BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16768
(154 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P91875|RPA1_DROME DNA-directed RNA polymerase I subunit RPA1 OS=Drosophila melanogaster
GN=RpI1 PE=1 SV=2
Length = 1642
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/74 (67%), Positives = 61/74 (82%)
Query: 7 HLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIE 66
LLKTDGIN+ + Q+ +LDLN+LY NDIH +A TYGIEAA++VI++EV NVF VYGI
Sbjct: 1498 QLLKTDGINIGEMFQHNKILDLNRLYSNDIHAIARTYGIEAASQVIVKEVSNVFKVYGIT 1557
Query: 67 VDPRHLSLVADYMT 80
VD RHLSL+ADYMT
Sbjct: 1558 VDRRHLSLIADYMT 1571
>sp|O35134|RPA1_MOUSE DNA-directed RNA polymerase I subunit RPA1 OS=Mus musculus GN=Polr1a
PE=1 SV=2
Length = 1717
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 60/73 (82%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+GIN+ + +Y +LDL +LY NDIH MA+TYGIEAA RVI +E+K+VFAVYGI V
Sbjct: 1574 VLNTEGINLPELFKYSEILDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAV 1633
Query: 68 DPRHLSLVADYMT 80
DPRHLSLVADYM
Sbjct: 1634 DPRHLSLVADYMC 1646
>sp|O95602|RPA1_HUMAN DNA-directed RNA polymerase I subunit RPA1 OS=Homo sapiens GN=POLR1A
PE=1 SV=2
Length = 1720
Score = 102 bits (255), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 60/73 (82%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+GIN+ + +Y +LDL +LY NDIH +A+TYGIEAA RVI +E+K+VFAVYGI V
Sbjct: 1577 VLNTEGINLPELFKYAEVLDLRRLYSNDIHAIANTYGIEAALRVIEKEIKDVFAVYGIAV 1636
Query: 68 DPRHLSLVADYMT 80
DPRHLSLVADYM
Sbjct: 1637 DPRHLSLVADYMC 1649
>sp|O54889|RPA1_RAT DNA-directed RNA polymerase I subunit RPA1 OS=Rattus norvegicus
GN=Polr1a PE=1 SV=1
Length = 1716
Score = 102 bits (254), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 60/73 (82%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L T+GIN+ + +Y +LDL +LY NDIH +A+TYGIEAA RVI +E+K+VFAVYGI V
Sbjct: 1573 VLNTEGINLPELFKYSEVLDLRRLYSNDIHAVANTYGIEAALRVIEKEIKDVFAVYGIAV 1632
Query: 68 DPRHLSLVADYMT 80
DPRHLSLVADYM
Sbjct: 1633 DPRHLSLVADYMC 1645
>sp|P15398|RPA1_SCHPO DNA-directed RNA polymerase I subunit rpa1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpa1 PE=1 SV=2
Length = 1689
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 50/70 (71%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
T+G+N+ I ++ + + +N +Y NDI + YG+EAA I+ EV +VF VYGI VDPR
Sbjct: 1544 TEGVNLKAIWEFYNEISMNDIYTNDIAAILRIYGVEAARNAIVHEVSSVFGVYGIAVDPR 1603
Query: 71 HLSLVADYMT 80
HLSL+ADYMT
Sbjct: 1604 HLSLIADYMT 1613
>sp|Q86H36|RPA1_DICDI DNA-directed RNA polymerase I subunit rpa1 OS=Dictyostelium
discoideum GN=polr1a PE=3 SV=1
Length = 1615
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 50/72 (69%)
Query: 9 LKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVD 68
++++G+N++ I + R L ++++Y NDI+ + YG+EA + + E+ NVFA YGI VD
Sbjct: 1473 IQSEGVNLSEIFELRDKLKIDEIYTNDIYAILQKYGVEACRQAVTSEISNVFAAYGISVD 1532
Query: 69 PRHLSLVADYMT 80
RHL L+ DYMT
Sbjct: 1533 KRHLILLGDYMT 1544
>sp|P10964|RPA1_YEAST DNA-directed RNA polymerase I subunit RPA190 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPA190 PE=1
SV=2
Length = 1664
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 47/78 (60%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
NGK +L T+G+N + +D++ + ND+ + TYG+EAA I+ E+ NVF+ Y
Sbjct: 1514 NGKRVLVTEGVNFQAMWDQEAFIDVDGITSNDVAAVLKTYGVEAARNTIVNEINNVFSRY 1573
Query: 64 GIEVDPRHLSLVADYMTH 81
I V RHL L+AD MT
Sbjct: 1574 AISVSFRHLDLIADMMTR 1591
>sp|Q976A6|RPOA2_SULTO DNA-directed RNA polymerase subunit A'' OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GN=rpoA2 PE=3 SV=2
Length = 392
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 61/101 (60%), Gaps = 3/101 (2%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
++++ TDG N+ + + + D+NK+ N+IH +A T+GIEAA I RE+K V G+
Sbjct: 245 EYVIITDGSNLEGVIGIKGV-DVNKIQTNNIHEIADTFGIEAAREAIAREIKKVLEEQGL 303
Query: 66 EVDPRHLSLVADYMTHSEFDLIIMVSKSWMLDEVKSTTARS 106
+VD RH+ LVAD MT + ++ + + + E S AR+
Sbjct: 304 DVDMRHILLVADIMTRT--GVVRQIGRHGVTGEKSSVLARA 342
>sp|C3N7Q1|RPOA2_SULIY DNA-directed RNA polymerase subunit A'' OS=Sulfolobus islandicus
(strain Y.G.57.14 / Yellowstone #1) GN=rpoA2 PE=3 SV=1
Length = 392
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 60/101 (59%), Gaps = 3/101 (2%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
++++ TDG N++ + + + D+ K+ N+I + +GIEAA +IIRE+ V A G+
Sbjct: 245 EYIILTDGSNLSGVLSVKGV-DIAKVETNNIREIEEVFGIEAAREIIIREISKVLAEQGL 303
Query: 66 EVDPRHLSLVADYMTHSEFDLIIMVSKSWMLDEVKSTTARS 106
+VD RH+ LVAD MT + ++ + + + E S AR+
Sbjct: 304 DVDMRHILLVADVMTRT--GVVRQIGRHGVTGEKNSVLARA 342
>sp|C3NFS2|RPOA2_SULIN DNA-directed RNA polymerase subunit A'' OS=Sulfolobus islandicus
(strain Y.N.15.51 / Yellowstone #2) GN=rpoA2 PE=3 SV=1
Length = 392
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 60/101 (59%), Gaps = 3/101 (2%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
++++ TDG N++ + + + D+ K+ N+I + +GIEAA +IIRE+ V A G+
Sbjct: 245 EYIILTDGSNLSGVLSVKGV-DIAKVETNNIREIEEVFGIEAAREIIIREISKVLAEQGL 303
Query: 66 EVDPRHLSLVADYMTHSEFDLIIMVSKSWMLDEVKSTTARS 106
+VD RH+ LVAD MT + ++ + + + E S AR+
Sbjct: 304 DVDMRHILLVADVMTRT--GVVRQIGRHGVTGEKNSVLARA 342
>sp|C3MYA0|RPOA2_SULIM DNA-directed RNA polymerase subunit A'' OS=Sulfolobus islandicus
(strain M.14.25 / Kamchatka #1) GN=rpoA2 PE=3 SV=1
Length = 392
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 60/101 (59%), Gaps = 3/101 (2%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
++++ TDG N++ + + + D+ K+ N+I + +GIEAA +IIRE+ V A G+
Sbjct: 245 EYIILTDGSNLSGVLSVKGV-DIAKVETNNIREIEEVFGIEAAREIIIREISKVLAEQGL 303
Query: 66 EVDPRHLSLVADYMTHSEFDLIIMVSKSWMLDEVKSTTARS 106
+VD RH+ LVAD MT + ++ + + + E S AR+
Sbjct: 304 DVDMRHILLVADVMTRT--GVVRQIGRHGVTGEKNSVLARA 342
>sp|C3MRK4|RPOA2_SULIL DNA-directed RNA polymerase subunit A'' OS=Sulfolobus islandicus
(strain L.S.2.15 / Lassen #1) GN=rpoA2 PE=3 SV=1
Length = 392
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 60/101 (59%), Gaps = 3/101 (2%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
++++ TDG N++ + + + D+ K+ N+I + +GIEAA +IIRE+ V A G+
Sbjct: 245 EYIILTDGSNLSGVLSVKGV-DIAKVETNNIREIEEVFGIEAAREIIIREISKVLAEQGL 303
Query: 66 EVDPRHLSLVADYMTHSEFDLIIMVSKSWMLDEVKSTTARS 106
+VD RH+ LVAD MT + ++ + + + E S AR+
Sbjct: 304 DVDMRHILLVADVMTRT--GVVRQIGRHGVTGEKNSVLARA 342
>sp|C4KIV9|RPOA2_SULIK DNA-directed RNA polymerase subunit A'' OS=Sulfolobus islandicus
(strain M.16.4 / Kamchatka #3) GN=rpoA2 PE=3 SV=1
Length = 392
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 60/101 (59%), Gaps = 3/101 (2%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
++++ TDG N++ + + + D+ K+ N+I + +GIEAA +IIRE+ V A G+
Sbjct: 245 EYIILTDGSNLSGVLSVKGV-DIAKVETNNIREIEEVFGIEAAREIIIREISKVLAEQGL 303
Query: 66 EVDPRHLSLVADYMTHSEFDLIIMVSKSWMLDEVKSTTARS 106
+VD RH+ LVAD MT + ++ + + + E S AR+
Sbjct: 304 DVDMRHILLVADVMTRT--GVVRQIGRHGVTGEKNSVLARA 342
>sp|C3MZM9|RPOA2_SULIA DNA-directed RNA polymerase subunit A'' OS=Sulfolobus islandicus
(strain M.16.27) GN=rpoA2 PE=3 SV=1
Length = 392
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 60/101 (59%), Gaps = 3/101 (2%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
++++ TDG N++ + + + D+ K+ N+I + +GIEAA +IIRE+ V A G+
Sbjct: 245 EYIILTDGSNLSGVLSVKGV-DIAKVETNNIREIEEVFGIEAAREIIIREISKVLAEQGL 303
Query: 66 EVDPRHLSLVADYMTHSEFDLIIMVSKSWMLDEVKSTTARS 106
+VD RH+ LVAD MT + ++ + + + E S AR+
Sbjct: 304 DVDMRHILLVADVMTRT--GVVRQIGRHGVTGEKNSVLARA 342
>sp|P58192|RPOA2_SULSO DNA-directed RNA polymerase subunit A'' OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rpoA2
PE=1 SV=1
Length = 392
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 60/101 (59%), Gaps = 3/101 (2%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
++++ TDG N++ + + + D+ K+ N+I + +GIEAA +IIRE+ V A G+
Sbjct: 245 EYIILTDGSNLSGVLSVKGV-DVAKVETNNIREIEEVFGIEAAREIIIREISKVLAEQGL 303
Query: 66 EVDPRHLSLVADYMTHSEFDLIIMVSKSWMLDEVKSTTARS 106
+VD RH+ L+AD MT + ++ + + + E S AR+
Sbjct: 304 DVDIRHILLIADVMTRT--GIVRQIGRHGVTGEKNSVLARA 342
>sp|P29158|RPOA2_THECE DNA-directed RNA polymerase subunit A'' OS=Thermococcus celer
GN=rpoA2 PE=3 SV=2
Length = 393
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 72/147 (48%), Gaps = 13/147 (8%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
G+++++T+G N + + + D + NDI +A GIEAA II E+
Sbjct: 240 TGEYIIRTEGSNFKQVLKVPGV-DPTRTRTNDIREIAEVLGIEAARNAIIDEILKTMEEQ 298
Query: 64 GIEVDPRHLSLVADYMTHSEFDLIIM-VSKSWMLDEVKSTTARSVTPACEPNSHHDVKKI 122
G+EVD RH+ LVAD MT D +I + + ++ E S AR+ A E + H
Sbjct: 299 GLEVDVRHIMLVADMMT---LDGVIRPIGRHGIVGEKASVLARA---AFEITTQH---LF 349
Query: 123 EFKKQNKILPL--VLQNSLTGSSYPAN 147
E ++ + PL V++N L G P
Sbjct: 350 EAAERGAVDPLNGVVENVLIGQPVPVG 376
>sp|B6YT17|RPOA2_THEON DNA-directed RNA polymerase subunit A'' OS=Thermococcus onnurineus
(strain NA1) GN=rpoA2 PE=3 SV=1
Length = 391
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 69/144 (47%), Gaps = 20/144 (13%)
Query: 3 TNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 62
+N K +LK G+ D + N+IH +A GIEAA II E+ N
Sbjct: 248 SNFKQILKVPGV------------DPTRTRTNNIHEIAEVLGIEAARNAIIEEIVNTMRD 295
Query: 63 YGIEVDPRHLSLVADYMTHSEFDLIIM-VSKSWMLDEVKSTTARSVTPACEPNSHHDVKK 121
G+EVD RH+ LVAD MT D +I+ + + ++ E S AR+ A E + H +
Sbjct: 296 QGLEVDVRHIMLVADMMT---LDGVILPIGRHGIVGEKASVLARA---AFEITTQHLFEA 349
Query: 122 IEFKKQNKILPLVLQNSLTGSSYP 145
E + + L V++N L G P
Sbjct: 350 AE-RGETDPLNGVVENVLIGQPVP 372
>sp|P11514|RPOA2_SULAC DNA-directed RNA polymerase subunit A'' OS=Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 /
NBRC 15157 / NCIMB 11770) GN=rpoA2 PE=3 SV=2
Length = 393
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
++++ TDG N+ I + D+NK+ N+IH + GIEAA +I RE+K V G+
Sbjct: 246 EYVIITDGSNLEGIMNVTGV-DINKIQTNNIHEVEEVLGIEAARELISREIKKVLEEQGL 304
Query: 66 EVDPRHLSLVADYMTHS 82
+VD RH+ LV+D MT +
Sbjct: 305 DVDMRHIVLVSDIMTRT 321
>sp|A4YCR0|RPOA2_METS5 DNA-directed RNA polymerase subunit A'' OS=Metallosphaera sedula
(strain ATCC 51363 / DSM 5348) GN=rpoA2 PE=3 SV=1
Length = 392
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
++++ TDG N+ + + + D++++ N++H + S G+EAA +I RE+K V G+
Sbjct: 245 EYVIITDGSNLEGVLGVKGV-DVSRIETNNLHEVESVLGVEAARELITREIKRVLEEQGL 303
Query: 66 EVDPRHLSLVADYMTHS 82
+VD RH+ LV+D MT +
Sbjct: 304 DVDIRHIELVSDIMTRT 320
>sp|Q9V113|RPOA2_PYRAB DNA-directed RNA polymerase subunit A'' OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=rpoA2 PE=3 SV=1
Length = 397
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 67/146 (45%), Gaps = 20/146 (13%)
Query: 3 TNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 62
+N K +LK G+ D + N+IH +A GIEAA II E+ N
Sbjct: 250 SNFKQVLKVPGV------------DPTRTKTNNIHEIAEVLGIEAARNAIIEEIMNTMRE 297
Query: 63 YGIEVDPRHLSLVADYMTHSEFDLIIM-VSKSWMLDEVKSTTARSVTPACEPNSHHDVKK 121
G+EVD RH+ LVAD MT D ++ + + ++ E S AR+ A E H +
Sbjct: 298 QGLEVDIRHIMLVADIMT---LDGVVRPIGRHGVVGEKASVLARA---AFEITVQHLFEA 351
Query: 122 IEFKKQNKILPLVLQNSLTGSSYPAN 147
E + + L V++N L G P
Sbjct: 352 AERGEVDN-LSGVIENVLIGQPVPVG 376
>sp|C5A207|RPOA2_THEGJ DNA-directed RNA polymerase subunit A'' OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=rpoA2 PE=3 SV=1
Length = 391
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 69/148 (46%), Gaps = 24/148 (16%)
Query: 3 TNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 62
+N K +LK G+ D + N+I +A GIEAA II E+ N
Sbjct: 248 SNFKQVLKVPGV------------DPTRTRTNNIWEIADVLGIEAARNAIIEEIVNTMRE 295
Query: 63 YGIEVDPRHLSLVADYMTHSEFDLIIM-VSKSWMLDEVKSTTARSVTPACEPNSHHDVKK 121
G+EVD RH+ LVAD MT D +I + + ++ E S AR+ A E + H
Sbjct: 296 QGLEVDIRHIMLVADMMT---LDGVIRPIGRHGIVGEKSSVLARA---AFEITTQH---L 346
Query: 122 IEFKKQNKILPL--VLQNSLTGSSYPAN 147
E ++ ++ PL V++N L G P
Sbjct: 347 FEAAERGEVDPLNGVVENVLIGQPVPVG 374
>sp|O93777|RPOA2_PYRHO DNA-directed RNA polymerase subunit A'' OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=rpoA2 PE=3 SV=1
Length = 397
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 67/146 (45%), Gaps = 20/146 (13%)
Query: 3 TNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 62
+N K +LK G+ D + N+IH +A GIEAA II E+ N
Sbjct: 250 SNFKQVLKVPGV------------DPTRTRTNNIHEIAEVLGIEAARNAIIEEIINTMHE 297
Query: 63 YGIEVDPRHLSLVADYMTHSEFDLIIM-VSKSWMLDEVKSTTARSVTPACEPNSHHDVKK 121
G+EVD RH+ LVAD MT D ++ + + ++ E S AR+ A E H +
Sbjct: 298 QGLEVDIRHIMLVADIMT---LDGVVRPIGRHGVVGEKASVLARA---AFEITVQHLFEA 351
Query: 122 IEFKKQNKILPLVLQNSLTGSSYPAN 147
E + + L V++N L G P
Sbjct: 352 AERGEVDN-LSGVIENVLIGQPVPVG 376
>sp|Q8ZYQ7|RPOA2_PYRAE DNA-directed RNA polymerase subunit A'' OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=rpoA2 PE=3 SV=1
Length = 379
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
T+G N+ + Q + D + Y ND+H + GIEA ++ +E+K V G++VD R
Sbjct: 240 TEGTNLEAVLQLEEV-DPTRTYSNDLHEVEEVLGIEATRALVAQEIKRVLEEQGLDVDIR 298
Query: 71 HLSLVADYMTHS 82
H+ LVAD MT S
Sbjct: 299 HMYLVADAMTWS 310
>sp|Q8U0M5|RPOA2_PYRFU DNA-directed RNA polymerase subunit A'' OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=rpoA2
PE=1 SV=1
Length = 397
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 67/146 (45%), Gaps = 20/146 (13%)
Query: 3 TNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 62
+N K +LK G+ D + N+IH +A GIEAA II E+ +
Sbjct: 250 SNFKQVLKVPGV------------DPTRTRTNNIHEIAEVLGIEAARNAIIDEIVSTMQE 297
Query: 63 YGIEVDPRHLSLVADYMTHSEFDLIIM-VSKSWMLDEVKSTTARSVTPACEPNSHHDVKK 121
G+EVD RH+ LVAD MT D I+ + + ++ E S AR+ A E H +
Sbjct: 298 QGLEVDIRHIMLVADMMT---LDGIVRPIGRHGVVGEKSSVLARA---AFEITVQHLFEA 351
Query: 122 IEFKKQNKILPLVLQNSLTGSSYPAN 147
E K + L V++N L G P
Sbjct: 352 AE-KGEVDNLNGVIENVLIGQPVPVG 376
>sp|O28390|RPOA2_ARCFU DNA-directed RNA polymerase subunit A'' OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rpoA2 PE=3 SV=1
Length = 380
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
+++L T+G N+ I + + + D + N+I+ + GIEAA IIRE + G+
Sbjct: 232 EYVLYTEGSNLKKIMKVKGV-DFTRTTTNNIYEIYEVLGIEAARNAIIREALDTLEEQGL 290
Query: 66 EVDPRHLSLVADYMT 80
EVD RH+ LVAD MT
Sbjct: 291 EVDVRHIMLVADVMT 305
>sp|Q5JE34|RPOA2_PYRKO DNA-directed RNA polymerase subunit A'' OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=rpoA2 PE=3
SV=1
Length = 391
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 68/148 (45%), Gaps = 24/148 (16%)
Query: 3 TNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAV 62
+N K +LK G+ D + N+I +A GIEAA II E+ +
Sbjct: 248 SNFKQVLKVPGV------------DPTRTRTNNIWEIAEVLGIEAARNAIIDEIVSTMRE 295
Query: 63 YGIEVDPRHLSLVADYMTHSEFDLIIM-VSKSWMLDEVKSTTARSVTPACEPNSHHDVKK 121
G+EVD RH+ LVAD MT D +I + + ++ E S AR+ A E + H
Sbjct: 296 QGLEVDVRHIMLVADMMT---LDGVIRPIGRHGIVGEKASVLARA---AFEITTQHLFAA 349
Query: 122 IEFKKQNKILPL--VLQNSLTGSSYPAN 147
E + ++ PL V++N L G P
Sbjct: 350 AE---RGEVDPLNGVVENVLIGQPVPVG 374
>sp|Q58446|RPOA2_METJA DNA-directed RNA polymerase subunit A'' OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rpoA2 PE=3 SV=1
Length = 859
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
G+++L T G N+ + + + D + N+I + GIEAA II E++N
Sbjct: 703 GGEYVLYTQGSNLREVFKIDGV-DTTRTITNNIIEIQEVLGIEAARNAIINEMRNTLEQQ 761
Query: 64 GIEVDPRHLSLVADYMT 80
G+EVD RHL LVAD MT
Sbjct: 762 GLEVDIRHLMLVADIMT 778
>sp|Q979F5|RPOA2_THEVO DNA-directed RNA polymerase subunit A'' OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=rpoA2 PE=3 SV=1
Length = 508
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 33/57 (57%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHS 82
+D + Y NDI +A+ GIEAA I+ E + G+ VD RHL LVAD MT S
Sbjct: 377 VDPTRTYTNDIVEIATVLGIEAARNAILNEAQRTLQEQGLNVDVRHLMLVADMMTFS 433
>sp|Q9YAU2|RPOA2_AERPE DNA-directed RNA polymerase subunit A'' OS=Aeropyrum pernix (strain
ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=rpoA2 PE=3 SV=2
Length = 407
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 30/47 (63%)
Query: 34 NDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMT 80
NDI +A GIEAA II E+K V G++VD RHL L+AD MT
Sbjct: 287 NDIQEIAQVLGIEAARTAIIEEIKRVLEDSGLDVDIRHLMLIADLMT 333
>sp|P08968|RPC1_TRYBB DNA-directed RNA polymerase III subunit RPC1 OS=Trypanosoma brucei
brucei PE=3 SV=1
Length = 1530
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
+D ++ N + + GIEAA RVI+ E++N+ Y + +D RH+ L+AD MT
Sbjct: 1362 VDSTRVVCNHVAVVERVLGIEAARRVIVDEIQNILKAYSLSIDVRHVYLLADLMTQ 1417
>sp|O27126|RPOA2_METTH DNA-directed RNA polymerase subunit A'' OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpoA2 PE=3 SV=1
Length = 451
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 11 TDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPR 70
T+G N+ + + + D + NDIH + + GIEAA II E K G+ VD R
Sbjct: 310 TEGSNLGAVLKEEGV-DKVRTTTNDIHEIETVLGIEAARNAIIHEAKRTMEEQGLTVDIR 368
Query: 71 HLSLVADYMT 80
H+ LVAD MT
Sbjct: 369 HIMLVADMMT 378
>sp|P09847|RPOA2_METTW DNA-directed RNA polymerase subunit A'' OS=Methanothermobacter
thermoautotrophicus (strain Winter) GN=rpoA2 PE=1 SV=2
Length = 449
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 31/55 (56%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMT 80
+D + NDIH + + GIEAA II E K G+ VD RH+ LVAD MT
Sbjct: 324 VDKVRTTTNDIHEIETVLGIEAARNAIIHEAKRTMEEQGLTVDIRHIMLVADMMT 378
>sp|Q03586|RPOA2_THEAC DNA-directed RNA polymerase subunit A'' OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=rpoA2 PE=1 SV=1
Length = 508
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/57 (45%), Positives = 32/57 (56%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHS 82
+D + Y NDI +A+ GIEAA I+ E G+ VD RHL LVAD MT S
Sbjct: 377 VDPTRTYTNDIVEIANVLGIEAARNAILNEALRTLQEQGLNVDVRHLMLVADMMTFS 433
>sp|A6UV49|RPOA2_META3 DNA-directed RNA polymerase subunit A'' OS=Methanococcus aeolicus
(strain Nankai-3 / ATCC BAA-1280) GN=rpoA2 PE=3 SV=1
Length = 397
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 2 ETNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
+T G+++L ++G N++ + + + D+ + N+I + GIEAA II E+ V
Sbjct: 232 DTMGEYILHSEGSNLSAVFEIDGV-DMVRTTSNNIVEIQDVLGIEAARNAIINEISGVLN 290
Query: 62 VYGIEVDPRHLSLVADYMT 80
G+ VD RHL ++AD MT
Sbjct: 291 QQGLNVDIRHLMVIADIMT 309
>sp|P04052|RPB1_DROME DNA-directed RNA polymerase II subunit RPB1 OS=Drosophila
melanogaster GN=RpII215 PE=3 SV=4
Length = 1887
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYG 64
G+ LL+TDG ++ + R + D + NDI + GIEA + + +E+ V YG
Sbjct: 1324 GEWLLETDGTSMMKVLSERDV-DPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYG 1382
Query: 65 IEVDPRHLSLVADYMT 80
+ V+ RHL+L+ D MT
Sbjct: 1383 LYVNYRHLALLCDVMT 1398
>sp|P14247|RPOA2_METVS DNA-directed RNA polymerase subunit A'' OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rpoA2 PE=3 SV=2
Length = 386
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
+++L ++G N+ + + + D K N+I + G+EAA IIRE+ G+
Sbjct: 234 EYVLYSEGSNLKEVFEIDGV-DTTKTTTNNIVEIQDVLGVEAARNAIIREMDATLGNQGL 292
Query: 66 EVDPRHLSLVADYMT 80
VD RHL +VAD MT
Sbjct: 293 TVDKRHLMMVADLMT 307
>sp|Q8PUR2|RPOA2_METMA DNA-directed RNA polymerase subunit A'' OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=rpoA2 PE=3 SV=1
Length = 408
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
++ L T+G + + Q+ + D + N+I+ + GIEAA II+E + G+
Sbjct: 242 EYTLYTEGSALREVLQFEGV-DRTRTSTNNINEIYEVLGIEAARNAIIKEATDTLREQGL 300
Query: 66 EVDPRHLSLVADYMT 80
VD RH+ LVAD MT
Sbjct: 301 TVDIRHIMLVADLMT 315
>sp|Q75A34|RPB1_ASHGO DNA-directed RNA polymerase II subunit RPB1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=RPB1 PE=3 SV=2
Length = 1745
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDG+N++ + + D ++Y N + + GIEA + +EV NV A G V
Sbjct: 1306 VLETDGVNLSEVMSVPGV-DPTRIYTNSFIDIMNVLGIEAGRAALYKEVYNVIASDGSYV 1364
Query: 68 DPRHLSLVADYMTHSEF 84
+ RH++L+ D MT F
Sbjct: 1365 NYRHMALLVDVMTSQGF 1381
>sp|Q8TRB8|RPOA2_METAC DNA-directed RNA polymerase subunit A'' OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=rpoA2 PE=3 SV=1
Length = 397
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
++ L T+G + + Q+ + D + N+I+ + GIEAA II+E + G+
Sbjct: 239 EYTLYTEGSALRDVLQFEGV-DKTRTSTNNINEIYEVLGIEAARNAIIKEATDTLREQGL 297
Query: 66 EVDPRHLSLVADYMT 80
VD RH+ LVAD MT
Sbjct: 298 TVDIRHIMLVADLMT 312
>sp|P04050|RPB1_YEAST DNA-directed RNA polymerase II subunit RPB1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPO21 PE=1
SV=2
Length = 1733
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDG+N++ + + D ++Y N + GIEA + +EV NV A G V
Sbjct: 1305 VLETDGVNLSEVMTVPGI-DPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYV 1363
Query: 68 DPRHLSLVADYMT 80
+ RH++L+ D MT
Sbjct: 1364 NYRHMALLVDVMT 1376
>sp|P04051|RPC1_YEAST DNA-directed RNA polymerase III subunit RPC1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPO31 PE=1
SV=1
Length = 1460
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 41 STYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
S GIEAA IIRE+ + +G+ VDPRH+ L+ D MT+
Sbjct: 1324 SVLGIEAARYSIIREINYTMSNHGMSVDPRHIQLLGDVMTY 1364
>sp|P36594|RPB1_SCHPO DNA-directed RNA polymerase II subunit rpb1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpb1 PE=1 SV=1
Length = 1752
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 1 METNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVF 60
E + +L+TDGIN+ + D + Y N + GIEA +++E++NV
Sbjct: 1304 FERADEWVLETDGINLTEAMTVEGV-DATRTYSNSFVEILQILGIEATRSALLKELRNVI 1362
Query: 61 AVYGIEVDPRHLSLVADYMT 80
G V+ RHL+L+ D MT
Sbjct: 1363 EFDGSYVNYRHLALLCDVMT 1382
>sp|A5DCV3|RPB1_PICGU DNA-directed RNA polymerase II subunit RPB1 (Fragments) OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 /
JCM 1539 / NBRC 10279 / NRRL Y-324) GN=RPB1 PE=3 SV=2
Length = 1579
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDG+N+ + + D + Y N+ + S GIEA + +E+ NV A G V
Sbjct: 1139 VLETDGVNLADVMAVPGV-DAKRTYSNNFIEILSVLGIEATRSALFKEILNVIAFDGSYV 1197
Query: 68 DPRHLSLVADYMT 80
+ RH++L+ D MT
Sbjct: 1198 NYRHMALLVDVMT 1210
>sp|P16356|RPB1_CAEEL DNA-directed RNA polymerase II subunit RPB1 OS=Caenorhabditis elegans
GN=ama-1 PE=1 SV=3
Length = 1856
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L+TDG + + R + D + NDI + GIEA + I RE+ NV + G V
Sbjct: 1327 ILETDGTALLRVLSERQI-DPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYV 1385
Query: 68 DPRHLSLVADYMT 80
+ RHL+L+ D MT
Sbjct: 1386 NYRHLALLCDVMT 1398
>sp|O94666|RPC1_SCHPO DNA-directed RNA polymerase III subunit rpc1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpc1 PE=2 SV=1
Length = 1405
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 2 ETNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFA 61
+ +GK L +G + + ++ K N + M GIEAA II E+ A
Sbjct: 1232 QESGKIELFMEGTGLQAVMNTEGIVG-TKTSTNHVMEMKDVLGIEAARYSIISEIGYTMA 1290
Query: 62 VYGIEVDPRHLSLVADYMT 80
+G+ VDPRH+ L+ D MT
Sbjct: 1291 KHGLTVDPRHIMLLGDVMT 1309
>sp|P14248|RPB1_PLAFD DNA-directed RNA polymerase II subunit RPB1 OS=Plasmodium falciparum
(isolate CDC / Honduras) GN=RPII PE=3 SV=1
Length = 2452
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 8 LLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEV 67
+L TDG N+ I + D K NDI + GIEA R +++E++ V + V
Sbjct: 1915 VLDTDGCNLENIFCAPQV-DFKKTVSNDIVEIFEVLGIEAVRRALLKELRTVISFDSSYV 1973
Query: 68 DPRHLSLVADYMTHSEF 84
+ RHLS++ D MT +
Sbjct: 1974 NYRHLSILCDVMTQKGY 1990
>sp|Q6BI69|RPC1_DEBHA DNA-directed RNA polymerase III subunit RPC1 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC
2968) GN=RPC1 PE=3 SV=2
Length = 1457
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 12/76 (15%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
K ++ TDG+ V + H+L++ ++ GIEAA II E+ + +G+
Sbjct: 1300 KEVMSTDGV-VGTKTSTNHILEVFQVL-----------GIEAARASIIGEIDYTMSKHGM 1347
Query: 66 EVDPRHLSLVADYMTH 81
VDPRH+ L+ D MT+
Sbjct: 1348 SVDPRHIQLLGDVMTY 1363
>sp|P25202|RPC1_GIAIN DNA-directed RNA polymerase III subunit RPC1 OS=Giardia intestinalis
GN=RPOA3 PE=3 SV=1
Length = 1741
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMT 80
+D + N+I +A+T GIEAA I E+K +G+ VD RH+ L+AD M
Sbjct: 1531 IDFTRTLSNNIVEVANTLGIEAAVATISNEIKACMDSHGMAVDMRHIRLLADIMC 1585
>sp|P16355|RPA1_TRYBB DNA-directed RNA polymerase I subunit RPA1 OS=Trypanosoma brucei
brucei GN=TRP11 PE=1 SV=1
Length = 1744
Score = 43.1 bits (100), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 26 LDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTH 81
+ L++ DI M + +GIE+ + E+ +F Y VDPRHLSL+AD TH
Sbjct: 1609 IKLHQACSTDIRDMGTYFGIESGYAALYDELNKLFNRY--NVDPRHLSLIADTSTH 1662
>sp|Q6LXI7|RPOA2_METMP DNA-directed RNA polymerase subunit A'' OS=Methanococcus
maripaludis (strain S2 / LL) GN=rpoA2 PE=3 SV=1
Length = 386
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 6 KHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGI 65
+++L ++G N+ + + D K N+I + GIEAA II E+ G+
Sbjct: 234 EYILYSEGSNIKEVFDIEGV-DTTKTTTNNIVEIQDVLGIEAARNAIIYEMDATLGNQGL 292
Query: 66 EVDPRHLSLVADYM 79
VD RHL +VAD M
Sbjct: 293 TVDKRHLMMVADLM 306
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,130,032
Number of Sequences: 539616
Number of extensions: 1963413
Number of successful extensions: 5960
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 5633
Number of HSP's gapped (non-prelim): 352
length of query: 154
length of database: 191,569,459
effective HSP length: 107
effective length of query: 47
effective length of database: 133,830,547
effective search space: 6290035709
effective search space used: 6290035709
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)