Query psy16768
Match_columns 154
No_of_seqs 123 out of 889
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 21:31:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16768.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16768hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h0g_A DNA-directed RNA polyme 100.0 5.6E-36 1.9E-40 297.1 9.9 121 5-126 1308-1457(1752)
2 1twf_A B220, DNA-directed RNA 100.0 2.8E-35 9.6E-40 292.1 7.5 125 4-129 1301-1454(1733)
3 4ayb_C DNA-directed RNA polyme 100.0 4.5E-34 1.5E-38 247.1 7.8 118 3-121 245-391 (395)
4 2a6h_D DNA-directed RNA polyme 99.8 3.8E-20 1.3E-24 181.7 6.0 90 33-123 1329-1485(1524)
5 1hqm_D DNA-directed RNA polyme 99.7 4.2E-19 1.4E-23 172.9 4.4 92 32-124 1069-1227(1265)
6 3lu0_D DNA-directed RNA polyme 99.7 2.3E-18 8E-23 167.8 1.6 85 33-117 1214-1365(1407)
7 3ewt_E Tumor necrosis factor r 40.9 9.1 0.00031 21.0 0.8 14 70-83 2-15 (25)
8 2pa2_A 60S ribosomal protein L 30.2 23 0.00078 27.1 1.8 63 44-109 33-101 (151)
9 2l5q_A Uncharacterized protein 27.2 31 0.001 26.2 2.1 33 12-45 86-120 (142)
10 3zvr_A Dynamin-1; hydrolase, D 23.3 26 0.00087 32.9 1.1 10 144-153 506-515 (772)
11 2xqo_A Cellulosome enzyme, doc 21.9 1.1E+02 0.0039 24.5 4.5 96 35-144 45-149 (243)
12 3a1y_A 50S ribosomal protein P 20.9 98 0.0034 19.5 3.3 25 55-79 21-45 (58)
13 3r8n_R 30S ribosomal protein S 20.4 19 0.00066 22.9 -0.2 22 66-87 1-24 (55)
No 1
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.6e-36 Score=297.14 Aligned_cols=121 Identities=22% Similarity=0.272 Sum_probs=116.7
Q ss_pred CeEEEEEecCChHHHhccCCccccCcceeccHHHHHHhhCHHHHHHHHHHHHHHhhhhcCcccchhHHHHHHHHHhhhc-
Q psy16768 5 GKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSE- 83 (154)
Q Consensus 5 ~~~~l~teG~nl~~~~~~~d~vD~~r~~sNdI~~i~~~lGIEAaR~~Ii~Ei~~v~~~~Gi~Vd~rHi~LIaD~MT~~G- 83 (154)
++|+|+|||+||+++|.+ ++||++||+||||+||+++|||||||++|++||+.||+.||++||+|||+||||+||++|
T Consensus 1308 ~~~~l~teG~nL~~v~~~-~gVD~~rt~sNdI~ei~~vlGIEAAR~~Ii~Ei~~v~~~~G~~Vd~RHl~LlaD~MT~~G~ 1386 (1752)
T 3h0g_A 1308 DEWVLETDGINLTEAMTV-EGVDATRTYSNSFVEILQILGIEATRSALLKELRNVIEFDGSYVNYRHLALLCDVMTSRGH 1386 (1752)
T ss_dssp EEEEEECCSCCCSTTTSS-SSCCTTTCCCSCHHHHHHHSCHHHHHHHHHHHHHTTSCSSSCCCCHHHHHHHHHHHTSSSS
T ss_pred ceEEEEecccCHHHHhCc-CCCccccCeeCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCe
Confidence 489999999999999999 699999999999999999999999999999999999999999999999999999999999
Q ss_pred ---cchhhhcccc----------------------ccccccCCcccceeec---CCCCCchhhhhhhhhhc
Q psy16768 84 ---FDLIIMVSKS----------------------WMLDEVKSTTARSVTP---ACEPNSHHDVKKIEFKK 126 (154)
Q Consensus 84 ---~~R~Gm~~~~----------------------g~~D~l~svSa~Ii~G---~~GTG~~~~~~~~~~~~ 126 (154)
||||||++.. |+.|+|+|||||||+| ++|||+|+++.+.+.++
T Consensus 1387 ~~~itR~Gi~~~~~s~l~~aSFE~T~~~L~~Aa~~g~~D~l~gvse~Ii~G~~~~~GTG~fdll~~~~~l~ 1457 (1752)
T 3h0g_A 1387 LMAITRHGINRAETGALMRCSFEETVEILMDAAASGEKDDCKGISENIMLGQLAPMGTGAFDIYLDQDMLM 1457 (1752)
T ss_dssp CCCCCTTSCSCCCSHHHHHHHHSCCTHHHHHHGGGTCCBCCCCSTTGGGTCSCCCSBTTSCEECCCHHHHH
T ss_pred EEeechhhhccCCCCHHHHhhHHHHHHHHHHHHHhcCcccccChhHHhhcCCCcCCccceEEEEeCHHHhc
Confidence 9999998642 9999999999999999 99999999999998877
No 2
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Probab=100.00 E-value=2.8e-35 Score=292.08 Aligned_cols=125 Identities=22% Similarity=0.278 Sum_probs=115.2
Q ss_pred CCeEEEEEecCChHHHhccCCccccCcceeccHHHHHHhhCHHHHHHHHHHHHHHhhhhcCcccchhHHHHHHHHHhhhc
Q psy16768 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSE 83 (154)
Q Consensus 4 ~~~~~l~teG~nl~~~~~~~d~vD~~r~~sNdI~~i~~~lGIEAaR~~Ii~Ei~~v~~~~Gi~Vd~rHi~LIaD~MT~~G 83 (154)
+++|+|+|||+||+++|.++ +||++||+||||++|+++|||||||++|++|+++||+.||++||+|||+||||+||++|
T Consensus 1301 ~~~~~L~teG~nL~~vl~~~-~VD~~rt~SNdI~eI~~vlGIEAAR~~Ii~Ei~~V~~~~Gi~Vd~RHl~LlaD~MT~~G 1379 (1733)
T 1twf_A 1301 EPEWVLETDGVNLSEVMTVP-GIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMALLVDVMTTQG 1379 (1733)
T ss_dssp EEEEEEEEESCCHHHHTTST-TBCTTTCBCSCHHHHHHHHCHHHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTTTBS
T ss_pred CcceEEEeecccHHHHhccC-CcccccceeccHHHHHHHhhHHHHHHHHHHHHHHHHhhcCccccchhhhhhhhhhccCc
Confidence 45899999999999999995 79999999999999999999999999999999999999999999999999999999999
Q ss_pred ----cchhhhcccc----------------------ccccccCCcccceeec---CCCCCchhhhhhhhhhcccc
Q psy16768 84 ----FDLIIMVSKS----------------------WMLDEVKSTTARSVTP---ACEPNSHHDVKKIEFKKQNK 129 (154)
Q Consensus 84 ----~~R~Gm~~~~----------------------g~~D~l~svSa~Ii~G---~~GTG~~~~~~~~~~~~~~~ 129 (154)
|||+||++.. |+.|.|+|||+|||+| ++|||+|+++.+.+.+++..
T Consensus 1380 ~~~~itR~Gi~~~~~S~L~~aSFE~T~~~L~~Aa~~g~~D~l~gvsenII~G~~~~~GTG~FdLl~~~~~~~~~~ 1454 (1733)
T 1twf_A 1380 GLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRGVSENVILGQMAPIGTGAFDVMIDEESLVKYM 1454 (1733)
T ss_dssp SCCCSSSCSSSCSSCCTTSSCCSSCSHHHHHHHHHHTCEECCCSHHHHHHTTCCCSSGGGSSEEEECSCCC----
T ss_pred eecccchhhhcccCCCchhhcchhhhHHHHHHHHhccCcCcccccccccccCCCCCCCCccEEEEEchhhccccc
Confidence 9999997532 9999999999999999 99999999999987666543
No 3
>4ayb_C DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_C 4b1o_C 4b1p_Y 2waq_C 2wb1_C 3hkz_C 2pmz_C
Probab=100.00 E-value=4.5e-34 Score=247.07 Aligned_cols=118 Identities=27% Similarity=0.370 Sum_probs=111.9
Q ss_pred CCCeEEEEEecCChHHHhccCCccccCcceeccHHHHHHhhCHHHHHHHHHHHHHHhhhhcCcccchhHHHHHHHHHhhh
Q psy16768 3 TNGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHS 82 (154)
Q Consensus 3 ~~~~~~l~teG~nl~~~~~~~d~vD~~r~~sNdI~~i~~~lGIEAaR~~Ii~Ei~~v~~~~Gi~Vd~rHi~LIaD~MT~~ 82 (154)
++++|.+.|+|+|+.++|.+ +++|.++++|||+++|+++|||||||++|++|+++||+.||++||+|||+||||+||++
T Consensus 245 ~~~~~~~~t~g~~l~~~~~~-~~vd~~~~~sn~i~eI~~vlGiEAar~~iv~Ei~~V~~~~Gv~In~rHi~li~d~Mt~~ 323 (395)
T 4ayb_C 245 KGDEYIILTDGSNLSGVLSV-KGVDIAKVETNNIREIEEVFGIEAAREIIIREISKVLAEQGLDVDMRHILLVADVMTRT 323 (395)
T ss_dssp ETTEEEEEEESCCHHHHTTS-TTCCTTTCEESCTTHHHHHHCHHHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHGG
T ss_pred cCCEEEEEecCCCceeeeEe-ecccccccccCcchhhhhhhhHHHHHHHHHHhHHHHHhccCceechHHhhhhhhhhhcc
Confidence 35799999999999999999 59999999999999999999999999999999999999999999999999999999999
Q ss_pred c----cchhhhcccc----------------------ccccccCCcccceeec---CCCCCchhhhhh
Q psy16768 83 E----FDLIIMVSKS----------------------WMLDEVKSTTARSVTP---ACEPNSHHDVKK 121 (154)
Q Consensus 83 G----~~R~Gm~~~~----------------------g~~D~l~svSa~Ii~G---~~GTG~~~~~~~ 121 (154)
| ++|+|++.++ |+.|+|+|+|||||+| |+|||+|+++.+
T Consensus 324 G~~~~igr~g~s~~t~S~LsaASFqeTt~vLteAAi~Gk~D~L~GlkENVIvGklipaGTG~f~l~~~ 391 (395)
T 4ayb_C 324 GVVRQIGRHGVTGEKNSVLARAAFEVTVKHLLDAAARGDVEEFKGVVENIIIGHPIKLGTGMVELTMR 391 (395)
T ss_dssp GSCCCSSSSSHHHHCSCHHHHHHHSCTHHHHHHHHHTTCBCCCCSHHHHHHHTCCCSSGGGTCEEEEC
T ss_pred ceEeccCcccccCCCCCHHHHhcChhHHHHHHHHHhcCCCCCCCChHHHeecCCCCCCCcCceEEEec
Confidence 9 9999997532 9999999999999999 999999998765
No 4
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2 PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D* 2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D* 3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Probab=99.79 E-value=3.8e-20 Score=181.72 Aligned_cols=90 Identities=20% Similarity=0.299 Sum_probs=80.5
Q ss_pred eccHHHHHHhhCHHHHHHHHHHHHHHhhhhcCcccchhHHHHHHHHHhhh------------------------------
Q psy16768 33 VNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHS------------------------------ 82 (154)
Q Consensus 33 sNdI~~i~~~lGIEAaR~~Ii~Ei~~v~~~~Gi~Vd~rHi~LIaD~MT~~------------------------------ 82 (154)
+||+++|++++||||||++|++||++||+.||++||+|||+|||||||++
T Consensus 1329 ~~~~~dil~v~Giea~~~~iv~Eiq~Vyr~QGv~I~dKHIevIvrqM~~kv~i~~~Gdt~~l~Ge~v~~~~~~~~n~~~~ 1408 (1524)
T 2a6h_D 1329 AIDPHQLLEAKGPEAVERYLVEEIQKVYRAQGVKLHDKHIEIVVRQMMKYVEVTDPGDSRLLEGQVLEKWDVEALNERLI 1408 (1524)
T ss_dssp BCCHHHHHHHHCHHHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTTSEEEEEECSSSCSSCEEEHHHHHHHHHHHHTT
T ss_pred CCCchhheeecCHHHHHHHHHHHHHHHHHhcCcccchhHHHHHHHHHhceeEEecCCCccCCCCceeeHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999874
Q ss_pred --------------ccchhhhcccc--------------------ccccccCCcccceeec---CCCCCchhhhhhhh
Q psy16768 83 --------------EFDLIIMVSKS--------------------WMLDEVKSTTARSVTP---ACEPNSHHDVKKIE 123 (154)
Q Consensus 83 --------------G~~R~Gm~~~~--------------------g~~D~l~svSa~Ii~G---~~GTG~~~~~~~~~ 123 (154)
|+||++++..+ |+.|.|.|+++|||+| |+|||++. +++.+
T Consensus 1409 ~~g~~~a~~~~~llGITkasL~t~SfLsaASFqeTtrvLt~AAi~Gk~D~L~GlkENVIiG~lIPaGTG~~~-~~~~~ 1485 (1524)
T 2a6h_D 1409 AEGKTPVAWKPLLMGVTKSALSTKSWLSAASFQNTTHVLTEAAIAGKKDELIGLKENVILGRLIPAGTGSDF-VRFTQ 1485 (1524)
T ss_dssp SCSCCCCEEEECCCCHHHHHHSCSCHHHHHHSSCHHHHHHHHHHTTEEEECCSHHHHHHTTCCCSSSTTCTT-TSSCE
T ss_pred HcCCCcceeeeeeeeeeecccccCChhhhcChHHHHHHHHHHHhcCCCCCCCCcHHHeeecCCccCCcCchh-hccee
Confidence 27787877644 9999999999999999 99999864 34443
No 5
>1hqm_D DNA-directed RNA polymerase; transferase, transcription, 3D- structure; 3.30A {Thermus aquaticus} SCOP: i.8.1.1 PDB: 1i6v_D* 2gho_D
Probab=99.74 E-value=4.2e-19 Score=172.86 Aligned_cols=92 Identities=20% Similarity=0.258 Sum_probs=81.3
Q ss_pred eeccHHHHHHhhCHHHHHHHHHHHHHHhhhhcCcccchhHHHHHHHHHhhh-----------------------------
Q psy16768 32 YVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHS----------------------------- 82 (154)
Q Consensus 32 ~sNdI~~i~~~lGIEAaR~~Ii~Ei~~v~~~~Gi~Vd~rHi~LIaD~MT~~----------------------------- 82 (154)
.++|+++|++++|+||+|.+|++||++||+.||+.||+|||+||+||||++
T Consensus 1069 G~~~~~eil~v~Giea~~~~lv~EIq~vyr~QGv~I~dkHievivrqM~~kv~i~~~g~t~~l~Ge~v~~~~~~~~n~~~ 1148 (1265)
T 1hqm_D 1069 GAIDPHQLLEAKGPEAVERYLVDEIQKVYRAQGVKLHDKHIEIVVRQMLKYVEVTDPGDSPLLEGQVLEKWDVEALNERL 1148 (1265)
T ss_dssp SBSHHHHHHHTTHHHHHHHHHHHHHHHHHHTTSCCCCSSTHHHHHHHHTTEECBSSCCSSCCSCCCEEGGGTTTTTTTTT
T ss_pred cCccHHHHHHHhhHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHhcceEEecCCCcCCCCCceecHHHHHHHHHHH
Confidence 368999999999999999999999999999999999999999999999875
Q ss_pred ---------------ccchhhhcccc--------------------ccccccCCcccceeec---CCCCCchhhhhhhhh
Q psy16768 83 ---------------EFDLIIMVSKS--------------------WMLDEVKSTTARSVTP---ACEPNSHHDVKKIEF 124 (154)
Q Consensus 83 ---------------G~~R~Gm~~~~--------------------g~~D~l~svSa~Ii~G---~~GTG~~~~~~~~~~ 124 (154)
|+||++++..+ |+.|.|.|++||||+| |+|||+ ..+.+.+.
T Consensus 1149 ~~~g~~~~~~~~~llGITkasl~t~SflsaASFqeTt~vL~~AAi~gk~D~L~GlkEnVIiG~lipaGTG~-~~~~~~~~ 1227 (1265)
T 1hqm_D 1149 IAEGKVPVAWKPLLMGVTKSALSTKSWLSAASFQNTTHVLTEAAIAGKKDELIGLKENVILGRLIPAGTGS-DFVRFTQV 1227 (1265)
T ss_dssp TC---CCCCBCCCCCCTHHHHTSCSCHHHHTTSTTHHHHHHHHHHSCCCCTTCSSHHHHHHTCCCSSGGGC-TTSCCCCC
T ss_pred HhcCCCcceeeeeeecceecccccCChhhccchHHHHHHHHHHHHcCCCCcCCCcHHheeeCCcccCCcCc-hhhhccch
Confidence 27777777543 9999999999999999 999996 35555543
No 6
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=99.69 E-value=2.3e-18 Score=167.82 Aligned_cols=85 Identities=16% Similarity=0.308 Sum_probs=76.2
Q ss_pred eccHHHHHHhhCHHHHHHHHHHHHHHhhhhcCcccchhHHHHHHHHHhhh------------------------------
Q psy16768 33 VNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHS------------------------------ 82 (154)
Q Consensus 33 sNdI~~i~~~lGIEAaR~~Ii~Ei~~v~~~~Gi~Vd~rHi~LIaD~MT~~------------------------------ 82 (154)
+.|+++|++++|+||+|++|++|+|+||+.||++||+|||++|+||||++
T Consensus 1214 ~~~p~dil~v~Giea~~~ylv~Evq~VYr~QGV~IndKHIEvIvrqM~~kv~I~d~Gdt~fl~Ge~vd~~~~~~~N~~~~ 1293 (1407)
T 3lu0_D 1214 PEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELE 1293 (1407)
T ss_dssp CCCHHHHHHHSCHHHHHHHTTTTTHHHHHHHTCCCCSHHHHTTTGGGTSBCEESSCSSSCSCCCCBSHHHHHHHHHHHTT
T ss_pred CCCHHHHHHhhCHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHHHhCceEEeeCCCcccCCcceecHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999987
Q ss_pred --------------ccchhhhcccc--------------------ccccccCCcccceeec---CCCCCchh
Q psy16768 83 --------------EFDLIIMVSKS--------------------WMLDEVKSTTARSVTP---ACEPNSHH 117 (154)
Q Consensus 83 --------------G~~R~Gm~~~~--------------------g~~D~l~svSa~Ii~G---~~GTG~~~ 117 (154)
|+||+.++..+ |+.|.|.|++++||+| |+|||+..
T Consensus 1294 ~~g~~pa~~~p~llGITkasl~t~SflSaASFQeTtkvLteAAi~Gk~D~L~GlkENVIvG~lIPaGTG~~~ 1365 (1407)
T 3lu0_D 1294 ANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAY 1365 (1407)
T ss_dssp SSSCCCCCEECCCCCTTTTTTSCSCTTTGGGSSCHHHHHHHHHHTCCEECCCSSHHHHTTTCCCTTTTTSTT
T ss_pred HcCCCCceeeeeeeceeeccccCCCchhhcchhhHHHHHHHHHhcCCCCcCCCcccceEecccccCCcCchh
Confidence 15555555432 9999999999999999 99999843
No 7
>3ewt_E Tumor necrosis factor receptor superfamily member 6; calmodulin-peptide complex, FAS, death domain, calcium, calcium binding protein; 2.40A {Homo sapiens}
Probab=40.91 E-value=9.1 Score=20.99 Aligned_cols=14 Identities=29% Similarity=0.401 Sum_probs=12.0
Q ss_pred hHHHHHHHHHhhhc
Q psy16768 70 RHLSLVADYMTHSE 83 (154)
Q Consensus 70 rHi~LIaD~MT~~G 83 (154)
+||-=||+.||.+-
T Consensus 2 kyIp~IAe~M~~~~ 15 (25)
T 3ewt_E 2 KYITTIAGVMTLSQ 15 (26)
T ss_pred CchhHHHHHHhHHH
Confidence 68889999999875
No 8
>2pa2_A 60S ribosomal protein L10; QM protein, , structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Homo sapiens} SCOP: d.41.4.1
Probab=30.21 E-value=23 Score=27.06 Aligned_cols=63 Identities=16% Similarity=0.099 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHHHHhhhh----cCcccchhHHHHHHHHHhhhccchh--hhccccccccccCCcccceeec
Q psy16768 44 GIEAANRVIIREVKNVFAV----YGIEVDPRHLSLVADYMTHSEFDLI--IMVSKSWMLDEVKSTTARSVTP 109 (154)
Q Consensus 44 GIEAaR~~Ii~Ei~~v~~~----~Gi~Vd~rHi~LIaD~MT~~G~~R~--Gm~~~~g~~D~l~svSa~Ii~G 109 (154)
-|||||.++-+-+++.... -=|.|.+.|.--+=..+|.+|..|. ||.+..|..+ +--++|=.|
T Consensus 33 qIEAaRia~~R~lkr~~Gk~~~~iwIRifP~~~ir~nkmlT~kgadRlq~gMg~gkG~p~---~wvArVk~G 101 (151)
T 2pa2_A 33 ALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQ---GTVARVHIG 101 (151)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSEEEEECCSCC--------------------------------CCEEEECTT
T ss_pred HHHHHHHHHHHHHhhhcCCcCcEEEEEECCCeeEeecccccccchhhhhcccccCCCCcc---EEEEEECCC
Confidence 4899999999999975431 2357778887766666788887764 4554445555 556666666
No 9
>2l5q_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=27.22 E-value=31 Score=26.22 Aligned_cols=33 Identities=18% Similarity=0.170 Sum_probs=26.3
Q ss_pred ecCChHHHhc--cCCccccCcceeccHHHHHHhhCH
Q psy16768 12 DGINVNYISQ--YRHLLDLNKLYVNDIHYMASTYGI 45 (154)
Q Consensus 12 eG~nl~~~~~--~~d~vD~~r~~sNdI~~i~~~lGI 45 (154)
.+.-|+++|. +| ..|-+|+|+.||..+.+-|.|
T Consensus 86 s~~eL~~yf~eVLP-~yD~dRVy~SDIKKliqWYNi 120 (142)
T 2l5q_A 86 SADELHAYFAEVLP-NYDRDRVHNGDIKKLISWYNI 120 (142)
T ss_dssp CHHHHHHHHTTTCT-TCCSSSTTSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCC-CCcccccchHHHHHHHHHHHH
Confidence 3445777776 55 789999999999999988866
No 10
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=23.26 E-value=26 Score=32.94 Aligned_cols=10 Identities=60% Similarity=1.036 Sum_probs=6.1
Q ss_pred CCCCCCCCCC
Q psy16768 144 YPANHPDFIG 153 (154)
Q Consensus 144 ~~~~~~~~~~ 153 (154)
-+.|||||||
T Consensus 506 intnHpdf~~ 515 (772)
T 3zvr_A 506 MNTNHEDFIG 515 (772)
T ss_dssp CCTTCTTCCC
T ss_pred CCCCChhhhc
Confidence 3456676665
No 11
>2xqo_A Cellulosome enzyme, dockerin type I; hydrolase; HET: MSE CTR; 1.40A {Clostridium thermocellum}
Probab=21.89 E-value=1.1e+02 Score=24.49 Aligned_cols=96 Identities=11% Similarity=0.102 Sum_probs=55.7
Q ss_pred cHHHHHHhhCHHHHHHHHHHHHHHhhhhcCcccchhHHHHHHHHHhhhc-----cchhhhc--ccc--ccccccCCcccc
Q psy16768 35 DIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRHLSLVADYMTHSE-----FDLIIMV--SKS--WMLDEVKSTTAR 105 (154)
Q Consensus 35 dI~~i~~~lGIEAaR~~Ii~Ei~~v~~~~Gi~Vd~rHi~LIaD~MT~~G-----~~R~Gm~--~~~--g~~D~l~svSa~ 105 (154)
-+..+...+-+...+..|-+|| +.|-.||+++.-+.- -=-.|+. +++ .+.+. |+-++
T Consensus 45 e~ia~as~l~vseVKa~ikk~v------------DEHwDli~~~~Gf~~ke~vYAfffG~aTRESTl~a~~ET--G~nsa 110 (243)
T 2xqo_A 45 ELIARASSLKVSEVKAIIKKQV------------DEHWDVIRDVCGFKNKEVAYAFFFGMATRESTFRAATET--GSGAS 110 (243)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHH------------HHTHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTCTTCEE--CSGGG
T ss_pred HHHHHhccccHHHHHHHHHHHH------------HHHHHHHHHHhCCCchhhhhhhheecccchhhhhhhhcc--CcCcc
Confidence 3444445555555555555555 468899999876554 1112333 222 22222 88888
Q ss_pred eeecCCCCCchhhhhhhhhhccccccccccccccccCCC
Q psy16768 106 SVTPACEPNSHHDVKKIEFKKQNKILPLVLQNSLTGSSY 144 (154)
Q Consensus 106 Ii~G~~GTG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (154)
=..||.-|.--..-...+..-.+..+|---||++|-|.|
T Consensus 111 HAyGplQTAeTAfan~np~fMpE~nVPEM~QydftEsNF 149 (243)
T 2xqo_A 111 HAFGPLQTAETAYANANPNYMPEHNVPEMHQYDFTEYNF 149 (243)
T ss_dssp CEETTTTEEGGGSBTSCTTSCCCCSCTTSCCCBCCHHHH
T ss_pred ccccchHHHHHHHhhcCcccCcccCchhhheeccccccc
Confidence 889976655422222223334677888889999987643
No 12
>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=20.89 E-value=98 Score=19.49 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=18.6
Q ss_pred HHHHhhhhcCcccchhHHHHHHHHH
Q psy16768 55 EVKNVFAVYGIEVDPRHLSLVADYM 79 (154)
Q Consensus 55 Ei~~v~~~~Gi~Vd~rHi~LIaD~M 79 (154)
.|+++++.-|+.|++--+.+++..+
T Consensus 21 ~I~~il~aaGveve~~~~~~~~~~L 45 (58)
T 3a1y_A 21 NLKAVLQAAGVEPEEARIKALVAAL 45 (58)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCccHHHHHHHHHHH
Confidence 4667777778888888888877765
No 13
>3r8n_R 30S ribosomal protein S18; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_R 3fih_R* 3iy8_R 3j18_R* 2wwl_R 3oar_R 3oaq_R 3ofb_R 3ofa_R 3ofp_R 3ofx_R 3ofy_R 3ofo_R 3r8o_R 4a2i_R 4gd1_R 4gd2_R
Probab=20.38 E-value=19 Score=22.90 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=18.6
Q ss_pred ccchhHHHHHHHHHhhhc--cchh
Q psy16768 66 EVDPRHLSLVADYMTHSE--FDLI 87 (154)
Q Consensus 66 ~Vd~rHi~LIaD~MT~~G--~~R~ 87 (154)
.||++-+.+|..+++..| +.|.
T Consensus 1 ~iDYknv~lL~~Fis~~GkIlprr 24 (55)
T 3r8n_R 1 EIDYKDIATLKNYITESGKIVPSR 24 (55)
T ss_dssp CCCTTCHHHHGGGBCTTCCBCCHH
T ss_pred CCCccCHHHHHHHcCCCCCCcCcc
Confidence 489999999999999999 5544
Done!