BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16768
(154 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|357624352|gb|EHJ75158.1| putative DNA-directed RNA polymerase I largest subunit [Danaus
plexippus]
Length = 369
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/74 (72%), Positives = 67/74 (90%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 68
LKT+GIN+ +S+Y HLLDLNKLY NDIH +A+TYGIEAAN+VII+E++NVF VYGI VD
Sbjct: 224 LKTEGINIVQMSKYSHLLDLNKLYTNDIHAIANTYGIEAANKVIIKEIQNVFNVYGITVD 283
Query: 69 PRHLSLVADYMTHS 82
PRHL+LVADYMT++
Sbjct: 284 PRHLTLVADYMTYN 297
>gi|312372078|gb|EFR20121.1| hypothetical protein AND_20631 [Anopheles darlingi]
Length = 1721
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 67/77 (87%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
N + LKTDGIN++ ++++ LLDLN+LY+NDIH MA+ YGIEAA+RVI++E++NVF+VY
Sbjct: 1568 NDRLYLKTDGINISAMAKHAKLLDLNRLYMNDIHGMAARYGIEAASRVIVKEIQNVFSVY 1627
Query: 64 GIEVDPRHLSLVADYMT 80
GI +DPRHL L+ADYMT
Sbjct: 1628 GITIDPRHLLLIADYMT 1644
>gi|194757042|ref|XP_001960774.1| GF13529 [Drosophila ananassae]
gi|190622072|gb|EDV37596.1| GF13529 [Drosophila ananassae]
Length = 1643
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 63/77 (81%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
N + LLKTDGIN+ + QY +LDLN+LY NDIH +A TYGIEAA++VI++EV NVF VY
Sbjct: 1496 NDEQLLKTDGINIGEMFQYNKILDLNRLYSNDIHAIARTYGIEAASQVIVKEVSNVFKVY 1555
Query: 64 GIEVDPRHLSLVADYMT 80
GI VD RHLSL+ADYMT
Sbjct: 1556 GITVDRRHLSLIADYMT 1572
>gi|449273568|gb|EMC83052.1| DNA-directed RNA polymerase I subunit RPA1, partial [Columba livia]
Length = 910
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/88 (61%), Positives = 66/88 (75%), Gaps = 5/88 (5%)
Query: 2 ETNGKH-----LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREV 56
E+ KH +L T+GIN+ + +Y +LDLN+LY NDIH MA YGIE+A RVII+E+
Sbjct: 756 ESTNKHGEKELVLHTEGINLAELFRYSDILDLNRLYSNDIHAMAKNYGIESALRVIIKEI 815
Query: 57 KNVFAVYGIEVDPRHLSLVADYMTHSEF 84
K+VFAVYGIEVDPRHLSLVADYM F
Sbjct: 816 KDVFAVYGIEVDPRHLSLVADYMCFEGF 843
>gi|195381961|ref|XP_002049701.1| GJ20610 [Drosophila virilis]
gi|194144498|gb|EDW60894.1| GJ20610 [Drosophila virilis]
Length = 1648
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/75 (68%), Positives = 62/75 (82%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
+ LLKTDGIN+ + Q+ +LDLN+LY NDIH +A TYGIEAAN+VI++EV NVF VYGI
Sbjct: 1503 EQLLKTDGINIGEMFQHNKILDLNRLYSNDIHAIARTYGIEAANQVIVKEVSNVFKVYGI 1562
Query: 66 EVDPRHLSLVADYMT 80
VD RHLSL+ADYMT
Sbjct: 1563 TVDRRHLSLIADYMT 1577
>gi|195583416|ref|XP_002081518.1| GD25674 [Drosophila simulans]
gi|194193527|gb|EDX07103.1| GD25674 [Drosophila simulans]
Length = 1642
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/78 (65%), Positives = 64/78 (82%)
Query: 3 TNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 62
T+ + LLKTDGIN+ + Q+ +LDLN+LY NDIH +A TYGIEAA++VI++EV NVF V
Sbjct: 1494 TDDEQLLKTDGINIGEMFQHNKILDLNRLYSNDIHAIARTYGIEAASQVIVKEVSNVFKV 1553
Query: 63 YGIEVDPRHLSLVADYMT 80
YGI VD RHLSL+ADYMT
Sbjct: 1554 YGITVDRRHLSLIADYMT 1571
>gi|195334386|ref|XP_002033864.1| GM20204 [Drosophila sechellia]
gi|194125834|gb|EDW47877.1| GM20204 [Drosophila sechellia]
Length = 1585
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/78 (65%), Positives = 64/78 (82%)
Query: 3 TNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 62
T+ + LLKTDGIN+ + Q+ +LDLN+LY NDIH +A TYGIEAA++VI++EV NVF V
Sbjct: 1437 TDDEQLLKTDGINIGEMFQHNKILDLNRLYSNDIHAIARTYGIEAASQVIVKEVSNVFKV 1496
Query: 63 YGIEVDPRHLSLVADYMT 80
YGI VD RHLSL+ADYMT
Sbjct: 1497 YGITVDRRHLSLIADYMT 1514
>gi|195486012|ref|XP_002091328.1| GE12306 [Drosophila yakuba]
gi|194177429|gb|EDW91040.1| GE12306 [Drosophila yakuba]
Length = 1642
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 51/78 (65%), Positives = 64/78 (82%)
Query: 3 TNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 62
T+ + LLKTDGIN+ + Q+ +LDLN+LY NDIH +A TYGIEAA++VI++EV NVF V
Sbjct: 1494 TDDEQLLKTDGINIGEMFQHNKILDLNRLYSNDIHAIARTYGIEAASQVIVKEVSNVFKV 1553
Query: 63 YGIEVDPRHLSLVADYMT 80
YGI VD RHLSL+ADYMT
Sbjct: 1554 YGITVDRRHLSLIADYMT 1571
>gi|195431457|ref|XP_002063757.1| GK15841 [Drosophila willistoni]
gi|194159842|gb|EDW74743.1| GK15841 [Drosophila willistoni]
Length = 1649
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 51/75 (68%), Positives = 61/75 (81%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
+ LLKTDGIN+ + QY +LDLN+LY NDIH +A TYGIEAA +VI++EV NVF VYGI
Sbjct: 1504 EQLLKTDGINIGEMFQYNKILDLNRLYSNDIHAIARTYGIEAAAQVIVKEVSNVFKVYGI 1563
Query: 66 EVDPRHLSLVADYMT 80
VD RHLSL+ADYMT
Sbjct: 1564 TVDRRHLSLIADYMT 1578
>gi|170067707|ref|XP_001868588.1| DNA-directed RNA polymerase I largest subunit [Culex
quinquefasciatus]
gi|167863791|gb|EDS27174.1| DNA-directed RNA polymerase I largest subunit [Culex
quinquefasciatus]
Length = 1692
Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 63/72 (87%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 68
LKTDGINV +++Y +LDLN++Y NDI+ +A TYGIEAA+RVI++EV+NVF VYGIE++
Sbjct: 1549 LKTDGINVFAMTKYAEILDLNRMYSNDIYAVAQTYGIEAASRVIVKEVQNVFKVYGIEIN 1608
Query: 69 PRHLSLVADYMT 80
PRHL LVADYMT
Sbjct: 1609 PRHLLLVADYMT 1620
>gi|449501452|ref|XP_004176870.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
RPA1 [Taeniopygia guttata]
Length = 1636
Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 51/83 (61%), Positives = 64/83 (77%)
Query: 2 ETNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
E + +L+T+GIN+ + +Y +LDLN+LY NDIH MA YGIE+A RVII+E+K+VFA
Sbjct: 1487 EGEKESVLQTEGINLAELFKYSDILDLNRLYCNDIHAMAKNYGIESALRVIIKEIKDVFA 1546
Query: 62 VYGIEVDPRHLSLVADYMTHSEF 84
VYGI VDPRHLSLVADYM F
Sbjct: 1547 VYGIVVDPRHLSLVADYMCFEGF 1569
>gi|17647875|ref|NP_523743.1| RNA polymerase I subunit [Drosophila melanogaster]
gi|7303170|gb|AAF58234.1| RNA polymerase I subunit [Drosophila melanogaster]
Length = 1642
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 51/78 (65%), Positives = 63/78 (80%)
Query: 3 TNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 62
T+ LLKTDGIN+ + Q+ +LDLN+LY NDIH +A TYGIEAA++VI++EV NVF V
Sbjct: 1494 TDDDQLLKTDGINIGEMFQHNKILDLNRLYSNDIHAIARTYGIEAASQVIVKEVSNVFKV 1553
Query: 63 YGIEVDPRHLSLVADYMT 80
YGI VD RHLSL+ADYMT
Sbjct: 1554 YGITVDRRHLSLIADYMT 1571
>gi|91084933|ref|XP_970918.1| PREDICTED: similar to DNA-directed RNA polymerase I largest subunit
[Tribolium castaneum]
gi|270008555|gb|EFA05003.1| hypothetical protein TcasGA2_TC015082 [Tribolium castaneum]
Length = 1619
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 62/72 (86%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 68
L+TDGIN+ +S+Y LLDLN+L NDIH MA TYGIEAA ++I++EV++VF VYGI+VD
Sbjct: 1478 LRTDGINILEMSKYHALLDLNRLNCNDIHKMAETYGIEAAMKIIVKEVQDVFNVYGIKVD 1537
Query: 69 PRHLSLVADYMT 80
PRHLSL+ADYMT
Sbjct: 1538 PRHLSLIADYMT 1549
>gi|194883048|ref|XP_001975616.1| GG22417 [Drosophila erecta]
gi|190658803|gb|EDV56016.1| GG22417 [Drosophila erecta]
Length = 1642
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 50/78 (64%), Positives = 64/78 (82%)
Query: 3 TNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 62
++ + LLKTDGIN+ + Q+ +LDLN+LY NDIH +A TYGIEAA++VI++EV NVF V
Sbjct: 1494 SDDEQLLKTDGINIGEMFQHNKILDLNRLYSNDIHAIARTYGIEAASQVIVKEVSNVFKV 1553
Query: 63 YGIEVDPRHLSLVADYMT 80
YGI VD RHLSL+ADYMT
Sbjct: 1554 YGITVDRRHLSLIADYMT 1571
>gi|21464312|gb|AAM51959.1| GM01935p [Drosophila melanogaster]
Length = 542
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/74 (67%), Positives = 61/74 (82%)
Query: 7 HLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIE 66
LLKTDGIN+ + Q+ +LDLN+LY NDIH +A TYGIEAA++VI++EV NVF VYGI
Sbjct: 398 QLLKTDGINIGEMFQHNKILDLNRLYSNDIHAIARTYGIEAASQVIVKEVSNVFKVYGIT 457
Query: 67 VDPRHLSLVADYMT 80
VD RHLSL+ADYMT
Sbjct: 458 VDRRHLSLIADYMT 471
>gi|195025043|ref|XP_001985989.1| GH20789 [Drosophila grimshawi]
gi|193901989|gb|EDW00856.1| GH20789 [Drosophila grimshawi]
Length = 903
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/78 (66%), Positives = 63/78 (80%), Gaps = 1/78 (1%)
Query: 4 NG-KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 62
NG + LLKTDGIN+ + Q+ +LDLN+LY NDIH +A TYGIEAA +VI++EV NVF V
Sbjct: 755 NGDEQLLKTDGINIGEMFQHNKILDLNRLYSNDIHAIARTYGIEAAAQVIVKEVSNVFKV 814
Query: 63 YGIEVDPRHLSLVADYMT 80
YGI VD RHLSL+ADYMT
Sbjct: 815 YGITVDRRHLSLIADYMT 832
>gi|56405368|sp|P91875.2|RPA1_DROME RecName: Full=DNA-directed RNA polymerase I subunit RPA1; Short=RNA
polymerase I subunit A1; AltName: Full=DNA-directed RNA
polymerase I largest subunit; AltName: Full=DNA-directed
RNA polymerase I subunit A
Length = 1642
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/74 (67%), Positives = 61/74 (82%)
Query: 7 HLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIE 66
LLKTDGIN+ + Q+ +LDLN+LY NDIH +A TYGIEAA++VI++EV NVF VYGI
Sbjct: 1498 QLLKTDGINIGEMFQHNKILDLNRLYSNDIHAIARTYGIEAASQVIVKEVSNVFKVYGIT 1557
Query: 67 VDPRHLSLVADYMT 80
VD RHLSL+ADYMT
Sbjct: 1558 VDRRHLSLIADYMT 1571
>gi|1865779|emb|CAA70321.1| largest subunit of RNA polymerase I (A) [Drosophila melanogaster]
Length = 1644
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/74 (67%), Positives = 61/74 (82%)
Query: 7 HLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIE 66
LLKTDGIN+ + Q+ +LDLN+LY NDIH +A TYGIEAA++VI++EV NVF VYGI
Sbjct: 1500 QLLKTDGINIGEMFQHNKILDLNRLYSNDIHAIARTYGIEAASQVIVKEVSNVFKVYGIT 1559
Query: 67 VDPRHLSLVADYMT 80
VD RHLSL+ADYMT
Sbjct: 1560 VDRRHLSLIADYMT 1573
>gi|195123291|ref|XP_002006141.1| GI20875 [Drosophila mojavensis]
gi|193911209|gb|EDW10076.1| GI20875 [Drosophila mojavensis]
Length = 1649
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/75 (66%), Positives = 61/75 (81%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
+ LLKTDGIN+ + Q+ +LDLN+LY NDIH +A TYGIEAA +VI++EV NVF VYGI
Sbjct: 1504 EQLLKTDGINIGEMFQHNKILDLNRLYSNDIHAIARTYGIEAATQVIVKEVSNVFKVYGI 1563
Query: 66 EVDPRHLSLVADYMT 80
VD RHLSL+ADYMT
Sbjct: 1564 TVDRRHLSLIADYMT 1578
>gi|410955237|ref|XP_003984263.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Felis catus]
Length = 1718
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 62/73 (84%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+GIN+ + +Y +LDL++LY NDIH MA+TYGIEAA RVI +E+K+VFAVYGIEV
Sbjct: 1575 VLNTEGINLPELFKYAEVLDLSRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIEV 1634
Query: 68 DPRHLSLVADYMT 80
DPRHLSLVADYM
Sbjct: 1635 DPRHLSLVADYMC 1647
>gi|350414724|ref|XP_003490399.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Bombus
impatiens]
Length = 1713
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/77 (64%), Positives = 64/77 (83%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
NG+ +LKTDGIN+ + +Y L+LNKLY NDI+ ++ TYGIEAANRVII+EV++VF +Y
Sbjct: 1555 NGETILKTDGINIVEMFKYDKSLNLNKLYSNDIYGISQTYGIEAANRVIIKEVRDVFKMY 1614
Query: 64 GIEVDPRHLSLVADYMT 80
GI VD RHLSL+ADYMT
Sbjct: 1615 GITVDSRHLSLIADYMT 1631
>gi|340715117|ref|XP_003396066.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
RPA1-like [Bombus terrestris]
Length = 1713
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/77 (64%), Positives = 64/77 (83%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
NG+ +LKTDGIN+ + +Y L+LNKLY NDI+ ++ TYGIEAANRVII+EV++VF +Y
Sbjct: 1555 NGETILKTDGINIVEMFKYDKSLNLNKLYSNDIYGISQTYGIEAANRVIIKEVRDVFKMY 1614
Query: 64 GIEVDPRHLSLVADYMT 80
GI VD RHLSL+ADYMT
Sbjct: 1615 GITVDSRHLSLIADYMT 1631
>gi|300797776|ref|NP_001179805.1| DNA-directed RNA polymerase I subunit RPA1 [Bos taurus]
gi|296482516|tpg|DAA24631.1| TPA: DNA-directed RNA polymerase I subunit RPA1-like [Bos taurus]
Length = 1717
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 60/73 (82%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+GIN+ + +Y +LDL +LY NDIH MASTYGIEAA RVI +E+K+VFAVYGI V
Sbjct: 1574 VLNTEGINLPELFKYAEVLDLRRLYSNDIHAMASTYGIEAALRVIEKEIKDVFAVYGIAV 1633
Query: 68 DPRHLSLVADYMT 80
DPRHLSLVADYM
Sbjct: 1634 DPRHLSLVADYMC 1646
>gi|426223541|ref|XP_004005933.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
RPA1 [Ovis aries]
Length = 1720
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 60/73 (82%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+GIN+ + +Y +LDL +LY NDIH MASTYGIEAA RVI +E+K+VFAVYGI V
Sbjct: 1577 VLNTEGINLPELFKYAEVLDLRRLYSNDIHAMASTYGIEAALRVIEKEIKDVFAVYGIAV 1636
Query: 68 DPRHLSLVADYMT 80
DPRHLSLVADYM
Sbjct: 1637 DPRHLSLVADYMC 1649
>gi|348566419|ref|XP_003468999.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Cavia
porcellus]
Length = 1716
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 60/73 (82%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+GIN+ + +Y +LDL +LY NDIH MASTYGIEAA RVI +E+K+VFAVYGI V
Sbjct: 1573 VLNTEGINLPELFKYSEVLDLRRLYSNDIHAMASTYGIEAALRVIEKEIKDVFAVYGIAV 1632
Query: 68 DPRHLSLVADYMT 80
DPRHLSLVADYM
Sbjct: 1633 DPRHLSLVADYMC 1645
>gi|345483754|ref|XP_001602617.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Nasonia
vitripennis]
Length = 1706
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 65/77 (84%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
+G+ +LKTDGINV + +Y +LDL++LY NDI+ ++ TYGIEAANRVI++EVK+VF +Y
Sbjct: 1544 SGETILKTDGINVVEMFKYNEILDLHRLYSNDIYGISQTYGIEAANRVIVKEVKDVFKMY 1603
Query: 64 GIEVDPRHLSLVADYMT 80
GI VD RHLSL+ADYMT
Sbjct: 1604 GITVDTRHLSLIADYMT 1620
>gi|260798706|ref|XP_002594341.1| hypothetical protein BRAFLDRAFT_201044 [Branchiostoma floridae]
gi|229279574|gb|EEN50352.1| hypothetical protein BRAFLDRAFT_201044 [Branchiostoma floridae]
Length = 1731
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 60/73 (82%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 68
LKT+G+ + + +Y + DLNKL N IH MA+TYGIEAA R+I++E+K VFAVYGIEVD
Sbjct: 1589 LKTEGVKLQELFKYDRVFDLNKLCSNHIHAMANTYGIEAACRIIVKEIKEVFAVYGIEVD 1648
Query: 69 PRHLSLVADYMTH 81
PRHLSLVADYMT+
Sbjct: 1649 PRHLSLVADYMTY 1661
>gi|338714112|ref|XP_001916227.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
RPA1 [Equus caballus]
Length = 1720
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 60/73 (82%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+GIN+ + +Y +LDL +LY NDIH MASTYGIEAA RVI +E+K+VFAVYGI V
Sbjct: 1577 VLNTEGINLPELFKYAEVLDLRRLYSNDIHAMASTYGIEAALRVIEKEIKDVFAVYGIAV 1636
Query: 68 DPRHLSLVADYMT 80
DPRHLSLVADYM
Sbjct: 1637 DPRHLSLVADYMC 1649
>gi|292620699|ref|XP_001922839.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Danio rerio]
Length = 1693
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 61/73 (83%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+GIN++ + +Y +LDL +LY N++H MASTYGIE A RVI +E+K+VFAVYGIEV
Sbjct: 1550 MLNTEGINIHEMFKYADILDLKRLYSNEVHAMASTYGIEVALRVIEKEIKDVFAVYGIEV 1609
Query: 68 DPRHLSLVADYMT 80
DPRHLSLVADYM
Sbjct: 1610 DPRHLSLVADYMC 1622
>gi|345782345|ref|XP_532976.3| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Canis lupus
familiaris]
Length = 1717
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 61/73 (83%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+GIN+ + +Y +LDL++LY NDIH MASTYGIEAA RVI +E+++VFAVYGI V
Sbjct: 1574 VLNTEGINLPELFKYAEVLDLSRLYSNDIHAMASTYGIEAALRVIEKEIRDVFAVYGIAV 1633
Query: 68 DPRHLSLVADYMT 80
DPRHLSLVADYM
Sbjct: 1634 DPRHLSLVADYMC 1646
>gi|74140932|dbj|BAE22059.1| unnamed protein product [Mus musculus]
Length = 742
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 52/82 (63%), Positives = 64/82 (78%), Gaps = 4/82 (4%)
Query: 3 TNGKH----LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKN 58
TN K+ +L T+GIN+ + +Y +LDL +LY NDIH MA+TYGIEAA RVI +E+K+
Sbjct: 590 TNSKNEKELVLNTEGINLPELFKYSEILDLRRLYSNDIHAMANTYGIEAALRVIEKEIKD 649
Query: 59 VFAVYGIEVDPRHLSLVADYMT 80
VFAVYGI VDPRHLSLVADYM
Sbjct: 650 VFAVYGIAVDPRHLSLVADYMC 671
>gi|301615743|ref|XP_002937328.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Xenopus
(Silurana) tropicalis]
Length = 1665
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 53/90 (58%), Positives = 68/90 (75%), Gaps = 4/90 (4%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+GIN+ + +Y ++L+L +LY NDIH MA T+GIEAA RV+ RE+K+VFAVYGIEV
Sbjct: 1522 ILNTEGINLYELFKYSNILELRRLYSNDIHTMAKTFGIEAALRVVEREIKDVFAVYGIEV 1581
Query: 68 DPRHLSLVADYM----THSEFDLIIMVSKS 93
DPRHLSLVADYM T+ + I M S S
Sbjct: 1582 DPRHLSLVADYMCFEGTYKPLNRIGMQSSS 1611
>gi|301786528|ref|XP_002928679.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like
[Ailuropoda melanoleuca]
Length = 1716
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 60/73 (82%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+GIN+ + +Y +LDL +LY NDIH MASTYGIEAA RVI +E+++VFAVYGI V
Sbjct: 1573 VLNTEGINLPELFKYAEVLDLRRLYSNDIHAMASTYGIEAALRVIEKEIRDVFAVYGIAV 1632
Query: 68 DPRHLSLVADYMT 80
DPRHLSLVADYM
Sbjct: 1633 DPRHLSLVADYMC 1645
>gi|281339706|gb|EFB15290.1| hypothetical protein PANDA_018669 [Ailuropoda melanoleuca]
Length = 1692
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 60/73 (82%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+GIN+ + +Y +LDL +LY NDIH MASTYGIEAA RVI +E+++VFAVYGI V
Sbjct: 1549 VLNTEGINLPELFKYAEVLDLRRLYSNDIHAMASTYGIEAALRVIEKEIRDVFAVYGIAV 1608
Query: 68 DPRHLSLVADYMT 80
DPRHLSLVADYM
Sbjct: 1609 DPRHLSLVADYMC 1621
>gi|380020146|ref|XP_003693956.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
RPA1-like [Apis florea]
Length = 1706
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 64/77 (83%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
NG+ +LKTDGIN+ + +Y L+LN+LY NDI+ ++ TYGIEAANRVII+EV++VF +Y
Sbjct: 1551 NGETILKTDGINIIEMFKYDKSLNLNQLYSNDIYSISQTYGIEAANRVIIKEVRDVFKMY 1610
Query: 64 GIEVDPRHLSLVADYMT 80
GI VD RHLSL+ADYMT
Sbjct: 1611 GITVDSRHLSLIADYMT 1627
>gi|354499819|ref|XP_003512002.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like
[Cricetulus griseus]
Length = 1048
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 52/82 (63%), Positives = 64/82 (78%), Gaps = 4/82 (4%)
Query: 3 TNGKH----LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKN 58
TN K+ +L T+GIN+ + +Y +LDL +LY NDIH MA+TYGIEAA RVI +E+K+
Sbjct: 896 TNSKNEKELVLSTEGINLPEMFKYSEVLDLRRLYSNDIHAMANTYGIEAALRVIEKEIKD 955
Query: 59 VFAVYGIEVDPRHLSLVADYMT 80
VFAVYGI VDPRHLSLVADYM
Sbjct: 956 VFAVYGIAVDPRHLSLVADYMC 977
>gi|328784193|ref|XP_001121092.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Apis
mellifera]
Length = 1708
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 64/77 (83%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
NG+ +LKTDGIN+ + +Y L+LN+LY NDI+ ++ TYGIEAANRVII+EV++VF +Y
Sbjct: 1552 NGETILKTDGINIIEMFKYDKSLNLNQLYSNDIYSISQTYGIEAANRVIIKEVRDVFKMY 1611
Query: 64 GIEVDPRHLSLVADYMT 80
GI VD RHLSL+ADYMT
Sbjct: 1612 GITVDSRHLSLIADYMT 1628
>gi|344256333|gb|EGW12437.1| DNA-directed RNA polymerase I subunit RPA1 [Cricetulus griseus]
Length = 980
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 52/82 (63%), Positives = 64/82 (78%), Gaps = 4/82 (4%)
Query: 3 TNGKH----LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKN 58
TN K+ +L T+GIN+ + +Y +LDL +LY NDIH MA+TYGIEAA RVI +E+K+
Sbjct: 828 TNSKNEKELVLSTEGINLPEMFKYSEVLDLRRLYSNDIHAMANTYGIEAALRVIEKEIKD 887
Query: 59 VFAVYGIEVDPRHLSLVADYMT 80
VFAVYGI VDPRHLSLVADYM
Sbjct: 888 VFAVYGIAVDPRHLSLVADYMC 909
>gi|291386403|ref|XP_002709704.1| PREDICTED: DNA-directed RNA polymerase I A isoform 2 [Oryctolagus
cuniculus]
Length = 1720
Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 60/73 (82%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+GIN+ + +Y +LDL +LY NDIH MA+TYGIEAA RVI +E+K+VFAVYGI V
Sbjct: 1577 VLSTEGINLPELFKYAEILDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAV 1636
Query: 68 DPRHLSLVADYMT 80
DPRHLSLVADYM
Sbjct: 1637 DPRHLSLVADYMC 1649
>gi|291386401|ref|XP_002709703.1| PREDICTED: DNA-directed RNA polymerase I A isoform 1 [Oryctolagus
cuniculus]
Length = 1713
Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 60/73 (82%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+GIN+ + +Y +LDL +LY NDIH MA+TYGIEAA RVI +E+K+VFAVYGI V
Sbjct: 1570 VLSTEGINLPELFKYAEILDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAV 1629
Query: 68 DPRHLSLVADYMT 80
DPRHLSLVADYM
Sbjct: 1630 DPRHLSLVADYMC 1642
>gi|2330007|gb|AAB66718.1| RNA polymerase I largest subunit [Mus musculus]
Length = 1717
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 60/73 (82%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+GIN+ + +Y +LDL +LY NDIH MA+TYGIEAA RVI +E+K+VFAVYGI V
Sbjct: 1574 VLNTEGINLPELFKYSEILDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAV 1633
Query: 68 DPRHLSLVADYMT 80
DPRHLSLVADYM
Sbjct: 1634 DPRHLSLVADYMC 1646
>gi|31753226|gb|AAH53744.1| Polymerase (RNA) I polypeptide A [Mus musculus]
Length = 1717
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 60/73 (82%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+GIN+ + +Y +LDL +LY NDIH MA+TYGIEAA RVI +E+K+VFAVYGI V
Sbjct: 1574 VLNTEGINLPELFKYSEILDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAV 1633
Query: 68 DPRHLSLVADYMT 80
DPRHLSLVADYM
Sbjct: 1634 DPRHLSLVADYMC 1646
>gi|256985188|ref|NP_033114.3| DNA-directed RNA polymerase I subunit RPA1 [Mus musculus]
gi|56405300|sp|O35134.2|RPA1_MOUSE RecName: Full=DNA-directed RNA polymerase I subunit RPA1; Short=RNA
polymerase I subunit A1; AltName: Full=DNA-directed RNA
polymerase I largest subunit; AltName: Full=DNA-directed
RNA polymerase I subunit A; AltName: Full=RNA polymerase
I 194 kDa subunit; Short=RPA194
Length = 1717
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 60/73 (82%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+GIN+ + +Y +LDL +LY NDIH MA+TYGIEAA RVI +E+K+VFAVYGI V
Sbjct: 1574 VLNTEGINLPELFKYSEILDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAV 1633
Query: 68 DPRHLSLVADYMT 80
DPRHLSLVADYM
Sbjct: 1634 DPRHLSLVADYMC 1646
>gi|148666542|gb|EDK98958.1| RNA polymerase 1-4 [Mus musculus]
Length = 1717
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 60/73 (82%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+GIN+ + +Y +LDL +LY NDIH MA+TYGIEAA RVI +E+K+VFAVYGI V
Sbjct: 1574 VLNTEGINLPELFKYSEILDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAV 1633
Query: 68 DPRHLSLVADYMT 80
DPRHLSLVADYM
Sbjct: 1634 DPRHLSLVADYMC 1646
>gi|74184497|dbj|BAE27874.1| unnamed protein product [Mus musculus]
Length = 1717
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 60/73 (82%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+GIN+ + +Y +LDL +LY NDIH MA+TYGIEAA RVI +E+K+VFAVYGI V
Sbjct: 1574 VLNTEGINLPELFKYSEILDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAV 1633
Query: 68 DPRHLSLVADYMT 80
DPRHLSLVADYM
Sbjct: 1634 DPRHLSLVADYMC 1646
>gi|403303957|ref|XP_003942581.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Saimiri
boliviensis boliviensis]
Length = 1720
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/82 (63%), Positives = 64/82 (78%), Gaps = 4/82 (4%)
Query: 3 TNGKH----LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKN 58
TN K+ +L T+GIN+ + +Y +LDL +LY NDIH MA+TYGIEAA RVI +E+K+
Sbjct: 1568 TNSKNEKELVLNTEGINLPELFKYAEILDLRRLYSNDIHAMANTYGIEAALRVIEKEIKD 1627
Query: 59 VFAVYGIEVDPRHLSLVADYMT 80
VFAVYGI VDPRHLSLVADYM
Sbjct: 1628 VFAVYGIAVDPRHLSLVADYMC 1649
>gi|296223364|ref|XP_002757589.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 isoform 1
[Callithrix jacchus]
Length = 1720
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 61/73 (83%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+GIN+ + +Y +LDL++LY NDIH MA+TYGIEAA RVI +E+K+VFAVYGI V
Sbjct: 1577 VLNTEGINLPELFKYAEILDLHRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAV 1636
Query: 68 DPRHLSLVADYMT 80
DPRHLSLVADYM
Sbjct: 1637 DPRHLSLVADYMC 1649
>gi|395508814|ref|XP_003758704.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Sarcophilus
harrisii]
Length = 1708
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 49/72 (68%), Positives = 60/72 (83%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+GIN+ + +Y +LDL +LY NDIH MA+TYGIEAA RVI +E+K+VFAVYGI V
Sbjct: 1565 VLNTEGINLPELFKYADVLDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAV 1624
Query: 68 DPRHLSLVADYM 79
DPRHLSLVADYM
Sbjct: 1625 DPRHLSLVADYM 1636
>gi|345328836|ref|XP_001511429.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like
[Ornithorhynchus anatinus]
Length = 581
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/79 (64%), Positives = 63/79 (79%), Gaps = 2/79 (2%)
Query: 4 NGKH--LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
NG+ +L T+GIN+ + +Y LDL +LY NDIH MA+TYGIEAA RVI +E+K+VFA
Sbjct: 432 NGERELVLNTEGINLPELFKYASALDLQRLYSNDIHAMANTYGIEAALRVIEKEIKDVFA 491
Query: 62 VYGIEVDPRHLSLVADYMT 80
VYGI+VDPRHLSLVADYM
Sbjct: 492 VYGIQVDPRHLSLVADYMC 510
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/37 (72%), Positives = 32/37 (86%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 62
LDL +LY NDIH MA+TYGIEAA RVI +E+K+VFAV
Sbjct: 6 LDLQRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAV 42
>gi|344297574|ref|XP_003420472.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
RPA1-like [Loxodonta africana]
Length = 1711
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 60/73 (82%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+GIN+ + +Y +LDL +LY NDIH MA+TYGIEAA RVI +E+K+VFAVYGI V
Sbjct: 1568 VLNTEGINLPELFKYAEVLDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAV 1627
Query: 68 DPRHLSLVADYMT 80
DPRHLSLVADYM
Sbjct: 1628 DPRHLSLVADYMC 1640
>gi|410353619|gb|JAA43413.1| polymerase (RNA) I polypeptide A, 194kDa [Pan troglodytes]
Length = 1720
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 60/73 (82%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+GIN+ + +Y +LDL +LY NDIH MA+TYGIEAA RVI +E+K+VFAVYGI V
Sbjct: 1577 VLNTEGINLPELFKYAEVLDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAV 1636
Query: 68 DPRHLSLVADYMT 80
DPRHLSLVADYM
Sbjct: 1637 DPRHLSLVADYMC 1649
>gi|410216876|gb|JAA05657.1| polymerase (RNA) I polypeptide A, 194kDa [Pan troglodytes]
gi|410255060|gb|JAA15497.1| polymerase (RNA) I polypeptide A, 194kDa [Pan troglodytes]
gi|410306946|gb|JAA32073.1| polymerase (RNA) I polypeptide A, 194kDa [Pan troglodytes]
Length = 1720
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 60/73 (82%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+GIN+ + +Y +LDL +LY NDIH MA+TYGIEAA RVI +E+K+VFAVYGI V
Sbjct: 1577 VLNTEGINLPELFKYAEVLDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAV 1636
Query: 68 DPRHLSLVADYMT 80
DPRHLSLVADYM
Sbjct: 1637 DPRHLSLVADYMC 1649
>gi|311252217|ref|XP_003124986.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Sus scrofa]
Length = 1719
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/82 (63%), Positives = 64/82 (78%), Gaps = 4/82 (4%)
Query: 3 TNGKH----LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKN 58
TN K+ +L T+GIN+ + +Y +LDL +LY NDIH MA+TYGIEAA RVI +E+K+
Sbjct: 1567 TNSKNEKELVLNTEGINLPELFKYAEVLDLRRLYSNDIHAMANTYGIEAALRVIEKEIKD 1626
Query: 59 VFAVYGIEVDPRHLSLVADYMT 80
VFAVYGI VDPRHLSLVADYM
Sbjct: 1627 VFAVYGIAVDPRHLSLVADYMC 1648
>gi|390474234|ref|XP_003734751.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 isoform 2
[Callithrix jacchus]
Length = 1660
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 61/73 (83%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+GIN+ + +Y +LDL++LY NDIH MA+TYGIEAA RVI +E+K+VFAVYGI V
Sbjct: 1517 VLNTEGINLPELFKYAEILDLHRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAV 1576
Query: 68 DPRHLSLVADYMT 80
DPRHLSLVADYM
Sbjct: 1577 DPRHLSLVADYMC 1589
>gi|426336242|ref|XP_004029609.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Gorilla
gorilla gorilla]
Length = 1720
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 60/73 (82%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+GIN+ + +Y +LDL +LY NDIH MA+TYGIEAA RVI +E+K+VFAVYGI V
Sbjct: 1577 VLNTEGINLPELFKYAEVLDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAV 1636
Query: 68 DPRHLSLVADYMT 80
DPRHLSLVADYM
Sbjct: 1637 DPRHLSLVADYMC 1649
>gi|402891470|ref|XP_003908969.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Papio anubis]
Length = 1720
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 60/73 (82%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+GIN+ + +Y +LDL +LY NDIH MA+TYGIEAA RVI +E+K+VFAVYGI V
Sbjct: 1577 VLNTEGINLPELFKYAEVLDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAV 1636
Query: 68 DPRHLSLVADYMT 80
DPRHLSLVADYM
Sbjct: 1637 DPRHLSLVADYMC 1649
>gi|332813686|ref|XP_001135380.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 isoform 3 [Pan
troglodytes]
Length = 1720
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 60/73 (82%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+GIN+ + +Y +LDL +LY NDIH MA+TYGIEAA RVI +E+K+VFAVYGI V
Sbjct: 1577 VLNTEGINLPELFKYAEVLDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAV 1636
Query: 68 DPRHLSLVADYMT 80
DPRHLSLVADYM
Sbjct: 1637 DPRHLSLVADYMC 1649
>gi|297266454|ref|XP_002808090.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
RPA1-like [Macaca mulatta]
Length = 1722
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 60/73 (82%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+GIN+ + +Y +LDL +LY NDIH MA+TYGIEAA RVI +E+K+VFAVYGI V
Sbjct: 1579 VLNTEGINLPELFKYAEVLDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAV 1638
Query: 68 DPRHLSLVADYMT 80
DPRHLSLVADYM
Sbjct: 1639 DPRHLSLVADYMC 1651
>gi|197102302|ref|NP_001127373.1| DNA-directed RNA polymerase I subunit RPA1 [Pongo abelii]
gi|55728685|emb|CAH91082.1| hypothetical protein [Pongo abelii]
Length = 1659
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 60/73 (82%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+GIN+ + +Y +LDL +LY NDIH MA+TYGIEAA RVI +E+K+VFAVYGI V
Sbjct: 1516 VLNTEGINLPELFKYAEVLDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAV 1575
Query: 68 DPRHLSLVADYMT 80
DPRHLSLVADYM
Sbjct: 1576 DPRHLSLVADYMC 1588
>gi|355565864|gb|EHH22293.1| hypothetical protein EGK_05529 [Macaca mulatta]
Length = 1720
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 60/73 (82%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+GIN+ + +Y +LDL +LY NDIH MA+TYGIEAA RVI +E+K+VFAVYGI V
Sbjct: 1577 VLNTEGINLPELFKYAEVLDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAV 1636
Query: 68 DPRHLSLVADYMT 80
DPRHLSLVADYM
Sbjct: 1637 DPRHLSLVADYMC 1649
>gi|383417301|gb|AFH31864.1| DNA-directed RNA polymerase I subunit RPA1 [Macaca mulatta]
Length = 1720
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 60/73 (82%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+GIN+ + +Y +LDL +LY NDIH MA+TYGIEAA RVI +E+K+VFAVYGI V
Sbjct: 1577 VLNTEGINLPELFKYAEVLDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAV 1636
Query: 68 DPRHLSLVADYMT 80
DPRHLSLVADYM
Sbjct: 1637 DPRHLSLVADYMC 1649
>gi|380811490|gb|AFE77620.1| DNA-directed RNA polymerase I subunit RPA1 [Macaca mulatta]
Length = 1720
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 60/73 (82%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+GIN+ + +Y +LDL +LY NDIH MA+TYGIEAA RVI +E+K+VFAVYGI V
Sbjct: 1577 VLNTEGINLPELFKYAEVLDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAV 1636
Query: 68 DPRHLSLVADYMT 80
DPRHLSLVADYM
Sbjct: 1637 DPRHLSLVADYMC 1649
>gi|355762289|gb|EHH61926.1| hypothetical protein EGM_20072 [Macaca fascicularis]
Length = 1720
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 60/73 (82%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+GIN+ + +Y +LDL +LY NDIH MA+TYGIEAA RVI +E+K+VFAVYGI V
Sbjct: 1577 VLNTEGINLPELFKYAEVLDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAV 1636
Query: 68 DPRHLSLVADYMT 80
DPRHLSLVADYM
Sbjct: 1637 DPRHLSLVADYMC 1649
>gi|363733636|ref|XP_420851.3| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
RPA1 [Gallus gallus]
Length = 1703
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 60/73 (82%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+GIN+ + +Y +LDLN+LY NDIH MA YGIE+A RV+I+E+K+VFAVYGI V
Sbjct: 1560 ILHTEGINLAELFRYSDILDLNRLYSNDIHAMAKNYGIESALRVVIKEIKDVFAVYGIVV 1619
Query: 68 DPRHLSLVADYMT 80
DPRHLSLVADYM
Sbjct: 1620 DPRHLSLVADYMC 1632
>gi|351705321|gb|EHB08240.1| DNA-directed RNA polymerase I subunit RPA1 [Heterocephalus glaber]
Length = 1715
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 60/73 (82%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+GIN+ + +Y +LDL +LY NDIH MA+TYGIEAA RVI +E+K+VFAVYGI V
Sbjct: 1572 VLNTEGINLPELFKYSEVLDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAV 1631
Query: 68 DPRHLSLVADYMT 80
DPRHLSLVADYM
Sbjct: 1632 DPRHLSLVADYMC 1644
>gi|410035335|ref|XP_003949878.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Pan
troglodytes]
Length = 1659
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 60/73 (82%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+GIN+ + +Y +LDL +LY NDIH MA+TYGIEAA RVI +E+K+VFAVYGI V
Sbjct: 1516 VLNTEGINLPELFKYAEVLDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAV 1575
Query: 68 DPRHLSLVADYMT 80
DPRHLSLVADYM
Sbjct: 1576 DPRHLSLVADYMC 1588
>gi|307202220|gb|EFN81707.1| DNA-directed RNA polymerase I subunit RPA1 [Harpegnathos saltator]
Length = 1687
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/76 (61%), Positives = 64/76 (84%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
G+ +LKTDG+N+ + +Y +L+LNKLY NDI+ ++ TYGIEAANRVII+E+++VF +YG
Sbjct: 1542 GEMILKTDGLNIVEMFKYDSILNLNKLYSNDIYNISQTYGIEAANRVIIKEIRDVFKMYG 1601
Query: 65 IEVDPRHLSLVADYMT 80
I VD RHLSL+ADYMT
Sbjct: 1602 ITVDSRHLSLIADYMT 1617
>gi|195150452|ref|XP_002016168.1| GL11448 [Drosophila persimilis]
gi|194110015|gb|EDW32058.1| GL11448 [Drosophila persimilis]
Length = 1647
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/75 (64%), Positives = 62/75 (82%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
+ LLKTDGIN+ + ++ +LD+N+LY NDIH +A TYGIEAA++VI++EV NVF VYGI
Sbjct: 1502 EQLLKTDGINMGEMFHHKKVLDVNRLYSNDIHAIARTYGIEAASQVIVKEVSNVFKVYGI 1561
Query: 66 EVDPRHLSLVADYMT 80
VD RHLSL+ADYMT
Sbjct: 1562 TVDRRHLSLIADYMT 1576
>gi|125808018|ref|XP_001360603.1| GA10089 [Drosophila pseudoobscura pseudoobscura]
gi|54635775|gb|EAL25178.1| GA10089 [Drosophila pseudoobscura pseudoobscura]
Length = 1647
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/75 (64%), Positives = 62/75 (82%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
+ LLKTDGIN+ + ++ +LD+N+LY NDIH +A TYGIEAA++VI++EV NVF VYGI
Sbjct: 1502 EQLLKTDGINMGEMFHHKKVLDVNRLYSNDIHAIARTYGIEAASQVIVKEVSNVFKVYGI 1561
Query: 66 EVDPRHLSLVADYMT 80
VD RHLSL+ADYMT
Sbjct: 1562 TVDRRHLSLIADYMT 1576
>gi|383860778|ref|XP_003705866.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Megachile
rotundata]
Length = 1702
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/76 (65%), Positives = 62/76 (81%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
G +LKTDGIN+ + +Y LDLNKLY NDI+ ++ TYGIEAANRVI++EVK+VF +YG
Sbjct: 1545 GDTILKTDGINIIEMFKYDKSLDLNKLYSNDIYGISQTYGIEAANRVIMKEVKDVFKMYG 1604
Query: 65 IEVDPRHLSLVADYMT 80
I VD RHLSL+ADYMT
Sbjct: 1605 ITVDIRHLSLIADYMT 1620
>gi|395853511|ref|XP_003799250.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 isoform 1
[Otolemur garnettii]
Length = 1720
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 60/73 (82%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+GIN+ + +Y +LDL +LY NDIH MA+TYGIEAA RVI +E+K+VFAVYGI V
Sbjct: 1577 VLHTEGINLPELFKYAEVLDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAV 1636
Query: 68 DPRHLSLVADYMT 80
DPRHLSLVADYM
Sbjct: 1637 DPRHLSLVADYMC 1649
>gi|395853513|ref|XP_003799251.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 isoform 2
[Otolemur garnettii]
Length = 1668
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 60/73 (82%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+GIN+ + +Y +LDL +LY NDIH MA+TYGIEAA RVI +E+K+VFAVYGI V
Sbjct: 1525 VLHTEGINLPELFKYAEVLDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAV 1584
Query: 68 DPRHLSLVADYMT 80
DPRHLSLVADYM
Sbjct: 1585 DPRHLSLVADYMC 1597
>gi|405966808|gb|EKC32045.1| DNA-directed RNA polymerase I subunit RPA1 [Crassostrea gigas]
Length = 1685
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/70 (70%), Positives = 59/70 (84%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
T+GIN+ I Y +LDLN+LY NDIH +A+ YGIEAAN+VII+E+KNVFA YGIEVD R
Sbjct: 1545 TEGINILEIFLYADILDLNRLYSNDIHAIANMYGIEAANKVIIKEIKNVFAAYGIEVDYR 1604
Query: 71 HLSLVADYMT 80
HLSL+ADYMT
Sbjct: 1605 HLSLLADYMT 1614
>gi|390354095|ref|XP_794863.3| PREDICTED: DNA-directed RNA polymerase I subunit RPA1
[Strongylocentrotus purpuratus]
Length = 1738
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/79 (59%), Positives = 65/79 (82%)
Query: 2 ETNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
+ +G+ L T+G+N++ + ++ LLDLNK Y NDIH MA+ YGIEAA++ II+EV++VF+
Sbjct: 1589 QGSGETKLLTEGVNLHELYKHDKLLDLNKAYTNDIHSMANAYGIEAASKAIIKEVRDVFS 1648
Query: 62 VYGIEVDPRHLSLVADYMT 80
VYGI VDPRHLSLV+DYMT
Sbjct: 1649 VYGITVDPRHLSLVSDYMT 1667
>gi|410927310|ref|XP_003977092.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Takifugu
rubripes]
Length = 1749
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 62/73 (84%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+GINV+ + Q+ +LD+N+LY N++H MA+TYGIE A +VI +E+K+VFAVYGIEV
Sbjct: 1605 VLNTEGINVHELLQHSDVLDVNRLYSNEVHTMATTYGIEVALKVIEKEIKDVFAVYGIEV 1664
Query: 68 DPRHLSLVADYMT 80
DPRHLSLVADYM
Sbjct: 1665 DPRHLSLVADYMC 1677
>gi|444515209|gb|ELV10798.1| DNA-directed RNA polymerase I subunit RPA1 [Tupaia chinensis]
Length = 1683
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 60/73 (82%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+GIN+ + +Y +LDL +LY NDIH MA+TYGIEAA RVI +E+K+VFAVYGI V
Sbjct: 1540 VLNTEGINLPELFKYAEVLDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIVV 1599
Query: 68 DPRHLSLVADYMT 80
DPRHLSLVADYM
Sbjct: 1600 DPRHLSLVADYMC 1612
>gi|432880189|ref|XP_004073596.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Oryzias
latipes]
Length = 1705
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 62/73 (84%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+GIN++ + +Y +LDLN+LY N++H MA+TYGIE A +VI +E+K+VFAVYGIEV
Sbjct: 1556 VLNTEGINMHEMFKYGEILDLNRLYSNEVHAMANTYGIEVALKVIEKEIKDVFAVYGIEV 1615
Query: 68 DPRHLSLVADYMT 80
DPRHLSLVADYM
Sbjct: 1616 DPRHLSLVADYMC 1628
>gi|397491322|ref|XP_003816616.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Pan paniscus]
Length = 1720
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 60/73 (82%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+GIN+ + +Y ++DL +LY NDIH MA+TYGIEAA RVI +E+K+VFAVYGI V
Sbjct: 1577 VLNTEGINLPELFKYAEVVDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAV 1636
Query: 68 DPRHLSLVADYMT 80
DPRHLSLVADYM
Sbjct: 1637 DPRHLSLVADYMC 1649
>gi|157134596|ref|XP_001663321.1| DNA-directed RNA polymerase I largest subunit [Aedes aegypti]
gi|108870419|gb|EAT34644.1| AAEL013134-PA [Aedes aegypti]
Length = 1686
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 62/77 (80%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
N + LKTDGIN+ ++++ LDLN+LY NDI+ +A TYGIEAA RVI++EV+NVF VY
Sbjct: 1536 NDQLYLKTDGINIYAMTKFYKSLDLNRLYSNDIYAIAQTYGIEAAARVIVKEVQNVFKVY 1595
Query: 64 GIEVDPRHLSLVADYMT 80
GI ++PRHL LVADYMT
Sbjct: 1596 GITINPRHLLLVADYMT 1612
>gi|62988890|gb|AAY24277.1| unknown [Homo sapiens]
Length = 922
Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats.
Identities = 51/81 (62%), Positives = 64/81 (79%), Gaps = 4/81 (4%)
Query: 3 TNGKH----LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKN 58
TN K+ +L T+GIN+ + +Y +LDL +LY NDIH +A+TYGIEAA RVI +E+K+
Sbjct: 770 TNNKNEKELVLNTEGINLPELFKYAEVLDLRRLYSNDIHAIANTYGIEAALRVIEKEIKD 829
Query: 59 VFAVYGIEVDPRHLSLVADYM 79
VFAVYGI VDPRHLSLVADYM
Sbjct: 830 VFAVYGIAVDPRHLSLVADYM 850
>gi|221044872|dbj|BAH14113.1| unnamed protein product [Homo sapiens]
Length = 1086
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 60/73 (82%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+GIN+ + +Y +LDL +LY NDIH +A+TYGIEAA RVI +E+K+VFAVYGI V
Sbjct: 943 VLNTEGINLPELFKYAEVLDLRRLYSNDIHAIANTYGIEAALRVIEKEIKDVFAVYGIAV 1002
Query: 68 DPRHLSLVADYMT 80
DPRHLSLVADYM
Sbjct: 1003 DPRHLSLVADYMC 1015
>gi|221040014|dbj|BAH11770.1| unnamed protein product [Homo sapiens]
Length = 1207
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 60/73 (82%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+GIN+ + +Y +LDL +LY NDIH +A+TYGIEAA RVI +E+K+VFAVYGI V
Sbjct: 1082 VLNTEGINLPELFKYAEVLDLRRLYSNDIHAIANTYGIEAALRVIEKEIKDVFAVYGIAV 1141
Query: 68 DPRHLSLVADYMT 80
DPRHLSLVADYM
Sbjct: 1142 DPRHLSLVADYMC 1154
>gi|219518786|gb|AAI43346.1| Polymerase (RNA) I polypeptide A, 194kDa [Homo sapiens]
Length = 1720
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 60/73 (82%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+GIN+ + +Y +LDL +LY NDIH +A+TYGIEAA RVI +E+K+VFAVYGI V
Sbjct: 1577 VLNTEGINLPELFKYAEVLDLRRLYSNDIHAIANTYGIEAALRVIEKEIKDVFAVYGIAV 1636
Query: 68 DPRHLSLVADYMT 80
DPRHLSLVADYM
Sbjct: 1637 DPRHLSLVADYMC 1649
>gi|119619873|gb|EAW99467.1| polymerase (RNA) I polypeptide A, 194kDa, isoform CRA_a [Homo
sapiens]
gi|119619875|gb|EAW99469.1| polymerase (RNA) I polypeptide A, 194kDa, isoform CRA_a [Homo
sapiens]
Length = 1720
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 60/73 (82%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+GIN+ + +Y +LDL +LY NDIH +A+TYGIEAA RVI +E+K+VFAVYGI V
Sbjct: 1577 VLNTEGINLPELFKYAEVLDLRRLYSNDIHAIANTYGIEAALRVIEKEIKDVFAVYGIAV 1636
Query: 68 DPRHLSLVADYMT 80
DPRHLSLVADYM
Sbjct: 1637 DPRHLSLVADYMC 1649
>gi|103471997|ref|NP_056240.2| DNA-directed RNA polymerase I subunit RPA1 [Homo sapiens]
gi|215273873|sp|O95602.2|RPA1_HUMAN RecName: Full=DNA-directed RNA polymerase I subunit RPA1; Short=RNA
polymerase I subunit A1; AltName: Full=A190; AltName:
Full=DNA-directed RNA polymerase I largest subunit;
AltName: Full=DNA-directed RNA polymerase I subunit A;
AltName: Full=RNA polymerase I 194 kDa subunit;
Short=RPA194
gi|111599664|gb|AAI17174.1| Polymerase (RNA) I polypeptide A, 194kDa [Homo sapiens]
gi|116497177|gb|AAI26304.1| Polymerase (RNA) I polypeptide A, 194kDa [Homo sapiens]
gi|221044078|dbj|BAH13716.1| unnamed protein product [Homo sapiens]
Length = 1720
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 60/73 (82%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+GIN+ + +Y +LDL +LY NDIH +A+TYGIEAA RVI +E+K+VFAVYGI V
Sbjct: 1577 VLNTEGINLPELFKYAEVLDLRRLYSNDIHAIANTYGIEAALRVIEKEIKDVFAVYGIAV 1636
Query: 68 DPRHLSLVADYMT 80
DPRHLSLVADYM
Sbjct: 1637 DPRHLSLVADYMC 1649
>gi|149036393|gb|EDL91011.1| RNA polymerase 1-4 [Rattus norvegicus]
Length = 1716
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 60/73 (82%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+GIN+ + +Y +LDL +LY NDIH +A+TYGIEAA RVI +E+K+VFAVYGI V
Sbjct: 1573 VLNTEGINLPELFKYSEVLDLRRLYSNDIHAVANTYGIEAALRVIEKEIKDVFAVYGIAV 1632
Query: 68 DPRHLSLVADYMT 80
DPRHLSLVADYM
Sbjct: 1633 DPRHLSLVADYMC 1645
>gi|113817932|gb|AAH17115.2| POLR1A protein [Homo sapiens]
Length = 574
Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats.
Identities = 51/81 (62%), Positives = 64/81 (79%), Gaps = 4/81 (4%)
Query: 3 TNGKH----LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKN 58
TN K+ +L T+GIN+ + +Y +LDL +LY NDIH +A+TYGIEAA RVI +E+K+
Sbjct: 422 TNNKNEKELVLNTEGINLPELFKYAEVLDLRRLYSNDIHAIANTYGIEAALRVIEKEIKD 481
Query: 59 VFAVYGIEVDPRHLSLVADYM 79
VFAVYGI VDPRHLSLVADYM
Sbjct: 482 VFAVYGIAVDPRHLSLVADYM 502
>gi|13929086|ref|NP_113960.1| DNA-directed RNA polymerase I subunit RPA1 [Rattus norvegicus]
gi|3914802|sp|O54889.1|RPA1_RAT RecName: Full=DNA-directed RNA polymerase I subunit RPA1; Short=RNA
polymerase I subunit A1; AltName: Full=DNA-directed RNA
polymerase I largest subunit; AltName: Full=DNA-directed
RNA polymerase I subunit A; AltName: Full=RNA polymerase
I 194 kDa subunit; Short=A194; Short=RPA194
gi|2739050|gb|AAB94601.1| RNA polymerase I 194 kDa subunit [Rattus norvegicus]
Length = 1716
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 60/73 (82%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+GIN+ + +Y +LDL +LY NDIH +A+TYGIEAA RVI +E+K+VFAVYGI V
Sbjct: 1573 VLNTEGINLPELFKYSEVLDLRRLYSNDIHAVANTYGIEAALRVIEKEIKDVFAVYGIAV 1632
Query: 68 DPRHLSLVADYMT 80
DPRHLSLVADYM
Sbjct: 1633 DPRHLSLVADYMC 1645
>gi|148238249|ref|NP_001082182.1| polymerase (RNA) I polypeptide A, 194kDa [Xenopus laevis]
gi|18032797|gb|AAL56846.1|AF309686_1 RNA polymerase I large subunit [Xenopus laevis]
Length = 1730
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 51/90 (56%), Positives = 68/90 (75%), Gaps = 4/90 (4%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+GIN+ + +Y +LD+ +LY NDIH +A+T+GIEAA RV+ +E+K+VFAVYGIEV
Sbjct: 1587 ILNTEGINLYELFKYSSILDITRLYSNDIHAIANTFGIEAALRVVEKEIKDVFAVYGIEV 1646
Query: 68 DPRHLSLVADYM----THSEFDLIIMVSKS 93
DPRHLSLVADYM T+ + I M S S
Sbjct: 1647 DPRHLSLVADYMCFEGTYRPLNRIGMQSSS 1676
>gi|321464634|gb|EFX75641.1| hypothetical protein DAPPUDRAFT_323145 [Daphnia pulex]
Length = 1740
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 46/77 (59%), Positives = 60/77 (77%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
NG ++KTDG+N+ + Y +LDLN+LY NDIH +A YG+EAA+RVI++EV NVF VY
Sbjct: 1593 NGDIIIKTDGVNIQAMFDYAGILDLNRLYTNDIHEVAKHYGVEAASRVIVKEVNNVFKVY 1652
Query: 64 GIEVDPRHLSLVADYMT 80
GI VD RHLSL+A +MT
Sbjct: 1653 GITVDHRHLSLIASFMT 1669
>gi|10438121|dbj|BAB15171.1| unnamed protein product [Homo sapiens]
Length = 495
Score = 102 bits (253), Expect = 8e-20, Method: Composition-based stats.
Identities = 51/81 (62%), Positives = 64/81 (79%), Gaps = 4/81 (4%)
Query: 3 TNGKH----LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKN 58
TN K+ +L T+GIN+ + +Y +LDL +LY NDIH +A+TYGIEAA RVI +E+K+
Sbjct: 343 TNNKNEKELVLNTEGINLPELFKYAEVLDLRRLYSNDIHAIANTYGIEAALRVIEKEIKD 402
Query: 59 VFAVYGIEVDPRHLSLVADYM 79
VFAVYGI VDPRHLSLVADYM
Sbjct: 403 VFAVYGIAVDPRHLSLVADYM 423
>gi|328713218|ref|XP_001942957.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like
[Acyrthosiphon pisum]
Length = 1646
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 63/81 (77%), Gaps = 1/81 (1%)
Query: 2 ETNGKHLLKTDGI-NVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 60
E + K +LKT+G V + ++ ++LDLN LY NDI M +TYGIEAANRVII+EVKNVF
Sbjct: 1498 EEDDKIILKTEGSRGVAELFRFANILDLNSLYCNDIQMMLNTYGIEAANRVIIKEVKNVF 1557
Query: 61 AVYGIEVDPRHLSLVADYMTH 81
VYGI VD RHLSL+ADYMT+
Sbjct: 1558 KVYGINVDTRHLSLIADYMTY 1578
>gi|196008945|ref|XP_002114338.1| hypothetical protein TRIADDRAFT_27970 [Trichoplax adhaerens]
gi|190583357|gb|EDV23428.1| hypothetical protein TRIADDRAFT_27970 [Trichoplax adhaerens]
Length = 1724
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 61/73 (83%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 68
L TDG+N+ Q+ +++D+NKLY N+IH MASTYGIEAA R II+E++NVF VYGI+V+
Sbjct: 1580 LTTDGVNLQDTWQFANIIDVNKLYTNEIHAMASTYGIEAAYRAIIKEIENVFRVYGIDVN 1639
Query: 69 PRHLSLVADYMTH 81
RHLSL+ADYMT+
Sbjct: 1640 YRHLSLIADYMTY 1652
>gi|316997011|dbj|BAJ52633.1| RNA polymerase I largest subunit [Ephydatia fluviatilis]
Length = 1194
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 57/72 (79%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 68
LKTDGIN+ + QY ++LDL KLY N IH MA YGIEAA ++II+E+ VF VYGI+VD
Sbjct: 1052 LKTDGINLQVLWQYANILDLRKLYTNHIHAMAKIYGIEAAVKIIIKEISGVFRVYGIDVD 1111
Query: 69 PRHLSLVADYMT 80
RHLSL+ADYMT
Sbjct: 1112 YRHLSLIADYMT 1123
>gi|327275263|ref|XP_003222393.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Anolis
carolinensis]
Length = 913
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 60/72 (83%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 68
L+T+GIN+ + +Y ++D+NKLY NDIH +ASTYGIEAA +V+ +E+K+VFA YGI VD
Sbjct: 771 LQTEGINLPELFRYADIIDVNKLYCNDIHAVASTYGIEAALKVLEKEIKDVFAAYGIVVD 830
Query: 69 PRHLSLVADYMT 80
PRHLSLV+DYM
Sbjct: 831 PRHLSLVSDYMC 842
>gi|427780187|gb|JAA55545.1| Putative rna polymerase iii large subunit [Rhipicephalus pulchellus]
Length = 1339
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 58/73 (79%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+T+G+N + +Y ++DL ++Y NDIH +A+T+GIEAA I REV NVFAVYGIEV
Sbjct: 1188 MLQTEGVNFVEMFRYGEIIDLKRIYSNDIHAIANTFGIEAARTAIAREVANVFAVYGIEV 1247
Query: 68 DPRHLSLVADYMT 80
DPRHL LVADYMT
Sbjct: 1248 DPRHLLLVADYMT 1260
>gi|291229068|ref|XP_002734489.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like
[Saccoglossus kowalevskii]
Length = 183
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/77 (58%), Positives = 60/77 (77%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
GK L T+G+++ + Y +LDLNKLY NDIH MA+TYGIEAA +V+I+E++ VF YG
Sbjct: 37 GKKTLHTEGVSIMEMFTYDKILDLNKLYSNDIHAMAATYGIEAARKVLIKEIQEVFKAYG 96
Query: 65 IEVDPRHLSLVADYMTH 81
I V+ RHL+LVADYMT+
Sbjct: 97 IHVNARHLTLVADYMTY 113
>gi|156379629|ref|XP_001631559.1| predicted protein [Nematostella vectensis]
gi|156218601|gb|EDO39496.1| predicted protein [Nematostella vectensis]
Length = 1242
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 62/81 (76%)
Query: 1 METNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 60
+E +LKT+G+N+ +Y ++++++KLY NDIH +A TYGIEAA R I +EVKNVF
Sbjct: 1092 VEEKTNSVLKTEGVNLQVAFRYPNIINVDKLYTNDIHAVARTYGIEAAARAITKEVKNVF 1151
Query: 61 AVYGIEVDPRHLSLVADYMTH 81
YGI VDPRHL+LV+DYMT+
Sbjct: 1152 GGYGIHVDPRHLTLVSDYMTY 1172
>gi|427792959|gb|JAA61931.1| Putative rna polymerase iii large subunit, partial [Rhipicephalus
pulchellus]
Length = 1661
Score = 99.8 bits (247), Expect = 4e-19, Method: Composition-based stats.
Identities = 45/73 (61%), Positives = 58/73 (79%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+T+G+N + +Y ++DL ++Y NDIH +A+T+GIEAA I REV NVFAVYGIEV
Sbjct: 1510 MLQTEGVNFVEMFRYGEIIDLKRIYSNDIHAIANTFGIEAARTAIAREVANVFAVYGIEV 1569
Query: 68 DPRHLSLVADYMT 80
DPRHL LVADYMT
Sbjct: 1570 DPRHLLLVADYMT 1582
>gi|327275261|ref|XP_003222392.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Anolis
carolinensis]
Length = 1690
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 60/72 (83%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 68
L+T+GIN+ + +Y ++D+NKLY NDIH +ASTYGIEAA +V+ +E+K+VFA YGI VD
Sbjct: 1548 LQTEGINLPELFRYADIIDVNKLYCNDIHAVASTYGIEAALKVLEKEIKDVFAAYGIVVD 1607
Query: 69 PRHLSLVADYMT 80
PRHLSLV+DYM
Sbjct: 1608 PRHLSLVSDYMC 1619
>gi|307179175|gb|EFN67613.1| DNA-directed RNA polymerase I subunit RPA1 [Camponotus floridanus]
Length = 1686
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 62/73 (84%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+LKTDG+N+ + +Y +L+LN+LY NDI+ ++ TYGIEAAN+VI+REV+++F +YGI V
Sbjct: 1542 ILKTDGLNIVEMFKYDKILNLNRLYSNDIYNISLTYGIEAANKVIVREVRDIFKMYGITV 1601
Query: 68 DPRHLSLVADYMT 80
D RHLSL+ADYMT
Sbjct: 1602 DCRHLSLIADYMT 1614
>gi|449665133|ref|XP_002164942.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Hydra
magnipapillata]
Length = 1698
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 61/76 (80%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
G+ +KT+G+N+ + +Y ++L+LN +Y NDIH +A YGIEAA V+I+EV++VF VYG
Sbjct: 1551 GRLRIKTEGVNIQELWKYPNVLNLNTIYSNDIHAIAKAYGIEAARSVLIKEVQDVFQVYG 1610
Query: 65 IEVDPRHLSLVADYMT 80
I++DPRHLS++ DYMT
Sbjct: 1611 IQIDPRHLSMIGDYMT 1626
>gi|47196743|emb|CAF88534.1| unnamed protein product [Tetraodon nigroviridis]
Length = 163
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 60/72 (83%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L +GIN+N + ++ +LD+N+LY N++H MA+ YGIE A +VI +E+K+VFAVYGIEV
Sbjct: 51 VLSKEGINMNELIKHADVLDVNRLYSNEVHAMANKYGIEVALKVIEKEIKDVFAVYGIEV 110
Query: 68 DPRHLSLVADYM 79
DPRHLSLVADYM
Sbjct: 111 DPRHLSLVADYM 122
>gi|4096591|gb|AAC99959.1| DNA-directed RNA polymerase I, largest subunit [Homo sapiens]
Length = 1717
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 59/73 (80%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+GIN+ + +Y +LDL +LY NDIH +A+TYGIEA RVI +E+K+VFAVYGI V
Sbjct: 1575 VLNTEGINLPELFKYAEVLDLRRLYSNDIHAIANTYGIEAL-RVIEKEIKDVFAVYGIAV 1633
Query: 68 DPRHLSLVADYMT 80
DPRHLSLVADYM
Sbjct: 1634 DPRHLSLVADYMC 1646
>gi|443724446|gb|ELU12458.1| hypothetical protein CAPTEDRAFT_154177 [Capitella teleta]
Length = 1442
Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 59/76 (77%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
G + KT+G+N+ + ++ +LDL+KLY N+I MA YGIEAA VI++E+++VF+ YG
Sbjct: 1296 GLQVFKTEGVNMRELHRHDQILDLHKLYSNNIMAMAQVYGIEAACSVIMKEIRDVFSAYG 1355
Query: 65 IEVDPRHLSLVADYMT 80
I VDPRHLSLVADYMT
Sbjct: 1356 ITVDPRHLSLVADYMT 1371
>gi|391344300|ref|XP_003746439.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Metaseiulus
occidentalis]
Length = 1726
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 58/73 (79%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+T+G+N + +Y ++D+ ++Y NDI+ ++ +GIEAA R I++EV +VF VYGIEV
Sbjct: 1574 MLQTEGVNFQEMFKYDDIIDMRRIYSNDIYAISQVFGIEAATRAIVKEVTSVFGVYGIEV 1633
Query: 68 DPRHLSLVADYMT 80
DPRHLSLVADYMT
Sbjct: 1634 DPRHLSLVADYMT 1646
>gi|334313345|ref|XP_003339889.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
RPA1-like [Monodelphis domestica]
Length = 1831
Score = 95.1 bits (235), Expect = 9e-18, Method: Composition-based stats.
Identities = 44/55 (80%), Positives = 49/55 (89%)
Query: 25 LLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYM 79
+LDL +LY NDIH MASTYGIEAA RVI +E+K+VFAVYGI VDPRHLSLVADYM
Sbjct: 1705 ILDLRRLYSNDIHAMASTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYM 1759
>gi|326919609|ref|XP_003206072.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Meleagris
gallopavo]
Length = 1646
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/57 (73%), Positives = 49/57 (85%)
Query: 24 HLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMT 80
+LDLN+LY NDIH MA YGIE+A RV+I+E+K+VFAVYGI VDPRHLSLVADYM
Sbjct: 1519 QILDLNRLYSNDIHAMARNYGIESALRVLIKEIKDVFAVYGIVVDPRHLSLVADYMC 1575
>gi|332023928|gb|EGI64146.1| DNA-directed RNA polymerase I subunit RPA1 [Acromyrmex echinatior]
Length = 592
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 56/72 (77%), Gaps = 1/72 (1%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 68
L D I + +Y +LDLN+LY NDI+ ++ TYGIEAANRVI+RE+K+VF +YGI VD
Sbjct: 449 LNIDEIGIEMF-KYDKILDLNRLYSNDIYNISQTYGIEAANRVIVREIKDVFKMYGITVD 507
Query: 69 PRHLSLVADYMT 80
RHLSL+ADYMT
Sbjct: 508 VRHLSLIADYMT 519
>gi|198430691|ref|XP_002124424.1| PREDICTED: similar to RNA polymerase I large subunit [Ciona
intestinalis]
Length = 1547
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/80 (53%), Positives = 61/80 (76%), Gaps = 1/80 (1%)
Query: 2 ETNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
+TN +L+ T+GIN I + ++L++NKLY N +H +A YGIEAA RV+++E+ NVFA
Sbjct: 1396 DTNAVNLV-TEGINFYKIFENENILEVNKLYSNCVHSVAQMYGIEAARRVVVKEIANVFA 1454
Query: 62 VYGIEVDPRHLSLVADYMTH 81
VYGIEVD RHL+L+ DYM +
Sbjct: 1455 VYGIEVDQRHLNLIGDYMCY 1474
>gi|320163230|gb|EFW40129.1| RNA polymerase I largest subunit [Capsaspora owczarzaki ATCC 30864]
Length = 1900
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 55/73 (75%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+G+N+ + ++ ++LD+N + NDIH + +TYG+EAA RVI E+ VF VYGI V
Sbjct: 1754 VLATEGVNLQEMWKHANILDVNNILTNDIHAIKNTYGVEAARRVITNEISQVFQVYGIGV 1813
Query: 68 DPRHLSLVADYMT 80
DPRHLSL+ DYMT
Sbjct: 1814 DPRHLSLIGDYMT 1826
>gi|358337315|dbj|GAA55692.1| DNA-directed RNA polymerase I subunit RPA1 [Clonorchis sinensis]
Length = 1612
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 52/75 (69%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+ + +GIN+ I QY + DLN+LY N+I M+ TYGIEAA I +EV VF YGI V
Sbjct: 1458 IFRVEGINMAEIMQYPAVFDLNRLYTNNIAIMSQTYGIEAARAAIQKEVSGVFGHYGIYV 1517
Query: 68 DPRHLSLVADYMTHS 82
D RHLSL+ADYMT S
Sbjct: 1518 DSRHLSLIADYMTKS 1532
>gi|449437932|ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Cucumis
sativus]
Length = 1650
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 53/74 (71%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 68
L+T G++ + + + LD+ +Y NDIH M TYG+EAA IIRE++N+F YGI V+
Sbjct: 1506 LQTSGVDFKTLWEMQDELDVRYIYSNDIHAMLQTYGVEAARATIIREIQNIFTSYGISVN 1565
Query: 69 PRHLSLVADYMTHS 82
RHLSLVADYMTHS
Sbjct: 1566 IRHLSLVADYMTHS 1579
>gi|449517429|ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
RPA1-like [Cucumis sativus]
Length = 1652
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 53/74 (71%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 68
L+T G++ + + + LD+ +Y NDIH M TYG+EAA IIRE++N+F YGI V+
Sbjct: 1508 LQTSGVDFKTLWEMQDELDVRYIYSNDIHAMLQTYGVEAARATIIREIQNIFTSYGISVN 1567
Query: 69 PRHLSLVADYMTHS 82
RHLSLVADYMTHS
Sbjct: 1568 IRHLSLVADYMTHS 1581
>gi|242012717|ref|XP_002427074.1| DNA-directed RNA polymerase I largest subunit, putative [Pediculus
humanus corporis]
gi|212511332|gb|EEB14336.1| DNA-directed RNA polymerase I largest subunit, putative [Pediculus
humanus corporis]
Length = 1659
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 68/100 (68%), Gaps = 4/100 (4%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
+G+ LKT+G+N N + ++ ++D+N+LY ND++ + T GIEA R+I++E+ +VF VY
Sbjct: 1511 SGELHLKTEGVNFNEMFKFYKMIDINRLYSNDVNKVVETLGIEAGVRIIVKELNDVFGVY 1570
Query: 64 GIEVDPRHLSLVADYMT----HSEFDLIIMVSKSWMLDEV 99
GI VD RHL LVADYMT +S F+ I + S L ++
Sbjct: 1571 GITVDHRHLLLVADYMTNQGNYSPFNRIGLADSSSPLQQM 1610
>gi|47214109|emb|CAG00674.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1949
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/57 (68%), Positives = 49/57 (85%)
Query: 24 HLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMT 80
+LD+N+LY N++H MA+ YGIE A +VI +E+K+VFAVYGIEVDPRHLSLVADYM
Sbjct: 1549 QVLDVNRLYSNEVHAMANKYGIEVALKVIEKEIKDVFAVYGIEVDPRHLSLVADYMC 1605
>gi|340376989|ref|XP_003387013.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Amphimedon
queenslandica]
Length = 1309
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 58/76 (76%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
G + LKT+G+N+ + ++ LL++ K Y N+IH +AST+GIEAA II+EV +VF VYG
Sbjct: 1162 GLYRLKTEGVNMQELWKHSDLLNVRKAYTNNIHIIASTFGIEAAAVAIIKEVSSVFNVYG 1221
Query: 65 IEVDPRHLSLVADYMT 80
I V+ RHLSL+ADYMT
Sbjct: 1222 ISVNHRHLSLIADYMT 1237
>gi|301118334|ref|XP_002906895.1| DNA-directed RNA polymerase I subunit RPA1, putative [Phytophthora
infestans T30-4]
gi|262108244|gb|EEY66296.1| DNA-directed RNA polymerase I subunit RPA1, putative [Phytophthora
infestans T30-4]
Length = 1811
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 53/75 (70%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
K ++T+G+N I + H+LD+N L NDI+ + TYG+EAA I +++ VF VYGI
Sbjct: 1665 KPCVQTEGLNFQEIWGFDHILDVNNLATNDIYQVLQTYGVEAARASISKQIMEVFGVYGI 1724
Query: 66 EVDPRHLSLVADYMT 80
VDPRHLSL+ADYMT
Sbjct: 1725 SVDPRHLSLLADYMT 1739
>gi|328771968|gb|EGF82007.1| hypothetical protein BATDEDRAFT_18926 [Batrachochytrium dendrobatidis
JAM81]
Length = 1709
Score = 85.1 bits (209), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 53/70 (75%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
TDG+N+ I +Y +++D+NK+ NDI + TYG+EAA I++E+ VF VYGI+VD R
Sbjct: 1564 TDGVNLKGIWEYDNVIDVNKIGTNDIAAILHTYGVEAARAAIMQEIAGVFGVYGIQVDSR 1623
Query: 71 HLSLVADYMT 80
HLS++ADYMT
Sbjct: 1624 HLSIIADYMT 1633
>gi|300121000|emb|CBK21382.2| unnamed protein product [Blastocystis hominis]
Length = 1671
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 52/73 (71%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 68
L+T+G+N + ++ L+D+NK+Y NDI + TYG+EAA I+ E+ VF VY I VD
Sbjct: 1511 LQTEGVNFPTVWAHQGLVDVNKIYSNDIWQILETYGVEAARTAIVTEITRVFDVYSISVD 1570
Query: 69 PRHLSLVADYMTH 81
PRHL+L+ADYMT
Sbjct: 1571 PRHLTLIADYMTQ 1583
>gi|302843962|ref|XP_002953522.1| hypothetical protein VOLCADRAFT_105949 [Volvox carteri f.
nagariensis]
gi|300261281|gb|EFJ45495.1| hypothetical protein VOLCADRAFT_105949 [Volvox carteri f.
nagariensis]
Length = 1891
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 39/83 (46%), Positives = 56/83 (67%), Gaps = 2/83 (2%)
Query: 1 METNGKHLLK--TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKN 58
+E GK K TDG+N + + D+N + ND++ M +T+G+EAA I+RE ++
Sbjct: 1738 VEGQGKEQAKVQTDGVNFEGAWIHSDIADVNAVTTNDVYAMLTTFGVEAARATIMREAQS 1797
Query: 59 VFAVYGIEVDPRHLSLVADYMTH 81
VF+ YGI VDPRHLSL+AD+MTH
Sbjct: 1798 VFSAYGIGVDPRHLSLIADFMTH 1820
>gi|71998295|ref|NP_001022450.1| Protein RPOA-1, isoform a [Caenorhabditis elegans]
gi|5596656|emb|CAB07687.2| Protein RPOA-1, isoform a [Caenorhabditis elegans]
Length = 1737
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 57/83 (68%), Gaps = 2/83 (2%)
Query: 2 ETNGKHL--LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNV 59
+ NGK + L+T G+N+ ++ +LD+N +Y ND++ + YG+EA ++ I E+ NV
Sbjct: 1564 QKNGKEMTILQTQGVNLAAFFKHADVLDVNSVYSNDLNLILENYGVEACSKAITTEMNNV 1623
Query: 60 FAVYGIEVDPRHLSLVADYMTHS 82
FAVYGIEV RHLSL ADYMT +
Sbjct: 1624 FAVYGIEVSKRHLSLTADYMTFT 1646
>gi|348688967|gb|EGZ28781.1| hypothetical protein PHYSODRAFT_322406 [Phytophthora sojae]
Length = 1813
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 53/75 (70%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
K ++T+G+N I + +LD+N L NDI+ + TYG+EAA I +++ +VF VYGI
Sbjct: 1667 KPCVQTEGLNFQEIWGFDDILDVNNLATNDIYQVLHTYGVEAARASISKQIMDVFGVYGI 1726
Query: 66 EVDPRHLSLVADYMT 80
VDPRHLSL+ADYMT
Sbjct: 1727 SVDPRHLSLLADYMT 1741
>gi|341884897|gb|EGT40832.1| hypothetical protein CAEBREN_30438 [Caenorhabditis brenneri]
Length = 1724
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 57/83 (68%), Gaps = 2/83 (2%)
Query: 2 ETNGKH--LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNV 59
+ NGK +L+T G+N+ ++ +LD+N +Y ND++ + YG+EA ++ I E+ NV
Sbjct: 1553 QKNGKETIILQTQGVNLAAFFKHADVLDVNSVYSNDLNLILENYGVEACSKAITTEMNNV 1612
Query: 60 FAVYGIEVDPRHLSLVADYMTHS 82
FAVYGIEV RHLSL ADYMT +
Sbjct: 1613 FAVYGIEVSKRHLSLTADYMTFT 1635
>gi|384492991|gb|EIE83482.1| hypothetical protein RO3G_08187 [Rhizopus delemar RA 99-880]
Length = 1612
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 57/79 (72%)
Query: 2 ETNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
E + L+T+G+N+ + + ++D+N + NDI + +TYG+EAA II+EV +VFA
Sbjct: 1460 ENDTSKRLQTEGVNLRGMWAFSDIIDVNYIDTNDIAAILNTYGVEAARNAIIKEVASVFA 1519
Query: 62 VYGIEVDPRHLSLVADYMT 80
VYGI+VD RHL+L+ADYMT
Sbjct: 1520 VYGIKVDRRHLTLIADYMT 1538
>gi|302799457|ref|XP_002981487.1| hypothetical protein SELMODRAFT_233747 [Selaginella moellendorffii]
gi|300150653|gb|EFJ17302.1| hypothetical protein SELMODRAFT_233747 [Selaginella moellendorffii]
Length = 1578
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 1 METNGKH---LLKTDGINV-NYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREV 56
+E NGK L+TDG+N S +LDLNKL NDI M +TYG+EAA I+REV
Sbjct: 1420 IELNGKPENPALQTDGVNFWELWSLPDDVLDLNKLTSNDIAAMLNTYGVEAARATIVREV 1479
Query: 57 KNVFAVYGIEVDPRHLSLVADYMT 80
+ VF YGI V+ RHLSL+AD+MT
Sbjct: 1480 QGVFGSYGISVNARHLSLIADFMT 1503
>gi|302760347|ref|XP_002963596.1| hypothetical protein SELMODRAFT_438401 [Selaginella moellendorffii]
gi|300168864|gb|EFJ35467.1| hypothetical protein SELMODRAFT_438401 [Selaginella moellendorffii]
Length = 1588
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 1 METNGKH---LLKTDGINV-NYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREV 56
+E NGK L+TDG+N S +LDLNKL NDI M +TYG+EAA I+REV
Sbjct: 1430 IELNGKPENPALQTDGVNFWELWSLPDDVLDLNKLTSNDIAAMLNTYGVEAARATIVREV 1489
Query: 57 KNVFAVYGIEVDPRHLSLVADYMT 80
+ VF YGI V+ RHLSL+AD+MT
Sbjct: 1490 QGVFGSYGISVNARHLSLIADFMT 1513
>gi|384501317|gb|EIE91808.1| hypothetical protein RO3G_16519 [Rhizopus delemar RA 99-880]
Length = 1668
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 57/79 (72%)
Query: 2 ETNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
E + L+T+G+N+ + + ++D+N + NDI + +TYG+EAA +I+EV +VFA
Sbjct: 1516 ENDTSKRLQTEGVNLRGMWAFSDIIDVNYIDTNDIAAILNTYGVEAARNAVIKEVGSVFA 1575
Query: 62 VYGIEVDPRHLSLVADYMT 80
VYGI+VD RHL+L+ADYMT
Sbjct: 1576 VYGIKVDRRHLTLIADYMT 1594
>gi|167522056|ref|XP_001745366.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776324|gb|EDQ89944.1| predicted protein [Monosiga brevicollis MX1]
Length = 1592
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 51/72 (70%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 68
L+ +G+N+ + Q+ LL+LN L ND++ M TYG+EA R IIRE+ VF VYGI V+
Sbjct: 1442 LQVEGLNIYELWQHAELLELNSLKCNDVNAMFETYGVEAGQRSIIRELSAVFDVYGIAVN 1501
Query: 69 PRHLSLVADYMT 80
RHLSLVADYM
Sbjct: 1502 HRHLSLVADYMA 1513
>gi|268532860|ref|XP_002631558.1| Hypothetical protein CBG20734 [Caenorhabditis briggsae]
Length = 1723
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 56/83 (67%), Gaps = 2/83 (2%)
Query: 2 ETNGKH--LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNV 59
+ NGK +L+T G+N+ ++ +LD+N +Y ND++ + YG+EA + I E+ NV
Sbjct: 1551 QKNGKETIILQTQGVNLAAFFKHADVLDVNSVYSNDLNLILENYGVEACAKAITTEMNNV 1610
Query: 60 FAVYGIEVDPRHLSLVADYMTHS 82
FAVYGIEV RHLSL ADYMT +
Sbjct: 1611 FAVYGIEVSKRHLSLTADYMTFT 1633
>gi|19113092|ref|NP_596300.1| DNA-directed RNA polymerase I complex large subunit Nuc1
[Schizosaccharomyces pombe 972h-]
gi|3334489|sp|P15398.2|RPA1_SCHPO RecName: Full=DNA-directed RNA polymerase I subunit rpa1; AltName:
Full=DNA-directed RNA polymerase I 190 kDa polypeptide;
AltName: Full=DNA-directed RNA polymerase I largest
subunit
gi|173433|gb|AAA35326.1| RNA polymerase I largest subunit [Schizosaccharomyces pombe]
gi|2832886|emb|CAA16827.1| DNA-directed RNA polymerase I complex large subunit Nuc1
[Schizosaccharomyces pombe]
Length = 1689
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 50/70 (71%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
T+G+N+ I ++ + + +N +Y NDI + YG+EAA I+ EV +VF VYGI VDPR
Sbjct: 1544 TEGVNLKAIWEFYNEISMNDIYTNDIAAILRIYGVEAARNAIVHEVSSVFGVYGIAVDPR 1603
Query: 71 HLSLVADYMT 80
HLSL+ADYMT
Sbjct: 1604 HLSLIADYMT 1613
>gi|325179800|emb|CCA14203.1| DNAdirected RNA polymerase I subunit RPA1 putative [Albugo laibachii
Nc14]
Length = 1800
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 53/75 (70%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
+ ++T+G+N I ++ +L +N+L NDI+ + T+G+EAA I +++ VF VYGI
Sbjct: 1652 RPCIQTEGLNFQQIWEFGDILSVNQLMTNDIYQVLKTFGVEAARASISKQINEVFGVYGI 1711
Query: 66 EVDPRHLSLVADYMT 80
VDPRHLSL+ADYMT
Sbjct: 1712 SVDPRHLSLLADYMT 1726
>gi|170590678|ref|XP_001900098.1| RNA polymerase Rpb1, domain 2 family protein [Brugia malayi]
gi|158592248|gb|EDP30848.1| RNA polymerase Rpb1, domain 2 family protein [Brugia malayi]
Length = 1687
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 53/76 (69%)
Query: 7 HLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIE 66
+L T GINV + ++ +LD+N LY ND++ M + YGIEA R +++E+ VF YGI+
Sbjct: 1534 QVLATQGINVQALMKHSDVLDVNTLYSNDLNMMCNNYGIEACGRALVKEIIRVFTPYGID 1593
Query: 67 VDPRHLSLVADYMTHS 82
V+ RHL+L ADYMT +
Sbjct: 1594 VNWRHLTLAADYMTFT 1609
>gi|312068462|ref|XP_003137225.1| hypothetical protein LOAG_01639 [Loa loa]
Length = 1707
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 53/76 (69%)
Query: 7 HLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIE 66
+L T GINV + ++ +LD+N LY ND++ + S YGIEA R +++E+ VF YGI+
Sbjct: 1554 QILATQGINVQALMKHSDVLDVNTLYSNDLNMICSNYGIEACGRALVKEIIRVFTPYGID 1613
Query: 67 VDPRHLSLVADYMTHS 82
++ RHL+L ADYMT +
Sbjct: 1614 INWRHLTLAADYMTFT 1629
>gi|393911384|gb|EFO26842.2| hypothetical protein LOAG_01639 [Loa loa]
Length = 1744
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 53/76 (69%)
Query: 7 HLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIE 66
+L T GINV + ++ +LD+N LY ND++ + S YGIEA R +++E+ VF YGI+
Sbjct: 1591 QILATQGINVQALMKHSDVLDVNTLYSNDLNMICSNYGIEACGRALVKEIIRVFTPYGID 1650
Query: 67 VDPRHLSLVADYMTHS 82
++ RHL+L ADYMT +
Sbjct: 1651 INWRHLTLAADYMTFT 1666
>gi|440795219|gb|ELR16355.1| RNA polymerase Rpb1 protein [Acanthamoeba castellanii str. Neff]
Length = 1699
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 55/75 (73%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
K+ ++T+G+N I+Q+ ++DL+ + NDI+ + +T+G+EAA R I E+ VF VYGI
Sbjct: 1536 KYAVQTEGVNFGIIAQFADVVDLSGVRSNDIYAVLTTFGVEAARRSIADEINGVFKVYGI 1595
Query: 66 EVDPRHLSLVADYMT 80
VD RHL+++ADYMT
Sbjct: 1596 GVDHRHLAIIADYMT 1610
>gi|167382961|ref|XP_001736348.1| DNA-directed RNA polymerase I subunit RPA1 [Entamoeba dispar SAW760]
gi|165901328|gb|EDR27412.1| DNA-directed RNA polymerase I subunit RPA1, putative [Entamoeba
dispar SAW760]
Length = 1568
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 54/71 (76%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
T+G+N + Q+ +L+D++ + ND++ + + YG+EAA V+I E+ +VF YGI+VDPR
Sbjct: 1426 TEGVNFRAVLQFGNLVDVDSVETNDVYAVLNMYGVEAARTVLIHEIDSVFKAYGIDVDPR 1485
Query: 71 HLSLVADYMTH 81
HL+LVADYMT+
Sbjct: 1486 HLNLVADYMTY 1496
>gi|213407078|ref|XP_002174310.1| DNA-directed RNA polymerase I subunit RPA1 [Schizosaccharomyces
japonicus yFS275]
gi|212002357|gb|EEB08017.1| DNA-directed RNA polymerase I subunit RPA1 [Schizosaccharomyces
japonicus yFS275]
Length = 1657
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 50/70 (71%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
T+G+N+ + ++ + +N LY NDI + YG+EAA I+RE+ +VF VYGI+VD R
Sbjct: 1514 TEGVNLRAVWEFYEEIHMNDLYTNDIAAVLRIYGVEAARNAIVREISSVFGVYGIDVDHR 1573
Query: 71 HLSLVADYMT 80
HLSL+ADYMT
Sbjct: 1574 HLSLIADYMT 1583
>gi|51090906|dbj|BAD35511.1| putative RNA polymerase A(I) large subunit [Oryza sativa Japonica
Group]
Length = 1748
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 49/72 (68%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 68
L+T G+N + LD+N++ NDIH M +TYG+EAA II EVK VF YGI VD
Sbjct: 1598 LQTAGVNFEVFHKLVDYLDINEVRSNDIHAMLNTYGVEAARATIIGEVKGVFGAYGIHVD 1657
Query: 69 PRHLSLVADYMT 80
RHL+L+AD+MT
Sbjct: 1658 MRHLNLIADFMT 1669
>gi|297606165|ref|NP_001058063.2| Os06g0612200 [Oryza sativa Japonica Group]
gi|255677221|dbj|BAF19977.2| Os06g0612200 [Oryza sativa Japonica Group]
Length = 237
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 49/72 (68%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 68
L+T G+N + LD+N++ NDIH M +TYG+EAA II EVK VF YGI VD
Sbjct: 87 LQTAGVNFEVFHKLVDYLDINEVRSNDIHAMLNTYGVEAARATIIGEVKGVFGAYGIHVD 146
Query: 69 PRHLSLVADYMT 80
RHL+L+AD+MT
Sbjct: 147 MRHLNLIADFMT 158
>gi|4995|emb|CAA32887.1| unnamed protein product [Schizosaccharomyces pombe]
Length = 1689
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 49/70 (70%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
T+G+N+ I ++ + + +N +Y NDI + YG+EA I+ EV +VF VYGI VDPR
Sbjct: 1544 TEGVNLKAIWEFYNEISMNDIYTNDIAAILRIYGVEATRNAIVHEVSSVFGVYGIAVDPR 1603
Query: 71 HLSLVADYMT 80
HLSL+ADYMT
Sbjct: 1604 HLSLIADYMT 1613
>gi|255087754|ref|XP_002505800.1| predicted protein [Micromonas sp. RCC299]
gi|226521070|gb|ACO67058.1| predicted protein [Micromonas sp. RCC299]
Length = 1616
Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 35/71 (49%), Positives = 50/71 (70%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 68
++TDG+N L+D KL ND++ M TYG+EAA + +++EV+NVF VYGI VD
Sbjct: 1479 IQTDGVNFAAAWANDDLVDCTKLTTNDVYAMLQTYGVEAARQTLVQEVRNVFGVYGIGVD 1538
Query: 69 PRHLSLVADYM 79
RHL+L+AD+M
Sbjct: 1539 ARHLTLIADFM 1549
>gi|224087064|ref|XP_002308050.1| predicted protein [Populus trichocarpa]
gi|222854026|gb|EEE91573.1| predicted protein [Populus trichocarpa]
Length = 464
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 50/74 (67%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 68
L T G++ N + + LD+ +Y N IH M YG+EAA IIRE+K+VF YGI V+
Sbjct: 320 LHTIGVDFNTFWKMQDHLDVRYMYSNSIHGMLKAYGVEAARETIIREIKHVFNSYGISVN 379
Query: 69 PRHLSLVADYMTHS 82
RHLSL+ADYMTH+
Sbjct: 380 TRHLSLIADYMTHT 393
>gi|332239236|ref|XP_003268812.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
RPA1 [Nomascus leucogenys]
Length = 1723
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 54/76 (71%), Gaps = 3/76 (3%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG--- 64
+L T+GIN+ + +Y +LDL +LY NDIH MA+TYGIEAA RVI +E+K+VFAVYG
Sbjct: 1577 VLNTEGINLPELFKYAEVLDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGKRS 1636
Query: 65 IEVDPRHLSLVADYMT 80
+++ P+ L D M
Sbjct: 1637 LQITPQGLGASQDXMC 1652
>gi|218198539|gb|EEC80966.1| hypothetical protein OsI_23688 [Oryza sativa Indica Group]
Length = 1350
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 48/73 (65%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+K G+N + LD+N++ NDIH M +TYG+EAA II EVK VF YGI V
Sbjct: 1199 FVKASGVNFEVFHKLVDYLDINEVRSNDIHAMLNTYGVEAARATIIGEVKGVFGAYGIHV 1258
Query: 68 DPRHLSLVADYMT 80
D RHL+L+AD+MT
Sbjct: 1259 DMRHLNLIADFMT 1271
>gi|316997017|dbj|BAJ52636.1| RNA polymerase I largest subunit [Monosiga ovata]
Length = 1041
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 52/75 (69%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
+ L+ +GIN+ + ++ LLD+NK+ NDI + YGIEAA +IRE+ VF VYGI
Sbjct: 893 RDTLQVEGINIPELWRHAGLLDINKIRSNDIWAINGVYGIEAARATMIREINEVFKVYGI 952
Query: 66 EVDPRHLSLVADYMT 80
VD RHLSL++D+MT
Sbjct: 953 SVDHRHLSLISDFMT 967
>gi|422294084|gb|EKU21384.1| DNA-directed RNA polymerase I subunit RPA1 [Nannochloropsis gaditana
CCMP526]
Length = 1873
Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 38/79 (48%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Query: 4 NGKHLLKTDGINVNYISQY-RHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 62
+G+ ++T+G N++ + + LDLN + NDI M TYG+EAA I++E+K VF
Sbjct: 1700 DGRCSIQTEGCNLSELWEVGDAALDLNNITSNDIWAMHQTYGVEAARATIVKEIKGVFGA 1759
Query: 63 YGIEVDPRHLSLVADYMTH 81
YGI VDPRHL LVAD+MT+
Sbjct: 1760 YGIAVDPRHLGLVADFMTY 1778
>gi|222635877|gb|EEE66009.1| hypothetical protein OsJ_21960 [Oryza sativa Japonica Group]
Length = 209
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 48/73 (65%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+K G+N + LD+N++ NDIH M +TYG+EAA II EVK VF YGI V
Sbjct: 58 FVKASGVNFEVFHKLVDYLDINEVRSNDIHAMLNTYGVEAARATIIGEVKGVFGAYGIHV 117
Query: 68 DPRHLSLVADYMT 80
D RHL+L+AD+MT
Sbjct: 118 DMRHLNLIADFMT 130
>gi|183232815|ref|XP_649386.2| DNA-directed RNA polymerase I largest subunit [Entamoeba histolytica
HM-1:IMSS]
gi|169801864|gb|EAL43998.2| DNA-directed RNA polymerase I largest subunit, putative [Entamoeba
histolytica HM-1:IMSS]
Length = 1570
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 53/71 (74%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
T+G+N Q+ +L+D++ + ND++ + + YG+EAA V+I E+ +VF YGI+VDPR
Sbjct: 1428 TEGVNFRAALQFGNLVDVDTVETNDVYAVLNMYGVEAARTVLIHEIDSVFKAYGIDVDPR 1487
Query: 71 HLSLVADYMTH 81
HL+LVADYMT+
Sbjct: 1488 HLNLVADYMTY 1498
>gi|326426598|gb|EGD72168.1| Crp22 [Salpingoeca sp. ATCC 50818]
Length = 1617
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 53/79 (67%)
Query: 2 ETNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
E + + +G+N+ + ++ +LDLN L ND++ M YGIEAA IIRE++ VF
Sbjct: 1467 EQDTPDVFMVEGLNMRVVREHADILDLNHLECNDVYAMLEAYGIEAARDSIIRELRAVFN 1526
Query: 62 VYGIEVDPRHLSLVADYMT 80
VYGI V+ RHLSL+ADYM+
Sbjct: 1527 VYGITVNHRHLSLIADYMS 1545
>gi|156086950|ref|XP_001610882.1| DNA directed RNA polymerase [Babesia bovis T2Bo]
gi|154798135|gb|EDO07314.1| DNA directed RNA polymerase [Babesia bovis]
Length = 2016
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 73/125 (58%), Gaps = 7/125 (5%)
Query: 2 ETNGK-HLLKTDGINVNYISQYRH-LLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNV 59
+ NG+ + L DG N+ + R L+D N+L+VNDI + YGIEAA I+ E++NV
Sbjct: 1830 DNNGEVYKLHCDGTNLQRLFLLRDGLVDFNRLHVNDIATVYRYYGIEAARASIVSELQNV 1889
Query: 60 FAVYGIEVDPRHLSLVADYMTHS----EFDLIIMVS-KSWMLDEVKSTTARSVTPACEPN 114
F+VYGI VD RHLSL+AD+MT+ F+ M S +L +T + + ACE
Sbjct: 1890 FSVYGINVDYRHLSLIADFMTNKGDIRTFNRYGMARHASPLLQMSFESTLKFIMDACERG 1949
Query: 115 SHHDV 119
+ D+
Sbjct: 1950 GYDDL 1954
>gi|402594773|gb|EJW88699.1| hypothetical protein WUBG_00385 [Wuchereria bancrofti]
Length = 302
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 52/76 (68%)
Query: 7 HLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIE 66
+L T GINV + ++ +LD+N LY ND++ + + YGIEA R +++E+ VF YGI
Sbjct: 149 QVLATQGINVQALMKHSDVLDVNTLYSNDLNMICNNYGIEACGRALVKEIIRVFTPYGIG 208
Query: 67 VDPRHLSLVADYMTHS 82
V+ RHL+L ADYMT +
Sbjct: 209 VNWRHLTLAADYMTFT 224
>gi|356537377|ref|XP_003537204.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Glycine
max]
Length = 1653
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 51/74 (68%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 68
L+T G++ + LD+ +Y N++H M + YG+EAA IIREV+NVF YGI V+
Sbjct: 1509 LQTSGVHFKTFWELEDDLDVRYIYSNNVHAMLNAYGVEAARETIIREVQNVFKSYGISVN 1568
Query: 69 PRHLSLVADYMTHS 82
RHL+L+AD+MTH+
Sbjct: 1569 IRHLTLIADFMTHT 1582
>gi|76154357|gb|AAX25843.2| SJCHGC05045 protein [Schistosoma japonicum]
Length = 367
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 48/73 (65%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+ + +G+N+ + +Y + DLN LY N+I M TYGIEAA + REV VF YGI V
Sbjct: 275 MFRVEGVNMIEMMRYPEVFDLNHLYTNNITVMNETYGIEAARAALQREVSGVFGHYGIHV 334
Query: 68 DPRHLSLVADYMT 80
D RHLSL+ DY+T
Sbjct: 335 DSRHLSLIGDYLT 347
>gi|219114393|ref|XP_002176367.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217402613|gb|EEC42603.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 1674
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 57/101 (56%), Gaps = 4/101 (3%)
Query: 2 ETNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
E L+T G+N + + +D NKL NDI + YG+EAA I+++++ VF
Sbjct: 1528 EEGRGRCLQTAGVNFEEMYKL-ECVDHNKLLSNDIWAIRCAYGVEAARSSIVQQIRGVFG 1586
Query: 62 VYGIEVDPRHLSLVADYMTHSEFDLIIMVSKSWMLDEVKST 102
YGIEVDPRHLSL+ADYMT FD ++E ST
Sbjct: 1587 AYGIEVDPRHLSLIADYMT---FDGGYKAMNRIGMEETSST 1624
>gi|225441748|ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Vitis
vinifera]
Length = 1740
Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 53/74 (71%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 68
L+T G++ + + LD+ +Y N++H M +T+G+EAA II+EV NVF YG++V+
Sbjct: 1596 LQTAGVDFTAFWKMQDELDVRYVYSNNVHAMLNTFGVEAARATIIKEVFNVFNAYGVKVN 1655
Query: 69 PRHLSLVADYMTHS 82
RHLSL+AD+MTHS
Sbjct: 1656 IRHLSLIADFMTHS 1669
>gi|297739697|emb|CBI29879.3| unnamed protein product [Vitis vinifera]
Length = 1669
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 53/74 (71%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 68
L+T G++ + + LD+ +Y N++H M +T+G+EAA II+EV NVF YG++V+
Sbjct: 1525 LQTAGVDFTAFWKMQDELDVRYVYSNNVHAMLNTFGVEAARATIIKEVFNVFNAYGVKVN 1584
Query: 69 PRHLSLVADYMTHS 82
RHLSL+AD+MTHS
Sbjct: 1585 IRHLSLIADFMTHS 1598
>gi|388581035|gb|EIM21346.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Wallemia sebi CBS 633.66]
Length = 1746
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
Query: 9 LKTDGINVNYISQY-RHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
++T+G N+ I + + +DLN+LY NDI + TYG+EAA II EV +F VYGI V
Sbjct: 1603 IQTEGANLMGIRSFGQDFIDLNQLYSNDIDAIRRTYGVEAARASIINEVAGIFQVYGIGV 1662
Query: 68 DPRHLSLVADYMTH 81
D RHL+L+ADYMT+
Sbjct: 1663 DFRHLALLADYMTY 1676
>gi|392580430|gb|EIW73557.1| hypothetical protein TREMEDRAFT_26611 [Tremella mesenterica DSM 1558]
Length = 1691
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 45/59 (76%)
Query: 24 HLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHS 82
L+DL+KL NDI+ + TYG+EAA R II EV +VF YGI VD RH+S++ADYMTH+
Sbjct: 1564 ELIDLDKLGSNDIYALLQTYGVEAARRAIIDEVSSVFGAYGITVDYRHISVIADYMTHA 1622
>gi|336271863|ref|XP_003350689.1| hypothetical protein SMAC_02360 [Sordaria macrospora k-hell]
gi|380094851|emb|CCC07353.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1701
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 51/79 (64%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
N + ++ T+G N+ + QY ++ NK+ NDI M YG+EAA I+RE+ VF +
Sbjct: 1546 NNERMVHTEGSNIKAMQQYADYINPNKIMTNDIAQMLEIYGVEAARNSIVRELSGVFKGH 1605
Query: 64 GIEVDPRHLSLVADYMTHS 82
GI VDPRHL+L+ D+MT +
Sbjct: 1606 GIGVDPRHLNLIGDFMTRN 1624
>gi|328871266|gb|EGG19637.1| RNA polymerase I [Dictyostelium fasciculatum]
Length = 1662
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 51/73 (69%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 68
++T+GIN+ + + + L LN++Y NDI + + YG+EA I+ E+ NVF YGI VD
Sbjct: 1520 IQTEGINLIELFEMQDHLQLNRMYTNDIGSILNRYGVEACKSAIVSEISNVFGAYGITVD 1579
Query: 69 PRHLSLVADYMTH 81
RHL+L+ADYMT+
Sbjct: 1580 KRHLTLLADYMTY 1592
>gi|396499355|ref|XP_003845454.1| similar to DNA-directed RNA polymerase I subunit [Leptosphaeria
maculans JN3]
gi|312222035|emb|CBY01975.1| similar to DNA-directed RNA polymerase I subunit [Leptosphaeria
maculans JN3]
Length = 1707
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 51/73 (69%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
++ TDG N+ + +Y H++D+N+++ NDI M YG+EA I+RE+ VFA +GI V
Sbjct: 1527 VINTDGSNLLAMREYYHIIDVNRIFTNDIVAMLQLYGVEACRATIVREMHGVFAGHGISV 1586
Query: 68 DPRHLSLVADYMT 80
D RHL+L+AD MT
Sbjct: 1587 DQRHLNLIADTMT 1599
>gi|255571576|ref|XP_002526734.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
communis]
gi|223533923|gb|EEF35648.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
communis]
Length = 1686
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 49/74 (66%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 68
L G++ N + + LD+ +Y N+IH M TYG+EAA IIRE+ +VF YGI V
Sbjct: 1542 LHATGVDFNTFWKMQDHLDVRYIYSNNIHAMLKTYGVEAARETIIREINHVFKSYGIAVS 1601
Query: 69 PRHLSLVADYMTHS 82
RHLSL+AD+MTH+
Sbjct: 1602 NRHLSLIADFMTHT 1615
>gi|452840368|gb|EME42306.1| hypothetical protein DOTSEDRAFT_175298 [Dothistroma septosporum
NZE10]
Length = 1715
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 52/80 (65%)
Query: 2 ETNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
E +GK +L G N+ + Y+H++ + +Y N IH + YG+EAA I++EV +VF
Sbjct: 1551 EADGKPILAASGTNIKAMWDYQHIVHPHHIYTNSIHEILIHYGVEAARNAIVKEVSSVFG 1610
Query: 62 VYGIEVDPRHLSLVADYMTH 81
+GI VD RHL+L+ADYMT
Sbjct: 1611 GHGISVDTRHLTLIADYMTR 1630
>gi|164428077|ref|XP_956006.2| hypothetical protein NCU01638 [Neurospora crassa OR74A]
gi|18307453|emb|CAD21513.1| probable DNA-directed RNA polymerase I [Neurospora crassa]
gi|157072001|gb|EAA26770.2| hypothetical protein NCU01638 [Neurospora crassa OR74A]
Length = 1701
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 51/79 (64%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
N + L+ T+G N+ + QY ++ NK+ NDI + YG+EAA I+RE+ VF +
Sbjct: 1546 NKERLVHTEGSNIKAMQQYADYINPNKIMTNDIAQVLEIYGVEAARNSIVRELSGVFKGH 1605
Query: 64 GIEVDPRHLSLVADYMTHS 82
GI VDPRHL+L+ DYMT +
Sbjct: 1606 GIGVDPRHLNLIGDYMTRN 1624
>gi|336468277|gb|EGO56440.1| hypothetical protein NEUTE1DRAFT_122981 [Neurospora tetrasperma FGSC
2508]
gi|350289470|gb|EGZ70695.1| putative DNA-directed RNA polymerase I [Neurospora tetrasperma FGSC
2509]
Length = 1701
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 51/79 (64%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
N + L+ T+G N+ + QY ++ NK+ NDI + YG+EAA I+RE+ VF +
Sbjct: 1546 NKERLVHTEGSNIKAMQQYADYINPNKIMTNDIAQVLEIYGVEAARNSIVRELSGVFKGH 1605
Query: 64 GIEVDPRHLSLVADYMTHS 82
GI VDPRHL+L+ DYMT +
Sbjct: 1606 GIGVDPRHLNLIGDYMTRN 1624
>gi|397566986|gb|EJK45326.1| hypothetical protein THAOC_36058 [Thalassiosira oceanica]
Length = 1952
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 2 ETNGKHLLKTDGINVNYI-SQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 60
E L+T G N + S R ++D N+L N I + YG+EAA R I ++K VF
Sbjct: 1800 EEGRGRCLQTAGCNFEEVWSLPRDVVDHNQLVSNHIWGICCAYGVEAARRSIADQIKGVF 1859
Query: 61 AVYGIEVDPRHLSLVADYMTH 81
AVYGI VDPRHLSL+AD+MT+
Sbjct: 1860 AVYGISVDPRHLSLIADFMTY 1880
>gi|357475409|ref|XP_003607990.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
gi|355509045|gb|AES90187.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
Length = 1628
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 49/74 (66%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 68
L+T GI+ + L + +Y ND+H + YG+EAA VIIREV+NVF YGI V+
Sbjct: 1485 LQTSGIHFKTFWEMEDDLKVRYVYSNDVHAILKAYGVEAAKEVIIREVQNVFKSYGISVN 1544
Query: 69 PRHLSLVADYMTHS 82
RHL L+AD+MTHS
Sbjct: 1545 IRHLMLIADFMTHS 1558
>gi|431899744|gb|ELK07695.1| DNA-directed RNA polymerase I subunit RPA1 [Pteropus alecto]
Length = 1706
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/57 (63%), Positives = 46/57 (80%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
+L T+GIN+ + +Y +LDL +LY NDIH MASTYGIEAA RVI +E+K+VFAVYG
Sbjct: 1618 ILNTEGINLPELFKYAEVLDLRRLYSNDIHAMASTYGIEAALRVIEKEIKDVFAVYG 1674
>gi|449708432|gb|EMD47895.1| DNA-directed RNA polymerase I subunit RPA1, putative [Entamoeba
histolytica KU27]
Length = 1570
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 52/71 (73%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
T+G+N Q+ +L+D++ + ND++ + + YG+EAA V+I E+ +VF YGI+VDPR
Sbjct: 1428 TEGVNFRAALQFGNLVDVDTVETNDVYAVLNMYGVEAARTVLIHEIDSVFKAYGIDVDPR 1487
Query: 71 HLSLVADYMTH 81
HL+LVADYM +
Sbjct: 1488 HLNLVADYMMY 1498
>gi|406608115|emb|CCH40549.1| DNA-directed RNA polymerase I subunit A1 [Wickerhamomyces ciferrii]
Length = 1632
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 47/78 (60%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
NGK +L T+G+N N + Y +D+N + NDI + TYG+EAA I+ E+ NVF Y
Sbjct: 1482 NGKRVLTTEGVNFNAMWDYDDFIDVNGITSNDIAAVLHTYGVEAARNTIVNEISNVFGRY 1541
Query: 64 GIEVDPRHLSLVADYMTH 81
I V RHL L+ D MT
Sbjct: 1542 AISVSSRHLDLIGDMMTR 1559
>gi|360042899|emb|CCD78309.1| putative dna-directed rna polymerase I largest subunit [Schistosoma
mansoni]
Length = 1775
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 50/73 (68%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+ + +GIN+ + +Y + DL++LY N+I M TYGIEAA + REV VF YGI V
Sbjct: 1630 MFRVEGINMIEMMRYPQVFDLSQLYTNNITVMNETYGIEAARAALQREVSGVFGHYGIHV 1689
Query: 68 DPRHLSLVADYMT 80
+ RHLSL++DY+T
Sbjct: 1690 NSRHLSLISDYLT 1702
>gi|330927073|ref|XP_003301728.1| hypothetical protein PTT_13304 [Pyrenophora teres f. teres 0-1]
gi|311323320|gb|EFQ90175.1| hypothetical protein PTT_13304 [Pyrenophora teres f. teres 0-1]
Length = 1797
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 52/75 (69%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
++++ TDG N+ + +Y H++D+N+ NDI M YG+EA I+RE+ NVF+ +GI
Sbjct: 1559 ENIINTDGSNLIAMREYGHIIDVNRTLTNDIAAMLRIYGVEAGRATIVREMHNVFSGHGI 1618
Query: 66 EVDPRHLSLVADYMT 80
VD RHL+L+AD MT
Sbjct: 1619 NVDHRHLNLIADTMT 1633
>gi|367055126|ref|XP_003657941.1| hypothetical protein THITE_2124200 [Thielavia terrestris NRRL 8126]
gi|347005207|gb|AEO71605.1| hypothetical protein THITE_2124200 [Thielavia terrestris NRRL 8126]
Length = 1722
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 50/74 (67%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
L+ T+G N+ + QY ++ N++ NDI + YG+EA I+RE++ VF+ +GI V
Sbjct: 1571 LVHTEGANLRAMQQYGDYINPNRISTNDIAQVLEVYGVEACRNNIVRELRGVFSSHGIAV 1630
Query: 68 DPRHLSLVADYMTH 81
DPRHL+L+ADYMT
Sbjct: 1631 DPRHLNLIADYMTR 1644
>gi|281201615|gb|EFA75824.1| RNA polymerase I [Polysphondylium pallidum PN500]
Length = 1674
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 52/72 (72%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 68
++T+G+N ++ + + +NK+Y N+I+++ +TYG+EA I+ E+ +VF YGI VD
Sbjct: 1532 IQTEGVNFEELALIQDKIQINKIYTNNIYHVLNTYGVEACKSAIVSEITSVFGAYGITVD 1591
Query: 69 PRHLSLVADYMT 80
RHL+L+ADYMT
Sbjct: 1592 KRHLTLLADYMT 1603
>gi|321257682|ref|XP_003193673.1| DNA-directed RNA polymerase I 190 kDa polypeptide [Cryptococcus
gattii WM276]
gi|317460143|gb|ADV21886.1| DNA-directed RNA polymerase I 190 kDa polypeptide, putative
[Cryptococcus gattii WM276]
Length = 1726
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 54/75 (72%), Gaps = 1/75 (1%)
Query: 9 LKTDGINVNYI-SQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
L T+G N+ + + L+DL++L NDI+ + +T+G+EAA R II EV +VF YGI V
Sbjct: 1582 LITEGSNLRGMWALADELVDLDRLSSNDIYAILTTFGVEAARRAIIDEVSSVFGAYGIAV 1641
Query: 68 DPRHLSLVADYMTHS 82
D RHL+++ADYMTH+
Sbjct: 1642 DYRHLTIIADYMTHA 1656
>gi|405120183|gb|AFR94954.1| RNA polymerase I largest subunit [Cryptococcus neoformans var. grubii
H99]
Length = 1727
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 54/75 (72%), Gaps = 1/75 (1%)
Query: 9 LKTDGINVNYI-SQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
L T+G N+ + + L+DL++L NDI+ + +T+G+EAA R II EV +VF YGI V
Sbjct: 1583 LITEGSNLRGMWALADELVDLDRLSSNDIYAILTTFGVEAARRAIIDEVSSVFGAYGIAV 1642
Query: 68 DPRHLSLVADYMTHS 82
D RHL+++ADYMTH+
Sbjct: 1643 DYRHLTIIADYMTHA 1657
>gi|258563376|ref|XP_002582433.1| hypothetical protein UREG_07206 [Uncinocarpus reesii 1704]
gi|237907940|gb|EEP82341.1| hypothetical protein UREG_07206 [Uncinocarpus reesii 1704]
Length = 1666
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
Query: 7 HLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIE 66
H+L TDG+N+ + Y+H+++L+ LY N IH+M + YG+EAA I+RE+ +VF + I
Sbjct: 1522 HVL-TDGVNLLAMRDYQHIINLHTLYSNSIHHMLTFYGVEAARASIVREMDSVFKSHSIA 1580
Query: 67 VDPRHLSLVADYMTHS 82
VD RHL+L+ D MT S
Sbjct: 1581 VDNRHLNLIGDVMTQS 1596
>gi|316996999|dbj|BAJ52627.1| RNA polymerase I largest subunit [Stephanoeca diplocostata]
Length = 1031
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 52/73 (71%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+ +G N+ + + ++++N + NDIH + TYG+EAA I+R+V VF VYGI++
Sbjct: 884 MLQIEGQNLQELWNHPDIINVNSVSTNDIHAILRTYGVEAARATIVRQVVEVFDVYGIKI 943
Query: 68 DPRHLSLVADYMT 80
DPRH++LVAD MT
Sbjct: 944 DPRHMALVADTMT 956
>gi|320038801|gb|EFW20736.1| DNA-directed RNA polymerase 1 subunit RPA1 [Coccidioides posadasii
str. Silveira]
Length = 1690
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
Query: 7 HLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIE 66
H+L TDG+N+ + Y+H+++++ LY N IH+M + YG+EAA I+RE+ +VF + I
Sbjct: 1546 HIL-TDGVNLLAMRDYQHIINMHTLYSNSIHHMLTLYGVEAARASIVREMDSVFKSHSIA 1604
Query: 67 VDPRHLSLVADYMTHS 82
VD RHL+L+ D MT S
Sbjct: 1605 VDNRHLNLIGDVMTQS 1620
>gi|225217014|gb|ACN85301.1| putative RNA polymerase A(I) large subunit [Oryza coarctata]
Length = 1830
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 47/73 (64%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
L+T G+N LD+N++ NDIH M YG+EAA II+EV VF+ YGI V
Sbjct: 1679 FLQTAGVNFEVFWNLVDYLDINEIRSNDIHAMLKIYGVEAARATIIQEVSGVFSAYGINV 1738
Query: 68 DPRHLSLVADYMT 80
D RHL+++AD+MT
Sbjct: 1739 DMRHLNMIADFMT 1751
>gi|430813364|emb|CCJ29287.1| unnamed protein product [Pneumocystis jirovecii]
Length = 1074
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 49/74 (66%)
Query: 7 HLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIE 66
+L TDG+N I + + ++ LN LY NDI + TYG+EAA VII E+ +F YGI
Sbjct: 930 RVLCTDGVNFKGIWEAQDIVSLNTLYSNDITSVLRTYGVEAARNVIITEISKLFKAYGIV 989
Query: 67 VDPRHLSLVADYMT 80
VD RHL L++DYMT
Sbjct: 990 VDVRHLILISDYMT 1003
>gi|303317604|ref|XP_003068804.1| DNA-directed RNA polymerase II largest subunit, putative
[Coccidioides posadasii C735 delta SOWgp]
gi|240108485|gb|EER26659.1| DNA-directed RNA polymerase II largest subunit, putative
[Coccidioides posadasii C735 delta SOWgp]
Length = 1690
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
Query: 7 HLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIE 66
H+L TDG+N+ + Y+H+++++ LY N IH+M + YG+EAA I+RE+ +VF + I
Sbjct: 1546 HIL-TDGVNLLAMRDYQHIINMHTLYSNSIHHMLTLYGVEAARASIVREMDSVFKSHSIA 1604
Query: 67 VDPRHLSLVADYMTHS 82
VD RHL+L+ D MT S
Sbjct: 1605 VDNRHLNLIGDVMTQS 1620
>gi|414866668|tpg|DAA45225.1| TPA: putative DNA-directed RNA polymerase family protein [Zea mays]
Length = 382
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 46/72 (63%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 68
L+T G+N + + +N + NDIH M TYG+EAA II+EV VF YGI VD
Sbjct: 232 LETAGVNFEVVWNLSEYISVNDITSNDIHAMLKTYGVEAARGTIIKEVSGVFEPYGINVD 291
Query: 69 PRHLSLVADYMT 80
RHLSL+AD+MT
Sbjct: 292 MRHLSLIADFMT 303
>gi|330844422|ref|XP_003294125.1| RNA polymerase I, largest subunit [Dictyostelium purpureum]
gi|325075464|gb|EGC29348.1| RNA polymerase I, largest subunit [Dictyostelium purpureum]
Length = 1598
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 47/72 (65%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 68
++++G+N+N I R L +N+ Y NDI+ + YG+EA + I E+ NVF YGI VD
Sbjct: 1456 IQSEGVNLNEIFNLRDKLKINEFYTNDIYSVLHKYGVEACRQAITSEISNVFGAYGISVD 1515
Query: 69 PRHLSLVADYMT 80
RHL L+ DYMT
Sbjct: 1516 KRHLILLGDYMT 1527
>gi|358057625|dbj|GAA96623.1| hypothetical protein E5Q_03293 [Mixia osmundae IAM 14324]
Length = 1866
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/71 (53%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Query: 11 TDGINVNYISQYRH-LLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDP 69
TDG N+ + + + +LN+LY NDI + TYG+EAA II+EV VF VYGI VD
Sbjct: 1719 TDGANLPATWDFAYGVCNLNELYSNDIGAILLTYGVEAARTAIIKEVSGVFGVYGIGVDY 1778
Query: 70 RHLSLVADYMT 80
RHL+L+ADYMT
Sbjct: 1779 RHLTLIADYMT 1789
>gi|123407477|ref|XP_001303016.1| DNA-directed RNA polymerase I 190 kDa polypeptide-related protein
[Trichomonas vaginalis G3]
gi|121884359|gb|EAX90086.1| DNA-directed RNA polymerase I 190 kDa polypeptide-related protein
[Trichomonas vaginalis G3]
Length = 370
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 55/79 (69%), Gaps = 1/79 (1%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
+G+ ++ T+G N IS+ R +D+NK Y NDI + YGIEAA II+EV +VF Y
Sbjct: 224 SGRPIIVTEGANYGEISK-RLEIDMNKFYTNDIAIILKHYGIEAARMAIIKEVNSVFKNY 282
Query: 64 GIEVDPRHLSLVADYMTHS 82
I+VD RHLSL+AD++T+S
Sbjct: 283 MIDVDMRHLSLIADFVTNS 301
>gi|357114820|ref|XP_003559192.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like
[Brachypodium distachyon]
Length = 1868
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 49/72 (68%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 68
LKT G+N + + LD+ K+ NDIH + TYG+EAA II+EVK VF +GI V+
Sbjct: 1718 LKTAGVNFDVFWGLQDYLDICKVASNDIHAILRTYGVEAARATIIKEVKAVFEPFGINVN 1777
Query: 69 PRHLSLVADYMT 80
RHLSLVA++MT
Sbjct: 1778 RRHLSLVAEFMT 1789
>gi|119186661|ref|XP_001243937.1| hypothetical protein CIMG_03378 [Coccidioides immitis RS]
gi|392870658|gb|EAS32476.2| DNA-directed RNA polymerase I subunit [Coccidioides immitis RS]
Length = 1690
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
Query: 7 HLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIE 66
H+L TDG+N+ + Y+H+++++ LY N IH+M + YG+EAA I+RE+ +VF + I
Sbjct: 1546 HVL-TDGVNLLAMRDYQHIINMHTLYSNSIHHMLTLYGVEAARASIVREMDSVFKSHSIA 1604
Query: 67 VDPRHLSLVADYMTHS 82
VD RHL+L+ D MT S
Sbjct: 1605 VDNRHLNLIGDVMTQS 1620
>gi|58266720|ref|XP_570516.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21]
gi|134110900|ref|XP_775914.1| hypothetical protein CNBD3210 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258580|gb|EAL21267.1| hypothetical protein CNBD3210 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226749|gb|AAW43209.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 1727
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
Query: 9 LKTDGINVNYI-SQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
L T+G N+ + + L+DL++L NDI+ + T+G+EAA R II EV +VF YGI V
Sbjct: 1583 LITEGSNLRGMWALADELVDLDRLSSNDIYAILQTFGVEAARRAIIDEVSSVFGAYGIAV 1642
Query: 68 DPRHLSLVADYMTHS 82
D RHL+++ADYMTH+
Sbjct: 1643 DYRHLTIIADYMTHA 1657
>gi|401887041|gb|EJT51047.1| DNA-directed RNA polymerase I polypeptide [Trichosporon asahii var.
asahii CBS 2479]
gi|406695190|gb|EKC98502.1| DNA-directed RNA polymerase I polypeptide [Trichosporon asahii var.
asahii CBS 8904]
Length = 669
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 68/115 (59%), Gaps = 7/115 (6%)
Query: 9 LKTDGINVNYISQYR-HLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+ T+G N+ + + L+DL+KL ND++ + TYG+EAA R II E+ ++F YGI V
Sbjct: 523 MTTEGSNLKGMWELADELIDLDKLGSNDVYAILRTYGVEAARRSIINEMSSIFGAYGIGV 582
Query: 68 DPRHLSLVADYMTH----SEFDLIIMVSKSWMLDEVKSTTARSVTPACEPNSHHD 118
D RHL+++ADYMTH F+ + SKS L +K++ +V E H D
Sbjct: 583 DYRHLTVIADYMTHHGGYRPFNRTGIASKSSPL--LKASFETTVAFLSEATLHGD 635
>gi|432102463|gb|ELK30040.1| DNA-directed RNA polymerase I subunit RPA1 [Myotis davidii]
Length = 1657
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/57 (61%), Positives = 46/57 (80%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
+L T+GIN+ + +Y +LDL +LY NDIH MA+TYGIEAA RVI +E+K+VFAVYG
Sbjct: 1569 VLNTEGINLPELFKYAEVLDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYG 1625
>gi|66819721|ref|XP_643519.1| RNA polymerase I, largest subunit [Dictyostelium discoideum AX4]
gi|74860727|sp|Q86H36.1|RPA1_DICDI RecName: Full=DNA-directed RNA polymerase I subunit rpa1; Short=RNA
polymerase I subunit A1; AltName: Full=DNA-directed RNA
polymerase I largest subunit; AltName: Full=DNA-directed
RNA polymerase I subunit A
gi|60471674|gb|EAL69630.1| RNA polymerase I, largest subunit [Dictyostelium discoideum AX4]
Length = 1615
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 50/72 (69%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 68
++++G+N++ I + R L ++++Y NDI+ + YG+EA + + E+ NVFA YGI VD
Sbjct: 1473 IQSEGVNLSEIFELRDKLKIDEIYTNDIYAILQKYGVEACRQAVTSEISNVFAAYGISVD 1532
Query: 69 PRHLSLVADYMT 80
RHL L+ DYMT
Sbjct: 1533 KRHLILLGDYMT 1544
>gi|409049783|gb|EKM59260.1| hypothetical protein PHACADRAFT_169748 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1712
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 55/86 (63%), Gaps = 7/86 (8%)
Query: 2 ETNGKHLLK--TDGINVNYISQY-----RHLLDLNKLYVNDIHYMASTYGIEAANRVIIR 54
E NG+ K T+G N++ I Q+ L+D N + NDI+ + +TYG+EAA I+R
Sbjct: 1554 EENGETTYKMTTNGSNISGIWQFACGDEESLIDENSIESNDIYAILATYGVEAARAAILR 1613
Query: 55 EVKNVFAVYGIEVDPRHLSLVADYMT 80
EV VF VY I+VD RHL L+ADYMT
Sbjct: 1614 EVGGVFNVYKIDVDSRHLELIADYMT 1639
>gi|50312167|ref|XP_456115.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49645251|emb|CAG98823.1| KLLA0F23243p [Kluyveromyces lactis]
Length = 1653
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 66/122 (54%), Gaps = 5/122 (4%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
NGK +L T+G+N + +D+N + ND+ + TYG+EAA I+ E+ NVF+ Y
Sbjct: 1505 NGKRVLVTEGVNFQAMWDQDDFIDINGIRSNDVAAVLKTYGVEAARNTIVNEINNVFSRY 1564
Query: 64 GIEVDPRHLSLVADYMTHS----EFDLIIMVSKSWMLDEVK-STTARSVTPACEPNSHHD 118
I V RHL L+AD MT F+ M S + L ++ TT + +T A N H +
Sbjct: 1565 AISVSFRHLDLIADMMTRQGNYLAFNRQGMESSTSSLMKMSYETTCQFLTKAVLDNEHEE 1624
Query: 119 VK 120
+K
Sbjct: 1625 LK 1626
>gi|342320744|gb|EGU12683.1| DNA-directed RNA polymerase [Rhodotorula glutinis ATCC 204091]
Length = 1782
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 51/71 (71%), Gaps = 1/71 (1%)
Query: 11 TDGINVNYISQYRH-LLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDP 69
T+G+N+ + Q + ++DLNKL NDI + TYG+EAA II E+ VF+VYGI VD
Sbjct: 1638 TEGVNLRQLWQIGYGIVDLNKLGTNDIGAILRTYGVEAARTAIINEMSAVFSVYGIGVDY 1697
Query: 70 RHLSLVADYMT 80
RHL+++ADYMT
Sbjct: 1698 RHLTIIADYMT 1708
>gi|331224168|ref|XP_003324756.1| DNA-directed RNA polymerase I subunit A1 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|309303746|gb|EFP80337.1| DNA-directed RNA polymerase I subunit A1 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 1887
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 51/71 (71%), Gaps = 1/71 (1%)
Query: 11 TDGINVNYISQYRH-LLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDP 69
T+G N+ + H +++L++LY NDI+ M TYG+EAA II+E+ VF VYGI VD
Sbjct: 1747 TEGANLIAAWDFGHNIIELDELYSNDINAMLKTYGVEAARSSIIKEISGVFNVYGISVDY 1806
Query: 70 RHLSLVADYMT 80
RHL+++ADYMT
Sbjct: 1807 RHLTVIADYMT 1817
>gi|116204821|ref|XP_001228221.1| hypothetical protein CHGG_10294 [Chaetomium globosum CBS 148.51]
gi|88176422|gb|EAQ83890.1| hypothetical protein CHGG_10294 [Chaetomium globosum CBS 148.51]
Length = 1475
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 48/74 (64%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
L+ TDG N+ + QY ++ N++ NDI + YG+EA I+ E+ VFA +GI V
Sbjct: 1364 LVHTDGANLRAMQQYGDYINPNRISTNDIAQVLEVYGVEACRSNIVAELSGVFAGHGIAV 1423
Query: 68 DPRHLSLVADYMTH 81
DPRHL+L+ADYMT
Sbjct: 1424 DPRHLNLIADYMTR 1437
>gi|328854434|gb|EGG03566.1| hypothetical protein MELLADRAFT_75289 [Melampsora larici-populina
98AG31]
Length = 1725
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 50/71 (70%), Gaps = 1/71 (1%)
Query: 11 TDGINVNYISQYRH-LLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDP 69
T+G N+ + + ++++N+LY NDI + TYG+EAA IIRE+ VF VYGI VD
Sbjct: 1583 TEGANLKAAWSFGYEIIEMNQLYSNDISAILRTYGVEAARAAIIREMSGVFGVYGIGVDY 1642
Query: 70 RHLSLVADYMT 80
RHL+++ADYMT
Sbjct: 1643 RHLTVIADYMT 1653
>gi|189191780|ref|XP_001932229.1| DNA-directed RNA polymerase I subunit RPA1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187973835|gb|EDU41334.1| DNA-directed RNA polymerase I subunit RPA1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 1790
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 52/75 (69%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
++++ T+G N+ + +Y H++D+N+ NDI M YG+EA I+RE+ NVF+ +GI
Sbjct: 1560 ENVINTEGSNLIAMREYGHIIDVNRTLTNDIAAMLRIYGVEAGRATIVREMHNVFSGHGI 1619
Query: 66 EVDPRHLSLVADYMT 80
VD RHL+L+AD MT
Sbjct: 1620 SVDHRHLNLIADTMT 1634
>gi|440295347|gb|ELP88260.1| DNA-directed RNA polymerase I subunit RPA1, putative [Entamoeba
invadens IP1]
Length = 1566
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 54/78 (69%), Gaps = 2/78 (2%)
Query: 4 NGKHL--LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
+GK L + T+G+N+ ++++ +D+N + ND++ ++ TYG+EAA V+I E+ VF
Sbjct: 1413 DGKTLYYVMTEGVNLRKMAEFAEYVDVNTIESNDVYAVSQTYGVEAARAVLINEIGGVFR 1472
Query: 62 VYGIEVDPRHLSLVADYM 79
YGIEVD RHL+LV D M
Sbjct: 1473 AYGIEVDSRHLNLVGDAM 1490
>gi|403418854|emb|CCM05554.1| predicted protein [Fibroporia radiculosa]
Length = 1738
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 51/80 (63%), Gaps = 5/80 (6%)
Query: 6 KHLLKTDGINVNYISQYR-----HLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 60
K+ L T+G N+ + Q+ ++D N +Y NDI+ + YG+EAA I+RE+ VF
Sbjct: 1566 KYTLTTNGSNIPGLWQFACRDADSMIDENGIYSNDIYAILCAYGVEAARATILREIGGVF 1625
Query: 61 AVYGIEVDPRHLSLVADYMT 80
VY I+VD RHL L+ADYMT
Sbjct: 1626 GVYKIDVDSRHLELIADYMT 1645
>gi|452981607|gb|EME81367.1| hypothetical protein MYCFIDRAFT_64562 [Pseudocercospora fijiensis
CIRAD86]
Length = 1625
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 49/73 (67%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 68
L G+N+ + ++H ++ N +Y N IH + YG+EAA I++E+++VF +GI VD
Sbjct: 1466 LLASGVNIKAMWDFQHAINPNHIYTNSIHDILLYYGVEAARAAIVKELQSVFGGHGISVD 1525
Query: 69 PRHLSLVADYMTH 81
PRHL L+ADYMT
Sbjct: 1526 PRHLMLIADYMTR 1538
>gi|260940725|ref|XP_002614662.1| hypothetical protein CLUG_05440 [Clavispora lusitaniae ATCC 42720]
gi|238851848|gb|EEQ41312.1| hypothetical protein CLUG_05440 [Clavispora lusitaniae ATCC 42720]
Length = 1248
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 48/78 (61%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
NG+ +L T+G+N + + +D+N + NDI + TYG+EAA I+ E+ NVF+ Y
Sbjct: 1098 NGRRVLTTEGVNFKAMWEQDDFIDVNGVRSNDISAVLRTYGVEAARNTIVNEINNVFSTY 1157
Query: 64 GIEVDPRHLSLVADYMTH 81
I V RHL L+AD MT
Sbjct: 1158 AISVSSRHLDLIADMMTR 1175
>gi|123497258|ref|XP_001327144.1| DNA-directed RNA polymerase I 190 kDa polypeptide-related protein
[Trichomonas vaginalis G3]
gi|121910069|gb|EAY14921.1| DNA-directed RNA polymerase I 190 kDa polypeptide-related protein
[Trichomonas vaginalis G3]
Length = 257
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 55/79 (69%), Gaps = 1/79 (1%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
+G+ ++ T+G N IS+ R +D+NK Y NDI + YGIEAA II+EV +VF Y
Sbjct: 111 SGRPIIVTEGANYGEISK-RLEIDMNKFYTNDIAIILKHYGIEAARMAIIKEVNSVFKNY 169
Query: 64 GIEVDPRHLSLVADYMTHS 82
I+VD RHLSL+AD++T++
Sbjct: 170 MIDVDMRHLSLIADFVTNT 188
>gi|448509658|ref|XP_003866188.1| Rpa190 RNA polymerase I subunit A190 [Candida orthopsilosis Co
90-125]
gi|380350526|emb|CCG20748.1| Rpa190 RNA polymerase I subunit A190 [Candida orthopsilosis Co
90-125]
Length = 1651
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 49/80 (61%)
Query: 2 ETNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
+T+GK +L T+G+N + + +D+N + NDI + TYG+EAA I+ E+ VF
Sbjct: 1500 DTSGKRILTTEGVNFKAMWEQDDFIDVNAITSNDIASVLRTYGVEAARNTIVNEIYRVFD 1559
Query: 62 VYGIEVDPRHLSLVADYMTH 81
YGI V RHL L+AD MT
Sbjct: 1560 TYGISVSSRHLDLIADMMTR 1579
>gi|320582105|gb|EFW96323.1| alpha subunit of RNA polymerase I [Ogataea parapolymorpha DL-1]
Length = 1631
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 48/77 (62%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
GK +L T+G+N + ++ +++N + NDI + TYG+EAA I+ EV NVF Y
Sbjct: 1483 GKRILVTEGVNFGAMWEHDAFINVNDIRSNDIAAVLRTYGVEAARNTIVNEVNNVFGRYA 1542
Query: 65 IEVDPRHLSLVADYMTH 81
I V RHL L+ADYMT
Sbjct: 1543 ISVSSRHLDLIADYMTR 1559
>gi|406695188|gb|EKC98500.1| hypothetical protein A1Q2_07182 [Trichosporon asahii var. asahii
CBS 8904]
Length = 149
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 60/99 (60%), Gaps = 6/99 (6%)
Query: 24 HLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH-- 81
L+DL+KL ND++ + TYG+EAA R II E+ ++F YGI VD RHL+++ADYMTH
Sbjct: 19 ELIDLDKLGSNDVYAILRTYGVEAARRSIINEMSSIFGAYGIGVDYRHLTVIADYMTHHG 78
Query: 82 --SEFDLIIMVSKSWMLDEVKSTTARSVTPACEPNSHHD 118
F+ + SKS L +K++ +V E H D
Sbjct: 79 GYRPFNRTGIASKSSPL--LKASFETTVAFLSEATLHGD 115
>gi|393244933|gb|EJD52444.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Auricularia delicata TFB-10046 SS5]
Length = 1718
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 52/77 (67%), Gaps = 1/77 (1%)
Query: 5 GKHLLKTDGINVNYI-SQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
G ++++ +G N I + H++D+N++ NDIH + TYG+E A R I+ EV VFA Y
Sbjct: 1565 GGNVIECEGSNFAGIWHRTGHVVDVNQIRSNDIHAILKTYGVEMARRTIVDEVSGVFAGY 1624
Query: 64 GIEVDPRHLSLVADYMT 80
I+VD RHL L+ADYMT
Sbjct: 1625 NIDVDRRHLELIADYMT 1641
>gi|224002505|ref|XP_002290924.1| DNA directed RNA polymerase i, alpha subunit [Thalassiosira
pseudonana CCMP1335]
gi|220972700|gb|EED91031.1| DNA directed RNA polymerase i, alpha subunit [Thalassiosira
pseudonana CCMP1335]
Length = 1671
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 2 ETNGKHLLKTDGINVNYI-SQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 60
E L+T G N + S ++D NKL NDI + YG+EAA I +++ VF
Sbjct: 1522 EEGRGRCLQTAGCNFEEMWSLDEGVVDHNKLVSNDIWGIRCAYGVEAARMSIADQIRGVF 1581
Query: 61 AVYGIEVDPRHLSLVADYMTH 81
AVYGI VDPRHLSL+AD+MT+
Sbjct: 1582 AVYGISVDPRHLSLIADFMTY 1602
>gi|313231696|emb|CBY08809.1| unnamed protein product [Oikopleura dioica]
Length = 859
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 46/71 (64%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
T+GIN +Y +LDLN++ ND++ + YGIEAA + RE+ VF YGI VD R
Sbjct: 718 TEGINFPGFYKYPEMLDLNRISTNDVNAFRNAYGIEAAVMTMQREIDKVFKPYGIAVDKR 777
Query: 71 HLSLVADYMTH 81
H SLVADY+T
Sbjct: 778 HTSLVADYVTQ 788
>gi|384247373|gb|EIE20860.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Coccomyxa subellipsoidea C-169]
Length = 1671
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 33/73 (45%), Positives = 48/73 (65%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 68
++TDGIN L+D+ + ND+ + T+G+EAA ++ EV +VF YGI VD
Sbjct: 1530 VQTDGINFEGAWANYDLVDVTAVTANDVGAVLRTFGVEAARATVVAEVSSVFGAYGIGVD 1589
Query: 69 PRHLSLVADYMTH 81
PRHLSL++D+MTH
Sbjct: 1590 PRHLSLISDHMTH 1602
>gi|313240928|emb|CBY33212.1| unnamed protein product [Oikopleura dioica]
Length = 863
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 46/71 (64%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
T+GIN +Y +LDLN++ ND++ + YGIEAA + RE+ VF YGI VD R
Sbjct: 722 TEGINFPGFYRYPEMLDLNRISTNDVNAFRNAYGIEAAVMTMQREIDKVFKPYGIAVDKR 781
Query: 71 HLSLVADYMTH 81
H SLVADY+T
Sbjct: 782 HTSLVADYVTQ 792
>gi|453084899|gb|EMF12943.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Mycosphaerella populorum SO2202]
Length = 1742
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 47/72 (65%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
T G+NV + Y+H+++ + +Y N + + YG+EA I+RE++ VF +GI VDPR
Sbjct: 1568 TSGVNVRAMWDYQHIINPHYIYTNSCFDIFTNYGVEAGRAAIVRELQGVFGGHGISVDPR 1627
Query: 71 HLSLVADYMTHS 82
HL L+ADYMT
Sbjct: 1628 HLMLIADYMTRG 1639
>gi|385302163|gb|EIF46309.1| alpha subunit of rna polymerase i [Dekkera bruxellensis AWRI1499]
Length = 613
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 50/80 (62%)
Query: 1 METNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 60
+ G L T+G+N + ++ LD++K+ NDI + S YG+EAA I+ EV NVF
Sbjct: 483 LHEEGSRSLVTEGVNFPAMWEHDSFLDVDKISSNDIAAVLSVYGVEAARNTIVNEVINVF 542
Query: 61 AVYGIEVDPRHLSLVADYMT 80
+ Y IEV RHL L+ADYMT
Sbjct: 543 SRYAIEVSSRHLDLIADYMT 562
>gi|171690214|ref|XP_001910032.1| hypothetical protein [Podospora anserina S mat+]
gi|170945055|emb|CAP71166.1| unnamed protein product [Podospora anserina S mat+]
Length = 1706
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 48/74 (64%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
L+ T+G+N+ + Y ++ NKL NDI + YG+EAA I+RE+ VF +GI V
Sbjct: 1555 LVHTEGVNLRAMQLYADYINPNKLQTNDIAQVLEFYGVEAARANIVRELSGVFDSHGIAV 1614
Query: 68 DPRHLSLVADYMTH 81
D RHLSL+ADYMT
Sbjct: 1615 DKRHLSLIADYMTR 1628
>gi|399218092|emb|CCF74979.1| unnamed protein product [Babesia microti strain RI]
Length = 1746
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/80 (53%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 3 TNGKHLLKTDGINVNY-ISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
T ++ L+ G N+N IS LD N++ NDI + TYGIEAA II+E+K VFA
Sbjct: 1553 TGAEYELQCSGSNLNLLISLINDGLDCNRVTSNDIIAIHHTYGIEAAYAKIIQELKMVFA 1612
Query: 62 VYGIEVDPRHLSLVADYMTH 81
YGI VD RHLSLVADYMT+
Sbjct: 1613 SYGISVDHRHLSLVADYMTN 1632
>gi|451853513|gb|EMD66807.1| hypothetical protein COCSADRAFT_35290 [Cochliobolus sativus ND90Pr]
Length = 1781
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 57/88 (64%), Gaps = 4/88 (4%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
++++ T+G N+ + +Y H++D+N+ NDI M YG+EAA I+RE+ VF+ +GI
Sbjct: 1554 ENVINTEGSNLIAMREYAHIIDVNRTMTNDIVAMLHLYGVEAARATIVREMHAVFSGHGI 1613
Query: 66 EVDPRHLSLVADYMTH----SEFDLIIM 89
VD RHL+L+AD MT S F+ I M
Sbjct: 1614 SVDQRHLNLIADTMTKGGGFSPFNRIGM 1641
>gi|392568044|gb|EIW61218.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Trametes versicolor FP-101664 SS1]
Length = 1739
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 54/84 (64%), Gaps = 7/84 (8%)
Query: 4 NGKHL--LKTDGINVNYISQY-----RHLLDLNKLYVNDIHYMASTYGIEAANRVIIREV 56
NG+ + L T+G N+ + Q+ ++D N +Y NDIH + YG+EAA I++E+
Sbjct: 1577 NGEKIFSLTTNGSNLPGLWQFACGKGNSIIDHNGIYSNDIHALLCAYGVEAARAAILQEI 1636
Query: 57 KNVFAVYGIEVDPRHLSLVADYMT 80
VFAVY I+VD RHL L+ADYMT
Sbjct: 1637 GGVFAVYKIDVDIRHLELIADYMT 1660
>gi|452002907|gb|EMD95365.1| hypothetical protein COCHEDRAFT_1129734 [Cochliobolus heterostrophus
C5]
Length = 1779
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 57/88 (64%), Gaps = 4/88 (4%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
++++ T+G N+ + +Y H++D+N+ NDI M YG+EAA I+RE+ VF+ +GI
Sbjct: 1554 ENVINTEGSNLIAMREYAHIIDVNRTMTNDIVAMLHLYGVEAARATIVREMHAVFSGHGI 1613
Query: 66 EVDPRHLSLVADYMTH----SEFDLIIM 89
VD RHL+L+AD MT S F+ I M
Sbjct: 1614 SVDQRHLNLIADTMTKGGGFSPFNRIGM 1641
>gi|156094456|ref|XP_001613265.1| DNA-directed RNA polymerase I 190 kDa polypeptide [Plasmodium vivax
Sal-1]
gi|148802139|gb|EDL43538.1| DNA-directed RNA polymerase I 190 kDa polypeptide, putative
[Plasmodium vivax]
Length = 2695
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 7/82 (8%)
Query: 1 METNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 60
++ GK++ K I YI D KLY NDI+ + TYGIEA I +E+K VF
Sbjct: 2549 LQIEGKNIYKLYNIKDKYI-------DKTKLYCNDIYTIVKTYGIEAGRLCITKELKKVF 2601
Query: 61 AVYGIEVDPRHLSLVADYMTHS 82
YGI++D RHLS ++D+MTH+
Sbjct: 2602 EAYGIKIDFRHLSFISDFMTHT 2623
>gi|367035594|ref|XP_003667079.1| hypothetical protein MYCTH_2312447 [Myceliophthora thermophila ATCC
42464]
gi|347014352|gb|AEO61834.1| hypothetical protein MYCTH_2312447 [Myceliophthora thermophila ATCC
42464]
Length = 1721
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 50/75 (66%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
L+ T+G N+ + QY ++ N++ NDI + YG+EA I++E+ VF+ +GI V
Sbjct: 1569 LVHTEGANLRAMQQYGDYINPNRISTNDIAQVLEVYGVEACRSNIVQELSAVFSGHGIAV 1628
Query: 68 DPRHLSLVADYMTHS 82
DPRHL+L+ADYMT +
Sbjct: 1629 DPRHLNLIADYMTRA 1643
>gi|302307745|ref|NP_984470.2| ADR374Cp [Ashbya gossypii ATCC 10895]
gi|299789146|gb|AAS52294.2| ADR374Cp [Ashbya gossypii ATCC 10895]
gi|374107684|gb|AEY96592.1| FADR374Cp [Ashbya gossypii FDAG1]
Length = 1640
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 65/122 (53%), Gaps = 5/122 (4%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
NGK +L T+G+N + +D+N + ND+ + TYG+EAA I+ E+ NVF+ Y
Sbjct: 1490 NGKRVLVTEGVNFQAMWDQEAFIDVNGITSNDVSAVLKTYGVEAARNTIVNEINNVFSRY 1549
Query: 64 GIEVDPRHLSLVADYMTHS----EFDLIIMVSKSWMLDEVK-STTARSVTPACEPNSHHD 118
I V RHL L+AD MT F+ M S + L ++ TT + +T A N +
Sbjct: 1550 AISVSYRHLDLIADMMTRQGTYLAFNRQGMESSTSSLMKMSYETTCQFLTKAVLDNEREE 1609
Query: 119 VK 120
+K
Sbjct: 1610 LK 1611
>gi|303289108|ref|XP_003063842.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454910|gb|EEH52215.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 1665
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 46/72 (63%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+++TDG+N L+D + ND++ M TYG+EAA ++ EV+ VF VYGI V
Sbjct: 1506 MVQTDGVNFAAAWANDDLVDCANVKTNDVYAMMQTYGVEAARETLVAEVRGVFGVYGIAV 1565
Query: 68 DPRHLSLVADYM 79
D RHLSL+ D+M
Sbjct: 1566 DARHLSLIGDFM 1577
>gi|297817092|ref|XP_002876429.1| hypothetical protein ARALYDRAFT_486216 [Arabidopsis lyrata subsp.
lyrata]
gi|297322267|gb|EFH52688.1| hypothetical protein ARALYDRAFT_486216 [Arabidopsis lyrata subsp.
lyrata]
Length = 1678
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 49/81 (60%)
Query: 2 ETNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
E L G++ + +++ LD+ LY N IH M + +G+EAA IIRE+ +VF
Sbjct: 1527 EKKASPALHASGVDFPALWEFQDKLDVRYLYSNSIHDMLNVFGVEAARETIIREINHVFK 1586
Query: 62 VYGIEVDPRHLSLVADYMTHS 82
YGI V RHL+L+ADYMT S
Sbjct: 1587 SYGISVSIRHLNLIADYMTFS 1607
>gi|15230368|ref|NP_191325.1| DNA-directed RNA polymerase I subunit A1 [Arabidopsis thaliana]
gi|4678281|emb|CAB41189.1| DNA-directed RNA polymerase I 190K chain-like protein [Arabidopsis
thaliana]
gi|332646163|gb|AEE79684.1| DNA-directed RNA polymerase I subunit A1 [Arabidopsis thaliana]
Length = 1670
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 49/81 (60%)
Query: 2 ETNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
E L G++ + +++ LD+ LY N IH M + +G+EAA IIRE+ +VF
Sbjct: 1519 EKKASPALHASGVDFPALWEFQDKLDVRYLYSNSIHDMLNIFGVEAARETIIREINHVFK 1578
Query: 62 VYGIEVDPRHLSLVADYMTHS 82
YGI V RHL+L+ADYMT S
Sbjct: 1579 SYGISVSIRHLNLIADYMTFS 1599
>gi|302901596|ref|XP_003048471.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256729404|gb|EEU42758.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 1674
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 53/81 (65%)
Query: 1 METNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 60
+E G H++ T G+N+ + +Y +D +++ NDI + + YG+EAA I++E+ VF
Sbjct: 1516 VEEKGVHVIHTAGVNLQAMQRYSDFIDPHRIQTNDIAAVLAVYGVEAARSNIVQELAGVF 1575
Query: 61 AVYGIEVDPRHLSLVADYMTH 81
+GI+VD RHL+L+ D+MT
Sbjct: 1576 GSHGIKVDNRHLNLIGDHMTR 1596
>gi|124506109|ref|XP_001351652.1| RNA polymerase I [Plasmodium falciparum 3D7]
gi|23504580|emb|CAD51459.1| RNA polymerase I [Plasmodium falciparum 3D7]
Length = 2914
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 7/82 (8%)
Query: 1 METNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 60
++ GK++ K I YI D KLY NDI+ + TYGIEA I +E+K VF
Sbjct: 2767 LQIEGKNIYKLYNIKDKYI-------DKTKLYCNDIYAIVKTYGIEAGRLCITKELKKVF 2819
Query: 61 AVYGIEVDPRHLSLVADYMTHS 82
YGI++D RHLS ++D+MTH+
Sbjct: 2820 DAYGIQIDFRHLSFISDFMTHT 2841
>gi|323450843|gb|EGB06722.1| hypothetical protein AURANDRAFT_65384 [Aureococcus anophagefferens]
Length = 1610
Score = 72.4 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 33/55 (60%), Positives = 41/55 (74%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMT 80
+D++ L NDI + TYG+EAA I+REV VF VYGIEV+P HLSL+ADYMT
Sbjct: 1485 VDVDNLESNDISGILRTYGVEAARASIVREVMGVFGVYGIEVEPHHLSLIADYMT 1539
>gi|414322|gb|AAA72349.1| unnamed protein product [Plasmodium falciparum]
Length = 2910
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 7/82 (8%)
Query: 1 METNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 60
++ GK++ K I YI D KLY NDI+ + TYGIEA I +E+K VF
Sbjct: 2766 LQIEGKNIYKLYNIKDKYI-------DKTKLYCNDIYAIVKTYGIEAGRLCITKELKKVF 2818
Query: 61 AVYGIEVDPRHLSLVADYMTHS 82
YGI++D RHLS ++D+MTH+
Sbjct: 2819 DAYGIQIDFRHLSFISDFMTHT 2840
>gi|398396432|ref|XP_003851674.1| hypothetical protein MYCGRDRAFT_94196 [Zymoseptoria tritici IPO323]
gi|339471554|gb|EGP86650.1| hypothetical protein MYCGRDRAFT_94196 [Zymoseptoria tritici IPO323]
Length = 1722
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 48/74 (64%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L G+N+ + + +H++ + LY N IH + YG+EAA I++E+ VF +GI V
Sbjct: 1554 ILAASGVNIPAMWELQHIIHPHHLYTNSIHDILVHYGVEAARNAIVKELAGVFGGHGISV 1613
Query: 68 DPRHLSLVADYMTH 81
DPRHL L+ADYMT
Sbjct: 1614 DPRHLMLIADYMTR 1627
>gi|448106653|ref|XP_004200803.1| Piso0_003410 [Millerozyma farinosa CBS 7064]
gi|448109741|ref|XP_004201434.1| Piso0_003410 [Millerozyma farinosa CBS 7064]
gi|359382225|emb|CCE81062.1| Piso0_003410 [Millerozyma farinosa CBS 7064]
gi|359382990|emb|CCE80297.1| Piso0_003410 [Millerozyma farinosa CBS 7064]
Length = 1639
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 48/81 (59%)
Query: 1 METNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 60
+E K +L T+G+N + + +D N++ NDI+ + TYG+EAA I+ E+ NVF
Sbjct: 1486 VEAGSKRVLTTEGVNFKAMWEQDDFIDPNRITSNDIYAVLKTYGVEAARNTIVNEINNVF 1545
Query: 61 AVYGIEVDPRHLSLVADYMTH 81
Y I V RHL L+AD MT
Sbjct: 1546 ERYAIAVSSRHLDLIADMMTR 1566
>gi|221057169|ref|XP_002259722.1| RNA polymerase I [Plasmodium knowlesi strain H]
gi|193809794|emb|CAQ40498.1| RNA polymerase I, putative [Plasmodium knowlesi strain H]
Length = 2592
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Query: 3 TNGKHLLKTDGINVNYISQYRH-LLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
+ ++ L+ +G N+ + + +D KLY NDI+ + TYGIEA I +E+K VF
Sbjct: 2440 SGAEYELQIEGKNIFQLYNIKDTFIDKTKLYCNDIYTIVKTYGIEAGRLCITKELKKVFE 2499
Query: 62 VYGIEVDPRHLSLVADYMTHS 82
YGI++D RHLS ++D+MTH+
Sbjct: 2500 AYGIKIDFRHLSFISDFMTHT 2520
>gi|50555960|ref|XP_505388.1| YALI0F13783p [Yarrowia lipolytica]
gi|49651258|emb|CAG78195.1| YALI0F13783p [Yarrowia lipolytica CLIB122]
Length = 1628
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 47/73 (64%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 68
L T+G+N + + +D+N +Y NDI+ + TYG+EAA +++E+ NVF Y I V+
Sbjct: 1481 LTTEGVNFREMWEQGEFIDVNAIYSNDIYAVLKTYGVEAARNTMVQEINNVFKTYAITVN 1540
Query: 69 PRHLSLVADYMTH 81
RHL L+AD MT
Sbjct: 1541 LRHLELIADMMTR 1553
>gi|298707846|emb|CBJ30252.1| RNA polymerase A(I) large subunit [Ectocarpus siliculosus]
Length = 651
Score = 72.0 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 33/56 (58%), Positives = 40/56 (71%)
Query: 25 LLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMT 80
+L+LNKL NDI + TYG+EAA I+ E+ VF YGI VDPRHL LVAD+MT
Sbjct: 514 ILNLNKLTSNDIWAVCQTYGVEAARASIVAEITGVFGAYGIAVDPRHLGLVADHMT 569
>gi|84998490|ref|XP_953966.1| DNA-directed RNA polymerase I [Theileria annulata]
gi|65304964|emb|CAI73289.1| DNA-directed RNA polymerase I, putative [Theileria annulata]
Length = 1999
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 53/77 (68%), Gaps = 1/77 (1%)
Query: 6 KHLLKTDGINVNYISQYR-HLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
++ L DG N+ + R +++D N++ +ND+ + YGIEAA I+ E++ VF+VYG
Sbjct: 1835 EYTLHCDGTNLKRLFMLRENIVDFNRIKMNDVATVFKYYGIEAARSCIVSELQKVFSVYG 1894
Query: 65 IEVDPRHLSLVADYMTH 81
I+VD RHL+L+AD+MT
Sbjct: 1895 IKVDYRHLTLIADFMTQ 1911
>gi|83317635|ref|XP_731247.1| RNA polymerase A/beta'/A'' subunit [Plasmodium yoelii yoelii 17XNL]
gi|23491222|gb|EAA22812.1| RNA polymerase A/beta'/A'' subunit, putative [Plasmodium yoelii
yoelii]
Length = 2594
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 7/82 (8%)
Query: 1 METNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 60
++ G+++ K I YI D KLY NDI+ + TYGIEA I +E+K VF
Sbjct: 2448 LQIEGRNVYKLFNIKDKYI-------DKTKLYCNDIYTIVKTYGIEAGRLCITKELKKVF 2500
Query: 61 AVYGIEVDPRHLSLVADYMTHS 82
YGI++D RHLS ++D+MTH+
Sbjct: 2501 EAYGIKIDFRHLSFISDFMTHT 2522
>gi|68076569|ref|XP_680204.1| RNA polymerase I [Plasmodium berghei strain ANKA]
gi|56501099|emb|CAH97287.1| RNA polymerase I, putative [Plasmodium berghei]
Length = 2577
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 7/82 (8%)
Query: 1 METNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 60
++ G+++ K I YI D KLY NDI+ + TYGIEA I +E+K VF
Sbjct: 2431 LQIEGRNVYKLFNIKDKYI-------DKTKLYCNDIYTIVKTYGIEAGRLCITKELKKVF 2483
Query: 61 AVYGIEVDPRHLSLVADYMTHS 82
YGI++D RHLS ++D+MTH+
Sbjct: 2484 EAYGIKIDFRHLSFISDFMTHT 2505
>gi|255713026|ref|XP_002552795.1| KLTH0D01628p [Lachancea thermotolerans]
gi|238934175|emb|CAR22357.1| KLTH0D01628p [Lachancea thermotolerans CBS 6340]
Length = 1654
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 47/78 (60%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
NGK +L T+G+N + +D+N + ND+ + TYG+EAA I+ E+ NVF+ Y
Sbjct: 1504 NGKRILVTEGVNFQEMWDQDAFIDVNGITSNDVASVLKTYGVEAARNTIVNEINNVFSRY 1563
Query: 64 GIEVDPRHLSLVADYMTH 81
I V RHL L+AD MT
Sbjct: 1564 AISVSFRHLDLIADMMTR 1581
>gi|449299692|gb|EMC95705.1| hypothetical protein BAUCODRAFT_34468 [Baudoinia compniacensis UAMH
10762]
Length = 1744
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 53/75 (70%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L G+N+ + +Y+H+++ ++LY N ++ + YG+EAA I+ E+++VF +GI V
Sbjct: 1583 ILALSGVNIPAMWEYQHVINPHRLYTNSVYDILRHYGVEAARNAIVLELQSVFGGHGISV 1642
Query: 68 DPRHLSLVADYMTHS 82
+ RHL+L+ADYMT S
Sbjct: 1643 NARHLTLIADYMTRS 1657
>gi|190347356|gb|EDK39611.2| hypothetical protein PGUG_03709 [Meyerozyma guilliermondii ATCC 6260]
Length = 1632
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%)
Query: 2 ETNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
+ G +L T+G+N + ++ +D+NK+ NDI + TYG+EAA I+ E+ NVF
Sbjct: 1482 DAGGARVLTTEGVNFGAMWEHDDFIDVNKITSNDIAAVLKTYGVEAARNTIVNEINNVFD 1541
Query: 62 VYGIEVDPRHLSLVADYMTH 81
Y I V RHL L+ D MT
Sbjct: 1542 RYAISVSSRHLDLIGDMMTR 1561
>gi|146416717|ref|XP_001484328.1| hypothetical protein PGUG_03709 [Meyerozyma guilliermondii ATCC 6260]
Length = 1632
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%)
Query: 2 ETNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
+ G +L T+G+N + ++ +D+NK+ NDI + TYG+EAA I+ E+ NVF
Sbjct: 1482 DAGGARVLTTEGVNFGAMWEHDDFIDVNKITSNDIAAVLKTYGVEAARNTIVNEINNVFD 1541
Query: 62 VYGIEVDPRHLSLVADYMTH 81
Y I V RHL L+ D MT
Sbjct: 1542 RYAISVSSRHLDLIGDMMTR 1561
>gi|410083934|ref|XP_003959544.1| hypothetical protein KAFR_0K00540 [Kazachstania africana CBS 2517]
gi|372466136|emb|CCF60409.1| hypothetical protein KAFR_0K00540 [Kazachstania africana CBS 2517]
Length = 1662
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
NGK +L T+G+N N + +D++ + ND+ + TYG+EAA ++ E+ NVF+ Y
Sbjct: 1512 NGKRVLVTEGVNFNAMWDQEDFIDVDGIRSNDVSAVLKTYGVEAARNTVVNEINNVFSRY 1571
Query: 64 GIEVDPRHLSLVADYMTH 81
I V RHL L+AD MT
Sbjct: 1572 AISVSFRHLDLLADMMTR 1589
>gi|169623425|ref|XP_001805120.1| hypothetical protein SNOG_14953 [Phaeosphaeria nodorum SN15]
gi|160704980|gb|EAT77805.2| hypothetical protein SNOG_14953 [Phaeosphaeria nodorum SN15]
Length = 1691
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 48/70 (68%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
T G N+ + +Y H++D+N+++ NDI M YG+EA I+RE+ VF+ +GI VD R
Sbjct: 1522 TAGSNLLAMREYSHIIDVNRIFTNDIVGMLQLYGVEACRATIVREMHAVFSGHGISVDLR 1581
Query: 71 HLSLVADYMT 80
HL+L+AD MT
Sbjct: 1582 HLNLIADTMT 1591
>gi|344231880|gb|EGV63759.1| alpha subunit of RNA polymerase I [Candida tenuis ATCC 10573]
Length = 1625
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 47/78 (60%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
+G+ L T+G+N + + +D+N + NDI+ + TYG+EAA I+RE+ NVF Y
Sbjct: 1478 SGERHLTTEGVNFRAMWEQDDFIDVNSITSNDIYQVLKTYGVEAARNTIVREINNVFERY 1537
Query: 64 GIEVDPRHLSLVADYMTH 81
I V RHL L+ D MT
Sbjct: 1538 AINVSSRHLDLIGDMMTR 1555
>gi|346323105|gb|EGX92703.1| DNA-directed RNA polymerase I subunit RPA1 [Cordyceps militaris CM01]
Length = 1929
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 48/73 (65%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 68
++ G+N++ + + +D +K+ NDI + S YG+EA I+RE+ NVF +GI VD
Sbjct: 1523 IEASGVNLHAMQTFAEYIDPDKIKTNDIASVLSMYGVEACRASIVRELGNVFGGHGISVD 1582
Query: 69 PRHLSLVADYMTH 81
RHL+L+ADYMT
Sbjct: 1583 NRHLNLIADYMTR 1595
>gi|341038609|gb|EGS23601.1| DNA-directed RNA polymerase-like protein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 1713
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 50/77 (64%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
+ L+ T G N+ + QY ++ N++ NDI + YG+EA I+RE+ +VFA +GI
Sbjct: 1560 EKLVHTSGSNIRAMQQYGDYINPNRIQTNDIAQVLEVYGVEACRNNIVRELSSVFAGHGI 1619
Query: 66 EVDPRHLSLVADYMTHS 82
VD RHL+L+AD+MT +
Sbjct: 1620 AVDQRHLNLIADFMTRN 1636
>gi|70946579|ref|XP_742990.1| RNA polymerase I [Plasmodium chabaudi chabaudi]
gi|56522268|emb|CAH80362.1| RNA polymerase I, putative [Plasmodium chabaudi chabaudi]
Length = 1045
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 41/57 (71%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHS 82
+D KLY NDI+ + TYGIEA I +E+K VF YGI++D RHLS ++D+MTH+
Sbjct: 988 IDKTKLYCNDIYTIVKTYGIEAGRLCITKELKKVFEAYGIKIDFRHLSFISDFMTHT 1044
>gi|428185541|gb|EKX54393.1| hypothetical protein GUITHDRAFT_160655 [Guillardia theta CCMP2712]
Length = 1521
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 58/88 (65%), Gaps = 8/88 (9%)
Query: 3 TNGKHLLKTDGINVNYISQYR--------HLLDLNKLYVNDIHYMASTYGIEAANRVIIR 54
++ +H + T+G+N++ ++ ++ LDLN+L NDI + + YG+EAA ++++
Sbjct: 1365 SDKQHSIMTEGVNLDLLALWQLNRQKSIGGALDLNRLRCNDITQVRNVYGVEAARKMLLD 1424
Query: 55 EVKNVFAVYGIEVDPRHLSLVADYMTHS 82
E+ +VF YGI VD RHLSL++D M ++
Sbjct: 1425 EISSVFGAYGIGVDLRHLSLISDAMMYA 1452
>gi|395324163|gb|EJF56609.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Dichomitus squalens LYAD-421 SS1]
Length = 1724
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 54/84 (64%), Gaps = 7/84 (8%)
Query: 4 NGKHL--LKTDGINVNYISQY-----RHLLDLNKLYVNDIHYMASTYGIEAANRVIIREV 56
NG+ + L T+G N+ + Q+ ++D + +Y NDI+ + YG+EAA I++E+
Sbjct: 1561 NGEKIYSLTTNGSNIPGLWQFARGHGESIIDEDGIYSNDIYALLCAYGVEAARAAILKEI 1620
Query: 57 KNVFAVYGIEVDPRHLSLVADYMT 80
VFAVY I+VD RHL L+ADYMT
Sbjct: 1621 GGVFAVYKIDVDIRHLELIADYMT 1644
>gi|50286997|ref|XP_445928.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525234|emb|CAG58847.1| unnamed protein product [Candida glabrata]
Length = 1643
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 47/78 (60%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
NGK +L T+G+N + +D++ + NDI + TYG+EAA I+ E+ NVF+ Y
Sbjct: 1495 NGKRVLVTEGVNFQAMWDQEAFIDVDGITSNDIASVLQTYGVEAARNTIVNEINNVFSRY 1554
Query: 64 GIEVDPRHLSLVADYMTH 81
I V RHL L+AD MT
Sbjct: 1555 AISVSFRHLDLIADMMTR 1572
>gi|358380112|gb|EHK17791.1| hypothetical protein TRIVIDRAFT_57534 [Trichoderma virens Gv29-8]
Length = 1640
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 51/81 (62%)
Query: 2 ETNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
+ G+ ++ T G+N+ + +Y +D +++ NDI + YG+EA I+RE+ VF
Sbjct: 1483 QEKGESVINTTGVNLRAMQRYSDFIDPHRIQTNDIAAVLEVYGVEACRANIVRELSGVFG 1542
Query: 62 VYGIEVDPRHLSLVADYMTHS 82
+GI+VD RHL+L+AD+MT
Sbjct: 1543 GHGIKVDNRHLNLIADHMTRG 1563
>gi|401405454|ref|XP_003882177.1| putative DNA-directed RNA polymerase I largest subunit [Neospora
caninum Liverpool]
gi|325116591|emb|CBZ52145.1| putative DNA-directed RNA polymerase I largest subunit [Neospora
caninum Liverpool]
Length = 2799
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 42/116 (36%), Positives = 66/116 (56%), Gaps = 6/116 (5%)
Query: 3 TNGKHLLKTDGINVNYISQYR-HLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
T K ++ +G N +I + + +D N + ND+ + YGIEAA + RE++ VF+
Sbjct: 2525 TKQKVEIQCEGSNFGWIHRMKDEAIDHNGILTNDVRAVLKYYGIEAARVCLARELERVFS 2584
Query: 62 VYGIEVDPRHLSLVADYMTHS----EFDLIIM-VSKSWMLDEVKSTTARSVTPACE 112
YGI+VD RHL+L+AD+MTH F+ + M S + L T+ + +T ACE
Sbjct: 2585 AYGIKVDYRHLTLIADFMTHDGTLRPFNRLGMAASNAPFLQMSYETSFKFLTEACE 2640
>gi|221503888|gb|EEE29572.1| RNA polymerase Rpb1 domain-containing protein, putative [Toxoplasma
gondii VEG]
Length = 2676
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 42/116 (36%), Positives = 66/116 (56%), Gaps = 6/116 (5%)
Query: 3 TNGKHLLKTDGINVNYISQYR-HLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
T K ++ +G N +I + + +D N + ND+ + YGIEAA + RE++ VF+
Sbjct: 2407 TKQKVEIQCEGSNFGWIHRMKDEAIDHNGILTNDVRAVLKYYGIEAARVCLARELERVFS 2466
Query: 62 VYGIEVDPRHLSLVADYMTHS----EFDLIIM-VSKSWMLDEVKSTTARSVTPACE 112
YGI+VD RHL+L+AD+MTH F+ + M S + L T+ + +T ACE
Sbjct: 2467 AYGIKVDYRHLALIADFMTHGGTLRPFNRLGMAASNAPFLQMSYETSFKFLTEACE 2522
>gi|221485733|gb|EEE24003.1| RNA polymerase Rpb1 domain-containing protein, putative [Toxoplasma
gondii GT1]
Length = 2626
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 42/116 (36%), Positives = 66/116 (56%), Gaps = 6/116 (5%)
Query: 3 TNGKHLLKTDGINVNYISQYR-HLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
T K ++ +G N +I + + +D N + ND+ + YGIEAA + RE++ VF+
Sbjct: 2357 TKQKVEIQCEGSNFGWIHRMKDEAIDHNGILTNDVRAVLKYYGIEAARVCLARELERVFS 2416
Query: 62 VYGIEVDPRHLSLVADYMTHS----EFDLIIM-VSKSWMLDEVKSTTARSVTPACE 112
YGI+VD RHL+L+AD+MTH F+ + M S + L T+ + +T ACE
Sbjct: 2417 AYGIKVDYRHLALIADFMTHGGTLRPFNRLGMAASNAPFLQMSYETSFKFLTEACE 2472
>gi|237835339|ref|XP_002366967.1| DNA-directed RNA polymerase I largest subunit, putative [Toxoplasma
gondii ME49]
gi|211964631|gb|EEA99826.1| DNA-directed RNA polymerase I largest subunit, putative [Toxoplasma
gondii ME49]
Length = 2768
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 42/116 (36%), Positives = 66/116 (56%), Gaps = 6/116 (5%)
Query: 3 TNGKHLLKTDGINVNYISQYR-HLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
T K ++ +G N +I + + +D N + ND+ + YGIEAA + RE++ VF+
Sbjct: 2499 TKQKVEIQCEGSNFGWIHRMKDEAIDHNGILTNDVRAVLKYYGIEAARVCLARELERVFS 2558
Query: 62 VYGIEVDPRHLSLVADYMTHS----EFDLIIM-VSKSWMLDEVKSTTARSVTPACE 112
YGI+VD RHL+L+AD+MTH F+ + M S + L T+ + +T ACE
Sbjct: 2559 AYGIKVDYRHLALIADFMTHGGTLRPFNRLGMAASNAPFLQMSYETSFKFLTEACE 2614
>gi|294655924|ref|XP_002770194.1| DEHA2C10670p [Debaryomyces hansenii CBS767]
gi|199430718|emb|CAR65558.1| DEHA2C10670p [Debaryomyces hansenii CBS767]
Length = 1644
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 46/80 (57%)
Query: 2 ETNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
E GK +L T+G+N + +++N + NDI + TYG+EAA I+ EV+NVF
Sbjct: 1493 EVGGKRILTTEGVNFQAMWDQDDFINVNSISSNDIAAVLRTYGVEAARNTIVNEVQNVFD 1552
Query: 62 VYGIEVDPRHLSLVADYMTH 81
Y I V RHL L+ D MT
Sbjct: 1553 RYAIAVSSRHLDLIGDMMTR 1572
>gi|345562788|gb|EGX45801.1| hypothetical protein AOL_s00117g6 [Arthrobotrys oligospora ATCC
24927]
Length = 1634
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 48/76 (63%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
K L DG+N + I Y H++D + ++ NDI + YG+E A II+E+ +VF +GI
Sbjct: 1489 KKQLSVDGVNFHAIWDYAHVIDTSAIHSNDIAAVLRVYGVECARNTIIQEMGSVFKGHGI 1548
Query: 66 EVDPRHLSLVADYMTH 81
VD RHL+L+AD MT
Sbjct: 1549 AVDTRHLNLIADIMTR 1564
>gi|207340851|gb|EDZ69074.1| YOR341Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 1317
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 47/78 (60%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
NGK +L T+G+N + +D++ + ND+ + TYG+EAA I+ E+ NVF+ Y
Sbjct: 1167 NGKRVLVTEGVNFQAMWDQEAFIDVDGITSNDVAAVLKTYGVEAARNTIVNEINNVFSRY 1226
Query: 64 GIEVDPRHLSLVADYMTH 81
I V RHL L+AD MT
Sbjct: 1227 AISVSFRHLDLIADMMTR 1244
>gi|354545083|emb|CCE41808.1| hypothetical protein CPAR2_803580 [Candida parapsilosis]
Length = 1670
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 47/79 (59%)
Query: 3 TNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 62
++GK +L T+G+N + + + +N + NDI + TYG+EAA I+ EV VF
Sbjct: 1517 SSGKRILTTEGVNFKAMWEQDDFISVNAITSNDIASVLRTYGVEAARNTIVNEVYRVFDT 1576
Query: 63 YGIEVDPRHLSLVADYMTH 81
YGI V RHL L+AD MT
Sbjct: 1577 YGISVSSRHLDLIADMMTR 1595
>gi|366994298|ref|XP_003676913.1| hypothetical protein NCAS_0F00730 [Naumovozyma castellii CBS 4309]
gi|342302781|emb|CCC70557.1| hypothetical protein NCAS_0F00730 [Naumovozyma castellii CBS 4309]
Length = 1674
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 47/78 (60%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
NGK +L T+G+N + +D++ + ND+ + TYG+EAA I+ E+ NVF+ Y
Sbjct: 1522 NGKRVLVTEGVNFEAMWDQEAFIDVDGITSNDVASVLKTYGVEAARNTIVNEINNVFSRY 1581
Query: 64 GIEVDPRHLSLVADYMTH 81
I V RHL L+AD MT
Sbjct: 1582 AISVSFRHLDLIADMMTR 1599
>gi|172215|gb|AAA34890.1| RNA polymerase A(I) large subunit [Saccharomyces cerevisiae]
Length = 1664
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 47/78 (60%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
NGK +L T+G+N + +D++ + ND+ + TYG+EAA I+ E+ NVF+ Y
Sbjct: 1514 NGKRVLVTEGVNFQAMWDQEAFIDVDGITSNDVAAVLKTYGVEAARNTIVNEINNVFSRY 1573
Query: 64 GIEVDPRHLSLVADYMTH 81
I V RHL L+AD MT
Sbjct: 1574 AISVSFRHLDLIADMMTR 1591
>gi|242088685|ref|XP_002440175.1| hypothetical protein SORBIDRAFT_09g027230 [Sorghum bicolor]
gi|241945460|gb|EES18605.1| hypothetical protein SORBIDRAFT_09g027230 [Sorghum bicolor]
Length = 311
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 46/72 (63%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 68
++T G+N + + ++ + NDIH + TYG+EAA II EV VF YGI+VD
Sbjct: 161 IQTAGVNFEVVWNLNEYISVHDITSNDIHAILKTYGVEAARNTIINEVSGVFKPYGIDVD 220
Query: 69 PRHLSLVADYMT 80
RHLS++AD+MT
Sbjct: 221 MRHLSMIADFMT 232
>gi|259149818|emb|CAY86622.1| Rpa190p [Saccharomyces cerevisiae EC1118]
Length = 1664
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 47/78 (60%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
NGK +L T+G+N + +D++ + ND+ + TYG+EAA I+ E+ NVF+ Y
Sbjct: 1514 NGKRVLVTEGVNFQAMWDQEAFIDVDGITSNDVAAVLKTYGVEAARNTIVNEINNVFSRY 1573
Query: 64 GIEVDPRHLSLVADYMTH 81
I V RHL L+AD MT
Sbjct: 1574 AISVSFRHLDLIADMMTR 1591
>gi|342887287|gb|EGU86828.1| hypothetical protein FOXB_02655 [Fusarium oxysporum Fo5176]
Length = 1676
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 52/81 (64%)
Query: 1 METNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 60
+E ++ T G+N+ + +Y +D N++ NDI + + YG+EAA + I++E+ VF
Sbjct: 1518 VEEKDTKVIHTAGVNLQAMQRYSDFIDPNRIQTNDIAAVLAVYGVEAARQNIVQELAGVF 1577
Query: 61 AVYGIEVDPRHLSLVADYMTH 81
+GI+VD RHL+L+ D+MT
Sbjct: 1578 GSHGIKVDNRHLNLIGDHMTR 1598
>gi|398366307|ref|NP_014986.3| Rpa190p [Saccharomyces cerevisiae S288c]
gi|2507346|sp|P10964.2|RPA1_YEAST RecName: Full=DNA-directed RNA polymerase I subunit RPA190; AltName:
Full=DNA-directed RNA polymerase I 190 kDa polypeptide;
Short=A190; AltName: Full=DNA-directed RNA polymerase I
largest subunit
gi|1199844|emb|CAA65029.1| O6276 [Saccharomyces cerevisiae]
gi|1420741|emb|CAA99665.1| RPA190 [Saccharomyces cerevisiae]
gi|151945418|gb|EDN63661.1| RNA polymerase A [Saccharomyces cerevisiae YJM789]
gi|256272592|gb|EEU07571.1| Rpa190p [Saccharomyces cerevisiae JAY291]
gi|285815209|tpg|DAA11102.1| TPA: Rpa190p [Saccharomyces cerevisiae S288c]
gi|392296668|gb|EIW07770.1| Rpa190p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 1664
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 47/78 (60%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
NGK +L T+G+N + +D++ + ND+ + TYG+EAA I+ E+ NVF+ Y
Sbjct: 1514 NGKRVLVTEGVNFQAMWDQEAFIDVDGITSNDVAAVLKTYGVEAARNTIVNEINNVFSRY 1573
Query: 64 GIEVDPRHLSLVADYMTH 81
I V RHL L+AD MT
Sbjct: 1574 AISVSFRHLDLIADMMTR 1591
>gi|190407636|gb|EDV10903.1| RNA polymerase I subunit [Saccharomyces cerevisiae RM11-1a]
Length = 1664
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 47/78 (60%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
NGK +L T+G+N + +D++ + ND+ + TYG+EAA I+ E+ NVF+ Y
Sbjct: 1514 NGKRVLVTEGVNFQAMWDQEAFIDVDGITSNDVAAVLKTYGVEAARNTIVNEINNVFSRY 1573
Query: 64 GIEVDPRHLSLVADYMTH 81
I V RHL L+AD MT
Sbjct: 1574 AISVSFRHLDLIADMMTR 1591
>gi|169763190|ref|XP_001727495.1| DNA-directed RNA polymerase i [Aspergillus oryzae RIB40]
gi|238489071|ref|XP_002375773.1| DNA-directed RNA polymerase I subunit (Rpa190), putative [Aspergillus
flavus NRRL3357]
gi|83770523|dbj|BAE60656.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220698161|gb|EED54501.1| DNA-directed RNA polymerase I subunit (Rpa190), putative [Aspergillus
flavus NRRL3357]
gi|391869753|gb|EIT78948.1| RNA polymerase I, large subunit [Aspergillus oryzae 3.042]
Length = 1673
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 47/72 (65%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
TDG+N+ + Y+ ++ + LY N IH+M + YG+EAA I+RE+ VF + I VD R
Sbjct: 1532 TDGVNLLAMRDYQDIIQPHSLYTNSIHHMLNLYGVEAARASIVREMTEVFEGHSISVDNR 1591
Query: 71 HLSLVADYMTHS 82
HL+L+ D MT S
Sbjct: 1592 HLNLIGDVMTQS 1603
>gi|349581488|dbj|GAA26646.1| K7_Rpa190p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 1664
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 47/78 (60%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
NGK +L T+G+N + +D++ + ND+ + TYG+EAA I+ E+ NVF+ Y
Sbjct: 1514 NGKRVLVTEGVNFQAMWDQEAFIDVDGITSNDVAAVLKTYGVEAARNTIVNEINNVFSRY 1573
Query: 64 GIEVDPRHLSLVADYMTH 81
I V RHL L+AD MT
Sbjct: 1574 AISVSFRHLDLIADMMTR 1591
>gi|322695488|gb|EFY87295.1| DNA-directed RNA polymerase I subunit RPA1 [Metarhizium acridum CQMa
102]
Length = 1673
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 45/69 (65%)
Query: 13 GINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHL 72
G N+ I +Y +D +++ NDI + S YG+EA I+RE+ VF +GI+VD RHL
Sbjct: 1527 GANIRAIQKYSDYIDPDRIQTNDIAAVLSMYGVEACRSNIVRELAGVFGSHGIKVDNRHL 1586
Query: 73 SLVADYMTH 81
+L+ADYMT
Sbjct: 1587 NLIADYMTR 1595
>gi|444320219|ref|XP_004180766.1| hypothetical protein TBLA_0E01930 [Tetrapisispora blattae CBS 6284]
gi|387513809|emb|CCH61247.1| hypothetical protein TBLA_0E01930 [Tetrapisispora blattae CBS 6284]
Length = 1659
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 5/121 (4%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
NG L T+G+N + +D++K+ ND+ + TYG+EAA I+ E+ VF+ Y
Sbjct: 1509 NGDRSLITEGVNFQAMWDQDTFIDVDKITSNDVSAVLRTYGVEAARNTIVNEIDRVFSTY 1568
Query: 64 GIEVDPRHLSLVADYMTHSEFDLI-----IMVSKSWMLDEVKSTTARSVTPACEPNSHHD 118
I V RHL L+AD MT L + S S ++ TT + +T A N H +
Sbjct: 1569 AISVSSRHLDLIADMMTRQGTYLAFNRQGMETSTSSLMKMSYETTCQFLTKAVLDNEHEE 1628
Query: 119 V 119
+
Sbjct: 1629 L 1629
>gi|387594502|gb|EIJ89526.1| RNA polymerase 2 [Nematocida parisii ERTm3]
Length = 1379
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 40/57 (70%)
Query: 25 LLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
L+D+ + N I M ST GIEAA IIRE+ VF VYGI +D RHLSL+ADYMTH
Sbjct: 1253 LMDVTTVRSNSIWEMFSTLGIEAARSSIIREIAAVFEVYGITIDYRHLSLIADYMTH 1309
>gi|365989414|ref|XP_003671537.1| hypothetical protein NDAI_0H01200 [Naumovozyma dairenensis CBS 421]
gi|343770310|emb|CCD26294.1| hypothetical protein NDAI_0H01200 [Naumovozyma dairenensis CBS 421]
Length = 1669
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 47/78 (60%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
NGK +L T+G+N + +D++ + ND+ + TYG+EAA I+ E+ NVF+ Y
Sbjct: 1519 NGKRVLVTEGVNFEAMWDQEAFIDVDGITSNDVASVLKTYGVEAARNTIVNEINNVFSRY 1578
Query: 64 GIEVDPRHLSLVADYMTH 81
I V RHL L+AD MT
Sbjct: 1579 AISVSYRHLDLIADMMTR 1596
>gi|387596656|gb|EIJ94277.1| RNA polymerase 2 [Nematocida parisii ERTm1]
Length = 1428
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 40/57 (70%)
Query: 25 LLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
L+D+ + N I M ST GIEAA IIRE+ VF VYGI +D RHLSL+ADYMTH
Sbjct: 1302 LMDVTTVRSNSIWEMFSTLGIEAARSSIIREIAAVFEVYGITIDYRHLSLIADYMTH 1358
>gi|295671524|ref|XP_002796309.1| DNA-directed RNA polymerase I subunit RPA1 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226284442|gb|EEH40008.1| DNA-directed RNA polymerase I subunit RPA1 [Paracoccidioides sp.
'lutzii' Pb01]
Length = 1691
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
N H++ TDG+N+ + +Y+H+++ + LY N I M YG+EAA IIRE+ VF +
Sbjct: 1544 NPAHVI-TDGVNLLAMREYQHIVNPHTLYTNSIADMLVWYGVEAARASIIREMATVFNSH 1602
Query: 64 GIEVDPRHLSLVADYMTHS 82
I VD RHL+L+ D MTH+
Sbjct: 1603 SISVDNRHLNLIGDVMTHA 1621
>gi|225681892|gb|EEH20176.1| DNA-directed RNA polymerase I subunit RPA1 [Paracoccidioides
brasiliensis Pb03]
Length = 1691
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
N H++ TDG+N+ + +Y+H+++ + LY N I M YG+EAA IIRE+ VF +
Sbjct: 1544 NPAHVI-TDGVNLLAMREYQHIVNPHTLYTNSIADMLVWYGVEAARASIIREMATVFDSH 1602
Query: 64 GIEVDPRHLSLVADYMTHS 82
I VD RHL+L+ D MTH+
Sbjct: 1603 SISVDNRHLNLIGDVMTHA 1621
>gi|226289059|gb|EEH44571.1| DNA-directed RNA polymerase I subunit RPA1 [Paracoccidioides
brasiliensis Pb18]
Length = 1691
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
N H++ TDG+N+ + +Y+H+++ + LY N I M YG+EAA IIRE+ VF +
Sbjct: 1544 NPAHVI-TDGVNLLAMREYQHIVNPHTLYTNSIADMLVWYGVEAARASIIREMATVFDSH 1602
Query: 64 GIEVDPRHLSLVADYMTHS 82
I VD RHL+L+ D MTH+
Sbjct: 1603 SISVDNRHLNLIGDVMTHA 1621
>gi|255728119|ref|XP_002548985.1| hypothetical protein CTRG_03281 [Candida tropicalis MYA-3404]
gi|240133301|gb|EER32857.1| hypothetical protein CTRG_03281 [Candida tropicalis MYA-3404]
Length = 845
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
G+ +L T+G+N + +++N + NDI+ + TYG+EAA I+ E+ VF YG
Sbjct: 696 GQRILTTEGVNFKAMWDQEDFINVNGITSNDIYAVLKTYGVEAARNTIVNEIYRVFNTYG 755
Query: 65 IEVDPRHLSLVADYMTH 81
I V RHL L+AD MT
Sbjct: 756 ISVSSRHLDLIADMMTR 772
>gi|449549948|gb|EMD40913.1| hypothetical protein CERSUDRAFT_131304 [Ceriporiopsis subvermispora
B]
Length = 1727
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 51/79 (64%), Gaps = 5/79 (6%)
Query: 7 HLLKTDGINVNYISQYR-----HLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
+ L T+G N+ + ++ L+D ++L NDI+ + YG+EAA I+RE+ VFA
Sbjct: 1565 YTLTTNGSNIPGLWRFACSDDDSLIDEDRLQSNDINAILCAYGVEAARATILREIGGVFA 1624
Query: 62 VYGIEVDPRHLSLVADYMT 80
VY I+VD RHL L+ADYMT
Sbjct: 1625 VYKIDVDIRHLELIADYMT 1643
>gi|294942134|ref|XP_002783393.1| DNA-directed RNA polymerase I largest subunit, putative [Perkinsus
marinus ATCC 50983]
gi|239895848|gb|EER15189.1| DNA-directed RNA polymerase I largest subunit, putative [Perkinsus
marinus ATCC 50983]
Length = 1549
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
K ++T+G+N++ I+ +D +++ NDI + YG+EAA I++EV VF YGI
Sbjct: 1380 KVTIETEGVNLD-IAWGLDGIDHDRIVTNDIGLILDRYGVEAARAAIVQEVLRVFGHYGI 1438
Query: 66 EVDPRHLSLVADYMTH 81
VDPRHL L++DYMTH
Sbjct: 1439 GVDPRHLMLISDYMTH 1454
>gi|294935326|ref|XP_002781387.1| DNA-directed RNA polymerase I largest subunit, putative [Perkinsus
marinus ATCC 50983]
gi|239891968|gb|EER13182.1| DNA-directed RNA polymerase I largest subunit, putative [Perkinsus
marinus ATCC 50983]
Length = 1662
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 68
++T+G+N++ I+ +D +++ NDI + YG+EAA I++EV VF YGI VD
Sbjct: 1457 IETEGVNLD-IAWGLDGIDHDRIVTNDIGLILDRYGVEAARAAIVQEVLRVFGHYGIGVD 1515
Query: 69 PRHLSLVADYMTH 81
PRHL L++DYMTH
Sbjct: 1516 PRHLMLISDYMTH 1528
>gi|294911649|ref|XP_002778030.1| DNA-directed RNA polymerase I largest subunit, putative [Perkinsus
marinus ATCC 50983]
gi|239886151|gb|EER09825.1| DNA-directed RNA polymerase I largest subunit, putative [Perkinsus
marinus ATCC 50983]
Length = 1774
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
K ++T+G+N++ I+ +D +++ NDI + YG+EAA I++EV VF YGI
Sbjct: 1605 KVTIETEGVNLD-IAWGLDGIDHDRIVTNDIGLILDRYGVEAARAAIVQEVLRVFGHYGI 1663
Query: 66 EVDPRHLSLVADYMTH 81
VDPRHL L++DYMTH
Sbjct: 1664 GVDPRHLMLISDYMTH 1679
>gi|343429431|emb|CBQ73004.1| related to DNA-directed RNA polymerase I [Sporisorium reilianum SRZ2]
Length = 1800
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 9 LKTDGINVNYISQYR-HLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
L +GIN + + ++DL+ LY NDI + TYG+EAA I+ E++ +F YGI V
Sbjct: 1650 LTAEGINFRDLWDFGFGVVDLDNLYTNDIGAVLHTYGVEAARAAIVSEMRGIFDTYGIAV 1709
Query: 68 DPRHLSLVADYMTHS 82
PRHL L+ADY T +
Sbjct: 1710 SPRHLFLIADYQTAA 1724
>gi|326475279|gb|EGD99288.1| DNA-directed RNA polymerase I [Trichophyton tonsurans CBS 112818]
Length = 1680
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 49/72 (68%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
T+G+N+ + Y+ ++D + +Y N + +M S YG+EAA I+ EV VF +GI+VD R
Sbjct: 1539 TEGVNLLAMRDYQDIIDPHSIYSNSVSHMLSLYGVEAARATIVSEVGAVFEGHGIKVDNR 1598
Query: 71 HLSLVADYMTHS 82
HL+L+AD MT +
Sbjct: 1599 HLTLIADVMTQT 1610
>gi|121701207|ref|XP_001268868.1| DNA-directed RNA polymerase I subunit (Rpa190), putative [Aspergillus
clavatus NRRL 1]
gi|119397011|gb|EAW07442.1| DNA-directed RNA polymerase I subunit (Rpa190), putative [Aspergillus
clavatus NRRL 1]
Length = 1734
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 48/72 (66%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
T+G+N+ + Y+ ++ + LY N IH+M + YG+EAA I+RE+ +VF + I VD R
Sbjct: 1593 TEGVNLLAMRDYQDIIKPHSLYTNSIHHMLTLYGVEAARASIVREMSDVFEGHSISVDNR 1652
Query: 71 HLSLVADYMTHS 82
HL+L+ D MT S
Sbjct: 1653 HLNLIGDVMTQS 1664
>gi|71015094|ref|XP_758775.1| hypothetical protein UM02628.1 [Ustilago maydis 521]
gi|46098565|gb|EAK83798.1| hypothetical protein UM02628.1 [Ustilago maydis 521]
Length = 1795
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 9 LKTDGINVNYISQYRH-LLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
L +GIN + + ++DL+ LY NDI + TYG+EAA I+ E++ +F YGI V
Sbjct: 1645 LTAEGINFRDLWDFGFGVIDLDNLYTNDIGAVLHTYGVEAARAAIVAEMRGIFDTYGIAV 1704
Query: 68 DPRHLSLVADYMTHS 82
PRHL L+ADY T +
Sbjct: 1705 SPRHLFLIADYQTAA 1719
>gi|326480372|gb|EGE04382.1| DNA-directed RNA polymerase I subunit [Trichophyton equinum CBS
127.97]
Length = 1680
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 49/72 (68%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
T+G+N+ + Y+ ++D + +Y N + +M S YG+EAA I+ EV VF +GI+VD R
Sbjct: 1539 TEGVNLLAMRDYQDIIDPHSIYSNSVSHMLSLYGVEAARATIVSEVGAVFEGHGIKVDNR 1598
Query: 71 HLSLVADYMTHS 82
HL+L+AD MT +
Sbjct: 1599 HLTLIADVMTQT 1610
>gi|294868586|ref|XP_002765594.1| DNA-directed RNA polymerase I largest subunit, putative [Perkinsus
marinus ATCC 50983]
gi|239865673|gb|EEQ98311.1| DNA-directed RNA polymerase I largest subunit, putative [Perkinsus
marinus ATCC 50983]
Length = 1775
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
K ++T+G+N++ I+ +D +++ NDI + YG+EAA I++EV VF YGI
Sbjct: 1606 KVTIETEGVNLD-IAWGLDGIDHDRIVTNDIGLILDRYGVEAARAAIVQEVLRVFGHYGI 1664
Query: 66 EVDPRHLSLVADYMTH 81
VDPRHL L++DYMTH
Sbjct: 1665 GVDPRHLMLISDYMTH 1680
>gi|361125598|gb|EHK97632.1| putative DNA-directed RNA polymerase I subunit rpa1 [Glarea
lozoyensis 74030]
Length = 1558
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 48/75 (64%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+++T G+N+ + Y H+++ N + NDI M + YG+EA II+E+ VF + I V
Sbjct: 1458 VVQTVGVNLKAMQTYPHIINPNTISTNDIAAMLANYGVEACRATIIQELAGVFGGHAISV 1517
Query: 68 DPRHLSLVADYMTHS 82
D RHL+L+AD+MT
Sbjct: 1518 DNRHLNLIADFMTRG 1532
>gi|316997005|dbj|BAJ52630.1| RNA polymerase I largest subunit [Paramecium tetraurelia]
Length = 1029
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
++ T+G+N+N I + ++LN + NDI + + +GIEAA II+E+ VF YG+ V
Sbjct: 884 MIYTEGVNLNKIRNF-DFINLNNIDCNDIVAIMNAFGIEAARNAIIKEILAVFGAYGVAV 942
Query: 68 DPRHLSLVADYMT 80
D RHL L+ADYMT
Sbjct: 943 DYRHLYLIADYMT 955
>gi|145356916|ref|XP_001422669.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582912|gb|ABP00986.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 1663
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 45/73 (61%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 68
++TDGIN L+++N + N + + T+G+EA ++ EV+ VF VYGI VD
Sbjct: 1503 IQTDGINFGAAWANSDLIEVNSMKSNSVWDIMQTFGVEAGRSTLVSEVQAVFGVYGIGVD 1562
Query: 69 PRHLSLVADYMTH 81
RHLSL+ D+MT
Sbjct: 1563 TRHLSLIGDFMTQ 1575
>gi|156839925|ref|XP_001643648.1| hypothetical protein Kpol_1040p3 [Vanderwaltozyma polyspora DSM
70294]
gi|156114268|gb|EDO15790.1| hypothetical protein Kpol_1040p3 [Vanderwaltozyma polyspora DSM
70294]
Length = 1656
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 63/122 (51%), Gaps = 5/122 (4%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
NGK +L T+G+N + + ++ + ND+ + TYG+EAA I+ E+ NVF+ Y
Sbjct: 1506 NGKRVLVTEGVNFQAMWDQEAFIGVDGITSNDVSAVLKTYGVEAARNTIVNEINNVFSRY 1565
Query: 64 GIEVDPRHLSLVADYMTHSEFDLI-----IMVSKSWMLDEVKSTTARSVTPACEPNSHHD 118
I V RHL L+AD MT L + S S ++ TT + +T A N + +
Sbjct: 1566 AISVSFRHLDLIADMMTRQGTYLAFNRQGMETSTSSLMKMSYETTCQFLTKAVLDNENEE 1625
Query: 119 VK 120
+K
Sbjct: 1626 LK 1627
>gi|145529488|ref|XP_001450527.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124418149|emb|CAK83130.1| unnamed protein product [Paramecium tetraurelia]
Length = 1696
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
++ T+G+N+N I + ++LN + NDI + + +GIEAA II+E+ VF YG+ V
Sbjct: 1551 MIYTEGVNLNKIRNF-DFINLNNIDCNDIVAIMNAFGIEAARNAIIKEILAVFGAYGVAV 1609
Query: 68 DPRHLSLVADYMT 80
D RHL L+ADYMT
Sbjct: 1610 DYRHLYLIADYMT 1622
>gi|241949841|ref|XP_002417643.1| DNA-directed RNA polymerase I 190 kda polypeptide largest subunit,
putative [Candida dubliniensis CD36]
gi|223640981|emb|CAX45330.1| DNA-directed RNA polymerase I 190 kda polypeptide largest subunit,
putative [Candida dubliniensis CD36]
Length = 1656
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
GK +L T+G+N + +++N + ND++ + TYG+EAA I+ E+ VF YG
Sbjct: 1508 GKRILTTEGVNFKAMWDQDDFINVNGITSNDVYAVLKTYGVEAARNTIVNEIYRVFDTYG 1567
Query: 65 IEVDPRHLSLVADYMTH 81
I V RHL L+AD MT
Sbjct: 1568 ISVSSRHLDLIADMMTR 1584
>gi|388853445|emb|CCF52844.1| related to DNA-directed RNA polymerase I [Ustilago hordei]
Length = 1798
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 9 LKTDGINVNYISQYRH-LLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
L +GIN + + ++DL+ LY NDI + TYG+EAA I+ E++ +F YGI V
Sbjct: 1648 LTAEGINFRDLWDFGFGVVDLDNLYTNDIGAVLHTYGVEAARAAIVSEMRGIFDTYGIAV 1707
Query: 68 DPRHLSLVADYMTHS 82
PRHL L+ADY T +
Sbjct: 1708 SPRHLFLIADYQTAA 1722
>gi|238878529|gb|EEQ42167.1| DNA-directed RNA polymerase I 190 kDa polypeptide [Candida albicans
WO-1]
Length = 1577
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
GK +L T+G+N + +++N + ND++ + TYG+EAA I+ E+ VF YG
Sbjct: 1429 GKRILTTEGVNFRAMWDQDDFINVNGITSNDVYAVLKTYGVEAARNTIVNEIYRVFDTYG 1488
Query: 65 IEVDPRHLSLVADYMTH 81
I V RHL L+AD MT
Sbjct: 1489 ISVSSRHLDLIADMMTR 1505
>gi|68490869|ref|XP_710761.1| hypothetical protein CaO19.9397 [Candida albicans SC5314]
gi|68490951|ref|XP_710723.1| hypothetical protein CaO19.1839 [Candida albicans SC5314]
gi|46431960|gb|EAK91475.1| hypothetical protein CaO19.1839 [Candida albicans SC5314]
gi|46432002|gb|EAK91513.1| hypothetical protein CaO19.9397 [Candida albicans SC5314]
Length = 1665
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
GK +L T+G+N + +++N + ND++ + TYG+EAA I+ E+ VF YG
Sbjct: 1517 GKRILTTEGVNFRAMWDQDDFINVNGITSNDVYAVLKTYGVEAARNTIVNEIYRVFDTYG 1576
Query: 65 IEVDPRHLSLVADYMTH 81
I V RHL L+AD MT
Sbjct: 1577 ISVSSRHLDLIADMMTR 1593
>gi|443894484|dbj|GAC71832.1| RNA polymerase I, large subunit [Pseudozyma antarctica T-34]
Length = 1797
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 9 LKTDGINVNYISQYRH-LLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
L +GIN + + ++DL+ LY NDI + TYG+EAA I+ E++ +F YGI V
Sbjct: 1647 LTAEGINFRDLWNFGFGVVDLDNLYTNDIGAVLHTYGVEAARAAIVAEMRGIFDTYGIAV 1706
Query: 68 DPRHLSLVADYMTHS 82
PRHL L+ADY T +
Sbjct: 1707 SPRHLFLIADYQTAA 1721
>gi|149247078|ref|XP_001527964.1| DNA-directed RNA polymerase I 190 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
gi|146447918|gb|EDK42306.1| DNA-directed RNA polymerase I 190 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
Length = 1668
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 45/77 (58%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
GK +L T+G+N + +++N + NDI + TYG+EAA I+ E+ VF YG
Sbjct: 1518 GKRVLTTEGVNFRAMWDQDDFINVNAITSNDIASVLRTYGVEAARNTIVNEIYRVFDTYG 1577
Query: 65 IEVDPRHLSLVADYMTH 81
I V P HL L+AD MT
Sbjct: 1578 ISVSPHHLELIADMMTR 1594
>gi|156047829|ref|XP_001589882.1| hypothetical protein SS1G_09604 [Sclerotinia sclerotiorum 1980]
gi|154693999|gb|EDN93737.1| hypothetical protein SS1G_09604 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1705
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
T+G+N+ + Y ++ N + NDI M YG+EA I++E+ +VFA + I+VD R
Sbjct: 1554 TEGVNLKAMQNYAAFINPNTISTNDIAAMLENYGVEACRSTIVQELHSVFAGHAIQVDMR 1613
Query: 71 HLSLVADYMTHS 82
HL+L+ADYMT
Sbjct: 1614 HLNLIADYMTRG 1625
>gi|322705032|gb|EFY96621.1| DNA-directed RNA polymerase I subunit RPA1 [Metarhizium anisopliae
ARSEF 23]
Length = 1659
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 45/69 (65%)
Query: 13 GINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHL 72
G N+ I +Y +D +++ NDI + S YG+EA I+RE+ VF +GI+VD RHL
Sbjct: 1517 GANIGAIQKYSDEIDPDRIQTNDIVAVLSMYGVEACRSNIVRELAGVFGSHGIKVDNRHL 1576
Query: 73 SLVADYMTH 81
+L+ADYMT
Sbjct: 1577 NLIADYMTR 1585
>gi|154296469|ref|XP_001548665.1| hypothetical protein BC1G_12809 [Botryotinia fuckeliana B05.10]
Length = 1774
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 45/72 (62%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
T+G+N+ + Y ++ NK+ NDI M YG+EA I++E+ +VF + I VD R
Sbjct: 1538 TEGVNLKAMQNYAAFINPNKISTNDIAAMLENYGVEACRSTIVQELHSVFDGHAIAVDMR 1597
Query: 71 HLSLVADYMTHS 82
HL L+ADYMT S
Sbjct: 1598 HLKLIADYMTQS 1609
>gi|449017030|dbj|BAM80432.1| RNA polymerase I largest subunit [Cyanidioschyzon merolae strain 10D]
Length = 1607
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 37/78 (47%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 4 NGKHLLKTDGINVNYI-SQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 62
+G L+T+G N+ + LDL+ L+ N I + S YGIEAA ++RE++ VFA
Sbjct: 1449 DGGIALRTEGSNIRLAWTLSDDELDLDGLFSNHISEVLSVYGIEAARARLVRELQTVFAA 1508
Query: 63 YGIEVDPRHLSLVADYMT 80
YGI VD RHLSL+ADY T
Sbjct: 1509 YGIAVDYRHLSLIADYQT 1526
>gi|443920271|gb|ELU40225.1| RNA polymerase I largest subunit [Rhizoctonia solani AG-1 IA]
Length = 2541
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 53/76 (69%), Gaps = 2/76 (2%)
Query: 6 KHLLKTDGINVNYI-SQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
KHL +T G N + I + ++DL+ + NDIH + +YG+E A I++E+++VF+VY
Sbjct: 2396 KHL-ETTGTNFSGIWAAASDVVDLDNITSNDIHAILCSYGVEMARTAILKEIESVFSVYK 2454
Query: 65 IEVDPRHLSLVADYMT 80
I VD RHL+L+ADYMT
Sbjct: 2455 IAVDFRHLTLIADYMT 2470
>gi|118363248|ref|XP_001014750.1| RNA polymerase Rpb1, domain 2 family protein [Tetrahymena
thermophila]
gi|89296616|gb|EAR94604.1| RNA polymerase Rpb1, domain 2 family protein [Tetrahymena thermophila
SB210]
Length = 1727
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 68
++T+G+N I + H D N + NDI + YGIEAA I++E+ VF VYG+ VD
Sbjct: 1587 IQTEGVNFKQIWKMDHF-DSNTIDSNDIAALNKCYGIEAARNAIVKEIVTVFGVYGVVVD 1645
Query: 69 PRHLSLVADYMTHSEFDLIIMVSKSWM 95
RHL L+ADY+T S + +++ WM
Sbjct: 1646 YRHLYLIADYLTFS--GEMKAMNRVWM 1670
>gi|367004368|ref|XP_003686917.1| hypothetical protein TPHA_0H02800 [Tetrapisispora phaffii CBS 4417]
gi|357525219|emb|CCE64483.1| hypothetical protein TPHA_0H02800 [Tetrapisispora phaffii CBS 4417]
Length = 1648
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
NGK +L T+G+N + + ++++ + ND+ + TYG+EAA I+ E+ NVF+ Y
Sbjct: 1498 NGKRVLVTEGVNFQAMWEQNDFVNVDGITSNDVSSVLKTYGVEAARNTIVNEINNVFSRY 1557
Query: 64 GIEVDPRHLSLVADYMTH 81
I V RHL L+AD MT
Sbjct: 1558 AISVSFRHLDLIADMMTR 1575
>gi|302503366|ref|XP_003013643.1| hypothetical protein ARB_00090 [Arthroderma benhamiae CBS 112371]
gi|291177208|gb|EFE33003.1| hypothetical protein ARB_00090 [Arthroderma benhamiae CBS 112371]
Length = 1642
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 48/72 (66%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
T+G+N+ + Y+ ++D + +Y N + +M YG+EAA I+ EV VF +GI+VD R
Sbjct: 1501 TEGVNLLAMRDYQDIIDPHSIYSNSVSHMLGLYGVEAARATIVSEVGTVFEGHGIKVDNR 1560
Query: 71 HLSLVADYMTHS 82
HL+L+AD MT +
Sbjct: 1561 HLTLIADVMTQT 1572
>gi|150866448|ref|XP_001386054.2| alpha subunit of RNA polymerase I [Scheffersomyces stipitis CBS 6054]
gi|149387704|gb|ABN68025.2| alpha subunit of RNA polymerase I [Scheffersomyces stipitis CBS 6054]
Length = 1644
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 46/80 (57%)
Query: 2 ETNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
+ +GK +L T+G+N + +D+N + ND+ + TYG+EAA I+ E+ VF
Sbjct: 1493 DASGKRILTTEGVNFRAMWDQDDFIDVNNITSNDVAAVLRTYGVEAARNTIVNEIYRVFD 1552
Query: 62 VYGIEVDPRHLSLVADYMTH 81
YGI V RHL L+ D MT
Sbjct: 1553 TYGISVSSRHLDLLGDMMTR 1572
>gi|299747435|ref|XP_002911169.1| RNA polymerase I largest subunit [Coprinopsis cinerea okayama7#130]
gi|298407517|gb|EFI27675.1| RNA polymerase I largest subunit [Coprinopsis cinerea okayama7#130]
Length = 1726
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 50/77 (64%), Gaps = 5/77 (6%)
Query: 9 LKTDGINVNYISQY-----RHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
L T+G N+ + ++ +L+ +++Y NDI+ + TYG+E A I++EV VFA Y
Sbjct: 1579 LTTNGSNLRGMWEFASGSDESILEDDEIYSNDIYALLKTYGVEMARAAILKEVGGVFAAY 1638
Query: 64 GIEVDPRHLSLVADYMT 80
I+VD RHL L+ADYMT
Sbjct: 1639 SIQVDRRHLELIADYMT 1655
>gi|115492103|ref|XP_001210679.1| hypothetical protein ATEG_00593 [Aspergillus terreus NIH2624]
gi|114197539|gb|EAU39239.1| hypothetical protein ATEG_00593 [Aspergillus terreus NIH2624]
Length = 1691
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 47/72 (65%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
T+G+N+ + Y+ ++ + LY N IH+M YG+EAA I+RE+ +VF + I VD R
Sbjct: 1550 TEGVNLLAMRDYQDIIKPHSLYTNSIHHMLQFYGVEAARASIVREMSDVFEGHSISVDNR 1609
Query: 71 HLSLVADYMTHS 82
HL+L+ D MT S
Sbjct: 1610 HLNLIGDVMTQS 1621
>gi|46116898|ref|XP_384467.1| hypothetical protein FG04291.1 [Gibberella zeae PH-1]
Length = 1694
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 49/76 (64%)
Query: 7 HLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIE 66
++ T+G+N+ + QY ++ N + NDI + YG+EAA + I+ E+ VF +GI+
Sbjct: 1542 RVIHTEGVNLQAMQQYSDFINPNNIQTNDIAAVLEVYGVEAARQNIVNELDGVFGSHGIK 1601
Query: 67 VDPRHLSLVADYMTHS 82
VD RHL+L+ D+MT +
Sbjct: 1602 VDNRHLNLIGDHMTRN 1617
>gi|408395819|gb|EKJ74992.1| hypothetical protein FPSE_04812 [Fusarium pseudograminearum CS3096]
Length = 1694
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 49/76 (64%)
Query: 7 HLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIE 66
++ T+G+N+ + QY ++ N + NDI + YG+EAA + I+ E+ VF +GI+
Sbjct: 1542 RVIHTEGVNLQAMQQYSDFINPNNIQTNDIAAVLEVYGVEAARQNIVNELDGVFGSHGIK 1601
Query: 67 VDPRHLSLVADYMTHS 82
VD RHL+L+ D+MT +
Sbjct: 1602 VDNRHLNLIGDHMTRN 1617
>gi|403215737|emb|CCK70236.1| hypothetical protein KNAG_0D04970 [Kazachstania naganishii CBS 8797]
Length = 1671
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 45/78 (57%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
NGK +L T+G+N + +D++ + ND+ + YG+EAA I+ E+ NVF Y
Sbjct: 1518 NGKRVLVTEGVNFQAMWDQEDFIDVDGITSNDVSAVLKVYGVEAARNTIVNEISNVFGRY 1577
Query: 64 GIEVDPRHLSLVADYMTH 81
I V RHL L+AD MT
Sbjct: 1578 AISVSFRHLDLIADMMTR 1595
>gi|428672959|gb|EKX73872.1| DNA-directed RNA polymerase I, putative [Babesia equi]
Length = 1850
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 7 HLLKTDGINVNYISQYRH-LLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
+ L DG N+ + + ++D NK+ +NDI + YG+EAA I+ E+ VF+VYGI
Sbjct: 1689 YTLHCDGTNLKRVYLLKEGIIDFNKIKINDISTVLHYYGVEAARACIVSELNKVFSVYGI 1748
Query: 66 EVDPRHLSLVADYMTH 81
+V+ RHL+L+AD+MT
Sbjct: 1749 DVNYRHLTLIADFMTQ 1764
>gi|406859187|gb|EKD12256.1| RNA polymerase Rpb1 [Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 1707
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 3 TNGKHL----LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKN 58
NGK + + T G+N+ + +Y+ ++ N + NDI + + YG+EA I++E+
Sbjct: 1545 ANGKKIRVPVVHTTGVNLQAMHEYQQFINPNTISTNDIAAILTIYGVEACRAAIVQELSG 1604
Query: 59 VFAVYGIEVDPRHLSLVADYMTHS 82
VF +GI VD RHL+L+AD+MT
Sbjct: 1605 VFGGHGISVDHRHLNLIADFMTRG 1628
>gi|340514005|gb|EGR44276.1| predicted protein [Trichoderma reesei QM6a]
Length = 1666
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 52/81 (64%)
Query: 2 ETNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
+ G+ ++ T G+N+ + +Y +D +++ NDI + YG+EA I++E+ VF
Sbjct: 1509 QEKGQTVINTTGVNLRAMQRYSDFIDPHRIQTNDIAAVLDVYGVEACRGNIVQELSGVFG 1568
Query: 62 VYGIEVDPRHLSLVADYMTHS 82
+GI+VD RHL+L+AD+MT +
Sbjct: 1569 GHGIKVDNRHLNLIADHMTRN 1589
>gi|302666622|ref|XP_003024908.1| hypothetical protein TRV_00913 [Trichophyton verrucosum HKI 0517]
gi|291188985|gb|EFE44297.1| hypothetical protein TRV_00913 [Trichophyton verrucosum HKI 0517]
Length = 1642
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 48/72 (66%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
T+G+N+ + Y+ ++D + +Y N + +M YG+EAA I+ EV VF +GI+VD R
Sbjct: 1501 TEGVNLLAMRDYQDIIDPHSIYSNSVSHMLGLYGVEAARATIVSEVGAVFEGHGIKVDNR 1560
Query: 71 HLSLVADYMTHS 82
HL+L+AD MT +
Sbjct: 1561 HLTLIADVMTQT 1572
>gi|327294315|ref|XP_003231853.1| DNA-directed RNA polymerase I [Trichophyton rubrum CBS 118892]
gi|326465798|gb|EGD91251.1| DNA-directed RNA polymerase I [Trichophyton rubrum CBS 118892]
Length = 1681
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 48/72 (66%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
T+G+N+ + Y+ ++D + +Y N + +M YG+EAA I+ EV VF +GI+VD R
Sbjct: 1540 TEGVNLLAMRDYQDIIDPHSIYSNSVSHMLGLYGVEAARATIVSEVGAVFEGHGIKVDNR 1599
Query: 71 HLSLVADYMTHS 82
HL+L+AD MT +
Sbjct: 1600 HLTLIADVMTQT 1611
>gi|296822244|ref|XP_002850253.1| RNA polymerase I largest subunit [Arthroderma otae CBS 113480]
gi|238837807|gb|EEQ27469.1| RNA polymerase I largest subunit [Arthroderma otae CBS 113480]
Length = 1680
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 52/77 (67%), Gaps = 1/77 (1%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
+H+L T+G+N+ + Y+ ++D + +Y N + +M YG+EAA I+ EV VF +GI
Sbjct: 1535 EHVL-TEGVNLIAMRDYQDIIDPHSIYSNSVSHMLGLYGVEAARATIVNEVGAVFDGHGI 1593
Query: 66 EVDPRHLSLVADYMTHS 82
+VD RHL+L+AD MT +
Sbjct: 1594 KVDNRHLTLIADVMTQT 1610
>gi|412985554|emb|CCO19000.1| predicted protein [Bathycoccus prasinos]
Length = 1879
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/78 (38%), Positives = 49/78 (62%)
Query: 2 ETNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
E +G ++ DG++ + L+D+N++ ND+ + T G+EAA R ++ E+ VF
Sbjct: 1670 ELDGTLAVQCDGVSFDAAFANEDLVDVNRIKANDVWQVRLTLGVEAARRTLVDEISGVFG 1729
Query: 62 VYGIEVDPRHLSLVADYM 79
YGI VD RHLSL++D+M
Sbjct: 1730 AYGIGVDARHLSLISDFM 1747
>gi|367017944|ref|XP_003683470.1| hypothetical protein TDEL_0H04000 [Torulaspora delbrueckii]
gi|359751134|emb|CCE94259.1| hypothetical protein TDEL_0H04000 [Torulaspora delbrueckii]
Length = 1665
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 46/78 (58%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
N K +L T+G+N + +D++ + ND+ + TYG+EAA I+ E+ NVF+ Y
Sbjct: 1514 NNKRMLVTEGVNFQAMWDQEAFIDVDAITSNDVASVLRTYGVEAARNTIVNEINNVFSRY 1573
Query: 64 GIEVDPRHLSLVADYMTH 81
I V RHL L+AD MT
Sbjct: 1574 AISVSFRHLDLIADMMTR 1591
>gi|401623429|gb|EJS41527.1| rpa190p [Saccharomyces arboricola H-6]
Length = 1667
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
GK +L T+G+N + +D++ + ND+ + TYG+EAA I+ E+ NVF+ Y
Sbjct: 1518 GKRVLVTEGVNFQAMWDQEAFIDVDGITSNDVAAVLRTYGVEAARNTIVNEINNVFSRYA 1577
Query: 65 IEVDPRHLSLVADYMTH 81
I V RHL L+AD MT
Sbjct: 1578 ISVSFRHLDLIADMMTR 1594
>gi|256073012|ref|XP_002572827.1| DNA-directed RNA polymerase I [Schistosoma mansoni]
Length = 1784
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 24 HLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMT 80
+ DL++LY N+I M TYGIEAA + REV VF YGI V+ RHLSL++DY+T
Sbjct: 1655 QVFDLSQLYTNNITVMNETYGIEAARAALQREVSGVFGHYGIHVNSRHLSLISDYLT 1711
>gi|20978713|sp|Q976A6.2|RPOA2_SULTO RecName: Full=DNA-directed RNA polymerase subunit A''
gi|342306128|dbj|BAK54217.1| DNA-directed RNA polymerase subunit A'' [Sulfolobus tokodaii str.
7]
Length = 392
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 61/101 (60%), Gaps = 3/101 (2%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
++++ TDG N+ + + + D+NK+ N+IH +A T+GIEAA I RE+K V G+
Sbjct: 245 EYVIITDGSNLEGVIGIKGV-DVNKIQTNNIHEIADTFGIEAAREAIAREIKKVLEEQGL 303
Query: 66 EVDPRHLSLVADYMTHSEFDLIIMVSKSWMLDEVKSTTARS 106
+VD RH+ LVAD MT + ++ + + + E S AR+
Sbjct: 304 DVDMRHILLVADIMTRT--GVVRQIGRHGVTGEKSSVLARA 342
>gi|358370847|dbj|GAA87457.1| DNA-directed RNA polymerase I subunit [Aspergillus kawachii IFO 4308]
Length = 1796
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 47/72 (65%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
TDG+N+ + Y+ ++ + LY N IH M + YG+EAA I++E+ +VF + I VD R
Sbjct: 1655 TDGVNLLAMRDYQDIIKPHSLYTNSIHDMLNLYGVEAARASIVKEMSDVFQGHSISVDNR 1714
Query: 71 HLSLVADYMTHS 82
HL+L+ D MT S
Sbjct: 1715 HLNLIGDVMTQS 1726
>gi|15920464|ref|NP_376133.1| DNA-directed RNA polymerase subunit A'' [Sulfolobus tokodaii str.
7]
Length = 398
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 61/101 (60%), Gaps = 3/101 (2%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
++++ TDG N+ + + + D+NK+ N+IH +A T+GIEAA I RE+K V G+
Sbjct: 251 EYVIITDGSNLEGVIGIKGV-DVNKIQTNNIHEIADTFGIEAAREAIAREIKKVLEEQGL 309
Query: 66 EVDPRHLSLVADYMTHSEFDLIIMVSKSWMLDEVKSTTARS 106
+VD RH+ LVAD MT + ++ + + + E S AR+
Sbjct: 310 DVDMRHILLVADIMTRT--GVVRQIGRHGVTGEKSSVLARA 348
>gi|145240347|ref|XP_001392820.1| DNA-directed RNA polymerase i [Aspergillus niger CBS 513.88]
gi|134077337|emb|CAK39952.1| unnamed protein product [Aspergillus niger]
Length = 1680
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 47/72 (65%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
TDG+N+ + Y+ ++ + LY N IH M + YG+EAA I++E+ +VF + I VD R
Sbjct: 1539 TDGVNLLAMRDYQDIIKPHSLYTNSIHDMLNLYGVEAARASIVKEMSDVFQGHSISVDNR 1598
Query: 71 HLSLVADYMTHS 82
HL+L+ D MT S
Sbjct: 1599 HLNLIGDVMTQS 1610
>gi|350629866|gb|EHA18239.1| DNA-directed RNA polymerase [Aspergillus niger ATCC 1015]
Length = 1684
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 47/72 (65%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
TDG+N+ + Y+ ++ + LY N IH M + YG+EAA I++E+ +VF + I VD R
Sbjct: 1543 TDGVNLLAMRDYQDIIKPHSLYTNSIHDMLNLYGVEAARASIVKEMSDVFQGHSISVDNR 1602
Query: 71 HLSLVADYMTHS 82
HL+L+ D MT S
Sbjct: 1603 HLNLIGDVMTQS 1614
>gi|170090758|ref|XP_001876601.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648094|gb|EDR12337.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 1711
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Query: 2 ETNGKHLLKTDGINVN-----YISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREV 56
E G L T+G N +S +L+ +++Y NDI+ + TYG+E A I+RE+
Sbjct: 1557 EKKGDITLTTNGSNFRGMWEFAVSSDESILEDDEIYSNDIYAILKTYGVEMARAAILREM 1616
Query: 57 KNVFAVYGIEVDPRHLSLVADYMT 80
+F Y I+VD RHL L+ADYMT
Sbjct: 1617 GGIFGAYNIQVDRRHLELIADYMT 1640
>gi|315056319|ref|XP_003177534.1| DNA-directed RNA polymerase I subunit RPA1 [Arthroderma gypseum CBS
118893]
gi|311339380|gb|EFQ98582.1| DNA-directed RNA polymerase I subunit RPA1 [Arthroderma gypseum CBS
118893]
Length = 1679
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 49/72 (68%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
T+G+N+ + Y+ +++ + +Y N + +M S YG+EAA I+ EV VF +GI+VD R
Sbjct: 1538 TEGVNLLAMRDYQDIINPHSIYSNSVSHMLSLYGVEAARATIVSEVGAVFEGHGIKVDNR 1597
Query: 71 HLSLVADYMTHS 82
HL+L+AD MT +
Sbjct: 1598 HLTLIADVMTQT 1609
>gi|347831222|emb|CCD46919.1| similar to DNA-directed RNA polymerase I subunit [Botryotinia
fuckeliana]
Length = 1703
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
T+G+N+ + Y ++ NK+ NDI M YG+EA I++E+ +VF + I VD R
Sbjct: 1552 TEGVNLKAMQNYAAFINPNKISTNDIAAMLENYGVEACRSTIVQELHSVFDGHAIAVDMR 1611
Query: 71 HLSLVADYMTHS 82
HL+L+ADYMT
Sbjct: 1612 HLNLIADYMTRG 1623
>gi|70996010|ref|XP_752760.1| DNA-directed RNA polymerase I subunit (Rpa190) [Aspergillus fumigatus
Af293]
gi|66850395|gb|EAL90722.1| DNA-directed RNA polymerase I subunit (Rpa190), putative [Aspergillus
fumigatus Af293]
Length = 1680
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 47/72 (65%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
T+G+N+ + Y+ ++ + +Y N IH+M YG+EAA I+RE+ +VF + I VD R
Sbjct: 1539 TEGVNLLAMRDYQDIIKPHSIYTNSIHHMLMLYGVEAARASIVREMSDVFQGHSISVDNR 1598
Query: 71 HLSLVADYMTHS 82
HL+L+ D MT S
Sbjct: 1599 HLNLIGDVMTQS 1610
>gi|159131514|gb|EDP56627.1| DNA-directed RNA polymerase I subunit (Rpa190), putative [Aspergillus
fumigatus A1163]
Length = 1680
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 47/72 (65%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
T+G+N+ + Y+ ++ + +Y N IH+M YG+EAA I+RE+ +VF + I VD R
Sbjct: 1539 TEGVNLLAMRDYQDIIKPHSIYTNSIHHMLMLYGVEAARASIVREMSDVFQGHSISVDNR 1598
Query: 71 HLSLVADYMTHS 82
HL+L+ D MT S
Sbjct: 1599 HLNLIGDVMTQS 1610
>gi|44889981|emb|CAF32099.1| DNA-directed RNA polymerase i, putative [Aspergillus fumigatus]
Length = 1692
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 47/72 (65%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
T+G+N+ + Y+ ++ + +Y N IH+M YG+EAA I+RE+ +VF + I VD R
Sbjct: 1551 TEGVNLLAMRDYQDIIKPHSIYTNSIHHMLMLYGVEAARASIVREMSDVFQGHSISVDNR 1610
Query: 71 HLSLVADYMTHS 82
HL+L+ D MT S
Sbjct: 1611 HLNLIGDVMTQS 1622
>gi|119495150|ref|XP_001264366.1| DNA-directed RNA polymerase I subunit (Rpa190), putative [Neosartorya
fischeri NRRL 181]
gi|119412528|gb|EAW22469.1| DNA-directed RNA polymerase I subunit (Rpa190), putative [Neosartorya
fischeri NRRL 181]
Length = 1681
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 47/72 (65%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
T+G+N+ + Y+ ++ + +Y N IH+M YG+EAA I+RE+ +VF + I VD R
Sbjct: 1540 TEGVNLLAMRDYQDIIKPHSIYTNSIHHMLMLYGVEAARASIVREMSDVFQGHSISVDNR 1599
Query: 71 HLSLVADYMTHS 82
HL+L+ D MT S
Sbjct: 1600 HLNLIGDVMTQS 1611
>gi|403221173|dbj|BAM39306.1| DNA-directed RNA polymerase [Theileria orientalis strain Shintoku]
Length = 1960
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 9 LKTDGINVNYISQYRH-LLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
L DG N+ + R ++D N + +ND+ + YGIEAA I+ E+ VF+VYGI V
Sbjct: 1799 LHCDGTNLTRLFMIREDIVDFNVVKLNDVATVLKYYGIEAARSCIVSELNKVFSVYGITV 1858
Query: 68 DPRHLSLVADYMTH 81
D RHL+L+AD+MT
Sbjct: 1859 DYRHLTLLADFMTQ 1872
>gi|440635899|gb|ELR05818.1| hypothetical protein GMDG_01895 [Geomyces destructans 20631-21]
Length = 1708
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%)
Query: 13 GINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHL 72
G+N+ + Y ++ NK+ NDI M YG+EA II+E+ VF +GI VD RHL
Sbjct: 1559 GVNLKAMQMYSDYINPNKISTNDIAAMLEHYGVEACRATIIQELSGVFGGHGIAVDNRHL 1618
Query: 73 SLVADYMTHS 82
+L+AD+MT
Sbjct: 1619 NLIADFMTRG 1628
>gi|160331315|ref|XP_001712365.1| rpa1 [Hemiselmis andersenii]
gi|159765813|gb|ABW98040.1| rpa1 [Hemiselmis andersenii]
Length = 1496
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 49/75 (65%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
K ++ TDG+N + + L+DL K++ NDI+ + + YGIEAA ++RE+ +F + I
Sbjct: 1353 KKIIHTDGVNFFFFWKNGDLVDLKKIFTNDIYALMNRYGIEAARETLVRELNTIFQIQSI 1412
Query: 66 EVDPRHLSLVADYMT 80
++ HL L++DY+T
Sbjct: 1413 LINYHHLDLISDYIT 1427
>gi|344302025|gb|EGW32330.1| DNA-directed RNA polymerase I 190 kDa polypeptide [Spathaspora
passalidarum NRRL Y-27907]
Length = 1639
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 45/80 (56%)
Query: 2 ETNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
+ G LL T+G+N + +++N + ND+ + TYG+EAA I+ E+ VF
Sbjct: 1487 DAKGNRLLTTEGVNFKAMWDQDDFINVNNITSNDVAAVLHTYGVEAARNTIVNEIYRVFD 1546
Query: 62 VYGIEVDPRHLSLVADYMTH 81
YGI V RHL L+AD MT
Sbjct: 1547 TYGISVSSRHLDLIADMMTR 1566
>gi|400597994|gb|EJP65714.1| RNA polymerase Rpb1 [Beauveria bassiana ARSEF 2860]
Length = 1945
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 46/76 (60%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
K + G+N+ + + +D +K+ ND+ + + YG+EA I+RE+ +F +GI
Sbjct: 1536 KGAITASGVNLRAMQMFTDYIDPDKIETNDVAAVLAMYGVEACRGSIVRELSGIFGGHGI 1595
Query: 66 EVDPRHLSLVADYMTH 81
VD RHL+L+ADYMT
Sbjct: 1596 SVDNRHLNLIADYMTR 1611
>gi|390601472|gb|EIN10866.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Punctularia strigosozonata HHB-11173 SS5]
Length = 1723
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 9 LKTDGINVNYISQYRHL-----LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
+ T+G N + ++ L +D + +Y NDI+ TYG+EAA I+RE+ VF Y
Sbjct: 1574 ITTNGSNFRGVWEFSALSEVSIIDHDGIYSNDIYGFLMTYGVEAARSAILREISGVFDAY 1633
Query: 64 GIEVDPRHLSLVADYMT 80
I+VD RHL L+ADYMT
Sbjct: 1634 KIDVDGRHLELIADYMT 1650
>gi|320594279|gb|EFX06682.1| DNA-directed RNA polymerase 1 subunit [Grosmannia clavigera kw1407]
Length = 2662
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
K ++ T G NV + + ++D +++ NDI + YG+EA IIRE+ VF +GI
Sbjct: 2504 KPVVHTVGTNVRAMQSFSDVIDTDQISTNDIVSVLEIYGVEACRNTIIRELNAVFGSHGI 2563
Query: 66 EVDPRHLSLVADYMTHS 82
VD RHL+L+ DYMT
Sbjct: 2564 SVDHRHLNLIGDYMTRG 2580
>gi|429962638|gb|ELA42182.1| hypothetical protein VICG_00825 [Vittaforma corneae ATCC 50505]
Length = 182
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 41/55 (74%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMT 80
+D + + NDIH + T+G+EAA VI++E+ NVF VYGI ++ RHL LV+DYMT
Sbjct: 52 IDFYQSHTNDIHAVYKTFGVEAAREVIVKEIINVFEVYGININIRHLYLVSDYMT 106
>gi|393216084|gb|EJD01575.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Fomitiporia mediterranea MF3/22]
Length = 1706
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 41/56 (73%)
Query: 25 LLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMT 80
+++LN +Y NDI+ YG+E A +I++E++NVF Y I+VD RHL L+ADYMT
Sbjct: 1580 VVELNDIYANDIYAGLVAYGVEMARALILKEIQNVFGAYNIDVDIRHLELIADYMT 1635
>gi|425770097|gb|EKV08571.1| DNA-directed RNA polymerase [Penicillium digitatum Pd1]
gi|425771644|gb|EKV10081.1| DNA-directed RNA polymerase [Penicillium digitatum PHI26]
Length = 1673
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 2/96 (2%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
T+G+N+ + Y+ ++ + +Y N IH M + YG+EAA I+RE+ VF + I VD R
Sbjct: 1532 TEGVNLLAMRDYQDIIKPHSIYTNSIHDMLNLYGVEAARATIVREMDAVFKGHSISVDNR 1591
Query: 71 HLSLVADYMTHSEFDLIIMVSKSWMLDEVKSTTARS 106
HL+L+ D MT S S++ ++ + S AR+
Sbjct: 1592 HLNLIGDVMTQS--GGFKAFSRNGLVKDASSAFARA 1625
>gi|255941530|ref|XP_002561534.1| Pc16g12350 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211586157|emb|CAP93905.1| Pc16g12350 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1671
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 2/96 (2%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
T+G+N+ + Y+ ++ + +Y N IH M + YG+EAA I+RE+ VF + I VD R
Sbjct: 1530 TEGVNLLAMRDYQDIIKPHSIYTNSIHDMLNLYGVEAARGTIVREMDAVFKGHSISVDNR 1589
Query: 71 HLSLVADYMTHSEFDLIIMVSKSWMLDEVKSTTARS 106
HL+L+ D MT S S++ ++ + S AR+
Sbjct: 1590 HLNLIGDVMTQS--GSFKAFSRNGLVKDASSAFARA 1623
>gi|310798568|gb|EFQ33461.1| RNA polymerase Rpb1 [Glomerella graminicola M1.001]
Length = 1707
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
T G N+ + +Y ++ NK+ NDI + YG+EA I+ E+ VF+ +GI VD R
Sbjct: 1558 TSGCNLKAMQKYGDFINPNKIATNDIGAVLDVYGVEACRNNIVSELAGVFSGHGISVDNR 1617
Query: 71 HLSLVADYMTH 81
HL+L+ADYMT
Sbjct: 1618 HLNLIADYMTR 1628
>gi|302696833|ref|XP_003038095.1| hypothetical protein SCHCODRAFT_12868 [Schizophyllum commune H4-8]
gi|300111792|gb|EFJ03193.1| hypothetical protein SCHCODRAFT_12868 [Schizophyllum commune H4-8]
Length = 1717
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 9 LKTDGINVNYISQY-----RHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
L T+G N+ + + ++D + +Y NDI+ + TYG+E A I+RE+ VF Y
Sbjct: 1569 LTTNGSNLPGVWDFTADLEESIIDEDDMYSNDIYAILKTYGVEMARAAILREMGGVFGAY 1628
Query: 64 GIEVDPRHLSLVADYMT 80
I+VD RHL L+ADYMT
Sbjct: 1629 NIQVDRRHLELIADYMT 1645
>gi|358399047|gb|EHK48390.1| hypothetical protein TRIATDRAFT_236383 [Trichoderma atroviride IMI
206040]
Length = 1679
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 50/81 (61%)
Query: 2 ETNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
+ G + T G+N+ + +Y +D +++ NDI + YG+EA I++E+ VF
Sbjct: 1522 QEKGATAINTTGVNLRAMHRYSDFIDPHRIQTNDIAAVLEVYGVEACRSNIVQELSGVFG 1581
Query: 62 VYGIEVDPRHLSLVADYMTHS 82
+GI+VD RHL+L+AD+MT +
Sbjct: 1582 GHGIKVDNRHLNLIADHMTRN 1602
>gi|389640261|ref|XP_003717763.1| DNA-directed RNA polymerase I subunit RPA1 [Magnaporthe oryzae 70-15]
gi|351640316|gb|EHA48179.1| DNA-directed RNA polymerase I subunit RPA1 [Magnaporthe oryzae 70-15]
gi|440471843|gb|ELQ40777.1| DNA-directed RNA polymerase I subunit RPA1 [Magnaporthe oryzae Y34]
gi|440483991|gb|ELQ64198.1| DNA-directed RNA polymerase I subunit RPA1 [Magnaporthe oryzae P131]
Length = 1719
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 47/75 (62%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
L+ T G N+ + QY ++ N++ ND+ + YG+EA IIRE++ VF + I V
Sbjct: 1566 LVHTAGSNLRAMQQYGSFINPNRISTNDVAAVLEIYGVEACRANIIRELRAVFESHAITV 1625
Query: 68 DPRHLSLVADYMTHS 82
D RHL+L+AD+MT S
Sbjct: 1626 DNRHLNLIADHMTRS 1640
>gi|308811186|ref|XP_003082901.1| RNA polymerase I, large subunit (ISS) [Ostreococcus tauri]
gi|116054779|emb|CAL56856.1| RNA polymerase I, large subunit (ISS) [Ostreococcus tauri]
Length = 1789
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 46/73 (63%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 68
++TDGI+ L+D++ + N + + T+G+EA ++ EV+ VF+VYGI VD
Sbjct: 1635 VQTDGISFRAAWANSDLIDVDMIKSNSVWDIMQTFGVEAGRATLVSEVQAVFSVYGIGVD 1694
Query: 69 PRHLSLVADYMTH 81
RHLSL+ D+MT
Sbjct: 1695 ARHLSLIGDFMTQ 1707
>gi|378727241|gb|EHY53700.1| DNA-directed RNA polymerase I subunit A1 [Exophiala dermatitidis
NIH/UT8656]
Length = 1744
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 48/75 (64%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
++ T+G+N+ + Y+ + + LY N +H M YG+EAA II+E+ VF +GI V
Sbjct: 1600 VITTEGVNLLAMRDYQDQIYPHSLYTNSVHDMLKYYGVEAARMTIIKEIDGVFKGHGITV 1659
Query: 68 DPRHLSLVADYMTHS 82
D RHL+L+ D MT+S
Sbjct: 1660 DMRHLNLIGDAMTNS 1674
>gi|429853059|gb|ELA28158.1| DNA-directed RNA polymerase i subunit rpa1 [Colletotrichum
gloeosporioides Nara gc5]
Length = 1704
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 43/71 (60%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
T G N+ + +Y ++ NK+ NDI + YG+EA I+ E+ VF +GI VD R
Sbjct: 1555 TSGANLRAMQKYGDFINPNKIATNDIAAVLDVYGVEACRTNIVSELAGVFGGHGISVDNR 1614
Query: 71 HLSLVADYMTH 81
HL+L+ADYMT
Sbjct: 1615 HLNLIADYMTR 1625
>gi|302418908|ref|XP_003007285.1| DNA-directed RNA polymerase I subunit RPA1 [Verticillium albo-atrum
VaMs.102]
gi|261354887|gb|EEY17315.1| DNA-directed RNA polymerase I subunit RPA1 [Verticillium albo-atrum
VaMs.102]
Length = 1686
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 43/71 (60%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
T G N+ + +Y ++ NK NDI + YG+EA I+ E+ NVF +GI VD R
Sbjct: 1537 TSGANLRIMQKYSDYINPNKTVTNDIAAVLDVYGVEACRSNIVLELGNVFGGHGISVDNR 1596
Query: 71 HLSLVADYMTH 81
HL+L+ADYMT
Sbjct: 1597 HLNLIADYMTR 1607
>gi|71033377|ref|XP_766330.1| RNA polymerase large subunit [Theileria parva strain Muguga]
gi|68353287|gb|EAN34047.1| RNA polymerase large subunit, putative [Theileria parva]
Length = 1996
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 6 KHLLKTDGINVNYISQYRH-LLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
++ L DG N+ + + ++D N + +ND+ + YGIEAA I+ E++ VF+VYG
Sbjct: 1832 EYTLHCDGTNLKRLFMLKDGIVDFNLIKMNDVATVLKYYGIEAARSCIVSELQKVFSVYG 1891
Query: 65 IEVDPRHLSLVADYMTH 81
I+V+ RHL+L+AD+MT
Sbjct: 1892 IKVNYRHLTLIADFMTQ 1908
>gi|346976952|gb|EGY20404.1| DNA-directed RNA polymerase I subunit RPA1 [Verticillium dahliae
VdLs.17]
Length = 1702
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 43/71 (60%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
T G N+ + +Y ++ NK NDI + YG+EA I+ E+ NVF +GI VD R
Sbjct: 1553 TSGANLRIMQKYSDYINPNKTTTNDIAAVLDVYGVEACRSNIVLELGNVFGGHGISVDNR 1612
Query: 71 HLSLVADYMTH 81
HL+L+ADYMT
Sbjct: 1613 HLNLIADYMTR 1623
>gi|389746863|gb|EIM88042.1| beta and beta-prime subunits of DNA dependent RNA-polymerase [Stereum
hirsutum FP-91666 SS1]
Length = 1754
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 5/82 (6%)
Query: 4 NGKHLLKTDGINVNYISQY-----RHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKN 58
+G+ + T+G N + ++ +++ + +Y NDI+ + TYG+E A I+RE+
Sbjct: 1595 DGRVKVTTNGSNFKGMWRFACSGVESMIEEDSIYSNDIYAILMTYGVEMARAAIVREMSG 1654
Query: 59 VFAVYGIEVDPRHLSLVADYMT 80
VF VY I+VD RHL L+ADYMT
Sbjct: 1655 VFDVYKIDVDSRHLELIADYMT 1676
>gi|307107442|gb|EFN55685.1| hypothetical protein CHLNCDRAFT_23122 [Chlorella variabilis]
Length = 121
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 31/43 (72%)
Query: 39 MASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
M + YG+EA I+REV VF YGI VDPRHL L+ADYMTH
Sbjct: 1 MLAAYGVEACRACIVREVSGVFGAYGIGVDPRHLILIADYMTH 43
>gi|353240973|emb|CCA72815.1| probable DNA-directed RNA polymerase I [Piriformospora indica DSM
11827]
Length = 1755
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 43/56 (76%)
Query: 25 LLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMT 80
++D+ ++ N IH + +TYG+EAA I++E+K+VF VY I+V+ RHL L+ADYMT
Sbjct: 1628 VVDVTRISTNSIHAILATYGVEAARASIVKEIKDVFDVYSIKVNIRHLMLIADYMT 1683
>gi|154276528|ref|XP_001539109.1| hypothetical protein HCAG_06714 [Ajellomyces capsulatus NAm1]
gi|150414182|gb|EDN09547.1| hypothetical protein HCAG_06714 [Ajellomyces capsulatus NAm1]
Length = 1573
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
N H++ TDG+N+ + +Y+ + + LY N I M YG+EAA IIRE+ VF +
Sbjct: 1426 NPAHIV-TDGVNLLAMREYQDFVYPHSLYTNSIADMLVMYGVEAARACIIREMAAVFDGH 1484
Query: 64 GIEVDPRHLSLVADYMTHS 82
I VD RHL+L+ D MTH+
Sbjct: 1485 SISVDNRHLNLIGDVMTHA 1503
>gi|254581290|ref|XP_002496630.1| ZYRO0D04532p [Zygosaccharomyces rouxii]
gi|238939522|emb|CAR27697.1| ZYRO0D04532p [Zygosaccharomyces rouxii]
Length = 1667
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
+ +L T+G+N + +D++ + ND+ + TYG+EAA I+ E+ NVF+ Y I
Sbjct: 1519 RRMLTTEGVNFQAMWDQEMFIDVDGIRSNDVAAVLRTYGVEAARNTIVYEINNVFSRYAI 1578
Query: 66 EVDPRHLSLVADYMTH 81
V RHL L+AD MT
Sbjct: 1579 SVSFRHLDLIADLMTR 1594
>gi|225560308|gb|EEH08590.1| RNA polymerase I largest subunit [Ajellomyces capsulatus G186AR]
Length = 1697
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
N H++ TDG+N+ + +Y+ + + LY N I M YG+EAA IIRE+ VF +
Sbjct: 1550 NPAHIV-TDGVNLLAMREYQDFVYPHSLYTNSIADMLVMYGVEAARACIIREMAAVFDGH 1608
Query: 64 GIEVDPRHLSLVADYMTHS 82
I VD RHL+L+ D MTH+
Sbjct: 1609 SISVDNRHLNLIGDVMTHA 1627
>gi|325090322|gb|EGC43632.1| RNA polymerase I largest subunit [Ajellomyces capsulatus H88]
Length = 1697
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
N H++ TDG+N+ + +Y+ + + LY N I M YG+EAA IIRE+ VF +
Sbjct: 1550 NPAHIV-TDGVNLLAMREYQDFVYPHSLYTNSIADMLVMYGVEAARACIIREMAAVFDGH 1608
Query: 64 GIEVDPRHLSLVADYMTHS 82
I VD RHL+L+ D MTH+
Sbjct: 1609 SISVDNRHLNLIGDVMTHA 1627
>gi|242774376|ref|XP_002478429.1| DNA-directed RNA polymerase I subunit (Rpa190), putative [Talaromyces
stipitatus ATCC 10500]
gi|218722048|gb|EED21466.1| DNA-directed RNA polymerase I subunit (Rpa190), putative [Talaromyces
stipitatus ATCC 10500]
Length = 1689
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 49/81 (60%)
Query: 2 ETNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
E N + +G+N+ + Y+ ++ + + N IH M YG+EAA IIRE+ +VF+
Sbjct: 1539 EKNEPAKIDIEGVNLKAMRGYQDYINPHTIRTNSIHDMLIFYGVEAARSTIIREMSDVFS 1598
Query: 62 VYGIEVDPRHLSLVADYMTHS 82
+ I VD RHL+L+ D MTHS
Sbjct: 1599 GHSITVDNRHLNLIGDVMTHS 1619
>gi|240278768|gb|EER42274.1| DNA-directed RNA polymerase I [Ajellomyces capsulatus H143]
Length = 1676
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
N H++ TDG+N+ + +Y+ + + LY N I M YG+EAA IIRE+ VF +
Sbjct: 1529 NPAHIV-TDGVNLLAMREYQDFVYPHSLYTNSIADMLVMYGVEAARACIIREMAAVFDGH 1587
Query: 64 GIEVDPRHLSLVADYMTHS 82
I VD RHL+L+ D MTH+
Sbjct: 1588 SISVDNRHLNLIGDVMTHA 1606
>gi|209875909|ref|XP_002139397.1| DNA-directed RNA polymerase I largest subunit [Cryptosporidium muris
RN66]
gi|209555003|gb|EEA05048.1| DNA-directed RNA polymerase I largest subunit, putative
[Cryptosporidium muris RN66]
Length = 1981
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 13 GINVNYISQYRHLLDL-NKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRH 71
G N+ YI L L N + NDI + YGIEAA + +I E+ NVFAVYGI VD RH
Sbjct: 1816 GTNIGYIYNISPDLVLHNNIRSNDIQTVYKYYGIEAARKCLINELTNVFAVYGINVDYRH 1875
Query: 72 LSLVADYMTHS 82
LSL+ D +T S
Sbjct: 1876 LSLIGDTVTFS 1886
>gi|290990590|ref|XP_002677919.1| DNA-directed RNA polymerase subunit A [Naegleria gruberi]
gi|284091529|gb|EFC45175.1| DNA-directed RNA polymerase subunit A [Naegleria gruberi]
Length = 1755
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 53/85 (62%), Gaps = 3/85 (3%)
Query: 3 TNGKHLLKTDGIN---VNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNV 59
TN + L +G N ++ + LLDLN+L N+++ M YGIE+ +I+++V V
Sbjct: 1604 TNDGYDLSIEGFNFYALHALPMSHELLDLNRLVTNNVNIMNDHYGIESGYGLIVKDVSYV 1663
Query: 60 FAVYGIEVDPRHLSLVADYMTHSEF 84
F +YG+EV P H+ L+ADY+T+ +
Sbjct: 1664 FDMYGMEVSPAHIQLIADYLTYRGY 1688
>gi|380492531|emb|CCF34539.1| RNA polymerase Rpb1 [Colletotrichum higginsianum]
Length = 1709
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
T G N+ + +Y ++ NK+ NDI + YG+EA I+ E+ F +GI VD R
Sbjct: 1560 TSGCNLKAMQKYSDFINPNKIATNDIGAVLDVYGVEACRSNIVSELAGXFGGHGISVDNR 1619
Query: 71 HLSLVADYMTH 81
HL+L+ADYMT
Sbjct: 1620 HLNLIADYMTR 1630
>gi|403353481|gb|EJY76278.1| DNA-directed RNA polymerase [Oxytricha trifallax]
Length = 1815
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 62/115 (53%), Gaps = 5/115 (4%)
Query: 2 ETNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
+ N + L G+N + + D+N++ NDI + YG+EA +++EV+ VF
Sbjct: 1662 KANEEPYLLVQGLNFEAFYNDQDIFDVNRIQSNDIWQIMKKYGVEAGCANLVKEVRQVFN 1721
Query: 62 VYGIEVDPRHLSLVADYMT----HSEFDLIIM-VSKSWMLDEVKSTTARSVTPAC 111
+YGIEV+ RHLSL+ D++T + F+ I M S S L TT + + +C
Sbjct: 1722 MYGIEVNYRHLSLIGDFITNNGEYRAFNRIGMEESSSPFLKMSFETTMKYLVASC 1776
>gi|402222556|gb|EJU02622.1| subunit of DNA dependent RNA-polymerase [Dacryopinax sp. DJM-731 SS1]
Length = 1749
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 9 LKTDGINVNYISQ-YRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
L T+G N + Q +D + +Y NDI+ + YG+EAA I++E++ VF+ YGIEV
Sbjct: 1606 LMTNGCNFPALWQILDDSVDPDLIYSNDINAVLQHYGVEAARFAIVQEIRAVFSTYGIEV 1665
Query: 68 DPRHLSLVADYMT 80
+ RHL L+ADYMT
Sbjct: 1666 NFRHLRLIADYMT 1678
>gi|409079663|gb|EKM80024.1| hypothetical protein AGABI1DRAFT_57378 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1750
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 9 LKTDGINVNYISQY-----RHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
L T+G N + ++ +L +++Y NDI+ + TYG+E A I+RE+ VF Y
Sbjct: 1604 LTTNGSNFRGMWKFAVQSGESILRDDEIYSNDIYAILMTYGVEMARAAILREMGGVFGAY 1663
Query: 64 GIEVDPRHLSLVADYMT 80
I+VD RHL L+ADYMT
Sbjct: 1664 NIQVDRRHLELIADYMT 1680
>gi|426198573|gb|EKV48499.1| hypothetical protein AGABI2DRAFT_220361 [Agaricus bisporus var.
bisporus H97]
Length = 1750
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 9 LKTDGINVNYISQY-----RHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
L T+G N + ++ +L +++Y NDI+ + TYG+E A I+RE+ VF Y
Sbjct: 1604 LTTNGSNFRGMWKFAVQSGESILRDDEIYSNDIYAILMTYGVEMARAAILREMGGVFGAY 1663
Query: 64 GIEVDPRHLSLVADYMT 80
I+VD RHL L+ADYMT
Sbjct: 1664 NIQVDRRHLELIADYMT 1680
>gi|337263094|gb|AEI69258.1| RNA polymerase I largest subunit [Encephalitozoon romaleae]
gi|396081289|gb|AFN82907.1| DNA-directed RNA polymerase subunit alpha [Encephalitozoon romaleae
SJ-2008]
Length = 1396
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 38/57 (66%)
Query: 25 LLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
LD+ K NDI+ + ST GIEAA II E+ VF VYGI +D RHL LVADYMT
Sbjct: 1265 FLDIYKAESNDIYNVYSTLGIEAARYAIINEIVKVFDVYGITIDSRHLLLVADYMTR 1321
>gi|303389110|ref|XP_003072788.1| DNA-directed RNA polymerase subunit alpha [Encephalitozoon
intestinalis ATCC 50506]
gi|303301930|gb|ADM11428.1| DNA-directed RNA polymerase subunit alpha [Encephalitozoon
intestinalis ATCC 50506]
Length = 1393
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
Query: 22 YRHLLDLNKLY---VNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADY 78
Y LLDL +Y NDI+ + T GIEAA II EV VF VYGI +D RHL LVADY
Sbjct: 1255 YEDLLDLLDIYNSESNDIYNVYLTLGIEAARHAIINEVVKVFDVYGISIDARHLLLVADY 1314
Query: 79 MTH 81
MT
Sbjct: 1315 MTR 1317
>gi|402078175|gb|EJT73524.1| DNA-directed RNA polymerase I subunit RPA1 [Gaeumannomyces graminis
var. tritici R3-111a-1]
Length = 1726
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 44/72 (61%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
T G NV + QY ++ N++ NDI + YG+EA II+E++ VF + I VD R
Sbjct: 1576 TAGSNVRAMQQYAEYINPNRISTNDIAAVLEIYGVEACRNSIIQELRAVFESHAIAVDNR 1635
Query: 71 HLSLVADYMTHS 82
HL+L+ D+MT S
Sbjct: 1636 HLNLIGDHMTKS 1647
>gi|254569378|ref|XP_002491799.1| RNA polymerase I subunit [Komagataella pastoris GS115]
gi|238031596|emb|CAY69519.1| RNA polymerase I subunit [Komagataella pastoris GS115]
gi|328351700|emb|CCA38099.1| DNA-directed RNA polymerase I subunit A1 [Komagataella pastoris CBS
7435]
Length = 1640
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
+H + T+G+N + + +D++ + ND + + TYG+EAA I+ E+ NVF Y I
Sbjct: 1492 RHFI-TEGVNFQAMWEQDAFVDVDAIRSNDTYAVLRTYGVEAARNTIVNEINNVFGRYAI 1550
Query: 66 EVDPRHLSLVADYMTH 81
V RHL L+AD MT
Sbjct: 1551 AVSSRHLDLIADMMTR 1566
>gi|336373803|gb|EGO02141.1| hypothetical protein SERLA73DRAFT_86356 [Serpula lacrymans var.
lacrymans S7.3]
Length = 1688
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 5/77 (6%)
Query: 9 LKTDGINVNYISQY-----RHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
L T+G N I + +++ N +Y NDI+ + TYG+E A I+RE+ VF Y
Sbjct: 1540 LTTNGSNFRGIWLFASGADESIIEDNNIYSNDIYAILKTYGVEMARAAILREMGGVFDAY 1599
Query: 64 GIEVDPRHLSLVADYMT 80
I+VD RHL L+ADYMT
Sbjct: 1600 KIDVDFRHLELIADYMT 1616
>gi|336386619|gb|EGO27765.1| hypothetical protein SERLADRAFT_446992 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1710
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 5/77 (6%)
Query: 9 LKTDGINVNYISQY-----RHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
L T+G N I + +++ N +Y NDI+ + TYG+E A I+RE+ VF Y
Sbjct: 1562 LTTNGSNFRGIWLFASGADESIIEDNNIYSNDIYAILKTYGVEMARAAILREMGGVFDAY 1621
Query: 64 GIEVDPRHLSLVADYMT 80
I+VD RHL L+ADYMT
Sbjct: 1622 KIDVDFRHLELIADYMT 1638
>gi|407928328|gb|EKG21187.1| RNA polymerase alpha subunit [Macrophomina phaseolina MS6]
Length = 1711
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 43/71 (60%)
Query: 12 DGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRH 71
DG + + Y+ + + NK+Y NDI + YG+EAA I+RE+ VF +GI VD RH
Sbjct: 1572 DGSALLALRDYQDVHNPNKMYTNDIAQILRLYGVEAARASIVREMSAVFGGHGISVDNRH 1631
Query: 72 LSLVADYMTHS 82
L+L+ D MT
Sbjct: 1632 LNLIGDVMTRG 1642
>gi|323462790|pdb|2Y0S|C Chain C, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
gi|323462812|pdb|2Y0S|Y Chain Y, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
gi|400260744|pdb|4AYB|C Chain C, Rnap At 3.2ang
gi|400260761|pdb|4B1O|C Chain C, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|400260787|pdb|4B1P|Y Chain Y, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|219814431|gb|ACL36489.1| RNA polymerase subunit 1C [Sulfolobus shibatae B12]
Length = 395
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 60/101 (59%), Gaps = 3/101 (2%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
++++ TDG N++ + + + D+ K+ N+I + +GIEAA +IIRE+ V A G+
Sbjct: 248 EYIILTDGSNLSGVLSVKGV-DIAKVETNNIREIEEVFGIEAAREIIIREISKVLAEQGL 306
Query: 66 EVDPRHLSLVADYMTHSEFDLIIMVSKSWMLDEVKSTTARS 106
+VD RH+ LVAD MT + ++ + + + E S AR+
Sbjct: 307 DVDMRHILLVADVMTRT--GVVRQIGRHGVTGEKNSVLARA 345
>gi|401826144|ref|XP_003887166.1| DNA-directed RNA polymerase subunit beta [Encephalitozoon hellem ATCC
50504]
gi|337263120|gb|AEI69271.1| DNA-directed RNA polymerase subunit alpha [Encephalitozoon hellem]
gi|392998324|gb|AFM98185.1| DNA-directed RNA polymerase subunit beta' [Encephalitozoon hellem
ATCC 50504]
Length = 1396
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 37/57 (64%)
Query: 25 LLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
LD+ NDI+ + T GIEAA II E+ VF VYGI +DPRHL LVADYMT
Sbjct: 1265 FLDIYNAESNDIYNVYLTLGIEAARHAIISEIVKVFDVYGITIDPRHLLLVADYMTR 1321
>gi|385773845|ref|YP_005646412.1| DNA-directed RNA polymerase subunit A'' [Sulfolobus islandicus
HVE10/4]
gi|385776480|ref|YP_005649048.1| DNA-directed RNA polymerase subunit A'' [Sulfolobus islandicus
REY15A]
gi|323475228|gb|ADX85834.1| DNA-directed RNA polymerase, subunit A'' [Sulfolobus islandicus
REY15A]
gi|323477960|gb|ADX83198.1| DNA-directed RNA polymerase, subunit A'' [Sulfolobus islandicus
HVE10/4]
Length = 392
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 60/101 (59%), Gaps = 3/101 (2%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
++++ TDG N++ + + + D+ K+ N+I + +GIEAA +IIRE+ V A G+
Sbjct: 245 EYIILTDGSNLSGVLSVKGV-DIAKVETNNIREIEEVFGIEAAREIIIREISKVLAEQGL 303
Query: 66 EVDPRHLSLVADYMTHSEFDLIIMVSKSWMLDEVKSTTARS 106
+VD RH+ LVAD MT + ++ + + + E S AR+
Sbjct: 304 DVDMRHILLVADVMTRT--GVVRQIGRHGVTGEKNSVLARA 342
>gi|237823478|pdb|2WAQ|C Chain C, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823492|pdb|2WB1|C Chain C, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823514|pdb|2WB1|Y Chain Y, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
Length = 395
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 60/101 (59%), Gaps = 3/101 (2%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
++++ TDG N++ + + + D+ K+ N+I + +GIEAA +IIRE+ V A G+
Sbjct: 248 EYIILTDGSNLSGVLSVKGV-DIAKVETNNIREIEEVFGIEAAREIIIREISKVLAEQGL 306
Query: 66 EVDPRHLSLVADYMTHSEFDLIIMVSKSWMLDEVKSTTARS 106
+VD RH+ LVAD MT + ++ + + + E S AR+
Sbjct: 307 DVDMRHILLVADVMTRT--GVVRQIGRHGVTGEKNSVLARA 345
>gi|227828175|ref|YP_002829955.1| DNA-directed RNA polymerase subunit A'' [Sulfolobus islandicus
M.14.25]
gi|227830882|ref|YP_002832662.1| DNA-directed RNA polymerase subunit A'' [Sulfolobus islandicus
L.S.2.15]
gi|229579768|ref|YP_002838167.1| DNA-directed RNA polymerase subunit A'' [Sulfolobus islandicus
Y.G.57.14]
gi|229581563|ref|YP_002839962.1| DNA-directed RNA polymerase subunit A'' [Sulfolobus islandicus
Y.N.15.51]
gi|229585404|ref|YP_002843906.1| DNA-directed RNA polymerase subunit A'' [Sulfolobus islandicus
M.16.27]
gi|238620365|ref|YP_002915191.1| DNA-directed RNA polymerase subunit A'' [Sulfolobus islandicus
M.16.4]
gi|284998389|ref|YP_003420157.1| DNA-directed RNA polymerase subunit A'' [Sulfolobus islandicus
L.D.8.5]
gi|259494157|sp|C3MZM9.1|RPOA2_SULIA RecName: Full=DNA-directed RNA polymerase subunit A''
gi|259494158|sp|C4KIV9.1|RPOA2_SULIK RecName: Full=DNA-directed RNA polymerase subunit A''
gi|259494159|sp|C3MRK4.1|RPOA2_SULIL RecName: Full=DNA-directed RNA polymerase subunit A''
gi|259494160|sp|C3MYA0.1|RPOA2_SULIM RecName: Full=DNA-directed RNA polymerase subunit A''
gi|259494161|sp|C3NFS2.1|RPOA2_SULIN RecName: Full=DNA-directed RNA polymerase subunit A''
gi|259494162|sp|C3N7Q1.1|RPOA2_SULIY RecName: Full=DNA-directed RNA polymerase subunit A''
gi|227457330|gb|ACP36017.1| DNA-directed RNA polymerase, subunit A'' [Sulfolobus islandicus
L.S.2.15]
gi|227459971|gb|ACP38657.1| DNA-directed RNA polymerase, subunit A'' [Sulfolobus islandicus
M.14.25]
gi|228010483|gb|ACP46245.1| DNA-directed RNA polymerase, subunit A'' [Sulfolobus islandicus
Y.G.57.14]
gi|228012279|gb|ACP48040.1| DNA-directed RNA polymerase, subunit A'' [Sulfolobus islandicus
Y.N.15.51]
gi|228020454|gb|ACP55861.1| DNA-directed RNA polymerase, subunit A'' [Sulfolobus islandicus
M.16.27]
gi|238381435|gb|ACR42523.1| DNA-directed RNA polymerase, subunit A'' [Sulfolobus islandicus
M.16.4]
gi|284446285|gb|ADB87787.1| DNA-directed RNA polymerase, subunit A'' [Sulfolobus islandicus
L.D.8.5]
Length = 392
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 60/101 (59%), Gaps = 3/101 (2%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
++++ TDG N++ + + + D+ K+ N+I + +GIEAA +IIRE+ V A G+
Sbjct: 245 EYIILTDGSNLSGVLSVKGV-DIAKVETNNIREIEEVFGIEAAREIIIREISKVLAEQGL 303
Query: 66 EVDPRHLSLVADYMTHSEFDLIIMVSKSWMLDEVKSTTARS 106
+VD RH+ LVAD MT + ++ + + + E S AR+
Sbjct: 304 DVDMRHILLVADVMTRT--GVVRQIGRHGVTGEKNSVLARA 342
>gi|356498537|ref|XP_003518107.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
RPA190-like [Glycine max]
Length = 1568
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 68
L+T G++ + LD+ +Y N++ M + YG+EAA IIREV+NVF I V+
Sbjct: 1427 LQTSGVHFKTFWELEDDLDVRYIYSNNVLAMLNAYGVEAARETIIREVQNVFX---ISVN 1483
Query: 69 PRHLSLVADYMTHS 82
RHL L AD+MTHS
Sbjct: 1484 IRHLKLNADFMTHS 1497
>gi|340508051|gb|EGR33854.1| hypothetical protein IMG5_034860 [Ichthyophthirius multifiliis]
Length = 1642
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 54/91 (59%), Gaps = 3/91 (3%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 68
++ G+N I + H + + + NDI + +YGIEAA I++E+ VF VYG+ VD
Sbjct: 1502 VQVQGVNFKSIWKMEHF-NADTIDSNDIAAINLSYGIEAARNAIVKEIVTVFGVYGVVVD 1560
Query: 69 PRHLSLVADYMTHSEFDLIIMVSKSWMLDEV 99
RHL L+ADY+T + ++++WM + +
Sbjct: 1561 YRHLYLIADYLTFG--GKLKAMNRTWMEENI 1589
>gi|392592741|gb|EIW82067.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Coniophora puteana RWD-64-598 SS2]
Length = 1699
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 37/52 (71%)
Query: 29 NKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMT 80
+ +Y NDI+ + TYG+E A I+RE+ VF+ Y I+VD RHL L+ADYMT
Sbjct: 1577 DTIYSNDIYAILKTYGVEMARAAILREIGGVFSAYKIDVDMRHLELIADYMT 1628
>gi|261200871|ref|XP_002626836.1| DNA-directed RNA polymerase I subunit [Ajellomyces dermatitidis
SLH14081]
gi|239593908|gb|EEQ76489.1| DNA-directed RNA polymerase I subunit [Ajellomyces dermatitidis
SLH14081]
Length = 1645
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 44/72 (61%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
TDG+N+ + Y+ + + LY N I M YG+EAA IIRE+ VF + I VD R
Sbjct: 1504 TDGVNLLAMRDYQDYVYPHSLYTNSIADMLLMYGVEAARASIIREMAAVFDSHSISVDNR 1563
Query: 71 HLSLVADYMTHS 82
HL+L+ D MTH+
Sbjct: 1564 HLNLIGDVMTHA 1575
>gi|212531955|ref|XP_002146134.1| DNA-directed RNA polymerase I subunit (Rpa190), putative [Talaromyces
marneffei ATCC 18224]
gi|210071498|gb|EEA25587.1| DNA-directed RNA polymerase I subunit (Rpa190), putative [Talaromyces
marneffei ATCC 18224]
Length = 1689
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 45/71 (63%)
Query: 12 DGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRH 71
+G+N+ + Y+ + + + N IH M YG+EAA IIRE+ +VF+ + I VD RH
Sbjct: 1549 EGVNLLAMRDYQDYIKPHTIRTNSIHDMLIYYGVEAARSTIIREMSDVFSGHSITVDNRH 1608
Query: 72 LSLVADYMTHS 82
L+L+ D MTHS
Sbjct: 1609 LNLIGDVMTHS 1619
>gi|327351177|gb|EGE80034.1| DNA-directed RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
Length = 1699
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 44/72 (61%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
TDG+N+ + Y+ + + LY N I M YG+EAA IIRE+ VF + I VD R
Sbjct: 1558 TDGVNLLAMRDYQDYVYPHSLYTNSIADMLLMYGVEAARASIIREMAAVFDSHSISVDNR 1617
Query: 71 HLSLVADYMTHS 82
HL+L+ D MTH+
Sbjct: 1618 HLNLIGDVMTHA 1629
>gi|239607218|gb|EEQ84205.1| DNA-directed RNA polymerase I subunit [Ajellomyces dermatitidis ER-3]
Length = 1646
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 44/72 (61%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
TDG+N+ + Y+ + + LY N I M YG+EAA IIRE+ VF + I VD R
Sbjct: 1505 TDGVNLLAMRDYQDYVYPHSLYTNSIADMLLMYGVEAARASIIREMAAVFDSHSISVDNR 1564
Query: 71 HLSLVADYMTHS 82
HL+L+ D MTH+
Sbjct: 1565 HLNLIGDVMTHA 1576
>gi|164655658|ref|XP_001728958.1| hypothetical protein MGL_3952 [Malassezia globosa CBS 7966]
gi|159102846|gb|EDP41744.1| hypothetical protein MGL_3952 [Malassezia globosa CBS 7966]
Length = 1673
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 9 LKTDGINVNYISQYRH-LLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
L +GIN+ + + ++DL+++Y NDI + YG+EAA I+ E+K +F YGI V
Sbjct: 1527 LTAEGINLPGMWDFGFGVVDLDRIYSNDIGALLYCYGVEAARAAIVSELKGIFDTYGIGV 1586
Query: 68 DPRHLSLVADYMT 80
RH+ L+ADY T
Sbjct: 1587 SMRHMFLIADYQT 1599
>gi|15897170|ref|NP_341775.1| DNA-directed RNA polymerase subunit A'' [Sulfolobus solfataricus
P2]
gi|239782144|pdb|3HKZ|C Chain C, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
gi|239782157|pdb|3HKZ|M Chain M, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
gi|13813359|gb|AAK40565.1| DNA-directed RNA polymerase, subunit A'' (rpoA2) [Sulfolobus
solfataricus P2]
Length = 395
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 60/101 (59%), Gaps = 3/101 (2%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
++++ TDG N++ + + + D+ K+ N+I + +GIEAA +IIRE+ V A G+
Sbjct: 248 EYIILTDGSNLSGVLSVKGV-DVAKVETNNIREIEEVFGIEAAREIIIREISKVLAEQGL 306
Query: 66 EVDPRHLSLVADYMTHSEFDLIIMVSKSWMLDEVKSTTARS 106
+VD RH+ L+AD MT + ++ + + + E S AR+
Sbjct: 307 DVDIRHILLIADVMTRT--GIVRQIGRHGVTGEKNSVLARA 345
>gi|284174416|ref|ZP_06388385.1| DNA-directed RNA polymerase subunit A'' [Sulfolobus solfataricus
98/2]
gi|384433683|ref|YP_005643041.1| DNA-directed RNA polymerase subunit A'' [Sulfolobus solfataricus
98/2]
gi|14548240|sp|P58192.1|RPOA2_SULSO RecName: Full=DNA-directed RNA polymerase subunit A''
gi|167744882|pdb|2PMZ|C Chain C, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|167744893|pdb|2PMZ|G Chain G, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|261601837|gb|ACX91440.1| DNA-directed RNA polymerase, subunit A'' [Sulfolobus solfataricus
98/2]
Length = 392
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 60/101 (59%), Gaps = 3/101 (2%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
++++ TDG N++ + + + D+ K+ N+I + +GIEAA +IIRE+ V A G+
Sbjct: 245 EYIILTDGSNLSGVLSVKGV-DVAKVETNNIREIEEVFGIEAAREIIIREISKVLAEQGL 303
Query: 66 EVDPRHLSLVADYMTHSEFDLIIMVSKSWMLDEVKSTTARS 106
+VD RH+ L+AD MT + ++ + + + E S AR+
Sbjct: 304 DVDIRHILLIADVMTRT--GIVRQIGRHGVTGEKNSVLARA 342
>gi|452820032|gb|EME27080.1| DNA-directed RNA polymerase I subunit A1 [Galdieria sulphuraria]
Length = 2200
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 9 LKTDGINVNYISQYRH-LLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
L+ G N+ I +Y + LDLN + ND++ M YG+E+A + E+ VF YGI V
Sbjct: 2052 LEVQGSNLAAIWEYGYDYLDLNHIQTNDVYAMLMHYGVESARETLRIELAKVFGAYGIPV 2111
Query: 68 DPRHLSLVADYMT 80
D RHL+L++D MT
Sbjct: 2112 DSRHLALISDVMT 2124
>gi|67591609|ref|XP_665584.1| RNA polymerase A/beta'/A'' subunit [Cryptosporidium hominis TU502]
gi|54656343|gb|EAL35355.1| RNA polymerase A/beta'/A'' subunit [Cryptosporidium hominis]
Length = 472
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 5/86 (5%)
Query: 2 ETNGKHL----LKTDGINVNYISQYR-HLLDLNKLYVNDIHYMASTYGIEAANRVIIREV 56
ET+ K L + +G NV ++ + ++ +K+ NDI + YG+EAA II E+
Sbjct: 269 ETSDKSLSQFEVTVEGTNVGHVFKISPRYINHDKIRFNDIQTVYKYYGVEAARHCIINEL 328
Query: 57 KNVFAVYGIEVDPRHLSLVADYMTHS 82
+NVF+VYGI VD RHL+L++D +T S
Sbjct: 329 RNVFSVYGINVDYRHLTLISDSITAS 354
>gi|58409|emb|CAA42846.1| subunit A'' of RNA polymerase [Thermococcus celer]
Length = 199
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 72/147 (48%), Gaps = 13/147 (8%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
G+++++T+G N + + + D + NDI +A GIEAA II E+
Sbjct: 46 TGEYIIRTEGSNFKQVLKVPGV-DPTRTRTNDIREIAEVLGIEAARNAIIDEILKTMEEQ 104
Query: 64 GIEVDPRHLSLVADYMTHSEFDLIIM-VSKSWMLDEVKSTTARSVTPACEPNSHHDVKKI 122
G+EVD RH+ LVAD MT D +I + + ++ E S AR+ A E + H
Sbjct: 105 GLEVDVRHIMLVADMMT---LDGVIRPIGRHGIVGEKASVLARA---AFEITTQH---LF 155
Query: 123 EFKKQNKILPL--VLQNSLTGSSYPAN 147
E ++ + PL V++N L G P
Sbjct: 156 EAAERGAVDPLNGVVENVLIGQPVPVG 182
>gi|429963895|gb|ELA45893.1| hypothetical protein VCUG_02618 [Vavraia culicis 'floridensis']
Length = 1091
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 18 YISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVAD 77
Y++ Y +D N ND++ GIEA VIIRE++ VF YGIE+D RHL L+AD
Sbjct: 963 YLNDY---IDFNTCISNDVYNTWEVLGIEACRSVIIREIRAVFQAYGIEIDVRHLMLIAD 1019
Query: 78 YMT 80
MT
Sbjct: 1020 KMT 1022
>gi|159117294|ref|XP_001708867.1| RNA polymerase AI large subunit [Giardia lamblia ATCC 50803]
gi|157436981|gb|EDO81193.1| RNA polymerase AI large subunit [Giardia lamblia ATCC 50803]
Length = 2142
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 38/58 (65%)
Query: 25 LLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHS 82
++ + +Y N+I + YGIEAA II E+ VF+ Y IEVD RHLSL+AD MT S
Sbjct: 2017 FINFDNIYTNNISQIFEIYGIEAARNAIIEEIHRVFSTYHIEVDERHLSLIADSMTLS 2074
>gi|401020|sp|P29158.2|RPOA2_THECE RecName: Full=DNA-directed RNA polymerase subunit A''
gi|48142|emb|CAA47724.1| Subunit A'' of DNA-dependent RNA polymerase [Thermococcus celer]
Length = 393
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 72/147 (48%), Gaps = 13/147 (8%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
G+++++T+G N + + + D + NDI +A GIEAA II E+
Sbjct: 240 TGEYIIRTEGSNFKQVLKVPGV-DPTRTRTNDIREIAEVLGIEAARNAIIDEILKTMEEQ 298
Query: 64 GIEVDPRHLSLVADYMTHSEFDLIIM-VSKSWMLDEVKSTTARSVTPACEPNSHHDVKKI 122
G+EVD RH+ LVAD MT D +I + + ++ E S AR+ A E + H
Sbjct: 299 GLEVDVRHIMLVADMMT---LDGVIRPIGRHGIVGEKASVLARA---AFEITTQH---LF 349
Query: 123 EFKKQNKILPL--VLQNSLTGSSYPAN 147
E ++ + PL V++N L G P
Sbjct: 350 EAAERGAVDPLNGVVENVLIGQPVPVG 376
>gi|378756627|gb|EHY66651.1| RNA polymerase 2, partial [Nematocida sp. 1 ERTm2]
Length = 1035
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/49 (59%), Positives = 34/49 (69%)
Query: 34 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHS 82
N I + G+EAA IIRE+ VF VYGI VD RHLSL+ADYMTH+
Sbjct: 917 NSIWETYNVLGVEAARSAIIREIAAVFDVYGIGVDYRHLSLIADYMTHT 965
>gi|253745241|gb|EET01289.1| RNA polymerase AI large subunit [Giardia intestinalis ATCC 50581]
Length = 2144
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 39/58 (67%)
Query: 25 LLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHS 82
++ + +Y N+I+ + YGIEAA II E+ VF+ Y IEVD RHLSL+AD MT S
Sbjct: 2019 FINFDNIYTNNINQIFEIYGIEAARSSIIEEIHRVFSTYHIEVDERHLSLIADSMTLS 2076
>gi|325969567|ref|YP_004245759.1| DNA-directed RNA polymerase subunit A'' [Vulcanisaeta moutnovskia
768-28]
gi|323708770|gb|ADY02257.1| DNA-directed RNA polymerase, subunit A'' [Vulcanisaeta moutnovskia
768-28]
Length = 391
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 60/105 (57%), Gaps = 3/105 (2%)
Query: 2 ETNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
E +G+ +++T+G N+ + + D + NDIH +A G+EAA VI+RE+K V
Sbjct: 242 ERDGEWIIETEGTNLEAVLTIDGV-DYRRTISNDIHEVAEVLGVEAARTVIMRELKKVLD 300
Query: 62 VYGIEVDPRHLSLVADYMTHSEFDLIIMVSKSWMLDEVKSTTARS 106
G++ D RHL LV+D MT + + V + ++ E +S AR+
Sbjct: 301 QQGLDTDLRHLMLVSDVMTWT--GKVRQVGRHGVVGEKESPLARA 343
>gi|212223365|ref|YP_002306601.1| DNA-directed RNA polymerase subunit A'' [Thermococcus onnurineus
NA1]
gi|226699349|sp|B6YT17.1|RPOA2_THEON RecName: Full=DNA-directed RNA polymerase subunit A''
gi|212008322|gb|ACJ15704.1| DNA-directed RNA polymerase, subunit A'' [Thermococcus onnurineus
NA1]
Length = 391
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 69/144 (47%), Gaps = 20/144 (13%)
Query: 3 TNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 62
+N K +LK G+ D + N+IH +A GIEAA II E+ N
Sbjct: 248 SNFKQILKVPGV------------DPTRTRTNNIHEIAEVLGIEAARNAIIEEIVNTMRD 295
Query: 63 YGIEVDPRHLSLVADYMTHSEFDLIIM-VSKSWMLDEVKSTTARSVTPACEPNSHHDVKK 121
G+EVD RH+ LVAD MT D +I+ + + ++ E S AR+ A E + H +
Sbjct: 296 QGLEVDVRHIMLVADMMT---LDGVILPIGRHGIVGEKASVLARA---AFEITTQHLFEA 349
Query: 122 IEFKKQNKILPLVLQNSLTGSSYP 145
E + + L V++N L G P
Sbjct: 350 AE-RGETDPLNGVVENVLIGQPVP 372
>gi|308159479|gb|EFO62008.1| RNA polymerase AI large subunit [Giardia lamblia P15]
Length = 2148
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 38/58 (65%)
Query: 25 LLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHS 82
+++ + +Y N+I + YGIEAA II E+ VF Y IEVD RHLSL+AD MT S
Sbjct: 2023 IINFDNIYTNNISQIFEVYGIEAARNAIIEEIHRVFNTYHIEVDERHLSLIADSMTLS 2080
>gi|70606494|ref|YP_255364.1| DNA-directed RNA polymerase subunit A'' [Sulfolobus acidocaldarius
DSM 639]
gi|449066706|ref|YP_007433788.1| DNA-directed RNA polymerase subunit A'' [Sulfolobus acidocaldarius
N8]
gi|449068980|ref|YP_007436061.1| DNA-directed RNA polymerase subunit A'' [Sulfolobus acidocaldarius
Ron12/I]
gi|73920764|sp|P11514.2|RPOA2_SULAC RecName: Full=DNA-directed RNA polymerase subunit A'';
Short=Subunit C
gi|68567142|gb|AAY80071.1| DNA-directed RNA polymerase subunit A'' [Sulfolobus acidocaldarius
DSM 639]
gi|449035214|gb|AGE70640.1| DNA-directed RNA polymerase subunit A'' [Sulfolobus acidocaldarius
N8]
gi|449037488|gb|AGE72913.1| DNA-directed RNA polymerase subunit A'' [Sulfolobus acidocaldarius
Ron12/I]
Length = 393
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
++++ TDG N+ I + D+NK+ N+IH + GIEAA +I RE+K V G+
Sbjct: 246 EYVIITDGSNLEGIMNVTGV-DINKIQTNNIHEVEEVLGIEAARELISREIKKVLEEQGL 304
Query: 66 EVDPRHLSLVADYMTHS 82
+VD RH+ LV+D MT +
Sbjct: 305 DVDMRHIVLVSDIMTRT 321
>gi|449328924|gb|AGE95199.1| DNA-directed RNA polymerase I [Encephalitozoon cuniculi]
Length = 1395
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
Query: 22 YRHLLDLNKLY---VNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADY 78
Y LLD+ +Y NDI+ + T G+EAA II EV VF VYGI +D RHL L+ADY
Sbjct: 1258 YEDLLDILDIYNAESNDIYGVYLTLGVEAARHAIINEVVKVFDVYGISIDIRHLLLIADY 1317
Query: 79 MTH 81
MT
Sbjct: 1318 MTR 1320
>gi|330038842|ref|XP_003239717.1| DNA-directed RNA polymerase I chain-like protein [Cryptomonas
paramecium]
gi|327206641|gb|AEA38819.1| DNA-directed RNA polymerase I chain-like protein [Cryptomonas
paramecium]
Length = 1458
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 45/71 (63%)
Query: 12 DGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRH 71
+GIN ++ + LL++NK++ NDI + YGIEA+ I E++ +F + I ++ H
Sbjct: 1320 NGINFCFLWENADLLNINKIFTNDISEILLIYGIEASRAAIFLELETIFRIQAISINKHH 1379
Query: 72 LSLVADYMTHS 82
+ L++DYMT S
Sbjct: 1380 IDLISDYMTKS 1390
>gi|19074219|ref|NP_584825.1| DNA-DIRECTED RNA POLYMERASE I [Encephalitozoon cuniculi GB-M1]
gi|19068861|emb|CAD25329.1| DNA-DIRECTED RNA POLYMERASE I [Encephalitozoon cuniculi GB-M1]
Length = 1395
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
Query: 22 YRHLLDLNKLY---VNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADY 78
Y LLD+ +Y NDI+ + T G+EAA II EV VF VYGI +D RHL L+ADY
Sbjct: 1258 YEDLLDILDIYNAESNDIYDVYLTLGVEAARHAIINEVVKVFDVYGISIDIRHLLLIADY 1317
Query: 79 MTH 81
MT
Sbjct: 1318 MTR 1320
>gi|339237703|ref|XP_003380406.1| RNA polymerase Rpb1, domain 5 superfamily [Trichinella spiralis]
gi|316976752|gb|EFV59978.1| RNA polymerase Rpb1, domain 5 superfamily [Trichinella spiralis]
Length = 1728
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 56/97 (57%), Gaps = 16/97 (16%)
Query: 2 ETNGKHLLKTDGINVN------YISQYRHLLDL--NKLYVNDIHYMASTYGIEAA----- 48
E NG+ L T+GIN+ +I ++ +L L ++ Y+ I + +TY A
Sbjct: 1553 EQNGELFLITEGINLKVLDDEVFIGFFKPVLCLLNDRTYLMWIVSIVTTYTPWLACMALR 1612
Query: 49 ---NRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHS 82
NR+ E KNVFA YGIEVD RHLSL++DYMTH+
Sbjct: 1613 RRLNRLSESETKNVFASYGIEVDHRHLSLLSDYMTHT 1649
>gi|296413787|ref|XP_002836590.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295630418|emb|CAZ80781.1| unnamed protein product [Tuber melanosporum]
Length = 1056
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 43/77 (55%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
K L +G+N + + +D N L NDI YG+EAA II+E+ VF +GI
Sbjct: 901 KCKLAVEGVNFSAFWNEQESIDPNTLETNDIAAFLRVYGVEAARGNIIKEMNAVFGGHGI 960
Query: 66 EVDPRHLSLVADYMTHS 82
V+ RHL+L+AD MT
Sbjct: 961 SVNIRHLNLIADTMTRG 977
>gi|307595332|ref|YP_003901649.1| DNA-directed RNA polymerase subunit A'' [Vulcanisaeta distributa
DSM 14429]
gi|307550533|gb|ADN50598.1| DNA-directed RNA polymerase, subunit A'' [Vulcanisaeta distributa
DSM 14429]
Length = 391
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 3/103 (2%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
+G+ +++T+G N+ + + D + NDIH +A GIEAA VI+RE+K V
Sbjct: 244 DGEWIIETEGTNLEAVLTIDGV-DYRRTISNDIHEVAEVLGIEAARTVIMRELKKVLDQQ 302
Query: 64 GIEVDPRHLSLVADYMTHSEFDLIIMVSKSWMLDEVKSTTARS 106
G++ D RHL L++D MT + + V + ++ E +S AR+
Sbjct: 303 GLDTDIRHLMLISDVMTWT--GRVRQVGRHGVVGEKESPLARA 343
>gi|124028421|ref|YP_001013741.1| DNA-directed RNA polymerase subunit A'' [Hyperthermus butylicus DSM
5456]
gi|123979115|gb|ABM81396.1| DNA-directed RNA polymerase subunit A'' [Hyperthermus butylicus DSM
5456]
Length = 424
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
++ L T+G N+ + + + D ++Y N IH + GIEAA ++IRE+K+V G+
Sbjct: 262 EYFLVTEGSNLKEVLEVPGV-DPRRIYTNSIHEIEEVLGIEAARTMLIREMKDVLDEQGL 320
Query: 66 EVDPRHLSLVADYMTHS 82
+VD RHL LVAD MT +
Sbjct: 321 DVDIRHLMLVADIMTMT 337
>gi|46671|emb|CAA32926.1| RNA polymerase subunit C (AA 1-392) [Sulfolobus acidocaldarius]
Length = 392
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
++++ TDG N+ I + D+NK+ N+IH + G+EAA +I RE+K V G+
Sbjct: 245 EYVIITDGSNLEGIMNVTGV-DINKIQTNNIHEVEEVLGMEAARELISREIKKVLEEQGL 303
Query: 66 EVDPRHLSLVADYMTHS 82
+VD RH+ LV+D MT +
Sbjct: 304 DVDMRHIVLVSDIMTRT 320
>gi|312136874|ref|YP_004004211.1| DNA-directed RNA polymerase, subunit a' [Methanothermus fervidus
DSM 2088]
gi|311224593|gb|ADP77449.1| DNA-directed RNA polymerase, subunit A' [Methanothermus fervidus
DSM 2088]
Length = 385
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 64/135 (47%), Gaps = 7/135 (5%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
T+G N++ I + + D + NDIH + GIEAA IIRE KN G+ VD R
Sbjct: 240 TEGSNLSKILKMDGV-DKTRTTTNDIHEIEKVLGIEAARNAIIREAKNTLEEQGLTVDIR 298
Query: 71 HLSLVADYMTHSEFDLIIMVSKSWMLDEVKSTTARSVTPACEPNSHHDVKKIEFKKQNKI 130
H+ LVAD MT I + + + E S AR+ A E S H + + + +
Sbjct: 299 HIMLVADLMTSD--GTIKPIGRHGVSGEKASVLARA---AFEETSKH-LLQASMRGEKDR 352
Query: 131 LPLVLQNSLTGSSYP 145
L + +N + G P
Sbjct: 353 LAGITENVIVGQPIP 367
>gi|160331837|ref|XP_001712625.1| rpb1 [Hemiselmis andersenii]
gi|159766074|gb|ABW98300.1| rpb1 [Hemiselmis andersenii]
Length = 1464
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 1 METNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 60
++ N +++L T+G+++ YI Y + D + NDI + GIEA +++I+E++N+
Sbjct: 1312 IKNNEEYVLDTEGVDLRYILNYSGI-DYTRCSSNDILEIYKILGIEAVRKILIQELRNLI 1370
Query: 61 AVYGIEVDPRHLSLVADYMTH 81
+ G V+ RHLSL+ D MTH
Sbjct: 1371 SFDGSYVNSRHLSLLVDVMTH 1391
>gi|119872215|ref|YP_930222.1| DNA-directed RNA polymerase subunit A'' [Pyrobaculum islandicum DSM
4184]
gi|119673623|gb|ABL87879.1| DNA-directed RNA polymerase, subunit A' [Pyrobaculum islandicum DSM
4184]
Length = 379
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
NG+ + T+G N+ + Q + D + Y ND+H + GIEA ++ +E+K V
Sbjct: 233 NGEWYIITEGTNLEAVLQLEEV-DATRTYSNDLHEVEEVLGIEATRTLVAQEIKRVLDEQ 291
Query: 64 GIEVDPRHLSLVADYMTHS 82
G++VD RH+ LVAD MT S
Sbjct: 292 GLDVDIRHMYLVADAMTWS 310
>gi|402468123|gb|EJW03320.1| hypothetical protein EDEG_02328 [Edhazardia aedis USNM 41457]
Length = 1776
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 36/54 (66%)
Query: 27 DLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMT 80
+L Y NDIH + + GIEA VI+ E+K VF YGI V+ RHL L+AD+MT
Sbjct: 1647 ELMNTYSNDIHNVNLSLGIEACRSVIVNEIKTVFNAYGITVNIRHLLLIADFMT 1700
>gi|337283879|ref|YP_004623353.1| DNA-directed RNA polymerase subunit A [Pyrococcus yayanosii CH1]
gi|334899813|gb|AEH24081.1| DNA-directed RNA polymerase subunit A [Pyrococcus yayanosii CH1]
Length = 396
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 69/146 (47%), Gaps = 20/146 (13%)
Query: 3 TNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 62
+N K +LK G+ D + N+IH +A GIEAA II E+ N
Sbjct: 250 SNFKQVLKVPGV------------DPTRTRTNNIHEIAEVLGIEAARNAIIEEIVNTMRE 297
Query: 63 YGIEVDPRHLSLVADYMTHSEFDLIIM-VSKSWMLDEVKSTTARSVTPACEPNSHHDVKK 121
G+EVD RH+ LVAD MT D I+ + + ++ E +S AR+ A E + H +
Sbjct: 298 QGLEVDIRHIMLVADIMT---LDGIVRPIGRHGVVGEKESVLARA---AFEITTQHLFEA 351
Query: 122 IEFKKQNKILPLVLQNSLTGSSYPAN 147
E + + L V++N L G P
Sbjct: 352 AERGEIDN-LNGVIENVLIGQPVPVG 376
>gi|146302820|ref|YP_001190136.1| DNA-directed RNA polymerase subunit A'' [Metallosphaera sedula DSM
5348]
gi|172046881|sp|A4YCR0.1|RPOA2_METS5 RecName: Full=DNA-directed RNA polymerase subunit A''
gi|145701070|gb|ABP94212.1| DNA-directed RNA polymerase, subunit A' [Metallosphaera sedula DSM
5348]
Length = 392
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
++++ TDG N+ + + + D++++ N++H + S G+EAA +I RE+K V G+
Sbjct: 245 EYVIITDGSNLEGVLGVKGV-DVSRIETNNLHEVESVLGVEAARELITREIKRVLEEQGL 303
Query: 66 EVDPRHLSLVADYMTHS 82
+VD RH+ LV+D MT +
Sbjct: 304 DVDIRHIELVSDIMTRT 320
>gi|390960611|ref|YP_006424445.1| DNA-directed RNA polymerase subunit A'' [Thermococcus sp. CL1]
gi|390518919|gb|AFL94651.1| DNA-directed RNA polymerase subunit A'' [Thermococcus sp. CL1]
Length = 391
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 70/148 (47%), Gaps = 24/148 (16%)
Query: 3 TNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 62
+N K +LK G+ D + N+I +A GIEAA II E+ N
Sbjct: 248 SNFKQVLKVPGV------------DPTRTRTNNIWEIAEVLGIEAARNAIIEEIVNTMRE 295
Query: 63 YGIEVDPRHLSLVADYMTHSEFDLIIM-VSKSWMLDEVKSTTARSVTPACEPNSHHDVKK 121
G+EVD RH+ LVAD MT D +I+ + + ++ E S AR+ A E + H
Sbjct: 296 QGLEVDVRHIMLVADMMT---LDGVILPIGRHGIVGEKASVLARA---AFEITTQH---L 346
Query: 122 IEFKKQNKILPL--VLQNSLTGSSYPAN 147
E ++ ++ PL V++N L G P
Sbjct: 347 FEAAERGEVDPLNGVVENVLIGQPVPVG 374
>gi|389860842|ref|YP_006363082.1| DNA-directed RNA polymerase subunit A' [Thermogladius
cellulolyticus 1633]
gi|388525746|gb|AFK50944.1| DNA-directed RNA polymerase subunit A' [Thermogladius
cellulolyticus 1633]
Length = 403
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
+++L +G N+ + + + + D K+Y NDI + T GIEAA IIRE+K++ G+
Sbjct: 249 EYVLIAEGSNLPEVMRIKGV-DWRKVYTNDIMEIERTLGIEAARAAIIREIKSILDDQGL 307
Query: 66 EVDPRHLSLVADYMT 80
+VD RH+ L+AD MT
Sbjct: 308 DVDIRHIMLLADVMT 322
>gi|315230007|ref|YP_004070443.1| DNA-directed RNA polymerase subunit A'' [Thermococcus barophilus
MP]
gi|315183035|gb|ADT83220.1| DNA-directed RNA polymerase subunit A'' [Thermococcus barophilus
MP]
Length = 394
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 69/148 (46%), Gaps = 24/148 (16%)
Query: 3 TNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 62
+N K +LK G+ D + N+IH +A GIEAA II E+ N
Sbjct: 250 SNFKQVLKVPGV------------DPTRTRTNNIHEIAEVLGIEAARNAIIEEIVNTMQE 297
Query: 63 YGIEVDPRHLSLVADYMTHSEFDLIIM-VSKSWMLDEVKSTTARSVTPACEPNSHHDVKK 121
G+EVD RH+ LVAD MT D I+ + + ++ + S AR+ A E H
Sbjct: 298 QGLEVDVRHIMLVADIMT---LDGIVRPIGRHGVVGDPASVLARA---AFEITVQH---L 348
Query: 122 IEFKKQNKILPL--VLQNSLTGSSYPAN 147
E ++ ++ PL V++N L G P
Sbjct: 349 FEAAERGEVDPLNGVVENVLIGQPVPVG 376
>gi|408402779|ref|YP_006860762.1| DNA-directed RNA polymerase subunit A [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|300521498|gb|ADK25960.1| RNA polymerase A [Candidatus Nitrososphaera gargensis]
gi|408363375|gb|AFU57105.1| DNA-directed RNA polymerase subunit A [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 1273
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 6/120 (5%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSEFD 85
+DL ++ N+++ + T GIEAA +I+E+ N G+EVD RH+ LVAD MT +
Sbjct: 1136 VDLTRVTTNNVYEIWQTLGIEAARTALIKEITNTLEEQGLEVDTRHIMLVADLMTSKGY- 1194
Query: 86 LIIMVSKSWMLDEVKSTTARSVTPACEPNSHHDVKKIEFKKQNKILPLVLQNSLTGSSYP 145
+ + + + S AR+ P + + + Q + L V +N + G++ P
Sbjct: 1195 -LQQIGRHGIAGTKTSVLARAAFEITVPT----IARASLEGQIETLKGVTENVIVGATVP 1249
>gi|340501189|gb|EGR27999.1| RNA polymerase ii subunit, putative [Ichthyophthirius multifiliis]
Length = 1103
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 3 TNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 62
T+ + + KT G N+ I + + D + Y NDI +A GIEAA + II E++ V
Sbjct: 768 TDKETIFKTSGTNLKKIIKIDGV-DSQRTYSNDIQEIAKVIGIEAARKSIINEIREVIEP 826
Query: 63 YGIEVDPRHLSLVADYMT 80
Y I ++ RHLS++AD+MT
Sbjct: 827 YDIYINYRHLSILADWMT 844
>gi|332796430|ref|YP_004457930.1| DNA-directed RNA polymerase subunit A'' [Acidianus hospitalis W1]
gi|332694165|gb|AEE93632.1| DNA-directed RNA polymerase, subunit A'' [Acidianus hospitalis W1]
Length = 392
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
++++ TDG N+ + + + D++++ N++H + + GIEAA +I RE+K V G+
Sbjct: 245 EYVIITDGSNLEGVLGIKGV-DVSRIETNNLHEVENVLGIEAARELITREIKKVLDDQGL 303
Query: 66 EVDPRHLSLVADYMTHS 82
+VD RH+ LVAD MT +
Sbjct: 304 DVDIRHVELVADIMTRT 320
>gi|330038381|ref|XP_003239581.1| DNA-directed RNA polymerase II largest chain [Cryptomonas paramecium]
gi|327206505|gb|AEA38683.1| DNA-directed RNA polymerase II largest chain [Cryptomonas paramecium]
Length = 1452
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
+ + +L T+GI++ Y+ +++D + NDI T+GIEAA +++I+E+KN+ +
Sbjct: 1305 SSEFILDTEGIDLKYVLNC-NIVDPTRTVSNDILETFKTFGIEAARKILIKEIKNLISFD 1363
Query: 64 GIEVDPRHLSLVADYMTHS 82
G V+ RH+ L+AD MTH
Sbjct: 1364 GSYVNFRHIFLLADIMTHG 1382
>gi|167044137|gb|ABZ08820.1| putative RNA polymerase Rpb1, domain 2 [uncultured marine
crenarchaeote HF4000_APKG5C13]
Length = 1268
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 69/144 (47%), Gaps = 7/144 (4%)
Query: 2 ETNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
E NG L++T G N+ + + + D N + N++ +++ GIEAA +I E+K
Sbjct: 1116 EENGDWLIQTTGSNLAKVISVKGV-DRNNVRTNNVFEISTVLGIEAARTSLINELKATLE 1174
Query: 62 VYGIEVDPRHLSLVADYMTHSEFDLIIMVSKSWMLDEVKSTTARSVTPACEPNSHHDVKK 121
G+EVD R+L LVAD M H + + + + + S AR+ P + K
Sbjct: 1175 NQGLEVDVRYLMLVADLMCHKGY--LQQIGRHGIAGSKDSVLARAAFEITVPTIANAAKL 1232
Query: 122 IEFKKQNKILPLVLQNSLTGSSYP 145
E +K L + +N + GS P
Sbjct: 1233 GEVEK----LKGITENVIVGSLIP 1252
>gi|171186407|ref|YP_001795326.1| DNA-directed RNA polymerase subunit A'' [Pyrobaculum neutrophilum
V24Sta]
gi|170935619|gb|ACB40880.1| DNA-directed RNA polymerase, subunit A'' [Pyrobaculum neutrophilum
V24Sta]
Length = 379
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
T+G N+ + Q + D ++ Y ND+H + GIEAA ++ +E+K V G++VD R
Sbjct: 240 TEGSNLEAVLQLEEV-DQSRTYSNDLHEVEEVLGIEAARALVAQEIKRVLEEQGLDVDIR 298
Query: 71 HLSLVADYMTHS 82
H+ LVAD MT S
Sbjct: 299 HMYLVADTMTWS 310
>gi|440494611|gb|ELQ76976.1| RNA polymerase I, large subunit [Trachipleistophora hominis]
Length = 190
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/47 (59%), Positives = 32/47 (68%)
Query: 34 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMT 80
NDI+ GIEA VIIREV+ VF YGIE+D RHL L+AD MT
Sbjct: 70 NDIYNTWEVLGIEACRAVIIREVRAVFQAYGIEIDIRHLMLIADKMT 116
>gi|41615213|ref|NP_963711.1| DNA-directed RNA polymerase subunit A'' [Nanoarchaeum equitans
Kin4-M]
gi|40068937|gb|AAR39272.1| NEQ427 [Nanoarchaeum equitans Kin4-M]
Length = 374
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
N + ++KT G N+ + + + + D + NDIH +A GI+AA II E++ V
Sbjct: 216 NDELVIKTFGSNLKEVLKMKGI-DKTRTTTNDIHEIAKVLGIDAAREAIIEEIQKVLEEQ 274
Query: 64 GIEVDPRHLSLVADYMTH 81
G+E+D R+L L+AD MT+
Sbjct: 275 GLEIDVRYLLLIADVMTY 292
>gi|315426617|dbj|BAJ48245.1| DNA-directed RNA polymerase subunit A', partial [Candidatus
Caldiarchaeum subterraneum]
Length = 283
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
+++++T+G N+ + + + D ++ NDI+ +A +GIEAA I+ E K V G+
Sbjct: 135 EYVIRTEGSNLREVMEVPGV-DWRRIKTNDIYEIAEVFGIEAARNAIVEEAKAVLEDQGL 193
Query: 66 EVDPRHLSLVADYMTHS 82
+VD RHL L+AD MT S
Sbjct: 194 DVDIRHLLLLADMMTVS 210
>gi|389852851|ref|YP_006355085.1| DNA-directed RNA polymerase subunit A'' [Pyrococcus sp. ST04]
gi|388250157|gb|AFK23010.1| DNA-directed RNA polymerase subunit A'' [Pyrococcus sp. ST04]
Length = 396
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 68/146 (46%), Gaps = 20/146 (13%)
Query: 3 TNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 62
+N K +LK G+ D + N+IH +A GIEAA II E+ N
Sbjct: 250 SNFKQVLKVPGV------------DPTRTKTNNIHEIAEVLGIEAARNAIIEEIVNTMRE 297
Query: 63 YGIEVDPRHLSLVADYMTHSEFDLIIM-VSKSWMLDEVKSTTARSVTPACEPNSHHDVKK 121
G+EVD RH+ LVAD MT D ++ + + ++ E S AR+ A E + H +
Sbjct: 298 QGLEVDIRHIMLVADIMT---LDGVVRPIGRHGVVGEKASVLARA---AFEITTQHLFEA 351
Query: 122 IEFKKQNKILPLVLQNSLTGSSYPAN 147
E + + L V++N L G P
Sbjct: 352 AERGEVDN-LNGVIENVLIGQPVPVG 376
>gi|315425378|dbj|BAJ47044.1| DNA-directed RNA polymerase subunit A [Candidatus Caldiarchaeum
subterraneum]
gi|315426559|dbj|BAJ48189.1| DNA-directed RNA polymerase subunit A' [Candidatus Caldiarchaeum
subterraneum]
gi|343485295|dbj|BAJ50949.1| DNA-directed RNA polymerase subunit A' [Candidatus Caldiarchaeum
subterraneum]
Length = 1254
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
+++++T+G N+ + + + D ++ NDI+ +A +GIEAA I+ E K V G+
Sbjct: 1106 EYVIRTEGSNLREVMEVPGV-DWRRIKTNDIYEIAEVFGIEAARNAIVEEAKAVLEDQGL 1164
Query: 66 EVDPRHLSLVADYMTHS 82
+VD RHL L+AD MT S
Sbjct: 1165 DVDIRHLLLLADMMTVS 1181
>gi|167043884|gb|ABZ08573.1| putative RNA polymerase Rpb1, domain 2 [uncultured marine
crenarchaeote HF4000_APKG3E18]
Length = 1273
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 70/144 (48%), Gaps = 7/144 (4%)
Query: 2 ETNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
E NG L++T G N+ + + + D N + N++ +++ GIEAA +I E+K+
Sbjct: 1121 EENGDWLIQTTGSNLAKVISVKGV-DKNNVRTNNVFEISTVLGIEAARTSLINELKSTLE 1179
Query: 62 VYGIEVDPRHLSLVADYMTHSEFDLIIMVSKSWMLDEVKSTTARSVTPACEPNSHHDVKK 121
G+EVD R+L LVAD M H + + + + + S AR+ P + K
Sbjct: 1180 NQGLEVDVRYLMLVADLMCHKGY--LQQIGRHGIAGSKDSVLARAAFEITVPTIANAAKL 1237
Query: 122 IEFKKQNKILPLVLQNSLTGSSYP 145
E ++ L + +N + GS P
Sbjct: 1238 GEIEE----LKGITENVIVGSLIP 1257
>gi|14520832|ref|NP_126307.1| DNA-directed RNA polymerase subunit A'' [Pyrococcus abyssi GE5]
gi|14548247|sp|Q9V113.1|RPOA2_PYRAB RecName: Full=DNA-directed RNA polymerase subunit A''
gi|5458048|emb|CAB49538.1| rpoA2 DNA-directed RNA polymerase, subunit A'' [Pyrococcus abyssi
GE5]
gi|380741374|tpe|CCE70008.1| TPA: DNA-directed RNA polymerase subunit A'' [Pyrococcus abyssi
GE5]
Length = 397
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 67/146 (45%), Gaps = 20/146 (13%)
Query: 3 TNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 62
+N K +LK G+ D + N+IH +A GIEAA II E+ N
Sbjct: 250 SNFKQVLKVPGV------------DPTRTKTNNIHEIAEVLGIEAARNAIIEEIMNTMRE 297
Query: 63 YGIEVDPRHLSLVADYMTHSEFDLIIM-VSKSWMLDEVKSTTARSVTPACEPNSHHDVKK 121
G+EVD RH+ LVAD MT D ++ + + ++ E S AR+ A E H +
Sbjct: 298 QGLEVDIRHIMLVADIMT---LDGVVRPIGRHGVVGEKASVLARA---AFEITVQHLFEA 351
Query: 122 IEFKKQNKILPLVLQNSLTGSSYPAN 147
E + + L V++N L G P
Sbjct: 352 AERGEVDN-LSGVIENVLIGQPVPVG 376
>gi|223478062|ref|YP_002582842.1| DNA-directed RNA polymerase subunit A'' [Thermococcus sp. AM4]
gi|214033288|gb|EEB74115.1| DNA-directed RNA polymerase subunit A'' [Thermococcus sp. AM4]
Length = 391
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 69/148 (46%), Gaps = 24/148 (16%)
Query: 3 TNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 62
+N K +LK G+ D + N+I +A GIEAA II E+ N
Sbjct: 248 SNFKQVLKVPGV------------DPTRTRTNNIWEIADVLGIEAARNAIIEEIVNTMRE 295
Query: 63 YGIEVDPRHLSLVADYMTHSEFDLIIM-VSKSWMLDEVKSTTARSVTPACEPNSHHDVKK 121
G+EVD RH+ LVAD MT D +I + + ++ E S AR+ A E + H
Sbjct: 296 QGLEVDIRHIMLVADMMT---LDGVIRPIGRHGIVGEKSSVLARA---AFEITTQH---L 346
Query: 122 IEFKKQNKILPL--VLQNSLTGSSYPAN 147
E ++ ++ PL V++N L G P
Sbjct: 347 FEAAERGEVDPLNGVVENVLIGQPVPVG 374
>gi|167044066|gb|ABZ08751.1| putative RNA polymerase Rpb1, domain 2, partial [uncultured marine
crenarchaeote HF4000_APKG4H17]
Length = 993
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 7/144 (4%)
Query: 2 ETNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
E NG+ L++T G N+ + + + D N + N++ +++ GIEAA +I E+K
Sbjct: 841 EENGEWLIQTTGSNLAEVLSVKGV-DRNNVRTNNVFEISTVLGIEAARNSLINELKGTLE 899
Query: 62 VYGIEVDPRHLSLVADYMTHSEFDLIIMVSKSWMLDEVKSTTARSVTPACEPNSHHDVKK 121
G+EVD R+L LVAD M H + + + + S AR+ P + K
Sbjct: 900 NQGLEVDIRYLMLVADLMCHKGH--LQQIGRHGIAGTKDSVLARAAFEITVPTIANAAKL 957
Query: 122 IEFKKQNKILPLVLQNSLTGSSYP 145
E ++ L + +N + GS P
Sbjct: 958 GEIEE----LKGITENVIVGSQIP 977
>gi|240103981|ref|YP_002960290.1| DNA-directed RNA polymerase subunit A'' [Thermococcus gammatolerans
EJ3]
gi|259494163|sp|C5A207.1|RPOA2_THEGJ RecName: Full=DNA-directed RNA polymerase subunit A''
gi|239911535|gb|ACS34426.1| DNA-directed RNA polymerase subunit A' (rpoA2) [Thermococcus
gammatolerans EJ3]
Length = 391
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 69/148 (46%), Gaps = 24/148 (16%)
Query: 3 TNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 62
+N K +LK G+ D + N+I +A GIEAA II E+ N
Sbjct: 248 SNFKQVLKVPGV------------DPTRTRTNNIWEIADVLGIEAARNAIIEEIVNTMRE 295
Query: 63 YGIEVDPRHLSLVADYMTHSEFDLIIM-VSKSWMLDEVKSTTARSVTPACEPNSHHDVKK 121
G+EVD RH+ LVAD MT D +I + + ++ E S AR+ A E + H
Sbjct: 296 QGLEVDIRHIMLVADMMT---LDGVIRPIGRHGIVGEKSSVLARA---AFEITTQH---L 346
Query: 122 IEFKKQNKILPL--VLQNSLTGSSYPAN 147
E ++ ++ PL V++N L G P
Sbjct: 347 FEAAERGEVDPLNGVVENVLIGQPVPVG 374
>gi|379005504|ref|YP_005261176.1| DNA-directed RNA polymerase, subunit A'''' [Pyrobaculum oguniense
TE7]
gi|375160957|gb|AFA40569.1| DNA-directed RNA polymerase, subunit A'''' [Pyrobaculum oguniense
TE7]
Length = 379
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
T+G N+ + Q + D + Y ND+H + GIEAA ++ +E+K V G++VD R
Sbjct: 240 TEGTNLEAVLQLEEV-DATRTYSNDLHEVEEVLGIEAARALVAQEIKRVLDEQGLDVDIR 298
Query: 71 HLSLVADYMTHS 82
H+ +VAD MT S
Sbjct: 299 HMYMVADTMTWS 310
>gi|341581878|ref|YP_004762370.1| DNA-directed RNA polymerase subunit A'' [Thermococcus sp. 4557]
gi|340809536|gb|AEK72693.1| DNA-directed RNA polymerase subunit A'' [Thermococcus sp. 4557]
Length = 391
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 69/146 (47%), Gaps = 24/146 (16%)
Query: 3 TNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 62
+N K +LK G+ D + N+I +A GIEAA II E+ N
Sbjct: 248 SNFKQVLKVPGV------------DPTRTRTNNIWEIADVLGIEAARNAIIEEIVNTMRE 295
Query: 63 YGIEVDPRHLSLVADYMTHSEFDLIIM-VSKSWMLDEVKSTTARSVTPACEPNSHHDVKK 121
G+EVD RH+ LVAD MT D +I+ + + ++ E S AR+ A E + H +
Sbjct: 296 QGLEVDVRHIMLVADMMT---LDGVILPIGRHGIVGEKASVLARA---AFEITTQHLFEA 349
Query: 122 IEFKKQNKILPL--VLQNSLTGSSYP 145
E ++ PL V++N L G P
Sbjct: 350 AERGDED---PLNGVVENVLIGQPVP 372
>gi|297527623|ref|YP_003669647.1| DNA-directed RNA polymerase subunit A'' [Staphylothermus hellenicus
DSM 12710]
gi|297256539|gb|ADI32748.1| DNA-directed RNA polymerase, subunit A'' [Staphylothermus
hellenicus DSM 12710]
Length = 421
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSEFD 85
+D K+Y N+I + GIEAA IIRE KNV G++VD RHL L+AD MT +
Sbjct: 268 VDYRKVYTNNIAEIEEILGIEAARAAIIRETKNVLEDQGLDVDIRHLILLADMMTWT--G 325
Query: 86 LIIMVSKSWMLDEVKSTTARS 106
I V + + E S AR+
Sbjct: 326 KIRQVGRMGIAGEKPSVLARA 346
>gi|145592517|ref|YP_001154519.1| DNA-directed RNA polymerase subunit A'' [Pyrobaculum arsenaticum
DSM 13514]
gi|145284285|gb|ABP51867.1| DNA-directed RNA polymerase, subunit A' [Pyrobaculum arsenaticum
DSM 13514]
Length = 379
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
T+G N+ + Q + D + Y ND+H + GIEAA ++ +E+K V G++VD R
Sbjct: 240 TEGTNLEAVLQLEEV-DATRTYSNDLHEVEEVLGIEAARALVAQEIKRVLDEQGLDVDIR 298
Query: 71 HLSLVADYMTHS 82
H+ +VAD MT S
Sbjct: 299 HMYMVADTMTWS 310
>gi|242398381|ref|YP_002993805.1| DNA-directed RNA polymerase subunit A'' [Thermococcus sibiricus MM
739]
gi|242264774|gb|ACS89456.1| DNA-directed RNA polymerase subunit A'' [Thermococcus sibiricus MM
739]
Length = 397
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 69/148 (46%), Gaps = 24/148 (16%)
Query: 3 TNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 62
+N K +LK G+ D + N+IH +A GIEAA II E+ N
Sbjct: 252 SNFKQVLKVPGV------------DPTRTKTNNIHEIAQVLGIEAARNAIIEEIVNTMQE 299
Query: 63 YGIEVDPRHLSLVADYMTHSEFDLIIM-VSKSWMLDEVKSTTARSVTPACEPNSHHDVKK 121
G+EVD RH+ LVAD MT D ++ + + ++ S AR+ A E H ++
Sbjct: 300 QGLEVDVRHIMLVADMMT---IDGVVRPIGRHGIVGTKASVLARA---AFEITVQHLLQA 353
Query: 122 IEFKKQNKILPL--VLQNSLTGSSYPAN 147
E + ++ PL V++N L G P
Sbjct: 354 AE---RGELDPLNGVVENVLIGQPVPVG 378
>gi|126465704|ref|YP_001040813.1| DNA-directed RNA polymerase subunit A'' [Staphylothermus marinus
F1]
gi|126014527|gb|ABN69905.1| DNA-directed RNA polymerase, subunit A' [Staphylothermus marinus
F1]
Length = 421
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSEFD 85
+D K+Y N+I + GIEAA IIRE KNV G++VD RHL L+AD MT +
Sbjct: 268 VDYRKVYTNNIAEIEEILGIEAARAAIIRETKNVLEDQGLDVDIRHLILLADMMTWT--G 325
Query: 86 LIIMVSKSWMLDEVKSTTARS 106
I V + + E S AR+
Sbjct: 326 KIRQVGRMGIAGEKPSVLARA 346
>gi|352682851|ref|YP_004893375.1| DNA-directed RNA polymerase subunit A'' [Thermoproteus tenax Kra 1]
gi|350275650|emb|CCC82297.1| DNA-directed RNA polymerase subunit A'' [Thermoproteus tenax Kra 1]
Length = 378
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
G+ + T+G N+ + Q + D + Y ND+H +A GIE A +I+ E++ V
Sbjct: 232 TGEWYIVTEGTNLEGVLQLEEV-DYTRTYSNDLHEVAEVLGIEVARTLIMSEIRRVLVDQ 290
Query: 64 GIEVDPRHLSLVADYMT 80
G++VD RH+ ++AD MT
Sbjct: 291 GLDVDVRHMYMIADAMT 307
>gi|399949602|gb|AFP65260.1| DNA-directed RNA polymerase I chain-like protein [Chroomonas
mesostigmatica CCMP1168]
Length = 1512
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
T+GIN + + L+D K++ N+I M + YGIEA ++ E+ +F + I V+
Sbjct: 1373 TEGINFYFFWKNSDLVDCEKIFTNNIFSMTTIYGIEAGRETLVYELSTIFKMQTISVNSH 1432
Query: 71 HLSLVADYMTHSEF 84
H+ L++DYM F
Sbjct: 1433 HIDLLSDYMMRLGF 1446
>gi|126460696|ref|YP_001056974.1| DNA-directed RNA polymerase subunit A'' [Pyrobaculum calidifontis
JCM 11548]
gi|126250417|gb|ABO09508.1| DNA-directed RNA polymerase, subunit A' [Pyrobaculum calidifontis
JCM 11548]
Length = 382
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
T+G N+ + Q + D + Y ND+H + GIEAA +I E+K V G++VD R
Sbjct: 243 TEGTNLEAVLQLEEV-DKARTYSNDLHEVEEVLGIEAARTLIAHEIKRVLDEQGLDVDIR 301
Query: 71 HLSLVADYMTHS 82
H+ LVAD MT S
Sbjct: 302 HMYLVADAMTWS 313
>gi|390939170|ref|YP_006402908.1| DNA-directed RNA polymerase subunit A'' [Desulfurococcus fermentans
DSM 16532]
gi|390192277|gb|AFL67333.1| DNA-directed RNA polymerase, subunit A'' [Desulfurococcus
fermentans DSM 16532]
Length = 406
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
++++ ++G N+ I + + D ++Y N+IH + GIEAA + II+E+K + G+
Sbjct: 247 EYVIISEGSNLEEIMRIEGV-DWRRVYTNNIHEIERVLGIEAARQAIIKEIKEILDDQGL 305
Query: 66 EVDPRHLSLVADYMT 80
+VD RH+ L+AD MT
Sbjct: 306 DVDIRHIMLLADMMT 320
>gi|218884684|ref|YP_002429066.1| DNA-directed RNA polymerase subunit A'' [Desulfurococcus
kamchatkensis 1221n]
gi|218766300|gb|ACL11699.1| DNA-directed RNA polymerase, subunit A'' [Desulfurococcus
kamchatkensis 1221n]
Length = 406
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
++++ ++G N+ I + + D ++Y N+IH + GIEAA + II+E+K + G+
Sbjct: 247 EYVIISEGSNLEEIMRIEGV-DWRRVYTNNIHEIERVLGIEAARQAIIKEIKEILDDQGL 305
Query: 66 EVDPRHLSLVADYMT 80
+VD RH+ L+AD MT
Sbjct: 306 DVDIRHIMLLADMMT 320
>gi|375083051|ref|ZP_09730089.1| DNA-directed RNA polymerase subunit A'' [Thermococcus litoralis DSM
5473]
gi|374742287|gb|EHR78687.1| DNA-directed RNA polymerase subunit A'' [Thermococcus litoralis DSM
5473]
Length = 394
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 68/148 (45%), Gaps = 24/148 (16%)
Query: 3 TNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 62
+N K +LK G+ D + N+IH +A GIEAA II E+
Sbjct: 250 SNFKQVLKVPGV------------DPTRTRTNNIHEIAEVLGIEAARNAIIEEITRTMQE 297
Query: 63 YGIEVDPRHLSLVADYMTHSEFDLIIM-VSKSWMLDEVKSTTARSVTPACEPNSHHDVKK 121
G+EVD RH+ LVAD MT D I+ + + ++ S AR+ A E H ++
Sbjct: 298 QGLEVDVRHIMLVADMMT---LDGIVRPIGRHGVVGTKASVLARA---AFEITVQHLLQA 351
Query: 122 IEFKKQNKILPL--VLQNSLTGSSYPAN 147
E + ++ PL V++N L G P
Sbjct: 352 AE---RGEVDPLNGVVENVLIGQPVPVG 376
>gi|332157773|ref|YP_004423052.1| DNA-directed RNA polymerase subunit A' [Pyrococcus sp. NA2]
gi|331033236|gb|AEC51048.1| DNA-directed RNA polymerase subunit A' [Pyrococcus sp. NA2]
Length = 397
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 67/146 (45%), Gaps = 20/146 (13%)
Query: 3 TNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 62
+N K +LK G+ D + N+IH +A GIEAA II E+ N
Sbjct: 250 SNFKQVLKVPGV------------DPTRTRTNNIHEIAEVLGIEAARNAIIEEIVNTMRE 297
Query: 63 YGIEVDPRHLSLVADYMTHSEFDLIIM-VSKSWMLDEVKSTTARSVTPACEPNSHHDVKK 121
G+EVD RH+ LVAD MT D ++ + + ++ E S AR+ A E H +
Sbjct: 298 QGLEVDIRHIMLVADIMT---LDGVVRPIGRHGVVGEKASVLARA---AFEITVQHLFEA 351
Query: 122 IEFKKQNKILPLVLQNSLTGSSYPAN 147
E + + L V++N L G P
Sbjct: 352 AERGEVDN-LNGVIENVLIGQPVPVG 376
>gi|14591327|ref|NP_143405.1| DNA-directed RNA polymerase subunit A'' [Pyrococcus horikoshii OT3]
gi|14548239|sp|O93777.1|RPOA2_PYRHO RecName: Full=DNA-directed RNA polymerase subunit A''
gi|3257972|dbj|BAA30655.1| 397aa long hypothetical DNA-directed RNA polymerase subunit A''
[Pyrococcus horikoshii OT3]
Length = 397
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 67/146 (45%), Gaps = 20/146 (13%)
Query: 3 TNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 62
+N K +LK G+ D + N+IH +A GIEAA II E+ N
Sbjct: 250 SNFKQVLKVPGV------------DPTRTRTNNIHEIAEVLGIEAARNAIIEEIINTMHE 297
Query: 63 YGIEVDPRHLSLVADYMTHSEFDLIIM-VSKSWMLDEVKSTTARSVTPACEPNSHHDVKK 121
G+EVD RH+ LVAD MT D ++ + + ++ E S AR+ A E H +
Sbjct: 298 QGLEVDIRHIMLVADIMT---LDGVVRPIGRHGVVGEKASVLARA---AFEITVQHLFEA 351
Query: 122 IEFKKQNKILPLVLQNSLTGSSYPAN 147
E + + L V++N L G P
Sbjct: 352 AERGEVDN-LSGVIENVLIGQPVPVG 376
>gi|18312087|ref|NP_558754.1| DNA-directed RNA polymerase subunit A'' [Pyrobaculum aerophilum
str. IM2]
gi|20978702|sp|Q8ZYQ7.1|RPOA2_PYRAE RecName: Full=DNA-directed RNA polymerase subunit A''
gi|18159517|gb|AAL62936.1| DNA-directed RNA polymerase subunit A'' (rpoA2) [Pyrobaculum
aerophilum str. IM2]
Length = 379
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
T+G N+ + Q + D + Y ND+H + GIEA ++ +E+K V G++VD R
Sbjct: 240 TEGTNLEAVLQLEEV-DPTRTYSNDLHEVEEVLGIEATRALVAQEIKRVLEEQGLDVDIR 298
Query: 71 HLSLVADYMTHS 82
H+ LVAD MT S
Sbjct: 299 HMYLVADAMTWS 310
>gi|385805644|ref|YP_005842042.1| DNA-directed RNA polymerase subunit A'' [Fervidicoccus fontis
Kam940]
gi|383795507|gb|AFH42590.1| DNA-directed RNA polymerase subunit A'' [Fervidicoccus fontis
Kam940]
Length = 409
Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 71/144 (49%), Gaps = 11/144 (7%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
++++ TDG N+ + + + + D + N ++ GIEAA +VII E+ NV G+
Sbjct: 245 EYVIVTDGSNLEQVLKVKGV-DPTRTRTNSVYETMMVLGIEAARKVIINEIMNVLREQGL 303
Query: 66 EVDPRHLSLVADYMTHSEFDLIIMVSKSWMLDEVKSTTARSVTPACEPNSHHDVKKIEFK 125
+VD RH+ LVAD MT + ++ + + + E +S AR+ A E + H E
Sbjct: 304 DVDVRHVYLVADIMTQT--GVVRQIGRHGVSGEKESFLARA---AFEMTTKH---LFEAS 355
Query: 126 KQNKI--LPLVLQNSLTGSSYPAN 147
Q K L V +N + G P
Sbjct: 356 TQGKTDELKGVTENVIVGQVIPVG 379
>gi|374633178|ref|ZP_09705545.1| DNA-directed RNA polymerase, subunit A'''' [Metallosphaera
yellowstonensis MK1]
gi|373524662|gb|EHP69539.1| DNA-directed RNA polymerase, subunit A'''' [Metallosphaera
yellowstonensis MK1]
Length = 397
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
++++ TDG N+ + + + D+ ++ N++H + + GIEA +I++E+K V G+
Sbjct: 251 EYVIITDGSNLEGVLGVKGI-DIRRIETNNLHEVENVLGIEAVRELIMKEIKRVLDEQGL 309
Query: 66 EVDPRHLSLVADYMTHS 82
+VD RH+ LV+D MT +
Sbjct: 310 DVDIRHIELVSDIMTRT 326
>gi|257076604|ref|ZP_05570965.1| DNA-directed RNA polymerase subunit A'' [Ferroplasma acidarmanus
fer1]
Length = 504
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSEFD 85
+D N+ NDI + + +GIEAA I RE +N + G+ VD RHL LVAD MT S
Sbjct: 376 VDSNRTTTNDIIEIENVFGIEAARNAIYREAENTLSEQGLNVDKRHLMLVADMMTFS--G 433
Query: 86 LIIMVSKSWMLDEVKSTTARSVTPACEPNSHHDVK 120
+ V + + S AR+ A E S H +K
Sbjct: 434 AVRAVGRQGISGRKSSVLARA---AFEITSKHLLK 465
>gi|71027119|ref|XP_763203.1| DNA-directed RNA polymerase II largest subunit [Theileria parva
strain Muguga]
gi|68350156|gb|EAN30920.1| DNA-directed RNA polymerase II largest subunit, putative [Theileria
parva]
Length = 1681
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L TDG N+ + +D K + ND+ + +GIEAA R ++RE++ V + G V
Sbjct: 1319 VLDTDGCNLESVLPIT-CVDYTKTFSNDVSEIFHVFGIEAARRALLREIRAVISFDGAYV 1377
Query: 68 DPRHLSLVADYMTHSEF 84
+ RHLSL+ D MT +
Sbjct: 1378 NYRHLSLLCDIMTQKGY 1394
>gi|85000327|ref|XP_954882.1| DNA-directed RNA polymerase II largest subunit [Theileria annulata
strain Ankara]
gi|65303028|emb|CAI75406.1| DNA-directed RNA polymerase II largest subunit, putative [Theileria
annulata]
Length = 1678
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L TDG N+ + +D K + ND+ + +GIEAA R ++RE++ V + G V
Sbjct: 1319 VLDTDGCNLESVLPIT-CVDYTKTFSNDVSEIFHVFGIEAARRALLREIRAVISFDGAYV 1377
Query: 68 DPRHLSLVADYMTHSEF 84
+ RHLSL+ D MT +
Sbjct: 1378 NYRHLSLLCDIMTQKGY 1394
>gi|167042230|gb|ABZ06962.1| putative RNA polymerase Rpb1, domain 2 [uncultured marine
crenarchaeote HF4000_ANIW93I24]
Length = 1264
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 7/144 (4%)
Query: 2 ETNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
E NG L++T G N+ + + + D N + N++ +++ GIEAA +I E+K
Sbjct: 1112 EENGDWLIQTTGSNLAKVIVVKGV-DKNNVRTNNVFEISTVLGIEAARTSLINELKATLE 1170
Query: 62 VYGIEVDPRHLSLVADYMTHSEFDLIIMVSKSWMLDEVKSTTARSVTPACEPNSHHDVKK 121
G+EVD R+L LVAD M H + + + + + S AR+ P + K
Sbjct: 1171 NQGLEVDVRYLMLVADLMCHKGY--LQQIGRHGIAGSKDSVLARAAFEITVPTIANAAKL 1228
Query: 122 IEFKKQNKILPLVLQNSLTGSSYP 145
E ++ L + +N + GS P
Sbjct: 1229 GEIEE----LKGITENVIVGSLIP 1248
>gi|326435508|gb|EGD81078.1| RNA polymerase III large subunit [Salpingoeca sp. ATCC 50818]
Length = 1377
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 8/108 (7%)
Query: 2 ETNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
+ G H L DG N+ + +L K+ N + + T GIEAA +VI+ +V+ V +
Sbjct: 1201 DEGGVHKLFIDGTNMRGVMSTLGVLG-EKVKCNHVMEVEKTLGIEAARQVIMDQVQYVMS 1259
Query: 62 VYGIEVDPRHLSLVADYMTH-------SEFDLIIMVSKSWMLDEVKST 102
YGI +DPRH L+ D MT + F + M +ML + T
Sbjct: 1260 NYGISIDPRHTMLMGDLMTFKGEVLGITRFGIAKMKDSVFMLASFEKT 1307
>gi|159040773|ref|YP_001540025.1| DNA-directed RNA polymerase subunit A'' [Caldivirga maquilingensis
IC-167]
gi|157919608|gb|ABW01035.1| DNA-directed RNA polymerase, subunit A'' [Caldivirga maquilingensis
IC-167]
Length = 388
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
N ++++ T+G N+ + + D + +DIH +A GIEAA +I+RE+K V
Sbjct: 241 NNEYVIYTEGTNLEAVLLLDEV-DSTRTISHDIHEVAEVLGIEAARTMIMRELKAVLDDQ 299
Query: 64 GIEVDPRHLSLVADYMT 80
G++VD RHL +VAD MT
Sbjct: 300 GLDVDTRHLMMVADVMT 316
>gi|74830406|emb|CAI39063.1| DNA-directed RNA polymerase II largest subunit [Paramecium
tetraurelia]
Length = 1751
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 68
L+T+G N+ I + H+ D + +D++ ++ GIEAA ++ E + +F YGI ++
Sbjct: 1391 LETEGTNLKEILRLEHV-DQRRTTTDDVYEISQVLGIEAARAALVGETRKIFNHYGIYIN 1449
Query: 69 PRHLSLVADYMTH 81
RHL L+ D+MTH
Sbjct: 1450 YRHLYLLYDWMTH 1462
>gi|145490118|ref|XP_001431060.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124398162|emb|CAK63662.1| unnamed protein product [Paramecium tetraurelia]
Length = 1750
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 68
L+T+G N+ I + H+ D + +D++ ++ GIEAA ++ E + +F YGI ++
Sbjct: 1391 LETEGTNLKEILRLEHV-DQRRTTTDDVYEISQVLGIEAARAALVGETRKIFNHYGIYIN 1449
Query: 69 PRHLSLVADYMTH 81
RHL L+ D+MTH
Sbjct: 1450 YRHLYLLYDWMTH 1462
>gi|18977934|ref|NP_579291.1| DNA-directed RNA polymerase subunit A'' [Pyrococcus furiosus DSM
3638]
gi|397652055|ref|YP_006492636.1| DNA-directed RNA polymerase subunit A'' [Pyrococcus furiosus COM1]
gi|22096091|sp|Q8U0M5.1|RPOA2_PYRFU RecName: Full=DNA-directed RNA polymerase subunit A''
gi|18893704|gb|AAL81686.1| DNA-directed RNA polymerase subunit a [Pyrococcus furiosus DSM
3638]
gi|393189646|gb|AFN04344.1| DNA-directed RNA polymerase subunit A'' [Pyrococcus furiosus COM1]
Length = 397
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 67/146 (45%), Gaps = 20/146 (13%)
Query: 3 TNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 62
+N K +LK G+ D + N+IH +A GIEAA II E+ +
Sbjct: 250 SNFKQVLKVPGV------------DPTRTRTNNIHEIAEVLGIEAARNAIIDEIVSTMQE 297
Query: 63 YGIEVDPRHLSLVADYMTHSEFDLIIM-VSKSWMLDEVKSTTARSVTPACEPNSHHDVKK 121
G+EVD RH+ LVAD MT D I+ + + ++ E S AR+ A E H +
Sbjct: 298 QGLEVDIRHIMLVADMMT---LDGIVRPIGRHGVVGEKSSVLARA---AFEITVQHLFEA 351
Query: 122 IEFKKQNKILPLVLQNSLTGSSYPAN 147
E K + L V++N L G P
Sbjct: 352 AE-KGEVDNLNGVIENVLIGQPVPVG 376
>gi|316997007|dbj|BAJ52631.1| RNA polymerase II largest subunit [Paramecium tetraurelia]
Length = 1121
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 68
L+T+G N+ I + H+ D + +D++ ++ GIEAA ++ E + +F YGI ++
Sbjct: 908 LETEGTNLKEILRLEHV-DQRRTTTDDVYEISQVLGIEAARAALVGETRKIFNHYGIYIN 966
Query: 69 PRHLSLVADYMTH 81
RHL L+ D+MTH
Sbjct: 967 YRHLYLLYDWMTH 979
>gi|321459276|gb|EFX70331.1| hypothetical protein DAPPUDRAFT_328199 [Daphnia pulex]
Length = 1457
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 2/131 (1%)
Query: 2 ETNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
E + +L+TDG + + R + D + Y NDI + S G+EAA + + +E+ N+
Sbjct: 1304 EAIAEWILETDGTQLMRVLSERDV-DPVRTYSNDIREIFSVLGVEAARKALEKEMNNLLQ 1362
Query: 62 VYGIEVDPRHLSLVADYMTHS-EFDLIIMVSKSWMLDEVKSTTARSVTPACEPNSHHDVK 120
YG+ V+ RHL+L+ D MT + + I + + +K T +V+ E H ++
Sbjct: 1363 FYGLNVNHRHLALLCDVMTATGQLMPISSIDRQDTSALMKCTVKETVSVLLEAAGHAEID 1422
Query: 121 KIEFKKQNKIL 131
+ N IL
Sbjct: 1423 PLRGVSVNLIL 1433
>gi|374327624|ref|YP_005085824.1| DNA-directed RNA polymerase subunit A'' [Pyrobaculum sp. 1860]
gi|356642893|gb|AET33572.1| DNA-directed RNA polymerase subunit A'' [Pyrobaculum sp. 1860]
Length = 379
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
T+G N+ + Q + D + Y ND+H + GIEA ++ +E+K V G++VD R
Sbjct: 240 TEGTNLEAVLQLEEV-DPTRTYSNDLHEVEEVLGIEATRALVAQEIKRVLEEQGLDVDIR 298
Query: 71 HLSLVADYMTHS 82
H+ +VAD MT S
Sbjct: 299 HMYMVADAMTWS 310
>gi|312375441|gb|EFR22815.1| hypothetical protein AND_14157 [Anopheles darlingi]
Length = 1880
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
G+ LL+TDG ++ + R + D + Y NDI + S GIEA + + +E+ NV YG
Sbjct: 1322 GEWLLETDGTSMMKVLSERDV-DPVRTYSNDICEIFSVLGIEAVRKSVEKEMNNVLQFYG 1380
Query: 65 IEVDPRHLSLVADYMT 80
+ V+ RHL+L+ D MT
Sbjct: 1381 LYVNYRHLALLCDVMT 1396
>gi|119112579|ref|XP_317690.3| AGAP007810-PA [Anopheles gambiae str. PEST]
gi|116123421|gb|EAA12308.3| AGAP007810-PA [Anopheles gambiae str. PEST]
Length = 1878
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
G+ LL+TDG ++ + R + D + Y NDI + S GIEA + + +E+ NV YG
Sbjct: 1322 GEWLLETDGTSMMKVLSERDV-DPVRTYSNDICEIFSVLGIEAVRKSVEKEMNNVLQFYG 1380
Query: 65 IEVDPRHLSLVADYMT 80
+ V+ RHL+L+ D MT
Sbjct: 1381 LYVNYRHLALLCDVMT 1396
>gi|403223272|dbj|BAM41403.1| DNA-directed RNA polymerase [Theileria orientalis strain Shintoku]
Length = 1645
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L TDG N+ + ++ K + ND+ + + +GIEAA R ++RE++ V + G V
Sbjct: 1260 VLDTDGCNLENVLPI-PCVEYTKTFSNDVSEIFNVFGIEAARRALLREIRAVISFDGAYV 1318
Query: 68 DPRHLSLVADYMTHSEFDLII 88
+ RHLSL+ D MT + + I
Sbjct: 1319 NYRHLSLLCDIMTQKGYLMSI 1339
>gi|296243130|ref|YP_003650617.1| DNA-directed RNA polymerase subunit A' [Thermosphaera aggregans DSM
11486]
gi|296095714|gb|ADG91665.1| DNA-directed RNA polymerase, subunit A' [Thermosphaera aggregans
DSM 11486]
Length = 408
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSEFD 85
+D +LY N++ + GIEAA II+E+KNV G++VD RH+ L+AD MT +
Sbjct: 267 IDHKRLYTNNVFEIERVLGIEAARAAIIKEIKNVLDDQGLDVDIRHIILLADIMTWTGH- 325
Query: 86 LIIMVSKSWMLDEVKSTTARS 106
I V + + E +S AR+
Sbjct: 326 -IRQVGRMGVAGEKQSVLARA 345
>gi|327311710|ref|YP_004338607.1| DNA-directed RNA polymerase subunit A'' [Thermoproteus uzoniensis
768-20]
gi|326948189|gb|AEA13295.1| DNA-directed RNA polymerase subunit A'' [Thermoproteus uzoniensis
768-20]
Length = 378
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
G+ + T+G N+ + Q + D + Y ND+H +A GIE A +I E++ V A
Sbjct: 232 TGEWYIITEGSNLEGVLQLDEV-DHTRTYSNDLHEVAEVLGIEVARTLIALEIRRVLAEQ 290
Query: 64 GIEVDPRHLSLVADYMT 80
G++VD RH+ VAD MT
Sbjct: 291 GLDVDSRHMYTVADAMT 307
>gi|170291135|ref|YP_001737951.1| DNA-directed RNA polymerase subunit A [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170175215|gb|ACB08268.1| DNA-directed RNA polymerase subunit A [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 1324
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 1 METNGK--HLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKN 58
+ET+G+ ++++T G N+ + +D+ + ND + GIEAA I E+ +
Sbjct: 1156 VETDGRKEYIIRTSGSNLAAVLSM-SCVDIARTITNDCKEIERVLGIEAARNCIFNELAS 1214
Query: 59 VFAVYGIEVDPRHLSLVADYMTHS 82
+ G+EVD R++SLVAD MT+S
Sbjct: 1215 ILEEQGLEVDRRYISLVADIMTYS 1238
>gi|320101548|ref|YP_004177140.1| DNA-directed RNA polymerase subunit A' [Desulfurococcus mucosus DSM
2162]
gi|319753900|gb|ADV65658.1| DNA-directed RNA polymerase, subunit A' [Desulfurococcus mucosus
DSM 2162]
Length = 407
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
++++ +G N+ + + + D ++Y N+I + GIEAA + IIRE++ + G+
Sbjct: 247 EYVIVAEGSNLEEVMRVEGV-DWRRVYTNNIQEIEEVLGIEAARQAIIREIREILEDQGL 305
Query: 66 EVDPRHLSLVADYMT 80
+VD RH+ L+AD MT
Sbjct: 306 DVDIRHIMLLADMMT 320
>gi|284162090|ref|YP_003400713.1| DNA-directed RNA polymerase subunit A'' [Archaeoglobus profundus
DSM 5631]
gi|284012087|gb|ADB58040.1| DNA-directed RNA polymerase, subunit A'' [Archaeoglobus profundus
DSM 5631]
Length = 377
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
+++L T+G N+ + + + + D + NDI+ + GIEAA II+E K G+
Sbjct: 231 EYVLYTEGSNLKKVMKVKGV-DFTRTLTNDIYEIYEVLGIEAARAAIIKEAKETLEEQGL 289
Query: 66 EVDPRHLSLVADYMTHSEF 84
+VD RH+ LVAD MT +
Sbjct: 290 DVDVRHIMLVADVMTADGY 308
>gi|222445205|ref|ZP_03607720.1| hypothetical protein METSMIALI_00828 [Methanobrevibacter smithii
DSM 2375]
gi|261350233|ref|ZP_05975650.1| DNA-directed RNA polymerase, subunit A [Methanobrevibacter smithii
DSM 2374]
gi|222434770|gb|EEE41935.1| DNA-directed RNA polymerase, subunit A'' [Methanobrevibacter
smithii DSM 2375]
gi|288861019|gb|EFC93317.1| DNA-directed RNA polymerase, subunit A [Methanobrevibacter smithii
DSM 2374]
Length = 403
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 7/138 (5%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
++ T+G N+ I + D + NDIH + + GIEAA + II E +N G+ V
Sbjct: 258 IMHTEGSNLKDILSMEGI-DTYRTTTNDIHEIETVLGIEAARQSIINEARNTLENQGLSV 316
Query: 68 DPRHLSLVADYMTHSEFDLIIMVSKSWMLDEVKSTTARSVTPACEPNSHHDVKKIEFKKQ 127
D RH+ LVAD MT SE + + + + + E S AR+ A E H + + + +
Sbjct: 317 DVRHIMLVADIMT-SEGE-VKSIGRHGISGEKSSVLARA---AFEETGKH-LLRASIRGE 370
Query: 128 NKILPLVLQNSLTGSSYP 145
L +++N + G P
Sbjct: 371 VDDLTGIIENIIIGQPIP 388
>gi|148642968|ref|YP_001273481.1| DNA-directed RNA polymerase subunit A'' [Methanobrevibacter smithii
ATCC 35061]
gi|148551985|gb|ABQ87113.1| DNA-dependent RNA polymerase, subunit A, RpoA [Methanobrevibacter
smithii ATCC 35061]
Length = 403
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 7/138 (5%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
++ T+G N+ I + D + NDIH + + GIEAA + II E +N G+ V
Sbjct: 258 IMHTEGSNLKDILSMEGI-DTYRTTTNDIHEIETVLGIEAARQSIINEARNTLENQGLSV 316
Query: 68 DPRHLSLVADYMTHSEFDLIIMVSKSWMLDEVKSTTARSVTPACEPNSHHDVKKIEFKKQ 127
D RH+ LVAD MT SE + + + + + E S AR+ A E H + + + +
Sbjct: 317 DVRHIMLVADIMT-SEGE-VKSIGRHGISGEKSSVLARA---AFEETGKH-LLRASIRGE 370
Query: 128 NKILPLVLQNSLTGSSYP 145
L +++N + G P
Sbjct: 371 VDDLTGIIENIIIGQPIP 388
>gi|330833902|ref|YP_004408630.1| DNA-directed RNA polymerase subunit A'' [Metallosphaera cuprina
Ar-4]
gi|329566041|gb|AEB94146.1| DNA-directed RNA polymerase subunit A'' [Metallosphaera cuprina
Ar-4]
Length = 392
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
++++ TDG N+ + + + D++++ N++H + + GIEA +I +E+K V G+
Sbjct: 245 EYVIVTDGSNLEGVLGVKGV-DVSRIETNNLHEVENVLGIEAVRELITKEIKKVLEDQGL 303
Query: 66 EVDPRHLSLVADYMTHS 82
+VD RH+ LV+D MT +
Sbjct: 304 DVDIRHIELVSDIMTRT 320
>gi|326437302|gb|EGD82872.1| hypothetical protein PTSG_12033 [Salpingoeca sp. ATCC 50818]
Length = 1034
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 2 ETNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
+ G H L DG N+ + +L K+ N + + T GIEAA +VI+ +V+ V +
Sbjct: 858 DEGGVHKLFIDGTNMRGVMSTLGVLG-EKVKCNHVMEVEKTLGIEAARQVIMDQVQYVMS 916
Query: 62 VYGIEVDPRHLSLVADYMT 80
YGI +DPRH L+ D MT
Sbjct: 917 NYGISIDPRHTMLMGDLMT 935
>gi|11499473|ref|NP_070714.1| DNA-directed RNA polymerase subunit A'' [Archaeoglobus fulgidus DSM
4304]
gi|14548238|sp|O28390.1|RPOA2_ARCFU RecName: Full=DNA-directed RNA polymerase subunit A''
gi|2648655|gb|AAB89364.1| DNA-directed RNA polymerase, subunit A'' (rpoA2) [Archaeoglobus
fulgidus DSM 4304]
Length = 380
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
+++L T+G N+ I + + + D + N+I+ + GIEAA IIRE + G+
Sbjct: 232 EYVLYTEGSNLKKIMKVKGV-DFTRTTTNNIYEIYEVLGIEAARNAIIREALDTLEEQGL 290
Query: 66 EVDPRHLSLVADYMT 80
EVD RH+ LVAD MT
Sbjct: 291 EVDVRHIMLVADVMT 305
>gi|324120554|dbj|BAJ78668.1| RNA polymerase II largest subunit [Reticulitermes speratus]
Length = 1732
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D N+ + NDI + S GIEA + + +E+ V YG+ V
Sbjct: 1328 LLETDGTSMMKVLSERDV-DTNRTFSNDICEIFSVLGIEAVRKSVEKEMNTVLQFYGLYV 1386
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1387 NYRHLALLCDVMT 1399
>gi|324120552|dbj|BAJ78667.1| RNA polymerase II largest subunit [Blattella nipponica]
Length = 1598
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D N+ + NDI + S GIEA + + +E+ V YG+ V
Sbjct: 1329 LLETDGTSMMKVLSERDV-DTNRTFSNDICEIFSVLGIEAVRKSVEKEMNTVLQFYGLYV 1387
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1388 NYRHLALLCDVMT 1400
>gi|296109330|ref|YP_003616279.1| RNA polymerase Rpb1 domain 5 [methanocaldococcus infernus ME]
gi|295434144|gb|ADG13315.1| RNA polymerase Rpb1 domain 5 [Methanocaldococcus infernus ME]
Length = 822
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 2 ETNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
+ G++++ T G N+ + + + D + N+I + GIEAA II E+KN
Sbjct: 666 DKTGEYVIHTQGSNLREVFKIEGV-DTRRTITNNIIEIQEVLGIEAARNAIINEMKNTLE 724
Query: 62 VYGIEVDPRHLSLVADYMT 80
G+EVD RHL LVAD MT
Sbjct: 725 QQGLEVDIRHLMLVADMMT 743
>gi|388580196|gb|EIM20513.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Wallemia sebi CBS 633.66]
Length = 1752
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 1 METNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 60
E + +L+TDG+N++ + +H+ D + Y N + GIEAA I++E++NV
Sbjct: 1310 FERQQEWVLETDGVNLSEVLPVKHV-DGTRTYSNHCQEIFEVLGIEAARNAILKELRNVI 1368
Query: 61 AVYGIEVDPRHLSLVADYMTH 81
G V+ RHL+L+ D MT+
Sbjct: 1369 EFDGSYVNYRHLALLCDLMTN 1389
>gi|57641016|ref|YP_183494.1| DNA-directed RNA polymerase subunit A'' [Thermococcus kodakarensis
KOD1]
gi|73917871|sp|Q5JE34.1|RPOA2_PYRKO RecName: Full=DNA-directed RNA polymerase subunit A''
gi|57159340|dbj|BAD85270.1| DNA-directed RNA polymerase, subunit A'' [Thermococcus kodakarensis
KOD1]
Length = 391
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 68/148 (45%), Gaps = 24/148 (16%)
Query: 3 TNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 62
+N K +LK G+ D + N+I +A GIEAA II E+ +
Sbjct: 248 SNFKQVLKVPGV------------DPTRTRTNNIWEIAEVLGIEAARNAIIDEIVSTMRE 295
Query: 63 YGIEVDPRHLSLVADYMTHSEFDLIIM-VSKSWMLDEVKSTTARSVTPACEPNSHHDVKK 121
G+EVD RH+ LVAD MT D +I + + ++ E S AR+ A E + H
Sbjct: 296 QGLEVDVRHIMLVADMMT---LDGVIRPIGRHGIVGEKASVLARA---AFEITTQHLFAA 349
Query: 122 IEFKKQNKILPL--VLQNSLTGSSYPAN 147
E + ++ PL V++N L G P
Sbjct: 350 AE---RGEVDPLNGVVENVLIGQPVPVG 374
>gi|373809986|dbj|BAL46464.1| RNA polymerase I largest subunit, partial [Triticum dicoccoides]
gi|373809990|dbj|BAL46466.1| RNA polymerase I largest subunit, partial [Triticum dicoccoides]
gi|373809994|dbj|BAL46468.1| RNA polymerase I largest subunit, partial [Triticum turgidum subsp.
dicoccon]
gi|373809998|dbj|BAL46470.1| RNA polymerase I largest subunit, partial [Triticum turgidum subsp.
paleocolchicum]
gi|373810002|dbj|BAL46472.1| RNA polymerase I largest subunit, partial [Triticum durum]
gi|373810006|dbj|BAL46474.1| RNA polymerase I largest subunit, partial [Triticum carthlicum]
gi|373810010|dbj|BAL46476.1| RNA polymerase I largest subunit, partial [Triticum aestivum]
Length = 400
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 33/55 (60%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
L+T G++ + LLD+ KL NDIH M TYG+EAA II EVK VF +
Sbjct: 346 LQTAGLDFEVFWDLQDLLDVRKLTSNDIHAMLRTYGVEAARATIINEVKAVFEPF 400
>gi|324120550|dbj|BAJ78666.1| RNA polymerase II largest subunit [Tenodera aridifolia]
Length = 1844
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D N+ + NDI + S GIEA + + +E+ V YG+ V
Sbjct: 1329 LLETDGTSMMKVLSERDV-DTNRTFSNDICEIFSVLGIEAVRKSVEKEMNAVLQFYGLYV 1387
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1388 NYRHLALLCDVMT 1400
>gi|409095099|ref|ZP_11215123.1| DNA-directed RNA polymerase subunit A'' [Thermococcus zilligii AN1]
Length = 391
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 73/145 (50%), Gaps = 13/145 (8%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
++++ T+G N+ + + + D + N+I +A GIEAA II E+ + G+
Sbjct: 240 EYVIYTEGSNLKQVLKVPGV-DPTRTRTNNIWEIAEVLGIEAARNAIIEEIVSTMREQGL 298
Query: 66 EVDPRHLSLVADYMTHSEFDLIIM-VSKSWMLDEVKSTTARSVTPACEPNSHHDVKKIEF 124
EVD RH+ LVAD MT D +I + + ++ E S AR+ + E + H E
Sbjct: 299 EVDIRHIMLVADMMT---LDGVIRPIGRHGVVGEKASVLARA---SFEITTTH---LFEA 349
Query: 125 KKQNKILPL--VLQNSLTGSSYPAN 147
++ ++ PL V++N L G P
Sbjct: 350 AERGEVDPLNGVVENVLIGQPVPVG 374
>gi|167527458|ref|XP_001748061.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773479|gb|EDQ87118.1| predicted protein [Monosiga brevicollis MX1]
Length = 1307
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
+ L++TDG ++ + R++ D + NDI + ST+GIE A + I E+ NV + G
Sbjct: 817 QFLVETDGSSIQSVFAQRYV-DQERSTSNDIVEIFSTFGIEGARKAIEAEMYNVISFGGS 875
Query: 66 EVDPRHLSLVADYMTHSEFDLII 88
V+ RHLSL+ D MT + + I
Sbjct: 876 YVNARHLSLLCDIMTTKGYLMAI 898
>gi|399218278|emb|CCF75165.1| unnamed protein product [Babesia microti strain RI]
Length = 1801
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 1 METNGKHLLKTDGINVNY---ISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVK 57
E +L TDG N+ I Q R+ +K NDI + + GIEAA R ++RE++
Sbjct: 1366 FERRNNWVLDTDGCNLEQVLPIPQVRY----SKTISNDITEIFNVLGIEAARRALLRELR 1421
Query: 58 NVFAVYGIEVDPRHLSLVADYMTH 81
V + G V+ RHL+L+ D MTH
Sbjct: 1422 AVISFDGSYVNYRHLALLCDVMTH 1445
>gi|118348890|ref|XP_001007918.1| RNA polymerase Rpb1, domain 2 family protein [Tetrahymena
thermophila]
gi|89289685|gb|EAR87673.1| RNA polymerase Rpb1, domain 2 family protein [Tetrahymena thermophila
SB210]
Length = 1759
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
+H+ T G N+ + + + D + Y NDI + + GIEA R I+ +++ V YGI
Sbjct: 1389 EHIFNTSGSNLKEVLKVDKV-DATRTYSNDIQEIITILGIEAGRRSIVNQIRVVIEPYGI 1447
Query: 66 EVDPRHLSLVADYMT 80
++ RHL+++A++MT
Sbjct: 1448 YINYRHLAILAEWMT 1462
>gi|268323373|emb|CBH36961.1| probable DNA-directed RNA polymerase subunit A'' [uncultured
archaeon]
Length = 445
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
+G+++L T+G + + + + D + N+I+ ++ GIEAA II E+ +
Sbjct: 299 SGEYVLYTEGSALKKVLKVEGV-DSRRTTTNNINEISDVLGIEAARNAIIEEMASTLDEQ 357
Query: 64 GIEVDPRHLSLVADYMT 80
G++VDPRH++L+AD MT
Sbjct: 358 GLDVDPRHITLIADTMT 374
>gi|12642614|gb|AAK00311.1|AF315821_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Monosiga
brevicollis]
Length = 1743
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
+ L++TDG ++ + R++ D + NDI + ST+GIE A + I E+ NV + G
Sbjct: 1253 QFLVETDGSSIQSVFAQRYV-DQERSTSNDIVEIFSTFGIEGARKAIEAEMYNVISFGGS 1311
Query: 66 EVDPRHLSLVADYMTHSEFDLII 88
V+ RHLSL+ D MT + + I
Sbjct: 1312 YVNARHLSLLCDIMTTKGYLMAI 1334
>gi|15669232|ref|NP_248037.1| DNA-directed RNA polymerase subunit A [Methanocaldococcus
jannaschii DSM 2661]
gi|2500639|sp|Q58446.1|RPOA2_METJA RecName: Full=DNA-directed RNA polymerase subunit A''; Contains:
RecName: Full=Mja rpoA2 intein; AltName: Full=Mja rpol
A'' intein
gi|1591697|gb|AAB99047.1| DNA-directed RNA polymerase, subunit A'' (rpoA2)
[Methanocaldococcus jannaschii DSM 2661]
Length = 859
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
G+++L T G N+ + + + D + N+I + GIEAA II E++N
Sbjct: 703 GGEYVLYTQGSNLREVFKIDGV-DTTRTITNNIIEIQEVLGIEAARNAIINEMRNTLEQQ 761
Query: 64 GIEVDPRHLSLVADYMT 80
G+EVD RHL LVAD MT
Sbjct: 762 GLEVDIRHLMLVADIMT 778
>gi|302348975|ref|YP_003816613.1| DNA-directed RNA polymerase subunit A'' [Acidilobus saccharovorans
345-15]
gi|302329387|gb|ADL19582.1| DNA-directed RNA polymerase subunit A'' [Acidilobus saccharovorans
345-15]
Length = 446
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 59/107 (55%), Gaps = 5/107 (4%)
Query: 2 ETNGKH--LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNV 59
E GKH ++ +G N+ + + + D ++ N+I+ +A GIEAA II+E+ +V
Sbjct: 274 EKTGKHEYVIIAEGSNLAEVMRVDGV-DATRVETNNIYEIADVLGIEAARNSIIKEIMDV 332
Query: 60 FAVYGIEVDPRHLSLVADYMTHSEFDLIIMVSKSWMLDEVKSTTARS 106
G++VD RH+ LVAD MT + I + + ++ E S AR+
Sbjct: 333 LQSSGLDVDIRHVMLVADIMTWT--GKIRQIGRLGVVGEKPSVIARA 377
>gi|395646425|ref|ZP_10434285.1| DNA-directed RNA polymerase, subunit A'' [Methanofollis liminatans
DSM 4140]
gi|395443165|gb|EJG07922.1| DNA-directed RNA polymerase, subunit A'' [Methanofollis liminatans
DSM 4140]
Length = 389
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
G+++L T+G N+ + + + D + N+I+ ++ GIEAA II E+K+
Sbjct: 238 GGEYILYTEGSNIKDVFEIEGV-DTTRTRTNNINEISQILGIEAARNAIIDEMKSTLGEQ 296
Query: 64 GIEVDPRHLSLVADYM 79
GI VD RH+ L+AD M
Sbjct: 297 GISVDVRHIMLIADMM 312
>gi|449296109|gb|EMC92129.1| hypothetical protein BAUCODRAFT_78328 [Baudoinia compniacensis UAMH
10762]
Length = 1477
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 34 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH-SEFDLIIMVSK 92
N I +AS GIEAA R II E+ +V G+++DPRH+ L+AD MT+ E I
Sbjct: 1323 NSIMEVASVLGIEAARRTIISEISSVMG--GMDIDPRHMQLLADVMTYRGEVLGITRFGL 1380
Query: 93 SWMLDEVKSTTARSVTP 109
S M D V + TP
Sbjct: 1381 SKMRDSVLQLASFEKTP 1397
>gi|358060144|dbj|GAA94203.1| hypothetical protein E5Q_00851 [Mixia osmundae IAM 14324]
Length = 1436
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 20/111 (18%)
Query: 1 METNG-KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNV 59
+E NG + ++ TDG+ D ++ N I + GIEAA + II E+
Sbjct: 1280 VEGNGLREVMTTDGV------------DGRRVTSNHIMEVVKVLGIEAARQTIINEIGGT 1327
Query: 60 FAVYGIEVDPRHLSLVADYMTH-------SEFDLIIMVSKSWMLDEVKSTT 103
+G+ VDPRHL L+ D MT + F + + + ML + TT
Sbjct: 1328 MGAHGLSVDPRHLGLLGDVMTCKGEVLGITRFGVAKLKDSTLMLASFEKTT 1378
>gi|392572014|gb|EIW65186.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Trametes versicolor FP-101664 SS1]
Length = 1748
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDG+N+ + + D + Y N+ + GIEAA I+RE++NV G V
Sbjct: 1318 VLETDGVNLKTVMCIDGV-DFKRTYSNNCVEIFDVLGIEAARAAIMRELRNVIEFDGSYV 1376
Query: 68 DPRHLSLVADYMTH 81
+ RHL+L+ D MTH
Sbjct: 1377 NYRHLALLCDLMTH 1390
>gi|305663641|ref|YP_003859929.1| DNA-directed RNA polymerase, subunit A' [Ignisphaera aggregans DSM
17230]
gi|304378210|gb|ADM28049.1| DNA-directed RNA polymerase, subunit A' [Ignisphaera aggregans DSM
17230]
Length = 391
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
+++L +G N++ + + + D ++ N+I + GIEAA ++I E+ NV G+
Sbjct: 242 EYVLVCEGSNLSELMEIEGV-DYRRIRTNNIREVEEILGIEAARSLLIEEIMNVLEEQGL 300
Query: 66 EVDPRHLSLVADYMTHS 82
+VD RH++LVAD MT +
Sbjct: 301 DVDIRHVTLVADIMTRT 317
>gi|373809837|dbj|BAL46449.1| RNA polymerase I largest subunit, partial [Aegilops searsii]
gi|373809956|dbj|BAL46448.1| RNA polymerase I largest subunit, partial [Aegilops searsii]
Length = 417
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 38/62 (61%)
Query: 2 ETNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
++ K+ L+T G++ + LD++KL NDIH + +TYG+EAA II EVK VF
Sbjct: 356 DSTNKNKLQTSGVDFEVFWDLQDYLDIHKLTSNDIHAILNTYGVEAARATIINEVKAVFE 415
Query: 62 VY 63
+
Sbjct: 416 PF 417
>gi|373809960|dbj|BAL46451.1| RNA polymerase I largest subunit, partial [Aegilops sharonensis]
Length = 417
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 38/62 (61%)
Query: 2 ETNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
++ K+ L+T G++ + LD++KL NDIH + +TYG+EAA II EVK VF
Sbjct: 356 DSTNKNKLQTSGVDFEVFWDLQDYLDIHKLTSNDIHAILNTYGVEAARATIINEVKAVFE 415
Query: 62 VY 63
+
Sbjct: 416 PF 417
>gi|373809962|dbj|BAL46452.1| RNA polymerase I largest subunit, partial [Aegilops longissima]
gi|373809964|dbj|BAL46453.1| RNA polymerase I largest subunit, partial [Aegilops longissima]
Length = 417
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 38/62 (61%)
Query: 2 ETNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
++ K+ L+T G++ + LD++KL NDIH + +TYG+EAA II EVK VF
Sbjct: 356 DSTNKNKLQTSGVDFEVFWDLQDYLDIHKLTSNDIHAILNTYGVEAARATIINEVKAVFE 415
Query: 62 VY 63
+
Sbjct: 416 PF 417
>gi|373809958|dbj|BAL46450.1| RNA polymerase I largest subunit, partial [Aegilops sharonensis]
Length = 417
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 38/62 (61%)
Query: 2 ETNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
++ K+ L+T G++ + LD++KL NDIH + +TYG+EAA II EVK VF
Sbjct: 356 DSTNKNKLQTSGVDFEVFWDLQDYLDIHKLTSNDIHAILNTYGVEAARATIINEVKAVFE 415
Query: 62 VY 63
+
Sbjct: 416 PF 417
>gi|373810014|dbj|BAL46478.1| RNA polymerase I largest subunit, partial [Secale cereale]
Length = 401
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
L+T G++ + LD++KL NDIH M TYG+EAA II EVK VF +
Sbjct: 347 LQTAGLDFEVFWDLQDFLDVSKLTSNDIHAMLRTYGVEAARATIINEVKAVFEPF 401
>gi|373809934|dbj|BAL46437.1| RNA polymerase I largest subunit, partial [Aegilops uniaristata]
Length = 400
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
L+T G++ + LD++KL NDIH M TYG+EAA II EVK VF +
Sbjct: 346 LQTAGLDFEVFWDLQDFLDVSKLTSNDIHAMLRTYGVEAARATIINEVKAVFEPF 400
>gi|330040372|ref|XP_003239880.1| RNA polymerase III largest subunit [Cryptomonas paramecium]
gi|327206805|gb|AEA38982.1| RNA polymerase III largest subunit [Cryptomonas paramecium]
Length = 1298
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 31 LYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSEFDLIIMV 90
+Y N I T GIEAA VI+ E++ +F YGI+++ +HLSL++D MT F I+
Sbjct: 1178 IYSNHIFDTVKTLGIEAARSVIVIELEIIFEAYGIKINKKHLSLLSDLMT---FQGEILG 1234
Query: 91 SKSWMLDEVKSTT 103
+ L ++KS T
Sbjct: 1235 ITRYGLAKIKSNT 1247
>gi|162606212|ref|XP_001713621.1| RNA polymerase III largest subunit [Guillardia theta]
gi|13794541|gb|AAK39916.1|AF165818_124 RNA polymerase III largest subunit [Guillardia theta]
Length = 1289
Score = 52.0 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 25/55 (45%), Positives = 37/55 (67%)
Query: 30 KLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSEF 84
KLY N+I+ + + GIEA+ +I+ E+ N F +GI D RH+ L+ADYMT + F
Sbjct: 1174 KLYCNNINSIYNFLGIEASRELIVLEITNTFKSHGIFSDNRHVYLLADYMTFNGF 1228
>gi|20978714|sp|Q979F5.1|RPOA2_THEVO RecName: Full=DNA-directed RNA polymerase subunit A''
gi|14325444|dbj|BAB60348.1| DNA-directed RNA polymerase A'' [Thermoplasma volcanium GSS1]
Length = 508
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 33/57 (57%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHS 82
+D + Y NDI +A+ GIEAA I+ E + G+ VD RHL LVAD MT S
Sbjct: 377 VDPTRTYTNDIVEIATVLGIEAARNAILNEAQRTLQEQGLNVDVRHLMLVADMMTFS 433
>gi|118431617|ref|NP_148214.2| DNA-directed RNA polymerase subunit A'' [Aeropyrum pernix K1]
gi|152031671|sp|Q9YAU2.2|RPOA2_AERPE RecName: Full=DNA-directed RNA polymerase subunit A''
gi|116062941|dbj|BAA80856.2| DNA-directed RNA polymerase subunit A [Aeropyrum pernix K1]
Length = 407
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 30/47 (63%)
Query: 34 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMT 80
NDI +A GIEAA II E+K V G++VD RHL L+AD MT
Sbjct: 287 NDIQEIAQVLGIEAARTAIIEEIKRVLEDSGLDVDIRHLMLIADLMT 333
>gi|13542011|ref|NP_111699.1| DNA-directed RNA polymerase subunit A'' [Thermoplasma volcanium
GSS1]
Length = 513
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 33/57 (57%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHS 82
+D + Y NDI +A+ GIEAA I+ E + G+ VD RHL LVAD MT S
Sbjct: 382 VDPTRTYTNDIVEIATVLGIEAARNAILNEAQRTLQEQGLNVDVRHLMLVADMMTFS 438
>gi|4092885|gb|AAD12605.1| RNA polymerase II largest subunit [Antonospora locustae]
Length = 1553
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDG N+ + +L NK+Y ND+ + GIEA I+RE++NV G V
Sbjct: 1241 ILQTDGKNLKQLLLVEDIL-ANKVYCNDLLEVYEVLGIEAVRECILRELRNVIEAEGSYV 1299
Query: 68 DPRHLSLVADYMT 80
+ RHL L+ D MT
Sbjct: 1300 NFRHLYLLCDVMT 1312
>gi|373809946|dbj|BAL46443.1| RNA polymerase I largest subunit, partial [Aegilops speltoides]
gi|373809948|dbj|BAL46444.1| RNA polymerase I largest subunit, partial [Aegilops speltoides]
Length = 416
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%)
Query: 2 ETNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
++ K L+T G++ + LD++KL NDIH + +TYG+EAA II EVK VF
Sbjct: 355 DSTNKKKLQTSGVDFEVFWDLQDYLDIHKLTSNDIHAILNTYGVEAARATIINEVKAVFE 414
Query: 62 VY 63
+
Sbjct: 415 PF 416
>gi|269859720|ref|XP_002649584.1| DNA-directed RNA polymerases I, II, and III, subunit 1
[Enterocytozoon bieneusi H348]
gi|220066947|gb|EED44416.1| DNA-directed RNA polymerases I, II, and III, subunit 1
[Enterocytozoon bieneusi H348]
Length = 1270
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 31/49 (63%)
Query: 34 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHS 82
NDI+ + GIEA II E+K VF +YGI + HL L+ADYM H+
Sbjct: 1152 NDIYAIFLHLGIEACRITIINEIKAVFDIYGIIISEEHLELIADYMCHN 1200
>gi|147818965|emb|CAN67114.1| hypothetical protein VITISV_013402 [Vitis vinifera]
Length = 814
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 41/70 (58%)
Query: 14 INVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLS 73
++ N + + D+ +Y N++H M +TYG+EA I+EV N+ YG++ + H S
Sbjct: 622 VDFNAFWRMQXNFDVRYIYSNNVHAMLNTYGVEATRATXIKEVFNISNAYGVKDNIHHXS 681
Query: 74 LVADYMTHSE 83
+ D+M HS+
Sbjct: 682 EIVDFMIHSD 691
>gi|428671620|gb|EKX72538.1| DNA-directed RNA polymerase II largest subunit, putative [Babesia
equi]
Length = 1733
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 2 ETNGKH------LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIRE 55
ETNG+ +L TDG N+ + + D + ND+ + +GIEAA R ++RE
Sbjct: 1311 ETNGRFERVSQWVLDTDGCNLEDVLPIPSV-DYVRTISNDVSEIFHVFGIEAARRALLRE 1369
Query: 56 VKNVFAVYGIEVDPRHLSLVADYMTH 81
++ V + G V+ RHLSL+ D MT
Sbjct: 1370 LRAVISFDGSYVNYRHLSLLCDVMTQ 1395
>gi|373809950|dbj|BAL46445.1| RNA polymerase I largest subunit, partial [Aegilops bicornis]
Length = 400
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 32/55 (58%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
L+T G++ + LD+ KL NDIH M TYG+EAA II EVK VF +
Sbjct: 346 LQTAGLDFEVFWDLQDFLDVRKLTSNDIHAMLRTYGVEAARATIINEVKAVFEPF 400
>gi|373809952|dbj|BAL46446.1| RNA polymerase I largest subunit, partial [Aegilops bicornis]
Length = 400
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 32/55 (58%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
L+T G++ + LD+ KL NDIH M TYG+EAA II EVK VF +
Sbjct: 346 LQTAGLDFEVFWDLQDFLDVRKLTSNDIHAMLRTYGVEAARATIINEVKAVFEPF 400
>gi|373809930|dbj|BAL46435.1| RNA polymerase I largest subunit, partial [Aegilops comosa]
Length = 401
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 32/55 (58%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
L+T G++ + LD+ KL NDIH M TYG+EAA II EVK VF +
Sbjct: 347 LQTAGLDFEVFWDLQDFLDVRKLTSNDIHAMLRTYGVEAARATIINEVKAVFEPF 401
>gi|373809932|dbj|BAL46436.1| RNA polymerase I largest subunit, partial [Aegilops comosa]
Length = 401
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 32/55 (58%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
L+T G++ + LD+ KL NDIH M TYG+EAA II EVK VF +
Sbjct: 347 LQTAGLDFEVFWDLQDFLDVRKLTSNDIHAMLRTYGVEAARATIINEVKAVFEPF 401
>gi|409193803|gb|AFV31135.1| RNA polymerase II largest subunit [Amoeboaphelidium protococcarum]
Length = 1767
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDGIN+ + ++ D + Y N+I + T GIEA +++E++NV G V
Sbjct: 1316 VLETDGINLKNVMTVDNV-DAGRTYSNNIVEITETLGIEAGRAALLKELRNVIEFDGSYV 1374
Query: 68 DPRHLSLVADYMT 80
+ RHLS++ D MT
Sbjct: 1375 NYRHLSMLCDVMT 1387
>gi|289193126|ref|YP_003459067.1| DNA-directed RNA polymerase, subunit A'' [Methanocaldococcus sp.
FS406-22]
gi|288939576|gb|ADC70331.1| DNA-directed RNA polymerase, subunit A'' [Methanocaldococcus sp.
FS406-22]
Length = 387
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
+++L T G N+ + + + D + N+I + GIEAA II E++N G+
Sbjct: 233 EYVLYTQGSNLREVFKIEGV-DTTRTITNNIIEIQEVLGIEAARNAIINEMRNTLEQQGL 291
Query: 66 EVDPRHLSLVADYMT 80
EVD RHL LVAD MT
Sbjct: 292 EVDIRHLMLVADMMT 306
>gi|424819585|ref|ZP_18244662.1| RNA polymerase Rpb1 domain 5 [Candidatus Parvarchaeum acidophilus
ARMAN-5_'5-way FS']
gi|326422562|gb|EGD71957.1| RNA polymerase Rpb1 domain 5 [Candidatus Parvarchaeum acidophilus
ARMAN-5_'5-way FS']
Length = 376
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
G + +KT G N+ I + + D++K NDI ++ GIEAA +II EV+ G
Sbjct: 215 GNYWIKTIGTNLAEILKMEEV-DVSKTVSNDIIEVSKVLGIEAARNLIIEEVRGTLENVG 273
Query: 65 IEVDPRHLSLVADYM 79
+ VD RH+ L+AD M
Sbjct: 274 LTVDNRHIFLIADAM 288
>gi|269863012|ref|XP_002651062.1| DNA-directed RNA polymerases I, II, and III, subunit 1
[Enterocytozoon bieneusi H348]
gi|220065189|gb|EED42994.1| DNA-directed RNA polymerases I, II, and III, subunit 1
[Enterocytozoon bieneusi H348]
Length = 459
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 31/49 (63%)
Query: 34 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHS 82
NDI+ + GIEA II E+K VF +YGI + HL L+ADYM H+
Sbjct: 361 NDIYAIFLHLGIEACRITIINEIKAVFDIYGIIISEEHLELIADYMCHN 409
>gi|119713761|gb|ABL97810.1| rpoA2 RNA polymerase subunit A'' [uncultured marine bacterium
HF10_29C11]
Length = 287
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
G++ L T G N++ +S+ +D ++ Y N+I + GIEAA + II E+++
Sbjct: 140 GEYYLSTIGSNLSRVSEI-ETIDRSRTYTNNIIEIFDYLGIEAARQAIINELESTLLSAR 198
Query: 65 IEVDPRHLSLVADYMT 80
+EVD RHL +VAD MT
Sbjct: 199 LEVDVRHLLMVADVMT 214
>gi|424814018|ref|ZP_18239196.1| DNA-directed RNA polymerase, beta' subunit/160 kD subunit
[Candidatus Nanosalina sp. J07AB43]
gi|339757634|gb|EGQ42891.1| DNA-directed RNA polymerase, beta' subunit/160 kD subunit
[Candidatus Nanosalina sp. J07AB43]
Length = 370
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSEFD 85
+D N+ ND+ + S GIEA + II EV GI VD RH+ L+AD MT E D
Sbjct: 240 VDENRTISNDLFEILSVLGIEALRQSIINEVNETLEAQGIGVDDRHIMLLADMMTK-EGD 298
Query: 86 LIIMVSKSWMLDEVKSTTARSVTPACEPNSHHDVKKIEFKKQNKILPLVLQNSLTGSSYP 145
L ++ ++ +S ARSV E H +++ + + L V++N L G P
Sbjct: 299 L-NGTTRYGIMGNKESLLARSV---FEETKKH-LRESSLRGETDNLEGVIENILVGQPIP 353
>gi|340502584|gb|EGR29261.1| RNA polymerase domain 2 family protein [Ichthyophthirius multifiliis]
Length = 1496
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKL-----YVNDIHYMASTYGIEAANRVIIREVKN 58
NGK + + I + S + +L + + Y N++ ++ + GIEAA R II E++
Sbjct: 1132 NGKQIKDKEIIFITSGSNLKQILKIPGINPFLTYTNNLQEISESLGIEAARRSIINELRE 1191
Query: 59 VFAVYGIEVDPRHLSLVADYMT 80
V Y + ++ RHLS++AD+MT
Sbjct: 1192 VIEPYDLYINYRHLSILADWMT 1213
>gi|321468694|gb|EFX79678.1| hypothetical protein DAPPUDRAFT_304478 [Daphnia pulex]
Length = 1441
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 2/125 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG + + R + D + Y NDI + GIEAA + I RE+ +V Y + +
Sbjct: 1289 LLETDGTQLMRVLSERDV-DPVRTYSNDICEIMDVLGIEAARKSIKRELNSVLQYYDLYI 1347
Query: 68 DPRHLSLVADYMTHS-EFDLIIMVSKSWMLDEVKSTTARSVTPACEPNSHHDVKKIEFKK 126
+ RHL+L+ D MT + I + + +K T +V+ E H +V +
Sbjct: 1348 NYRHLALLCDVMTATGHMTPINSIDRQDTGALMKCTVKETVSVLSEAAGHAEVDPLRGVS 1407
Query: 127 QNKIL 131
+N IL
Sbjct: 1408 ENLIL 1412
>gi|321468525|gb|EFX79509.1| hypothetical protein DAPPUDRAFT_319347 [Daphnia pulex]
Length = 1459
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 2/125 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG + + R + D + Y NDI + GIEAA + I RE+ +V Y + +
Sbjct: 1307 LLETDGTQLMRVLSERDV-DPVRTYSNDICEIMDVLGIEAARKSIKRELNSVLQYYDLYI 1365
Query: 68 DPRHLSLVADYMTHS-EFDLIIMVSKSWMLDEVKSTTARSVTPACEPNSHHDVKKIEFKK 126
+ RHL+L+ D MT + I + + +K T +V+ E H +V +
Sbjct: 1366 NYRHLALLCDVMTATGHMTPINSIDRQDTGALMKCTVKETVSVLSEAAGHAEVDPLRGVS 1425
Query: 127 QNKIL 131
+N IL
Sbjct: 1426 ENLIL 1430
>gi|399949936|gb|AFP65592.1| DNA-directed RNA polymerase II largest chain [Chroomonas
mesostigmatica CCMP1168]
Length = 1473
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 1 METNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 60
+ +++L T+G+++ YI + + D + NDI + G+EA+ R++I+E++N+
Sbjct: 1313 FRSQKEYVLDTEGVDLRYILNFPGM-DHIRSSSNDIVEIFRILGVEASRRILIQELRNLI 1371
Query: 61 AVYGIEVDPRHLSLVADYMTH 81
+ G V+ RHL L+ D MTH
Sbjct: 1372 SFDGSYVNSRHLYLLVDIMTH 1392
>gi|373809974|dbj|BAL46458.1| RNA polymerase I largest subunit, partial [Hordeum vulgare subsp.
vulgare]
Length = 448
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 35/55 (63%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
L+T G++ + LD++KL NDIH + +TYG+EAA II EVK+VF +
Sbjct: 394 LQTSGVDFEVFWDLQDYLDIHKLKSNDIHAILNTYGVEAARATIINEVKSVFEPF 448
>gi|242011894|ref|XP_002426678.1| predicted protein [Pediculus humanus corporis]
gi|212510849|gb|EEB13940.1| predicted protein [Pediculus humanus corporis]
Length = 1885
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + Y NDI + S GIEA + + +E+ V YG+ V
Sbjct: 1319 LLETDGTSLMKVLSERDV-DPVRTYSNDICEIFSVLGIEAVRKSVEKEMNQVLQFYGLYV 1377
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1378 NYRHLALLCDVMT 1390
>gi|290559149|gb|EFD92510.1| RNA polymerase Rpb1 domain 5 [Candidatus Parvarchaeum acidophilus
ARMAN-5]
Length = 351
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
G + +KT G N+ I + + D++K NDI ++ GIEAA +II EV+ G
Sbjct: 190 GNYWIKTIGTNLAEILKMDEV-DVSKTVSNDIIEVSKVLGIEAARNLIIEEVRGTLENVG 248
Query: 65 IEVDPRHLSLVADYM 79
+ VD RH+ L+AD M
Sbjct: 249 LTVDNRHIFLIADAM 263
>gi|390603892|gb|EIN13283.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Punctularia strigosozonata HHB-11173 SS5]
Length = 1729
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 2 ETNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
E + +L+TDGIN+ + + D + Y N+ + GIEAA I+RE++NV
Sbjct: 1320 ENEKEWVLETDGINLKTVMCIDGV-DFKRTYSNNCVEIFDVLGIEAARAAIMREMRNVIE 1378
Query: 62 VYGIEVDPRHLSLVADYMTH 81
G V+ RHL+L+ D MT
Sbjct: 1379 FDGSYVNYRHLALLCDLMTQ 1398
>gi|373809980|dbj|BAL46461.1| RNA polymerase I largest subunit, partial [Hordeum roshevitzii]
gi|373809982|dbj|BAL46462.1| RNA polymerase I largest subunit, partial [Hordeum roshevitzii]
Length = 445
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
L+T G++ + LD++KL NDIH + +TYG+EAA II EVK VF +
Sbjct: 391 LQTSGVDFEVFWDLQDYLDIHKLKSNDIHAILNTYGVEAARATIINEVKAVFEPF 445
>gi|240977019|ref|XP_002402573.1| DNA-directed RNA polymerase I largest subunit, putative [Ixodes
scapularis]
gi|215491199|gb|EEC00840.1| DNA-directed RNA polymerase I largest subunit, putative [Ixodes
scapularis]
Length = 1640
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 43/63 (68%), Gaps = 6/63 (9%)
Query: 8 LLKTDGINVNYISQYRH--LLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
+L+T+G VN++ +RH ++D+ ++Y NDIH +A+T+GIEAA I R + +V G+
Sbjct: 1582 MLQTEG--VNFVEMFRHGDIVDMRRIYSNDIHAIANTFGIEAARTAIAR--VSHLSVSGM 1637
Query: 66 EVD 68
VD
Sbjct: 1638 SVD 1640
>gi|373809954|dbj|BAL46447.1| RNA polymerase I largest subunit, partial [Aegilops bicornis]
Length = 417
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 38/62 (61%)
Query: 2 ETNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
++ K+ ++T G++ + LD++KL NDIH + +TYG+EAA II EVK VF
Sbjct: 356 DSTNKNKVQTSGVDFEVFWDLQDYLDIHKLTSNDIHAILNTYGVEAARATIINEVKAVFE 415
Query: 62 VY 63
+
Sbjct: 416 PF 417
>gi|392596906|gb|EIW86228.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Coniophora puteana RWD-64-598 SS2]
Length = 1746
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 1 METNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 60
+ T + +L+TDG+N+ + + D + Y N+ + G+EAA I++E++NV
Sbjct: 1311 IATKKEWVLETDGVNLKTVMTISGV-DFRRTYSNNCTEVFDVLGVEAARAAIMKELRNVI 1369
Query: 61 AVYGIEVDPRHLSLVADYMTH 81
G V+ RHLSL+ D MT
Sbjct: 1370 EFDGSYVNYRHLSLLCDLMTQ 1390
>gi|162223|gb|AAA30233.1| RNA polymerase III [Trypanosoma brucei]
Length = 1530
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
+D ++ N + + GIEAA RVI+ E++N+ Y + +D RH+ L+AD MT
Sbjct: 1362 VDSTRVVCNHVAVVERVLGIEAARRVIVDEIQNILKAYSLSIDVRHVYLLADLMTQ 1417
>gi|133355|sp|P08968.1|RPC1_TRYBB RecName: Full=DNA-directed RNA polymerase III subunit RPC1; Short=RNA
polymerase III subunit C1; AltName: Full=DNA-directed RNA
polymerase III largest subunit; AltName: Full=RNA
polymerase III subunit C160
gi|10524|emb|CAA31014.1| unnamed protein product [Trypanosoma brucei]
Length = 1530
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
+D ++ N + + GIEAA RVI+ E++N+ Y + +D RH+ L+AD MT
Sbjct: 1362 VDSTRVVCNHVAVVERVLGIEAARRVIVDEIQNILKAYSLSIDVRHVYLLADLMTQ 1417
>gi|71746952|ref|XP_822531.1| DNA-directed RNA polymerase III largest subunit [Trypanosoma brucei]
gi|70832199|gb|EAN77703.1| DNA-directed RNA polymerase III largest subunit [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 1530
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
+D ++ N + + GIEAA RVI+ E++N+ Y + +D RH+ L+AD MT
Sbjct: 1362 VDSTRVVCNHVAVVERVLGIEAARRVIVDEIQNILKAYSLSIDVRHVYLLADLMTQ 1417
>gi|324120508|dbj|BAJ78645.1| RNA polymerase II largest subunit [Lepidocampa weberi]
Length = 1558
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + Y NDI + S GIEA + + +E+ V + YG+ V
Sbjct: 1328 LLETDGTSLMKVLSERDV-DPVRTYSNDICEIFSVLGIEAVRKSVEKEMNMVLSFYGLYV 1386
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1387 NYRHLALLCDVMT 1399
>gi|261332267|emb|CBH15261.1| DNA-directed RNA polymerase iii largest subunit [Trypanosoma brucei
gambiense DAL972]
Length = 1530
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
+D ++ N + + GIEAA RVI+ E++N+ Y + +D RH+ L+AD MT
Sbjct: 1362 VDSTRVICNHVAVVERVLGIEAARRVIVDEIQNILKAYSLSIDVRHVYLLADLMTQ 1417
>gi|395326417|gb|EJF58827.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Dichomitus squalens LYAD-421 SS1]
Length = 1749
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDG+N+ + + D + Y N+ + GIEAA I++E++NV G V
Sbjct: 1319 VLETDGVNLKTVMCIDGV-DFKRTYSNNCVEVFDVLGIEAARAAIMKELRNVIEFDGSYV 1377
Query: 68 DPRHLSLVADYMTH 81
+ RHL+L+ D MTH
Sbjct: 1378 NYRHLALLCDLMTH 1391
>gi|385302705|gb|EIF46824.1| rna polymerase ii largest subunit, partial [Dekkera bruxellensis
AWRI1499]
Length = 1699
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDGIN++ + + D + Y N + S GIEAA R + +E+ NV A G V
Sbjct: 1303 VLETDGINLSDVIAVDGV-DPTRTYSNSFVEILSVLGIEAARRALYKEILNVIAFDGSYV 1361
Query: 68 DPRHLSLVADYMTH 81
+ RHL+L+ D MT+
Sbjct: 1362 NYRHLALLVDLMTY 1375
>gi|374629650|ref|ZP_09702035.1| DNA-directed RNA polymerase, subunit A' [Methanoplanus limicola DSM
2279]
gi|373907763|gb|EHQ35867.1| DNA-directed RNA polymerase, subunit A' [Methanoplanus limicola DSM
2279]
Length = 388
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
NG+++L T+G N+ + + + D ++ N+I ++ GIEA II E +
Sbjct: 239 NGEYILYTEGSNIKGVFEVEGV-DTSRTRTNNIAEISEVLGIEAGRNAIIDEALSTLREQ 297
Query: 64 GIEVDPRHLSLVADYM 79
GI+VD RH+ LVAD M
Sbjct: 298 GIQVDVRHIMLVADMM 313
>gi|373809972|dbj|BAL46457.1| RNA polymerase I largest subunit, partial [Hordeum vulgare subsp.
vulgare]
gi|373809976|dbj|BAL46459.1| RNA polymerase I largest subunit, partial [Hordeum vulgare subsp.
spontaneum]
gi|373809978|dbj|BAL46460.1| RNA polymerase I largest subunit, partial [Hordeum vulgare subsp.
spontaneum]
Length = 448
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
L+T G++ + LD++KL NDIH + +TYG+EAA II EVK VF +
Sbjct: 394 LQTSGVDFEVFWDLQDYLDIHKLKSNDIHAILNTYGVEAARATIINEVKAVFEPF 448
>gi|327401231|ref|YP_004342070.1| DNA-directed RNA polymerase subunit A'' [Archaeoglobus veneficus
SNP6]
gi|327316739|gb|AEA47355.1| DNA-directed RNA polymerase subunit A'' [Archaeoglobus veneficus
SNP6]
Length = 376
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
+++L T+G N+ + + + + D + NDI+ + GIEAA +IRE + G+
Sbjct: 231 EYVLYTEGSNLKKVMKIKGV-DPTRTLTNDIYEIYEVLGIEAARNAVIREAISTLEEQGL 289
Query: 66 EVDPRHLSLVADYMT 80
EV+ RH+ LVAD MT
Sbjct: 290 EVNVRHIMLVADVMT 304
>gi|149234447|ref|XP_001523103.1| DNA-directed RNA polymerase III largest subunit [Lodderomyces
elongisporus NRRL YB-4239]
gi|146453212|gb|EDK47468.1| DNA-directed RNA polymerase III largest subunit [Lodderomyces
elongisporus NRRL YB-4239]
Length = 1450
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 12/76 (15%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
K ++ T+GI V + H+L++N++ GIEAA IIRE+ + YG+
Sbjct: 1293 KDVMNTEGI-VGTKTTTNHVLEVNEIL-----------GIEAARSSIIREIDYTMSNYGM 1340
Query: 66 EVDPRHLSLVADYMTH 81
VDPRH+ L+ D MT+
Sbjct: 1341 SVDPRHIQLLGDVMTY 1356
>gi|429217661|ref|YP_007175651.1| DNA-directed RNA polymerase, subunit A'''' [Caldisphaera lagunensis
DSM 15908]
gi|429134190|gb|AFZ71202.1| DNA-directed RNA polymerase, subunit A'''' [Caldisphaera lagunensis
DSM 15908]
Length = 427
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 7/109 (6%)
Query: 2 ETNG----KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVK 57
E NG ++++ T+G N+ I + + + D ++ N+I ++ GIEA II+E+
Sbjct: 262 EENGVKKKEYVILTEGSNLAEIMKIKGV-DPGRIETNNIVEISQVLGIEAGRNAIIKEIL 320
Query: 58 NVFAVYGIEVDPRHLSLVADYMTHSEFDLIIMVSKSWMLDEVKSTTARS 106
+V G++VD RH+ LVAD MT + I + + ++ E S AR+
Sbjct: 321 DVLQNSGLDVDIRHVMLVADMMTWT--GKIRQIGRLGVVGEKPSVIARA 367
>gi|330507366|ref|YP_004383794.1| DNA-directed RNA polymerase subunit A' [Methanosaeta concilii GP6]
gi|328928174|gb|AEB67976.1| DNA-directed RNA polymerase, subunit A' [Methanosaeta concilii GP6]
Length = 379
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
+++L T+G ++ + Q+ + D ++ N+I + GIEAA II E + G+
Sbjct: 234 EYILYTEGSSLKKVMQFEGV-DPTRIKTNNISEIGEVLGIEAARNAIINEATDTLREQGL 292
Query: 66 EVDPRHLSLVADYMT 80
VD RH+ LVAD MT
Sbjct: 293 SVDVRHIMLVADIMT 307
>gi|304315187|ref|YP_003850334.1| DNA-directed RNA polymerase, subunit A'' [Methanothermobacter
marburgensis str. Marburg]
gi|302588646|gb|ADL59021.1| DNA-directed RNA polymerase, subunit A'' [Methanothermobacter
marburgensis str. Marburg]
Length = 451
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
T+G N+ + + + D + NDIH + + GIEAA II E K G+ VD R
Sbjct: 310 TEGSNLGAVLKEEGV-DKVRTTTNDIHEIETVLGIEAARNAIIHEAKRTMEEQGLTVDIR 368
Query: 71 HLSLVADYMT 80
H+ LVAD MT
Sbjct: 369 HIMLVADMMT 378
>gi|170062578|ref|XP_001866731.1| DNA-directed RNA polymerase II largest subunit [Culex
quinquefasciatus]
gi|167880465|gb|EDS43848.1| DNA-directed RNA polymerase II largest subunit [Culex
quinquefasciatus]
Length = 1874
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
G+ LL+TDG ++ + R + D + NDI + GIEA + + +E+ NV YG
Sbjct: 1308 GEWLLETDGTSMMKVLSERDV-DPVRTASNDICEIFQVLGIEAVRKSVEKEMNNVLQFYG 1366
Query: 65 IEVDPRHLSLVADYMT 80
+ V+ RHL+L+ D MT
Sbjct: 1367 LYVNYRHLALLCDVMT 1382
>gi|156083004|ref|XP_001608986.1| DNA-directed RNA polymerase II largest subunit [Babesia bovis T2Bo]
gi|154796236|gb|EDO05418.1| DNA-directed RNA polymerase II largest subunit, putative [Babesia
bovis]
Length = 1746
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 2 ETNGKH------LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIRE 55
ETNG+ +L TDG N+ + +D K NDI + GIEAA ++RE
Sbjct: 1311 ETNGRFERVSQWVLDTDGCNLEDVLSI-PCVDAQKSISNDISEIFHVLGIEAARMALLRE 1369
Query: 56 VKNVFAVYGIEVDPRHLSLVADYMTH 81
++ V + G V+ RHLSL+ D MT
Sbjct: 1370 LRAVISFDGSYVNYRHLSLLCDVMTQ 1395
>gi|316997003|dbj|BAJ52629.1| RNA polymerase III largest subunit [Stephanoeca diplocostata]
Length = 933
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 8/102 (7%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 68
L +G ++ + R ++ + N + + GIEAA IIRE++ + +G+ +D
Sbjct: 773 LLVEGTDMRAVMGTRGIVG-TAVVTNHLMDAEACLGIEAARATIIREIQTTMSAHGMTID 831
Query: 69 PRHLSLVADYMTH-------SEFDLIIMVSKSWMLDEVKSTT 103
RH+ L+AD MT + F + M S ++ML + TT
Sbjct: 832 SRHVMLLADLMTFKGEILGITRFGIAKMKSSTFMLASFEKTT 873
>gi|256811205|ref|YP_003128574.1| DNA-directed RNA polymerase subunit A'' [Methanocaldococcus fervens
AG86]
gi|256794405|gb|ACV25074.1| DNA-directed RNA polymerase, subunit A'' [Methanocaldococcus
fervens AG86]
Length = 387
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
+++L + G N+ + + + D + N+I + GIEAA II E++N G+
Sbjct: 234 EYVLYSQGSNLREVFKIEGV-DTTRTITNNIIEIQEVLGIEAARNAIINEMRNTLEQQGL 292
Query: 66 EVDPRHLSLVADYMT 80
EVD RHL LVAD MT
Sbjct: 293 EVDIRHLMLVADMMT 307
>gi|307353874|ref|YP_003894925.1| DNA-directed RNA polymerase subunit A'' [Methanoplanus petrolearius
DSM 11571]
gi|307157107|gb|ADN36487.1| DNA-directed RNA polymerase, subunit A'' [Methanoplanus
petrolearius DSM 11571]
Length = 387
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
NG+++L T+G N+ + + + D + N+I ++ GIEA II E +
Sbjct: 239 NGEYILYTEGSNLKGVFEVDGV-DTTRTRTNNIAEISEVLGIEAGRNAIIDEALSTLREQ 297
Query: 64 GIEVDPRHLSLVADYM 79
GIEVD RH+ LVAD M
Sbjct: 298 GIEVDVRHIMLVADMM 313
>gi|15679065|ref|NP_276182.1| DNA-directed RNA polymerase subunit A'' [Methanothermobacter
thermautotrophicus str. Delta H]
gi|6685899|sp|O27126.1|RPOA2_METTH RecName: Full=DNA-directed RNA polymerase subunit A''
gi|2622151|gb|AAB85543.1| DNA-dependent RNA polymerase, subunit A'' [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 451
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
T+G N+ + + + D + NDIH + + GIEAA II E K G+ VD R
Sbjct: 310 TEGSNLGAVLKEEGV-DKVRTTTNDIHEIETVLGIEAARNAIIHEAKRTMEEQGLTVDIR 368
Query: 71 HLSLVADYMT 80
H+ LVAD MT
Sbjct: 369 HIMLVADMMT 378
>gi|443918878|gb|ELU39223.1| DNA-directed RNA polymerase II largest subunit [Rhizoctonia solani
AG-1 IA]
Length = 1531
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDG+N+ + + D + Y N + GIEAA I+RE++NV G V
Sbjct: 1206 VLETDGVNLKSVLSVDGI-DFTRTYSNKCPEVFEVLGIEAARAAILRELRNVIEFDGSYV 1264
Query: 68 DPRHLSLVADYMTH 81
+ RHL+L+ D MT+
Sbjct: 1265 NYRHLALLTDLMTN 1278
>gi|84490159|ref|YP_448391.1| DNA-directed RNA polymerase subunit A'' [Methanosphaera stadtmanae
DSM 3091]
gi|84373478|gb|ABC57748.1| RpoA2 [Methanosphaera stadtmanae DSM 3091]
Length = 389
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 7/138 (5%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
++ T+G N+ I + + D+ K NDI + GIEAA II E+ G+ V
Sbjct: 245 VIHTEGSNIGAILKIDGV-DIVKTTTNDIFEIEKVLGIEAARNAIIHELYTTMEEQGLSV 303
Query: 68 DPRHLSLVADYMTHSEFDLIIMVSKSWMLDEVKSTTARSVTPACEPNSHHDVKKIEFKKQ 127
D RH+ LVAD MT ++ + + + E S AR+ A E H + + +
Sbjct: 304 DIRHIMLVADMMTSE--GVVKSIGRHGISGEKSSVLARA---AFEETGKH-LLNASIRGE 357
Query: 128 NKILPLVLQNSLTGSSYP 145
L +++N + G P
Sbjct: 358 TDKLTGIIENVIVGQPIP 375
>gi|443899688|dbj|GAC77017.1| RNA polymerase III, large subunit [Pseudozyma antarctica T-34]
Length = 1400
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Query: 30 KLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH-------S 82
+ + N + M S GIEAA + RE++ + +G+ +DPRH+ L+AD MT+ +
Sbjct: 1265 QTHTNHVMEMQSVLGIEAARTSVYREIETTMSAHGMSIDPRHIMLLADTMTYKGEVLGIT 1324
Query: 83 EFDLIIMVSKSWMLDEVKSTT 103
F + M ML + TT
Sbjct: 1325 RFGVAKMKDSVLMLASFEKTT 1345
>gi|324120562|dbj|BAJ78672.1| RNA polymerase II largest subunit [Anacanthocoris striicornis]
Length = 1743
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + + NDI + S GIEA + + +E+ +V YG+ V
Sbjct: 1328 LLETDGTSLMKVLSERDV-DPVRTFSNDICEIFSVLGIEAVRKSVEKEMNSVLQFYGLYV 1386
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1387 NYRHLALLCDVMT 1399
>gi|373809928|dbj|BAL46434.1| RNA polymerase I largest subunit, partial [Triticum urartu]
Length = 401
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
L+T G++ + L++ KL NDIH M TYG+EAA II EVK VF +
Sbjct: 347 LQTSGLDFEVFWDLQDFLNVRKLTSNDIHAMLRTYGVEAARATIINEVKAVFEPF 401
>gi|373809926|dbj|BAL46433.1| RNA polymerase I largest subunit, partial [Triticum urartu]
Length = 401
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
L+T G++ + L++ KL NDIH M TYG+EAA II EVK VF +
Sbjct: 347 LQTSGLDFEVFWDLQDFLNVRKLTSNDIHAMLRTYGVEAARATIINEVKAVFEPF 401
>gi|298674726|ref|YP_003726476.1| DNA-directed RNA polymerase subunit A'' [Methanohalobium
evestigatum Z-7303]
gi|298287714|gb|ADI73680.1| DNA-directed RNA polymerase, subunit A'' [Methanohalobium
evestigatum Z-7303]
Length = 388
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
++ L T+G +N + + + D+ + Y N+I + +GIEAA +++E + + G+
Sbjct: 237 EYTLYTEGSELNEVLKIEGV-DVTRTYTNNIAEIYEVFGIEAARNALVKEAMDTLSEQGL 295
Query: 66 EVDPRHLSLVADYMT 80
VD RH+ LVAD MT
Sbjct: 296 NVDIRHIMLVADIMT 310
>gi|324120518|dbj|BAJ78650.1| RNA polymerase II largest subunit [Isolepisma japonica]
Length = 1775
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + + NDI + S GIEA + + +E+ V + YG+ V
Sbjct: 1329 LLETDGTSLMKVLSERDV-DPVRTFSNDICEIFSVLGIEAVRKSVEKEMNAVLSFYGLYV 1387
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1388 NYRHLALLCDVMT 1400
>gi|324120516|dbj|BAJ78649.1| RNA polymerase II largest subunit [Thermobia domestica]
Length = 1699
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + + NDI + S GIEA + + +E+ V + YG+ V
Sbjct: 1329 LLETDGTSLMKVLSERDV-DPVRTFSNDICEIFSVLGIEAVRKSVEKEMNAVLSFYGLYV 1387
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1388 NYRHLALLCDVMT 1400
>gi|320586791|gb|EFW99454.1| DNA-directed RNA polymerase 2 largest subunit [Grosmannia clavigera
kw1407]
Length = 1745
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 35/56 (62%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
+D + Y ND+H + +GIEAA ++RE+ V + G V+ RHL+L+ D MT+
Sbjct: 1350 VDPKRTYTNDLHQVVDVFGIEAARSTLLRELTAVLSFDGSYVNHRHLALLVDVMTY 1405
>gi|393219057|gb|EJD04545.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Fomitiporia mediterranea MF3/22]
Length = 1782
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDG+N+ + + D + Y N + GIEAA I++E++NV G V
Sbjct: 1354 VLETDGVNLKTVMCIDGV-DWKRTYSNSCVEIFGVLGIEAARAAIMKEMRNVIEFDGSYV 1412
Query: 68 DPRHLSLVADYMTH 81
+ RHL+L+ D MTH
Sbjct: 1413 NYRHLALLCDLMTH 1426
>gi|324120538|dbj|BAJ78660.1| RNA polymerase II largest subunit [Euconocephalus varius]
Length = 1640
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + + NDI + S GIEA + + +E+ V YG+ V
Sbjct: 1329 LLETDGTSMMKVLSERDV-DPVRTFSNDICEIFSVLGIEAVRKSVEKEMNTVLQFYGLYV 1387
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1388 NYRHLALLCDVMT 1400
>gi|403417006|emb|CCM03706.1| predicted protein [Fibroporia radiculosa]
Length = 1621
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDG+N+ + + D + Y N + + GIEAA I++E++ V G V
Sbjct: 1174 VLETDGVNLKAVMSIGGV-DFKRTYSNSCVEVFNVLGIEAARAAIMKELRGVIEFDGSYV 1232
Query: 68 DPRHLSLVADYMTH 81
+ RHLSL+ D MTH
Sbjct: 1233 NYRHLSLLCDLMTH 1246
>gi|449016275|dbj|BAM79677.1| RNA polymerase III largest subunit [Cyanidioschyzon merolae strain
10D]
Length = 1930
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 34/57 (59%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHS 82
+D + +Y N + + GIEAA I++EV A +G+ +D RH+ L++D MT S
Sbjct: 1682 IDASSVYCNHVLVVEQVLGIEAARSTIVKEVLETMAAHGVTLDARHVDLLSDMMTQS 1738
>gi|324120560|dbj|BAJ78671.1| RNA polymerase II largest subunit [Cryptotympana facialis]
Length = 1803
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + + NDI + S GIEA + + +E+ V YG+ V
Sbjct: 1328 LLETDGTSLMKVLSERDV-DPVRTFSNDICEIFSVLGIEAVRKSVEKEMNTVLQFYGLYV 1386
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1387 NYRHLALLCDVMT 1399
>gi|324120520|dbj|BAJ78651.1| RNA polymerase II largest subunit [Epiophlebia superstes]
Length = 1922
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + + NDI + S GIEA + + +E+ V YG+ V
Sbjct: 1316 LLETDGTSLMRVLSERDV-DPVRTFSNDICEIFSVLGIEAVRKSVEKEMNTVLQFYGLYV 1374
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1375 NYRHLALLCDVMT 1387
>gi|356927797|gb|AET42587.1| hypothetical protein EXVG_00238 [Emiliania huxleyi virus 202]
Length = 418
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMT 80
+D +++ NDIH + +T GIEAA VI E+ + G +DPRH+ L A+ MT
Sbjct: 241 VDWSRVMTNDIHNVVNTLGIEAALTVIFNELNSTLTADGSYIDPRHIELTANTMT 295
>gi|324120536|dbj|BAJ78659.1| RNA polymerase II largest subunit [Nomadacris japonica]
Length = 1659
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + + NDI + S GIEA + + +E+ V YG+ V
Sbjct: 1329 LLETDGTSMMKVLSERDV-DPVRTFSNDICEIFSVLGIEAVRKSVEKEMNTVLQFYGLYV 1387
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1388 NYRHLALLCDVMT 1400
>gi|324120530|dbj|BAJ78656.1| RNA polymerase II largest subunit [Aposthonia japonica]
Length = 1697
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + + NDI + S GIEA + + +E+ V + YG+ V
Sbjct: 1306 LLETDGTSMMKVLSERDV-DPVRTFSNDICEIFSVLGIEAVRKSVEKEMNAVLSFYGLYV 1364
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1365 NYRHLALLCDVMT 1377
>gi|324120568|dbj|BAJ78675.1| RNA polymerase II largest subunit [Metylophorus sp. E-43]
Length = 1792
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + + NDI + S GIEA + + +E+ V YG+ V
Sbjct: 1329 LLETDGTSLMKVLSERDV-DPVRTFSNDICEIFSVLGIEAVRKSVEKEMNQVLQFYGLYV 1387
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1388 NYRHLALLCDVMT 1400
>gi|520503|gb|AAC83397.1| RNA polymerase II, largest subunit, partial [Artemia salina]
Length = 1341
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + Y NDI + + GIEA + I +E+ V YG+ V
Sbjct: 1247 LLETDGTSLMKVLSERDV-DPVRTYSNDICEIFTVLGIEAVRKSIEKEMNAVLQFYGLYV 1305
Query: 68 DPRHLSLVADYMTHSEFDLII 88
+ RHL+L+ D MT + + I
Sbjct: 1306 NYRHLALLCDVMTAKGYLMAI 1326
>gi|324120522|dbj|BAJ78652.1| RNA polymerase II largest subunit [Mnais pruinosa pruinosa]
Length = 1557
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + + NDI + S GIEA + + +E+ V YG+ V
Sbjct: 1336 LLETDGTSLMRVLSERDV-DPVRTFSNDICEIFSVLGIEAVRKSVEKEMNTVLQFYGLYV 1394
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1395 NYRHLALLCDVMT 1407
>gi|321464303|gb|EFX75312.1| hypothetical protein DAPPUDRAFT_306846 [Daphnia pulex]
Length = 1895
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG + + R + D + Y NDI + + GIEA + + +E+ V YG+ V
Sbjct: 1329 LLETDGTQLMRVLSERDV-DPVRTYSNDICEIFAVLGIEAVRKSVEKEMNTVLQFYGLYV 1387
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1388 NYRHLALLCDVMT 1400
>gi|124485980|ref|YP_001030596.1| hypothetical protein Mlab_1160 [Methanocorpusculum labreanum Z]
gi|124363521|gb|ABN07329.1| DNA-directed RNA polymerase, subunit A'' [Methanocorpusculum
labreanum Z]
Length = 504
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
N +++L T+G N+ + + + D + N+I +AST G+EAA II E
Sbjct: 354 NDEYILHTEGSNLKDVFEIDGV-DCTRTRTNNISEIASTLGVEAARSAIIYEAFTTLKEQ 412
Query: 64 GIEVDPRHLSLVADYM 79
GI VD RH+ LV+D M
Sbjct: 413 GISVDLRHIMLVSDIM 428
>gi|373809936|dbj|BAL46438.1| RNA polymerase I largest subunit, partial [Aegilops uniaristata]
Length = 401
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
L+T G++ + LD++KL NDIH TYG+EAA II EVK VF +
Sbjct: 347 LQTAGLDFEVFWDLQDFLDVSKLTSNDIHATLRTYGVEAARATIINEVKAVFEPF 401
>gi|324120544|dbj|BAJ78663.1| RNA polymerase II largest subunit [Euborellia plebeja]
Length = 1812
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + + NDI + S GIEA + + +E+ +V YG+ V
Sbjct: 1328 LLETDGTSMMKVLSERDV-DPVRTFSNDICEIFSVLGIEAVRKSVEKEMNSVLQFYGLYV 1386
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1387 NYRHLALLCDVMT 1399
>gi|324120532|dbj|BAJ78657.1| RNA polymerase II largest subunit [Galloisiana yuasai]
Length = 1904
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + + NDI + S GIEA + + +E+ V YG+ V
Sbjct: 1329 LLETDGTSMMKVLSERDV-DPVRTFSNDICEIFSVLGIEAVRKSVEKEMNTVLQFYGLYV 1387
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1388 NYRHLALLCDVMT 1400
>gi|324120534|dbj|BAJ78658.1| RNA polymerase II largest subunit [Karoophasma biedouwense]
Length = 1907
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + + NDI + S GIEA + + +E+ V YG+ V
Sbjct: 1329 LLETDGTSMMKVLSERDV-DPVRTFSNDICEIFSVLGIEAVRKSVEKEMNTVLQFYGLYV 1387
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1388 NYRHLALLCDVMT 1400
>gi|67597591|ref|XP_666157.1| DNA-directed RNA polymerase II largest chain [Cryptosporidium hominis
TU502]
gi|54657094|gb|EAL35927.1| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain
[Cryptosporidium hominis]
Length = 1895
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 1 METNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 60
M + + +L TDG N+ + + +D + NDI + S GIEA R ++RE++ V
Sbjct: 1364 MVRDNQWVLDTDGCNLEAVLCHT-AIDSTRTISNDITEVFSVLGIEAVRRALLRELRTVI 1422
Query: 61 AVYGIEVDPRHLSLVADYMTH 81
+ G V+ RHL+L+ D MT
Sbjct: 1423 SFDGSYVNYRHLALLCDNMTQ 1443
>gi|66359288|ref|XP_626822.1| DNA-directed RNA polymerase,possible RNA polymerase A/beta'/A''
subunit, long PHYSPTS repeat at
gi|46228363|gb|EAK89262.1| putative DNA-directed RNA polymerase,possible RNA polymerase
A/beta'/A'' subunit, long PHYSPTS repeat at C-terminus
[Cryptosporidium parvum Iowa II]
Length = 1902
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 1 METNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 60
M + + +L TDG N+ + + +D + NDI + S GIEA R ++RE++ V
Sbjct: 1371 MVRDNQWVLDTDGCNLEAVLCHT-AIDSTRTISNDITEVFSVLGIEAVRRALLRELRTVI 1429
Query: 61 AVYGIEVDPRHLSLVADYMTH 81
+ G V+ RHL+L+ D MT
Sbjct: 1430 SFDGSYVNYRHLALLCDNMTQ 1450
>gi|388857575|emb|CCF48724.1| probable RPO31-DNA-directed RNA polymerase III, 160 KD subunit
[Ustilago hordei]
Length = 1400
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 30 KLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH-------S 82
+ + N + M S GIEAA + RE+++ + +G+ +DPRH+ L+AD MT+ +
Sbjct: 1265 QTHTNHVMEMQSVLGIEAARTSVYREIEHTMSAHGMSIDPRHVMLLADTMTYKGEVLGIT 1324
Query: 83 EFDLIIMVSKSWMLDEVKSTT 103
F + M ML + TT
Sbjct: 1325 RFGVAKMKDSVLMLASFEKTT 1345
>gi|324120548|dbj|BAJ78665.1| RNA polymerase II largest subunit [Zorotypus sp. 154-1]
Length = 1862
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + + NDI + S GIEA + + +E+ V YG+ V
Sbjct: 1327 LLETDGTSMMKVLSERDV-DPVRTFSNDICEIFSVLGIEAVRKSVEKEMNTVLQFYGLYV 1385
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1386 NYRHLALLCDVMT 1398
>gi|324120524|dbj|BAJ78653.1| RNA polymerase II largest subunit [Ephemera japonica]
Length = 1660
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + + NDI + S GIEA + + +E+ V YG+ V
Sbjct: 1334 LLETDGTSLMKVLSERDV-DPVRTFSNDICEIFSVLGIEAVRKSVEKEMNQVLQFYGLYV 1392
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1393 NYRHLALLCDVMT 1405
>gi|324120546|dbj|BAJ78664.1| RNA polymerase II largest subunit [Forficula hiromasai]
Length = 1744
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + + NDI + S GIEA + + +E+ V YG+ V
Sbjct: 1329 LLETDGTSMMKVLSERDV-DPVRTFSNDICEIFSVLGIEAVRKSVEKEMNTVLQFYGLYV 1387
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1388 NYRHLALLCDVMT 1400
>gi|373809938|dbj|BAL46439.1| RNA polymerase I largest subunit, partial [Aegilops umbellulata]
gi|373809940|dbj|BAL46440.1| RNA polymerase I largest subunit, partial [Aegilops umbellulata]
Length = 401
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
L+T G++ + L++ KL NDIH M TYG+EAA II EVK VF +
Sbjct: 347 LQTAGLDFEVFWDLQDFLNVRKLTSNDIHAMLRTYGVEAARATIINEVKAVFEPF 401
>gi|373809942|dbj|BAL46441.1| RNA polymerase I largest subunit, partial [Aegilops markgrafii]
gi|373809944|dbj|BAL46442.1| RNA polymerase I largest subunit, partial [Aegilops markgrafii]
Length = 401
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
L+T G++ + L++ KL NDIH M TYG+EAA II EVK VF +
Sbjct: 347 LQTAGLDFEVFWDLQDFLNVRKLTSNDIHAMLRTYGVEAARATIINEVKAVFEPF 401
>gi|336476454|ref|YP_004615595.1| DNA-directed RNA polymerase subunit A'' [Methanosalsum zhilinae DSM
4017]
gi|335929835|gb|AEH60376.1| DNA-directed RNA polymerase, subunit A'' [Methanosalsum zhilinae
DSM 4017]
Length = 385
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMT 80
+D +++Y N+I + S +G+EAA II E G+ VD RH+ LVAD MT
Sbjct: 256 VDASRIYTNNIGEIYSVFGVEAARNAIIHEASETLREQGLTVDDRHIMLVADIMT 310
>gi|324120526|dbj|BAJ78654.1| RNA polymerase II largest subunit [Isonychia japonica]
Length = 1530
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + + NDI + S GIEA + + +E+ V YG+ V
Sbjct: 1313 LLETDGTSLMKVLSERDV-DPVRTFSNDICEIFSVLGIEAVRKSVEKEMNQVLQFYGLYV 1371
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1372 NYRHLALLCDVMT 1384
>gi|403182441|gb|EJY57389.1| AAEL017363-PA [Aedes aegypti]
Length = 1887
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
G+ LL+TDG + + R + D + NDI + GIEA + + +E+ NV YG
Sbjct: 1323 GEWLLETDGTAMMKVLSERDV-DPVRTASNDICEIFQVLGIEAVRKSVEKEMNNVLQFYG 1381
Query: 65 IEVDPRHLSLVADYMT 80
+ V+ RHL+L+ D MT
Sbjct: 1382 LYVNYRHLALLCDVMT 1397
>gi|373810012|dbj|BAL46477.1| RNA polymerase I largest subunit, partial [Triticum aestivum]
Length = 401
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
L+T G++ + L++ KL NDIH M TYG+EAA II EVK VF +
Sbjct: 347 LQTAGLDFEVFWDLQDFLNVRKLTSNDIHAMLRTYGVEAARATIINEVKAVFEPF 401
>gi|373809968|dbj|BAL46455.1| RNA polymerase I largest subunit, partial [Aegilops tauschii subsp.
tauschii]
Length = 401
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
L+T G++ + L++ KL NDIH M TYG+EAA II EVK VF +
Sbjct: 347 LQTAGLDFEVFWDLQDFLNVRKLTSNDIHAMLRTYGVEAARATIINEVKAVFEPF 401
>gi|324120592|dbj|BAJ78687.1| RNA polymerase II largest subunit [Ctenocephalides felis]
Length = 1749
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + + NDI + S GIEA + + +E+ V YG+ V
Sbjct: 1326 LLETDGTSMMKVLSERDV-DPVRTFSNDICEIFSVLGIEAVRKSVEKEMNTVLQFYGLYV 1384
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1385 NYRHLALLCDVMT 1397
>gi|373809966|dbj|BAL46454.1| RNA polymerase I largest subunit, partial [Aegilops tauschii subsp.
strangulata]
Length = 401
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
L+T G++ + L++ KL NDIH M TYG+EAA II EVK VF +
Sbjct: 347 LQTAGLDFEVFWDLQDFLNVRKLTSNDIHAMLRTYGVEAARATIINEVKAVFEPF 401
>gi|373809970|dbj|BAL46456.1| RNA polymerase I largest subunit, partial [Aegilops tauschii]
Length = 398
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
L+T G++ + L++ KL NDIH M TYG+EAA II EVK VF +
Sbjct: 344 LQTAGLDFEVFWDLQDFLNVRKLTSNDIHAMLRTYGVEAARATIINEVKAVFEPF 398
>gi|328722767|ref|XP_001943949.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Acyrthosiphon pisum]
Length = 1958
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + + NDI + S GIEA + + +E+ V YG+ V
Sbjct: 1330 LLETDGTSLMKVLSERDV-DPVRTFSNDICEIFSVLGIEAVRKSVEKEMNTVLQFYGLYV 1388
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1389 NYRHLALLCDVMT 1401
>gi|324120510|dbj|BAJ78646.1| RNA polymerase II largest subunit [Pedetontus unimaculatus]
Length = 1549
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + + NDI + S GIEA + + +E+ V YG+ V
Sbjct: 1309 LLETDGTSLMKVLSERDV-DPVRTFSNDICEIFSVLGIEAVRKSVEKEMNTVLQFYGLYV 1367
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1368 NYRHLALLCDVMT 1380
>gi|161527856|ref|YP_001581682.1| bifunctional DNA-directed RNA polymerase subunit A'/A''
[Nitrosopumilus maritimus SCM1]
gi|160339157|gb|ABX12244.1| DNA-directed RNA polymerase subunit A' [Nitrosopumilus maritimus
SCM1]
Length = 1263
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 7/138 (5%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+++T G NV + + + + D + N++ +A T GIEAA +I E+ + G+EV
Sbjct: 1117 VIQTTGSNVAKVLEVKGI-DKRNVRTNNVFEIAGTLGIEAARNALINELNSTLEDQGLEV 1175
Query: 68 DPRHLSLVADYMTHSEFDLIIMVSKSWMLDEVKSTTARSVTPACEPNSHHDVKKIEFKKQ 127
D R++ LVAD M + + + + + S AR+ P H E ++
Sbjct: 1176 DNRYIMLVADLMCSRGY--MQQIGRHGIAGTKDSVLARAAFEITVPTIAHAALGGEIEQ- 1232
Query: 128 NKILPLVLQNSLTGSSYP 145
L + +N + GS+ P
Sbjct: 1233 ---LKGITENVIVGSNIP 1247
>gi|339252982|ref|XP_003371714.1| DNA-directed RNA polymerase II subunit RPB1 [Trichinella spiralis]
gi|316967997|gb|EFV52341.1| DNA-directed RNA polymerase II subunit RPB1 [Trichinella spiralis]
Length = 1816
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 57/112 (50%), Gaps = 22/112 (19%)
Query: 1 METNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 60
+ET+G LLK +S +D + Y N I + GIEA + + +E+K+V
Sbjct: 1291 LETDGTSLLKV-------LSD--PAVDATRTYSNHICEIFEVLGIEAVRKAVEKEIKHVI 1341
Query: 61 AVYGIEVDPRHLSLVADYMT-------------HSEFDLIIMVSKSWMLDEV 99
+ G V+ RHL+L+ D MT H+E DL++ VS+S ML ++
Sbjct: 1342 SFDGSYVNYRHLALLCDIMTAKGHVDILMEAAAHAEEDLLLGVSESIMLGQL 1393
>gi|347482340|gb|AEO98281.1| DNA-directed RNA polymerase subunit A [Emiliania huxleyi virus 203]
gi|347601121|gb|AEP15607.1| hypothetical protein EQVG_00197 [Emiliania huxleyi virus 207]
Length = 418
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMT 80
+D K+ NDIH + +T GIEAA VI E+ + G +DPRH+ L A MT
Sbjct: 241 VDWTKVMTNDIHNVVNTLGIEAALTVIFNELHSTLTADGSYIDPRHIELTASTMT 295
>gi|299755292|ref|XP_001828577.2| RNA polymerase II large subunit [Coprinopsis cinerea okayama7#130]
gi|298411158|gb|EAU93247.2| RNA polymerase II large subunit [Coprinopsis cinerea okayama7#130]
Length = 1745
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 2 ETNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
E + +L+TDG N+ + +D + Y N+ + + G+EAA +++E++NV
Sbjct: 1319 EKGAEWILETDGTNLKGV-MCLDGVDSTRTYSNNCVEIFTVLGVEAARAALMKEIRNVIE 1377
Query: 62 VYGIEVDPRHLSLVADYMTH 81
G V+ RHL L+ D MTH
Sbjct: 1378 FDGSYVNYRHLGLLCDVMTH 1397
>gi|373809918|dbj|BAL46429.1| RNA polymerase I largest subunit, partial [Triticum monococcum
subsp. aegilopoides]
gi|373809922|dbj|BAL46431.1| RNA polymerase I largest subunit, partial [Triticum monococcum
subsp. monococcum]
gi|373809924|dbj|BAL46432.1| RNA polymerase I largest subunit, partial [Triticum monococcum
subsp. monococcum]
Length = 401
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
L+T G++ + L++ KL NDIH M TYG+EAA II EVK VF +
Sbjct: 347 LQTAGLDFEVFWDLQDFLNVRKLTSNDIHAMLRTYGVEAARATIINEVKAVFEPF 401
>gi|156096993|ref|XP_001614530.1| DNA-directed RNA polymerase II largest subunit [Plasmodium vivax
Sal-1]
gi|148803404|gb|EDL44803.1| DNA-directed RNA polymerase II largest subunit, putative [Plasmodium
vivax]
Length = 2379
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 3 TNGKHL------LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREV 56
TNGK + L TDG N+ +I H+ D K NDI + GIEA R +++E+
Sbjct: 1810 TNGKFVRSSHWVLDTDGCNLEHIFCASHV-DYKKTVSNDIVEIFEVLGIEAVRRALLKEL 1868
Query: 57 KNVFAVYGIEVDPRHLSLVADYMTHSEFDLII 88
+ V + V+ RHLS++ D MT + + I
Sbjct: 1869 RTVISFDSSYVNYRHLSILCDVMTQRGYLMSI 1900
>gi|373809920|dbj|BAL46430.1| RNA polymerase I largest subunit, partial [Triticum monococcum
subsp. aegilopoides]
Length = 401
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
L+T G++ + L++ KL NDIH M TYG+EAA II EVK VF +
Sbjct: 347 LQTAGLDFEVFWDLQDFLNVRKLTSNDIHAMLRTYGVEAARATIINEVKAVFEPF 401
>gi|355570730|ref|ZP_09042000.1| DNA-directed RNA polymerase, subunit A'' [Methanolinea tarda
NOBI-1]
gi|354826012|gb|EHF10228.1| DNA-directed RNA polymerase, subunit A'' [Methanolinea tarda
NOBI-1]
Length = 391
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
+G+++L T+G N+ + + + D + N+I +A GIEAA II E + +
Sbjct: 239 SGEYILYTEGSNLKDVFEVEGV-DTTRTRTNNISEIAQVLGIEAARNAIIHEALSTLSEQ 297
Query: 64 GIEVDPRHLSLVADYM 79
GI VD RH+ LVAD M
Sbjct: 298 GILVDVRHIMLVADMM 313
>gi|161897744|gb|ABX80015.1| RNA polymerase 2 largest subunit [Diploscapter sp. JU359]
Length = 374
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG + + RH+ D + NDI + GIEA + I RE+ NV + G V
Sbjct: 293 LLETDGTALLRVLSERHI-DPKRTSSNDICEIFEVLGIEAVRKAIQREMHNVISFDGSYV 351
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 352 NYRHLALLCDVMT 364
>gi|322712011|gb|EFZ03584.1| DNA-directed RNA polymerase II largest subunit [Metarhizium
anisopliae ARSEF 23]
Length = 1755
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 36/56 (64%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
+D ++ Y ND+ + +GIEAA +++E+ NV A G V+ RH++L+ D MT+
Sbjct: 1341 VDASRTYTNDLWQIVEVFGIEAARSALVKELTNVLAFDGSYVNHRHIALLVDVMTY 1396
>gi|322694724|gb|EFY86546.1| DNA-directed RNA polymerase II largest subunit [Metarhizium acridum
CQMa 102]
Length = 1746
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 36/56 (64%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
+D ++ Y ND+ + +GIEAA +++E+ NV A G V+ RH++L+ D MT+
Sbjct: 1341 VDASRTYTNDLWQIVEVFGIEAARSALVKELTNVLAFDGSYVNHRHIALLVDVMTY 1396
>gi|119719202|ref|YP_919697.1| DNA-directed RNA polymerase, subunit A'' [Thermofilum pendens Hrk
5]
gi|119524322|gb|ABL77694.1| DNA-directed RNA polymerase, subunit A' [Thermofilum pendens Hrk 5]
Length = 403
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
++++ T+G N+ + + D + N+I + GIEAA II+E+K V +G+
Sbjct: 247 EYVILTEGSNLKAVLGIEGV-DPRRTTTNNILEIYEVLGIEAARAAIIKEIKKVLDEHGL 305
Query: 66 EVDPRHLSLVADYMTHS 82
+VD RH+ +VAD MT+S
Sbjct: 306 DVDWRHIMMVADAMTYS 322
>gi|302927295|ref|XP_003054466.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256735407|gb|EEU48753.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 1750
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 36/56 (64%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
+D ++ Y ND+ + +GIEAA +++E+ NV A G V+ RH++L+ D MT+
Sbjct: 1341 VDASRTYTNDLWQVVEVFGIEAARSALVKELTNVLAFDGSYVNHRHIALLTDVMTY 1396
>gi|133433|sp|P09847.2|RPOA2_METTW RecName: Full=DNA-directed RNA polymerase subunit A'';
Short=Subunit C
gi|809728|emb|CAA30839.1| unnamed protein product [Methanothermobacter thermautotrophicus]
Length = 449
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 31/55 (56%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMT 80
+D + NDIH + + GIEAA II E K G+ VD RH+ LVAD MT
Sbjct: 324 VDKVRTTTNDIHEIETVLGIEAARNAIIHEAKRTMEEQGLTVDIRHIMLVADMMT 378
>gi|347601522|gb|AEP16007.1| DNA-dependent RNA polymerase II largest subunit [Emiliania huxleyi
virus 208]
gi|357972677|gb|AET97950.1| RNA polymerase subunit beta [Emiliania huxleyi virus 201]
Length = 1468
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMT 80
+D K+ NDIH + +T GIEAA VI E+ + G +DPRH+ L A MT
Sbjct: 1291 VDWTKVMTNDIHNVVNTLGIEAALTVIFNELHSTLTADGSYIDPRHIELTASTMT 1345
>gi|324120506|dbj|BAJ78644.1| RNA polymerase II largest subunit [Metriocampa sp. 44]
Length = 1738
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + Y NDI + S GIEA + + +E+ V YG+ V
Sbjct: 1308 LLETDGTSLMKVLSERDV-DPVRTYSNDICEIFSVLGIEAVRKSVEKEMNMVLNFYGLYV 1366
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1367 NYRHLALLCDVMT 1379
>gi|333986473|ref|YP_004519080.1| DNA-directed RNA polymerase subunit A'' [Methanobacterium sp.
SWAN-1]
gi|333824617|gb|AEG17279.1| DNA-directed RNA polymerase subunit A'' [Methanobacterium sp.
SWAN-1]
Length = 390
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 7/135 (5%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
T+G N+ + + + D + NDIH + GIEA II E ++ G+ VD R
Sbjct: 249 TEGSNLGAVLKMEGV-DKTRTTTNDIHEVEKVLGIEAGRNAIIHEAQSTMEEQGLTVDVR 307
Query: 71 HLSLVADYMTHSEFDLIIMVSKSWMLDEVKSTTARSVTPACEPNSHHDVKKIEFKKQNKI 130
H+ LVAD MT ++ + + + E S AR+ + E H + + + +
Sbjct: 308 HIMLVADMMTSD--GIVKSIGRHGISGEKASVLARA---SFEETGKH-LLRASIRGEVDH 361
Query: 131 LPLVLQNSLTGSSYP 145
L +++N + G P
Sbjct: 362 LTGIIENIIIGQPIP 376
>gi|402468610|gb|EJW03738.1| hypothetical protein EDEG_01976 [Edhazardia aedis USNM 41457]
Length = 2270
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Query: 1 METNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 60
+E N + + +T+G+N++ + ++D K+Y N+I + GIEAA VI++E+++V
Sbjct: 1764 VEENNQFIFQTEGVNLHDLLSC-PIIDNTKVYSNNIIEVCEVLGIEAAREVILKELRSVI 1822
Query: 61 AVYGIEVDPRHLSLVADYMT 80
G V+ RHL L+AD MT
Sbjct: 1823 ENEGY-VNIRHLMLLADVMT 1841
>gi|548826|sp|Q03586.1|RPOA2_THEAC RecName: Full=DNA-directed RNA polymerase subunit A''
gi|48093|emb|CAA48282.1| DNA-directed RNA polymerase [Thermoplasma acidophilum]
Length = 508
Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/57 (45%), Positives = 32/57 (56%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHS 82
+D + Y NDI +A+ GIEAA I+ E G+ VD RHL LVAD MT S
Sbjct: 377 VDPTRTYTNDIVEIANVLGIEAARNAILNEALRTLQEQGLNVDVRHLMLVADMMTFS 433
>gi|324120584|dbj|BAJ78683.1| RNA polymerase II largest subunit [Lucidina biplagiata]
Length = 1685
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + + NDI + S GIEA + + +E+ V YG+ V
Sbjct: 1325 LLETDGTSLMKVLSERDV-DPVRTFSNDICEIFSVLGIEAVRKSVEKEMNAVLQFYGLYV 1383
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1384 NYRHLALLCDVMT 1396
>gi|324120576|dbj|BAJ78679.1| RNA polymerase II largest subunit [Inocellia japonica]
Length = 1913
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + + NDI + S GIEA + + +E+ V YG+ V
Sbjct: 1332 LLETDGTSMMKVLSERDV-DPVRTFSNDICEIFSVLGIEAVRKSVEKEMNAVLQFYGLYV 1390
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1391 NYRHLALLCDVMT 1403
>gi|324120514|dbj|BAJ78648.1| RNA polymerase II largest subunit [Nipponatelura sp. 66-1]
Length = 1718
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + + NDI + S GIEA + + +E+ V YG+ V
Sbjct: 1308 LLETDGTSLMKVLSERDV-DPVRTFSNDICEIFSVLGIEAVRKSVEKEMNAVLQFYGLYV 1366
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1367 NYRHLALLCDVMT 1379
>gi|16081521|ref|NP_393872.1| DNA-directed RNA polymerase subunit A'' [Thermoplasma acidophilum
DSM 1728]
gi|10639564|emb|CAC11536.1| probable DNA-directed RNA polymerase, chain A [Thermoplasma
acidophilum]
Length = 511
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/57 (45%), Positives = 32/57 (56%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHS 82
+D + Y NDI +A+ GIEAA I+ E G+ VD RHL LVAD MT S
Sbjct: 380 VDPTRTYTNDIVEIANVLGIEAARNAILNEALRTLQEQGLNVDVRHLMLVADMMTFS 436
>gi|324120540|dbj|BAJ78661.1| RNA polymerase II largest subunit [Teleogryllus emma]
Length = 1909
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + + NDI + S GIEA + + +E+ V YG+ V
Sbjct: 1330 LLETDGTSMMKVLSERDV-DPVRTFSNDICEIFSVLGIEAVRKSVEKEMNAVLQFYGLYV 1388
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1389 NYRHLALLCDVMT 1401
>gi|270010112|gb|EFA06560.1| hypothetical protein TcasGA2_TC009471 [Tribolium castaneum]
Length = 1899
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + + NDI + S GIEA + + +E+ V YG+ V
Sbjct: 1327 LLETDGTSMMKVLSERDV-DPVRTFSNDICEIFSVLGIEAVRKSVEKEMNAVLQFYGLYV 1385
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1386 NYRHLALLCDVMT 1398
>gi|324120580|dbj|BAJ78681.1| RNA polymerase II largest subunit [Stichotrema asahinai]
Length = 1696
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + + NDI + S GIEA + + +E+ V YG+ V
Sbjct: 1324 LLETDGTSLMKVLSERDV-DPVRTFSNDICEIFSVLGIEAVRKSVEKEMNAVLQFYGLYV 1382
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1383 NYRHLALLCDVMT 1395
>gi|261403644|ref|YP_003247868.1| RNA polymerase Rpb1 domain 5 [Methanocaldococcus vulcanius M7]
gi|261370637|gb|ACX73386.1| RNA polymerase Rpb1 domain 5 [Methanocaldococcus vulcanius M7]
Length = 799
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 2 ETNGK--HLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNV 59
E +GK ++L + G N+ + + + D + N+I + GIEAA II E++N
Sbjct: 638 ERDGKEEYVLYSQGSNLREVFKIEGV-DTTRTTTNNIIEIQEVLGIEAARNAIINEMRNT 696
Query: 60 FAVYGIEVDPRHLSLVADYMT 80
G+EVD RHL LVAD MT
Sbjct: 697 LEQQGLEVDVRHLMLVADIMT 717
>gi|150401217|ref|YP_001324983.1| DNA-directed RNA polymerase subunit A'' [Methanococcus aeolicus
Nankai-3]
gi|166229257|sp|A6UV49.1|RPOA2_META3 RecName: Full=DNA-directed RNA polymerase subunit A''
gi|150013920|gb|ABR56371.1| DNA-directed RNA polymerase, subunit A'' [Methanococcus aeolicus
Nankai-3]
Length = 397
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 2 ETNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
+T G+++L ++G N++ + + + D+ + N+I + GIEAA II E+ V
Sbjct: 232 DTMGEYILHSEGSNLSAVFEIDGV-DMVRTTSNNIVEIQDVLGIEAARNAIINEISGVLN 290
Query: 62 VYGIEVDPRHLSLVADYMT 80
G+ VD RHL ++AD MT
Sbjct: 291 QQGLNVDIRHLMVIADIMT 309
>gi|324120574|dbj|BAJ78678.1| RNA polymerase II largest subunit [Protohermes grandis]
Length = 1633
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + + NDI + S GIEA + + +E+ V YG+ V
Sbjct: 1332 LLETDGTSMMKVLSERDV-DPVRTFSNDICEIFSVLGIEAVRKSVEKEMNAVLQFYGLYV 1390
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1391 NYRHLALLCDVMT 1403
>gi|409051067|gb|EKM60543.1| hypothetical protein PHACADRAFT_246551 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1753
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDG+N+ + + D + Y N + GIEAA I++E++ V G V
Sbjct: 1323 VLETDGVNLKAVMTVDGV-DFRRTYSNSCVEVFGVLGIEAARAAIMKELRGVIEFDGSYV 1381
Query: 68 DPRHLSLVADYMTH 81
+ RHL+L+ D MTH
Sbjct: 1382 NYRHLALLCDLMTH 1395
>gi|91085731|ref|XP_973470.1| PREDICTED: similar to GA13798-PA [Tribolium castaneum]
Length = 2007
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + + NDI + S GIEA + + +E+ V YG+ V
Sbjct: 1332 LLETDGTSMMKVLSERDV-DPVRTFSNDICEIFSVLGIEAVRKSVEKEMNAVLQFYGLYV 1390
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1391 NYRHLALLCDVMT 1403
>gi|324120528|dbj|BAJ78655.1| RNA polymerase II largest subunit [Phraortes illepidus]
Length = 1563
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + + NDI + S GIEA + + +E+ V YG+ V
Sbjct: 1308 LLETDGTSMMKVLSERDV-DPVRTFSNDICEIFSVLGIEAVRKSVEKEMNTVLNFYGLYV 1366
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1367 NYRHLALLCDVMT 1379
>gi|440494147|gb|ELQ76552.1| RNA polymerase II, large subunit, partial [Trachipleistophora
hominis]
Length = 1748
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
+ +L+T G N+ I ++ D Y ND+ + + GIEAA V+I+E+K V G
Sbjct: 1446 RWMLQTSGTNLLEILHNEYITDC---YSNDLTEVCAVLGIEAARNVLIKEIKKVIESDGS 1502
Query: 66 EVDPRHLSLVADYMTHS 82
V+ RHL L+ D MT +
Sbjct: 1503 YVNQRHLMLLGDIMTST 1519
>gi|157841464|gb|ABV83198.1| RNA polymerase 2 [Protorhabditis sp. JB122]
Length = 595
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG + + RH+ D + NDI + GIEA + I RE+ NV + G V
Sbjct: 502 LLETDGTALLRVLSERHI-DPRRTSSNDICEIFEVLGIEAVRKAIQREMHNVISFDGSYV 560
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 561 NYRHLALLCDVMT 573
>gi|343427900|emb|CBQ71425.1| probable RPO31-DNA-directed RNA polymerase III, 160 KD subunit
[Sporisorium reilianum SRZ2]
Length = 1400
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 32 YVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH-------SEF 84
+ N + M + GIEAA + RE+++ + +G+ +DPRH+ L+AD MT+ + F
Sbjct: 1267 HTNHVMEMQTVLGIEAARTSVYREIEHTMSAHGMSIDPRHIMLLADTMTYKGEVLGITRF 1326
Query: 85 DLIIMVSKSWMLDEVKSTT 103
+ M ML + TT
Sbjct: 1327 GVAKMKDSVLMLASFEKTT 1345
>gi|88601372|ref|YP_501550.1| DNA-directed RNA polymerase, subunit A'' [Methanospirillum hungatei
JF-1]
gi|88186834|gb|ABD39831.1| DNA-directed RNA polymerase, subunit A' [Methanospirillum hungatei
JF-1]
Length = 653
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
+G+++L T+G N+ + R + D + N+I+ ++ G+EAA II E +
Sbjct: 505 SGEYILYTEGSNLKDVFAIRGV-DTTRTRTNNINEISQVLGVEAARNAIINEALATLSEQ 563
Query: 64 GIEVDPRHLSLVADYM 79
GI VD RH+ LVAD M
Sbjct: 564 GIMVDVRHIMLVADMM 579
>gi|324120566|dbj|BAJ78674.1| RNA polymerase II largest subunit [Uroleucon nigrotuberculatum]
Length = 1862
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + + NDI + S GIEA + + +E+ V YG+ V
Sbjct: 1330 LLETDGTSLMKVLSERDV-DPVRTFSNDICEIFSVLGIEAVRKSVEKEMNTVLNFYGLYV 1388
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1389 NYRHLALLCDVMT 1401
>gi|374724392|gb|EHR76472.1| DNA-directed RNA polymerase subunit A [uncultured marine group II
euryarchaeote]
Length = 519
Score = 48.9 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 2 ETNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
+ G++ L T G N+ +S+ +D + Y N+I + GIEAA + II E++
Sbjct: 370 DKTGEYYLSTIGSNLTRVSEIE-TIDRTRTYTNNIIEIYDFLGIEAARQAIINELQATLD 428
Query: 62 VYGIEVDPRHLSLVADYMT 80
+EVD RHL +VAD MT
Sbjct: 429 GARLEVDVRHLLMVADVMT 447
>gi|324120542|dbj|BAJ78662.1| RNA polymerase II largest subunit [Oyamia lugubris]
Length = 1742
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + + NDI + S GIEA + + +E+ V YG+ V
Sbjct: 1330 LLETDGTSMMKVLSERDV-DPIRTFSNDICEIFSVLGIEAVRKSVEKEMNTVLNFYGLYV 1388
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1389 NYRHLALLCDVMT 1401
>gi|193700005|ref|XP_001943054.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Acyrthosiphon pisum]
Length = 1862
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + + NDI + S GIEA + + +E+ V YG+ V
Sbjct: 1330 LLETDGTSLMKVLSERDV-DPVRTFSNDICEIFSVLGIEAVRKSVEKEMNTVLNFYGLYV 1388
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1389 NYRHLALLCDVMT 1401
>gi|340344217|ref|ZP_08667349.1| DNA-directed RNA polymerase subunit A [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339519358|gb|EGP93081.1| DNA-directed RNA polymerase subunit A [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 1263
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 65/138 (47%), Gaps = 7/138 (5%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+++T G N+ + + + + D + N++ +A T GIEA+ +I E+KN G+EV
Sbjct: 1117 VIQTTGSNIAKVLEVQGI-DKKNVRTNNVFEIAGTLGIEASRNALINELKNTLEDQGLEV 1175
Query: 68 DPRHLSLVADYMTHSEFDLIIMVSKSWMLDEVKSTTARSVTPACEPNSHHDVKKIEFKKQ 127
D R++ LV+D M + + + + + S AR+ P H E ++
Sbjct: 1176 DNRYIMLVSDLMCSRGY--MQQIGRHGIAGTKDSVLARAAFEITVPTIAHAALAGEVEQ- 1232
Query: 128 NKILPLVLQNSLTGSSYP 145
L + +N + GS P
Sbjct: 1233 ---LKGITENVIVGSMIP 1247
>gi|316997021|dbj|BAJ52638.1| RNA polymerase III largest subunit [Monosiga ovata]
Length = 931
Score = 48.5 bits (114), Expect = 8e-04, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 12/74 (16%)
Query: 7 HLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIE 66
H++ T G+ ++ H+LD+ + T GIEAA II EV A YG+
Sbjct: 775 HVMGTRGVLGTRVTS-NHILDVER-----------TLGIEAARATIISEVGQTVAPYGVS 822
Query: 67 VDPRHLSLVADYMT 80
+D RHLS++AD MT
Sbjct: 823 IDWRHLSILADLMT 836
>gi|308229944|gb|ADO24379.1| RNA polymerase II large subunit, partial [Drosophila angularis]
Length = 1847
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
G+ LL+TDG ++ + R + D + NDI + GIEA R + +E+ V YG
Sbjct: 1305 GEWLLETDGTSMMKVLSERDV-DPIRTSSNDICEIFQVLGIEAVRRSVEKEMNAVLQFYG 1363
Query: 65 IEVDPRHLSLVADYMT 80
+ V+ RHL+L+ D MT
Sbjct: 1364 LYVNYRHLALLCDVMT 1379
>gi|71024147|ref|XP_762303.1| hypothetical protein UM06156.1 [Ustilago maydis 521]
gi|46101808|gb|EAK87041.1| hypothetical protein UM06156.1 [Ustilago maydis 521]
Length = 1400
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 29 NKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH------- 81
+ + N + M + GIEAA + RE+++ + +G+ +DPRH+ L+AD MT+
Sbjct: 1264 TQTHTNHVMEMQAVLGIEAARTSVYREIEHTMSAHGMSIDPRHIMLLADTMTYKGEVLGI 1323
Query: 82 SEFDLIIMVSKSWMLDEVKSTT 103
+ F + M ML + TT
Sbjct: 1324 TRFGVAKMKDSVLMLASFEKTT 1345
>gi|408388091|gb|EKJ67784.1| hypothetical protein FPSE_12056 [Fusarium pseudograminearum CS3096]
Length = 1758
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
+D + Y ND++ + +GIEAA + +E+ NV A G V+ RH++L+ D MT+
Sbjct: 1345 VDATRTYTNDLYQIVEVFGIEAARSALAKELTNVLAFDGSYVNHRHIALLVDVMTY 1400
>gi|324120564|dbj|BAJ78673.1| RNA polymerase II largest subunit [Bemisia tabaci]
Length = 1793
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + + NDI + + GIEA + + +E+ V YG+ V
Sbjct: 1329 LLETDGTSLMKVLSERDV-DPVRTFSNDICEIFAVLGIEAVRKSVEKEMNTVLQFYGLYV 1387
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1388 NYRHLALLCDVMT 1400
>gi|46108068|ref|XP_381092.1| hypothetical protein FG00916.1 [Gibberella zeae PH-1]
Length = 1758
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
+D + Y ND++ + +GIEAA + +E+ NV A G V+ RH++L+ D MT+
Sbjct: 1345 VDATRTYTNDLYQIVEVFGIEAARSALAKELTNVLAFDGSYVNHRHIALLVDVMTY 1400
>gi|5911933|emb|CAB55942.1| hypothetical protein [Homo sapiens]
Length = 95
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/24 (87%), Positives = 22/24 (91%)
Query: 57 KNVFAVYGIEVDPRHLSLVADYMT 80
K+VFAVYGI VDPRHLSLVADYM
Sbjct: 1 KDVFAVYGIAVDPRHLSLVADYMC 24
>gi|449550549|gb|EMD41513.1| hypothetical protein CERSUDRAFT_110068 [Ceriporiopsis subvermispora
B]
Length = 1749
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDG+N+ + + D + Y N + + GIEAA I++E++ V G V
Sbjct: 1322 ILETDGVNLKAVMCIDGV-DFKRTYSNSCVEIFNVLGIEAARAAIMKELRGVIEFDGSYV 1380
Query: 68 DPRHLSLVADYMTH 81
+ RHL+L+ D MTH
Sbjct: 1381 NYRHLALLCDLMTH 1394
>gi|429964462|gb|ELA46460.1| hypothetical protein VCUG_02055 [Vavraia culicis 'floridensis']
Length = 1583
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
N K L+T G N+ I ++ D Y ND+ + + GIEAA V+I+E+K V
Sbjct: 1273 NKKWKLQTSGTNLIEILHNEYITDS---YSNDLMEVCAVLGIEAARNVLIKEIKKVIESD 1329
Query: 64 GIEVDPRHLSLVADYMTHS 82
G V+ RHL L+ D MT +
Sbjct: 1330 GSYVNQRHLMLLGDIMTST 1348
>gi|300122349|emb|CBK22921.2| unnamed protein product [Blastocystis hominis]
Length = 1576
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 33/55 (60%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMT 80
+D K N + + S GIEAA V+I+EV N + YG+ +D RH L+AD MT
Sbjct: 1296 VDHTKTVTNHVLEINSVLGIEAARTVLIQEVSNTYGSYGLSIDIRHQMLLADCMT 1350
>gi|373809984|dbj|BAL46463.1| RNA polymerase I largest subunit, partial [Triticum dicoccoides]
gi|373809988|dbj|BAL46465.1| RNA polymerase I largest subunit, partial [Triticum dicoccoides]
gi|373809992|dbj|BAL46467.1| RNA polymerase I largest subunit, partial [Triticum turgidum subsp.
dicoccon]
gi|373809996|dbj|BAL46469.1| RNA polymerase I largest subunit, partial [Triticum turgidum subsp.
paleocolchicum]
gi|373810000|dbj|BAL46471.1| RNA polymerase I largest subunit, partial [Triticum durum]
gi|373810004|dbj|BAL46473.1| RNA polymerase I largest subunit, partial [Triticum carthlicum]
gi|373810008|dbj|BAL46475.1| RNA polymerase I largest subunit, partial [Triticum aestivum]
Length = 401
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
L+T G++ + L++ KL NDIH M TYG+EAA II EVK VF +
Sbjct: 347 LQTAGLDFEVFWDLQDFLNVCKLTSNDIHAMLRTYGVEAARATIINEVKAVFEPF 401
>gi|409049560|gb|EKM59037.1| hypothetical protein PHACADRAFT_169499 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1403
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 34 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH-------SEFDL 86
N + A GIEAA R II E++ A +G+ +DPRH+ L+ D MT+ + F +
Sbjct: 1270 NHVIETAQVLGIEAARRAIINEIQYTMASHGMSIDPRHVMLLGDVMTYKGEVLGITRFGV 1329
Query: 87 IIMVSKSWMLDEVKSTT 103
M ML + TT
Sbjct: 1330 AKMKDSVLMLASFEKTT 1346
>gi|308229952|gb|ADO24383.1| RNA polymerase II large subunit, partial [Drosophila guttifera]
Length = 1872
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
G+ LL+TDG ++ + R + D + NDI + GIEA + + +E+ V YG
Sbjct: 1317 GEWLLETDGTSMMKVLSERDV-DPQRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYG 1375
Query: 65 IEVDPRHLSLVADYMT 80
+ V+ RHL+L+ D MT
Sbjct: 1376 LYVNYRHLALLCDVMT 1391
>gi|410670215|ref|YP_006922586.1| DNA-directed RNA polymerase subunit A'' [Methanolobus psychrophilus
R15]
gi|409169343|gb|AFV23218.1| DNA-directed RNA polymerase subunit A'' [Methanolobus psychrophilus
R15]
Length = 380
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
++ L T+G + + Q + D+ + Y N++ + +GIEAA II E N G+
Sbjct: 237 EYTLYTEGSQLKEVLQIEGV-DVTRTYTNNVEEIYDVFGIEAARNAIITEANNTLGEQGL 295
Query: 66 EVDPRHLSLVADYM 79
VD RH+ LV+D M
Sbjct: 296 TVDIRHIMLVSDIM 309
>gi|409082995|gb|EKM83352.1| hypothetical protein AGABI1DRAFT_65857 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1785
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDG+N+ + + D + Y N + + GIEAA I++E+++V G V
Sbjct: 1316 VLETDGVNLKTVMCIDGV-DFTRTYSNSCVEIFNVLGIEAARAAIMKELRSVIEFDGSYV 1374
Query: 68 DPRHLSLVADYMTH 81
+ RHL+L+ D MTH
Sbjct: 1375 NYRHLALLCDLMTH 1388
>gi|342878262|gb|EGU79617.1| hypothetical protein FOXB_09900 [Fusarium oxysporum Fo5176]
Length = 1751
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
+D + Y ND++ + +GIEAA + +E+ NV A G V+ RH++L+ D MT+
Sbjct: 1343 VDATRTYTNDLYQIVEVFGIEAARAALAKELTNVLAFDGSYVNHRHIALLVDVMTY 1398
>gi|426201955|gb|EKV51878.1| hypothetical protein AGABI2DRAFT_215454, partial [Agaricus bisporus
var. bisporus H97]
Length = 1800
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDG+N+ + + D + Y N + + GIEAA I++E+++V G V
Sbjct: 1316 VLETDGVNLKTVMCIDGV-DFTRTYSNSCVEIFNVLGIEAARAAIMKELRSVIEFDGSYV 1374
Query: 68 DPRHLSLVADYMTH 81
+ RHL+L+ D MTH
Sbjct: 1375 NYRHLALLCDLMTH 1388
>gi|413915220|gb|AFW21472.1| RNA polymerase II largest subunit [Epichloe elymi]
Length = 1754
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
+D + Y ND+ + +GIEAA +++E+ NV A G V+ RH++L+ D MT+
Sbjct: 1346 VDPTRTYTNDLWQIVEVFGIEAARSALVKELTNVLAFDGSYVNHRHIALLVDVMTY 1401
>gi|407461850|ref|YP_006773167.1| bifunctional DNA-directed RNA polymerase subunit A'/A'' [Candidatus
Nitrosopumilus koreensis AR1]
gi|407045472|gb|AFS80225.1| bifunctional DNA-directed RNA polymerase subunit A'/A'' [Candidatus
Nitrosopumilus koreensis AR1]
Length = 1263
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 7/138 (5%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+++T G NV + + + + D + N++ +A T GIEAA +I E+ + G+EV
Sbjct: 1117 VIQTTGSNVAKVLEVKGI-DKKNVRTNNVFEIAGTLGIEAARNSLINELNSTLEDQGLEV 1175
Query: 68 DPRHLSLVADYMTHSEFDLIIMVSKSWMLDEVKSTTARSVTPACEPNSHHDVKKIEFKKQ 127
D R++ LVAD M + + + + + S AR+ P H E ++
Sbjct: 1176 DNRYIMLVADLMCSRGY--MQQIGRHGIAGTKDSVLARAAFEITVPTIAHAALGGEIEQ- 1232
Query: 128 NKILPLVLQNSLTGSSYP 145
L + +N + GS+ P
Sbjct: 1233 ---LKGITENVIVGSNIP 1247
>gi|413915246|gb|AFW21485.1| RNA polymerase II largest subunit [Claviceps purpurea]
Length = 1756
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 20 SQYRHLLDLN-----KLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSL 74
S R +L +N + Y ND+ + +GIEAA +++E+ NV A G V+ RH++L
Sbjct: 1337 SSLREVLSVNGVDPTRTYTNDLWQIVEVFGIEAARSALVKELTNVLAFDGSYVNHRHIAL 1396
Query: 75 VADYMTH 81
+ D MT+
Sbjct: 1397 LVDVMTY 1403
>gi|50310581|ref|XP_455310.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644446|emb|CAG98018.1| KLLA0F05071p [Kluyveromyces lactis]
Length = 1720
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDG+N++ + + D +++Y N + + GIEA + REV NV A G V
Sbjct: 1306 VLETDGVNLSEVMTVSGV-DGSRIYTNSFIDIMNVLGIEAGRAALYREVYNVIASDGSYV 1364
Query: 68 DPRHLSLVADYMTHSEF 84
+ RH++L+ D MT F
Sbjct: 1365 NYRHMALLVDVMTSQGF 1381
>gi|413915244|gb|AFW21484.1| RNA polymerase II largest subunit [Claviceps paspali]
Length = 1764
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
+D + Y ND+ + +GIEAA +++E+ NV A G V+ RH++L+ D MT+
Sbjct: 1346 VDPTRTYTNDLWQIVEVFGIEAARSALVKELTNVLAFDGSYVNHRHIALLVDVMTY 1401
>gi|413915228|gb|AFW21476.1| RNA polymerase II largest subunit [Epichloe festucae]
Length = 1756
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
+D + Y ND+ + +GIEAA +++E+ NV A G V+ RH++L+ D MT+
Sbjct: 1346 VDPTRTYTNDLWQIVEVFGIEAARSALVKELTNVLAFDGSYVNHRHIALLVDVMTY 1401
>gi|435852041|ref|YP_007313627.1| DNA-directed RNA polymerase, subunit A'' [Methanomethylovorans
hollandica DSM 15978]
gi|433662671|gb|AGB50097.1| DNA-directed RNA polymerase, subunit A'' [Methanomethylovorans
hollandica DSM 15978]
Length = 380
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
+++L T+G + + + + D+++ Y N+I + +GIEAA II+E + G+
Sbjct: 237 EYMLYTEGSQLKKVLEVEGV-DISRTYTNNISEIYDVFGIEAARNAIIKEATSTLGEQGL 295
Query: 66 EVDPRHLSLVADYM 79
VD RH+ LV+D M
Sbjct: 296 TVDIRHIMLVSDIM 309
>gi|413915226|gb|AFW21475.1| RNA polymerase II largest subunit [Epichloe amarillans]
Length = 1752
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
+D + Y ND+ + +GIEAA +++E+ NV A G V+ RH++L+ D MT+
Sbjct: 1346 VDPTRTYTNDLWQIVEVFGIEAARSALVKELTNVLAFDGSYVNHRHIALLVDVMTY 1401
>gi|413915218|gb|AFW21471.1| RNA polymerase II largest subunit [Epichloe typhina]
Length = 1746
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
+D + Y ND+ + +GIEAA +++E+ NV A G V+ RH++L+ D MT+
Sbjct: 1346 VDPTRTYTNDLWQIVEVFGIEAARSALVKELTNVLAFDGSYVNHRHIALLVDVMTY 1401
>gi|167385199|ref|XP_001737245.1| DNA-directed RNA polymerase III subunit RPC1 [Entamoeba dispar
SAW760]
gi|165900031|gb|EDR26493.1| DNA-directed RNA polymerase III subunit RPC1, putative [Entamoeba
dispar SAW760]
Length = 1379
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 29/47 (61%)
Query: 34 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMT 80
N I + GIEAA II E+KNV YG+ +D RHL L++D MT
Sbjct: 1248 NHIAVVEKVLGIEAARSTIISEIKNVMDAYGLSIDVRHLLLLSDLMT 1294
>gi|156937039|ref|YP_001434835.1| DNA-directed RNA polymerase subunit A [Ignicoccus hospitalis
KIN4/I]
gi|156566023|gb|ABU81428.1| DNA-directed RNA polymerase, subunit A [Ignicoccus hospitalis
KIN4/I]
Length = 422
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
+++L TDG N+ + + + D + + I + GIEAA + II E+ +V G+
Sbjct: 260 EYVLVTDGSNLAQVLEVEGV-DPTRTVSDSIKEIEEVLGIEAARQAIINEILDVLENQGL 318
Query: 66 EVDPRHLSLVADYMTHS 82
+VD RH+ L+AD MT S
Sbjct: 319 DVDRRHIMLLADAMTWS 335
>gi|413915224|gb|AFW21474.1| RNA polymerase II largest subunit [Epichloe typhina]
Length = 1746
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
+D + Y ND+ + +GIEAA +++E+ NV A G V+ RH++L+ D MT+
Sbjct: 1346 VDPTRTYTNDLWQIVEVFGIEAARSALVKELTNVLAFDGSYVNHRHIALLVDVMTY 1401
>gi|413915222|gb|AFW21473.1| RNA polymerase II largest subunit [Epichloe glyceriae]
Length = 1761
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
+D + Y ND+ + +GIEAA +++E+ NV A G V+ RH++L+ D MT+
Sbjct: 1346 VDPTRTYTNDLWQIVEVFGIEAARSALVKELTNVLAFDGSYVNHRHIALLVDVMTY 1401
>gi|413915248|gb|AFW21486.1| RNA polymerase II largest subunit [Neotyphodium aotearoae]
Length = 1737
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
+D + Y ND+ + +GIEAA +++E+ NV A G V+ RH++L+ D MT+
Sbjct: 1346 VDPTRTYTNDLWQIVEVFGIEAARSALVKELTNVLAFDGSYVNHRHIALLVDVMTY 1401
>gi|413915230|gb|AFW21477.1| RNA polymerase II largest subunit [Epichloe festucae]
Length = 1756
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
+D + Y ND+ + +GIEAA +++E+ NV A G V+ RH++L+ D MT+
Sbjct: 1346 VDPTRTYTNDLWQIVEVFGIEAARSALVKELTNVLAFDGSYVNHRHIALLVDVMTY 1401
>gi|413915242|gb|AFW21483.1| RNA polymerase II largest subunit [Claviceps fusiformis]
Length = 1761
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
+D + Y ND+ + +GIEAA +++E+ NV A G V+ RH++L+ D MT+
Sbjct: 1346 VDPTRTYTNDLWQIVEVFGIEAARSALVKELTNVLAFDGSYVNHRHIALLVDVMTY 1401
>gi|407043155|gb|EKE41776.1| DNA-directed RNA polymerase III largest subunit, putative [Entamoeba
nuttalli P19]
Length = 1379
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 29/47 (61%)
Query: 34 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMT 80
N I + GIEAA II E+KNV YG+ +D RHL L++D MT
Sbjct: 1248 NHIAVVEKVLGIEAARSTIISEIKNVMDAYGLSIDVRHLLLLSDLMT 1294
>gi|413915240|gb|AFW21482.1| RNA polymerase II largest subunit [Balansia obtecta]
Length = 1760
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
+D + Y ND+ + +GIEAA +++E+ NV A G V+ RH++L+ D MT+
Sbjct: 1346 VDPTRTYTNDLWQIVEVFGIEAARSALVKELTNVLAFDGSYVNHRHIALLVDVMTY 1401
>gi|413915236|gb|AFW21480.1| RNA polymerase II largest subunit [Periglandula ipomoeae]
Length = 1760
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
+D + Y ND+ + +GIEAA +++E+ NV A G V+ RH++L+ D MT+
Sbjct: 1346 VDPTRTYTNDLWQIVEVFGIEAARSALVKELTNVLAFDGSYVNHRHIALLVDVMTY 1401
>gi|324120512|dbj|BAJ78647.1| RNA polymerase II largest subunit [Petrobiellus takunagae]
Length = 1882
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + + NDI + + GIEA + + +E+ V YG+ V
Sbjct: 1309 LLETDGTSLMKVLSERDV-DPVRTFSNDICEIFAVLGIEAVRKSVEKEMNTVLQFYGLYV 1367
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1368 NYRHLALLCDVMT 1380
>gi|67476290|ref|XP_653748.1| DNA-directed RNA polymerase III largest subunit [Entamoeba
histolytica HM-1:IMSS]
gi|56470729|gb|EAL48362.1| DNA-directed RNA polymerase III largest subunit, putative [Entamoeba
histolytica HM-1:IMSS]
gi|449705808|gb|EMD45780.1| DNA-directed RNA polymerase III largest subunit, putative [Entamoeba
histolytica KU27]
Length = 1379
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 29/47 (61%)
Query: 34 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMT 80
N I + GIEAA II E+KNV YG+ +D RHL L++D MT
Sbjct: 1248 NHIAVVEKVLGIEAARSTIISEIKNVMDAYGLSIDVRHLLLLSDLMT 1294
>gi|413915238|gb|AFW21481.1| RNA polymerase II largest subunit [Aciculosporium take]
Length = 1761
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
+D + Y ND+ + +GIEAA +++E+ NV A G V+ RH++L+ D MT+
Sbjct: 1346 VDPTRTYTNDLWQIVEVFGIEAARSALVKELTNVLAFDGSYVNHRHIALLVDVMTY 1401
>gi|238567272|ref|XP_002386208.1| hypothetical protein MPER_15635 [Moniliophthora perniciosa FA553]
gi|215437477|gb|EEB87138.1| hypothetical protein MPER_15635 [Moniliophthora perniciosa FA553]
Length = 108
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 24/33 (72%)
Query: 48 ANRVIIREVKNVFAVYGIEVDPRHLSLVADYMT 80
A I+RE+ VF YGI+VD RHL L+ADYMT
Sbjct: 2 ARAAILREMSGVFGAYGIQVDRRHLELIADYMT 34
>gi|170100352|ref|XP_001881394.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644073|gb|EDR08324.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 1742
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDG+N+ + + D + Y N + + GIEAA I++E++ V G V
Sbjct: 1316 VLETDGVNLKTVMCIDGV-DFKRTYSNSCVEIFNVLGIEAARAAIMKELRGVIEFDGSYV 1374
Query: 68 DPRHLSLVADYMTH 81
+ RHL+L+ D MTH
Sbjct: 1375 NYRHLALLCDLMTH 1388
>gi|430812931|emb|CCJ29676.1| unnamed protein product [Pneumocystis jirovecii]
Length = 1762
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDGIN+ + ++ D + Y N + GIEA +++E++NV G V
Sbjct: 1314 VLETDGINLAEVMAVENV-DPRRTYSNSFVEILQVLGIEATRAALLKELRNVIEFDGSYV 1372
Query: 68 DPRHLSLVADYMT 80
+ RHLSL+AD MT
Sbjct: 1373 NYRHLSLLADTMT 1385
>gi|413915232|gb|AFW21478.1| RNA polymerase II largest subunit [Neotyphodium gansuense]
Length = 1761
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
+D + Y ND+ + +GIEAA +++E+ NV A G V+ RH++L+ D MT+
Sbjct: 1346 VDPTRTYTNDLWQVVEVFGIEAARSALVKELTNVLAFDGSYVNHRHIALLVDVMTY 1401
>gi|440296621|gb|ELP89407.1| DNA-directed RNA polymerase III subunit RPC1, putative [Entamoeba
invadens IP1]
Length = 1381
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%)
Query: 33 VNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMT 80
N I + GIEAA II E+KNV YG+ +D RHL L++D MT
Sbjct: 1249 CNHIMVVEKVLGIEAARSTIISEIKNVMDAYGLSIDIRHLLLLSDLMT 1296
>gi|48477329|ref|YP_023035.1| DNA-directed RNA polymerase subunit A'' [Picrophilus torridus DSM
9790]
gi|48429977|gb|AAT42842.1| DNA-directed RNA polymerase subunit A'''' [Picrophilus torridus DSM
9790]
Length = 508
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 20 SQYRHLLDLNKL-----YVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSL 74
S + +LD++++ Y NDI + GIEAA I E + + G+ VD RHL L
Sbjct: 365 SNLKGVLDIDEVDPTRTYTNDIIEIEQVLGIEAARNAIYLEAERTLSEQGLNVDKRHLML 424
Query: 75 VADYMTHS 82
VAD MT S
Sbjct: 425 VADMMTFS 432
>gi|413915234|gb|AFW21479.1| RNA polymerase II largest subunit [Neotyphodium gansuense var.
inebrians]
Length = 1761
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
+D + Y ND+ + +GIEAA +++E+ NV A G V+ RH++L+ D MT+
Sbjct: 1346 VDPTRTYTNDLWQVVEVFGIEAARSALVKELTNVLAFDGSYVNHRHIALLVDVMTY 1401
>gi|324120556|dbj|BAJ78669.1| RNA polymerase II largest subunit [Thrips palmi]
Length = 1708
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + + NDI + GIEA + + +E+ V + YG+ V
Sbjct: 1309 LLETDGTSLMKVLSERDV-DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLSFYGLYV 1367
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1368 NYRHLALLCDVMT 1380
>gi|324120578|dbj|BAJ78680.1| RNA polymerase II largest subunit [Chrysoperla nipponensis]
Length = 1705
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG + + R + D + + NDI + S GIEA + + +E+ V YG+ V
Sbjct: 1330 LLETDGTCMMKVLSERDV-DPVRTFSNDICEIFSVLGIEAVRKSVEKEMNAVLQFYGLYV 1388
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1389 NYRHLALLCDVMT 1401
>gi|354544265|emb|CCE40988.1| hypothetical protein CPAR2_110260 [Candida parapsilosis]
Length = 1446
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 12/76 (15%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
K ++ T+GI V + H+L++N++ GIEAA IIRE++ + +G+
Sbjct: 1289 KDVMNTEGI-VGTKTTTNHVLEVNEIL-----------GIEAARGSIIREIEYTMSNHGM 1336
Query: 66 EVDPRHLSLVADYMTH 81
VDPRH+ L+ D MT+
Sbjct: 1337 SVDPRHIQLLGDVMTY 1352
>gi|71998297|ref|NP_001022451.1| Protein RPOA-1, isoform b [Caenorhabditis elegans]
gi|58081868|emb|CAI46615.1| Protein RPOA-1, isoform b [Caenorhabditis elegans]
Length = 120
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/26 (80%), Positives = 22/26 (84%)
Query: 55 EVKNVFAVYGIEVDPRHLSLVADYMT 80
E+ NVFAVYGIEV RHLSL ADYMT
Sbjct: 2 EMNNVFAVYGIEVSKRHLSLTADYMT 27
>gi|324120558|dbj|BAJ78670.1| RNA polymerase II largest subunit [Gynaikothrips ficorum]
Length = 1687
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + + NDI + GIEA + + +E+ V YG+ V
Sbjct: 1329 LLETDGTSLMKVLSERDV-DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1387
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1388 NYRHLALLCDVMT 1400
>gi|310831358|ref|YP_003970001.1| putative DNA-directed RNA polymerase subunit Rpb1 [Cafeteria
roenbergensis virus BV-PW1]
gi|309386542|gb|ADO67402.1| putative DNA-directed RNA polymerase subunit Rpb1 [Cafeteria
roenbergensis virus BV-PW1]
Length = 1493
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
TD IN+ I + + D ++Y+NDI + +T+GIEA ++I E++ F G + + +
Sbjct: 1311 TDRINLEEIRLIKGI-DQERIYINDIALVYNTFGIEATRNILITELRRTFLGGGADFNYQ 1369
Query: 71 HLSLVADYMTHS 82
HL ++AD M ++
Sbjct: 1370 HLVVLADLMCYT 1381
>gi|367018612|ref|XP_003658591.1| hypothetical protein MYCTH_2294525 [Myceliophthora thermophila ATCC
42464]
gi|347005858|gb|AEO53346.1| hypothetical protein MYCTH_2294525 [Myceliophthora thermophila ATCC
42464]
Length = 1754
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
+D + Y ND++ + +GIEAA +++E+ V A G V+ RHL+L+ D MT+
Sbjct: 1348 VDTRRTYTNDLYQIVDVFGIEAARAALMQELTQVLAFGGSYVNHRHLALLVDVMTY 1403
>gi|12642610|gb|AAK00309.1|AF315819_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Botryocladia
uvarioides]
Length = 1712
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 2 ETNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
+T+ + +L TDG+N+ + + +D + NDI + T GIEA +++E++ V +
Sbjct: 1260 KTDEEWVLDTDGVNLKAVMCH-EAVDHTRTMSNDIVEIFETLGIEAVREALLQEIRGVIS 1318
Query: 62 VYGIEVDPRHLSLVADYMTH 81
G V+ RHLS++ D MT+
Sbjct: 1319 FDGAYVNYRHLSILVDVMTY 1338
>gi|399949784|gb|AFP65441.1| RNA polymerase III largest subunit [Chroomonas mesostigmatica
CCMP1168]
Length = 1328
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 35/55 (63%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMT 80
+D + +Y I + T+GIEAA II E+K +F +Y I ++ R+L L+AD MT
Sbjct: 1203 VDKSTIYCTHILTIFETFGIEAARESIILEIKTIFDLYKISINKRYLVLLADVMT 1257
>gi|380495547|emb|CCF32312.1| DNA-directed RNA polymerase II subunit RPB1 [Colletotrichum
higginsianum]
Length = 1192
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 15/84 (17%)
Query: 1 METNG---KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVK 57
++T+G + +L DG+ D N+ Y N + + +GIEAA ++RE+
Sbjct: 768 LDTSGTALRQVLAVDGV------------DSNRTYTNHLWQIVEVFGIEAARAALVRELT 815
Query: 58 NVFAVYGIEVDPRHLSLVADYMTH 81
V A G V+ RHL+L+ D MT+
Sbjct: 816 QVLAFDGSYVNHRHLALLCDVMTY 839
>gi|324120570|dbj|BAJ78676.1| RNA polymerase II largest subunit [Neocolochelyna itoi]
Length = 1815
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + + NDI + GIEA + + +E+ V YG+ V
Sbjct: 1329 LLETDGTSLMKVLSERDV-DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1387
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1388 NYRHLALLCDVMT 1400
>gi|347481890|gb|AEO97876.1| RNA polymerase II largest subunit [Emiliania huxleyi virus 84]
Length = 418
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMT 80
+D K+ NDIH + +T GIEAA +I E+ + G +DPRH+ L A MT
Sbjct: 241 VDWTKVMTNDIHNVVNTLGIEAALTMIFNELHSTLTADGSYIDPRHIELTASTMT 295
>gi|324120588|dbj|BAJ78685.1| RNA polymerase II largest subunit [Stenopsyche marmorata]
Length = 1754
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + + NDI + GIEA + + +E+ V YG+ V
Sbjct: 1329 LLETDGTSMMKVLSERDV-DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNTVLQFYGLYV 1387
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1388 NYRHLALLCDVMT 1400
>gi|288931145|ref|YP_003435205.1| DNA-directed RNA polymerase, subunit A'' [Ferroglobus placidus DSM
10642]
gi|288893393|gb|ADC64930.1| DNA-directed RNA polymerase, subunit A'' [Ferroglobus placidus DSM
10642]
Length = 376
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
+++L T+G N+ + + + + D + N+I+ + GIEAA +I E G+
Sbjct: 228 EYVLYTEGSNLKKVMKVKGV-DFTRTITNNIYEIYEVLGIEAARNAVINEALATLEEQGL 286
Query: 66 EVDPRHLSLVADYMT 80
EVD RH+ LVAD MT
Sbjct: 287 EVDVRHIMLVADAMT 301
>gi|209880239|ref|XP_002141559.1| DNA-directed RNA polymerase II subunit RPB1 [Cryptosporidium muris
RN66]
gi|209557165|gb|EEA07210.1| DNA-directed RNA polymerase II subunit RPB1, putative
[Cryptosporidium muris RN66]
Length = 1927
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
+ + +L TDG N+ + + +D + NDI + S GIEA R +++E++ V +
Sbjct: 1375 DNQWVLDTDGCNLEAVLCH-EAIDSTRTISNDITEVFSVLGIEAVRRALLKELRTVISFD 1433
Query: 64 GIEVDPRHLSLVADYMTH 81
G V+ RHL+L+ D MT
Sbjct: 1434 GSYVNYRHLALLCDNMTQ 1451
>gi|390600773|gb|EIN10167.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Punctularia strigosozonata HHB-11173 SS5]
Length = 1405
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 34 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH-------SEFDL 86
N I +A GIEA+ R II E++ +G+ +DPRH++L+ D MT+ + F +
Sbjct: 1272 NHIIEVAQVLGIEASRRTIINEIQYTMVSHGMSIDPRHITLLGDVMTYKGEVLGITRFGV 1331
Query: 87 IIMVSKSWMLDEVKSTT 103
M ML + TT
Sbjct: 1332 AKMKDSVLMLASFEKTT 1348
>gi|363755924|ref|XP_003648178.1| hypothetical protein Ecym_8065 [Eremothecium cymbalariae DBVPG#7215]
gi|356891378|gb|AET41361.1| Hypothetical protein Ecym_8065 [Eremothecium cymbalariae DBVPG#7215]
Length = 1743
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDG+N++ + + D ++Y N + + GIEA + REV NV A G V
Sbjct: 1306 VLETDGVNLSEVMTVPGV-DPTRIYTNSFIDIMNVLGIEAGRAALYREVYNVIASDGSYV 1364
Query: 68 DPRHLSLVADYMTHSEF 84
+ RH++L+ D MT F
Sbjct: 1365 NYRHMALLVDVMTSQGF 1381
>gi|389583419|dbj|GAB66154.1| DNA-directed RNA polymerase II largest subunit [Plasmodium cynomolgi
strain B]
Length = 2270
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L TDG N+ +I H+ D K NDI + GIEA R +++E++ V + V
Sbjct: 1827 VLDTDGCNLEHIFCASHV-DYKKTISNDIVEIFEVLGIEAVRRALLKELRTVISFDSSYV 1885
Query: 68 DPRHLSLVADYMTHSEF 84
+ RHLS++ D MT +
Sbjct: 1886 NYRHLSILCDVMTQRGY 1902
>gi|283481284|emb|CAZ69400.1| putative DNA-dependent RNA polymerase II largest subunit [Emiliania
huxleyi virus 99B1]
Length = 1468
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMT 80
+D K+ NDIH + +T GIEAA +I E+ + G +DPRH+ L A MT
Sbjct: 1291 VDWTKVMTNDIHNVVNTLGIEAALTMIFNELHSTLTADGSYIDPRHIELTASTMT 1345
>gi|73852534|ref|YP_293818.1| putative DNA-dependent RNA polymerase II largest subunit [Emiliania
huxleyi virus 86]
gi|72415250|emb|CAI65487.1| putative DNA-dependent RNA polymerase II largest subunit [Emiliania
huxleyi virus 86]
gi|347600516|gb|AEP15003.1| RNA polymerase beta' subunit [Emiliania huxleyi virus 88]
Length = 1468
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMT 80
+D K+ NDIH + +T GIEAA +I E+ + G +DPRH+ L A MT
Sbjct: 1291 VDWTKVMTNDIHNVVNTLGIEAALTMIFNELHSTLTADGSYIDPRHIELTASTMT 1345
>gi|386875147|ref|ZP_10117336.1| DNA-directed RNA polymerase subunit A' [Candidatus Nitrosopumilus
salaria BD31]
gi|386807026|gb|EIJ66456.1| DNA-directed RNA polymerase subunit A' [Candidatus Nitrosopumilus
salaria BD31]
Length = 1263
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 7/138 (5%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+++T G N+ + + + + D + N++ +A T GIEAA +I E+ N G+EV
Sbjct: 1117 VIQTTGSNIAKVLEVKGI-DKRNVRTNNVFEIAGTLGIEAARNSLIDELNNTLGDQGLEV 1175
Query: 68 DPRHLSLVADYMTHSEFDLIIMVSKSWMLDEVKSTTARSVTPACEPNSHHDVKKIEFKKQ 127
D R++ LV+D M + + + + + S AR+ P H E +
Sbjct: 1176 DNRYIMLVSDLMCSRGY--MQQIGRHGIAGTKDSVLARAAFEITVPTIAHAALGGEIEH- 1232
Query: 128 NKILPLVLQNSLTGSSYP 145
L + +N + GS+ P
Sbjct: 1233 ---LKGITENVIVGSNIP 1247
>gi|432330444|ref|YP_007248587.1| DNA-directed RNA polymerase, subunit A'' [Methanoregula formicicum
SMSP]
gi|432137153|gb|AGB02080.1| DNA-directed RNA polymerase, subunit A'' [Methanoregula formicicum
SMSP]
Length = 391
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
G+++L T+G N+ + + D + N+I +AS GIEAA +I E + G
Sbjct: 242 GEYILYTEGSNLKDVFDVTGV-DTTRTRTNNISEIASVLGIEAARNAVIHEAVSTLNEQG 300
Query: 65 IEVDPRHLSLVADYM 79
I VD RHL LV+D M
Sbjct: 301 IAVDVRHLMLVSDMM 315
>gi|288561070|ref|YP_003424556.1| DNA-directed RNA polymerase subunit A'' RpoA2 [Methanobrevibacter
ruminantium M1]
gi|288543780|gb|ADC47664.1| DNA-directed RNA polymerase subunit A'' RpoA2 [Methanobrevibacter
ruminantium M1]
Length = 545
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+G N+ I + + D + NDIH + GIEAA I+ E+ + G+ V
Sbjct: 326 VLHTEGSNLGAIFKIEGI-DKVRSTTNDIHEIEVVLGIEAARNAIVYELNRTLSDQGLTV 384
Query: 68 DPRHLSLVADYMT 80
D RH+ LVAD MT
Sbjct: 385 DIRHIMLVADMMT 397
>gi|324120582|dbj|BAJ78682.1| RNA polymerase II largest subunit [Eretes sticticus]
Length = 1677
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + + NDI + + GIEA + + +E+ V YG+ V
Sbjct: 1328 LLETDGTSMMKVLSERDV-DPVRTFSNDICEIFAVLGIEAVRKSVEKEMNAVLQFYGLYV 1386
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1387 NYRHLALLCDVMT 1399
>gi|4096110|gb|AAC99803.1| RNA polymerase II largest subunit [Kluyveromyces lactis]
Length = 414
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 68
L+TDG+N++ + + D +++Y N + + GIEA + REV NV A G V+
Sbjct: 1 LETDGVNLSEVMTVSGV-DGSRIYTNSFIDIMNVLGIEAGRAALYREVYNVIASDGSYVN 59
Query: 69 PRHLSLVADYMTHSEF 84
RH++L+ D MT F
Sbjct: 60 YRHMALLVDVMTSQGF 75
>gi|219852751|ref|YP_002467183.1| DNA-directed RNA polymerase subunit A'' [Methanosphaerula palustris
E1-9c]
gi|219547010|gb|ACL17460.1| DNA-directed RNA polymerase, subunit A'' [Methanosphaerula
palustris E1-9c]
Length = 395
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
+G+++L T+G N+ + + + D ++ N+I ++ GIEAA II E +
Sbjct: 240 SGEYILYTEGSNLKDVFEVAGV-DTSRTRTNNISEISQVLGIEAARNAIIAEALSTLGEQ 298
Query: 64 GIEVDPRHLSLVADYM 79
GI VD RH+ LV+D M
Sbjct: 299 GIRVDVRHIMLVSDMM 314
>gi|78183107|gb|ABB29549.1| putative RNA polymerase II 215 kD subunit [Drosophila simulans]
Length = 746
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
G+ LL+TDG ++ + R + D + NDI + GIEA + + +E+ V YG
Sbjct: 466 GEWLLETDGTSMMKVLSERDV-DPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYG 524
Query: 65 IEVDPRHLSLVADYMT 80
+ V+ RHL+L+ D MT
Sbjct: 525 LYVNYRHLALLCDVMT 540
>gi|324120590|dbj|BAJ78686.1| RNA polymerase II largest subunit [Panorpa takenouchii]
Length = 1725
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + + NDI + + GIEA + + +E+ V YG+ V
Sbjct: 1326 LLETDGTSMMKVLSERDV-DPIRTFSNDICEIFAVLGIEAVRKSVEKEMNTVLNFYGLYV 1384
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1385 NYRHLALLCDVMT 1397
>gi|294495211|ref|YP_003541704.1| DNA-directed RNA polymerase, subunit A' [Methanohalophilus mahii
DSM 5219]
gi|292666210|gb|ADE36059.1| DNA-directed RNA polymerase, subunit A' [Methanohalophilus mahii
DSM 5219]
Length = 385
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
+G++ L T+G + + + + D + N+I + +GIEAA II+E +
Sbjct: 235 DGEYRLYTEGSELKKVLEIDGV-DPTRTSTNNIGEIYEVFGIEAARNAIIKEATDTLREQ 293
Query: 64 GIEVDPRHLSLVADYMT 80
G+EVD RH+ LVAD M+
Sbjct: 294 GLEVDVRHIMLVADIMS 310
>gi|78183111|gb|ABB29551.1| putative RNA polymerase II 215 kD subunit [Drosophila yakuba]
Length = 766
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
G+ LL+TDG ++ + R + D + NDI + GIEA + + +E+ V YG
Sbjct: 466 GEWLLETDGTSMMKVLSERDV-DPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYG 524
Query: 65 IEVDPRHLSLVADYMT 80
+ V+ RHL+L+ D MT
Sbjct: 525 LYVNYRHLALLCDVMT 540
>gi|310789907|gb|EFQ25440.1| RNA polymerase Rpb1 [Glomerella graminicola M1.001]
Length = 1753
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 15/84 (17%)
Query: 1 METNG---KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVK 57
++T+G + +L DG+ D N+ Y N + + +GIEAA ++RE+
Sbjct: 1330 LDTSGTALRQVLAVDGV------------DSNRTYTNHLWQVVEVFGIEAARAALVRELT 1377
Query: 58 NVFAVYGIEVDPRHLSLVADYMTH 81
V A G V+ RHL+L+ D MT+
Sbjct: 1378 QVLAFDGSYVNHRHLALLCDVMTY 1401
>gi|78183103|gb|ABB29547.1| putative RNA polymerase II 215 kD subunit [Drosophila erecta]
Length = 760
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
G+ LL+TDG ++ + R + D + NDI + GIEA + + +E+ V YG
Sbjct: 466 GEWLLETDGTSMMKVLSERDV-DPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYG 524
Query: 65 IEVDPRHLSLVADYMT 80
+ V+ RHL+L+ D MT
Sbjct: 525 LYVNYRHLALLCDVMT 540
>gi|356605956|gb|AET25009.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 7
KK-2011]
Length = 621
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDG + + R + D + Y NDI + GIEA + I RE+ NV + G V
Sbjct: 525 ILETDGTALLRVLSERQI-DPVRTYSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYV 583
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 584 NYRHLALLCDVMT 596
>gi|78183105|gb|ABB29548.1| putative RNA polymerase II 215 kD subunit [Drosophila orena]
Length = 750
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
G+ LL+TDG ++ + R + D + NDI + GIEA + + +E+ V YG
Sbjct: 466 GEWLLETDGTSMMKVLSERDV-DPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYG 524
Query: 65 IEVDPRHLSLVADYMT 80
+ V+ RHL+L+ D MT
Sbjct: 525 LYVNYRHLALLCDVMT 540
>gi|78183109|gb|ABB29550.1| putative RNA polymerase II 215 kD subunit [Drosophila teissieri]
Length = 769
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
G+ LL+TDG ++ + R + D + NDI + GIEA + + +E+ V YG
Sbjct: 466 GEWLLETDGTSMMKVLSERDV-DPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYG 524
Query: 65 IEVDPRHLSLVADYMT 80
+ V+ RHL+L+ D MT
Sbjct: 525 LYVNYRHLALLCDVMT 540
>gi|167537656|ref|XP_001750496.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771036|gb|EDQ84710.1| predicted protein [Monosiga brevicollis MX1]
Length = 1414
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 33 VNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH-------SEFD 85
N + + T GIEAA +I+ +V+ V + YGI ++PRH L++D MT + F
Sbjct: 1269 CNHVMELEQTLGIEAARSIIMDQVQYVMSNYGIHINPRHTMLMSDLMTFKGEVLGITRFG 1328
Query: 86 LIIMVSKSWMLDEVKSTT 103
+ M +ML + TT
Sbjct: 1329 IAKMKESVFMLASFEKTT 1346
>gi|307181433|gb|EFN69028.1| DNA-directed RNA polymerase II subunit RPB1 [Camponotus floridanus]
Length = 1906
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + + NDI + GIEA + + +E+ V YG+ V
Sbjct: 1329 LLETDGTSLMKVLSERDV-DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYV 1387
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1388 NYRHLALLCDVMT 1400
>gi|164657764|ref|XP_001730008.1| hypothetical protein MGL_2994 [Malassezia globosa CBS 7966]
gi|159103902|gb|EDP42794.1| hypothetical protein MGL_2994 [Malassezia globosa CBS 7966]
Length = 1376
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 32 YVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH-------SEF 84
+ N + M GIEAA I RE+ A +G+ +DPRH+ L+AD MT+ + F
Sbjct: 1243 HTNHVMEMQQVLGIEAARSSIYREIDYTMASHGMSIDPRHVMLLADVMTYKGEVLGITRF 1302
Query: 85 DLIIMVSKSWMLDEVKSTT 103
+ M ML + TT
Sbjct: 1303 GVAKMKDSVLMLASFEKTT 1321
>gi|325960114|ref|YP_004291580.1| DNA-directed RNA polymerase subunit A'' [Methanobacterium sp.
AL-21]
gi|325331546|gb|ADZ10608.1| DNA-directed RNA polymerase subunit A'' [Methanobacterium sp.
AL-21]
Length = 384
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 39/81 (48%), Gaps = 15/81 (18%)
Query: 3 TNGKHL---LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNV 59
T G +L LK +G+N S NDIH + G+EAA II E ++
Sbjct: 243 TEGSNLGAVLKMEGVNKTRTS------------TNDIHEVEKVLGVEAARNAIIHEAQST 290
Query: 60 FAVYGIEVDPRHLSLVADYMT 80
G+ VD RH+ LVAD MT
Sbjct: 291 MEEQGLTVDVRHIMLVADMMT 311
>gi|448520288|ref|XP_003868270.1| Rpo31 protein [Candida orthopsilosis Co 90-125]
gi|380352609|emb|CCG22836.1| Rpo31 protein [Candida orthopsilosis]
Length = 1443
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 12/76 (15%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
K ++ T+GI V + H+L++N++ GIEAA IIRE+ + +G+
Sbjct: 1286 KDVMNTEGI-VGTKTTTNHVLEVNEIL-----------GIEAARGSIIREIDYTMSNHGM 1333
Query: 66 EVDPRHLSLVADYMTH 81
VDPRH+ L+ D MT+
Sbjct: 1334 SVDPRHIQLLGDVMTY 1349
>gi|345487216|ref|XP_003425653.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1 [Nasonia vitripennis]
Length = 1907
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + + NDI + GIEA + + +E+ V YG+ V
Sbjct: 1329 LLETDGTSLMKVLSERDV-DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYV 1387
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1388 NYRHLALLCDVMT 1400
>gi|120561201|gb|ABM26986.1| RNA polymerase II largest subunit, partial [Pichia kudriavzevii]
Length = 1647
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDGIN+ + + D + Y N + +GIEAA + +E+ NV A G V
Sbjct: 1230 VLETDGINLADVITVEGI-DTTRTYSNSFVEILFVFGIEAARSALYKEILNVIAFDGSYV 1288
Query: 68 DPRHLSLVADYMTH 81
+ RHL+L+ D MT+
Sbjct: 1289 NYRHLALLVDLMTY 1302
>gi|313241408|emb|CBY33677.1| unnamed protein product [Oikopleura dioica]
Length = 1360
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHS 82
+D ++ N I + G+EAA II E+ N +GI VD RHL ++ADYMT++
Sbjct: 1209 IDWSRTSSNHIPKVFEILGVEAARSTIINEMTNTMGHHGIHVDRRHLMMLADYMTYT 1265
>gi|324120572|dbj|BAJ78677.1| RNA polymerase II largest subunit [Vespa analis insularis]
Length = 1708
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + + NDI + GIEA + + +E+ V YG+ V
Sbjct: 1328 LLETDGTSLMKVLSERDV-DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYV 1386
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1387 NYRHLALLCDVMT 1399
>gi|307198840|gb|EFN79616.1| DNA-directed RNA polymerase II subunit RPB1 [Harpegnathos saltator]
Length = 1906
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + + NDI + GIEA + + +E+ V YG+ V
Sbjct: 1329 LLETDGTSLMKVLSERDV-DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYV 1387
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1388 NYRHLALLCDVMT 1400
>gi|380029407|ref|XP_003698365.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1-like [Apis florea]
Length = 1893
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + + NDI + GIEA + + +E+ V YG+ V
Sbjct: 1328 LLETDGTSLMKVLSERDV-DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYV 1386
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1387 NYRHLALLCDVMT 1399
>gi|332023552|gb|EGI63788.1| DNA-directed RNA polymerase II subunit RPB1 [Acromyrmex echinatior]
Length = 1906
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + + NDI + GIEA + + +E+ V YG+ V
Sbjct: 1329 LLETDGTSLMKVLSERDV-DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYV 1387
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1388 NYRHLALLCDVMT 1400
>gi|221055475|ref|XP_002258876.1| dna-directed rna polymerase ii [Plasmodium knowlesi strain H]
gi|193808946|emb|CAQ39649.1| dna-directed rna polymerase ii, putative [Plasmodium knowlesi strain
H]
Length = 2353
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L TDG N+ +I H+ D K NDI + GIEA R +++E++ V + V
Sbjct: 1789 VLDTDGCNLEHIFCAPHV-DYKKTISNDIVEIFEVLGIEAVRRALLKELRTVISFDSSYV 1847
Query: 68 DPRHLSLVADYMTHSEF 84
+ RHLS++ D MT +
Sbjct: 1848 NYRHLSILCDVMTQRGY 1864
>gi|328793442|ref|XP_623281.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Apis mellifera]
Length = 1883
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + + NDI + GIEA + + +E+ V YG+ V
Sbjct: 1328 LLETDGTSLMKVLSERDV-DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYV 1386
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1387 NYRHLALLCDVMT 1399
>gi|322801476|gb|EFZ22137.1| hypothetical protein SINV_09846 [Solenopsis invicta]
Length = 1905
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + + NDI + GIEA + + +E+ V YG+ V
Sbjct: 1328 LLETDGTSLMKVLSERDV-DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYV 1386
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1387 NYRHLALLCDVMT 1399
>gi|383857287|ref|XP_003704136.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Megachile rotundata]
Length = 1904
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + + NDI + GIEA + + +E+ V YG+ V
Sbjct: 1328 LLETDGTSLMKVLSERDV-DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYV 1386
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1387 NYRHLALLCDVMT 1399
>gi|126178252|ref|YP_001046217.1| DNA-directed RNA polymerase, subunit A'' [Methanoculleus marisnigri
JR1]
gi|126178265|ref|YP_001046230.1| DNA-directed RNA polymerase, subunit A'' [Methanoculleus marisnigri
JR1]
gi|125861046|gb|ABN56235.1| SSU ribosomal protein S2P [Methanoculleus marisnigri JR1]
gi|125861059|gb|ABN56248.1| DNA-directed RNA polymerase, subunit A' [Methanoculleus marisnigri
JR1]
Length = 390
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
G+++L T+G N+ + + + D ++ N+I +A GIEA II+E +
Sbjct: 239 GGEYILYTEGSNLKDVFEVEGV-DTSRTRSNNISEIADVLGIEAGRNAIIQEALSTLNEQ 297
Query: 64 GIEVDPRHLSLVADYM 79
GI VD RH+ LVAD M
Sbjct: 298 GIGVDVRHIMLVADMM 313
>gi|4808162|emb|CAB42796.1| largest subunit of the RNA polymerase II complex [Drosophila
madeirensis]
Length = 1889
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
G+ LL+TDG ++ + R + D + NDI + GIEA + + +E+ V YG
Sbjct: 1324 GEWLLETDGTSMMKVLSERDV-DPVRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYG 1382
Query: 65 IEVDPRHLSLVADYMT 80
+ V+ RHL+L+ D MT
Sbjct: 1383 LYVNYRHLALLCDVMT 1398
>gi|320170274|gb|EFW47173.1| polymerase III polypeptide A [Capsaspora owczarzaki ATCC 30864]
Length = 1472
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 8/109 (7%)
Query: 2 ETNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
+T GK+ L +G N+ + + D + N I M + GIEAA I+ E++
Sbjct: 1296 KTPGKYNLLVEGTNLLAVMGIEGV-DWMRTKSNHIMEMKDSLGIEAARSTIMNEIQYTMQ 1354
Query: 62 VYGIEVDPRHLSLVADYMTH-------SEFDLIIMVSKSWMLDEVKSTT 103
+G+ +D RHL L+AD MT + F + M ML + TT
Sbjct: 1355 SHGMSIDTRHLMLLADLMTSKGDVLGITRFGIAKMKESVLMLASFEKTT 1403
>gi|162606578|ref|XP_001713319.1| DNA-directed RNA polymerase II largest chain [Guillardia theta]
gi|12580785|emb|CAC27103.1| DNA-directed RNA polymerase II largest chain [Guillardia theta]
Length = 1473
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 1 METNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 60
++ N + +L+T+G+++ ++ Y + D ++ ND+ GIEA +++I+E++N+
Sbjct: 1324 LKNNFEFVLETEGVDLRFVMNYNGI-DYSRCTTNDLLESLKVLGIEATRKILIQELRNLI 1382
Query: 61 AVYGIEVDPRHLSLVADYMT 80
+ G V+ RHL + D +T
Sbjct: 1383 SFDGSYVNYRHLCTLVDLIT 1402
>gi|9587179|gb|AAF89193.1|AF272643_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587181|gb|AAF89194.1|AF272644_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587183|gb|AAF89195.1|AF272645_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587185|gb|AAF89196.1|AF272646_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587187|gb|AAF89197.1|AF272647_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587189|gb|AAF89198.1|AF272648_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587191|gb|AAF89199.1|AF272649_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587193|gb|AAF89200.1|AF272650_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587195|gb|AAF89201.1|AF272651_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587197|gb|AAF89202.1|AF272652_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587199|gb|AAF89203.1|AF272653_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|4808177|emb|CAB42800.1| largest subunit of the RNA polymerase II complex [Drosophila
subobscura]
Length = 1889
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
G+ LL+TDG ++ + R + D + NDI + GIEA + + +E+ V YG
Sbjct: 1324 GEWLLETDGTSMMKVLSERDV-DPVRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYG 1382
Query: 65 IEVDPRHLSLVADYMT 80
+ V+ RHL+L+ D MT
Sbjct: 1383 LYVNYRHLALLCDVMT 1398
>gi|452844664|gb|EME46598.1| hypothetical protein DOTSEDRAFT_70566 [Dothistroma septosporum NZE10]
Length = 1491
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 30 KLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH-SEFDLII 88
K N++ M GIEAA + II E+ +V G+++DPRH+ L+AD MT+ E I
Sbjct: 1320 KTKSNNVMEMRDVLGIEAARKTIIDEISSVMG--GMDIDPRHMQLLADVMTYKGEVLGIT 1377
Query: 89 MVSKSWMLDEVKSTTARSVTP 109
+ M D V + TP
Sbjct: 1378 RFGLAKMRDSVLQLASFEKTP 1398
>gi|340722779|ref|XP_003399779.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Bombus
terrestris]
gi|350424170|ref|XP_003493710.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Bombus
impatiens]
Length = 1902
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + + NDI + GIEA + + +E+ V YG+ V
Sbjct: 1328 LLETDGTSLMKVLSERDV-DPVRTFSNDICEIFEVLGIEAVRKSVEKEMNAVLQFYGLYV 1386
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1387 NYRHLALLCDVMT 1399
>gi|195446609|ref|XP_002070845.1| GK25468 [Drosophila willistoni]
gi|194166930|gb|EDW81831.1| GK25468 [Drosophila willistoni]
Length = 1890
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
G+ LL+TDG ++ + R + D + NDI + GIEA + + +E+ V YG
Sbjct: 1324 GEWLLETDGTSMMKVLSERDV-DPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYG 1382
Query: 65 IEVDPRHLSLVADYMT 80
+ V+ RHL+L+ D MT
Sbjct: 1383 LYVNYRHLALLCDVMT 1398
>gi|195355215|ref|XP_002044088.1| GM13065 [Drosophila sechellia]
gi|194129357|gb|EDW51400.1| GM13065 [Drosophila sechellia]
Length = 1887
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
G+ LL+TDG ++ + R + D + NDI + GIEA + + +E+ V YG
Sbjct: 1324 GEWLLETDGTSMMKVLSERDV-DPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYG 1382
Query: 65 IEVDPRHLSLVADYMT 80
+ V+ RHL+L+ D MT
Sbjct: 1383 LYVNYRHLALLCDVMT 1398
>gi|19528357|gb|AAL90293.1| LD43558p [Drosophila melanogaster]
Length = 1429
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
G+ LL+TDG ++ + R + D + NDI + GIEA + + +E+ V YG
Sbjct: 866 GEWLLETDGTSMMKVLSERDV-DPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYG 924
Query: 65 IEVDPRHLSLVADYMT 80
+ V+ RHL+L+ D MT
Sbjct: 925 LYVNYRHLALLCDVMT 940
>gi|386001094|ref|YP_005919393.1| DNA-directed RNA polymerase subunit A'' [Methanosaeta harundinacea
6Ac]
gi|312183605|gb|ADQ42372.1| DNA-directed RNA polymerase subunit A'' [Methanosaeta harundinacea
6Ac]
gi|357209150|gb|AET63770.1| DNA-directed RNA polymerase subunit A'' [Methanosaeta harundinacea
6Ac]
Length = 378
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
+++L T+G + + Q++ + D + N+I + GIEAA II E + G+
Sbjct: 234 EYVLYTEGSALKDVIQFKGV-DPTRTKTNNITEIGDVLGIEAARNAIINEATDTLREQGL 292
Query: 66 EVDPRHLSLVADYMT 80
VD RH+ LVAD MT
Sbjct: 293 SVDVRHIMLVADIMT 307
>gi|117414356|gb|ABK34556.1| putative DNA-directed RNA polymerase domain 5 [White sturgeon
epivirus]
Length = 81
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 7 HLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIE 66
+++ TDGI+++ + +H+ D N + VNDI + +T GIEAA +I++E+ ++
Sbjct: 1 YIVATDGIDLDRVKNNKHV-DFNTVVVNDIQTVYNTLGIEAARNLIVKEIDQLYNGSDNP 59
Query: 67 VDPRHLSLVADYMTH 81
++ H+ L+AD +T+
Sbjct: 60 INLTHIYLLADIITN 74
>gi|17530899|ref|NP_511124.1| RNA polymerase II 215kD subunit [Drosophila melanogaster]
gi|14286163|sp|P04052.4|RPB1_DROME RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA
polymerase II subunit B1; AltName: Full=DNA-directed RNA
polymerase III largest subunit
gi|7292659|gb|AAF48057.1| RNA polymerase II 215kD subunit [Drosophila melanogaster]
gi|269954742|gb|ACZ54678.1| FI12846p [Drosophila melanogaster]
Length = 1887
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
G+ LL+TDG ++ + R + D + NDI + GIEA + + +E+ V YG
Sbjct: 1324 GEWLLETDGTSMMKVLSERDV-DPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYG 1382
Query: 65 IEVDPRHLSLVADYMT 80
+ V+ RHL+L+ D MT
Sbjct: 1383 LYVNYRHLALLCDVMT 1398
>gi|162951789|gb|ABY21756.1| RE30267p [Drosophila melanogaster]
Length = 1887
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
G+ LL+TDG ++ + R + D + NDI + GIEA + + +E+ V YG
Sbjct: 1324 GEWLLETDGTSMMKVLSERDV-DPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYG 1382
Query: 65 IEVDPRHLSLVADYMT 80
+ V+ RHL+L+ D MT
Sbjct: 1383 LYVNYRHLALLCDVMT 1398
>gi|195479340|ref|XP_002100852.1| RNA polymerase II 215kD subunit [Drosophila yakuba]
gi|194188376|gb|EDX01960.1| RNA polymerase II 215kD subunit [Drosophila yakuba]
Length = 1889
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
G+ LL+TDG ++ + R + D + NDI + GIEA + + +E+ V YG
Sbjct: 1324 GEWLLETDGTSMMKVLSERDV-DPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYG 1382
Query: 65 IEVDPRHLSLVADYMT 80
+ V+ RHL+L+ D MT
Sbjct: 1383 LYVNYRHLALLCDVMT 1398
>gi|125983594|ref|XP_001355562.1| RpII215 [Drosophila pseudoobscura pseudoobscura]
gi|54643878|gb|EAL32621.1| RpII215 [Drosophila pseudoobscura pseudoobscura]
Length = 1889
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
G+ LL+TDG ++ + R + D + NDI + GIEA + + +E+ V YG
Sbjct: 1324 GEWLLETDGTSMMKVLSERDV-DPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYG 1382
Query: 65 IEVDPRHLSLVADYMT 80
+ V+ RHL+L+ D MT
Sbjct: 1383 LYVNYRHLALLCDVMT 1398
>gi|379994184|gb|AFD22719.1| RNA polymerase III largest subunit [Collodictyon triciliatum]
Length = 186
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 29/43 (67%)
Query: 39 MASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
M GIEAA I++E+ +V + YGI VD RH+ L+AD MT+
Sbjct: 3 MQQVLGIEAARSTIMKEIGDVLSNYGIAVDQRHMMLLADVMTY 45
>gi|4808164|emb|CAB42795.1| largest subunit of the RNA polymerase II complex [Drosophila guanche]
gi|40217263|emb|CAD68001.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217265|emb|CAD70679.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217267|emb|CAD70680.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217269|emb|CAD70681.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217271|emb|CAD70682.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217273|emb|CAD70683.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217275|emb|CAD70684.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217277|emb|CAD70685.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217279|emb|CAD70686.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217281|emb|CAD70687.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217283|emb|CAD70688.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217285|emb|CAD70689.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217287|emb|CAD70690.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217289|emb|CAD70691.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217291|emb|CAD70692.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217293|emb|CAD70693.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217295|emb|CAD70694.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217297|emb|CAD70695.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217299|emb|CAD70696.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217301|emb|CAD70697.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217303|emb|CAD70698.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217305|emb|CAD70699.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217307|emb|CAD70700.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217309|emb|CAD70701.1| RNA polymerase II large subunit [Drosophila guanche]
Length = 1889
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
G+ LL+TDG ++ + R + D + NDI + GIEA + + +E+ V YG
Sbjct: 1324 GEWLLETDGTSMMKVLSERDV-DPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYG 1382
Query: 65 IEVDPRHLSLVADYMT 80
+ V+ RHL+L+ D MT
Sbjct: 1383 LYVNYRHLALLCDVMT 1398
>gi|452982836|gb|EME82594.1| hypothetical protein MYCFIDRAFT_187946 [Pseudocercospora fijiensis
CIRAD86]
Length = 1442
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 34 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH-SEFDLIIMVSK 92
N++ M GIEAA + II E+ +V G+++DPRH+ L+AD MT+ E I
Sbjct: 1321 NNVMEMRDVLGIEAARKTIIDEISSVMG--GMDIDPRHMQLLADVMTYKGEVLGITRFGL 1378
Query: 93 SWMLDEVKSTTARSVTP 109
+ M D V + TP
Sbjct: 1379 AKMRDSVLQLASFEKTP 1395
>gi|308229958|gb|ADO24386.1| RNA polymerase II large subunit, partial [Drosophila quinaria]
Length = 1847
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
G+ LL+TDG ++ + R + D + NDI + GIEA + + +E+ V YG
Sbjct: 1305 GEWLLETDGTSMMKVLSERDV-DPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYG 1363
Query: 65 IEVDPRHLSLVADYMT 80
+ V+ RHL+L+ D MT
Sbjct: 1364 LYVNYRHLALLCDVMT 1379
>gi|194889556|ref|XP_001977109.1| RNA polymerase II 215kD subunit [Drosophila erecta]
gi|190648758|gb|EDV46036.1| RNA polymerase II 215kD subunit [Drosophila erecta]
Length = 1889
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
G+ LL+TDG ++ + R + D + NDI + GIEA + + +E+ V YG
Sbjct: 1324 GEWLLETDGTSMMKVLSERDV-DPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYG 1382
Query: 65 IEVDPRHLSLVADYMT 80
+ V+ RHL+L+ D MT
Sbjct: 1383 LYVNYRHLALLCDVMT 1398
>gi|194762514|ref|XP_001963379.1| GF20366 [Drosophila ananassae]
gi|190629038|gb|EDV44455.1| GF20366 [Drosophila ananassae]
Length = 1889
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
G+ LL+TDG ++ + R + D + NDI + GIEA + + +E+ V YG
Sbjct: 1324 GEWLLETDGTSMMKVLSERDV-DPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYG 1382
Query: 65 IEVDPRHLSLVADYMT 80
+ V+ RHL+L+ D MT
Sbjct: 1383 LYVNYRHLALLCDVMT 1398
>gi|195399163|ref|XP_002058190.1| GJ15949 [Drosophila virilis]
gi|194150614|gb|EDW66298.1| GJ15949 [Drosophila virilis]
Length = 1889
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
G+ LL+TDG ++ + R + D + NDI + GIEA + + +E+ V YG
Sbjct: 1324 GEWLLETDGTSMMKVLSERDV-DPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYG 1382
Query: 65 IEVDPRHLSLVADYMT 80
+ V+ RHL+L+ D MT
Sbjct: 1383 LYVNYRHLALLCDVMT 1398
>gi|308229954|gb|ADO24384.1| RNA polymerase II large subunit, partial [Drosophila nigromaculata]
Length = 1872
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
G+ LL+TDG ++ + R + D + NDI + GIEA + + +E+ V YG
Sbjct: 1317 GEWLLETDGTSMMKVLSERDV-DPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYG 1375
Query: 65 IEVDPRHLSLVADYMT 80
+ V+ RHL+L+ D MT
Sbjct: 1376 LYVNYRHLALLCDVMT 1391
>gi|158332|gb|AAA28868.1| RNA polymerase II [Drosophila melanogaster]
Length = 1896
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
G+ LL+TDG ++ + R + D + NDI + GIEA + + +E+ V YG
Sbjct: 1324 GEWLLETDGTSMMKVLSERDV-DPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYG 1382
Query: 65 IEVDPRHLSLVADYMT 80
+ V+ RHL+L+ D MT
Sbjct: 1383 LYVNYRHLALLCDVMT 1398
>gi|410721845|ref|ZP_11361170.1| DNA-directed RNA polymerase, subunit A'''' [Methanobacterium sp.
Maddingley MBC34]
gi|410598194|gb|EKQ52780.1| DNA-directed RNA polymerase, subunit A'''' [Methanobacterium sp.
Maddingley MBC34]
Length = 383
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
++ T+G N+ + + + D + NDIH + G+EAA II E + G+ V
Sbjct: 240 VIHTEGSNLGAVLKMEGV-DPVRTTTNDIHEVEKVLGVEAARNSIIHEAQTTMEEQGLTV 298
Query: 68 DPRHLSLVADYMT 80
D RH+ LVAD MT
Sbjct: 299 DVRHIMLVADMMT 311
>gi|308229950|gb|ADO24382.1| RNA polymerase II large subunit, partial [Drosophila falleni]
Length = 1847
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
G+ LL+TDG ++ + R + D + NDI + GIEA + + +E+ V YG
Sbjct: 1305 GEWLLETDGTSMMKVLSERDV-DPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYG 1363
Query: 65 IEVDPRHLSLVADYMT 80
+ V+ RHL+L+ D MT
Sbjct: 1364 LYVNYRHLALLCDVMT 1379
>gi|195168657|ref|XP_002025147.1| GL26742 [Drosophila persimilis]
gi|194108592|gb|EDW30635.1| GL26742 [Drosophila persimilis]
Length = 1804
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
G+ LL+TDG ++ + R + D + NDI + GIEA + + +E+ V YG
Sbjct: 1324 GEWLLETDGTSMMKVLSERDV-DPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYG 1382
Query: 65 IEVDPRHLSLVADYMT 80
+ V+ RHL+L+ D MT
Sbjct: 1383 LYVNYRHLALLCDVMT 1398
>gi|365981561|ref|XP_003667614.1| hypothetical protein NDAI_0A02130 [Naumovozyma dairenensis CBS 421]
gi|343766380|emb|CCD22371.1| hypothetical protein NDAI_0A02130 [Naumovozyma dairenensis CBS 421]
Length = 1729
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDG+N++ + + D ++Y N + GIEA + REV NV A G V
Sbjct: 1305 VLETDGVNLSEVMTVPGV-DATRIYTNSFIDITEVLGIEAGRAALYREVYNVIASDGSYV 1363
Query: 68 DPRHLSLVADYMT 80
+ RH++L+ D MT
Sbjct: 1364 NYRHMALLVDVMT 1376
>gi|308229942|gb|ADO24378.1| RNA polymerase II large subunit, partial [Drosophila acutilabella]
Length = 1845
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
G+ LL+TDG ++ + R + D + NDI + GIEA + + +E+ V YG
Sbjct: 1305 GEWLLETDGTSMMKVLSERDV-DPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYG 1363
Query: 65 IEVDPRHLSLVADYMT 80
+ V+ RHL+L+ D MT
Sbjct: 1364 LYVNYRHLALLCDVMT 1379
>gi|12642616|gb|AAK00312.1|AF315822_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Monoblepharis
macrandra]
Length = 1603
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 1 METNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 60
+E +H+L+TDGIN+ + + D + Y N + + GIEA +++E++ V
Sbjct: 1249 IEQAQEHILETDGINLREVMAVEEV-DFTRTYSNAPLEIYAVLGIEAGRAALLKEIRKVI 1307
Query: 61 AVYGIEVDPRHLSLVADYMTH 81
G V+ RHL+L+ D M
Sbjct: 1308 EFDGSYVNYRHLALLVDVMCQ 1328
>gi|324120586|dbj|BAJ78684.1| RNA polymerase II largest subunit [Papilio polytes]
Length = 1518
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + + NDI + GIEA + + +E+ V YG+ V
Sbjct: 1321 LLETDGTSLMKVLSERDV-DPIRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYV 1379
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1380 NYRHLALLCDVMT 1392
>gi|4808166|emb|CAB42797.1| largest subunit of the RNA polymerase II complex [Drosophila
pseudoobscura]
Length = 1811
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
G+ LL+TDG ++ + R + D + NDI + GIEA + + +E+ V YG
Sbjct: 1246 GEWLLETDGTSMMKVLSERDV-DPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYG 1304
Query: 65 IEVDPRHLSLVADYMT 80
+ V+ RHL+L+ D MT
Sbjct: 1305 LYVNYRHLALLCDVMT 1320
>gi|308229956|gb|ADO24385.1| RNA polymerase II large subunit, partial [Drosophila phalerata]
Length = 1849
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
G+ LL+TDG ++ + R + D + NDI + GIEA + + +E+ V YG
Sbjct: 1305 GEWLLETDGTSMMKVLSERDV-DPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYG 1363
Query: 65 IEVDPRHLSLVADYMT 80
+ V+ RHL+L+ D MT
Sbjct: 1364 LYVNYRHLALLCDVMT 1379
>gi|195059969|ref|XP_001995730.1| GH17604 [Drosophila grimshawi]
gi|193896516|gb|EDV95382.1| GH17604 [Drosophila grimshawi]
Length = 1889
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
G+ LL+TDG ++ + R + D + NDI + GIEA + + +E+ V YG
Sbjct: 1324 GEWLLETDGTSMMKVLSERDV-DPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYG 1382
Query: 65 IEVDPRHLSLVADYMT 80
+ V+ RHL+L+ D MT
Sbjct: 1383 LYVNYRHLALLCDVMT 1398
>gi|397779349|ref|YP_006543822.1| DNA-directed RNA polymerase subunit A [Methanoculleus bourgensis
MS2]
gi|396937851|emb|CCJ35106.1| DNA-directed RNA polymerase subunit A [Methanoculleus bourgensis
MS2]
Length = 390
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
G+++L T+G N+ + + + D + N+I +A GIEA II+E +
Sbjct: 239 GGEYILYTEGSNLKDVFEVEGV-DTTRTRSNNISEIADVLGIEAGRNAIIQEALSTLNEQ 297
Query: 64 GIEVDPRHLSLVADYM 79
GI VD RH+ LVAD M
Sbjct: 298 GIGVDVRHIMLVADMM 313
>gi|308229948|gb|ADO24381.1| RNA polymerase II large subunit, partial [Drosophila cardini]
Length = 1870
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
G+ LL+TDG ++ + R + D + NDI + GIEA + + +E+ V YG
Sbjct: 1317 GEWLLETDGTSMMKVLSERDV-DPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYG 1375
Query: 65 IEVDPRHLSLVADYMT 80
+ V+ RHL+L+ D MT
Sbjct: 1376 LYVNYRHLALLCDVMT 1391
>gi|195133818|ref|XP_002011336.1| GI16472 [Drosophila mojavensis]
gi|193907311|gb|EDW06178.1| GI16472 [Drosophila mojavensis]
Length = 1889
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
G+ LL+TDG ++ + R + D + NDI + GIEA + + +E+ V YG
Sbjct: 1324 GEWLLETDGTSMMKVLSERDV-DPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYG 1382
Query: 65 IEVDPRHLSLVADYMT 80
+ V+ RHL+L+ D MT
Sbjct: 1383 LYVNYRHLALLCDVMT 1398
>gi|116753355|ref|YP_842473.1| DNA-directed RNA polymerase subunit A'' [Methanosaeta thermophila
PT]
gi|116664806|gb|ABK13833.1| DNA-directed RNA polymerase, subunit A' [Methanosaeta thermophila
PT]
Length = 384
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
+++L T+G ++ + ++ + D + N+I+ + GIEAA II E G+
Sbjct: 234 EYVLYTEGSSLKEVLEFEGV-DPTRTKTNNINEICEVLGIEAARNAIINEATETLREQGL 292
Query: 66 EVDPRHLSLVADYMT 80
+VD RH+ LVAD MT
Sbjct: 293 QVDVRHIMLVADIMT 307
>gi|374635619|ref|ZP_09707214.1| DNA-directed RNA polymerase, subunit A'' [Methanotorris formicicus
Mc-S-70]
gi|373561685|gb|EHP87914.1| DNA-directed RNA polymerase, subunit A'' [Methanotorris formicicus
Mc-S-70]
Length = 873
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
+++L ++G N+ + + + D+ + N+I + GIEAA II E+K+ G+
Sbjct: 706 EYVLYSEGSNLKEVFKIEGV-DITRTTTNNIIEIQEVLGIEAARNAIINEMKSTLDDQGL 764
Query: 66 EVDPRHLSLVADYMT 80
+VD RHL LVAD MT
Sbjct: 765 DVDIRHLMLVADIMT 779
>gi|366989121|ref|XP_003674328.1| hypothetical protein NCAS_0A13900 [Naumovozyma castellii CBS 4309]
gi|342300191|emb|CCC67948.1| hypothetical protein NCAS_0A13900 [Naumovozyma castellii CBS 4309]
Length = 1716
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDG+N++ + + D ++Y N + GIEA + REV NV A G V
Sbjct: 1305 VLETDGVNLSEVMTVPGI-DATRIYTNSFIDIMEVLGIEAGRAALYREVYNVIASDGSYV 1363
Query: 68 DPRHLSLVADYMT 80
+ RH++L+ D MT
Sbjct: 1364 NYRHMALLVDVMT 1376
>gi|32398906|emb|CAD98371.1| DNA-directed RNA polymerase II/III subunit, probable [Cryptosporidium
parvum]
Length = 1907
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 20/111 (18%)
Query: 1 METNGKHLLKTDGIN--VNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKN 58
+ G LLK GIN + + H++++ ++ GIEAA +VII+EV+
Sbjct: 1727 LAVEGYGLLKLMGINGIIGTTTVSNHVMEVREVL-----------GIEAARKVIIQEVQK 1775
Query: 59 VFAVYGIEVDPRHLSLVADYMTH-------SEFDLIIMVSKSWMLDEVKST 102
Y +++D RH+ L+AD MT S F + M + + ML + T
Sbjct: 1776 CMDAYSMDIDLRHIQLLADIMTFRGDVLGISRFGIQKMRTSTLMLASFEET 1826
>gi|67612875|ref|XP_667260.1| DNA-directed RNA polymerase II/III subunit [Cryptosporidium hominis
TU502]
gi|54658380|gb|EAL37032.1| DNA-directed RNA polymerase II/III subunit [Cryptosporidium hominis]
Length = 1869
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 20/111 (18%)
Query: 1 METNGKHLLKTDGIN--VNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKN 58
+ G LLK GIN + + H++++ ++ GIEAA +VII+EV+
Sbjct: 1689 LAVEGYGLLKLMGINGIIGTTTVSNHVMEVREVL-----------GIEAARKVIIQEVQK 1737
Query: 59 VFAVYGIEVDPRHLSLVADYMTH-------SEFDLIIMVSKSWMLDEVKST 102
Y +++D RH+ L+AD MT S F + M + + ML + T
Sbjct: 1738 CMDAYSMDIDLRHIQLLADIMTFRGDVLGISRFGIQKMRTSTLMLASFEET 1788
>gi|408381653|ref|ZP_11179201.1| DNA-directed RNA polymerase subunit A'' [Methanobacterium
formicicum DSM 3637]
gi|407815584|gb|EKF86154.1| DNA-directed RNA polymerase subunit A'' [Methanobacterium
formicicum DSM 3637]
Length = 383
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 7/138 (5%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
++ T+G N+ + + + D + NDIH + G+EAA II E + G+ V
Sbjct: 240 VIHTEGSNLGAVLKMDGV-DRVRTTTNDIHEVEKVLGVEAARNSIIHEAQTTMEEQGLTV 298
Query: 68 DPRHLSLVADYMTHSEFDLIIMVSKSWMLDEVKSTTARSVTPACEPNSHHDVKKIEFKKQ 127
D RH+ LVAD MT ++ + + + E S AR+ + E H + + + +
Sbjct: 299 DVRHIMLVADMMTAD--GIVKSIGRHGISGEKASVLARA---SFEETGKH-LLRASIRGE 352
Query: 128 NKILPLVLQNSLTGSSYP 145
L +++N + G P
Sbjct: 353 VDHLTGIIENIIIGQPIP 370
>gi|66475716|ref|XP_627674.1| DNA-directed RNA polymerase III C1 subunit [Cryptosporidium parvum
Iowa II]
gi|46229106|gb|EAK89955.1| DNA-directed RNA polymerase III C1 subunit [Cryptosporidium parvum
Iowa II]
Length = 1871
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 20/111 (18%)
Query: 1 METNGKHLLKTDGIN--VNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKN 58
+ G LLK GIN + + H++++ ++ GIEAA +VII+EV+
Sbjct: 1691 LAVEGYGLLKLMGINGIIGTTTVSNHVMEVREVL-----------GIEAARKVIIQEVQK 1739
Query: 59 VFAVYGIEVDPRHLSLVADYMTH-------SEFDLIIMVSKSWMLDEVKST 102
Y +++D RH+ L+AD MT S F + M + + ML + T
Sbjct: 1740 CMDAYSMDIDLRHIQLLADIMTFRGDVLGISRFGIQKMRTSTLMLASFEET 1790
>gi|340056888|emb|CCC51227.1| DNA-directed RNA polymerase iii largest subunit [Trypanosoma vivax
Y486]
Length = 1533
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 29 NKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
+++ N + + GIEAA +VI+ E++N+ Y + +D RH+ L+AD MT
Sbjct: 1369 SRVTCNHVAVIERVLGIEAARQVIVDEIQNILKAYSLSIDIRHVYLLADLMTQ 1421
>gi|357628227|gb|EHJ77617.1| largest subunit of the RNA polymerase II complex [Danaus plexippus]
Length = 1895
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + + NDI + GIEA + + +E+ V YG+ V
Sbjct: 1326 LLETDGTSLMKVLSERDV-DPVRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYV 1384
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1385 NYRHLALLCDVMT 1397
>gi|332024635|gb|EGI64832.1| DNA-directed RNA polymerase III subunit RPC1 [Acromyrmex echinatior]
Length = 1988
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 1 METNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 60
+ + K L +G N + R +L K N+ + T GIEAA I+ E+K+V
Sbjct: 1821 LGSKSKFTLFVEGDNFREVMATRGILG-EKTKSNNTIEVFKTLGIEAARTTIMSEIKSVM 1879
Query: 61 AVYGIEVDPRHLSLVADYMT 80
+GI +D RHL L+AD MT
Sbjct: 1880 ENHGISIDCRHLMLLADLMT 1899
>gi|347522776|ref|YP_004780346.1| DNA-directed RNA polymerase subunit A'' [Pyrolobus fumarii 1A]
gi|343459658|gb|AEM38094.1| DNA-directed RNA polymerase, subunit A'' [Pyrolobus fumarii 1A]
Length = 424
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%)
Query: 34 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHS 82
N+I + GIEAA +I+E+K V G++VD RHL LVAD MT +
Sbjct: 292 NNIREIEQVLGIEAARYALIKEMKGVLDDQGLDVDIRHLILVADIMTQT 340
>gi|403416877|emb|CCM03577.1| predicted protein [Fibroporia radiculosa]
Length = 1403
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 34 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH-------SEFDL 86
N I +A GIEAA R II E++ + +G+ +DPRH+ L+ D M++ + F +
Sbjct: 1270 NHIIEVAQVLGIEAARRTIINEIQYTMSSHGMSIDPRHVMLLGDVMSYKGEVLGITRFGV 1329
Query: 87 IIMVSKSWMLDEVKSTT 103
M ML + TT
Sbjct: 1330 AKMKDSVLMLASFEKTT 1346
>gi|160331067|ref|XP_001712241.1| rpc1 [Hemiselmis andersenii]
gi|159765688|gb|ABW97916.1| rpc1 [Hemiselmis andersenii]
Length = 1323
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 36/56 (64%)
Query: 25 LLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMT 80
++L +Y N I + T+GIEA+ + II E++ +F ++ I ++ +H L+A+ MT
Sbjct: 1197 FVNLQSIYSNHILMILETFGIEASRKAIIIEIQKIFQLHNISINKKHFFLLAEIMT 1252
>gi|441432235|ref|YP_007354277.1| DNA directed RNA polymerase (II) subunit 1 [Acanthamoeba polyphaga
moumouvirus]
gi|440383315|gb|AGC01841.1| DNA directed RNA polymerase (II) subunit 1 [Acanthamoeba polyphaga
moumouvirus]
Length = 1504
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 4 NGKH-LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 62
N KH ++ TDGIN++ I+Q + +L++ NDI + TYG+EAA I+E
Sbjct: 1321 NNKHFIVVTDGINLSEIAQINGI-NLDETICNDIVTIYETYGVEAARTAFIKEFTIAIES 1379
Query: 63 YGIEVDPRHLSLVADYMTH 81
G + +H+ L+AD +TH
Sbjct: 1380 SGGFSNYQHIELLADAITH 1398
>gi|429962254|gb|ELA41798.1| hypothetical protein VICG_01150 [Vittaforma corneae ATCC 50505]
Length = 1442
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 34 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH-------SEFDL 86
NDI + T GIEAA +I++EV+ YGI+VD RH L+AD M + F +
Sbjct: 1323 NDILEVEKTLGIEAARSLIMKEVEYTMGKYGIKVDHRHTMLLADTMAFKGEILGITRFGI 1382
Query: 87 IIMVSKSWMLDEVKSTT 103
M + + ML + T
Sbjct: 1383 GKMRTSTLMLASFEQTA 1399
>gi|400603032|gb|EJP70630.1| RNA polymerase Rpb1 [Beauveria bassiana ARSEF 2860]
Length = 1759
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 35/56 (62%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
+D + Y ND++ + +G+EA +++E+ NV A G V+ RH++L+ D MT+
Sbjct: 1343 VDPTRTYSNDLYQITEVFGVEAVRSALVKELTNVLAFDGSYVNHRHIALLCDIMTY 1398
>gi|371945115|gb|AEX62936.1| DNA-directed RNA polymerase subunit 1 [Moumouvirus Monve]
Length = 1504
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 4 NGKH-LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 62
N KH ++ TDGIN++ I+Q + +L++ NDI + TYG+EAA I+E
Sbjct: 1321 NNKHFIVVTDGINLSEIAQINGI-NLDETICNDIVTIYETYGVEAARTAFIKEFTIAIES 1379
Query: 63 YGIEVDPRHLSLVADYMTH 81
G + +H+ L+AD +TH
Sbjct: 1380 SGGFSNYQHIELLADAITH 1398
>gi|269986457|gb|EEZ92743.1| RNA polymerase Rpb1 domain 5 [Candidatus Parvarchaeum acidiphilum
ARMAN-4]
Length = 375
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 3 TNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 62
+ G + +KT G N++ + + + D NDI ++ GIEAA +II EV
Sbjct: 213 SQGNYWIKTIGTNLSEVLKMEEI-DQKNTVSNDIIEVSKVLGIEAARNLIIEEVNATLQN 271
Query: 63 YGIEVDPRHLSLVADYM 79
G+ VD RH+ L+AD M
Sbjct: 272 VGLTVDLRHIFLIADAM 288
>gi|336253136|ref|YP_004596243.1| DNA-directed RNA polymerase subunit A'' [Halopiger xanaduensis
SH-6]
gi|335337125|gb|AEH36364.1| DNA-directed RNA polymerase, subunit A'' [Halopiger xanaduensis
SH-6]
Length = 407
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 56/110 (50%), Gaps = 4/110 (3%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI-EVDPRHLSLVADYMTH-SE 83
+D ++ N+IH + GIEAA II E N A G+ +V+ RHL LVAD MT+ E
Sbjct: 263 VDASRTTCNNIHEIHRNLGIEAAREAIIEETNNTLAEQGLDDVNVRHLMLVADIMTNRGE 322
Query: 84 FDLIIMVSKSWMLDEVKSTTARSVTPACEPNS--HHDVKKIEFKKQNKIL 131
+ I S D V + A VT N+ H +V K++ +N I+
Sbjct: 323 IESIGRHGISGSKDSVLARAAFEVTVNHLLNAAIHGEVDKLQGVTENVIV 372
>gi|171695074|ref|XP_001912461.1| hypothetical protein [Podospora anserina S mat+]
gi|170947779|emb|CAP59942.1| unnamed protein product [Podospora anserina S mat+]
Length = 1748
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
+D + Y ND++ + +GIEAA ++ E+ V A G V+ RHL+L+ D MT+
Sbjct: 1347 VDTTRTYTNDLYQVVDVFGIEAARSALMAELTQVLAFDGSYVNHRHLALLVDVMTY 1402
>gi|169806385|ref|XP_001827937.1| DNA-directed RNA polymerase, beta' subunit-160 kD subunit
[Enterocytozoon bieneusi H348]
gi|161779005|gb|EDQ31032.1| DNA-directed RNA polymerase, beta' subunit-160 kD subunit
[Enterocytozoon bieneusi H348]
Length = 1174
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 34 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMT 80
N+I + ST GIEAA II E++ +GI+++ RHL L+AD MT
Sbjct: 1057 NNILEIESTLGIEAARESIINEIEYTIGTHGIQINCRHLMLLADTMT 1103
>gi|91773157|ref|YP_565849.1| DNA-directed RNA polymerase subunit A'' [Methanococcoides burtonii
DSM 6242]
gi|91712172|gb|ABE52099.1| DNA-directed RNA polymerase subunit A'' [Methanococcoides burtonii
DSM 6242]
Length = 386
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMT 80
+DL++ N+I + +GIEAA II+E + G+ VD RHL LV+D MT
Sbjct: 256 IDLSRTSTNNIGEIYEVFGIEAARFAIIKEASDTLREQGLTVDIRHLMLVSDIMT 310
>gi|448396748|ref|ZP_21569196.1| DNA-directed RNA polymerase subunit A'' [Haloterrigena limicola JCM
13563]
gi|445673277|gb|ELZ25838.1| DNA-directed RNA polymerase subunit A'' [Haloterrigena limicola JCM
13563]
Length = 398
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI-EVDPRHLSLVADYMTH 81
+D ++ N+IH + GIEAA II E N A G+ +V+ RHL LVAD MT+
Sbjct: 263 VDASRTTCNNIHEIRRNLGIEAAREAIIEETNNTLAEQGLDDVNVRHLMLVADIMTN 319
>gi|402589186|gb|EJW83118.1| hypothetical protein WUBG_05969 [Wuchereria bancrofti]
Length = 409
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
+D + Y N+ +A GIEAA II E+ + A +GI +D RH+ L+AD MT+
Sbjct: 262 VDGRRTYFNNALTVADVLGIEAARSSIISEILSTMASHGIGLDQRHVMLLADLMTY 317
>gi|303389791|ref|XP_003073127.1| DNA-directed RNA polymerase subunit alpha [Encephalitozoon
intestinalis ATCC 50506]
gi|303302272|gb|ADM11767.1| DNA-directed RNA polymerase subunit alpha [Encephalitozoon
intestinalis ATCC 50506]
Length = 1315
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 19/103 (18%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
++ TDGI + ++ N + + GIEAA II E++ + +GI++
Sbjct: 1182 VINTDGIRCSSVTS------------NSVTEVEEVLGIEAARAQIIHEIEYTISNHGIKI 1229
Query: 68 DPRHLSLVADYMTH-------SEFDLIIMVSKSWMLDEVKSTT 103
DPRH+ L+AD MT+ + F + M + ML + T+
Sbjct: 1230 DPRHIMLLADTMTYRGEVFGITRFGISKMSRSTLMLASFEQTS 1272
>gi|357148941|ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Brachypodium distachyon]
Length = 1392
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH---- 81
+D K N I + T GIEAA R II E++ F + +D RH+ L+AD MT+
Sbjct: 1252 VDAKKTKSNHIMEVNQTLGIEAARRSIIDEIRYTFESNNMIIDQRHMMLLADLMTYKGEV 1311
Query: 82 ---SEFDLIIMVSKSWMLDEVKST 102
+ F ++ M S ML + T
Sbjct: 1312 LGITRFGIVKMKSSVLMLASFEKT 1335
>gi|345567741|gb|EGX50669.1| hypothetical protein AOL_s00075g95 [Arthrobotrys oligospora ATCC
24927]
Length = 1442
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 2 ETNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
E++G + L +G + ++ K N + M + GIEAA II E+
Sbjct: 1265 ESSGNNTLCVEGYGLRQCMNTDGVVG-TKTKTNSVMEMRTVLGIEAARFTIIDEISFTMR 1323
Query: 62 VYGIEVDPRHLSLVADYMTH 81
+G++VDPRH+ L+ D MT+
Sbjct: 1324 EHGMDVDPRHIQLLGDVMTY 1343
>gi|312073209|ref|XP_003139417.1| RNA polymerase Rpb1 [Loa loa]
gi|307765420|gb|EFO24654.1| RNA polymerase Rpb1 [Loa loa]
Length = 1403
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
+D + Y N+ +A GIEAA II E+ + A +GI +D RH+ L+AD MT+
Sbjct: 1256 VDGRRTYFNNALTVADVLGIEAARSSIISEILSTMASHGIGLDQRHVMLLADLMTY 1311
>gi|302808041|ref|XP_002985715.1| hypothetical protein SELMODRAFT_446351 [Selaginella moellendorffii]
gi|300146624|gb|EFJ13293.1| hypothetical protein SELMODRAFT_446351 [Selaginella moellendorffii]
Length = 1393
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 8/109 (7%)
Query: 2 ETNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
+ GK+ L +G N+ + + D + N I GIEAA II+E++
Sbjct: 1230 QEKGKYNLLVEGTNLKAVMGTEGV-DGRETTSNHIFETVEVLGIEAARNGIIKEIQYTMG 1288
Query: 62 VYGIEVDPRHLSLVADYMTH-------SEFDLIIMVSKSWMLDEVKSTT 103
+G+ +D RH+ L+AD MT+ + F + M ML + TT
Sbjct: 1289 SHGMSIDQRHMMLLADVMTYRGEILGITRFGMAKMKDSVLMLASFEKTT 1337
>gi|403346305|gb|EJY72545.1| hypothetical protein OXYTRI_06457 [Oxytricha trifallax]
Length = 1886
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 2 ETNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
+T+ +L+TDG+ + I ++ D K NDI + + GIEA +I E++ V
Sbjct: 1316 QTSDNFMLETDGVALQKILSVNNV-DYKKTVSNDILEILNVLGIEAVRMSLINELRAVLN 1374
Query: 62 VYGIEVDPRHLSLVADYMTH 81
YGI V+ RHLS + D M
Sbjct: 1375 FYGIYVNYRHLSTLCDVMCQ 1394
>gi|170584528|ref|XP_001897051.1| RNA polymerase Rpb1, domain 1 family protein [Brugia malayi]
gi|158595586|gb|EDP34129.1| RNA polymerase Rpb1, domain 1 family protein [Brugia malayi]
Length = 1404
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
+D + Y N+ +A GIEAA II E+ + A +GI +D RH+ L+AD MT+
Sbjct: 1257 VDGRRTYFNNALTVADVLGIEAARSSIISEILSTMASHGIGLDQRHVMLLADLMTY 1312
>gi|451927572|gb|AGF85450.1| directed RNA polymerase (II) subunit 1 [Moumouvirus goulette]
Length = 1493
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 4 NGKH-LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 62
N KH ++ TDGIN++ I+Q + +L++ NDI + TYG+EAA I+E
Sbjct: 1310 NNKHFVVVTDGINLSEIAQINGI-NLDETICNDIVTIYETYGVEAARTAFIKEFTIAIES 1368
Query: 63 YGIEVDPRHLSLVADYMTH 81
G + +H+ L+AD +TH
Sbjct: 1369 SGGFSNYQHIELLADAITH 1387
>gi|432329278|ref|YP_007247422.1| DNA-directed RNA polymerase, subunit A'' [Aciduliprofundum sp.
MAR08-339]
gi|432135987|gb|AGB05256.1| DNA-directed RNA polymerase, subunit A'' [Aciduliprofundum sp.
MAR08-339]
Length = 516
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
N + ++ T G N+ + + D + N+I +A G+EAA II E N
Sbjct: 367 NSEWVIYTQGSNLGDVLDIEEV-DAARTRTNNIIEIADVLGVEAARNAIIEEALNTLHQQ 425
Query: 64 GIEVDPRHLSLVADYMTHSEFDLIIMVSKSWMLDEVKSTTARSVTPACEPNSHH 117
G+ VD RH+ LVAD MT++ + + + + E +S AR+ A E S H
Sbjct: 426 GLNVDIRHIMLVADTMTYN--GTVEAIGRHGIAGEKESVLARA---AFEITSKH 474
>gi|383620452|ref|ZP_09946858.1| DNA-directed RNA polymerase subunit A'' [Halobiforma lacisalsi AJ5]
gi|448697813|ref|ZP_21698691.1| DNA-directed RNA polymerase subunit A'' [Halobiforma lacisalsi AJ5]
gi|445781179|gb|EMA32040.1| DNA-directed RNA polymerase subunit A'' [Halobiforma lacisalsi AJ5]
Length = 404
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI-EVDPRHLSLVADYMTH 81
+D ++ N+IH + GIEAA II E N A G+ +V+ RHL LVAD MT+
Sbjct: 263 VDASRTTCNNIHEIRRNLGIEAAREAIIEETNNTLAEQGLDDVNVRHLMLVADIMTN 319
>gi|150399425|ref|YP_001323192.1| DNA-directed RNA polymerase subunit A'' [Methanococcus vannielii
SB]
gi|1173130|sp|P14247.2|RPOA2_METVS RecName: Full=DNA-directed RNA polymerase subunit A''
gi|505293|emb|CAA51729.1| DNA-directed RNA polymerase [Methanococcus vannielii]
gi|150012128|gb|ABR54580.1| DNA-directed RNA polymerase, subunit A'' [Methanococcus vannielii
SB]
Length = 386
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
+++L ++G N+ + + + D K N+I + G+EAA IIRE+ G+
Sbjct: 234 EYVLYSEGSNLKEVFEIDGV-DTTKTTTNNIVEIQDVLGVEAARNAIIREMDATLGNQGL 292
Query: 66 EVDPRHLSLVADYMT 80
VD RHL +VAD MT
Sbjct: 293 TVDKRHLMMVADLMT 307
>gi|452210795|ref|YP_007490909.1| DNA-directed RNA polymerase subunit A'' [Methanosarcina mazei
Tuc01]
gi|452100697|gb|AGF97637.1| DNA-directed RNA polymerase subunit A'' [Methanosarcina mazei
Tuc01]
Length = 407
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
++ L T+G + + Q+ + D + N+I+ + GIEAA II+E + G+
Sbjct: 241 EYTLYTEGSALREVLQFEGV-DRTRTSTNNINEIYEVLGIEAARNAIIKEATDTLREQGL 299
Query: 66 EVDPRHLSLVADYMT 80
VD RH+ LVAD MT
Sbjct: 300 TVDIRHIMLVADLMT 314
>gi|344303415|gb|EGW33664.1| hypothetical protein SPAPADRAFT_134208 [Spathaspora passalidarum NRRL
Y-27907]
Length = 1748
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDG+N+ + + D ++ Y ND + S GIEA + +E+ NV A G V
Sbjct: 1315 VLETDGVNLADVMAVPGV-DSSRTYSNDFIEILSVLGIEATRTALFKEILNVIAFDGSYV 1373
Query: 68 DPRHLSLVADYMT 80
+ RH++L+ D MT
Sbjct: 1374 NYRHMALLVDVMT 1386
>gi|342183998|emb|CCC93479.1| DNA-directed RNA polymerase iii largest subunit [Trypanosoma
congolense IL3000]
Length = 1537
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 34 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
N + + GIEAA RVI+ E++++ Y + +D RH+ L+AD MT
Sbjct: 1378 NHVAVVERVLGIEAARRVIVDEIQSILKAYSLSIDVRHIYLLADLMTQ 1425
>gi|21228372|ref|NP_634294.1| DNA-directed RNA polymerase subunit A'' [Methanosarcina mazei Go1]
gi|23822083|sp|Q8PUR2.1|RPOA2_METMA RecName: Full=DNA-directed RNA polymerase subunit A''
gi|20906842|gb|AAM31966.1| DNA-directed RNA polymerase subunit A'' [Methanosarcina mazei Go1]
Length = 408
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
++ L T+G + + Q+ + D + N+I+ + GIEAA II+E + G+
Sbjct: 242 EYTLYTEGSALREVLQFEGV-DRTRTSTNNINEIYEVLGIEAARNAIIKEATDTLREQGL 300
Query: 66 EVDPRHLSLVADYMT 80
VD RH+ LVAD MT
Sbjct: 301 TVDIRHIMLVADLMT 315
>gi|374107397|gb|AEY96305.1| FADR086Cp [Ashbya gossypii FDAG1]
Length = 1738
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDG+N++ + + D ++Y N + + GIEA + +EV NV A G V
Sbjct: 1306 VLETDGVNLSEVMSVPGV-DPTRIYTNSFIDIMNVLGIEAGRAALYKEVYNVIASDGSYV 1364
Query: 68 DPRHLSLVADYMTHSEF 84
+ RH++L+ D MT F
Sbjct: 1365 NYRHMALLVDVMTSQGF 1381
>gi|302307500|ref|NP_984182.2| ADR086Cp [Ashbya gossypii ATCC 10895]
gi|442570012|sp|Q75A34.2|RPB1_ASHGO RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA
polymerase II subunit 1; Short=RNA polymerase II subunit
B1; AltName: Full=DNA-directed RNA polymerase III largest
subunit
gi|299789031|gb|AAS52006.2| ADR086Cp [Ashbya gossypii ATCC 10895]
Length = 1745
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDG+N++ + + D ++Y N + + GIEA + +EV NV A G V
Sbjct: 1306 VLETDGVNLSEVMSVPGV-DPTRIYTNSFIDIMNVLGIEAGRAALYKEVYNVIASDGSYV 1364
Query: 68 DPRHLSLVADYMTHSEF 84
+ RH++L+ D MT F
Sbjct: 1365 NYRHMALLVDVMTSQGF 1381
>gi|520517|gb|AAA50229.1| RNA polymerase II, largest subunit, partial [Ilyanassa obsoleta]
Length = 1343
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDG ++ + R + D + Y NDI + +T GIEA + I RE+ +V + G V
Sbjct: 1249 ILETDGSSLMKVLSERDV-DPVRTYTNDIVEVFATLGIEAVRKAIEREMVHVISFDGSYV 1307
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1308 NYRHLALLCDVMT 1320
>gi|213410469|ref|XP_002176004.1| DNA-directed RNA polymerase III complex large subunit Rpc1
[Schizosaccharomyces japonicus yFS275]
gi|212004051|gb|EEB09711.1| DNA-directed RNA polymerase III complex large subunit Rpc1
[Schizosaccharomyces japonicus yFS275]
Length = 1406
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 29 NKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMT 80
+K + N + M + GIEAA + II E+ + +G+ VDPRH+ L+ D MT
Sbjct: 1259 SKTFTNHVMEMNAVLGIEAARQSIIYEIDSTMRNHGLTVDPRHIMLLGDVMT 1310
>gi|407464207|ref|YP_006775089.1| bifunctional DNA-directed RNA polymerase subunit A'/A'' [Candidatus
Nitrosopumilus sp. AR2]
gi|407047395|gb|AFS82147.1| bifunctional DNA-directed RNA polymerase subunit A'/A'' [Candidatus
Nitrosopumilus sp. AR2]
Length = 1263
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 65/138 (47%), Gaps = 7/138 (5%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+++T G N+ + + + + D + N++ +A T GIEAA +I E+ + G+EV
Sbjct: 1117 VIQTTGSNIAKVLEVKGI-DKKNVRTNNVFEIAGTLGIEAARNSLIDELNHTLGDQGLEV 1175
Query: 68 DPRHLSLVADYMTHSEFDLIIMVSKSWMLDEVKSTTARSVTPACEPNSHHDVKKIEFKKQ 127
D R++ LV+D M + + + + + S AR+ P H E ++
Sbjct: 1176 DNRYIMLVSDLMCSRGY--MQQIGRHGIAGTKDSVLARAAFEITVPTIAHAALGGEVEQ- 1232
Query: 128 NKILPLVLQNSLTGSSYP 145
L + +N + GS+ P
Sbjct: 1233 ---LKGITENVIVGSNIP 1247
>gi|308800888|ref|XP_003075225.1| RNA polymerase I, large subunit (ISS) [Ostreococcus tauri]
gi|116061779|emb|CAL52497.1| RNA polymerase I, large subunit (ISS) [Ostreococcus tauri]
Length = 1406
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 8/107 (7%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
+G + L +GIN+ + + + + N++ T GIEAA II+E+ + +
Sbjct: 1228 DGTYNLLVEGINLQAVMGIDGVKGI-ETTTNNVMECERTLGIEAARACIIKEIDDTMRAH 1286
Query: 64 GIEVDPRHLSLVADYMTH-------SEFDLIIMVSKSWMLDEVKSTT 103
G+ +D RH L+AD MT+ + F + M ML + TT
Sbjct: 1287 GMSIDNRHSMLLADVMTYKGEVLGITRFGMAKMKDSVLMLASFEKTT 1333
>gi|50346883|gb|AAT75148.1| RNA polymerase 2 [Caenorhabditis sp. SB341]
Length = 622
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDG + + RH+ D + NDI + GIEA + I RE+ NV + G V
Sbjct: 543 ILETDGTALLRVLSERHI-DPVRTSSNDICEIFEVLGIEAVRKAIEREMHNVISFDGSYV 601
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 602 NYRHLALLCDVMT 614
>gi|333911409|ref|YP_004485142.1| DNA-directed RNA polymerase subunit A'' [Methanotorris igneus Kol
5]
gi|333751998|gb|AEF97077.1| DNA-directed RNA polymerase, subunit A'' [Methanotorris igneus Kol
5]
Length = 864
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
+++L ++G N+ + + + D + N+I + GIEAA II E+K+ G+
Sbjct: 697 EYVLYSEGSNLKEVFKIEGV-DKTRTITNNIIEIQEVLGIEAARNAIINEMKSTLEEQGL 755
Query: 66 EVDPRHLSLVADYMT 80
+VD RHL LVAD MT
Sbjct: 756 DVDIRHLMLVADIMT 770
>gi|300707342|ref|XP_002995883.1| hypothetical protein NCER_101107 [Nosema ceranae BRL01]
gi|239605116|gb|EEQ82212.1| hypothetical protein NCER_101107 [Nosema ceranae BRL01]
Length = 1335
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 34 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH-------SEFDL 86
N I + GIEAA II E++ V +GI++DPRH+ L+AD MT+ + F +
Sbjct: 1215 NAILEIQEVLGIEAARAHIISEIEYVVGKHGIKIDPRHVMLLADTMTYKGEVLGITRFGI 1274
Query: 87 IIMVSKSWMLDEVKSTT 103
M + ML + T+
Sbjct: 1275 SKMSCSTLMLASFEQTS 1291
>gi|154151471|ref|YP_001405089.1| DNA-directed RNA polymerase subunit A'' [Methanoregula boonei 6A8]
gi|154000023|gb|ABS56446.1| DNA-directed RNA polymerase, subunit A'' [Methanoregula boonei 6A8]
Length = 390
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
G+++L T+G N+ + + D + N+I +A GIEAA II E ++ G
Sbjct: 241 GEYILYTEGSNLKDVFDVAGV-DTTRTRTNNISEIAQVLGIEAARNAIIHEAQSTLNEQG 299
Query: 65 IEVDPRHLSLVADYM 79
I VD RH+ LV+D M
Sbjct: 300 ILVDVRHIMLVSDMM 314
>gi|44781|emb|CAA34086.1| RNA polymerase beta' subunit (AA 215) [Methanococcus vannielii]
Length = 216
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
+++L ++G N+ + + + D K N+I + G+EAA IIRE+ G+
Sbjct: 64 EYVLYSEGSNLKEVFEIDGV-DTTKTTTNNIVEIQDVLGVEAARNAIIREMDATLGNQGL 122
Query: 66 EVDPRHLSLVADYMT 80
VD RHL +VAD MT
Sbjct: 123 TVDKRHLMMVADLMT 137
>gi|162606436|ref|XP_001713248.1| DNA-directed RNA polymerase I chain-like protein [Guillardia theta]
gi|12580714|emb|CAC27032.1| DNA-directed RNA polymerase I chain-like protein [Guillardia theta]
Length = 1434
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 39/73 (53%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 68
++ G N+ +++++ +DI M+ +GIEA ++ E+ N+F GI +
Sbjct: 1295 IQISGNNIEIFFSLSEFFKIDEIFTSDILKMSIIFGIEAGREILTIELMNIFKNQGIVIS 1354
Query: 69 PRHLSLVADYMTH 81
+H+ ++DYMT
Sbjct: 1355 NKHIDTISDYMTR 1367
>gi|284163649|ref|YP_003401928.1| DNA-directed RNA polymerase subunit A'' [Haloterrigena turkmenica
DSM 5511]
gi|284013304|gb|ADB59255.1| DNA-directed RNA polymerase, subunit A'' [Haloterrigena turkmenica
DSM 5511]
Length = 397
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI-EVDPRHLSLVADYMTH 81
+D ++ N+IH + GIEAA II E N A G+ +V+ RHL LVAD MT+
Sbjct: 262 VDASRTTCNNIHEIHRNLGIEAAREAIIEETNNTLAEQGLDDVNVRHLMLVADMMTN 318
>gi|378756182|gb|EHY66207.1| RNA polymerase 2, partial [Nematocida sp. 1 ERTm2]
Length = 773
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 12/76 (15%)
Query: 7 HLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIE 66
+L T+G+N + S N+I+ T GIEAA I++E++ +GI
Sbjct: 637 EILGTEGVNSSETS------------TNNIYETYKTLGIEAARESIVKEIQYTIGRHGIS 684
Query: 67 VDPRHLSLVADYMTHS 82
VD RH+ L+AD M +
Sbjct: 685 VDARHIGLLADVMCFT 700
>gi|346321728|gb|EGX91327.1| DNA-directed RNA polymerase II largest subunit [Cordyceps militaris
CM01]
Length = 1757
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 35/56 (62%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
+D + Y ND++ + +G+EA +I+E+ NV + G V+ RH++L+ D MT+
Sbjct: 1343 VDPRRTYSNDLYQITEVFGVEAVRSALIKELSNVLSFDGSYVNHRHIALLCDIMTY 1398
>gi|147921533|ref|YP_684651.1| DNA-directed RNA polymerase subunit A'' [Methanocella arvoryzae
MRE50]
gi|110620047|emb|CAJ35325.1| DNA-directed RNA polymerase, subunit A2 [Methanocella arvoryzae
MRE50]
Length = 384
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMT 80
+D + N+I+ +A GIEAA II+E + + G+ VD RH+ LVAD MT
Sbjct: 254 VDPARTGTNNINEIAEVLGIEAARNAIIKETLDTLSEQGLTVDIRHIMLVADMMT 308
>gi|401623626|gb|EJS41719.1| rpo31p [Saccharomyces arboricola H-6]
Length = 1460
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
NGK L +G + + ++ +K N + + S GIEAA I+RE+ + +
Sbjct: 1288 NGKRELLVEGYGLRDVMCTDGVIG-SKTTTNHVLEVFSVLGIEAARYSIVREINYTMSNH 1346
Query: 64 GIEVDPRHLSLVADYMTH 81
G+ VDPRH+ L+ D MT+
Sbjct: 1347 GMSVDPRHIQLLGDVMTY 1364
>gi|406700618|gb|EKD03783.1| DNA-directed RNA polymerase iii largest subunit [Trichosporon asahii
var. asahii CBS 8904]
Length = 1433
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 19/105 (18%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
+ ++ TDG+N Y ++ H+++ K+ GIEAA + I E+++ +G+
Sbjct: 1269 QEVMGTDGVN-GYQTRTNHVMETAKVL-----------GIEAARQTIYDEIQHTMRSHGM 1316
Query: 66 EVDPRHLSLVADYMTH-------SEFDLIIMVSKSWMLDEVKSTT 103
+DPRH+ L+ D MT+ + F + M ML + TT
Sbjct: 1317 SIDPRHVMLLGDVMTYKGEVLGITRFGVQKMKDSVLMLASFEKTT 1361
>gi|401882581|gb|EJT46834.1| DNA-directed RNA polymerase iii largest subunit [Trichosporon asahii
var. asahii CBS 2479]
Length = 1433
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 19/105 (18%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
+ ++ TDG+N Y ++ H+++ K+ GIEAA + I E+++ +G+
Sbjct: 1269 QEVMGTDGVN-GYQTRTNHVMETAKVL-----------GIEAARQTIYDEIQHTMRSHGM 1316
Query: 66 EVDPRHLSLVADYMTH-------SEFDLIIMVSKSWMLDEVKSTT 103
+DPRH+ L+ D MT+ + F + M ML + TT
Sbjct: 1317 SIDPRHVMLLGDVMTYKGEVLGITRFGVQKMKDSVLMLASFEKTT 1361
>gi|448347129|ref|ZP_21536008.1| DNA-directed RNA polymerase subunit A'' [Natrinema altunense JCM
12890]
gi|445631466|gb|ELY84698.1| DNA-directed RNA polymerase subunit A'' [Natrinema altunense JCM
12890]
Length = 398
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI-EVDPRHLSLVADYMTH 81
+D ++ N+IH + GIEAA II E N A G+ +V+ RHL LVAD MT+
Sbjct: 263 VDASRTTCNNIHEIHRNLGIEAAREAIIEETNNTLAEQGLDDVNVRHLMLVADMMTN 319
>gi|448336438|ref|ZP_21525537.1| DNA-directed RNA polymerase subunit A'' [Natrinema pallidum DSM
3751]
gi|445629178|gb|ELY82472.1| DNA-directed RNA polymerase subunit A'' [Natrinema pallidum DSM
3751]
Length = 398
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI-EVDPRHLSLVADYMTH 81
+D ++ N+IH + GIEAA II E N A G+ +V+ RHL LVAD MT+
Sbjct: 263 VDASRTTCNNIHEIHRNLGIEAAREAIIEETNNTLAEQGLDDVNVRHLMLVADMMTN 319
>gi|448383942|ref|ZP_21562940.1| DNA-directed RNA polymerase subunit A'' [Haloterrigena
thermotolerans DSM 11522]
gi|445658931|gb|ELZ11743.1| DNA-directed RNA polymerase subunit A'' [Haloterrigena
thermotolerans DSM 11522]
Length = 398
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI-EVDPRHLSLVADYMTH 81
+D ++ N+IH + GIEAA II E N A G+ +V+ RHL LVAD MT+
Sbjct: 263 VDASRTTCNNIHEIHRNLGIEAAREAIIEETNNTLAEQGLDDVNVRHLMLVADMMTN 319
>gi|358057836|dbj|GAA96338.1| hypothetical protein E5Q_03004 [Mixia osmundae IAM 14324]
Length = 2471
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 68
L+TDG+N+ + + D + Y N I + + GIEAA ++RE++ V G V+
Sbjct: 1345 LETDGLNLRQVLTIDGV-DARRTYSNSIVEVYNVLGIEAARAALLRELRLVIEFDGSYVN 1403
Query: 69 PRHLSLVADYMTH 81
RHLSL+ D MT+
Sbjct: 1404 YRHLSLLCDLMTN 1416
>gi|397771992|ref|YP_006539538.1| DNA-directed RNA polymerase, subunit A'' [Natrinema sp. J7-2]
gi|448342575|ref|ZP_21531523.1| DNA-directed RNA polymerase subunit A'' [Natrinema gari JCM 14663]
gi|397681085|gb|AFO55462.1| DNA-directed RNA polymerase, subunit A'' [Natrinema sp. J7-2]
gi|445625330|gb|ELY78692.1| DNA-directed RNA polymerase subunit A'' [Natrinema gari JCM 14663]
Length = 398
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI-EVDPRHLSLVADYMTH 81
+D ++ N+IH + GIEAA II E N A G+ +V+ RHL LVAD MT+
Sbjct: 263 VDASRTTCNNIHEIHRNLGIEAAREAIIEETNNTLAEQGLDDVNVRHLMLVADMMTN 319
>gi|449330082|gb|AGE96346.1| DNA-directed RNA polymerase III 160 kDa subunit [Encephalitozoon
cuniculi]
Length = 1349
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 34 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH-------SEFDL 86
N I + GIEAA II E++ + +GI++DPRH+ L+AD MT+ + F +
Sbjct: 1230 NSITEVEEVLGIEAARAQIIHEIEYTISNHGIKIDPRHIMLLADTMTYRGEVFGITRFGI 1289
Query: 87 IIMVSKSWMLDEVKSTT 103
M + ML + T+
Sbjct: 1290 SKMSRSTLMLASFEQTS 1306
>gi|448388146|ref|ZP_21565086.1| DNA-directed RNA polymerase subunit A'' [Haloterrigena salina JCM
13891]
gi|445670797|gb|ELZ23394.1| DNA-directed RNA polymerase subunit A'' [Haloterrigena salina JCM
13891]
Length = 397
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI-EVDPRHLSLVADYMTH 81
+D ++ N+IH + GIEAA II E N A G+ +V+ RHL LVAD MT+
Sbjct: 262 VDASRTTCNNIHEIHRNLGIEAAREAIIEETNNTLAEQGLDDVNVRHLMLVADMMTN 318
>gi|383320562|ref|YP_005381403.1| DNA-directed RNA polymerase subunit A'' [Methanocella conradii
HZ254]
gi|379321932|gb|AFD00885.1| DNA-directed RNA polymerase, subunit A'' [Methanocella conradii
HZ254]
Length = 388
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMT 80
+D + N+I+ +A GIEAA II E + + G+ VD RH+ LVAD MT
Sbjct: 254 VDAARTKTNNINEIAEVLGIEAARNAIINEALDTLSEQGLTVDIRHIMLVADMMT 308
>gi|448307076|ref|ZP_21496977.1| DNA-directed RNA polymerase subunit A'' [Natronorubrum bangense JCM
10635]
gi|445596623|gb|ELY50708.1| DNA-directed RNA polymerase subunit A'' [Natronorubrum bangense JCM
10635]
Length = 398
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI-EVDPRHLSLVADYMTH 81
+D ++ N+IH + GIEAA II E N A G+ +V+ RHL LVAD MT+
Sbjct: 262 VDASRTTCNNIHEIHRNLGIEAARETIIEETNNTLAEQGLDDVNVRHLMLVADMMTN 318
>gi|354545641|emb|CCE42368.1| hypothetical protein CPAR2_200110 [Candida parapsilosis]
Length = 1746
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDG+N+ + + D ++Y ND + S GIEA + +E+ NV A G V
Sbjct: 1307 VLETDGVNLADVMAVPGV-DSARIYSNDFIEILSVLGIEATRSALYKEILNVIAFDGSYV 1365
Query: 68 DPRHLSLVADYMT 80
+ RH++L+ D MT
Sbjct: 1366 NYRHMALLVDVMT 1378
>gi|241955144|ref|XP_002420293.1| DNA-directed RNA polymerase III subunit, putative [Candida
dubliniensis CD36]
gi|223643634|emb|CAX42517.1| DNA-directed RNA polymerase III subunit, putative [Candida
dubliniensis CD36]
Length = 1448
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 12/76 (15%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
K ++ T+GI V + H+L++N++ GIEAA II+E+ + +G+
Sbjct: 1291 KDVMNTEGI-VGTKTTTNHVLEVNQIL-----------GIEAARGSIIKEIDYTMSNHGM 1338
Query: 66 EVDPRHLSLVADYMTH 81
VDPRH+ L+ D MT+
Sbjct: 1339 SVDPRHIQLLGDVMTY 1354
>gi|68481275|ref|XP_715412.1| hypothetical protein CaO19.3103 [Candida albicans SC5314]
gi|46437034|gb|EAK96387.1| hypothetical protein CaO19.3103 [Candida albicans SC5314]
Length = 1448
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 12/76 (15%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
K ++ T+GI V + H+L++N++ GIEAA II+E+ + +G+
Sbjct: 1291 KDVMNTEGI-VGTKTTTNHVLEVNQIL-----------GIEAARGSIIKEIDYTMSNHGM 1338
Query: 66 EVDPRHLSLVADYMTH 81
VDPRH+ L+ D MT+
Sbjct: 1339 SVDPRHIQLLGDVMTY 1354
>gi|448711916|ref|ZP_21701459.1| DNA-directed RNA polymerase subunit A'' [Halobiforma
nitratireducens JCM 10879]
gi|445791001|gb|EMA41650.1| DNA-directed RNA polymerase subunit A'' [Halobiforma
nitratireducens JCM 10879]
Length = 399
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI-EVDPRHLSLVADYMTHS 82
+D ++ N+IH + GIEAA II E N A G+ +V+ RHL LVAD MT++
Sbjct: 263 VDASRTTCNNIHEIHRNLGIEAAREAIIEETNNTLAEQGLDDVNVRHLMLVADIMTNN 320
>gi|19074431|ref|NP_585937.1| DNA-DIRECTED RNA POLYMERASE III 160 kDa SUBUNIT (LARGEST SUBUNIT)
[Encephalitozoon cuniculi GB-M1]
Length = 1349
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 34 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH-------SEFDL 86
N I + GIEAA II E++ + +GI++DPRH+ L+AD MT+ + F +
Sbjct: 1230 NSITEVEEVLGIEAARAQIIHEIEYTISNHGIKIDPRHIMLLADTMTYRGEVFGITRFGI 1289
Query: 87 IIMVSKSWMLDEVKSTT 103
M + ML + T+
Sbjct: 1290 SKMSRSTLMLASFEQTS 1306
>gi|433592801|ref|YP_007282297.1| DNA-directed RNA polymerase, subunit A'' [Natrinema pellirubrum DSM
15624]
gi|448335246|ref|ZP_21524396.1| DNA-directed RNA polymerase subunit A'' [Natrinema pellirubrum DSM
15624]
gi|433307581|gb|AGB33393.1| DNA-directed RNA polymerase, subunit A'' [Natrinema pellirubrum DSM
15624]
gi|445617627|gb|ELY71221.1| DNA-directed RNA polymerase subunit A'' [Natrinema pellirubrum DSM
15624]
Length = 398
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI-EVDPRHLSLVADYMTH 81
+D ++ N+IH + GIEAA II E N A G+ +V+ RHL LVAD MT+
Sbjct: 263 VDASRTTCNNIHEIHRNLGIEAAREAIIEETNNTLAEQGLDDVNVRHLMLVADMMTN 319
>gi|238881190|gb|EEQ44828.1| DNA-directed RNA polymerase III largest subunit [Candida albicans
WO-1]
Length = 1448
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 12/76 (15%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
K ++ T+GI V + H+L++N++ GIEAA II+E+ + +G+
Sbjct: 1291 KDVMNTEGI-VGTKTTTNHVLEVNQIL-----------GIEAARGSIIKEIDYTMSNHGM 1338
Query: 66 EVDPRHLSLVADYMTH 81
VDPRH+ L+ D MT+
Sbjct: 1339 SVDPRHIQLLGDVMTY 1354
>gi|68481134|ref|XP_715482.1| hypothetical protein CaO19.10615 [Candida albicans SC5314]
gi|46437106|gb|EAK96458.1| hypothetical protein CaO19.10615 [Candida albicans SC5314]
Length = 1448
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 12/76 (15%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
K ++ T+GI V + H+L++N++ GIEAA II+E+ + +G+
Sbjct: 1291 KDVMNTEGI-VGTKTTTNHVLEVNQIL-----------GIEAARGSIIKEIDYTMSNHGM 1338
Query: 66 EVDPRHLSLVADYMTH 81
VDPRH+ L+ D MT+
Sbjct: 1339 SVDPRHIQLLGDVMTY 1354
>gi|389750938|gb|EIM92011.1| beta and beta-prime subunits of DNA dependent RNA-polymerase [Stereum
hirsutum FP-91666 SS1]
Length = 1703
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDG+N+ + +D + Y N + + GIEAA I++E++ V G V
Sbjct: 1323 VLETDGVNLKAV-MCMDGVDFTRTYSNSCVEIFNVLGIEAARAAIMKELRGVIEFDGSYV 1381
Query: 68 DPRHLSLVADYMTH 81
+ RHL+L+ D MT
Sbjct: 1382 NYRHLALLCDLMTQ 1395
>gi|433637475|ref|YP_007283235.1| DNA-directed RNA polymerase, subunit A'' [Halovivax ruber XH-70]
gi|433289279|gb|AGB15102.1| DNA-directed RNA polymerase, subunit A'' [Halovivax ruber XH-70]
Length = 402
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIE-VDPRHLSLVADYMTH 81
+D ++ N+IH + G+EAA +II E KN G++ ++ RHL LVAD MT+
Sbjct: 268 VDASRTTCNNIHEIYRNLGVEAAREIIIEETKNTLVEQGLDNINVRHLMLVADIMTN 324
>gi|429851276|gb|ELA26479.1| DNA-dependent RNA polymerase ii largest [Colletotrichum
gloeosporioides Nara gc5]
Length = 1754
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 15/84 (17%)
Query: 1 METNG---KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVK 57
++T+G + +L DG+ D + Y N + + +GIEAA ++RE+
Sbjct: 1330 LDTSGTALRQVLSVDGV------------DSTRTYTNHLWQVVEVFGIEAARSALVRELT 1377
Query: 58 NVFAVYGIEVDPRHLSLVADYMTH 81
V A G V+ RHL+L+ D MT+
Sbjct: 1378 QVLAFDGSYVNHRHLALLCDVMTY 1401
>gi|448375014|ref|ZP_21558731.1| DNA-directed RNA polymerase subunit A'' [Halovivax asiaticus JCM
14624]
gi|445659475|gb|ELZ12281.1| DNA-directed RNA polymerase subunit A'' [Halovivax asiaticus JCM
14624]
Length = 402
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIE-VDPRHLSLVADYMTH 81
+D ++ N+IH + G+EAA +II E KN G++ ++ RHL LVAD MT+
Sbjct: 268 VDASRTTCNNIHEIYRNLGVEAAREIIIEETKNTLVEQGLDNINVRHLMLVADIMTN 324
>gi|443919745|gb|ELU39821.1| DNA-directed RNA polymerase III largest subunit [Rhizoctonia solani
AG-1 IA]
Length = 679
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 19/105 (18%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
K ++ TDGI + + H++++ ++ GIEAA + II E++ +G+
Sbjct: 552 KEVMNTDGI-IGEKTTSNHIMEVEQVL-----------GIEAARKTIIGEIQYTMQSHGM 599
Query: 66 EVDPRHLSLVADYMTH-------SEFDLIIMVSKSWMLDEVKSTT 103
VDPRH+ L+ D MT+ + F + M ML + TT
Sbjct: 600 NVDPRHIMLLGDVMTYKGQVLGITRFGVAKMKDSVLMLASFEKTT 644
>gi|255513760|gb|EET90025.1| RNA polymerase Rpb1 domain 5 [Candidatus Micrarchaeum acidiphilum
ARMAN-2]
Length = 347
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
+G + T+G N+ I + D ++LY N++ + YG+EAA +I E+K+
Sbjct: 191 DGTFYITTNGSNMPEIINVEGV-DKDRLYSNNLFDVFKVYGVEAARNMIANELKSTIENE 249
Query: 64 GIEVDPRHLSLVADYMTH 81
G V RH+SL+AD MT+
Sbjct: 250 GFTVSFRHVSLLADTMTY 267
>gi|429191197|ref|YP_007176875.1| DNA-directed RNA polymerase, subunit A'''' [Natronobacterium
gregoryi SP2]
gi|448326612|ref|ZP_21515961.1| DNA-directed RNA polymerase subunit A'' [Natronobacterium gregoryi
SP2]
gi|429135415|gb|AFZ72426.1| DNA-directed RNA polymerase, subunit A'''' [Natronobacterium
gregoryi SP2]
gi|445610904|gb|ELY64669.1| DNA-directed RNA polymerase subunit A'' [Natronobacterium gregoryi
SP2]
Length = 401
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI-EVDPRHLSLVADYMTH 81
+D ++ N+IH + GIEAA II E N A G+ +V+ RHL LVAD MT+
Sbjct: 263 VDASRTTCNNIHEIHRNLGIEAAREAIIEETNNTLAEQGLDDVNVRHLMLVADIMTN 319
>gi|328867419|gb|EGG15801.1| RNA polymerase II largest subunit [Dictyostelium fasciculatum]
Length = 1701
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 3 TNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 62
T + +L TDG+N+ + + + D ++ NDI + GIEA +++E++ V +
Sbjct: 1297 TKKEWVLDTDGVNLLEVMSHPDV-DFSRTVSNDIVEIIQVLGIEAVRNALLKELRAVISF 1355
Query: 63 YGIEVDPRHLSLVADYMTH 81
G V+ RHL+++AD MT+
Sbjct: 1356 DGSYVNYRHLAMLADVMTY 1374
>gi|289581818|ref|YP_003480284.1| DNA-directed RNA polymerase subunit A'' [Natrialba magadii ATCC
43099]
gi|289531371|gb|ADD05722.1| DNA-directed RNA polymerase, subunit A'' [Natrialba magadii ATCC
43099]
Length = 399
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI-EVDPRHLSLVADYMTH 81
+D ++ N+IH + GIEAA II E N A G+ +V+ RHL LVAD MT+
Sbjct: 263 VDASRTTCNNIHEIHRNLGIEAAREAIIEETNNTLAEQGLDDVNVRHLMLVADMMTN 319
>gi|448282777|ref|ZP_21474059.1| DNA-directed RNA polymerase subunit A'' [Natrialba magadii ATCC
43099]
gi|445575392|gb|ELY29867.1| DNA-directed RNA polymerase subunit A'' [Natrialba magadii ATCC
43099]
Length = 399
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI-EVDPRHLSLVADYMTH 81
+D ++ N+IH + GIEAA II E N A G+ +V+ RHL LVAD MT+
Sbjct: 263 VDASRTTCNNIHEIHRNLGIEAAREAIIEETNNTLAEQGLDDVNVRHLMLVADMMTN 319
>gi|326431524|gb|EGD77094.1| polymerase II polypeptide A [Salpingoeca sp. ATCC 50818]
Length = 1834
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+++TDG ++ + + H+ D NDI + +GIEAA + + E+ NV G V
Sbjct: 1344 IIETDGSSLAKVLSHPHV-DPENSSTNDIVEVFQVFGIEAARKAVENEIINVVTSGGANV 1402
Query: 68 DPRHLSLVADYMTH 81
+ RHLSL+ D MT+
Sbjct: 1403 NYRHLSLLCDIMTN 1416
>gi|224060165|ref|XP_002300065.1| predicted protein [Populus trichocarpa]
gi|222847323|gb|EEE84870.1| predicted protein [Populus trichocarpa]
Length = 1394
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMT 80
+D K N I + T GIEAA + II E+K +G+ +D RH+ L+AD MT
Sbjct: 1270 VDGRKTKSNHIIEVQETLGIEAARKCIIDEIKGTMESHGMSIDIRHMMLLADVMT 1324
>gi|297619551|ref|YP_003707656.1| DNA-directed RNA polymerase subunit A'' [Methanococcus voltae A3]
gi|297378528|gb|ADI36683.1| DNA-directed RNA polymerase, subunit A'' [Methanococcus voltae A3]
Length = 387
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
+++L ++G N+ + + + D +K N+I + G+EAA II E+ + G+
Sbjct: 236 EYILYSEGSNLKEVFEIEGV-DPSKTTTNNIIEIQDVLGVEAARNAIIYEMAATLSNQGL 294
Query: 66 EVDPRHLSLVADYMT 80
VDPRHL +V+D MT
Sbjct: 295 TVDPRHLMMVSDLMT 309
>gi|448312199|ref|ZP_21501949.1| DNA-directed RNA polymerase subunit A'' [Natronolimnobius
innermongolicus JCM 12255]
gi|445602706|gb|ELY56678.1| DNA-directed RNA polymerase subunit A'' [Natronolimnobius
innermongolicus JCM 12255]
Length = 400
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI-EVDPRHLSLVADYMTH 81
+D ++ N+IH + GIEAA II E N A G+ +V+ RHL LVAD MT+
Sbjct: 263 VDASRTTCNNIHEIHRNLGIEAAREAIIEETNNTLAEQGLDDVNVRHLMLVADMMTN 319
>gi|392512733|emb|CAD25541.2| DNA-DIRECTED RNA POLYMERASE III 160 kDa SUBUNIT (LARGEST SUBUNIT)
[Encephalitozoon cuniculi GB-M1]
Length = 1316
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 34 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH-------SEFDL 86
N I + GIEAA II E++ + +GI++DPRH+ L+AD MT+ + F +
Sbjct: 1197 NSITEVEEVLGIEAARAQIIHEIEYTISNHGIKIDPRHIMLLADTMTYRGEVFGITRFGI 1256
Query: 87 IIMVSKSWMLDEVKSTT 103
M + ML + T+
Sbjct: 1257 SKMSRSTLMLASFEQTS 1273
>gi|308480567|ref|XP_003102490.1| hypothetical protein CRE_04012 [Caenorhabditis remanei]
gi|308261222|gb|EFP05175.1| hypothetical protein CRE_04012 [Caenorhabditis remanei]
Length = 118
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/25 (80%), Positives = 21/25 (84%)
Query: 56 VKNVFAVYGIEVDPRHLSLVADYMT 80
+ NVFAVYGIEV RHLSL ADYMT
Sbjct: 1 MNNVFAVYGIEVSKRHLSLTADYMT 25
>gi|149235017|ref|XP_001523387.1| DNA-directed RNA polymerase II largest subunit [Lodderomyces
elongisporus NRRL YB-4239]
gi|146452796|gb|EDK47052.1| DNA-directed RNA polymerase II largest subunit [Lodderomyces
elongisporus NRRL YB-4239]
Length = 1745
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDG+N+ + + D + Y ND + S GIEA + +E+ NV A G V
Sbjct: 1301 VLETDGVNLADVMAVPGV-DSARTYSNDFIEILSVLGIEATRSALFKEILNVIAFDGSYV 1359
Query: 68 DPRHLSLVADYMT 80
+ RH++L+ D MT
Sbjct: 1360 NYRHMALLVDVMT 1372
>gi|448303810|ref|ZP_21493756.1| DNA-directed RNA polymerase subunit A'' [Natronorubrum
sulfidifaciens JCM 14089]
gi|445592437|gb|ELY46624.1| DNA-directed RNA polymerase subunit A'' [Natronorubrum
sulfidifaciens JCM 14089]
Length = 399
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI-EVDPRHLSLVADYMTH 81
+D ++ N+IH + GIEAA II E N A G+ +V+ RHL LVAD MT+
Sbjct: 262 VDASRTTCNNIHEIHRNLGIEAAREAIIEETNNTLAEQGLDDVNVRHLMLVADMMTN 318
>gi|424812809|ref|ZP_18238049.1| DNA-directed RNA polymerase, beta' subunit/160 kD subunit
[Candidatus Nanosalinarum sp. J07AB56]
gi|339757031|gb|EGQ40614.1| DNA-directed RNA polymerase, beta' subunit/160 kD subunit
[Candidatus Nanosalinarum sp. J07AB56]
Length = 368
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 9/145 (6%)
Query: 2 ETNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
E +G+ L+T G ++ + + D + ND+ + S GIE + II E K
Sbjct: 216 EVDGEWELRTAGTSLRKTMRIDEV-DETRTISNDLFEVESVIGIEGLRQRIIEETKATLE 274
Query: 62 VYGIEVDPRHLSLVADYMT-HSEFDLIIMVSKSWMLDEVKSTTARSVTPACEPNSHHDVK 120
GI +D RH+ L+AD MT E + ++ ++ E S ARS A E H +
Sbjct: 275 EQGIGIDDRHIMLLADMMTKEGELN---GCTRYGIVGEKDSILARS---AYEETKKH-LS 327
Query: 121 KIEFKKQNKILPLVLQNSLTGSSYP 145
+ + L V++N + G S P
Sbjct: 328 QASLHGEVDDLEGVVENIVLGQSVP 352
>gi|296827068|ref|XP_002851111.1| DNA-directed RNA polymerase III largest subunit [Arthroderma otae CBS
113480]
gi|238838665|gb|EEQ28327.1| DNA-directed RNA polymerase III largest subunit [Arthroderma otae CBS
113480]
Length = 1443
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
+D ++ N I M GIEAA II E+ +V + G+ +DPRH+ L+AD MT+
Sbjct: 1282 VDGHRTRTNHIMEMRDVLGIEAARTTIIDEISSVMS--GMSIDPRHMQLLADVMTY 1335
>gi|242073562|ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [Sorghum bicolor]
gi|241937900|gb|EES11045.1| hypothetical protein SORBIDRAFT_06g021120 [Sorghum bicolor]
Length = 1391
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH---- 81
+D K N I T GIEAA R II E++ +G+ +D RH+ L+AD MT+
Sbjct: 1251 VDATKTKSNHIMETNQTLGIEAARRSIIDEIQYTMKSHGMNIDRRHMMLLADLMTYKGEI 1310
Query: 82 ---SEFDLIIMVSKSWMLDEVKSTT 103
+ + + M S ML + T+
Sbjct: 1311 LGITRYGIAKMKSSVLMLASFEKTS 1335
>gi|316997019|dbj|BAJ52637.1| RNA polymerase II largest subunit [Monosiga ovata]
Length = 1289
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG + + RH+ D + ND+ S GIEA + + E+KNV G V
Sbjct: 848 LLETDGSALLDVMCNRHV-DAYRTMTNDVVECFSVLGIEAGRQCVENEIKNVLDNSGAYV 906
Query: 68 DPRHLSLVADYMTHSEFDLII 88
+ RHLSL+ + MT + + I
Sbjct: 907 NYRHLSLLCNIMTSKGYLMAI 927
>gi|222478543|ref|YP_002564780.1| DNA-directed RNA polymerase subunit A'' [Halorubrum lacusprofundi
ATCC 49239]
gi|222451445|gb|ACM55710.1| DNA-directed RNA polymerase, subunit A'' [Halorubrum lacusprofundi
ATCC 49239]
Length = 404
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI-EVDPRHLSLVADYM-THSE 83
+D ++ N+IH + G+EAA II E KN G+ +V+ RHL LVAD M T+ E
Sbjct: 272 VDASRTTCNNIHEIYRNLGVEAARETIIDETKNTLEEQGLDDVNVRHLMLVADMMTTNGE 331
Query: 84 FDLIIMVSKSWMLDEVKSTTARSVT 108
D I S D V + A VT
Sbjct: 332 IDSIGRHGISGSKDSVLARAAFEVT 356
>gi|448363835|ref|ZP_21552430.1| DNA-directed RNA polymerase subunit A'' [Natrialba asiatica DSM
12278]
gi|445645419|gb|ELY98423.1| DNA-directed RNA polymerase subunit A'' [Natrialba asiatica DSM
12278]
Length = 399
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI-EVDPRHLSLVADYMTH 81
+D ++ N+IH + GIEAA II E N A G+ +V+ RHL LVAD MT+
Sbjct: 263 VDASRTTCNNIHEIHRNLGIEAAREAIIEETNNTLAEQGLDDVNVRHLMLVADIMTN 319
>gi|336378579|gb|EGO19737.1| DNA-directed RNA polymerase II, subunit 1 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1744
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDG+N+ + + D + Y N + + GIEAA I++E++ V V
Sbjct: 1323 VLETDGVNLKTVMCIDGV-DFRRTYSNSCVEVFNVLGIEAARAAIMKELRGVIEFESSYV 1381
Query: 68 DPRHLSLVADYMTH 81
+ RHL+L+ D MTH
Sbjct: 1382 NYRHLALLCDLMTH 1395
>gi|157841364|gb|ABV83136.1| RNA polymerase 2 [Rhabditis sp. SB347]
Length = 621
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG + + RH+ D + NDI + GIEA + I +E+ NV + G V
Sbjct: 542 LLETDGTALLKVLSERHV-DAVRTSSNDICEIFEVLGIEAVRKSIEKEMNNVISFDGSYV 600
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 601 NYRHLALLCDVMT 613
>gi|156380969|ref|XP_001632039.1| predicted protein [Nematostella vectensis]
gi|156219089|gb|EDO39976.1| predicted protein [Nematostella vectensis]
Length = 1929
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG+++ + R + D + NDI + S GIEA + + RE+ +V + G V
Sbjct: 1330 LLETDGVSLMRVLSERDV-DPVRTTSNDICEIFSVLGIEAVRKAVEREMDHVISFDGSYV 1388
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1389 NYRHLALLCDIMT 1401
>gi|336364350|gb|EGN92710.1| hypothetical protein SERLA73DRAFT_98944 [Serpula lacrymans var.
lacrymans S7.3]
Length = 1741
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDG+N+ + + D + Y N + + GIEAA I++E++ V V
Sbjct: 1320 VLETDGVNLKTVMCIDGV-DFRRTYSNSCVEVFNVLGIEAARAAIMKELRGVIEFESSYV 1378
Query: 68 DPRHLSLVADYMTH 81
+ RHL+L+ D MTH
Sbjct: 1379 NYRHLALLCDLMTH 1392
>gi|50346876|gb|AAT75145.1| RNA polymerase 2 [Rhabditella axei]
Length = 621
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG + + +H+ D + NDI + GIEA + I RE+ NV + G V
Sbjct: 542 LLETDGTALLKVLSEQHI-DPARTTSNDICEIFEVLGIEAVRKSIEREMNNVISFDGSYV 600
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 601 NYRHLALLCDVMT 613
>gi|393794932|ref|ZP_10378296.1| bifunctional DNA-directed RNA polymerase subunit A'/A'' [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 1263
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 7/138 (5%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+++T G N+ + + + D + N++ +A T GIEA+ +I E+ N G+EV
Sbjct: 1117 VIQTTGSNIAKVLEVSGI-DKKNVRTNNVFEIAGTLGIEASRNALINELNNTLEDQGLEV 1175
Query: 68 DPRHLSLVADYMTHSEFDLIIMVSKSWMLDEVKSTTARSVTPACEPNSHHDVKKIEFKKQ 127
D R++ LV+D M + + + + + S AR+ P H E ++
Sbjct: 1176 DDRYIMLVSDLMCSRGY--MQQIGRHGIAGTKDSVLARAAFEITVPTIAHAALAGEVEQ- 1232
Query: 128 NKILPLVLQNSLTGSSYP 145
L + +N + GS P
Sbjct: 1233 ---LKGITENVIVGSIIP 1247
>gi|329765754|ref|ZP_08257323.1| DNA-directed RNA polymerase subunit A' [Candidatus Nitrosoarchaeum
limnia SFB1]
gi|329137820|gb|EGG42087.1| DNA-directed RNA polymerase subunit A' [Candidatus Nitrosoarchaeum
limnia SFB1]
Length = 1263
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 7/138 (5%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+++T G N+ + + + D + N++ +A T GIEA+ +I E+ N G+EV
Sbjct: 1117 VIQTTGSNIAKVLEVSGI-DKKNVRTNNVFEIAGTLGIEASRNALINELNNTLEDQGLEV 1175
Query: 68 DPRHLSLVADYMTHSEFDLIIMVSKSWMLDEVKSTTARSVTPACEPNSHHDVKKIEFKKQ 127
D R++ LV+D M + + + + + S AR+ P H E ++
Sbjct: 1176 DDRYIMLVSDLMCSRGY--MQQIGRHGIAGTKDSVLARAAFEITVPTIAHAALAGEVEQ- 1232
Query: 128 NKILPLVLQNSLTGSSYP 145
L + +N + GS P
Sbjct: 1233 ---LKGITENVIVGSIIP 1247
>gi|20090126|ref|NP_616201.1| DNA-directed RNA polymerase subunit A'' [Methanosarcina acetivorans
C2A]
gi|22096090|sp|Q8TRB8.1|RPOA2_METAC RecName: Full=DNA-directed RNA polymerase subunit A''
gi|19915106|gb|AAM04681.1| DNA-directed RNA polymerase, subunit A [Methanosarcina acetivorans
C2A]
Length = 397
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
++ L T+G + + Q+ + D + N+I+ + GIEAA II+E + G+
Sbjct: 239 EYTLYTEGSALRDVLQFEGV-DKTRTSTNNINEIYEVLGIEAARNAIIKEATDTLREQGL 297
Query: 66 EVDPRHLSLVADYMT 80
VD RH+ LVAD MT
Sbjct: 298 TVDIRHIMLVADLMT 312
>gi|308229946|gb|ADO24380.1| RNA polymerase II large subunit, partial [Drosophila brachynephros]
Length = 1847
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
G+ LL+TDG ++ + R + D + NDI + GIEA + + +E+ V YG
Sbjct: 1305 GEWLLETDGTSMMKVLSERDV-DPIRTSSNDICEIFQVLGIEAVRKSVEKEMDAVLHSYG 1363
Query: 65 IEVDPRHLSLVADYMT 80
+ V+ RHL+L+ D MT
Sbjct: 1364 LYVNYRHLALLCDVMT 1379
>gi|448366552|ref|ZP_21554675.1| DNA-directed RNA polymerase subunit A'' [Natrialba aegyptia DSM
13077]
gi|445654007|gb|ELZ06863.1| DNA-directed RNA polymerase subunit A'' [Natrialba aegyptia DSM
13077]
Length = 399
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI-EVDPRHLSLVADYMTH 81
+D ++ N+IH + GIEAA II E N A G+ +V+ RHL LVAD MT+
Sbjct: 263 VDASRTTCNNIHEIHRNLGIEAAREAIIEETNNTLAEQGLDDVNVRHLMLVADIMTN 319
>gi|448350442|ref|ZP_21539255.1| DNA-directed RNA polymerase subunit A'' [Natrialba taiwanensis DSM
12281]
gi|445636712|gb|ELY89872.1| DNA-directed RNA polymerase subunit A'' [Natrialba taiwanensis DSM
12281]
Length = 399
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI-EVDPRHLSLVADYMTH 81
+D ++ N+IH + GIEAA II E N A G+ +V+ RHL LVAD MT+
Sbjct: 263 VDASRTTCNNIHEIHRNLGIEAAREAIIEETNNTLAEQGLDDVNVRHLMLVADIMTN 319
>gi|348676924|gb|EGZ16741.1| RNA polymerase II large subunit [Phytophthora sojae]
Length = 1852
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L TDG N+ + Y + D + NDI + GIEA R ++ E++ V + G V
Sbjct: 1371 MLDTDGTNLLDVMCYPQV-DATRTISNDIVEIIQVLGIEAVRRALLNEIRQVISFDGAYV 1429
Query: 68 DPRHLSLVADYMT 80
+ RHL+ + D MT
Sbjct: 1430 NYRHLACLCDVMT 1442
>gi|430813213|emb|CCJ29412.1| unnamed protein product [Pneumocystis jirovecii]
Length = 1390
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 8/110 (7%)
Query: 1 METNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 60
++ GK+ L +G + + ++ K N + M GIEAA II+E+
Sbjct: 1215 IDEKGKNTLLVEGYGLRDVINTDGVVG-TKTSTNHVMEMKQVLGIEAARASIIKEIDITM 1273
Query: 61 AVYGIEVDPRHLSLVADYMTH-------SEFDLIIMVSKSWMLDEVKSTT 103
+ +G+ +DPRH+ L+ D MT+ + F + M + ML + TT
Sbjct: 1274 SSHGMNIDPRHVMLLGDVMTYRGEILGITRFGVAKMKNSVLMLASFEKTT 1323
>gi|157841392|gb|ABV83150.1| RNA polymerase 2 [Brevibucca saprophaga]
Length = 386
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDG + + RH+ D + NDI + GIEA + I RE+ NV + G V
Sbjct: 292 ILETDGTALLKVLSERHV-DPVRTTSNDICEIFDVLGIEAVRKSIEREMDNVISFDGSYV 350
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 351 NYRHLALLCDVMT 363
>gi|168009054|ref|XP_001757221.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691719|gb|EDQ78080.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1397
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 19/108 (17%)
Query: 3 TNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 62
TN K ++ G+N +++ H+++ + T GIEAA VII E++
Sbjct: 1246 TNLKAVMGISGVN-GKLTKSNHVIEAEQ-----------TLGIEAARNVIIDEIQYTMGS 1293
Query: 63 YGIEVDPRHLSLVADYMTH-------SEFDLIIMVSKSWMLDEVKSTT 103
+G+ +D RH+ L+AD MT+ + F + M ML + TT
Sbjct: 1294 HGMTIDARHMMLLADVMTYKGEVLGITRFGIAKMKDSVLMLASFEKTT 1341
>gi|392569146|gb|EIW62320.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Trametes versicolor FP-101664 SS1]
Length = 1403
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 34 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH-------SEFDL 86
N + +A GIEAA R II E++ +G+ +DPRH+ L+ D M++ + F +
Sbjct: 1270 NHVIEIAQVLGIEAARRTIINEIQYTMQSHGMSIDPRHVMLLGDVMSYKGEVLGITRFGV 1329
Query: 87 IIMVSKSWMLDEVKSTT 103
M ML + TT
Sbjct: 1330 AKMKDSVLMLASFEKTT 1346
>gi|448316024|ref|ZP_21505662.1| DNA-directed RNA polymerase subunit A'' [Natronococcus jeotgali DSM
18795]
gi|445610370|gb|ELY64144.1| DNA-directed RNA polymerase subunit A'' [Natronococcus jeotgali DSM
18795]
Length = 398
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI-EVDPRHLSLVADYMTH 81
+D ++ N+IH + GIEAA II E N A G+ +V+ RHL LVAD MT+
Sbjct: 263 VDASRSTCNNIHEIHRNLGIEAAREAIIEETNNTLAEQGLDDVNVRHLMLVADMMTN 319
>gi|403215001|emb|CCK69501.1| hypothetical protein KNAG_0C03970 [Kazachstania naganishii CBS 8797]
Length = 1721
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L++DG+N+ + Q + D ++Y N + GIEA + +EV NV A G V
Sbjct: 1304 VLESDGVNLAEVMQVPGV-DATRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYV 1362
Query: 68 DPRHLSLVADYMT 80
+ RH++L+ D MT
Sbjct: 1363 NYRHMALLVDVMT 1375
>gi|448524734|ref|XP_003869005.1| Rpo21 protein [Candida orthopsilosis Co 90-125]
gi|380353358|emb|CCG22868.1| Rpo21 protein [Candida orthopsilosis]
Length = 1732
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDG+N+ + + D + Y ND + S GIEA + +E+ NV A G V
Sbjct: 1307 VLETDGVNLADVMAVPGV-DSTRTYSNDFIEILSVLGIEATRSALYKEILNVIAFDGSYV 1365
Query: 68 DPRHLSLVADYMT 80
+ RH++L+ D MT
Sbjct: 1366 NYRHMALLVDVMT 1378
>gi|336121470|ref|YP_004576245.1| DNA-directed RNA polymerase subunit A'' [Methanothermococcus
okinawensis IH1]
gi|334855991|gb|AEH06467.1| DNA-directed RNA polymerase, subunit A'' [Methanothermococcus
okinawensis IH1]
Length = 395
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 2 ETNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
E +++L ++G N+ + + + D + N+I + GIEAA II E+ +
Sbjct: 214 EGTEEYILYSEGSNLKEVFEIEGV-DTTRTTTNNILEIQDVLGIEAARNAIIDEINATLS 272
Query: 62 VYGIEVDPRHLSLVADYMT 80
G+ VD RHL LVAD MT
Sbjct: 273 QQGLTVDIRHLMLVADIMT 291
>gi|118576747|ref|YP_876490.1| DNA-directed RNA polymerase, beta' subunit/160 kD subunit
[Cenarchaeum symbiosum A]
gi|118195268|gb|ABK78186.1| DNA-directed RNA polymerase, beta' subunit/160 kD subunit
[Cenarchaeum symbiosum A]
Length = 1260
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSEFD 85
+D ++ N++ +A T GIEAA +I E+++ G+EVD R++ LV+D M +
Sbjct: 1131 IDKRQVRTNNVFEIAGTLGIEAARNALINELRSTLEDQGLEVDIRYIMLVSDLMCSRGY- 1189
Query: 86 LIIMVSKSWMLDEVKSTTARSVTPACEPNSHHDVKKIEFKKQNKILPLVLQNSLTGSSYP 145
+ + + + S AR+ P H E + L V +N + GS+ P
Sbjct: 1190 -MQQIGRHGIAGTKDSVLARAAFEITVPTIAHAALSGEVEH----LRGVTENVIVGSNIP 1244
>gi|448476272|ref|ZP_21603436.1| DNA-directed RNA polymerase subunit A'' [Halorubrum aidingense JCM
13560]
gi|445815821|gb|EMA65740.1| DNA-directed RNA polymerase subunit A'' [Halorubrum aidingense JCM
13560]
Length = 403
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI-EVDPRHLSLVADYMT-HSE 83
+D ++ N+IH + G+EAA II E KN G+ +V+ RHL LVAD MT + E
Sbjct: 271 VDASRTTCNNIHEIYRNLGVEAARETIIDETKNTLEEQGLDDVNVRHLMLVADIMTNNGE 330
Query: 84 FDLIIMVSKSWMLDEVKSTTARSVT 108
D I S D V + A VT
Sbjct: 331 IDSIGRHGISGSKDSVLARAAFEVT 355
>gi|435845620|ref|YP_007307870.1| DNA-directed RNA polymerase, subunit A' [Natronococcus occultus
SP4]
gi|433671888|gb|AGB36080.1| DNA-directed RNA polymerase, subunit A' [Natronococcus occultus
SP4]
Length = 398
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI-EVDPRHLSLVADYMTH 81
+D ++ N+IH + GIEAA II E N A G+ +V+ RHL LVAD MT+
Sbjct: 263 VDASRSTCNNIHEIHRNLGIEAAREAIIEETNNTLAEQGLDDVNVRHLMLVADMMTN 319
>gi|255076723|ref|XP_002502032.1| predicted protein [Micromonas sp. RCC299]
gi|226517297|gb|ACO63290.1| predicted protein [Micromonas sp. RCC299]
Length = 1479
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
GK+ L +G N+ + + + N + T GIEAA II+E+ + +
Sbjct: 1240 QGKYNLVVEGTNLQAVMGVEGVKGTHT-TTNHVMEAERTLGIEAARSCIIKEINDTMKAH 1298
Query: 64 GIEVDPRHLSLVADYMTH-------SEFDLIIMVSKSWMLDEVKSTT 103
G+ +D RH L+AD MT+ + F + M ML + TT
Sbjct: 1299 GMSIDARHSMLLADVMTYKGEVLGITRFGMAKMKDSVLMLASFEKTT 1345
>gi|290999395|ref|XP_002682265.1| predicted protein [Naegleria gruberi]
gi|284095892|gb|EFC49521.1| predicted protein [Naegleria gruberi]
Length = 1426
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 32/47 (68%)
Query: 34 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMT 80
N+I ++ T GIE+A ++I+ E+K YG+ +D RH+ L+AD MT
Sbjct: 1285 NNIIEISQTLGIESARQLIMDEIKYTTGSYGMNIDTRHIKLLADIMT 1331
>gi|336373147|gb|EGO01485.1| hypothetical protein SERLA73DRAFT_103293 [Serpula lacrymans var.
lacrymans S7.3]
Length = 1400
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 34 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH-------SEFDL 86
N + +A GIEAA R II E++ +G+ +DPRH+ L+ D M++ + F +
Sbjct: 1267 NHVIEVAQVLGIEAARRTIINEIQYTMQSHGMSIDPRHVMLLGDVMSYKGEVLGITRFGV 1326
Query: 87 IIMVSKSWMLDEVKSTT 103
M ML + TT
Sbjct: 1327 AKMKDSVLMLASFEKTT 1343
>gi|157841480|gb|ABV83206.1| RNA polymerase 2 [Pellioditis mediterranea]
Length = 618
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG + + +H+ D + NDI + GIEA + I RE+ NV + G V
Sbjct: 539 LLETDGTALLKVLSEQHI-DPIRTSSNDICEIFEVLGIEAVRKAIEREMNNVISFDGSYV 597
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 598 NYRHLALLCDVMT 610
>gi|336386001|gb|EGO27147.1| hypothetical protein SERLADRAFT_446372 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1403
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 34 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH-------SEFDL 86
N + +A GIEAA R II E++ +G+ +DPRH+ L+ D M++ + F +
Sbjct: 1270 NHVIEVAQVLGIEAARRTIINEIQYTMQSHGMSIDPRHVMLLGDVMSYKGEVLGITRFGV 1329
Query: 87 IIMVSKSWMLDEVKSTT 103
M ML + TT
Sbjct: 1330 AKMKDSVLMLASFEKTT 1346
>gi|157841420|gb|ABV83169.1| RNA polymerase 2 [Phasmarhabditis sp. EM434]
Length = 204
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDG + + RH+ D + NDI + GIEA + I RE+ NV + G V
Sbjct: 125 ILETDGTALLKVLSERHI-DPIRTTSNDICEIFEVLGIEAVRKSIEREMNNVISFDGSYV 183
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 184 NYRHLALLCDVMT 196
>gi|403375855|gb|EJY87901.1| RNA polymerase III [Oxytricha trifallax]
Length = 1365
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH---- 81
+D N + GIEAA + II E++ +G+ +DPRH+ L+AD MT
Sbjct: 1207 IDFRSTKSNHVIETEQVLGIEAARQTIINEIQYTMQSHGMNIDPRHIQLLADIMTFKGQV 1266
Query: 82 ---SEFDLIIMVSKSWMLDEVKSTT 103
+ F + M + + ML + TT
Sbjct: 1267 LGITRFGVSKMKNSTLMLASFEMTT 1291
>gi|366998165|ref|XP_003683819.1| hypothetical protein TPHA_0A03070 [Tetrapisispora phaffii CBS 4417]
gi|357522114|emb|CCE61385.1| hypothetical protein TPHA_0A03070 [Tetrapisispora phaffii CBS 4417]
Length = 1719
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDG+N+ + + D +++Y N + GIEA + REV NV A G V
Sbjct: 1305 VLETDGVNLMEVMTVPGV-DGSRIYTNSFIDITEVLGIEAGRAALYREVYNVIASDGSYV 1363
Query: 68 DPRHLSLVADYMT 80
+ RH++L+ D MT
Sbjct: 1364 NYRHMALLVDVMT 1376
>gi|391335740|ref|XP_003742247.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Metaseiulus occidentalis]
Length = 1842
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + Y NDI + S GIEA + + +E+ +V + G V
Sbjct: 1329 LLETDGTSLMRVLSERDV-DPVRTYSNDIIEVFSVLGIEAVRKAVEKEMNHVISFDGSYV 1387
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1388 NYRHLALLCDVMT 1400
>gi|427777531|gb|JAA54217.1| Putative rna polymerase i large subunit [Rhipicephalus pulchellus]
Length = 1941
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + Y NDI + + GIEA + + +E+ +V + G V
Sbjct: 1332 LLETDGTSLMRVLSERDV-DPVRTYSNDICEIFAVLGIEAVRKAVEKEMNHVISFDGSYV 1390
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1391 NYRHLALLCDVMT 1403
>gi|115459150|ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group]
gi|38346223|emb|CAE02045.2| OJ990528_30.3 [Oryza sativa Japonica Group]
gi|38347455|emb|CAD41360.2| OSJNBa0076N16.24 [Oryza sativa Japonica Group]
gi|113564746|dbj|BAF15089.1| Os04g0492300 [Oryza sativa Japonica Group]
gi|116310339|emb|CAH67354.1| OSIGBa0130B08.14 [Oryza sativa Indica Group]
gi|116310740|emb|CAH67535.1| H0425E08.3 [Oryza sativa Indica Group]
gi|215768005|dbj|BAH00234.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218195112|gb|EEC77539.1| hypothetical protein OsI_16437 [Oryza sativa Indica Group]
Length = 1383
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
+D K N I + T GIEAA R II E++ +G+ +D RH+ L+AD MT+
Sbjct: 1243 VDAMKTKSNHIMEVNRTLGIEAARRSIIDEIQYTMKSHGMNIDSRHMMLLADLMTY 1298
>gi|452208507|ref|YP_007488629.1| DNA-directed RNA polymerase subunit A'' (subunit C) [Natronomonas
moolapensis 8.8.11]
gi|452084607|emb|CCQ37954.1| DNA-directed RNA polymerase subunit A'' (subunit C) [Natronomonas
moolapensis 8.8.11]
Length = 408
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
+ +L T+G N+ + + D ++ N+IH + + GIEAA II E N G+
Sbjct: 253 EFILYTEGSNLKKVLDIEGV-DASRTTCNNIHEIHNNLGIEAAREAIIEETMNTLEEQGL 311
Query: 66 -EVDPRHLSLVADYMTHS 82
+V+ RHL LVAD MT++
Sbjct: 312 DDVNIRHLMLVADIMTNT 329
>gi|241301792|ref|XP_002407502.1| DNA-directed RNA polymerase II largest subunit, putative [Ixodes
scapularis]
gi|215497181|gb|EEC06675.1| DNA-directed RNA polymerase II largest subunit, putative [Ixodes
scapularis]
Length = 1937
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + Y NDI + + GIEA + + +E+ +V + G V
Sbjct: 1335 LLETDGTSLMRVLSERDV-DPVRTYSNDICEIFAVLGIEAVRKAVEKEMNHVISFDGSYV 1393
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1394 NYRHLALLCDVMT 1406
>gi|391332786|ref|XP_003740810.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Metaseiulus occidentalis]
Length = 1851
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG ++ + R + D + Y NDI + S GIEA + + +E+ +V + G V
Sbjct: 1330 LLETDGTSLMRVLSERDV-DPVRTYSNDIIEVFSVLGIEAVRKAVEKEMNHVISFDGSYV 1388
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1389 NYRHLALLCDVMT 1401
>gi|340924320|gb|EGS19223.1| hypothetical protein CTHT_0058480 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1756
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 68
L T G + + Q + D + ND++ + +GIEAA +++E+ V A G V+
Sbjct: 1333 LDTQGTALREVLQIEGV-DTRRTSTNDLYQIVDVFGIEAARAALLQELTQVLAFDGSYVN 1391
Query: 69 PRHLSLVADYMTH 81
RHL+L+ D MT+
Sbjct: 1392 HRHLALLVDVMTY 1404
>gi|213556958|gb|ACJ53770.1| RNA polymerase II [Plasmodium gallinaceum]
Length = 2200
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L TDG N+ I L+D K NDI + GIEA R +++E++ V + V
Sbjct: 1712 VLDTDGCNLENIF-CAPLVDYKKTISNDIVEIFEVLGIEAVRRALLKELRTVISFDSSYV 1770
Query: 68 DPRHLSLVADYMTHSEF 84
+ RHLS++ D MT +
Sbjct: 1771 NYRHLSILCDVMTQKGY 1787
>gi|222629113|gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japonica Group]
Length = 1321
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
+D K N I + T GIEAA R II E++ +G+ +D RH+ L+AD MT+
Sbjct: 1181 VDAMKTKSNHIMEVNRTLGIEAARRSIIDEIQYTMKSHGMNIDSRHMMLLADLMTY 1236
>gi|412989108|emb|CCO15699.1| DNA-directed RNA polymerase III largest subunit [Bathycoccus
prasinos]
Length = 1499
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 15/109 (13%)
Query: 10 KTDGINVNYISQYRHLLDL--------NKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
K D + N I + +LLD+ + N I + GIEAA +I+E+ +
Sbjct: 1284 KDDKDSFNLIVEGTNLLDVMSIDGVVGEETTTNHIMEAERSLGIEAARSCVIKEINDTMK 1343
Query: 62 VYGIEVDPRHLSLVADYMTH-------SEFDLIIMVSKSWMLDEVKSTT 103
+G+ +D RH L+AD MT+ + F + M ML + TT
Sbjct: 1344 AHGMSIDSRHSMLLADVMTYKGEVLGITRFGMAKMKESVLMLASFEKTT 1392
>gi|320166366|gb|EFW43265.1| polymerase II polypeptide A [Capsaspora owczarzaki ATCC 30864]
Length = 1792
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDG ++ ++ + +D+ + NDI + G+EA + + +E+ V+++YGI +
Sbjct: 1358 VLETDGSSL-LLALSQPNVDVTRTVSNDIVEIMRVLGVEAVRQSLFKEMHAVYSLYGIYI 1416
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1417 NYRHLALLCDVMT 1429
>gi|325185155|emb|CCA19646.1| DNAdirected RNA polymerase III largest subunit puta [Albugo laibachii
Nc14]
gi|325188545|emb|CCA23078.1| RNA polymerase III putative [Albugo laibachii Nc14]
Length = 1543
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 34 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH-------SEFDL 86
N I + T GIEAA +I EV + + YGI +D RHL L++D MT + F +
Sbjct: 1409 NHIIEVEKTLGIEAARELISSEVSYIMSAYGIGIDRRHLMLLSDIMTFKGEVLGITRFGI 1468
Query: 87 IIMVSKSWMLDEVKSTT 103
M ML + TT
Sbjct: 1469 AKMKESVLMLASFEKTT 1485
>gi|154300910|ref|XP_001550869.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
Length = 1468
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH-SEF 84
+D K+ N + M GIEAA I E+ V A +++DPRH+ L+AD MT+ E
Sbjct: 1311 VDGTKVKSNSVMEMRDVLGIEAARSTIANEIATVMA--DMDIDPRHMQLLADVMTYKGEV 1368
Query: 85 DLIIMVSKSWMLDEVKSTTARSVTP 109
I S M D V + TP
Sbjct: 1369 LGITRFGLSKMRDSVLQLASFEKTP 1393
>gi|347831184|emb|CCD46881.1| similar to DNA-directed RNA polymerase iii largest subunit
[Botryotinia fuckeliana]
Length = 1442
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH-SEF 84
+D K+ N + M GIEAA I E+ V A +++DPRH+ L+AD MT+ E
Sbjct: 1285 VDGTKVKSNSVMEMRDVLGIEAARSTIANEIATVMA--DMDIDPRHMQLLADVMTYKGEV 1342
Query: 85 DLIIMVSKSWMLDEVKSTTARSVTP 109
I S M D V + TP
Sbjct: 1343 LGITRFGLSKMRDSVLQLASFEKTP 1367
>gi|301090036|ref|XP_002895253.1| DNA-directed RNA polymerase II largest subunit [Phytophthora
infestans T30-4]
gi|262101000|gb|EEY59052.1| DNA-directed RNA polymerase II largest subunit [Phytophthora
infestans T30-4]
Length = 1858
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L TDG N+ + Y + D + NDI + GIEA R ++ E++ V + G V
Sbjct: 1371 MLDTDGTNLLDVMCYPQV-DSTRTISNDIVEIIQVLGIEAVRRALLNEIRQVISFDGAYV 1429
Query: 68 DPRHLSLVADYMT 80
+ RHL+ + D MT
Sbjct: 1430 NYRHLACLCDVMT 1442
>gi|157873478|ref|XP_001685248.1| RNA polymerase ii largest subunit [Leishmania major strain Friedlin]
gi|68128319|emb|CAJ08467.1| RNA polymerase ii largest subunit [Leishmania major strain Friedlin]
Length = 1662
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 52/94 (55%), Gaps = 8/94 (8%)
Query: 8 LLKTDGINVNYI------SQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
++ T+G + I S+ ++++D +K N I + + GIEAA R ++ E++ +
Sbjct: 1297 MVDTEGTALQRIFVGVVNSEGKNIIDFSKTSSNKIPEVVTVLGIEAARRKLLSELREAYL 1356
Query: 62 VYGIEVDPRHLSLVADYMTHSEFDLIIMVSKSWM 95
YG+ ++ RH +++ D M + ++ VS++ +
Sbjct: 1357 AYGLNINYRHYTILVDTMCQRGY--LMAVSRTGI 1388
>gi|3169691|gb|AAC17924.1| RNA polymerase II largest subunit, partial [Pyropia yezoensis]
Length = 1685
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 8 LLKTDGINVNYISQYRHL-LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIE 66
LL+TDG VN+I+ H +D + NDI GIEA ++ E++ V + G
Sbjct: 1287 LLETDG--VNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAY 1344
Query: 67 VDPRHLSLVADYMT 80
V+ RHLS++ D MT
Sbjct: 1345 VNYRHLSVLVDVMT 1358
>gi|348676845|gb|EGZ16662.1| hypothetical protein PHYSODRAFT_500633 [Phytophthora sojae]
Length = 1532
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 34 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH-------SEFDL 86
N I + T GIEAA +I EV + + YGI +D RHL L++D MT + F +
Sbjct: 1399 NHIIEVEKTLGIEAARELISSEVNYIMSAYGIGIDRRHLMLLSDIMTFKGEVLGITRFGI 1458
Query: 87 IIMVSKSWMLDEVKSTT 103
M ML + TT
Sbjct: 1459 AKMKESVLMLASFEKTT 1475
>gi|401426590|ref|XP_003877779.1| RNA polymerase ii largest subunit [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322494025|emb|CBZ29319.1| RNA polymerase ii largest subunit [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 1662
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 52/94 (55%), Gaps = 8/94 (8%)
Query: 8 LLKTDGINVNYI------SQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
++ T+G + I S+ ++++D +K N I + + GIEAA R ++ E++ +
Sbjct: 1297 MVDTEGTALQRIFVGVVNSEGKNIIDFSKTSSNKIPEVVTVLGIEAARRKLLSELREAYL 1356
Query: 62 VYGIEVDPRHLSLVADYMTHSEFDLIIMVSKSWM 95
YG+ ++ RH +++ D M + ++ VS++ +
Sbjct: 1357 AYGLNINYRHYTILVDTMCQRGY--LMAVSRTGI 1388
>gi|12642612|gb|AAK00310.1|AF315820_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Glaucosphaera
vacuolata]
Length = 1746
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L TDG N+ + ++ + D + ND+ M T GIE ++ E++ V + G V
Sbjct: 1331 VLDTDGTNLLAVMSHKDV-DYTRTVSNDVVEMFVTLGIEGVRAALLNEIRGVISFDGAYV 1389
Query: 68 DPRHLSLVADYMT 80
+ RHL+++AD MT
Sbjct: 1390 NYRHLAILADIMT 1402
>gi|328354455|emb|CCA40852.1| DNA-directed RNA polymerase II subunit A [Komagataella pastoris CBS
7435]
Length = 1460
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 19/105 (18%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
K ++ TDG+ V ++ H+L++ + T GIEAA II E+ + +G+
Sbjct: 1301 KEVIATDGV-VGCKTKTNHVLEVYE-----------TLGIEAARSCIINEIDYTMSKHGM 1348
Query: 66 EVDPRHLSLVADYMTH-------SEFDLIIMVSKSWMLDEVKSTT 103
VDPRH+ L+ D M++ + F L M L + TT
Sbjct: 1349 SVDPRHIQLLGDVMSYKGEVLGITRFGLAKMRDSVLQLASFEKTT 1393
>gi|301109379|ref|XP_002903770.1| DNA-directed RNA polymerase III largest subunit [Phytophthora
infestans T30-4]
gi|262096773|gb|EEY54825.1| DNA-directed RNA polymerase III largest subunit [Phytophthora
infestans T30-4]
Length = 1534
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 34 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH-------SEFDL 86
N I + T GIEAA +I EV + + YGI +D RHL L++D MT + F +
Sbjct: 1402 NHIIEVEKTLGIEAARELISSEVNYIMSAYGIGIDRRHLMLLSDIMTFKGEVLGITRFGI 1461
Query: 87 IIMVSKSWMLDEVKSTT 103
M ML + TT
Sbjct: 1462 AKMKESVLMLASFEKTT 1478
>gi|254583772|ref|XP_002497454.1| ZYRO0F05918p [Zygosaccharomyces rouxii]
gi|238940347|emb|CAR28521.1| ZYRO0F05918p [Zygosaccharomyces rouxii]
Length = 1744
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDG+N++ + + D +++Y N + GIEA + +EV NV A G V
Sbjct: 1305 VLETDGVNLSEVMTVPGV-DASRIYTNSFIDIMEVLGIEAGRAALYKEVFNVIASDGSYV 1363
Query: 68 DPRHLSLVADYMT 80
+ RH++L+ D MT
Sbjct: 1364 NYRHMALLVDVMT 1376
>gi|254573222|ref|XP_002493720.1| RNA polymerase III subunit C160, part of core enzyme [Komagataella
pastoris GS115]
gi|238033519|emb|CAY71541.1| RNA polymerase III subunit C160, part of core enzyme [Komagataella
pastoris GS115]
Length = 1460
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 19/105 (18%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
K ++ TDG+ V ++ H+L++ + T GIEAA II E+ + +G+
Sbjct: 1301 KEVIATDGV-VGCKTKTNHVLEVYE-----------TLGIEAARSCIINEIDYTMSKHGM 1348
Query: 66 EVDPRHLSLVADYMTH-------SEFDLIIMVSKSWMLDEVKSTT 103
VDPRH+ L+ D M++ + F L M L + TT
Sbjct: 1349 SVDPRHIQLLGDVMSYKGEVLGITRFGLAKMRDSVLQLASFEKTT 1393
>gi|210075525|ref|XP_501909.2| YALI0C16566p [Yarrowia lipolytica]
gi|199425290|emb|CAG82229.2| YALI0C16566p [Yarrowia lipolytica CLIB122]
Length = 1750
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 2 ETNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
+T + +L+TDGIN+ + + D + Y N + S GIEA + RE+ NV A
Sbjct: 1305 KTKMEWVLETDGINLAEVMAVDGV-DPYRTYSNSFVEVLSVLGIEATRSALYREILNVIA 1363
Query: 62 VYGIEVDPRHLSLVADYMTHSEFDLII 88
G V+ RH++L+ D MT + + I
Sbjct: 1364 FDGSYVNYRHMALLVDVMTSRGYLMAI 1390
>gi|346971808|gb|EGY15260.1| DNA-directed RNA polymerase II subunit RPB1 [Verticillium dahliae
VdLs.17]
Length = 1755
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
+D + Y N + + +GIEAA ++RE+ V A G V+ RHL+L+ D MT+
Sbjct: 1342 VDATRTYTNHLWQINEVFGIEAARGALVRELTQVLAFDGSYVNHRHLALLVDVMTY 1397
>gi|302410002|ref|XP_003002835.1| DNA-directed RNA polymerase II subunit RPB1 [Verticillium albo-atrum
VaMs.102]
gi|261358868|gb|EEY21296.1| DNA-directed RNA polymerase II subunit RPB1 [Verticillium albo-atrum
VaMs.102]
Length = 1756
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
+D + Y N + + +GIEAA ++RE+ V A G V+ RHL+L+ D MT+
Sbjct: 1342 VDATRTYTNHLWQINEVFGIEAARGALVRELTQVLAFDGSYVNHRHLALLVDVMTY 1397
>gi|157841394|gb|ABV83151.1| RNA polymerase 2 [Rhabditis sp. PS1130]
Length = 619
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG + + +H+ D + NDI + GIEA + I RE+ NV + G V
Sbjct: 534 LLETDGTALLKVLSEQHI-DPVRTTSNDICEIFEVLGIEAVRKSIEREMNNVISFDGSYV 592
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 593 NYRHLALLCDVMT 605
>gi|157841466|gb|ABV83199.1| RNA polymerase 2 [Pellioditis typica]
Length = 633
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG + + +H+ D + NDI + GIEA + I RE+ NV + G V
Sbjct: 538 LLETDGTALLKVLSEQHI-DPIRTTSNDICEIFEVLGIEAVRKSIEREMNNVISFDGSYV 596
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 597 NYRHLALLCDVMT 609
>gi|157841468|gb|ABV83200.1| RNA polymerase 2 [Rhabditis brassicae]
Length = 628
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG + + +H+ D + NDI + GIEA + I RE+ NV + G V
Sbjct: 535 LLETDGTALLKVLSEQHI-DPVRTTSNDICEIFEVLGIEAVRKSIEREMNNVISFDGSYV 593
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 594 NYRHLALLCDVMT 606
>gi|302785289|ref|XP_002974416.1| hypothetical protein SELMODRAFT_442419 [Selaginella moellendorffii]
gi|300158014|gb|EFJ24638.1| hypothetical protein SELMODRAFT_442419 [Selaginella moellendorffii]
Length = 1348
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 2 ETNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
+ GK+ L +G N+ + + D + N I GIEAA II+E++
Sbjct: 1234 QEKGKYNLLVEGTNLKAVMGTEGV-DGRETTSNHIFETVEVLGIEAARNGIIKEIQYTMG 1292
Query: 62 VYGIEVDPRHLSLVADYMTH-SEF 84
+G+ +D RH+ L+AD MT+ EF
Sbjct: 1293 SHGMSIDQRHMMLLADVMTYRGEF 1316
>gi|242015075|ref|XP_002428200.1| DNA-directed RNA polymerase III largest subunit, putative [Pediculus
humanus corporis]
gi|212512752|gb|EEB15462.1| DNA-directed RNA polymerase III largest subunit, putative [Pediculus
humanus corporis]
Length = 1364
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
K+ L +G N+ + +L K N+I + + GIEAA + II E+K V +G+
Sbjct: 1221 KYKLFVEGYNLGEVMATNGVLG-TKTTSNNIFEVFTYLGIEAARQTIISEIKMVMENHGM 1279
Query: 66 EVDPRHLSLVADYMT 80
+D RH+ L+AD MT
Sbjct: 1280 SIDRRHIMLLADLMT 1294
>gi|5263288|gb|AAC47792.2| RNA polymerase II large subunit [Leishmania major]
Length = 1663
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 52/94 (55%), Gaps = 8/94 (8%)
Query: 8 LLKTDGINVNYI------SQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
++ T+G + I S+ ++++D +K N I + + GIEAA R ++ E++ +
Sbjct: 1298 MVDTEGTALQRIFVGVVNSEGKNIIDFSKTSSNKIPEVVTVLGIEAARRKMLSELREAYL 1357
Query: 62 VYGIEVDPRHLSLVADYMTHSEFDLIIMVSKSWM 95
YG+ ++ RH +++ D M + ++ VS++ +
Sbjct: 1358 AYGLNINYRHYTILVDTMCQRGY--LMAVSRTGI 1389
>gi|392592712|gb|EIW82038.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Coniophora puteana RWD-64-598 SS2]
Length = 1407
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 34 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
N + + GIEAA R II E++ + +G+ +DPRH+ L+ D M++
Sbjct: 1270 NHVIETSQVLGIEAARRTIINEIQTTMSAHGMTIDPRHVMLLGDIMSY 1317
>gi|387593897|gb|EIJ88921.1| RNA polymerase 2 [Nematocida parisii ERTm3]
Length = 1284
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 34 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHS 82
N+I+ T GIEAA I++E++ +GI VD RH+ L+AD M +
Sbjct: 1162 NNIYETYKTLGIEAARESIVKEIQYTIGQHGISVDTRHIGLLADVMCFT 1210
>gi|157841445|gb|ABV83185.1| RNA polymerase 2 [Poikilolaimus oxycercus]
Length = 612
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 11/81 (13%)
Query: 1 METNGKHLLKTDG-INVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNV 59
+ET+G LL+ G NV+ I + NDI + GIEAA + I RE+K+V
Sbjct: 540 LETDGTALLRVLGEPNVDRI----------RTTSNDICEIFEVLGIEAARKAIEREMKHV 589
Query: 60 FAVYGIEVDPRHLSLVADYMT 80
+ G V+ RHL+L+ D MT
Sbjct: 590 ISFDGSYVNYRHLALLCDVMT 610
>gi|156835819|ref|XP_001642173.1| hypothetical protein Kpol_162p1 [Vanderwaltozyma polyspora DSM 70294]
gi|156112609|gb|EDO14315.1| hypothetical protein Kpol_162p1 [Vanderwaltozyma polyspora DSM 70294]
Length = 1311
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDG+N+ + + D ++Y N + GIEA + REV NV A G V
Sbjct: 987 VLETDGVNLLEVMTVTGV-DPTRIYTNSFIDITEVLGIEAGRAALYREVYNVIASDGSYV 1045
Query: 68 DPRHLSLVADYMT 80
+ RH++L+ D MT
Sbjct: 1046 NYRHMALLVDVMT 1058
>gi|302835796|ref|XP_002949459.1| hypothetical protein VOLCADRAFT_80692 [Volvox carteri f. nagariensis]
gi|300265286|gb|EFJ49478.1| hypothetical protein VOLCADRAFT_80692 [Volvox carteri f. nagariensis]
Length = 1879
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+GIN+ + + + D + N I + GIEAA +++EV+NV + G V
Sbjct: 1335 ILDTEGINLEQVLAFEGV-DPRRTMSNSIIEVLEVLGIEAARAALLKEVRNVISFDGSYV 1393
Query: 68 DPRHLSLVADYMT 80
+ RHL+ + D MT
Sbjct: 1394 NYRHLACLVDIMT 1406
>gi|387595902|gb|EIJ93525.1| RNA polymerase 2 [Nematocida parisii ERTm1]
Length = 1284
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 34 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHS 82
N+I+ T GIEAA I++E++ +GI VD RH+ L+AD M +
Sbjct: 1162 NNIYETYKTLGIEAARESIVKEIQYTIGQHGISVDTRHIGLLADVMCFT 1210
>gi|356605938|gb|AET25000.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 13
KK-2011]
Length = 623
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDG + + R + D + NDI + + GIEA + I RE+ NV + G V
Sbjct: 537 ILETDGTALLRVLSERQI-DPVRTSSNDICEIFAVLGIEAVRKAIEREMDNVISFDGSYV 595
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 596 NYRHLALLCDVMT 608
>gi|407849768|gb|EKG04383.1| DNA-directed RNA polymerase III largest subunit, putative
[Trypanosoma cruzi]
Length = 1553
Score = 45.1 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 31/52 (59%)
Query: 30 KLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
++ N + + GIEAA +VI+ E++ + Y + +D RH+ L+AD MT
Sbjct: 1387 RVVCNHVAVVERVLGIEAARQVIVNEIQGILKAYSLSIDIRHIYLLADLMTQ 1438
>gi|407410320|gb|EKF32797.1| DNA-directed RNA polymerase III largest subunit, putative
[Trypanosoma cruzi marinkellei]
Length = 1629
Score = 45.1 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 31/52 (59%)
Query: 30 KLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
++ N + + GIEAA +VI+ E++ + Y + +D RH+ L+AD MT
Sbjct: 1463 RVVCNHVAVVERVLGIEAARQVIVNEIQGILKAYSLSIDIRHIYLLADLMTQ 1514
>gi|195996443|ref|XP_002108090.1| hypothetical protein TRIADDRAFT_49721 [Trichoplax adhaerens]
gi|190588866|gb|EDV28888.1| hypothetical protein TRIADDRAFT_49721 [Trichoplax adhaerens]
Length = 1784
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDG+N+ + + + D K NDI + S GIEA + + +E+ +V + G V
Sbjct: 1314 ILETDGVNLQKVLSVKDV-DAVKSTSNDIVEIFSVLGIEAVRKAVEKEMNHVISFDGSYV 1372
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1373 NYRHLALLCDVMT 1385
>gi|190405143|gb|EDV08410.1| RNA polymerase II core subunit [Saccharomyces cerevisiae RM11-1a]
Length = 1733
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDG+N++ + + D ++Y N + GIEA + +EV NV A G V
Sbjct: 1305 VLETDGVNLSEVMTVPGI-DPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYV 1363
Query: 68 DPRHLSLVADYMT 80
+ RH++L+ D MT
Sbjct: 1364 NYRHMALLVDVMT 1376
>gi|71665443|ref|XP_819691.1| DNA-directed RNA polymerase III largest subunit [Trypanosoma cruzi
strain CL Brener]
gi|70885004|gb|EAN97840.1| DNA-directed RNA polymerase III largest subunit, putative
[Trypanosoma cruzi]
Length = 1553
Score = 45.1 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 31/52 (59%)
Query: 30 KLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
++ N + + GIEAA +VI+ E++ + Y + +D RH+ L+AD MT
Sbjct: 1387 RVVCNHVAVVERVLGIEAARQVIVNEIQGILKAYSLSIDIRHIYLLADLMTQ 1438
>gi|427788425|gb|JAA59664.1| Putative rna polymerase i large subunit [Rhipicephalus pulchellus]
Length = 1390
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 28/47 (59%)
Query: 34 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMT 80
N+ + T GIEAA IIRE+ +GI VD RHL L+AD MT
Sbjct: 1248 NNTSEVEKTLGIEAARTTIIREIGVTMQNHGISVDRRHLMLLADLMT 1294
>gi|6320061|ref|NP_010141.1| Rpo21p [Saccharomyces cerevisiae S288c]
gi|2507347|sp|P04050.2|RPB1_YEAST RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA
polymerase II subunit 1; Short=RNA polymerase II subunit
B1; AltName: Full=DNA-directed RNA polymerase III largest
subunit; AltName: Full=RNA polymerase II subunit B220
gi|14278324|pdb|1I3Q|A Chain A, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
gi|14278335|pdb|1I50|A Chain A, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
gi|14278365|pdb|1I6H|A Chain A, Rna Polymerase Ii Elongation Complex
gi|20150713|pdb|1K83|A Chain A, Crystal Structure Of Yeast Rna Polymerase Ii Complexed With
The Inhibitor Alpha Amanitin
gi|30749616|pdb|1NIK|A Chain A, Wild Type Rna Polymerase Ii
gi|30749737|pdb|1NT9|A Chain A, Complete 12-Subunit Rna Polymerase Ii
gi|34810553|pdb|1PQV|A Chain A, Rna Polymerase Ii-Tfiis Complex
gi|46015415|pdb|1R5U|A Chain A, Rna Polymerase Ii Tfiib Complex
gi|46015780|pdb|1SFO|A Chain A, Rna Polymerase Ii Strand Separated Elongation Complex
gi|56965911|pdb|1R9S|A Chain A, Rna Polymerase Ii Strand Separated Elongation Complex,
Matched Nucleotide
gi|56965923|pdb|1R9T|A Chain A, Rna Polymerase Ii Strand Separated Elongation Complex,
Mismatched Nucleotide
gi|56966107|pdb|1TWA|A Chain A, Rna Polymerase Ii Complexed With Atp
gi|56966121|pdb|1TWC|A Chain A, Rna Polymerase Ii Complexed With Gtp
gi|56966131|pdb|1TWF|A Chain A, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
gi|56966141|pdb|1TWG|A Chain A, Rna Polymerase Ii Complexed With Ctp
gi|56966151|pdb|1TWH|A Chain A, Rna Polymerase Ii Complexed With 2'datp
gi|58177164|pdb|1WCM|A Chain A, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
gi|61679444|pdb|1Y1W|A Chain A, Complete Rna Polymerase Ii Elongation Complex
gi|61679461|pdb|1Y77|A Chain A, Complete Rna Polymerase Ii Elongation Complex With Substrate
Analogue Gmpcpp
gi|61679502|pdb|1Y1V|A Chain A, Refined Rna Polymerase Ii-tfiis Complex
gi|61679515|pdb|1Y1Y|A Chain A, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
gi|83754243|pdb|2B63|A Chain A, Complete Rna Polymerase Ii-Rna Inhibitor Complex
gi|110590854|pdb|2B8K|A Chain A, 12-Subunit Rna Polymerase Ii
gi|122920061|pdb|2E2H|A Chain A, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With Gtp
gi|122920076|pdb|2E2I|A Chain A, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dgtp
gi|122920091|pdb|2E2J|A Chain A, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
Gmpcpp
gi|122921030|pdb|2NVQ|A Chain A, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
2'dutp
gi|122921066|pdb|2NVT|A Chain A, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Gmpcpp
gi|122921082|pdb|2NVX|A Chain A, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dutp
gi|122921097|pdb|2NVY|A Chain A, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
gi|122921109|pdb|2NVZ|A Chain A, Rna Polymerase Ii Elongation Complex With Utp, Updated
112006
gi|134104674|pdb|2JA5|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex A
gi|134104689|pdb|2JA6|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex B
gi|134104710|pdb|2JA7|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex C
gi|134104722|pdb|2JA7|M Chain M, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex C
gi|134104734|pdb|2JA8|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex D
gi|146387184|pdb|2YU9|A Chain A, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With Utp
gi|160877773|pdb|2R7Z|A Chain A, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
gi|161172227|pdb|2R92|A Chain A, Elongation Complex Of Rna Polymerase Ii With Artificial Rdrp
Scaffold
gi|161172240|pdb|2R93|A Chain A, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
gi|190613462|pdb|2VUM|A Chain A, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
gi|194368734|pdb|3CQZ|A Chain A, Crystal Structure Of 10 Subunit Rna Polymerase Ii In Complex
With The Inhibitor Alpha-Amanitin
gi|224983590|pdb|3FKI|A Chain A, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
gi|239781916|pdb|3GTG|A Chain A, Backtracked Rna Polymerase Ii Complex With 12mer Rna
gi|239781929|pdb|3GTJ|A Chain A, Backtracked Rna Polymerase Ii Complex With 13mer Rna
gi|239781942|pdb|3GTK|A Chain A, Backtracked Rna Polymerase Ii Complex With 18mer Rna
gi|239781955|pdb|3GTL|A Chain A, Backtracked Rna Polymerase Ii Complex With 13mer With G<>u
Mismatch
gi|239781968|pdb|3GTM|A Chain A, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
gi|239781982|pdb|3GTO|A Chain A, Backtracked Rna Polymerase Ii Complex With 15mer Rna
gi|239781995|pdb|3GTP|A Chain A, Backtracked Rna Polymerase Ii Complex With 24mer Rna
gi|239782008|pdb|3GTQ|A Chain A, Backtracked Rna Polymerase Ii Complex Induced By Damage
gi|240104511|pdb|3H3V|B Chain B, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
gi|254839441|pdb|3HOU|A Chain A, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839456|pdb|3HOU|M Chain M, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839471|pdb|3HOV|A Chain A, Complete Rna Polymerase Ii Elongation Complex Ii
gi|254839486|pdb|3HOW|A Chain A, Complete Rna Polymerase Ii Elongation Complex Iii With A T-U
Mismatch And A Frayed Rna 3'-Uridine
gi|254839501|pdb|3HOX|A Chain A, Complete Rna Polymerase Ii Elongation Complex V
gi|254839516|pdb|3HOY|A Chain A, Complete Rna Polymerase Ii Elongation Complex Vi
gi|254839531|pdb|3HOZ|A Chain A, Complete Rna Polymerase Ii Elongation Complex Iv With A T-U
Mismatch And A Frayed Rna 3'-Guanine
gi|257471946|pdb|3I4M|A Chain A, 8-oxoguanine Containing Rna Polymerase Ii Elongation Complex
D
gi|257471961|pdb|3I4N|A Chain A, 8-oxoguanine Containing Rna Polymerase Ii Elongation Complex
E
gi|266618765|pdb|3K1F|A Chain A, Crystal Structure Of Rna Polymerase Ii In Complex With Tfiib
gi|269914552|pdb|3K7A|A Chain A, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
gi|295982475|pdb|3M3Y|A Chain A, Rna Polymerase Ii Elongation Complex C
gi|295982488|pdb|3M4O|A Chain A, Rna Polymerase Ii Elongation Complex B
gi|325053963|pdb|3PO2|A Chain A, Arrested Rna Polymerase Ii Elongation Complex
gi|325053978|pdb|3PO3|A Chain A, Arrested Rna Polymerase Ii Reactivation Intermediate
gi|326634538|pdb|3QT1|A Chain A, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
gi|343197456|pdb|3RZD|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
gi|343197468|pdb|3RZO|A Chain A, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
gi|343197480|pdb|3S14|A Chain A, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
gi|343197492|pdb|3S15|A Chain A, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
gi|343197504|pdb|3S16|A Chain A, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
gi|343197516|pdb|3S17|A Chain A, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
gi|343197528|pdb|3S1M|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 1)
gi|343197540|pdb|3S1N|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 2)
gi|343197552|pdb|3S1Q|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Atp
gi|343197564|pdb|3S1R|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Gtp
gi|343197576|pdb|3S2D|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
Containing A 5br- U
gi|343781197|pdb|3S2H|A Chain A, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
Containing A 2[prime]-Iodo Atp
gi|414145446|pdb|4BBR|A Chain A, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145459|pdb|4BBS|A Chain A, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
gi|1419221|emb|CAA65619.1| RPB1 [Saccharomyces cerevisiae]
gi|1431217|emb|CAA98713.1| RPO21 [Saccharomyces cerevisiae]
gi|151941861|gb|EDN60217.1| RNA polymerase [Saccharomyces cerevisiae YJM789]
gi|285810894|tpg|DAA11718.1| TPA: Rpo21p [Saccharomyces cerevisiae S288c]
gi|349576938|dbj|GAA22107.1| K7_Rpo21p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392300684|gb|EIW11775.1| Rpo21p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 1733
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDG+N++ + + D ++Y N + GIEA + +EV NV A G V
Sbjct: 1305 VLETDGVNLSEVMTVPGI-DPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYV 1363
Query: 68 DPRHLSLVADYMT 80
+ RH++L+ D MT
Sbjct: 1364 NYRHMALLVDVMT 1376
>gi|357380836|pdb|4A3C|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
gi|359546290|pdb|4A3B|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
gi|359546308|pdb|4A3D|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
gi|359546325|pdb|4A3E|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546342|pdb|4A3F|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546359|pdb|4A3J|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
gi|359546376|pdb|4A3K|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
gi|359546392|pdb|4A3L|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546409|pdb|4A3M|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|374977879|pdb|4A3G|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
gi|374977894|pdb|4A3I|A Chain A, Rna Polymerase Ii Binary Complex With Dna
gi|380764979|pdb|4A93|A Chain A, Rna Polymerase Ii Elongation Complex Containing A Cpd Lesion
Length = 1732
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDG+N++ + + D ++Y N + GIEA + +EV NV A G V
Sbjct: 1305 VLETDGVNLSEVMTVPGI-DPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYV 1363
Query: 68 DPRHLSLVADYMT 80
+ RH++L+ D MT
Sbjct: 1364 NYRHMALLVDVMT 1376
>gi|256273567|gb|EEU08500.1| Rpo21p [Saccharomyces cerevisiae JAY291]
Length = 1733
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDG+N++ + + D ++Y N + GIEA + +EV NV A G V
Sbjct: 1305 VLETDGVNLSEVMTVPGI-DPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYV 1363
Query: 68 DPRHLSLVADYMT 80
+ RH++L+ D MT
Sbjct: 1364 NYRHMALLVDVMT 1376
>gi|427798211|gb|JAA64557.1| Putative rna polymerase i large subunit, partial [Rhipicephalus
pulchellus]
Length = 1429
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 28/47 (59%)
Query: 34 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMT 80
N+ + T GIEAA IIRE+ +GI VD RHL L+AD MT
Sbjct: 1287 NNTSEVEKTLGIEAARTTIIREIGVTMQNHGISVDRRHLMLLADLMT 1333
>gi|410079408|ref|XP_003957285.1| hypothetical protein KAFR_0D05030 [Kazachstania africana CBS 2517]
gi|372463870|emb|CCF58150.1| hypothetical protein KAFR_0D05030 [Kazachstania africana CBS 2517]
Length = 1462
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 29 NKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
+K N + ++S GIEAA II E+ + +G+ VDPRH+ L+ D MT+
Sbjct: 1313 SKTVTNHVLEVSSVLGIEAARSSIIGEIDYTMSNHGMSVDPRHIQLLGDVMTY 1365
>gi|257051866|ref|YP_003129699.1| RNA polymerase Rpb1 domain 5 [Halorhabdus utahensis DSM 12940]
gi|256690629|gb|ACV10966.1| RNA polymerase Rpb1 domain 5 [Halorhabdus utahensis DSM 12940]
Length = 907
Score = 45.1 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI-EVDPRHLSLVADYMTHS 82
+D ++ N+IH + S G+EAA II E N G+ +V+ RHL LVAD MT++
Sbjct: 773 VDASRTTCNNIHEIYSNLGVEAARESIIEETMNTLEEQGLDDVNVRHLMLVADIMTNN 830
>gi|401626472|gb|EJS44418.1| rpo21p [Saccharomyces arboricola H-6]
Length = 1726
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDG+N++ + + D ++Y N + GIEA + +EV NV A G V
Sbjct: 1305 VLETDGVNLSEVMTVPGI-DPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYV 1363
Query: 68 DPRHLSLVADYMT 80
+ RH++L+ D MT
Sbjct: 1364 NYRHMALLVDVMT 1376
>gi|335438709|ref|ZP_08561445.1| DNA-directed RNA polymerase subunit A [Halorhabdus tiamatea SARL4B]
gi|334890831|gb|EGM29091.1| DNA-directed RNA polymerase subunit A [Halorhabdus tiamatea SARL4B]
Length = 904
Score = 45.1 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI-EVDPRHLSLVADYMTHS 82
+D ++ N+IH + S G+EAA II E N G+ +V+ RHL LVAD MT++
Sbjct: 770 VDASRTTCNNIHEIYSNLGVEAAREAIIDETMNTLEEQGLDDVNVRHLMLVADIMTNN 827
>gi|4398|emb|CAA26904.1| put. RNA polymerase II largest subunit [Saccharomyces cerevisiae]
Length = 1726
Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDG+N++ + + D ++Y N + GIEA + +EV NV A G V
Sbjct: 1305 VLETDGVNLSEVMTVPGI-DPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYV 1363
Query: 68 DPRHLSLVADYMT 80
+ RH++L+ D MT
Sbjct: 1364 NYRHMALLVDVMT 1376
>gi|414586606|tpg|DAA37177.1| TPA: putative DNA-directed RNA polymerase family protein [Zea mays]
Length = 336
Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
+D K N I T GIEAA R II E++ +G+ +D RH+ L+AD MT+
Sbjct: 196 VDARKTKSNHIMETNQTLGIEAARRSIIDEIQYTMKSHGMNIDRRHMMLLADLMTY 251
>gi|399218552|emb|CCF75439.1| unnamed protein product [Babesia microti strain RI]
Length = 1459
Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 30 KLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH-------S 82
K+ N + +A GIEAA VII E+ Y IE+D RH+ L+ D MT +
Sbjct: 1339 KVKSNHVIEVAKVLGIEAARSVIISEICKCMDAYSIEIDYRHMCLLGDVMTFRGEVLGIN 1398
Query: 83 EFDLIIMVSKSWMLDEVKST 102
F + M + + ML + T
Sbjct: 1399 RFGIQKMRTSTLMLASFEET 1418
>gi|307166498|gb|EFN60583.1| DNA-directed RNA polymerase III subunit RPC1 [Camponotus floridanus]
Length = 1384
Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%)
Query: 42 TYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMT 80
T GIEAA I+ E+K+V +GI VD RHL L+AD MT
Sbjct: 1240 TLGIEAARTTIMAEIKSVMENHGISVDRRHLILLADLMT 1278
>gi|302308245|ref|NP_985109.2| AER252Cp [Ashbya gossypii ATCC 10895]
gi|299789362|gb|AAS52933.2| AER252Cp [Ashbya gossypii ATCC 10895]
gi|374108334|gb|AEY97241.1| FAER252Cp [Ashbya gossypii FDAG1]
Length = 1459
Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 12/76 (15%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
+ ++ TDG+ V Y ++ H L+ V D+ GIEAA II E+ + +G+
Sbjct: 1300 RDVMTTDGV-VGYKTKTNHFLE-----VYDV------LGIEAARTSIIDEIDYTMSNHGM 1347
Query: 66 EVDPRHLSLVADYMTH 81
VDPRH+ L+ D MT+
Sbjct: 1348 SVDPRHIQLLGDVMTY 1363
>gi|448330662|ref|ZP_21519941.1| DNA-directed RNA polymerase subunit A'' [Natrinema versiforme JCM
10478]
gi|445611166|gb|ELY64926.1| DNA-directed RNA polymerase subunit A'' [Natrinema versiforme JCM
10478]
Length = 398
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI-EVDPRHLSLVADYMTH 81
+D ++ N+IH + GIEAA II E N A G+ +V+ RHL LVAD M++
Sbjct: 263 VDASRTTCNNIHEIHRNLGIEAAREAIIEETNNTLAEQGLDDVNVRHLMLVADMMSN 319
>gi|403159566|ref|XP_003320172.2| DNA-directed RNA polymerase III subunit C1 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|375168152|gb|EFP75753.2| DNA-directed RNA polymerase III subunit C1 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 1419
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 34 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH-------SEFDL 86
N I S GIEAA II+E+ +G++VDPRH+ L+ D M + + F +
Sbjct: 1289 NHIMEAQSVLGIEAARNCIIKEISYTMDSHGLKVDPRHMMLLGDIMCYKGEVLGITRFGI 1348
Query: 87 IIMVSKSWMLDEVKSTT 103
M ML + TT
Sbjct: 1349 AKMKDSVLMLASFEKTT 1365
>gi|320580596|gb|EFW94818.1| RNA polymerase II largest subunit [Ogataea parapolymorpha DL-1]
Length = 1730
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDG+N+ + + D + Y N + GIEAA + +E+ NV A G V
Sbjct: 1307 VLETDGVNLADVLAVEGV-DTTRTYSNSFVEILFVLGIEAARSALYKEILNVIAFDGSYV 1365
Query: 68 DPRHLSLVADYMTH 81
+ RHL+L+ D MT+
Sbjct: 1366 NYRHLALLVDLMTY 1379
>gi|296422783|ref|XP_002840938.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637165|emb|CAZ85129.1| unnamed protein product [Tuber melanosporum]
Length = 1025
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMT 80
+D + Y N + +GIEA ++RE++ V A G V+ RHL+L+ D MT
Sbjct: 615 VDTTRTYSNTFEEILQVFGIEATRGALLRELRQVLAFDGSYVNERHLALLCDVMT 669
>gi|356541271|ref|XP_003539102.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Glycine
max]
Length = 1391
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVK-NVFAVYGIEVDPRHLSLVADYMTHS 82
+D K N IH + T GIEAA I++E+K + +G+ +D RH+ L+AD MT +
Sbjct: 1251 IDGRKTVSNHIHEVRDTLGIEAARESIVKEIKYTMVDTHGMNIDIRHMMLLADMMTAT 1308
>gi|391343926|ref|XP_003746256.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit RPC1-like [Metaseiulus occidentalis]
Length = 1386
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%)
Query: 30 KLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHS 82
K N+I ++ GIEAA II E++ +GI +D RHL L+AD MT +
Sbjct: 1242 KCRCNNILEVSEVLGIEAARHQIITEMRETMEGHGISIDMRHLMLLADLMTRT 1294
>gi|448082723|ref|XP_004195204.1| Piso0_005751 [Millerozyma farinosa CBS 7064]
gi|359376626|emb|CCE87208.1| Piso0_005751 [Millerozyma farinosa CBS 7064]
Length = 1758
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDG+N+ + + D + Y N+ + S GIEA + +E+ NV A G V
Sbjct: 1312 VLETDGVNLADVMAVPGV-DATRTYSNNFIEILSVLGIEATRTALFKEILNVIAFDGSYV 1370
Query: 68 DPRHLSLVADYMT 80
+ RH++L+ D MT
Sbjct: 1371 NYRHMALLVDVMT 1383
>gi|294654840|ref|XP_002770038.1| DEHA2A13618p [Debaryomyces hansenii CBS767]
gi|199429189|emb|CAR65414.1| DEHA2A13618p [Debaryomyces hansenii CBS767]
Length = 1749
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDG+N+ + + D ++ Y N+ + S GIEA + +E+ NV A G V
Sbjct: 1312 VLETDGVNLADVMAVSGV-DSSRTYSNNFIEVLSVLGIEATRTALFKEILNVIAFDGSYV 1370
Query: 68 DPRHLSLVADYMT 80
+ RH++L+ D MT
Sbjct: 1371 NYRHMALLVDVMT 1383
>gi|190407445|gb|EDV10712.1| DNA-directed RNA polymerase III largest subunit [Saccharomyces
cerevisiae RM11-1a]
gi|207341165|gb|EDZ69295.1| YOR116Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259149599|emb|CAY86403.1| Rpo31p [Saccharomyces cerevisiae EC1118]
gi|323331486|gb|EGA72901.1| Rpo31p [Saccharomyces cerevisiae AWRI796]
gi|323352093|gb|EGA84630.1| Rpo31p [Saccharomyces cerevisiae VL3]
Length = 1460
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 29 NKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
++ N + + S GIEAA IIRE+ + +G+ VDPRH+ L+ D MT+
Sbjct: 1312 SRTTTNHVLEVFSVLGIEAARYSIIREINYTMSNHGMSVDPRHIQLLGDVMTY 1364
>gi|157841478|gb|ABV83205.1| RNA polymerase 2 [Pellioditis sp. JU274]
Length = 526
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 1 METNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 60
++ + +L+TDGI + + +++ D + NDI + GIEA + I RE+ NV
Sbjct: 433 FKSKAEWILETDGIGLLRVLSEQNI-DPVRTTSNDICEIFEVLGIEAVRKSIEREMNNVI 491
Query: 61 AVYGIEVDPRHLSLVADYMT 80
+ G V+ RHL+L+ D MT
Sbjct: 492 SFDGSYVNYRHLALLCDVMT 511
>gi|448356449|ref|ZP_21545182.1| DNA-directed RNA polymerase subunit A'' [Natrialba chahannaoensis
JCM 10990]
gi|445653482|gb|ELZ06353.1| DNA-directed RNA polymerase subunit A'' [Natrialba chahannaoensis
JCM 10990]
Length = 399
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI-EVDPRHLSLVADYMTH 81
+D ++ N+IH + GIEAA II E N A G+ +V+ RHL LV+D MT+
Sbjct: 263 VDASRTTCNNIHEIHRNLGIEAAREAIIEETNNTLAEQGLDDVNVRHLMLVSDMMTN 319
>gi|353251633|pdb|3J0K|A Chain A, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
Length = 1455
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDG+N++ + + D ++Y N + GIEA + +EV NV A G V
Sbjct: 1305 VLETDGVNLSEVMTVPGI-DPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYV 1363
Query: 68 DPRHLSLVADYMT 80
+ RH++L+ D MT
Sbjct: 1364 NYRHMALLVDVMT 1376
>gi|256272995|gb|EEU07959.1| Rpo31p [Saccharomyces cerevisiae JAY291]
gi|349581277|dbj|GAA26435.1| K7_Rpo31p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 1460
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 29 NKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
++ N + + S GIEAA IIRE+ + +G+ VDPRH+ L+ D MT+
Sbjct: 1312 SRTTTNHVLEVFSVLGIEAARYSIIREINYTMSNHGMSVDPRHIQLLGDVMTY 1364
>gi|76800713|ref|YP_325721.1| DNA-directed RNA polymerase subunit A [Natronomonas pharaonis DSM
2160]
gi|76556578|emb|CAI48149.1| DNA-directed RNA polymerase subunit A'' (subunit C)
(intein-containing) [Natronomonas pharaonis DSM 2160]
Length = 894
Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI-EVDPRHLSLVADYMTHS 82
+D ++ N+IH + + GIEAA II E N G+ +V+ RHL LVAD MT++
Sbjct: 758 VDASRTTCNNIHEIHNNLGIEAAREAIIEETMNTLEEQGLDDVNIRHLMLVADIMTNN 815
>gi|238880428|gb|EEQ44066.1| DNA-directed RNA polymerase II largest subunit [Candida albicans
WO-1]
Length = 1742
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDG+N+ + + D + Y ND + S GIEA + +E+ NV A G V
Sbjct: 1307 VLETDGVNLADVMAVPGV-DSTRTYSNDFIEVLSVLGIEATRSSLYKEILNVIAFDGSYV 1365
Query: 68 DPRHLSLVADYMT 80
+ RH++L+ D MT
Sbjct: 1366 NYRHMALLVDVMT 1378
>gi|68473217|ref|XP_719414.1| hypothetical protein CaO19.7655 [Candida albicans SC5314]
gi|46441230|gb|EAL00529.1| hypothetical protein CaO19.7655 [Candida albicans SC5314]
Length = 1728
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDG+N+ + + D + Y ND + S GIEA + +E+ NV A G V
Sbjct: 1307 VLETDGVNLADVMAVPGV-DSTRTYSNDFIEVLSVLGIEATRSSLYKEILNVIAFDGSYV 1365
Query: 68 DPRHLSLVADYMT 80
+ RH++L+ D MT
Sbjct: 1366 NYRHMALLVDVMT 1378
>gi|356605942|gb|AET25002.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 20
KK-2011]
Length = 505
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDG + + R + D + NDI + GIEA + I RE+ NV + G V
Sbjct: 413 ILETDGTALLRVLSERQI-DPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYV 471
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 472 NYRHLALLCDVMT 484
>gi|213404374|ref|XP_002172959.1| DNA-directed RNA polymerase II subunit RPB1 [Schizosaccharomyces
japonicus yFS275]
gi|212001006|gb|EEB06666.1| DNA-directed RNA polymerase II subunit RPB1 [Schizosaccharomyces
japonicus yFS275]
Length = 1748
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDGIN+ S +D ++ Y N + GIEA +++E++NV G V
Sbjct: 1311 VLETDGINLAE-SMAVEGVDPSRTYSNSFVEVLQVLGIEATRSALLKELRNVIEFDGSYV 1369
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1370 NYRHLALLCDVMT 1382
>gi|324500904|gb|ADY40409.1| DNA-directed RNA polymerase III subunit RPC1 [Ascaris suum]
Length = 1405
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
+D + Y N+ +A GIEAA II E+ + +GI +D RH+ L+AD MT+
Sbjct: 1258 IDGRRTYFNNALTVAEVLGIEAARTSIISEILSTMESHGIGLDQRHVMLLADVMTY 1313
>gi|6324690|ref|NP_014759.1| Rpo31p [Saccharomyces cerevisiae S288c]
gi|133356|sp|P04051.1|RPC1_YEAST RecName: Full=DNA-directed RNA polymerase III subunit RPC1; Short=RNA
polymerase III subunit C1; AltName: Full=DNA-directed RNA
polymerase III largest subunit; AltName: Full=RNA
polymerase III subunit C160
gi|4400|emb|CAA26905.1| RNA polymerase III largest subunit [Saccharomyces cerevisiae]
gi|1050828|emb|CAA62123.1| ORF O3254 [Saccharomyces cerevisiae]
gi|1164961|emb|CAA64036.1| YOR3254c [Saccharomyces cerevisiae]
gi|1420309|emb|CAA99314.1| RPO31 [Saccharomyces cerevisiae]
gi|151945738|gb|EDN63979.1| RNA polymerase C [Saccharomyces cerevisiae YJM789]
gi|285814998|tpg|DAA10891.1| TPA: Rpo31p [Saccharomyces cerevisiae S288c]
gi|392296445|gb|EIW07547.1| Rpo31p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 1460
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 41 STYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
S GIEAA IIRE+ + +G+ VDPRH+ L+ D MT+
Sbjct: 1324 SVLGIEAARYSIIREINYTMSNHGMSVDPRHIQLLGDVMTY 1364
>gi|297746170|emb|CBI16226.3| unnamed protein product [Vitis vinifera]
Length = 1819
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 30/47 (63%)
Query: 34 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMT 80
N I + T GIEAA + II E++ A +G+ +D RH+ L+AD MT
Sbjct: 1687 NHIIEVQQTLGIEAARKCIINEIQYTMASHGMSIDIRHMMLLADLMT 1733
>gi|207347072|gb|EDZ73379.1| YDL140Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 1578
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDG+N++ + + D ++Y N + GIEA + +EV NV A G V
Sbjct: 1150 VLETDGVNLSEVMTVPGI-DPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYV 1208
Query: 68 DPRHLSLVADYMT 80
+ RH++L+ D MT
Sbjct: 1209 NYRHMALLVDVMT 1221
>gi|146423605|ref|XP_001487729.1| hypothetical protein PGUG_01105 [Meyerozyma guilliermondii ATCC
6260]
gi|146388850|gb|EDK37008.1| hypothetical protein PGUG_01105 [Meyerozyma guilliermondii ATCC
6260]
Length = 1018
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDG+N+ + + D + Y N+ + S GIEA + +E+ NV A G V
Sbjct: 573 VLETDGVNLADVMAVPGV-DAKRTYSNNFIEILSVLGIEATRSALFKEILNVIAFDGSYV 631
Query: 68 DPRHLSLVADYMT 80
+ RH++L+ D MT
Sbjct: 632 NYRHMALLVDVMT 644
>gi|448354758|ref|ZP_21543513.1| DNA-directed RNA polymerase subunit A'' [Natrialba hulunbeirensis
JCM 10989]
gi|445637089|gb|ELY90245.1| DNA-directed RNA polymerase subunit A'' [Natrialba hulunbeirensis
JCM 10989]
Length = 399
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI-EVDPRHLSLVADYMTH 81
+D ++ N+IH + GIEAA II E N A G+ +V+ RHL LV+D MT+
Sbjct: 263 VDASRTTCNNIHEIHRNLGIEAAREAIIEETNNTLAEQGLDDVNVRHLMLVSDMMTN 319
>gi|365763066|gb|EHN04597.1| Rpo31p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 1460
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 41 STYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
S GIEAA IIRE+ + +G+ VDPRH+ L+ D MT+
Sbjct: 1324 SVLGIEAARYSIIREINYTMSNHGMSVDPRHIQLLGDVMTY 1364
>gi|367052355|ref|XP_003656556.1| hypothetical protein THITE_2121340 [Thielavia terrestris NRRL 8126]
gi|347003821|gb|AEO70220.1| hypothetical protein THITE_2121340 [Thielavia terrestris NRRL 8126]
Length = 1751
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
+D + ND++ + +GIEAA +++E+ V A G V+ RHL+L+ D MT+
Sbjct: 1343 VDTKRTSTNDLYQIVDVFGIEAARAALLQELTQVLAFDGSYVNHRHLALLVDVMTY 1398
>gi|157841400|gb|ABV83155.1| RNA polymerase 2 [Rhabditis brassicae]
Length = 205
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
LL+TDG + + +H+ D + NDI + GIEA + I RE+ NV + G V
Sbjct: 119 LLETDGTALLKVLSEQHI-DPVRTTSNDICEIFEVLGIEAVRKSIEREMNNVISFDGSYV 177
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 178 NYRHLALLCDVMT 190
>gi|116182152|ref|XP_001220925.1| DNA-directed RNA polymerase II largest subunit [Chaetomium globosum
CBS 148.51]
gi|88186001|gb|EAQ93469.1| DNA-directed RNA polymerase II largest subunit [Chaetomium globosum
CBS 148.51]
Length = 1756
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
+D + ND++ + +GIEAA +++E+ V A G V+ RHL+L+ D MT+
Sbjct: 1347 VDTKRTSTNDLYQIVDVFGIEAARSALMQELTQVLAFDGSYVNHRHLALLVDVMTY 1402
>gi|403223773|dbj|BAM41903.1| DNA-directed RNA polymerase III largest subunit RPC1 [Theileria
orientalis strain Shintoku]
Length = 1643
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 34 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMT 80
N + +A GIEAA VII E++ Y I++D R++ L+AD MT
Sbjct: 1526 NHVFEVAEVLGIEAARSVIISEIQKCMDAYSIDIDGRYMKLLADVMT 1572
>gi|429329501|gb|AFZ81260.1| DNA-directed RNA polymerase III C1 subunit, putative [Babesia equi]
Length = 1548
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 29 NKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMT 80
N + N I+ +A GIEAA II E++ Y I++D R++ L+ D MT
Sbjct: 1425 NAVKTNHIYEVAQVLGIEAARSTIISEIQKCMDAYSIDIDGRYMKLLGDIMT 1476
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,348,479,044
Number of Sequences: 23463169
Number of extensions: 80488775
Number of successful extensions: 226585
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1518
Number of HSP's successfully gapped in prelim test: 399
Number of HSP's that attempted gapping in prelim test: 224822
Number of HSP's gapped (non-prelim): 1993
length of query: 154
length of database: 8,064,228,071
effective HSP length: 117
effective length of query: 37
effective length of database: 9,614,004,594
effective search space: 355718169978
effective search space used: 355718169978
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 71 (32.0 bits)