BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16770
(554 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 93.2 bits (230), Expect = 3e-19, Method: Composition-based stats.
Identities = 38/70 (54%), Positives = 53/70 (75%)
Query: 16 AVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAE 75
A+ DPY LGV RTAS +I+K YK+L EWHPDKN DP A+++F+Q+++AY ILS+ E
Sbjct: 14 ALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEE 73
Query: 76 RRKQYDLFGT 85
+R YD +G+
Sbjct: 74 KRTNYDHYGS 83
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 83.2 bits (204), Expect = 4e-16, Method: Composition-based stats.
Identities = 39/69 (56%), Positives = 51/69 (73%), Gaps = 1/69 (1%)
Query: 18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAER 76
S D Y+ LGVPR AS +EI+K Y +L ++HPD N +DP A+EKF QL EAY +LSD +
Sbjct: 6 SGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVK 65
Query: 77 RKQYDLFGT 85
RKQYD +G+
Sbjct: 66 RKQYDAYGS 74
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 9
Length = 88
Score = 79.7 bits (195), Expect = 3e-15, Method: Composition-based stats.
Identities = 34/71 (47%), Positives = 51/71 (71%)
Query: 22 YETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYD 81
Y+ LGVP++AS ++I+K + +L +++HPDKN P A+ KF ++ EAY LSDA RRK+YD
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYD 69
Query: 82 LFGTTDGFSGQ 92
G + SG+
Sbjct: 70 TLGHSAFTSGK 80
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 78.2 bits (191), Expect = 1e-14, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 52/72 (72%), Gaps = 1/72 (1%)
Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 79
D Y+TLG+ R AS +EI++ Y+R + +HPDKN +P A+EKF ++ EAY++LSD +R+
Sbjct: 4 DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREI 63
Query: 80 YDLFGTTDGFSG 91
+D +G +G G
Sbjct: 64 FDRYG-EEGLKG 74
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 12
Length = 78
Score = 77.8 bits (190), Expect = 1e-14, Method: Composition-based stats.
Identities = 35/68 (51%), Positives = 49/68 (72%)
Query: 18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERR 77
S D YE LGV R AS ++++K Y+RL +++HPDKN+ P A E F + AY +LS+ E+R
Sbjct: 6 SGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKR 65
Query: 78 KQYDLFGT 85
KQYD FG+
Sbjct: 66 KQYDQFGS 73
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human
Protein Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 77.0 bits (188), Expect = 3e-14, Method: Composition-based stats.
Identities = 34/69 (49%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 19 LDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN--NDPTAQEKFLQLTEAYNILSDAER 76
+D YE L VPR AS + I+K Y++L ++WHPDKN N A+ +F Q+ EAY +LSDA++
Sbjct: 9 VDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKK 68
Query: 77 RKQYDLFGT 85
R YD +G+
Sbjct: 69 RDIYDRYGS 77
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108)
Of The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 75.1 bits (183), Expect = 9e-14, Method: Composition-based stats.
Identities = 33/66 (50%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-DPTAQEKFLQLTEAYNILSDAERRK 78
D YE LGV +TA +EIRK YKRL +++HPD+N D A+ KF ++ EAY +L+D+++R
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 79 QYDLFG 84
YD +G
Sbjct: 64 AYDQYG 69
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 75.1 bits (183), Expect = 1e-13, Method: Composition-based stats.
Identities = 33/66 (50%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-DPTAQEKFLQLTEAYNILSDAERRK 78
D YE LGV +TA +EIRK YKRL +++HPD+N D A+ KF ++ EAY +L+D+++R
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 79 QYDLFG 84
YD +G
Sbjct: 64 AYDQYG 69
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 74.7 bits (182), Expect = 1e-13, Method: Composition-based stats.
Identities = 34/72 (47%), Positives = 50/72 (69%), Gaps = 3/72 (4%)
Query: 22 YETLGVPRTASLQEIRKNYKRLVVEWHPDKN--NDPTAQEKFLQLTEAYNILSDAERRKQ 79
YE L VPR+AS +I+K Y+R ++WHPDKN N A++KF ++ EAY +LSD +R+
Sbjct: 5 YEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREI 64
Query: 80 YDLFGTTDGFSG 91
YD +G +G +G
Sbjct: 65 YDRYG-REGLTG 75
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 99/214 (46%), Gaps = 26/214 (12%)
Query: 22 YETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAERRKQY 80
Y LGV +TAS +EIR+ +K+L ++ HPDKN N+P A FL++ AY +L D + RK+Y
Sbjct: 5 YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKY 64
Query: 81 DLFGTT---DGFSGQDSASRNFHNHMYNPFDDVFSEGFNFPFEEHDISLFHKLSTTHWNF 137
D +G D GQ S +++ + + +DD E E D ++ S W
Sbjct: 65 DKYGEKGLEDNQGGQ-YESWSYYRYDFGIYDDD-PEIITLERREFDAAVN---SGELW-- 117
Query: 138 EKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARR 197
+ FYS C C + P +++ E+ L + V+ +++ L R
Sbjct: 118 -------------FVNFYSPGCSHCHDLAPTWREFAKEVDGL-LRIGAVNCGDDRMLCRM 163
Query: 198 LGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEF 231
GV S P + + G + S + +V F
Sbjct: 164 KGVNS-YPSLFIFRSGMAAVKYNGDRSKESLVAF 196
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 73.9 bits (180), Expect = 2e-13, Method: Composition-based stats.
Identities = 33/66 (50%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-DPTAQEKFLQLTEAYNILSDAERRK 78
D YE LGV +TA +EIRK YKRL +++HPD+N D A+ KF ++ EAY +L+D+++R
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 79 QYDLFG 84
YD +G
Sbjct: 64 AYDQYG 69
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 68.9 bits (167), Expect = 7e-12, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 46/65 (70%), Gaps = 2/65 (3%)
Query: 22 YETLGVPRTASLQEIRKNYKRLVVEWHPDKN--NDPTAQEKFLQLTEAYNILSDAERRKQ 79
YE LGV +AS ++I+K Y++L + WHPDKN N A++KF ++EAY +LSD+++R
Sbjct: 12 YEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSL 71
Query: 80 YDLFG 84
YD G
Sbjct: 72 YDRAG 76
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 56/91 (61%), Gaps = 3/91 (3%)
Query: 22 YETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAERRKQY 80
Y LGV +TAS +EIR+ +K+L ++ HPDKN N+P A FL++ AY +L D + RK+Y
Sbjct: 24 YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKY 83
Query: 81 DLFGTT--DGFSGQDSASRNFHNHMYNPFDD 109
D +G + G S +++ + + +DD
Sbjct: 84 DKYGEKGLEDNQGGQYESWSYYRYDFGIYDD 114
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like
Domain From Homo Sapiens
Length = 71
Score = 65.9 bits (159), Expect = 6e-11, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 45/60 (75%), Gaps = 2/60 (3%)
Query: 22 YETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYD 81
Y+ LGV A+ +E++K Y++L +++HPDKN P EKF Q+++AY +LSDA++R+ YD
Sbjct: 9 YDVLGVKPNATQEELKKAYRKLALKYHPDKN--PNEGEKFKQISQAYEVLSDAKKRELYD 66
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 59/114 (51%), Gaps = 10/114 (8%)
Query: 9 NVLFINCAVSL-DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEA 67
N+ F + A+ L D Y LGV T L+ I+ Y+RL ++HPD + + A+ KF L EA
Sbjct: 17 NLYFQSNAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEA 76
Query: 68 YNILSDAERRKQYDLF---GTTDGFSGQDSASRNFHNHMYNP--FDDVFSEGFN 116
+ +L D +RR +YD GF Q R H Y+ FDD+FS F
Sbjct: 77 WEVLKDEQRRAEYDQLWQHRNDPGFGRQ----RQTHEQSYSQQDFDDIFSSMFG 126
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 63.2 bits (152), Expect = 4e-10, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 22 YETLGVPRTASLQEIRKNYKRLVVEWHPDKNND-PTAQEKFLQLTEAYNILSDAERRKQY 80
Y LG+ + A+ +I+K+Y++L +++HPDKN D P A +KF ++ A+ IL+DA +R Y
Sbjct: 20 YHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIY 79
Query: 81 DLFGTTDGFSGQDSASRNFHNH 102
D +G+ + + N + +
Sbjct: 80 DKYGSLGLYVAEQFGEENVNTY 101
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 44/63 (69%), Gaps = 2/63 (3%)
Query: 22 YETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYD 81
Y+ LGV AS E++K Y+++ +++HPDKN P E+F Q+++AY +LSD ++R+ YD
Sbjct: 11 YDVLGVKPDASDNELKKAYRKMALKFHPDKN--PDGAEQFKQISQAYEVLSDEKKRQIYD 68
Query: 82 LFG 84
G
Sbjct: 69 QGG 71
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 59.7 bits (143), Expect = 4e-09, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 41/62 (66%)
Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 79
D Y +GV T L+ I+ Y+RL ++HPD + +P A+ +F ++ EA+ +LSD +RR +
Sbjct: 6 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 65
Query: 80 YD 81
YD
Sbjct: 66 YD 67
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 45/63 (71%), Gaps = 2/63 (3%)
Query: 22 YETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYD 81
Y+ LGV +A+ QE++K Y++ +++HPDK T EKF +++EA+ IL+D ++R+ YD
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDT--EKFKEISEAFEILNDPQKREIYD 68
Query: 82 LFG 84
+G
Sbjct: 69 QYG 71
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human
Williams- Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 22 YETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-DPTAQEKFLQLTEAYNILSDAERRKQY 80
Y+ LGVP TA+ +I+ Y R +HPD+N+ A E+F ++++AY +L A R++Y
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKY 79
Query: 81 D 81
D
Sbjct: 80 D 80
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDK----NNDPTAQEKFLQLTEAYNILSDAE 75
D Y+ LGV R A QEI K Y++L ++WHPD A++KF+ + A +LSD E
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 76 RRKQYD 81
RK++D
Sbjct: 443 XRKKFD 448
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDK----NNDPTAQEKFLQLTEAYNILSDAE 75
D Y+ LGV R A QEI K Y++L ++WHPD A++KF+ + A +LSD E
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 76 RRKQYD 81
RK++D
Sbjct: 443 MRKKFD 448
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like
Protein
Length = 94
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 43/70 (61%), Gaps = 7/70 (10%)
Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPT-------AQEKFLQLTEAYNILS 72
D Y LG +A++ ++++ Y++L++ +HPDK + +KF+++ +A+ IL
Sbjct: 17 DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG 76
Query: 73 DAERRKQYDL 82
+ E +K+YDL
Sbjct: 77 NEETKKKYDL 86
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 45/70 (64%), Gaps = 7/70 (10%)
Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDP----TAQE---KFLQLTEAYNILS 72
D Y LG +A++ ++++ Y++L++ +HPDK + T +E KF+++ +A+ IL
Sbjct: 11 DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILG 70
Query: 73 DAERRKQYDL 82
+ E +++YDL
Sbjct: 71 NEETKREYDL 80
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 135 WNFEKNYIPKSYT----TPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN 190
+NFEKN P+ + P ++ FY+DWC C V PI +L E V + V
Sbjct: 24 YNFEKN--PEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIV-IYKVDTEK 80
Query: 191 EQGLARRLGVGSQLPQIALL-TDGRTSFFK--EPSFSVQKMVEFFRLK 235
EQ LA G+ S +P I + +G+ + P S +K ++ F LK
Sbjct: 81 EQELAGAFGIRS-IPSILFIPMEGKPEMAQGAMPKASFKKAIDEFLLK 127
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
C Menber 12
Length = 112
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAERRK 78
D Y LG +S+++I +K +E HPDK+ +P A E F +L +A IL++ E R
Sbjct: 21 DYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRA 80
Query: 79 QYD 81
+YD
Sbjct: 81 RYD 83
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALL 210
+I F++ WC C + P+F+K+ D + VGF+ V V + +A+ +G+ + +P
Sbjct: 37 VIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGIRA-MPTFVFF 95
Query: 211 TDGR 214
+G+
Sbjct: 96 KNGQ 99
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 149 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI 207
P ++ FY+DWC C V PI ++L E + + + V+V E LAR G+ S +P I
Sbjct: 53 PAIVDFYADWCGPCKMVAPILEELSKEYAG-KIYIYKVNVDKEPELARDFGIQS-IPTI 109
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 149 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGV 200
P ++ FY+DWC C V PI ++L E + + + V+V E LAR G+
Sbjct: 53 PAIVDFYADWCGPCKMVAPILEELSKEYAG-KIYIYKVNVDKEPELARDFGI 103
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human
Ras- Associated Protein Rap1
Length = 90
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNIL 71
S D ++ LGV AS E+ K Y++L V HPDK P +++ F + A L
Sbjct: 26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTAL 79
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---HVHNEQGLARRLGVGSQLPQI 207
L+ F+++WC C + PI ++ DE G TV ++ G A + G+ +P +
Sbjct: 34 LVDFWAEWCGPCKMIAPILDEIADEYQ----GKLTVAKLNIDQNPGTAPKYGI-RGIPTL 88
Query: 208 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL 236
L +G + K + S ++ EF L
Sbjct: 89 LLFKNGEVAATKVGALSKGQLKEFLDANL 117
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 37.7 bits (86), Expect = 0.017, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 154 FYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDG 213
F + WC C ++P F L ++ S V F V V + Q +A + G+ +P + L +G
Sbjct: 27 FSATWCGPCKMIKPFFHSLSEKYS--NVIFLEVDVDDAQDVAPKYGI-RGIPTLLLFKNG 83
Query: 214 RTSFFKEPSFSVQKMVEFFRLKL 236
+ K + S ++ EF L
Sbjct: 84 EVAATKVGALSKGQLKEFLDANL 106
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---HVHNEQGLARRLGVGSQLPQI 207
L+ F+++WC C + PI ++ DE G TV ++ G A + G+ S +P +
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQ----GKLTVAKLNIDQNPGTAPKYGIRS-IPTL 78
Query: 208 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL 236
L +G + K + S ++ EF L
Sbjct: 79 LLFKNGEVAATKVGALSKGQLKEFLDANL 107
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 154 FYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDG 213
F+++WC CL + P+ ++L ++ V F ++ Q +A R G+ S LP I +G
Sbjct: 30 FWAEWCAPCLILAPVIEELANDYP--QVAFGKLNTEESQDIAMRYGIMS-LPTIMFFKNG 86
Query: 214 R 214
Sbjct: 87 E 87
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 151 LILFYSDWCFACLQVEPIFKKLMDELSPLG--VGFFTVHVHNEQGLARRLGVGSQLPQIA 208
L+ FY+ WC C ++ P ++K ELS + V E LA+R V S P +
Sbjct: 151 LVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDV-SGYPTLK 209
Query: 209 LLTDGRTSFFKEP 221
+ GR + P
Sbjct: 210 IFRKGRPYDYNGP 222
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 151 LILFYSDWCFACLQVEPIFKK----LMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQ 206
L+ FY+ WC C Q P ++K L D+ P+ V + + LA R V S P
Sbjct: 36 LLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVA--KIDATSASVLASRFDV-SGYPT 92
Query: 207 IALLTDGRT 215
I +L G+
Sbjct: 93 IKILKKGQA 101
>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of
Human Thioredoxin-Related Transmembrane Protein
Length = 126
Score = 37.0 bits (84), Expect = 0.032, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALL 210
+I FY+ WC AC ++P ++ + L V V V + GL+ R + + LP I
Sbjct: 26 MIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFIINA-LPTIYHC 84
Query: 211 TDGRTSFFKEPSFSVQKMVEFFRLKLPYKLIVPLSA 246
DG ++ P + + + F K +K I P+S+
Sbjct: 85 KDGEFRRYQGPR-TKKDFINFISDK-EWKSIEPVSS 118
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 36.6 bits (83), Expect = 0.036, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 154 FYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDG 213
F+++WC CL + PI ++L ++ VGF ++ +A R GV S LP + DG
Sbjct: 23 FWAEWCAPCLILAPIIEELAEDYPQ--VGFGKLNSDENPDIAARYGVMS-LPTVIFFKDG 79
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
Length = 108
Score = 36.6 bits (83), Expect = 0.038, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---HVHNEQGLARRLGVGSQLPQI 207
L+ F+++WC C + PI +++ DE G TV ++ G A + G+ +P +
Sbjct: 24 LVDFWAEWCGPCKMIAPILEEIADEYQ----GKLTVAKLNIDQNPGTAPKYGI-RGIPTL 78
Query: 208 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL 236
L +G + K + S ++ EF L
Sbjct: 79 LLFKNGEVAATKVGALSKGQLKEFLDANL 107
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 36.2 bits (82), Expect = 0.051, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---HVHNEQGLARRLGVGSQLPQI 207
L+ F+++WC C + PI ++ DE G TV ++ G A + G+ +P +
Sbjct: 24 LVDFWAEWCVWCKMIAPILDEIADEYQ----GKLTVAKLNIDQNPGTAPKYGI-RGIPTL 78
Query: 208 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL 236
L +G + K + S ++ EF L
Sbjct: 79 LLFKNGEVAATKVGALSKGQLKEFLDANL 107
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 35.8 bits (81), Expect = 0.059, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---HVHNEQGLARRLGVGSQLPQI 207
L+ F+++WC C + PI ++ DE G TV ++ G A + G+ +P +
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQ----GKLTVAKLNIDQNPGTAPKYGI-RGIPTL 78
Query: 208 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL 236
L +G + K + S ++ EF L
Sbjct: 79 LLFKNGEVAATKVGALSKGQLKEFLDANL 107
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 35.8 bits (81), Expect = 0.059, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---HVHNEQGLARRLGVGSQLPQI 207
L+ F+++WC C + PI ++ DE G TV ++ G A + G+ +P +
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQ----GKLTVAKLNIDQNPGTAPKYGI-RGIPTL 78
Query: 208 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL 236
L +G + K + S ++ EF L
Sbjct: 79 LLFKNGEVAATKVGALSKGQLKEFLDANL 107
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
Length = 108
Score = 35.8 bits (81), Expect = 0.059, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---HVHNEQGLARRLGVGSQLPQI 207
L+ F+++WC C + PI ++ DE G TV ++ G A + G+ +P +
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQ----GKLTVAKLNIDQNPGTAPKYGI-RGIPTL 78
Query: 208 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL 236
L +G + K + S ++ EF L
Sbjct: 79 LLFKNGEVAATKVGALSKGQLKEFLDANL 107
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
Length = 108
Score = 35.8 bits (81), Expect = 0.059, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---HVHNEQGLARRLGVGSQLPQI 207
L+ F+++WC C + PI ++ DE G TV ++ G A + G+ +P +
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQ----GKLTVAKLNIDQNPGTAPKYGI-RGIPTL 78
Query: 208 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL 236
L +G + K + S ++ EF L
Sbjct: 79 LLFKNGEVAATKVGALSKGQLKEFLDANL 107
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 35.8 bits (81), Expect = 0.059, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---HVHNEQGLARRLGVGSQLPQI 207
L+ F+++WC C + PI ++ DE G TV ++ G A + G+ +P +
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQ----GKLTVAKLNIDQNPGTAPKYGI-RGIPTL 78
Query: 208 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL 236
L +G + K + S ++ EF L
Sbjct: 79 LLFKNGEVAATKVGALSKGQLKEFLDANL 107
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 35.8 bits (81), Expect = 0.059, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---HVHNEQGLARRLGVGSQLPQI 207
L+ F+++WC C + PI ++ DE G TV ++ G A + G+ +P +
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQ----GKLTVAKLNIDQNPGTAPKYGI-RGIPTL 78
Query: 208 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL 236
L +G + K + S ++ EF L
Sbjct: 79 LLFKNGEVAATKVGALSKGQLKEFLDANL 107
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 35.8 bits (81), Expect = 0.059, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---HVHNEQGLARRLGVGSQLPQI 207
L+ F+++WC C + PI ++ DE G TV ++ G A + G+ +P +
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQ----GKLTVAKLNIDQNPGTAPKYGI-RGIPTL 78
Query: 208 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL 236
L +G + K + S ++ EF L
Sbjct: 79 LLFKNGEVAATKVGALSKGQLKEFLDANL 107
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 35.8 bits (81), Expect = 0.064, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---HVHNEQGLARRLGVGSQLPQI 207
L+ F+++WC C + PI ++ DE G TV ++ G A + G+ +P +
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQ----GKLTVAKLNIDQNPGTAPKYGI-RGIPTL 78
Query: 208 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL 236
L +G + K + S ++ EF L
Sbjct: 79 LLFKNGEVAACKVGALSKGQLKEFLDANL 107
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 35.8 bits (81), Expect = 0.067, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---HVHNEQGLARRLGVGSQLPQI 207
L+ F+++WC C + PI ++ DE G TV ++ G A + G+ +P +
Sbjct: 24 LVDFWAEWCGPCEMIAPILDEIADEYQ----GKLTVAKLNIDQNPGTAPKYGI-RGIPTL 78
Query: 208 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL 236
L +G + K + S ++ EF L
Sbjct: 79 LLFKNGEVAATKVGALSKGQLKEFLDANL 107
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 35.4 bits (80), Expect = 0.075, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---HVHNEQGLARRLGVGSQLPQI 207
L+ F+++WC C + PI ++ DE G TV ++ G A + G+ +P +
Sbjct: 24 LVDFWAEWCGHCKMIAPILDEIADEYQ----GKLTVAKLNIDQNPGTAPKYGI-RGIPTL 78
Query: 208 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL 236
L +G + K + S ++ EF L
Sbjct: 79 LLFKNGEVAATKVGALSKGQLKEFLDANL 107
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 35.4 bits (80), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 144 KSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQ 203
+ + P +I+F WC C +++P F+++ ++ + F + + + L + +
Sbjct: 14 RQHPDPIIIMFTGSWCQPCKKMKPTFEEMASQMEG-DIRFAYMDAEDAEKTMAELNIRT- 71
Query: 204 LPQIALLTDG 213
LP +AL DG
Sbjct: 72 LPSLALFVDG 81
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
Length = 108
Score = 35.4 bits (80), Expect = 0.091, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---HVHNEQGLARRLGVGSQLPQI 207
L+ F+++WC C + PI + DE G TV ++ G A + G+ +P +
Sbjct: 24 LVDFWAEWCGPCKMIAPILDDIADEYQ----GKLTVAKLNIDQNPGTAPKYGI-RGIPTL 78
Query: 208 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL 236
L +G + K + S ++ EF L
Sbjct: 79 LLFKNGEVAATKVGALSKGQLKEFLDANL 107
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
Length = 108
Score = 35.4 bits (80), Expect = 0.091, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---HVHNEQGLARRLGVGSQLPQI 207
L+ F+++WC C + PI ++ DE G TV ++ G A + G+ +P +
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQ----GKLTVAKLNIDQNPGTAPKYGI-RGIPTL 78
Query: 208 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL 236
L +G + K + S ++ EF L
Sbjct: 79 LLFKNGDVAATKVGALSKGQLKEFLDANL 107
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 35.4 bits (80), Expect = 0.093, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 149 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIA 208
P +I F++ WC C PIF + E + V F V+ E L+ R + S +P I
Sbjct: 57 PXVIDFWAPWCGPCRSFAPIFAETAAERAG-KVRFVKVNTEAEPALSTRFRIRS-IPTIX 114
Query: 209 LLTDGR 214
L +G+
Sbjct: 115 LYRNGK 120
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---HVHNEQGLARRLGVGSQLPQI 207
L+ F+++WC C + PI ++ DE G TV ++ G A + G+ P +
Sbjct: 25 LVDFWAEWCGPCKMIAPILDEIADEYQ----GKLTVAKLNIDQNPGTAPKYGIRGT-PTL 79
Query: 208 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL 236
L +G + K + S ++ EF L
Sbjct: 80 LLFKNGEVAATKVGALSKGQLKEFLDANL 108
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 6/95 (6%)
Query: 120 EEHDISLFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPL 179
EE + H + T +FEK K ++ F + WC C + PIF +L +
Sbjct: 2 EEGQVIACHTVDTWKEHFEKG---KGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-- 56
Query: 180 GVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGR 214
V F V V + +A V +P L DG+
Sbjct: 57 NVTFLKVDVDELKAVAEEWNV-EAMPTFIFLKDGK 90
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 34.7 bits (78), Expect = 0.13, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 151 LILFYSDWCFACLQVEPIFKKLM-DELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIAL 209
L+ F++ WC C V PI ++L D L V V+V GLA R GV S +P + L
Sbjct: 54 LVDFFAPWCGPCRLVSPILEELARDHAGRLKV--VKVNVDEHPGLAARYGVRS-VPTLVL 110
Query: 210 LTDG 213
G
Sbjct: 111 FRRG 114
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 6/98 (6%)
Query: 119 FEEHDISLFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSP 178
FE D S+F + H + PK L+L+Y+ WC C ++ P +++L D +
Sbjct: 353 FENQDSSVFQLVGKNHDEIVND--PKKDV---LVLYYAPWCGHCKRLAPTYQELADTYAN 407
Query: 179 LGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTS 216
+ + + R + V P I L G+ S
Sbjct: 408 ATSDVLIAKLDHTENDVRGV-VIEGYPTIVLYPGGKKS 444
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---HVHNEQGLARRLGVGSQLPQI 207
L+ F+++WC C + PI ++ D+ G TV ++ G A + G+ +P +
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADDYQ----GKLTVAKLNIDQNPGTAPKYGI-RGIPTL 78
Query: 208 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL 236
L +G + K + S ++ EF L
Sbjct: 79 LLFKNGEVAATKVGALSKGQLKEFLDANL 107
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 151 LILFYSDWCFACLQVEPIFKKLMDELS 177
LI FY+ WC C +EP +K+L ++LS
Sbjct: 374 LIEFYAPWCGHCKNLEPKYKELGEKLS 400
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
Length = 108
Score = 34.3 bits (77), Expect = 0.21, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---HVHNEQGLARRLGVGSQLPQI 207
L+ F+++WC C + PI ++ +E G TV ++ G A + G+ +P +
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIAEEYQ----GKLTVAKLNIDQNPGTAPKYGI-RGIPTL 78
Query: 208 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL 236
L +G + K + S ++ EF L
Sbjct: 79 LLFKNGEVAATKVGALSKGQLKEFLDANL 107
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 33.9 bits (76), Expect = 0.22, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 151 LILFYSDWCFACLQVEPIFKKLMDELSPLG--VGFFTVHVHNEQGLARRLGVGSQLPQIA 208
L+ FY+ WC C ++ P ++K ELS + V + LA+R V S P +
Sbjct: 28 LVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATEQTDLAKRFDV-SGYPTLK 86
Query: 209 LLTDGRTSFFKEP 221
+ GR + P
Sbjct: 87 IFRKGRPFDYNGP 99
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 33.9 bits (76), Expect = 0.23, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 22 YETLGVPRTA-SLQEIRKNYKRLVVEWHPD----KNNDPTAQEKFLQLTEAYNILSDAER 76
Y+ L V R Q++ K Y+ L + HPD K A+E+F + AY L D E
Sbjct: 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEA 77
Query: 77 RKQYDLF 83
+ YD +
Sbjct: 78 KTNYDYY 84
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 33.1 bits (74), Expect = 0.39, Method: Composition-based stats.
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 10/103 (9%)
Query: 120 EEHDISLFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPL 179
EE D H L NF + Y L+ FY+ WC C + P + K +L
Sbjct: 4 EEED----HVLVLRKSNFAEALAAHKYL---LVEFYAPWCGHCKALAPEYAKAAGKLKAE 56
Query: 180 G--VGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKE 220
G + V E LA++ GV P I +G T+ KE
Sbjct: 57 GSEIRLAKVDATEESDLAQQYGV-RGYPTIKFFRNGDTASPKE 98
>pdb|2PF4|E Chain E, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
pdb|2PF4|F Chain F, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
pdb|2PF4|G Chain G, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
pdb|2PF4|H Chain H, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
Length = 174
Score = 33.1 bits (74), Expect = 0.42, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 13 INCAVSLDPYETLGVPRTA--SLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNI 70
+N SL + LG+ R+A ++ +RK Y + E+HPDK D +EK ++ Y
Sbjct: 5 LNREESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKK 61
Query: 71 LSDAERRKQYDLFG 84
+ D + FG
Sbjct: 62 MEDGVKYAHQPDFG 75
>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|B Chain B, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|C Chain C, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|D Chain D, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
Length = 108
Score = 32.7 bits (73), Expect = 0.55, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---HVHNEQGLARRLGVGSQLPQI 207
L+ F+++WC + PI ++ DE G TV ++ G A + G+ +P +
Sbjct: 24 LVDFWAEWCACAKMIAPILDEIADEYQ----GKLTVAKLNIDQNPGTAPKYGI-RGIPTL 78
Query: 208 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL 236
L +G + K + S ++ EF L
Sbjct: 79 LLFKNGEVAATKVGALSKGQLKEFLDANL 107
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 32.7 bits (73), Expect = 0.55, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---HVHNEQGLARRLGVGSQLPQI 207
L+ F+++WC C + PI ++ DE G TV ++ G A + + +P +
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQ----GKLTVAKLNIDQNPGTAPKY-IERGIPTL 78
Query: 208 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL 236
L +G + K + S ++ EF L
Sbjct: 79 LLFKNGEVAATKVGALSKGQLKEFLDANL 107
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 32.3 bits (72), Expect = 0.67, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---HVHNEQGLARRLGVGSQLPQI 207
L+ F+++WC C + PI ++ DE G TV ++ G A + G+ +P +
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQ----GKLTVAKLNIDQNPGTAPKYGI-RGIPTL 78
Query: 208 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL 236
L +G + K + S ++ F L
Sbjct: 79 LLFKNGEVAATKVGALSKGQLKCFLDCNL 107
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 32.3 bits (72), Expect = 0.71, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---HVHNEQGLARRLGVGSQLPQI 207
L+ F+++WC C + PI ++ DE G TV ++ G A + G+ +P +
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQ----GKLTVAKLNIDQNPGTAPKYGI-RGIPTL 78
Query: 208 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL 236
L +G + K + S ++ F L
Sbjct: 79 LLFKNGEVAATKVGALSKGQLKCFLDANL 107
>pdb|3UO2|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
pdb|3UO2|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
Length = 175
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 36 IRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQY 80
+RK Y++L + HPD + Q L +AY+ L D RR QY
Sbjct: 27 LRKEYRQLQAQHHPDMAQQGSEQSST--LNQAYHTLKDPLRRSQY 69
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 32.3 bits (72), Expect = 0.72, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 151 LILFYSDWCFACLQVEPIFKKL 172
LI FY+ WC C Q+EPI+ L
Sbjct: 29 LIEFYAPWCGHCKQLEPIYTSL 50
>pdb|3UO3|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
pdb|3UO3|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
Length = 181
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 36 IRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQY 80
+RK Y++L + HPD + Q L +AY+ L D RR QY
Sbjct: 35 LRKEYRQLQAQHHPDMAQQGSEQSST--LNQAYHTLKDPLRRSQY 77
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 128
Score = 32.0 bits (71), Expect = 0.81, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---HVHNEQGLARRLGVGSQLPQI 207
L+ F+++WC + PI ++ DE G TV ++ G A + G+ +P +
Sbjct: 44 LVDFWAEWCGPAKMIAPILDEIADEYQ----GKLTVAKLNIDQNPGTAPKYGI-RGIPTL 98
Query: 208 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL 236
L +G + K + S ++ EF L
Sbjct: 99 LLFKNGEVAATKVGALSKGQLKEFLDANL 127
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 32.0 bits (71), Expect = 0.83, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 154 FYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDG 213
F++ WC C + P+FK+L ++ + F V V + AR+ + S +P + +G
Sbjct: 31 FFATWCGPCKTIAPLFKELSEKYDAI---FVKVDVDKLEETARKYNI-SAMPTFIAIKNG 86
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Human Protein Disulfide-Isomerase A3
Length = 142
Score = 32.0 bits (71), Expect = 0.84, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 151 LILFYSDWCFACLQVEPIFKKLMDELS 177
LI FY+ WC C +EP +K+L ++LS
Sbjct: 49 LIEFYAPWCGHCKNLEPKYKELGEKLS 75
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 32.0 bits (71), Expect = 0.94, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---HVHNEQGLARRLGVGSQLPQI 207
L+ F+++WC + PI ++ DE G TV ++ G A + G+ +P +
Sbjct: 24 LVDFWAEWCGPSKMIAPILDEIADEYQ----GKLTVAKLNIDQNPGTAPKYGI-RGIPTL 78
Query: 208 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL 236
L +G + K + S ++ EF L
Sbjct: 79 LLFKNGEVAATKVGALSKGQLKEFLDANL 107
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 154 FYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDG 213
F++ WC C + P+FK+L ++ + F V V + AR+ + S +P + +G
Sbjct: 40 FFATWCGPCKTIAPLFKELSEKYDAI---FVKVDVDKLEETARKYNI-SAMPTFIAIKNG 95
>pdb|4B1B|A Chain A, Crystal Structure Of Plasmodium Falciparum Oxidised
Thioredoxin Reductase At 2.9 Angstrom
pdb|4B1B|B Chain B, Crystal Structure Of Plasmodium Falciparum Oxidised
Thioredoxin Reductase At 2.9 Angstrom
Length = 542
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 11/83 (13%)
Query: 417 VNALTSPEDSSEISLHIAAMWRMDYKKIKYGWLLGDAVDDWKDYNTTKDRLDAGLRSLVN 476
VN P+ + H+ +++++D K YGW + DWK TT + + +RSL
Sbjct: 90 VNVGCVPKKLMHYAGHMGSIFKLDSKA--YGWKFDNLKHDWKKLVTT---VQSHIRSL-- 142
Query: 477 DPYNNLLYDTALKEISDEYIQSL 499
N Y T L+ +YI L
Sbjct: 143 ----NFSYMTGLRSSKVKYINGL 161
>pdb|1GH6|A Chain A, Retinoblastoma Pocket Complexed With Sv40 Large T
Antigen
Length = 114
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 18 SLDPYETLGVPRTA--SLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAE 75
SL + LG+ R+A ++ +RK Y + E+HPDK D +EK ++ Y + D
Sbjct: 7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGV 63
Query: 76 RRKQYDLFG 84
+ FG
Sbjct: 64 KYAHQPDFG 72
>pdb|3RHB|A Chain A, Crystal Structure Of The Apo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
Length = 113
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 8/47 (17%)
Query: 142 IPKSYTTPHLILFYSDWCFACLQVEPIFKKL--------MDELSPLG 180
I K+ T ++++ WC C +V+ +FK+L +D+L P G
Sbjct: 12 IRKTVTENTVVIYSKTWCSYCTEVKTLFKRLGVQPLVVELDQLGPQG 58
>pdb|3QOU|A Chain A, Crystal Structure Of E. Coli Ybbn
Length = 287
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 139 KNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRL 198
+ + +S TTP L F+S+ CLQ+ PI + L + + + + EQ +A +
Sbjct: 18 QQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFI-LAKLDCDAEQMIAAQF 76
Query: 199 GVGSQLPQIALLTDGR 214
G+ + +P + L +G+
Sbjct: 77 GLRA-IPTVYLFQNGQ 91
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 130 LSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDE 175
+ T NFE+ + P L+ F++ WC C + PI ++L E
Sbjct: 4 IEVTDENFEQEVLKSD--KPVLVDFWAPWCGPCRMIAPIIEELAKE 47
>pdb|3QDN|A Chain A, Putative Thioredoxin Protein From Salmonella Typhimurium
pdb|3QDN|B Chain B, Putative Thioredoxin Protein From Salmonella Typhimurium
Length = 287
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 139 KNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRL 198
+ + +S TTP L F+S+ CLQ+ P+ + L + + + EQ +A +
Sbjct: 18 QQTLEQSXTTPVLFYFWSERSQHCLQLTPVLESLAAQYHGQFI-LAKLDCDAEQXIAAQF 76
Query: 199 GVGSQLPQIALLTDGR 214
G+ + +P + L +G+
Sbjct: 77 GLRA-IPTVYLFQNGQ 91
>pdb|2XSA|A Chain A, Ogoga Apostructure
pdb|2XSB|A Chain A, Ogoga Pugnac Complex
Length = 447
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
Query: 294 VYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTLP 353
+Y +D V R++VP D L E +D +A + + + D+T ++P
Sbjct: 35 IYGPKDDVHVRARWRVPYDAAGLARLTELRDAAAARGMVFYVSLAPCLDVTYSDPQ---D 91
Query: 354 RISSQSMLDAVCPVKKLCVVLFSEDSPE--HDASRHTLRRFAQESRFVHNNI 403
R + + +D + +VL +D P +A RH FA+ + N +
Sbjct: 92 RAALLARVDQLARAGLRNLVLLFDDIPSVLPEADRHRFDSFAEAQADLSNMV 143
>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|B Chain B, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|C Chain C, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
Length = 109
Score = 29.6 bits (65), Expect = 4.8, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALL 210
L+ +++WC C EPI+KK+ ++ V F ++V Q +A + V +P +
Sbjct: 25 LVDCWAEWCAPCHLYEPIYKKVAEKYKGKAV-FGRLNVDENQKIADKYSV-LNIPTTLIF 82
Query: 211 TDGR 214
+G+
Sbjct: 83 VNGQ 86
>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44
Length = 382
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 151 LILFYSDWCFACLQVEPIFKKLMDEL-----SPLGVGFFTVHVHNEQGLARRLGVGSQLP 205
L+ FY+DWC + PIF++ D + + V F V +A+R + S+ P
Sbjct: 26 LVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRI-SKYP 84
Query: 206 QIALLTDG 213
+ L +G
Sbjct: 85 TLKLFRNG 92
>pdb|2K54|A Chain A, Solution Nmr Structure Of Protein Atu0742 From
Agrobacterium Tumefaciens. Northeast Structural Genomics
Consortium (Nesg0) Target Att8. Ontario Center For
Structural Proteomics Target Atc0727
Length = 123
Score = 29.3 bits (64), Expect = 6.2, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 15/104 (14%)
Query: 234 LKLPY-KLIVPLSATNVDAFLDNWREDNKVHA----LLFQRSLPVRLRYLINAFKHR--- 285
++LP K + +A ++DAF+ W +D + +A LL + +R+R+ I FK
Sbjct: 5 IELPVQKQLEAYNARDIDAFMAWWADDCQYYAFPATLLAGNAAEIRVRH-IERFKEPDLY 63
Query: 286 ----TTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDR 325
T ++ G +V D E + F K G+ D I++ + R
Sbjct: 64 GELLTRVIVGNVVIDHETVTRNFPEGK--GEVDVACIYEVENGR 105
>pdb|1IUR|A Chain A, Dnaj Domain Of Human Kiaa0730 Protein
Length = 88
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 35 EIRKNYKRLVVEWHPDKN--NDPTAQEKFLQLTEAYNILS 72
E +K +RL ++WHPDKN N A E F L N L
Sbjct: 32 ERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLE 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,604,351
Number of Sequences: 62578
Number of extensions: 710734
Number of successful extensions: 1844
Number of sequences better than 100.0: 92
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 1783
Number of HSP's gapped (non-prelim): 94
length of query: 554
length of database: 14,973,337
effective HSP length: 104
effective length of query: 450
effective length of database: 8,465,225
effective search space: 3809351250
effective search space used: 3809351250
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)