LRPSDDNPVRANLRTKG----KQYCGRG 628
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L V D++VTI++ EL+SG +DK GS ++ + + + G A +S LA+L
Sbjct: 629 EDL--CVNDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARL 686
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
VYL GF++G+ D+ Q + + +++N + C+ L+T Q
Sbjct: 687 APVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYK-----KCDEYIEALNTG----KLQ 737
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
Q + A I ++ L + ++ CL E +N+ M G+KGS
Sbjct: 738 QQPGCTAEETLEALILKE----LSVIRDHAGSACLRE----LDKSNSPLTMALCGSKGSF 789
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ +GQ + G R R+LP F + P A GFV F +G+ P EFFF
Sbjct: 790 INISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFF 849
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H MAGREGL+DTAVKT+ +GY+QR LVK LE L YD+TVR S +IQ +YG DGLD
Sbjct: 850 HTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDP 909
Query: 430 TKRQYLTDK-QFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPH 488
+ + +F + DNIK + + L K LLL+ +S K N F
Sbjct: 910 AAMEGKDEPLEFKRVLDNIKAVFPCRSEPALSKNE-------LLLSAESIMKKNE-FLCC 961
Query: 489 RTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK 548
+ F ++ + ++ +K +K K +G + V Y
Sbjct: 962 QDSFLQEIKKFIKEVSEKIKKTRDK------------------YGINDNGTTEPRVLYQL 1003
Query: 549 GRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
R + ++KF + K + + PG VG L AQSIGEP TQMTL TFHFAG MN+
Sbjct: 1004 DRITPTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNI 1063
Query: 609 TLGIPRLREILMMATKAIKTP 629
TLG+PR++EI+ A+KAI TP
Sbjct: 1064 TLGVPRIKEII-NASKAISTP 1083
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 68/120 (56%), Gaps = 1/120 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N+ + + T GIEAA II E++ +G+ +D RH+ L++D MT+ G + + R G+
Sbjct: 1249 NNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGL 1308
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNREKK 1012
++ S + +FE + + A+ G++DS+ S +++G GTGLF+L ++ +
Sbjct: 1309 AKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKANR 1368
>sp|O14802|RPC1_HUMAN DNA-directed RNA polymerase III subunit RPC1 OS=Homo sapiens
GN=POLR3A PE=1 SV=2
Length = 1390
Score = 290 bits (741), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 210/621 (33%), Positives = 304/621 (48%), Gaps = 57/621 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF RA+ ++ L
Sbjct: 516 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 575
Query: 73 NTEI--RTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ +I R PPTI KP+ LWTGKQ+ S + L P D +R G KQ+
Sbjct: 576 DEKIKVRLPPPTILKPVTLWTGKQIFSVI---LRPSDDNPVRANLRTKG----KQYCGKG 628
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L D++VTI++ EL+SG +DK GS ++ + + + G A +S LA+L
Sbjct: 629 EDL--CANDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARL 686
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
VYL GF++G+ D+ Q + + +++N + C+ L+T Q
Sbjct: 687 APVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYK-----KCDEYIEALNTG----KLQ 737
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
Q + A I ++ L + ++ CL E +N+ M G+KGS
Sbjct: 738 QQPGCTAEETLEALILKE----LSVIRDHAGSACLRE----LDKSNSPLTMALCGSKGSF 789
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ +GQ + G R R+LP F + P A GFV F +G+ P EFFF
Sbjct: 790 INISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFF 849
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H MAGREGL+DTAVKT+ +GY+QR LVK LE L YD+TVR S +IQ +YG DGLD
Sbjct: 850 HTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDP 909
Query: 430 TKRQYLTDK-QFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPH 488
+ + +F + DNI K + + LS L+L T K F+
Sbjct: 910 AAMEGKDEPLEFKRVLDNI------KAVFPCPSEPALSKNELILTTESIMKKSEFLCC-- 961
Query: 489 RTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK 548
+ F ++ + + +K +K K +G + V Y
Sbjct: 962 QDSFLQEIKKFIKGVSEKIKKTRDK------------------YGINDNGTTEPRVLYQL 1003
Query: 549 GRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
R + V+KF + K + + PG VG L AQSIGEP TQMTL TFHFAG MN+
Sbjct: 1004 DRITPTQVEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNI 1063
Query: 609 TLGIPRLREILMMATKAIKTP 629
TLG+PR++EI+ A+KAI TP
Sbjct: 1064 TLGVPRIKEII-NASKAISTP 1083
Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 67/117 (57%), Gaps = 1/117 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N+ + + T GIEAA II E++ +G+ +D RH+ L++D MT+ G + + R G+
Sbjct: 1249 NNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGL 1308
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNR 1009
++ S + +FE + + A+ G++DS+ S +++G GTGLF+L ++
Sbjct: 1309 AKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHK 1365
>sp|Q5ZL98|RPC1_CHICK DNA-directed RNA polymerase III subunit RPC1 OS=Gallus gallus
GN=POLR3A PE=2 SV=1
Length = 1390
Score = 287 bits (735), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 209/621 (33%), Positives = 307/621 (49%), Gaps = 57/621 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF RA+ ++ L
Sbjct: 516 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 575
Query: 73 NTEI--RTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ +I R PP I KP+ LWTGKQV S++ L P D ++ G KQ+
Sbjct: 576 DEKIKVRLPPPAILKPVTLWTGKQVFSSI---LKPSDDCPVKANLRTKG----KQYCGKG 628
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L + D++VTI++ EL+SG +DK GS ++ + + + G A +S LA+L
Sbjct: 629 EDLCYN--DSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQVEAADAMSRLARL 686
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
VYL GF++G+ D+ Q + + ++++ + C+ L+T Q
Sbjct: 687 APVYLSNRGFSIGIGDVTPGQGLLKAKYELLHAGYK-----KCDEYIEALNTG----KLQ 737
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
Q + A I ++ L + ++ CL E +N+ M G+KGS
Sbjct: 738 QQPGCTAEETLEALILKE----LSVIRDHAGSACLRE----LDKSNSPLIMALCGSKGSF 789
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q+ +GQ + G R R+LP F + P A GFV F +G+ P EFFF
Sbjct: 790 INISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFF 849
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H MAGREGL+DTAVKT+ +GY+QR LVK LE L YD+TVR S +IQ +YG DGLD
Sbjct: 850 HTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDP 909
Query: 430 TKRQYLTDK-QFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGKPNFIFSPH 488
+ + +F + DNI+ + + L K L+LT +S K N F
Sbjct: 910 AAMEGKDEPLEFKRVLDNIRAVYPCRSEPALSKNE-------LVLTSESIMKKNE-FLCC 961
Query: 489 RTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLADSVVKYTK 548
R F ++ + + +K +K K +G + V Y
Sbjct: 962 RDSFLQEIKKFIKGVSEKIKKTRDK------------------YGINDNGTTEPRVLYQL 1003
Query: 549 GRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
R + ++KF + K + + PG VG L AQSIGEP TQMTL TFHFAG MN+
Sbjct: 1004 DRITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNI 1063
Query: 609 TLGIPRLREILMMATKAIKTP 629
TLG+PR++EI+ A+KAI TP
Sbjct: 1064 TLGVPRIKEII-NASKAISTP 1083
Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 81/151 (53%), Gaps = 2/151 (1%)
Query: 864 ESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
+ K+ L +G N+ + H + K N+ + + T GIEAA II E++ +
Sbjct: 1220 KEKYKLLVEGDNLRAV-MATHGVKGTKTSSNNTYEVEKTLGIEAARTTIINEIQYTMVNH 1278
Query: 924 GIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGRED 982
G+ +D RH+ L++D MT+ G + + R G+ ++ S + +FE + + A+ G++D
Sbjct: 1279 GMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKD 1338
Query: 983 SLRAPSARVMLGQECRQGTGLFQLRNREKKK 1013
S+ S +++G GTGLF+L ++ K+
Sbjct: 1339 SVCGVSECIIMGIPMNIGTGLFKLLHKADKE 1369
>sp|Q6BI69|RPC1_DEBHA DNA-directed RNA polymerase III subunit RPC1 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC
2968) GN=RPC1 PE=3 SV=2
Length = 1457
Score = 280 bits (715), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 207/646 (32%), Positives = 319/646 (49%), Gaps = 68/646 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + L PK G P+ QD + +S +D+F RA + Q LC++
Sbjct: 525 RAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLVSHKDSFFDRASLV----QLLCMM 580
Query: 73 ---NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQ--FG 127
+ + PP I+KP+ LWTGKQV S ++I K V+I LD K +
Sbjct: 581 SDADIQFDIPPPAIFKPVMLWTGKQVFS-LLIKPNKKSNVVIN--------LDAKNKTYT 631
Query: 128 STQYGLVHAVW--DTHVTIRHGELLSGILDKKQFG-STQYGLVHAVWDTHGAEHAISLLS 184
G + + D V IR ++LSG++DK G ++ + + + +G + A + ++
Sbjct: 632 PPAKGFPNEMSPNDGFVIIRGSQILSGVMDKSTLGDGKKHSVFYTILRDYGPDEAANAMN 691
Query: 185 CLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPE 244
+AKL YL GF++G+ D++ + +K+ ++ +A E L+T P
Sbjct: 692 RMAKLCARYLGNRGFSIGINDVIPGSDLKQKKELMVEQAYLKCDELIDLYNRGNLETQPG 751
Query: 245 IISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESG 304
Q EA + LL KV + ++C+ E AN M G
Sbjct: 752 CNEEQTLEA-------------KIGGLLSKVREEVGEICINE----LDSANAPLIMATCG 794
Query: 305 AKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQP 364
+KGST+N Q+ ++GQ + G R R+LP F +P++ GFV F +G+ P
Sbjct: 795 SKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFTKNSKTPQSKGFVRNSFFSGLTP 854
Query: 365 QEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGE 424
EF FH ++GREGL+DTAVKT+ +GY+ R L+K L+ L+ YD TVR+S ++Q YG
Sbjct: 855 PEFLFHSISGREGLVDTAVKTAETGYMSRRLMKSLDDLSAQYDHTVRNSSNGIVQFTYGG 914
Query: 425 DGLDVTK-----------RQYLTDKQFSF-LEDNIKWICSYKVILNLLKK--HPLSLALL 470
DGLD RQ+ +F +ED K + Y++I L+ HPL L+
Sbjct: 915 DGLDPFDMEGDARPVNFVRQWDHAYNITFDIED--KGLLPYQII-ELVDSILHPLEDRLV 971
Query: 471 LLLTFKSSGKPNFIFSPHRTKFT--MDLLEQWYQ-----LDDKARKKYRKKFKACPQPLI 523
+ + GK + + ++ D ++YQ +KA K + K +P +
Sbjct: 972 ---RYDNVGKIIPLEDSDKIEYIDQNDAEREFYQSIREFTTNKATKLAEIREKKMLKPFL 1028
Query: 524 STFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAA 583
+ +P F + E+ V + A+ ++KF + YK + PG VG + A
Sbjct: 1029 T--EPAEDFIRLDESDESLVAINQLSKVSANSINKFLEQCIYKYSRAKVEPGTAVGAIGA 1086
Query: 584 QSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
QSIGEP TQMTL TFHFAG MNVTLG+PR++EI+ A+K I TP
Sbjct: 1087 QSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII-NASKVISTP 1131
Score = 74.3 bits (181), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 81/156 (51%), Gaps = 14/156 (8%)
Query: 866 KHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 925
K ++ TDG+ V + H+L++ ++ GIEAA II E+ + +G+
Sbjct: 1300 KEVMSTDGV-VGTKTSTNHILEVFQVL-----------GIEAARASIIGEIDYTMSKHGM 1347
Query: 926 EVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSL 984
VDPRH+ L+ D MT+ G + + R G+ ++ S +Q +FE + + AS + D +
Sbjct: 1348 SVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDASFYMKNDKI 1407
Query: 985 RAPSARVMLGQECRQGTGLFQLRNR-EKKKKKVEAK 1019
S ++LGQ GTG F+L N + KK +E K
Sbjct: 1408 EGVSECIILGQTMNIGTGAFKLVNSFDVDKKALEMK 1443
>sp|P04051|RPC1_YEAST DNA-directed RNA polymerase III subunit RPC1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPO31 PE=1
SV=1
Length = 1460
Score = 264 bits (674), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 206/686 (30%), Positives = 318/686 (46%), Gaps = 88/686 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + L PK G P+ QD + +S +D+F RA + Q L ++
Sbjct: 528 RAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFYDRAT----LTQLLSMM 583
Query: 73 NTEIRTL---PPTIWKPMPLWTGKQVLS---------TVIINLTPKDKVIIR-HGELLSG 119
+ I PP I KP LWTGKQV S V+INL K+KV + + L
Sbjct: 584 SDGIEHFDIPPPAIMKPYYLWTGKQVFSLLIKPNHNSPVVINLDAKNKVFVPPKSKSLPN 643
Query: 120 ILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFG-STQYGLVHAVWDTHGAEH 178
+ + D V IR ++LSG++DK G ++ + + + +G +
Sbjct: 644 EMSQN--------------DGFVIIRGSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQE 689
Query: 179 AISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLP 238
A + ++ +AKL +L GF++G+ D+ + +K+ +++ A E
Sbjct: 690 AANAMNRMAKLCARFLGNRGFSIGINDVTPADDLKQKKEELVEIAYHKCDELITLFNKGE 749
Query: 239 LDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQ 298
L+T P Q EA + LL KV + VC+ E ++ + N
Sbjct: 750 LETQPGCNEEQTLEA-------------KIGGLLSKVREEVGDVCINE--LDNW--NAPL 792
Query: 299 FMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRF 358
M G+KGST+N Q+ ++GQ + G R R+LP F +P++ GFV F
Sbjct: 793 IMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTPQSKGFVRNSF 852
Query: 359 MTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLI 418
+G+ P EF FH ++GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR S ++
Sbjct: 853 FSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTSANGIV 912
Query: 419 QVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALL-------- 470
Q YG DGLD + + + +F N W +Y + N K L A++
Sbjct: 913 QFTYGGDGLDPLEMEG-NAQPVNF---NRSWDHAYNITFNNQDKGLLPYAIMETANEILG 968
Query: 471 ----LLLTFKSSG---------KPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKK--- 514
L+ + +SG K ++ + L ++ A RK
Sbjct: 969 PLEERLVRYDNSGCLVKREDLNKAEYVDQYDAERDFYHSLREYINGKATALANLRKSRGM 1028
Query: 515 --FKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLA 572
P + PD ++ +N+ SV + R V KF ++ +K +
Sbjct: 1029 LGLLEPPAKELQGIDPDE---TVPDNVKTSVSQLY--RISEKSVRKFLEIALFKYRKARL 1083
Query: 573 NPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSME 632
PG +G + AQSIGEP TQMTL TFHFAG MNVTLG+PR++EI+ A+K I TP +
Sbjct: 1084 EPGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII-NASKVISTPIIN 1142
Query: 633 IPFLPDMPKLEKKANRLAKSMTRITM 658
+ D +++A R+ K T+
Sbjct: 1143 AVLVNDN---DERAARVVKGRVEKTL 1165
Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N + + S GIEAA IIRE+ + +G+ VDPRH+ L+ D MT+ G + + R G+
Sbjct: 1317 NHVLEVFSVLGIEAARYSIIREINYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGL 1376
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
++ S +Q +FE + + A+ ++D++ S ++LGQ GTG F++
Sbjct: 1377 SKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVSECIILGQTMSIGTGSFKV 1430
>sp|O94666|RPC1_SCHPO DNA-directed RNA polymerase III subunit rpc1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpc1 PE=2 SV=1
Length = 1405
Score = 257 bits (656), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 195/644 (30%), Positives = 313/644 (48%), Gaps = 84/644 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
K EA LM + + + P++G P+ QD + + LSL+DTFL R N+ C +
Sbjct: 510 KTEALELMGIKNNLVSPRNGEPIIAATQDFITAAYLLSLKDTFLDRKSISNIC----CYM 565
Query: 73 ---NTEIRTLPPTIWKPMPLWTGKQVL---------STVIINLTPKDKVIIRHGELLSGI 120
+T I PP I KP LWTGKQV S V++NL K + R +
Sbjct: 566 MDASTHIDLPPPAIIKPRCLWTGKQVFTVLMKPNRFSKVLVNLDAKTRSFSRIKSKTPEM 625
Query: 121 LDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQY-GLVHAVWDTHGAEHA 179
K D ++ IR+ E+++G++DK G + L + + +GA A
Sbjct: 626 CPK---------------DGYLMIRNSEIIAGVVDKSVVGDGKKDSLFYVILRDYGALEA 670
Query: 180 ISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPL 239
++ L+K+ +L GF++G+ D+ + ++ ++NKA + L
Sbjct: 671 AEAITRLSKMCARFLGNRGFSIGIEDVQPGKSLSSQKEILVNKAYATSDDFIMQYAKGIL 730
Query: 240 DTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQF 299
+ P + EA S S L KV +++ ++C+ E PAN+
Sbjct: 731 ECQPGMDQEATLEAKIS-------------STLSKVRDDVGEICMDE----LGPANSPLI 773
Query: 300 MVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFM 359
M G+KGS +N Q+ +GQ + GKR R+LP F P A GFV F
Sbjct: 774 MATCGSKGSKINVSQMVACVGQQIISGKRVPDGFQDRSLPHFHKNSKHPLAKGFVSNSFY 833
Query: 360 TGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQ 419
+G+ P EF FH ++GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR S+ ++Q
Sbjct: 834 SGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSAYDGTVRSSNSDVVQ 893
Query: 420 VLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTF--KS 477
+YG+DGLD T + D Q +E WI + V LN +H ++ ++ + ++
Sbjct: 894 FVYGDDGLDPTYME--GDGQ--AVEFKRTWI--HSVNLN-YDRHDSAMLPYEIIDYVNRA 946
Query: 478 SGKPNFIFSPHRTKFTMDLLE--QWYQLDDKARKKYRKKFKACPQPLISTFQPDA----- 530
P F+ + +R D +E + + +++ A+ + + P++ +PD
Sbjct: 947 LDDPKFLTNCNR-----DFIETIRTFVIENIAKYLASVRERRDLAPMLE--EPDMDDLDD 999
Query: 531 ----HFGSISENLA-DSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQS 585
F +++ + +++++ T+ + F D + K + + PG VG + AQS
Sbjct: 1000 MEGDEFAPVAKRKSVENIIRVTE-----KQLRSFVDRCWEKYMRAKVEPGTAVGAIGAQS 1054
Query: 586 IGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
IGEP TQMTL TFHFAG TLG+PR++EI+ A K I TP
Sbjct: 1055 IGEPGTQMTLKTFHFAGVA-AQTTLGVPRIKEII-NAAKTISTP 1096
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 63/121 (52%), Gaps = 1/121 (0%)
Query: 890 KLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMN 949
K N + M GIEAA II E+ A +G+ VDPRH+ L+ D MT G + +
Sbjct: 1259 KTSTNHVMEMKDVLGIEAARYSIISEIGYTMAKHGLTVDPRHIMLLGDVMTCKGEVLGIT 1318
Query: 950 RNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRN 1008
R G+ ++ S + +FE + + A+ + +DS+ S ++LG+ GT +FQL
Sbjct: 1319 RFGVAKMKDSVLALASFEKTTDHLFNAAARFAKDSIEGISECIVLGKLAPIGTNVFQLIR 1378
Query: 1009 R 1009
R
Sbjct: 1379 R 1379
>sp|P16355|RPA1_TRYBB DNA-directed RNA polymerase I subunit RPA1 OS=Trypanosoma brucei
brucei GN=TRP11 PE=1 SV=1
Length = 1744
Score = 254 bits (650), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 165/457 (36%), Positives = 238/457 (52%), Gaps = 58/457 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALC-- 70
+AE LM+ + YLVP G P+ GLIQDHV +G ++LRD F + ++ LVY +
Sbjct: 614 RAEVETLMDANINYLVPTSGRPIRGLIQDHVAAGVLVTLRDKFFDHSTFVQLVYNGVGPY 673
Query: 71 ----ILNTEIRTLP-PTIWKPMPLWTGKQVLSTVI-----INLTPKDKVIIRHGELLSGI 120
+ T +P P I P P+WTGKQ++S ++ ++ I G L G
Sbjct: 674 IQENVGITLAELIPIPAILMPRPMWTGKQLISVMVRFSSGLSAASDCGREIEGGITLKGT 733
Query: 121 -------LDKKQFGSTQY--GLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVW 171
D+ GS AV D+ V + EL++G + KKQ G++ H V+
Sbjct: 734 SQIQPSAFDRIPAGSCDAVRAKSGAVVDSTVMFANSELITGFMCKKQLGASNMSAPHHVY 793
Query: 172 DTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDI-LVRQERDRKRTKIINKARRLGTEA 230
+ +G L + ++ + L++ G +L + D+ LV +ER R ++ K +
Sbjct: 794 ELYGPHRTGQLFAAFGRVLLLALRKEGLSLAMDDMFLVDEER---RCDLLRKLDDI---- 846
Query: 231 ACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIE 290
AL +P D E ++ + YA+ I Q +P+ ++
Sbjct: 847 ---ALDVP---DEEATAAPMIADYAT---------------------KIQQEFVPQRMLV 879
Query: 291 PFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRA 350
PFP N+L M SGAKGS +N Q+S LGQ +G R M S +TLPSF E R+
Sbjct: 880 PFPKNHLLLMTISGAKGSNLNATQMSLQLGQQLFDGLRVKRMNSSKTLPSFFTNEKRARS 939
Query: 351 GGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTV 410
GF G F +GI+P E+ H MAGR+GLIDTAVKTSRSG+LQRCL+K LE L VH+D TV
Sbjct: 940 FGFAMGSFASGIRPAEYTIHAMAGRDGLIDTAVKTSRSGHLQRCLIKGLESLVVHWDRTV 999
Query: 411 RDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNI 447
RDS+ S+IQ +YG DGLD K LT + ++DN+
Sbjct: 1000 RDSNGSVIQFMYGGDGLDPCKASTLT--AWEMMKDNV 1034
Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 64/105 (60%), Gaps = 2/105 (1%)
Query: 561 DMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILM 620
D+ + L +L PGE VG+LAAQ+ GEPSTQMTLNTFH AG +VT GIPRLRE+L+
Sbjct: 1146 DITARRRLWALCEPGEPVGLLAAQAAGEPSTQMTLNTFHTAGSTVSHVTEGIPRLRELLI 1205
Query: 621 MATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKV 665
A+ + ++ +P + EK ++ ++ + D L KV
Sbjct: 1206 YAS--VNKAAVVVPVTNATEEDEKVIAKMLRAGVAAKLTDCLAKV 1248
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+ L++ DI M + +GIE+ + E+ +F Y VDPRHLSL+AD TH G +
Sbjct: 1609 IKLHQACSTDIRDMGTYFGIESGYAALYDELNKLFNRY--NVDPRHLSLIADTSTHRGRW 1666
Query: 946 VAMNRNG-IRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
N G I + S + +MTF + +A +G D L + S+ +M+G+ R GT
Sbjct: 1667 ENFNFTGVISTSASPLFQMTFASSKRWLHRAVSRGMSDDLESFSSAIMVGERPRVGTASV 1726
Query: 1005 QL 1006
+L
Sbjct: 1727 RL 1728
>sp|P36594|RPB1_SCHPO DNA-directed RNA polymerase II subunit rpb1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpb1 PE=1 SV=1
Length = 1752
Score = 247 bits (630), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 46/435 (10%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE + V Q + P+ P+ G++QD + K SLRD FLTR MN++ L +
Sbjct: 504 RAEIQEITMVPKQIVSPQSNKPVMGIVQDTLAGVRKFSLRDNFLTRNAVMNIM---LWVP 560
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + PP I KP LWTGKQ+LS +I PK +IR D KQ S
Sbjct: 561 DWDGILPPPVILKPKVLWTGKQILSLII----PKGINLIRD--------DDKQSLSNPT- 607
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
D+ + I +GE++ G++DKK G++Q GLVH +W G E + + ++
Sbjct: 608 ------DSGMLIENGEIIYGVVDKKTVGASQGGLVHTIWKEKGPEICKGFFNGIQRVVNY 661
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GF++G+ D + + ++ T+ + +ARR E +A L +P + L+E
Sbjct: 662 WLLHNGFSIGIGDTIADADTMKEVTRTVKEARRQVAECIQDAQHNRLKPEPGMT---LRE 718
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
+ F A++ R +L++ +N + E ++ +NN++ MV +G+KGS +N
Sbjct: 719 S------FEAKVSR----ILNQARDNAGRSA--EHSLKD--SNNVKQMVAAGSKGSFINI 764
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+S +GQ +EGKR RTLP F + SP + GF++ ++ G+ PQEFFFH M
Sbjct: 765 SQMSACVGQQIVEGKRIPFGFKYRTLPHFPKDDDSPESRGFIENSYLRGLTPQEFFFHAM 824
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKR 432
AGREGLIDTAVKT+ +GY+QR LVK +E + V YD TVR++ +IQ YGEDGLD T
Sbjct: 825 AGREGLIDTAVKTAETGYIQRRLVKAMEDVMVRYDGTVRNAMGDIIQFAYGEDGLDATLV 884
Query: 433 QY-------LTDKQF 440
+Y L+ KQF
Sbjct: 885 EYQVFDSLRLSTKQF 899
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 65/98 (66%), Gaps = 1/98 (1%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
++ +PGE VG LAAQSIGEP+TQMTLNTFH+AG NVTLG+PRL+EIL +A K IKTP
Sbjct: 1059 AVVSPGEMVGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVA-KNIKTP 1117
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKI 667
S+ I +P + A + + T++ V +I
Sbjct: 1118 SLTIYLMPWIAANMDLAKNVQTQIEHTTLSTVTSATEI 1155
>sp|P18616|RPB1_ARATH DNA-directed RNA polymerase II subunit RPB1 OS=Arabidopsis thaliana
GN=RPB205 PE=1 SV=3
Length = 1839
Score = 237 bits (605), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 154/452 (34%), Positives = 228/452 (50%), Gaps = 45/452 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE LM V + P+ P+ G++QD ++ K++ RDTF+ + +MN + +
Sbjct: 512 RAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNTL---MWWE 568
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + + P I KP PLWTGKQV + +I PK ++R+ T+ G
Sbjct: 569 DFDGKVPAPAILKPRPLWTGKQVFNLII----PKQINLLRYSAW---------HADTETG 615
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ DT V I GELL+G L KK G++ LVH +W+ G + A L L
Sbjct: 616 FI-TPGDTQVRIERGELLAGTLCKKTLGTSNGSLVHVIWEEVGPDAARKFLGHTQWLVNY 674
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L + GFT+G+ D + K + I+ A+ + G LD +P
Sbjct: 675 WLLQNGFTIGIGDTIADSSTMEKINETISNAKTAVKDLIRQFQGKELDPEPGRT------ 728
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
R + + +L+K ++ + L E NNL+ MV +G+KGS +N
Sbjct: 729 -------MRDTFENRVNQVLNKARDDAGSSAQ-KSLAE---TNNLKAMVTAGSKGSFINI 777
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q++ +GQ +EGKR GRTLP F + P + GFV+ ++ G+ PQEFFFH M
Sbjct: 778 SQMTACVGQQNVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 837
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVT-- 430
GREGLIDTAVKTS +GY+QR LVK +E + V YD TVR+S +IQ LYGEDG+D
Sbjct: 838 GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWI 897
Query: 431 KRQYLT---------DKQFSFLEDNIKWICSY 453
+ Q L D+ F + D+ W +Y
Sbjct: 898 ESQKLDSLKMKKSEFDRTFKYEIDDENWNPTY 929
Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 134/458 (29%), Positives = 217/458 (47%), Gaps = 63/458 (13%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
L SL PGE +G +AAQSIGEP+TQMTLNTFH+AG NVTLG+PRLREI+ +A K IK
Sbjct: 1074 LQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA-KRIK 1132
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCF 687
TPS+ + P+ K ++ A + ++ T+ V + ++ W + P + + F F
Sbjct: 1133 TPSLSVYLTPEASKSKEGAKTVQCALEYTTLRSVTQATEV--WYDPDPMSTI-IEEDFEF 1189
Query: 688 IPAHMYRDKTSVKPSKIIDHFERKFL-KELEVAIAKRAAQGLKNMNIEQSRDQMEDDV-- 744
+ ++ V P KI R L +E+ V A + +N+E +DD+
Sbjct: 1190 VRSYYEMPDEDVSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLE-----FDDDLTC 1244
Query: 745 --EDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSER 802
DD A + R+ + +DE E +Q E ED+ + +
Sbjct: 1245 IFNDD------NAQKLILRIRIMNDEGPKGE--LQD------------ESAEDDVFLKKI 1284
Query: 803 EEDDNTSNIGERFKIE-FRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNLFE 861
E SN+ + D VF+K V K +D++ F+
Sbjct: 1285 E-----SNMLTEMALRGIPDINKVFIKQ-------VRKSRFDEEGG------------FK 1320
Query: 862 EKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 921
E + +L T+G+N+ + + +D + N + + GIEA R ++ E++ V +
Sbjct: 1321 TSE-EWMLDTEGVNLLAVMCHED-VDPKRTTSNHLIEIIEVLGIEAVRRALLDELRVVIS 1378
Query: 922 VYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSF-IQKMTFEMPLEKIRQASMQGR 980
G V+ RHL+++ D MT+ G +A+ R+GI N + + + +FE ++ + A+
Sbjct: 1379 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAE 1438
Query: 981 EDSLRAPSARVMLGQECRQGTGLFQLR-NREKKKKKVE 1017
D LR + +MLGQ GTG +L N E K +E
Sbjct: 1439 TDCLRGVTENIMLGQLAPIGTGDCELYLNDEMLKNAIE 1476
>sp|Q75A34|RPB1_ASHGO DNA-directed RNA polymerase II subunit RPB1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=RPB1 PE=3 SV=2
Length = 1745
Score = 227 bits (578), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 150/419 (35%), Positives = 221/419 (52%), Gaps = 41/419 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S L V Q + P+ P G++QD + K++LRDTF+ + +N++Y I
Sbjct: 498 RAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKMTLRDTFIELDQVLNMLY---WIP 554
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGI-LDKKQFGSTQY 131
+ + PTI KP PLW+GKQ+LS I SGI L + G+T
Sbjct: 555 DWDGVIPTPTILKPKPLWSGKQLLSMAI----------------PSGIHLQRFDEGTTYL 598
Query: 132 GLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFT 191
+ D + I G+++ G++DKK GS+ GL+H V G E L + K+
Sbjct: 599 ----SPKDNGMLIIDGQIIFGVVDKKTVGSSSGGLIHVVTREKGPEVCAKLFGNIQKVVN 654
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQ 251
+L GF++G+ D + ++ R+ T I A++ E A L + L+
Sbjct: 655 YWLLHNGFSIGIGDTIADEKTMREITDAIALAKKKVEEVTKEAQANLLTAKHGMT---LR 711
Query: 252 EAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVN 311
E+ F + R DK + +V L + NN++ MV +G+KGS +N
Sbjct: 712 ES------FEDNVVRYLNEARDKAGRSA-EVNLKD-------LNNVKQMVSAGSKGSFIN 757
Query: 312 TMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHC 371
Q+S +GQ +EGKR A + RTLP F + SP + GFV+ ++ G+ PQEFFFH
Sbjct: 758 IAQMSACVGQQSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHA 817
Query: 372 MAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVT 430
M GREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S ++IQ +YGEDG+D
Sbjct: 818 MGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGNIIQFVYGEDGMDAA 876
Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 128/449 (28%), Positives = 213/449 (47%), Gaps = 68/449 (15%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
L S+ +PGE VGVLAAQSIGEP+TQMTLNTFHFAG VT G+PRL+EIL +A K +K
Sbjct: 1054 LRSIVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVA-KNMK 1112
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNY------ 681
TPS+ + +L + +++ +L +S T L+ V + + P+P
Sbjct: 1113 TPSLTV-YLEESYATDQEKAKLIRSAIEHT---TLKSVTVASEIYYDPDPSSTVIEEDEE 1168
Query: 682 --QMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQ 739
Q+ F + + S+K + +L LE+ R A K++ + Q ++
Sbjct: 1169 IIQLHFSLMDEET---EASLK-------HQSPWLLRLEL---DRVAMTDKDLTMGQVGEK 1215
Query: 740 MEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERM 799
+++ ++D + V E+ E+ ++ + V + D E +E+ M
Sbjct: 1216 IKETFKND--------------LFVIWSEDNAEKLIIRC-RVVRDPKTLDAEAEAEEDHM 1260
Query: 800 SEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNL 859
++ E+ +I R V+D+ V YD+K +PS
Sbjct: 1261 LKKIENTMLESITLR-----------GVQDITR----VVMMKYDRK---------VPSET 1296
Query: 860 FE-EKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKN 918
E K + +L+TDG+N++ + +D ++Y N + + GIEA + +EV N
Sbjct: 1297 GEYHKIPEWVLETDGVNLSEVMSVPG-VDPTRIYTNSFIDIMNVLGIEAGRAALYKEVYN 1355
Query: 919 VFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASM 977
V A G V+ RH++L+ D MT G +++ R+G R + + + +FE +E + +A
Sbjct: 1356 VIASDGSYVNYRHMALLVDVMTSQGFLMSVTRHGFNRADTGALMRCSFEETVEILFEAGA 1415
Query: 978 QGREDSLRAPSARVMLGQECRQGTGLFQL 1006
D S V+LGQ GTG F +
Sbjct: 1416 AAELDDCSGVSENVILGQMAPIGTGSFDV 1444
>sp|P25202|RPC1_GIAIN DNA-directed RNA polymerase III subunit RPC1 OS=Giardia intestinalis
GN=RPOA3 PE=3 SV=1
Length = 1741
Score = 224 bits (570), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 196/682 (28%), Positives = 303/682 (44%), Gaps = 83/682 (12%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLV------- 65
+AEA LM + P+ G + GL QD + LS + F+TR EY V
Sbjct: 739 RAEAGILMGSHENIISPRHGECMIGLTQDFLTGIYLLSGKGIFMTRQEYCQHVSYGCDGF 798
Query: 66 ---YQALCILN--------------TEIRTL---------PPTIWKPMPLWTGKQVLSTV 99
+ + N TE T+ P I P L++GKQVLS V
Sbjct: 799 GDATYGVSLYNYGREFIKSIHDRRGTEEDTVGFVKVPCLSQPCIVYPRQLYSGKQVLS-V 857
Query: 100 IINLTPKDKVII--RHGELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKK 157
++ D V I HG+ K + +V D ++ I++ E L G L K
Sbjct: 858 LMKGNDFDSVNINLEHGD--------KTYKKDSDRRALSVNDDYIIIQNSEHLVGRLTKT 909
Query: 158 QFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRT 217
S++ + + + +G A ++ AK+ +L GFT+G+ D++ Q K+
Sbjct: 910 FLASSKNCIFYFLVQNYGPVSAARIMLRFAKVAARFLMNYGFTIGIDDVMPSQRVLGKKE 969
Query: 218 KIINKARRLGTEAACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTN 277
I+ + E + L+ P S +QE ++ L+++ +
Sbjct: 970 VIVQEGYEKAQEKIRDYESGKLEAIP---GSTVQETL--------------EATLNQILS 1012
Query: 278 NINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRT 337
N+ + C L E N M G+KGS +N Q+ +LGQ G R R+
Sbjct: 1013 NVRESCAQIALKELHFTNKPLIMSLCGSKGSPINIAQMIIILGQQSFGGSRAPDDFYTRS 1072
Query: 338 LPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVK 397
P F Y P A GF+ F TG+ P EF H AGR+G+ID+A KT+ +GYLQR LVK
Sbjct: 1073 TPYFYHYSKEPNAKGFILNSFYTGLLPFEFLAHARAGRDGVIDSACKTADTGYLQRRLVK 1132
Query: 398 HLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVIL 457
LE L+V YD TVR+S S++Q +G DG D K + T + F ++ + + ++L
Sbjct: 1133 CLEDLSVSYDFTVRNSKKSVVQFRFGHDGFDPIKLEVGTGQCF-----DLDTLLRHIILL 1187
Query: 458 NLLKKHPLSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKA 517
N + +LL +K+ + + + + L+E R F+
Sbjct: 1188 NRSQDLAEGAFPVLLDRYKAEAELDVLLNKDFYGQEACLIE---------RSNVTSYFQQ 1238
Query: 518 CPQPLISTFQPDAHFG-SISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGE 576
P ++T + H +++ LA S ++ T + D +D F + K + PG
Sbjct: 1239 SILPKLTT---NTHIATTVAPALAASFLQTTLTKKD---IDDFLRQVRRKYIRLNLEPGS 1292
Query: 577 NVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFL 636
G +AAQS+GEPSTQMTL +FH AG MN+T G+PRL+EI+ K I TP +
Sbjct: 1293 PCGAVAAQSVGEPSTQMTLKSFHHAGLASMNITQGVPRLKEIVDGVVK-ISTPITTVELH 1351
Query: 637 PDMPKLEKKANRLAKSMTRITM 658
D+ K E A K + + M
Sbjct: 1352 VDVDKEELAATVTEKYLEKARM 1373
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 74/159 (46%), Gaps = 7/159 (4%)
Query: 865 SKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 924
+K+ L +GI + I + D + N+I +A+T GIEAA I E+K +G
Sbjct: 1511 TKYNLLVEGIGLQNILNVSGI-DFTRTLSNNIVEVANTLGIEAAVATISNEIKACMDSHG 1569
Query: 925 IEVDPRHLSLVADYMTHSGTYVAMNRNGIR--LNPSFIQKMTFEMPLEKIRQASMQGRED 982
+ VD RH+ L+AD M G + R G+ S I +FE E + A++ + D
Sbjct: 1570 MAVDMRHIRLLADIMCFRGRVLGFTRFGLTKMKADSVIMLASFEKTGEHLFNAALGNKVD 1629
Query: 983 SLRAPSARVMLGQECRQGTGLFQLRNR----EKKKKKVE 1017
+ ++LG+ GTG F L EK K +E
Sbjct: 1630 EANGVTESIILGKPMSMGTGSFSLLQAPYFDEKTGKTIE 1668
>sp|Q8SSC4|RPB1_ENCCU DNA-directed RNA polymerase II subunit RPB1 OS=Encephalitozoon
cuniculi (strain GB-M1) GN=RPB1 PE=3 SV=1
Length = 1599
Score = 221 bits (564), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 149/446 (33%), Positives = 220/446 (49%), Gaps = 62/446 (13%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S+ KAE L VS Q + P+ P+ G++QD + +LRDTFL E M+L+Y
Sbjct: 463 SYTSKAELEELALVSRQIISPQSNKPVMGIVQDTLTGLRLFTLRDTFLNEREVMSLLYA- 521
Query: 69 LCILNTEIRTLP-----------------------PTIWKPMPLWTGKQVLSTVIINLTP 105
+N E +P P I KPM LWTGKQVLS V+ NL
Sbjct: 522 ---VNLEFCDIPLGDAVQTGLRKGKDYDIMKILRKPAIAKPMRLWTGKQVLSFVLPNLN- 577
Query: 106 KDKVIIRHGELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYG 165
+ H + DK+ G DT V I+ G + SG++DKK G+TQ G
Sbjct: 578 YIGLSSEHDDD-----DKENIG-----------DTRVIIQDGYIHSGVIDKKAAGATQGG 621
Query: 166 LVHAVWDTHGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKAR 224
LVH +++ G + A + ++ ++ + F++G+ D + D K K++ A
Sbjct: 622 LVHIIFNDFGPKRAAQFFDGVQRMINAFMTGIHTFSMGIGDTIA----DPKTVKVVESAI 677
Query: 225 RLGTEAACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCL 284
R E +I + Q +P + ++S L+ V N V
Sbjct: 678 RKAKEEVS-----------ALIENARQNRLERLPGM--TMKESFESHLNLVLNRARDVSG 724
Query: 285 PEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPY 344
NN++ MV +G+KGS +N Q++ +GQ +EGKR S RTLP F+
Sbjct: 725 TSAQRSLSENNNMKTMVLAGSKGSFINISQVTACVGQQNVEGKRIPFGFSHRTLPHFVKD 784
Query: 345 EVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTV 404
+ + ++ GFV+ ++TG+ P+EFFFH M GREGLIDTA+KT+ +GY+QR LVK LE V
Sbjct: 785 DYTGKSRGFVENSYLTGLDPEEFFFHAMGGREGLIDTAIKTAETGYIQRRLVKALEDAIV 844
Query: 405 HYDMTVRDSDLSLIQVLYGEDGLDVT 430
D +VR + + Q+ YGEDG D T
Sbjct: 845 RQDESVRSGNGLVYQIKYGEDGFDAT 870
Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 64/101 (63%), Gaps = 2/101 (1%)
Query: 561 DMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILM 620
++I K L + P E VG LAAQS+GEP+TQMTLNTFH AG VT+G+PRL+EI
Sbjct: 1032 EVIDAKILKAKITPNEMVGTLAAQSVGEPATQMTLNTFHLAGVAS-TVTMGVPRLKEIFN 1090
Query: 621 MATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADV 661
+ TK +KTPSM+I + K + A + + +T+ D+
Sbjct: 1091 V-TKNLKTPSMKIYLDREHGKSIEAAKTIQNEIECLTVKDL 1130
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 86/159 (54%), Gaps = 7/159 (4%)
Query: 861 EEKESKH-LLKTDGINVNFISQYRHLLDLN-KLYV-NDIHYMASTYGIEAANRVIIREVK 917
E+K+ K L+TDGI +SQ +N +L + ND+ +A T GIEAA I+RE+
Sbjct: 1260 EDKDRKEWYLQTDGI---CLSQILGNPAVNSRLTISNDLVEIAETLGIEAARESILRELT 1316
Query: 918 NVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQAS 976
V G V+ RH+SL+AD MT G + R+G+ ++ +++ +FE +E + A+
Sbjct: 1317 IVIDGNGSYVNYRHMSLLADVMTMRGYLCGITRHGVNKVGAGALKRSSFEETVEILLDAA 1376
Query: 977 MQGREDSLRAPSARVMLGQECRQGTGLFQLRNREKKKKK 1015
+ ++ R + +M+GQ GTG ++ KK K
Sbjct: 1377 LVSEKNICRGITENIMMGQLAPMGTGNIEIMLDMKKLDK 1415
>sp|P04050|RPB1_YEAST DNA-directed RNA polymerase II subunit RPB1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPO21 PE=1
SV=2
Length = 1733
Score = 221 bits (563), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 146/422 (34%), Positives = 217/422 (51%), Gaps = 49/422 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S L V Q + P+ P G++QD + KL+LRDTF+ + +N++Y +
Sbjct: 498 RAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLY---WVP 554
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGI-LDKKQFGSTQY 131
+ + P I KP PLW+GKQ+LS I N GI L + G+T
Sbjct: 555 DWDGVIPTPAIIKPKPLWSGKQILSVAIPN----------------GIHLQRFDEGTT-- 596
Query: 132 GLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFT 191
+ + D + I G+++ G+++KK GS+ GL+H V G + L + K+
Sbjct: 597 --LLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVN 654
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARR----LGTEAACNALGLPLDTDPEIIS 247
+L GF+ G+ D + R+ T+ I +A++ + EA N L
Sbjct: 655 FWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLL------------ 702
Query: 248 SQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKG 307
+ F + R DK + +V L + NN++ MV +G+KG
Sbjct: 703 -TAKHGMTLRESFEDNVVRFLNEARDKA-GRLAEVNLKD-------LNNVKQMVMAGSKG 753
Query: 308 STVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEF 367
S +N Q+S +GQ +EGKR A RTLP F + SP + GFV+ ++ G+ PQEF
Sbjct: 754 SFINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEF 813
Query: 368 FFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL 427
FFH M GREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S ++IQ +YGEDG+
Sbjct: 814 FFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGM 873
Query: 428 DV 429
D
Sbjct: 874 DA 875
Score = 147 bits (371), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 133/449 (29%), Positives = 210/449 (46%), Gaps = 69/449 (15%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
L S+ +PGE VGVLAAQSIGEP+TQMTLNTFHFAG VT G+PRL+EIL +A K +K
Sbjct: 1054 LRSVVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVA-KNMK 1112
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNY------ 681
TPS+ + P +++A + ++ T L+ V I + P+P
Sbjct: 1113 TPSLTVYLEPGHAADQEQAKLIRSAIEHTT----LKSVTIASEIYYDPDPRSTVIPEDEE 1168
Query: 682 --QMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQ 739
Q+ F + + P +L LE+ RAA K++ + Q ++
Sbjct: 1169 IIQLHFSLLDEEAEQSFDQQSP----------WLLRLEL---DRAAMNDKDLTMGQVGER 1215
Query: 740 MEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERM 799
++ ++D + V E+ DE+ ++ +V + + D E +E+ M
Sbjct: 1216 IKQTFKND--------------LFVIWSEDNDEKLIIRC--RVVRPKSLDAETEAEEDHM 1259
Query: 800 SEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNL 859
+ KIE N+ ++ V N +V YD+K +PS
Sbjct: 1260 LK--------------KIENTMLENITLRGVENIERVVM-MKYDRK---------VPSPT 1295
Query: 860 FEE-KESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKN 918
E KE + +L+TDG+N++ + +D ++Y N + GIEA + +EV N
Sbjct: 1296 GEYVKEPEWVLETDGVNLSEVMTVPG-IDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYN 1354
Query: 919 VFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASM 977
V A G V+ RH++L+ D MT G ++ R+G R N + + +FE +E + +A
Sbjct: 1355 VIASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGA 1414
Query: 978 QGREDSLRAPSARVMLGQECRQGTGLFQL 1006
D R S V+LGQ GTG F +
Sbjct: 1415 SAELDDCRGVSENVILGQMAPIGTGAFDV 1443
>sp|P35084|RPB1_DICDI DNA-directed RNA polymerase II subunit rpb1 OS=Dictyostelium
discoideum GN=polr2a PE=2 SV=2
Length = 1727
Score = 219 bits (559), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 138/416 (33%), Positives = 210/416 (50%), Gaps = 35/416 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE +M V Q + P+ P+ G++QD ++ + RD F+ + MN++ + +
Sbjct: 503 RAEVIEIMMVPRQIVSPQSNRPVMGIVQDTLLGSRLFTKRDCFMEKDLVMNIL---MWLP 559
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + + PP I KP LWTGKQ+ S +I ++ +IR + + K+ G
Sbjct: 560 SWDGKVPPPAILKPKQLWTGKQLFSLIIPDIN-----LIR----FTSTHNDKEPNECSAG 610
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
DT V I GELL+GIL K+ G+ ++H V + HG + + +
Sbjct: 611 ------DTRVIIERGELLAGILCKRSLGAANGSIIHVVMNEHGHDTCRLFIDQTQTVVNH 664
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+L GFT+G+ D + K T I+ A+ E A + P
Sbjct: 665 WLINRGFTMGIGDTIADSATMAKVTLTISSAKNQVKELIIKAQNKQFECQP--------- 715
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNT 312
+ I F ++++ D ++ Q L E NNL+ MV +G+KGS +N
Sbjct: 716 GKSVIETFEQKVNQVLNKARDTAGSSA-QDSLSED-------NNLKAMVTAGSKGSFINI 767
Query: 313 MQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCM 372
Q+ +GQ +EGKR RTLP F + P + GFV+ ++ G+ PQEFFFH M
Sbjct: 768 SQMMACVGQQNVEGKRIPFGFQSRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 827
Query: 373 AGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
GREGLIDTAVKTS +GY+QR LVK +E +++ YD TVR+S +IQ YGEDG+D
Sbjct: 828 GGREGLIDTAVKTSETGYIQRRLVKAMEDVSIKYDATVRNSLGDVIQFAYGEDGID 883
Score = 100 bits (250), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/102 (51%), Positives = 70/102 (68%), Gaps = 1/102 (0%)
Query: 566 KNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKA 625
K L +LA+PGE VG LAAQSIGEP+TQMTLNTFH+AG NVTLG+PRL+EI+ +A K
Sbjct: 1071 KFLQALAHPGEMVGALAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINIA-KQ 1129
Query: 626 IKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKI 667
+KTPS+ I P M + +A + + T+A+V +I
Sbjct: 1130 VKTPSLTIYLKPHMARDMDRAKIVKSQLEYTTLANVTSATEI 1171
Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 79/140 (56%), Gaps = 2/140 (1%)
Query: 868 LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 927
+L TDG+++ + + + D + NDI + GIEA +++E++ V + G V
Sbjct: 1323 ILDTDGVSLLEVMSHPDV-DHTRTTSNDIVEIIQVLGIEAVRNALLKELRAVISFDGSYV 1381
Query: 928 DPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRA 986
+ RHL+++AD MT+ G +A+ R+GI R+ + + +FE +E + A+M D ++
Sbjct: 1382 NYRHLAILADVMTYRGHLMAITRHGINRVETGPLMRCSFEETVEILMDAAMFSETDDVKG 1441
Query: 987 PSARVMLGQECRQGTGLFQL 1006
+ ++LGQ GTG F++
Sbjct: 1442 VTENIILGQLPPLGTGSFEV 1461
>sp|Q86AQ5|RPC1_DICDI DNA-directed RNA polymerase III subunit rpc1 OS=Dictyostelium
discoideum GN=polr3a PE=3 SV=1
Length = 1450
Score = 218 bits (556), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 146/420 (34%), Positives = 216/420 (51%), Gaps = 35/420 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA+ LM V++ + P++G PL QD + + +S RD F R + L+
Sbjct: 508 RAEATILMGVTNNLITPRNGEPLVAATQDFLTASYLISRRDAFYERYRFA-LMCTHFADA 566
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N I PP I KP+ LWTGKQ+ + L P K S +L + S Y
Sbjct: 567 NEHIDLPPPAILKPVELWTGKQIFEVL---LRPSVK---------SHVLCNFETRSRTYS 614
Query: 133 --LVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L D +V R+ EL+ G +DK G + L H + A + ++ LAKL
Sbjct: 615 KNLYMCPKDGYVYFRNSELMCGSIDKSIIGGGNKNSLFHILMRDFSPTIAANCMTRLAKL 674
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
+L GF++G+ DI ++ DRK+ +II A + C A+ L D E S Q
Sbjct: 675 CARFLGDQGFSIGIPDIKPAEDLDRKKREIIETAYK-----KC-AVFL---KDYESGSLQ 725
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPA-NNLQFMVESGAKGS 308
L + F A++++ L ++ ++ ++C + P N+ M G+KGS
Sbjct: 726 LSSGCSMEQTFEAKMNQT----LSQIRDDCGKLC-----VNDLPNYNSPLIMGLCGSKGS 776
Query: 309 TVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFF 368
+N Q+ C +GQ + G R + RT P F + +P++ GFV F TG+ P EFF
Sbjct: 777 NINIAQMICCVGQQIVNGTRIPNGFTNRTTPHFKHFAKNPKSKGFVSNSFYTGMIPTEFF 836
Query: 369 FHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
FH M GREGL+DTAVKT+ +GY+QR L+K LE L+ HYD TVRDS ++Q +YG+DGLD
Sbjct: 837 FHTMGGREGLVDTAVKTAETGYMQRRLMKALEDLSTHYDYTVRDSIGGIVQFIYGDDGLD 896
Score = 83.6 bits (205), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Query: 535 ISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMT 594
+ E A+ V R + ++ F D+ K + PG VG + AQSIGEP TQMT
Sbjct: 1060 LGERFANEHVVNQIHRITKTQIELFLDICLDKYSRARIEPGTAVGAIGAQSIGEPGTQMT 1119
Query: 595 LNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
L TFHFAG MNVTLG+PR++EI+ A K I TP
Sbjct: 1120 LKTFHFAGVASMNVTLGVPRIKEII-NAAKNISTP 1153
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 1/120 (0%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N I +T GIE A I+ E+ + +G+ +D RH+ L+AD M+ G + + R GI
Sbjct: 1319 NHIMECENTLGIETARNTIMSEIDMIMTSHGMSIDIRHVMLLADLMSFKGEILGITRFGI 1378
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNREKK 1012
++ S + +FE + + A++ R+D + S +++G GTGLF+L + K
Sbjct: 1379 AKMKESVLMLASFEKTTDHLFDAAVHHRQDDIVGVSECIIMGVVIPLGTGLFKLLRKSNK 1438
>sp|P24928|RPB1_HUMAN DNA-directed RNA polymerase II subunit RPB1 OS=Homo sapiens
GN=POLR2A PE=1 SV=2
Length = 1970
Score = 216 bits (551), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 148/416 (35%), Positives = 209/416 (50%), Gaps = 32/416 (7%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + P+ P+ G++QD + + K + RD FL R E MNL L L
Sbjct: 512 RAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNL----LMFL 567
Query: 73 NTEIRTLP-PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQY 131
+T +P P I KP PLWTGKQ+ S +I P IR D +
Sbjct: 568 STWDGKVPQPAILKPRPLWTGKQIFSLII----PGHINCIRTHSTHPDDEDSGPYKHISP 623
Query: 132 GLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFT 191
G DT V + +GEL+ GIL KK G++ LVH + G + S + +
Sbjct: 624 G------DTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVIN 677
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQ 251
+L G T+G+ D + + + I KA++ E A L+ P + L+
Sbjct: 678 NWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTP---GNTLR 734
Query: 252 EAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVN 311
+ F Q++R DK T + Q L E NN + MV SGAKGS +N
Sbjct: 735 QT------FENQVNRILNDARDK-TGSSAQKSLSE-------YNNFKSMVVSGAKGSKIN 780
Query: 312 TMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHC 371
Q+ ++GQ +EGKR RTLP F+ + P + GFV+ ++ G+ P EFFFH
Sbjct: 781 ISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHA 840
Query: 372 MAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL 427
M GREGLIDTAVKT+ +GY+QR L+K +E + V YD TVR+S ++Q+ YGEDGL
Sbjct: 841 MGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL 896
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 69/109 (63%), Gaps = 5/109 (4%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
++A+PGE VG LAAQS+GEP+TQMTLNTFH+AG NVTLG+PRL+E++ ++ K KTP
Sbjct: 1079 AIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKP-KTP 1137
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPH 678
S+ + FL + + + A R + R+ L KV + P P
Sbjct: 1138 SLTV-FL--LGQSARDAERAKDILCRLEHT-TLRKVTANTAIYYDPNPQ 1182
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 79/140 (56%), Gaps = 2/140 (1%)
Query: 868 LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 927
+L+TDG+++ + + + D + NDI + + GIEA + + RE+ +V + G V
Sbjct: 1335 ILETDGVSLMRVLSEKDV-DPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYV 1393
Query: 928 DPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRA 986
+ RHL+L+ D MT G +A+ R+G+ R + + K +FE ++ + +A+ G D ++
Sbjct: 1394 NYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKG 1453
Query: 987 PSARVMLGQECRQGTGLFQL 1006
S +MLGQ GTG F L
Sbjct: 1454 VSENIMLGQLAPAGTGCFDL 1473
>sp|P08775|RPB1_MOUSE DNA-directed RNA polymerase II subunit RPB1 OS=Mus musculus
GN=Polr2a PE=1 SV=3
Length = 1970
Score = 216 bits (551), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 148/416 (35%), Positives = 209/416 (50%), Gaps = 32/416 (7%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + P+ P+ G++QD + + K + RD FL R E MNL L L
Sbjct: 512 RAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNL----LMFL 567
Query: 73 NTEIRTLP-PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQY 131
+T +P P I KP PLWTGKQ+ S +I P IR D +
Sbjct: 568 STWDGKVPQPAILKPRPLWTGKQIFSLII----PGHINCIRTHSTHPDDEDSGPYKHISP 623
Query: 132 GLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFT 191
G DT V + +GEL+ GIL KK G++ LVH + G + S + +
Sbjct: 624 G------DTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVIN 677
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQ 251
+L G T+G+ D + + + I KA++ E A L+ P + L+
Sbjct: 678 NWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTP---GNTLR 734
Query: 252 EAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVN 311
+ F Q++R DK T + Q L E NN + MV SGAKGS +N
Sbjct: 735 QT------FENQVNRILNDARDK-TGSSAQKSLSE-------YNNFKSMVVSGAKGSKIN 780
Query: 312 TMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHC 371
Q+ ++GQ +EGKR RTLP F+ + P + GFV+ ++ G+ P EFFFH
Sbjct: 781 ISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHA 840
Query: 372 MAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL 427
M GREGLIDTAVKT+ +GY+QR L+K +E + V YD TVR+S ++Q+ YGEDGL
Sbjct: 841 MGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL 896
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 69/109 (63%), Gaps = 5/109 (4%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
++A+PGE VG LAAQS+GEP+TQMTLNTFH+AG NVTLG+PRL+E++ ++ K KTP
Sbjct: 1079 AIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKP-KTP 1137
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPH 678
S+ + FL + + + A R + R+ L KV + P P
Sbjct: 1138 SLTV-FL--LGQSARDAERAKDILCRLEHT-TLRKVTANTAIYYDPNPQ 1182
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 79/140 (56%), Gaps = 2/140 (1%)
Query: 868 LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 927
+L+TDG+++ + + + D + NDI + + GIEA + + RE+ +V + G V
Sbjct: 1335 ILETDGVSLMRVLSEKDV-DPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYV 1393
Query: 928 DPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRA 986
+ RHL+L+ D MT G +A+ R+G+ R + + K +FE ++ + +A+ G D ++
Sbjct: 1394 NYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKG 1453
Query: 987 PSARVMLGQECRQGTGLFQL 1006
S +MLGQ GTG F L
Sbjct: 1454 VSENIMLGQLAPAGTGCFDL 1473
>sp|P27625|RPC1_PLAFA DNA-directed RNA polymerase III subunit RPC1 OS=Plasmodium falciparum
PE=3 SV=1
Length = 2339
Score = 216 bits (550), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 143/421 (33%), Positives = 219/421 (52%), Gaps = 34/421 (8%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLV-YQALCI 71
+AEA +LMNV + PK+G + L QD + + ++ +DTFL R + L Y +
Sbjct: 628 RAEALYLMNVKHNLITPKNGEVIIALTQDFLSASYIITNKDTFLDRDTFCLLCSYFSDAS 687
Query: 72 LNTEIRTLP-PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
L E LP P I KP LWTGKQ++S V+I K+ II + ++++ +
Sbjct: 688 LYIE---LPIPAILKPKELWTGKQLIS-VLIKPNKKENTIINFE------IQEREYSNKF 737
Query: 131 YGLVH-AVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L H + D++V EL+ G L KK GS++YGL + + + + A+ +++ L+KL
Sbjct: 738 GDLKHLCLNDSYVCFYKSELICGSLGKKVLGSSKYGLFYYLIHHNSSHIALKIMNRLSKL 797
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
+ Y G T+G+ D+ Q K+ ++ K G E N + L + +I
Sbjct: 798 TSRYFSNKGMTIGIDDVRPSQTLTEKKKDLLLK----GYEKVNNEIILYNEKKMQIQPGC 853
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVC--LPEGLIEPFPANNLQFMVESGAKG 307
E I + KS+LD + N+ + C L +P M SGAKG
Sbjct: 854 TLEETLEI---------KVKSILDDLRNDAGKTCNQYLHYLNKPL------IMFNSGAKG 898
Query: 308 STVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEF 367
+ +N Q+ +GQ + G+R RTLP F + + GFV F TG+ P EF
Sbjct: 899 ALINIAQMIACVGQQNVAGQRIQNGFINRTLPHFHFHCKDSESRGFVQNSFYTGLSPTEF 958
Query: 368 FFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL 427
FFH M+GREGL+DTAVKT+ +GY+QR L+K LE L++HYD +VR D ++Q +YG+D L
Sbjct: 959 FFHTMSGREGLVDTAVKTAETGYMQRRLMKALEDLSIHYDYSVRSCDKQIVQFIYGDDAL 1018
Query: 428 D 428
+
Sbjct: 1019 N 1019
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 59/84 (70%), Gaps = 4/84 (4%)
Query: 555 HVDKFYDMIF---YKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLG 611
++ + Y IF YK ++ PG+ VG ++AQSIGEP TQMTL TFHFAG MNVTLG
Sbjct: 1757 NLKQLYLFIFFNIYKYFKYISTPGDAVGSISAQSIGEPGTQMTLKTFHFAGVASMNVTLG 1816
Query: 612 IPRLREILMMATKAIKTPSMEIPF 635
+PR++EI+ A+ +I+TP + IP
Sbjct: 1817 VPRIKEII-NASNSIQTPILNIPL 1839
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D + N + + GIEAA II E+K Y I++D RH+ L+AD M +G
Sbjct: 2191 VDFKHIISNHVINVFQVLGIEAARITIINEIKKCVEAYSIDIDIRHIMLLADIMAFTGDI 2250
Query: 946 VAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
+ +NR GI + S + +FE E + +S D + S +++G+ GTG F
Sbjct: 2251 LGINRFGIQKARQSTLMLASFEETNEHLFVSSFFKNVDEINNISESIIVGKNIPIGTGAF 2310
Query: 1005 QL 1006
QL
Sbjct: 2311 QL 2312
>sp|P04052|RPB1_DROME DNA-directed RNA polymerase II subunit RPB1 OS=Drosophila
melanogaster GN=RpII215 PE=3 SV=4
Length = 1887
Score = 215 bits (548), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 142/416 (34%), Positives = 213/416 (51%), Gaps = 32/416 (7%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE + Q + P+ P+ G++QD + + K++ RD F+TR + MNL L L
Sbjct: 504 RAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQVMNL----LMFL 559
Query: 73 NTEIRTLP-PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQY 131
T +P P I KP PLWTGKQ+ S +I P + +IR D+ +
Sbjct: 560 PTWDAKMPQPCILKPRPLWTGKQIFSLII----PGNVNMIRTHSTHPDEEDEGPYKWISP 615
Query: 132 GLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFT 191
G DT V + HGEL+ GIL KK G++ L+H + G + A + +
Sbjct: 616 G------DTKVMVEHGELIMGILCKKSLGTSAGSLLHICFLELGHDIAGRFYGNIQTVIN 669
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQ 251
+L G ++G+ D + + + + I KA+ A + L+ P + L+
Sbjct: 670 NWLLFEGHSIGIGDTIADPQTYNEIQQAIKKAKDDVINVIQKAHNMELEPTP---GNTLR 726
Query: 252 EAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVN 311
+ F +++R DK + + L E NNL+ MV SG+KGS +N
Sbjct: 727 QT------FENKVNRILNDARDKTGGSAKK-----SLTE---YNNLKAMVVSGSKGSNIN 772
Query: 312 TMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHC 371
Q+ +GQ +EGKR RTLP F+ + P + GFV+ ++ G+ P EF+FH
Sbjct: 773 ISQVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHA 832
Query: 372 MAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL 427
M GREGLIDTAVKT+ +GY+QR L+K +E + V+YD TVR+S LIQ+ YGEDGL
Sbjct: 833 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGL 888
Score = 136 bits (343), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 125/441 (28%), Positives = 202/441 (45%), Gaps = 54/441 (12%)
Query: 572 ANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSM 631
ANPGE VG LAAQS+GEP+TQMTLNTFHFAG NVTLG+PRL+EI+ ++ K K PS+
Sbjct: 1073 ANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKP-KAPSL 1131
Query: 632 EIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPH---MNYQMKFCFI 688
+ + +KA + + T L KV + P+P ++ +F
Sbjct: 1132 TVFLTGGAARDAEKAKNVLCRLEHTT----LRKVTANTAIYYDPDPQRTVISEDQEF--- 1184
Query: 689 PAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDVEDDE 748
++Y + P++I R IE R +M D E
Sbjct: 1185 -VNVYYEMPDFDPTRISPWLLR----------------------IELDRKRMTDKKLTME 1221
Query: 749 GEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNT 808
+ AE G D++ D D + ++ E+N F +DE+ ++ EDD
Sbjct: 1222 -QIAEKINVGFGE-DLNCIFNDDNADKLVLRIRIMNNEENKF---QDEDEAVDKMEDD-- 1274
Query: 809 SNIGERFKIEFRDSTNVFVKDVVNQ--HNIVHKYSYDKKNHMWCKLLFLPSNLFEEKESK 866
+ R + D+ Q I Y + + +++ + F+ +
Sbjct: 1275 --------MFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAI-GE 1325
Query: 867 HLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIE 926
LL+TDG ++ + R +D + NDI + GIEA + + +E+ V YG+
Sbjct: 1326 WLLETDGTSMMKVLSERD-VDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLY 1384
Query: 927 VDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLR 985
V+ RHL+L+ D MT G +A+ R+GI R + + + +FE ++ + A+ D +R
Sbjct: 1385 VNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAETDPMR 1444
Query: 986 APSARVMLGQECRQGTGLFQL 1006
S +++GQ + GTG F L
Sbjct: 1445 GVSENIIMGQLPKMGTGCFDL 1465
>sp|P35074|RPB1_CAEBR DNA-directed RNA polymerase II subunit RPB1 OS=Caenorhabditis
briggsae GN=rpb-1 PE=3 SV=2
Length = 1853
Score = 213 bits (541), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 145/417 (34%), Positives = 211/417 (50%), Gaps = 32/417 (7%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE + V Q + P+ P+ G++QD + + ++ RD F+ M+L L L
Sbjct: 506 RAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDIFIDWPFMMDL----LMYL 561
Query: 73 NTEIRTLP-PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQY 131
T +P P I KP PLWTGKQV S +I P + ++R D +
Sbjct: 562 PTWDGKVPQPAILKPKPLWTGKQVFSLII----PGNVNVLRTHSTHPDSEDSGPYKWISP 617
Query: 132 GLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFT 191
G DT V I HGELLSGI+ K G + L+H V G E A + S + +
Sbjct: 618 G------DTKVLIEHGELLSGIVCSKTVGKSAGNLLHVVALELGHEIAANFYSHIQTVIN 671
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQ 251
+L R G T+G+ D + Q I KA++ + A L+ P + L+
Sbjct: 672 AWLLREGHTIGIGDTIADQSTYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTP---GNTLR 728
Query: 252 EAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVN 311
+ F ++++ D+ T + Q L E NN + MV SG+KGS +N
Sbjct: 729 QT------FENKVNQILNDARDR-TGSSAQKSLSE-------FNNFKSMVVSGSKGSKIN 774
Query: 312 TMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHC 371
Q+ +GQ +EGKR RTLP F+ + P + GFV+ ++ G+ P EFFFH
Sbjct: 775 ISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHA 834
Query: 372 MAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
M GREGLIDTAVKT+ +GY+QR L+K +E + V+YD TVR+S ++Q+ YGEDGLD
Sbjct: 835 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLD 891
Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 68/108 (62%), Gaps = 5/108 (4%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
++A PGE VG LAAQS+GEP+TQMTLNTFH+AG NVTLG+PRL+EI+ + +K +KTP
Sbjct: 1073 AIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINV-SKQLKTP 1131
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEP 677
S+ + K +KA + + T L+KV + P+P
Sbjct: 1132 SLTVFLTGAAAKDPEKAKDVLCKLEHTT----LKKVTCNTAIYYDPDP 1175
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 76/140 (54%), Gaps = 2/140 (1%)
Query: 868 LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 927
+L+TDG + + R + D + NDI + GIEA + I +E+ NV + G V
Sbjct: 1328 ILETDGTALLRVLSERQI-DPVRTTSNDICEIFEVLGIEAVRKSIEKEMDNVISFDGSYV 1386
Query: 928 DPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRA 986
+ RHL+L+ D MT G +A+ R+GI R + + +FE ++ + +AS+ D ++
Sbjct: 1387 NYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEASVHAEVDPVKG 1446
Query: 987 PSARVMLGQECRQGTGLFQL 1006
S +MLGQ R GTG F L
Sbjct: 1447 VSENIMLGQLARCGTGCFDL 1466
>sp|P16356|RPB1_CAEEL DNA-directed RNA polymerase II subunit RPB1 OS=Caenorhabditis
elegans GN=ama-1 PE=1 SV=3
Length = 1856
Score = 213 bits (541), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 145/417 (34%), Positives = 211/417 (50%), Gaps = 32/417 (7%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE + V Q + P+ P+ G++QD + + ++ RD F+ M+L L L
Sbjct: 506 RAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFIDWPFMMDL----LMYL 561
Query: 73 NTEIRTLP-PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQY 131
T +P P I KP PLWTGKQV S +I P + ++R D +
Sbjct: 562 PTWDGKVPQPAILKPKPLWTGKQVFSLII----PGNVNVLRTHSTHPDSEDSGPYKWISP 617
Query: 132 GLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFT 191
G DT V I HGELLSGI+ K G + L+H V G E A + S + +
Sbjct: 618 G------DTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTVIN 671
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQ 251
+L R G T+G+ D + Q I KA++ + A L+ P + L+
Sbjct: 672 AWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTP---GNTLR 728
Query: 252 EAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVN 311
+ F ++++ D+ T + Q L E NN + MV SG+KGS +N
Sbjct: 729 QT------FENKVNQILNDARDR-TGSSAQKSLSE-------FNNFKSMVVSGSKGSKIN 774
Query: 312 TMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHC 371
Q+ +GQ +EGKR RTLP F+ + P + GFV+ ++ G+ P EFFFH
Sbjct: 775 ISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHA 834
Query: 372 MAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
M GREGLIDTAVKT+ +GY+QR L+K +E + V+YD TVR+S ++Q+ YGEDGLD
Sbjct: 835 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLD 891
Score = 139 bits (351), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 134/471 (28%), Positives = 220/471 (46%), Gaps = 66/471 (14%)
Query: 547 TKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDM 606
TK + ++ D I + ++A PGE VG LAAQS+GEP+TQMTLNTFH+AG
Sbjct: 1050 TKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAK 1109
Query: 607 NVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVK 666
NVTLG+PRL+EI+ ++ K +KTPS+ + K +KA + + T L+KV
Sbjct: 1110 NVTLGVPRLKEIINVS-KTLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTT----LKKVT 1164
Query: 667 IKEWLEISPEPHMN-------YQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVA 719
+ P+P + F +P H D + P + +RK + + ++
Sbjct: 1165 CNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDH---DLSRTSPWLLRIELDRKRMVDKKLT 1221
Query: 720 ---IAKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAV 776
IA R G N + DD E + R+ ++ +++ + ++
Sbjct: 1222 MEMIADRIHGGFGN--------DVHTIYTDDNAE------KLVFRLRIAGEDKGEAQE-- 1265
Query: 777 QSHKKVNQEEDNDFEEPEDEERMSEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNI 836
++V++ ED+ F + +S D I K+ +NQ N
Sbjct: 1266 ---EQVDKMEDDVFLRCIEANMLS----DLTLQGIPAISKV------------YMNQPN- 1305
Query: 837 VHKYSYDKKNHMWCKLLFLPSNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDI 896
+ DKK +++ P F+ + +L+TDG + + R +D + NDI
Sbjct: 1306 ----TDDKK-----RIIITPEGGFKSV-ADWILETDGTALLRVLSERQ-IDPVRTTSNDI 1354
Query: 897 HYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RL 955
+ GIEA + I RE+ NV + G V+ RHL+L+ D MT G +A+ R+GI R
Sbjct: 1355 CEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQ 1414
Query: 956 NPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+ + +FE ++ + +A++ ED ++ S +MLGQ R GTG F L
Sbjct: 1415 EVGALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDL 1465
>sp|P17546|RPB1A_TRYBB DNA-directed RNA polymerase II subunit RPB1-A OS=Trypanosoma brucei
brucei GN=TRP4.8 PE=1 SV=1
Length = 1766
Score = 211 bits (537), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 133/425 (31%), Positives = 213/425 (50%), Gaps = 52/425 (12%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S KAE +M V ++ P +P G++QD ++ +L+ +DTFL + +
Sbjct: 500 SLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDK------YFVQ 553
Query: 69 LCILNTEIRTLP-PTIWKPMPLWTGKQVLSTVIINL----TPKDKVIIRHGELLSGILDK 123
L ++ LP P I KP PLWTGKQV S ++ + TP+D+ H
Sbjct: 554 SVALWLDLWQLPIPAILKPRPLWTGKQVFSLILPEVNHPATPQDRPPFPHN--------- 604
Query: 124 KQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLL 183
D+ V IR G+LL G + K G+ L+H +++ HG++ +
Sbjct: 605 ---------------DSVVMIRRGQLLCGPITKSIVGAAPGSLIHVIFNEHGSDEVARFI 649
Query: 184 SCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDP 243
+ + ++ T +L GF++GV+D + + R+ ++ K RR + A L+
Sbjct: 650 NGVQRVTTFFLLNFGFSVGVQDTVADSDTLRQMNDVLVKTRRNVEKIGAAANNRTLNRKA 709
Query: 244 EIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVES 303
+ Q EA + +++ + K +N+ + N+ + M+E+
Sbjct: 710 GMTLLQSFEA-----DVNSALNKCREEAAKKALSNVRRT------------NSFKVMIEA 752
Query: 304 GAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQ 363
G+KG+ +N QI+ +GQ + G R RTLP F+ + + G + ++ G++
Sbjct: 753 GSKGTDLNICQIAVFVGQQNVAGSRIPFGFRRRTLPHFMLDDYGETSRGMANRGYVEGLK 812
Query: 364 PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYG 423
P EFFFH MAGREGLIDTAVKTS +GYLQR L+K LE + YD TVR+++ LIQ +YG
Sbjct: 813 PHEFFFHTMAGREGLIDTAVKTSDTGYLQRKLIKALEDVHAAYDGTVRNANDELIQFMYG 872
Query: 424 EDGLD 428
EDGLD
Sbjct: 873 EDGLD 877
Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 63/108 (58%), Gaps = 6/108 (5%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
SL PGEN+G +AAQS GEP+TQMTLNTFH AG NVTLG+PRL E+L + ++ K
Sbjct: 1077 SLTTPGENIGAIAAQSCGEPATQMTLNTFHNAGISSKNVTLGVPRLLELLNV-SRNQKHA 1135
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEP 677
SM + P P EK+ + A+ + LE + + P+P
Sbjct: 1136 SMTVSLFP--PYDEKRNAQKAQHLIEYC---TLESITRRIQFIYDPDP 1178
Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 72/126 (57%), Gaps = 2/126 (1%)
Query: 883 RHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHS 942
+++++ K N + + S GIEAA ++ E++ + YG+ ++ RH +++ D +
Sbjct: 1345 KNIINAVKTSSNKVPEVCSLLGIEAARSKMLTELREAYLAYGLNINYRHYTILVDTICQH 1404
Query: 943 GTYVAMNRNGIRLNPSF--IQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQG 1000
G +A++R+GI + + + + +FE ++ + A+ G D +R SA ++LG + R G
Sbjct: 1405 GYLMAVSRSGINRSDTSGPLMRCSFEETVKVLMAAASFGECDPVRGVSANLVLGNQARVG 1464
Query: 1001 TGLFQL 1006
TGLF L
Sbjct: 1465 TGLFDL 1470
>sp|P17545|RPB1B_TRYBB DNA-directed RNA polymerase II subunit RPB1-B OS=Trypanosoma brucei
brucei GN=TRP5.9 PE=1 SV=1
Length = 1766
Score = 211 bits (537), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 133/425 (31%), Positives = 213/425 (50%), Gaps = 52/425 (12%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S KAE +M V ++ P +P G++QD ++ +L+ +DTFL + +
Sbjct: 500 SLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFLDK------YFVQ 553
Query: 69 LCILNTEIRTLP-PTIWKPMPLWTGKQVLSTVIINL----TPKDKVIIRHGELLSGILDK 123
L ++ LP P I KP PLWTGKQV S ++ + TP+D+ H
Sbjct: 554 SVALWLDLWQLPIPAILKPRPLWTGKQVFSLILPEVNHPATPQDRPPFPHN--------- 604
Query: 124 KQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLL 183
D+ V IR G+LL G + K G+ L+H +++ HG++ +
Sbjct: 605 ---------------DSVVMIRRGQLLCGPITKSIVGAAPGSLIHVIFNEHGSDEVARFI 649
Query: 184 SCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDP 243
+ + ++ T +L GF++GV+D + + R+ ++ K RR + A L+
Sbjct: 650 NGVQRVTTFFLLNFGFSVGVQDTVADSDTLRQMNDVLVKTRRNVEKIGAAANNRTLNRKA 709
Query: 244 EIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVES 303
+ Q EA + +++ + K +N+ + N+ + M+E+
Sbjct: 710 GMTLLQSFEA-----DVNSALNKCREEAAKKALSNVRRT------------NSFKVMIEA 752
Query: 304 GAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQ 363
G+KG+ +N QI+ +GQ + G R RTLP F+ + + G + ++ G++
Sbjct: 753 GSKGTDLNICQIAVFVGQQNVAGSRIPFGFRRRTLPHFMLDDYGETSRGMANRGYVEGLK 812
Query: 364 PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYG 423
P EFFFH MAGREGLIDTAVKTS +GYLQR L+K LE + YD TVR+++ LIQ +YG
Sbjct: 813 PHEFFFHTMAGREGLIDTAVKTSDTGYLQRKLIKALEDVHAAYDGTVRNANDELIQFMYG 872
Query: 424 EDGLD 428
EDGLD
Sbjct: 873 EDGLD 877
Score = 80.5 bits (197), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 63/108 (58%), Gaps = 6/108 (5%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
SL PGEN+G +AAQS GEP+TQMTLNTFH AG NVTLG+PRL E+L + ++ K
Sbjct: 1077 SLTTPGENIGAIAAQSCGEPATQMTLNTFHNAGISSKNVTLGVPRLLELLNV-SRNQKHA 1135
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEP 677
SM + P P EK+ + A+ + LE + + P+P
Sbjct: 1136 SMTVSLFP--PYDEKRNAQKAQHLIEYC---TLESITRRIQFIYDPDP 1178
Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 72/126 (57%), Gaps = 2/126 (1%)
Query: 883 RHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHS 942
+++++ K N + + S GIEAA ++ E++ + YG+ ++ RH +++ D +
Sbjct: 1345 KNIINAVKTSSNKVPEVCSLLGIEAARSKMLTELREAYLAYGLNINYRHYTILVDTICQH 1404
Query: 943 GTYVAMNRNGIRLNPSF--IQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQG 1000
G +A++R+GI + + + + +FE ++ + A+ G D +R SA ++LG + R G
Sbjct: 1405 GYLMAVSRSGINRSDTSGPLMRCSFEETVKVLMAAASFGECDPVRGVSANLVLGNQARVG 1464
Query: 1001 TGLFQL 1006
TGLF L
Sbjct: 1465 TGLFDL 1470
>sp|P08968|RPC1_TRYBB DNA-directed RNA polymerase III subunit RPC1 OS=Trypanosoma brucei
brucei PE=3 SV=1
Length = 1530
Score = 194 bits (492), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 140/436 (32%), Positives = 218/436 (50%), Gaps = 37/436 (8%)
Query: 1 MDGWTQNASHFL-----KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTF 55
DG N HF+ +AEA LM+ + + K+G P+ QD + + ++ RD F
Sbjct: 504 FDGDEMNV-HFVQTEKARAEALQLMSTARNIISAKNGEPIIACTQDFLAAAYLVTSRDVF 562
Query: 56 LTRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGE 115
R E+ +V L + T+ R P I KP+ LWTGKQ+ +I+ +P+ V
Sbjct: 563 FDRGEFSQMVSHWLGPV-TQFRLPIPAILKPVELWTGKQLFE-LIVRPSPEVDV------ 614
Query: 116 LLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQF-GSTQYGLVHAVWDTH 174
LLS K + T+ G + +V +SG LDKK G + GL +
Sbjct: 615 LLSFEAPTKFY--TRKGKHDCAEEGYVAFLDSCFISGRLDKKLLGGGAKDGLFARLHTIA 672
Query: 175 GAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNA 234
G + ++S +A+ + YL GF+LG+ D+ E ++++ ++ ++ + C+
Sbjct: 673 GGGYTARVMSRIAQFTSRYLTNYGFSLGLGDVAPTPELNKQKAAVLARSVEV-----CDG 727
Query: 235 LGLPLDTDPEIISSQLQEAYASIPQF--RAQIDRQYKSLLDKVTNNINQVCLPEGLIEPF 292
L I S +P + ++ + + L KV + + I
Sbjct: 728 L----------IKSAKTGRMIPLPGLTVKQSLEARLNTELSKVRDECGTAAVQTLSIH-- 775
Query: 293 PANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGG 352
N MV+SG+KGS +N Q+ +GQ + GKR R+LP F +E +P A G
Sbjct: 776 -NNTPLIMVQSGSKGSALNIAQMMACVGQQTVSGKRILDAFQDRSLPHFHRFEEAPAARG 834
Query: 353 FVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRD 412
FV F +G+ P EFFFH MAGREGL+DTAVKT+ +GY+ R L+K +E L+V YD TVR+
Sbjct: 835 FVANSFYSGLSPTEFFFHTMAGREGLVDTAVKTAETGYIYRRLMKAMENLSVRYDGTVRN 894
Query: 413 SDLSLIQVLYGEDGLD 428
+ +IQ+ +GEDGLD
Sbjct: 895 TKGDVIQLRFGEDGLD 910
Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 73/135 (54%), Gaps = 8/135 (5%)
Query: 556 VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRL 615
V +F K L PG G +AAQS+GEPSTQMTL TFHFAG M++T G+PRL
Sbjct: 1123 VTRFIAQCASKYLRKACEPGTPCGAIAAQSVGEPSTQMTLRTFHFAGVASMSITQGVPRL 1182
Query: 616 REILMMATKAIKTPSMEIPFL-----PDMPKLEKKANRLAKS-MTRITMADVL-EKVKIK 668
E++ A + I TP + P L + ++ +K R K+ + R+ + +V+ E V++
Sbjct: 1183 VEVI-NANRNIATPVVTAPVLLMEGEENHCEIFRKRARFVKAQIERVLLREVVSEIVEVC 1241
Query: 669 EWLEISPEPHMNYQM 683
E H+N +
Sbjct: 1242 SDTEFYLRVHLNMSV 1256
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 65/122 (53%), Gaps = 1/122 (0%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D ++ N + + GIEAA RVI+ E++N+ Y + +D RH+ L+AD MT G
Sbjct: 1362 VDSTRVVCNHVAVVERVLGIEAARRVIVDEIQNILKAYSLSIDVRHVYLLADLMTQRGVV 1421
Query: 946 VAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
+ + R GI ++N + + +FE + + A+ R D + S +++G+ GT F
Sbjct: 1422 LGITRYGIQKMNFNVLTMASFERTTDHLYNAAATQRVDRDLSVSDSIIVGKPVPLGTTSF 1481
Query: 1005 QL 1006
L
Sbjct: 1482 DL 1483
>sp|Q7T6X5|RPO1_MIMIV DNA-directed RNA polymerase subunit 1 OS=Acanthamoeba polyphaga
mimivirus GN=RPO1 PE=1 SV=2
Length = 1495
Score = 193 bits (490), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 161/589 (27%), Positives = 272/589 (46%), Gaps = 93/589 (15%)
Query: 141 HVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFT 200
+ I++GEL G L K + S ++ +W +G++ + ++ +L R G+T
Sbjct: 610 QLKIKNGELTDGTLGKSEISS----ILQRIWFQYGSKETQEFIDDAQRMILQFLMRYGYT 665
Query: 201 LGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQEAYASIPQF 260
+ ++D ++ ++ ++ +I R+ A D DP +++ F
Sbjct: 666 VSIKDTVIGEKVNQYIYDLIETKRK-----ETLAFITEYDNDPYVMTKD---------AF 711
Query: 261 RAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFM-VESGAKGSTVNTMQISCLL 319
++ KS+ D++ N + + F N+ F+ + SG+ G +N QI+ +
Sbjct: 712 EIKLQENLKSVQDEIKNTV---------MRNFDKNSGIFIAISSGSSGEPMNAGQIAGCI 762
Query: 320 GQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLI 379
GQ+ +EGKR + +GRTLP F ++ S + GF F+ G+ P EFFF MAGREG+I
Sbjct: 763 GQVIVEGKRIQIRFNGRTLPMFPKFDDSAFSRGFCRNSFIEGLGPFEFFFQVMAGREGII 822
Query: 380 DTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD----------- 428
+TA+KT+ +GY+QR LVK LE + YD TVR+++ LI +YG++G++
Sbjct: 823 NTAIKTADTGYIQRKLVKMLEDIKQEYDGTVRNANGKLISCVYGDNGINTENQVDQKIDL 882
Query: 429 VTKRQYLTDKQFSFLEDNIKWICS-------YKVILN--------LLKKHPLSLALLLLL 473
++ + + ED IK++ Y LN ++ + L+ L
Sbjct: 883 ISANDNKVRNDYVYTEDEIKYLIKNHKTDKRYTTDLNNSLYRKLISMRDQLRRIQRLVNL 942
Query: 474 T---FKSSGK-----PNFIFS--------------PHRTKFTMDLLEQWYQLDDKARKKY 511
T FK + K FIF+ P+ + + +++ Y D KY
Sbjct: 943 TSAEFKETYKMPVDIQQFIFNIINRDVRNNNVVVDPY---YVLKMIKDMYYGSDSKIMKY 999
Query: 512 RK---KFKACPQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNL 568
+ K + I + ++ V K++K D VD F I +
Sbjct: 1000 NNRTSRIKKEDEKRIKFLMKIYLYDVLAPKKCTHVYKFSKQEFDEI-VDYFKKTI----M 1054
Query: 569 LSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKT 628
L+ GE VG +AAQSIGEP TQ L +FH +G G V+ G+ R++E+L ++ K IKT
Sbjct: 1055 LAKVEGGEMVGFVAAQSIGEPVTQTNLKSFHKSGTGK-TVSGGLVRVKELLGIS-KNIKT 1112
Query: 629 PSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEP 677
P EI + A+R+A + T+ DV+EK + PEP
Sbjct: 1113 PITEIILEEKYKNDKITASRIASYLKYTTLRDVVEKADVI----YDPEP 1157
Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 82/145 (56%), Gaps = 2/145 (1%)
Query: 863 KESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 922
K+ ++++ +GIN++ +SQ + DL + NDI + YG+EAA I+E
Sbjct: 1312 KKKQYVIIAEGINLSEMSQINGI-DLLRTKCNDIVTIYEMYGVEAARTAFIKEFTAAIES 1370
Query: 923 YGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGRE 981
G + +H+ ++AD +TH G + +NR+G +L+ + +FE +E++ A++ G
Sbjct: 1371 SGGFSNYQHIEILADAITHMGGLIPVNRHGANKLDTDPFSRASFEKTVEQLLAAAVFGES 1430
Query: 982 DSLRAPSARVMLGQECRQGTGLFQL 1006
D +R+ SAR+M+G GTG F L
Sbjct: 1431 DHMRSVSARIMVGALINGGTGCFDL 1455
>sp|P31813|RPOA1_THECE DNA-directed RNA polymerase subunit A' OS=Thermococcus celer
GN=rpoA1 PE=3 SV=1
Length = 905
Score = 185 bits (469), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 137/433 (31%), Positives = 204/433 (47%), Gaps = 49/433 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + + P+ G PL IQDH+ G L+ + R E V Q L
Sbjct: 478 QAEAKILMEVQNHIISPRYGGPLIAGIQDHISGGYLLTREGAYFERTE----VEQMLMFA 533
Query: 73 NTEIRTLPPT--IWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL---------LSGIL 121
++ LP + + LW+GK + S L PKD I +L L ++
Sbjct: 534 GVDVDRLPEPDKVENGVELWSGKTIFSL----LLPKDLTIWYRNKLCDEPGRCEALEKLI 589
Query: 122 DKKQFGSTQYGLVHAV-WDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAI 180
++K + V A+ +D I +G+LLSG +DK +G L+ + +G E A
Sbjct: 590 EEKLIPDEEE--VRALAYDGFTYILNGKLLSGAIDKTAYGREDGKLLDIIVREYGVERAR 647
Query: 181 SLLSCLAKLFTVYLQRVGFTLGVRD-ILVRQERDRKRTKIINKARRLG--TEAACNAL-- 235
L + KL + GFT + D L + DR R I R+ EA N
Sbjct: 648 QFLDQVTKLAIWVITHKGFTTAIDDEDLPTEALDRIREIIREAEERVNRLIEAYRNGELE 707
Query: 236 GLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPAN 295
+P T E + S++ A A ++ +Y + +N
Sbjct: 708 PIPGKTLEETLESKIMAALAEARDNAGKVAERYLGM----------------------SN 745
Query: 296 NLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVD 355
+ M ++GA+G +N Q++ +LGQ + GKR R L F P ++ RA GFV
Sbjct: 746 HAVIMAKTGARGKILNITQMAAMLGQQSIRGKRLYRGYRERVLTHFKPGDLGARARGFVI 805
Query: 356 GRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDL 415
+ +G+ PQE+FFH M GREGL+DTAV+T++SGY+QR L+ L+ L V YD TVRD
Sbjct: 806 NSYKSGLTPQEYFFHAMGGREGLVDTAVRTAQSGYMQRRLINALQDLKVEYDGTVRDPTG 865
Query: 416 SLIQVLYGEDGLD 428
++Q YGEDG+D
Sbjct: 866 IIVQFRYGEDGID 878
>sp|Q980R2|RPOA1_SULSO DNA-directed RNA polymerase subunit A' OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rpoA1
PE=1 SV=1
Length = 880
Score = 180 bits (456), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 134/417 (32%), Positives = 200/417 (47%), Gaps = 38/417 (9%)
Query: 14 AEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCILN 73
AEA +M V + P+ G P+ G QD+ ISGA L T L E Q L + +
Sbjct: 474 AEAKEIMLVHKNIITPRYGGPIIGAAQDY-ISGAYLLTVKTTLLTKEEAQ---QILGVAD 529
Query: 74 TEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYGL 133
+I P I P +TGKQV+S + PKD + SG K
Sbjct: 530 VKIDLGEPAILAPREYYTGKQVISAFL----PKDFNFHGQANVSSGPRLCKNEDCPH--- 582
Query: 134 VHAVWDTHVTIRHGELLSGILDKKQFGSTQ-YGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
D++V I++G LL G+ DKK G+ Q ++H + + E+ L+ L ++F
Sbjct: 583 -----DSYVVIKNGILLEGVFDKKAIGNQQPESILHWLIKEYSDEYGKWLMDNLFRVFIR 637
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+++ GFT+ + D+ + D + +I N+ R E +I
Sbjct: 638 FVELQGFTMRLEDVSLG---DDVKKEIYNEIDRAKVEVD------------NLIQKYKNG 682
Query: 253 AYASIP--QFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTV 310
IP ++ LDK+ + + ++PF N M +GA+GS +
Sbjct: 683 ELEPIPGRTLEESLENYILDTLDKLRSTAGDIA--SKYLDPF--NFAYVMARTGARGSVL 738
Query: 311 NTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFH 370
N Q++ +LGQ + G+R RTLP F PY++SP A GF+ F TG++P E FFH
Sbjct: 739 NITQMAAMLGQQSVRGERIKRGYMTRTLPHFKPYDISPEARGFIYSSFRTGLKPTELFFH 798
Query: 371 CMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL 427
GREGL+DTAV+TS+SGY+QR L+ L L YD TVR ++QV YG+DG+
Sbjct: 799 AAGGREGLVDTAVRTSQSGYMQRRLINALSDLRAEYDGTVRSLYGEVVQVAYGDDGV 855
>sp|P14248|RPB1_PLAFD DNA-directed RNA polymerase II subunit RPB1 OS=Plasmodium falciparum
(isolate CDC / Honduras) GN=RPII PE=3 SV=1
Length = 2452
Score = 179 bits (455), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 110/299 (36%), Positives = 161/299 (53%), Gaps = 31/299 (10%)
Query: 136 AVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQ 195
++ D V I++ ELLSGI+ K+ GS+ L+H +W G + LS L K+ +L+
Sbjct: 759 SINDGKVIIKNNELLSGIICKRTVGSSSGSLIHVLWHEMGPDKTKDFLSALQKVTNNWLE 818
Query: 196 RVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQEAYA 255
VGFT+ DI+ K++ K R + LD +S +++A
Sbjct: 819 YVGFTVSCSDIIASN-------KVLGKVREI------------LDKSKSEVSKLVEKAQK 859
Query: 256 SIPQFRAQIDRQ-YKSLLDKVTNNINQV------CLPEGLIEPFPANNLQFMVESGAKGS 308
+ Q + Y+S +V N +N E L E NN+ MV SG+KGS
Sbjct: 860 G--ELECQPGKSLYESFETRVNNELNCAREMAGKVASESLDE---RNNIFSMVASGSKGS 914
Query: 309 TVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFF 368
+N QI +GQ +EGKR + R+LP F+ ++ P + GFV +++G+ PQE F
Sbjct: 915 IINISQIISCVGQQNVEGKRIPFGFNHRSLPHFIKFDYGPESRGFVSNSYLSGLTPQEVF 974
Query: 369 FHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL 427
FH M GREG+IDTA KTS +GY+QR L+K +E + V YD TVR+S +IQ LYGEDG+
Sbjct: 975 FHAMGGREGIIDTACKTSETGYIQRRLIKAMEDVMVQYDRTVRNSYGDIIQFLYGEDGM 1033
Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/77 (66%), Positives = 60/77 (77%), Gaps = 5/77 (6%)
Query: 563 IFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMA 622
IFYK SL +PGE VG LAAQSIGEP+TQMTLNTFHFAG G NVTLG+PRL+E++ +
Sbjct: 1393 IFYK---SLCHPGECVGALAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINIV 1449
Query: 623 TKAIKTPSMEIPFLPDM 639
K +KTPS I +L DM
Sbjct: 1450 -KNVKTPSTTI-YLDDM 1464
Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 81/145 (55%), Gaps = 2/145 (1%)
Query: 863 KESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 922
+ S +L TDG N+ I + D K NDI + GIEA R +++E++ V +
Sbjct: 1910 RSSHWVLDTDGCNLENIFCAPQV-DFKKTVSNDIVEIFEVLGIEAVRRALLKELRTVISF 1968
Query: 923 YGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGRE 981
V+ RHLS++ D MT G +++ R+GI R++ + K +FE +E + +A+ +
Sbjct: 1969 DSSYVNYRHLSILCDVMTQKGYLMSITRHGINRVDKGPLIKCSFEETVEILLEAAAFAQV 2028
Query: 982 DSLRAPSARVMLGQECRQGTGLFQL 1006
D+LR + +MLGQ C+ GTG F +
Sbjct: 2029 DNLRGITENIMLGQLCKIGTGSFDI 2053
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
SH ++E LM V Q + P+ P+ G++QD +++ K + RD FLT+ E M+L+
Sbjct: 527 SHETRSEIKHLMIVQRQIVSPQGNKPVMGIVQDSLLAIRKFTRRDNFLTKEEVMSLLIW- 585
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVI 100
+ N I T P I KP LWTGKQ+ S ++
Sbjct: 586 IPYWNHVIPT--PAIIKPRALWTGKQIFSMLL 615
>sp|P11512|RPOA1_SULAC DNA-directed RNA polymerase subunit A' OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rpoA1 PE=3 SV=2
Length = 880
Score = 178 bits (451), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 136/422 (32%), Positives = 204/422 (48%), Gaps = 48/422 (11%)
Query: 14 AEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCILN 73
AEA LM V + P+ G P+ G QD++ LS++ T LT E V L + +
Sbjct: 474 AEARELMLVHKNIITPRYGGPIIGGGQDYISGAYLLSVKTTLLTVEE----VATILGVTD 529
Query: 74 TEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYGL 133
P I P P +TGKQV+S + PKD HG + K
Sbjct: 530 FVGELGEPAILAPKPYYTGKQVISLFL----PKDFNF--HG---PANISKGPRACKDEIC 580
Query: 134 VHAVWDTHVTIRHGELLSGILDKKQFGSTQ-YGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
H D+ + I++G LL G+ DKK G+ Q ++H +G E+ L+ + K+F
Sbjct: 581 PH---DSFIVIKNGLLLEGVFDKKAIGNQQPESMLHWSIREYGTEYGKWLMDNVFKMFIR 637
Query: 193 YLQRVGFTLGVRDILVRQE-RDRKRTKI------INKARRLGTEAACNALGLPLDTDPEI 245
+L+ GFT+ + DI + E ++ TKI +++ R E +P T E
Sbjct: 638 FLEMRGFTMTLEDITIPDEAQNEITTKIKEGYSQVDEYIRKFNEGQLEP--IPGRTIEES 695
Query: 246 ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGA 305
+ S + + + + +I +Y ++PF NN+ M +GA
Sbjct: 696 LESYILDTLDKLRKVAGEIATKY--------------------LDPF--NNVYIMAITGA 733
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
+GS +N Q++ LLGQ + G+R RTL F +++P A GFV FM G+ P
Sbjct: 734 RGSELNITQMTALLGQQSVRGERIRRGYRERTLSLFKYGDIAPEARGFVKNSFMRGLSPY 793
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
E FFH GREGL+DTAVKTS+SGY+QR L+ L L + YD TVR ++QV+YG+D
Sbjct: 794 EMFFHAAGGREGLVDTAVKTSQSGYMQRRLINALSDLRIEYDGTVRSLYGDIVQVVYGDD 853
Query: 426 GL 427
+
Sbjct: 854 AV 855
>sp|Q58445|RPOA1_METJA DNA-directed RNA polymerase subunit A' OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rpoA1 PE=3 SV=2
Length = 1341
Score = 169 bits (429), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 134/419 (31%), Positives = 205/419 (48%), Gaps = 52/419 (12%)
Query: 19 LMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCILNTEIRT 78
LM V L P+ G P+ G I D ISGA L L + T+ E A IL +
Sbjct: 941 LMLVEKHILSPRFGGPIIGAIHD-FISGAYL-LTSNYFTKDE-------ATLILRSG--G 989
Query: 79 LPPTIWKP------MPLWTGKQVLSTVI---INLTPKDKVIIRHGELLSGILDKKQFGST 129
+ +W+P +PL++GK++ S + +NL K K I R ++ KK+
Sbjct: 990 IKDELWEPDKVENGVPLYSGKKIFSKALPKGLNLRYKAK-ICRKCDVC-----KKE---- 1039
Query: 130 QYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKL 189
+D +V I+ GEL+ G++DK +G+ ++H + G E L K+
Sbjct: 1040 -----ECEYDAYVVIKDGELIKGVIDKNGYGAEAGLILHTIVKEFGPEAGRKFLDSATKM 1094
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
+ GFT G+ D + +E ++ K++++A E L+ P + +
Sbjct: 1095 AIRAVMLRGFTTGIDDEDLPEEALKEIEKVLDEAEEKVKEIIEKYERGELELLPGLNLEE 1154
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
+EAY S + R+ + DK I + L GL N+ M +GA+G+
Sbjct: 1155 SREAYIS------NVLREAR---DK-AGAIAERYL--GL-----DNHAVIMAVTGARGNI 1197
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N Q++ LGQ + GKR GR LP F ++ R+ GFV + G+ P EFFF
Sbjct: 1198 LNLTQMAACLGQQSVRGKRIFRGYRGRVLPHFEKGDLGARSHGFVRSSYKKGLSPTEFFF 1257
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
H M GREGL+D AV+T++SGY+QR L+ L+ L +D TVRDS +IQ YGEDG+D
Sbjct: 1258 HAMGGREGLVDQAVRTAQSGYMQRRLINALQDLKTEFDGTVRDSRGIMIQFKYGEDGID 1316
>sp|O27125|RPOA1_METTH DNA-directed RNA polymerase subunit A' OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpoA1 PE=3 SV=1
Length = 870
Score = 166 bits (421), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 131/428 (30%), Positives = 199/428 (46%), Gaps = 50/428 (11%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V L P+ G P+ G I DH ISGA L R + + E V+Q IL
Sbjct: 468 RAEAKTLMRVQEHILSPRFGGPIIGGIHDH-ISGAYLLTRKSAVFSEEK---VFQ---IL 520
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
LP + + WTGK++ S V+ P D ++ E+ + +
Sbjct: 521 KKAGLPLPDSRGRD---WTGKEIFSMVL----PDDLNMVYRAEVCRKCEECLEMECEN-- 571
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
D +V I +G+L+SG++D+K +G+ ++ + +G + A L KL
Sbjct: 572 ------DAYVVIENGQLISGVIDEKAYGAFAGKILDHIVKEYGTDAAREFLDSATKLAIA 625
Query: 193 YLQRVGFTLGVRDILVRQE-RDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQ 251
+ GFT D + +E R+R + N R+ QL
Sbjct: 626 GIMHAGFTTSTNDEEIPEEARERIEAHLRNAEARV---------------------DQLI 664
Query: 252 EAYASIPQFRAQIDRQYKSLLD-KVTNNINQVCLPEGLIEP----FPANNLQFMVESGAK 306
EAY + + R + L+ K+ + + G I N+ M +GA+
Sbjct: 665 EAYEN-GELEPLPGRSLEETLEMKIMQVLGEARDKSGEIAESYFDMDENHAVIMALTGAR 723
Query: 307 GSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQE 366
GS +N QI+ +GQ + G R + RTLP F E+ ++ GFV + G+ P E
Sbjct: 724 GSMLNLTQITACVGQQSVRGGRISRGYDNRTLPHFKKGELGAKSRGFVHSSYKEGLDPIE 783
Query: 367 FFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDG 426
FFFH M GREGL+DTA++T++SGY+QR LV L+ LTV + V D+ +IQ +GEDG
Sbjct: 784 FFFHAMGGREGLVDTAIRTAQSGYMQRRLVNALQDLTVDENGRVVDNRGVIIQNRFGEDG 843
Query: 427 LDVTKRQY 434
+D K Y
Sbjct: 844 VDPAKSDY 851
>sp|P0CX02|RPOA1_HALSA DNA-directed RNA polymerase subunit A' OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rpoA1 PE=3
SV=1
Length = 971
Score = 165 bits (418), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 133/419 (31%), Positives = 186/419 (44%), Gaps = 56/419 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V Q L P+ G + G IQDH ISG L D N + +
Sbjct: 544 RAEARVLMRVQEQILSPRFGENIIGAIQDH-ISGTYLLTNDN-----PRFNETQASDLLR 597
Query: 73 NTEIRTLPP---TIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGST 129
T I LP T WTG Q+ S ELL L + G+T
Sbjct: 598 QTRIDELPAAAGTDEDGDQYWTGHQIFS-----------------ELLPDDLSLEFTGTT 640
Query: 130 QYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKL 189
DT V I G+LL G + + G +V + HG A ++ +A L
Sbjct: 641 --------GDT-VVIEDGQLLEGTIADDEVGEYGSEIVDTITKVHGNTRARIFINEVASL 691
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
+ GF++G+ D V E + + I A D E+I +
Sbjct: 692 AMRSIMHFGFSIGIDDETVSTEARERIDEAIQSA---------------YDRVQELIETY 736
Query: 250 LQEAYASIP--QFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKG 307
S+P ++ + L K ++ V E E PA M SGA+G
Sbjct: 737 ENGDLESLPGRTVDETLEMKIMQTLGKARDSAGDVA-EENFDEDNPA---VVMANSGARG 792
Query: 308 STVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEF 367
S +N Q++ +GQ + G+R RTL F P ++S A GFV+ + +G+ P+EF
Sbjct: 793 SMLNLTQMAGCVGQQAVRGERINRGYEDRTLSHFAPNDLSSEAHGFVENSYTSGLTPKEF 852
Query: 368 FFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDG 426
FFH M GREGL+DTAV+TS+SGYLQR L+ L L YD TVRD+ +++Q +GEDG
Sbjct: 853 FFHAMGGREGLVDTAVRTSKSGYLQRRLINALSELETQYDGTVRDTSDTIVQFEFGEDG 911
>sp|B0R8D4|RPOA1_HALS3 DNA-directed RNA polymerase subunit A' OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rpoA1 PE=1 SV=1
Length = 971
Score = 165 bits (418), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 133/419 (31%), Positives = 186/419 (44%), Gaps = 56/419 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V Q L P+ G + G IQDH ISG L D N + +
Sbjct: 544 RAEARVLMRVQEQILSPRFGENIIGAIQDH-ISGTYLLTNDN-----PRFNETQASDLLR 597
Query: 73 NTEIRTLPP---TIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGST 129
T I LP T WTG Q+ S ELL L + G+T
Sbjct: 598 QTRIDELPAAAGTDEDGDQYWTGHQIFS-----------------ELLPDDLSLEFTGTT 640
Query: 130 QYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKL 189
DT V I G+LL G + + G +V + HG A ++ +A L
Sbjct: 641 --------GDT-VVIEDGQLLEGTIADDEVGEYGSEIVDTITKVHGNTRARIFINEVASL 691
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
+ GF++G+ D V E + + I A D E+I +
Sbjct: 692 AMRSIMHFGFSIGIDDETVSTEARERIDEAIQSA---------------YDRVQELIETY 736
Query: 250 LQEAYASIP--QFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKG 307
S+P ++ + L K ++ V E E PA M SGA+G
Sbjct: 737 ENGDLESLPGRTVDETLEMKIMQTLGKARDSAGDVA-EENFDEDNPA---VVMANSGARG 792
Query: 308 STVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEF 367
S +N Q++ +GQ + G+R RTL F P ++S A GFV+ + +G+ P+EF
Sbjct: 793 SMLNLTQMAGCVGQQAVRGERINRGYEDRTLSHFAPNDLSSEAHGFVENSYTSGLTPKEF 852
Query: 368 FFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDG 426
FFH M GREGL+DTAV+TS+SGYLQR L+ L L YD TVRD+ +++Q +GEDG
Sbjct: 853 FFHAMGGREGLVDTAVRTSKSGYLQRRLINALSELETQYDGTVRDTSDTIVQFEFGEDG 911
>sp|P41556|RPOA1_METVS DNA-directed RNA polymerase subunit A' OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rpoA1 PE=3 SV=1
Length = 889
Score = 155 bits (393), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 124/425 (29%), Positives = 195/425 (45%), Gaps = 40/425 (9%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + P+ G P+ G I D V SGA + F+ + E + L+ +
Sbjct: 483 RAEAETLMLVEKHIISPRYGGPIIGAIHDFV-SGAYVLTSSNFI-KDEALTLLKSSG--F 538
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVI---INLTPKDKVIIRHGELLSGILDKKQFGST 129
+E+ P + + ++GK + S + +NL K KV +
Sbjct: 539 GSELGE-PDFVENGIEYYSGKSLFSKTLPKGLNLQYKAKVCKK---------------CV 582
Query: 130 QYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKL 189
Q D V IR+G L+ G++DK FG+ +++ + G+E A + L K+
Sbjct: 583 QCKREECENDAFVIIRNGRLVQGVIDKNGFGAETGVVLNTIVKDFGSEDARTFLDSATKM 642
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
+ GFT G+ D + E ++ +++KA E G LD P +
Sbjct: 643 SVKSMMLRGFTTGIDDEDIPSEAIQEIQDLLDKAESDVQEIVERYEGGTLDPLPGRGIEE 702
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGST 309
+EAY I Q + + +K + N L M +GA+GS
Sbjct: 703 SREAY--IMQILGKARDDTGKVAEKYLSKENHAAL---------------MARTGARGSL 745
Query: 310 VNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFF 369
+N ++ +GQ + G R GRTLP F + ++ GFV + G+ P E+FF
Sbjct: 746 LNITMMAASVGQQSVRGGRVFRGYRGRTLPHFGEGSLDAKSHGFVRSCYKKGLAPTEYFF 805
Query: 370 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
H M GREGL+D AV+T++SGY+QR LV L+ + YD TVRDS ++Q YGED +D
Sbjct: 806 HAMGGREGLVDQAVRTAQSGYMQRRLVNALQDIKAEYDGTVRDSRGIIVQFNYGEDLVDP 865
Query: 430 TKRQY 434
+K +
Sbjct: 866 SKADH 870
>sp|Q03585|RPOA1_THEAC DNA-directed RNA polymerase subunit A' OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=rpoA1 PE=3 SV=1
Length = 885
Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 121/431 (28%), Positives = 196/431 (45%), Gaps = 57/431 (13%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA +M V Q + P+ G P+ G I DHV + L+ + T E ++++ L
Sbjct: 481 RAEARIIMKVQEQIMSPRFGGPIIGGIHDHVTALFLLTHNNPRYTHEEMVHIMAYLEPDL 540
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
E R I + G+ + ST++ PK + +L SG ++ +F
Sbjct: 541 LPEAR-----IENGEKYYYGRDIFSTIL----PKGLNVRFRSKLCSGSSERCEFEDDP-- 589
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
DT+V I G+++ G +D+ ++ ++ G++ A + + +L
Sbjct: 590 -----SDTYVEIVDGKMIHGTIDEAAVSPFSGAIIDKIFRKFGSQEAARFIDRMTRLAVG 644
Query: 193 YLQRVGFTLGVRDI------------LVRQERDRKRTKIINKARRLGTEAACNALGLPLD 240
++ GF+ G+ D LV Q DR K+I RR + A P
Sbjct: 645 FITYRGFSTGISDYDIPESAVARIEELVAQAEDRI-NKLIETFRRGELQPA------PGR 697
Query: 241 TDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFM 300
+ + + ++ + +I Y L KV + I M
Sbjct: 698 SVEDTLEMEILSEAGVVRDESGKIASSYLGL--KVPSVI--------------------M 735
Query: 301 VESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMT 360
SGA+ + +N +++ ++GQ + G R RTLP F ++ A GFV +MT
Sbjct: 736 ARSGARATMLNISEVAGIVGQQSVRGGRLNRGYYNRTLPHFKRGDIGADARGFVRSSYMT 795
Query: 361 GIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQV 420
G+ P E+FFH + GREGL+DTAV+TSRSGY+QR L+ E L V V+D+ SLIQ+
Sbjct: 796 GLSPTEYFFHSIGGREGLVDTAVRTSRSGYMQRRLINAFEDLKVDDSREVKDTVGSLIQI 855
Query: 421 LYGEDGLDVTK 431
YGEDG+D T+
Sbjct: 856 RYGEDGIDPTR 866
>sp|A5DCV3|RPB1_PICGU DNA-directed RNA polymerase II subunit RPB1 (Fragments)
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
/ DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=RPB1
PE=3 SV=2
Length = 1579
Score = 154 bits (389), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 80/162 (49%), Positives = 109/162 (67%), Gaps = 3/162 (1%)
Query: 273 DKVTNNINQVCLPEGLIEPF---PANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRP 329
D+V N + + +G+I P NN++ MV SG+KGS +N Q+S +GQ +EGKR
Sbjct: 548 DQVMNMLYWIPDWDGVIPPMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVEGKRI 607
Query: 330 AMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSG 389
+ R+LP F + SP + GFV+ ++ G+ PQEFFFH MAGREGLIDTAVKT+ +G
Sbjct: 608 PFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETG 667
Query: 390 YLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTK 431
Y+QR LVK LE + VHYD T R+S +IQ +YGEDG+D T+
Sbjct: 668 YIQRRLVKALEDIMVHYDGTTRNSLGDIIQFVYGEDGVDGTQ 709
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/98 (51%), Positives = 68/98 (69%), Gaps = 1/98 (1%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
SL +PGE VGV+AAQSIGEP+TQMTLNTFH+AG NVTLG+PRL+EIL +A K IKTP
Sbjct: 889 SLVHPGEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVA-KNIKTP 947
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKI 667
++ + D+ +KA + ++ T+ +V +I
Sbjct: 948 ALTVYLEKDIAADIEKAKVVQSAIEHTTLKNVTASTEI 985
Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 80/156 (51%), Gaps = 3/156 (1%)
Query: 853 LFLPSNLFEEKESKH-LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRV 911
L LP E K+ + +L+TDG+N+ + + D + Y N+ + S GIEA
Sbjct: 1123 LSLPDETGEFKQGQEWVLETDGVNLADVMAVPGV-DAKRTYSNNFIEILSVLGIEATRSA 1181
Query: 912 IIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLE 970
+ +E+ NV A G V+ RH++L+ D MT G +A+ R+GI R + + + +FE +E
Sbjct: 1182 LFKEILNVIAFDGSYVNYRHMALLVDVMTARGHLMAITRHGINRADTGALMRCSFEETVE 1241
Query: 971 KIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+ +A D S V+LGQ GTG F +
Sbjct: 1242 ILLEAGAAAELDDCHGISENVVLGQLAPLGTGAFDV 1277
Score = 41.2 bits (95), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVY 66
+AE S + V Q + P+ P+ G++QD + K++LRD F+ + MN++Y
Sbjct: 502 RAELSEICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDIFIEYDQVMNMLY 555
>sp|Q196X0|RPB1_IIV3 Probable DNA-directed RNA polymerase II subunit RPB1 homolog
OS=Invertebrate iridescent virus 3 GN=IIV3-090L PE=3 SV=1
Length = 1377
Score = 144 bits (363), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 123/385 (31%), Positives = 188/385 (48%), Gaps = 65/385 (16%)
Query: 295 NNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFV 354
NN ESG+KGS N QI+ LLGQ ++GKR ++ P + + GF+
Sbjct: 758 NNFCVTTESGSKGSIFNICQITSLLGQQTIDGKRVYGLLH--------PQDNEFQDRGFI 809
Query: 355 DGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSD 414
F+ G+ P+EF H MAGR+G+IDTA+ TS SGY QR VK E + ++ D TVRD +
Sbjct: 810 ANSFVEGLSPREFLHHAMAGRKGVIDTALLTSVSGYGQRQGVKLNEDIKIYPDYTVRDVN 869
Query: 415 LSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLT 474
L Q ++GE G D ++ + + D + IC+ ++N L + S AL
Sbjct: 870 GRLYQYIFGEAGYDPSQ---------TIVVDGHQTICNVYRLVNRLNRSYDSSAL----- 915
Query: 475 FKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPL---ISTFQPDAH 531
+P + ++ +D ++ R++++ P + I + + D
Sbjct: 916 -----RP---LTEDEIEWMVDFIQP------------RREYEYIPPDVEQRICSIRRDPI 955
Query: 532 FGSISE-NLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPS 590
G + D++V K SH++K FY+ L+S PGE VG++ AQS+GE S
Sbjct: 956 VGQLRRIQTVDALVPILK-----SHLEK----CFYQTLMS---PGECVGIIGAQSMGEFS 1003
Query: 591 TQMTLNTFHFAGRGDMN-VTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRL 649
TQ TLNTFH AG VT + R +EI ATK K + ++ F +E + R
Sbjct: 1004 TQATLNTFHVAGSTTTGAVTNCLTRFQEI-NNATKNPKNITCKVYFTKGNGTIE-EIRRR 1061
Query: 650 AKSMTRITMADVLEKVKIK----EW 670
K + I DV+EK ++ EW
Sbjct: 1062 GKDVKHIVFRDVVEKWTVEPATAEW 1086
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D+ N+I + T GIEAA I+E + + G VD H+ L AD +T +GT
Sbjct: 1212 IDVEHTTTNNIWDIYHTLGIEAAREFRIKE---LVEIIGTGVDLSHIKLRADRLTFTGTI 1268
Query: 946 VAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQ 1005
++ R +R F K+ FE +E + + D L SA +M G+ + GT +F
Sbjct: 1269 QSLTRYTMRGEKPF-SKVGFEEIMENFYKTARDAEVDDLTGVSASIMCGKRAKVGTSMFD 1327
Query: 1006 LR 1007
++
Sbjct: 1328 IK 1329
>sp|P15349|RPOA1_HALMO DNA-directed RNA polymerase subunit A' (Fragment) OS=Halococcus
morrhuae GN=rpoA1 PE=3 SV=1
Length = 349
Score = 141 bits (355), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 97/297 (32%), Positives = 147/297 (49%), Gaps = 26/297 (8%)
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ DT V I G L+ G +D+ G+ +V + +G A ++ +A L
Sbjct: 2 FTSSTGDT-VMIDEGALVEGTIDEDAVGAFGGEIVDTIVKQYGETRARVFINEVASLAMR 60
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
+ GF++G+ D I + A E+ NA + E+I + +
Sbjct: 61 AIMHFGFSIGIDD-----------ESISDAAEAQIDESMDNAY----ERVQELIDTYEND 105
Query: 253 AYASIPQFRAQIDRQYKSLLD-KVTNNINQVCLPEGLI--EPFPANN-LQFMVESGAKGS 308
S+P R L+ K+ + + G I E F +N M ESGA+GS
Sbjct: 106 DLESLPG------RTVDETLEMKIMQTLGKARDSAGDIADEHFDDDNPAVIMAESGARGS 159
Query: 309 TVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFF 368
+N Q++ +GQ + G+R GRTL F P ++S A GFV+ + +G+ P+EFF
Sbjct: 160 MLNLTQMAACVGQQAVRGERINRGYEGRTLSHFKPGDLSAEAHGFVEDSYRSGLTPREFF 219
Query: 369 FHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
FH M GREGL+DTAV+TS+SGYLQR L+ L L YD TVRD+ +++Q +GED
Sbjct: 220 FHAMGGREGLVDTAVRTSKSGYLQRRLINALSELETQYDGTVRDTSDNIVQFEFGED 276
>sp|P42486|RPB1_ASFB7 Probable DNA-directed RNA polymerase subunit 1 homolog OS=African
swine fever virus (strain Badajoz 1971 Vero-adapted)
GN=Ba71V-99 PE=3 SV=1
Length = 1450
Score = 141 bits (355), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 138/460 (30%), Positives = 215/460 (46%), Gaps = 70/460 (15%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+ EA L +V + ++ K P++G +QD + L+ +T + + MN ++ A+ +
Sbjct: 474 RVEAELLCSVRNWFISTKSSGPVNGQVQDSTVGSFLLTRTNTPMGK-NVMNKLH-AMGLF 531
Query: 73 NTEIRTLPPTI--WKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
T +T PP + P L GK V+S +++ TP + Q T
Sbjct: 532 QTT-QTDPPCFANYSPTDLLDGKSVVS-MLLKQTPINY----------------QRAPTW 573
Query: 131 YGLVHAVW------DTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLL 183
Y V+A + D IR+GEL+ G+LDKK G+ + G+ H + +G + A+ ++
Sbjct: 574 YSEVYAPYMHYNKQDISTQIRNGELIEGVLDKKAVGAGSSGGIYHLISRRYGPQQALKMI 633
Query: 184 SCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDP 243
+L Y++ GFT+ D+L+ E ++ +IINK L +E N L L D P
Sbjct: 634 FATQQLALNYVRNAGFTVSTADMLLTPEAHQEVQEIINKLL-LESEEINNRL-LHGDIMP 691
Query: 244 EI------ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNL 297
I +LQ P DR +L + N+IN PE N L
Sbjct: 692 PIGLTTHDFYEKLQLNALKFP------DR----ILKPIMNSIN----PE-------TNGL 730
Query: 298 QFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVS-GRTLPSFLPYEVSPRAGGFVDG 356
MV +GAKGS N + I +GQIE+ +R S GRTL + + + +A GF+
Sbjct: 731 FQMVATGAKGSNPNMIHIMAGIGQIEINTQRIQPQFSFGRTLVYYPRFALEAQAYGFICN 790
Query: 357 RFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLS 416
++ G+ EF F M GR LI+ A+ TS +GY R + L+ V Y V D
Sbjct: 791 SYIAGLTSPEFIFGEMNGRFDLINKALSTSSTGYANRKAIFGLQSCIVDYYRRV-SIDTR 849
Query: 417 LIQVLYGEDGLDVTKRQ-------YLTDKQFSFLEDNIKW 449
L+Q LYGEDGLD + + L+D++ LED K+
Sbjct: 850 LVQQLYGEDGLDARQLETVRFETIMLSDQE---LEDKFKY 886
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 67/137 (48%), Gaps = 5/137 (3%)
Query: 867 HLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIE 926
+ +KT+G N+ F + +D + + I YGIEAA + II E++ V G
Sbjct: 1291 YAIKTNGTNI-FGAMLDDNIDPYTIVSSSIGDTMELYGIEAARQKIISEIRTVMGDKG-- 1347
Query: 927 VDPRHLSLVADYMTHSGTYVAMNRNGI--RLNPSFIQKMTFEMPLEKIRQASMQGREDSL 984
+ RHL + AD MT +G ++ + G+ R + + +M P++ + A++ + +
Sbjct: 1348 PNHRHLLMYADLMTRTGQVTSLEKAGLNAREPSNVLLRMALSSPVQVLTDAAVDSAVNPI 1407
Query: 985 RAPSARVMLGQECRQGT 1001
+A ++G R GT
Sbjct: 1408 YGIAAPTLMGSVPRIGT 1424
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 561 DMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREIL 619
D+I + SL N GE VG+LAAQS+ EP TQ L++ H + G N + GI R +EI
Sbjct: 1024 DLIRLQYTQSLINYGEAVGILAAQSVSEPLTQYMLDSHHRSVAGGTNKS-GIVRPQEIF 1081
>sp|Q65215|RPB1_ASFM2 Probable DNA-directed RNA polymerase subunit 1 homolog OS=African
swine fever virus (isolate Tick/Malawi/Lil 20-1/1983)
GN=Mal-107 PE=3 SV=2
Length = 1450
Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 137/460 (29%), Positives = 215/460 (46%), Gaps = 70/460 (15%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+ EA L +V + ++ K P++G +QD + L+ +T + + MN ++ A+ +
Sbjct: 474 RVEAELLCSVRNWFISTKSSGPVNGQVQDSTVGSFLLTRTNTPMGK-NVMNKLH-AMGLF 531
Query: 73 NTEIRTLPPTI--WKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
T +T PP + P L GK V+S +++ TP + Q T
Sbjct: 532 QTT-QTDPPCFANYSPTDLLDGKSVVS-MLLKQTPINY----------------QRAPTW 573
Query: 131 YGLVHAVW------DTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLL 183
Y V+A + D IR+GEL+ G+LDKK G+ + G+ H + +G + A+ ++
Sbjct: 574 YSEVYAPYMHYNKQDISTQIRNGELIEGVLDKKAVGAGSSGGIYHLISRRYGPQQALKMI 633
Query: 184 SCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDP 243
+L Y++ GFT+ D+L+ E ++ +IIN+ L +E N L L D P
Sbjct: 634 FATQQLALNYVRNAGFTVSTADMLLTPEAHQEVQEIINELL-LESEEINNRL-LHGDIMP 691
Query: 244 EI------ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNL 297
I +LQ P DR +L + N+IN PE N L
Sbjct: 692 PIGLTTHDFYEKLQLNALKFP------DR----ILKPIMNSIN----PE-------TNGL 730
Query: 298 QFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVS-GRTLPSFLPYEVSPRAGGFVDG 356
MV +GAKGS N + I +GQIE+ +R S GRTL + + + +A GF+
Sbjct: 731 FQMVATGAKGSNPNMIHIMAGIGQIEINTQRIQPQFSFGRTLVYYPRFALEAQAYGFICN 790
Query: 357 RFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLS 416
++ G+ EF F M GR LI+ A+ TS +GY R + L+ V Y V D
Sbjct: 791 SYIAGLTSPEFIFGEMNGRFDLINKALSTSSTGYANRKAIFGLQSCIVDYYRRV-SIDTR 849
Query: 417 LIQVLYGEDGLDVTKRQ-------YLTDKQFSFLEDNIKW 449
L+Q LYGEDGLD + + L+D++ LED K+
Sbjct: 850 LVQQLYGEDGLDARQLETVRFETIMLSDQE---LEDKFKY 886
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 67/137 (48%), Gaps = 5/137 (3%)
Query: 867 HLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIE 926
+ +KT+G N+ F + +D + + I YGIEAA + II E++ V G
Sbjct: 1291 YAIKTNGTNI-FGAMLDDNIDPYTIVSSSIGDTMELYGIEAARQKIISEIRTVMGDKG-- 1347
Query: 927 VDPRHLSLVADYMTHSGTYVAMNRNGI--RLNPSFIQKMTFEMPLEKIRQASMQGREDSL 984
+ RHL + AD MT +G ++ + G+ R + + +M P++ + A++ + +
Sbjct: 1348 PNHRHLLMYADLMTRTGQVTSLEKAGLNAREPSNVLLRMALSSPVQVLTDAAVDSAVNPI 1407
Query: 985 RAPSARVMLGQECRQGT 1001
+A ++G R GT
Sbjct: 1408 YGIAAPTLMGSVPRIGT 1424
>sp|P0C988|RPB1_ASFWA Probable DNA-directed RNA polymerase subunit 1 homolog OS=African
swine fever virus (isolate Warthog/Namibia/Wart80/1980)
GN=War-109 PE=3 SV=1
Length = 1450
Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 137/460 (29%), Positives = 215/460 (46%), Gaps = 70/460 (15%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+ EA L +V + ++ K P++G +QD + L+ +T + + MN ++ A+ +
Sbjct: 474 RVEAELLCSVRNWFISTKSSGPVNGQVQDSTVGSFLLTRTNTPMGK-NVMNKLH-AMGLF 531
Query: 73 NTEIRTLPPTI--WKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
T +T PP + P L GK V+S +++ TP + Q T
Sbjct: 532 QTT-QTDPPCFANYSPTDLLDGKSVVS-MLLRQTPINY----------------QRAPTW 573
Query: 131 YGLVHAVW------DTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLL 183
Y V+A + D IR+GEL+ G+LDKK G+ + G+ H + +G + A+ ++
Sbjct: 574 YSEVYAPYMHYNKQDISTQIRNGELIEGVLDKKAVGAGSSGGIYHLISRRYGPQQALKMI 633
Query: 184 SCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDP 243
+L Y++ GFT+ D+L+ E ++ +IIN+ L +E N L L D P
Sbjct: 634 FATQQLALNYVRNAGFTVSTADMLLTPEAHQEVQEIINELL-LESEEINNRL-LHGDIMP 691
Query: 244 EI------ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNL 297
I +LQ P DR +L + N+IN PE N L
Sbjct: 692 PIGLTTHDFYEKLQLNALKFP------DR----ILKPIMNSIN----PE-------TNGL 730
Query: 298 QFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVS-GRTLPSFLPYEVSPRAGGFVDG 356
MV +GAKGS N + I +GQIE+ +R S GRTL + + + +A GF+
Sbjct: 731 FQMVATGAKGSNPNMIHIMAGIGQIEINTQRIQPQFSFGRTLVYYPRFALEAQAYGFICN 790
Query: 357 RFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLS 416
++ G+ EF F M GR LI+ A+ TS +GY R + L+ V Y V D
Sbjct: 791 SYIAGLTSPEFIFGEMNGRFDLINKALSTSSTGYANRKAIFGLQSCIVDYYRRV-SIDTR 849
Query: 417 LIQVLYGEDGLDVTKRQ-------YLTDKQFSFLEDNIKW 449
L+Q LYGEDGLD + + L+D++ LED K+
Sbjct: 850 LVQQLYGEDGLDARQLETVRFETIMLSDQE---LEDKFKY 886
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 67/137 (48%), Gaps = 5/137 (3%)
Query: 867 HLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIE 926
+ +KT+G N+ F + +D + + I YGIEAA + II E++ V G
Sbjct: 1291 YAIKTNGTNI-FGAMLDDNIDPYTIVSSSIGDTMELYGIEAARQKIISEIRTVMGDKG-- 1347
Query: 927 VDPRHLSLVADYMTHSGTYVAMNRNGI--RLNPSFIQKMTFEMPLEKIRQASMQGREDSL 984
+ RHL + AD MT +G ++ + G+ R + + +M P++ + A++ + +
Sbjct: 1348 PNHRHLLMYADLMTRTGQVTSLEKAGLNAREPSNVLLRMALSSPVQVLTDAAVDSAVNPI 1407
Query: 985 RAPSARVMLGQECRQGT 1001
+A ++G R GT
Sbjct: 1408 YGIAAPTLMGSVPRIGT 1424
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 561 DMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREIL 619
D+I + SL N GE VG+LAAQS+ EP TQ L++ H + G N + GI R +EI
Sbjct: 1024 DLIRLQYTQSLINYGEAVGILAAQSVSEPLTQYMLDSHHRSVAGGTNKS-GIVRPQEIF 1081
>sp|P0C987|RPB1_ASFP4 Probable DNA-directed RNA polymerase subunit 1 homolog OS=African
swine fever virus (isolate Tick/South
Africa/Pretoriuskop Pr4/1996) GN=Pret-111 PE=3 SV=1
Length = 1450
Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 137/460 (29%), Positives = 215/460 (46%), Gaps = 70/460 (15%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+ EA L +V + ++ K P++G +QD + L+ +T + + MN ++ A+ +
Sbjct: 474 RVEAELLCSVRNWFISTKSSGPVNGQVQDSTVGSFLLTRTNTPMGK-NVMNKLH-AMGLF 531
Query: 73 NTEIRTLPPTI--WKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
T +T PP + P L GK V+S +++ TP + Q T
Sbjct: 532 QTT-QTDPPCFANYSPTDLLDGKSVVS-MLLRQTPINY----------------QRAPTW 573
Query: 131 YGLVHAVW------DTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLL 183
Y V+A + D IR+GEL+ G+LDKK G+ + G+ H + +G + A+ ++
Sbjct: 574 YSEVYAPYMHYNKQDISTQIRNGELIEGVLDKKAVGAGSSGGIYHLISRRYGPQQALKMI 633
Query: 184 SCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDP 243
+L Y++ GFT+ D+L+ E ++ +IIN+ L +E N L L D P
Sbjct: 634 FATQQLALNYVRNAGFTVSTADMLLTPEAHQEVQEIINELL-LESEEINNRL-LHGDIMP 691
Query: 244 EI------ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNL 297
I +LQ P DR +L + N+IN PE N L
Sbjct: 692 PIGLTTHDFYEKLQLNALKFP------DR----ILKPIMNSIN----PE-------TNGL 730
Query: 298 QFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVS-GRTLPSFLPYEVSPRAGGFVDG 356
MV +GAKGS N + I +GQIE+ +R S GRTL + + + +A GF+
Sbjct: 731 FQMVATGAKGSNPNMIHIMAGIGQIEINTQRIQPQFSFGRTLVYYPRFALEAQAYGFICN 790
Query: 357 RFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLS 416
++ G+ EF F M GR LI+ A+ TS +GY R + L+ V Y V D
Sbjct: 791 SYIAGLTSPEFIFGEMNGRFDLINKALSTSSTGYANRKAIFGLQSCIVDYYRRV-SIDTR 849
Query: 417 LIQVLYGEDGLDVTKRQ-------YLTDKQFSFLEDNIKW 449
L+Q LYGEDGLD + + L+D++ LED K+
Sbjct: 850 LVQQLYGEDGLDARQLETVRFETIMLSDQE---LEDKFKY 886
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 67/137 (48%), Gaps = 5/137 (3%)
Query: 867 HLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIE 926
+ +KT+G N+ F + +D + + I YGIEAA + II E++ V G
Sbjct: 1291 YAIKTNGTNI-FGAMLDDNIDPYTIVSSSIGDTMELYGIEAARQKIISEIRTVMGDKG-- 1347
Query: 927 VDPRHLSLVADYMTHSGTYVAMNRNGI--RLNPSFIQKMTFEMPLEKIRQASMQGREDSL 984
+ RHL + AD MT +G ++ + G+ R + + +M P++ + A++ + +
Sbjct: 1348 PNHRHLLMYADLMTRTGQVTSLEKAGLNAREPSNVLLRMALSSPVQVLTDAAVDSAVNPI 1407
Query: 985 RAPSARVMLGQECRQGT 1001
+A ++G R GT
Sbjct: 1408 YGIAAPTLMGSVPRIGT 1424
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 561 DMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREIL 619
D+I + SL N GE VG+LAAQS+ EP TQ L++ H + G N + GI R +EI
Sbjct: 1024 DLIRLQYTQSLINYGEAVGILAAQSVSEPLTQYMLDSHHRSVAGGTNKS-GIVRPQEIF 1081
>sp|P0C989|RPB1_ASFK5 Probable DNA-directed RNA polymerase subunit 1 homolog OS=African
swine fever virus (isolate Pig/Kenya/KEN-50/1950)
GN=Ken-111 PE=3 SV=1
Length = 1450
Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 137/460 (29%), Positives = 215/460 (46%), Gaps = 70/460 (15%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+ EA L +V + ++ K P++G +QD + L+ +T + + MN ++ A+ +
Sbjct: 474 RVEAELLCSVRNWFISTKSSGPVNGQVQDSTVGSFLLTRTNTPMGK-NVMNKLH-AMGLF 531
Query: 73 NTEIRTLPPTI--WKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
T +T PP + P L GK V+S +++ TP + Q T
Sbjct: 532 QTT-QTDPPCFANYSPTDLLDGKLVVS-MLLKQTPINY----------------QRAPTW 573
Query: 131 YGLVHAVW------DTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLL 183
Y V+A + D IR+GEL+ G+LDKK G+ + G+ H + +G + A+ ++
Sbjct: 574 YSEVYAPYMHYNKQDISTQIRNGELIEGVLDKKAVGAGSSGGIYHLISRRYGPQQALKMI 633
Query: 184 SCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDP 243
+L Y++ GFT+ D+L+ E ++ +IIN+ L +E N L L D P
Sbjct: 634 FATQQLALNYVRNAGFTVSTADMLLTPEAHQEVQEIINELL-LESEEINNRL-LHGDIMP 691
Query: 244 EI------ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNL 297
I +LQ P DR +L + N+IN PE N L
Sbjct: 692 PIGLTTHDFYEKLQLNALKFP------DR----ILKPIMNSIN----PE-------TNGL 730
Query: 298 QFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVS-GRTLPSFLPYEVSPRAGGFVDG 356
MV +GAKGS N + I +GQIE+ +R S GRTL + + + +A GF+
Sbjct: 731 FQMVATGAKGSNPNMIHIMAGIGQIEINTQRIQPQFSFGRTLVYYPRFALEAQAYGFICN 790
Query: 357 RFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLS 416
++ G+ EF F M GR LI+ A+ TS +GY R + L+ V Y V D
Sbjct: 791 SYIAGLTSPEFIFGEMNGRFDLINKALSTSSTGYANRKAIFGLQSCIVDYYRRV-SIDTR 849
Query: 417 LIQVLYGEDGLDVTKRQ-------YLTDKQFSFLEDNIKW 449
L+Q LYGEDGLD + + L+D++ LED K+
Sbjct: 850 LVQQLYGEDGLDARQLETVRFETIMLSDQE---LEDKFKY 886
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 67/137 (48%), Gaps = 5/137 (3%)
Query: 867 HLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIE 926
+ +KT+G N+ F + +D + + I YGIEAA + II E++ V G
Sbjct: 1291 YAIKTNGTNI-FGAMLDDNIDPYTIVSSSIGDTMELYGIEAARQKIISEIRTVMGDKG-- 1347
Query: 927 VDPRHLSLVADYMTHSGTYVAMNRNGI--RLNPSFIQKMTFEMPLEKIRQASMQGREDSL 984
+ RHL + AD MT +G ++ + G+ R + + +M P++ + A++ + +
Sbjct: 1348 PNHRHLLMYADLMTRTGQVTSLEKAGLNAREPSNVLLRMALSSPVQVLTDAAIDSAVNPI 1407
Query: 985 RAPSARVMLGQECRQGT 1001
+A ++G R GT
Sbjct: 1408 YGIAAPTLMGSVPRIGT 1424
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 561 DMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREIL 619
D+I + SL N GE VG+LAAQS+ EP TQ L++ H + G N + GI R +EI
Sbjct: 1024 DLIRLQYTQSLINYGEAVGILAAQSVSEPLTQYMLDSHHRSVAGGTNKS-GIVRPQEIF 1081
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 376,414,347
Number of Sequences: 539616
Number of extensions: 16549165
Number of successful extensions: 86860
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1220
Number of HSP's successfully gapped in prelim test: 625
Number of HSP's that attempted gapping in prelim test: 66594
Number of HSP's gapped (non-prelim): 11500
length of query: 1020
length of database: 191,569,459
effective HSP length: 128
effective length of query: 892
effective length of database: 122,498,611
effective search space: 109268761012
effective search space used: 109268761012
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)