RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16767
(1020 letters)
>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 1449
Score = 413 bits (1061), Expect = e-125
Identities = 268/1043 (25%), Positives = 434/1043 (41%), Gaps = 138/1043 (13%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLSLRDTFLTRAEYMNLVYQA 68
S +AE S L V Q + P+ P G++QD + KL+LRDTF+ + +N++Y
Sbjct: 493 SEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLY-- 550
Query: 69 LCILNTEIRTLPPTIWKPMPLWTGKQVLSTVIINLTPKDKVIIRHGELLSGILDKKQFGS 128
+ + + P I KP PLW+GKQ+LS I + + ++ + + +L K
Sbjct: 551 -WVPDWDGVIPTPAIIKPKPLWSGKQILSVAI-----PNGIHLQRFDEGTTLLSPK---- 600
Query: 129 TQYGLVHAVWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAISLLSCLAK 188
D + I G+++ G+++KK GS+ GL+H V G + L + K
Sbjct: 601 ----------DNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQK 650
Query: 189 LFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLDTDPEIISS 248
+ +L GF+ G+ D + R+ T+ I +A++ + A
Sbjct: 651 VVNFWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEA-------------- 696
Query: 249 QLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFMVESGAKGS 308
+A + + ++ + + N + NN++ MV +G+KGS
Sbjct: 697 ---QANLLTAKHGMTLRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGS 753
Query: 309 TVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMTGIQPQEFF 368
+N Q+S +GQ +EGKR A RTLP F + SP + GFV+ ++ G+ PQEFF
Sbjct: 754 FINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFF 813
Query: 369 FHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQVLYGEDGLD 428
FH M GREGLIDTAVKT+ +GY+QR LVK LE + VHYD T R+S ++IQ +YGEDG+D
Sbjct: 814 FHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMD 873
Query: 429 VTK-----------------RQYLTDKQFSFLEDNIKWICSYKVILNLLKKHP------- 464
++Y D + + + S IL LK
Sbjct: 874 AAHIEKQSLDTIGGSDAAFEKRYRVDLLNTDHTLDPSLLESGSEILGDLKLQVLLDEEYK 933
Query: 465 -LSLALLLLLTFKSSGKPNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLI 523
L L G+ N+ + + + + ++ K K + L
Sbjct: 934 QLVKDRKFLREVFVDGEANWPLPVNIRRIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQ 993
Query: 524 STFQPDAHFGSISENLADSVVKY---------------TKGRTDASHVDKFYDMIFYKNL 568
I +N V + R D I + L
Sbjct: 994 ENLLVLRGKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFL 1053
Query: 569 LSLANPGENVGVLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMMATKAIKT 628
S+ +PGE VGVLAAQSIGEP+TQMTLNTFHFAG VT G+PRL+EI + K +KT
Sbjct: 1054 RSVVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEI-LNVAKNMKT 1112
Query: 629 PSMEIPFLPDMPKLEKKANRLAKSMTRITMADVLEKVKI----KEWLEISPEPHMNYQMK 684
PS+ + P +++A + ++ T+ V +I + PE Q+
Sbjct: 1113 PSLTVYLEPGHAADQEQAKLIRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLH 1172
Query: 685 FCFIPAHMYRDKTSVKPSKIIDHFERKFLKELEVAIAKRAAQGLKNMNIEQSRDQMEDDV 744
F + + P + +R + + ++ + + I+Q+ +
Sbjct: 1173 FSLLDEEAEQSFDQQSPWLLRLELDRAAMNDKDLTMGQVGE------RIKQTFKNDLFVI 1226
Query: 745 EDDEGEGAEGAGAALGRVDVSSDEERDEEDAVQSHKKVNQEEDNDFEEPEDEERMSEREE 804
++ + + R E EED + + E+ E+ ER+ +
Sbjct: 1227 WSEDNDEKLIIRCRVVRPKSLDAETEAEEDHMLKKIENTMLENITLRGVENIERVVMMKY 1286
Query: 805 DDNTSNIGERFKIEFRDSTNVFVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNLFEEKE 864
D + + KE
Sbjct: 1287 DRKVPSPTGEYV----------------------------------------------KE 1300
Query: 865 SKHLLKTDGINVNFISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 924
+ +L+TDG+N++ + + D ++Y N + GIEA + +EV NV A G
Sbjct: 1301 PEWVLETDGVNLSEVMTVPGI-DPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDG 1359
Query: 925 IEVDPRHLSLVADYMTHSGTYVAMNRNGI-RLNPSFIQKMTFEMPLEKIRQASMQGREDS 983
V+ RH++L+ D MT G ++ R+G R N + + +FE +E + +A D
Sbjct: 1360 SYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDD 1419
Query: 984 LRAPSARVMLGQECRQGTGLFQL 1006
R S V+LGQ GTG F +
Sbjct: 1420 CRGVSENVILGQMAPIGTGAFDV 1442
>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus thermophilus
[TaxId: 274]}
Length = 1504
Score = 235 bits (601), Expect = 3e-64
Identities = 125/634 (19%), Positives = 211/634 (33%), Gaps = 117/634 (18%)
Query: 9 SHFLKAEASFLMNVSSQYLVPKDGSPLSGLIQDHVISGAKLS-----LRDTFLTRAEYMN 63
S F +AEA M + L P G PL+ +D ++ ++ + L A
Sbjct: 751 SSFAQAEARIQMLSAHNLLSPASGEPLAKPSRDIILGLYYITQVRKEKKGAGLEFATPEE 810
Query: 64 LVYQALCILNTEIRTLPPTIWKPMPLWTGKQV--LSTVIINLTPKDKVIIRHGELLSGIL 121
+ E+ P G+ + L I+ ++++
Sbjct: 811 AL---AAHERGEVALNAPIKVAGRETSVGRLKYVFANPDEALLAVAHGIVDLQDVVTVRY 867
Query: 122 DKKQFGSTQYGLVHA-VWDTHVTIRHGELLSGILDKKQFGSTQYGLVHAVWDTHGAEHAI 180
K+ ++ ++ A + V LD Q ++ LV+ + G E
Sbjct: 868 MGKRLETSPGRILFARIVAEAVEDEKVAWELIQLDVPQEKNSLKDLVYQAFLRLGMEKTA 927
Query: 181 SLLSCLAKLFTVYLQRVGFTLGVRDILVRQERDRKRTKIINKARRLGTEAACNALGLPLD 240
LL L + G T+G+ D ++ ++ + + +A R
Sbjct: 928 RLLDALKYYGFTFSTTSGITIGIDDAVI----PEEKKQYLEEADRKL------------- 970
Query: 241 TDPEIISSQLQEAYASIPQFRAQIDRQYKSLLDKVTNNINQVCLPEGLIEPFPANNLQFM 300
I + + + + QI + + +KVT + + E +P N L M
Sbjct: 971 ---LQIEQAYEMGFLTDRERYDQILQLWTETTEKVTQ-----AVFKNFEENYPFNPLYVM 1022
Query: 301 VESGAKGSTVNTMQISCLLGQIELEGKRPAMMVSGRTLPSFLPYEVSPRAGGFVDGRFMT 360
+SGA+G N QI L G L K PS +E V F
Sbjct: 1023 AQSGARG---NPQQIRQLCGLRGLMQK-----------PSGETFE------VPVRSSFRE 1062
Query: 361 GIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLTVHYDMTVRDSDLSLIQV 420
G+ E+F R+G DTA++T+ SGYL R LV +++ VR++D
Sbjct: 1063 GLTVLEYFISSHGARKGGADTALRTADSGYLTRKLVDVT------HEIVVREADCGTTN- 1115
Query: 421 LYGEDGLDVTKRQYLTDKQFSFLEDNIKWICSYKVILNLLKKHPLSLALLLLLTFKSSGK 480
+ V Q D+ L + + +L + L + L
Sbjct: 1116 -----YISVPLFQP--DEVTRSLRLRKRADIEAGLYGRVLAREVEVLGVRL--------- 1159
Query: 481 PNFIFSPHRTKFTMDLLEQWYQLDDKARKKYRKKFKACPQPLISTFQPDAHFGSISENLA 540
+MD + + + + + S +G
Sbjct: 1160 ------EEGRYLSMDDVHLLIKAAEAGEIQEVP--------VRSPLTCQTRYGVCQ---- 1201
Query: 541 DSVVKYTKGRTDASHVDKFYDMIFYKNLLSLANPGENVGVLAAQSIGEPSTQMTLNTFHF 600
K Y + GE VG++AAQSIGEP TQ+T+ TFH
Sbjct: 1202 -----------------KCYGYDLSMA--RPVSIGEAVGIVAAQSIGEPGTQLTMRTFHT 1242
Query: 601 AG-RGDMNVTLGIPRLREILMMATKAIKTPSMEI 633
G G ++T G+PR+ E+ K EI
Sbjct: 1243 GGVAGAADITQGLPRVIELFEARRPKAKAVISEI 1276
Score = 60.2 bits (145), Expect = 1e-09
Identities = 24/161 (14%), Positives = 57/161 (35%), Gaps = 41/161 (25%)
Query: 895 DIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRH----------------------- 931
D H + G EA R ++ E++ V+ G+++ +H
Sbjct: 1330 DPHQLLEAKGPEAVERYLVEEIQKVYRAQGVKLHDKHIEIVVRQMMKYVEVTDPGDSRLL 1389
Query: 932 -----------------LSLVADYMTHSGTYVAMNRNGIRLNPSFIQKMTFEMPLEKIRQ 974
++ + + + ++ + S++ +F+ + +
Sbjct: 1390 EGQVLEKWDVEALNERLIAEGKTPVAWKPLLMGVTKSALSTK-SWLSAASFQNTTHVLTE 1448
Query: 975 ASMQGREDSLRAPSARVMLGQECRQGTGLFQLRNREKKKKK 1015
A++ G++D L V+LG+ GTG +R + +K
Sbjct: 1449 AAIAGKKDELIGLKENVILGRLIPAGTGSDFVRFTQVVDQK 1489
>d1siga_ a.177.1.1 (A:) Sigma70 {Escherichia coli [TaxId: 562]}
Length = 334
Score = 36.0 bits (82), Expect = 0.019
Identities = 29/185 (15%), Positives = 65/185 (35%), Gaps = 15/185 (8%)
Query: 715 ELEVAIAKRAAQGLKNMNIEQSRD--------QMEDDVEDDEGEGAEGAGAALGRVDVSS 766
E E+ IAKR G+ + + + + VE +E ++ G VD ++
Sbjct: 2 EGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYNRVEAEEARLSD---LITGFVDPNA 58
Query: 767 DEERD-EEDAVQSHKKVNQEEDNDFEEPEDEERMSEREEDDNTSNIGERFKIEFRDSTNV 825
+E+ V S +D++ E+ ED + S +++ + E R
Sbjct: 59 EEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRA---Q 115
Query: 826 FVKDVVNQHNIVHKYSYDKKNHMWCKLLFLPSNLFEEKESKHLLKTDGINVNFISQYRHL 885
+V ++ ++ + +F L ++ + + +Q R +
Sbjct: 116 YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI 175
Query: 886 LDLNK 890
+ L
Sbjct: 176 MKLCV 180
>d1zxoa1 c.55.1.5 (A:3-106) Hypothetical protein BT3618 {Bacteroides
thetaiotaomicron [TaxId: 818]}
Length = 104
Score = 27.8 bits (62), Expect = 2.6
Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 8/78 (10%)
Query: 859 LFEEKESKHLLKTDGINVNFISQY--------RHLLDLNKLYVNDIHYMASTYGIEAANR 910
+ L T GIN F S+ L L + N +++ + E A
Sbjct: 14 VVLNGAVIKRLGTKGINPFFQSEEEIQQKLTASLLPQLPEGKFNAVYFYGAGCTPEKAPV 73
Query: 911 VIIREVKNVFAVYGIEVD 928
+ ++ + I+ +
Sbjct: 74 LRRAIADSLPVIGNIKAN 91
>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 264
Score = 28.4 bits (63), Expect = 3.8
Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 3/68 (4%)
Query: 719 AIAKR-AAQGLKNMNIEQSRDQMEDDVEDDEGEGAEGAGAALGRVDVSSDEERDE--EDA 775
A A A +G K + +++E+ + G DV++D +DE
Sbjct: 20 ATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTT 79
Query: 776 VQSHKKVN 783
+ K++
Sbjct: 80 LGKFGKLD 87
>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 321
Score = 28.1 bits (62), Expect = 5.6
Identities = 7/64 (10%), Positives = 24/64 (37%), Gaps = 8/64 (12%)
Query: 912 IIREVK--------NVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKM 963
+ +E+ N+ ++ L ++ ++++ + +N + LN I
Sbjct: 48 VKKEISILNIARHRNILHLHESFESMEELVMIFEFISGLDIFERINTSAFELNEREIVSY 107
Query: 964 TFEM 967
++
Sbjct: 108 VHQV 111
>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare
(Aplysia californica), twk43 [TaxId: 6500]}
Length = 352
Score = 28.1 bits (62), Expect = 5.9
Identities = 3/64 (4%), Positives = 22/64 (34%), Gaps = 8/64 (12%)
Query: 912 IIREVK--------NVFAVYGIEVDPRHLSLVADYMTHSGTYVAMNRNGIRLNPSFIQKM 963
+ E+ + ++ D + L+ ++++ + + +++ + +
Sbjct: 73 VKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINY 132
Query: 964 TFEM 967
+
Sbjct: 133 MRQA 136
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.394
Gapped
Lambda K H
0.267 0.0485 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,742,382
Number of extensions: 180261
Number of successful extensions: 525
Number of sequences better than 10.0: 1
Number of HSP's gapped: 515
Number of HSP's successfully gapped: 19
Length of query: 1020
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 926
Effective length of database: 1,116,976
Effective search space: 1034319776
Effective search space used: 1034319776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.7 bits)