Your job contains 1 sequence.
>psy16767
MDGWTQNASHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAE
YMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGI
LDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAI
SLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLD
TDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFM
VESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMT
GIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQV
LYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGK
PNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLA
DSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHF
AGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMAD
VLEKVKIKEWLEISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAI
AKRAAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHK
KVNQEEDNDFEEPEDEERMSEREEDDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKY
SYDKKNHMWCKLLFLPSNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMA
STYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFI
QKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNREKKKKKVEAKG
The BLAST search returned 8 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy16767
(1020 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0019938 - symbol:RpI1 "RNA polymerase I subunit" s... 1272 3.4e-220 3
UNIPROTKB|O95602 - symbol:POLR1A "DNA-directed RNA polyme... 1190 2.3e-213 4
UNIPROTKB|F1SVC3 - symbol:POLR1A "DNA-directed RNA polyme... 1202 9.4e-213 4
MGI|MGI:1096397 - symbol:Polr1a "polymerase (RNA) I polyp... 1191 9.5e-212 4
UNIPROTKB|J9P5G4 - symbol:POLR1A "DNA-directed RNA polyme... 1198 1.1e-211 4
UNIPROTKB|E2R0G4 - symbol:POLR1A "DNA-directed RNA polyme... 1198 3.1e-211 4
UNIPROTKB|E1BIX2 - symbol:POLR1A "DNA-directed RNA polyme... 1183 3.8e-211 4
UNIPROTKB|B9ZVN9 - symbol:POLR1A "DNA-directed RNA polyme... 1190 6.2e-211 3
UNIPROTKB|G3V7B7 - symbol:Polr1a "DNA-directed RNA polyme... 1185 1.4e-210 4
RGD|620824 - symbol:Polr1a "polymerase (RNA) I polypeptid... 1179 7.9e-210 4
ZFIN|ZDB-GENE-030131-5286 - symbol:polr1a "polymerase (RN... 1164 1.6e-201 3
WB|WBGene00012999 - symbol:rpoa-1 species:6239 "Caenorhab... 1072 2.1e-178 4
UNIPROTKB|F1NJE0 - symbol:POLR1A "DNA-directed RNA polyme... 763 6.2e-177 4
POMBASE|SPBC4C3.05c - symbol:nuc1 "DNA-directed RNA polym... 1045 6.3e-167 3
SGD|S000005868 - symbol:RPA190 "RNA polymerase I largest ... 981 5.8e-163 4
CGD|CAL0001661 - symbol:RPA190 species:5476 "Candida albi... 915 4.4e-155 4
DICTYBASE|DDB_G0275759 - symbol:rpa1 "RNA polymerase I, l... 947 4.0e-154 3
TAIR|locus:2076661 - symbol:NRPA1 "nuclear RNA polymerase... 747 4.9e-142 4
UNIPROTKB|G4NBX7 - symbol:MGG_01158 "DNA-directed RNA pol... 889 1.3e-141 4
UNIPROTKB|H9L2Z0 - symbol:H9L2Z0 "DNA-directed RNA polyme... 662 2.8e-124 4
UNIPROTKB|E1C4T2 - symbol:POLR1A "Uncharacterized protein... 526 4.1e-118 4
UNIPROTKB|H9L2Z3 - symbol:H9L2Z3 "DNA-directed RNA polyme... 1069 3.3e-117 2
UNIPROTKB|H9L2Z2 - symbol:H9L2Z2 "DNA-directed RNA polyme... 1003 3.4e-109 2
UNIPROTKB|H9L2Z1 - symbol:H9L2Z1 "DNA-directed RNA polyme... 843 7.0e-92 2
UNIPROTKB|F1LQN7 - symbol:Polr1a "DNA-directed RNA polyme... 844 2.7e-84 1
POMBASE|SPBC28F2.12 - symbol:rpb1 "RNA polymerase II larg... 362 6.9e-81 4
CGD|CAL0000919 - symbol:RPO21 species:5476 "Candida albic... 371 2.0e-79 4
UNIPROTKB|Q5ACI7 - symbol:RPO21 "DNA-directed RNA polymer... 371 2.0e-79 4
SGD|S000002299 - symbol:RPO21 "RNA polymerase II largest ... 370 8.8e-79 4
WB|WBGene00000123 - symbol:ama-1 species:6239 "Caenorhabd... 356 4.2e-78 4
UNIPROTKB|P16356 - symbol:ama-1 "DNA-directed RNA polymer... 356 4.2e-78 4
UNIPROTKB|A4IF62 - symbol:POLR3A "DNA-directed RNA polyme... 324 7.6e-78 4
ASPGD|ASPL0000054301 - symbol:AN0809 species:162425 "Emer... 355 1.0e-77 4
UNIPROTKB|J9P629 - symbol:POLR3A "DNA-directed RNA polyme... 324 1.2e-77 4
UNIPROTKB|O14802 - symbol:POLR3A "DNA-directed RNA polyme... 324 1.6e-77 4
UNIPROTKB|F1S2E6 - symbol:POLR3A "DNA-directed RNA polyme... 324 4.1e-77 4
UNIPROTKB|Q5ZL98 - symbol:POLR3A "DNA-directed RNA polyme... 323 4.2e-77 4
UNIPROTKB|F1NIK7 - symbol:POLR3A "DNA-directed RNA polyme... 323 6.8e-77 4
FB|FBgn0003277 - symbol:RpII215 "RNA polymerase II 215kD ... 352 2.9e-76 4
UNIPROTKB|J9NW09 - symbol:POLR2A "DNA-directed RNA polyme... 356 5.4e-76 4
DICTYBASE|DDB_G0279193 - symbol:rpb1 "RNA polymerase II c... 358 6.9e-76 4
UNIPROTKB|F1PGS0 - symbol:POLR2A "DNA-directed RNA polyme... 356 9.0e-76 4
RGD|1587326 - symbol:Polr2a "polymerase (RNA) II (DNA dir... 356 9.0e-76 4
UNIPROTKB|P24928 - symbol:POLR2A "DNA-directed RNA polyme... 356 9.0e-76 4
MGI|MGI:98086 - symbol:Polr2a "polymerase (RNA) II (DNA d... 356 9.0e-76 4
UNIPROTKB|G3MZY8 - symbol:POLR2A "DNA-directed RNA polyme... 356 1.5e-75 4
WB|WBGene00004411 - symbol:rpc-1 species:6239 "Caenorhabd... 311 2.0e-75 4
ZFIN|ZDB-GENE-041008-78 - symbol:polr2a "polymerase (RNA)... 350 3.2e-75 4
GENEDB_PFALCIPARUM|PF13_0150 - symbol:PF13_0150 "DNA-dire... 325 3.0e-74 4
UNIPROTKB|Q8IE49 - symbol:PF13_0150 "DNA-directed RNA pol... 325 3.0e-74 4
CGD|CAL0002215 - symbol:orf19.3103 species:5476 "Candida ... 315 3.1e-74 4
ZFIN|ZDB-GENE-050208-103 - symbol:polr3a "polymerase (RNA... 325 4.3e-74 4
UNIPROTKB|G4MT89 - symbol:MGG_04652 "DNA-directed RNA pol... 357 7.5e-74 4
UNIPROTKB|E9PTB6 - symbol:Polr3a "DNA-directed RNA polyme... 324 2.4e-73 4
FB|FBgn0030687 - symbol:CG17209 species:7227 "Drosophila ... 342 1.5e-72 4
SGD|S000005642 - symbol:RPO31 "RNA polymerase III largest... 312 4.6e-71 4
POMBASE|SPBC651.08c - symbol:rpc1 "DNA-directed RNA polym... 339 3.3e-70 4
ASPGD|ASPL0000047704 - symbol:AN10316 species:162425 "Eme... 313 5.1e-65 5
UNIPROTKB|E2QXD8 - symbol:POLR3A "DNA-directed RNA polyme... 324 1.2e-64 5
DICTYBASE|DDB_G0277199 - symbol:rpc1 "RNA polymerase III,... 352 4.4e-55 3
UNIPROTKB|I3LJR4 - symbol:POLR2A "DNA-directed RNA polyme... 356 3.8e-45 2
RGD|1305574 - symbol:Polr3a "polymerase (RNA) III (DNA di... 213 6.9e-27 3
TIGR_CMR|CHY_2317 - symbol:CHY_2317 "DNA-directed RNA pol... 138 1.3e-17 5
TIGR_CMR|BA_0103 - symbol:BA_0103 "DNA-directed RNA polym... 137 3.3e-16 6
UNIPROTKB|P37871 - symbol:rpoC "DNA-directed RNA polymera... 135 6.1e-15 6
UNIPROTKB|P0A8T7 - symbol:rpoC "RNA polymerase, beta' sub... 113 7.8e-15 6
TIGR_CMR|CBU_0232 - symbol:CBU_0232 "DNA-directed RNA pol... 112 3.9e-14 6
UNIPROTKB|Q9KV29 - symbol:rpoC "DNA-directed RNA polymera... 117 1.7e-12 7
TIGR_CMR|VC_0329 - symbol:VC_0329 "DNA-directed RNA polym... 117 1.7e-12 7
UNIPROTKB|P0A674 - symbol:rpoC "DNA-directed RNA polymera... 139 1.2e-11 6
TAIR|locus:2015163 - symbol:NRPD1A "nuclear RNA polymeras... 120 8.5e-11 3
TIGR_CMR|CPS_4768 - symbol:CPS_4768 "DNA-directed RNA pol... 112 3.7e-10 5
TIGR_CMR|SO_0225 - symbol:SO_0225 "DNA-directed RNA polym... 111 4.6e-10 5
TIGR_CMR|APH_1023 - symbol:APH_1023 "DNA-directed RNA pol... 108 4.7e-10 6
TIGR_CMR|CJE_0529 - symbol:CJE_0529 "DNA-directed RNA pol... 115 6.2e-10 5
TIGR_CMR|SPO_3507 - symbol:SPO_3507 "DNA-directed RNA pol... 115 6.7e-10 5
TIGR_CMR|ECH_0951 - symbol:ECH_0951 "DNA-directed RNA pol... 106 2.7e-09 5
TIGR_CMR|DET_0604 - symbol:DET_0604 "DNA-directed RNA pol... 129 3.7e-09 4
TIGR_CMR|NSE_0677 - symbol:NSE_0677 "DNA-directed RNA pol... 107 1.0e-08 3
UNIPROTKB|P0C507 - symbol:rpoC2 "DNA-directed RNA polymer... 105 2.6e-07 4
UNIPROTKB|P0C508 - symbol:rpoC2 "DNA-directed RNA polymer... 105 2.6e-07 4
UNIPROTKB|P0C509 - symbol:rpoC2 "DNA-directed RNA polymer... 105 2.6e-07 4
UNIPROTKB|Q6ENI2 - symbol:rpoC2 "DNA-directed RNA polymer... 105 2.6e-07 4
>FB|FBgn0019938 [details] [associations]
symbol:RpI1 "RNA polymerase I subunit" species:7227
"Drosophila melanogaster" [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=ISS;NAS] [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=ISS] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 EMBL:AE013599 GO:GO:0005730 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K02999
PANTHER:PTHR19376:SF11 EMBL:Y09103 EMBL:AY121632 PIR:T13803
RefSeq:NP_523743.1 UniGene:Dm.8031 ProteinModelPortal:P91875
SMR:P91875 MINT:MINT-1742038 STRING:P91875 PaxDb:P91875
GeneID:36617 KEGG:dme:Dmel_CG10122 CTD:36617 FlyBase:FBgn0019938
InParanoid:P91875 OrthoDB:EOG466T1R GenomeRNAi:36617 NextBio:799515
Bgee:P91875 GermOnline:CG10122 Uniprot:P91875
Length = 1642
Score = 1272 (452.8 bits), Expect = 3.4e-220, Sum P(3) = 3.4e-220
Identities = 256/458 (55%), Positives = 331/458 (72%)
Query: 2 DGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLT 57
DG NA S +AEA L+NV+S YLVPKDG+PL GLIQDHVISG KLS+R F
Sbjct: 567 DGDEMNAHYPQSEVARAEAYNLVNVASNYLVPKDGTPLGGLIQDHVISGVKLSIRGRFFN 626
Query: 58 RAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPK--DKVIIRHGE 115
R +Y LV+Q L L +I+ LPPTI KP LW+GKQ+LST+IIN+ P+ +++ +
Sbjct: 627 REDYQQLVFQGLSQLKKDIKLLPPTILKPAVLWSGKQILSTIIINIIPEGYERINLDSFA 686
Query: 116 LLSGI---LDKKQ---FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHA 169
++G + + + G+ G + + ++ V IR+GELL G+LDK+Q+G+T YGL+H
Sbjct: 687 KIAGKNWNVSRPRPPICGTNPEG--NDLSESQVQIRNGELLVGVLDKQQYGATTYGLIHC 744
Query: 170 VWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTE 229
+++ +G + + LL+ K+FT +LQ GFTLGV+DILV DRKR KII + R +G
Sbjct: 745 MYELYGGDVSTLLLTAFTKVFTFFLQLEGFTLGVKDILVTDVADRKRRKIIRECRNVGNS 804
Query: 230 AACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLI 289
A AL L + + + +++ AY +FR +DR+YKSLLD TN+IN CLP GLI
Sbjct: 805 AVAAALELEDEPPHDELVEKMEAAYVKDSKFRVLLDRKYKSLLDGYTNDINSTCLPRGLI 864
Query: 290 EPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPR 349
FP+NNLQ MV SGAKGS VNTMQISCLLGQIELEGKRP +M+SG++LPSF +E SP+
Sbjct: 865 TKFPSNNLQLMVLSGAKGSMVNTMQISCLLGQIELEGKRPPLMISGKSLPSFTSFETSPK 924
Query: 350 AGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMT 409
+GGF+DGRFMTGIQPQ+FFFHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEGL+VHYD+T
Sbjct: 925 SGGFIDGRFMTGIQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSVHYDLT 984
Query: 410 VRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFS-FLEDN 446
VRDSD S++Q LYGEDGLD+ K ++ DK + FL N
Sbjct: 985 VRDSDNSVVQFLYGEDGLDILKSKFFNDKFCADFLTQN 1022
Score = 498 (180.4 bits), Expect = 3.4e-220, Sum P(3) = 3.4e-220
Identities = 110/262 (41%), Positives = 157/262 (59%)
Query: 480 KPNFIFSPH-RTKFTMDLLEQWYQLDDXXXXXXXXXXXXCPQPLISTFQPDAHFGSISEN 538
+PN I S R +F LL+ W + D CP P ++ ++ D ++GS+SE
Sbjct: 1081 RPNEINSKTGRRRFDEGLLKLWKKADAEDKALYRKKYARCPDPTVAVYKQDLYYGSVSER 1140
Query: 539 LADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTF 598
+ Y K R A + D++ K + SLA PGE VG++AAQSIGEPSTQMTLNTF
Sbjct: 1141 TRKLITDYAK-RKPALK-ETIADIMRVKTIKSLAAPGEPVGLIAAQSIGEPSTQMTLNTF 1198
Query: 599 HFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITM 658
HFAGRG+MNVTLGIPRLREILM+A+ IKTPSM+IP P + +A +L ++ +T+
Sbjct: 1199 HFAGRGEMNVTLGIPRLREILMLASSNIKTPSMDIPIKPGQ---QHQAEKLRINLNSVTL 1255
Query: 659 ADVLEKVKIKEWLEISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEV 718
A++LE V + L + PE Y M+F F+P +Y++ V+P II + + F K+L
Sbjct: 1256 ANLLEYVHVSTGLTLDPERSYEYDMRFQFLPREVYKEDYGVRPKHIIKYMHQTFFKQLIR 1315
Query: 719 AIAK--RAAQGLKNMNIEQSRD 738
AI K A++ K + I+ +D
Sbjct: 1316 AILKVSNASRTTKIVVIDDKKD 1337
Score = 396 (144.5 bits), Expect = 3.4e-220, Sum P(3) = 3.4e-220
Identities = 76/148 (51%), Positives = 108/148 (72%)
Query: 859 LFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKN 918
+++ + LLKTDGIN+ + Q+ +LDLN+LY NDIH +A TYGIEAA++VI++EV N
Sbjct: 1490 IYKGNDDDQLLKTDGINIGEMFQHNKILDLNRLYSNDIHAIARTYGIEAASQVIVKEVSN 1549
Query: 919 VFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQ 978
VF VYGI VD RHLSL+ADYMT GT+ ++R G+ + S +Q+M+FE L+ ++ A+
Sbjct: 1550 VFKVYGITVDRRHLSLIADYMTFDGTFQPLSRKGMEHSSSPLQQMSFESSLQFLKSAAGF 1609
Query: 979 GREDSLRAPSARVMLGQECRQGTGLFQL 1006
GR D L +PS+R+M+G R GTG F+L
Sbjct: 1610 GRADELSSPSSRLMVGLPVRNGTGAFEL 1637
Score = 84 (34.6 bits), Expect = 2.9e-187, Sum P(3) = 2.9e-187
Identities = 33/167 (19%), Positives = 72/167 (43%)
Query: 834 HNIVHKYSYDKKNHMWCKLLFLPSNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYV 893
+++V Y+YDK+NH+WC++ S +++ + +++ + + + Q +H+
Sbjct: 1435 NDMVKAYTYDKENHLWCQVKLNLSVRYQKPDLTSIIR-ELAGKSVVHQVQHIKRAIIYKG 1493
Query: 894 NDIHYMASTYGIEAA-----------NRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHS 942
ND + T GI NR+ ++ + YGIE + +V +
Sbjct: 1494 NDDDQLLKTDGINIGEMFQHNKILDLNRLYSNDIHAIARTYGIEAASQ--VIVKEVSNVF 1551
Query: 943 GTY-VAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPS 988
Y + ++R + L + MTF+ + + + M+ L+ S
Sbjct: 1552 KVYGITVDRRHLSLIADY---MTFDGTFQPLSRKGMEHSSSPLQQMS 1595
Score = 39 (18.8 bits), Expect = 8.8e-79, Sum P(3) = 8.8e-79
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 82 TIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSG 119
T + P + ++ L+ ++++ PKD + I H +L+G
Sbjct: 486 TTYIPADNASKRESLAKLLLS-NPKDGIKIVHRHVLNG 522
>UNIPROTKB|O95602 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase I subunit RPA1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=NAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=TAS] [GO:0006361 "transcription
initiation from RNA polymerase I promoter" evidence=TAS]
[GO:0006362 "transcription elongation from RNA polymerase I
promoter" evidence=TAS] [GO:0006363 "termination of RNA polymerase
I transcription" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 EMBL:CH471053
GO:GO:0005654 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0009303
Reactome:REACT_1788 GO:GO:0006363 GO:GO:0006362 GO:GO:0006361
GO:GO:0005736 GO:GO:0003899 eggNOG:COG0086 KO:K02999 OMA:CLLNETT
PANTHER:PTHR19376:SF11 EMBL:U33460 EMBL:AH007280 EMBL:AK302458
EMBL:BC117173 EMBL:BC126303 EMBL:AL117467 IPI:IPI00031960
PIR:T17252 RefSeq:NP_056240.2 UniGene:Hs.531818
ProteinModelPortal:O95602 SMR:O95602 DIP:DIP-27537N IntAct:O95602
MINT:MINT-111492 STRING:O95602 PhosphoSite:O95602
SWISS-2DPAGE:O95602 PaxDb:O95602 PRIDE:O95602
Ensembl:ENST00000263857 GeneID:25885 KEGG:hsa:25885 UCSC:uc002sqs.3
CTD:25885 GeneCards:GC02M086253 H-InvDB:HIX0002233 HGNC:HGNC:17264
HPA:CAB010145 neXtProt:NX_O95602 PharmGKB:PA134891380
HOGENOM:HOG000205401 HOVERGEN:HBG017741 InParanoid:O95602
OrthoDB:EOG41VK23 ChiTaRS:POLR1A GenomeRNAi:25885 NextBio:47304
PMAP-CutDB:O95602 ArrayExpress:O95602 Bgee:O95602 CleanEx:HS_POLR1A
Genevestigator:O95602 GermOnline:ENSG00000068654 Uniprot:O95602
Length = 1720
Score = 1190 (424.0 bits), Expect = 2.3e-213, Sum P(4) = 2.3e-213
Identities = 246/460 (53%), Positives = 318/460 (69%)
Query: 2 DGWTQNASHFL-----KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA HF +AEA L QYLVPKDG PL+GLIQDH++SGA ++ R F
Sbjct: 590 DGDEMNA-HFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFF 648
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR-HGE 115
TR YM LVY+ L ++ L P+I KP PLWTGKQV+ST++IN+ P+D + + G+
Sbjct: 649 TREHYMELVYRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGK 708
Query: 116 L-LSGILDKKQFGSTQYGL-VHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDT 173
++G K+ + G ++ ++ V IR GELL G+LDK +GS+ YGLVH ++
Sbjct: 709 AKITGKAWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEI 768
Query: 174 HGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGTEAAC 232
+G E + +L+CLA+LFT YLQ GFTLGV DILV+ + D KR +II ++ G +A
Sbjct: 769 YGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGPQAVR 828
Query: 233 NALGLPLDTDPEIISSQLQEAYASIPQ--FRAQIDRQYKSLLDKVTNNINQVCLPEGLIE 290
AL LP + + + Q+A+ Q F ID ++K ++ +N IN+ C+P GL
Sbjct: 829 AALNLPEAASYDEVRGKWQDAHLGKDQRDFN-MIDLKFKEEVNHYSNEINKACMPFGLHR 887
Query: 291 PFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRA 350
FP N+LQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PYE +PRA
Sbjct: 888 QFPENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRA 947
Query: 351 GGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTV 410
GGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V YD+TV
Sbjct: 948 GGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTV 1007
Query: 411 RDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWI 450
RDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I
Sbjct: 1008 RDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVI 1047
Score = 484 (175.4 bits), Expect = 2.3e-213, Sum P(4) = 2.3e-213
Identities = 105/261 (40%), Positives = 155/261 (59%)
Query: 489 RTKFTMDLLEQWYQLDDXXXXXXXXXXXXCPQPLISTFQPDAHFGSISENLADSVVKYTK 548
R+ T ++L WY+LD+ CP P +S ++PD +F S+SE V Y++
Sbjct: 1113 RSPGTQEMLRMWYELDEESRRKYQKKAAACPDPSLSVWRPDIYFASVSETFETKVDDYSQ 1172
Query: 549 ---GRTDASH------VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFH 599
+T+ S+ +D+ ++ K SL PGE VG+LAAQSIGEPSTQMTLNTFH
Sbjct: 1173 EWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFH 1232
Query: 600 FAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMA 659
FAGRG+MNVTLGIPRLREILM+A+ IKTP M +P L + K K+ L K +TR+ +
Sbjct: 1233 FAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVL-NTKKALKRVKSLKKQLTRVCLG 1291
Query: 660 DVLEKVKIKE--WLEISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELE 717
+VL+K+ ++E +E YQ++F F+P Y+ + ++P I+ E +F K L
Sbjct: 1292 EVLQKIDVQESFCMEEKQNKFQVYQLRFQFLPHAYYQQEKCLRPEDILRFMETRFFKLLM 1351
Query: 718 VAIAKR--AAQGLKNMNIEQS 736
+I K+ A +N+N ++
Sbjct: 1352 ESIKKKNNKASAFRNVNTRRA 1372
Score = 408 (148.7 bits), Expect = 2.3e-213, Sum P(4) = 2.3e-213
Identities = 89/166 (53%), Positives = 116/166 (69%)
Query: 842 YDKKNHMWCKLLFLPSNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMAS 901
Y K C LL +N EKE +L T+GIN+ + +Y +LDL +LY NDIH +A+
Sbjct: 1554 YATKGITRC-LLNETTNNKNEKEL--VLNTEGINLPELFKYAEVLDLRRLYSNDIHAIAN 1610
Query: 902 TYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQ 961
TYGIEAA RVI +E+K+VFAVYGI VDPRHLSLVADYM G Y +NR GIR N S +Q
Sbjct: 1611 TYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIRSNSSPLQ 1670
Query: 962 KMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLR 1007
+MTFE + ++QA+M G D LR+PSA +++G+ R GTGLF+L+
Sbjct: 1671 QMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVRGGTGLFELK 1716
Score = 51 (23.0 bits), Expect = 2.3e-213, Sum P(4) = 2.3e-213
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 827 VKDVVNQHNIVHKYSYDKKNHMWCKL 852
V+ V H + Y YD + +WC++
Sbjct: 1502 VQAVREIHPFIDDYQYDTEESLWCQV 1527
>UNIPROTKB|F1SVC3 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0005736 GO:GO:0003899
OMA:CLLNETT PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861
EMBL:CU570839 Ensembl:ENSSSCT00000009008 Uniprot:F1SVC3
Length = 1723
Score = 1202 (428.2 bits), Expect = 9.4e-213, Sum P(4) = 9.4e-213
Identities = 249/464 (53%), Positives = 319/464 (68%)
Query: 2 DGWTQNASHFL-----KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA HF +AEA L QYLVPKDG PL+GLIQDH++SGA +++R F
Sbjct: 594 DGDEMNA-HFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFF 652
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRH-GE 115
TR +YM LVY+ L ++ PP I KP PLWTGKQV+ST++IN+ P+D++ + G+
Sbjct: 653 TREQYMELVYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDQIPLNLLGK 712
Query: 116 L-LSGILDKKQFGSTQYGL-VHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDT 173
+ G K+ G + + ++ V IR GELL G+LDK +GS+ YGLVH ++
Sbjct: 713 AKIGGKAWVKEAPRPVPGFNPNLMCESQVVIRDGELLCGVLDKAHYGSSAYGLVHCCYEI 772
Query: 174 HGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGTEAAC 232
+G E + +L+CLA+LFT YLQ GFTLGV DILV+ D +R +II ++ R G A
Sbjct: 773 YGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPRADVRRHRIIEESTRCGPRAVR 832
Query: 233 NALGLPLDTDPEIISSQLQEAYASIPQ--FRAQIDRQYKSLLDKVTNNINQVCLPEGLIE 290
AL LP + + + Q+A+ S Q F ID ++K ++ +N IN+ C+P GL
Sbjct: 833 AALNLPEAASCDEVRGKWQDAHLSKDQRDFN-MIDLKFKEEVNHHSNEINKACMPLGLHR 891
Query: 291 PFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRA 350
FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PYE +PRA
Sbjct: 892 QFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRA 951
Query: 351 GGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTV 410
GGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V YD+TV
Sbjct: 952 GGFVTGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTV 1011
Query: 411 RDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYK 454
RDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I K
Sbjct: 1012 RDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSK 1055
Score = 455 (165.2 bits), Expect = 9.4e-213, Sum P(4) = 9.4e-213
Identities = 102/261 (39%), Positives = 150/261 (57%)
Query: 489 RTKFTMDLLEQWYQLDDXXXXXXXXXXXXCPQPLISTFQPDAHFGSISENLADSVVKYT- 547
R+ T +L W +LD+ CP P +S ++PD +F S+SE + Y+
Sbjct: 1117 RSPETHQVLRMWSELDEQSRRKYQKKAAPCPDPSLSVWRPDIYFASVSETFEKKMDDYSL 1176
Query: 548 --KGRTDASH------VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFH 599
+ + SH +++ ++ K SL +PGE VG+LAAQSIGEPSTQMTLNTFH
Sbjct: 1177 EWAAQAEKSHEKSELSLERLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFH 1236
Query: 600 FAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMA 659
FAGRG+MNVTLGIPRLREILM+A+ IKTP M +P L KK L K +TR+ +
Sbjct: 1237 FAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVFNTRRAL-KKVKSLKKQLTRVCLG 1295
Query: 660 DVLEKVKIKEWLEISPEP--HMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELE 717
+VLEK+ ++E + + YQ++F F+P Y+ + ++P I+ E +F K L
Sbjct: 1296 EVLEKIDVQESFSMGEKQAKFRVYQLRFQFLPYACYQQEKCLRPEDILHFMETRFFKILM 1355
Query: 718 VAIAKR--AAQGLKNMNIEQS 736
+I K+ A +N+N ++
Sbjct: 1356 ESIKKKNNKASTFRNVNTRRA 1376
Score = 415 (151.1 bits), Expect = 9.4e-213, Sum P(4) = 9.4e-213
Identities = 90/166 (54%), Positives = 116/166 (69%)
Query: 842 YDKKNHMWCKLLFLPSNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMAS 901
Y K C LL +N EKE +L T+GIN+ + +Y +LDL +LY NDIH MA+
Sbjct: 1557 YATKGITRC-LLNETTNSKNEKEL--VLNTEGINLPELFKYAEVLDLRRLYSNDIHAMAN 1613
Query: 902 TYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQ 961
TYGIEAA RVI +E+K+VFAVYGI VDPRHLSLVADYM G Y +NR GIR N S +Q
Sbjct: 1614 TYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIRSNSSPLQ 1673
Query: 962 KMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLR 1007
+MTFE + ++QA+M G D LR+PSA +++G+ R GTGLF+L+
Sbjct: 1674 QMTFETSFQFLKQATMMGSHDELRSPSACLVVGKVVRGGTGLFELK 1719
Score = 53 (23.7 bits), Expect = 9.4e-213, Sum P(4) = 9.4e-213
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 827 VKDVVNQHNIVHKYSYDKKNHMWCKL 852
V+ V H ++ Y YD + +WC++
Sbjct: 1505 VRAVRECHPLIEDYQYDTEASLWCQV 1530
>MGI|MGI:1096397 [details] [associations]
symbol:Polr1a "polymerase (RNA) I polypeptide A"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=ISO;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009303 "rRNA transcription" evidence=ISO]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] Reactome:REACT_78136 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 MGI:MGI:1096397 GO:GO:0005654 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0009303 GO:GO:0005736 GO:GO:0003899 eggNOG:COG0086
CleanEx:MM_RPA1 Reactome:REACT_86751 KO:K02999 OMA:CLLNETT
PANTHER:PTHR19376:SF11 CTD:25885 HOGENOM:HOG000205401
HOVERGEN:HBG017741 OrthoDB:EOG41VK23 ChiTaRS:POLR1A EMBL:AF000938
EMBL:BC053744 IPI:IPI00313726 PIR:T13961 RefSeq:NP_033114.3
UniGene:Mm.135581 ProteinModelPortal:O35134 SMR:O35134
STRING:O35134 PhosphoSite:O35134 PaxDb:O35134 PRIDE:O35134
Ensembl:ENSMUST00000055296 GeneID:20019 KEGG:mmu:20019
UCSC:uc009chv.2 GeneTree:ENSGT00550000074861 InParanoid:O35134
NextBio:297531 Bgee:O35134 Genevestigator:O35134
GermOnline:ENSMUSG00000049553 Uniprot:O35134
Length = 1717
Score = 1191 (424.3 bits), Expect = 9.5e-212, Sum P(4) = 9.5e-212
Identities = 247/465 (53%), Positives = 317/465 (68%)
Query: 2 DGWTQNASHFL-----KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA HF +AEA L QYLVPKDG PL+GLIQDH++SGA +++R F
Sbjct: 597 DGDEMNA-HFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFF 655
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR-HGE 115
TR +YM LVY+ L ++ PP I KP PLWTGKQV+ST++IN+ P+D + G+
Sbjct: 656 TREQYMELVYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDYAPLNLSGK 715
Query: 116 LLSGI---LDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWD 172
G + +K + ++ ++ V IR GELL G+LDK +GS+ YGLVH ++
Sbjct: 716 AKIGSKAWVKEKPRPIPDFD-PDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYE 774
Query: 173 THGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGTEAA 231
+G E + +L+CLA+LFT YLQ GFTLGV DILV+ D R +II ++ + G +A
Sbjct: 775 IYGGETSGRVLTCLARLFTAYLQLYRGFTLGVEDILVKPNADVVRQRIIEESTQCGPQAV 834
Query: 232 CNALGLPLDTDPEIISSQLQEAYASIPQ--FRAQIDRQYKSLLDKVTNNINQVCLPEGLI 289
AL LP + I + Q+A+ S Q F ID ++K ++ +N IN+ C+P GL
Sbjct: 835 KAALSLPETASCDEIQGKWQDAHLSKDQRDFN-MIDMKFKEEVNHYSNEINKACMPLGLH 893
Query: 290 EPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPR 349
FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PYE +PR
Sbjct: 894 RQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPR 953
Query: 350 AGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMT 409
AGGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL + YD+T
Sbjct: 954 AGGFVTGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVIQYDLT 1013
Query: 410 VRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYK 454
VRDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I K
Sbjct: 1014 VRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLAGNYEVIMKSK 1058
Score = 469 (170.2 bits), Expect = 9.5e-212, Sum P(4) = 9.5e-212
Identities = 104/257 (40%), Positives = 152/257 (59%)
Query: 489 RTKFTMDLLEQWYQLDDXXXXXXXXXXXXCPQPLISTFQPDAHFGSISENLADSVVKYTK 548
R+ T +L+ WY LD+ CP P +S ++PD +F S+SE + +++
Sbjct: 1120 RSPETQQMLQMWYDLDEESRWKYQKRAAPCPDPSLSVWRPDIYFASVSETFEKKIDDFSQ 1179
Query: 549 ---GRTDASH------VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFH 599
+ + S+ +D+ ++ K SL +PGE VG+LAAQSIGEPSTQMTLNTFH
Sbjct: 1180 EWAAQAERSYKKSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFH 1239
Query: 600 FAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMA 659
FAGRG+MNVTLGIPRLREILM+A+ IKTP M +P D K KK L K +TR+ +
Sbjct: 1240 FAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVF-DTKKALKKVKSLKKRLTRVCLG 1298
Query: 660 DVLEKVKIKEWLEISPEPH--MNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELE 717
+VL+KV I+E + + + Y+++F F+P Y+ + ++P I+ E +F K L
Sbjct: 1299 EVLQKVDIQESFCMGEKRNKFQVYELRFQFLPHAYYQQEKCLRPEDILHFMETRFFKLLM 1358
Query: 718 VAIAKRA--AQGLKNMN 732
AI K+ A +N+N
Sbjct: 1359 EAIKKKKNKASAFRNVN 1375
Score = 406 (148.0 bits), Expect = 9.5e-212, Sum P(4) = 9.5e-212
Identities = 88/174 (50%), Positives = 120/174 (68%)
Query: 835 NIVHK-YSYDKKNHMWCKLLFLPSNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYV 893
++ HK Y K C LL +N EKE +L T+GIN+ + +Y +LDL +LY
Sbjct: 1543 SLAHKAIVYTTKGITRC-LLNETTNSKNEKEL--VLNTEGINLPELFKYSEILDLRRLYS 1599
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
NDIH MA+TYGIEAA RVI +E+K+VFAVYGI VDPRHLSLVADYM G Y +NR GI
Sbjct: 1600 NDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI 1659
Query: 954 RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLR 1007
+ + S +Q+MTFE + ++QA+M G D L++PSA +++G+ + GTGLF+L+
Sbjct: 1660 QSSSSPLQQMTFETSFQFLKQATMMGSHDELKSPSACLVVGKVVKGGTGLFELK 1713
Score = 51 (23.0 bits), Expect = 9.5e-212, Sum P(4) = 9.5e-212
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 827 VKDVVNQHNIVHKYSYDKKNHMWCKL 852
++ V ++ + Y YD + +WC++
Sbjct: 1499 IQAVRESYSFIEDYQYDTEESLWCQV 1524
>UNIPROTKB|J9P5G4 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 KO:K02999 PANTHER:PTHR19376:SF11
CTD:25885 GeneTree:ENSGT00550000074861 EMBL:AAEX03010931
RefSeq:XP_532976.3 Ensembl:ENSCAFT00000047500 GeneID:475766
KEGG:cfa:475766 Uniprot:J9P5G4
Length = 1717
Score = 1198 (426.8 bits), Expect = 1.1e-211, Sum P(4) = 1.1e-211
Identities = 247/466 (53%), Positives = 319/466 (68%)
Query: 2 DGWTQNASHFL-----KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA HF +AEA L QYLVPKDG PL+GLIQDH++SGA +++R F
Sbjct: 590 DGDEMNA-HFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFF 648
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR-HGE 115
TR +YM L+Y+ L ++ PP I KP PLWTGKQV+ST++IN+ P+D + + G+
Sbjct: 649 TREQYMELLYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDHIPLSLSGK 708
Query: 116 L-LSGILDKKQFGSTQYGL-VHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDT 173
+SG ++ G ++ ++ V IR GELL G+LDK +GS+ YGLVH ++
Sbjct: 709 AKISGKAWVQESPRPVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEI 768
Query: 174 HGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGTEAAC 232
+G E + +L+CLA+LFT YLQ GFTLGV DILV+++ D KR +I ++ G A
Sbjct: 769 YGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKRKADMKRHLVIEESTHCGPRAVR 828
Query: 233 NALGLPLDTDPEIISSQLQEAYASIPQ--FRAQIDRQYKSLLDKVTNNINQVCLPEGLIE 290
AL LP + + + Q+A+ Q F ID ++K ++ +N IN+ C+P GL
Sbjct: 829 AALNLPEAASCDEVRGKWQDAHLGKDQRDFN-MIDLKFKEEVNHYSNEINKACMPFGLHR 887
Query: 291 PFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRA 350
FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PYE +PRA
Sbjct: 888 QFPDNNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRA 947
Query: 351 GGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTV 410
GGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V YD+TV
Sbjct: 948 GGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTV 1007
Query: 411 RDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVI 456
RDSD S++Q LYGEDGLD+ K Q+L KQF FL N K I K +
Sbjct: 1008 RDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYKVIMKSKYL 1053
Score = 449 (163.1 bits), Expect = 1.1e-211, Sum P(4) = 1.1e-211
Identities = 100/261 (38%), Positives = 152/261 (58%)
Query: 489 RTKFTMDLLEQWYQLDDXXXXXXXXXXXXCPQPLISTFQPDAHFGSISENLADSVVKYT- 547
R+ T +L+ W +LD+ CP P ++ ++PD +F S+SE V Y+
Sbjct: 1113 RSLGTHQILKMWGELDEQSRRKYQKKAAPCPDPSLAVWRPDIYFASVSETFEKKVDDYSL 1172
Query: 548 --KGRTDASH------VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFH 599
+ + S+ +D+ ++ K SL +PGE VG+LAAQSIGEPSTQMTLNTFH
Sbjct: 1173 EWAAQAEKSYKKSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFH 1232
Query: 600 FAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMA 659
FAGRG+MNVTLGIPRLREILM+A+ IKTP M +P + K K+ L K +TR+ +
Sbjct: 1233 FAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVF-NTKKALKRVKSLKKQLTRVCLG 1291
Query: 660 DVLEKVKIKEWLEISP--EPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELE 717
+VLEK+ ++E I + YQ++F F+P Y+ + ++P I+ E +F K L
Sbjct: 1292 EVLEKIDVQESFCIGEKQDKFQVYQLRFQFLPHAYYQQEKCLRPEDILHFMETRFFKILM 1351
Query: 718 VAIAKR--AAQGLKNMNIEQS 736
++ K+ A +++N ++
Sbjct: 1352 ESLRKKNNKASAFRSVNTRRA 1372
Score = 413 (150.4 bits), Expect = 1.1e-211, Sum P(4) = 1.1e-211
Identities = 89/166 (53%), Positives = 117/166 (70%)
Query: 842 YDKKNHMWCKLLFLPSNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMAS 901
Y K C LL +N EKE +L T+GIN+ + +Y +LDL++LY NDIH MAS
Sbjct: 1551 YATKGITRC-LLNETTNKKNEKEL--VLNTEGINLPELFKYAEVLDLSRLYSNDIHAMAS 1607
Query: 902 TYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQ 961
TYGIEAA RVI +E+++VFAVYGI VDPRHLSLVADYM G Y +NR GIR N S +Q
Sbjct: 1608 TYGIEAALRVIEKEIRDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIRSNSSPLQ 1667
Query: 962 KMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLR 1007
+MTFE + ++QA+M G D LR+PSA +++G+ + GTGLF+L+
Sbjct: 1668 QMTFETSFQFLKQATMMGSHDELRSPSACLVVGKVVKGGTGLFELK 1713
Score = 55 (24.4 bits), Expect = 1.1e-211, Sum P(4) = 1.1e-211
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 827 VKDVVNQHNIVHKYSYDKKNHMWCKL 852
V+ V H + Y YD + +WC++
Sbjct: 1499 VQAVRESHPFIEDYQYDTEESLWCQV 1524
Score = 37 (18.1 bits), Expect = 2.4e-33, Sum P(3) = 2.4e-33
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 664 KVKIKEWLEISPEP 677
K+ K W++ SP P
Sbjct: 710 KISGKAWVQESPRP 723
>UNIPROTKB|E2R0G4 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 OMA:CLLNETT PANTHER:PTHR19376:SF11
GeneTree:ENSGT00550000074861 EMBL:AAEX03010931
Ensembl:ENSCAFT00000012228 Uniprot:E2R0G4
Length = 1746
Score = 1198 (426.8 bits), Expect = 3.1e-211, Sum P(4) = 3.1e-211
Identities = 247/466 (53%), Positives = 319/466 (68%)
Query: 2 DGWTQNASHFL-----KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA HF +AEA L QYLVPKDG PL+GLIQDH++SGA +++R F
Sbjct: 602 DGDEMNA-HFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFF 660
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR-HGE 115
TR +YM L+Y+ L ++ PP I KP PLWTGKQV+ST++IN+ P+D + + G+
Sbjct: 661 TREQYMELLYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDHIPLSLSGK 720
Query: 116 L-LSGILDKKQFGSTQYGL-VHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDT 173
+SG ++ G ++ ++ V IR GELL G+LDK +GS+ YGLVH ++
Sbjct: 721 AKISGKAWVQESPRPVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEI 780
Query: 174 HGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGTEAAC 232
+G E + +L+CLA+LFT YLQ GFTLGV DILV+++ D KR +I ++ G A
Sbjct: 781 YGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKRKADMKRHLVIEESTHCGPRAVR 840
Query: 233 NALGLPLDTDPEIISSQLQEAYASIPQ--FRAQIDRQYKSLLDKVTNNINQVCLPEGLIE 290
AL LP + + + Q+A+ Q F ID ++K ++ +N IN+ C+P GL
Sbjct: 841 AALNLPEAASCDEVRGKWQDAHLGKDQRDFN-MIDLKFKEEVNHYSNEINKACMPFGLHR 899
Query: 291 PFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRA 350
FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PYE +PRA
Sbjct: 900 QFPDNNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRA 959
Query: 351 GGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTV 410
GGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V YD+TV
Sbjct: 960 GGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTV 1019
Query: 411 RDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVI 456
RDSD S++Q LYGEDGLD+ K Q+L KQF FL N K I K +
Sbjct: 1020 RDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYKVIMKSKYL 1065
Score = 449 (163.1 bits), Expect = 3.1e-211, Sum P(4) = 3.1e-211
Identities = 100/261 (38%), Positives = 152/261 (58%)
Query: 489 RTKFTMDLLEQWYQLDDXXXXXXXXXXXXCPQPLISTFQPDAHFGSISENLADSVVKYT- 547
R+ T +L+ W +LD+ CP P ++ ++PD +F S+SE V Y+
Sbjct: 1125 RSLGTHQILKMWGELDEQSRRKYQKKAAPCPDPSLAVWRPDIYFASVSETFEKKVDDYSL 1184
Query: 548 --KGRTDASH------VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFH 599
+ + S+ +D+ ++ K SL +PGE VG+LAAQSIGEPSTQMTLNTFH
Sbjct: 1185 EWAAQAEKSYKKSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFH 1244
Query: 600 FAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMA 659
FAGRG+MNVTLGIPRLREILM+A+ IKTP M +P + K K+ L K +TR+ +
Sbjct: 1245 FAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVF-NTKKALKRVKSLKKQLTRVCLG 1303
Query: 660 DVLEKVKIKEWLEISP--EPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELE 717
+VLEK+ ++E I + YQ++F F+P Y+ + ++P I+ E +F K L
Sbjct: 1304 EVLEKIDVQESFCIGEKQDKFQVYQLRFQFLPHAYYQQEKCLRPEDILHFMETRFFKILM 1363
Query: 718 VAIAKR--AAQGLKNMNIEQS 736
++ K+ A +++N ++
Sbjct: 1364 ESLRKKNNKASAFRSVNTRRA 1384
Score = 413 (150.4 bits), Expect = 3.1e-211, Sum P(4) = 3.1e-211
Identities = 89/166 (53%), Positives = 117/166 (70%)
Query: 842 YDKKNHMWCKLLFLPSNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMAS 901
Y K C LL +N EKE +L T+GIN+ + +Y +LDL++LY NDIH MAS
Sbjct: 1580 YATKGITRC-LLNETTNKKNEKEL--VLNTEGINLPELFKYAEVLDLSRLYSNDIHAMAS 1636
Query: 902 TYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQ 961
TYGIEAA RVI +E+++VFAVYGI VDPRHLSLVADYM G Y +NR GIR N S +Q
Sbjct: 1637 TYGIEAALRVIEKEIRDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIRSNSSPLQ 1696
Query: 962 KMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLR 1007
+MTFE + ++QA+M G D LR+PSA +++G+ + GTGLF+L+
Sbjct: 1697 QMTFETSFQFLKQATMMGSHDELRSPSACLVVGKVVKGGTGLFELK 1742
Score = 55 (24.4 bits), Expect = 3.1e-211, Sum P(4) = 3.1e-211
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 827 VKDVVNQHNIVHKYSYDKKNHMWCKL 852
V+ V H + Y YD + +WC++
Sbjct: 1528 VQAVRESHPFIEDYQYDTEESLWCQV 1553
Score = 37 (18.1 bits), Expect = 2.6e-33, Sum P(3) = 2.6e-33
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 664 KVKIKEWLEISPEP 677
K+ K W++ SP P
Sbjct: 722 KISGKAWVQESPRP 735
>UNIPROTKB|E1BIX2 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9913
"Bos taurus" [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0005736 GO:GO:0003899
KO:K02999 OMA:CLLNETT PANTHER:PTHR19376:SF11 CTD:25885
GeneTree:ENSGT00550000074861 EMBL:DAAA02031123 IPI:IPI00714586
RefSeq:NP_001179805.1 UniGene:Bt.52712 PRIDE:E1BIX2
Ensembl:ENSBTAT00000008496 GeneID:536316 KEGG:bta:536316
NextBio:20876927 Uniprot:E1BIX2
Length = 1717
Score = 1183 (421.5 bits), Expect = 3.8e-211, Sum P(4) = 3.8e-211
Identities = 246/464 (53%), Positives = 315/464 (67%)
Query: 2 DGWTQNASHFL-----KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA HF +AEA L QYLVPKDG PL+GLIQDH++SGA +++R F
Sbjct: 590 DGDEMNA-HFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFF 648
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR-HGE 115
R +YM LV++ L ++ PP I KP PLWTGKQV+ST++IN+ P+D + + G+
Sbjct: 649 NREQYMELVFRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGK 708
Query: 116 L-LSGILDKKQFGSTQYGL-VHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDT 173
+ G K+ G ++ ++ V IR GELL G+LDK +GS+ YGLVH ++
Sbjct: 709 AKIGGKAWVKESPRLVPGFNPDSMCESQVIIRAGELLCGVLDKAHYGSSAYGLVHCCYEI 768
Query: 174 HGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGTEAAC 232
+G E + +L+CLA+LFT YLQ GFTLGV DILV+ + D +R II + G A
Sbjct: 769 YGGETSGRVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADVRRHGIIEDSTHCGPRAVR 828
Query: 233 NALGLPLDTDPEIISSQLQEAYASIPQ--FRAQIDRQYKSLLDKVTNNINQVCLPEGLIE 290
AL LP + + + Q+A+ S Q F ID ++K ++ +N IN+ C+P GL
Sbjct: 829 AALNLPEAVSCDEVQGKWQDAHLSKDQRDFN-MIDLKFKEEVNHYSNEINKACMPFGLHR 887
Query: 291 PFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRA 350
FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PYE +PRA
Sbjct: 888 QFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRA 947
Query: 351 GGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTV 410
GGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V YD+TV
Sbjct: 948 GGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTV 1007
Query: 411 RDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYK 454
RDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I K
Sbjct: 1008 RDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLTSNYEVIMKSK 1051
Score = 466 (169.1 bits), Expect = 3.8e-211, Sum P(4) = 3.8e-211
Identities = 104/261 (39%), Positives = 150/261 (57%)
Query: 489 RTKFTMDLLEQWYQLDDXXXXXXXXXXXXCPQPLISTFQPDAHFGSISENLADSVVKYT- 547
R+ T +L W +LD+ CP P +S ++PD +F S+SE + Y+
Sbjct: 1113 RSPETYQMLRMWAELDEQSRRKYQKKAAPCPDPSLSVWRPDIYFASVSETFEKKMDDYSC 1172
Query: 548 --KGRTDASH------VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFH 599
+ + S+ +D ++ K SL +PGE VG+LAAQSIGEPSTQMTLNTFH
Sbjct: 1173 EWAAQAERSYEKSGLSLDSLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFH 1232
Query: 600 FAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMA 659
FAGRG+MNVTLGIPRLREILM+A+ IKTP M +P + K KK L K +TR+ +
Sbjct: 1233 FAGRGEMNVTLGIPRLREILMVASSNIKTPMMSVPVF-NTKKALKKVKSLKKQLTRVCLG 1291
Query: 660 DVLEKVKIKEWLEISPEPHMN--YQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELE 717
+VLEK+ ++E I + + YQ++F F+P Y+ + +P I+ E +F K L
Sbjct: 1292 EVLEKIDVQESFRIGEKQNKFRVYQLRFQFLPHAYYQQEKCTRPEDILHFMETRFFKILM 1351
Query: 718 VAIAKR--AAQGLKNMNIEQS 736
AI K+ A +N+N ++
Sbjct: 1352 EAIRKKNSKASAFRNVNTRKA 1372
Score = 410 (149.4 bits), Expect = 3.8e-211, Sum P(4) = 3.8e-211
Identities = 82/153 (53%), Positives = 111/153 (72%)
Query: 855 LPSNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIR 914
L + + E + +L T+GIN+ + +Y +LDL +LY NDIH MASTYGIEAA RVI +
Sbjct: 1561 LNETINSKNEKELVLNTEGINLPELFKYAEVLDLRRLYSNDIHAMASTYGIEAALRVIEK 1620
Query: 915 EVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQ 974
E+K+VFAVYGI VDPRHLSLVADYM G Y +NR GIR N S +Q+MTFE + ++Q
Sbjct: 1621 EIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIRSNSSPLQQMTFETSFQFLKQ 1680
Query: 975 ASMQGREDSLRAPSARVMLGQECRQGTGLFQLR 1007
A++ G D LR+PSA +++G+ + GTGLF+L+
Sbjct: 1681 ATLMGSHDELRSPSACLVVGKVVKGGTGLFELK 1713
Score = 54 (24.1 bits), Expect = 3.8e-211, Sum P(4) = 3.8e-211
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 834 HNIVHKYSYDKKNHMWCKL-LFLP 856
H + Y YD + +WC++ L LP
Sbjct: 1506 HPFIEDYQYDTQGSLWCQVTLKLP 1529
>UNIPROTKB|B9ZVN9 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 EMBL:AC009309 PANTHER:PTHR19376:SF11 HGNC:HGNC:17264
HOGENOM:HOG000205401 ChiTaRS:POLR1A EMBL:AC012511 IPI:IPI00916060
ProteinModelPortal:B9ZVN9 STRING:B9ZVN9 Ensembl:ENST00000409681
ArrayExpress:B9ZVN9 Bgee:B9ZVN9 Uniprot:B9ZVN9
Length = 1659
Score = 1190 (424.0 bits), Expect = 6.2e-211, Sum P(3) = 6.2e-211
Identities = 246/460 (53%), Positives = 318/460 (69%)
Query: 2 DGWTQNASHFL-----KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA HF +AEA L QYLVPKDG PL+GLIQDH++SGA ++ R F
Sbjct: 590 DGDEMNA-HFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFF 648
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR-HGE 115
TR YM LVY+ L ++ L P+I KP PLWTGKQV+ST++IN+ P+D + + G+
Sbjct: 649 TREHYMELVYRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGK 708
Query: 116 L-LSGILDKKQFGSTQYGL-VHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDT 173
++G K+ + G ++ ++ V IR GELL G+LDK +GS+ YGLVH ++
Sbjct: 709 AKITGKAWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEI 768
Query: 174 HGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGTEAAC 232
+G E + +L+CLA+LFT YLQ GFTLGV DILV+ + D KR +II ++ G +A
Sbjct: 769 YGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGPQAVR 828
Query: 233 NALGLPLDTDPEIISSQLQEAYASIPQ--FRAQIDRQYKSLLDKVTNNINQVCLPEGLIE 290
AL LP + + + Q+A+ Q F ID ++K ++ +N IN+ C+P GL
Sbjct: 829 AALNLPEAASYDEVRGKWQDAHLGKDQRDFN-MIDLKFKEEVNHYSNEINKACMPFGLHR 887
Query: 291 PFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRA 350
FP N+LQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PYE +PRA
Sbjct: 888 QFPENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRA 947
Query: 351 GGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTV 410
GGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V YD+TV
Sbjct: 948 GGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTV 1007
Query: 411 RDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWI 450
RDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I
Sbjct: 1008 RDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVI 1047
Score = 484 (175.4 bits), Expect = 6.2e-211, Sum P(3) = 6.2e-211
Identities = 105/261 (40%), Positives = 155/261 (59%)
Query: 489 RTKFTMDLLEQWYQLDDXXXXXXXXXXXXCPQPLISTFQPDAHFGSISENLADSVVKYTK 548
R+ T ++L WY+LD+ CP P +S ++PD +F S+SE V Y++
Sbjct: 1113 RSPGTQEMLRMWYELDEESRRKYQKKAAACPDPSLSVWRPDIYFASVSETFETKVDDYSQ 1172
Query: 549 ---GRTDASH------VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFH 599
+T+ S+ +D+ ++ K SL PGE VG+LAAQSIGEPSTQMTLNTFH
Sbjct: 1173 EWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFH 1232
Query: 600 FAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMA 659
FAGRG+MNVTLGIPRLREILM+A+ IKTP M +P L + K K+ L K +TR+ +
Sbjct: 1233 FAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVL-NTKKALKRVKSLKKQLTRVCLG 1291
Query: 660 DVLEKVKIKE--WLEISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELE 717
+VL+K+ ++E +E YQ++F F+P Y+ + ++P I+ E +F K L
Sbjct: 1292 EVLQKIDVQESFCMEEKQNKFQVYQLRFQFLPHAYYQQEKCLRPEDILRFMETRFFKLLM 1351
Query: 718 VAIAKR--AAQGLKNMNIEQS 736
+I K+ A +N+N ++
Sbjct: 1352 ESIKKKNNKASAFRNVNTRRA 1372
Score = 408 (148.7 bits), Expect = 6.2e-211, Sum P(3) = 6.2e-211
Identities = 89/166 (53%), Positives = 116/166 (69%)
Query: 842 YDKKNHMWCKLLFLPSNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMAS 901
Y K C LL +N EKE +L T+GIN+ + +Y +LDL +LY NDIH +A+
Sbjct: 1493 YATKGITRC-LLNETTNNKNEKEL--VLNTEGINLPELFKYAEVLDLRRLYSNDIHAIAN 1549
Query: 902 TYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQ 961
TYGIEAA RVI +E+K+VFAVYGI VDPRHLSLVADYM G Y +NR GIR N S +Q
Sbjct: 1550 TYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIRSNSSPLQ 1609
Query: 962 KMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLR 1007
+MTFE + ++QA+M G D LR+PSA +++G+ R GTGLF+L+
Sbjct: 1610 QMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVRGGTGLFELK 1655
>UNIPROTKB|G3V7B7 [details] [associations]
symbol:Polr1a "DNA-directed RNA polymerase" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005736 "DNA-directed RNA polymerase I complex" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 RGD:620824 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:CH473957
GO:GO:0003899 OMA:CLLNETT PANTHER:PTHR19376:SF11
GeneTree:ENSGT00550000074861 UniGene:Rn.24877
Ensembl:ENSRNOT00000013587 Uniprot:G3V7B7
Length = 1716
Score = 1185 (422.2 bits), Expect = 1.4e-210, Sum P(4) = 1.4e-210
Identities = 246/465 (52%), Positives = 315/465 (67%)
Query: 2 DGWTQNASHFL-----KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA HF +AEA L QYLVPKDG PL+GLIQDH++SGA +++R F
Sbjct: 597 DGDEMNA-HFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFF 655
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR-HGE 115
TR +YM LVY+ L ++ PP I KP PLWTGKQV+ST++IN+ P+D + G+
Sbjct: 656 TREQYMELVYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDYTPLNLTGK 715
Query: 116 LLSGI---LDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWD 172
G + +K + ++ ++ V IR GELL G+LDK +GS+ YGLVH ++
Sbjct: 716 AKIGSKAWVKEKPRPVPDFD-PDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYE 774
Query: 173 THGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGTEAA 231
+G E + +L+CLA+LFT YLQ GFTLGV DILV+ D R +II ++ + G A
Sbjct: 775 IYGGETSGRVLTCLARLFTAYLQLYRGFTLGVEDILVKPNADVMRQRIIEESTQCGPRAV 834
Query: 232 CNALGLPLDTDPEIISSQLQEAYASIPQ--FRAQIDRQYKSLLDKVTNNINQVCLPEGLI 289
AL LP + I + Q+A+ Q F ID ++K ++ +N IN+ C+P GL
Sbjct: 835 RAALNLPEAASCDEIQGKWQDAHLGKDQRDFN-MIDMKFKEEVNHYSNEINKACMPFGLH 893
Query: 290 EPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPR 349
FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PYE +PR
Sbjct: 894 RQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPR 953
Query: 350 AGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMT 409
AGGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL + YD+T
Sbjct: 954 AGGFVTGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVIQYDLT 1013
Query: 410 VRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYK 454
VRDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I K
Sbjct: 1014 VRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSK 1058
Score = 469 (170.2 bits), Expect = 1.4e-210, Sum P(4) = 1.4e-210
Identities = 102/261 (39%), Positives = 155/261 (59%)
Query: 489 RTKFTMDLLEQWYQLDDXXXXXXXXXXXXCPQPLISTFQPDAHFGSISENLADSVVKYTK 548
R+ T +L+ W++LD+ CP P +S ++PD HF S+SE + Y++
Sbjct: 1120 RSPETQQMLQMWHELDEQSRRKYQKRAAPCPDPSLSVWRPDIHFASVSETFEKKIDDYSQ 1179
Query: 549 ---GRTDASH------VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFH 599
+ + SH +D+ ++ K SL +PGE VG+LAAQSIGEPSTQMTLNTFH
Sbjct: 1180 EWAAQAEKSHNRSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFH 1239
Query: 600 FAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMA 659
FAGRG+MNVTLGIPRLREILM+A+ IKTP M +P + K ++ L K +TR+ +
Sbjct: 1240 FAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVF-NTKKALRRVKSLKKQLTRVCLG 1298
Query: 660 DVLEKVKIKEWLEISPEPHMN--YQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELE 717
+VL+KV I+E + + + Y+++F F+P Y+ + ++P I+ E +F K L
Sbjct: 1299 EVLQKVDIQESFCMGEKQNKFRVYELRFQFLPHAYYQQEKCLRPEDILHFMETRFFKLLM 1358
Query: 718 VAIAKR--AAQGLKNMNIEQS 736
AI K+ A +++N ++
Sbjct: 1359 EAIKKKNSKASAFRSVNTRRA 1379
Score = 396 (144.5 bits), Expect = 1.4e-210, Sum P(4) = 1.4e-210
Identities = 78/153 (50%), Positives = 111/153 (72%)
Query: 855 LPSNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIR 914
L + + E + +L T+GIN+ + +Y +LDL +LY NDIH +A+TYGIEAA RVI +
Sbjct: 1560 LNETINSKNEKEFVLNTEGINLPELFKYSEVLDLRRLYSNDIHAVANTYGIEAALRVIEK 1619
Query: 915 EVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQ 974
E+K+VFAVYGI VDPRHLSLVADYM G Y +NR GI+ + S +Q+MTFE + ++Q
Sbjct: 1620 EIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIQSSSSPLQQMTFETSFQFLKQ 1679
Query: 975 ASMQGREDSLRAPSARVMLGQECRQGTGLFQLR 1007
A+M G D L++PSA +++G+ + GTGLF+L+
Sbjct: 1680 ATMMGSHDELKSPSACLVVGKVVKGGTGLFELK 1712
Score = 57 (25.1 bits), Expect = 1.4e-210, Sum P(4) = 1.4e-210
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 827 VKDVVNQHNIVHKYSYDKKNHMWCKL 852
++ V H+ + Y YD + +WC++
Sbjct: 1498 IQAVRESHSFIEDYQYDTEESLWCQV 1523
>RGD|620824 [details] [associations]
symbol:Polr1a "polymerase (RNA) I polypeptide A" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=ISO;IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009303 "rRNA
transcription" evidence=IDA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 RGD:620824
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0009303 GO:GO:0005736 GO:GO:0003899
eggNOG:COG0086 KO:K02999 PANTHER:PTHR19376:SF11 CTD:25885
HOGENOM:HOG000205401 HOVERGEN:HBG017741 OrthoDB:EOG41VK23
EMBL:AF025425 IPI:IPI00199160 PIR:T14103 RefSeq:NP_113960.1
UniGene:Rn.24877 ProteinModelPortal:O54889 STRING:O54889
PhosphoSite:O54889 PRIDE:O54889 GeneID:83581 KEGG:rno:83581
UCSC:RGD:620824 InParanoid:O54889 NextBio:616111
ArrayExpress:O54889 Genevestigator:O54889 Uniprot:O54889
Length = 1716
Score = 1179 (420.1 bits), Expect = 7.9e-210, Sum P(4) = 7.9e-210
Identities = 246/465 (52%), Positives = 314/465 (67%)
Query: 2 DGWTQNASHFL-----KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA HF +AEA L QYLVPKDG PL+GLIQDH++SGA +++R F
Sbjct: 597 DGDEMNA-HFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFF 655
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR-HGE 115
TR +YM LVY+ L ++ PP I KP PLWTGKQV+ST++IN+ P+D + G+
Sbjct: 656 TREQYMELVYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDYTPLNLTGK 715
Query: 116 LLSGI---LDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWD 172
G + +K + ++ ++ V IR GELL G+LDK +GS+ YGLVH ++
Sbjct: 716 AKIGSKAWVKEKPRPVPDFD-PDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYE 774
Query: 173 THGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGTEAA 231
+G E + +L+CLA+LFT YLQ GFTLGV DILV+ D R +II ++ + G A
Sbjct: 775 IYGGETSGRVLTCLARLFTAYLQLYRGFTLGVEDILVKPNADVMRQRIIEESTQCGPRAV 834
Query: 232 CNALGLPLDTDPEIISSQLQEAYASIPQ--FRAQIDRQYKSLLDKVTNNINQVCLPEGLI 289
AL LP + I + Q+A Q F ID ++K ++ +N IN+ C+P GL
Sbjct: 835 RAALNLPEAASCDEIQGKWQDAIWRKDQRDFN-MIDMKFKEEVNHYSNEINKACMPFGLH 893
Query: 290 EPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPR 349
FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PYE +PR
Sbjct: 894 RQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPR 953
Query: 350 AGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMT 409
AGGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL + YD+T
Sbjct: 954 AGGFVTGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVIQYDLT 1013
Query: 410 VRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYK 454
VRDSD S++Q LYGEDGLD+ K Q+L KQF FL N + I K
Sbjct: 1014 VRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSK 1058
Score = 469 (170.2 bits), Expect = 7.9e-210, Sum P(4) = 7.9e-210
Identities = 102/261 (39%), Positives = 155/261 (59%)
Query: 489 RTKFTMDLLEQWYQLDDXXXXXXXXXXXXCPQPLISTFQPDAHFGSISENLADSVVKYTK 548
R+ T +L+ W++LD+ CP P +S ++PD HF S+SE + Y++
Sbjct: 1120 RSPETQQMLQMWHELDEQSRRKYQKRAAPCPDPSLSVWRPDIHFASVSETFEKKIDDYSQ 1179
Query: 549 ---GRTDASH------VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFH 599
+ + SH +D+ ++ K SL +PGE VG+LAAQSIGEPSTQMTLNTFH
Sbjct: 1180 EWAAQAEKSHNRSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFH 1239
Query: 600 FAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMA 659
FAGRG+MNVTLGIPRLREILM+A+ IKTP M +P + K ++ L K +TR+ +
Sbjct: 1240 FAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVF-NTKKALRRVKSLKKQLTRVCLG 1298
Query: 660 DVLEKVKIKEWLEISPEPHMN--YQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELE 717
+VL+KV I+E + + + Y+++F F+P Y+ + ++P I+ E +F K L
Sbjct: 1299 EVLQKVDIQESFCMGEKQNKFRVYELRFQFLPHAYYQQEKCLRPEDILHFMETRFFKLLM 1358
Query: 718 VAIAKR--AAQGLKNMNIEQS 736
AI K+ A +++N ++
Sbjct: 1359 EAIKKKNSKASAFRSVNTRRA 1379
Score = 396 (144.5 bits), Expect = 7.9e-210, Sum P(4) = 7.9e-210
Identities = 78/153 (50%), Positives = 111/153 (72%)
Query: 855 LPSNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIR 914
L + + E + +L T+GIN+ + +Y +LDL +LY NDIH +A+TYGIEAA RVI +
Sbjct: 1560 LNETINSKNEKEFVLNTEGINLPELFKYSEVLDLRRLYSNDIHAVANTYGIEAALRVIEK 1619
Query: 915 EVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQ 974
E+K+VFAVYGI VDPRHLSLVADYM G Y +NR GI+ + S +Q+MTFE + ++Q
Sbjct: 1620 EIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIQSSSSPLQQMTFETSFQFLKQ 1679
Query: 975 ASMQGREDSLRAPSARVMLGQECRQGTGLFQLR 1007
A+M G D L++PSA +++G+ + GTGLF+L+
Sbjct: 1680 ATMMGSHDELKSPSACLVVGKVVKGGTGLFELK 1712
Score = 57 (25.1 bits), Expect = 7.9e-210, Sum P(4) = 7.9e-210
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 827 VKDVVNQHNIVHKYSYDKKNHMWCKL 852
++ V H+ + Y YD + +WC++
Sbjct: 1498 IQAVRESHSFIEDYQYDTEESLWCQV 1523
>ZFIN|ZDB-GENE-030131-5286 [details] [associations]
symbol:polr1a "polymerase (RNA) I polypeptide A"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 ZFIN:ZDB-GENE-030131-5286
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861 EMBL:AL929267
EMBL:CU694378 IPI:IPI00934858 Ensembl:ENSDART00000114501
ArrayExpress:E7F710 Bgee:E7F710 Uniprot:E7F710
Length = 1710
Score = 1164 (414.8 bits), Expect = 1.6e-201, Sum P(3) = 1.6e-201
Identities = 242/465 (52%), Positives = 319/465 (68%)
Query: 2 DGWTQNA----SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLT 57
DG NA S +AEA L++ QYLVPKDG PL+GLIQDH++SG +++R F T
Sbjct: 595 DGDEMNAHFPQSELSRAEAYTLVSTDQQYLVPKDGKPLAGLIQDHMVSGTSMTIRGCFFT 654
Query: 58 RAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR-HGEL 116
R +Y LVY+ L ++ LPPT+ KP+ LWTGKQV+ST+++N+ P++ + + G+
Sbjct: 655 RDQYTALVYRGLTDKIGRVKLLPPTLIKPVLLWTGKQVVSTLLLNVIPENSIPLNLTGKA 714
Query: 117 -LSGILDKKQFGSTQYGLV-HAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTH 174
+ G K+ G V ++ ++ V IR GELL G+LDK +GS+ YGLVH ++ +
Sbjct: 715 KIPGKAWVKESPRPVPGYVPESMCESQVVIRQGELLMGVLDKAHYGSSAYGLVHCCYELY 774
Query: 175 GAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGTEAACN 233
G E + LLSCLA+LFT YLQ GFTLGV DILV+ K+ G++A
Sbjct: 775 GGETSGKLLSCLARLFTAYLQLYRGFTLGVEDILVKDGA---------KSVTCGSKALQA 825
Query: 234 ALGLPLDTDPEIISSQLQEAYASIPQ--FRAQIDRQYKSLLDKVTNNINQVCLPEGLIEP 291
A LP + + Q+A+ +I Q F +D ++K +++V NNIN+VC+P GL
Sbjct: 826 AFNLPASAEDTEARERWQDAHLNIDQRDFN-MVDLKFKEEVNQVNNNINKVCMPLGLHRS 884
Query: 292 FPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAG 351
FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PYE PR+G
Sbjct: 885 FPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMPSGKSLPCFQPYEPQPRSG 944
Query: 352 GFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVR 411
GFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V YD+TVR
Sbjct: 945 GFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVR 1004
Query: 412 DSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVI 456
DSD S++Q LYGEDGLD+ K Q+L +QF F++DN + I K +
Sbjct: 1005 DSDGSVVQFLYGEDGLDIPKTQFLQPRQFPFIKDNYEVIRKSKCL 1049
Score = 448 (162.8 bits), Expect = 1.6e-201, Sum P(3) = 1.6e-201
Identities = 100/262 (38%), Positives = 156/262 (59%)
Query: 489 RTKFTMDLLEQWYQLDDXXXXXXXXXXXXCPQPLISTFQPDAHFGSISENLADSVVK-YT 547
R + T+ L+E+W LD+ CP+P + ++PD FGS+SE DS+V+ Y
Sbjct: 1109 REEATLQLIERWRALDESGRMRYSKKTSHCPEPCLGLYRPDISFGSVSETF-DSIVESYL 1167
Query: 548 K---------GRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTF 598
++ + D+ +++ K +L +PGE VG++AAQSIGEPSTQMTLNTF
Sbjct: 1168 NQFNIKQEFSASSETTDADRLRNLLQLKWQRALCDPGEAVGLVAAQSIGEPSTQMTLNTF 1227
Query: 599 HFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITM 658
HFAGRG+MNVTLGIPRLREIL++A+ IKTP M IP + + L K+ L K +TR+ +
Sbjct: 1228 HFAGRGEMNVTLGIPRLREILLVASSNIKTPMMSIPVVMNKKAL-KQVKTLRKKITRVCL 1286
Query: 659 ADVLEKVKIKEWLEISPEPHMN---YQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKE 715
++VL KV + E + + + +++ F F+P Y+ + P +I+ + E+ F +
Sbjct: 1287 SEVLHKVNVIESFRMPKKETLKSRVFKITFHFLPPERYQQDKLLNPDEILHYMEQTFFRM 1346
Query: 716 LEVAIAKRAAQGLKNMNIEQSR 737
L AI K A+ L +++ ++R
Sbjct: 1347 LLEAIKKLTAK-LAAISLVETR 1367
Score = 394 (143.8 bits), Expect = 1.6e-201, Sum P(3) = 1.6e-201
Identities = 89/193 (46%), Positives = 127/193 (65%)
Query: 816 KIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNLFEEKESKHL-LKTDGI 874
K+ F D T+V VK Q+ ++ + K C L + + + SK + L T+GI
Sbjct: 1525 KVHF-DLTSVVVKQA--QNAVI----METKGITRCLL----NEVTRKDGSKEIMLNTEGI 1573
Query: 875 NVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSL 934
N++ + +Y +LDL +LY N++H MASTYGIE A RVI +E+K+VFAVYGIEVDPRHLSL
Sbjct: 1574 NIHEMFKYADILDLKRLYSNEVHAMASTYGIEVALRVIEKEIKDVFAVYGIEVDPRHLSL 1633
Query: 935 VADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLG 994
VADYM G Y +NR GI+ N S +Q+MTFE + ++QA+M G D L +PSA +++G
Sbjct: 1634 VADYMCFEGVYKPLNRFGIQSNSSPLQQMTFETSFKFLKQATMLGSYDKLSSPSACLVVG 1693
Query: 995 QECRQGTGLFQLR 1007
+ + GTG+F L+
Sbjct: 1694 KVVKGGTGIFDLK 1706
Score = 78 (32.5 bits), Expect = 3.5e-168, Sum P(3) = 3.5e-168
Identities = 28/118 (23%), Positives = 53/118 (44%)
Query: 824 NVFVKDVVNQHNIVHKYSYDKKNHMWCKL-LFLP---------SNLFEEKESKHLLKTDG 873
+V + V+ + Y YD K +WC+L L +P S + ++ ++ +++T G
Sbjct: 1489 SVRINSVLQLSAAIEDYKYDTKKGLWCELTLVMPITKVHFDLTSVVVKQAQNAVIMETKG 1548
Query: 874 INVNFISQYRHLLDLNKLYVN----DIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 927
I +++ ++ +N +IH M I R+ EV + + YGIEV
Sbjct: 1549 ITRCLLNEVTRKDGSKEIMLNTEGINIHEMFKYADILDLKRLYSNEVHAMASTYGIEV 1606
Score = 50 (22.7 bits), Expect = 3.9e-120, Sum P(2) = 3.9e-120
Identities = 19/77 (24%), Positives = 41/77 (53%)
Query: 823 TNVFVKDVVNQHNIVHKYSYDKKNHMWCKLL-----FLPSNLFEEKESKHLLKTDGINVN 877
T V + +V+++ N++ + KK + ++ FLP +++ + LL D I ++
Sbjct: 1282 TRVCLSEVLHKVNVIESFRMPKKETLKSRVFKITFHFLPPERYQQDK---LLNPDEI-LH 1337
Query: 878 FISQ--YRHLLD-LNKL 891
++ Q +R LL+ + KL
Sbjct: 1338 YMEQTFFRMLLEAIKKL 1354
Score = 45 (20.9 bits), Expect = 1.8e-73, Sum P(3) = 1.8e-73
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 403 TVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLT 436
T+H + +D LSL + D +TKR +LT
Sbjct: 228 TLHKKASEQDDTLSLEGLTLLSDDSQLTKRIFLT 261
Score = 41 (19.5 bits), Expect = 7.7e-30, Sum P(4) = 7.7e-30
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 623 TKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVL 662
TKAI+ E+ + PK+ + S+ +T+ D L
Sbjct: 354 TKAIEGTQTELEQSSEAPKVTEIDQSFLTSIQGVTLTDKL 393
Score = 37 (18.1 bits), Expect = 1.2e-72, Sum P(3) = 1.2e-72
Identities = 15/59 (25%), Positives = 24/59 (40%)
Query: 240 DTDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGL--IEPFPANN 296
D+D ++ E IP+ + RQ+ + D CL E L ++P A N
Sbjct: 1005 DSDGSVVQFLYGEDGLDIPKTQFLQPRQFPFIKDNYEVIRKSKCLDEVLAKMDPVAALN 1063
Score = 37 (18.1 bits), Expect = 7.7e-30, Sum P(4) = 7.7e-30
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 664 KVKIKEWLEISPEPHMNY 681
K+ K W++ SP P Y
Sbjct: 715 KIPGKAWVKESPRPVPGY 732
>WB|WBGene00012999 [details] [associations]
symbol:rpoa-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
HSSP:P04050 KO:K02999 OMA:CLLNETT PANTHER:PTHR19376:SF11
GeneTree:ENSGT00550000074861 EMBL:Z83219 EMBL:AL032648 EMBL:Z93392
PIR:A88355 PIR:T19606 RefSeq:NP_001022450.1
ProteinModelPortal:G5ED21 SMR:G5ED21 PRIDE:G5ED21
EnsemblMetazoa:Y48E1A.1a GeneID:175015 KEGG:cel:CELE_Y48E1A.1
CTD:175015 WormBase:Y48E1A.1a NextBio:886412 Uniprot:G5ED21
Length = 1737
Score = 1072 (382.4 bits), Expect = 2.1e-178, Sum P(4) = 2.1e-178
Identities = 220/447 (49%), Positives = 291/447 (65%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
SH + E + NV S +LVPKD +PL GLIQDHV+SG LS+RD FL + ++M+LV +
Sbjct: 640 SHIAQTEVREIANVGSNFLVPKDATPLLGLIQDHVVSGVLLSVRDRFLNKEDFMHLVLAS 699
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR-HGELLSGILD--KKQ 125
+ I PPTI P LWTGKQV++T++ N P K +I G+ + +
Sbjct: 700 FAQYSKRIEIPPPTILYPKRLWTGKQVITTIVKNCIPDGKPLINLDGKAKTPLSCWIVPG 759
Query: 126 FGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSC 185
F + Q+ + ++HV R GELL G+LDK FG+TQ+GL H ++ +G + LLSC
Sbjct: 760 FDAPQFDMS----ESHVVFRQGELLVGVLDKAHFGATQFGLAHCAFELYGHRCGVQLLSC 815
Query: 186 LAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEI 245
++LFT YLQ GFTLGV DILV ++ D KR + + ++R +G + A GLP P
Sbjct: 816 FSRLFTTYLQFHGFTLGVADILVVKDADGKRKEAVMESRTIGNQVVKTAFGLPDTATPAE 875
Query: 246 ISSQLQEAYASIPQFRA----QIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMV 301
I L Y + P+ + +D K + K + I + C+P GL+ FP N LQ M+
Sbjct: 876 IKRTLAATYCN-PRGQGTDVKMLDFGMKQGIAKYNDAITKSCVPTGLLRLFPQNALQLMI 934
Query: 302 ESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTG 361
+SGAKGS VN +QIS LGQIELEGKR A+ ++GRTLPSF ++ SPRAGG++D RF+TG
Sbjct: 935 QSGAKGSAVNAIQISGCLGQIELEGKRMAVTIAGRTLPSFRCFDPSPRAGGYIDQRFLTG 994
Query: 362 IQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVL 421
+ PQE FFH MAGREGLIDTAVKTSRSGYLQRC++KHLEG+ VHYD TVRD D S+IQ
Sbjct: 995 MNPQELFFHTMAGREGLIDTAVKTSRSGYLQRCIIKHLEGIRVHYDSTVRDHDGSVIQFR 1054
Query: 422 YGEDGLDVTKRQYLTDKQFSFLEDNIK 448
YGEDG+D TK +L K FLEDN++
Sbjct: 1055 YGEDGMDTTKATFLNKKTMPFLEDNLE 1081
Score = 360 (131.8 bits), Expect = 2.1e-178, Sum P(4) = 2.1e-178
Identities = 82/236 (34%), Positives = 130/236 (55%)
Query: 496 LLEQWYQLD-DXXXXXXXXXXXXCPQPLISTFQPDAHFGSISENLADSVVKYTKGRT--- 551
+L W++L + CP+ + F P G++ E + D + + R
Sbjct: 1147 ILAMWFELSLEEREQYARGIPKKCPEAVDERFNPTCKLGALPEKMLDEIEGFCTRRVKKV 1206
Query: 552 DASHVDK--FYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVT 609
D K +++K + SLA+PGENVG+LAAQSIGEPSTQMTLNTFHFAGRG+MNVT
Sbjct: 1207 DDEEPPKEVLKRTLYWKGMRSLADPGENVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVT 1266
Query: 610 LGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKE 669
LGIPRLREILM A+K+I TPS I + + + + + + + R+ + +L+ ++E
Sbjct: 1267 LGIPRLREILMTASKSIATPSASIAVIAGTSR--DRIDSIKRELDRVYLKQLLKNFSLEE 1324
Query: 670 WLEISPEPHMN-YQMKFCFIPAHMYR-DKTSVKPSKIIDHFERKFLKELEVAIAKR 723
+ ++ Y ++ + A +K S+I++ E++F+ + AI K+
Sbjct: 1325 KITLTQNQSCRRYHLRIDILAAEKRELGARHLKRSQIMEEIEKRFILRVAQAIKKK 1380
Score = 327 (120.2 bits), Expect = 2.1e-178, Sum P(4) = 2.1e-178
Identities = 65/148 (43%), Positives = 96/148 (64%)
Query: 861 EEKESKHL--LKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKN 918
E+K K + L+T G+N+ ++ +LD+N +Y ND++ + YG+EA ++ I E+ N
Sbjct: 1563 EQKNGKEMTILQTQGVNLAAFFKHADVLDVNSVYSNDLNLILENYGVEACSKAITTEMNN 1622
Query: 919 VFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQ 978
VFAVYGIEV RHLSL ADYMT +G NR + + S +QKMTFE + +R+A +
Sbjct: 1623 VFAVYGIEVSKRHLSLTADYMTFTGQIQPFNRGAMSSSSSPLQKMTFETTMAFLREALLH 1682
Query: 979 GREDSLRAPSARVMLGQECRQGTGLFQL 1006
G ED++ +PSAR+++G R GTG F L
Sbjct: 1683 GEEDNVNSPSARLVMGALPRGGTGSFDL 1710
Score = 58 (25.5 bits), Expect = 2.1e-178, Sum P(4) = 2.1e-178
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 837 VHKYSYDKKNHMWCKLLF-LP 856
+ Y+YD K++ WC+++F LP
Sbjct: 1507 ISSYTYDVKSNKWCEVVFELP 1527
Score = 47 (21.6 bits), Expect = 6.2e-25, Sum P(4) = 6.2e-25
Identities = 13/54 (24%), Positives = 27/54 (50%)
Query: 629 PSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQ 682
PS + L D P+ +K+ ++AK++ T ++ + K+ ++ MN Q
Sbjct: 539 PSGKKTMLGDKPEEKKRRMQMAKTLNAATTENLRQTPKVLRHMKNGDMIMMNRQ 592
Score = 42 (19.8 bits), Expect = 1.9e-57, Sum P(4) = 1.9e-57
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 326 GKRPAMMVSGRTLPSFLPYEV 346
G+ P M S L S+ P+E+
Sbjct: 8 GEEPYMQFSNFKLRSYFPHEI 28
Score = 37 (18.1 bits), Expect = 2.0e-140, Sum P(3) = 2.0e-140
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 843 DKKNHMWCKLLFLPSNLFEEKE 864
D++ + CKL LP + +E E
Sbjct: 1175 DERFNPTCKLGALPEKMLDEIE 1196
>UNIPROTKB|F1NJE0 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF04998 Pfam:PF05000 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 GO:GO:0003899 PANTHER:PTHR19376:SF11
GeneTree:ENSGT00550000074861 EMBL:AADN02014782 EMBL:AADN02014783
IPI:IPI00819994 Ensembl:ENSGALT00000037150 OMA:QKKMARV
ArrayExpress:F1NJE0 Uniprot:F1NJE0
Length = 917
Score = 763 (273.6 bits), Expect = 6.2e-177, Sum P(4) = 6.2e-177
Identities = 149/252 (59%), Positives = 187/252 (74%)
Query: 203 VRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQEAYASIPQ--F 260
+ DILV+ E DRKR KII K+ + G E AL LP + E + + Q+A+ Q F
Sbjct: 1 IEDILVKPEADRKRHKIIKKSSQCGIEVVRAALNLPETSSCEDVQGKWQDAHLCKDQRDF 60
Query: 261 RAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLG 320
+D ++K ++ N +N+VC+P GL FP NNLQ MV+SGAKGSTVNT+QISCLLG
Sbjct: 61 N-MVDLKFKEEVNNYNNEVNKVCMPFGLHRSFPENNLQLMVQSGAKGSTVNTVQISCLLG 119
Query: 321 QIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLID 380
QIELEG+RP +M SG++LP F PY+ SP +GGFV GRF+TGI+P EFFFHCMAGREGL+D
Sbjct: 120 QIELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVTGRFLTGIKPSEFFFHCMAGREGLVD 179
Query: 381 TAVKTSRSGYLQR--CLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDK 438
TAVKTSRSGYLQR C++KHLEGL V YD+TVRDSD S++Q LYGEDGLD+ K Q+L +
Sbjct: 180 TAVKTSRSGYLQRNRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPE 239
Query: 439 QFSFLEDNIKWI 450
QF F+ DN + I
Sbjct: 240 QFPFIADNYEVI 251
Score = 526 (190.2 bits), Expect = 6.2e-177, Sum P(4) = 6.2e-177
Identities = 112/249 (44%), Positives = 153/249 (61%)
Query: 489 RTKFTMDLLEQWYQLDDXXXXXXXXXXXXCPQPLISTFQPDAHFGSISENLADSVVKYTK 548
R T+ LL+ WY+LD+ CP P ++ ++PD++F S+SE V Y
Sbjct: 317 RDPATLQLLKMWYELDEKKRRKYLKKANKCPDPSLAVWRPDSYFASVSETFESGVEDYIN 376
Query: 549 GRTDASH---------VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFH 599
R S D+ D+++ K SL +PGE VG+LAAQSIGEPSTQMTLNTFH
Sbjct: 377 KRECKSRGGCMQPALSSDRLKDLLYLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFH 436
Query: 600 FAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMA 659
FAGRG+MNVTLGIPRLREILM+A+ IKTP M +P L K KK +L K +TR+ +A
Sbjct: 437 FAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVL-GTKKAHKKVKQLKKQLTRVCLA 495
Query: 660 DVLEKVKIKEWLEISPEP--HMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELE 717
+VL+KV+++E L + + H Y++KFCF+P YR++ VKP I+ E +F K
Sbjct: 496 EVLQKVELEESLHLKNKENSHRLYKIKFCFLPYEYYREEKCVKPRDILRFMETRFFKIFL 555
Query: 718 VAIAKRAAQ 726
AI +R A+
Sbjct: 556 EAIRRRRAK 564
Score = 404 (147.3 bits), Expect = 6.2e-177, Sum P(4) = 6.2e-177
Identities = 80/147 (54%), Positives = 109/147 (74%)
Query: 861 EEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 920
E+ E + +L T+GIN+ + +Y +LDLN+LY NDIH MA YGIE+A RV+I+E+K+VF
Sbjct: 767 EKGEKELILHTEGINLAELFRYSDILDLNRLYSNDIHAMAKNYGIESALRVVIKEIKDVF 826
Query: 921 AVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGR 980
AVYGI VDPRHLSLVADYM G Y MNR GI+ + S +Q+MTFE + +++A+M G
Sbjct: 827 AVYGIVVDPRHLSLVADYMCFEGVYKPMNRFGIQSSSSPLQQMTFETSYKFLKEATMMGA 886
Query: 981 EDSLRAPSARVMLGQECRQGTGLFQLR 1007
D LR+PSA ++LG+ + GTGLF L+
Sbjct: 887 HDELRSPSACLVLGKVVKGGTGLFDLK 913
Score = 75 (31.5 bits), Expect = 6.2e-177, Sum P(4) = 6.2e-177
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 822 STNVFVKDVVNQHNIVHKYSYDKKNHMWCKL-LFLP 856
S V V V+N H + Y++D +N +WC++ L LP
Sbjct: 694 SAEVRVNAVLNSHPSIQDYTFDTENELWCEVSLTLP 729
Score = 50 (22.7 bits), Expect = 6.8e-127, Sum P(4) = 6.8e-127
Identities = 10/40 (25%), Positives = 23/40 (57%)
Query: 632 EIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVK-IKEW 670
+ PF+ D ++ +K N L +++ R+ ++ K I++W
Sbjct: 240 QFPFIADNYEVIQKTNHLNEALARMESHQAKQQFKAIRKW 279
>POMBASE|SPBC4C3.05c [details] [associations]
symbol:nuc1 "DNA-directed RNA polymerase I complex large
subunit Nuc1" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IGI] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IGI] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006360 "transcription from RNA polymerase I
promoter" evidence=ISO] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0007000 "nucleolus organization" evidence=IMP]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0034503 "protein
localization to nucleolar rDNA repeats" evidence=IMP]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 PomBase:SPBC4C3.05c
GO:GO:0005829 GO:GO:0046872 GO:GO:0003677 EMBL:CU329671
GO:GO:0008270 GenomeReviews:CU329671_GR GO:GO:0006406
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0034503 GO:GO:0006360
GO:GO:0007000 GO:GO:0005736 GO:GO:0003899 eggNOG:COG0086 KO:K02999
OMA:CLLNETT PANTHER:PTHR19376:SF11 HOGENOM:HOG000205401 EMBL:X14783
EMBL:M37411 PIR:JS0080 RefSeq:NP_596300.1 ProteinModelPortal:P15398
STRING:P15398 EnsemblFungi:SPBC4C3.05c.1 GeneID:2540873
KEGG:spo:SPBC4C3.05c OrthoDB:EOG432464 NextBio:20801989
Uniprot:P15398
Length = 1689
Score = 1045 (372.9 bits), Expect = 6.3e-167, Sum P(3) = 6.3e-167
Identities = 223/448 (49%), Positives = 297/448 (66%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
++EA F+ N SQYLVP G PL GLIQDHV+ G L+ +DTF TR EY L++QAL
Sbjct: 660 RSEAQFIANTDSQYLVPTSGDPLRGLIQDHVVMGVWLTCKDTFYTRDEYQQLLFQALKPD 719
Query: 73 NT----EIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGS 128
T I+TLPP I +P WTGKQ++S+V++NL P D R G L+ L K
Sbjct: 720 ETGMYGRIKTLPPAIQRPGIYWTGKQIISSVLLNLKPSD----RPG--LN--LKSKAKVP 771
Query: 129 TQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAK 188
+Y + + V GELL GILDK FG++ +GLVH+V + +G + A LLS L++
Sbjct: 772 GKYWSPDSE-EGSVLFDDGELLCGILDKSSFGASAFGLVHSVHELYGPDIAGRLLSVLSR 830
Query: 189 LFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISS 248
LFT Y Q GFT + D+ + ++ D R +++ + G EAA +GL D+ ++++
Sbjct: 831 LFTAYAQMRGFTCRMDDLRLDEQGDNWRRQLLENGKSFGLEAASEYVGLSTDSPIALLNA 890
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGS 308
L+E Y + + +D K ++ +T++I C+P+GL+ FP N++Q M SGAKGS
Sbjct: 891 NLEEVYRDDEKLQG-LDAAMKGKMNGLTSSIINKCIPDGLLTKFPYNHMQTMTVSGAKGS 949
Query: 309 TVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFF 368
VN QISCLLGQ ELEG+R +MVSG++LPSF+PYE S ++GGF+ RF+TGI PQE++
Sbjct: 950 NVNVSQISCLLGQQELEGRRVPLMVSGKSLPSFVPYETSAKSGGFIASRFLTGIAPQEYY 1009
Query: 369 FHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
FHCMAGREGLIDTAVKTSRSGYLQRCL+KHLEGL V YD TVRDSD S++Q YGED LD
Sbjct: 1010 FHCMAGREGLIDTAVKTSRSGYLQRCLMKHLEGLCVQYDHTVRDSDGSIVQFHYGEDSLD 1069
Query: 429 VTKRQYLTDKQFSFLEDNIK-WICSYKV 455
VTK+++LT QF F N K I YKV
Sbjct: 1070 VTKQKHLT--QFEFSAKNYKSLIQKYKV 1095
Score = 331 (121.6 bits), Expect = 6.3e-167, Sum P(3) = 6.3e-167
Identities = 86/222 (38%), Positives = 128/222 (57%)
Query: 521 PLISTFQPDAHFGSISENLADSVVKYTKGRTD---ASHVD-KFYDMIF----YKNLL--- 569
P++ + P + GS+SE +V +YT+ D AS + K D + +K L+
Sbjct: 1123 PVLDKYPPSRYLGSVSEKFQRAVDEYTQKNPDKLIASKKESKLDDSLLNESKFKALMQLR 1182
Query: 570 ---SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAI 626
SL +PGE+VGVLA+QSIGEPSTQMTLNTFHFAG G NVTLGIPRLREI+M A+ I
Sbjct: 1183 YQQSLVDPGESVGVLASQSIGEPSTQMTLNTFHFAGFGAKNVTLGIPRLREIIMTASANI 1242
Query: 627 KTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWL--EISPEPHMNYQMK 684
+TP+M + L D +K+A+ K + ++ +++V+ +V++ E + + S E Y ++
Sbjct: 1243 QTPTMTLR-LNDGVS-DKRASAFCKEVNKLVLSEVVRQVRVTEKISGQGSDEQSKTYAIR 1300
Query: 685 FCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQ 726
Y+D+ V +I F +FLK L I A+
Sbjct: 1301 LDLYSRDEYQDEYGVLQEEIESTFSNRFLKILNRIIKSYLAK 1342
Score = 311 (114.5 bits), Expect = 6.3e-167, Sum P(3) = 6.3e-167
Identities = 61/136 (44%), Positives = 87/136 (63%)
Query: 871 TDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 930
T+G+N+ I ++ + + +N +Y NDI + YG+EAA I+ EV +VF VYGI VDPR
Sbjct: 1544 TEGVNLKAIWEFYNEISMNDIYTNDIAAILRIYGVEAARNAIVHEVSSVFGVYGIAVDPR 1603
Query: 931 HLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSAR 990
HLSL+ADYMT G Y A NR GI N S KM+FE + +A+++G D L PS+R
Sbjct: 1604 HLSLIADYMTFEGGYKAFNRMGIEYNTSPFAKMSFETTCHFLTEAALRGDVDDLSNPSSR 1663
Query: 991 VMLGQECRQGTGLFQL 1006
+++G+ GTG F +
Sbjct: 1664 LVVGRVGNFGTGSFDI 1679
Score = 45 (20.9 bits), Expect = 7.2e-52, Sum P(3) = 7.2e-52
Identities = 25/71 (35%), Positives = 30/71 (42%)
Query: 206 ILVRQERDRKRTKIINKARRLGTE-------AACNALGLPLDTDPEIISSQLQEAYA-SI 257
IL RQ K + + +KAR L E A CN+ D D E+ Q A S
Sbjct: 604 ILNRQPTLHKPSMMAHKARILPGEKTIRMHYANCNSYNADFDGD-EMNMHFPQSTNARSE 662
Query: 258 PQFRAQIDRQY 268
QF A D QY
Sbjct: 663 AQFIANTDSQY 673
Score = 40 (19.1 bits), Expect = 2.4e-51, Sum P(3) = 2.4e-51
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 291 PFPANNLQFMVESGAKGSTV 310
P NLQFM ++G S V
Sbjct: 250 PLSGKNLQFMEQTGKIRSDV 269
Score = 37 (18.1 bits), Expect = 9.9e-21, Sum P(3) = 9.9e-21
Identities = 18/53 (33%), Positives = 23/53 (43%)
Query: 580 VLAAQS--IGEP-STQMTLNT----FHFAGRGDMNVTLGIPRLREILMMATKA 625
+L QS I P S +NT + GDM + P L + MMA KA
Sbjct: 569 LLTPQSNLISSPYSYSRLINTNKKVYRHVRNGDMLILNRQPTLHKPSMMAHKA 621
>SGD|S000005868 [details] [associations]
symbol:RPA190 "RNA polymerase I largest subunit A190"
species:4932 "Saccharomyces cerevisiae" [GO:0005634 "nucleus"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IDA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IMP;IDA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0042790 "transcription of nuclear large rRNA transcript from
RNA polymerase I promoter" evidence=IGI;IMP] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 SGD:S000005868 EMBL:BK006948 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:X95720 GO:GO:0005736 GO:GO:0003899 GO:GO:0042790
eggNOG:COG0086 KO:K02999 OMA:CLLNETT PANTHER:PTHR19376:SF11
HOGENOM:HOG000205401 GeneTree:ENSGT00550000074861 OrthoDB:EOG432464
EMBL:J03530 EMBL:Z75249 PIR:S67250 RefSeq:NP_014986.3
RefSeq:NP_620389.3 ProteinModelPortal:P10964 SMR:P10964
DIP:DIP-999N IntAct:P10964 MINT:MINT-613626 STRING:P10964
PaxDb:P10964 PeptideAtlas:P10964 EnsemblFungi:YOR341W GeneID:854519
GeneID:854523 KEGG:sce:YOR341W KEGG:sce:YOR343W-B CYGD:YOR341w
NextBio:976888 Genevestigator:P10964 GermOnline:YOR341W
Uniprot:P10964
Length = 1664
Score = 981 (350.4 bits), Expect = 5.8e-163, Sum P(4) = 5.8e-163
Identities = 203/442 (45%), Positives = 283/442 (64%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALC-- 70
+AEA L N SQYL P GSP+ GLIQDH+ +G L+ +D+F TR +Y +Y +
Sbjct: 644 RAEALNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQYQQYIYGCIRPE 703
Query: 71 ---ILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
++I TLPPTI+KP PLWTGKQ+++TV++N+TP D I ++ K +
Sbjct: 704 DGHTTRSKIVTLPPTIFKPYPLWTGKQIITTVLLNVTPPDMPGIN-------LISKNKIK 756
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
+ +G + V + G LL GILDK Q+G+++YG+VH++ + +G E A +LS L
Sbjct: 757 NEYWG--KGSLENEVLFKDGALLCGILDKSQYGASKYGIVHSLHEVYGPEVAAKVLSVLG 814
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDT---DPE 244
+LFT Y+ FT G+ D+ + E ++ RT I+ + G EAA L DT DPE
Sbjct: 815 RLFTNYITATAFTCGMDDLRLTAEGNKWRTDILKTSVDTGREAAAEVTNLDKDTPADDPE 874
Query: 245 IISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESG 304
++ +LQE + +D S ++ +T+ + C+P+G ++ FP N++Q M SG
Sbjct: 875 LLK-RLQEILRDNNK-SGILDAVTSSKVNAITSQVVSKCVPDGTMKKFPCNSMQAMALSG 932
Query: 305 AKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQP 364
AKGS VN QI CLLGQ LEG+R +MVSG+TLPSF PYE AGG+V GRF +GI+P
Sbjct: 933 AKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPYETDAMAGGYVKGRFYSGIKP 992
Query: 365 QEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGE 424
QE++FHCMAGREGLIDTAVKTSRSGYLQRCL K LEG+ V YD ++RD+D +L+Q +YG
Sbjct: 993 QEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSIRDADGTLVQFMYGG 1052
Query: 425 DGLDVTKRQYLTDKQFSFLEDN 446
D +D+TK ++T QF F DN
Sbjct: 1053 DAIDITKESHMT--QFEFCLDN 1072
Score = 359 (131.4 bits), Expect = 5.8e-163, Sum P(4) = 5.8e-163
Identities = 81/212 (38%), Positives = 125/212 (58%)
Query: 521 PLISTFQPDAHFGSISENLADSVVKYTKGRT------DASHVDKFYDMIFYKNLLSLANP 574
P+++ + P + GS+SEN D + + + D + KF ++ K + SL NP
Sbjct: 1122 PVLAKYNPAKYLGSVSENFQDKLESFLDKNSKLFKSSDGVNEKKFRALMQLKYMRSLINP 1181
Query: 575 GENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIP 634
GE VG++A+QS+GEPSTQMTLNTFHFAG G NVTLGIPRLREI+M A+ AIKTP M +P
Sbjct: 1182 GEAVGIIASQSVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTASAAIKTPQMTLP 1241
Query: 635 FLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMN----YQMKFCFIPA 690
D+ +++A+ KS++++ +++V++KV + E S N Y + F
Sbjct: 1242 IWNDVS--DEQADTFCKSISKVLLSEVIDKVIVTETTGTSNTAGGNAARSYVIHMRFFDN 1299
Query: 691 HMYRDKTSVKPSKIIDHFERKFLKELEVAIAK 722
+ Y ++ V ++ + +F+ LE AI K
Sbjct: 1300 NEYSEEYDVSKEELQNVISNQFIHLLEAAIVK 1331
Score = 275 (101.9 bits), Expect = 5.8e-163, Sum P(4) = 5.8e-163
Identities = 53/146 (36%), Positives = 85/146 (58%)
Query: 861 EEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 920
E + K +L T+G+N + +D++ + ND+ + TYG+EAA I+ E+ NVF
Sbjct: 1511 EPENGKRVLVTEGVNFQAMWDQEAFIDVDGITSNDVAAVLKTYGVEAARNTIVNEINNVF 1570
Query: 921 AVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGR 980
+ Y I V RHL L+AD MT GTY+A NR G+ + S KM++E + + +A +
Sbjct: 1571 SRYAISVSFRHLDLIADMMTRQGTYLAFNRQGMETSTSSFMKMSYETTCQFLTKAVLDNE 1630
Query: 981 EDSLRAPSARVMLGQECRQGTGLFQL 1006
+ L +PSAR+++G+ GTG F +
Sbjct: 1631 REQLDSPSARIVVGKLNNVGTGSFDV 1656
Score = 58 (25.5 bits), Expect = 5.8e-163, Sum P(4) = 5.8e-163
Identities = 9/39 (23%), Positives = 22/39 (56%)
Query: 817 IEFRDSTNVFVKD----VVNQHNIVHKYSYDKKNHMWCK 851
+E ++ N +D +++ H + KY++D ++ WC+
Sbjct: 1433 VEANNNMNKVQRDRQSAIISHHRFITKYNFDDESGKWCE 1471
Score = 44 (20.5 bits), Expect = 2.2e-99, Sum P(2) = 2.2e-99
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 860 FEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRV 911
F +K SK +DG+N ++R L+ L Y+ + GI A+ V
Sbjct: 1147 FLDKNSKLFKSSDGVNEK---KFRALMQLK--YMRSLINPGEAVGIIASQSV 1193
>CGD|CAL0001661 [details] [associations]
symbol:RPA190 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0005736 "DNA-directed RNA polymerase I
complex" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0007000 "nucleolus organization" evidence=IEA]
[GO:0042790 "transcription of nuclear large rRNA transcript from
RNA polymerase I promoter" evidence=IEA] [GO:0034503 "protein
localization to nucleolar rDNA repeats" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 CGD:CAL0001661
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:AACQ01000244
EMBL:AACQ01000240 GO:GO:0003899 eggNOG:COG0086 KO:K02999
PANTHER:PTHR19376:SF11 RefSeq:XP_710723.1 RefSeq:XP_710761.1
ProteinModelPortal:Q59LW3 STRING:Q59LW3 GeneID:3647643
GeneID:3647677 KEGG:cal:CaO19.1839 KEGG:cal:CaO19.9397
Uniprot:Q59LW3
Length = 1665
Score = 915 (327.2 bits), Expect = 4.4e-155, Sum P(4) = 4.4e-155
Identities = 198/442 (44%), Positives = 277/442 (62%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALC-- 70
+AEA L N +QYL P GSPL GLIQDH+ +G L+ +DTF R Y L+Y +
Sbjct: 626 RAEALNLANTDNQYLTPTSGSPLRGLIQDHISAGVWLTNKDTFFNRETYQQLIYGCIRPE 685
Query: 71 ---ILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
I T+PP I+KP LWTGKQV++TV++N+ P D V G ++ K +
Sbjct: 686 DGHTSKNRIVTVPPAIYKPEMLWTGKQVITTVLLNIKP-DNV---PGV---NLISKNKIK 738
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLA 187
S + + + V ++GELLSGILDK Q+G++Q+G+VH++ + +G A LS L
Sbjct: 739 SDYWS--ESSTENEVIFKNGELLSGILDKSQYGASQFGIVHSLHEVYGPTVAGKALSVLG 796
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDT---DPE 244
+LFT Y+ FT G+ D+ + E + R I+ ++ +G AA L DT + E
Sbjct: 797 RLFTNYIMMTAFTCGMDDLRLTDEGNTWRKDILKQSVDIGRVAATEVTNLDEDTKNNNKE 856
Query: 245 IISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESG 304
++ +L+E + +D +S ++ +T+ + C+P+G ++ FP N++Q M SG
Sbjct: 857 LLR-RLEEILRDDNKLGI-LDALTQSKVNAITSQVVSKCVPDGTMKRFPYNSMQAMALSG 914
Query: 305 AKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQP 364
AKGS VN QI CLLGQ LEG+R +MVSG+TLPSF P+E RAGG++ RF +GI+P
Sbjct: 915 AKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPFETDARAGGYIKQRFYSGIRP 974
Query: 365 QEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGE 424
QE++FHCMAGREGLIDTAVKTSRSGYLQRCL K LEG+ V YD +VRD+D +LIQ LYG
Sbjct: 975 QEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSVRDADGTLIQFLYGG 1034
Query: 425 DGLDVTKRQYLTDKQFSFLEDN 446
D +D TK+ ++ QF F DN
Sbjct: 1035 DAVDTTKQSHMN--QFKFCVDN 1054
Score = 347 (127.2 bits), Expect = 4.4e-155, Sum P(4) = 4.4e-155
Identities = 81/224 (36%), Positives = 123/224 (54%)
Query: 521 PLISTFQPDAHFGSISENLADSVVKYT--------KGRTDASHVDKFYDMIF-----YKN 567
P+++ + P + GS+SE + + Y + + +A K + F K
Sbjct: 1104 PVLNVYNPAKYLGSVSEKFQEKLDTYVSKNPTIFAQSKEEAKSTGKITEKKFRALMQLKY 1163
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
+ SL NPGE VG++A+QSIGEPSTQMTLNTFHFAG G NVTLGIPR+REI+M A+ +IK
Sbjct: 1164 MRSLINPGEAVGIIASQSIGEPSTQMTLNTFHFAGHGAANVTLGIPRMREIIMTASASIK 1223
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWL--EISPEPHMNYQMKF 685
TP M +P L D+ +++A+ KS+ R+ M++ ++KV + E ++ +Y +
Sbjct: 1224 TPQMTLPILADVN--DEQADAFCKSVARVVMSEFVDKVVVTETTSQDVDGSNSRSYVIGL 1281
Query: 686 CFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLK 729
F Y + + ++ D KFL LE I K + K
Sbjct: 1282 KFYTKEEYETEYDISQEQLEDVITSKFLHALEGQIVKEVKKQKK 1325
Score = 287 (106.1 bits), Expect = 4.4e-155, Sum P(4) = 4.4e-155
Identities = 54/146 (36%), Positives = 86/146 (58%)
Query: 861 EEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 920
+ K K +L T+G+N + +++N + ND++ + TYG+EAA I+ E+ VF
Sbjct: 1513 DAKTGKRILTTEGVNFRAMWDQDDFINVNGITSNDVYAVLKTYGVEAARNTIVNEIYRVF 1572
Query: 921 AVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGR 980
YGI V RHL L+AD MT GTY+A NR GI + S KM++E + + +A + G
Sbjct: 1573 DTYGISVSSRHLDLIADMMTREGTYLAFNRQGIDSSTSAFMKMSYETTCQFLTKAVLDGD 1632
Query: 981 EDSLRAPSARVMLGQECRQGTGLFQL 1006
+ L +PSA++++G+ GTG F +
Sbjct: 1633 REELESPSAKIVMGKLSNVGTGSFDV 1658
Score = 53 (23.7 bits), Expect = 4.4e-155, Sum P(4) = 4.4e-155
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 816 KIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCK 851
K E S +V+ HN+V ++++D + WC+
Sbjct: 1435 KSELSRSAKDRQSEVIASHNMVTQFNFDDELGEWCE 1470
Score = 52 (23.4 bits), Expect = 4.3e-124, Sum P(4) = 4.3e-124
Identities = 22/84 (26%), Positives = 41/84 (48%)
Query: 522 LISTFQPDAHFGSISENLADS----VVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGEN 577
L++ + P +I +LA S V K K + D H D+ +I Y +L++ NP +
Sbjct: 1058 LLTKYNPGDMTENIDTDLALSYSKKVRKSLKKQKDVPHYDQ---VIKYDPVLNVYNPAKY 1114
Query: 578 VGVLAAQSIGEPSTQMTLNTFHFA 601
+G ++ + + T ++ N FA
Sbjct: 1115 LGSVSEKFQEKLDTYVSKNPTIFA 1138
Score = 43 (20.2 bits), Expect = 4.8e-123, Sum P(4) = 4.8e-123
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 641 KLEKKANRLAKSMTRITMADVLEKVKIKEWLEIS----PEP 677
KLE N K + + D+L KV ++E I PEP
Sbjct: 1472 KLELNGNETQKLLMVNIVEDLLRKVVVREIPHIGRCIRPEP 1512
Score = 40 (19.1 bits), Expect = 8.6e-92, Sum P(2) = 8.6e-92
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 584 QSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRL 615
+ + PS ++ + G G +V +PRL
Sbjct: 1634 EELESPSAKIVMGKLSNVGTGSFDVFAQMPRL 1665
>DICTYBASE|DDB_G0275759 [details] [associations]
symbol:rpa1 "RNA polymerase I, largest subunit"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006360 "transcription
from RNA polymerase I promoter" evidence=ISS] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
dictyBase:DDB_G0275759 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GenomeReviews:CM000151_GR EMBL:AAFI02000013 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0006360 GO:GO:0005736 GO:GO:0003899
eggNOG:COG0086 RefSeq:XP_643519.1 HSSP:P04050
ProteinModelPortal:Q86H36 STRING:Q86H36 PRIDE:Q86H36
EnsemblProtists:DDB0216292 GeneID:8620100 KEGG:ddi:DDB_G0275759
KO:K02999 OMA:CLLNETT ProtClustDB:CLSZ2497252
PANTHER:PTHR19376:SF11 Uniprot:Q86H36
Length = 1615
Score = 947 (338.4 bits), Expect = 4.0e-154, Sum P(3) = 4.0e-154
Identities = 204/424 (48%), Positives = 277/424 (65%)
Query: 25 QYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCILNTE--IRTLPPT 82
QYLVP++G+PL GLIQDH+++G L+ RDT T+A++ ++Y + +NT+ I T PP
Sbjct: 622 QYLVPRNGAPLRGLIQDHILTGVLLTKRDTLFTKADFQAILYASCWSVNTKHPIVTPPPC 681
Query: 83 IWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYGLVHAVWDTHV 142
I KP+PLW+GKQ++S + LT + + E S I K +G+ GL D+HV
Sbjct: 682 ILKPVPLWSGKQLISAALNQLTIGRAPL--NLEAPSKI-PTKMWGTK--GL-EITRDSHV 735
Query: 143 TIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLG 202
IR E+++GILDK FG++ YGLVH ++ + + A SLL+ L ++FT YLQ GFT G
Sbjct: 736 IIRQNEMVAGILDKGHFGASSYGLVHTCYELYDPDVAGSLLTLLGRMFTNYLQSRGFTCG 795
Query: 203 VRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQEAYASIPQFRA 262
V D+L++ + ++ R + + KA G A L D + +A S + A
Sbjct: 796 VDDLLMKNKEEKFRVETLKKANEEGYTVAAKFADLS-KYDEQKARDFFSKALQSEREV-A 853
Query: 263 QIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQI 322
++D K L++ T+ + +P G +PFP NN M SGAKGS VN Q+SCLLGQ
Sbjct: 854 RLDGLLKKGLNQYTSKVIDTLIPGGQQKPFPKNNFSLMTVSGAKGSVVNFSQVSCLLGQQ 913
Query: 323 ELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTA 382
ELEGKR MVSG+TLPSF Y+ S RAGGFV RF+TG++PQ++FFHCMAGREGLIDTA
Sbjct: 914 ELEGKRVPRMVSGKTLPSFQAYDASARAGGFVMDRFLTGVRPQDYFFHCMAGREGLIDTA 973
Query: 383 VKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSF 442
VKTSRSGYLQRCL+KHLEGL+V YD TVR+SD S+IQ YGED L++ K YLT +F
Sbjct: 974 VKTSRSGYLQRCLIKHLEGLSVQYDNTVRESDGSVIQFNYGEDSLEIGKTPYLT--KFPI 1031
Query: 443 LEDN 446
+ +N
Sbjct: 1032 IAEN 1035
Score = 314 (115.6 bits), Expect = 4.0e-154, Sum P(3) = 4.0e-154
Identities = 59/143 (41%), Positives = 94/143 (65%)
Query: 864 ESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
++ + ++++G+N++ I + R L ++++Y NDI+ + YG+EA + + E+ NVFA Y
Sbjct: 1468 KTHYSIQSEGVNLSEIFELRDKLKIDEIYTNDIYAILQKYGVEACRQAVTSEISNVFAAY 1527
Query: 924 GIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDS 983
GI VD RHL L+ DYMT G Y A+NR GI N S QKM+FE + +AS+ G D+
Sbjct: 1528 GISVDKRHLILLGDYMTFEGGYRALNRIGIENNTSPFQKMSFETTFSFLSKASLMGDYDT 1587
Query: 984 LRAPSARVMLGQECRQGTGLFQL 1006
+ +PS+R++LGQ + GTG F +
Sbjct: 1588 VTSPSSRIVLGQIVKNGTGSFTI 1610
Score = 307 (113.1 bits), Expect = 4.0e-154, Sum P(3) = 4.0e-154
Identities = 70/181 (38%), Positives = 111/181 (61%)
Query: 521 PLISTFQPDAHFGSISENLADSVVKYTKG------RTDASHVDKFYDMIFYKNLL----- 569
P++S F P + G +SE+ + + Y + +T ++ K + F +NL+
Sbjct: 1072 PVMSKFNPSSDLGCVSESFMNQLNHYIESNPQKLIKTTSNRDGKINEKDF-RNLMYLYYS 1130
Query: 570 -SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKT 628
S+ +PGE+VG+L AQSIGEPSTQMTLNTFH AGRG+ NVTLGIPRLRE++M AT T
Sbjct: 1131 RSMVSPGESVGLLCAQSIGEPSTQMTLNTFHLAGRGEANVTLGIPRLRELIMTATTKPIT 1190
Query: 629 PSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPHMNYQMKFCFI 688
P ME K+E + ++AK + + ++D+++ + ++E+ + + + NY ++ FI
Sbjct: 1191 PLMEFQINDSTNKVETE--KMAKYLEILKLSDIIKDITVQEYFQ---DTNRNYDIEIEFI 1245
Query: 689 P 689
P
Sbjct: 1246 P 1246
Score = 46 (21.3 bits), Expect = 1.7e-97, Sum P(3) = 1.7e-97
Identities = 14/64 (21%), Positives = 33/64 (51%)
Query: 862 EKESKHL--LKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNV 919
EK +K+L LK I + I+ + D N+ Y +I ++ + + + +R+ +++ +
Sbjct: 1207 EKMAKYLEILKLSDI-IKDITVQEYFQDTNRNYDIEIEFIPTLQQVLSLHRIKEKQLNKL 1265
Query: 920 FAVY 923
F +
Sbjct: 1266 FGEF 1269
Score = 37 (18.1 bits), Expect = 1.1e-125, Sum P(3) = 1.1e-125
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLE----ISPEPHMNYQM-K 684
S+EI P + K A ++ M ++E++K +E +E I +P ++ M K
Sbjct: 1017 SLEIGKTPYLTKFPIIAENYELFKSQFPMEQLIEQLKNQEVVEYNRSIKTQPELDPVMSK 1076
Query: 685 F 685
F
Sbjct: 1077 F 1077
Score = 37 (18.1 bits), Expect = 7.8e-49, Sum P(3) = 7.8e-49
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 273 DKVTNNINQVCLPEGLIEPFPANNLQFMV-ESGA 305
D++ + Q L I ANN Q++V +GA
Sbjct: 597 DEMNIHFPQSLLASAEIREICANNYQYLVPRNGA 630
>TAIR|locus:2076661 [details] [associations]
symbol:NRPA1 "nuclear RNA polymerase A1" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;ISS;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA] [GO:0006354
"DNA-dependent transcription, elongation" evidence=RCA] [GO:0006406
"mRNA export from nucleus" evidence=RCA] [GO:0006606 "protein
import into nucleus" evidence=RCA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0009506 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
EMBL:AL049660 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 HSSP:P04050 KO:K02999 OMA:CLLNETT
PANTHER:PTHR19376:SF11 HOGENOM:HOG000205401 IPI:IPI00546513
PIR:T06754 RefSeq:NP_191325.1 UniGene:At.50286
ProteinModelPortal:Q9SVY0 SMR:Q9SVY0 IntAct:Q9SVY0 STRING:Q9SVY0
PaxDb:Q9SVY0 PRIDE:Q9SVY0 EnsemblPlants:AT3G57660.1 GeneID:824935
KEGG:ath:AT3G57660 TAIR:At3g57660 InParanoid:Q9SVY0
PhylomeDB:Q9SVY0 ProtClustDB:CLSN2684581 Genevestigator:Q9SVY0
Uniprot:Q9SVY0
Length = 1670
Score = 747 (268.0 bits), Expect = 4.9e-142, Sum P(4) = 4.9e-142
Identities = 170/402 (42%), Positives = 246/402 (61%)
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLT--------------PKDKVIIRHGELL- 117
+ E+ T+ P I KP+PLWTGKQV++ V+ +T P D R E+
Sbjct: 698 DAELLTVTPAILKPVPLWTGKQVITAVLNQITKGHPPFTVEKATKLPVDFFKCRSREVKP 757
Query: 118 -SGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGA 176
SG L KK+ + + + IR E + G++DK QF YGLVH V + +G+
Sbjct: 758 NSGDLTKKK--EIDESWKQNLNEDKLHIRKNEFVCGVIDKAQFAD--YGLVHTVHELYGS 813
Query: 177 EHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALG 236
A +LLS ++LFTV+LQ GFT GV D+++ ++ D +RTK + + +G G
Sbjct: 814 NAAGNLLSVFSRLFTVFLQTHGFTCGVDDLIILKDMDEERTKQLQECENVGERVLRKTFG 873
Query: 237 LPLDT--DPEIISSQLQEA-YASIPQFRAQIDRQYKSLLDKVTNN--INQVCLPEGLIEP 291
+ +D DP+ + S+++ Y A +DR + L++ ++ +N + L +GL++
Sbjct: 874 IDVDVQIDPQDMRSRIERILYEDGESALASLDRSIVNYLNQCSSKGVMNDL-LSDGLLKT 932
Query: 292 FPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAG 351
N + M SGAKGS VN QIS LGQ +LEGKR MVSG+TLP F P++ SPRAG
Sbjct: 933 PGRNCISLMTISGAKGSKVNFQQISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDWSPRAG 992
Query: 352 GFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVR 411
GF+ RF++G++PQE++FHCMAGREGL+DTAVKTSRSGYLQRCL+K+LE L V+YD TVR
Sbjct: 993 GFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKVNYDCTVR 1052
Query: 412 DSDLSLIQVLYGEDGLDVTKRQYLTD-KQFSFLEDNIKWICS 452
D+D S+IQ YGEDG+DV + ++ K+ + +D + CS
Sbjct: 1053 DADGSIIQFQYGEDGVDVHRSSFIEKFKELTINQDMVLQKCS 1094
Score = 313 (115.2 bits), Expect = 4.9e-142, Sum P(4) = 4.9e-142
Identities = 77/172 (44%), Positives = 107/172 (62%)
Query: 557 DKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLR 616
++ ++ K SLA PGE VGVLAAQS+GEPSTQMTLNTFH AGRG+MNVTLGIPRL+
Sbjct: 1137 EELLKLVKSKFFASLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQ 1196
Query: 617 EILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPE 676
EILM A IKTP M P L K ++ AN + + +IT+AD+++ +E+S
Sbjct: 1197 EILMTAAANIKTPIMTCPLLKG--KTKEDANDITDRLRKITVADIIKS------MELSVV 1248
Query: 677 PHMNYQMKFCFI---PAHMYRDKTSVKPSKIIDH-FERK----FLKELEVAI 720
P+ Y+ + C I ++Y+ + K + I + +E FL++LE AI
Sbjct: 1249 PYTVYENEVCSIHKLKINLYKPEHYPKHTDITEEDWEETMRAVFLRKLEDAI 1300
Score = 299 (110.3 bits), Expect = 4.9e-142, Sum P(4) = 4.9e-142
Identities = 65/150 (43%), Positives = 90/150 (60%)
Query: 861 EEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 920
+EK++ L G++ + +++ LD+ LY N IH M + +G+EAA IIRE+ +VF
Sbjct: 1518 DEKKASPALHASGVDFPALWEFQDKLDVRYLYSNSIHDMLNIFGVEAARETIIREINHVF 1577
Query: 921 AVYGIEVDPRHLSLVADYMTHSGTYVAMNR-NGIRLNPSFIQKMTFEMPLEKIRQASMQG 979
YGI V RHL+L+ADYMT SG Y M+R GI + S +MTFE + I QA+ G
Sbjct: 1578 KSYGISVSIRHLNLIADYMTFSGGYRPMSRMGGIAESTSPFCRMTFETATKFIVQAATYG 1637
Query: 980 REDSLRAPSARVMLGQECRQGTGLFQLRNR 1009
+D+L PSAR+ LG GTG F L R
Sbjct: 1638 EKDTLETPSARICLGLPALSGTGCFDLMQR 1667
Score = 126 (49.4 bits), Expect = 4.9e-142, Sum P(4) = 4.9e-142
Identities = 23/56 (41%), Positives = 37/56 (66%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
+AEA ++N ++QY P +G PL LIQDH++S L+ RDTFL + + L++ +
Sbjct: 619 RAEAYNIVNANNQYARPSNGEPLRALIQDHIVSSVLLTKRDTFLDKDHFNQLLFSS 674
>UNIPROTKB|G4NBX7 [details] [associations]
symbol:MGG_01158 "DNA-directed RNA polymerase"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
EMBL:CM001235 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0043581 GO:GO:0003899
KO:K02999 PANTHER:PTHR19376:SF11 RefSeq:XP_003717763.1
ProteinModelPortal:G4NBX7 EnsemblFungi:MGG_01158T0 GeneID:2675173
KEGG:mgr:MGG_01158 Uniprot:G4NBX7
Length = 1719
Score = 889 (318.0 bits), Expect = 1.3e-141, Sum P(4) = 1.3e-141
Identities = 206/447 (46%), Positives = 275/447 (61%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALC-- 70
+ EA L + QY+ G PL GLIQDH+ L +DT+L R+ Y LVY AL
Sbjct: 660 RTEALQLADTDHQYISGTQGKPLRGLIQDHLSVSVALCNKDTYLDRSAYHELVYNALRPE 719
Query: 71 ---ILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGEL-LSGILDKKQF 126
IL I +PP I KP WTGKQV++TV+ N+ P D G+L ++G K Q
Sbjct: 720 SGHILRERIELVPPAIIKPKARWTGKQVITTVLRNIRPLDC-----GDLWMTG---KTQV 771
Query: 127 GSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCL 186
+ +G VH+ + V R GE +SGILDK Q G + GLVHAV + +G A LLS +
Sbjct: 772 PAHAWG-VHSE-EGQVLFRDGEFISGILDKAQLGPSSGGLVHAVHEVYGPAIAGKLLSAM 829
Query: 187 AKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIIN-KARRLGTEAACNALGL----PLDT 241
+L T YL FT G+ D+ + E + R II+ +A +G + A + L P +
Sbjct: 830 GRLLTRYLNMRAFTCGMDDLKLTPEGEADRRNIIDSRAHLVGLQVAAKYVSLDQHQPAND 889
Query: 242 DPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMV 301
DPE++ +L+E + + +D S ++ +I CLP+GL + FP N +Q M
Sbjct: 890 DPELLR-RLEEVMRDDTK-QEGLDGVMNSGSKHLSQDITTACLPKGLEKQFPKNQMQAMT 947
Query: 302 ESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTG 361
SGAKG VN ISC LGQ LEG+R +MVSG++LP F P+E RAGG++ RF+TG
Sbjct: 948 ISGAKGGQVNANLISCNLGQQVLEGRRVPLMVSGKSLPCFKPFETDIRAGGYIVNRFLTG 1007
Query: 362 IQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVL 421
I+PQE++FH MAGREGLIDTAVKTSRSGYLQRCL+K +EGL + YD +VRD+D SL+Q L
Sbjct: 1008 IRPQEYYFHHMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLEIGYDNSVRDADGSLVQFL 1067
Query: 422 YGEDGLDVTKRQYLTDKQFSFLEDNIK 448
YGEDGLDVTK++YL D F+F+ NIK
Sbjct: 1068 YGEDGLDVTKQKYLKD--FTFILHNIK 1092
Score = 285 (105.4 bits), Expect = 1.3e-141, Sum P(4) = 1.3e-141
Identities = 62/159 (38%), Positives = 96/159 (60%)
Query: 566 KNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKA 625
K + SL +PGE VG++A QS+GEPSTQMTLNTFH AG NVTLGIPRLRE+LM A+
Sbjct: 1203 KYMRSLVHPGEAVGIVAGQSVGEPSTQMTLNTFHLAGHSAKNVTLGIPRLRELLMTASSK 1262
Query: 626 IKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWL--EISPEPHMNYQM 683
I TPSM + +M + + AK+++ + ++ V++K + E + I+ + + +
Sbjct: 1263 ISTPSMTLILNEEMSPAD--GEKFAKAISMLPLSHVVDKATVFERVGTSINHKLAKMFDV 1320
Query: 684 KFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAK 722
+ F P+ Y ++ S +++ E KF+ L +AK
Sbjct: 1321 RLRFFPSAEYTKTYAITTSDVLNTVETKFMSTLRRLVAK 1359
Score = 258 (95.9 bits), Expect = 1.3e-141, Sum P(4) = 1.3e-141
Identities = 56/145 (38%), Positives = 85/145 (58%)
Query: 863 KESK-HLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 921
+ES+ L+ T G N+ + QY ++ N++ ND+ + YG+EA IIRE++ VF
Sbjct: 1560 RESEVSLVHTAGSNLRAMQQYGSFINPNRISTNDVAAVLEIYGVEACRANIIRELRAVFE 1619
Query: 922 VYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGRE 981
+ I VD RHL+L+AD+MT SG + NR G+ N S KM+FE L ++ A + G
Sbjct: 1620 SHAITVDNRHLNLIADHMTRSGGFTPFNRMGLSGNVSPFTKMSFETTLAFLKDAVLDGDW 1679
Query: 982 DSLRAPSARVMLGQECRQGTGLFQL 1006
D L PS R+++G+ GTG F +
Sbjct: 1680 DDLSTPSGRLVMGRLGHVGTGAFDV 1704
Score = 45 (20.9 bits), Expect = 1.3e-141, Sum P(4) = 1.3e-141
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 520 QPLISTFQPDAHFGSISENLADSVVKYTKGRTDA 553
+P+ S P + + SE D++ Y K DA
Sbjct: 1136 EPVSSMLNPTRYAYATSEKFFDAMSSYVKENPDA 1169
Score = 38 (18.4 bits), Expect = 4.7e-16, Sum P(2) = 4.7e-16
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 639 MPKLEKKANRLAKSMTRITMADVLEKVKI 667
+PK + K + A S ++ +VLE++ +
Sbjct: 313 LPKSKPKKSGAAPSQRYLSAREVLERLDL 341
Score = 37 (18.1 bits), Expect = 3.4e-40, Sum P(4) = 3.4e-40
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 481 PNFIFSPHRTKFTMDLLEQWYQLDD 505
P + S K T L E W +L D
Sbjct: 423 PTSLLSQRHGKDTTILHEAWTELQD 447
Score = 37 (18.1 bits), Expect = 6.0e-16, Sum P(2) = 6.0e-16
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 824 NVFVKDVVNQHNI 836
N +V+ V+ QH I
Sbjct: 177 NAYVRQVLQQHQI 189
>UNIPROTKB|H9L2Z0 [details] [associations]
symbol:H9L2Z0 "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007066 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF04983 Pfam:PF04998 Pfam:PF05000
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
GO:GO:0003899 PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861
EMBL:AADN02030152 EMBL:AADN02030153 EMBL:AADN02030154
Ensembl:ENSGALT00000036063 Uniprot:H9L2Z0
Length = 517
Score = 662 (238.1 bits), Expect = 2.8e-124, Sum P(4) = 2.8e-124
Identities = 121/169 (71%), Positives = 143/169 (84%)
Query: 278 NINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRT 337
N + VC+P GL FP NNLQ MV+SGAKGSTVNT+QISCLLGQIELEG+RP +M SG++
Sbjct: 263 NNSLVCMPFGLHRSFPENNLQLMVQSGAKGSTVNTVQISCLLGQIELEGRRPPLMASGKS 322
Query: 338 LPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVK 397
LP F PY+ SP +GGFV GRF+TGI+P EFFFHCMAGREGL+DTAVKTSRSGYLQRC++K
Sbjct: 323 LPCFQPYDFSPSSGGFVTGRFLTGIKPSEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIK 382
Query: 398 HLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDN 446
HLEGL V YD+TVRDSD S++Q LYGEDGLD+ K Q+L +QF F+ DN
Sbjct: 383 HLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPEQFPFIADN 431
Score = 417 (151.9 bits), Expect = 2.8e-124, Sum P(4) = 2.8e-124
Identities = 90/191 (47%), Positives = 118/191 (61%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA L QYLVPKDG PL GLIQDH+ISG +++R F TR +YM LVY+ L
Sbjct: 12 RAEAYTLAFTDEQYLVPKDGKPLPGLIQDHMISGVSMTIRGCFFTREQYMELVYRGLTDK 71
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
I+T PP I KP LWTGKQV+ST++IN+ P++ V + L+G K + G +G
Sbjct: 72 KGRIKTFPPAIMKPQRLWTGKQVVSTLLINIIPENHVPLN----LTG---KAKIGGKAWG 124
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ V IR GELL G+LDK FGS+ YGLVH ++ +G E + +L CL +LFT
Sbjct: 125 K-----NEKVIIRSGELLCGVLDKAHFGSSAYGLVHCCYEIYGGETSGKVLPCLGRLFTA 179
Query: 193 YLQRVGFTLGV 203
YLQ + GV
Sbjct: 180 YLQLYQYMSGV 190
Score = 130 (50.8 bits), Expect = 2.8e-124, Sum P(4) = 2.8e-124
Identities = 40/116 (34%), Positives = 56/116 (48%)
Query: 480 KPNFIFSPHRTKFTMD---LLEQWYQLDDXXXXXXXXXXXXCPQPLISTFQPDAHFGSIS 536
K F+ P + F D LL+ WY+LD+ +PD++F S+S
Sbjct: 416 KTQFL-QPEQFPFIADNYELLKMWYELDEKKRRKYLK-------------RPDSYFASVS 461
Query: 537 ENLADSVVKYTKGR--TDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPS 590
E V Y R T+ + D+++ K SL +PGE VG+LAAQSIGEPS
Sbjct: 462 ETFESGVEDYINKREFTELKPLLILKDLLYLKWQRSLCDPGEAVGLLAAQSIGEPS 517
Score = 58 (25.5 bits), Expect = 2.8e-124, Sum P(4) = 2.8e-124
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 234 ALGLPLDTDPEIISSQLQEAYASIPQ--FRAQIDRQYKSLLDKVTNNINQVCL 284
AL LP + E + + Q+A+ Q F +D ++K ++ N +N+ CL
Sbjct: 193 ALNLPETSSCEDVQGKWQDAHLCKDQRDFN-MVDLKFKEEVNNYNNEVNKACL 244
Score = 39 (18.8 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 11/47 (23%), Positives = 19/47 (40%)
Query: 335 GRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDT 381
G+ LP + + + G F T Q E + + ++G I T
Sbjct: 31 GKPLPGLIQDHMISGVSMTIRGCFFTREQYMELVYRGLTDKKGRIKT 77
>UNIPROTKB|E1C4T2 [details] [associations]
symbol:POLR1A "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR007081 InterPro:IPR015699 Pfam:PF04998 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0003899
PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861
EMBL:AADN02014782 EMBL:AADN02014783 IPI:IPI00576593
Ensembl:ENSGALT00000025424 ArrayExpress:E1C4T2 Uniprot:E1C4T2
Length = 745
Score = 526 (190.2 bits), Expect = 4.1e-118, Sum P(4) = 4.1e-118
Identities = 112/249 (44%), Positives = 153/249 (61%)
Query: 489 RTKFTMDLLEQWYQLDDXXXXXXXXXXXXCPQPLISTFQPDAHFGSISENLADSVVKYTK 548
R T+ LL+ WY+LD+ CP P ++ ++PD++F S+SE V Y
Sbjct: 147 RDPATLQLLKMWYELDEKKRRKYLKKANKCPDPSLAVWRPDSYFASVSETFESGVEDYIN 206
Query: 549 GRTDASH---------VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFH 599
R S D+ D+++ K SL +PGE VG+LAAQSIGEPSTQMTLNTFH
Sbjct: 207 KRECKSRGGCMQPALSSDRLKDLLYLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFH 266
Query: 600 FAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMA 659
FAGRG+MNVTLGIPRLREILM+A+ IKTP M +P L K KK +L K +TR+ +A
Sbjct: 267 FAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVL-GTKKAHKKVKQLKKQLTRVCLA 325
Query: 660 DVLEKVKIKEWLEISPEP--HMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELE 717
+VL+KV+++E L + + H Y++KFCF+P YR++ VKP I+ E +F K
Sbjct: 326 EVLQKVELEESLHLKNKENSHRLYKIKFCFLPYEYYREEKCVKPRDILRFMETRFFKIFL 385
Query: 718 VAIAKRAAQ 726
AI +R A+
Sbjct: 386 EAIRRRRAK 394
Score = 404 (147.3 bits), Expect = 4.1e-118, Sum P(4) = 4.1e-118
Identities = 80/147 (54%), Positives = 109/147 (74%)
Query: 861 EEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 920
E+ E + +L T+GIN+ + +Y +LDLN+LY NDIH MA YGIE+A RV+I+E+K+VF
Sbjct: 595 EKGEKELILHTEGINLAELFRYSDILDLNRLYSNDIHAMAKNYGIESALRVVIKEIKDVF 654
Query: 921 AVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGR 980
AVYGI VDPRHLSLVADYM G Y MNR GI+ + S +Q+MTFE + +++A+M G
Sbjct: 655 AVYGIVVDPRHLSLVADYMCFEGVYKPMNRFGIQSSSSPLQQMTFETSYKFLKEATMMGA 714
Query: 981 EDSLRAPSARVMLGQECRQGTGLFQLR 1007
D LR+PSA ++LG+ + GTGLF L+
Sbjct: 715 HDELRSPSACLVLGKVVKGGTGLFDLK 741
Score = 290 (107.1 bits), Expect = 4.1e-118, Sum P(4) = 4.1e-118
Identities = 56/81 (69%), Positives = 67/81 (82%)
Query: 372 MAGREGLIDTAVKTSRSGYLQR--CLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDV 429
MAGREGL+DTAVKTSRSGYLQR C++KHLEGL V YD+TVRDSD S++Q LYGEDGLD+
Sbjct: 1 MAGREGLVDTAVKTSRSGYLQRNRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDI 60
Query: 430 TKRQYLTDKQFSFLEDNIKWI 450
K Q+L +QF F+ DN + I
Sbjct: 61 PKTQFLQPEQFPFIADNYEVI 81
Score = 75 (31.5 bits), Expect = 4.1e-118, Sum P(4) = 4.1e-118
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 822 STNVFVKDVVNQHNIVHKYSYDKKNHMWCKL-LFLP 856
S V V V+N H + Y++D +N +WC++ L LP
Sbjct: 522 SAEVRVNAVLNSHPSIQDYTFDTENELWCEVSLTLP 557
Score = 50 (22.7 bits), Expect = 4.7e-38, Sum P(3) = 4.7e-38
Identities = 10/40 (25%), Positives = 23/40 (57%)
Query: 632 EIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVK-IKEW 670
+ PF+ D ++ +K N L +++ R+ ++ K I++W
Sbjct: 70 QFPFIADNYEVIQKTNHLNEALARMESHQAKQQFKAIRKW 109
>UNIPROTKB|H9L2Z3 [details] [associations]
symbol:H9L2Z3 "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008811 "chloramphenicol O-acetyltransferase activity"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] InterPro:IPR001707 InterPro:IPR007066
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
InterPro:IPR018372 Pfam:PF00302 Pfam:PF04983 Pfam:PF04998
Pfam:PF05000 ProDom:PD002660 PROSITE:PS00100 SMART:SM01059
GO:GO:0005634 Gene3D:3.30.559.10 InterPro:IPR023213 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 GO:GO:0003899 PANTHER:PTHR19376:SF11
GeneTree:ENSGT00550000074861 GO:GO:0008811 EMBL:AADN02030152
EMBL:AADN02030153 EMBL:AADN02030154 Ensembl:ENSGALT00000036066
OMA:INKRELH Uniprot:H9L2Z3
Length = 533
Score = 1069 (381.4 bits), Expect = 3.3e-117, Sum P(2) = 3.3e-117
Identities = 223/441 (50%), Positives = 293/441 (66%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA L QYLVPKDG PL GLIQDH+ISG +++R F TR +YM LVY+ L
Sbjct: 12 RAEAYTLAFTDEQYLVPKDGKPLPGLIQDHMISGVSMTIRGCFFTREQYMELVYRGLTDK 71
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
I+T PP I KP LWTGKQV+ST++IN+ P++ V + L+G K + G +
Sbjct: 72 KGRIKTFPPAIMKPQRLWTGKQVVSTLLINIIPENHVPLN----LTG---KAKIGGKAW- 123
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ +++V IR GELL G+LDK FGS+ YGLVH ++ +G E + +L CL +LFT
Sbjct: 124 -MRGPANSNVIIRSGELLCGVLDKAHFGSSAYGLVHCCYEIYGGETSGKVLPCLGRLFTA 182
Query: 193 YLQRVGFTLGVRD-------ILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEI 245
YLQ F L V + + + + K++ A C+ G +
Sbjct: 183 YLQLYRFDLNVANMDNFFAPVFTMGKYYTQGDKVLMPLAIQVHHAVCD--GFHVGR---- 236
Query: 246 ISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGA 305
+ ++LQ+ Y Q A +D ++K ++ N +N+VC+P GL FP NNLQ MV+SGA
Sbjct: 237 MLNELQQ-YCDEWQGGA-VDLKFKEEVNNYNNEVNKVCMPFGLHRSFPENNLQLMVQSGA 294
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGSTVNT+QISCLLGQIELEG+RP +M SG++LP F PY+ SP +GGFV GRF+TGI+P
Sbjct: 295 KGSTVNTVQISCLLGQIELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVTGRFLTGIKPS 354
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V YD+TVRDSD S++Q LYGED
Sbjct: 355 EFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGED 414
Query: 426 GLDVTKRQYLTDKQFSFLEDN 446
GLD+ K Q+L +QF F+ DN
Sbjct: 415 GLDIPKTQFLQPEQFPFIADN 435
Score = 106 (42.4 bits), Expect = 3.3e-117, Sum P(2) = 3.3e-117
Identities = 29/69 (42%), Positives = 39/69 (56%)
Query: 529 DAHFGSISENLADSVVKYTKGRT----DA---SHVDKFYDMIFYKNLLSLANPGENVGVL 581
+++F S+SE V Y R +A S K D+++ K SL +PGE VG+L
Sbjct: 465 NSYFASVSETFESGVEDYINKRELHSGEAFGLSVPSKLKDLLYLKWQRSLCDPGEAVGLL 524
Query: 582 AAQSIGEPS 590
AAQSIGEPS
Sbjct: 525 AAQSIGEPS 533
>UNIPROTKB|H9L2Z2 [details] [associations]
symbol:H9L2Z2 "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008811 "chloramphenicol O-acetyltransferase activity"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] InterPro:IPR001707 InterPro:IPR007066
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF04983 Pfam:PF04998 Pfam:PF05000 ProDom:PD002660
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
GO:GO:0003899 PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861
GO:GO:0008811 EMBL:AADN02030152 EMBL:AADN02030153 EMBL:AADN02030154
Ensembl:ENSGALT00000036065 Uniprot:H9L2Z2
Length = 527
Score = 1003 (358.1 bits), Expect = 3.4e-109, Sum P(2) = 3.4e-109
Identities = 213/426 (50%), Positives = 280/426 (65%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA L QYLVPKDG PL GLIQDH+ISG +++R F TR +YM LVY+ L
Sbjct: 12 RAEAYTLAFTDEQYLVPKDGKPLPGLIQDHMISGVSMTIRGCFFTREQYMELVYRGLTDK 71
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
I+T PP I KP LWTGKQV+ST++IN+ P++ V + L+G K + +
Sbjct: 72 KGRIKTFPPAIMKPQRLWTGKQVVSTLLINIIPENHVPLN----LTG---KAKLVVVFF- 123
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+++ + V IR GELL G+LDK FGS+ YGLVH ++ +G E + +L CL +LFT
Sbjct: 124 -LNSCFLFQVIIRSGELLCGVLDKAHFGSSAYGLVHCCYEIYGGETSGKVLPCLGRLFTA 182
Query: 193 YLQRVGFTLGVRDILVRQE---RDRKRTKII-NKARRLGTEAACNALGLPLDTDP-EIIS 247
YLQ ++ + + R ++I N T+ +T E +
Sbjct: 183 YLQLYHVACYGENLAYFPKGFIENITRLQLIHNLMYHTHTQET--------ETSSCEDVQ 234
Query: 248 SQLQEAYASIPQ--FRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGA 305
+ Q+A+ Q F +D ++K ++ N +N+VC+P GL FP NNLQ MV+SGA
Sbjct: 235 GKWQDAHLCKDQRDFN-MVDLKFKEEVNNYNNEVNKVCMPFGLHRSFPENNLQLMVQSGA 293
Query: 306 KGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQ 365
KGSTVNT+QISCLLGQIELEG+RP +M SG++LP F PY+ SP +GGFV GRF+TGI+P
Sbjct: 294 KGSTVNTVQISCLLGQIELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVTGRFLTGIKPS 353
Query: 366 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGED 425
EFFFHCMAGREGL+DTAVKTSRSGYLQRC++KHLEGL V YD+TVRDSD S++Q LYGED
Sbjct: 354 EFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGED 413
Query: 426 GLDVTK 431
GLD+ K
Sbjct: 414 GLDIPK 419
Score = 96 (38.9 bits), Expect = 3.4e-109, Sum P(2) = 3.4e-109
Identities = 21/46 (45%), Positives = 30/46 (65%)
Query: 545 KYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPS 590
K+ K + ++ D+++ K SL +PGE VG+LAAQSIGEPS
Sbjct: 482 KHLKVESKIISTNELKDLLYLKWQRSLCDPGEAVGLLAAQSIGEPS 527
>UNIPROTKB|H9L2Z1 [details] [associations]
symbol:H9L2Z1 "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007066 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF04983 Pfam:PF04998 Pfam:PF05000
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
GO:GO:0003899 PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861
EMBL:AADN02030152 EMBL:AADN02030153 EMBL:AADN02030154
Ensembl:ENSGALT00000036064 Uniprot:H9L2Z1
Length = 522
Score = 843 (301.8 bits), Expect = 7.0e-92, Sum P(2) = 7.0e-92
Identities = 171/307 (55%), Positives = 215/307 (70%)
Query: 142 VTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTL 201
V IR GELL G+LDK FGS+ YGLVH ++ +G E + +L CL +LFT YLQ F
Sbjct: 129 VIIRSGELLCGVLDKAHFGSSAYGLVHCCYEIYGGETSGKVLPCLGRLFTAYLQLYRFKR 188
Query: 202 GVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQEAYASIPQ-- 259
G L+R + I ARR G +AA G + E + + Q+A+ Q
Sbjct: 189 GQYGQLLRPRFHHGQ---ILYARRQGADAA----GDSETSSCEDVQGKWQDAHLCKDQRD 241
Query: 260 FRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLL 319
F +D ++K ++ N +N+VC+P GL FP NNLQ MV+SGAKGSTVNT+QISCLL
Sbjct: 242 FN-MVDLKFKEEVNNYNNEVNKVCMPFGLHRSFPENNLQLMVQSGAKGSTVNTVQISCLL 300
Query: 320 GQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLI 379
GQIELEG+RP +M SG++LP F PY+ SP +GGFV GRF+TGI+P EFFFHCMAGREGL+
Sbjct: 301 GQIELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVTGRFLTGIKPSEFFFHCMAGREGLV 360
Query: 380 DTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDKQ 439
DTAVKTSRSGYLQRC++KHLEGL V YD+TVRDSD S++Q LYGEDGLD+ K Q+L +Q
Sbjct: 361 DTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPEQ 420
Query: 440 FSFLEDN 446
F F+ DN
Sbjct: 421 FPFIADN 427
Score = 426 (155.0 bits), Expect = 6.4e-46, Sum P(2) = 6.4e-46
Identities = 99/219 (45%), Positives = 129/219 (58%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA L QYLVPKDG PL GLIQDH+ISG +++R F TR +YM LVY+ L
Sbjct: 12 RAEAYTLAFTDEQYLVPKDGKPLPGLIQDHMISGVSMTIRGCFFTREQYMELVYRGLTDK 71
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
I+T PP I KP LWTGKQV+ST++IN+ P++ V + L+G K + G +G
Sbjct: 72 KGRIKTFPPAIMKPQRLWTGKQVVSTLLINIIPENHVPLN----LTG---KAKIGGKAWG 124
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ V IR GELL G+LDK FGS+ YGLVH ++ +G E + +L CL +LFT
Sbjct: 125 K-----NEKVIIRSGELLCGVLDKAHFGSSAYGLVHCCYEIYGGETSGKVLPCLGRLFTA 179
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAA 231
YLQ F G L+R + I ARR G +AA
Sbjct: 180 YLQLYRFKRGQYGQLLRPRFHHGQ---ILYARRQGADAA 215
Score = 92 (37.4 bits), Expect = 7.0e-92, Sum P(2) = 7.0e-92
Identities = 19/30 (63%), Positives = 24/30 (80%)
Query: 561 DMIFYKNLLSLANPGENVGVLAAQSIGEPS 590
D+++ K SL +PGE VG+LAAQSIGEPS
Sbjct: 493 DLLYLKWQRSLCDPGEAVGLLAAQSIGEPS 522
>UNIPROTKB|F1LQN7 [details] [associations]
symbol:Polr1a "DNA-directed RNA polymerase" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF05000 SMART:SM00663 RGD:620824 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 PANTHER:PTHR19376:SF11 IPI:IPI00389616
Ensembl:ENSRNOT00000013417 ArrayExpress:F1LQN7 Uniprot:F1LQN7
Length = 1011
Score = 844 (302.2 bits), Expect = 2.7e-84, P = 2.7e-84
Identities = 183/375 (48%), Positives = 242/375 (64%)
Query: 2 DGWTQNASHFL-----KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFL 56
DG NA HF +AEA L QYLVPKDG PL+GLIQDH++SGA +++R F
Sbjct: 618 DGDEMNA-HFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFF 676
Query: 57 TRAEYMNLVYQALCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR-HGE 115
TR +YM LVY+ L ++ PP I KP PLWTGKQV+ST++IN+ P+D + G+
Sbjct: 677 TREQYMELVYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDYTPLNLTGK 736
Query: 116 LLSGI---LDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWD 172
G + +K + ++ ++ V IR GELL G+LDK +GS+ YGLVH ++
Sbjct: 737 AKIGSKAWVKEKPRPVPDFD-PDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYE 795
Query: 173 THGAEHAISLLSCLAKLFTVYLQRV-GFTLGVRDILVRQERDRKRTKIINKARRLGTEAA 231
+G E + +L+CLA+LFT YLQ GFTLGV DILV+ D R +II ++ + G A
Sbjct: 796 IYGGETSGRVLTCLARLFTAYLQLYRGFTLGVEDILVKPNADVMRQRIIEESTQCGPRAV 855
Query: 232 CNALGLPLDTDPEIISSQLQEAYASIPQ--FRAQIDRQYKSLLDKVTNNINQVCLPEGLI 289
AL LP + I + Q+A+ Q F ID ++K ++ +N IN+ C+P GL
Sbjct: 856 RAALNLPEAASCDEIQGKWQDAHLGKDQRDFN-MIDMKFKEEVNHYSNEINKACMPFGLH 914
Query: 290 EPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPR 349
FP NNLQ MV+SGAKGSTVNTMQISCLLGQIELEG+RP +M SG++LP F PYE +PR
Sbjct: 915 RQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPR 974
Query: 350 AGGFVDGRFMTGIQP 364
AGGFV GRF+TGI+P
Sbjct: 975 AGGFVTGRFLTGIRP 989
>POMBASE|SPBC28F2.12 [details] [associations]
symbol:rpb1 "RNA polymerase II large subunit Rpb1"
species:4896 "Schizosaccharomyces pombe" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IC] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IC] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 PomBase:SPBC28F2.12 GO:GO:0005829
GO:GO:0046872 GO:GO:0003677 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 GO:GO:0005665 PDB:3H0G PDBsum:3H0G
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 EMBL:X56564 PIR:S26849
RefSeq:NP_595673.1 ProteinModelPortal:P36594 IntAct:P36594
MINT:MINT-1214221 STRING:P36594 EnsemblFungi:SPBC28F2.12.1
GeneID:2540292 KEGG:spo:SPBC28F2.12 OrthoDB:EOG4J14H5
EvolutionaryTrace:P36594 NextBio:20801422 Uniprot:P36594
Length = 1752
Score = 362 (132.5 bits), Expect = 6.9e-81, Sum P(4) = 6.9e-81
Identities = 73/141 (51%), Positives = 98/141 (69%)
Query: 294 ANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGF 353
+NN++ MV +G+KGS +N Q+S +GQ +EGKR RTLP F + SP + GF
Sbjct: 746 SNNVKQMVAAGSKGSFINISQMSACVGQQIVEGKRIPFGFKYRTLPHFPKDDDSPESRGF 805
Query: 354 VDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDS 413
++ ++ G+ PQEFFFH MAGREGLIDTAVKT+ +GY+QR LVK +E + V YD TVR++
Sbjct: 806 IENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKAMEDVMVRYDGTVRNA 865
Query: 414 DLSLIQVLYGEDGLDVTKRQY 434
+IQ YGEDGLD T +Y
Sbjct: 866 MGDIIQFAYGEDGLDATLVEY 886
Score = 226 (84.6 bits), Expect = 6.9e-81, Sum P(4) = 6.9e-81
Identities = 49/98 (50%), Positives = 65/98 (66%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
++ +PGE VG LAAQSIGEP+TQMTLNTFH+AG NVTLG+PRL+EIL +A K IKTP
Sbjct: 1059 AVVSPGEMVGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVA-KNIKTP 1117
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKI 667
S+ I +P + A + + T++ V +I
Sbjct: 1118 SLTIYLMPWIAANMDLAKNVQTQIEHTTLSTVTSATEI 1155
Score = 222 (83.2 bits), Expect = 6.9e-81, Sum P(4) = 6.9e-81
Identities = 54/140 (38%), Positives = 79/140 (56%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE + V Q + P+ P+ G++QD + K SLRD FLTR MN++ L +
Sbjct: 504 RAEIQEITMVPKQIVSPQSNKPVMGIVQDTLAGVRKFSLRDNFLTRNAVMNIM---LWVP 560
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVI---INL----------TPKDK-VIIRHGELLS 118
+ + PP I KP LWTGKQ+LS +I INL P D ++I +GE++
Sbjct: 561 DWDGILPPPVILKPKVLWTGKQILSLIIPKGINLIRDDDKQSLSNPTDSGMLIENGEIIY 620
Query: 119 GILDKKQFGSTQYGLVHAVW 138
G++DKK G++Q GLVH +W
Sbjct: 621 GVVDKKTVGASQGGLVHTIW 640
Score = 202 (76.2 bits), Expect = 6.9e-81, Sum P(4) = 6.9e-81
Identities = 47/146 (32%), Positives = 76/146 (52%)
Query: 862 EKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 921
E+ + +L+TDGIN+ + D + Y N + GIEA +++E++NV
Sbjct: 1305 ERADEWVLETDGINLTEAMTVEGV-DATRTYSNSFVEILQILGIEATRSALLKELRNVIE 1363
Query: 922 VYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGR 980
G V+ RHL+L+ D MT G +A+ R+GI R + + +FE +E + A+ G
Sbjct: 1364 FDGSYVNYRHLALLCDVMTSRGHLMAITRHGINRAETGALMRCSFEETVEILMDAAASGE 1423
Query: 981 EDSLRAPSARVMLGQECRQGTGLFQL 1006
+D + S +MLGQ GTG F +
Sbjct: 1424 KDDCKGISENIMLGQLAPMGTGAFDI 1449
Score = 166 (63.5 bits), Expect = 4.8e-75, Sum P(4) = 4.8e-75
Identities = 55/204 (26%), Positives = 98/204 (48%)
Query: 83 IWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDK--KQFGSTQYGLVHAVWDT 140
+W +P W G +L +I L PK V+ ++LS I+ K + D+
Sbjct: 557 LW--VPDWDG--ILPPPVI-LKPK--VLWTGKQILSLIIPKGINLIRDDDKQSLSNPTDS 609
Query: 141 HVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFT 200
+ I +GE++ G++DKK G++Q GLVH +W G E + + ++ +L GF+
Sbjct: 610 GMLIENGEIIYGVVDKKTVGASQGGLVHTIWKEKGPEICKGFFNGIQRVVNYWLLHNGFS 669
Query: 201 LGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQEAYAS--IP 258
+G+ D + + ++ T+ + +ARR E +A L +P + + EA S +
Sbjct: 670 IGIGDTIADADTMKEVTRTVKEARRQVAECIQDAQHNRLKPEPGMTLRESFEAKVSRILN 729
Query: 259 QFRAQIDRQYKSLLDKVTNNINQV 282
Q R R + L K +NN+ Q+
Sbjct: 730 QARDNAGRSAEHSL-KDSNNVKQM 752
Score = 40 (19.1 bits), Expect = 1.5e-28, Sum P(3) = 1.5e-28
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 348 PRAGGFVDGRFMTGIQPQEFFFHCMAGREGLID 380
PR GG +D R T I Q F C E + D
Sbjct: 50 PRVGGLLDPRLGT-IDRQ---FKCQTCGETMAD 78
>CGD|CAL0000919 [details] [associations]
symbol:RPO21 species:5476 "Candida albicans" [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0009267 "cellular response to starvation"
evidence=IMP] [GO:0036170 "filamentous growth of a population of
unicellular organisms in response to starvation" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0071216
"cellular response to biotic stimulus" evidence=IMP] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0003968 "RNA-directed RNA
polymerase activity" evidence=IEA] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 CGD:CAL0000919
GO:GO:0071216 GO:GO:0036180 GO:GO:0003677 GO:GO:0006366
GO:GO:0009267 Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:AACQ01000032 GO:GO:0036170 GO:GO:0003899 eggNOG:COG0086
GO:GO:0005665 KO:K03006 RefSeq:XP_719414.1 STRING:Q5ACI7
GeneID:3638991 KEGG:cal:CaO19.7655 Uniprot:Q5ACI7
Length = 1728
Score = 371 (135.7 bits), Expect = 2.0e-79, Sum P(4) = 2.0e-79
Identities = 74/137 (54%), Positives = 97/137 (70%)
Query: 295 NNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFV 354
NN++ MV SG+KGS +N Q+S +GQ +EGKR R+LP F + SP + GFV
Sbjct: 741 NNVKQMVTSGSKGSFINISQMSACVGQQIVEGKRIPFGFGDRSLPHFTKDDYSPESKGFV 800
Query: 355 DGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSD 414
+ ++ G+ PQEFFFH MAGREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S
Sbjct: 801 ENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSL 860
Query: 415 LSLIQVLYGEDGLDVTK 431
+IQ +YGEDG+D T+
Sbjct: 861 GDIIQFIYGEDGIDGTQ 877
Score = 237 (88.5 bits), Expect = 2.0e-79, Sum P(4) = 2.0e-79
Identities = 50/98 (51%), Positives = 69/98 (70%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
S+ +PGE VGV+AAQSIGEP+TQMTLNTFH+AG NVTLG+PRL+EIL +A K IKTP
Sbjct: 1057 SIVHPGEMVGVVAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVA-KNIKTP 1115
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKI 667
+M + P++ +KA + ++ T+ +V +I
Sbjct: 1116 AMTVFLDPEVASDIEKAKIVQSAIEHTTLKNVTSSTEI 1153
Score = 199 (75.1 bits), Expect = 2.0e-79, Sum P(4) = 2.0e-79
Identities = 52/153 (33%), Positives = 79/153 (51%)
Query: 856 PSNLFEEKESKH-LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIR 914
P E K+ K +L+TDG+N+ + + D + Y ND + S GIEA + +
Sbjct: 1294 PDETGEFKQGKEWVLETDGVNLADVMAVPGV-DSTRTYSNDFIEVLSVLGIEATRSSLYK 1352
Query: 915 EVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIR 973
E+ NV A G V+ RH++L+ D MT G +A+ R+GI R + + + +FE +E +
Sbjct: 1353 EILNVIAFDGSYVNYRHMALLVDVMTSRGHLMAITRHGINRSDTGALMRCSFEETVEILL 1412
Query: 974 QASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
A+ D + S VMLGQ GTG F L
Sbjct: 1413 DAAAAAELDDCKGISENVMLGQMAPLGTGSFDL 1445
Score = 190 (71.9 bits), Expect = 2.0e-79, Sum P(4) = 2.0e-79
Identities = 57/175 (32%), Positives = 86/175 (49%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
++E S + V Q + P+ P+ G++QD + K++LRD F+ + MN+ Y I
Sbjct: 498 RSELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIEYDQVMNMCYW---IP 554
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVI---INL----------TPKDK-VIIRHGELLS 118
N + PP + KP LWTGKQ+LS I I+L +PKD ++I GE++
Sbjct: 555 NWDGVIPPPAVVKPKQLWTGKQLLSLAIPKGIHLQRFDGGRDLLSPKDTGMLIVDGEIMF 614
Query: 119 GILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDT 173
G++DKK G+T GL+H V EL S I + G + DT
Sbjct: 615 GVVDKKTVGATGGGLIHTVMREKGPKVCAELFSSIQKVVNYWLLHNGFSIGIGDT 669
Score = 143 (55.4 bits), Expect = 1.6e-74, Sum P(4) = 1.6e-74
Identities = 42/146 (28%), Positives = 70/146 (47%)
Query: 139 DTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVG 198
DT + I GE++ G++DKK G+T GL+H V G + L S + K+ +L G
Sbjct: 602 DTGMLIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPKVCAELFSSIQKVVNYWLLHNG 661
Query: 199 FTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQEAYAS-- 256
F++G+ D + + R K I +A++ E +A L+ +P + + E S
Sbjct: 662 FSIGIGDTIADAQTMRDVNKTIQEAKQKVQEIIIDAQHNKLEPEPGMTLRESFEHNVSRV 721
Query: 257 IPQFRAQIDRQYKSLLDKVTNNINQV 282
+ Q R R + L K NN+ Q+
Sbjct: 722 LNQARDTAGRSAEMSL-KDLNNVKQM 746
Score = 40 (19.1 bits), Expect = 1.9e-24, Sum P(3) = 1.9e-24
Identities = 13/63 (20%), Positives = 32/63 (50%)
Query: 213 DRKRTKIINKARRLGT-EAACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSL 271
D ++ KI+ A T + ++ + D DP ++ +++ Y ++ + A D++ +
Sbjct: 1128 DIEKAKIVQSAIEHTTLKNVTSSTEIYYDPDPR--TTVIEDDYDTVEAYFAIPDQKVEES 1185
Query: 272 LDK 274
+DK
Sbjct: 1186 IDK 1188
>UNIPROTKB|Q5ACI7 [details] [associations]
symbol:RPO21 "DNA-directed RNA polymerase" species:237561
"Candida albicans SC5314" [GO:0009267 "cellular response to
starvation" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0036170 "filamentous growth of a population of
unicellular organisms in response to starvation" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0071216
"cellular response to biotic stimulus" evidence=IMP]
InterPro:IPR000684 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007073 InterPro:IPR007075
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
Pfam:PF00623 Pfam:PF04983 Pfam:PF04990 Pfam:PF04992 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 Pfam:PF05001 PROSITE:PS00115
SMART:SM00663 CGD:CAL0000919 GO:GO:0071216 GO:GO:0036180
GO:GO:0003677 GO:GO:0006366 GO:GO:0009267 Gene3D:2.40.40.20
InterPro:IPR009010 EMBL:AACQ01000032 GO:GO:0036170 GO:GO:0003899
eggNOG:COG0086 GO:GO:0005665 KO:K03006 RefSeq:XP_719414.1
STRING:Q5ACI7 GeneID:3638991 KEGG:cal:CaO19.7655 Uniprot:Q5ACI7
Length = 1728
Score = 371 (135.7 bits), Expect = 2.0e-79, Sum P(4) = 2.0e-79
Identities = 74/137 (54%), Positives = 97/137 (70%)
Query: 295 NNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFV 354
NN++ MV SG+KGS +N Q+S +GQ +EGKR R+LP F + SP + GFV
Sbjct: 741 NNVKQMVTSGSKGSFINISQMSACVGQQIVEGKRIPFGFGDRSLPHFTKDDYSPESKGFV 800
Query: 355 DGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSD 414
+ ++ G+ PQEFFFH MAGREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S
Sbjct: 801 ENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSL 860
Query: 415 LSLIQVLYGEDGLDVTK 431
+IQ +YGEDG+D T+
Sbjct: 861 GDIIQFIYGEDGIDGTQ 877
Score = 237 (88.5 bits), Expect = 2.0e-79, Sum P(4) = 2.0e-79
Identities = 50/98 (51%), Positives = 69/98 (70%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
S+ +PGE VGV+AAQSIGEP+TQMTLNTFH+AG NVTLG+PRL+EIL +A K IKTP
Sbjct: 1057 SIVHPGEMVGVVAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVA-KNIKTP 1115
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKI 667
+M + P++ +KA + ++ T+ +V +I
Sbjct: 1116 AMTVFLDPEVASDIEKAKIVQSAIEHTTLKNVTSSTEI 1153
Score = 199 (75.1 bits), Expect = 2.0e-79, Sum P(4) = 2.0e-79
Identities = 52/153 (33%), Positives = 79/153 (51%)
Query: 856 PSNLFEEKESKH-LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIR 914
P E K+ K +L+TDG+N+ + + D + Y ND + S GIEA + +
Sbjct: 1294 PDETGEFKQGKEWVLETDGVNLADVMAVPGV-DSTRTYSNDFIEVLSVLGIEATRSSLYK 1352
Query: 915 EVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIR 973
E+ NV A G V+ RH++L+ D MT G +A+ R+GI R + + + +FE +E +
Sbjct: 1353 EILNVIAFDGSYVNYRHMALLVDVMTSRGHLMAITRHGINRSDTGALMRCSFEETVEILL 1412
Query: 974 QASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
A+ D + S VMLGQ GTG F L
Sbjct: 1413 DAAAAAELDDCKGISENVMLGQMAPLGTGSFDL 1445
Score = 190 (71.9 bits), Expect = 2.0e-79, Sum P(4) = 2.0e-79
Identities = 57/175 (32%), Positives = 86/175 (49%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
++E S + V Q + P+ P+ G++QD + K++LRD F+ + MN+ Y I
Sbjct: 498 RSELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIEYDQVMNMCYW---IP 554
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVI---INL----------TPKDK-VIIRHGELLS 118
N + PP + KP LWTGKQ+LS I I+L +PKD ++I GE++
Sbjct: 555 NWDGVIPPPAVVKPKQLWTGKQLLSLAIPKGIHLQRFDGGRDLLSPKDTGMLIVDGEIMF 614
Query: 119 GILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDT 173
G++DKK G+T GL+H V EL S I + G + DT
Sbjct: 615 GVVDKKTVGATGGGLIHTVMREKGPKVCAELFSSIQKVVNYWLLHNGFSIGIGDT 669
Score = 143 (55.4 bits), Expect = 1.6e-74, Sum P(4) = 1.6e-74
Identities = 42/146 (28%), Positives = 70/146 (47%)
Query: 139 DTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVG 198
DT + I GE++ G++DKK G+T GL+H V G + L S + K+ +L G
Sbjct: 602 DTGMLIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPKVCAELFSSIQKVVNYWLLHNG 661
Query: 199 FTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQEAYAS-- 256
F++G+ D + + R K I +A++ E +A L+ +P + + E S
Sbjct: 662 FSIGIGDTIADAQTMRDVNKTIQEAKQKVQEIIIDAQHNKLEPEPGMTLRESFEHNVSRV 721
Query: 257 IPQFRAQIDRQYKSLLDKVTNNINQV 282
+ Q R R + L K NN+ Q+
Sbjct: 722 LNQARDTAGRSAEMSL-KDLNNVKQM 746
Score = 40 (19.1 bits), Expect = 1.9e-24, Sum P(3) = 1.9e-24
Identities = 13/63 (20%), Positives = 32/63 (50%)
Query: 213 DRKRTKIINKARRLGT-EAACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQYKSL 271
D ++ KI+ A T + ++ + D DP ++ +++ Y ++ + A D++ +
Sbjct: 1128 DIEKAKIVQSAIEHTTLKNVTSSTEIYYDPDPR--TTVIEDDYDTVEAYFAIPDQKVEES 1185
Query: 272 LDK 274
+DK
Sbjct: 1186 IDK 1188
>SGD|S000002299 [details] [associations]
symbol:RPO21 "RNA polymerase II largest subunit B220"
species:4932 "Saccharomyces cerevisiae" [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA;IMP] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA;IDA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003968 "RNA-directed
RNA polymerase activity" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 SGD:S000002299 GO:GO:0005739
GO:GO:0046872 GO:GO:0003677 EMBL:BK006938 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:X96876 EMBL:U27182
GO:GO:0003899 PDB:4GWQ PDBsum:4GWQ PDB:2LO6 PDBsum:2LO6
eggNOG:COG0086 GO:GO:0005665 PDB:1I3Q PDB:1I50 PDB:1I6H PDB:1K83
PDB:1NIK PDB:1NT9 PDB:1PQV PDB:1R5U PDB:1R9S PDB:1R9T PDB:1SFO
PDB:1TWA PDB:1TWC PDB:1TWF PDB:1TWG PDB:1TWH PDB:1WCM PDB:1Y1V
PDB:1Y1W PDB:1Y1Y PDB:1Y77 PDB:2B63 PDB:2B8K PDB:2E2H PDB:2E2I
PDB:2E2J PDB:2JA5 PDB:2JA6 PDB:2JA7 PDB:2JA8 PDB:2NVQ PDB:2NVT
PDB:2NVX PDB:2NVY PDB:2NVZ PDB:2R7Z PDB:2R92 PDB:2R93 PDB:2VUM
PDB:2YU9 PDB:3CQZ PDB:3FKI PDB:3GTG PDB:3GTJ PDB:3GTK PDB:3GTL
PDB:3GTM PDB:3GTO PDB:3GTP PDB:3GTQ PDB:3H3V PDB:3HOU PDB:3HOV
PDB:3HOW PDB:3HOX PDB:3HOY PDB:3HOZ PDB:3I4M PDB:3I4N PDB:3K1F
PDB:3K7A PDB:3M3Y PDB:3M4O PDB:3PO2 PDB:3PO3 PDB:3QT1 PDB:3RZD
PDB:3RZO PDB:3S14 PDB:3S15 PDB:3S16 PDB:3S17 PDB:3S1M PDB:3S1N
PDB:3S1Q PDB:3S1R PDB:3S2D PDB:3S2H PDB:4A3B PDB:4A3C PDB:4A3D
PDB:4A3E PDB:4A3F PDB:4A3G PDB:4A3I PDB:4A3J PDB:4A3K PDB:4A3L
PDB:4A3M PDB:4A93 PDB:4BBR PDB:4BBS PDBsum:1I3Q PDBsum:1I50
PDBsum:1I6H PDBsum:1K83 PDBsum:1NIK PDBsum:1NT9 PDBsum:1PQV
PDBsum:1R5U PDBsum:1R9S PDBsum:1R9T PDBsum:1SFO PDBsum:1TWA
PDBsum:1TWC PDBsum:1TWF PDBsum:1TWG PDBsum:1TWH PDBsum:1WCM
PDBsum:1Y1V PDBsum:1Y1W PDBsum:1Y1Y PDBsum:1Y77 PDBsum:2B63
PDBsum:2B8K PDBsum:2E2H PDBsum:2E2I PDBsum:2E2J PDBsum:2JA5
PDBsum:2JA6 PDBsum:2JA7 PDBsum:2JA8 PDBsum:2NVQ PDBsum:2NVT
PDBsum:2NVX PDBsum:2NVY PDBsum:2NVZ PDBsum:2R7Z PDBsum:2R92
PDBsum:2R93 PDBsum:2VUM PDBsum:2YU9 PDBsum:3CQZ PDBsum:3FKI
PDBsum:3GTG PDBsum:3GTJ PDBsum:3GTK PDBsum:3GTL PDBsum:3GTM
PDBsum:3GTO PDBsum:3GTP PDBsum:3GTQ PDBsum:3H3V PDBsum:3HOU
PDBsum:3HOV PDBsum:3HOW PDBsum:3HOX PDBsum:3HOY PDBsum:3HOZ
PDBsum:3I4M PDBsum:3I4N PDBsum:3K1F PDBsum:3K7A PDBsum:3M3Y
PDBsum:3M4O PDBsum:3PO2 PDBsum:3PO3 PDBsum:3QT1 PDBsum:3RZD
PDBsum:3RZO PDBsum:3S14 PDBsum:3S15 PDBsum:3S16 PDBsum:3S17
PDBsum:3S1M PDBsum:3S1N PDBsum:3S1Q PDBsum:3S1R PDBsum:3S2D
PDBsum:3S2H PDBsum:4A3B PDBsum:4A3C PDBsum:4A3D PDBsum:4A3E
PDBsum:4A3F PDBsum:4A3G PDBsum:4A3I PDBsum:4A3J PDBsum:4A3K
PDBsum:4A3L PDBsum:4A3M PDBsum:4A93 PDBsum:4BBR PDBsum:4BBS
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 OrthoDB:EOG4J14H5
EMBL:X03128 EMBL:Z74188 PIR:S67686 RefSeq:NP_010141.1 PDB:2L0I
PDBsum:2L0I ProteinModelPortal:P04050 SMR:P04050 DIP:DIP-611N
IntAct:P04050 MINT:MINT-432838 STRING:P04050 PaxDb:P04050
PeptideAtlas:P04050 EnsemblFungi:YDL140C GeneID:851415
KEGG:sce:YDL140C CYGD:YDL140c GeneTree:ENSGT00700000105212
EvolutionaryTrace:P04050 NextBio:968606 ArrayExpress:P04050
Genevestigator:P04050 GermOnline:YDL140C Uniprot:P04050
Length = 1733
Score = 370 (135.3 bits), Expect = 8.8e-79, Sum P(4) = 8.8e-79
Identities = 73/134 (54%), Positives = 96/134 (71%)
Query: 295 NNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFV 354
NN++ MV +G+KGS +N Q+S +GQ +EGKR A RTLP F + SP + GFV
Sbjct: 741 NNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFV 800
Query: 355 DGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSD 414
+ ++ G+ PQEFFFH M GREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S
Sbjct: 801 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSL 860
Query: 415 LSLIQVLYGEDGLD 428
++IQ +YGEDG+D
Sbjct: 861 GNVIQFIYGEDGMD 874
Score = 225 (84.3 bits), Expect = 8.8e-79, Sum P(4) = 8.8e-79
Identities = 52/110 (47%), Positives = 70/110 (63%)
Query: 568 LLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIK 627
L S+ +PGE VGVLAAQSIGEP+TQMTLNTFHFAG VT G+PRL+EIL +A K +K
Sbjct: 1054 LRSVVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVA-KNMK 1112
Query: 628 TPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEP 677
TPS+ + P +++A + ++ T L+ V I + P+P
Sbjct: 1113 TPSLTVYLEPGHAADQEQAKLIRSAIEHTT----LKSVTIASEIYYDPDP 1158
Score = 202 (76.2 bits), Expect = 8.8e-79, Sum P(4) = 8.8e-79
Identities = 60/193 (31%), Positives = 94/193 (48%)
Query: 816 KIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNLFEE-KESKHLLKTDGI 874
KIE N+ ++ V N +V YD+K +PS E KE + +L+TDG+
Sbjct: 1262 KIENTMLENITLRGVENIERVV-MMKYDRK---------VPSPTGEYVKEPEWVLETDGV 1311
Query: 875 NVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSL 934
N++ + + D ++Y N + GIEA + +EV NV A G V+ RH++L
Sbjct: 1312 NLSEVMTVPGI-DPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMAL 1370
Query: 935 VADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVML 993
+ D MT G ++ R+G R N + + +FE +E + +A D R S V+L
Sbjct: 1371 LVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRGVSENVIL 1430
Query: 994 GQECRQGTGLFQL 1006
GQ GTG F +
Sbjct: 1431 GQMAPIGTGAFDV 1443
Score = 194 (73.4 bits), Expect = 8.8e-79, Sum P(4) = 8.8e-79
Identities = 51/139 (36%), Positives = 78/139 (56%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE S L V Q + P+ P G++QD + KL+LRDTF+ + +N++Y +
Sbjct: 498 RAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLYW-VPDW 556
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIIN-------------LTPKDK-VIIRHGELLS 118
+ I T P I KP PLW+GKQ+LS I N L+PKD ++I G+++
Sbjct: 557 DGVIPT--PAIIKPKPLWSGKQILSVAIPNGIHLQRFDEGTTLLSPKDNGMLIIDGQIIF 614
Query: 119 GILDKKQFGSTQYGLVHAV 137
G+++KK GS+ GL+H V
Sbjct: 615 GVVEKKTVGSSNGGLIHVV 633
Score = 107 (42.7 bits), Expect = 1.1e-69, Sum P(4) = 1.1e-69
Identities = 24/87 (27%), Positives = 45/87 (51%)
Query: 139 DTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVG 198
D + I G+++ G+++KK GS+ GL+H V G + L + K+ +L G
Sbjct: 602 DNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVNFWLLHNG 661
Query: 199 FTLGVRDILVRQERDRKRTKIINKARR 225
F+ G+ D + R+ T+ I +A++
Sbjct: 662 FSTGIGDTIADGPTMREITETIAEAKK 688
Score = 46 (21.3 bits), Expect = 6.4e-11, Sum P(2) = 6.4e-11
Identities = 24/90 (26%), Positives = 36/90 (40%)
Query: 590 STQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRL 649
ST+ LN F D +LG E+ I T + +P P P + ++
Sbjct: 203 STEEILNIFKHISVKDFT-SLGF---NEVFSRPEWMILT-CLPVPPPPVRPSISFNESQR 257
Query: 650 AKSMTRITMADVLEKVKIK-EWLEISPEPH 678
+ +AD+L K I E LE + PH
Sbjct: 258 GEDDLTFKLADIL-KANISLETLEHNGAPH 286
>WB|WBGene00000123 [details] [associations]
symbol:ama-1 species:6239 "Caenorhabditis elegans"
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA;IMP] [GO:0009792 "embryo development ending in birth
or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0010458 "exit from mitosis" evidence=IMP]
[GO:0008356 "asymmetric cell division" evidence=IMP] [GO:0032502
"developmental process" evidence=IMP] [GO:0006479 "protein
methylation" evidence=IMP] [GO:0007369 "gastrulation" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0001055 "RNA polymerase II
activity" evidence=IMP] [GO:0042789 "mRNA transcription from RNA
polymerase II promoter" evidence=IMP] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 GO:GO:0005634
GO:GO:0009792 GO:GO:0040010 GO:GO:0007052 GO:GO:0010458
GO:GO:0046872 GO:GO:0003677 GO:GO:0000003 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0006479 GO:GO:0008356 GO:GO:0007369
GO:GO:0042789 EMBL:FO081153 eggNOG:COG0086 GO:GO:0005665
EMBL:M29235 PIR:A34092 PIR:T29959 RefSeq:NP_500523.4 IntAct:P16356
STRING:P16356 PaxDb:P16356 EnsemblMetazoa:F36A4.7.1
EnsemblMetazoa:F36A4.7.2 GeneID:177190 KEGG:cel:CELE_F36A4.7
UCSC:F36A4.7 CTD:247749 WormBase:F36A4.7
GeneTree:ENSGT00700000104490 HOGENOM:HOG000222975 InParanoid:P16356
OMA:KVLPWST NextBio:895720 GO:GO:0001055 Uniprot:P16356
Length = 1856
Score = 356 (130.4 bits), Expect = 4.2e-78, Sum P(4) = 4.2e-78
Identities = 68/134 (50%), Positives = 92/134 (68%)
Query: 295 NNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFV 354
NN + MV SG+KGS +N Q+ +GQ +EGKR RTLP F+ + P + GFV
Sbjct: 758 NNFKSMVVSGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFV 817
Query: 355 DGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSD 414
+ ++ G+ P EFFFH M GREGLIDTAVKT+ +GY+QR L+K +E + V+YD TVR+S
Sbjct: 818 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSL 877
Query: 415 LSLIQVLYGEDGLD 428
++Q+ YGEDGLD
Sbjct: 878 AQMVQLRYGEDGLD 891
Score = 221 (82.9 bits), Expect = 4.2e-78, Sum P(4) = 4.2e-78
Identities = 53/131 (40%), Positives = 76/131 (58%)
Query: 547 TKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDM 606
TK + ++ D I + ++A PGE VG LAAQS+GEP+TQMTLNTFH+AG
Sbjct: 1050 TKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAK 1109
Query: 607 NVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVK 666
NVTLG+PRL+EI+ ++ K +KTPS+ + K +KA + + T L+KV
Sbjct: 1110 NVTLGVPRLKEIINVS-KTLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTT----LKKVT 1164
Query: 667 IKEWLEISPEP 677
+ P+P
Sbjct: 1165 CNTAIYYDPDP 1175
Score = 212 (79.7 bits), Expect = 4.2e-78, Sum P(4) = 4.2e-78
Identities = 70/215 (32%), Positives = 103/215 (47%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE + V Q + P+ P+ G++QD + + ++ RD F+ M+L L L
Sbjct: 506 RAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFIDWPFMMDL----LMYL 561
Query: 73 NTEIRTLP-PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR-HGELLSGILDKKQFGSTQ 130
T +P P I KP PLWTGKQV S +I P + ++R H S D + G
Sbjct: 562 PTWDGKVPQPAILKPKPLWTGKQVFSLII----PGNVNVLRTH----STHPDSEDSGP-- 611
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLF 190
Y + + DT V I HGELLSGI+ K G + L+H V G E A + S + +
Sbjct: 612 YKWI-SPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTVI 670
Query: 191 TVYLQRVGFTLGVRDILVRQERDRKRTKIINKARR 225
+L R G T+G+ D + Q I KA++
Sbjct: 671 NAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQ 705
Score = 198 (74.8 bits), Expect = 4.2e-78, Sum P(4) = 4.2e-78
Identities = 51/157 (32%), Positives = 84/157 (53%)
Query: 851 KLLFLPSNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANR 910
+++ P F+ + +L+TDG + + R + D + NDI + GIEA +
Sbjct: 1311 RIIITPEGGFKSV-ADWILETDGTALLRVLSERQI-DPVRTTSNDICEIFEVLGIEAVRK 1368
Query: 911 VIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPL 969
I RE+ NV + G V+ RHL+L+ D MT G +A+ R+GI R + + +FE +
Sbjct: 1369 AIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETV 1428
Query: 970 EKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+ + +A++ ED ++ S +MLGQ R GTG F L
Sbjct: 1429 DILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDL 1465
Score = 38 (18.4 bits), Expect = 5.0e-59, Sum P(4) = 5.0e-59
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 548 KGRTDASHVDKFYDMIFYK----NLLS-LANPGENVGVLAAQSIGEPST 591
KG VDK D +F + N+LS L G + ++ + +P+T
Sbjct: 1260 KGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQG--IPAISKVYMNQPNT 1306
>UNIPROTKB|P16356 [details] [associations]
symbol:ama-1 "DNA-directed RNA polymerase II subunit RPB1"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 GO:GO:0005634 GO:GO:0009792
GO:GO:0040010 GO:GO:0007052 GO:GO:0010458 GO:GO:0046872
GO:GO:0003677 GO:GO:0000003 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0006479 GO:GO:0008356 GO:GO:0007369 GO:GO:0042789
EMBL:FO081153 eggNOG:COG0086 GO:GO:0005665 EMBL:M29235 PIR:A34092
PIR:T29959 RefSeq:NP_500523.4 IntAct:P16356 STRING:P16356
PaxDb:P16356 EnsemblMetazoa:F36A4.7.1 EnsemblMetazoa:F36A4.7.2
GeneID:177190 KEGG:cel:CELE_F36A4.7 UCSC:F36A4.7 CTD:247749
WormBase:F36A4.7 GeneTree:ENSGT00700000104490 HOGENOM:HOG000222975
InParanoid:P16356 OMA:KVLPWST NextBio:895720 GO:GO:0001055
Uniprot:P16356
Length = 1856
Score = 356 (130.4 bits), Expect = 4.2e-78, Sum P(4) = 4.2e-78
Identities = 68/134 (50%), Positives = 92/134 (68%)
Query: 295 NNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFV 354
NN + MV SG+KGS +N Q+ +GQ +EGKR RTLP F+ + P + GFV
Sbjct: 758 NNFKSMVVSGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFV 817
Query: 355 DGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSD 414
+ ++ G+ P EFFFH M GREGLIDTAVKT+ +GY+QR L+K +E + V+YD TVR+S
Sbjct: 818 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSL 877
Query: 415 LSLIQVLYGEDGLD 428
++Q+ YGEDGLD
Sbjct: 878 AQMVQLRYGEDGLD 891
Score = 221 (82.9 bits), Expect = 4.2e-78, Sum P(4) = 4.2e-78
Identities = 53/131 (40%), Positives = 76/131 (58%)
Query: 547 TKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDM 606
TK + ++ D I + ++A PGE VG LAAQS+GEP+TQMTLNTFH+AG
Sbjct: 1050 TKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAK 1109
Query: 607 NVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVK 666
NVTLG+PRL+EI+ ++ K +KTPS+ + K +KA + + T L+KV
Sbjct: 1110 NVTLGVPRLKEIINVS-KTLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTT----LKKVT 1164
Query: 667 IKEWLEISPEP 677
+ P+P
Sbjct: 1165 CNTAIYYDPDP 1175
Score = 212 (79.7 bits), Expect = 4.2e-78, Sum P(4) = 4.2e-78
Identities = 70/215 (32%), Positives = 103/215 (47%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE + V Q + P+ P+ G++QD + + ++ RD F+ M+L L L
Sbjct: 506 RAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFIDWPFMMDL----LMYL 561
Query: 73 NTEIRTLP-PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR-HGELLSGILDKKQFGSTQ 130
T +P P I KP PLWTGKQV S +I P + ++R H S D + G
Sbjct: 562 PTWDGKVPQPAILKPKPLWTGKQVFSLII----PGNVNVLRTH----STHPDSEDSGP-- 611
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLF 190
Y + + DT V I HGELLSGI+ K G + L+H V G E A + S + +
Sbjct: 612 YKWI-SPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTVI 670
Query: 191 TVYLQRVGFTLGVRDILVRQERDRKRTKIINKARR 225
+L R G T+G+ D + Q I KA++
Sbjct: 671 NAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQ 705
Score = 198 (74.8 bits), Expect = 4.2e-78, Sum P(4) = 4.2e-78
Identities = 51/157 (32%), Positives = 84/157 (53%)
Query: 851 KLLFLPSNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANR 910
+++ P F+ + +L+TDG + + R + D + NDI + GIEA +
Sbjct: 1311 RIIITPEGGFKSV-ADWILETDGTALLRVLSERQI-DPVRTTSNDICEIFEVLGIEAVRK 1368
Query: 911 VIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPL 969
I RE+ NV + G V+ RHL+L+ D MT G +A+ R+GI R + + +FE +
Sbjct: 1369 AIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETV 1428
Query: 970 EKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
+ + +A++ ED ++ S +MLGQ R GTG F L
Sbjct: 1429 DILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDL 1465
Score = 38 (18.4 bits), Expect = 5.0e-59, Sum P(4) = 5.0e-59
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 548 KGRTDASHVDKFYDMIFYK----NLLS-LANPGENVGVLAAQSIGEPST 591
KG VDK D +F + N+LS L G + ++ + +P+T
Sbjct: 1260 KGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQG--IPAISKVYMNQPNT 1306
>UNIPROTKB|A4IF62 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase III subunit
RPC1" species:9913 "Bos taurus" [GO:0045087 "innate immune
response" evidence=ISS] [GO:0032728 "positive regulation of
interferon-beta production" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0045087 GO:GO:0006351
GO:GO:0051607 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
GO:GO:0032728 KO:K03018 eggNOG:COG0086 GO:GO:0032549
GeneTree:ENSGT00700000104490 HOVERGEN:HBG004339 EMBL:BC134422
IPI:IPI00701819 RefSeq:NP_001077219.1 UniGene:Bt.58772
ProteinModelPortal:A4IF62 STRING:A4IF62 PRIDE:A4IF62
Ensembl:ENSBTAT00000017638 GeneID:540308 KEGG:bta:540308 CTD:11128
HOGENOM:HOG000222974 InParanoid:A4IF62 OMA:PRRPLIF
OrthoDB:EOG4QVCB4 NextBio:20878554 ArrayExpress:A4IF62
PANTHER:PTHR19376:SF15 Uniprot:A4IF62
Length = 1390
Score = 324 (119.1 bits), Expect = 7.6e-78, Sum P(4) = 7.6e-78
Identities = 75/178 (42%), Positives = 102/178 (57%)
Query: 272 LDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAM 331
L + ++ CL E ++ +N+ M G+KGS +N Q+ +GQ + G R
Sbjct: 756 LSVIRDHAGSACLRE--LDK--SNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPD 811
Query: 332 MVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYL 391
R+LP F + P A GFV F +G+ P EFFFH MAGREGL+DTAVKT+ +GY+
Sbjct: 812 GFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYM 871
Query: 392 QRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDK-QFSFLEDNIK 448
QR LVK LE L YD+TVR S +IQ +YG DGLD + + +F + DNIK
Sbjct: 872 QRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIK 929
Score = 268 (99.4 bits), Expect = 7.6e-78, Sum P(4) = 7.6e-78
Identities = 72/212 (33%), Positives = 111/212 (52%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF RA+ ++ L
Sbjct: 516 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 575
Query: 73 NTEI--RTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ +I R PPTI KP+ LWTGKQ+ S + L P D +R G KQ+
Sbjct: 576 DEKIKVRLPPPTILKPVTLWTGKQIFSVI---LRPSDDNPVRANLRTKG----KQYCGRG 628
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L V D++VTI++ EL+SG +DK GS ++ + + + G A +S LA+L
Sbjct: 629 EDL--CVNDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARL 686
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIIN 221
VYL GF++G+ D+ Q + + +++N
Sbjct: 687 APVYLSNRGFSIGIGDVTPGQGLLKAKYELLN 718
Score = 213 (80.0 bits), Expect = 7.6e-78, Sum P(4) = 7.6e-78
Identities = 46/96 (47%), Positives = 61/96 (63%)
Query: 535 ISEN-LADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQM 593
I++N + V Y R + ++KF + K + + PG VG L AQSIGEP TQM
Sbjct: 989 INDNGTTEPRVLYQLDRITPTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQM 1048
Query: 594 TLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
TL TFHFAG MN+TLG+PR++EI+ A+KAI TP
Sbjct: 1049 TLKTFHFAGVASMNITLGVPRIKEIIN-ASKAISTP 1083
Score = 175 (66.7 bits), Expect = 7.6e-78, Sum P(4) = 7.6e-78
Identities = 41/147 (27%), Positives = 79/147 (53%)
Query: 864 ESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
+ K+ L +G N+ + H + + N+ + + T GIEAA II E++ +
Sbjct: 1220 KEKYKLLVEGDNLRAVMA-THGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNH 1278
Query: 924 GIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGRED 982
G+ +D RH+ L++D MT+ G + + R G+ ++ S + +FE + + A+ G++D
Sbjct: 1279 GMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKD 1338
Query: 983 SLRAPSARVMLGQECRQGTGLFQLRNR 1009
S+ S +++G GTGLF+L ++
Sbjct: 1339 SVCGVSECIIMGIPMNIGTGLFKLLHK 1365
Score = 53 (23.7 bits), Expect = 4.5e-26, Sum P(3) = 4.5e-26
Identities = 32/130 (24%), Positives = 56/130 (43%)
Query: 188 KLFTVYLQRVGFT-LGVRDILVR-QERDRKRTKIINKARRLGTEAACNALGLPLD----- 240
K F YL+R G T L R + + ++ RK+ + GT C L + +
Sbjct: 123 KQFLDYLKRPGLTYLQKRGLKKKISDKCRKKNTCHHCGAFNGTVKKCGLLKIIHEKYKTN 182
Query: 241 ---TDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNL 297
DP I+SS LQ +I +++ + LL K N+N + + L + PA ++
Sbjct: 183 KKVVDP-IVSSFLQSFETAIEH-----NKEVEPLLGKAQENLNPLVVLN-LFKRIPAEDI 235
Query: 298 QFMVESGAKG 307
++ + G
Sbjct: 236 PLLLMNPEAG 245
Score = 45 (20.9 bits), Expect = 1.3e-54, Sum P(4) = 1.3e-54
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 35 LSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCILNTEIRTLP 80
L+ +I+ H ISGAK + + +++ L Q +N+E+ +P
Sbjct: 289 LNDVIKKHRISGAKTQM---IMEDWDFLQL--QCALYINSELSGIP 329
Score = 38 (18.4 bits), Expect = 6.9e-54, Sum P(4) = 6.9e-54
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 91 TGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQ 125
T K+V+ ++ + + I H + + +L K Q
Sbjct: 181 TNKKVVDPIVSSFLQSFETAIEHNKEVEPLLGKAQ 215
Score = 37 (18.1 bits), Expect = 2.3e-30, Sum P(3) = 2.3e-30
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 269 KSLLDKVTNNINQVCLPE 286
K+LL +++ I +V LP+
Sbjct: 1107 KTLLGEISEYIEEVFLPD 1124
>ASPGD|ASPL0000054301 [details] [associations]
symbol:AN0809 species:162425 "Emericella nidulans"
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 EMBL:BN001308 GO:GO:0003677
GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:AACD01000013 GO:GO:0003899 eggNOG:COG0086 GO:GO:0005665
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 OrthoDB:EOG4J14H5
RefSeq:XP_658413.1 STRING:Q5BF71 EnsemblFungi:CADANIAT00001852
GeneID:2876587 KEGG:ani:AN0809.2 Uniprot:Q5BF71
Length = 1745
Score = 355 (130.0 bits), Expect = 1.0e-77, Sum P(4) = 1.0e-77
Identities = 73/134 (54%), Positives = 93/134 (69%)
Query: 295 NNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFV 354
NN M SG+KGS +N Q++ ++GQ +EGKR A RTLP F + SP + GFV
Sbjct: 761 NNAVQMSRSGSKGSIINISQMTAVVGQQMVEGKRIAFGFKYRTLPHFTKDDYSPESRGFV 820
Query: 355 DGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSD 414
+ ++ G+ P EFFFH MAGREGLIDTAVKT+ +GY+QR LVK LE + V YD TVR+S
Sbjct: 821 ENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSL 880
Query: 415 LSLIQVLYGEDGLD 428
+IQ +YGEDGLD
Sbjct: 881 GDIIQFIYGEDGLD 894
Score = 244 (91.0 bits), Expect = 1.0e-77, Sum P(4) = 1.0e-77
Identities = 58/125 (46%), Positives = 77/125 (61%)
Query: 543 VVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAG 602
V +Y+ + HV + F K + A PGE VGVLAAQSIGEP+TQMTLNTFHFAG
Sbjct: 1052 VTQYSMNKLAFQHVLGAIESRFAK---AAAAPGEMVGVLAAQSIGEPATQMTLNTFHFAG 1108
Query: 603 RGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVL 662
NVTLG+PRL+EIL +AT IKTPSM + P+ ++ A +L ++ + +
Sbjct: 1109 VSSKNVTLGVPRLKEILNVATN-IKTPSMTVYQEPERAHDKEGAKQLRSAVEYTNLRSIT 1167
Query: 663 EKVKI 667
E +I
Sbjct: 1168 EATEI 1172
Score = 218 (81.8 bits), Expect = 1.0e-77, Sum P(4) = 1.0e-77
Identities = 60/217 (27%), Positives = 110/217 (50%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + P+ PL G++QD + K+ RD FLT+ + MN++ + +
Sbjct: 512 RAELQQLALVPQNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNIM---MWVP 568
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + PP I+KP P WTGKQ++S V P ++R G S +Y
Sbjct: 569 DWDGVIPPPAIFKPRPRWTGKQMISMVF----PSGLNLMRTDS--KGAAPS----SEKYS 618
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTV 192
+ D +V I G+L+ G+L+KK G++ G++H +++ +GA+ A++ + +
Sbjct: 619 PLQ---DGNVLIHEGQLMYGMLNKKIVGASGGGVIHIIFNEYGADAAVAFFNGAQAIVNY 675
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTE 229
+L GF++G+ D + + + + + K R+L E
Sbjct: 676 WLLHNGFSIGIGDTIPNDQTIQAIEECVRK-RKLEVE 711
Score = 165 (63.1 bits), Expect = 1.0e-77, Sum P(4) = 1.0e-77
Identities = 40/122 (32%), Positives = 63/122 (51%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D + Y N + +GIEAA ++RE V + G V+ RHL+L+ D MT G
Sbjct: 1348 VDATRTYSNQFIEVFEVFGIEAARAAVLREFTVVLSFDGSYVNHRHLALLVDVMTMRGYL 1407
Query: 946 VAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
+ R+GI R + + + +FE +E + +A+ G D R S ++LGQ GTG F
Sbjct: 1408 TPVTRHGINRADNGALMRCSFEETVEILLEAAAFGELDDCRGVSENLILGQMAPAGTGEF 1467
Query: 1005 QL 1006
+
Sbjct: 1468 DI 1469
Score = 39 (18.8 bits), Expect = 2.3e-56, Sum P(4) = 2.3e-56
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 813 ERFKIEFRDSTNVFVKDVVNQHN 835
ERF+I+ D DV+ Q N
Sbjct: 915 ERFRIDLMDPALSLGPDVLEQAN 937
>UNIPROTKB|J9P629 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 KO:K03018 GO:GO:0032549
GeneTree:ENSGT00700000104490 CTD:11128 OMA:PRRPLIF
PANTHER:PTHR19376:SF15 EMBL:AAEX03002853 RefSeq:XP_536399.2
Ensembl:ENSCAFT00000047369 GeneID:479256 KEGG:cfa:479256
Uniprot:J9P629
Length = 1390
Score = 324 (119.1 bits), Expect = 1.2e-77, Sum P(4) = 1.2e-77
Identities = 75/178 (42%), Positives = 102/178 (57%)
Query: 272 LDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAM 331
L + ++ CL E ++ +N+ M G+KGS +N Q+ +GQ + G R
Sbjct: 756 LSVIRDHAGSACLRE--LDK--SNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPD 811
Query: 332 MVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYL 391
R+LP F + P A GFV F +G+ P EFFFH MAGREGL+DTAVKT+ +GY+
Sbjct: 812 GFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYM 871
Query: 392 QRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDK-QFSFLEDNIK 448
QR LVK LE L YD+TVR S +IQ +YG DGLD + + +F + DNIK
Sbjct: 872 QRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIK 929
Score = 266 (98.7 bits), Expect = 1.2e-77, Sum P(4) = 1.2e-77
Identities = 71/212 (33%), Positives = 111/212 (52%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF RA+ ++ L
Sbjct: 516 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 575
Query: 73 NTEIRTL--PPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ +I+ PPTI KP+ LWTGKQ+ S + L P D +R G KQ+
Sbjct: 576 DEKIKVHLPPPTILKPVTLWTGKQIFSVI---LRPSDDNPVRANLRTKG----KQYCGKG 628
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L V D++VTI++ EL+SG +DK GS ++ + + + G A +S LA+L
Sbjct: 629 EDL--CVNDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARL 686
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIIN 221
VYL GF++G+ D+ Q + + +++N
Sbjct: 687 APVYLSNRGFSIGIGDVTPGQGLLKAKYELLN 718
Score = 213 (80.0 bits), Expect = 1.2e-77, Sum P(4) = 1.2e-77
Identities = 46/96 (47%), Positives = 61/96 (63%)
Query: 535 ISEN-LADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQM 593
I++N + V Y R + ++KF + K + + PG VG L AQSIGEP TQM
Sbjct: 989 INDNGTTEPRVLYQLDRITPTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQM 1048
Query: 594 TLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
TL TFHFAG MN+TLG+PR++EI+ A+KAI TP
Sbjct: 1049 TLKTFHFAGVASMNITLGVPRIKEIIN-ASKAISTP 1083
Score = 175 (66.7 bits), Expect = 1.2e-77, Sum P(4) = 1.2e-77
Identities = 41/147 (27%), Positives = 79/147 (53%)
Query: 864 ESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
+ K+ L +G N+ + H + + N+ + + T GIEAA II E++ +
Sbjct: 1220 KEKYKLLVEGDNLRAVMA-THGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNH 1278
Query: 924 GIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGRED 982
G+ +D RH+ L++D MT+ G + + R G+ ++ S + +FE + + A+ G++D
Sbjct: 1279 GMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKD 1338
Query: 983 SLRAPSARVMLGQECRQGTGLFQLRNR 1009
S+ S +++G GTGLF+L ++
Sbjct: 1339 SVCGVSECIIMGIPMNIGTGLFKLLHK 1365
Score = 49 (22.3 bits), Expect = 1.2e-25, Sum P(3) = 1.2e-25
Identities = 26/125 (20%), Positives = 54/125 (43%)
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTK-IINKARRL-GTEAACNALGL---PLDTD 242
K F YL+R G T + L ++ D+ R K I + GT C L + T+
Sbjct: 123 KQFLDYLKRPGLTYLQKRGLKKKISDKCRKKNICHYCGAFNGTVKKCGLLKIIHEKYKTN 182
Query: 243 PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
+++ + S + + +++ + LL + N+N + + L + PA ++ ++
Sbjct: 183 KKVVDPIVSNFLQSF-ETAIEHNKEVEPLLGRAQENLNPLVVLN-LFKRIPAEDVPLLLM 240
Query: 303 SGAKG 307
+ G
Sbjct: 241 NPEAG 245
Score = 45 (20.9 bits), Expect = 1.3e-54, Sum P(4) = 1.3e-54
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 35 LSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCILNTEIRTLP 80
L+ +I+ H ISGAK + + +++ L Q +N+E+ +P
Sbjct: 289 LNDVIKKHRISGAKTQM---IMEDWDFLQL--QCALYINSELSGIP 329
Score = 40 (19.1 bits), Expect = 4.3e-54, Sum P(4) = 4.3e-54
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 91 TGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQ 125
T K+V+ ++ N + I H + + +L + Q
Sbjct: 181 TNKKVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQ 215
Score = 37 (18.1 bits), Expect = 3.9e-30, Sum P(3) = 3.9e-30
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 269 KSLLDKVTNNINQVCLPE 286
K+LL +++ I +V LP+
Sbjct: 1107 KTLLGEISEYIEEVFLPD 1124
>UNIPROTKB|O14802 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase III subunit
RPC1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0051607
"defense response to virus" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=NAS] [GO:0006351 "transcription, DNA-dependent"
evidence=NAS] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=NAS] [GO:0045087 "innate immune response" evidence=IMP]
[GO:0032728 "positive regulation of interferon-beta production"
evidence=IMP] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=TAS]
[GO:0006385 "transcription elongation from RNA polymerase III
promoter" evidence=TAS] [GO:0006386 "termination of RNA polymerase
III transcription" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
EMBL:CH471083 GO:GO:0045087 GO:GO:0051607 Gene3D:2.40.40.20
InterPro:IPR009010 Reactome:REACT_1788 GO:GO:0005666 GO:GO:0003899
GO:GO:0032728 KO:K03018 GO:GO:0006386 GO:GO:0006385 eggNOG:COG0086
GO:GO:0032549 HOVERGEN:HBG004339 CTD:11128 HOGENOM:HOG000222974
OMA:PRRPLIF OrthoDB:EOG4QVCB4 PANTHER:PTHR19376:SF15 EMBL:AF021351
EMBL:AL512628 EMBL:BC041089 EMBL:AY091459 IPI:IPI00024163
RefSeq:NP_008986.2 UniGene:Hs.436896 ProteinModelPortal:O14802
SMR:O14802 IntAct:O14802 STRING:O14802 PhosphoSite:O14802
PaxDb:O14802 PRIDE:O14802 Ensembl:ENST00000372371 GeneID:11128
KEGG:hsa:11128 UCSC:uc001jzn.3 GeneCards:GC10M079729
HGNC:HGNC:30074 HPA:HPA037926 MIM:607694 MIM:614258
neXtProt:NX_O14802 Orphanet:88637 Orphanet:77295
PharmGKB:PA134900426 InParanoid:O14802 PhylomeDB:O14802
ChiTaRS:POLR3A GenomeRNAi:11128 NextBio:42292 ArrayExpress:O14802
Bgee:O14802 CleanEx:HS_POLR3A Genevestigator:O14802
GermOnline:ENSG00000148606 Uniprot:O14802
Length = 1390
Score = 324 (119.1 bits), Expect = 1.6e-77, Sum P(4) = 1.6e-77
Identities = 75/178 (42%), Positives = 102/178 (57%)
Query: 272 LDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAM 331
L + ++ CL E ++ +N+ M G+KGS +N Q+ +GQ + G R
Sbjct: 756 LSVIRDHAGSACLRE--LDK--SNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPD 811
Query: 332 MVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYL 391
R+LP F + P A GFV F +G+ P EFFFH MAGREGL+DTAVKT+ +GY+
Sbjct: 812 GFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYM 871
Query: 392 QRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDK-QFSFLEDNIK 448
QR LVK LE L YD+TVR S +IQ +YG DGLD + + +F + DNIK
Sbjct: 872 QRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIK 929
Score = 264 (98.0 bits), Expect = 1.6e-77, Sum P(4) = 1.6e-77
Identities = 71/212 (33%), Positives = 110/212 (51%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF RA+ ++ L
Sbjct: 516 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 575
Query: 73 NTEI--RTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ +I R PPTI KP+ LWTGKQ+ S + L P D +R G KQ+
Sbjct: 576 DEKIKVRLPPPTILKPVTLWTGKQIFSVI---LRPSDDNPVRANLRTKG----KQYCGKG 628
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L D++VTI++ EL+SG +DK GS ++ + + + G A +S LA+L
Sbjct: 629 EDL--CANDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARL 686
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIIN 221
VYL GF++G+ D+ Q + + +++N
Sbjct: 687 APVYLSNRGFSIGIGDVTPGQGLLKAKYELLN 718
Score = 214 (80.4 bits), Expect = 1.6e-77, Sum P(4) = 1.6e-77
Identities = 47/96 (48%), Positives = 61/96 (63%)
Query: 535 ISEN-LADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQM 593
I++N + V Y R + V+KF + K + + PG VG L AQSIGEP TQM
Sbjct: 989 INDNGTTEPRVLYQLDRITPTQVEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQM 1048
Query: 594 TLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
TL TFHFAG MN+TLG+PR++EI+ A+KAI TP
Sbjct: 1049 TLKTFHFAGVASMNITLGVPRIKEIIN-ASKAISTP 1083
Score = 175 (66.7 bits), Expect = 1.6e-77, Sum P(4) = 1.6e-77
Identities = 41/147 (27%), Positives = 79/147 (53%)
Query: 864 ESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
+ K+ L +G N+ + H + + N+ + + T GIEAA II E++ +
Sbjct: 1220 KEKYKLLVEGDNLRAVMA-THGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNH 1278
Query: 924 GIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGRED 982
G+ +D RH+ L++D MT+ G + + R G+ ++ S + +FE + + A+ G++D
Sbjct: 1279 GMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKD 1338
Query: 983 SLRAPSARVMLGQECRQGTGLFQLRNR 1009
S+ S +++G GTGLF+L ++
Sbjct: 1339 SVCGVSECIIMGIPMNIGTGLFKLLHK 1365
Score = 50 (22.7 bits), Expect = 7.1e-26, Sum P(3) = 7.1e-26
Identities = 26/125 (20%), Positives = 54/125 (43%)
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTK-IINKARRL-GTEAACNALGL---PLDTD 242
K F YL+R G T + L ++ D+ R K I + GT C L + T+
Sbjct: 123 KQFLDYLKRPGLTYLQKRGLKKKISDKCRKKNICHHCGAFNGTVKKCGLLKIIHEKYKTN 182
Query: 243 PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
+++ + S + + +++ + LL + N+N + + L + PA ++ ++
Sbjct: 183 KKVVDPIVSNFLQSF-ETAIEHNKEVEPLLGRAQENLNPLVVLN-LFKRIPAEDVPLLLM 240
Query: 303 SGAKG 307
+ G
Sbjct: 241 NPEAG 245
Score = 45 (20.9 bits), Expect = 1.0e-54, Sum P(4) = 1.0e-54
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 35 LSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCILNTEIRTLP 80
L+ +I+ H ISGAK + + +++ L Q +N+E+ +P
Sbjct: 289 LNDVIKKHRISGAKTQM---IMEDWDFLQL--QCALYINSELSGIP 329
Score = 40 (19.1 bits), Expect = 3.4e-54, Sum P(4) = 3.4e-54
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 91 TGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQ 125
T K+V+ ++ N + I H + + +L + Q
Sbjct: 181 TNKKVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQ 215
Score = 37 (18.1 bits), Expect = 6.4e-30, Sum P(3) = 6.4e-30
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 269 KSLLDKVTNNINQVCLPE 286
K+LL +++ I +V LP+
Sbjct: 1107 KTLLGEISEYIEEVFLPD 1124
>UNIPROTKB|F1S2E6 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0045087 "innate immune response" evidence=IEA]
[GO:0032728 "positive regulation of interferon-beta production"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0045087 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 GO:GO:0032728 KO:K03018 GO:GO:0032549
GeneTree:ENSGT00700000104490 OMA:PRRPLIF PANTHER:PTHR19376:SF15
EMBL:CU407090 RefSeq:XP_001929395.1 Ensembl:ENSSSCT00000011305
GeneID:100156229 KEGG:ssc:100156229 Uniprot:F1S2E6
Length = 1390
Score = 324 (119.1 bits), Expect = 4.1e-77, Sum P(4) = 4.1e-77
Identities = 75/178 (42%), Positives = 102/178 (57%)
Query: 272 LDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAM 331
L + ++ CL E ++ +N+ M G+KGS +N Q+ +GQ + G R
Sbjct: 756 LSVIRDHAGSACLRE--LDK--SNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPD 811
Query: 332 MVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYL 391
R+LP F + P A GFV F +G+ P EFFFH MAGREGL+DTAVKT+ +GY+
Sbjct: 812 GFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYM 871
Query: 392 QRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDK-QFSFLEDNIK 448
QR LVK LE L YD+TVR S +IQ +YG DGLD + + +F + DNIK
Sbjct: 872 QRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIK 929
Score = 262 (97.3 bits), Expect = 4.1e-77, Sum P(4) = 4.1e-77
Identities = 73/216 (33%), Positives = 111/216 (51%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF RA+ ++ L
Sbjct: 516 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 575
Query: 73 NTEI--RTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ +I R PPTI KP+ LWTGKQV S + L P +R G KQ+
Sbjct: 576 DEKIKVRLPPPTILKPVTLWTGKQVFSVI---LRPSYDNPVRANLRTKG----KQYCGKG 628
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L V D++VTI++ EL+SG +DK GS ++ + + + G A +S LA+L
Sbjct: 629 EDL--CVNDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARL 686
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARR 225
VYL GF++G+ D+ Q + + +++N R
Sbjct: 687 APVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYR 722
Score = 213 (80.0 bits), Expect = 4.1e-77, Sum P(4) = 4.1e-77
Identities = 46/96 (47%), Positives = 61/96 (63%)
Query: 535 ISEN-LADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQM 593
I++N + V Y R + ++KF + K + + PG VG L AQSIGEP TQM
Sbjct: 989 INDNGTTEPRVLYQLDRITPTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQM 1048
Query: 594 TLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
TL TFHFAG MN+TLG+PR++EI+ A+KAI TP
Sbjct: 1049 TLKTFHFAGVASMNITLGVPRIKEIIN-ASKAISTP 1083
Score = 174 (66.3 bits), Expect = 4.1e-77, Sum P(4) = 4.1e-77
Identities = 41/147 (27%), Positives = 79/147 (53%)
Query: 864 ESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
+ K+ L +G N+ + H + + N+ + + T GIEAA II E++ +
Sbjct: 1220 KEKYKLLVEGDNLRAVMA-THGVKGTQTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNH 1278
Query: 924 GIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGRED 982
G+ +D RH+ L++D MT+ G + + R G+ ++ S + +FE + + A+ G++D
Sbjct: 1279 GMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKD 1338
Query: 983 SLRAPSARVMLGQECRQGTGLFQLRNR 1009
S+ S +++G GTGLF+L ++
Sbjct: 1339 SVCGVSECIIMGIPMNIGTGLFKLLHK 1365
Score = 50 (22.7 bits), Expect = 1.2e-25, Sum P(3) = 1.2e-25
Identities = 25/125 (20%), Positives = 54/125 (43%)
Query: 188 KLFTVYLQRVGFT-LGVRDILVR-QERDRKRTKIINKARRLGTEAACNALGL---PLDTD 242
K F YL+R G T L R + + ++ RK+ + GT C L + T+
Sbjct: 123 KQFLDYLKRPGLTYLQKRGLKKKISDKCRKKNTCHHCGAFNGTVKKCGLLKIIHEKYKTN 182
Query: 243 PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
+++ + S + + +++ + LL + N+N + + L + PA ++ ++
Sbjct: 183 KKVVDPIVSNFLQSF-ETAIEHNKEVEPLLGRAQENLNPLVVLN-LFKRIPAEDIPLLLM 240
Query: 303 SGAKG 307
+ G
Sbjct: 241 NPEAG 245
Score = 45 (20.9 bits), Expect = 1.6e-54, Sum P(4) = 1.6e-54
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 35 LSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCILNTEIRTLP 80
L+ +I+ H ISGAK + + +++ L Q +N+E+ +P
Sbjct: 289 LNDVIKKHRISGAKTQM---IMEDWDFLQL--QCALYINSELSGIP 329
Score = 40 (19.1 bits), Expect = 5.4e-54, Sum P(4) = 5.4e-54
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 91 TGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQ 125
T K+V+ ++ N + I H + + +L + Q
Sbjct: 181 TNKKVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQ 215
Score = 37 (18.1 bits), Expect = 1.3e-29, Sum P(3) = 1.3e-29
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 269 KSLLDKVTNNINQVCLPE 286
K+LL +++ I +V LP+
Sbjct: 1107 KTLLGEISEYIEEVFLPD 1124
>UNIPROTKB|Q5ZL98 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase III subunit
RPC1" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 KO:K03018
eggNOG:COG0086 HSSP:P04050 GO:GO:0032549 HOVERGEN:HBG004339
CTD:11128 HOGENOM:HOG000222974 OrthoDB:EOG4QVCB4
PANTHER:PTHR19376:SF15 EMBL:AJ719836 IPI:IPI00580235
RefSeq:NP_001006500.1 UniGene:Gga.11367 ProteinModelPortal:Q5ZL98
STRING:Q5ZL98 PRIDE:Q5ZL98 GeneID:423727 KEGG:gga:423727
InParanoid:Q5ZL98 NextBio:20826153 Uniprot:Q5ZL98
Length = 1390
Score = 323 (118.8 bits), Expect = 4.2e-77, Sum P(4) = 4.2e-77
Identities = 74/178 (41%), Positives = 102/178 (57%)
Query: 272 LDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAM 331
L + ++ CL E ++ +N+ M G+KGS +N Q+ +GQ + G R
Sbjct: 756 LSVIRDHAGSACLRE--LDK--SNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPD 811
Query: 332 MVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYL 391
R+LP F + P A GFV F +G+ P EFFFH MAGREGL+DTAVKT+ +GY+
Sbjct: 812 GFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYM 871
Query: 392 QRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDK-QFSFLEDNIK 448
QR LVK LE L YD+TVR S +IQ +YG DGLD + + +F + DNI+
Sbjct: 872 QRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIR 929
Score = 257 (95.5 bits), Expect = 4.2e-77, Sum P(4) = 4.2e-77
Identities = 68/197 (34%), Positives = 104/197 (52%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF RA+ ++ L
Sbjct: 516 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 575
Query: 73 NTEI--RTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ +I R PP I KP+ LWTGKQV S++ L P D ++ G KQ+
Sbjct: 576 DEKIKVRLPPPAILKPVTLWTGKQVFSSI---LKPSDDCPVKANLRTKG----KQYCGKG 628
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L + D++VTI++ EL+SG +DK GS ++ + + + G A +S LA+L
Sbjct: 629 EDLCYN--DSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQVEAADAMSRLARL 686
Query: 190 FTVYLQRVGFTLGVRDI 206
VYL GF++G+ D+
Sbjct: 687 APVYLSNRGFSIGIGDV 703
Score = 215 (80.7 bits), Expect = 4.2e-77, Sum P(4) = 4.2e-77
Identities = 54/136 (39%), Positives = 80/136 (58%)
Query: 535 ISEN-LADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQM 593
I++N + V Y R + ++KF + K + + PG VG L AQSIGEP TQM
Sbjct: 989 INDNGTTEPRVLYQLDRITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQM 1048
Query: 594 TLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP----SMEIPFLPDMPKLEKKANRL 649
TL TFHFAG MN+TLG+PR++EI+ A+KAI TP ++ PD +L K R+
Sbjct: 1049 TLKTFHFAGVASMNITLGVPRIKEIIN-ASKAISTPIITAQLDKDDDPDFARLVK--GRI 1105
Query: 650 AKSMTRITMADVLEKV 665
K++ +++ +E+V
Sbjct: 1106 EKTLLG-EISEYIEEV 1120
Score = 178 (67.7 bits), Expect = 4.2e-77, Sum P(4) = 4.2e-77
Identities = 42/147 (28%), Positives = 79/147 (53%)
Query: 864 ESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
+ K+ L +G N+ + H + K N+ + + T GIEAA II E++ +
Sbjct: 1220 KEKYKLLVEGDNLRAVMA-THGVKGTKTSSNNTYEVEKTLGIEAARTTIINEIQYTMVNH 1278
Query: 924 GIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGRED 982
G+ +D RH+ L++D MT+ G + + R G+ ++ S + +FE + + A+ G++D
Sbjct: 1279 GMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKD 1338
Query: 983 SLRAPSARVMLGQECRQGTGLFQLRNR 1009
S+ S +++G GTGLF+L ++
Sbjct: 1339 SVCGVSECIIMGIPMNIGTGLFKLLHK 1365
Score = 45 (20.9 bits), Expect = 5.1e-55, Sum P(4) = 5.1e-55
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 35 LSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCILNTEIRTLP 80
L+ +I+ H ISGAK + + +++ L Q +N+E+ +P
Sbjct: 289 LNDVIKKHRISGAKTQM---IMEDWDFLQL--QCALYINSELSGIP 329
Score = 43 (20.2 bits), Expect = 4.2e-30, Sum P(3) = 4.2e-30
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 245 IISSQLQEAYASIPQFRAQID-RQYKSLLDKVTNNINQVCLPE 286
II++QL + P F + R K+LL +++ I +V LP+
Sbjct: 1084 IITAQLDKD--DDPDFARLVKGRIEKTLLGEISEYIEEVFLPD 1124
>UNIPROTKB|F1NIK7 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=IEA] [GO:0045087
"innate immune response" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0045087 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 GO:GO:0032728 GO:GO:0032549
GeneTree:ENSGT00700000104490 OMA:PRRPLIF PANTHER:PTHR19376:SF15
IPI:IPI00580235 EMBL:AADN02027942 EMBL:AADN02027940
EMBL:AADN02027941 Ensembl:ENSGALT00000007929 Uniprot:F1NIK7
Length = 1390
Score = 323 (118.8 bits), Expect = 6.8e-77, Sum P(4) = 6.8e-77
Identities = 74/178 (41%), Positives = 102/178 (57%)
Query: 272 LDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAM 331
L + ++ CL E ++ +N+ M G+KGS +N Q+ +GQ + G R
Sbjct: 756 LSVIRDHAGSACLRE--LDK--SNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPD 811
Query: 332 MVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYL 391
R+LP F + P A GFV F +G+ P EFFFH MAGREGL+DTAVKT+ +GY+
Sbjct: 812 GFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYM 871
Query: 392 QRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDK-QFSFLEDNIK 448
QR LVK LE L YD+TVR S +IQ +YG DGLD + + +F + DNI+
Sbjct: 872 QRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIR 929
Score = 255 (94.8 bits), Expect = 6.8e-77, Sum P(4) = 6.8e-77
Identities = 68/197 (34%), Positives = 103/197 (52%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF RA+ ++ L
Sbjct: 516 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 575
Query: 73 NTEI--RTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ +I R PP I KP+ LWTGKQV S + L P D ++ G KQ+
Sbjct: 576 DEKIKVRLPPPAILKPVTLWTGKQVFSLI---LKPSDDCPVKANLRTKG----KQYCGKG 628
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L + D++VTI++ EL+SG +DK GS ++ + + + G A +S LA+L
Sbjct: 629 EDLCYN--DSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQVEAADAMSRLARL 686
Query: 190 FTVYLQRVGFTLGVRDI 206
VYL GF++G+ D+
Sbjct: 687 APVYLSNRGFSIGIGDV 703
Score = 215 (80.7 bits), Expect = 6.8e-77, Sum P(4) = 6.8e-77
Identities = 54/136 (39%), Positives = 80/136 (58%)
Query: 535 ISEN-LADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQM 593
I++N + V Y R + ++KF + K + + PG VG L AQSIGEP TQM
Sbjct: 989 INDNGTTEPRVLYQLDRITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQM 1048
Query: 594 TLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP----SMEIPFLPDMPKLEKKANRL 649
TL TFHFAG MN+TLG+PR++EI+ A+KAI TP ++ PD +L K R+
Sbjct: 1049 TLKTFHFAGVASMNITLGVPRIKEIIN-ASKAISTPIITAQLDKDDDPDFARLVK--GRI 1105
Query: 650 AKSMTRITMADVLEKV 665
K++ +++ +E+V
Sbjct: 1106 EKTLLG-EISEYIEEV 1120
Score = 178 (67.7 bits), Expect = 6.8e-77, Sum P(4) = 6.8e-77
Identities = 42/147 (28%), Positives = 79/147 (53%)
Query: 864 ESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
+ K+ L +G N+ + H + K N+ + + T GIEAA II E++ +
Sbjct: 1220 KEKYKLLVEGDNLRAVMA-THGVKGTKTSSNNTYEVEKTLGIEAARTTIINEIQYTMVNH 1278
Query: 924 GIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGRED 982
G+ +D RH+ L++D MT+ G + + R G+ ++ S + +FE + + A+ G++D
Sbjct: 1279 GMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKD 1338
Query: 983 SLRAPSARVMLGQECRQGTGLFQLRNR 1009
S+ S +++G GTGLF+L ++
Sbjct: 1339 SVCGVSECIIMGIPMNIGTGLFKLLHK 1365
Score = 45 (20.9 bits), Expect = 5.1e-55, Sum P(4) = 5.1e-55
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 35 LSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCILNTEIRTLP 80
L+ +I+ H ISGAK + + +++ L Q +N+E+ +P
Sbjct: 289 LNDVIKKHRISGAKTQM---IMEDWDFLQL--QCALYINSELSGIP 329
Score = 43 (20.2 bits), Expect = 7.0e-30, Sum P(3) = 7.0e-30
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 245 IISSQLQEAYASIPQFRAQID-RQYKSLLDKVTNNINQVCLPE 286
II++QL + P F + R K+LL +++ I +V LP+
Sbjct: 1084 IITAQLDKD--DDPDFARLVKGRIEKTLLGEISEYIEEVFLPD 1124
>FB|FBgn0003277 [details] [associations]
symbol:RpII215 "RNA polymerase II 215kD subunit" species:7227
"Drosophila melanogaster" [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS;NAS;IDA] [GO:0005703 "polytene
chromosome puff" evidence=IDA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISS;NAS] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0007095
"mitotic G2 DNA damage checkpoint" evidence=IGI] [GO:0005700
"polytene chromosome" evidence=IDA] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
PROSITE:PS00115 SMART:SM00663 GO:GO:0007095 GO:GO:0046872
GO:GO:0003677 EMBL:AE014298 GO:GO:0006366 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0005703 GO:GO:0003899 eggNOG:COG0086
GO:GO:0005665 GeneTree:ENSGT00700000104490 OMA:KVLPWST KO:K03006
EMBL:M27431 EMBL:M14203 EMBL:M11798 EMBL:M19537 PIR:S04457
RefSeq:NP_511124.1 UniGene:Dm.2925 ProteinModelPortal:P04052
SMR:P04052 DIP:DIP-22282N IntAct:P04052 MINT:MINT-970158
STRING:P04052 PaxDb:P04052 EnsemblMetazoa:FBtr0073542 GeneID:32100
KEGG:dme:Dmel_CG1554 CTD:32100 FlyBase:FBgn0003277
InParanoid:P04052 OrthoDB:EOG4QRFJV PhylomeDB:P04052
GenomeRNAi:32100 NextBio:776837 Bgee:P04052 GermOnline:CG1554
Uniprot:P04052
Length = 1887
Score = 352 (129.0 bits), Expect = 2.9e-76, Sum P(4) = 2.9e-76
Identities = 69/133 (51%), Positives = 92/133 (69%)
Query: 295 NNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFV 354
NNL+ MV SG+KGS +N Q+ +GQ +EGKR RTLP F+ + P + GFV
Sbjct: 756 NNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFV 815
Query: 355 DGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSD 414
+ ++ G+ P EF+FH M GREGLIDTAVKT+ +GY+QR L+K +E + V+YD TVR+S
Sbjct: 816 ENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSV 875
Query: 415 LSLIQVLYGEDGL 427
LIQ+ YGEDGL
Sbjct: 876 GQLIQLRYGEDGL 888
Score = 218 (81.8 bits), Expect = 2.9e-76, Sum P(4) = 2.9e-76
Identities = 57/157 (36%), Positives = 85/157 (54%)
Query: 572 ANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSM 631
ANPGE VG LAAQS+GEP+TQMTLNTFHFAG NVTLG+PRL+EI+ ++ K K PS+
Sbjct: 1073 ANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKP-KAPSL 1131
Query: 632 EIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEPH---MNYQMKFCFI 688
+ + +KA + + T L KV + P+P ++ +F +
Sbjct: 1132 TVFLTGGAARDAEKAKNVLCRLEHTT----LRKVTANTAIYYDPDPQRTVISEDQEFVNV 1187
Query: 689 PAHMYR-DKTSVKPSKIIDHFERKFLKELEVAIAKRA 724
M D T + P + +RK + + ++ + + A
Sbjct: 1188 YYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIA 1224
Score = 213 (80.0 bits), Expect = 2.9e-76, Sum P(4) = 2.9e-76
Identities = 66/214 (30%), Positives = 106/214 (49%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE + Q + P+ P+ G++QD + + K++ RD F+TR + MNL L L
Sbjct: 504 RAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQVMNL----LMFL 559
Query: 73 NTEIRTLP-PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR-HGELLSGILDKKQFGSTQ 130
T +P P I KP PLWTGKQ+ S +I P + +IR H S D++ G
Sbjct: 560 PTWDAKMPQPCILKPRPLWTGKQIFSLII----PGNVNMIRTH----STHPDEEDEGP-- 609
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLF 190
Y + + DT V + HGEL+ GIL KK G++ L+H + G + A + +
Sbjct: 610 YKWI-SPGDTKVMVEHGELIMGILCKKSLGTSAGSLLHICFLELGHDIAGRFYGNIQTVI 668
Query: 191 TVYLQRVGFTLGVRDILVRQERDRKRTKIINKAR 224
+L G ++G+ D + + + + I KA+
Sbjct: 669 NNWLLFEGHSIGIGDTIADPQTYNEIQQAIKKAK 702
Score = 187 (70.9 bits), Expect = 2.9e-76, Sum P(4) = 2.9e-76
Identities = 45/140 (32%), Positives = 76/140 (54%)
Query: 868 LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 927
LL+TDG ++ + R + D + NDI + GIEA + + +E+ V YG+ V
Sbjct: 1327 LLETDGTSMMKVLSERDV-DPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYV 1385
Query: 928 DPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRA 986
+ RHL+L+ D MT G +A+ R+GI R + + + +FE ++ + A+ D +R
Sbjct: 1386 NYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAETDPMRG 1445
Query: 987 PSARVMLGQECRQGTGLFQL 1006
S +++GQ + GTG F L
Sbjct: 1446 VSENIIMGQLPKMGTGCFDL 1465
>UNIPROTKB|J9NW09 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 GO:GO:0003677 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 EMBL:AAEX03003616 EMBL:AAEX03003617
Ensembl:ENSCAFT00000050029 Uniprot:J9NW09
Length = 1789
Score = 356 (130.4 bits), Expect = 5.4e-76, Sum P(4) = 5.4e-76
Identities = 77/168 (45%), Positives = 103/168 (61%)
Query: 260 FRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLL 319
F Q++R DK T + Q L E NN + MV SGAKGS +N Q+ ++
Sbjct: 737 FENQVNRILNDARDK-TGSSAQKSLSE-------YNNFKSMVVSGAKGSKINISQVIAVV 788
Query: 320 GQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLI 379
GQ +EGKR RTLP F+ + P + GFV+ ++ G+ P EFFFH M GREGLI
Sbjct: 789 GQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLI 848
Query: 380 DTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL 427
DTAVKT+ +GY+QR L+K +E + V YD TVR+S ++Q+ YGEDGL
Sbjct: 849 DTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL 896
Score = 215 (80.7 bits), Expect = 5.4e-76, Sum P(4) = 5.4e-76
Identities = 49/108 (45%), Positives = 69/108 (63%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
++A+PGE VG LAAQS+GEP+TQMTLNTFH+AG NVTLG+PRL+E++ ++ K KTP
Sbjct: 1079 AIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKP-KTP 1137
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEP 677
S+ + FL + + + A R + R+ L KV + P P
Sbjct: 1138 SLTV-FL--LGQSARDAERAKDILCRLEHT-TLRKVTANTAIYYDPNP 1181
Score = 208 (78.3 bits), Expect = 5.4e-76, Sum P(4) = 5.4e-76
Identities = 68/215 (31%), Positives = 102/215 (47%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + P+ P+ G++QD + + K + RD FL R E MNL L L
Sbjct: 512 RAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNL----LMFL 567
Query: 73 NTEIRTLP-PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR-HGELLSGILDKKQFGSTQ 130
+T +P P I KP PLWTGKQ+ S +I P IR H S D + G +
Sbjct: 568 STWDGKVPQPAILKPRPLWTGKQIFSLII----PGHINCIRTH----STHPDDEDSGPYK 619
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLF 190
+ + DT V + +GEL+ GIL KK G++ LVH + G + S + +
Sbjct: 620 H---ISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDVTRLFYSNIQTVI 676
Query: 191 TVYLQRVGFTLGVRDILVRQERDRKRTKIINKARR 225
+L G T+G+ D + + + I KA++
Sbjct: 677 NNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQ 711
Score = 187 (70.9 bits), Expect = 5.4e-76, Sum P(4) = 5.4e-76
Identities = 45/140 (32%), Positives = 79/140 (56%)
Query: 868 LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 927
+L+TDG+++ + + + D + NDI + + GIEA + + RE+ +V + G V
Sbjct: 1335 ILETDGVSLMRVLSEKDV-DPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYV 1393
Query: 928 DPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRA 986
+ RHL+L+ D MT G +A+ R+G+ R + + K +FE ++ + +A+ G D ++
Sbjct: 1394 NYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKG 1453
Query: 987 PSARVMLGQECRQGTGLFQL 1006
S +MLGQ GTG F L
Sbjct: 1454 VSENIMLGQLAPAGTGCFDL 1473
Score = 49 (22.3 bits), Expect = 1.3e-61, Sum P(4) = 1.3e-61
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 862 EKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMAST-YGI 905
E+E H++ DG VN YRHL L H MA T +G+
Sbjct: 1379 ERELYHVISFDGSYVN----YRHLALLCDTMTCRGHLMAITRHGV 1419
Score = 39 (18.8 bits), Expect = 1.2e-24, Sum P(4) = 1.2e-24
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 416 SLIQVLYGEDGLDVTKRQY 434
SL+ + Y E G DVT+ Y
Sbjct: 651 SLVHISYLEMGHDVTRLFY 669
Score = 38 (18.4 bits), Expect = 1.4e-25, Sum P(3) = 1.4e-25
Identities = 16/59 (27%), Positives = 26/59 (44%)
Query: 22 VSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTR--AEYMNLVYQALCILNTEIRT 78
+S + ++ PLS Q++ + LR T +R AE L +A L EI +
Sbjct: 1016 LSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1074
Score = 37 (18.1 bits), Expect = 1.2e-24, Sum P(4) = 1.2e-24
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 323 ELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFM 359
EL G AM SGR L S L + + G V G M
Sbjct: 321 ELPGLPRAMQKSGRPLKS-LKQRLKGKEGR-VRGNLM 355
Score = 37 (18.1 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 636 LPDMPKLEKKANRLAKSM 653
LP +P+ +K+ R KS+
Sbjct: 322 LPGLPRAMQKSGRPLKSL 339
>DICTYBASE|DDB_G0279193 [details] [associations]
symbol:rpb1 "RNA polymerase II core subunit"
species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA;ISS] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 dictyBase:DDB_G0279193
GO:GO:0006355 GenomeReviews:CM000152_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:AAFI02000030 GO:GO:0003899 eggNOG:COG0086 GO:GO:0005665
OMA:KVLPWST EMBL:S52651 PIR:A56823 RefSeq:XP_641735.1 STRING:P35084
PRIDE:P35084 EnsemblProtists:DDB0215406 GeneID:8621932
KEGG:ddi:DDB_G0279193 KO:K03006 ProtClustDB:CLSZ2428993
Uniprot:P35084
Length = 1727
Score = 358 (131.1 bits), Expect = 6.9e-76, Sum P(4) = 6.9e-76
Identities = 70/134 (52%), Positives = 92/134 (68%)
Query: 295 NNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFV 354
NNL+ MV +G+KGS +N Q+ +GQ +EGKR RTLP F + P + GFV
Sbjct: 750 NNLKAMVTAGSKGSFINISQMMACVGQQNVEGKRIPFGFQSRTLPHFTKDDYGPESRGFV 809
Query: 355 DGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSD 414
+ ++ G+ PQEFFFH M GREGLIDTAVKTS +GY+QR LVK +E +++ YD TVR+S
Sbjct: 810 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDVSIKYDATVRNSL 869
Query: 415 LSLIQVLYGEDGLD 428
+IQ YGEDG+D
Sbjct: 870 GDVIQFAYGEDGID 883
Score = 246 (91.7 bits), Expect = 6.9e-76, Sum P(4) = 6.9e-76
Identities = 53/102 (51%), Positives = 70/102 (68%)
Query: 566 KNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKA 625
K L +LA+PGE VG LAAQSIGEP+TQMTLNTFH+AG NVTLG+PRL+EI+ +A K
Sbjct: 1071 KFLQALAHPGEMVGALAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINIA-KQ 1129
Query: 626 IKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKI 667
+KTPS+ I P M + +A + + T+A+V +I
Sbjct: 1130 VKTPSLTIYLKPHMARDMDRAKIVKSQLEYTTLANVTSATEI 1171
Score = 180 (68.4 bits), Expect = 6.9e-76, Sum P(4) = 6.9e-76
Identities = 42/140 (30%), Positives = 79/140 (56%)
Query: 868 LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 927
+L TDG+++ + + + D + NDI + GIEA +++E++ V + G V
Sbjct: 1323 ILDTDGVSLLEVMSHPDV-DHTRTTSNDIVEIIQVLGIEAVRNALLKELRAVISFDGSYV 1381
Query: 928 DPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRA 986
+ RHL+++AD MT+ G +A+ R+GI R+ + + +FE +E + A+M D ++
Sbjct: 1382 NYRHLAILADVMTYRGHLMAITRHGINRVETGPLMRCSFEETVEILMDAAMFSETDDVKG 1441
Query: 987 PSARVMLGQECRQGTGLFQL 1006
+ ++LGQ GTG F++
Sbjct: 1442 VTENIILGQLPPLGTGSFEV 1461
Score = 180 (68.4 bits), Expect = 6.9e-76, Sum P(4) = 6.9e-76
Identities = 49/147 (33%), Positives = 76/147 (51%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE +M V Q + P+ P+ G++QD ++ + RD F+ + MN++ + +
Sbjct: 503 RAEVIEIMMVPRQIVSPQSNRPVMGIVQDTLLGSRLFTKRDCFMEKDLVMNIL---MWLP 559
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVI--INL-----TPKDK-----------VIIRHG 114
+ + + PP I KP LWTGKQ+ S +I INL T DK VII G
Sbjct: 560 SWDGKVPPPAILKPKQLWTGKQLFSLIIPDINLIRFTSTHNDKEPNECSAGDTRVIIERG 619
Query: 115 ELLSGILDKKQFGSTQYGLVHAVWDTH 141
ELL+GIL K+ G+ ++H V + H
Sbjct: 620 ELLAGILCKRSLGAANGSIIHVVMNEH 646
Score = 157 (60.3 bits), Expect = 1.7e-73, Sum P(4) = 1.7e-73
Identities = 61/221 (27%), Positives = 94/221 (42%)
Query: 27 LVPKD-GSPLSGLIQDHVISGAKLSLRDTFLTRAEYM--NLVYQALCILNT-EIRTLPPT 82
+VP+ SP S ++ L R F R +M +LV L L + + + PP
Sbjct: 511 MVPRQIVSPQSNRPVMGIVQDTLLGSR-LFTKRDCFMEKDLVMNILMWLPSWDGKVPPPA 569
Query: 83 IWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYGLVHAVWDTHV 142
I KP LWTGKQ+ S +I ++ +IR + + K+ G DT V
Sbjct: 570 ILKPKQLWTGKQLFSLIIPDIN-----LIR----FTSTHNDKEPNECSAG------DTRV 614
Query: 143 TIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLG 202
I GELL+GIL K+ G+ ++H V + HG + + + +L GFT+G
Sbjct: 615 IIERGELLAGILCKRSLGAANGSIIHVVMNEHGHDTCRLFIDQTQTVVNHWLINRGFTMG 674
Query: 203 VRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDP 243
+ D + K T I+ A+ E A + P
Sbjct: 675 IGDTIADSATMAKVTLTISSAKNQVKELIIKAQNKQFECQP 715
Score = 71 (30.1 bits), Expect = 1.6e-64, Sum P(4) = 1.6e-64
Identities = 37/171 (21%), Positives = 76/171 (44%)
Query: 108 KVIIRHGELLSGILDKKQFGSTQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQY--- 164
+VII GELL+GIL K+ G+ ++H V + H H + +D+ Q +
Sbjct: 613 RVIIERGELLAGILCKRSLGAANGSIIHVVMNEH---GH-DTCRLFIDQTQTVVNHWLIN 668
Query: 165 -GLVHAVWDTHG-----AEHAISLLSCL--AKLFTVYLQRVGFTLGVRDILVRQERDRKR 216
G + DT A+ +++ S K + Q F ++ + ++K
Sbjct: 669 RGFTMGIGDTIADSATMAKVTLTISSAKNQVKELIIKAQNKQFECQPGKSVI-ETFEQKV 727
Query: 217 TKIINKARRLGTEAACNALGLPLDTDPEIISSQLQEAYASIPQFRAQIDRQ 267
+++NKAR +A ++L + ++++ + ++ +I Q A + +Q
Sbjct: 728 NQVLNKARDTAGSSAQDSLSEDNNLKA-MVTAGSKGSFINISQMMACVGQQ 777
>UNIPROTKB|F1PGS0 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 GO:GO:0003677 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 OMA:KVLPWST EMBL:AAEX03003616
EMBL:AAEX03003617 Ensembl:ENSCAFT00000026237 Uniprot:F1PGS0
Length = 1969
Score = 356 (130.4 bits), Expect = 9.0e-76, Sum P(4) = 9.0e-76
Identities = 77/168 (45%), Positives = 103/168 (61%)
Query: 260 FRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLL 319
F Q++R DK T + Q L E NN + MV SGAKGS +N Q+ ++
Sbjct: 737 FENQVNRILNDARDK-TGSSAQKSLSE-------YNNFKSMVVSGAKGSKINISQVIAVV 788
Query: 320 GQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLI 379
GQ +EGKR RTLP F+ + P + GFV+ ++ G+ P EFFFH M GREGLI
Sbjct: 789 GQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLI 848
Query: 380 DTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL 427
DTAVKT+ +GY+QR L+K +E + V YD TVR+S ++Q+ YGEDGL
Sbjct: 849 DTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL 896
Score = 215 (80.7 bits), Expect = 9.0e-76, Sum P(4) = 9.0e-76
Identities = 49/108 (45%), Positives = 69/108 (63%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
++A+PGE VG LAAQS+GEP+TQMTLNTFH+AG NVTLG+PRL+E++ ++ K KTP
Sbjct: 1079 AIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKP-KTP 1137
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEP 677
S+ + FL + + + A R + R+ L KV + P P
Sbjct: 1138 SLTV-FL--LGQSARDAERAKDILCRLEHT-TLRKVTANTAIYYDPNP 1181
Score = 208 (78.3 bits), Expect = 9.0e-76, Sum P(4) = 9.0e-76
Identities = 68/215 (31%), Positives = 102/215 (47%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + P+ P+ G++QD + + K + RD FL R E MNL L L
Sbjct: 512 RAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNL----LMFL 567
Query: 73 NTEIRTLP-PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR-HGELLSGILDKKQFGSTQ 130
+T +P P I KP PLWTGKQ+ S +I P IR H S D + G +
Sbjct: 568 STWDGKVPQPAILKPRPLWTGKQIFSLII----PGHINCIRTH----STHPDDEDSGPYK 619
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLF 190
+ + DT V + +GEL+ GIL KK G++ LVH + G + S + +
Sbjct: 620 H---ISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDVTRLFYSNIQTVI 676
Query: 191 TVYLQRVGFTLGVRDILVRQERDRKRTKIINKARR 225
+L G T+G+ D + + + I KA++
Sbjct: 677 NNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQ 711
Score = 187 (70.9 bits), Expect = 9.0e-76, Sum P(4) = 9.0e-76
Identities = 45/140 (32%), Positives = 79/140 (56%)
Query: 868 LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 927
+L+TDG+++ + + + D + NDI + + GIEA + + RE+ +V + G V
Sbjct: 1335 ILETDGVSLMRVLSEKDV-DPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYV 1393
Query: 928 DPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRA 986
+ RHL+L+ D MT G +A+ R+G+ R + + K +FE ++ + +A+ G D ++
Sbjct: 1394 NYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKG 1453
Query: 987 PSARVMLGQECRQGTGLFQL 1006
S +MLGQ GTG F L
Sbjct: 1454 VSENIMLGQLAPAGTGCFDL 1473
Score = 49 (22.3 bits), Expect = 2.2e-61, Sum P(4) = 2.2e-61
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 862 EKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMAST-YGI 905
E+E H++ DG VN YRHL L H MA T +G+
Sbjct: 1379 ERELYHVISFDGSYVN----YRHLALLCDTMTCRGHLMAITRHGV 1419
Score = 39 (18.8 bits), Expect = 1.9e-24, Sum P(4) = 1.9e-24
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 416 SLIQVLYGEDGLDVTKRQY 434
SL+ + Y E G DVT+ Y
Sbjct: 651 SLVHISYLEMGHDVTRLFY 669
Score = 38 (18.4 bits), Expect = 1.9e-25, Sum P(3) = 1.9e-25
Identities = 16/59 (27%), Positives = 26/59 (44%)
Query: 22 VSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTR--AEYMNLVYQALCILNTEIRT 78
+S + ++ PLS Q++ + LR T +R AE L +A L EI +
Sbjct: 1016 LSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1074
Score = 37 (18.1 bits), Expect = 1.9e-24, Sum P(4) = 1.9e-24
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 323 ELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFM 359
EL G AM SGR L S L + + G V G M
Sbjct: 321 ELPGLPRAMQKSGRPLKS-LKQRLKGKEGR-VRGNLM 355
Score = 37 (18.1 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 636 LPDMPKLEKKANRLAKSM 653
LP +P+ +K+ R KS+
Sbjct: 322 LPGLPRAMQKSGRPLKSL 339
>RGD|1587326 [details] [associations]
symbol:Polr2a "polymerase (RNA) II (DNA directed) polypeptide A"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0004672 "protein kinase activity" evidence=IEA;ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA;ISO] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0006468 "protein
phosphorylation" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0031625 "ubiquitin protein ligase binding"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000684 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007073 InterPro:IPR007075
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
Pfam:PF00623 Pfam:PF04983 Pfam:PF04990 Pfam:PF04992 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 Pfam:PF05001 PROSITE:PS00115
SMART:SM00663 RGD:1587326 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 KO:K03006 CTD:5430 OrthoDB:EOG4JWVCM
IPI:IPI00952328 RefSeq:XP_001079162.1 RefSeq:XP_343923.3
UniGene:Rn.163136 Ensembl:ENSRNOT00000068013 GeneID:363633
KEGG:rno:363633 UCSC:RGD:1587326 NextBio:683839 ArrayExpress:D4A5A6
Uniprot:D4A5A6
Length = 1970
Score = 356 (130.4 bits), Expect = 9.0e-76, Sum P(4) = 9.0e-76
Identities = 77/168 (45%), Positives = 103/168 (61%)
Query: 260 FRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLL 319
F Q++R DK T + Q L E NN + MV SGAKGS +N Q+ ++
Sbjct: 737 FENQVNRILNDARDK-TGSSAQKSLSE-------YNNFKSMVVSGAKGSKINISQVIAVV 788
Query: 320 GQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLI 379
GQ +EGKR RTLP F+ + P + GFV+ ++ G+ P EFFFH M GREGLI
Sbjct: 789 GQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLI 848
Query: 380 DTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL 427
DTAVKT+ +GY+QR L+K +E + V YD TVR+S ++Q+ YGEDGL
Sbjct: 849 DTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL 896
Score = 215 (80.7 bits), Expect = 9.0e-76, Sum P(4) = 9.0e-76
Identities = 49/108 (45%), Positives = 69/108 (63%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
++A+PGE VG LAAQS+GEP+TQMTLNTFH+AG NVTLG+PRL+E++ ++ K KTP
Sbjct: 1079 AIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKP-KTP 1137
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEP 677
S+ + FL + + + A R + R+ L KV + P P
Sbjct: 1138 SLTV-FL--LGQSARDAERAKDILCRLEHT-TLRKVTANTAIYYDPNP 1181
Score = 208 (78.3 bits), Expect = 9.0e-76, Sum P(4) = 9.0e-76
Identities = 68/215 (31%), Positives = 102/215 (47%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + P+ P+ G++QD + + K + RD FL R E MNL L L
Sbjct: 512 RAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNL----LMFL 567
Query: 73 NTEIRTLP-PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR-HGELLSGILDKKQFGSTQ 130
+T +P P I KP PLWTGKQ+ S +I P IR H S D + G +
Sbjct: 568 STWDGKVPQPAILKPRPLWTGKQIFSLII----PGHINCIRTH----STHPDDEDSGPYK 619
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLF 190
+ + DT V + +GEL+ GIL KK G++ LVH + G + S + +
Sbjct: 620 H---ISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDVTRLFYSNIQTVI 676
Query: 191 TVYLQRVGFTLGVRDILVRQERDRKRTKIINKARR 225
+L G T+G+ D + + + I KA++
Sbjct: 677 NNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQ 711
Score = 187 (70.9 bits), Expect = 9.0e-76, Sum P(4) = 9.0e-76
Identities = 45/140 (32%), Positives = 79/140 (56%)
Query: 868 LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 927
+L+TDG+++ + + + D + NDI + + GIEA + + RE+ +V + G V
Sbjct: 1335 ILETDGVSLMRVLSEKDV-DPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYV 1393
Query: 928 DPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRA 986
+ RHL+L+ D MT G +A+ R+G+ R + + K +FE ++ + +A+ G D ++
Sbjct: 1394 NYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKG 1453
Query: 987 PSARVMLGQECRQGTGLFQL 1006
S +MLGQ GTG F L
Sbjct: 1454 VSENIMLGQLAPAGTGCFDL 1473
Score = 49 (22.3 bits), Expect = 2.2e-61, Sum P(4) = 2.2e-61
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 862 EKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMAST-YGI 905
E+E H++ DG VN YRHL L H MA T +G+
Sbjct: 1379 ERELYHVISFDGSYVN----YRHLALLCDTMTCRGHLMAITRHGV 1419
Score = 39 (18.8 bits), Expect = 1.9e-24, Sum P(4) = 1.9e-24
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 416 SLIQVLYGEDGLDVTKRQY 434
SL+ + Y E G DVT+ Y
Sbjct: 651 SLVHISYLEMGHDVTRLFY 669
Score = 38 (18.4 bits), Expect = 1.9e-25, Sum P(3) = 1.9e-25
Identities = 16/59 (27%), Positives = 26/59 (44%)
Query: 22 VSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTR--AEYMNLVYQALCILNTEIRT 78
+S + ++ PLS Q++ + LR T +R AE L +A L EI +
Sbjct: 1016 LSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1074
Score = 37 (18.1 bits), Expect = 1.9e-24, Sum P(4) = 1.9e-24
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 323 ELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFM 359
EL G AM SGR L S L + + G V G M
Sbjct: 321 ELPGLPRAMQKSGRPLKS-LKQRLKGKEGR-VRGNLM 355
Score = 37 (18.1 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 636 LPDMPKLEKKANRLAKSM 653
LP +P+ +K+ R KS+
Sbjct: 322 LPGLPRAMQKSGRPLKSL 339
>UNIPROTKB|P24928 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase II subunit RPB1"
species:9606 "Homo sapiens" [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003677 "DNA binding" evidence=NAS] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=NAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0006366
"transcription from RNA polymerase II promoter"
evidence=IDA;NAS;TAS] [GO:0005634 "nucleus" evidence=IDA;NAS]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IDA] [GO:0004672 "protein kinase activity" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0031625 "ubiquitin protein ligase binding" evidence=IPI]
[GO:0006468 "protein phosphorylation" evidence=IDA]
Reactome:REACT_216 Reactome:REACT_71 InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 Reactome:REACT_116125
EMBL:CH471108 GO:GO:0016032 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 Reactome:REACT_1675 GO:GO:0006468 GO:GO:0006368
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006367 GO:GO:0000398
Reactome:REACT_1788 GO:GO:0006370 GO:GO:0050434 GO:GO:0006283
Reactome:REACT_1892 EMBL:AC113189 GO:GO:0003899 PDB:2GHQ PDB:2GHT
PDBsum:2GHQ PDBsum:2GHT eggNOG:COG0086 GO:GO:0003968 GO:GO:0005665
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 EMBL:X63564 EMBL:X74874
EMBL:X74873 EMBL:X74872 EMBL:X74871 EMBL:X74870 EMBL:BC137231
IPI:IPI00031627 PIR:I38186 PIR:S21054 RefSeq:NP_000928.1
UniGene:Hs.270017 PDB:2LTO PDBsum:2LTO ProteinModelPortal:P24928
SMR:P24928 DIP:DIP-29011N IntAct:P24928 MINT:MINT-156582
STRING:P24928 PhosphoSite:P24928 DMDM:281185484 PaxDb:P24928
PRIDE:P24928 Ensembl:ENST00000322644 GeneID:5430 KEGG:hsa:5430
UCSC:uc002ghf.4 CTD:5430 GeneCards:GC17P007387 H-InvDB:HIX0173727
HGNC:HGNC:9187 HPA:CAB012226 HPA:CAB016388 HPA:CAB022311
HPA:HPA021563 MIM:180660 neXtProt:NX_P24928 PharmGKB:PA33507
HOVERGEN:HBG004339 InParanoid:P24928 OrthoDB:EOG4JWVCM
BindingDB:P24928 ChEMBL:CHEMBL1641353 ChiTaRS:POLR2A
EvolutionaryTrace:P24928 GenomeRNAi:5430 NextBio:21009
ArrayExpress:P24928 Bgee:P24928 CleanEx:HS_POLR2A
Genevestigator:P24928 GermOnline:ENSG00000181222 Uniprot:P24928
Length = 1970
Score = 356 (130.4 bits), Expect = 9.0e-76, Sum P(4) = 9.0e-76
Identities = 77/168 (45%), Positives = 103/168 (61%)
Query: 260 FRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLL 319
F Q++R DK T + Q L E NN + MV SGAKGS +N Q+ ++
Sbjct: 737 FENQVNRILNDARDK-TGSSAQKSLSE-------YNNFKSMVVSGAKGSKINISQVIAVV 788
Query: 320 GQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLI 379
GQ +EGKR RTLP F+ + P + GFV+ ++ G+ P EFFFH M GREGLI
Sbjct: 789 GQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLI 848
Query: 380 DTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL 427
DTAVKT+ +GY+QR L+K +E + V YD TVR+S ++Q+ YGEDGL
Sbjct: 849 DTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL 896
Score = 215 (80.7 bits), Expect = 9.0e-76, Sum P(4) = 9.0e-76
Identities = 49/108 (45%), Positives = 69/108 (63%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
++A+PGE VG LAAQS+GEP+TQMTLNTFH+AG NVTLG+PRL+E++ ++ K KTP
Sbjct: 1079 AIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKP-KTP 1137
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEP 677
S+ + FL + + + A R + R+ L KV + P P
Sbjct: 1138 SLTV-FL--LGQSARDAERAKDILCRLEHT-TLRKVTANTAIYYDPNP 1181
Score = 208 (78.3 bits), Expect = 9.0e-76, Sum P(4) = 9.0e-76
Identities = 68/215 (31%), Positives = 102/215 (47%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + P+ P+ G++QD + + K + RD FL R E MNL L L
Sbjct: 512 RAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNL----LMFL 567
Query: 73 NTEIRTLP-PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR-HGELLSGILDKKQFGSTQ 130
+T +P P I KP PLWTGKQ+ S +I P IR H S D + G +
Sbjct: 568 STWDGKVPQPAILKPRPLWTGKQIFSLII----PGHINCIRTH----STHPDDEDSGPYK 619
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLF 190
+ + DT V + +GEL+ GIL KK G++ LVH + G + S + +
Sbjct: 620 H---ISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVI 676
Query: 191 TVYLQRVGFTLGVRDILVRQERDRKRTKIINKARR 225
+L G T+G+ D + + + I KA++
Sbjct: 677 NNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQ 711
Score = 187 (70.9 bits), Expect = 9.0e-76, Sum P(4) = 9.0e-76
Identities = 45/140 (32%), Positives = 79/140 (56%)
Query: 868 LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 927
+L+TDG+++ + + + D + NDI + + GIEA + + RE+ +V + G V
Sbjct: 1335 ILETDGVSLMRVLSEKDV-DPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYV 1393
Query: 928 DPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRA 986
+ RHL+L+ D MT G +A+ R+G+ R + + K +FE ++ + +A+ G D ++
Sbjct: 1394 NYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKG 1453
Query: 987 PSARVMLGQECRQGTGLFQL 1006
S +MLGQ GTG F L
Sbjct: 1454 VSENIMLGQLAPAGTGCFDL 1473
Score = 49 (22.3 bits), Expect = 2.2e-61, Sum P(4) = 2.2e-61
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 862 EKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMAST-YGI 905
E+E H++ DG VN YRHL L H MA T +G+
Sbjct: 1379 ERELYHVISFDGSYVN----YRHLALLCDTMTCRGHLMAITRHGV 1419
Score = 38 (18.4 bits), Expect = 1.9e-25, Sum P(3) = 1.9e-25
Identities = 16/59 (27%), Positives = 26/59 (44%)
Query: 22 VSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTR--AEYMNLVYQALCILNTEIRT 78
+S + ++ PLS Q++ + LR T +R AE L +A L EI +
Sbjct: 1016 LSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1074
Score = 38 (18.4 bits), Expect = 2.4e-24, Sum P(4) = 2.4e-24
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 416 SLIQVLYGEDGLDVTKRQY 434
SL+ + Y E G D+T+ Y
Sbjct: 651 SLVHISYLEMGHDITRLFY 669
Score = 37 (18.1 bits), Expect = 2.4e-24, Sum P(4) = 2.4e-24
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 323 ELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFM 359
EL G AM SGR L S L + + G V G M
Sbjct: 321 ELPGLPRAMQKSGRPLKS-LKQRLKGKEGR-VRGNLM 355
Score = 37 (18.1 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 636 LPDMPKLEKKANRLAKSM 653
LP +P+ +K+ R KS+
Sbjct: 322 LPGLPRAMQKSGRPLKSL 339
>MGI|MGI:98086 [details] [associations]
symbol:Polr2a "polymerase (RNA) II (DNA directed) polypeptide
A" species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006468 "protein phosphorylation"
evidence=ISO] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0031625 "ubiquitin protein ligase binding" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 MGI:MGI:98086
GO:GO:0046872 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
EMBL:AL603707 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 GO:GO:0005665 GeneTree:ENSGT00700000104490
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 CTD:5430
HOVERGEN:HBG004339 OrthoDB:EOG4JWVCM ChiTaRS:POLR2A EMBL:M12130
EMBL:M14101 IPI:IPI00136207 PIR:A28490 RefSeq:NP_033115.1
UniGene:Mm.16533 DisProt:DP00181 ProteinModelPortal:P08775
SMR:P08775 DIP:DIP-46369N IntAct:P08775 STRING:P08775
PhosphoSite:P08775 PaxDb:P08775 PRIDE:P08775
Ensembl:ENSMUST00000058470 Ensembl:ENSMUST00000071213 GeneID:20020
KEGG:mmu:20020 UCSC:uc007jrj.1 InParanoid:Q5F298 NextBio:297535
Bgee:P08775 CleanEx:MM_POLR2A Genevestigator:P08775
GermOnline:ENSMUSG00000005198 Uniprot:P08775
Length = 1970
Score = 356 (130.4 bits), Expect = 9.0e-76, Sum P(4) = 9.0e-76
Identities = 77/168 (45%), Positives = 103/168 (61%)
Query: 260 FRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLL 319
F Q++R DK T + Q L E NN + MV SGAKGS +N Q+ ++
Sbjct: 737 FENQVNRILNDARDK-TGSSAQKSLSE-------YNNFKSMVVSGAKGSKINISQVIAVV 788
Query: 320 GQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLI 379
GQ +EGKR RTLP F+ + P + GFV+ ++ G+ P EFFFH M GREGLI
Sbjct: 789 GQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLI 848
Query: 380 DTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL 427
DTAVKT+ +GY+QR L+K +E + V YD TVR+S ++Q+ YGEDGL
Sbjct: 849 DTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL 896
Score = 215 (80.7 bits), Expect = 9.0e-76, Sum P(4) = 9.0e-76
Identities = 49/108 (45%), Positives = 69/108 (63%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
++A+PGE VG LAAQS+GEP+TQMTLNTFH+AG NVTLG+PRL+E++ ++ K KTP
Sbjct: 1079 AIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKP-KTP 1137
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEP 677
S+ + FL + + + A R + R+ L KV + P P
Sbjct: 1138 SLTV-FL--LGQSARDAERAKDILCRLEHT-TLRKVTANTAIYYDPNP 1181
Score = 208 (78.3 bits), Expect = 9.0e-76, Sum P(4) = 9.0e-76
Identities = 68/215 (31%), Positives = 102/215 (47%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + P+ P+ G++QD + + K + RD FL R E MNL L L
Sbjct: 512 RAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNL----LMFL 567
Query: 73 NTEIRTLP-PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR-HGELLSGILDKKQFGSTQ 130
+T +P P I KP PLWTGKQ+ S +I P IR H S D + G +
Sbjct: 568 STWDGKVPQPAILKPRPLWTGKQIFSLII----PGHINCIRTH----STHPDDEDSGPYK 619
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLF 190
+ + DT V + +GEL+ GIL KK G++ LVH + G + S + +
Sbjct: 620 H---ISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVI 676
Query: 191 TVYLQRVGFTLGVRDILVRQERDRKRTKIINKARR 225
+L G T+G+ D + + + I KA++
Sbjct: 677 NNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQ 711
Score = 187 (70.9 bits), Expect = 9.0e-76, Sum P(4) = 9.0e-76
Identities = 45/140 (32%), Positives = 79/140 (56%)
Query: 868 LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 927
+L+TDG+++ + + + D + NDI + + GIEA + + RE+ +V + G V
Sbjct: 1335 ILETDGVSLMRVLSEKDV-DPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYV 1393
Query: 928 DPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRA 986
+ RHL+L+ D MT G +A+ R+G+ R + + K +FE ++ + +A+ G D ++
Sbjct: 1394 NYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKG 1453
Query: 987 PSARVMLGQECRQGTGLFQL 1006
S +MLGQ GTG F L
Sbjct: 1454 VSENIMLGQLAPAGTGCFDL 1473
Score = 49 (22.3 bits), Expect = 2.2e-61, Sum P(4) = 2.2e-61
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 862 EKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMAST-YGI 905
E+E H++ DG VN YRHL L H MA T +G+
Sbjct: 1379 ERELYHVISFDGSYVN----YRHLALLCDTMTCRGHLMAITRHGV 1419
Score = 38 (18.4 bits), Expect = 1.9e-25, Sum P(3) = 1.9e-25
Identities = 16/59 (27%), Positives = 26/59 (44%)
Query: 22 VSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTR--AEYMNLVYQALCILNTEIRT 78
+S + ++ PLS Q++ + LR T +R AE L +A L EI +
Sbjct: 1016 LSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1074
Score = 38 (18.4 bits), Expect = 2.4e-24, Sum P(4) = 2.4e-24
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 416 SLIQVLYGEDGLDVTKRQY 434
SL+ + Y E G D+T+ Y
Sbjct: 651 SLVHISYLEMGHDITRLFY 669
Score = 37 (18.1 bits), Expect = 2.4e-24, Sum P(4) = 2.4e-24
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 323 ELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFM 359
EL G AM SGR L S L + + G V G M
Sbjct: 321 ELPGLPRAMQKSGRPLKS-LKQRLKGKEGR-VRGNLM 355
Score = 37 (18.1 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 636 LPDMPKLEKKANRLAKSM 653
LP +P+ +K+ R KS+
Sbjct: 322 LPGLPRAMQKSGRPLKSL 339
>UNIPROTKB|G3MZY8 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9913
"Bos taurus" [GO:0031625 "ubiquitin protein ligase binding"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0004672 "protein kinase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR000684 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007073 InterPro:IPR007075
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
Pfam:PF00623 Pfam:PF04983 Pfam:PF04990 Pfam:PF04992 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 Pfam:PF05001 PROSITE:PS00115
SMART:SM00663 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 OMA:KVLPWST EMBL:DAAA02048777
EMBL:DAAA02048778 EMBL:DAAA02048779 EMBL:DAAA02048780
EMBL:DAAA02048781 Ensembl:ENSBTAT00000064788 Uniprot:G3MZY8
Length = 1970
Score = 356 (130.4 bits), Expect = 1.5e-75, Sum P(4) = 1.5e-75
Identities = 77/168 (45%), Positives = 103/168 (61%)
Query: 260 FRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLL 319
F Q++R DK T + Q L E NN + MV SGAKGS +N Q+ ++
Sbjct: 737 FENQVNRILNDARDK-TGSSAQKSLSE-------YNNFKSMVVSGAKGSKINISQVIAVV 788
Query: 320 GQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLI 379
GQ +EGKR RTLP F+ + P + GFV+ ++ G+ P EFFFH M GREGLI
Sbjct: 789 GQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLI 848
Query: 380 DTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL 427
DTAVKT+ +GY+QR L+K +E + V YD TVR+S ++Q+ YGEDGL
Sbjct: 849 DTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL 896
Score = 215 (80.7 bits), Expect = 1.5e-75, Sum P(4) = 1.5e-75
Identities = 49/108 (45%), Positives = 69/108 (63%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
++A+PGE VG LAAQS+GEP+TQMTLNTFH+AG NVTLG+PRL+E++ ++ K KTP
Sbjct: 1079 AIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKP-KTP 1137
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEP 677
S+ + FL + + + A R + R+ L KV + P P
Sbjct: 1138 SLTV-FL--LGQSARDAERAKDILCRLEHT-TLRKVTANTAIYYDPNP 1181
Score = 208 (78.3 bits), Expect = 1.5e-75, Sum P(4) = 1.5e-75
Identities = 68/215 (31%), Positives = 102/215 (47%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + P+ P+ G++QD + + K + RD FL R E MNL L L
Sbjct: 512 RAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNL----LMFL 567
Query: 73 NTEIRTLP-PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR-HGELLSGILDKKQFGSTQ 130
+T +P P I KP PLWTGKQ+ S +I P IR H S D + G +
Sbjct: 568 STWDGKVPQPAILKPRPLWTGKQIFSLII----PGHINCIRTH----STHPDDEDSGPYK 619
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLF 190
+ + DT V + +GEL+ GIL KK G++ LVH + G + S + +
Sbjct: 620 H---ISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVI 676
Query: 191 TVYLQRVGFTLGVRDILVRQERDRKRTKIINKARR 225
+L G T+G+ D + + + I KA++
Sbjct: 677 NNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQ 711
Score = 185 (70.2 bits), Expect = 1.5e-75, Sum P(4) = 1.5e-75
Identities = 45/139 (32%), Positives = 78/139 (56%)
Query: 869 LKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 928
L+TDG+++ + + + D + NDI + + GIEA + + RE+ +V + G V+
Sbjct: 1337 LETDGVSLMRVLSEKDV-DPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVN 1395
Query: 929 PRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAP 987
RHL+L+ D MT G +A+ R+G+ R + + K +FE ++ + +A+ G D ++
Sbjct: 1396 YRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGV 1455
Query: 988 SARVMLGQECRQGTGLFQL 1006
S +MLGQ GTG F L
Sbjct: 1456 SENIMLGQLAPAGTGCFDL 1474
Score = 49 (22.3 bits), Expect = 2.2e-61, Sum P(4) = 2.2e-61
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 862 EKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMAST-YGI 905
E+E H++ DG VN YRHL L H MA T +G+
Sbjct: 1380 ERELYHVISFDGSYVN----YRHLALLCDTMTCRGHLMAITRHGV 1420
Score = 38 (18.4 bits), Expect = 3.1e-25, Sum P(3) = 3.1e-25
Identities = 16/59 (27%), Positives = 26/59 (44%)
Query: 22 VSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTR--AEYMNLVYQALCILNTEIRT 78
+S + ++ PLS Q++ + LR T +R AE L +A L EI +
Sbjct: 1016 LSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1074
Score = 38 (18.4 bits), Expect = 3.9e-24, Sum P(4) = 3.9e-24
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 416 SLIQVLYGEDGLDVTKRQY 434
SL+ + Y E G D+T+ Y
Sbjct: 651 SLVHISYLEMGHDITRLFY 669
Score = 37 (18.1 bits), Expect = 3.9e-24, Sum P(4) = 3.9e-24
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 323 ELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFM 359
EL G AM SGR L S L + + G V G M
Sbjct: 321 ELPGLPRAMQKSGRPLKS-LKQRLKGKEGR-VRGNLM 355
Score = 37 (18.1 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 636 LPDMPKLEKKANRLAKSM 653
LP +P+ +K+ R KS+
Sbjct: 322 LPGLPRAMQKSGRPLKSL 339
>WB|WBGene00004411 [details] [associations]
symbol:rpc-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 GO:GO:0040035 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 KO:K03018 eggNOG:COG0086
HSSP:P04050 GO:GO:0032549 GeneTree:ENSGT00700000104490
HOGENOM:HOG000222974 OMA:PRRPLIF PANTHER:PTHR19376:SF15
EMBL:FO080771 PIR:T34157 RefSeq:NP_501127.2
ProteinModelPortal:Q18566 SMR:Q18566 STRING:Q18566 PaxDb:Q18566
EnsemblMetazoa:C42D4.8 GeneID:177491 KEGG:cel:CELE_C42D4.8
UCSC:C42D4.8 CTD:177491 WormBase:C42D4.8 InParanoid:Q18566
NextBio:897062 Uniprot:Q18566
Length = 1400
Score = 311 (114.5 bits), Expect = 2.0e-75, Sum P(4) = 2.0e-75
Identities = 70/157 (44%), Positives = 93/157 (59%)
Query: 272 LDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAM 331
L + ++ QVCL + + N M G+KGS +N Q+ +GQ + G RP
Sbjct: 752 LSTIRDHAGQVCLRN--LSKY--NAPLTMAVCGSKGSFINISQMIACVGQQAISGHRPPD 807
Query: 332 MVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYL 391
R+LP F + +P A GFV F +G+ P EFFFH M GREGL+DTAVKT+ +GY+
Sbjct: 808 GFEERSLPHFERKKKTPEAKGFVANSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYM 867
Query: 392 QRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
QR LVK LE L YD TVR S +I+ ++GEDGLD
Sbjct: 868 QRRLVKCLEDLCASYDGTVRSSVGDVIEFVFGEDGLD 904
Score = 261 (96.9 bits), Expect = 2.0e-75, Sum P(4) = 2.0e-75
Identities = 72/213 (33%), Positives = 115/213 (53%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAE---YMNLVYQAL 69
KAEAS LMNV + + P+ G PL IQD + G L+ +DTFL RAE + + A
Sbjct: 512 KAEASELMNVKNNLITPRSGEPLVAAIQDFITGGYLLTHKDTFLPRAEVYRFAAALIDAS 571
Query: 70 CILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGST 129
T+IR PP I +P+ LWTGKQ++ +I P DK G +S L K T
Sbjct: 572 AKKQTKIRIPPPAIRRPVELWTGKQLIELII---RP-DK-----GSDVSLNLTAKNKSYT 622
Query: 130 QYGLVHAVWDTHVTIRHGELLSGILDKKQFGST-QYGLVHAVWDTHGAEHAISLLSCLAK 188
L D++V IR+ LL+G LDK GS+ + + + + +G + A+ + LA+
Sbjct: 623 G-NLELCSKDSYVIIRNSVLLAGCLDKSLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLAR 681
Query: 189 LFTVYLQRVGFTLGVRDILVRQERDRKRTKIIN 221
+ V+L GF++G+ D+ ++ R++ ++++
Sbjct: 682 MAPVFLSNRGFSIGIGDVRPSEQLLREKGQLVD 714
Score = 217 (81.4 bits), Expect = 2.0e-75, Sum P(4) = 2.0e-75
Identities = 45/108 (41%), Positives = 66/108 (61%)
Query: 559 FYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREI 618
F ++ +YK ++ PG VG +AA SIGEPSTQMTL TFHFAG MN+T G+PR++EI
Sbjct: 1027 FIELCYYKVARAITEPGTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNITQGVPRIKEI 1086
Query: 619 LMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVK 666
+ A K I TP + L P E A R+ + + T+ ++ + ++
Sbjct: 1087 IN-AVKTISTPIITAALLD--PYDESLARRVKARIEKTTLGEICDYIE 1131
Score = 169 (64.5 bits), Expect = 2.0e-75, Sum P(4) = 2.0e-75
Identities = 38/125 (30%), Positives = 66/125 (52%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D K N+ +A GIEAA II E+ +GI +D RH+ L+AD MT+ G
Sbjct: 1255 VDPRKTNFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRHVMLLADVMTYRGEV 1314
Query: 946 VAMNRNG-IRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
+ + RNG +++ S + +FE ++ + +A+ + D + S +++G GTG F
Sbjct: 1315 LGITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPMTVGTGTF 1374
Query: 1005 QLRNR 1009
+L +
Sbjct: 1375 KLMQK 1379
>ZFIN|ZDB-GENE-041008-78 [details] [associations]
symbol:polr2a "polymerase (RNA) II (DNA directed)
polypeptide A" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 ZFIN:ZDB-GENE-041008-78 GO:GO:0003677
GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
GO:GO:0005665 GeneTree:ENSGT00700000104490 EMBL:AL929346
IPI:IPI00608319 Ensembl:ENSDART00000077495 Bgee:F1Q9K4
Uniprot:F1Q9K4
Length = 1965
Score = 350 (128.3 bits), Expect = 3.2e-75, Sum P(4) = 3.2e-75
Identities = 75/168 (44%), Positives = 103/168 (61%)
Query: 260 FRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLL 319
F Q++R DK T + Q L E NN + MV +G+KGS +N Q+ ++
Sbjct: 734 FENQVNRILNDARDK-TGSSAQKSLSE-------YNNFKSMVVAGSKGSKINISQVIAVV 785
Query: 320 GQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLI 379
GQ +EGKR RTLP F+ + P + GFV+ ++ G+ P EFFFH M GREGLI
Sbjct: 786 GQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLI 845
Query: 380 DTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL 427
DTAVKT+ +GY+QR L+K +E + V YD TVR+S ++Q+ YGEDGL
Sbjct: 846 DTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL 893
Score = 217 (81.4 bits), Expect = 3.2e-75, Sum P(4) = 3.2e-75
Identities = 50/108 (46%), Positives = 69/108 (63%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
S+A+PGE VG LAAQS+GEP+TQMTLNTFH+AG NVTLG+PRL+E++ ++ K KTP
Sbjct: 1076 SIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINIS-KRPKTP 1134
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKEWLEISPEP 677
S+ + FL + + + A R + R+ L KV + P P
Sbjct: 1135 SLTV-FL--LGQAARDAERAKDILCRLEHT-TLRKVTANTAIYYDPNP 1178
Score = 203 (76.5 bits), Expect = 3.2e-75, Sum P(4) = 3.2e-75
Identities = 68/215 (31%), Positives = 103/215 (47%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + P+ P+ G++QD + + K + RD FL R E MNL L L
Sbjct: 509 RAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNL----LMFL 564
Query: 73 NTEIRTLP-PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR-HGELLSGILDKKQFGSTQ 130
+T +P P I KP PLWTGKQ+ S +I P IR H S D++ G
Sbjct: 565 STWDGKVPQPAILKPRPLWTGKQIFSLII----PGHINAIRTH----STHPDEEDSGP-- 614
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLF 190
Y + + DT V + +GEL+ GIL KK G++ LVH + G + S + +
Sbjct: 615 YKNI-SPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVV 673
Query: 191 TVYLQRVGFTLGVRDILVRQERDRKRTKIINKARR 225
+L G ++G+ D + + + I KA++
Sbjct: 674 NNWLLIEGHSIGIGDSIADKATYQDIQNTIKKAKQ 708
Score = 191 (72.3 bits), Expect = 3.2e-75, Sum P(4) = 3.2e-75
Identities = 47/140 (33%), Positives = 79/140 (56%)
Query: 868 LLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 927
+L+TDG+++ + + + D + NDI + + GIEA + + RE+ +V + G V
Sbjct: 1332 ILETDGVSLMRVLSEKDV-DPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYV 1390
Query: 928 DPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRA 986
+ RHL+L+ D MT G +A+ R+GI R + + K +FE ++ + +AS G D ++
Sbjct: 1391 NYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEASSHGESDPMKG 1450
Query: 987 PSARVMLGQECRQGTGLFQL 1006
S +MLGQ GTG F L
Sbjct: 1451 VSENIMLGQLAPAGTGCFDL 1470
Score = 50 (22.7 bits), Expect = 1.6e-60, Sum P(4) = 1.6e-60
Identities = 18/45 (40%), Positives = 22/45 (48%)
Query: 862 EKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMAST-YGI 905
E+E H++ DG VN YRHL L H MA T +GI
Sbjct: 1376 ERELYHVISFDGSYVN----YRHLALLCDTMTCRGHLMAITRHGI 1416
Score = 38 (18.4 bits), Expect = 4.5e-26, Sum P(3) = 4.5e-26
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 416 SLIQVLYGEDGLDVTKRQY 434
SL+ + Y E G D+T+ Y
Sbjct: 648 SLVHISYLEMGHDITRLFY 666
>GENEDB_PFALCIPARUM|PF13_0150 [details] [associations]
symbol:PF13_0150 "DNA-directed RNA polymerase 3
largest subunit" species:5833 "Plasmodium falciparum" [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0008270
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006383 EMBL:AL844509
GO:GO:0005666 GO:GO:0003899 KO:K03018 GO:GO:0032549
HOGENOM:HOG000222974 PANTHER:PTHR19376:SF15 RefSeq:XP_001350009.1
ProteinModelPortal:Q8IE49 EnsemblProtists:PF13_0150:mRNA
GeneID:814120 KEGG:pfa:PF13_0150 EuPathDB:PlasmoDB:PF3D7_1329000
Uniprot:Q8IE49
Length = 2356
Score = 325 (119.5 bits), Expect = 3.0e-74, Sum P(4) = 3.0e-74
Identities = 76/193 (39%), Positives = 110/193 (56%)
Query: 264 IDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIE 323
++ + KS+LD + N+ + C + N M SGAKG+ +N Q+ +GQ
Sbjct: 859 LEIKVKSILDDLRNDAGKTC--NQYLHYL--NKPLIMFNSGAKGALINIAQMIACVGQQN 914
Query: 324 LEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAV 383
+ G+R RTLP F + + GFV F TG+ P EFFFH M+GREGL+DTAV
Sbjct: 915 VAGQRIQNGFINRTLPHFHFHCKDSESRGFVQNSFYTGLSPTEFFFHTMSGREGLVDTAV 974
Query: 384 KTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVT----KRQYLTDKQ 439
KT+ +GY+QR L+K LE L++HYD +VR D ++Q +YG+D L+ + YL Q
Sbjct: 975 KTAETGYMQRRLMKALEDLSIHYDYSVRSCDKQIVQFIYGDDALNPSYIDNNNTYLD--Q 1032
Query: 440 FSFLEDNIKWICS 452
F + D+I I S
Sbjct: 1033 FDKVFDHIVSISS 1045
Score = 248 (92.4 bits), Expect = 3.0e-74, Sum P(4) = 3.0e-74
Identities = 83/274 (30%), Positives = 134/274 (48%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLV-YQALCI 71
+AEA +LMNV + PK+G + L QD + + ++ +DTFL R + L Y +
Sbjct: 628 RAEALYLMNVKHNLITPKNGEVIIALTQDFLSASYIITNKDTFLDRDTFCLLCSYFSDAS 687
Query: 72 LNTEIRTLP-PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
L E LP P I KP LWTGKQ++S V+I K+ II E+ K FG +
Sbjct: 688 LYIE---LPIPAILKPKELWTGKQLIS-VLIKPNKKENTIINF-EIQEREYSNK-FGDLK 741
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEH-AISLLSCLAKL 189
+ ++ D++V EL+ G L KK GS++YGL + + H + H A+ +++ L+KL
Sbjct: 742 HLCLN---DSYVCFYKSELICGSLGKKVLGSSKYGLFYYLIH-HNSSHIALKIMNRLSKL 797
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
+ Y G T+G+ D+ Q K+ ++ K G E N + L + Q
Sbjct: 798 TSRYFSNKGMTIGIDDVRPSQTLTEKKKDLLLK----GYEKVNNEIILYNEK-----KMQ 848
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVC 283
+Q ++ + KS+LD + N+ + C
Sbjct: 849 IQPGCT----LEETLEIKVKSILDDLRNDAGKTC 878
Score = 210 (79.0 bits), Expect = 3.0e-74, Sum P(4) = 3.0e-74
Identities = 47/115 (40%), Positives = 71/115 (61%)
Query: 555 HVDKFYDMIF---YKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLG 611
++ + Y IF YK ++ PG+ VG ++AQSIGEP TQMTL TFHFAG MNVTLG
Sbjct: 1768 NLKQLYLFIFFNIYKYFKYISTPGDAVGSISAQSIGEPGTQMTLKTFHFAGVASMNVTLG 1827
Query: 612 IPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVK 666
+PR++EI+ A+ +I+TP + IP ++ A + + + T+ D+ +K
Sbjct: 1828 VPRIKEIIN-ASNSIQTPILNIPL--EVNDNYNFALMMKSKLEKTTIRDICMYIK 1879
Score = 174 (66.3 bits), Expect = 3.0e-74, Sum P(4) = 3.0e-74
Identities = 50/181 (27%), Positives = 90/181 (49%)
Query: 829 DVVNQHNIVHKYS--YDKKNHMWCKLLFLPSNLFEEKESKHLLKTDGINVNFISQYRHLL 886
D +N HNI ++ YD+ ++ C+ ++K++ + + +G ++N++ +
Sbjct: 2151 DEINVHNINNEKIEFYDEHLNI-CQGNKKHIQKKKKKKTVYSILVEGNSLNYVLGLEGV- 2208
Query: 887 DLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYV 946
D + N + + GIEAA II E+K Y I++D RH+ L+AD M +G +
Sbjct: 2209 DFKHIISNHVINVFQVLGIEAARITIINEIKKCVEAYSIDIDIRHIMLLADIMAFTGDIL 2268
Query: 947 AMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQ 1005
+NR GI + S + +FE E + +S D + S +++G+ GTG FQ
Sbjct: 2269 GINRFGIQKARQSTLMLASFEETNEHLFVSSFFKNVDEINNISESIIVGKNIPIGTGAFQ 2328
Query: 1006 L 1006
L
Sbjct: 2329 L 2329
Score = 45 (20.9 bits), Expect = 5.0e-24, Sum P(3) = 5.0e-24
Identities = 11/46 (23%), Positives = 26/46 (56%)
Query: 376 EGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVL 421
+G+I +K S +++ +KH+ + + M +++ DL+ + VL
Sbjct: 182 QGVIKKIIKPSLDQFMK---LKHILKVKENGKMIIKEEDLNSLYVL 224
Score = 41 (19.5 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINK 222
++ Q G+ D+L+ ++D KR II K
Sbjct: 1948 IFFQMESLKKGLLDLLIYGDKDIKRC-IIKK 1977
Score = 38 (18.4 bits), Expect = 3.9e-42, Sum P(4) = 3.9e-42
Identities = 15/90 (16%), Positives = 41/90 (45%)
Query: 835 NIVHKYSYDKKNHMWCK-LLFLPSNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYV 893
N + + + +H L F+ +N+ + H + + + + ++L+D K+++
Sbjct: 1384 NYIKSQNLENTHHQVNNDLSFIKNNVILPPKEYHSIFHFVNDYRNVVEIKNLMDKKKIFL 1443
Query: 894 NDI--HYMASTYGIEAAN-RVIIREVKNVF 920
N+ + + S Y + N + I + N++
Sbjct: 1444 NNSEKNVVQSKYNRMSKNLKKKIEIINNIY 1473
Score = 37 (18.1 bits), Expect = 3.1e-56, Sum P(4) = 3.1e-56
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 657 TMADVLEKVKIKEWLEISPEPHM--NYQMKFCFIPAHMYRDKTS 698
T D +KV + IS H+ +Y+ K ++P +++KTS
Sbjct: 1028 TYLDQFDKV-FDHIVSISSS-HLLLSYKNKIPYLPHVQHQNKTS 1069
>UNIPROTKB|Q8IE49 [details] [associations]
symbol:PF13_0150 "DNA-directed RNA polymerase"
species:36329 "Plasmodium falciparum 3D7" [GO:0005666 "DNA-directed
RNA polymerase III complex" evidence=ISS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0008270
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006383 EMBL:AL844509
GO:GO:0005666 GO:GO:0003899 KO:K03018 GO:GO:0032549
HOGENOM:HOG000222974 PANTHER:PTHR19376:SF15 RefSeq:XP_001350009.1
ProteinModelPortal:Q8IE49 EnsemblProtists:PF13_0150:mRNA
GeneID:814120 KEGG:pfa:PF13_0150 EuPathDB:PlasmoDB:PF3D7_1329000
Uniprot:Q8IE49
Length = 2356
Score = 325 (119.5 bits), Expect = 3.0e-74, Sum P(4) = 3.0e-74
Identities = 76/193 (39%), Positives = 110/193 (56%)
Query: 264 IDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIE 323
++ + KS+LD + N+ + C + N M SGAKG+ +N Q+ +GQ
Sbjct: 859 LEIKVKSILDDLRNDAGKTC--NQYLHYL--NKPLIMFNSGAKGALINIAQMIACVGQQN 914
Query: 324 LEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAV 383
+ G+R RTLP F + + GFV F TG+ P EFFFH M+GREGL+DTAV
Sbjct: 915 VAGQRIQNGFINRTLPHFHFHCKDSESRGFVQNSFYTGLSPTEFFFHTMSGREGLVDTAV 974
Query: 384 KTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVT----KRQYLTDKQ 439
KT+ +GY+QR L+K LE L++HYD +VR D ++Q +YG+D L+ + YL Q
Sbjct: 975 KTAETGYMQRRLMKALEDLSIHYDYSVRSCDKQIVQFIYGDDALNPSYIDNNNTYLD--Q 1032
Query: 440 FSFLEDNIKWICS 452
F + D+I I S
Sbjct: 1033 FDKVFDHIVSISS 1045
Score = 248 (92.4 bits), Expect = 3.0e-74, Sum P(4) = 3.0e-74
Identities = 83/274 (30%), Positives = 134/274 (48%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLV-YQALCI 71
+AEA +LMNV + PK+G + L QD + + ++ +DTFL R + L Y +
Sbjct: 628 RAEALYLMNVKHNLITPKNGEVIIALTQDFLSASYIITNKDTFLDRDTFCLLCSYFSDAS 687
Query: 72 LNTEIRTLP-PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
L E LP P I KP LWTGKQ++S V+I K+ II E+ K FG +
Sbjct: 688 LYIE---LPIPAILKPKELWTGKQLIS-VLIKPNKKENTIINF-EIQEREYSNK-FGDLK 741
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEH-AISLLSCLAKL 189
+ ++ D++V EL+ G L KK GS++YGL + + H + H A+ +++ L+KL
Sbjct: 742 HLCLN---DSYVCFYKSELICGSLGKKVLGSSKYGLFYYLIH-HNSSHIALKIMNRLSKL 797
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQ 249
+ Y G T+G+ D+ Q K+ ++ K G E N + L + Q
Sbjct: 798 TSRYFSNKGMTIGIDDVRPSQTLTEKKKDLLLK----GYEKVNNEIILYNEK-----KMQ 848
Query: 250 LQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVC 283
+Q ++ + KS+LD + N+ + C
Sbjct: 849 IQPGCT----LEETLEIKVKSILDDLRNDAGKTC 878
Score = 210 (79.0 bits), Expect = 3.0e-74, Sum P(4) = 3.0e-74
Identities = 47/115 (40%), Positives = 71/115 (61%)
Query: 555 HVDKFYDMIF---YKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLG 611
++ + Y IF YK ++ PG+ VG ++AQSIGEP TQMTL TFHFAG MNVTLG
Sbjct: 1768 NLKQLYLFIFFNIYKYFKYISTPGDAVGSISAQSIGEPGTQMTLKTFHFAGVASMNVTLG 1827
Query: 612 IPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVK 666
+PR++EI+ A+ +I+TP + IP ++ A + + + T+ D+ +K
Sbjct: 1828 VPRIKEIIN-ASNSIQTPILNIPL--EVNDNYNFALMMKSKLEKTTIRDICMYIK 1879
Score = 174 (66.3 bits), Expect = 3.0e-74, Sum P(4) = 3.0e-74
Identities = 50/181 (27%), Positives = 90/181 (49%)
Query: 829 DVVNQHNIVHKYS--YDKKNHMWCKLLFLPSNLFEEKESKHLLKTDGINVNFISQYRHLL 886
D +N HNI ++ YD+ ++ C+ ++K++ + + +G ++N++ +
Sbjct: 2151 DEINVHNINNEKIEFYDEHLNI-CQGNKKHIQKKKKKKTVYSILVEGNSLNYVLGLEGV- 2208
Query: 887 DLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYV 946
D + N + + GIEAA II E+K Y I++D RH+ L+AD M +G +
Sbjct: 2209 DFKHIISNHVINVFQVLGIEAARITIINEIKKCVEAYSIDIDIRHIMLLADIMAFTGDIL 2268
Query: 947 AMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQ 1005
+NR GI + S + +FE E + +S D + S +++G+ GTG FQ
Sbjct: 2269 GINRFGIQKARQSTLMLASFEETNEHLFVSSFFKNVDEINNISESIIVGKNIPIGTGAFQ 2328
Query: 1006 L 1006
L
Sbjct: 2329 L 2329
Score = 45 (20.9 bits), Expect = 5.0e-24, Sum P(3) = 5.0e-24
Identities = 11/46 (23%), Positives = 26/46 (56%)
Query: 376 EGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVL 421
+G+I +K S +++ +KH+ + + M +++ DL+ + VL
Sbjct: 182 QGVIKKIIKPSLDQFMK---LKHILKVKENGKMIIKEEDLNSLYVL 224
Score = 41 (19.5 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINK 222
++ Q G+ D+L+ ++D KR II K
Sbjct: 1948 IFFQMESLKKGLLDLLIYGDKDIKRC-IIKK 1977
Score = 38 (18.4 bits), Expect = 3.9e-42, Sum P(4) = 3.9e-42
Identities = 15/90 (16%), Positives = 41/90 (45%)
Query: 835 NIVHKYSYDKKNHMWCK-LLFLPSNLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYV 893
N + + + +H L F+ +N+ + H + + + + ++L+D K+++
Sbjct: 1384 NYIKSQNLENTHHQVNNDLSFIKNNVILPPKEYHSIFHFVNDYRNVVEIKNLMDKKKIFL 1443
Query: 894 NDI--HYMASTYGIEAAN-RVIIREVKNVF 920
N+ + + S Y + N + I + N++
Sbjct: 1444 NNSEKNVVQSKYNRMSKNLKKKIEIINNIY 1473
Score = 37 (18.1 bits), Expect = 3.1e-56, Sum P(4) = 3.1e-56
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 657 TMADVLEKVKIKEWLEISPEPHM--NYQMKFCFIPAHMYRDKTS 698
T D +KV + IS H+ +Y+ K ++P +++KTS
Sbjct: 1028 TYLDQFDKV-FDHIVSISSS-HLLLSYKNKIPYLPHVQHQNKTS 1069
>CGD|CAL0002215 [details] [associations]
symbol:orf19.3103 species:5476 "Candida albicans" [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 CGD:CAL0002215 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 EMBL:AACQ01000086 KO:K03018 eggNOG:COG0086
GO:GO:0032549 PANTHER:PTHR19376:SF15 RefSeq:XP_715412.1
ProteinModelPortal:Q5A0Z3 STRING:Q5A0Z3 GeneID:3642908
KEGG:cal:CaO19.3103 Uniprot:Q5A0Z3
Length = 1448
Score = 315 (115.9 bits), Expect = 3.1e-74, Sum P(4) = 3.1e-74
Identities = 67/165 (40%), Positives = 98/165 (59%)
Query: 264 IDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIE 323
++ + LL KV + VC+ E ++ A + M G+KGST+N Q+ ++GQ
Sbjct: 757 LEAKIGGLLSKVREEVGDVCIRE--LDSLNAPLI--MATCGSKGSTLNVSQMVAVVGQQI 812
Query: 324 LEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAV 383
+ G R R+LP F +P++ GFV F +G+ P EF FH ++GREGL+DTAV
Sbjct: 813 ISGHRVPDGFQDRSLPHFTKNSKTPQSKGFVRNSFFSGLTPPEFLFHAISGREGLVDTAV 872
Query: 384 KTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
KT+ +GY+ R L+K LE L+ YD TVR+S ++Q YG DGLD
Sbjct: 873 KTAETGYMSRRLMKSLEDLSSQYDNTVRNSSNGIVQFTYGGDGLD 917
Score = 250 (93.1 bits), Expect = 3.1e-74, Sum P(4) = 3.1e-74
Identities = 65/214 (30%), Positives = 110/214 (51%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + L PK G P+ QD + +S +D+F RA + L+ +
Sbjct: 524 RAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRATLVQLL-SMMSDA 582
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
+ + PPTI+KP+ LWTGKQV S ++I K V+I L K F + G
Sbjct: 583 DIQFDIPPPTIFKPVMLWTGKQVFS-LLIKPNKKSNVVIN----LDA--KNKTFHPPKKG 635
Query: 133 LVHAVW--DTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L + + D V IR ++LSG++DK G ++ + + + +G + A + ++ +AKL
Sbjct: 636 LPNEMSPNDGFVVIRGSKILSGLMDKSTLGDGKKHSVFYTILRDYGPQEAAAAMNRMAKL 695
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIINKA 223
+L GF++G+ D+ E +K+ ++ +A
Sbjct: 696 CARFLGNRGFSIGINDVTPADELKQKKELMVEQA 729
Score = 208 (78.3 bits), Expect = 3.1e-74, Sum P(4) = 3.1e-74
Identities = 47/105 (44%), Positives = 62/105 (59%)
Query: 556 VDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRL 615
V F + YK + PG VG + AQSIGEP TQMTL TFHFAG MNVTLG+PR+
Sbjct: 1059 VKTFLEQCLYKYSRARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRI 1118
Query: 616 REILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMAD 660
+EI+ A+K I TP + + D ++ A R+AK T+ +
Sbjct: 1119 KEIIN-ASKVISTPIINAVLVNDDDEI---AARVAKGRIEKTLLE 1159
Score = 174 (66.3 bits), Expect = 3.1e-74, Sum P(4) = 3.1e-74
Identities = 44/142 (30%), Positives = 76/142 (53%)
Query: 866 KHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 925
K ++ T+GI V + H+L++N++ GIEAA II+E+ + +G+
Sbjct: 1291 KDVMNTEGI-VGTKTTTNHVLEVNQIL-----------GIEAARGSIIKEIDYTMSNHGM 1338
Query: 926 EVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSL 984
VDPRH+ L+ D MT+ G + + R G+ ++ S +Q +FE + + A+ + D +
Sbjct: 1339 SVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFFMKNDKI 1398
Query: 985 RAPSARVMLGQECRQGTGLFQL 1006
S ++LGQ GTG F+L
Sbjct: 1399 EGVSECIILGQTMSIGTGSFKL 1420
Score = 39 (18.8 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 554 SHVDKFYDMIFYKNLLSLANPGE 576
SH D F+D LLS+ + +
Sbjct: 561 SHKDSFFDRATLVQLLSMMSDAD 583
Score = 37 (18.1 bits), Expect = 1.0e-23, Sum P(3) = 1.0e-23
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 103 LTPKDKVIIRHGELLSGILDKKQFGSTQY 131
L P + +IR+ L + + DK++ +Y
Sbjct: 962 LAPLENKLIRYDNLGNALNDKEKEQKIEY 990
>ZFIN|ZDB-GENE-050208-103 [details] [associations]
symbol:polr3a "polymerase (RNA) III (DNA directed)
polypeptide A" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
ZFIN:ZDB-GENE-050208-103 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
KO:K03018 GO:GO:0032549 GeneTree:ENSGT00700000104490
PANTHER:PTHR19376:SF15 EMBL:CABZ01084340 EMBL:CABZ01084341
EMBL:CABZ01084342 EMBL:CABZ01084343 EMBL:CABZ01084344
EMBL:CABZ01084345 EMBL:CABZ01084346 IPI:IPI00960980
RefSeq:XP_003199716.1 UniGene:Dr.109694 Ensembl:ENSDART00000105273
GeneID:572258 KEGG:dre:572258 NextBio:20890901 Bgee:E7F5P2
Uniprot:E7F5P2
Length = 1390
Score = 325 (119.5 bits), Expect = 4.3e-74, Sum P(4) = 4.3e-74
Identities = 75/182 (41%), Positives = 104/182 (57%)
Query: 272 LDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAM 331
L + ++ CL E ++ +N+ M G+KGS +N Q+ +GQ + G R
Sbjct: 756 LSVIRDHAGSACLRE--LDK--SNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPD 811
Query: 332 MVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYL 391
R+LP F + P A GFV F +G+ P EFFFH MAGREGL+DTAVKT+ +GY+
Sbjct: 812 GFENRSLPHFQKHSKLPAAKGFVADSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYM 871
Query: 392 QRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDK-QFSFLEDNIKWI 450
QR LVK LE L YD+TVR S +IQ +YG DGLD + + +F + DNI+ +
Sbjct: 872 QRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIRAV 931
Query: 451 CS 452
S
Sbjct: 932 YS 933
Score = 227 (85.0 bits), Expect = 4.3e-74, Sum P(4) = 4.3e-74
Identities = 64/197 (32%), Positives = 98/197 (49%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF R + +V L
Sbjct: 516 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRTKACQIVASILVGK 575
Query: 73 NTEIR-TLP-PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ +I+ +LP P I KP+ LWTGKQ+ S + L P + G KQ+
Sbjct: 576 DEKIKISLPHPAILKPIRLWTGKQIFSLI---LKPSKSCPVMANLRTKG----KQYCGKG 628
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L D+ V I + EL+ G +DK GS ++ + + + G + A +S LA+L
Sbjct: 629 EDL--CANDSFVVIHNSELMCGSMDKGTLGSGSKNNIFYILLRDWGQQEAADAMSRLARL 686
Query: 190 FTVYLQRVGFTLGVRDI 206
VYL GF++G+ D+
Sbjct: 687 APVYLSNRGFSIGIGDV 703
Score = 212 (79.7 bits), Expect = 4.3e-74, Sum P(4) = 4.3e-74
Identities = 53/136 (38%), Positives = 80/136 (58%)
Query: 535 ISEN-LADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQM 593
I++N + V Y R + ++KF + K + + PG VG L AQSIGEP TQM
Sbjct: 989 INDNGTTEPKVLYQLDRITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQM 1048
Query: 594 TLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP----SMEIPFLPDMPKLEKKANRL 649
TL TFHFAG MN+TLG+PR++EI+ A+K I TP +++ PD +L K R+
Sbjct: 1049 TLKTFHFAGVASMNITLGVPRIKEIIN-ASKNISTPIISANLDTNDDPDFARLVK--GRI 1105
Query: 650 AKSMTRITMADVLEKV 665
K++ +++ +E+V
Sbjct: 1106 EKTLLG-EISEYIEEV 1120
Score = 180 (68.4 bits), Expect = 4.3e-74, Sum P(4) = 4.3e-74
Identities = 43/147 (29%), Positives = 80/147 (54%)
Query: 864 ESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
+ K L +G N+ + H ++ +K N+ + + T GIEAA II E++ +
Sbjct: 1220 KQKFKLLVEGDNMRSVMA-THGVNGSKTTSNNTYEVEKTLGIEAARSTIINEIQYTMVNH 1278
Query: 924 GIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGRED 982
G+ +D RH+ L+AD M++ G + + R G+ ++ S + +FE + + A+ G++D
Sbjct: 1279 GMSIDRRHVMLLADLMSYKGEILGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKD 1338
Query: 983 SLRAPSARVMLGQECRQGTGLFQLRNR 1009
S+ S +++G GTGLF+L +R
Sbjct: 1339 SVCGVSECIIMGIPMNIGTGLFKLLHR 1365
Score = 41 (19.5 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 40/171 (23%), Positives = 69/171 (40%)
Query: 552 DASHVDKFYDMIFYKNLLSLAN-PGENVGVLAAQSIGEPS-TQMTLNTFHFAGRGDMNVT 609
D SH Y ++ ++ S + P E G A +G + L FH G
Sbjct: 45 DTSHKPLQYGVLDHRMGTSEKDRPCETCGKNLADCLGHYGYLDLELPCFHI---GYFKAI 101
Query: 610 LGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKIKE 669
+GI L+ I + + T ++ FL D L + LA R + +K + K+
Sbjct: 102 VGI--LQMICKTCSHILLTKEEKLQFL-DY--LRRPG--LAYLQKRGLKKKISDKCR-KK 153
Query: 670 WLEISPEPHMNYQMKFCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAI 720
+ ++ N +K C + ++ S K K++D FL+ +VAI
Sbjct: 154 TVCLNCNA-FNGSVKKCGLLKIIHEKYKSTK--KVVDPAVSDFLQSFDVAI 201
Score = 39 (18.8 bits), Expect = 1.2e-26, Sum P(3) = 1.2e-26
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 258 PQFRAQID-RQYKSLLDKVTNNINQVCLPE 286
P F + R K+LL +++ I +V LP+
Sbjct: 1095 PDFARLVKGRIEKTLLGEISEYIEEVFLPD 1124
>UNIPROTKB|G4MT89 [details] [associations]
symbol:MGG_04652 "DNA-directed RNA polymerase"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 PROSITE:PS00115
SMART:SM00663 GO:GO:0003677 GO:GO:0006366 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0043581 EMBL:CM001232 GO:GO:0003899
GO:GO:0005665 KO:K03006 RefSeq:XP_003713642.1
EnsemblFungi:MGG_04652T0 GeneID:2678092 KEGG:mgr:MGG_04652
Uniprot:G4MT89
Length = 1757
Score = 357 (130.7 bits), Expect = 7.5e-74, Sum P(4) = 7.5e-74
Identities = 73/134 (54%), Positives = 92/134 (68%)
Query: 295 NNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFV 354
NN M SG+KGS++N Q++ L+GQ +EGKR RTLP F + SP A GFV
Sbjct: 752 NNAVTMSRSGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDFSPEARGFV 811
Query: 355 DGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSD 414
+ ++ G+ P EFFFH MAGREGLIDTAVKT+ +GY+QR LVK LE + YD TVR+S
Sbjct: 812 ENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVAAKYDGTVRNSL 871
Query: 415 LSLIQVLYGEDGLD 428
+IQ +YGEDGLD
Sbjct: 872 GDIIQFIYGEDGLD 885
Score = 225 (84.3 bits), Expect = 7.5e-74, Sum P(4) = 7.5e-74
Identities = 48/89 (53%), Positives = 62/89 (69%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
S +PGE VGVLAAQSIGEP+TQMTLNTFHF G NVTLG+PRL+EIL ++ + IKTP
Sbjct: 1069 SFVSPGEMVGVLAAQSIGEPATQMTLNTFHFTGISSKNVTLGVPRLKEILNVSAE-IKTP 1127
Query: 630 SMEIPFLPDM-PKLEKKANRLAKSMTRIT 657
M + P M P +++ + +S+ T
Sbjct: 1128 GMVVRLDPKMYPDFKQENAKTLRSLVEHT 1156
Score = 188 (71.2 bits), Expect = 7.5e-74, Sum P(4) = 7.5e-74
Identities = 43/122 (35%), Positives = 68/122 (55%)
Query: 886 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTY 945
+D + ND++ + GIEAA ++ E+ V A G V+ RHL+L+ D MT+ G+
Sbjct: 1344 VDSVRTLTNDLYQIVDLLGIEAARTALLGELTQVLAFDGSYVNHRHLALLVDVMTYRGSI 1403
Query: 946 VAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLF 1004
A+ R+GI R + + + +FE +E + +A+ G D R S VMLGQ GTG F
Sbjct: 1404 AAVTRHGINRADTGALMRCSFEETVEILLEAAAIGELDDCRGISENVMLGQLAPMGTGAF 1463
Query: 1005 QL 1006
++
Sbjct: 1464 EV 1465
Score = 175 (66.7 bits), Expect = 7.5e-74, Sum P(4) = 7.5e-74
Identities = 48/151 (31%), Positives = 76/151 (50%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + P+ SPL G++QD + KL RD FLT+ M+++ L +
Sbjct: 512 RAEVKELCMVPLNIVSPQRNSPLMGIVQDTLAGTYKLCRRDVFLTKEAVMDIM---LWVP 568
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLT---------P--KDKVIIRHGELLSGIL 121
+ + P I +P P WTGKQ++S VI + P D ++I+ GEL+ G+L
Sbjct: 569 DWDGIIPQPAILRPRPRWTGKQIISMVIPDFVTTHQGGDWNPLNDDALLIQSGELMFGLL 628
Query: 122 DKKQFGSTQYGLVHAVWDTHVTIRHGELLSG 152
KK G+ G++H ++ R L+G
Sbjct: 629 TKKNVGAASGGIIHICYNEQGPARAMAFLNG 659
Score = 99 (39.9 bits), Expect = 6.3e-66, Sum P(4) = 6.3e-66
Identities = 19/69 (27%), Positives = 38/69 (55%)
Query: 139 DTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVG 198
D + I+ GEL+ G+L KK G+ G++H ++ G A++ L+ ++ +L G
Sbjct: 613 DDALLIQSGELMFGLLTKKNVGAASGGIIHICYNEQGPARAMAFLNGCQRVVNYWLLHNG 672
Query: 199 FTLGVRDIL 207
++G+ D +
Sbjct: 673 HSIGIGDTI 681
>UNIPROTKB|E9PTB6 [details] [associations]
symbol:Polr3a "DNA-directed RNA polymerase" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0032728
"positive regulation of interferon-beta production" evidence=IEA]
[GO:0045087 "innate immune response" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 RGD:1305574 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0045087 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0032728
GO:GO:0032549 GeneTree:ENSGT00700000104490 PANTHER:PTHR19376:SF15
IPI:IPI00766228 PRIDE:E9PTB6 Ensembl:ENSRNOT00000013501
Uniprot:E9PTB6
Length = 1342
Score = 324 (119.1 bits), Expect = 2.4e-73, Sum P(4) = 2.4e-73
Identities = 75/178 (42%), Positives = 102/178 (57%)
Query: 272 LDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAM 331
L + ++ CL E ++ +N+ M G+KGS +N Q+ +GQ + G R
Sbjct: 756 LSVIRDHAGSACLRE--LDK--SNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPD 811
Query: 332 MVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYL 391
R+LP F + P A GFV F +G+ P EFFFH MAGREGL+DTAVKT+ +GY+
Sbjct: 812 GFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYM 871
Query: 392 QRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDK-QFSFLEDNIK 448
QR LVK LE L YD+TVR S +IQ +YG DGLD + + +F + DNIK
Sbjct: 872 QRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIK 929
Score = 259 (96.2 bits), Expect = 2.4e-73, Sum P(4) = 2.4e-73
Identities = 70/212 (33%), Positives = 109/212 (51%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
KAEA LM + + P++G PL IQD + L+L+DTF RA+ ++ L
Sbjct: 516 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 575
Query: 73 NTEI--RTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQ 130
+ +I R PPTI KP+ LWTGKQ+ S + L P D +R G KQ+
Sbjct: 576 DEKIKVRLPPPTILKPVTLWTGKQIFSVI---LRPSDDNPVRANLRTKG----KQYCGKG 628
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKL 189
L D++VTI++ EL+ G +DK GS ++ + + + G A +S LA+L
Sbjct: 629 EDL--CTNDSYVTIQNSELMCGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARL 686
Query: 190 FTVYLQRVGFTLGVRDILVRQERDRKRTKIIN 221
VYL GF++G+ D+ Q + + +++N
Sbjct: 687 APVYLSNRGFSIGIGDVTPGQGLLKAKYELLN 718
Score = 213 (80.0 bits), Expect = 2.4e-73, Sum P(4) = 2.4e-73
Identities = 46/96 (47%), Positives = 61/96 (63%)
Query: 535 ISEN-LADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQM 593
I++N + V Y R + ++KF + K + + PG VG L AQSIGEP TQM
Sbjct: 989 INDNGTTEPRVLYQLDRITRTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQM 1048
Query: 594 TLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
TL TFHFAG MN+TLG+PR++EI+ A+KAI TP
Sbjct: 1049 TLKTFHFAGVASMNITLGVPRIKEIIN-ASKAISTP 1083
Score = 140 (54.3 bits), Expect = 2.4e-73, Sum P(4) = 2.4e-73
Identities = 33/122 (27%), Positives = 64/122 (52%)
Query: 864 ESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
+ K L +G N+ + H + + N+ + + T GIEAA II E++ +
Sbjct: 1220 KEKFKLLVEGDNLRAVMA-THGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNH 1278
Query: 924 GIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGRED 982
G+ +D RH+ L++D MT+ G + + R G+ ++ S + +FE + + A+ G++D
Sbjct: 1279 GMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKD 1338
Query: 983 SL 984
S+
Sbjct: 1339 SV 1340
Score = 45 (20.9 bits), Expect = 4.5e-51, Sum P(4) = 4.5e-51
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 35 LSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCILNTEIRTLP 80
L+ +I+ H ISGAK + + +++ L Q +N+E+ +P
Sbjct: 289 LNDVIKKHRISGAKTQM---IMEDWDFLQL--QCALYINSELSGIP 329
Score = 40 (19.1 bits), Expect = 1.5e-50, Sum P(4) = 1.5e-50
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 91 TGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQ 125
T K+V+ ++ N + I H + + +L + Q
Sbjct: 181 TNKKVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQ 215
Score = 37 (18.1 bits), Expect = 8.0e-26, Sum P(3) = 8.0e-26
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 269 KSLLDKVTNNINQVCLPE 286
K+LL +++ I +V LP+
Sbjct: 1107 KTLLGEISEYIEEVFLPD 1124
>FB|FBgn0030687 [details] [associations]
symbol:CG17209 species:7227 "Drosophila melanogaster"
[GO:0006383 "transcription from RNA polymerase III promoter"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=ISS] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 EMBL:AE014298 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 KO:K03018
GO:GO:0032549 GeneTree:ENSGT00700000104490 OMA:PRRPLIF
PANTHER:PTHR19376:SF15 RefSeq:NP_001096987.2 UniGene:Dm.14839
ProteinModelPortal:A8JUY3 SMR:A8JUY3 STRING:A8JUY3
EnsemblMetazoa:FBtr0300811 GeneID:32524 KEGG:dme:Dmel_CG17209
FlyBase:FBgn0030687 OrthoDB:EOG4BNZSM PhylomeDB:A8JUY3
GenomeRNAi:32524 NextBio:778916 Bgee:A8JUY3 Uniprot:A8JUY3
Length = 1383
Score = 342 (125.4 bits), Expect = 1.5e-72, Sum P(4) = 1.5e-72
Identities = 70/139 (50%), Positives = 87/139 (62%)
Query: 290 EPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPR 349
E P N+ M SG+KGS +N Q+ +GQ + GKR R LP F + P
Sbjct: 768 ELHPTNSALIMALSGSKGSNINISQMIACVGQQAISGKRVPNGFENRALPHFERHSAIPA 827
Query: 350 AGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMT 409
A GFV F +G+ P EFFFH MAGREGL+DTAVKT+ +GYLQR LVK LE L VHYD T
Sbjct: 828 ARGFVQNSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYLQRRLVKCLEDLVVHYDGT 887
Query: 410 VRDSDLSLIQVLYGEDGLD 428
VR++ ++ +YG DGLD
Sbjct: 888 VRNAVNEMVDTIYGGDGLD 906
Score = 222 (83.2 bits), Expect = 1.5e-72, Sum P(4) = 1.5e-72
Identities = 64/215 (29%), Positives = 107/215 (49%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM S + PK+G L QD + G L+ ++ FLT+ E M L A C L
Sbjct: 515 RAEALILMGNQSNLVTPKNGEILIAATQDFITGGYLLTQKEVFLTKEEAMQL---AACFL 571
Query: 73 NTEIRTL-----PPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
E T+ PP + KP LWTGKQ+ S + + P D +R +++K +
Sbjct: 572 ANEDSTMHIKLPPPALLKPRRLWTGKQMFSLL---MRPNDDSQVR-----LNMVNKGRNY 623
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCL 186
+ L D+ + IR+ EL+ G++DK GS T+ + + + G HA + L
Sbjct: 624 TRNKDLCSN--DSWIHIRNSELMCGVMDKATMGSGTKQCIFYLLLRDFGESHATKAMWRL 681
Query: 187 AKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIIN 221
A++ + +LQ GF+ G+ D+ ++ + + ++N
Sbjct: 682 ARIASYFLQNRGFSFGISDVTPSKKLLQHKELLLN 716
Score = 191 (72.3 bits), Expect = 1.5e-72, Sum P(4) = 1.5e-72
Identities = 43/98 (43%), Positives = 62/98 (63%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
++ PG VG +AAQSIGEP TQMTL TFHFAG MN+T G+PR+ EI+ ATK I TP
Sbjct: 1017 AVTEPGTAVGAIAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIVEIIN-ATKTISTP 1075
Query: 630 SMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKI 667
+ L + +E A ++ + + T+A++ V++
Sbjct: 1076 IITAE-LENCHSMEF-ARQVKARIEKTTLAELSSYVEV 1111
Score = 173 (66.0 bits), Expect = 1.5e-72, Sum P(4) = 1.5e-72
Identities = 38/114 (33%), Positives = 64/114 (56%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N+I + T GIEAA +I+ E+ V +G+ VD RH+ L+A MT G + + R+G+
Sbjct: 1242 NNICEIYQTLGIEAARTIIMSEITEVMEGHGMSVDWRHIMLLASQMTARGEVLGITRHGL 1301
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
++ S +FE + + A+ G+ D++ S R++LG GTG+F+L
Sbjct: 1302 AKMRESVFNLASFEKTADHLFDAAYYGQTDAINGVSERIILGMPACIGTGIFKL 1355
Score = 39 (18.8 bits), Expect = 2.7e-40, Sum P(4) = 2.7e-40
Identities = 12/40 (30%), Positives = 15/40 (37%)
Query: 267 QYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAK 306
+Y LL T C PE +E L + E AK
Sbjct: 724 EYIELLKAGTLQCQPGCTPEETLESVMLRELSAIREQAAK 763
>SGD|S000005642 [details] [associations]
symbol:RPO31 "RNA polymerase III largest subunit C160"
species:4932 "Saccharomyces cerevisiae" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IDA] [GO:0005666 "DNA-directed RNA polymerase III
complex" evidence=IDA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IDA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 SGD:S000005642
EMBL:BK006948 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 EMBL:X90518
EMBL:X94335 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0005666
GO:GO:0003899 Reactome:REACT_83470 KO:K03018 OrthoDB:EOG4X3M8C
eggNOG:COG0086 GO:GO:0032549 Reactome:REACT_87991 GO:GO:0042797
GeneTree:ENSGT00700000104490 HOGENOM:HOG000222974
PANTHER:PTHR19376:SF15 EMBL:X03129 EMBL:Z75024 PIR:A00694
RefSeq:NP_014759.1 ProteinModelPortal:P04051 SMR:P04051
DIP:DIP-612N IntAct:P04051 MINT:MINT-557787 STRING:P04051
PaxDb:P04051 PeptideAtlas:P04051 EnsemblFungi:YOR116C GeneID:854283
KEGG:sce:YOR116C CYGD:YOR116c OMA:CINELDN NextBio:976257
Genevestigator:P04051 GermOnline:YOR116C Uniprot:P04051
Length = 1460
Score = 312 (114.9 bits), Expect = 4.6e-71, Sum P(4) = 4.6e-71
Identities = 67/165 (40%), Positives = 98/165 (59%)
Query: 264 IDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIE 323
++ + LL KV + VC+ E ++ + A + M G+KGST+N Q+ ++GQ
Sbjct: 762 LEAKIGGLLSKVREEVGDVCINE--LDNWNAPLI--MATCGSKGSTLNVSQMVAVVGQQI 817
Query: 324 LEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAV 383
+ G R R+LP F +P++ GFV F +G+ P EF FH ++GREGL+DTAV
Sbjct: 818 ISGNRVPDGFQDRSLPHFPKNSKTPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAV 877
Query: 384 KTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
KT+ +GY+ R L+K LE L+ YD TVR S ++Q YG DGLD
Sbjct: 878 KTAETGYMSRRLMKSLEDLSCQYDNTVRTSANGIVQFTYGGDGLD 922
Score = 216 (81.1 bits), Expect = 4.6e-71, Sum P(4) = 4.6e-71
Identities = 54/144 (37%), Positives = 79/144 (54%)
Query: 519 PQPLISTFQPDAHFGSISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENV 578
P + PD ++ +N+ SV + R V KF ++ +K + PG +
Sbjct: 1035 PAKELQGIDPDE---TVPDNVKTSVSQLY--RISEKSVRKFLEIALFKYRKARLEPGTAI 1089
Query: 579 GVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPD 638
G + AQSIGEP TQMTL TFHFAG MNVTLG+PR++EI+ A+K I TP + + D
Sbjct: 1090 GAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN-ASKVISTPIINAVLVND 1148
Query: 639 MPKLEKKANRLAKSMTRITM-ADV 661
+++A R+ K T+ +DV
Sbjct: 1149 N---DERAARVVKGRVEKTLLSDV 1169
Score = 213 (80.0 bits), Expect = 4.6e-71, Sum P(4) = 4.6e-71
Identities = 68/245 (27%), Positives = 111/245 (45%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + L PK G P+ QD + +S +D+F RA + Q L ++
Sbjct: 528 RAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFYDRAT----LTQLLSMM 583
Query: 73 NTEIRTL---PPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGST 129
+ I PP I KP LWTGKQV S ++I V+I + K S
Sbjct: 584 SDGIEHFDIPPPAIMKPYYLWTGKQVFS-LLIKPNHNSPVVINLDAKNKVFVPPK---SK 639
Query: 130 QYGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAK 188
+ D V IR ++LSG++DK G ++ + + + +G + A + ++ +AK
Sbjct: 640 SLPNEMSQNDGFVIIRGSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMAK 699
Query: 189 LFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISS 248
L +L GF++G+ D+ + +K+ +++ A E L+T P
Sbjct: 700 LCARFLGNRGFSIGINDVTPADDLKQKKEELVEIAYHKCDELITLFNKGELETQPGCNEE 759
Query: 249 QLQEA 253
Q EA
Sbjct: 760 QTLEA 764
Score = 176 (67.0 bits), Expect = 4.6e-71, Sum P(4) = 4.6e-71
Identities = 38/114 (33%), Positives = 65/114 (57%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N + + S GIEAA IIRE+ + +G+ VDPRH+ L+ D MT+ G + + R G+
Sbjct: 1317 NHVLEVFSVLGIEAARYSIIREINYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGL 1376
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
++ S +Q +FE + + A+ ++D++ S ++LGQ GTG F++
Sbjct: 1377 SKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVSECIILGQTMSIGTGSFKV 1430
Score = 48 (22.0 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 554 SHVDKFYDMIFYKNLLSLANPG 575
SH D FYD LLS+ + G
Sbjct: 565 SHKDSFYDRATLTQLLSMMSDG 586
Score = 44 (20.5 bits), Expect = 2.6e-57, Sum P(4) = 2.6e-57
Identities = 23/87 (26%), Positives = 41/87 (47%)
Query: 902 TYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQ 961
T G+ +R V VF+V GIE R+ S++ + Y M+ +G+ ++P IQ
Sbjct: 1306 TDGV-IGSRTTTNHVLEVFSVLGIEA-ARY-SIIREI-----NYT-MSNHGMSVDPRHIQ 1356
Query: 962 K----MTFEMPLEKIRQASMQGREDSL 984
MT++ + I + + DS+
Sbjct: 1357 LLGDVMTYKGEVLGITRFGLSKMRDSV 1383
>POMBASE|SPBC651.08c [details] [associations]
symbol:rpc1 "DNA-directed RNA polymerase III complex
large subunit Rpc1 (predicted)" species:4896 "Schizosaccharomyces
pombe" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISO] [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006383 "transcription from RNA
polymerase III promoter" evidence=ISO] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
PomBase:SPBC651.08c GO:GO:0005737 GO:GO:0046872 GO:GO:0003677
EMBL:CU329671 GO:GO:0008270 GenomeReviews:CU329671_GR
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006383 GO:GO:0005666
GO:GO:0003899 KO:K03018 OrthoDB:EOG4X3M8C eggNOG:COG0086
GO:GO:0032549 HOGENOM:HOG000222974 OMA:PRRPLIF
PANTHER:PTHR19376:SF15 EMBL:DQ156227 PIR:T40607 RefSeq:NP_595506.1
ProteinModelPortal:O94666 STRING:O94666 EnsemblFungi:SPBC651.08c.1
GeneID:2541094 KEGG:spo:SPBC651.08c NextBio:20802207 Uniprot:O94666
Length = 1405
Score = 339 (124.4 bits), Expect = 3.3e-70, Sum P(4) = 3.3e-70
Identities = 72/170 (42%), Positives = 103/170 (60%)
Query: 262 AQIDRQYKSLLDKVTNNINQVCLPE-GLIEPFPANNLQFMVESGAKGSTVNTMQISCLLG 320
A ++ + S L KV +++ ++C+ E G PAN+ M G+KGS +N Q+ +G
Sbjct: 740 ATLEAKISSTLSKVRDDVGEICMDELG-----PANSPLIMATCGSKGSKINVSQMVACVG 794
Query: 321 QIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLID 380
Q + GKR R+LP F P A GFV F +G+ P EF FH ++GREGL+D
Sbjct: 795 QQIISGKRVPDGFQDRSLPHFHKNSKHPLAKGFVSNSFYSGLTPTEFLFHAISGREGLVD 854
Query: 381 TAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVT 430
TAVKT+ +GY+ R L+K LE L+ YD TVR S+ ++Q +YG+DGLD T
Sbjct: 855 TAVKTAETGYMSRRLMKSLEDLSSAYDGTVRSSNSDVVQFVYGDDGLDPT 904
Score = 223 (83.6 bits), Expect = 3.3e-70, Sum P(4) = 3.3e-70
Identities = 63/215 (29%), Positives = 106/215 (49%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
K EA LM + + + P++G P+ QD + + LSL+DTFL R N+ +
Sbjct: 510 KTEALELMGIKNNLVSPRNGEPIIAATQDFITAAYLLSLKDTFLDRKSISNICCYMMDA- 568
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKK--QFGSTQ 130
+T I PP I KP LWTGKQV TV++ KV++ LD K F +
Sbjct: 569 STHIDLPPPAIIKPRCLWTGKQVF-TVLMKPNRFSKVLVN--------LDAKTRSFSRIK 619
Query: 131 YGLVHAV-WDTHVTIRHGELLSGILDKKQFGSTQY-GLVHAVWDTHGAEHAISLLSCLAK 188
D ++ IR+ E+++G++DK G + L + + +GA A ++ L+K
Sbjct: 620 SKTPEMCPKDGYLMIRNSEIIAGVVDKSVVGDGKKDSLFYVILRDYGALEAAEAITRLSK 679
Query: 189 LFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKA 223
+ +L GF++G+ D+ + ++ ++NKA
Sbjct: 680 MCARFLGNRGFSIGIEDVQPGKSLSSQKEILVNKA 714
Score = 177 (67.4 bits), Expect = 3.3e-70, Sum P(4) = 3.3e-70
Identities = 44/118 (37%), Positives = 63/118 (53%)
Query: 550 RTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVT 609
R + F D + K + + PG VG + AQSIGEP TQMTL TFHFAG T
Sbjct: 1019 RVTEKQLRSFVDRCWEKYMRAKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVA-AQTT 1077
Query: 610 LGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMTRIT-MADVLEKVK 666
LG+PR++EI+ A K I TP + + D ++++ R+ K T + DV ++
Sbjct: 1078 LGVPRIKEIIN-AAKTISTPIITGQLINDR---DERSARVVKGRIEKTYLKDVTSYIE 1131
Score = 167 (63.8 bits), Expect = 3.3e-70, Sum P(4) = 3.3e-70
Identities = 43/153 (28%), Positives = 75/153 (49%)
Query: 858 NLFEEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVK 917
++ ++ K L +G + + ++ K N + M GIEAA II E+
Sbjct: 1228 SVINQESGKIELFMEGTGLQAVMNTEGIVG-TKTSTNHVMEMKDVLGIEAARYSIISEIG 1286
Query: 918 NVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQAS 976
A +G+ VDPRH+ L+ D MT G + + R G+ ++ S + +FE + + A+
Sbjct: 1287 YTMAKHGLTVDPRHIMLLGDVMTCKGEVLGITRFGVAKMKDSVLALASFEKTTDHLFNAA 1346
Query: 977 MQGREDSLRAPSARVMLGQECRQGTGLFQLRNR 1009
+ +DS+ S ++LG+ GT +FQL R
Sbjct: 1347 ARFAKDSIEGISECIVLGKLAPIGTNVFQLIRR 1379
Score = 41 (19.5 bits), Expect = 3.9e-20, Sum P(3) = 3.9e-20
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 242 DPEIISSQLQEAYASIPQFRAQIDRQYKSLLD-KVTNNINQV 282
D E EA +IP+ + + + + L KV N Q+
Sbjct: 185 DEENFRHSFDEALKTIPELKMHLSKAHDDLNPLKVLNLFKQI 226
>ASPGD|ASPL0000047704 [details] [associations]
symbol:AN10316 species:162425 "Emericella nidulans"
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 EMBL:BN001307 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0032549
HOGENOM:HOG000222974 OMA:PRRPLIF PANTHER:PTHR19376:SF15
EnsemblFungi:CADANIAT00009238 Uniprot:C8VPJ2
Length = 1445
Score = 313 (115.2 bits), Expect = 5.1e-65, Sum P(5) = 5.1e-65
Identities = 69/177 (38%), Positives = 100/177 (56%)
Query: 252 EAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVN 311
E Y + + ++ Q +L KV C+ + + + N+ M SG+KGS++N
Sbjct: 752 EKYPGCDELQT-MENQLSGILSKVRQQAGDECIAQ--LSKY--NSPLIMATSGSKGSSIN 806
Query: 312 TMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHC 371
Q+ L+GQ + G+R RTLP F P + GFV F +G+ P EF FH
Sbjct: 807 VSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNARQPPSKGFVRNSFFSGLLPYEFIFHA 866
Query: 372 MAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
M+GREGL+DTAVKT+ +GY+ R L+K LE L+ YD TVR+S ++Q YG+D LD
Sbjct: 867 MSGREGLVDTAVKTAETGYMSRRLMKSLEDLSTGYDDTVRNSSQGIVQFQYGDDKLD 923
Score = 203 (76.5 bits), Expect = 5.1e-65, Sum P(5) = 5.1e-65
Identities = 56/212 (26%), Positives = 98/212 (46%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA LM V + PK+G P+ G IQD + + LS +D F R + + L
Sbjct: 530 RAEAMELMGVKNNLATPKNGEPIIGAIQDFISAAYLLSSKDNFFDRRSFTQICLYMLGP- 588
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
T PP ++KP LWTGKQV + +++ D V++ K G+
Sbjct: 589 QTRFDLPPPAVFKPQMLWTGKQVFN-ILMRPNKDDPVLVNLDAACKQFKPPK--GNQPRD 645
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLV-HAVWDTHGAEHAISLLSCLAKLFT 191
L D+ + +R+ E++ G++DK GS + V + + G A ++ L+KL
Sbjct: 646 LDPN--DSWLVVRNSEVMCGVMDKSTVGSGKKDNVFYIMLRDFGPAAAAEGMNRLSKLSA 703
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKA 223
+ +GF++G+ D+ + + ++ A
Sbjct: 704 RWFSNMGFSIGITDVYPSDRLVQSKNDLVEAA 735
Score = 190 (71.9 bits), Expect = 5.1e-65, Sum P(5) = 5.1e-65
Identities = 53/143 (37%), Positives = 79/143 (55%)
Query: 574 PGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEI 633
PG VG + AQSIGEP TQMTL TFHFAG M++T G+PR++EI+ A+K I TP +
Sbjct: 1066 PGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIIN-ASKEISTPVISC 1124
Query: 634 PFLPDMPKLEKKANRLAKSMTRIT-MADVLEKVKIKEWLEISPEPHMNYQMKFCFIPAHM 692
+ K A R+AK T + D++ V+ + W E ++ ++ + I A +
Sbjct: 1125 ELVE---KRNIVAARMAKGRIEKTFLRDIIHYVR-ETWT--GKEAYLTVKINWDTISA-L 1177
Query: 693 YRDKTSVKPSKIIDHFERKFLKE 715
D T K + I++ R+F E
Sbjct: 1178 ELDLTVGKIRQAIEN-HRRFKSE 1199
Score = 160 (61.4 bits), Expect = 5.1e-65, Sum P(5) = 5.1e-65
Identities = 35/114 (30%), Positives = 61/114 (53%)
Query: 894 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI 953
N++ GIEAA II+E+ V +++DPRH+ L+AD MT+ G + + R G+
Sbjct: 1298 NNVMETREVLGIEAARSTIIQEISEVMK--DMDIDPRHMQLLADVMTYKGEVLGITRFGL 1355
Query: 954 -RLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQL 1006
++ S +Q +FE + + A GR D + S +++G+ GTG ++
Sbjct: 1356 AKMRDSVLQLASFEKTADHLFDAGGAGRTDLIEGVSECIIMGKTVSLGTGAMEV 1409
Score = 42 (19.8 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 90 WTGKQVLSTVIIN 102
WTGK+ TV IN
Sbjct: 1158 WTGKEAYLTVKIN 1170
Score = 38 (18.4 bits), Expect = 5.1e-65, Sum P(5) = 5.1e-65
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 531 HFGSISEN-----LADSVVKYTKGRTDASH 555
H G ++E +A+ ++KY K + + H
Sbjct: 1039 HTGKLTERTLRTFIAECLMKYKKAQVEPGH 1068
Score = 38 (18.4 bits), Expect = 1.2e-19, Sum P(4) = 1.2e-19
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 257 IPQFRAQIDRQYKSLLDKVTNNINQVCLPE 286
+P F ++ S+L ++ + + LPE
Sbjct: 99 LPAFHVGYFKRVISILQEICKECSHILLPE 128
>UNIPROTKB|E2QXD8 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 GO:GO:0032549
GeneTree:ENSGT00700000104490 PANTHER:PTHR19376:SF15
EMBL:AAEX03002853 Ensembl:ENSCAFT00000024699 Uniprot:E2QXD8
Length = 1376
Score = 324 (119.1 bits), Expect = 1.2e-64, Sum P(5) = 1.2e-64
Identities = 75/178 (42%), Positives = 102/178 (57%)
Query: 272 LDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAM 331
L + ++ CL E ++ +N+ M G+KGS +N Q+ +GQ + G R
Sbjct: 759 LSVIRDHAGSACLRE--LDK--SNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPD 814
Query: 332 MVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYL 391
R+LP F + P A GFV F +G+ P EFFFH MAGREGL+DTAVKT+ +GY+
Sbjct: 815 GFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYM 874
Query: 392 QRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTDK-QFSFLEDNIK 448
QR LVK LE L YD+TVR S +IQ +YG DGLD + + +F + DNIK
Sbjct: 875 QRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIK 932
Score = 259 (96.2 bits), Expect = 1.2e-64, Sum P(5) = 1.2e-64
Identities = 73/215 (33%), Positives = 114/215 (53%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVIS--GAKL-SLRDTFLTRAEYMNLVYQAL 69
KAEA LM + + P++G PL IQD + + GA L +L+DTF RA+ ++ L
Sbjct: 516 KAEALVLMGTKANLVTPRNGEPLIAAIQDFLTAFVGAYLLTLKDTFFDRAKACQIIASIL 575
Query: 70 CILNTEIRTL--PPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFG 127
+ +I+ PPTI KP+ LWTGKQ+ S + L P D +R G KQ+
Sbjct: 576 VGKDEKIKVHLPPPTILKPVTLWTGKQIFSVI---LRPSDDNPVRANLRTKG----KQYC 628
Query: 128 STQYGLVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCL 186
L V D++VTI++ EL+SG +DK GS ++ + + + G A +S L
Sbjct: 629 GKGEDL--CVNDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRL 686
Query: 187 AKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIIN 221
A+L VYL GF++G+ D+ Q + + +++N
Sbjct: 687 ARLAPVYLSNRGFSIGIGDVTPGQGLLKAKYELLN 721
Score = 175 (66.7 bits), Expect = 1.2e-64, Sum P(5) = 1.2e-64
Identities = 41/147 (27%), Positives = 79/147 (53%)
Query: 864 ESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
+ K+ L +G N+ + H + + N+ + + T GIEAA II E++ +
Sbjct: 1206 KEKYKLLVEGDNLRAVMA-THGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNH 1264
Query: 924 GIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGRED 982
G+ +D RH+ L++D MT+ G + + R G+ ++ S + +FE + + A+ G++D
Sbjct: 1265 GMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKD 1324
Query: 983 SLRAPSARVMLGQECRQGTGLFQLRNR 1009
S+ S +++G GTGLF+L ++
Sbjct: 1325 SVCGVSECIIMGIPMNIGTGLFKLLHK 1351
Score = 78 (32.5 bits), Expect = 1.2e-64, Sum P(5) = 1.2e-64
Identities = 15/24 (62%), Positives = 21/24 (87%)
Query: 606 MNVTLGIPRLREILMMATKAIKTP 629
MN+TLG+PR++EI+ A+KAI TP
Sbjct: 1047 MNITLGVPRIKEIIN-ASKAISTP 1069
Score = 62 (26.9 bits), Expect = 1.2e-64, Sum P(5) = 1.2e-64
Identities = 19/62 (30%), Positives = 30/62 (48%)
Query: 535 ISEN-LADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQM 593
I++N + V Y R + ++KF + K + + PG VG L AQS+ S +
Sbjct: 992 INDNGTTEPRVLYQLDRITPTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSVA--SMNI 1049
Query: 594 TL 595
TL
Sbjct: 1050 TL 1051
Score = 49 (22.3 bits), Expect = 1.9e-13, Sum P(4) = 1.9e-13
Identities = 26/125 (20%), Positives = 54/125 (43%)
Query: 188 KLFTVYLQRVGFTLGVRDILVRQERDRKRTK-IINKARRL-GTEAACNALGL---PLDTD 242
K F YL+R G T + L ++ D+ R K I + GT C L + T+
Sbjct: 123 KQFLDYLKRPGLTYLQKRGLKKKISDKCRKKNICHYCGAFNGTVKKCGLLKIIHEKYKTN 182
Query: 243 PEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVE 302
+++ + S + + +++ + LL + N+N + + L + PA ++ ++
Sbjct: 183 KKVVDPIVSNFLQSF-ETAIEHNKEVEPLLGRAQENLNPLVVLN-LFKRIPAEDVPLLLM 240
Query: 303 SGAKG 307
+ G
Sbjct: 241 NPEAG 245
Score = 45 (20.9 bits), Expect = 1.3e-42, Sum P(5) = 1.3e-42
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 35 LSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCILNTEIRTLP 80
L+ +I+ H ISGAK + + +++ L Q +N+E+ +P
Sbjct: 289 LNDVIKKHRISGAKTQM---IMEDWDFLQL--QCALYINSELSGIP 329
Score = 40 (19.1 bits), Expect = 4.2e-42, Sum P(5) = 4.2e-42
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 91 TGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQ 125
T K+V+ ++ N + I H + + +L + Q
Sbjct: 181 TNKKVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQ 215
Score = 37 (18.1 bits), Expect = 2.1e-29, Sum P(3) = 2.1e-29
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 269 KSLLDKVTNNINQVCLPE 286
K+LL +++ I +V LP+
Sbjct: 1093 KTLLGEISEYIEEVFLPD 1110
>DICTYBASE|DDB_G0277199 [details] [associations]
symbol:rpc1 "RNA polymerase III, largest subunit"
species:44689 "Dictyostelium discoideum" [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006383 "transcription
from RNA polymerase III promoter" evidence=ISS] [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
dictyBase:DDB_G0277199 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GenomeReviews:CM000151_GR Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:AAFI02000019 GO:GO:0006383 GO:GO:0005666 GO:GO:0003899
KO:K03018 eggNOG:COG0086 HSSP:P04050 GO:GO:0032549 OMA:PRRPLIF
PANTHER:PTHR19376:SF15 RefSeq:XP_642724.1 ProteinModelPortal:Q86AQ5
STRING:Q86AQ5 EnsemblProtists:DDB0216293 GeneID:8620917
KEGG:ddi:DDB_G0277199 ProtClustDB:CLSZ2729139 Uniprot:Q86AQ5
Length = 1450
Score = 352 (129.0 bits), Expect = 4.4e-55, Sum P(3) = 4.4e-55
Identities = 99/306 (32%), Positives = 163/306 (53%)
Query: 139 DTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLS-CLAKLFTVYLQRV 197
D +V R+ EL+ G +DK G G ++++ + + ++ + C+ +L + +
Sbjct: 623 DGYVYFRNSELMCGSIDKSIIGG---GNKNSLFHILMRDFSPTIAANCMTRLAKLCAR-- 677
Query: 198 GFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQEAYASI 257
F LG + + D K + +++ +R E A + L D E S QL +
Sbjct: 678 -F-LGDQGFSIGIP-DIKPAEDLDRKKREIIETAYKKCAVFLK-DYESGSLQLSSGCSME 733
Query: 258 PQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISC 317
F A++++ L ++ ++ ++C+ + + + N+ M G+KGS +N Q+ C
Sbjct: 734 QTFEAKMNQT----LSQIRDDCGKLCVND--LPNY--NSPLIMGLCGSKGSNINIAQMIC 785
Query: 318 LLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREG 377
+GQ + G R + RT P F + +P++ GFV F TG+ P EFFFH M GREG
Sbjct: 786 CVGQQIVNGTRIPNGFTNRTTPHFKHFAKNPKSKGFVSNSFYTGMIPTEFFFHTMGGREG 845
Query: 378 LIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLDVTKRQYLTD 437
L+DTAVKT+ +GY+QR L+K LE L+ HYD TVRDS ++Q +YG+DGLD + D
Sbjct: 846 LVDTAVKTAETGYMQRRLMKALEDLSTHYDYTVRDSIGGIVQFIYGDDGLDPAGME-AKD 904
Query: 438 KQFSFL 443
+ FL
Sbjct: 905 RPVDFL 910
Score = 227 (85.0 bits), Expect = 2.0e-41, Sum P(3) = 2.0e-41
Identities = 65/212 (30%), Positives = 102/212 (48%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AEA+ LM V++ + P++G PL QD + + +S RD F R + L+
Sbjct: 508 RAEATILMGVTNNLITPRNGEPLVAATQDFLTASYLISRRDAFYERYRFA-LMCTHFADA 566
Query: 73 NTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGSTQYG 132
N I PP I KP+ LWTGKQ+ V++ + K V+ E S K + + G
Sbjct: 567 NEHIDLPPPAILKPVELWTGKQIFE-VLLRPSVKSHVLCNF-ETRSRTYSKNLYMCPKDG 624
Query: 133 LVHAVWDTHVTIRHGELLSGILDKKQFGS-TQYGLVHAVWDTHGAEHAISLLSCLAKLFT 191
V+ R+ EL+ G +DK G + L H + A + ++ LAKL
Sbjct: 625 YVY--------FRNSELMCGSIDKSIIGGGNKNSLFHILMRDFSPTIAANCMTRLAKLCA 676
Query: 192 VYLQRVGFTLGVRDILVRQERDRKRTKIINKA 223
+L GF++G+ DI ++ DRK+ +II A
Sbjct: 677 RFLGDQGFSIGIPDIKPAEDLDRKKREIIETA 708
Score = 200 (75.5 bits), Expect = 4.4e-55, Sum P(3) = 4.4e-55
Identities = 50/132 (37%), Positives = 69/132 (52%)
Query: 535 ISENLADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMT 594
+ E A+ V R + ++ F D+ K + PG VG + AQSIGEP TQMT
Sbjct: 1060 LGERFANEHVVNQIHRITKTQIELFLDICLDKYSRARIEPGTAVGAIGAQSIGEPGTQMT 1119
Query: 595 LNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEIPFLPDMPKLEKKANRLAKSMT 654
L TFHFAG MNVTLG+PR++EI+ A K I TP + D + A +A +
Sbjct: 1120 LKTFHFAGVASMNVTLGVPRIKEIIN-AAKNISTPIITASLNCDYDI--RSARIVAGRIE 1176
Query: 655 RITMADVLEKVK 666
+ T+ V +K
Sbjct: 1177 KTTLGHVATHIK 1188
Score = 162 (62.1 bits), Expect = 4.4e-55, Sum P(3) = 4.4e-55
Identities = 39/147 (26%), Positives = 75/147 (51%)
Query: 861 EEKESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 920
+EK+ ++ L +G ++ + + + N I +T GIE A I+ E+ +
Sbjct: 1287 DEKQERYQLLVEGYDLRAVMATPGIKGTHTTS-NHIMECENTLGIETARNTIMSEIDMIM 1345
Query: 921 AVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQG 979
+G+ +D RH+ L+AD M+ G + + R GI ++ S + +FE + + A++
Sbjct: 1346 TSHGMSIDIRHVMLLADLMSFKGEILGITRFGIAKMKESVLMLASFEKTTDHLFDAAVHH 1405
Query: 980 REDSLRAPSARVMLGQECRQGTGLFQL 1006
R+D + S +++G GTGLF+L
Sbjct: 1406 RQDDIVGVSECIIMGVVIPLGTGLFKL 1432
Score = 42 (19.8 bits), Expect = 1.5e-42, Sum P(3) = 1.5e-42
Identities = 14/46 (30%), Positives = 19/46 (41%)
Query: 904 GIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMN 949
GI NRV+I +V Y + V+ L V GT+ N
Sbjct: 1274 GIPTVNRVVISKVDEKQERYQLLVEGYDLRAVMATPGIKGTHTTSN 1319
>UNIPROTKB|I3LJR4 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04992
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
GeneTree:ENSGT00700000104490 EMBL:FP565284
Ensembl:ENSSSCT00000029425 Uniprot:I3LJR4
Length = 1010
Score = 356 (130.4 bits), Expect = 3.8e-45, Sum P(2) = 3.8e-45
Identities = 77/168 (45%), Positives = 103/168 (61%)
Query: 260 FRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLL 319
F Q++R DK T + Q L E NN + MV SGAKGS +N Q+ ++
Sbjct: 737 FENQVNRILNDARDK-TGSSAQKSLSE-------YNNFKSMVVSGAKGSKINISQVIAVV 788
Query: 320 GQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLI 379
GQ +EGKR RTLP F+ + P + GFV+ ++ G+ P EFFFH M GREGLI
Sbjct: 789 GQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLI 848
Query: 380 DTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGL 427
DTAVKT+ +GY+QR L+K +E + V YD TVR+S ++Q+ YGEDGL
Sbjct: 849 DTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL 896
Score = 208 (78.3 bits), Expect = 3.8e-45, Sum P(2) = 3.8e-45
Identities = 68/215 (31%), Positives = 102/215 (47%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQALCIL 72
+AE L V + P+ P+ G++QD + + K + RD FL R E MNL L L
Sbjct: 512 RAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNL----LMFL 567
Query: 73 NTEIRTLP-PTIWKPMPLWTGKQVLSTVIINLTPKDKVIIR-HGELLSGILDKKQFGSTQ 130
+T +P P I KP PLWTGKQ+ S +I P IR H S D + G +
Sbjct: 568 STWDGKVPQPAILKPRPLWTGKQIFSLII----PGHINCIRTH----STHPDDEDSGPYK 619
Query: 131 YGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLF 190
+ + DT V + +GEL+ GIL KK G++ LVH + G + S + +
Sbjct: 620 H---ISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVI 676
Query: 191 TVYLQRVGFTLGVRDILVRQERDRKRTKIINKARR 225
+L G T+G+ D + + + I KA++
Sbjct: 677 NNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQ 711
>RGD|1305574 [details] [associations]
symbol:Polr3a "polymerase (RNA) III (DNA directed) polypeptide
A" species:10116 "Rattus norvegicus" [GO:0003682 "chromatin
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0032728 "positive regulation of interferon-beta production"
evidence=ISO] [GO:0045087 "innate immune response" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR007081
InterPro:IPR015700 Pfam:PF04998 RGD:1305574 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0003899
eggNOG:COG0086 GO:GO:0032549 HOGENOM:HOG000222974 OrthoDB:EOG4QVCB4
PANTHER:PTHR19376:SF15 IPI:IPI00766228 EMBL:BC086344
UniGene:Rn.41904 ProteinModelPortal:Q5RK26 STRING:Q5RK26
UCSC:RGD:1305574 Genevestigator:Q5RK26 Uniprot:Q5RK26
Length = 491
Score = 213 (80.0 bits), Expect = 6.9e-27, Sum P(3) = 6.9e-27
Identities = 46/96 (47%), Positives = 61/96 (63%)
Query: 535 ISEN-LADSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQM 593
I++N + V Y R + ++KF + K + + PG VG L AQSIGEP TQM
Sbjct: 90 INDNGTTEPRVLYQLDRITRTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQM 149
Query: 594 TLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTP 629
TL TFHFAG MN+TLG+PR++EI+ A+KAI TP
Sbjct: 150 TLKTFHFAGVASMNITLGVPRIKEIIN-ASKAISTP 184
Score = 172 (65.6 bits), Expect = 6.9e-27, Sum P(3) = 6.9e-27
Identities = 41/147 (27%), Positives = 78/147 (53%)
Query: 864 ESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
+ K L +G N+ + H + + N+ + + T GIEAA II E++ +
Sbjct: 321 KEKFKLLVEGDNLRAVMA-THGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNH 379
Query: 924 GIEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGRED 982
G+ +D RH+ L++D MT+ G + + R G+ ++ S + +FE + + A+ G++D
Sbjct: 380 GMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKD 439
Query: 983 SLRAPSARVMLGQECRQGTGLFQLRNR 1009
S+ S +++G GTGLF+L ++
Sbjct: 440 SVCGVSECIIMGIPMNIGTGLFKLLHK 466
Score = 43 (20.2 bits), Expect = 6.9e-27, Sum P(3) = 6.9e-27
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 421 LYGEDGLDVTKRQYLTDK-QFSFLEDNIK 448
+YG DGLD + + +F + DNIK
Sbjct: 2 IYGGDGLDPAAMEGKDEPLEFKRVLDNIK 30
Score = 37 (18.1 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 269 KSLLDKVTNNINQVCLPE 286
K+LL +++ I +V LP+
Sbjct: 208 KTLLGEISEYIEEVFLPD 225
>TIGR_CMR|CHY_2317 [details] [associations]
symbol:CHY_2317 "DNA-directed RNA polymerase, beta'
subunit" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 InterPro:IPR012756
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 KO:K03046 TIGRFAMs:TIGR02388 OMA:DINDKHI
ProtClustDB:PRK00566 TIGRFAMs:TIGR02386 HOGENOM:HOG000218387
RefSeq:YP_361126.1 ProteinModelPortal:Q3A9Q8 SMR:Q3A9Q8
STRING:Q3A9Q8 PRIDE:Q3A9Q8 GeneID:3727667 KEGG:chy:CHY_2317
PATRIC:21277703 BioCyc:CHYD246194:GJCN-2316-MONOMER Uniprot:Q3A9Q8
Length = 1152
Score = 138 (53.6 bits), Expect = 1.3e-17, Sum P(5) = 1.3e-17
Identities = 25/49 (51%), Positives = 36/49 (73%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREI 618
S+ + GE VG++AAQSIGEP TQ+T+ TFH G ++T G+PR+ E+
Sbjct: 872 SIVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGEDITQGLPRVEEL 920
Score = 99 (39.9 bits), Expect = 1.3e-17, Sum P(5) = 1.3e-17
Identities = 34/94 (36%), Positives = 45/94 (47%)
Query: 354 VDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDS 413
+ F G+ E+F R+GL DTA++T+ SGYL R LV V D+ VR+
Sbjct: 724 IKANFREGLTVLEYFISTHGARKGLADTALRTADSGYLTRRLVD------VCQDVIVREE 777
Query: 414 DLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNI 447
D EDG+ VT + TD LED I
Sbjct: 778 DCGT------EDGIYVTDVKDGTDV-IEKLEDRI 804
Score = 79 (32.9 bits), Expect = 1.3e-17, Sum P(5) = 1.3e-17
Identities = 26/99 (26%), Positives = 48/99 (48%)
Query: 897 HYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNG-IRL 955
H + GIE A +++EV+ V+ + G+E++ +H+ +V M V + +G L
Sbjct: 993 HDLIKVKGIEGAQLYLLQEVQKVYRMQGVEINDKHIEVVIRQMLRK---VKIEDSGDTDL 1049
Query: 956 NPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLG 994
P + + FE E + + G+ A + RV+LG
Sbjct: 1050 LPGSLVDI-FEFEDENAKVIAKGGKP----ATAKRVLLG 1083
Score = 67 (28.6 bits), Expect = 2.0e-16, Sum P(5) = 2.0e-16
Identities = 14/51 (27%), Positives = 28/51 (54%)
Query: 958 SFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRN 1008
SF+ +F+ + +A+++G+ D L V++G+ GTG+ + RN
Sbjct: 1093 SFLSAASFQETTRVLTEAAIKGKVDPLLGLKENVIIGKLIPAGTGMARYRN 1143
Score = 65 (27.9 bits), Expect = 1.3e-17, Sum P(5) = 1.3e-17
Identities = 23/77 (29%), Positives = 38/77 (49%)
Query: 150 LSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVR 209
++ ++DKK G +V + G E LL L KL Y + G T+G+ DI V
Sbjct: 570 INHLVDKKALGK----IVTESYRKLGYEKTGYLLDGLKKLGFHYATKAGLTIGIVDITVP 625
Query: 210 QERDRKRTKIINKARRL 226
+E+ +I+ +A R+
Sbjct: 626 KEKQ----EILEEADRM 638
Score = 65 (27.9 bits), Expect = 1.3e-17, Sum P(5) = 1.3e-17
Identities = 36/125 (28%), Positives = 55/125 (44%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTF-------LTRAEYMNLV 65
+AEA LM S L PKDG P+ QD VI L++ E + +
Sbjct: 466 QAEARLLMLSSHNILNPKDGKPVVVPTQDMVIGSYYLTVEKPGAKGEGKKFAHPEEVIMA 525
Query: 66 YQALCI-LNTEIRTLPPTIWKPMPLWT--GKQVLSTVIINLTPKDKVIIRHGELLSGILD 122
Y+ I L+T+I+ P + + L T G+ + + VI P++ I H ++D
Sbjct: 526 YEEGVIELHTKIKVRYPIRGEIVELETTPGRIIFNEVI----PEELRFINH------LVD 575
Query: 123 KKQFG 127
KK G
Sbjct: 576 KKALG 580
Score = 53 (23.7 bits), Expect = 2.0e-16, Sum P(5) = 2.0e-16
Identities = 40/147 (27%), Positives = 69/147 (46%)
Query: 219 IINKARRLGTEAACNA---LGLPLDTDPEIISSQLQEA---YASIP-QFRAQI---DRQY 268
+++ ++LG A A +G+ T P+ L+EA A I ++R + D +Y
Sbjct: 598 LLDGLKKLGFHYATKAGLTIGIVDITVPKEKQEILEEADRMVADIEVKYRRGLITEDERY 657
Query: 269 KSLLDKVTNNINQVCLPEGLIEPFPA---NNLQFMVESGAKGSTVNTMQISCLLGQIELE 325
+ ++D + N + + + L+E A N++ M +SGA+G N QI +L
Sbjct: 658 QRVVD-IWNAATEK-VTKKLVETLEASQFNHVYMMAKSGARG---NIQQIR------QLA 706
Query: 326 GKRPAMM-VSGRTLPSFLPYEVSPRAG 351
G R M SGR + LP + + R G
Sbjct: 707 GMRGLMADPSGRIID--LPIKANFREG 731
Score = 37 (18.1 bits), Expect = 1.2e-13, Sum P(5) = 1.2e-13
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 194 LQRVGFTLGVRDILVRQER 212
L+R+ LG DI+VR E+
Sbjct: 268 LKRL-LELGAPDIIVRNEK 285
>TIGR_CMR|BA_0103 [details] [associations]
symbol:BA_0103 "DNA-directed RNA polymerase, beta' subunit"
species:198094 "Bacillus anthracis str. Ames" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 KO:K03046 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 EMBL:X89230 RefSeq:NP_842671.2
RefSeq:YP_016708.1 RefSeq:YP_026389.1 ProteinModelPortal:P77819
IntAct:P77819 DNASU:1086436 EnsemblBacteria:EBBACT00000011911
EnsemblBacteria:EBBACT00000018208 EnsemblBacteria:EBBACT00000020960
GeneID:1086436 GeneID:2818165 GeneID:2851002 KEGG:ban:BA_0103
KEGG:bar:GBAA_0103 KEGG:bat:BAS0103 HOGENOM:HOG000218387
BioCyc:BANT260799:GJAJ-114-MONOMER
BioCyc:BANT261594:GJ7F-116-MONOMER Uniprot:P77819
Length = 1203
Score = 137 (53.3 bits), Expect = 3.3e-16, Sum P(6) = 3.3e-16
Identities = 25/44 (56%), Positives = 34/44 (77%)
Query: 575 GENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREI 618
GE VG++AAQSIGEP TQ+T+ TFH G ++T G+PR++EI
Sbjct: 916 GEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEI 959
Score = 96 (38.9 bits), Expect = 3.3e-16, Sum P(6) = 3.3e-16
Identities = 28/81 (34%), Positives = 41/81 (50%)
Query: 354 VDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDS 413
+ F G+ E+F R+GL DTA+KT+ SGYL R LV + + V D D
Sbjct: 763 IKSSFREGLTVLEYFISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIVREDDCGTDR 822
Query: 414 DLSLIQVLYGEDGLDVTKRQY 434
L LI + ++G +V + Y
Sbjct: 823 GL-LIGAI--KEGNEVIESLY 840
Score = 63 (27.2 bits), Expect = 3.3e-16, Sum P(6) = 3.3e-16
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSL 51
+AEA LM + L PKDG P+ QD V+ L+L
Sbjct: 466 QAEARLLMLAAQNILNPKDGKPVVTPSQDMVLGNYYLTL 504
Score = 61 (26.5 bits), Expect = 3.3e-16, Sum P(6) = 3.3e-16
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 905 IEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYM 939
I A ++REV+ V+ + G+E+ +H+ ++ M
Sbjct: 1039 ITAVQEYLLREVQKVYRMQGVEIGDKHVEVMVRQM 1073
Score = 61 (26.5 bits), Expect = 3.3e-16, Sum P(6) = 3.3e-16
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 958 SFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLR 1007
SF+ +F+ + A+++G+ D L V++G+ GTG+ + R
Sbjct: 1131 SFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMNRYR 1180
Score = 55 (24.4 bits), Expect = 3.3e-16, Sum P(6) = 3.3e-16
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 182 LLSCLAKLFTVYLQRVGFTLGVRDILVRQERD 213
+L + L Y + G T+GV DILV E+D
Sbjct: 639 MLDRMKNLGFKYSTKAGITVGVSDILVLGEKD 670
Score = 54 (24.1 bits), Expect = 4.1e-16, Sum P(6) = 4.1e-16
Identities = 26/116 (22%), Positives = 57/116 (49%)
Query: 217 TKIINKARRLGTEAACNALGLPLDTDPEIISSQ----LQEAYAS----IPQFRAQI---D 265
++++++ + LG + + A G+ + ++ + L EA A I QFR + +
Sbjct: 637 SRMLDRMKNLGFKYSTKA-GITVGVSDILVLGEKDEILHEAQAKVDNVIKQFRRGLITEE 695
Query: 266 RQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMV-ESGAKGSTVNTMQISCLLG 320
+Y ++ + +N V + L++ N FM+ +SGA+G+ N Q++ + G
Sbjct: 696 ERYDRVIS-IWSNAKDV-IQGKLMKSLNKRNPIFMMSDSGARGNASNFTQLAGMRG 749
Score = 39 (18.8 bits), Expect = 5.4e-07, Sum P(4) = 5.4e-07
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 411 RDSDLSLIQVLYGEDGLDVTKRQYLTDKQFSFLEDNIK 448
RD S Q G + + + DK+ FL++ +K
Sbjct: 159 RDRYGSTFQAAMGAEAIKKLLQDIDLDKEVDFLKEELK 196
Score = 39 (18.8 bits), Expect = 0.00018, Sum P(5) = 0.00018
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 889 NKLYVNDIHYMASTYGIEAAN 909
N+L DI ++ G+E N
Sbjct: 865 NQLITEDIAHIVENSGVETVN 885
>UNIPROTKB|P37871 [details] [associations]
symbol:rpoC "DNA-directed RNA polymerase subunit beta'"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0005515 "protein binding" evidence=IPI] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0046677
GO:GO:0006351 EMBL:AL009126 GenomeReviews:AL009126_GR
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
EMBL:D64127 EMBL:L24376 KO:K03046 ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 HOGENOM:HOG000218387 EMBL:L43593 PIR:G69698
RefSeq:NP_387989.2 ProteinModelPortal:P37871 SMR:P37871
DIP:DIP-49022N IntAct:P37871 PRIDE:P37871
EnsemblBacteria:EBBACT00000003012 GeneID:935977 KEGG:bsu:BSU01080
PATRIC:18971725 GenoList:BSU01080 BioCyc:BSUB:BSU01080-MONOMER
Uniprot:P37871
Length = 1199
Score = 135 (52.6 bits), Expect = 6.1e-15, Sum P(6) = 6.1e-15
Identities = 24/44 (54%), Positives = 34/44 (77%)
Query: 575 GENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREI 618
GE VG++AAQSIGEP TQ+T+ TFH G ++T G+PR++E+
Sbjct: 916 GEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL 959
Score = 92 (37.4 bits), Expect = 6.1e-15, Sum P(6) = 6.1e-15
Identities = 23/61 (37%), Positives = 33/61 (54%)
Query: 354 VDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDS 413
+ F G+ E+F R+GL DTA+KT+ SGYL R LV V D+ +R++
Sbjct: 763 IKSSFREGLTVLEYFISTHGARKGLADTALKTADSGYLTRRLVD------VAQDVIIRET 816
Query: 414 D 414
D
Sbjct: 817 D 817
Score = 64 (27.6 bits), Expect = 6.1e-15, Sum P(6) = 6.1e-15
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 958 SFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLR 1007
SF+ +F+ + A+++G+ D L V++G+ GTG+ + R
Sbjct: 1132 SFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMMKYR 1181
Score = 63 (27.2 bits), Expect = 6.1e-15, Sum P(6) = 6.1e-15
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSL 51
+AEA LM + L PKDG P+ QD V+ L+L
Sbjct: 466 QAEARILMLAAQNILNPKDGKPVVTPSQDMVLGNYYLTL 504
Score = 56 (24.8 bits), Expect = 6.1e-15, Sum P(6) = 6.1e-15
Identities = 26/116 (22%), Positives = 55/116 (47%)
Query: 217 TKIINKARRLGTEAACNA---LGLP----LDTDPEIISSQLQEAYASIPQFRAQI---DR 266
+K++++ + LG + + A +G+ LD EI+ + + QFR + +
Sbjct: 637 SKMLDRMKNLGFKYSTKAGITVGVSDIVVLDDKQEILEEAQSKVDNVMKQFRRGLITEEE 696
Query: 267 QYKSLLD--KVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLG 320
+Y+ ++ ++ Q L + L E N + M +SGA+G+ N Q++ + G
Sbjct: 697 RYERVISIWSAAKDVIQGKLMKSLDE---LNPIYMMSDSGARGNASNFTQLAGMRG 749
Score = 50 (22.7 bits), Expect = 6.1e-15, Sum P(6) = 6.1e-15
Identities = 7/28 (25%), Positives = 18/28 (64%)
Query: 912 IIREVKNVFAVYGIEVDPRHLSLVADYM 939
++ EV+ V+ + G+E+ +H+ ++ M
Sbjct: 1047 LLHEVQKVYRMQGVEIGDKHVEVMVRQM 1074
Score = 45 (20.9 bits), Expect = 7.1e-14, Sum P(6) = 7.1e-14
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 182 LLSCLAKLFTVYLQRVGFTLGVRDILVRQER 212
+L + L Y + G T+GV DI+V ++
Sbjct: 639 MLDRMKNLGFKYSTKAGITVGVSDIVVLDDK 669
>UNIPROTKB|P0A8T7 [details] [associations]
symbol:rpoC "RNA polymerase, beta' subunit" species:83333
"Escherichia coli K-12" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0016020 "membrane" evidence=IDA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005737 GO:GO:0016020
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0006351 EMBL:U00006
Gene3D:2.40.40.20 InterPro:IPR009010 PDB:3IYD PDBsum:3IYD
GO:GO:0003899 EMBL:V00339 eggNOG:COG0086 PDB:3LU0 PDBsum:3LU0
EMBL:V00340 EMBL:M38293 EMBL:M38303 KO:K03046 HOGENOM:HOG000218386
OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386 EMBL:M38305
EMBL:M38288 PIR:A00695 RefSeq:NP_418415.1 RefSeq:YP_491473.1
PDB:2AUK PDB:2LMC PDBsum:2AUK PDBsum:2LMC ProteinModelPortal:P0A8T7
SMR:P0A8T7 DIP:DIP-35803N IntAct:P0A8T7 MINT:MINT-1220667
PhosSite:P010445 PaxDb:P0A8T7 PRIDE:P0A8T7
EnsemblBacteria:EBESCT00000001546 EnsemblBacteria:EBESCT00000001547
EnsemblBacteria:EBESCT00000001548 EnsemblBacteria:EBESCT00000018189
GeneID:12933965 GeneID:948487 KEGG:ecj:Y75_p3209 KEGG:eco:b3988
PATRIC:32123497 EchoBASE:EB0888 EcoGene:EG10895
BioCyc:EcoCyc:RPOC-MONOMER BioCyc:ECOL316407:JW3951-MONOMER
BioCyc:MetaCyc:RPOC-MONOMER EvolutionaryTrace:P0A8T7
Genevestigator:P0A8T7 Uniprot:P0A8T7
Length = 1407
Score = 113 (44.8 bits), Expect = 7.8e-15, Sum P(6) = 7.8e-15
Identities = 20/32 (62%), Positives = 25/32 (78%)
Query: 571 LANPGENVGVLAAQSIGEPSTQMTLNTFHFAG 602
+ N GE +GV+AAQSIGEP TQ+T+ TFH G
Sbjct: 908 IINKGEAIGVIAAQSIGEPGTQLTMRTFHIGG 939
Score = 100 (40.3 bits), Expect = 7.8e-15, Sum P(6) = 7.8e-15
Identities = 24/72 (33%), Positives = 35/72 (48%)
Query: 354 VDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDS 413
+ F G+ ++F R+GL DTA+KT+ SGYL R LV + L V D
Sbjct: 759 ITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHE 818
Query: 414 DLSLIQVLYGED 425
+ + V+ G D
Sbjct: 819 GIMMTPVIEGGD 830
Score = 80 (33.2 bits), Expect = 7.8e-15, Sum P(6) = 7.8e-15
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 897 HYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYV 946
H + G+ A R I+ EV++V+ + G++++ +H+ ++ M T V
Sbjct: 1218 HDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIV 1267
Score = 66 (28.3 bits), Expect = 7.8e-15, Sum P(6) = 7.8e-15
Identities = 17/61 (27%), Positives = 29/61 (47%)
Query: 958 SFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNREXXXXXVE 1017
SFI +F+ + +A++ G+ D LR V++G+ GTG ++R E
Sbjct: 1318 SFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGE 1377
Query: 1018 A 1018
A
Sbjct: 1378 A 1378
Score = 57 (25.1 bits), Expect = 7.8e-15, Sum P(6) = 7.8e-15
Identities = 31/131 (23%), Positives = 62/131 (47%)
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
Y R G ++G+ D+++ + K+ +II++A E A + ++++ E
Sbjct: 631 YAARSGASVGIDDMVIPE----KKHEIISEAE---AEVA----EIQEQFQSGLVTAG--E 677
Query: 253 AYASIPQ-FRAQIDRQYKSLLDKVTNN--INQVCLPEGLIEPFPANNLQFMVESGAKGST 309
Y + + A DR K+++D + IN+ E + F N++ M +SGA+GS
Sbjct: 678 RYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVS-F--NSIYMMADSGARGSA 734
Query: 310 VNTMQISCLLG 320
Q++ + G
Sbjct: 735 AQIRQLAGMRG 745
Score = 49 (22.3 bits), Expect = 7.8e-15, Sum P(6) = 7.8e-15
Identities = 17/50 (34%), Positives = 23/50 (46%)
Query: 15 EASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNL 64
EA LM ++ L P +G P+ QD V+ G RD + E M L
Sbjct: 479 EARALMMSTNNILSPANGEPIIVPSQD-VVLGLYYMTRDCVNAKGEGMVL 527
>TIGR_CMR|CBU_0232 [details] [associations]
symbol:CBU_0232 "DNA-directed RNA polymerase beta'
subunit" species:227377 "Coxiella burnetii RSA 493" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0006351
EMBL:AE016828 GenomeReviews:AE016828_GR Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 RefSeq:NP_819276.1 ProteinModelPortal:Q83ET0
SMR:Q83ET0 PRIDE:Q83ET0 GeneID:1208113 KEGG:cbu:CBU_0232
PATRIC:17929155 BioCyc:CBUR227377:GJ7S-238-MONOMER Uniprot:Q83ET0
Length = 1414
Score = 112 (44.5 bits), Expect = 3.9e-14, Sum P(6) = 3.9e-14
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 571 LANPGENVGVLAAQSIGEPSTQMTLNTFHFAG---RGDMNVTLGIPRLREILMMATKAIK 627
+ N GE +GV+AAQSIGEP TQ+T+ TFH G R +G+ +I + K ++
Sbjct: 908 VVNVGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRATAANNIGVKSTGKIKLRNLKTVE 967
Score = 97 (39.2 bits), Expect = 3.9e-14, Sum P(6) = 3.9e-14
Identities = 23/82 (28%), Positives = 41/82 (50%)
Query: 354 VDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDS 413
+ F G+ ++F R+GL DTA+KT+ SGYL R LV + L V ++
Sbjct: 759 ITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEHDCGTEA 818
Query: 414 DLSLIQVLYGEDGLDVTKRQYL 435
+ ++ + G D ++ + + L
Sbjct: 819 SIEMMPHIEGGDVVEPLRERVL 840
Score = 72 (30.4 bits), Expect = 3.9e-14, Sum P(6) = 3.9e-14
Identities = 19/63 (30%), Positives = 29/63 (46%)
Query: 958 SFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGL-FQLRNREXXXXXV 1016
SFI +F+ + AS+ G+ D LR V++G+ GTG + + R V
Sbjct: 1317 SFISAASFQETTRVLTAASVAGKRDDLRGLKENVIVGRLIPAGTGFSYHQQRRAVAGKSV 1376
Query: 1017 EAK 1019
E K
Sbjct: 1377 EEK 1379
Score = 68 (29.0 bits), Expect = 3.9e-14, Sum P(6) = 3.9e-14
Identities = 11/45 (24%), Positives = 25/45 (55%)
Query: 895 DIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYM 939
D H + G+ A I+ EV+ V+ + G++++ +H+ ++ M
Sbjct: 1215 DPHDILRLLGVNALANYIVNEVQEVYRLQGVKINDKHIEVIVRQM 1259
Score = 63 (27.2 bits), Expect = 3.9e-14, Sum P(6) = 3.9e-14
Identities = 26/129 (20%), Positives = 60/129 (46%)
Query: 193 YLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQE 252
Y G ++G+ D++V +++ ++ ++ R + + A GL + + +
Sbjct: 631 YATHSGVSIGINDLVVPDQKEAIISRAEDEVREIEKQYAS---GL-------VTHGERRN 680
Query: 253 AYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGL-IEPFPANNLQFMVESGAKGSTVN 311
I + D+ K++++K+ + +V EG + N++ M +SGA+GS
Sbjct: 681 KVIDI--WSRTNDQVAKAMMEKIA--VEKVKDAEGKEVAQSSFNSIYMMSDSGARGSAAQ 736
Query: 312 TMQISCLLG 320
T Q++ + G
Sbjct: 737 TRQLAGMRG 745
Score = 46 (21.3 bits), Expect = 3.9e-14, Sum P(6) = 3.9e-14
Identities = 16/48 (33%), Positives = 22/48 (45%)
Query: 15 EASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYM 62
EA LM ++ L P +G P+ QD V+ G RD + E M
Sbjct: 479 EARSLMMSTNNVLHPANGEPIIVPSQD-VVLGLYYITRDRVNAKGEGM 525
>UNIPROTKB|Q9KV29 [details] [associations]
symbol:rpoC "DNA-directed RNA polymerase subunit beta'"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
KO:K03046 OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386
PIR:G82336 RefSeq:NP_229983.1 ProteinModelPortal:Q9KV29 SMR:Q9KV29
PRIDE:Q9KV29 DNASU:2615095 GeneID:2615095 KEGG:vch:VC0329
PATRIC:20079715 Uniprot:Q9KV29
Length = 1401
Score = 117 (46.2 bits), Expect = 1.7e-12, Sum P(7) = 1.7e-12
Identities = 22/32 (68%), Positives = 25/32 (78%)
Query: 571 LANPGENVGVLAAQSIGEPSTQMTLNTFHFAG 602
L N GE VGV+AAQSIGEP TQ+T+ TFH G
Sbjct: 908 LVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGG 939
Score = 90 (36.7 bits), Expect = 1.7e-12, Sum P(7) = 1.7e-12
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 354 VDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTV 404
+ F G+ ++F R+GL DTA+KT+ SGYL R LV + + V
Sbjct: 759 ITANFKEGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDVVV 809
Score = 69 (29.3 bits), Expect = 1.7e-12, Sum P(7) = 1.7e-12
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 958 SFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNRE 1010
SFI +F+ + +A++ G+ D LR V++G+ GTG ++R+
Sbjct: 1317 SFISAASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQDRQ 1369
Score = 62 (26.9 bits), Expect = 1.7e-12, Sum P(7) = 1.7e-12
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 897 HYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGT 944
H + GI A I EV+ V+ + G++++ +H+ + M T
Sbjct: 1217 HDILRLRGIHAVTTYIANEVQEVYRLQGVKINDKHIETIVRQMLRKCT 1264
Score = 58 (25.5 bits), Expect = 1.7e-12, Sum P(7) = 1.7e-12
Identities = 16/57 (28%), Positives = 32/57 (56%)
Query: 265 DRQYKSLLDKVTNNINQVCLPEGLIEPFPA-NNLQFMVESGAKGSTVNTMQISCLLG 320
DR K++++ +++ QV +G E + N++ M +SGA+GS Q++ + G
Sbjct: 691 DRVAKAMMENLSSE--QVINRQGEQEKQESFNSIYMMADSGARGSAAQIRQLAGMRG 745
Score = 46 (21.3 bits), Expect = 1.7e-12, Sum P(7) = 1.7e-12
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 15 EASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNL 64
EA LM ++ L P G P+ QD V+ G R+ + E M L
Sbjct: 479 EARTLMMSTNNILSPASGDPIIVPSQD-VVLGLYYMTREKINAKGEGMYL 527
Score = 37 (18.1 bits), Expect = 1.7e-12, Sum P(7) = 1.7e-12
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 604 GDMNVTLGIPRLREILMMATKAIKTPSM 631
G+ ++T G+PR+ + L A K K P++
Sbjct: 1130 GNKDITGGLPRVAD-LFEARKP-KEPAI 1155
>TIGR_CMR|VC_0329 [details] [associations]
symbol:VC_0329 "DNA-directed RNA polymerase, beta' subunit"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386 PIR:G82336
RefSeq:NP_229983.1 ProteinModelPortal:Q9KV29 SMR:Q9KV29
PRIDE:Q9KV29 DNASU:2615095 GeneID:2615095 KEGG:vch:VC0329
PATRIC:20079715 Uniprot:Q9KV29
Length = 1401
Score = 117 (46.2 bits), Expect = 1.7e-12, Sum P(7) = 1.7e-12
Identities = 22/32 (68%), Positives = 25/32 (78%)
Query: 571 LANPGENVGVLAAQSIGEPSTQMTLNTFHFAG 602
L N GE VGV+AAQSIGEP TQ+T+ TFH G
Sbjct: 908 LVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGG 939
Score = 90 (36.7 bits), Expect = 1.7e-12, Sum P(7) = 1.7e-12
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 354 VDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTV 404
+ F G+ ++F R+GL DTA+KT+ SGYL R LV + + V
Sbjct: 759 ITANFKEGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDVVV 809
Score = 69 (29.3 bits), Expect = 1.7e-12, Sum P(7) = 1.7e-12
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 958 SFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNRE 1010
SFI +F+ + +A++ G+ D LR V++G+ GTG ++R+
Sbjct: 1317 SFISAASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQDRQ 1369
Score = 62 (26.9 bits), Expect = 1.7e-12, Sum P(7) = 1.7e-12
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 897 HYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGT 944
H + GI A I EV+ V+ + G++++ +H+ + M T
Sbjct: 1217 HDILRLRGIHAVTTYIANEVQEVYRLQGVKINDKHIETIVRQMLRKCT 1264
Score = 58 (25.5 bits), Expect = 1.7e-12, Sum P(7) = 1.7e-12
Identities = 16/57 (28%), Positives = 32/57 (56%)
Query: 265 DRQYKSLLDKVTNNINQVCLPEGLIEPFPA-NNLQFMVESGAKGSTVNTMQISCLLG 320
DR K++++ +++ QV +G E + N++ M +SGA+GS Q++ + G
Sbjct: 691 DRVAKAMMENLSSE--QVINRQGEQEKQESFNSIYMMADSGARGSAAQIRQLAGMRG 745
Score = 46 (21.3 bits), Expect = 1.7e-12, Sum P(7) = 1.7e-12
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 15 EASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNL 64
EA LM ++ L P G P+ QD V+ G R+ + E M L
Sbjct: 479 EARTLMMSTNNILSPASGDPIIVPSQD-VVLGLYYMTREKINAKGEGMYL 527
Score = 37 (18.1 bits), Expect = 1.7e-12, Sum P(7) = 1.7e-12
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 604 GDMNVTLGIPRLREILMMATKAIKTPSM 631
G+ ++T G+PR+ + L A K K P++
Sbjct: 1130 GNKDITGGLPRVAD-LFEARKP-KEPAI 1155
>UNIPROTKB|P0A674 [details] [associations]
symbol:rpoC "DNA-directed RNA polymerase subunit beta'"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005886 GO:GO:0040007
GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0003677 GO:GO:0006351 EMBL:BX842574
Gene3D:2.40.40.20 InterPro:IPR009010 DrugBank:DB01045 GO:GO:0003899
eggNOG:COG0086 EMBL:L27989 KO:K03046 HOGENOM:HOG000218386
OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386 PIR:G70535
RefSeq:NP_215182.1 RefSeq:NP_335108.1 RefSeq:YP_006514010.1
ProteinModelPortal:P0A674 SMR:P0A674 IntAct:P0A674 PRIDE:P0A674
EnsemblBacteria:EBMYCT00000001410 EnsemblBacteria:EBMYCT00000072799
GeneID:13318555 GeneID:888177 GeneID:925980 KEGG:mtc:MT0696
KEGG:mtu:Rv0668 KEGG:mtv:RVBD_0668 PATRIC:18123251
TubercuList:Rv0668 DrugBank:DB01201 Uniprot:P0A674
Length = 1316
Score = 139 (54.0 bits), Expect = 1.2e-11, Sum P(6) = 1.2e-11
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 571 LANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPS 630
L + GE VG++AAQSIGEP TQ+T+ TFH G G+ ++T G+PR++E+ K P
Sbjct: 988 LVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGVGE-DITGGLPRVQELFEARVPRGKAPI 1046
Query: 631 MEI 633
++
Sbjct: 1047 ADV 1049
Score = 94 (38.1 bits), Expect = 1.2e-11, Sum P(6) = 1.2e-11
Identities = 30/83 (36%), Positives = 41/83 (49%)
Query: 336 RTLPSFLPYEVSPRAGGF----VDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYL 391
RTL +P+ G F V F G+ E+F + R+GL DTA++T+ SGYL
Sbjct: 815 RTLAGMKGLVTNPK-GEFIPRPVKSSFREGLTVLEYFINTHGARKGLADTALRTADSGYL 873
Query: 392 QRCLVKHLEGLTVHYDMTVRDSD 414
R LV V D+ VR+ D
Sbjct: 874 TRRLVD------VSQDVIVREHD 890
Score = 64 (27.6 bits), Expect = 1.2e-11, Sum P(6) = 1.2e-11
Identities = 22/100 (22%), Positives = 41/100 (41%)
Query: 895 DIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIR 954
D H + G ++REV+ V+ G+ + +H+ ++ M T +
Sbjct: 1117 DPHEVLRVQGPREVQIHLVREVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEF- 1175
Query: 955 LNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLG 994
L S I + FE + R+ +G E + P V++G
Sbjct: 1176 LPGSLIDRAEFEA---ENRRVVAEGGEPAAGRP---VLMG 1209
Score = 57 (25.1 bits), Expect = 5.8e-11, Sum P(6) = 5.8e-11
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 958 SFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRN 1008
S++ +F+ + A++ R D L V++G+ GTG+ + RN
Sbjct: 1219 SWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPAGTGINRYRN 1269
Score = 46 (21.3 bits), Expect = 1.2e-11, Sum P(6) = 1.2e-11
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLS 36
+AEA LM S+ L P G PL+
Sbjct: 552 QAEARILMLSSNNILSPASGRPLA 575
Score = 46 (21.3 bits), Expect = 1.2e-11, Sum P(6) = 1.2e-11
Identities = 28/121 (23%), Positives = 55/121 (45%)
Query: 206 ILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISSQLQEAYASIPQF-RAQI 264
I+V Q D+ + A R G + + +P EI+ + A QF R +
Sbjct: 707 IVVAQTVDKLKDAGFYWATRSGVTVSMADVLVP-PRKKEILDHYEERADKVEKQFQRGAL 765
Query: 265 --DRQYKSLLDKVTNNINQVCLPEGLIEPFPANN-LQFMVESGAKGSTVNTMQISCLLGQ 321
D + ++L++ ++V + L E +P +N + +V+SGA G+ T ++ + G
Sbjct: 766 NHDERNEALVEIWKEATDEV--GQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGL 823
Query: 322 I 322
+
Sbjct: 824 V 824
Score = 39 (18.8 bits), Expect = 1.2e-11, Sum P(6) = 1.2e-11
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 84 WKPMPLWTGKQVLSTVIIN-LTP 105
W+P W + L V+ N L P
Sbjct: 656 WQPGDAWMAETTLGRVMFNELLP 678
>TAIR|locus:2015163 [details] [associations]
symbol:NRPD1A "nuclear RNA polymerase D1A" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;ISS;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=RCA;IMP] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IGI;IMP] [GO:0031047 "gene silencing by RNA"
evidence=RCA;IMP] [GO:0000418 "DNA-directed RNA polymerase IV
complex" evidence=IDA;IPI] [GO:0007267 "cell-cell signaling"
evidence=RCA;IMP] [GO:0016246 "RNA interference" evidence=RCA;IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0010495
"long-distance posttranscriptional gene silencing" evidence=IMP]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006306 "DNA
methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0006354 "DNA-dependent transcription, elongation"
evidence=RCA] [GO:0009616 "virus induced gene silencing"
evidence=RCA] [GO:0010267 "production of ta-siRNAs involved in RNA
interference" evidence=RCA] [GO:0016569 "covalent chromatin
modification" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0035196 "production of miRNAs involved
in gene silencing by miRNA" evidence=RCA] [GO:0051567 "histone
H3-K9 methylation" evidence=RCA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015801
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC011000
GO:GO:0003677 GO:GO:0007267 GO:GO:0006351 GO:GO:0005507
GO:GO:0048038 GO:GO:0009308 Gene3D:3.10.450.40 GO:GO:0030422
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0006346
EMBL:AC010795 EMBL:AY826515 EMBL:DQ020657 IPI:IPI00523111
PIR:D96655 RefSeq:NP_001185298.1 RefSeq:NP_176490.2
UniGene:At.36192 ProteinModelPortal:Q9LQ02 SMR:Q9LQ02
DIP:DIP-48679N STRING:Q9LQ02 PaxDb:Q9LQ02 PRIDE:Q9LQ02
EnsemblPlants:AT1G63020.1 EnsemblPlants:AT1G63020.2 GeneID:842605
KEGG:ath:AT1G63020 TAIR:At1g63020 eggNOG:COG0086
HOGENOM:HOG000083760 InParanoid:Q9LQ02 KO:K16250 OMA:HQHSLIA
PhylomeDB:Q9LQ02 ProtClustDB:CLSN2680546 Genevestigator:Q9LQ02
GO:GO:0000418 GO:GO:0010495 InterPro:IPR021602 Pfam:PF11523
Uniprot:Q9LQ02
Length = 1453
Score = 120 (47.3 bits), Expect = 8.5e-11, Sum P(3) = 8.5e-11
Identities = 31/124 (25%), Positives = 60/124 (48%)
Query: 885 LLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSGT 944
++D + + ++I S YGI+A + + +++ + G E+ HL LVAD ++ +G
Sbjct: 1136 MIDWGRSHPDNIRQCCSVYGIDAGRSIFVANLESAVSDTGKEILREHLLLVADSLSVTGE 1195
Query: 945 YVAMNRNG------IRLNPSFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECR 998
+VA+N G + P+ + F P + +A+ +G D L+ + G+
Sbjct: 1196 FVALNAKGWSKQRQVESTPAPFTQACFSSPSQCFLKAAKEGVRDDLQGSIDALAWGKVPG 1255
Query: 999 QGTG 1002
GTG
Sbjct: 1256 FGTG 1259
Score = 96 (38.9 bits), Expect = 8.5e-11, Sum P(3) = 8.5e-11
Identities = 28/91 (30%), Positives = 41/91 (45%)
Query: 337 TLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLV 396
T S++PY G ++ F+TG+ P E F H + R+ G L R L+
Sbjct: 786 TTESYVPY-------GVIENSFLTGLNPLESFVHSVTSRDSSFSG--NADLPGTLSRRLM 836
Query: 397 KHLEGLTVHYDMTVRDS-DLSLIQVLYGEDG 426
+ + YD TVR+S L+Q Y DG
Sbjct: 837 FFMRDIYAAYDGTVRNSFGNQLVQFTYETDG 867
Score = 80 (33.2 bits), Expect = 8.5e-11, Sum P(3) = 8.5e-11
Identities = 33/116 (28%), Positives = 55/116 (47%)
Query: 13 KAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSL-RDTFLTRAEYMNLVYQALCI 71
K E L+ + Q + ++G L L QD + + +++ ++ +L RA+ L Q C
Sbjct: 464 KVELDELVALDKQLINRQNGRNLLSLGQDSLTAAYLVNVEKNCYLNRAQMQQL--QMYC- 520
Query: 72 LNTEIRTLPPTIWK--PM---PLWTGKQVLSTVI---INLT-PKDKVIIRHGELLS 118
+ PP I K P P WTG Q+ + + T P + V++ +GELLS
Sbjct: 521 ---PFQLPPPAIIKASPSSTEPQWTGMQLFGMLFPPGFDYTYPLNNVVVSNGELLS 573
Score = 47 (21.6 bits), Expect = 6.9e-06, Sum P(3) = 6.9e-06
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 285 PEGLIEPFPANNLQFMVESGAK-GSTVNTMQI 315
P L+E P NL+ ++E G+K G TM +
Sbjct: 896 PISLLETSPLLNLKNVLECGSKKGQREQTMSL 927
Score = 38 (18.4 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 76 IRTLPPTIWKPMP 88
+ TLPP W +P
Sbjct: 162 VLTLPPDYWSFLP 174
>TIGR_CMR|CPS_4768 [details] [associations]
symbol:CPS_4768 "DNA-directed RNA polymerase, beta'
subunit" species:167879 "Colwellia psychrerythraea 34H" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0006351
EMBL:CP000083 GenomeReviews:CP000083_GR Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 RefSeq:YP_271412.1 ProteinModelPortal:Q47UW0
SMR:Q47UW0 STRING:Q47UW0 PRIDE:Q47UW0 GeneID:3519900
KEGG:cps:CPS_4768 PATRIC:21472353
BioCyc:CPSY167879:GI48-4774-MONOMER Uniprot:Q47UW0
Length = 1406
Score = 112 (44.5 bits), Expect = 3.7e-10, Sum P(5) = 3.7e-10
Identities = 20/32 (62%), Positives = 25/32 (78%)
Query: 571 LANPGENVGVLAAQSIGEPSTQMTLNTFHFAG 602
+ N GE +GV+AAQSIGEP TQ+T+ TFH G
Sbjct: 908 MINQGEAIGVVAAQSIGEPGTQLTMRTFHIGG 939
Score = 102 (41.0 bits), Expect = 3.7e-10, Sum P(5) = 3.7e-10
Identities = 26/83 (31%), Positives = 43/83 (51%)
Query: 354 VDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTV-HYDMTVRD 412
+ F G+ ++F R+GL DTA+KT+ SGYL R LV + L V ++D D
Sbjct: 759 IKANFREGLTVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTNHDCGTHD 818
Query: 413 SDLSLIQVLYGEDGLDVTKRQYL 435
L + ++ G D ++ + + L
Sbjct: 819 G-LLMTPLIEGGDVVEPLRERVL 840
Score = 69 (29.3 bits), Expect = 3.7e-10, Sum P(5) = 3.7e-10
Identities = 38/155 (24%), Positives = 70/155 (45%)
Query: 864 ESKH-LLKTDGIN--VNFI-SQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNV 919
ES H +L+ G+ N+I ++ + + L + +ND H IE R +IR+ + +
Sbjct: 1214 ESPHDILRLRGVAPVANYIVNEVQEVYRLQGVKINDKH-------IEVIVRQMIRKCEIL 1266
Query: 920 FA-----VYGIEVDPRHLSLVADYMTHSGTYVA---MNRNGIR----LNPSFIQKMTFEM 967
A + G +V+ +++ + G A M GI SFI +F+
Sbjct: 1267 DAGDSTFLKGEQVEVARVNISNRELEAEGKQPAEYEMQMMGITKASLATESFISAASFQE 1326
Query: 968 PLEKIRQASMQGREDSLRAPSARVMLGQECRQGTG 1002
+ +A++ G++D LR V++G+ GTG
Sbjct: 1327 TTRVLTEAAVAGKKDGLRGLKENVIVGRLIPAGTG 1361
Score = 52 (23.4 bits), Expect = 3.7e-10, Sum P(5) = 3.7e-10
Identities = 14/53 (26%), Positives = 30/53 (56%)
Query: 269 KSLLDKVTNNINQVCLPEGLIEPFPA-NNLQFMVESGAKGSTVNTMQISCLLG 320
K+++D ++ + V +G +E + N++ M +SGA+GS Q++ + G
Sbjct: 695 KAMMDNLSKEM--VMNRDGEMEEQDSFNSIFMMADSGARGSAAQIRQLAGMRG 745
Score = 42 (19.8 bits), Expect = 3.7e-10, Sum P(5) = 3.7e-10
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 15 EASFLMNVSSQYLVPKDGSPLSGLIQDHVI 44
EA LM ++ L P +G P+ QD V+
Sbjct: 479 EARTLMMSTNNVLAPANGEPIIVPSQDVVL 508
>TIGR_CMR|SO_0225 [details] [associations]
symbol:SO_0225 "DNA-directed RNA polymerase, beta subunit"
species:211586 "Shewanella oneidensis MR-1" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0006351
EMBL:AE014299 GenomeReviews:AE014299_GR Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 RefSeq:NP_715865.1 ProteinModelPortal:Q8EK73
SMR:Q8EK73 PRIDE:Q8EK73 GeneID:1168108 KEGG:son:SO_0225
PATRIC:23520143 Uniprot:Q8EK73
Length = 1405
Score = 111 (44.1 bits), Expect = 4.6e-10, Sum P(5) = 4.6e-10
Identities = 20/32 (62%), Positives = 25/32 (78%)
Query: 571 LANPGENVGVLAAQSIGEPSTQMTLNTFHFAG 602
+ N GE +GV+AAQSIGEP TQ+T+ TFH G
Sbjct: 908 IINHGEAIGVVAAQSIGEPGTQLTMRTFHIGG 939
Score = 99 (39.9 bits), Expect = 4.6e-10, Sum P(5) = 4.6e-10
Identities = 25/78 (32%), Positives = 40/78 (51%)
Query: 358 FMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSL 417
F G+ ++F R+GL DTA+KT+ SGYL R LV + L V D L++
Sbjct: 763 FREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVIEDDCGTHEGLTM 822
Query: 418 IQVLYGEDGLDVTKRQYL 435
++ G D ++ + + L
Sbjct: 823 KPLIEGGDVVEPLRERVL 840
Score = 69 (29.3 bits), Expect = 4.6e-10, Sum P(5) = 4.6e-10
Identities = 35/150 (23%), Positives = 66/150 (44%)
Query: 864 ESKH-LLKTDGI-NV-NFI-SQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNV 919
E+ H +L+ GI NV N+I ++ + + L + +ND H + + +I +
Sbjct: 1215 EAAHDILRLRGIHNVANYIVNEVQDVYRLQGVKINDKHIEVIIR--QMLRKCVITAAGDS 1272
Query: 920 FAVYGIEVDPRHLSLVADYMTHSGTYVA-MNRN--GIR----LNPSFIQKMTFEMPLEKI 972
+ G +V+ + + + G A R GI SFI +F+ +
Sbjct: 1273 EFLEGEQVEVSRVKIANRELVEQGKVPATFERELLGITKASLATESFISAASFQETTRVL 1332
Query: 973 RQASMQGREDSLRAPSARVMLGQECRQGTG 1002
+A++ G+ D+LR V++G+ GTG
Sbjct: 1333 TEAAVGGKSDNLRGLKENVIVGRLIPAGTG 1362
Score = 50 (22.7 bits), Expect = 4.6e-10, Sum P(5) = 4.6e-10
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 295 NNLQFMVESGAKGSTVNTMQISCLLG 320
N++ M +SGA+GS Q++ + G
Sbjct: 720 NSIYMMADSGARGSAAQIRQLAGMRG 745
Score = 47 (21.6 bits), Expect = 4.6e-10, Sum P(5) = 4.6e-10
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 15 EASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYM 62
EA LM ++ L P +G P+ QD V+ G + R+ R E M
Sbjct: 479 EARALMMSTNNILSPANGEPVITPSQD-VVLGLYYTSRERINGRGEGM 525
>TIGR_CMR|APH_1023 [details] [associations]
symbol:APH_1023 "DNA-directed RNA polymerase, beta'
subunit" species:212042 "Anaplasma phagocytophilum HZ" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
GO:GO:0006351 EMBL:CP000235 GenomeReviews:CP000235_GR
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
KO:K03046 RefSeq:YP_505582.1 ProteinModelPortal:Q2GJ69
STRING:Q2GJ69 PRIDE:Q2GJ69 GeneID:3930013 KEGG:aph:APH_1023
PATRIC:20950796 HOGENOM:HOG000218386 OMA:DINDKHI
ProtClustDB:PRK00566 BioCyc:APHA212042:GHPM-1030-MONOMER
TIGRFAMs:TIGR02386 Uniprot:Q2GJ69
Length = 1409
Score = 108 (43.1 bits), Expect = 4.7e-10, Sum P(6) = 4.7e-10
Identities = 20/32 (62%), Positives = 25/32 (78%)
Query: 571 LANPGENVGVLAAQSIGEPSTQMTLNTFHFAG 602
L + GE VGV+AAQS+GEP TQ+T+ TFH G
Sbjct: 899 LVSIGEAVGVIAAQSVGEPGTQLTMRTFHVGG 930
Score = 90 (36.7 bits), Expect = 4.7e-10, Sum P(6) = 4.7e-10
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 358 FMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTV 404
F G+ E+F R+GL DTA+KT+ SGYL R LV + TV
Sbjct: 754 FREGLSVFEYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQDCTV 800
Score = 72 (30.4 bits), Expect = 4.7e-10, Sum P(6) = 4.7e-10
Identities = 18/76 (23%), Positives = 39/76 (51%)
Query: 864 ESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
+ KH + +G +F+ + L+D + D H + G EA +I E++ V+ +
Sbjct: 1183 KGKHTIVNEG---DFVHKGDLLMDGDP----DQHDILRVLGTEALANYMISEIQQVYRLQ 1235
Query: 924 GIEVDPRHLSLVADYM 939
G+++D +H+ ++ M
Sbjct: 1236 GVKIDNKHIEVILRQM 1251
Score = 62 (26.9 bits), Expect = 4.7e-10, Sum P(6) = 4.7e-10
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 958 SFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTG 1002
SFI +F+ + + +A+ G+ED L V++G+ GTG
Sbjct: 1309 SFISAASFQETTKVLTEAAFAGKEDPLYGLKENVIVGRLIPAGTG 1353
Score = 46 (21.3 bits), Expect = 4.7e-10, Sum P(6) = 4.7e-10
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 295 NNLQFMVESGAKGSTVNTMQISCLLG 320
N++ M SGA+GS Q++ + G
Sbjct: 711 NSIYMMANSGARGSASQMKQLAGMRG 736
Score = 38 (18.4 bits), Expect = 4.7e-10, Sum P(6) = 4.7e-10
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 15 EASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSL 51
EA LM ++ L P +G P+ +D V+ L+L
Sbjct: 480 EARVLMMSTNNILSPSNGRPIIVPSKDIVLGIYYLTL 516
>TIGR_CMR|CJE_0529 [details] [associations]
symbol:CJE_0529 "DNA-directed RNA polymerase, beta'
subunit" species:195099 "Campylobacter jejuni RM1221" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0006351
EMBL:CP000025 GenomeReviews:CP000025_GR Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
HOGENOM:HOG000218386 ProtClustDB:PRK00566 TIGRFAMs:TIGR02386
RefSeq:YP_178547.1 ProteinModelPortal:Q5HVY8 SMR:Q5HVY8
STRING:Q5HVY8 GeneID:3231290 KEGG:cjr:CJE0529 PATRIC:20042780
OMA:VIAEWDP BioCyc:CJEJ195099:GJC0-544-MONOMER Uniprot:Q5HVY8
Length = 1517
Score = 115 (45.5 bits), Expect = 6.2e-10, Sum P(5) = 6.2e-10
Identities = 21/32 (65%), Positives = 25/32 (78%)
Query: 571 LANPGENVGVLAAQSIGEPSTQMTLNTFHFAG 602
L PGE VG+++AQSIGEP TQ+TL TFH G
Sbjct: 906 LVKPGEAVGIISAQSIGEPGTQLTLRTFHSGG 937
Score = 86 (35.3 bits), Expect = 6.2e-10, Sum P(5) = 6.2e-10
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 358 FMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLV 396
F G+ E+F R+GL DTA+KT+ +GYL R L+
Sbjct: 761 FREGLNVLEYFISTHGARKGLADTALKTANAGYLTRKLI 799
Score = 66 (28.3 bits), Expect = 6.2e-10, Sum P(5) = 6.2e-10
Identities = 29/115 (25%), Positives = 48/115 (41%)
Query: 213 DRKRTKIINKARRLGTEAACNALGLPLDTDPEI--ISSQLQEAYASIPQFRAQIDRQYKS 270
DR + A + G + + +P D I Q++E S +Y
Sbjct: 631 DRLKNLGFEYATKAGISISIADIIVPNDKQKAIDEAKKQVREIQNSYNLGLITSGERYNK 690
Query: 271 LLD--KVTNNI---NQVCLPEGLIEPFPANNLQFMVESGAKGSTVNTMQISCLLG 320
++D K TNN+ + L E E F N++ M +SGA+GS Q++ + G
Sbjct: 691 IIDIWKSTNNVLSKEMMKLVEKDKEGF--NSIYMMADSGARGSAAQISQLAAMRG 743
Score = 64 (27.6 bits), Expect = 9.6e-10, Sum P(5) = 9.6e-10
Identities = 26/92 (28%), Positives = 41/92 (44%)
Query: 153 ILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDILVRQER 212
+L KK + LV V+ G E S L L L Y + G ++ + DI+V ++
Sbjct: 604 VLKKKDIAA----LVDYVYKQGGLEITASFLDRLKNLGFEYATKAGISISIADIIVPNDK 659
Query: 213 DRKRTKIINKARRLGTEAACNALGLPLDTDPE 244
K I++A++ E N+ L L T E
Sbjct: 660 Q----KAIDEAKKQVREIQ-NSYNLGLITSGE 686
Score = 63 (27.2 bits), Expect = 6.2e-10, Sum P(5) = 6.2e-10
Identities = 29/131 (22%), Positives = 52/131 (39%)
Query: 864 ESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
+SKH+ DG FI L D V H + G +A + +I E++ V+
Sbjct: 1334 KSKHIQVRDG---EFIHAGEKLTD----GVVSSHDVLKILGEKALHYYLISEIQQVYRGQ 1386
Query: 924 GIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQASMQGREDS 983
G+ + +H+ ++ M V + + + F E+I + G E +
Sbjct: 1387 GVVISDKHIEVIVSQMLRQVKVVDSGHTKF-IEGDLVSRRKFREENERIIR---MGGEPA 1442
Query: 984 LRAPSARVMLG 994
+ P V+LG
Sbjct: 1443 IAEP---VLLG 1450
Score = 62 (26.9 bits), Expect = 7.7e-10, Sum P(5) = 7.7e-10
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 958 SFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTGLFQLRN 1008
S I +F+ + + +AS+ G+ D L V+LG+ GTGL+ +N
Sbjct: 1460 SVISAASFQETTKVLTEASIAGKFDYLEDLKENVILGRMIPVGTGLYGEQN 1510
Score = 46 (21.3 bits), Expect = 6.2e-10, Sum P(5) = 6.2e-10
Identities = 20/102 (19%), Positives = 45/102 (44%)
Query: 14 AEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDT-------FLTRAEYMNLVY 66
AE LM S L+P G ++ QD V+ LSL T + + +
Sbjct: 500 AECKVLMLSSMNILLPASGKSVTVPSQDMVLGIYYLSLEKAGAKGSHKICTGIDEVMMAL 559
Query: 67 QALCI-LNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKD 107
++ C+ ++ I+T+ + + G+ ++ +++ + P++
Sbjct: 560 ESKCLDIHASIQTMVDG--RKITTTAGRLIIKSILPDFVPEN 599
>TIGR_CMR|SPO_3507 [details] [associations]
symbol:SPO_3507 "DNA-directed RNA polymerase, beta'
subunit" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
KO:K03046 HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 RefSeq:YP_168702.1 ProteinModelPortal:Q5LMQ6
SMR:Q5LMQ6 PRIDE:Q5LMQ6 GeneID:3196349 KEGG:sil:SPO3507
PATRIC:23380483 Uniprot:Q5LMQ6
Length = 1413
Score = 115 (45.5 bits), Expect = 6.7e-10, Sum P(5) = 6.7e-10
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 570 SLANPGENVGVLAAQSIGEPSTQMTLNTFHFAG 602
++ N GE VG++AAQSIGEP TQ+T+ TFH G
Sbjct: 904 TMVNQGEAVGIIAAQSIGEPGTQLTMRTFHIGG 936
Score = 86 (35.3 bits), Expect = 6.7e-10, Sum P(5) = 6.7e-10
Identities = 24/57 (42%), Positives = 30/57 (52%)
Query: 358 FMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSD 414
F G+ E+F R+GL DTA+KT+ SGYL R LV V D VR+ D
Sbjct: 760 FKEGLTVLEYFNSTHGARKGLSDTALKTANSGYLTRRLVD------VAQDCIVREHD 810
Score = 83 (34.3 bits), Expect = 6.7e-10, Sum P(5) = 6.7e-10
Identities = 22/108 (20%), Positives = 53/108 (49%)
Query: 864 ESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
+ KH+ +G +F+ + +++D N H + S G+EA +++EV+ V+ +
Sbjct: 1187 KGKHIPVQEG---DFVQKGDYIMDGNPAP----HDILSILGVEALANYMVKEVQEVYRLQ 1239
Query: 924 GIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEK 971
G++++ +H+ ++ M ++ + + L + K F+ EK
Sbjct: 1240 GVKINDKHIEVIVRQMLQKWE-ISDSGDTTLLKGEHVDKQEFDAANEK 1286
Score = 67 (28.6 bits), Expect = 2.1e-08, Sum P(5) = 2.1e-08
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 958 SFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLGQECRQGTG 1002
SFI +F+ + +AS+QG++D L V++G+ GTG
Sbjct: 1313 SFISAASFQETTRVLTEASVQGKKDKLVGLKENVIVGRLIPAGTG 1357
Score = 47 (21.6 bits), Expect = 6.7e-10, Sum P(5) = 6.7e-10
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 288 LIEPFPANNLQFMVESGAKGSTVNTMQISCLLG 320
++EP N++ M SGA+GS Q+ + G
Sbjct: 713 VMEP---NSVYMMAHSGARGSVTQMKQLGGMRG 742
Score = 43 (20.2 bits), Expect = 6.7e-10, Sum P(5) = 6.7e-10
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 15 EASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSL 51
EA LM ++ L P +G+P+ QD ++ L+L
Sbjct: 482 EARVLMMSTNNVLSPANGAPIIVPSQDMILGLYYLTL 518
>TIGR_CMR|ECH_0951 [details] [associations]
symbol:ECH_0951 "DNA-directed RNA polymerase, beta'
subunit" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
KO:K03046 HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 RefSeq:YP_507739.1 ProteinModelPortal:Q2GFP4
STRING:Q2GFP4 PRIDE:Q2GFP4 GeneID:3927754 KEGG:ech:ECH_0951
PATRIC:20577284 BioCyc:ECHA205920:GJNR-954-MONOMER Uniprot:Q2GFP4
Length = 1410
Score = 106 (42.4 bits), Expect = 2.7e-09, Sum P(5) = 2.7e-09
Identities = 19/28 (67%), Positives = 23/28 (82%)
Query: 575 GENVGVLAAQSIGEPSTQMTLNTFHFAG 602
GE VGV+AAQS+GEP TQ+T+ TFH G
Sbjct: 908 GEAVGVIAAQSVGEPGTQLTMRTFHVGG 935
Score = 92 (37.4 bits), Expect = 2.7e-09, Sum P(5) = 2.7e-09
Identities = 22/51 (43%), Positives = 29/51 (56%)
Query: 358 FMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEG-LTVHYD 407
F G+ E+F R+GL DTA+KT+ SGYL R LV + + V YD
Sbjct: 759 FREGLNVFEYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQDCIVVEYD 809
Score = 76 (31.8 bits), Expect = 2.7e-09, Sum P(5) = 2.7e-09
Identities = 18/76 (23%), Positives = 39/76 (51%)
Query: 864 ESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
+ KH + +G +F+ + L+D + D H + G+EA +I E++ V+ +
Sbjct: 1188 KGKHTIVNEG---DFVHKGDLLMDGDP----DPHDILRVLGVEALANYMISEIQQVYRLQ 1240
Query: 924 GIEVDPRHLSLVADYM 939
G+ +D +H+ ++ M
Sbjct: 1241 GVRIDNKHIEIILRQM 1256
Score = 48 (22.0 bits), Expect = 2.7e-09, Sum P(5) = 2.7e-09
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 15 EASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYM 62
EA LM ++ L P +G P+ +D V+ L+L+D + E +
Sbjct: 480 EARILMMSTNNILSPSNGKPIIVPSKDIVLGIYYLTLQDQVQSEDEIL 527
Score = 46 (21.3 bits), Expect = 2.7e-09, Sum P(5) = 2.7e-09
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 295 NNLQFMVESGAKGSTVNTMQISCLLG 320
N++ M SGA+GS Q++ + G
Sbjct: 716 NSIYMMAHSGARGSASQMKQLAGMRG 741
>TIGR_CMR|DET_0604 [details] [associations]
symbol:DET_0604 "DNA-directed RNA polymerase, beta'
subunit" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
GO:GO:0006351 EMBL:CP000027 GenomeReviews:CP000027_GR
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
KO:K03046 OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386
HOGENOM:HOG000218387 RefSeq:YP_181346.1 ProteinModelPortal:Q3Z8V3
SMR:Q3Z8V3 STRING:Q3Z8V3 PRIDE:Q3Z8V3 GeneID:3230059
KEGG:det:DET0604 PATRIC:21608279 BioCyc:DETH243164:GJNF-605-MONOMER
Uniprot:Q3Z8V3
Length = 1295
Score = 129 (50.5 bits), Expect = 3.7e-09, Sum P(4) = 3.7e-09
Identities = 25/56 (44%), Positives = 37/56 (66%)
Query: 578 VGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKTPSMEI 633
VG++AAQSIGEP TQ+TL TFH G +++T G+PR+ E+ +++ EI
Sbjct: 941 VGIIAAQSIGEPGTQLTLRTFHTGGVVGVDITTGLPRVEELFEARPPKVQSIISEI 996
Score = 83 (34.3 bits), Expect = 3.7e-09, Sum P(4) = 3.7e-09
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 361 GIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLV 396
G+ E+F R+GL DTA++TS SGYL R L+
Sbjct: 793 GLTTLEYFISTHGARKGLADTALRTSGSGYLTRRLI 828
Score = 63 (27.2 bits), Expect = 3.7e-09, Sum P(4) = 3.7e-09
Identities = 10/39 (25%), Positives = 23/39 (58%)
Query: 901 STYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYM 939
S G +A + ++ EV+ V+ G+ ++ +H+ ++A M
Sbjct: 1125 SILGRDAVQKYLVEEVQKVYYSQGVHINDKHIEVIARQM 1163
Score = 47 (21.6 bits), Expect = 3.7e-09, Sum P(4) = 3.7e-09
Identities = 21/98 (21%), Positives = 45/98 (45%)
Query: 227 GTEAACNALGLPLDTDPEIISSQLQEAYASIPQF-RAQI--DRQYKSLLDKVTNNINQVC 283
G A + + +P + +++++ + S QF R I D +Y S+++ +++
Sbjct: 678 GISIAMSDISVPREK-AKLVAAADERTAISEGQFARGLITEDERYNSIIETWMETTDRIT 736
Query: 284 LPEGLIEPFPAN-NLQFMVESGAKGSTVNTMQISCLLG 320
+ + F ++ M SGAKG+ Q++ L G
Sbjct: 737 --DAIQAGFDKQGSVYMMANSGAKGNISQIRQMAGLRG 772
>TIGR_CMR|NSE_0677 [details] [associations]
symbol:NSE_0677 "DNA-directed RNA polymerase, beta'
subunit" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0003899 eggNOG:COG0086 KO:K03046
HOGENOM:HOG000218386 TIGRFAMs:TIGR02386 OMA:VIAEWDP
RefSeq:YP_506555.1 ProteinModelPortal:Q2GD91 SMR:Q2GD91
STRING:Q2GD91 PRIDE:Q2GD91 GeneID:3931848 KEGG:nse:NSE_0677
PATRIC:22681373 BioCyc:NSEN222891:GHFU-691-MONOMER Uniprot:Q2GD91
Length = 1375
Score = 107 (42.7 bits), Expect = 1.0e-08, Sum P(3) = 1.0e-08
Identities = 20/34 (58%), Positives = 24/34 (70%)
Query: 575 GENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNV 608
GE VGV+AAQS+GEP TQ+T+ TFH G V
Sbjct: 895 GEAVGVIAAQSVGEPGTQLTMRTFHVGGAATRRV 928
Score = 86 (35.3 bits), Expect = 1.0e-08, Sum P(3) = 1.0e-08
Identities = 77/320 (24%), Positives = 129/320 (40%)
Query: 95 VLSTV-IINLTPKDKVIIRHGELLSGI--LDKKQFGSTQYGLVH-AVWDTHVTIRHGELL 150
V+ST ++N +I+ +++ G+ L ++ G + + A W+ +G++
Sbjct: 485 VMSTNNVLNPANSRPIIVPSKDIVLGVYYLSLEEKGGVVHPVTFCATWEAEHAFANGDI- 543
Query: 151 SGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAKLFTVYLQRVGFTLGVRDI---- 206
G+ K + G V T G + LL L K V + + L VRDI
Sbjct: 544 -GLHTKIRCGIELEDGVKVYTTTFGR---LQLLKILPK--GVPFESINMVLTVRDISNLV 597
Query: 207 -LVRQERDRKRT-KIINKARRLGTEAACNALGLPLDTDPEIISSQLQEAYASIPQFRAQI 264
LV + +T + + LG A + G+ D ++ E + +
Sbjct: 598 DLVYKTCGHGKTVEFADGIMELGFRYATLS-GISFGKDDMVVPPTKSEHVRRANEEVKEY 656
Query: 265 DRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMV---ESGAKGSTVNTMQISCLLG- 320
+ QY+ L N+V A ++ + ES A+ +++ M S G
Sbjct: 657 EFQYQEGLITKHEKYNKVVDAWQKCTDLVAKDMMDGISGYESVAEMNSIFMMAQSGARGS 716
Query: 321 --QI-ELEGKRPAMMV-SGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFFFHCMAGRE 376
QI +L G R M SG +P+ P +G+ G+ E+F R+
Sbjct: 717 AAQIKQLAGMRGLMAKPSGEIIPN-------PIISNLREGQ---GVL--EYFNSTHGARK 764
Query: 377 GLIDTAVKTSRSGYLQRCLV 396
GL DTA+KT+ SGYL R LV
Sbjct: 765 GLADTALKTANSGYLTRRLV 784
Score = 82 (33.9 bits), Expect = 1.0e-08, Sum P(3) = 1.0e-08
Identities = 17/72 (23%), Positives = 42/72 (58%)
Query: 864 ESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
+ +HL+ ++G +FI + L+D + D+H + G+EA +I E++ V+ +
Sbjct: 1175 KGRHLIVSEG---DFIRRGEPLMDGDP----DLHEILRVLGLEALAEYMISEIQRVYRLQ 1227
Query: 924 GIEVDPRHLSLV 935
G++++ +H+ ++
Sbjct: 1228 GVKINNKHIEVI 1239
Score = 69 (29.3 bits), Expect = 2.1e-07, Sum P(3) = 2.1e-07
Identities = 29/149 (19%), Positives = 63/149 (42%)
Query: 864 ESKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 923
E +L + + IS+ + + L + +N+ H + +V I + + +
Sbjct: 1202 EILRVLGLEALAEYMISEIQRVYRLQGVKINNKHIEVIIR--KMLQKVEITDAGDTTFLI 1259
Query: 924 GIEVDPRHLSLVADYMTHSG----TYV----AMNRNGIRLNPSFIQKMTFEMPLEKIRQA 975
G ++D + + + M G +YV + R ++ SFI +F+ + + +A
Sbjct: 1260 GEQIDKSRVERINEVMASQGLRCCSYVPVLLGITRASLQTE-SFISAASFQETTKVLTEA 1318
Query: 976 SMQGREDSLRAPSARVMLGQECRQGTGLF 1004
++ G+ D LR ++ G+ G G F
Sbjct: 1319 AVAGKVDRLRGLKENIIAGRLLPVGAGYF 1347
>UNIPROTKB|P0C507 [details] [associations]
symbol:rpoC2 "DNA-directed RNA polymerase subunit beta''"
species:4530 "Oryza sativa" [GO:0009536 "plastid" evidence=IC]
HAMAP:MF_01324 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012756 Pfam:PF04998 Pfam:PF05000 GO:GO:0009507
GO:GO:0009536 GO:GO:0003677 GO:GO:0006351 EMBL:AY522331
GO:GO:0003899 TIGRFAMs:TIGR02388 ProteinModelPortal:P0C507
Gramene:P0C507 HOGENOM:HOG000154184 Genevestigator:P0C507
Uniprot:P0C507
Length = 1513
Score = 105 (42.0 bits), Expect = 2.6e-07, Sum P(4) = 2.6e-07
Identities = 21/32 (65%), Positives = 23/32 (71%)
Query: 571 LANPGENVGVLAAQSIGEPSTQMTLNTFHFAG 602
L GE VGV+A QSIGEP TQ+TL TFH G
Sbjct: 316 LVELGEAVGVIAGQSIGEPGTQLTLRTFHTGG 347
Score = 93 (37.8 bits), Expect = 2.6e-07, Sum P(4) = 2.6e-07
Identities = 26/87 (29%), Positives = 44/87 (50%)
Query: 354 VDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDS 413
+ G+ E+ C R+G++DTAV+T+ +GYL R LV+ ++ H + VR
Sbjct: 165 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTADAGYLTRRLVEVVQ----H--IIVRRR 218
Query: 414 DLSLIQVLYGEDGLDVTKRQYLTDKQF 440
D IQ + V+ + +T+K F
Sbjct: 219 DCGTIQAI------SVSPQNGMTEKLF 239
Score = 67 (28.6 bits), Expect = 2.6e-07, Sum P(4) = 2.6e-07
Identities = 35/131 (26%), Positives = 61/131 (46%)
Query: 893 VNDIHYMASTYGIEAANR---VIIREV-----------KNVFA---VYGIEVDPRHLSLV 935
VN I + + G++ NR +IIR+V NVF+ + G+ R +
Sbjct: 1327 VNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFSPGELIGLLRAERAGRAL 1386
Query: 936 ADYMTHSGTYVAMNRNGIRLNP-SFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLG 994
+ + + + + R + LN SFI + +F+ + +A+++GR D L+ V+LG
Sbjct: 1387 DESIYYRAILLGITR--VSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLG 1444
Query: 995 QECRQGTGLFQ 1005
GTG FQ
Sbjct: 1445 GIIPVGTG-FQ 1454
Score = 49 (22.3 bits), Expect = 1.5e-05, Sum P(4) = 1.5e-05
Identities = 7/35 (20%), Positives = 22/35 (62%)
Query: 907 AANRV-IIREVKNVFAVYGIEVDPRHLSLVADYMT 940
A +R+ ++ +++ V+ G+++ RH+ ++ +T
Sbjct: 1320 AQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVT 1354
Score = 42 (19.8 bits), Expect = 2.6e-07, Sum P(4) = 2.6e-07
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 293 PANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMV 333
P+N + M SGA+G N Q+ L+G L M+
Sbjct: 124 PSNPVYLMSFSGARG---NASQVHQLVGMRGLMADPQGQMI 161
>UNIPROTKB|P0C508 [details] [associations]
symbol:rpoC2 "DNA-directed RNA polymerase subunit beta''"
species:39946 "Oryza sativa Indica Group" [GO:0009536 "plastid"
evidence=IC] HAMAP:MF_01324 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012756 Pfam:PF04998 Pfam:PF05000 GO:GO:0009507
GO:GO:0009536 GO:GO:0003677 GO:GO:0006351 EMBL:AY522329
GO:GO:0003899 ProtClustDB:CHL00117 TIGRFAMs:TIGR02388
RefSeq:YP_654208.1 ProteinModelPortal:P0C508 GeneID:4126924
Gramene:P0C508 Uniprot:P0C508
Length = 1513
Score = 105 (42.0 bits), Expect = 2.6e-07, Sum P(4) = 2.6e-07
Identities = 21/32 (65%), Positives = 23/32 (71%)
Query: 571 LANPGENVGVLAAQSIGEPSTQMTLNTFHFAG 602
L GE VGV+A QSIGEP TQ+TL TFH G
Sbjct: 316 LVELGEAVGVIAGQSIGEPGTQLTLRTFHTGG 347
Score = 93 (37.8 bits), Expect = 2.6e-07, Sum P(4) = 2.6e-07
Identities = 26/87 (29%), Positives = 44/87 (50%)
Query: 354 VDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDS 413
+ G+ E+ C R+G++DTAV+T+ +GYL R LV+ ++ H + VR
Sbjct: 165 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTADAGYLTRRLVEVVQ----H--IIVRRR 218
Query: 414 DLSLIQVLYGEDGLDVTKRQYLTDKQF 440
D IQ + V+ + +T+K F
Sbjct: 219 DCGTIQAI------SVSPQNGMTEKLF 239
Score = 67 (28.6 bits), Expect = 2.6e-07, Sum P(4) = 2.6e-07
Identities = 35/131 (26%), Positives = 61/131 (46%)
Query: 893 VNDIHYMASTYGIEAANR---VIIREV-----------KNVFA---VYGIEVDPRHLSLV 935
VN I + + G++ NR +IIR+V NVF+ + G+ R +
Sbjct: 1327 VNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFSPGELIGLLRAERAGRAL 1386
Query: 936 ADYMTHSGTYVAMNRNGIRLNP-SFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLG 994
+ + + + + R + LN SFI + +F+ + +A+++GR D L+ V+LG
Sbjct: 1387 DESIYYRAILLGITR--VSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLG 1444
Query: 995 QECRQGTGLFQ 1005
GTG FQ
Sbjct: 1445 GIIPVGTG-FQ 1454
Score = 49 (22.3 bits), Expect = 1.5e-05, Sum P(4) = 1.5e-05
Identities = 7/35 (20%), Positives = 22/35 (62%)
Query: 907 AANRV-IIREVKNVFAVYGIEVDPRHLSLVADYMT 940
A +R+ ++ +++ V+ G+++ RH+ ++ +T
Sbjct: 1320 AQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVT 1354
Score = 42 (19.8 bits), Expect = 2.6e-07, Sum P(4) = 2.6e-07
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 293 PANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMV 333
P+N + M SGA+G N Q+ L+G L M+
Sbjct: 124 PSNPVYLMSFSGARG---NASQVHQLVGMRGLMADPQGQMI 161
>UNIPROTKB|P0C509 [details] [associations]
symbol:rpoC2 "DNA-directed RNA polymerase subunit beta''"
species:39947 "Oryza sativa Japonica Group" [GO:0009536 "plastid"
evidence=IC] HAMAP:MF_01324 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012756 Pfam:PF04998 Pfam:PF05000 GO:GO:0009507
GO:GO:0009536 GO:GO:0003677 GO:GO:0006351 EMBL:X15901 EMBL:AY522330
GO:GO:0003899 eggNOG:COG0086 KO:K03046 ProtClustDB:CHL00117
TIGRFAMs:TIGR02388 PIR:JQ0215 RefSeq:NP_039375.1
ProteinModelPortal:P0C509 STRING:P0C509 GeneID:3131434
KEGG:osa:3131434 Gramene:P0C509 Uniprot:P0C509
Length = 1513
Score = 105 (42.0 bits), Expect = 2.6e-07, Sum P(4) = 2.6e-07
Identities = 21/32 (65%), Positives = 23/32 (71%)
Query: 571 LANPGENVGVLAAQSIGEPSTQMTLNTFHFAG 602
L GE VGV+A QSIGEP TQ+TL TFH G
Sbjct: 316 LVELGEAVGVIAGQSIGEPGTQLTLRTFHTGG 347
Score = 93 (37.8 bits), Expect = 2.6e-07, Sum P(4) = 2.6e-07
Identities = 26/87 (29%), Positives = 44/87 (50%)
Query: 354 VDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDS 413
+ G+ E+ C R+G++DTAV+T+ +GYL R LV+ ++ H + VR
Sbjct: 165 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTADAGYLTRRLVEVVQ----H--IIVRRR 218
Query: 414 DLSLIQVLYGEDGLDVTKRQYLTDKQF 440
D IQ + V+ + +T+K F
Sbjct: 219 DCGTIQAI------SVSPQNGMTEKLF 239
Score = 67 (28.6 bits), Expect = 2.6e-07, Sum P(4) = 2.6e-07
Identities = 35/131 (26%), Positives = 61/131 (46%)
Query: 893 VNDIHYMASTYGIEAANR---VIIREV-----------KNVFA---VYGIEVDPRHLSLV 935
VN I + + G++ NR +IIR+V NVF+ + G+ R +
Sbjct: 1327 VNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFSPGELIGLLRAERAGRAL 1386
Query: 936 ADYMTHSGTYVAMNRNGIRLNP-SFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLG 994
+ + + + + R + LN SFI + +F+ + +A+++GR D L+ V+LG
Sbjct: 1387 DESIYYRAILLGITR--VSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLG 1444
Query: 995 QECRQGTGLFQ 1005
GTG FQ
Sbjct: 1445 GIIPVGTG-FQ 1454
Score = 49 (22.3 bits), Expect = 1.5e-05, Sum P(4) = 1.5e-05
Identities = 7/35 (20%), Positives = 22/35 (62%)
Query: 907 AANRV-IIREVKNVFAVYGIEVDPRHLSLVADYMT 940
A +R+ ++ +++ V+ G+++ RH+ ++ +T
Sbjct: 1320 AQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVT 1354
Score = 42 (19.8 bits), Expect = 2.6e-07, Sum P(4) = 2.6e-07
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 293 PANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMV 333
P+N + M SGA+G N Q+ L+G L M+
Sbjct: 124 PSNPVYLMSFSGARG---NASQVHQLVGMRGLMADPQGQMI 161
>UNIPROTKB|Q6ENI2 [details] [associations]
symbol:rpoC2 "DNA-directed RNA polymerase subunit beta''"
species:4536 "Oryza nivara" [GO:0009536 "plastid" evidence=IC]
HAMAP:MF_01324 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012756 Pfam:PF04998 Pfam:PF05000 GO:GO:0009507
GO:GO:0009536 GO:GO:0003677 GO:GO:0006351 EMBL:AP006728
GO:GO:0003899 RefSeq:YP_052741.1 ProteinModelPortal:Q6ENI2
GeneID:2885930 Gramene:Q6ENI2 ProtClustDB:CHL00117
TIGRFAMs:TIGR02388 Uniprot:Q6ENI2
Length = 1513
Score = 105 (42.0 bits), Expect = 2.6e-07, Sum P(4) = 2.6e-07
Identities = 21/32 (65%), Positives = 23/32 (71%)
Query: 571 LANPGENVGVLAAQSIGEPSTQMTLNTFHFAG 602
L GE VGV+A QSIGEP TQ+TL TFH G
Sbjct: 316 LVELGEAVGVIAGQSIGEPGTQLTLRTFHTGG 347
Score = 93 (37.8 bits), Expect = 2.6e-07, Sum P(4) = 2.6e-07
Identities = 26/87 (29%), Positives = 44/87 (50%)
Query: 354 VDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDS 413
+ G+ E+ C R+G++DTAV+T+ +GYL R LV+ ++ H + VR
Sbjct: 165 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTADAGYLTRRLVEVVQ----H--IIVRRR 218
Query: 414 DLSLIQVLYGEDGLDVTKRQYLTDKQF 440
D IQ + V+ + +T+K F
Sbjct: 219 DCGTIQAI------SVSPQNGMTEKLF 239
Score = 67 (28.6 bits), Expect = 2.6e-07, Sum P(4) = 2.6e-07
Identities = 35/131 (26%), Positives = 61/131 (46%)
Query: 893 VNDIHYMASTYGIEAANR---VIIREV-----------KNVFA---VYGIEVDPRHLSLV 935
VN I + + G++ NR +IIR+V NVF+ + G+ R +
Sbjct: 1327 VNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFSPGELIGLLRAERAGRAL 1386
Query: 936 ADYMTHSGTYVAMNRNGIRLNP-SFIQKMTFEMPLEKIRQASMQGREDSLRAPSARVMLG 994
+ + + + + R + LN SFI + +F+ + +A+++GR D L+ V+LG
Sbjct: 1387 DESIYYRAILLGITR--VSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLG 1444
Query: 995 QECRQGTGLFQ 1005
GTG FQ
Sbjct: 1445 GIIPVGTG-FQ 1454
Score = 49 (22.3 bits), Expect = 1.5e-05, Sum P(4) = 1.5e-05
Identities = 7/35 (20%), Positives = 22/35 (62%)
Query: 907 AANRV-IIREVKNVFAVYGIEVDPRHLSLVADYMT 940
A +R+ ++ +++ V+ G+++ RH+ ++ +T
Sbjct: 1320 AQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVT 1354
Score = 42 (19.8 bits), Expect = 2.6e-07, Sum P(4) = 2.6e-07
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 293 PANNLQFMVESGAKGSTVNTMQISCLLGQIELEGKRPAMMV 333
P+N + M SGA+G N Q+ L+G L M+
Sbjct: 124 PSNPVYLMSFSGARG---NASQVHQLVGMRGLMADPQGQMI 161
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.136 0.401 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1020 927 0.00091 122 3 11 22 0.37 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 83
No. of states in DFA: 627 (67 KB)
Total size of DFA: 430 KB (2206 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 71.79u 0.12s 71.91t Elapsed: 00:00:10
Total cpu time: 71.83u 0.12s 71.95t Elapsed: 00:00:10
Start: Thu Aug 15 11:52:30 2013 End: Thu Aug 15 11:52:40 2013