RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16768
(154 letters)
>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 1449
Score = 93.8 bits (232), Expect = 1e-23
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 4 NGKHLLKTDGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVY 63
+ +L+TDG+N++ + + D ++Y N + GIEA + +EV NV A
Sbjct: 1300 EPEWVLETDGVNLSEVMTVPGI-DPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASD 1358
Query: 64 GIEVDPRHLSLVADYMTHS 82
G V+ RH++L+ D MT
Sbjct: 1359 GSYVNYRHMALLVDVMTTQ 1377
>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus thermophilus
[TaxId: 274]}
Length = 1504
Score = 35.5 bits (81), Expect = 0.002
Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 8 LLKTDGINVNY-ISQYRHLLDLNKLYVN----------DIHYMASTYGIEAANRVIIREV 56
++++G + Y + + LL + YV D H + G EA R ++ E+
Sbjct: 1292 FVESEGFSKEYKLPKEARLLVKDGDYVEAGQPLTRGAIDPHQLLEAKGPEAVERYLVEEI 1351
Query: 57 KNVFAVYGIEVDPRHLSLVADYMTH 81
+ V+ G+++ +H+ +V M
Sbjct: 1352 QKVYRAQGVKLHDKHIEIVVRQMMK 1376
Score = 25.9 bits (56), Expect = 3.0
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Query: 29 NKLYVNDIHYMASTYGIEAANRVIIREVKNV 59
++L + + +EA N +I E K
Sbjct: 1386 SRLLEGQV---LEKWDVEALNERLIAEGKTP 1413
>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 258
Score = 27.7 bits (61), Expect = 0.51
Identities = 12/85 (14%), Positives = 26/85 (30%), Gaps = 8/85 (9%)
Query: 52 IIREVK--------NVFAVYGIEVDPRHLSLVADYMTHSEFDLIIMVSKSWMLDEVKSTT 103
I E K + +YG+ R + ++ +YM + + + +
Sbjct: 46 FIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEM 105
Query: 104 ARSVTPACEPNSHHDVKKIEFKKQN 128
+ V A E + +N
Sbjct: 106 CKDVCEAMEYLESKQFLHRDLAARN 130
>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein
kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 288
Score = 26.5 bits (58), Expect = 1.3
Identities = 12/68 (17%), Positives = 19/68 (27%), Gaps = 4/68 (5%)
Query: 57 KNVFAVYGIEVDPRHLSLVADYMTHSEFDLIIMVSKSWMLDEVKSTTA---RSVTPACEP 113
+Y D L Y + E I S+ + TA ++
Sbjct: 68 PFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGK 127
Query: 114 N-SHHDVK 120
H D+K
Sbjct: 128 GIIHRDLK 135
>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 309
Score = 26.5 bits (58), Expect = 1.5
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 8/58 (13%)
Query: 52 IIREVK--------NVFAVYGIEVDPRHLSLVADYMTHSEFDLIIMVSKSWMLDEVKS 101
II+EV+ N G + LV +Y S DL+ + K E+ +
Sbjct: 62 IIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAA 119
>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human
(Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 26.3 bits (57), Expect = 1.9
Identities = 13/88 (14%), Positives = 30/88 (34%), Gaps = 9/88 (10%)
Query: 52 IIREVK--------NVFAVYGIEVDPRHLSLVADYMTHSEFDLIIMVSKSWMLDEVKSTT 103
I REV NV ++ + + + L+ + + E + +S +E
Sbjct: 60 IEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATE-F 118
Query: 104 ARSVTPACEPNSHHDVKKIEFKKQNKIL 131
+ + + + K +N +L
Sbjct: 119 LKQILNGVYYLHSLQIAHFDLKPENIML 146
>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein
kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 322
Score = 25.8 bits (56), Expect = 2.7
Identities = 9/57 (15%), Positives = 20/57 (35%), Gaps = 8/57 (14%)
Query: 52 IIREVK--------NVFAVYGIEVDPRHLSLVADYMTHSEFDLIIMVSKSWMLDEVK 100
IIRE++ + YG +S+ ++M D ++ + +
Sbjct: 51 IIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILG 107
>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo
sapiens) [TaxId: 9606]}
Length = 263
Score = 25.4 bits (55), Expect = 3.3
Identities = 10/75 (13%), Positives = 24/75 (32%)
Query: 57 KNVFAVYGIEVDPRHLSLVADYMTHSEFDLIIMVSKSWMLDEVKSTTARSVTPACEPNSH 116
+ +YG+ ++ + LV ++M H + + E V
Sbjct: 60 PKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEE 119
Query: 117 HDVKKIEFKKQNKIL 131
V + +N ++
Sbjct: 120 ACVIHRDLAARNCLV 134
>d1a62a1 a.140.3.1 (A:1-47) Rho termination factor, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 47
Score = 23.3 bits (51), Expect = 4.2
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 24 HLLDLNKLYVNDIHYMASTYGIEAANR 50
+L +L V+++ + G+E R
Sbjct: 2 NLTELKNTPVSELITLGENMGLENLAR 28
>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 307
Score = 25.0 bits (54), Expect = 4.7
Identities = 14/101 (13%), Positives = 33/101 (32%), Gaps = 9/101 (8%)
Query: 45 IEAANRVIIREVK--------NVFAVYGIEVDPRHLSLVADYMTHSEFDLIIMVSKSWML 96
+E + E+ N+ A+ I HL L+ ++ E I+ +
Sbjct: 47 LEGKEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTE 106
Query: 97 DEVKSTTARSVTPACEPNSHHDVKKIEFKKQNKILPLVLQN 137
+ V A + + + K +N + + ++
Sbjct: 107 RDASR-LIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDED 146
>d1eh1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermus
thermophilus [TaxId: 274]}
Length = 185
Score = 23.7 bits (51), Expect = 8.8
Identities = 12/116 (10%), Positives = 34/116 (29%), Gaps = 8/116 (6%)
Query: 12 DGINVNYISQYRHLLDLNKLYVNDIHYMASTYGIEAANRVIIREVKNVFAVYGIEVDPRH 71
+ V Y + L + + D + + A + I + +++
Sbjct: 39 LHLKVEYYGAHVPLNQIATVTAPDPRTLVVQSWDQNALKAIEKAIRDSDLGLNPSNKGDA 98
Query: 72 LSLVADYMTHSEFDLIIMVSKSWMLDE-VKSTTARSVTPACEPNSHHDVKKIEFKK 126
L + +T ++ + + + V R + +KK+ +
Sbjct: 99 LYINIPPLTEERRKDLVRAVRQYAEEGRVAIRNIRR-------EALDKLKKLAKEL 147
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.388
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 581,058
Number of extensions: 24664
Number of successful extensions: 83
Number of sequences better than 10.0: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 23
Length of query: 154
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 76
Effective length of database: 1,336,656
Effective search space: 101585856
Effective search space used: 101585856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (22.8 bits)