Query psy16770
Match_columns 554
No_of_seqs 445 out of 3821
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 21:35:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16770.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16770hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0190|consensus 100.0 9.6E-42 2.1E-46 352.8 22.6 349 125-508 23-380 (493)
2 TIGR01130 ER_PDI_fam protein d 100.0 2.6E-31 5.7E-36 286.3 26.6 347 128-508 2-360 (462)
3 KOG4277|consensus 100.0 2.6E-31 5.7E-36 251.5 20.3 296 145-474 41-350 (468)
4 PTZ00102 disulphide isomerase; 100.0 5E-29 1.1E-33 269.8 25.8 335 127-507 32-370 (477)
5 PF01216 Calsequestrin: Calseq 99.9 5.9E-25 1.3E-29 213.9 22.4 327 127-480 34-373 (383)
6 KOG0912|consensus 99.9 4.6E-24 9.9E-29 203.3 18.2 315 132-480 1-324 (375)
7 COG0484 DnaJ DnaJ-class molecu 99.9 5.4E-25 1.2E-29 220.9 10.0 73 17-89 2-75 (371)
8 KOG0713|consensus 99.9 1.1E-24 2.3E-29 212.6 8.8 176 8-208 5-184 (336)
9 cd03006 PDI_a_EFP1_N PDIa fami 99.8 5.4E-21 1.2E-25 164.2 7.8 102 128-232 10-113 (113)
10 KOG0712|consensus 99.8 7.3E-21 1.6E-25 188.6 8.8 115 17-140 2-117 (337)
11 PRK14296 chaperone protein Dna 99.8 8.6E-20 1.9E-24 189.1 11.1 70 18-87 3-72 (372)
12 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 5.2E-20 1.1E-24 155.9 7.4 100 128-232 2-101 (101)
13 cd02963 TRX_DnaJ TRX domain, D 99.8 8.2E-20 1.8E-24 157.4 8.7 107 127-234 4-110 (111)
14 PRK14288 chaperone protein Dna 99.8 1E-19 2.3E-24 188.5 9.0 70 18-87 2-72 (369)
15 KOG0191|consensus 99.8 2.5E-18 5.4E-23 180.5 18.1 210 129-350 31-254 (383)
16 cd03007 PDI_a_ERp29_N PDIa fam 99.8 1.3E-19 2.7E-24 154.8 6.3 98 129-235 3-115 (116)
17 PF00085 Thioredoxin: Thioredo 99.8 5.2E-19 1.1E-23 149.8 9.3 103 129-235 1-103 (103)
18 cd03065 PDI_b_Calsequestrin_N 99.8 5.5E-19 1.2E-23 152.8 8.8 105 128-236 10-119 (120)
19 PRK14298 chaperone protein Dna 99.8 5.8E-19 1.3E-23 183.3 10.4 70 18-87 4-73 (377)
20 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 4.6E-19 1E-23 150.9 7.5 100 129-232 3-104 (104)
21 PRK14287 chaperone protein Dna 99.8 6.2E-19 1.3E-23 182.9 9.9 70 18-87 3-72 (371)
22 KOG0910|consensus 99.8 5.1E-19 1.1E-23 154.8 7.7 106 128-237 44-149 (150)
23 PRK14276 chaperone protein Dna 99.8 7.1E-19 1.5E-23 183.2 10.1 70 18-87 3-72 (380)
24 PRK14286 chaperone protein Dna 99.8 6.4E-19 1.4E-23 182.8 9.7 70 18-87 3-73 (372)
25 cd02996 PDI_a_ERp44 PDIa famil 99.8 7.3E-19 1.6E-23 150.8 7.4 100 128-232 2-108 (108)
26 PRK14301 chaperone protein Dna 99.8 1.5E-18 3.2E-23 180.1 9.6 70 18-87 3-73 (373)
27 cd02994 PDI_a_TMX PDIa family, 99.8 2.8E-18 6E-23 145.3 9.3 100 128-234 2-101 (101)
28 PTZ00037 DnaJ_C chaperone prot 99.8 1.6E-18 3.5E-23 181.3 9.0 68 17-87 26-93 (421)
29 PRK14282 chaperone protein Dna 99.8 2.7E-18 5.9E-23 178.3 10.6 70 18-87 3-74 (369)
30 PRK14291 chaperone protein Dna 99.8 1.7E-18 3.7E-23 180.4 9.1 70 18-87 2-71 (382)
31 PRK14278 chaperone protein Dna 99.7 2.4E-18 5.3E-23 178.9 9.8 68 19-86 3-70 (378)
32 COG3118 Thioredoxin domain-con 99.7 1.4E-18 3E-23 167.8 7.1 108 129-238 25-132 (304)
33 PRK14294 chaperone protein Dna 99.7 2.9E-18 6.2E-23 177.9 9.9 71 17-87 2-73 (366)
34 PRK14280 chaperone protein Dna 99.7 3.4E-18 7.4E-23 177.8 10.5 70 18-87 3-72 (376)
35 PRK14277 chaperone protein Dna 99.7 3.5E-18 7.7E-23 178.3 9.8 70 18-87 4-74 (386)
36 PRK14285 chaperone protein Dna 99.7 3.3E-18 7.2E-23 177.0 9.4 69 19-87 3-72 (365)
37 cd02993 PDI_a_APS_reductase PD 99.7 3.6E-18 7.9E-23 146.7 7.8 104 128-232 2-109 (109)
38 PTZ00443 Thioredoxin domain-co 99.7 5E-18 1.1E-22 162.8 9.2 108 127-236 30-139 (224)
39 TIGR02349 DnaJ_bact chaperone 99.7 6.7E-18 1.5E-22 174.9 9.9 68 20-87 1-68 (354)
40 PRK14297 chaperone protein Dna 99.7 6.5E-18 1.4E-22 176.1 9.6 70 18-87 3-73 (380)
41 PRK14299 chaperone protein Dna 99.7 4.1E-18 8.9E-23 171.2 7.8 70 18-87 3-72 (291)
42 PRK10767 chaperone protein Dna 99.7 1.6E-17 3.5E-22 172.9 10.7 70 18-87 3-73 (371)
43 cd03005 PDI_a_ERp46 PDIa famil 99.7 1.2E-17 2.7E-22 141.3 7.8 100 128-232 1-102 (102)
44 cd03002 PDI_a_MPD1_like PDI fa 99.7 1.8E-17 4E-22 142.1 7.9 99 129-232 2-108 (109)
45 PRK14279 chaperone protein Dna 99.7 8.9E-18 1.9E-22 175.3 6.9 69 18-86 8-77 (392)
46 PRK14283 chaperone protein Dna 99.7 1.4E-17 3.1E-22 173.4 7.6 70 18-87 4-73 (378)
47 PF00226 DnaJ: DnaJ domain; I 99.7 1.5E-17 3.4E-22 128.2 5.4 62 20-81 1-64 (64)
48 PRK09381 trxA thioredoxin; Pro 99.7 6.4E-17 1.4E-21 138.9 9.9 107 126-236 2-108 (109)
49 PRK14300 chaperone protein Dna 99.7 2.7E-17 5.9E-22 170.8 8.7 69 19-87 3-71 (372)
50 TIGR02187 GlrX_arch Glutaredox 99.7 8.2E-16 1.8E-20 148.5 17.4 196 134-346 10-214 (215)
51 cd02956 ybbN ybbN protein fami 99.7 8E-17 1.7E-21 134.9 9.1 94 136-232 2-95 (96)
52 cd03001 PDI_a_P5 PDIa family, 99.7 1E-16 2.2E-21 135.9 8.2 99 129-232 2-102 (103)
53 PHA02278 thioredoxin-like prot 99.7 1.1E-16 2.3E-21 135.3 8.0 94 133-231 3-100 (103)
54 KOG0624|consensus 99.7 1E-16 2.2E-21 156.1 8.3 68 15-82 390-461 (504)
55 KOG0716|consensus 99.7 4.8E-17 1E-21 154.1 5.7 70 18-87 30-100 (279)
56 cd02948 TRX_NDPK TRX domain, T 99.7 2.3E-16 5E-21 133.7 8.8 97 132-234 5-101 (102)
57 cd02999 PDI_a_ERp44_like PDIa 99.7 1.6E-16 3.6E-21 134.0 7.7 92 136-232 8-100 (100)
58 KOG0721|consensus 99.7 2.6E-16 5.6E-21 144.2 9.0 85 3-87 79-168 (230)
59 PRK14295 chaperone protein Dna 99.7 1.1E-16 2.4E-21 166.9 7.4 70 18-87 8-82 (389)
60 PRK14284 chaperone protein Dna 99.7 1.2E-16 2.6E-21 167.0 7.6 69 19-87 1-70 (391)
61 cd02995 PDI_a_PDI_a'_C PDIa fa 99.7 2.2E-16 4.7E-21 134.0 7.7 99 129-232 2-104 (104)
62 KOG0715|consensus 99.7 1.3E-16 2.8E-21 158.8 7.0 70 18-87 42-111 (288)
63 TIGR01126 pdi_dom protein disu 99.6 4.6E-16 9.9E-21 131.5 9.2 100 132-236 1-102 (102)
64 cd02997 PDI_a_PDIR PDIa family 99.6 3.2E-16 7E-21 133.0 8.2 100 129-232 2-104 (104)
65 cd02954 DIM1 Dim1 family; Dim1 99.6 2E-16 4.2E-21 134.8 6.3 87 135-224 3-89 (114)
66 PRK14281 chaperone protein Dna 99.6 1.7E-16 3.8E-21 166.1 7.3 69 19-87 3-72 (397)
67 PLN02309 5'-adenylylsulfate re 99.6 2.8E-16 6.1E-21 165.0 8.5 108 127-235 345-456 (457)
68 KOG0691|consensus 99.6 1.8E-16 4E-21 156.0 6.5 70 18-87 4-74 (296)
69 PRK10996 thioredoxin 2; Provis 99.6 6.9E-16 1.5E-20 138.3 9.6 104 128-236 36-139 (139)
70 TIGR00424 APS_reduc 5'-adenyly 99.6 2.9E-16 6.4E-21 164.9 8.1 107 127-234 351-461 (463)
71 PTZ00341 Ring-infected erythro 99.6 2.7E-16 5.9E-21 171.7 7.9 72 16-87 570-641 (1136)
72 KOG0717|consensus 99.6 1.6E-16 3.4E-21 160.0 4.8 73 14-86 3-77 (508)
73 PRK14292 chaperone protein Dna 99.6 3.4E-16 7.3E-21 163.0 7.3 69 19-87 2-70 (371)
74 cd03000 PDI_a_TMX3 PDIa family 99.6 1.2E-15 2.6E-20 129.8 9.0 95 135-235 7-103 (104)
75 PRK14293 chaperone protein Dna 99.6 4.5E-16 9.8E-21 162.0 7.4 69 19-87 3-71 (374)
76 PRK10266 curved DNA-binding pr 99.6 4.6E-16 9.9E-21 157.7 7.1 68 19-86 4-71 (306)
77 PRK14290 chaperone protein Dna 99.6 6E-16 1.3E-20 160.6 7.6 69 19-87 3-73 (365)
78 cd02985 TRX_CDSP32 TRX family, 99.6 1.5E-15 3.2E-20 129.0 8.1 96 133-233 2-100 (103)
79 KOG0718|consensus 99.6 5E-16 1.1E-20 156.4 6.0 71 17-87 7-81 (546)
80 cd02998 PDI_a_ERp38 PDIa famil 99.6 1.5E-15 3.2E-20 129.1 8.1 100 129-232 2-105 (105)
81 PRK14289 chaperone protein Dna 99.6 8.3E-16 1.8E-20 160.8 7.6 70 18-87 4-74 (386)
82 KOG0719|consensus 99.6 1E-15 2.2E-20 141.4 6.5 73 15-87 10-85 (264)
83 TIGR01068 thioredoxin thioredo 99.6 3.3E-15 7.2E-20 125.7 9.3 101 132-236 1-101 (101)
84 smart00271 DnaJ DnaJ molecular 99.6 1.6E-15 3.4E-20 115.4 5.9 57 19-75 1-59 (60)
85 cd02965 HyaE HyaE family; HyaE 99.6 4.6E-15 9.9E-20 125.5 9.3 96 129-229 12-109 (111)
86 KOG1731|consensus 99.6 2E-15 4.3E-20 156.6 7.9 222 127-356 39-284 (606)
87 cd02992 PDI_a_QSOX PDIa family 99.6 2.7E-15 5.8E-20 129.8 7.5 100 128-230 2-110 (114)
88 cd02962 TMX2 TMX2 family; comp 99.6 2.2E-15 4.8E-20 136.0 7.1 92 128-221 29-126 (152)
89 cd06257 DnaJ DnaJ domain or J- 99.6 3E-15 6.5E-20 111.7 6.4 54 20-73 1-55 (55)
90 cd02957 Phd_like Phosducin (Ph 99.6 2.6E-15 5.5E-20 129.8 6.4 90 128-221 5-94 (113)
91 cd02961 PDI_a_family Protein D 99.6 3.4E-15 7.4E-20 125.2 7.0 98 130-232 1-101 (101)
92 KOG0190|consensus 99.6 3E-15 6.5E-20 156.2 5.7 105 127-237 366-474 (493)
93 cd02984 TRX_PICOT TRX domain, 99.5 1.4E-14 2.9E-19 121.5 7.8 95 134-232 2-96 (97)
94 KOG0191|consensus 99.5 2.2E-14 4.9E-19 150.6 9.8 181 128-322 145-354 (383)
95 TIGR03835 termin_org_DnaJ term 99.5 1.3E-14 2.8E-19 155.4 7.8 69 19-87 2-70 (871)
96 PLN00410 U5 snRNP protein, DIM 99.5 3.2E-14 6.9E-19 125.9 8.7 100 133-235 10-119 (142)
97 KOG0907|consensus 99.5 4.8E-14 1E-18 119.2 9.2 85 146-234 20-104 (106)
98 PF13848 Thioredoxin_6: Thiore 99.5 4E-13 8.7E-18 126.2 16.5 180 267-473 1-184 (184)
99 cd02953 DsbDgamma DsbD gamma f 99.5 1.7E-14 3.6E-19 122.8 6.1 93 135-232 2-103 (104)
100 cd02989 Phd_like_TxnDC9 Phosdu 99.5 3.2E-14 7E-19 122.7 7.4 87 129-221 6-93 (113)
101 PHA03102 Small T antigen; Revi 99.5 2.5E-14 5.5E-19 127.5 6.2 66 19-87 5-72 (153)
102 PTZ00051 thioredoxin; Provisio 99.5 6.8E-14 1.5E-18 117.5 7.0 89 134-229 8-96 (98)
103 KOG0722|consensus 99.5 2.7E-14 5.8E-19 133.2 4.8 70 16-85 30-99 (329)
104 cd02950 TxlA TRX-like protein 99.5 1.5E-13 3.3E-18 123.5 9.3 98 134-236 10-110 (142)
105 cd02949 TRX_NTR TRX domain, no 99.5 1.8E-13 3.8E-18 114.9 9.1 87 145-233 11-97 (97)
106 cd02987 Phd_like_Phd Phosducin 99.4 2.1E-13 4.4E-18 126.8 8.7 89 129-221 64-153 (175)
107 cd02986 DLP Dim1 family, Dim1- 99.4 1.4E-13 3.1E-18 116.2 6.7 82 135-219 3-84 (114)
108 PTZ00102 disulphide isomerase; 99.4 2.9E-13 6.4E-18 146.7 9.0 109 127-239 357-468 (477)
109 cd02947 TRX_family TRX family; 99.4 8.3E-13 1.8E-17 108.4 9.1 91 136-232 2-92 (93)
110 cd02983 P5_C P5 family, C-term 99.4 1.3E-12 2.8E-17 115.3 10.3 123 350-490 2-129 (130)
111 COG2214 CbpA DnaJ-class molecu 99.4 5.3E-13 1.1E-17 129.5 6.8 68 17-84 4-73 (237)
112 KOG0908|consensus 99.4 9.2E-13 2E-17 123.4 7.1 102 133-239 8-109 (288)
113 PRK05014 hscB co-chaperone Hsc 99.4 1.1E-12 2.4E-17 120.8 7.1 66 19-84 1-74 (171)
114 PRK01356 hscB co-chaperone Hsc 99.3 1.4E-12 3.1E-17 119.3 7.2 66 19-84 2-73 (166)
115 cd02982 PDI_b'_family Protein 99.3 1.8E-12 4E-17 109.7 7.3 87 147-235 12-102 (103)
116 cd02988 Phd_like_VIAF Phosduci 99.3 1.5E-12 3.2E-17 122.6 7.3 87 129-221 84-170 (192)
117 cd02975 PfPDO_like_N Pyrococcu 99.3 2.3E-12 5E-17 111.2 7.8 93 137-236 15-110 (113)
118 KOG0720|consensus 99.3 9.6E-13 2.1E-17 133.1 5.6 69 18-86 234-302 (490)
119 PTZ00062 glutaredoxin; Provisi 99.3 2.1E-11 4.5E-16 115.2 13.5 162 133-318 5-174 (204)
120 TIGR01295 PedC_BrcD bacterioci 99.3 3.6E-12 7.9E-17 111.3 7.8 99 128-233 7-121 (122)
121 PRK00294 hscB co-chaperone Hsc 99.3 4E-12 8.7E-17 116.8 7.8 68 17-84 2-77 (173)
122 KOG0550|consensus 99.3 3.9E-12 8.4E-17 127.4 6.8 75 10-84 364-440 (486)
123 PRK03578 hscB co-chaperone Hsc 99.3 5.8E-12 1.2E-16 116.4 7.4 67 17-83 4-78 (176)
124 TIGR00411 redox_disulf_1 small 99.3 2.3E-11 5E-16 98.4 9.7 80 150-235 2-81 (82)
125 cd02951 SoxW SoxW family; SoxW 99.2 1.9E-11 4.2E-16 107.5 8.1 91 145-237 11-120 (125)
126 TIGR01130 ER_PDI_fam protein d 99.2 1.3E-11 2.8E-16 133.1 8.0 107 127-239 346-457 (462)
127 PTZ00100 DnaJ chaperone protei 99.2 7.8E-12 1.7E-16 105.6 4.6 53 17-72 63-115 (116)
128 cd02952 TRP14_like Human TRX-r 99.2 3.2E-11 6.9E-16 104.1 6.0 81 134-217 9-104 (119)
129 KOG0714|consensus 99.1 4.9E-11 1.1E-15 120.8 6.4 69 18-86 2-72 (306)
130 PRK09430 djlA Dna-J like membr 99.1 4.1E-11 8.8E-16 118.6 5.2 58 17-74 198-263 (267)
131 COG5407 SEC63 Preprotein trans 99.1 1.1E-10 2.4E-15 117.4 7.5 73 16-88 95-173 (610)
132 TIGR00412 redox_disulf_2 small 99.1 3.1E-10 6.7E-15 90.5 8.0 74 151-232 2-75 (76)
133 PHA02125 thioredoxin-like prot 99.1 5.4E-10 1.2E-14 88.9 7.9 69 151-230 2-71 (75)
134 PHA02624 large T antigen; Prov 99.1 1.4E-10 3.1E-15 123.7 5.5 62 17-81 9-72 (647)
135 PF13848 Thioredoxin_6: Thiore 99.0 2.2E-08 4.9E-13 93.8 18.6 167 165-345 8-183 (184)
136 KOG1150|consensus 99.0 3.7E-10 8E-15 102.0 5.6 65 16-80 50-116 (250)
137 PF13098 Thioredoxin_2: Thiore 99.0 7.4E-10 1.6E-14 95.3 5.7 86 145-232 3-112 (112)
138 TIGR02187 GlrX_arch Glutaredox 99.0 2.6E-09 5.7E-14 103.1 10.0 82 147-234 133-214 (215)
139 PRK00293 dipZ thiol:disulfide 99.0 8E-10 1.7E-14 121.3 7.0 101 133-236 459-570 (571)
140 PRK01773 hscB co-chaperone Hsc 98.9 1.5E-09 3.3E-14 99.8 7.2 66 19-84 2-75 (173)
141 PRK14018 trifunctional thiored 98.9 5.7E-09 1.2E-13 111.6 10.6 89 146-235 55-172 (521)
142 cd02955 SSP411 TRX domain, SSP 98.9 3.4E-09 7.3E-14 92.5 7.3 73 145-219 13-97 (124)
143 PRK03147 thiol-disulfide oxido 98.9 1.1E-08 2.3E-13 95.2 10.2 88 147-235 61-171 (173)
144 cd02959 ERp19 Endoplasmic reti 98.9 1.1E-09 2.5E-14 94.9 3.2 72 145-217 17-91 (117)
145 TIGR02740 TraF-like TraF-like 98.8 1.1E-08 2.3E-13 101.9 9.8 88 146-237 165-265 (271)
146 cd02973 TRX_GRX_like Thioredox 98.8 7.5E-09 1.6E-13 80.2 6.2 59 151-214 3-61 (67)
147 TIGR00714 hscB Fe-S protein as 98.8 7.1E-09 1.5E-13 94.3 6.6 55 31-85 3-63 (157)
148 cd03009 TryX_like_TryX_NRX Try 98.8 1E-08 2.2E-13 90.9 7.3 72 147-219 18-116 (131)
149 PRK11509 hydrogenase-1 operon 98.8 3.4E-08 7.3E-13 86.3 10.3 104 132-239 22-127 (132)
150 TIGR02738 TrbB type-F conjugat 98.8 2.6E-08 5.5E-13 90.4 9.6 85 147-235 50-152 (153)
151 KOG0914|consensus 98.8 1.8E-09 3.9E-14 99.3 2.0 79 143-221 140-223 (265)
152 cd02964 TryX_like_family Trypa 98.8 1.4E-08 3E-13 90.2 7.2 73 146-219 16-116 (132)
153 KOG0913|consensus 98.8 1.2E-09 2.7E-14 102.0 0.0 101 128-235 25-125 (248)
154 cd02966 TlpA_like_family TlpA- 98.8 3E-08 6.6E-13 84.5 8.3 72 147-219 19-114 (116)
155 cd03010 TlpA_like_DsbE TlpA-li 98.7 2.7E-08 5.8E-13 87.6 7.9 78 147-228 25-126 (127)
156 TIGR00385 dsbE periplasmic pro 98.7 3.4E-08 7.5E-13 92.0 8.4 86 146-236 62-171 (173)
157 cd03008 TryX_like_RdCVF Trypar 98.7 3.3E-08 7.1E-13 88.7 7.7 73 146-219 24-129 (146)
158 PRK15412 thiol:disulfide inter 98.7 5.4E-08 1.2E-12 91.7 8.9 87 146-237 67-177 (185)
159 PF13905 Thioredoxin_8: Thiore 98.7 4.5E-08 9.8E-13 81.4 7.4 67 147-214 1-94 (95)
160 cd03026 AhpF_NTD_C TRX-GRX-lik 98.7 7.2E-08 1.6E-12 79.2 8.4 76 147-229 12-87 (89)
161 cd03011 TlpA_like_ScsD_MtbDsbE 98.6 1.5E-07 3.3E-12 82.1 8.5 81 146-230 19-120 (123)
162 PLN02919 haloacid dehalogenase 98.6 1.6E-07 3.4E-12 110.2 10.2 90 146-236 419-536 (1057)
163 COG5269 ZUO1 Ribosome-associat 98.5 8.2E-08 1.8E-12 90.9 5.3 71 15-85 39-115 (379)
164 cd02967 mauD Methylamine utili 98.5 3.7E-07 8E-12 78.5 8.2 59 147-207 21-82 (114)
165 cd03012 TlpA_like_DipZ_like Tl 98.5 4.4E-07 9.4E-12 79.8 8.5 74 147-221 23-124 (126)
166 PRK13728 conjugal transfer pro 98.5 6.4E-07 1.4E-11 82.8 9.1 83 151-238 73-173 (181)
167 cd02958 UAS UAS family; UAS is 98.4 8.9E-07 1.9E-11 76.4 8.8 89 145-235 15-110 (114)
168 PTZ00056 glutathione peroxidas 98.4 6.5E-07 1.4E-11 85.2 8.1 91 147-239 39-181 (199)
169 PF08534 Redoxin: Redoxin; In 98.4 1.3E-06 2.8E-11 78.8 8.1 78 146-224 27-136 (146)
170 PLN02399 phospholipid hydroper 98.3 3.3E-06 7.1E-11 82.0 9.7 90 146-236 98-234 (236)
171 COG4232 Thiol:disulfide interc 98.3 9.6E-07 2.1E-11 93.9 6.4 98 136-235 464-567 (569)
172 COG0526 TrxA Thiol-disulfide i 98.2 3.2E-06 6.9E-11 71.7 7.2 70 147-218 32-104 (127)
173 TIGR02196 GlrX_YruB Glutaredox 98.2 3.7E-06 8E-11 65.8 7.0 68 151-232 2-73 (74)
174 TIGR02540 gpx7 putative glutat 98.2 7.2E-06 1.6E-10 74.7 9.9 42 147-188 22-63 (153)
175 KOG0568|consensus 98.2 7.9E-07 1.7E-11 82.4 3.4 57 18-74 46-103 (342)
176 PF13899 Thioredoxin_7: Thiore 98.2 6.3E-07 1.4E-11 72.5 2.1 64 145-211 15-81 (82)
177 PLN02412 probable glutathione 98.2 9.6E-06 2.1E-10 75.0 9.7 43 147-189 29-71 (167)
178 cd03007 PDI_a_ERp29_N PDIa fam 98.1 2.2E-05 4.7E-10 67.4 10.3 100 241-347 3-115 (116)
179 smart00594 UAS UAS domain. 98.1 8.8E-06 1.9E-10 71.1 8.0 86 145-232 25-121 (122)
180 cd00340 GSH_Peroxidase Glutath 98.1 7.8E-06 1.7E-10 74.4 7.8 42 147-189 22-63 (152)
181 cd02960 AGR Anterior Gradient 98.1 2.4E-06 5.2E-11 74.7 4.0 69 144-216 20-93 (130)
182 TIGR02661 MauD methylamine deh 98.1 1.6E-05 3.4E-10 75.2 9.6 84 146-234 73-177 (189)
183 cd02969 PRX_like1 Peroxiredoxi 98.1 2.2E-05 4.8E-10 72.9 10.2 93 146-239 24-155 (171)
184 cd03073 PDI_b'_ERp72_ERp57 PDI 98.1 1.9E-05 4.1E-10 67.7 8.6 103 353-475 2-111 (111)
185 cd03065 PDI_b_Calsequestrin_N 98.1 2.3E-05 5E-10 68.0 9.2 96 241-346 11-117 (120)
186 PF00085 Thioredoxin: Thioredo 98.1 2.6E-05 5.5E-10 65.3 9.1 97 242-347 2-103 (103)
187 TIGR01626 ytfJ_HI0045 conserve 98.0 1.9E-05 4.1E-10 73.6 8.3 80 146-230 58-174 (184)
188 cd01659 TRX_superfamily Thiore 98.0 1.1E-05 2.4E-10 60.2 5.4 60 151-213 1-63 (69)
189 TIGR02200 GlrX_actino Glutared 98.0 1.5E-05 3.3E-10 63.1 5.9 70 151-233 2-76 (77)
190 cd03066 PDI_b_Calsequestrin_mi 98.0 5.7E-05 1.2E-09 63.7 9.5 93 244-348 6-101 (102)
191 KOG0911|consensus 97.9 1.7E-05 3.7E-10 74.4 6.4 164 146-316 16-195 (227)
192 PF13192 Thioredoxin_3: Thiore 97.9 6.5E-05 1.4E-09 59.7 8.7 74 152-233 3-76 (76)
193 KOG1789|consensus 97.9 1E-05 2.2E-10 89.4 5.0 56 16-73 1278-1337(2235)
194 cd02981 PDI_b_family Protein D 97.9 8.8E-05 1.9E-09 61.7 9.5 91 245-347 6-97 (97)
195 cd03072 PDI_b'_ERp44 PDIb' fam 97.9 4.5E-05 9.7E-10 65.4 7.7 92 369-478 18-111 (111)
196 KOG1672|consensus 97.9 1.1E-05 2.3E-10 73.7 3.8 84 133-222 73-156 (211)
197 PTZ00256 glutathione peroxidas 97.9 9.5E-05 2.1E-09 69.5 9.9 41 149-189 43-83 (183)
198 PF02114 Phosducin: Phosducin; 97.8 1.4E-05 3.1E-10 79.0 4.4 104 128-235 126-237 (265)
199 PF13728 TraF: F plasmid trans 97.8 6.4E-05 1.4E-09 72.3 8.6 81 146-230 119-212 (215)
200 cd03004 PDI_a_ERdj5_C PDIa fam 97.8 0.00017 3.6E-09 60.8 10.3 96 241-344 3-104 (104)
201 cd03069 PDI_b_ERp57 PDIb famil 97.8 0.00012 2.6E-09 62.1 9.2 92 245-347 7-103 (104)
202 PF00578 AhpC-TSA: AhpC/TSA fa 97.8 3.9E-05 8.5E-10 66.8 6.3 68 146-214 24-120 (124)
203 cd03017 PRX_BCP Peroxiredoxin 97.8 7.1E-05 1.5E-09 66.7 7.6 81 147-228 23-135 (140)
204 KOG2501|consensus 97.8 5E-05 1.1E-09 67.8 6.1 73 146-219 32-132 (157)
205 cd02996 PDI_a_ERp44 PDIa famil 97.7 0.00021 4.4E-09 60.9 9.4 95 241-344 3-108 (108)
206 KOG0723|consensus 97.7 4.7E-05 1E-09 62.4 5.0 53 19-74 56-108 (112)
207 TIGR03137 AhpC peroxiredoxin. 97.7 0.00015 3.3E-09 68.3 9.2 87 147-233 31-153 (187)
208 cd03074 PDI_b'_Calsequestrin_C 97.7 0.00039 8.5E-09 57.3 9.8 116 350-475 1-120 (120)
209 cd03015 PRX_Typ2cys Peroxiredo 97.7 0.00019 4.1E-09 66.7 9.3 88 147-235 29-156 (173)
210 cd03002 PDI_a_MPD1_like PDI fa 97.7 0.00038 8.2E-09 59.1 10.0 101 241-345 2-109 (109)
211 cd03003 PDI_a_ERdj5_N PDIa fam 97.7 0.00047 1E-08 57.8 10.4 93 241-343 3-100 (101)
212 PRK10606 btuE putative glutath 97.6 0.00018 3.9E-09 67.3 8.0 42 147-189 25-66 (183)
213 cd02982 PDI_b'_family Protein 97.6 0.00024 5.1E-09 59.7 7.6 89 369-475 13-103 (103)
214 cd03068 PDI_b_ERp72 PDIb famil 97.6 0.00048 1E-08 58.6 9.4 95 243-347 5-107 (107)
215 cd03001 PDI_a_P5 PDIa family, 97.6 0.00062 1.3E-08 57.0 10.1 96 241-344 2-102 (103)
216 PRK00522 tpx lipid hydroperoxi 97.6 0.00039 8.4E-09 64.3 9.4 42 147-190 44-86 (167)
217 cd03006 PDI_a_EFP1_N PDIa fami 97.6 0.00071 1.5E-08 58.1 10.1 97 241-344 11-113 (113)
218 PF07912 ERp29_N: ERp29, N-ter 97.5 0.00067 1.5E-08 57.8 9.4 104 128-237 5-120 (126)
219 cd02970 PRX_like2 Peroxiredoxi 97.5 0.00031 6.6E-09 63.2 8.1 47 148-194 24-71 (149)
220 TIGR02180 GRX_euk Glutaredoxin 97.5 0.00013 2.8E-09 58.8 4.6 71 151-233 1-76 (84)
221 TIGR01126 pdi_dom protein disu 97.5 0.00094 2E-08 55.6 10.0 93 245-347 2-101 (102)
222 TIGR03143 AhpF_homolog putativ 97.5 0.0039 8.5E-08 69.0 17.5 180 146-344 365-554 (555)
223 PRK09437 bcp thioredoxin-depen 97.5 0.00045 9.8E-09 62.8 8.4 75 147-222 30-139 (154)
224 PRK10382 alkyl hydroperoxide r 97.5 0.0008 1.7E-08 63.3 10.0 88 147-235 31-155 (187)
225 COG2143 Thioredoxin-related pr 97.5 0.00071 1.5E-08 59.8 8.7 84 145-230 40-143 (182)
226 PRK11200 grxA glutaredoxin 1; 97.4 0.00048 1E-08 55.9 7.2 77 150-237 2-84 (85)
227 TIGR02739 TraF type-F conjugat 97.4 0.00055 1.2E-08 67.1 8.8 86 146-235 149-247 (256)
228 cd02998 PDI_a_ERp38 PDIa famil 97.4 0.0013 2.9E-08 55.0 9.4 95 242-344 3-105 (105)
229 cd03018 PRX_AhpE_like Peroxire 97.3 0.00071 1.5E-08 61.0 7.5 43 148-190 29-72 (149)
230 PRK13190 putative peroxiredoxi 97.3 0.0011 2.3E-08 63.4 8.6 86 149-235 30-153 (202)
231 cd02968 SCO SCO (an acronym fo 97.3 0.00075 1.6E-08 60.2 7.2 44 147-190 22-69 (142)
232 cd02976 NrdH NrdH-redoxin (Nrd 97.2 0.00087 1.9E-08 51.9 6.3 67 151-231 2-72 (73)
233 cd02965 HyaE HyaE family; HyaE 97.2 0.0032 6.9E-08 53.6 9.7 85 228-322 2-93 (111)
234 PRK13703 conjugal pilus assemb 97.2 0.0017 3.6E-08 63.4 8.8 88 146-235 142-240 (248)
235 PF06110 DUF953: Eukaryotic pr 97.2 0.00054 1.2E-08 59.0 4.7 77 135-213 6-99 (119)
236 PRK11509 hydrogenase-1 operon 97.2 0.0035 7.5E-08 55.0 9.8 114 226-353 8-129 (132)
237 cd03005 PDI_a_ERp46 PDIa famil 97.2 0.003 6.5E-08 52.7 9.2 92 242-344 3-102 (102)
238 PRK15000 peroxidase; Provision 97.1 0.0021 4.5E-08 61.3 8.9 87 147-234 34-160 (200)
239 cd02995 PDI_a_PDI_a'_C PDIa fa 97.1 0.0029 6.3E-08 52.9 8.8 96 241-344 2-104 (104)
240 cd02961 PDI_a_family Protein D 97.1 0.0041 8.9E-08 51.2 9.6 92 244-344 3-101 (101)
241 cd02997 PDI_a_PDIR PDIa family 97.1 0.0033 7.1E-08 52.6 9.0 96 241-344 2-104 (104)
242 cd02993 PDI_a_APS_reductase PD 97.1 0.0034 7.3E-08 53.5 9.2 97 241-344 3-109 (109)
243 TIGR01068 thioredoxin thioredo 97.1 0.0045 9.8E-08 51.2 9.8 94 245-347 2-100 (101)
244 cd03067 PDI_b_PDIR_N PDIb fami 97.1 0.0015 3.2E-08 53.4 6.2 95 134-234 9-110 (112)
245 PF14595 Thioredoxin_9: Thiore 97.1 0.00076 1.7E-08 59.4 5.1 82 147-233 41-126 (129)
246 PRK10877 protein disulfide iso 97.1 0.001 2.2E-08 64.8 6.5 84 143-235 103-230 (232)
247 KOG4277|consensus 97.1 0.016 3.4E-07 56.7 14.0 137 250-410 48-186 (468)
248 KOG2603|consensus 97.1 0.0021 4.6E-08 63.3 8.2 109 127-237 40-167 (331)
249 TIGR02183 GRXA Glutaredoxin, G 97.0 0.0016 3.6E-08 52.9 6.2 75 151-236 2-82 (86)
250 cd02971 PRX_family Peroxiredox 97.0 0.0026 5.6E-08 56.5 7.8 45 146-190 21-66 (140)
251 cd02956 ybbN ybbN protein fami 97.0 0.008 1.7E-07 49.6 10.3 90 248-345 2-96 (96)
252 PRK10996 thioredoxin 2; Provis 97.0 0.0058 1.3E-07 54.6 10.0 95 243-347 39-138 (139)
253 cd02994 PDI_a_TMX PDIa family, 97.0 0.0058 1.3E-07 51.0 9.3 90 241-345 3-100 (101)
254 KOG0912|consensus 97.0 0.0057 1.2E-07 60.0 10.1 112 285-407 48-160 (375)
255 PF01216 Calsequestrin: Calseq 97.0 0.012 2.5E-07 59.1 12.4 159 241-420 36-209 (383)
256 PF00462 Glutaredoxin: Glutare 97.0 0.0018 3.9E-08 48.6 5.5 55 151-215 1-59 (60)
257 cd02991 UAS_ETEA UAS family, E 96.9 0.0032 6.9E-08 54.4 7.2 88 144-236 14-113 (116)
258 PTZ00137 2-Cys peroxiredoxin; 96.9 0.0056 1.2E-07 60.5 9.8 88 147-235 98-224 (261)
259 TIGR03143 AhpF_homolog putativ 96.9 0.003 6.5E-08 69.9 8.9 79 147-232 475-554 (555)
260 PRK09381 trxA thioredoxin; Pro 96.9 0.0082 1.8E-07 50.9 9.8 98 241-347 5-107 (109)
261 PF03190 Thioredox_DsbH: Prote 96.9 0.0008 1.7E-08 61.1 3.6 71 145-217 35-117 (163)
262 cd02981 PDI_b_family Protein D 96.9 0.0032 7E-08 52.2 7.0 80 145-234 15-96 (97)
263 KOG3425|consensus 96.9 0.00089 1.9E-08 56.5 3.3 76 135-212 13-104 (128)
264 cd03020 DsbA_DsbC_DsbG DsbA fa 96.9 0.0023 4.9E-08 60.8 6.4 84 144-232 74-197 (197)
265 KOG0910|consensus 96.8 0.005 1.1E-07 54.7 7.8 97 241-346 45-146 (150)
266 TIGR02190 GlrX-dom Glutaredoxi 96.8 0.0048 1E-07 49.3 7.1 70 147-232 6-78 (79)
267 cd03072 PDI_b'_ERp44 PDIb' fam 96.8 0.0041 9E-08 53.2 7.1 101 131-237 3-109 (111)
268 COG3118 Thioredoxin domain-con 96.8 0.0089 1.9E-07 59.0 9.7 100 241-347 25-129 (304)
269 PRK13599 putative peroxiredoxi 96.8 0.0062 1.3E-07 58.6 8.6 86 149-235 31-155 (215)
270 cd03016 PRX_1cys Peroxiredoxin 96.8 0.0072 1.6E-07 57.7 9.0 86 149-235 28-153 (203)
271 cd03419 GRX_GRXh_1_2_like Glut 96.6 0.0049 1.1E-07 49.3 5.8 69 151-233 2-75 (82)
272 PRK15317 alkyl hydroperoxide r 96.6 0.0069 1.5E-07 66.5 9.0 85 147-238 116-200 (517)
273 PRK13189 peroxiredoxin; Provis 96.6 0.0098 2.1E-07 57.6 8.7 86 149-235 38-162 (222)
274 cd02953 DsbDgamma DsbD gamma f 96.5 0.019 4.1E-07 48.2 9.2 84 258-344 9-103 (104)
275 cd03014 PRX_Atyp2cys Peroxired 96.5 0.0046 1E-07 55.3 5.7 43 147-191 26-69 (143)
276 KOG3192|consensus 96.5 0.0027 5.8E-08 56.0 3.9 67 17-83 6-80 (168)
277 cd02983 P5_C P5 family, C-term 96.5 0.018 3.9E-07 50.8 9.1 110 128-239 3-118 (130)
278 PTZ00253 tryparedoxin peroxida 96.5 0.015 3.3E-07 55.3 9.2 89 147-235 36-163 (199)
279 PRK13191 putative peroxiredoxi 96.4 0.015 3.3E-07 56.0 8.7 87 149-235 36-160 (215)
280 cd02954 DIM1 Dim1 family; Dim1 96.4 0.026 5.7E-07 48.3 9.1 71 247-322 3-78 (114)
281 TIGR00424 APS_reduc 5'-adenyly 96.4 0.031 6.7E-07 59.7 11.7 105 238-346 350-461 (463)
282 COG1076 DjlA DnaJ-domain-conta 96.4 0.0019 4E-08 60.1 2.2 53 19-71 113-173 (174)
283 cd02989 Phd_like_TxnDC9 Phosdu 96.4 0.03 6.4E-07 48.1 9.5 92 245-344 11-112 (113)
284 cd02992 PDI_a_QSOX PDIa family 96.4 0.015 3.3E-07 49.9 7.6 79 241-323 3-89 (114)
285 PF07449 HyaE: Hydrogenase-1 e 96.3 0.01 2.2E-07 50.1 6.1 88 131-224 13-103 (107)
286 cd02963 TRX_DnaJ TRX domain, D 96.3 0.019 4.2E-07 49.0 8.1 82 259-346 23-110 (111)
287 cd03073 PDI_b'_ERp72_ERp57 PDI 96.2 0.015 3.3E-07 49.7 6.9 97 132-235 4-110 (111)
288 PF07912 ERp29_N: ERp29, N-ter 96.1 0.056 1.2E-06 46.3 9.6 102 243-348 8-119 (126)
289 cd03029 GRX_hybridPRX5 Glutare 96.1 0.015 3.3E-07 45.3 5.8 66 151-232 3-71 (72)
290 cd02984 TRX_PICOT TRX domain, 96.1 0.057 1.2E-06 44.4 9.5 72 246-322 2-78 (97)
291 cd02948 TRX_NDPK TRX domain, T 96.0 0.066 1.4E-06 44.9 9.9 91 243-345 4-100 (102)
292 KOG3414|consensus 96.0 0.023 5E-07 48.4 6.8 76 138-216 15-90 (142)
293 cd03000 PDI_a_TMX3 PDIa family 96.0 0.052 1.1E-06 45.6 9.2 54 286-346 49-102 (104)
294 PLN02309 5'-adenylylsulfate re 96.0 0.031 6.7E-07 59.7 9.2 101 239-346 345-455 (457)
295 cd02066 GRX_family Glutaredoxi 95.9 0.014 3E-07 44.8 4.9 55 151-215 2-60 (72)
296 PTZ00443 Thioredoxin domain-co 95.9 0.54 1.2E-05 45.5 16.6 90 369-479 53-143 (224)
297 cd02957 Phd_like Phosducin (Ph 95.8 0.044 9.6E-07 46.9 7.8 77 241-323 6-87 (113)
298 TIGR02194 GlrX_NrdH Glutaredox 95.8 0.014 3E-07 45.6 4.2 66 152-230 2-70 (72)
299 cd02947 TRX_family TRX family; 95.8 0.092 2E-06 41.9 9.3 79 260-344 10-92 (93)
300 cd02949 TRX_NTR TRX domain, no 95.8 0.098 2.1E-06 43.3 9.6 81 259-345 12-97 (97)
301 cd02962 TMX2 TMX2 family; comp 95.7 0.063 1.4E-06 48.7 8.9 78 241-322 30-118 (152)
302 TIGR03140 AhpF alkyl hydropero 95.6 0.043 9.3E-07 60.2 9.1 84 147-237 117-200 (515)
303 PF13462 Thioredoxin_4: Thiore 95.6 0.094 2E-06 47.6 9.6 44 144-188 9-54 (162)
304 cd03071 PDI_b'_NRX PDIb' famil 95.6 0.11 2.5E-06 43.0 8.7 93 369-475 15-115 (116)
305 PHA02278 thioredoxin-like prot 95.5 0.1 2.2E-06 43.9 9.0 89 247-343 5-100 (103)
306 cd02985 TRX_CDSP32 TRX family, 95.5 0.17 3.6E-06 42.5 10.3 74 245-322 2-81 (103)
307 TIGR02181 GRX_bact Glutaredoxi 95.5 0.016 3.4E-07 46.1 3.8 58 152-222 2-63 (79)
308 PRK10329 glutaredoxin-like pro 95.4 0.02 4.3E-07 46.0 4.1 71 151-235 3-76 (81)
309 cd02999 PDI_a_ERp44_like PDIa 95.4 0.13 2.7E-06 43.1 9.2 77 259-344 17-100 (100)
310 PTZ00051 thioredoxin; Provisio 95.4 0.078 1.7E-06 43.7 7.9 73 243-322 5-81 (98)
311 cd02950 TxlA TRX-like protein 95.4 0.16 3.4E-06 45.5 10.3 93 247-346 11-108 (142)
312 cd03418 GRX_GRXb_1_3_like Glut 95.4 0.03 6.4E-07 43.8 4.9 59 151-222 2-65 (75)
313 PF11009 DUF2847: Protein of u 95.3 0.022 4.8E-07 47.8 4.2 93 134-228 7-104 (105)
314 cd03027 GRX_DEP Glutaredoxin ( 95.3 0.031 6.8E-07 43.7 4.9 59 151-222 3-65 (73)
315 cd02972 DsbA_family DsbA famil 95.3 0.032 7E-07 45.4 5.2 59 151-211 1-91 (98)
316 KOG0431|consensus 95.2 0.034 7.4E-07 59.4 6.0 49 22-70 391-447 (453)
317 PF05768 DUF836: Glutaredoxin- 95.2 0.036 7.7E-07 44.5 4.7 78 151-233 2-81 (81)
318 TIGR02189 GlrX-like_plant Glut 94.9 0.046 9.9E-07 45.7 4.9 59 151-222 10-75 (99)
319 PHA03050 glutaredoxin; Provisi 94.8 0.039 8.5E-07 46.9 4.3 62 151-222 15-83 (108)
320 cd02987 Phd_like_Phd Phosducin 94.8 0.27 5.8E-06 45.7 10.2 100 241-347 64-174 (175)
321 PRK11657 dsbG disulfide isomer 94.7 0.17 3.6E-06 50.0 9.2 84 145-233 115-249 (251)
322 cd03067 PDI_b_PDIR_N PDIb fami 94.7 0.17 3.6E-06 41.7 7.4 98 243-346 5-110 (112)
323 KOG0907|consensus 94.7 0.23 5E-06 42.0 8.6 62 259-324 20-86 (106)
324 PLN00410 U5 snRNP protein, DIM 94.6 0.38 8.3E-06 42.9 10.3 75 245-323 10-89 (142)
325 cd02986 DLP Dim1 family, Dim1- 94.6 0.24 5.1E-06 42.3 8.5 73 247-324 3-80 (114)
326 cd02975 PfPDO_like_N Pyrococcu 94.4 0.44 9.6E-06 40.7 10.0 56 286-345 52-107 (113)
327 COG1076 DjlA DnaJ-domain-conta 94.4 0.029 6.3E-07 52.1 2.7 66 20-85 2-75 (174)
328 cd03028 GRX_PICOT_like Glutare 94.1 0.11 2.4E-06 42.5 5.3 62 148-222 8-77 (90)
329 COG0695 GrxC Glutaredoxin and 93.8 0.095 2.1E-06 41.9 4.2 65 151-228 3-73 (80)
330 PTZ00062 glutaredoxin; Provisi 93.7 1.8 3.9E-05 41.2 13.5 164 245-438 5-174 (204)
331 cd03023 DsbA_Com1_like DsbA fa 93.5 0.091 2E-06 47.0 4.3 41 146-188 4-44 (154)
332 PRK15317 alkyl hydroperoxide r 93.5 1 2.3E-05 49.4 13.2 169 148-346 19-196 (517)
333 PF03656 Pam16: Pam16; InterP 93.3 0.14 3E-06 44.7 4.8 56 20-78 59-114 (127)
334 PF02966 DIM1: Mitosis protein 93.2 0.35 7.5E-06 42.0 6.9 75 138-216 12-87 (133)
335 PRK10638 glutaredoxin 3; Provi 93.1 0.18 3.9E-06 40.5 4.8 65 151-231 4-72 (83)
336 PRK10824 glutaredoxin-4; Provi 92.7 0.21 4.6E-06 42.9 5.0 55 157-222 28-84 (115)
337 cd02951 SoxW SoxW family; SoxW 92.7 1.1 2.3E-05 38.9 9.6 85 258-345 11-116 (125)
338 KOG1731|consensus 92.6 0.088 1.9E-06 56.3 3.1 67 247-322 59-126 (606)
339 KOG3170|consensus 91.9 0.17 3.8E-06 46.8 3.7 81 129-215 93-173 (240)
340 KOG2640|consensus 91.7 0.087 1.9E-06 52.3 1.6 92 145-239 74-165 (319)
341 TIGR00365 monothiol glutaredox 91.6 0.34 7.3E-06 40.3 4.8 53 157-222 25-81 (97)
342 TIGR03140 AhpF alkyl hydropero 91.2 4.5 9.8E-05 44.4 14.6 167 149-344 20-195 (515)
343 TIGR01295 PedC_BrcD bacterioci 91.1 1.1 2.4E-05 38.9 7.8 97 243-345 10-121 (122)
344 cd03019 DsbA_DsbA DsbA family, 90.3 0.37 8.1E-06 44.4 4.5 42 146-188 14-55 (178)
345 PRK00293 dipZ thiol:disulfide 89.9 1.9 4.1E-05 48.0 10.1 101 245-346 459-568 (571)
346 cd02988 Phd_like_VIAF Phosduci 89.6 2.9 6.3E-05 39.5 9.9 110 346-473 78-190 (192)
347 cd03066 PDI_b_Calsequestrin_mi 88.9 2 4.4E-05 35.8 7.4 90 133-234 7-99 (102)
348 KOG3171|consensus 88.5 0.48 1E-05 44.4 3.5 84 129-216 140-224 (273)
349 PF07449 HyaE: Hydrogenase-1 e 88.1 2.2 4.9E-05 36.0 7.1 74 242-322 12-92 (107)
350 cd02952 TRP14_like Human TRX-r 87.8 3.1 6.6E-05 36.0 7.9 75 245-322 8-100 (119)
351 PRK10954 periplasmic protein d 87.6 0.58 1.2E-05 44.7 3.8 42 147-189 37-81 (207)
352 PRK12759 bifunctional gluaredo 87.0 0.78 1.7E-05 48.7 4.6 59 151-222 4-74 (410)
353 KOG1752|consensus 86.2 2.6 5.6E-05 35.5 6.4 63 148-222 14-81 (104)
354 cd03069 PDI_b_ERp57 PDIb famil 86.0 3.5 7.5E-05 34.6 7.2 88 134-235 8-103 (104)
355 cd03013 PRX5_like Peroxiredoxi 85.7 1.3 2.9E-05 40.1 4.9 53 148-200 31-88 (155)
356 COG3019 Predicted metal-bindin 85.4 4.1 8.9E-05 35.8 7.3 77 149-235 26-103 (149)
357 TIGR00411 redox_disulf_1 small 85.1 8.3 0.00018 30.1 8.8 77 373-474 5-81 (82)
358 PF13417 GST_N_3: Glutathione 84.8 3.2 6.8E-05 32.3 6.1 72 154-239 2-74 (75)
359 cd02958 UAS UAS family; UAS is 83.9 10 0.00022 32.1 9.4 93 249-344 6-107 (114)
360 KOG2603|consensus 82.9 9.9 0.00022 38.1 9.7 106 238-347 39-165 (331)
361 PF11833 DUF3353: Protein of u 82.6 2.1 4.5E-05 40.4 4.8 40 28-74 1-40 (194)
362 COG1225 Bcp Peroxiredoxin [Pos 80.6 3.3 7.3E-05 37.5 5.2 44 147-190 30-74 (157)
363 PF11009 DUF2847: Protein of u 80.2 2.7 5.8E-05 35.4 4.1 76 244-322 5-88 (105)
364 KOG0914|consensus 78.2 5.1 0.00011 38.0 5.7 43 280-324 169-217 (265)
365 smart00594 UAS UAS domain. 78.1 20 0.00044 30.8 9.3 95 248-343 15-120 (122)
366 PF13098 Thioredoxin_2: Thiore 77.5 6.2 0.00013 33.0 5.8 84 258-344 3-112 (112)
367 PF13446 RPT: A repeated domai 75.8 3.8 8.2E-05 30.8 3.5 27 19-45 5-31 (62)
368 cd02978 KaiB_like KaiB-like fa 75.5 8.4 0.00018 30.0 5.4 58 151-209 4-61 (72)
369 cd02973 TRX_GRX_like Thioredox 75.4 11 0.00025 28.2 6.2 31 285-318 28-58 (67)
370 cd03060 GST_N_Omega_like GST_N 74.3 8 0.00017 29.5 5.2 57 152-215 2-59 (71)
371 PF02114 Phosducin: Phosducin; 73.6 10 0.00023 37.6 7.0 63 284-350 174-240 (265)
372 COG0278 Glutaredoxin-related p 73.3 5.4 0.00012 33.0 4.0 57 156-222 27-85 (105)
373 cd03040 GST_N_mPGES2 GST_N fam 69.4 27 0.00058 26.9 7.3 72 151-237 2-77 (77)
374 COG3531 Predicted protein-disu 68.9 7.5 0.00016 36.4 4.3 44 192-236 164-209 (212)
375 PF06363 Picorna_P3A: Picornav 68.1 42 0.00091 27.1 7.8 75 461-536 11-87 (100)
376 KOG0724|consensus 67.8 4.9 0.00011 41.4 3.4 55 30-84 3-62 (335)
377 cd02955 SSP411 TRX domain, SSP 67.8 43 0.00094 29.0 8.8 64 258-324 13-92 (124)
378 cd03041 GST_N_2GST_N GST_N fam 65.9 34 0.00073 26.6 7.2 70 152-235 3-76 (77)
379 KOG2507|consensus 65.6 18 0.0004 37.7 6.7 96 141-237 12-112 (506)
380 cd02974 AhpF_NTD_N Alkyl hydro 65.0 75 0.0016 26.1 9.2 81 360-474 13-93 (94)
381 cd03068 PDI_b_ERp72 PDIb famil 64.3 29 0.00062 29.2 6.9 90 134-234 8-106 (107)
382 cd02959 ERp19 Endoplasmic reti 64.2 37 0.0008 29.0 7.6 75 249-324 8-88 (117)
383 cd03070 PDI_b_ERp44 PDIb famil 64.1 27 0.00058 28.6 6.3 70 259-337 16-86 (91)
384 TIGR02740 TraF-like TraF-like 61.9 27 0.00059 34.8 7.3 44 300-345 218-261 (271)
385 cd03026 AhpF_NTD_C TRX-GRX-lik 61.6 29 0.00063 28.1 6.2 33 283-318 39-71 (89)
386 PF00837 T4_deiodinase: Iodoth 60.0 24 0.00051 34.3 6.1 41 145-186 100-140 (237)
387 cd03011 TlpA_like_ScsD_MtbDsbE 59.3 45 0.00097 28.2 7.4 39 299-341 81-119 (123)
388 cd02977 ArsC_family Arsenate R 58.9 6.1 0.00013 33.1 1.8 32 152-190 2-33 (105)
389 cd03031 GRX_GRX_like Glutaredo 58.4 17 0.00038 32.6 4.7 59 151-222 2-74 (147)
390 COG5552 Uncharacterized conser 54.4 41 0.00089 26.1 5.3 44 19-62 3-46 (88)
391 PF14687 DUF4460: Domain of un 54.2 25 0.00055 30.0 4.8 46 29-74 4-54 (112)
392 TIGR01617 arsC_related transcr 54.2 13 0.00029 31.7 3.2 34 152-192 2-35 (117)
393 KOG2792|consensus 53.8 49 0.0011 32.5 7.0 45 193-237 217-276 (280)
394 TIGR02654 circ_KaiB circadian 53.7 69 0.0015 26.0 6.8 61 149-210 4-64 (87)
395 KOG0908|consensus 53.7 69 0.0015 31.3 8.0 55 286-347 51-105 (288)
396 PRK09301 circadian clock prote 53.4 77 0.0017 26.5 7.3 80 148-228 6-85 (103)
397 cd03059 GST_N_SspA GST_N famil 52.7 27 0.00058 26.4 4.4 70 152-235 2-72 (73)
398 cd03009 TryX_like_TryX_NRX Try 52.0 50 0.0011 28.4 6.6 23 301-324 89-111 (131)
399 COG1331 Highly conserved prote 51.2 28 0.0006 38.9 5.6 80 133-216 32-122 (667)
400 PRK01655 spxA transcriptional 51.0 16 0.00035 32.1 3.2 35 151-192 2-36 (131)
401 PF11346 DUF3149: Protein of u 50.5 20 0.00044 24.7 2.9 27 526-552 13-39 (42)
402 PRK03147 thiol-disulfide oxido 49.7 1.6E+02 0.0034 26.5 9.8 42 369-412 62-104 (173)
403 COG4545 Glutaredoxin-related p 49.0 22 0.00048 27.7 3.2 56 152-216 5-76 (85)
404 PHA02125 thioredoxin-like prot 48.8 38 0.00083 26.2 4.7 26 289-317 26-51 (75)
405 PRK14750 kdpF potassium-transp 46.5 38 0.00082 21.1 3.2 24 528-551 5-28 (29)
406 cd03037 GST_N_GRX2 GST_N famil 45.7 37 0.0008 25.6 4.2 68 153-233 3-70 (71)
407 cd03051 GST_N_GTT2_like GST_N 45.3 45 0.00098 25.0 4.7 52 152-209 2-57 (74)
408 PF04639 Baculo_E56: Baculovir 45.0 14 0.0003 36.5 2.0 24 521-544 275-298 (305)
409 PF10041 DUF2277: Uncharacteri 45.0 69 0.0015 25.1 5.3 53 20-72 4-60 (78)
410 cd03036 ArsC_like Arsenate Red 44.0 18 0.00038 30.7 2.3 51 152-210 2-56 (111)
411 PF13743 Thioredoxin_5: Thiore 43.0 25 0.00055 32.5 3.4 33 153-186 2-34 (176)
412 cd03035 ArsC_Yffb Arsenate Red 43.0 17 0.00037 30.5 2.0 33 152-191 2-34 (105)
413 PRK14748 kdpF potassium-transp 42.6 45 0.00098 20.8 3.1 26 526-551 3-28 (29)
414 PF07689 KaiB: KaiB domain; I 41.4 12 0.00026 30.0 0.8 55 155-210 4-58 (82)
415 cd00570 GST_N_family Glutathio 41.3 36 0.00078 24.7 3.5 51 153-209 3-55 (71)
416 KOG3171|consensus 40.4 1.3E+02 0.0027 28.8 7.3 103 241-349 140-252 (273)
417 cd03061 GST_N_CLIC GST_N famil 39.3 1.1E+02 0.0023 25.1 6.0 70 157-239 20-89 (91)
418 PRK12559 transcriptional regul 36.9 31 0.00068 30.2 2.8 34 151-191 2-35 (131)
419 cd02978 KaiB_like KaiB-like fa 36.4 1.5E+02 0.0032 23.2 6.0 57 373-439 5-62 (72)
420 PF13728 TraF: F plasmid trans 36.2 1.1E+02 0.0023 29.4 6.6 41 300-342 172-212 (215)
421 cd03032 ArsC_Spx Arsenate Redu 36.2 41 0.0009 28.6 3.4 33 152-191 3-35 (115)
422 cd02966 TlpA_like_family TlpA- 35.6 2.3E+02 0.0049 22.6 8.5 42 370-413 21-63 (116)
423 COG0386 BtuE Glutathione perox 34.5 2.7E+02 0.0059 25.2 8.2 44 146-190 24-67 (162)
424 COG4232 Thiol:disulfide interc 34.4 1.1E+02 0.0024 33.7 6.9 60 285-347 506-567 (569)
425 cd03023 DsbA_Com1_like DsbA fa 33.7 56 0.0012 28.6 4.0 36 191-232 118-153 (154)
426 cd03045 GST_N_Delta_Epsilon GS 33.7 86 0.0019 23.6 4.6 68 152-233 2-73 (74)
427 PRK14018 trifunctional thiored 33.1 1.6E+02 0.0036 32.3 8.1 45 299-346 127-171 (521)
428 TIGR02654 circ_KaiB circadian 33.0 1E+02 0.0023 24.9 4.9 60 373-442 8-67 (87)
429 PF01323 DSBA: DSBA-like thior 32.7 71 0.0015 29.4 4.7 38 191-233 156-193 (193)
430 PF07739 TipAS: TipAS antibiot 32.5 1E+02 0.0022 25.9 5.2 51 26-84 51-103 (118)
431 KOG3414|consensus 31.9 3.5E+02 0.0076 23.6 10.0 116 351-480 4-125 (142)
432 cd03055 GST_N_Omega GST_N fami 31.6 1.2E+02 0.0026 24.2 5.3 53 151-209 19-72 (89)
433 PF13905 Thioredoxin_8: Thiore 31.6 1.3E+02 0.0028 23.9 5.6 47 370-418 3-51 (95)
434 PF00255 GSHPx: Glutathione pe 31.2 2E+02 0.0043 24.3 6.6 44 146-190 20-63 (108)
435 KOG0860|consensus 30.9 2.1E+02 0.0045 24.5 6.5 57 468-533 46-107 (116)
436 PF14595 Thioredoxin_9: Thiore 30.6 1.2E+02 0.0025 26.6 5.3 75 368-451 41-117 (129)
437 PF13778 DUF4174: Domain of un 30.4 2.5E+02 0.0055 24.0 7.3 87 146-234 9-110 (118)
438 KOG3442|consensus 29.9 1.2E+02 0.0026 26.2 5.0 53 21-76 61-113 (132)
439 PHA02513 V1 structural protein 29.5 1.7E+02 0.0038 24.6 5.7 44 501-544 40-85 (135)
440 PRK09301 circadian clock prote 29.2 1.3E+02 0.0028 25.3 4.9 60 373-442 11-70 (103)
441 PF05545 FixQ: Cbb3-type cytoc 28.8 71 0.0015 22.6 3.0 19 532-550 16-34 (49)
442 TIGR03092 SASP_sspI small, aci 28.7 75 0.0016 24.1 3.1 40 460-521 11-51 (65)
443 COG1651 DsbG Protein-disulfide 28.7 93 0.002 30.1 5.0 31 146-176 83-113 (244)
444 COG1999 Uncharacterized protei 28.1 1.4E+02 0.003 28.4 5.9 55 146-200 66-127 (207)
445 cd02964 TryX_like_family Trypa 28.0 1.9E+02 0.0041 24.9 6.3 22 301-323 89-110 (132)
446 PF12434 Malate_DH: Malate deh 27.6 69 0.0015 19.7 2.2 17 33-49 10-26 (28)
447 cd02974 AhpF_NTD_N Alkyl hydro 26.8 3.5E+02 0.0077 22.1 8.0 71 147-233 19-91 (94)
448 CHL00185 ycf59 magnesium-proto 26.8 90 0.002 31.7 4.3 71 2-72 229-305 (351)
449 PRK13344 spxA transcriptional 26.6 54 0.0012 28.8 2.5 33 152-191 3-35 (132)
450 TIGR00385 dsbE periplasmic pro 26.0 3.3E+02 0.0071 24.7 7.9 45 299-346 125-169 (173)
451 PF07709 SRR: Seven Residue Re 25.3 46 0.00099 17.1 1.1 13 60-72 2-14 (14)
452 PF09125 COX2-transmemb: Cytoc 24.7 1.1E+02 0.0024 20.3 2.9 19 526-544 18-36 (38)
453 KOG2501|consensus 24.5 1.3E+02 0.0028 27.3 4.5 25 299-324 103-127 (157)
454 PF13743 Thioredoxin_5: Thiore 24.5 46 0.00099 30.8 1.8 20 191-211 136-155 (176)
455 KOG1422|consensus 24.2 3E+02 0.0065 26.3 7.0 73 158-243 20-92 (221)
456 PF09673 TrbC_Ftype: Type-F co 24.1 1.5E+02 0.0032 25.2 4.7 45 164-212 36-80 (113)
457 PF06053 DUF929: Domain of unk 23.9 1.4E+02 0.0029 29.4 4.9 22 145-166 56-77 (249)
458 KOG0911|consensus 23.8 1.5E+02 0.0032 28.6 4.9 57 156-222 151-208 (227)
459 PRK13654 magnesium-protoporphy 23.3 1.2E+02 0.0027 30.9 4.5 71 2-72 233-309 (355)
460 cd02991 UAS_ETEA UAS family, E 22.9 4.7E+02 0.01 22.2 9.6 86 258-344 15-109 (116)
461 COG2143 Thioredoxin-related pr 22.6 1.3E+02 0.0029 27.3 4.1 26 299-325 103-128 (182)
462 PF02630 SCO1-SenC: SCO1/SenC; 22.4 1.5E+02 0.0032 27.3 4.7 54 146-199 51-110 (174)
463 PF02645 DegV: Uncharacterised 22.2 3.2E+02 0.007 27.2 7.5 101 191-295 13-116 (280)
464 cd01047 ACSF Aerobic Cyclase S 22.1 1.4E+02 0.0031 29.9 4.7 71 2-72 213-289 (323)
465 TIGR02029 AcsF magnesium-proto 21.5 1.4E+02 0.003 30.2 4.5 70 2-71 223-298 (337)
466 PRK09481 sspA stringent starva 21.1 3.1E+02 0.0068 25.7 6.9 78 148-239 8-86 (211)
467 KOG1672|consensus 20.8 3.7E+02 0.008 25.4 6.8 37 285-324 113-149 (211)
468 PF08806 Sep15_SelM: Sep15/Sel 20.5 1.1E+02 0.0023 24.3 2.8 35 312-347 41-75 (78)
469 TIGR02742 TrbC_Ftype type-F co 20.2 1.7E+02 0.0037 25.7 4.3 27 187-214 56-82 (130)
470 PRK02955 small acid-soluble sp 20.2 1.3E+02 0.0028 23.1 3.0 39 460-520 14-53 (68)
471 PRK11875 psbT photosystem II r 20.1 1.5E+02 0.0032 18.9 2.8 16 528-543 3-18 (31)
472 PF05552 TM_helix: Conserved T 20.1 1.1E+02 0.0023 22.0 2.6 27 521-547 9-35 (53)
No 1
>KOG0190|consensus
Probab=100.00 E-value=9.6e-42 Score=352.80 Aligned_cols=349 Identities=16% Similarity=0.236 Sum_probs=282.4
Q ss_pred ccccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCC--CEEEEEEEecCcHHHHHHhCCcC
Q psy16770 125 SLFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPL--GVGFFTVHVHNEQGLARRLGVGS 202 (554)
Q Consensus 125 ~~~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~--~v~~~~Vd~~~~~~l~~~~~v~~ 202 (554)
....+++||.+||+..| ..+..++|+||||||+||++++|+|+++|+.|+.. .+.+++|||+.+..+|++|+|+|
T Consensus 23 ~~~~Vl~Lt~dnf~~~i---~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~g 99 (493)
T KOG0190|consen 23 AEEDVLVLTKDNFKETI---NGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRG 99 (493)
T ss_pred cccceEEEecccHHHHh---ccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCC
Confidence 34579999999999999 57889999999999999999999999999999854 69999999999999999999998
Q ss_pred CCCcceeccCCeE-EEEeCCcccHHHHHHHHHHhCCCCccccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHHh
Q psy16770 203 QLPQIALLTDGRT-SFFKEPSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINA 281 (554)
Q Consensus 203 ~~Pti~~~~~g~~-~~y~~g~~~~~~i~~fl~~~~~~~~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~a 281 (554)
|||+++|+||.. ..|.|+ |++++|+.||+++.+|+...+-+.++++.|+.. ....++++|.+.....-.++..+
T Consensus 100 -yPTlkiFrnG~~~~~Y~G~-r~adgIv~wl~kq~gPa~~~l~~~~~a~~~l~~---~~~~vig~F~d~~~~~~~~~~~a 174 (493)
T KOG0190|consen 100 -YPTLKIFRNGRSAQDYNGP-READGIVKWLKKQSGPASKTLKTVDEAEEFLSK---KDVVVIGFFKDLESLAESFFDAA 174 (493)
T ss_pred -CCeEEEEecCCcceeccCc-ccHHHHHHHHHhccCCCceecccHHHHHhhccC---CceEEEEEecccccchHHHHHHH
Confidence 999999999995 777766 589999999999999996656577889999963 45566667766665555566666
Q ss_pred hccCCceEEEEEEccCCCChhHHhHhCCCCC-CceEEEEeCCCCCCCceeecCCCChhHHHhHHhcCCCcccccccchhh
Q psy16770 282 FKHRTTIVFGVIVYDQEDSSSVFQRFKVPGD-KDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRISSQSM 360 (554)
Q Consensus 282 ~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~-~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~~~~~v~~lt~~~~ 360 (554)
..+++++.|+++ ++.+++++++++.+ .+.++++++..+.... +.+++..+.|.+||..+++|++.++|.++.
T Consensus 175 ~~l~~d~~F~~t-----s~~~~~~~~~~~~~~~~~i~l~kk~d~~~~~--~~~~~~~~~l~~Fi~~~~~plv~~ft~~~~ 247 (493)
T KOG0190|consen 175 SKLRDDYKFAHT-----SDSDVAKKLELNTEGTFPIVLFKKFDELLVK--YDGSFTPELLKKFIQENSLPLVTEFTVANN 247 (493)
T ss_pred Hhccccceeecc-----CcHhHHhhccCCCCCcceEEeccccccchhh--cccccCHHHHHHHHHHhcccccceeccccc
Confidence 688999999977 78999999998721 3448888876665433 478899999999999999999999997543
Q ss_pred ---hhhcCCCCceEEEEEcC-CCCcchhHHHHHHHHHhhccCCCCceEEEEEecccchHHHHhhCCCCCCccccceEEEE
Q psy16770 361 ---LDAVCPVKKLCVVLFSE-DSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPEDSSEISLHIAAM 436 (554)
Q Consensus 361 ---~~~~c~~~~lcvvl~~~-~~~~~~~~~~~l~~~a~~~~~~~~~v~F~~vd~~~q~~~~~~~~~~~~~~~~~~~~~~v 436 (554)
+.... .+-++++.. ...+.+.+++.++++|++ |++ .++|+++|.+..+..++.| |..+.... +.+
T Consensus 248 ~~~~~~~~---~~~~~~~~~~~~~~~e~~~~~~~~vAk~--f~~-~l~Fi~~d~e~~~~~~~~~----Gl~~~~~~-~~~ 316 (493)
T KOG0190|consen 248 AKIYSSFV---KLGLDFFVFFKCNRFEELRKKFEEVAKK--FKG-KLRFILIDPESFARVLEFF----GLEEEQLP-IRA 316 (493)
T ss_pred ceeecccc---ccceeEEeccccccHHHHHHHHHHHHHh--ccc-ceEEEEEChHHhhHHHHhc----CcccccCC-eeE
Confidence 33322 344555542 223778999999999999 986 6999999998877777777 21111122 445
Q ss_pred EEecCCCeeEEEecCCCCCcccccchhhHHHHHHHHhhhcCCCCCccccccccchhh-hhhhHHHHHHHHHHH
Q psy16770 437 WRMDYKKIKYGWLLGDAVDDWKDYNTTKDRLDAGLRSLVNDPYNNLLYDTALKEISD-EYIQSLGVRIFNRIF 508 (554)
Q Consensus 437 ~~~~~~~~ky~~~~~~~~~~~~~~~~t~e~l~~fl~~~~~g~~~~~~~~~~lp~~~d-e~~~~~~~r~~~~~~ 508 (554)
+..+.++.||.+-.+ +.+.++|.+|+.+++.|+.+|..+++++|+-+| .++..+|+++|+.++
T Consensus 317 v~~~~~~~Ky~~~~e---------~~~~~~ie~f~~~~l~Gk~~p~~kSqpiPe~~~~~pVkvvVgknfd~iv 380 (493)
T KOG0190|consen 317 VILNEDGSKYPLEEE---------ELDQENIESFVKDFLDGKVKPHLKSQPIPEDNDRSPVKVVVGKNFDDIV 380 (493)
T ss_pred EeeccccccccCccc---------cccHHHHHHHHHHHhcCccccccccCCCCcccccCCeEEEeecCHHHHh
Confidence 556677788854333 467789999999999999999999999999999 889999999999844
No 2
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=100.00 E-value=2.6e-31 Score=286.27 Aligned_cols=347 Identities=18% Similarity=0.275 Sum_probs=256.2
Q ss_pred cccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCC--EEEEEEEecCcHHHHHHhCCcCCCC
Q psy16770 128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLG--VGFFTVHVHNEQGLARRLGVGSQLP 205 (554)
Q Consensus 128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~--v~~~~Vd~~~~~~l~~~~~v~~~~P 205 (554)
++++||.++|++.+ ..+++++|.||||||++|+++.|.|.++++.+++.+ +.+++|||+.+..+|++++|.+ +|
T Consensus 2 ~v~~l~~~~~~~~i---~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~-~P 77 (462)
T TIGR01130 2 DVLVLTKDNFDDFI---KSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSG-YP 77 (462)
T ss_pred CceECCHHHHHHHH---hcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCcc-cc
Confidence 57889999999988 356799999999999999999999999999987544 9999999999999999999997 99
Q ss_pred cceeccCCeE--EEEeCCcccHHHHHHHHHHhCCCCccccCCcccHHHHHhhhhcCCceEEEEE-ecCCchhHHHHHHhh
Q psy16770 206 QIALLTDGRT--SFFKEPSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWREDNKVHALLF-QRSLPVRLRYLINAF 282 (554)
Q Consensus 206 ti~~~~~g~~--~~y~~g~~~~~~i~~fl~~~~~~~~v~~~t~~~~~~fl~~~~~~~~~~v~~f-~~~~~~~~~~~~~a~ 282 (554)
|+++|++|+. ..|.|. ++.+.|.+|+.+.+++......+.++++.|+.. +.+.+++| .+..+.....+...+
T Consensus 78 t~~~~~~g~~~~~~~~g~-~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~----~~~~vi~~~~~~~~~~~~~~~~~a 152 (462)
T TIGR01130 78 TLKIFRNGEDSVSDYNGP-RDADGIVKYMKKQSGPAVKEIETVADLEAFLAD----DDVVVIGFFKDLDSELNDTFLSVA 152 (462)
T ss_pred EEEEEeCCccceeEecCC-CCHHHHHHHHHHhcCCCceeecCHHHHHHHHhc----CCcEEEEEECCCCcHHHHHHHHHH
Confidence 9999999986 566654 688999999999999885444456889999853 44545544 443333333333333
Q ss_pred -ccCCceE-EEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCCC--ChhHHHhHHhcCCCcccccccch
Q psy16770 283 -KHRTTIV-FGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSI--PVPTLQDITDNNPYLTLPRISSQ 358 (554)
Q Consensus 283 -~~~~~v~-Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~--~~~~l~~fi~~~~~~~v~~lt~~ 358 (554)
.+.+.+. |+.+ .+..+.+++++. .+++++|+...+......+.++. +.+.|.+||..+++|.+++++..
T Consensus 153 ~~~~~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fi~~~~~p~v~~~~~~ 225 (462)
T TIGR01130 153 EKLRDVYFFFAHS-----SDVAAFAKLGAF--PDSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIRAESLPLVGEFTQE 225 (462)
T ss_pred HHhhhccceEEec-----CCHHHHhhcCCC--CCcEEEecccccccccccccCcccCCHHHHHHHHHHcCCCceEeeCCc
Confidence 5555555 3333 466788888875 47788887644433223455554 44789999999999999999976
Q ss_pred hhhhhcCCCCceEEEEEcCCCC--cchhHHHHHHHHHhhccCCCCceEEEEEecccchHHHHhhCCCCCCccccceEEEE
Q psy16770 359 SMLDAVCPVKKLCVVLFSEDSP--EHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPEDSSEISLHIAAM 436 (554)
Q Consensus 359 ~~~~~~c~~~~lcvvl~~~~~~--~~~~~~~~l~~~a~~~~~~~~~v~F~~vd~~~q~~~~~~~~~~~~~~~~~~~~~~v 436 (554)
+..... ..+.++++++..+.. ..+...+.++++|++ +++..+.|+++|+.+...++..+... . ..+|.+
T Consensus 226 ~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~--~~~~~i~f~~~d~~~~~~~~~~~~~~----~--~~~P~~ 296 (462)
T TIGR01130 226 TAAKYF-ESGPLVVLYYNVDESLDPFEELRNRFLEAAKK--FRGKFVNFAVADEEDFGRELEYFGLK----A--EKFPAV 296 (462)
T ss_pred chhhHh-CCCCceeEEEEecCCchHHHHHHHHHHHHHHH--CCCCeEEEEEecHHHhHHHHHHcCCC----c--cCCceE
Confidence 654332 233445444433221 136788899999999 87547999999998888888877221 1 235544
Q ss_pred EEecCCC-eeEEEecCCCCCcccccchhhHHHHHHHHhhhcCCCCCccccccccchhhhhhhHHHHHHHHHHH
Q psy16770 437 WRMDYKK-IKYGWLLGDAVDDWKDYNTTKDRLDAGLRSLVNDPYNNLLYDTALKEISDEYIQSLGVRIFNRIF 508 (554)
Q Consensus 437 ~~~~~~~-~ky~~~~~~~~~~~~~~~~t~e~l~~fl~~~~~g~~~~~~~~~~lp~~~de~~~~~~~r~~~~~~ 508 (554)
...+..+ .+|. +.+. ..+.+.|.+|++++++|+..|..+++++|+-.+..+..+++..|.+++
T Consensus 297 vi~~~~~~~~y~-~~~~--------~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~f~~~v 360 (462)
T TIGR01130 297 AIQDLEGNKKYP-MDQE--------EFSSENLEAFVKDFLDGKLKPYLKSEPIPEDDEGPVKVLVGKNFDEIV 360 (462)
T ss_pred EEEeCCcccccC-CCcC--------CCCHHHHHHHHHHHhcCCCCeeeccCCCCccCCCccEEeeCcCHHHHh
Confidence 4445454 5674 3321 468899999999999999999888999998767777788888888743
No 3
>KOG4277|consensus
Probab=99.98 E-value=2.6e-31 Score=251.48 Aligned_cols=296 Identities=13% Similarity=0.201 Sum_probs=212.5
Q ss_pred CCCCcEEEEEEcccccccccchHHHHHHHHHhCCC--CEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCc
Q psy16770 145 SYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPL--GVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPS 222 (554)
Q Consensus 145 ~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~--~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~ 222 (554)
..+..|+|.||||||+|||+++|.|.++.-+|+.. .++++++||+..+.+++++||+| ||||++|++|..+.|.||+
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqG-YPTIk~~kgd~a~dYRG~R 119 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQG-YPTIKFFKGDHAIDYRGGR 119 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCC-CceEEEecCCeeeecCCCc
Confidence 46889999999999999999999999999999854 59999999999999999999998 9999999999999999886
Q ss_pred ccHHHHHHHHHHhCCCCccccCCcccHH-HHHhhhhcCCceEEEEEecCCchhHHHHHHhhccCCceEEEEEEccCCCCh
Q psy16770 223 FSVQKMVEFFRLKLPYKLIVPLSATNVD-AFLDNWREDNKVHALLFQRSLPVRLRYLINAFKHRTTIVFGVIVYDQEDSS 301 (554)
Q Consensus 223 ~~~~~i~~fl~~~~~~~~v~~~t~~~~~-~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~a~~~~~~v~Fg~v~~~~~~~~ 301 (554)
..++|++|..+...+- +..+++.+.+ .-++ ....+..++|.....|-...+..|+. ..+.+++... .++
T Consensus 120 -~Kd~iieFAhR~a~ai-I~pi~enQ~~fehlq---~Rhq~ffVf~Gtge~PL~d~fidAAS--e~~~~a~FfS---ase 189 (468)
T KOG4277|consen 120 -EKDAIIEFAHRCAAAI-IEPINENQIEFEHLQ---ARHQPFFVFFGTGEGPLFDAFIDAAS--EKFSVARFFS---ASE 189 (468)
T ss_pred -cHHHHHHHHHhcccce-eeecChhHHHHHHHh---hccCceEEEEeCCCCcHHHHHHHHhh--hheeeeeeec---ccc
Confidence 7799999999988766 6666554432 2232 46889999998777766655656652 3444444432 356
Q ss_pred hHHhHhCCCCCCceEEEEeCCCCCCCceeecCCCChhHHHhHHhcCCCcccccccchhhhhhcCCCCceEEEEEcCCCC-
Q psy16770 302 SVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRISSQSMLDAVCPVKKLCVVLFSEDSP- 380 (554)
Q Consensus 302 ~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~~~~~v~~lt~~~~~~~~c~~~~lcvvl~~~~~~- 380 (554)
+++..++--+..|.+.+||+..-. ++. +...+.|.+||+..++|..-..++..+.+..- .+++.++.+..+..
T Consensus 190 eVaPe~~~~kempaV~VFKDetf~----i~d-e~dd~dLseWinRERf~~fLa~dgflL~EiG~-sGKLVaLaVidEkhk 263 (468)
T KOG4277|consen 190 EVAPEENDAKEMPAVAVFKDETFE----IED-EGDDEDLSEWINRERFPGFLAADGFLLAEIGA-SGKLVALAVIDEKHK 263 (468)
T ss_pred ccCCcccchhhccceEEEccceeE----EEe-cCchhHHHHHHhHhhccchhhcccchHHHhCc-CCceEEEEEeccccc
Confidence 676666544458999999975332 222 23556799999999999999998877777653 55776666654331
Q ss_pred -----cchhHHHHHHHHHhhccCCC-----CceEEEEEecccchHHHHhhCCCCCCccccceEEEEEEecCCCeeEEEec
Q psy16770 381 -----EHDASRHTLRRFAQESRFVH-----NNIAFMYVFIEKQPEFVNALTSPEDSSEISLHIAAMWRMDYKKIKYGWLL 450 (554)
Q Consensus 381 -----~~~~~~~~l~~~a~~~~~~~-----~~v~F~~vd~~~q~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ky~~~~ 450 (554)
++.+......++|+. +++ ++++|+|+|+ .++++.+++.. ...|.+++.|.....|.+-+
T Consensus 264 ~nns~eh~~~~ki~eEaakd--~Rd~pdfh~dFQF~hlDG---nD~~nqilM~a------ls~P~l~i~NtsnqeYfLse 332 (468)
T KOG4277|consen 264 FNNSSEHREFHKIAEEAAKD--LRDHPDFHNDFQFAHLDG---NDLANQILMAA------LSEPHLFIFNTSNQEYFLSE 332 (468)
T ss_pred cCCcchhHHHHHHHHHHHHH--HHhChhhhhhceeeccch---hHHHHHHHHHh------hcCCeEEEEecCchheeecc
Confidence 222233344444444 442 3699999999 45566553332 35565666677888886543
Q ss_pred CCCCCcccccchhhHHHHHHHHhh
Q psy16770 451 GDAVDDWKDYNTTKDRLDAGLRSL 474 (554)
Q Consensus 451 ~~~~~~~~~~~~t~e~l~~fl~~~ 474 (554)
.. ..-.+.+.+..||+.-
T Consensus 333 ~d------~qikniedilqFient 350 (468)
T KOG4277|consen 333 DD------PQIKNIEDILQFIENT 350 (468)
T ss_pred CC------hhhhhHHHHHHHHhcc
Confidence 21 2345778888888873
No 4
>PTZ00102 disulphide isomerase; Provisional
Probab=99.97 E-value=5e-29 Score=269.81 Aligned_cols=335 Identities=16% Similarity=0.193 Sum_probs=245.4
Q ss_pred ccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCC--CCEEEEEEEecCcHHHHHHhCCcCCC
Q psy16770 127 FHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSP--LGVGFFTVHVHNEQGLARRLGVGSQL 204 (554)
Q Consensus 127 ~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~--~~v~~~~Vd~~~~~~l~~~~~v~~~~ 204 (554)
.++.+|+.++|+..+ +.+++++|.||||||++|+++.|.|.++++.++. .++.+++|||+.+..+|++++|.+ +
T Consensus 32 ~~v~~l~~~~f~~~i---~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~-~ 107 (477)
T PTZ00102 32 EHVTVLTDSTFDKFI---TENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRG-Y 107 (477)
T ss_pred CCcEEcchhhHHHHH---hcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCc-c
Confidence 468899999999988 4567999999999999999999999999988863 259999999999999999999998 9
Q ss_pred CcceeccCCeEEEEeCCcccHHHHHHHHHHhCCCCccccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHHhh-c
Q psy16770 205 PQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAF-K 283 (554)
Q Consensus 205 Pti~~~~~g~~~~y~~g~~~~~~i~~fl~~~~~~~~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~a~-~ 283 (554)
||+++|++|+.+.|.|+ ++++.|++|+.+.+.+++..+.+.+++..+... .....++.|.+........+..++ .
T Consensus 108 Pt~~~~~~g~~~~y~g~-~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~f~~~a~~ 183 (477)
T PTZ00102 108 PTIKFFNKGNPVNYSGG-RTADGIVSWIKKLTGPAVTEVESASEIKLIAKK---IFVAFYGEYTSKDSELYKKFEEVADK 183 (477)
T ss_pred cEEEEEECCceEEecCC-CCHHHHHHHHHHhhCCCceeecCHHHHHHhhcc---CcEEEEEEeccCCcHHHHHHHHHHHh
Confidence 99999999988766655 689999999999999884444344555554421 233444456555554444444444 6
Q ss_pred cCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCCCChhHHHhHHhcCCCcccccccchhhhhh
Q psy16770 284 HRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRISSQSMLDA 363 (554)
Q Consensus 284 ~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~~~~~v~~lt~~~~~~~ 363 (554)
+++...|+.+. +. . .+.+++++...... .+.+..+...|.+||+.+.+|.+.+++..++...
T Consensus 184 ~~~~~~F~~~~-----~~--------~--~~~~~~~~~~~~~~---~~~~~~~~~~l~~fI~~~~~P~~~~~~~~~~~~~ 245 (477)
T PTZ00102 184 HREHAKFFVKK-----HE--------G--KNKIYVLHKDEEGV---ELFMGKTKEELEEFVSTESFPLFAEINAENYRRY 245 (477)
T ss_pred ccccceEEEEc-----CC--------C--CCcEEEEecCCCCc---ccCCCCCHHHHHHHHHHcCCCceeecCccchHHH
Confidence 67778887662 11 1 46788887644432 2223457788999999999999999998876544
Q ss_pred cCCCCceEEEEEcCCCCcchhHHHHHHHHHhhccCCCCceEEEEEecccchH-HHHhhCCCCCCccccceEEEEEEecCC
Q psy16770 364 VCPVKKLCVVLFSEDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPE-FVNALTSPEDSSEISLHIAAMWRMDYK 442 (554)
Q Consensus 364 ~c~~~~lcvvl~~~~~~~~~~~~~~l~~~a~~~~~~~~~v~F~~vd~~~q~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~ 442 (554)
. ..+..++++....++.++..+.++++|++ ++++ +.|+|+|+.+... +++.|-. ..+|.+...+.
T Consensus 246 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~--~~~~-~~f~~vd~~~~~~~~~~~~gi--------~~~P~~~i~~~- 311 (477)
T PTZ00102 246 I--SSGKDLVWFCGTTEDYDKYKSVVRKVARK--LREK-YAFVWLDTEQFGSHAKEHLLI--------EEFPGLAYQSP- 311 (477)
T ss_pred h--cCCccEEEEecCHHHHHHHHHHHHHHHHh--ccCc-eEEEEEechhcchhHHHhcCc--------ccCceEEEEcC-
Confidence 3 22344455544444556788899999999 9754 9999999987665 5666511 13454444332
Q ss_pred CeeEEEecCCCCCcccccchhhHHHHHHHHhhhcCCCCCccccccccchhhhhhhHHHHHHHHHH
Q psy16770 443 KIKYGWLLGDAVDDWKDYNTTKDRLDAGLRSLVNDPYNNLLYDTALKEISDEYIQSLGVRIFNRI 507 (554)
Q Consensus 443 ~~ky~~~~~~~~~~~~~~~~t~e~l~~fl~~~~~g~~~~~~~~~~lp~~~de~~~~~~~r~~~~~ 507 (554)
..+|. +.+. .....|.+.|.+|++++++|+..+..+++++|+-++..++.+++..|.+.
T Consensus 312 ~~~y~-~~~~-----~~~~~~~~~l~~Fv~~~~~gk~~~~~~se~~p~~~~~~v~~l~~~~f~~~ 370 (477)
T PTZ00102 312 AGRYL-LPPA-----KESFDSVEALIEFFKDVEAGKVEKSIKSEPIPEEQDGPVKVVVGNTFEEI 370 (477)
T ss_pred CcccC-CCcc-----ccccCCHHHHHHHHHHHhCCCCCcccccCCCCCCCCCCeEEecccchHHH
Confidence 34664 3321 00125789999999999999999888888999887888888888888874
No 5
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=99.94 E-value=5.9e-25 Score=213.88 Aligned_cols=327 Identities=16% Similarity=0.187 Sum_probs=227.6
Q ss_pred ccccccccccccccccCCCCCCcEEEEEEcccccccccc-------hHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhC
Q psy16770 127 FHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQV-------EPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLG 199 (554)
Q Consensus 127 ~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l-------~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~ 199 (554)
+.+++||.+||.+++ +......|.||.|-- ..+.. +-.++-+|+.+...|++||.||..++..+|+++|
T Consensus 34 DRVi~LneKNfk~~l---Kkyd~l~l~yh~p~~-~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLg 109 (383)
T PF01216_consen 34 DRVIDLNEKNFKRAL---KKYDVLVLYYHEPVE-SDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLG 109 (383)
T ss_dssp --CEEE-TTTHHHHH---HH-SEEEEEEE--ST-SSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT
T ss_pred cceEEcchhHHHHHH---HhhcEEEEEEecCCc-cCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcC
Confidence 458999999999988 456677888887763 33332 2345667888888899999999999999999999
Q ss_pred CcCCCCcceeccCCeEEEEeCCcccHHHHHHHHHHhCCCCccccCCc-ccHHHHHhhhhcCCceEEEEEecCCchhHHHH
Q psy16770 200 VGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYKLIVPLSA-TNVDAFLDNWREDNKVHALLFQRSLPVRLRYL 278 (554)
Q Consensus 200 v~~~~Pti~~~~~g~~~~y~~g~~~~~~i~~fl~~~~~~~~v~~~t~-~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~ 278 (554)
+.. .++|.+|++|+.+.|.| .++++.|+.|+...+..+ |.+++. .++..|-.- ++...++++|.+..+..+..+
T Consensus 110 v~E-~~SiyVfkd~~~IEydG-~~saDtLVeFl~dl~edP-VeiIn~~~e~~~Fe~i--ed~~klIGyFk~~~s~~yk~F 184 (383)
T PF01216_consen 110 VEE-EGSIYVFKDGEVIEYDG-ERSADTLVEFLLDLLEDP-VEIINNKHELKAFERI--EDDIKLIGYFKSEDSEHYKEF 184 (383)
T ss_dssp --S-TTEEEEEETTEEEEE-S---SHHHHHHHHHHHHSSS-EEEE-SHHHHHHHHH----SS-EEEEE-SSTTSHHHHHH
T ss_pred ccc-cCcEEEEECCcEEEecC-ccCHHHHHHHHHHhcccc-hhhhcChhhhhhhhhc--ccceeEEEEeCCCCcHHHHHH
Confidence 996 99999999999999995 569999999999999988 665544 566666542 345455556777677788888
Q ss_pred HHhh-ccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCCCChhHHHhHHhcCCCcccccccc
Q psy16770 279 INAF-KHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRISS 357 (554)
Q Consensus 279 ~~a~-~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~~~~~v~~lt~ 357 (554)
..|+ .+.+.++|..+ .+..++++++++ ...+-+|++..++|.. +.....+...|.+||+.|+-|.+.+|+.
T Consensus 185 eeAAe~F~p~IkFfAt-----fd~~vAk~L~lK--~nev~fyepF~~~pi~-ip~~p~~e~e~~~fi~~h~rptlrkl~~ 256 (383)
T PF01216_consen 185 EEAAEHFQPYIKFFAT-----FDKKVAKKLGLK--LNEVDFYEPFMDEPIT-IPGKPYTEEELVEFIEEHKRPTLRKLRP 256 (383)
T ss_dssp HHHHHHCTTTSEEEEE------SHHHHHHHT-S--TT-EEEE-TTSSSEEE-ESSSS--HHHHHHHHHHT-S-SEEE--G
T ss_pred HHHHHhhcCceeEEEE-----ecchhhhhcCcc--ccceeeeccccCCCcc-CCCCCCCHHHHHHHHHHhchhHhhhCCh
Confidence 8888 88999999998 799999999997 6789999999888863 5556778889999999999999999999
Q ss_pred hhhhhhcCC-CCceEEEEEcC-CCCcchhHHHHHHHHHhhccCCCC-ceEEEEEecccchHHHHhhCCCCC-CccccceE
Q psy16770 358 QSMLDAVCP-VKKLCVVLFSE-DSPEHDASRHTLRRFAQESRFVHN-NIAFMYVFIEKQPEFVNALTSPED-SSEISLHI 433 (554)
Q Consensus 358 ~~~~~~~c~-~~~lcvvl~~~-~~~~~~~~~~~l~~~a~~~~~~~~-~v~F~~vd~~~q~~~~~~~~~~~~-~~~~~~~~ 433 (554)
.++++..-. ..+..+|.|+. ++++.-+..+.|+++|+. +++. .+.++|||-+..+-+....-...+ ... .|++
T Consensus 257 ~~m~e~Wedd~~g~hIvaFaee~dpdG~efleilk~va~~--nt~np~LsivwIDPD~fPllv~yWE~tF~Idl~-~PqI 333 (383)
T PF01216_consen 257 EDMFETWEDDIDGIHIVAFAEEEDPDGFEFLEILKQVARD--NTDNPDLSIVWIDPDDFPLLVPYWEKTFGIDLS-RPQI 333 (383)
T ss_dssp GGHHHHHHSSSSSEEEEEE--TTSHHHHHHHHHHHHHHHH--CTT-TT--EEEE-GGG-HHHHHHHHHHHTT-TT-S-EE
T ss_pred hhhhhhhcccCCCceEEEEecCCCCchHHHHHHHHHHHHh--cCcCCceeEEEECCCCCchhHHHHHhhcCcccc-CCce
Confidence 999886652 23788888885 456778889999999998 6543 699999999887754443311112 111 2788
Q ss_pred EEEEEecCCCeeEEEecCCCCCcccccchhhHHHHHHHHhhhcCCCC
Q psy16770 434 AAMWRMDYKKIKYGWLLGDAVDDWKDYNTTKDRLDAGLRSLVNDPYN 480 (554)
Q Consensus 434 ~~v~~~~~~~~ky~~~~~~~~~~~~~~~~t~e~l~~fl~~~~~g~~~ 480 (554)
-+|...+.+..++.+-+.. ..-|.+.|+.|++++++|++.
T Consensus 334 GvVnvtdadsvW~dm~d~~-------d~pt~~~LedWieDVlsg~i~ 373 (383)
T PF01216_consen 334 GVVNVTDADSVWMDMDDDD-------DLPTAEELEDWIEDVLSGKIN 373 (383)
T ss_dssp EEEETTTSEEEEC-STTTS-------S---HHHHHHHHHHHHCTCCT
T ss_pred eEEeccccccchhccCCcc-------cCCcHHHHHHHHHHHhcCCCC
Confidence 7877766666666543321 123889999999999999986
No 6
>KOG0912|consensus
Probab=99.92 E-value=4.6e-24 Score=203.31 Aligned_cols=315 Identities=15% Similarity=0.168 Sum_probs=212.5
Q ss_pred cccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhC----CCCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770 132 TTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELS----PLGVGFFTVHVHNEQGLARRLGVGSQLPQI 207 (554)
Q Consensus 132 Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~----~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti 207 (554)
+|..|++..+ .+...++|.|||+||+.++.+.|.|+++|..++ ...+..|+|||+++..++.+|.|+. |||+
T Consensus 1 lt~~N~~~il---~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~K-yPTl 76 (375)
T KOG0912|consen 1 LTSENIDSIL---DSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINK-YPTL 76 (375)
T ss_pred CccccHHHhh---ccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhcccc-Ccee
Confidence 4567777777 468899999999999999999999999998876 2359999999999999999999995 9999
Q ss_pred eeccCCeEE--EEeCCcccHHHHHHHHHHhCCCCccccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHHhh-cc
Q psy16770 208 ALLTDGRTS--FFKEPSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAF-KH 284 (554)
Q Consensus 208 ~~~~~g~~~--~y~~g~~~~~~i~~fl~~~~~~~~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~a~-~~ 284 (554)
++|+||... +|.| .|+.+.|.+|+++++..++-+..+-+++..... .....++++|.++.++++..+..++ -+
T Consensus 77 KvfrnG~~~~rEYRg-~RsVeaL~efi~kq~s~~i~Ef~sl~~l~n~~~---p~K~~vIgyF~~kdspey~~~~kva~~l 152 (375)
T KOG0912|consen 77 KVFRNGEMMKREYRG-QRSVEALIEFIEKQLSDPINEFESLDQLQNLDI---PSKRTVIGYFPSKDSPEYDNLRKVASLL 152 (375)
T ss_pred eeeeccchhhhhhcc-chhHHHHHHHHHHHhccHHHHHHhHHHHHhhhc---cccceEEEEeccCCCchHHHHHHHHHHH
Confidence 999999864 5665 469999999999999887322223344444432 1356777888888999888877666 66
Q ss_pred CCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCCCCh-hHHHhHHhcCCCcccccccchhhhhh
Q psy16770 285 RTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPV-PTLQDITDNNPYLTLPRISSQSMLDA 363 (554)
Q Consensus 285 ~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~-~~l~~fi~~~~~~~v~~lt~~~~~~~ 363 (554)
++++.|-+-- .++.....-. .-.+++|.++...+. ..+.|.++. ..+..||.....|+|.|+|-+|..+.
T Consensus 153 r~dc~f~V~~------gD~~~~~~~~--~~~~~~f~pd~~~~~-~~f~G~~~nf~el~~Wi~dKcvpLVREiTFeN~EEL 223 (375)
T KOG0912|consen 153 RDDCVFLVGF------GDLLKPHEPP--GKNILVFDPDHSEPN-HEFLGSMTNFDELKQWIQDKCVPLVREITFENAEEL 223 (375)
T ss_pred hhccEEEeec------cccccCCCCC--CCceEEeCCCcCCcC-cccccccccHHHHHHHHHhcchhhhhhhhhccHHHH
Confidence 8888875441 1222222211 122677776544443 256777755 48999999999999999998887655
Q ss_pred cCCCCceEEEEEcCCCCcchhHHHHHHHHHhhccCC-CCceEEEEEecccchHHHHhhCCCCCCccccceEEEEEEecCC
Q psy16770 364 VCPVKKLCVVLFSEDSPEHDASRHTLRRFAQESRFV-HNNIAFMYVFIEKQPEFVNALTSPEDSSEISLHIAAMWRMDYK 442 (554)
Q Consensus 364 ~c~~~~lcvvl~~~~~~~~~~~~~~l~~~a~~~~~~-~~~v~F~~vd~~~q~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 442 (554)
.- .+...+|+|-.. +..+..+.|.......... ...+.|...|+.....-+.-|-+ +. ..+|++.+ +.-
T Consensus 224 tE-EGlPflILf~~k--dD~~s~k~F~~aI~ReL~~e~~~in~l~ADG~~f~hpL~HlgK---s~---~DLPviaI-DsF 293 (375)
T KOG0912|consen 224 TE-EGLPFLILFRKK--DDKESEKIFKNAIARELDDETLAINFLTADGKVFKHPLRHLGK---SP---DDLPVIAI-DSF 293 (375)
T ss_pred hh-cCCceEEEEecC--CcccHHHHHHHHHHHHhhhhhhccceeecCcceecchHHHhCC---Cc---ccCcEEEe-ecc
Confidence 43 222334444332 2233444555443322111 12389999999776655555511 12 36776655 333
Q ss_pred CeeEEEecCCCCCcccccchhhHHHHHHHHhhhcCCCC
Q psy16770 443 KIKYGWLLGDAVDDWKDYNTTKDRLDAGLRSLVNDPYN 480 (554)
Q Consensus 443 ~~ky~~~~~~~~~~~~~~~~t~e~l~~fl~~~~~g~~~ 480 (554)
+.-|-..+. ..-...-.|.+|+.++-+|+..
T Consensus 294 ~Hmylfp~f-------~di~~pGkLkqFv~DL~sgklH 324 (375)
T KOG0912|consen 294 RHMYLFPDF-------NDINIPGKLKQFVADLHSGKLH 324 (375)
T ss_pred ceeeecCch-------hhhcCccHHHHHHHHHhCchhh
Confidence 444421111 0112445899999999999864
No 7
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=5.4e-25 Score=220.94 Aligned_cols=73 Identities=47% Similarity=0.774 Sum_probs=69.7
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCCCC
Q psy16770 17 VSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-DPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTDGF 89 (554)
Q Consensus 17 ~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~-~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~~~ 89 (554)
...|||+||||+++||.+|||+|||+||++||||+|+ +++|+++|++|++||+|||||++|++||+||..+..
T Consensus 2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~ 75 (371)
T COG0484 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFK 75 (371)
T ss_pred CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccc
Confidence 4689999999999999999999999999999999999 889999999999999999999999999999998733
No 8
>KOG0713|consensus
Probab=99.91 E-value=1.1e-24 Score=212.62 Aligned_cols=176 Identities=25% Similarity=0.297 Sum_probs=115.0
Q ss_pred HHHHhhccCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHcCChHHHHhhhccCCC
Q psy16770 8 LNVLFINCAVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-DPTAQEKFLQLTEAYNILSDAERRKQYDLFGTT 86 (554)
Q Consensus 8 ~~~~~~~~~~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~-~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~ 86 (554)
++...+.....+|||+||||+++|+..|||+|||+||+++|||||+ +|.|.+.|++|+.||+|||||++|+.||.+|..
T Consensus 5 ~~~~~~~v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEe 84 (336)
T KOG0713|consen 5 KLSGAEAVLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEE 84 (336)
T ss_pred hhhhhhhhhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHh
Confidence 3444444567899999999999999999999999999999999998 689999999999999999999999999999987
Q ss_pred CCCCCC--CCccccccCCCCCCCCccccCCCCCCccccccccccccccccccccccccCCCCCCcEEEEEEccccccccc
Q psy16770 87 DGFSGQ--DSASRNFHNHMYNPFDDVFSEGFNFPFEEHDISLFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQ 164 (554)
Q Consensus 87 ~~~~~~--~~~~~~~~~~~~~~f~~~f~~~~~f~f~~~~~~~~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~ 164 (554)
+-.... .+.+. .++..|.-.|+. |+++-.+...+.- . ....+++.++.-.|.||-.
T Consensus 85 gL~~~~~~~~~g~----~~~~~f~~~f~d---fg~~~~g~~~~e~------------~---~~g~~V~~~~e~~~~h~y~ 142 (336)
T KOG0713|consen 85 GLKDENKDGEGGG----GGNDIFSAFFGD---FGVTVGGNPLEEA------------L---PKGSDVSSDLEKQLEHFYM 142 (336)
T ss_pred hhcccccccccCC----cccchHHHhhcc---cccccCCCcccCC------------C---CCCceEEeehhhchhhhhc
Confidence 622211 11110 112222222222 1111111111000 1 3457888888899999998
Q ss_pred chHHHHHHHHHhCCCCEEEEEEEecCcHHHH-HHhCCcCCCCcce
Q psy16770 165 VEPIFKKLMDELSPLGVGFFTVHVHNEQGLA-RRLGVGSQLPQIA 208 (554)
Q Consensus 165 l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~-~~~~v~~~~Pti~ 208 (554)
..+.+....+.... ..-++..|.-...++ +..+... ++.+.
T Consensus 143 ~~~~e~~r~~~v~~--~~~g~~~~~~~~~~~~~~~~~g~-~~~~q 184 (336)
T KOG0713|consen 143 GNFVEEVREKGVYK--PAPGTRKCNCRLEMFTQQEGPGR-FQMLQ 184 (336)
T ss_pred ccHHHHHhccCcee--ecCcccccCChhhheeeccCCCh-hhhhh
Confidence 88888876654432 222344444433444 4444432 44444
No 9
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.83 E-value=5.4e-21 Score=164.17 Aligned_cols=102 Identities=18% Similarity=0.230 Sum_probs=89.0
Q ss_pred cccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHH-HHhCCcCCCCc
Q psy16770 128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA-RRLGVGSQLPQ 206 (554)
Q Consensus 128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~-~~~~v~~~~Pt 206 (554)
.+++|+.+||++.+.-.+.+++++|+||||||++|+.+.|.|+++++.+++. +.|++|||+++..+| ++|+|.+ +||
T Consensus 10 ~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~-v~~~~Vd~d~~~~l~~~~~~I~~-~PT 87 (113)
T cd03006 10 PVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ-VLFVAINCWWPQGKCRKQKHFFY-FPV 87 (113)
T ss_pred CeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEECCCChHHHHHhcCCcc-cCE
Confidence 5899999999987422367889999999999999999999999999999874 999999999999999 5899997 999
Q ss_pred ceeccCCeE-EEEeCCcccHHHHHHHH
Q psy16770 207 IALLTDGRT-SFFKEPSFSVQKMVEFF 232 (554)
Q Consensus 207 i~~~~~g~~-~~y~~g~~~~~~i~~fl 232 (554)
+++|++|+. ..|. |.++++.|+.|+
T Consensus 88 l~lf~~g~~~~~y~-G~~~~~~i~~~~ 113 (113)
T cd03006 88 IHLYYRSRGPIEYK-GPMRAPYMEKFV 113 (113)
T ss_pred EEEEECCccceEEe-CCCCHHHHHhhC
Confidence 999999875 4555 456889998874
No 10
>KOG0712|consensus
Probab=99.83 E-value=7.3e-21 Score=188.56 Aligned_cols=115 Identities=33% Similarity=0.534 Sum_probs=86.1
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCCCCCCCCCcc
Q psy16770 17 VSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTDGFSGQDSAS 96 (554)
Q Consensus 17 ~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~~~~~~~~~~ 96 (554)
.+..+|.||||+++||.+|||+|||+||++||||||++ +.++|++|.+||++||||++|..||++|..+-..++.+.
T Consensus 2 ~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~--~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~~~- 78 (337)
T KOG0712|consen 2 KNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD--AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGGGG- 78 (337)
T ss_pred cccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc--HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCCCC-
Confidence 46789999999999999999999999999999999976 789999999999999999999999999987632221211
Q ss_pred ccccCCCCCCCCccccCC-CCCCcccccccccccccccccccccc
Q psy16770 97 RNFHNHMYNPFDDVFSEG-FNFPFEEHDISLFHKLSTTHWNFEKN 140 (554)
Q Consensus 97 ~~~~~~~~~~f~~~f~~~-~~f~f~~~~~~~~~~~~Lt~~~F~~~ 140 (554)
++..|.+.|+.+ +..+-..++.+..|.+.+|.+++...
T Consensus 79 ------g~~~f~~~F~~g~~~~~~~~rg~~~~~~~~~~Le~~y~G 117 (337)
T KOG0712|consen 79 ------GFGGFSQFFGFGGNGGRGRQRGKDVVHQLKVTLEELYMG 117 (337)
T ss_pred ------CCccHHHhccCCCcCccccccCCCceEEEEEEHHHhhcC
Confidence 111144445533 11111124566678888887776543
No 11
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=8.6e-20 Score=189.10 Aligned_cols=70 Identities=47% Similarity=0.822 Sum_probs=67.1
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770 18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD 87 (554)
Q Consensus 18 ~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~ 87 (554)
..|||++|||+++||.+|||+|||+||++||||+|+++.|+++|++|++||++||||++|+.||++|..+
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~ 72 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAA 72 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccchh
Confidence 5799999999999999999999999999999999988889999999999999999999999999999764
No 12
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.80 E-value=5.2e-20 Score=155.88 Aligned_cols=100 Identities=19% Similarity=0.333 Sum_probs=89.6
Q ss_pred cccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770 128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI 207 (554)
Q Consensus 128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti 207 (554)
.+++||.++|+..+. .+++++|.||++||++|+.+.|.|+++++.+++. +.|++|||++++.+|++++|++ +||+
T Consensus 2 ~~~~l~~~~f~~~v~---~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~-~~~~~vd~~~~~~~~~~~~v~~-~Pt~ 76 (101)
T cd03003 2 EIVTLDRGDFDAAVN---SGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGV-IRIGAVNCGDDRMLCRSQGVNS-YPSL 76 (101)
T ss_pred CeEEcCHhhHHHHhc---CCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCc-eEEEEEeCCccHHHHHHcCCCc-cCEE
Confidence 467899999999883 4589999999999999999999999999999874 9999999999999999999997 9999
Q ss_pred eeccCCeEEEEeCCcccHHHHHHHH
Q psy16770 208 ALLTDGRTSFFKEPSFSVQKMVEFF 232 (554)
Q Consensus 208 ~~~~~g~~~~y~~g~~~~~~i~~fl 232 (554)
++|++|+....+.|.++.++|++|+
T Consensus 77 ~~~~~g~~~~~~~G~~~~~~l~~f~ 101 (101)
T cd03003 77 YVFPSGMNPEKYYGDRSKESLVKFA 101 (101)
T ss_pred EEEcCCCCcccCCCCCCHHHHHhhC
Confidence 9999998766666667889998873
No 13
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.80 E-value=8.2e-20 Score=157.38 Aligned_cols=107 Identities=42% Similarity=0.825 Sum_probs=97.2
Q ss_pred ccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCc
Q psy16770 127 FHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQ 206 (554)
Q Consensus 127 ~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pt 206 (554)
+.+..+|.++|++.+...+.+++++|.||||||++|+.+.|.|+++++.+++.++.+++|||+.++.+|++++|.+ +||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~-~Pt 82 (111)
T cd02963 4 DYKYSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHS-VPA 82 (111)
T ss_pred chhheeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCcc-CCE
Confidence 4567789999998887666789999999999999999999999999999986569999999999999999999997 999
Q ss_pred ceeccCCeEEEEeCCcccHHHHHHHHHH
Q psy16770 207 IALLTDGRTSFFKEPSFSVQKMVEFFRL 234 (554)
Q Consensus 207 i~~~~~g~~~~y~~g~~~~~~i~~fl~~ 234 (554)
+++|++|+...+..|..+.+.|++|+.+
T Consensus 83 ~~i~~~g~~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 83 IVGIINGQVTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred EEEEECCEEEEEecCCCCHHHHHHHHhc
Confidence 9999999988887787788999999975
No 14
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1e-19 Score=188.46 Aligned_cols=70 Identities=40% Similarity=0.768 Sum_probs=66.3
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770 18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-DPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD 87 (554)
Q Consensus 18 ~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~-~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~ 87 (554)
..|||+||||+++||.+|||+|||+||++||||+++ ++.|+++|++|++||+||+||.+|+.||++|..+
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~ 72 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKG 72 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccc
Confidence 479999999999999999999999999999999997 5778999999999999999999999999999764
No 15
>KOG0191|consensus
Probab=99.79 E-value=2.5e-18 Score=180.51 Aligned_cols=210 Identities=18% Similarity=0.318 Sum_probs=161.5
Q ss_pred ccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcce
Q psy16770 129 KLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIA 208 (554)
Q Consensus 129 ~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~ 208 (554)
...++..+|...+. +.+.+++|+||+|||+||+++.|+|++++..+++ .+.++.|||+.+.++|++|+|.+ |||++
T Consensus 31 ~~~~~~~~~~~~~~--~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~-~~~~~~vd~~~~~~~~~~y~i~g-fPtl~ 106 (383)
T KOG0191|consen 31 VSELTLDSFFDFLL--KDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKG-KVKIGAVDCDEHKDLCEKYGIQG-FPTLK 106 (383)
T ss_pred hhhhhccccHHHhh--ccCCceEEEEECCCCcchhhhchHHHHHHHHhcC-ceEEEEeCchhhHHHHHhcCCcc-CcEEE
Confidence 44455666766665 5778999999999999999999999999999998 59999999999999999999998 99999
Q ss_pred eccCC-eEEEEeCCcccHHHHHHHHHHhCCCCc-------cccCCcccHHHHHhhhhcCCceEEEEEe------cCCchh
Q psy16770 209 LLTDG-RTSFFKEPSFSVQKMVEFFRLKLPYKL-------IVPLSATNVDAFLDNWREDNKVHALLFQ------RSLPVR 274 (554)
Q Consensus 209 ~~~~g-~~~~y~~g~~~~~~i~~fl~~~~~~~~-------v~~~t~~~~~~fl~~~~~~~~~~v~~f~------~~~~~~ 274 (554)
+|.+| .++.|.+ .++.+.+.+|+.+.+.+.. +..++..++...... .+..+.|.+|. ....+.
T Consensus 107 ~f~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~--~~~~~lv~f~aPwc~~ck~l~~~ 183 (383)
T KOG0191|consen 107 VFRPGKKPIDYSG-PRNAESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKD--SDADWLVEFYAPWCGHCKKLAPE 183 (383)
T ss_pred EEcCCCceeeccC-cccHHHHHHHHHHhhccccccccCCceEEccccchhhhhhc--cCcceEEEEeccccHHhhhcChH
Confidence 99988 5677776 4688999999998876542 333455566665543 23444444543 223345
Q ss_pred HHHHHHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCCCChhHHHhHHhcCCCc
Q psy16770 275 LRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNPYL 350 (554)
Q Consensus 275 ~~~~~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~~~~ 350 (554)
+...+..++....+.++.++++ ....++.+++|.. +||+++|+++.. + ...+.+..+...|..|+....-.
T Consensus 184 ~~~~a~~~~~~~~v~~~~~d~~--~~~~~~~~~~v~~-~Pt~~~f~~~~~-~-~~~~~~~R~~~~i~~~v~~~~~~ 254 (383)
T KOG0191|consen 184 WEKLAKLLKSKENVELGKIDAT--VHKSLASRLEVRG-YPTLKLFPPGEE-D-IYYYSGLRDSDSIVSFVEKKERR 254 (383)
T ss_pred HHHHHHHhccCcceEEEeeccc--hHHHHhhhhcccC-CceEEEecCCCc-c-cccccccccHHHHHHHHHhhcCC
Confidence 5555554544688999999887 6788999999997 999999998666 2 23566777888999999877555
No 16
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.79 E-value=1.3e-19 Score=154.76 Aligned_cols=98 Identities=16% Similarity=0.174 Sum_probs=86.2
Q ss_pred ccccccccccccccCCCCCCcEEEEEEc--cccc---ccccchHHHHHHHHHhCCCCEEEEEEEe-----cCcHHHHHHh
Q psy16770 129 KLSTTHWNFEKNYIPKSYTTPHLILFYS--DWCF---ACLQVEPIFKKLMDELSPLGVGFFTVHV-----HNEQGLARRL 198 (554)
Q Consensus 129 ~~~Lt~~~F~~~v~~~~~~~~~lV~Fya--~wC~---~C~~l~p~~~~~a~~l~~~~v~~~~Vd~-----~~~~~l~~~~ 198 (554)
+++||..||++.| +.++.+||+||| |||+ ||++++|+|.+++.. +.+|+||| +++.+||++|
T Consensus 3 ~v~L~~~nF~~~v---~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~-----v~lakVd~~d~~~~~~~~L~~~y 74 (116)
T cd03007 3 CVDLDTVTFYKVI---PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDD-----LLVAEVGIKDYGEKLNMELGERY 74 (116)
T ss_pred eeECChhhHHHHH---hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCc-----eEEEEEecccccchhhHHHHHHh
Confidence 6889999999998 577899999999 9999 999999999887763 88999999 5689999999
Q ss_pred CCc--CCCCcceeccCCe---EEEEeCCcccHHHHHHHHHHh
Q psy16770 199 GVG--SQLPQIALLTDGR---TSFFKEPSFSVQKMVEFFRLK 235 (554)
Q Consensus 199 ~v~--~~~Pti~~~~~g~---~~~y~~g~~~~~~i~~fl~~~ 235 (554)
+|+ + ||||++|++|. +..|.|+.|+.++|++||.++
T Consensus 75 ~I~~~g-yPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 75 KLDKES-YPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CCCcCC-CCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 999 9 99999999884 467776436999999999875
No 17
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.78 E-value=5.2e-19 Score=149.79 Aligned_cols=103 Identities=27% Similarity=0.514 Sum_probs=94.1
Q ss_pred ccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcce
Q psy16770 129 KLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIA 208 (554)
Q Consensus 129 ~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~ 208 (554)
|..+|.++|++.+.. ++++++|.||++||++|+.+.|.|+++++.+.+ ++.++.|||++++.+|++++|.+ +||++
T Consensus 1 v~~lt~~~f~~~i~~--~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~-~Pt~~ 76 (103)
T PF00085_consen 1 VIVLTDENFEKFINE--SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDENKELCKKYGVKS-VPTII 76 (103)
T ss_dssp SEEESTTTHHHHHTT--TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTSHHHHHHTTCSS-SSEEE
T ss_pred CEECCHHHHHHHHHc--cCCCEEEEEeCCCCCccccccceeccccccccc-ccccchhhhhccchhhhccCCCC-CCEEE
Confidence 467899999999963 478999999999999999999999999999987 79999999999999999999997 99999
Q ss_pred eccCCeEEEEeCCcccHHHHHHHHHHh
Q psy16770 209 LLTDGRTSFFKEPSFSVQKMVEFFRLK 235 (554)
Q Consensus 209 ~~~~g~~~~y~~g~~~~~~i~~fl~~~ 235 (554)
+|++|+....+.|.++.+.|.+||+++
T Consensus 77 ~~~~g~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 77 FFKNGKEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp EEETTEEEEEEESSSSHHHHHHHHHHH
T ss_pred EEECCcEEEEEECCCCHHHHHHHHHcC
Confidence 999999876666667999999999875
No 18
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.78 E-value=5.5e-19 Score=152.77 Aligned_cols=105 Identities=18% Similarity=0.270 Sum_probs=89.9
Q ss_pred cccccccccccccccCCCCCCcEEEEEEcccccc--cc--cchHHHHHHHHHh-CCCCEEEEEEEecCcHHHHHHhCCcC
Q psy16770 128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFA--CL--QVEPIFKKLMDEL-SPLGVGFFTVHVHNEQGLARRLGVGS 202 (554)
Q Consensus 128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~--C~--~l~p~~~~~a~~l-~~~~v~~~~Vd~~~~~~l~~~~~v~~ 202 (554)
.+.+||.+||++.|. +++.++++.|+++||++ |+ .++|.+.++|.++ +..++.|++||++++++||++|||++
T Consensus 10 ~v~~lt~~nF~~~v~--~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~ 87 (120)
T cd03065 10 RVIDLNEKNYKQVLK--KYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDE 87 (120)
T ss_pred ceeeCChhhHHHHHH--hCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCcc
Confidence 588899999999996 56678888888889975 99 7788877777665 33369999999999999999999998
Q ss_pred CCCcceeccCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770 203 QLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKL 236 (554)
Q Consensus 203 ~~Pti~~~~~g~~~~y~~g~~~~~~i~~fl~~~~ 236 (554)
+||+++|++|+.+.|. |.++.+.|++|+.+.+
T Consensus 88 -iPTl~lfk~G~~v~~~-G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 88 -EDSIYVFKDDEVIEYD-GEFAADTLVEFLLDLI 119 (120)
T ss_pred -ccEEEEEECCEEEEee-CCCCHHHHHHHHHHHh
Confidence 9999999999988855 4568899999998754
No 19
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=5.8e-19 Score=183.25 Aligned_cols=70 Identities=50% Similarity=0.940 Sum_probs=67.0
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770 18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD 87 (554)
Q Consensus 18 ~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~ 87 (554)
..|||+||||++.||.+|||+|||+||++||||+++++.++++|++|++||++|+||.+|+.||++|..+
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g 73 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAG 73 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccc
Confidence 4799999999999999999999999999999999988889999999999999999999999999999764
No 20
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.77 E-value=4.6e-19 Score=150.87 Aligned_cols=100 Identities=20% Similarity=0.361 Sum_probs=87.0
Q ss_pred ccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcce
Q psy16770 129 KLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIA 208 (554)
Q Consensus 129 ~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~ 208 (554)
+.+||.++|++.|. +.+++++|.|||+||++|+++.|.|+++++.+.+ .+.+++|||++++++|++++|++ +||++
T Consensus 3 v~~l~~~~f~~~i~--~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~i~~-~Pt~~ 78 (104)
T cd03004 3 VITLTPEDFPELVL--NRKEPWLVDFYAPWCGPCQALLPELRKAARALKG-KVKVGSVDCQKYESLCQQANIRA-YPTIR 78 (104)
T ss_pred ceEcCHHHHHHHHh--cCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEECCchHHHHHHcCCCc-ccEEE
Confidence 66789999999886 3456999999999999999999999999999976 49999999999999999999997 99999
Q ss_pred eccCC-eEEEEeCCccc-HHHHHHHH
Q psy16770 209 LLTDG-RTSFFKEPSFS-VQKMVEFF 232 (554)
Q Consensus 209 ~~~~g-~~~~y~~g~~~-~~~i~~fl 232 (554)
+|.+| +....+.|.++ .++|.+|+
T Consensus 79 ~~~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 79 LYPGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred EEcCCCCCceEccCCCCCHHHHHhhC
Confidence 99887 65544445555 89998875
No 21
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=6.2e-19 Score=182.86 Aligned_cols=70 Identities=47% Similarity=0.869 Sum_probs=67.0
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770 18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD 87 (554)
Q Consensus 18 ~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~ 87 (554)
..|||++|||+++||.+|||+|||+||++||||+|+++.|+++|++|++||++|+||.+|+.||++|..+
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~ 72 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTD 72 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcc
Confidence 4799999999999999999999999999999999988889999999999999999999999999999765
No 22
>KOG0910|consensus
Probab=99.77 E-value=5.1e-19 Score=154.76 Aligned_cols=106 Identities=17% Similarity=0.352 Sum_probs=97.9
Q ss_pred cccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770 128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI 207 (554)
Q Consensus 128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti 207 (554)
....++..+|++.|. +++.|++|+|||+||++|+.+.|..++++.++.+. +++++||.+++.+|+.+|+|.. +||+
T Consensus 44 ~~~~~s~~~~~~~Vi--~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~-~k~~kvdtD~~~ela~~Y~I~a-vPtv 119 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVI--NSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK-FKLYKVDTDEHPELAEDYEISA-VPTV 119 (150)
T ss_pred cccccCHHHHHHHHH--ccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe-EEEEEEccccccchHhhcceee-eeEE
Confidence 345678899999997 78899999999999999999999999999999884 9999999999999999999997 9999
Q ss_pred eeccCCeEEEEeCCcccHHHHHHHHHHhCC
Q psy16770 208 ALLTDGRTSFFKEPSFSVQKMVEFFRLKLP 237 (554)
Q Consensus 208 ~~~~~g~~~~y~~g~~~~~~i~~fl~~~~~ 237 (554)
++|+||+..+...|..+.+.|.+++++.++
T Consensus 120 lvfknGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 120 LVFKNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred EEEECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 999999999888888898999999998764
No 23
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=7.1e-19 Score=183.16 Aligned_cols=70 Identities=41% Similarity=0.803 Sum_probs=67.3
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770 18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD 87 (554)
Q Consensus 18 ~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~ 87 (554)
..|||+||||+++||.+|||+|||+||++||||+++++.|+++|++|++||++|+||.+|+.||++|..+
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~ 72 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAG 72 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCcc
Confidence 4799999999999999999999999999999999988889999999999999999999999999999865
No 24
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=6.4e-19 Score=182.81 Aligned_cols=70 Identities=41% Similarity=0.802 Sum_probs=66.3
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770 18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-DPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD 87 (554)
Q Consensus 18 ~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~-~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~ 87 (554)
..|||++|||+++||.+|||+|||+||++||||+++ ++.|+++|++|++||+||+||.+|+.||++|..+
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g 73 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAG 73 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchh
Confidence 479999999999999999999999999999999997 4678999999999999999999999999999865
No 25
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.76 E-value=7.3e-19 Score=150.78 Aligned_cols=100 Identities=24% Similarity=0.413 Sum_probs=86.8
Q ss_pred cccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCC-----CEEEEEEEecCcHHHHHHhCCcC
Q psy16770 128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPL-----GVGFFTVHVHNEQGLARRLGVGS 202 (554)
Q Consensus 128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~-----~v~~~~Vd~~~~~~l~~~~~v~~ 202 (554)
.+++||.++|++.+ +.+++++|.||||||++|+++.|.|+++++.+++. .+.+++|||+.+..+|++++|++
T Consensus 2 ~v~~l~~~~f~~~i---~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~ 78 (108)
T cd02996 2 EIVSLTSGNIDDIL---QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINK 78 (108)
T ss_pred ceEEcCHhhHHHHH---hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCc
Confidence 46789999999987 45679999999999999999999999999887521 38999999999999999999997
Q ss_pred CCCcceeccCCe-E-EEEeCCcccHHHHHHHH
Q psy16770 203 QLPQIALLTDGR-T-SFFKEPSFSVQKMVEFF 232 (554)
Q Consensus 203 ~~Pti~~~~~g~-~-~~y~~g~~~~~~i~~fl 232 (554)
+||+++|++|+ . ..|. |.++.++|++|+
T Consensus 79 -~Ptl~~~~~g~~~~~~~~-g~~~~~~l~~fi 108 (108)
T cd02996 79 -YPTLKLFRNGMMMKREYR-GQRSVEALAEFV 108 (108)
T ss_pred -CCEEEEEeCCcCcceecC-CCCCHHHHHhhC
Confidence 99999999998 3 4444 567889999885
No 26
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=1.5e-18 Score=180.14 Aligned_cols=70 Identities=49% Similarity=0.879 Sum_probs=66.0
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770 18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-DPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD 87 (554)
Q Consensus 18 ~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~-~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~ 87 (554)
..|||++|||+++||.++||+|||+||++||||+++ ++.|+++|++|++||++|+||.+|+.||.+|..+
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g 73 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAG 73 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccc
Confidence 479999999999999999999999999999999997 4678899999999999999999999999999765
No 27
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.75 E-value=2.8e-18 Score=145.25 Aligned_cols=100 Identities=27% Similarity=0.454 Sum_probs=87.6
Q ss_pred cccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770 128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI 207 (554)
Q Consensus 128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti 207 (554)
.+++||.++|++.+. + .++|.|||+||++|+.+.|.|+++++.+++.++.+++|||++++.+|++++|.+ +||+
T Consensus 2 ~v~~l~~~~f~~~~~----~-~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~-~Pt~ 75 (101)
T cd02994 2 NVVELTDSNWTLVLE----G-EWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTA-LPTI 75 (101)
T ss_pred ceEEcChhhHHHHhC----C-CEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcc-cCEE
Confidence 477899999998762 2 389999999999999999999999998876579999999999999999999997 9999
Q ss_pred eeccCCeEEEEeCCcccHHHHHHHHHH
Q psy16770 208 ALLTDGRTSFFKEPSFSVQKMVEFFRL 234 (554)
Q Consensus 208 ~~~~~g~~~~y~~g~~~~~~i~~fl~~ 234 (554)
+++++|+...+.| .++.++|.+|+.+
T Consensus 76 ~~~~~g~~~~~~G-~~~~~~l~~~i~~ 101 (101)
T cd02994 76 YHAKDGVFRRYQG-PRDKEDLISFIEE 101 (101)
T ss_pred EEeCCCCEEEecC-CCCHHHHHHHHhC
Confidence 9999998755554 5688999999863
No 28
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.75 E-value=1.6e-18 Score=181.32 Aligned_cols=68 Identities=40% Similarity=0.750 Sum_probs=63.7
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770 17 VSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD 87 (554)
Q Consensus 17 ~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~ 87 (554)
...|||+||||+++||.+|||+|||+||++||||++++ .++|++|++||++|+||.+|+.||++|..+
T Consensus 26 ~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~---~e~F~~i~~AYevLsD~~kR~~YD~~G~~~ 93 (421)
T PTZ00037 26 DNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD---PEKFKEISRAYEVLSDPEKRKIYDEYGEEG 93 (421)
T ss_pred cchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch---HHHHHHHHHHHHHhccHHHHHHHhhhcchh
Confidence 46799999999999999999999999999999999864 589999999999999999999999999764
No 29
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=2.7e-18 Score=178.27 Aligned_cols=70 Identities=49% Similarity=0.887 Sum_probs=65.8
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--hhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770 18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNND--PTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD 87 (554)
Q Consensus 18 ~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~--~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~ 87 (554)
..|||+||||+++||.+|||+|||+||++||||+++. +.|+++|++|++||++|+||.+|+.||++|..+
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~ 74 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVG 74 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccc
Confidence 5799999999999999999999999999999999973 568899999999999999999999999999765
No 30
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=1.7e-18 Score=180.39 Aligned_cols=70 Identities=51% Similarity=0.884 Sum_probs=67.1
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770 18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD 87 (554)
Q Consensus 18 ~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~ 87 (554)
..|||++|||+++|+.++||+|||+||++||||+|+++.++++|++|++||++|+||.+|+.||++|..+
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~ 71 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAA 71 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccc
Confidence 4799999999999999999999999999999999988889999999999999999999999999999764
No 31
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=2.4e-18 Score=178.85 Aligned_cols=68 Identities=49% Similarity=0.720 Sum_probs=65.8
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCCC
Q psy16770 19 LDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTT 86 (554)
Q Consensus 19 ~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~ 86 (554)
.|||+||||+++||.+|||+|||+||++||||+++++.|+++|++|++||++|+||.+|+.||++|..
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~ 70 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDP 70 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCc
Confidence 69999999999999999999999999999999999888999999999999999999999999999975
No 32
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.4e-18 Score=167.77 Aligned_cols=108 Identities=27% Similarity=0.421 Sum_probs=103.9
Q ss_pred ccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcce
Q psy16770 129 KLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIA 208 (554)
Q Consensus 129 ~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~ 208 (554)
+.++|..||+..|...+...|+||.||+|||++|+.+.|..++++.+++| ++.+++|||+.++.++.+|||++ +||++
T Consensus 25 I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G-~f~LakvN~D~~p~vAaqfgiqs-IPtV~ 102 (304)
T COG3118 25 IKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG-KFKLAKVNCDAEPMVAAQFGVQS-IPTVY 102 (304)
T ss_pred ceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCC-ceEEEEecCCcchhHHHHhCcCc-CCeEE
Confidence 88999999999999988888999999999999999999999999999998 59999999999999999999997 99999
Q ss_pred eccCCeEEEEeCCcccHHHHHHHHHHhCCC
Q psy16770 209 LLTDGRTSFFKEPSFSVQKMVEFFRLKLPY 238 (554)
Q Consensus 209 ~~~~g~~~~y~~g~~~~~~i~~fl~~~~~~ 238 (554)
+|++|+++.-+.|....+.|.+|+.+.++.
T Consensus 103 af~dGqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 103 AFKDGQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred EeeCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence 999999999888888888999999999987
No 33
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=2.9e-18 Score=177.87 Aligned_cols=71 Identities=46% Similarity=0.803 Sum_probs=66.7
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770 17 VSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-DPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD 87 (554)
Q Consensus 17 ~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~-~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~ 87 (554)
...|||+||||+++||.+|||+|||+||++||||+++ ++.++++|++|++||++|+||.+|+.||++|..+
T Consensus 2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g 73 (366)
T PRK14294 2 VKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEG 73 (366)
T ss_pred CCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhcccc
Confidence 3579999999999999999999999999999999997 4678899999999999999999999999999765
No 34
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=3.4e-18 Score=177.80 Aligned_cols=70 Identities=47% Similarity=0.826 Sum_probs=67.2
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770 18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD 87 (554)
Q Consensus 18 ~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~ 87 (554)
..|||+||||+++|+.+|||+|||+||++||||+++++.|+++|++|++||++|+||.+|+.||++|..+
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~ 72 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAG 72 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCccc
Confidence 4799999999999999999999999999999999988889999999999999999999999999999765
No 35
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=3.5e-18 Score=178.29 Aligned_cols=70 Identities=50% Similarity=0.836 Sum_probs=66.1
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770 18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-DPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD 87 (554)
Q Consensus 18 ~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~-~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~ 87 (554)
..|||+||||+++||.+|||+|||+||++||||+++ ++.|+++|++|++||++|+||.+|+.||.+|..+
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~ 74 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAA 74 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhcccc
Confidence 479999999999999999999999999999999997 4678899999999999999999999999999764
No 36
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=3.3e-18 Score=177.03 Aligned_cols=69 Identities=45% Similarity=0.793 Sum_probs=65.5
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770 19 LDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-DPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD 87 (554)
Q Consensus 19 ~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~-~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~ 87 (554)
.|||++|||+++||.+|||+|||+||++||||+++ ++.|.++|++|++||++|+||.+|+.||++|..+
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~ 72 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTA 72 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcch
Confidence 69999999999999999999999999999999997 4678899999999999999999999999999864
No 37
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.74 E-value=3.6e-18 Score=146.67 Aligned_cols=104 Identities=16% Similarity=0.350 Sum_probs=90.4
Q ss_pred cccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC-cHHHHHH-hCCcCCCC
Q psy16770 128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN-EQGLARR-LGVGSQLP 205 (554)
Q Consensus 128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~-~~~l~~~-~~v~~~~P 205 (554)
.++++|.++|+..+...+.+++++|.||++||++|+++.|.|+++++.+++.++.++.|||+. +..+|.+ ++|++ +|
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~-~P 80 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKS-FP 80 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCc-CC
Confidence 478899999999986656788999999999999999999999999999987679999999998 6888874 99997 99
Q ss_pred cceeccCCe--EEEEeCCcccHHHHHHHH
Q psy16770 206 QIALLTDGR--TSFFKEPSFSVQKMVEFF 232 (554)
Q Consensus 206 ti~~~~~g~--~~~y~~g~~~~~~i~~fl 232 (554)
|+++|.+|. ...|.|+.++.++|++|+
T Consensus 81 ti~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 81 TILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred EEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 999997653 567776557899999885
No 38
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.74 E-value=5e-18 Score=162.75 Aligned_cols=108 Identities=22% Similarity=0.415 Sum_probs=97.8
Q ss_pred ccccccccccccccccCCC--CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCC
Q psy16770 127 FHKLSTTHWNFEKNYIPKS--YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQL 204 (554)
Q Consensus 127 ~~~~~Lt~~~F~~~v~~~~--~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~ 204 (554)
..+++||.++|++.+.... .+++|+|+||||||++|+++.|.|+++++++++ .+.+++|||++++.+|++|+|++ +
T Consensus 30 ~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~-~v~~~~VD~~~~~~l~~~~~I~~-~ 107 (224)
T PTZ00443 30 NALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKG-QVNVADLDATRALNLAKRFAIKG-Y 107 (224)
T ss_pred CCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCC-CeEEEEecCcccHHHHHHcCCCc-C
Confidence 4689999999999875321 357999999999999999999999999999987 49999999999999999999997 9
Q ss_pred CcceeccCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770 205 PQIALLTDGRTSFFKEPSFSVQKMVEFFRLKL 236 (554)
Q Consensus 205 Pti~~~~~g~~~~y~~g~~~~~~i~~fl~~~~ 236 (554)
||+++|.+|+.+.+.+|.++.++|.+|+.+..
T Consensus 108 PTl~~f~~G~~v~~~~G~~s~e~L~~fi~~~~ 139 (224)
T PTZ00443 108 PTLLLFDKGKMYQYEGGDRSTEKLAAFALGDF 139 (224)
T ss_pred CEEEEEECCEEEEeeCCCCCHHHHHHHHHHHH
Confidence 99999999999999888889999999998775
No 39
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.73 E-value=6.7e-18 Score=174.89 Aligned_cols=68 Identities=51% Similarity=0.905 Sum_probs=65.4
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD 87 (554)
Q Consensus 20 d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~ 87 (554)
|||++|||+++|+.+|||+|||+||++||||+++++.+.++|++|++||++|+|+.+|+.||.+|..+
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~ 68 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAG 68 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhccccc
Confidence 79999999999999999999999999999999987788999999999999999999999999999865
No 40
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=6.5e-18 Score=176.13 Aligned_cols=70 Identities=49% Similarity=0.872 Sum_probs=66.1
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770 18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-DPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD 87 (554)
Q Consensus 18 ~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~-~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~ 87 (554)
..|||++|||+++|+.+|||+|||+||++||||+++ ++.|+++|++|++||++|+||.+|+.||++|..+
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~ 73 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTAD 73 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCccc
Confidence 479999999999999999999999999999999997 4678999999999999999999999999999765
No 41
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=4.1e-18 Score=171.23 Aligned_cols=70 Identities=50% Similarity=0.867 Sum_probs=67.1
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770 18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD 87 (554)
Q Consensus 18 ~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~ 87 (554)
..|||+||||+++||.+|||+|||+||++||||+++++.++++|++|++||++|+||.+|+.||++|..+
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~ 72 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTA 72 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCcc
Confidence 4799999999999999999999999999999999988889999999999999999999999999999864
No 42
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=1.6e-17 Score=172.86 Aligned_cols=70 Identities=47% Similarity=0.852 Sum_probs=66.0
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770 18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-DPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD 87 (554)
Q Consensus 18 ~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~-~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~ 87 (554)
..|||+||||+++||.+|||+|||+||++||||+++ ++.|+++|++|++||++|+||.+|+.||++|..+
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~ 73 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAA 73 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccc
Confidence 479999999999999999999999999999999997 4678899999999999999999999999999765
No 43
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.72 E-value=1.2e-17 Score=141.28 Aligned_cols=100 Identities=21% Similarity=0.420 Sum_probs=87.0
Q ss_pred cccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCC--CCEEEEEEEecCcHHHHHHhCCcCCCC
Q psy16770 128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSP--LGVGFFTVHVHNEQGLARRLGVGSQLP 205 (554)
Q Consensus 128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~--~~v~~~~Vd~~~~~~l~~~~~v~~~~P 205 (554)
++++||.++|++.+. +++++|.|||+||++|+.+.|.|+++++.+++ ..+.+++|||+++..+|++++|.+ +|
T Consensus 1 ~~~~l~~~~f~~~~~----~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~-~P 75 (102)
T cd03005 1 GVLELTEDNFDHHIA----EGNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRG-YP 75 (102)
T ss_pred CeeECCHHHHHHHhh----cCCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCc-CC
Confidence 467899999999984 23699999999999999999999999999976 359999999999999999999997 99
Q ss_pred cceeccCCeEEEEeCCcccHHHHHHHH
Q psy16770 206 QIALLTDGRTSFFKEPSFSVQKMVEFF 232 (554)
Q Consensus 206 ti~~~~~g~~~~y~~g~~~~~~i~~fl 232 (554)
|+++|++|+....+.|.++.++|.+|+
T Consensus 76 t~~~~~~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 76 TLLLFKDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred EEEEEeCCCeeeEeeCCCCHHHHHhhC
Confidence 999999998765454566888888875
No 44
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.71 E-value=1.8e-17 Score=142.13 Aligned_cols=99 Identities=23% Similarity=0.418 Sum_probs=87.2
Q ss_pred ccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC--cHHHHHHhCCcCCCCc
Q psy16770 129 KLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN--EQGLARRLGVGSQLPQ 206 (554)
Q Consensus 129 ~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~--~~~l~~~~~v~~~~Pt 206 (554)
+++|+.++|++.|. +.+++++|.|||+||++|+++.|.|+++++.+.+ .+.++.|||+. +..+|++++|++ +||
T Consensus 2 v~~l~~~~~~~~i~--~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~v~~~~~~~~~~~~~~~i~~-~Pt 77 (109)
T cd03002 2 VYELTPKNFDKVVH--NTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG-LVQVAAVDCDEDKNKPLCGKYGVQG-FPT 77 (109)
T ss_pred eEEcchhhHHHHHh--cCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC-CceEEEEecCccccHHHHHHcCCCc-CCE
Confidence 57899999999986 4567899999999999999999999999999986 48999999999 899999999997 999
Q ss_pred ceeccCCe------EEEEeCCcccHHHHHHHH
Q psy16770 207 IALLTDGR------TSFFKEPSFSVQKMVEFF 232 (554)
Q Consensus 207 i~~~~~g~------~~~y~~g~~~~~~i~~fl 232 (554)
+++|.+|+ ...|. |.++.++|++|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~-G~~~~~~l~~fi 108 (109)
T cd03002 78 LKVFRPPKKASKHAVEDYN-GERSAKAIVDFV 108 (109)
T ss_pred EEEEeCCCccccccccccc-CccCHHHHHHHh
Confidence 99998775 34455 556889999997
No 45
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=8.9e-18 Score=175.30 Aligned_cols=69 Identities=45% Similarity=0.717 Sum_probs=65.4
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHcCChHHHHhhhccCCC
Q psy16770 18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-DPTAQEKFLQLTEAYNILSDAERRKQYDLFGTT 86 (554)
Q Consensus 18 ~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~-~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~ 86 (554)
..|||+||||+++|+.+|||+|||+||++||||+++ ++.|+++|++|++||++||||++|+.||++|..
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~ 77 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRL 77 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhh
Confidence 579999999999999999999999999999999997 567899999999999999999999999999863
No 46
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=1.4e-17 Score=173.43 Aligned_cols=70 Identities=46% Similarity=0.823 Sum_probs=67.3
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770 18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD 87 (554)
Q Consensus 18 ~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~ 87 (554)
..|||++|||+++||.+|||+|||+||++||||+|+++.|+++|++|++||++|+||.+|+.||++|..+
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g 73 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAG 73 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhcccc
Confidence 5799999999999999999999999999999999988889999999999999999999999999999764
No 47
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.70 E-value=1.5e-17 Score=128.25 Aligned_cols=62 Identities=56% Similarity=0.989 Sum_probs=59.2
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChh--HHHHHHHHHHHHHHcCChHHHHhhh
Q psy16770 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPT--AQEKFLQLTEAYNILSDAERRKQYD 81 (554)
Q Consensus 20 d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~--~~~~~~~i~~Ay~~L~~~~~r~~yd 81 (554)
|||+||||+++++.++||++|+++++++|||+++... +.+.|..|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6899999999999999999999999999999987655 8899999999999999999999998
No 48
>PRK09381 trxA thioredoxin; Provisional
Probab=99.70 E-value=6.4e-17 Score=138.88 Aligned_cols=107 Identities=21% Similarity=0.449 Sum_probs=95.7
Q ss_pred cccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCC
Q psy16770 126 LFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLP 205 (554)
Q Consensus 126 ~~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~P 205 (554)
++.+.+++.++|.+.+. +.+++++|.||++||++|+.+.|.++++++.+.+ ++.++.|||+.++.++++++|.+ +|
T Consensus 2 ~~~v~~~~~~~~~~~v~--~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~-~P 77 (109)
T PRK09381 2 SDKIIHLTDDSFDTDVL--KADGAILVDFWAEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQNPGTAPKYGIRG-IP 77 (109)
T ss_pred CCcceeeChhhHHHHHh--cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC-CcEEEEEECCCChhHHHhCCCCc-CC
Confidence 45688899999998876 4577999999999999999999999999999987 59999999999999999999997 99
Q ss_pred cceeccCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770 206 QIALLTDGRTSFFKEPSFSVQKMVEFFRLKL 236 (554)
Q Consensus 206 ti~~~~~g~~~~y~~g~~~~~~i~~fl~~~~ 236 (554)
|+++|++|+......|..+.+.|..++.+.+
T Consensus 78 t~~~~~~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 78 TLLLFKNGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred EEEEEeCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 9999999998776666678899999998764
No 49
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=2.7e-17 Score=170.81 Aligned_cols=69 Identities=38% Similarity=0.743 Sum_probs=66.1
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770 19 LDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD 87 (554)
Q Consensus 19 ~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~ 87 (554)
.|||+||||+++||.+|||+|||+||++||||+++++.++++|++|++||++|+|+.+|+.||++|..+
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~ 71 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDA 71 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhccccc
Confidence 699999999999999999999999999999999987788999999999999999999999999999764
No 50
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.69 E-value=8.2e-16 Score=148.47 Aligned_cols=196 Identities=14% Similarity=0.185 Sum_probs=134.2
Q ss_pred cccccccccCCCCCCcEEEEEEc---ccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceec
Q psy16770 134 HWNFEKNYIPKSYTTPHLILFYS---DWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALL 210 (554)
Q Consensus 134 ~~~F~~~v~~~~~~~~~lV~Fya---~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~ 210 (554)
.+.|.+.+ .+...++.|++ +||++|+.+.|.++++++.+....+.++.+|.+++++++++|+|.+ +||+++|
T Consensus 10 ~~~~~~~~----~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~-~Pt~~~f 84 (215)
T TIGR02187 10 KELFLKEL----KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVER-VPTTIIL 84 (215)
T ss_pred HHHHHHhc----CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCc-cCEEEEE
Confidence 44544544 34456777988 9999999999999999999864345677777779999999999997 9999999
Q ss_pred cCCeEEE-EeCCcccHHHHHHHHHHhCCCC-ccccCCcccHHHHHhhhhcCCceEEEEEecCCchh---HHHHHHhh-cc
Q psy16770 211 TDGRTSF-FKEPSFSVQKMVEFFRLKLPYK-LIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVR---LRYLINAF-KH 284 (554)
Q Consensus 211 ~~g~~~~-y~~g~~~~~~i~~fl~~~~~~~-~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~---~~~~~~a~-~~ 284 (554)
++|+... .+.|..+.+.+.+|+...+.-. ....++.+..+.+-. .++.+.++.|....-+. .......+ ..
T Consensus 85 ~~g~~~~~~~~G~~~~~~l~~~i~~~~~~~~~~~~L~~~~~~~l~~---~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~ 161 (215)
T TIGR02187 85 EEGKDGGIRYTGIPAGYEFAALIEDIVRVSQGEPGLSEKTVELLQS---LDEPVRIEVFVTPTCPYCPYAVLMAHKFALA 161 (215)
T ss_pred eCCeeeEEEEeecCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHh---cCCCcEEEEEECCCCCCcHHHHHHHHHHHHh
Confidence 9998753 4434557788888888764211 123444444444332 23445555564432222 22222222 22
Q ss_pred CCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770 285 RTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDN 346 (554)
Q Consensus 285 ~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~ 346 (554)
.+.+.+..++.+ .+++++++|+|.+ .||+++++++.. ..|..+.+.+.+|+..
T Consensus 162 ~~~i~~~~vD~~--~~~~~~~~~~V~~-vPtl~i~~~~~~------~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 162 NDKILGEMIEAN--ENPDLAEKYGVMS-VPKIVINKGVEE------FVGAYPEEQFLEYILS 214 (215)
T ss_pred cCceEEEEEeCC--CCHHHHHHhCCcc-CCEEEEecCCEE------EECCCCHHHHHHHHHh
Confidence 467888888876 7899999999997 999999875321 4566677788888764
No 51
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.69 E-value=8e-17 Score=134.90 Aligned_cols=94 Identities=17% Similarity=0.308 Sum_probs=83.0
Q ss_pred cccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeE
Q psy16770 136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRT 215 (554)
Q Consensus 136 ~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~ 215 (554)
+|++.|.. +.+++++|.||++||++|+++.|.++++++.+.+ .+.+++|||++++.+|++++|.+ +||+++|.+|+.
T Consensus 2 ~f~~~i~~-~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~l~~~~~i~~-~Pt~~~~~~g~~ 78 (96)
T cd02956 2 NFQQVLQE-STQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG-QFVLAKVNCDAQPQIAQQFGVQA-LPTVYLFAAGQP 78 (96)
T ss_pred ChHHHHHh-cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC-cEEEEEEeccCCHHHHHHcCCCC-CCEEEEEeCCEE
Confidence 56777753 3467999999999999999999999999999976 49999999999999999999997 999999999988
Q ss_pred EEEeCCcccHHHHHHHH
Q psy16770 216 SFFKEPSFSVQKMVEFF 232 (554)
Q Consensus 216 ~~y~~g~~~~~~i~~fl 232 (554)
.....|..+.+.|..|+
T Consensus 79 ~~~~~g~~~~~~l~~~l 95 (96)
T cd02956 79 VDGFQGAQPEEQLRQML 95 (96)
T ss_pred eeeecCCCCHHHHHHHh
Confidence 76666667889998886
No 52
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.68 E-value=1e-16 Score=135.91 Aligned_cols=99 Identities=25% Similarity=0.412 Sum_probs=87.3
Q ss_pred ccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcce
Q psy16770 129 KLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIA 208 (554)
Q Consensus 129 ~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~ 208 (554)
+.++|.++|++.+. +.+++++|.||++||++|+++.|.|.++++.+.+ .+.++.+||+++..+|++++|++ +||++
T Consensus 2 v~~l~~~~~~~~i~--~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~~~~~~~~~~~i~~-~P~~~ 77 (103)
T cd03001 2 VVELTDSNFDKKVL--NSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG-IVKVGAVDADVHQSLAQQYGVRG-FPTIK 77 (103)
T ss_pred eEEcCHHhHHHHHh--cCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECcchHHHHHHCCCCc-cCEEE
Confidence 56789999999886 3456799999999999999999999999999876 49999999999999999999997 99999
Q ss_pred eccCC--eEEEEeCCcccHHHHHHHH
Q psy16770 209 LLTDG--RTSFFKEPSFSVQKMVEFF 232 (554)
Q Consensus 209 ~~~~g--~~~~y~~g~~~~~~i~~fl 232 (554)
+|.+| ....|.|+ ++.++|++|+
T Consensus 78 ~~~~~~~~~~~~~g~-~~~~~l~~~~ 102 (103)
T cd03001 78 VFGAGKNSPQDYQGG-RTAKAIVSAA 102 (103)
T ss_pred EECCCCcceeecCCC-CCHHHHHHHh
Confidence 99888 44666666 5889999997
No 53
>PHA02278 thioredoxin-like protein
Probab=99.67 E-value=1.1e-16 Score=135.32 Aligned_cols=94 Identities=12% Similarity=0.178 Sum_probs=81.1
Q ss_pred ccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCc----HHHHHHhCCcCCCCcce
Q psy16770 133 THWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE----QGLARRLGVGSQLPQIA 208 (554)
Q Consensus 133 t~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~----~~l~~~~~v~~~~Pti~ 208 (554)
+.++|.+.+ +++++++|.||||||++|+.+.|.++++++.+.. .+.+.+||++.+ +.++++++|.+ +||++
T Consensus 3 ~~~~~~~~i---~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~-~~~~~~vdvd~~~~d~~~l~~~~~I~~-iPT~i 77 (103)
T PHA02278 3 SLVDLNTAI---RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDI-KKPILTLNLDAEDVDREKAVKLFDIMS-TPVLI 77 (103)
T ss_pred CHHHHHHHH---hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC-CceEEEEECCccccccHHHHHHCCCcc-ccEEE
Confidence 356788877 4788999999999999999999999999988654 378999999986 68999999997 99999
Q ss_pred eccCCeEEEEeCCcccHHHHHHH
Q psy16770 209 LLTDGRTSFFKEPSFSVQKMVEF 231 (554)
Q Consensus 209 ~~~~g~~~~y~~g~~~~~~i~~f 231 (554)
+|++|+.+....|..+.+.|.++
T Consensus 78 ~fk~G~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 78 GYKDGQLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred EEECCEEEEEEeCCCCHHHHHhh
Confidence 99999998887776677777664
No 54
>KOG0624|consensus
Probab=99.67 E-value=1e-16 Score=156.10 Aligned_cols=68 Identities=44% Similarity=0.740 Sum_probs=63.7
Q ss_pred cCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh----hHHHHHHHHHHHHHHcCChHHHHhhhc
Q psy16770 15 CAVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDP----TAQEKFLQLTEAYNILSDAERRKQYDL 82 (554)
Q Consensus 15 ~~~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~----~~~~~~~~i~~Ay~~L~~~~~r~~yd~ 82 (554)
.+..+|||+||||.++|+..||-||||+||.+||||-..++ .|+.+|+-|..|-++|+||++|+.||.
T Consensus 390 qs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn 461 (504)
T KOG0624|consen 390 QSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN 461 (504)
T ss_pred HhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccC
Confidence 46789999999999999999999999999999999998763 488999999999999999999999998
No 55
>KOG0716|consensus
Probab=99.67 E-value=4.8e-17 Score=154.09 Aligned_cols=70 Identities=47% Similarity=0.904 Sum_probs=66.4
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770 18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNND-PTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD 87 (554)
Q Consensus 18 ~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~-~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~ 87 (554)
..|.|.|||++++|+.++||||||+|+++||||++++ |++.++|++||+||+||+||.+|..||.+|..+
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~ 100 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELG 100 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHH
Confidence 4678999999999999999999999999999999986 889999999999999999999999999998764
No 56
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.66 E-value=2.3e-16 Score=133.75 Aligned_cols=97 Identities=18% Similarity=0.261 Sum_probs=85.7
Q ss_pred cccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceecc
Q psy16770 132 TTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLT 211 (554)
Q Consensus 132 Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~ 211 (554)
-|.++|+..+ +++++++|.|||+||++|+.+.|.++++++.+++..+.|+.||++ +.+++++|+|++ +||+++|+
T Consensus 5 ~~~~~~~~~i---~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~-~Pt~~~~~ 79 (102)
T cd02948 5 NNQEEWEELL---SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKC-EPTFLFYK 79 (102)
T ss_pred cCHHHHHHHH---ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCc-CcEEEEEE
Confidence 3677888877 467899999999999999999999999999997545899999999 889999999997 99999999
Q ss_pred CCeEEEEeCCcccHHHHHHHHHH
Q psy16770 212 DGRTSFFKEPSFSVQKMVEFFRL 234 (554)
Q Consensus 212 ~g~~~~y~~g~~~~~~i~~fl~~ 234 (554)
+|+.+....|. +.+.|.+++.+
T Consensus 80 ~g~~~~~~~G~-~~~~~~~~i~~ 101 (102)
T cd02948 80 NGELVAVIRGA-NAPLLNKTITE 101 (102)
T ss_pred CCEEEEEEecC-ChHHHHHHHhh
Confidence 99998888775 77888888764
No 57
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.66 E-value=1.6e-16 Score=133.97 Aligned_cols=92 Identities=17% Similarity=0.334 Sum_probs=77.8
Q ss_pred cccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEec-CcHHHHHHhCCcCCCCcceeccCCe
Q psy16770 136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVH-NEQGLARRLGVGSQLPQIALLTDGR 214 (554)
Q Consensus 136 ~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~-~~~~l~~~~~v~~~~Pti~~~~~g~ 214 (554)
++.+.+.. ..+++++|.|||+||++|+.+.|.|+++++.+.+ +.+++||++ .++.++++|+|.+ +||+++|++|.
T Consensus 8 ~~~~~~~~-~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~--~~~~~vd~~~~~~~l~~~~~V~~-~PT~~lf~~g~ 83 (100)
T cd02999 8 IALDLMAF-NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ--IRHLAIEESSIKPSLLSRYGVVG-FPTILLFNSTP 83 (100)
T ss_pred HHHHHHHh-cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc--CceEEEECCCCCHHHHHhcCCee-cCEEEEEcCCc
Confidence 34444432 4688999999999999999999999999999864 789999999 8999999999997 99999999995
Q ss_pred EEEEeCCcccHHHHHHHH
Q psy16770 215 TSFFKEPSFSVQKMVEFF 232 (554)
Q Consensus 215 ~~~y~~g~~~~~~i~~fl 232 (554)
...+. |.++.++|.+|+
T Consensus 84 ~~~~~-G~~~~~~l~~f~ 100 (100)
T cd02999 84 RVRYN-GTRTLDSLAAFY 100 (100)
T ss_pred eeEec-CCCCHHHHHhhC
Confidence 55555 557889999885
No 58
>KOG0721|consensus
Probab=99.66 E-value=2.6e-16 Score=144.19 Aligned_cols=85 Identities=34% Similarity=0.647 Sum_probs=72.9
Q ss_pred HHHHHHHHHhhcc----CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHHHHHHcCChHHH
Q psy16770 3 WYTFLLNVLFINC----AVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNND-PTAQEKFLQLTEAYNILSDAERR 77 (554)
Q Consensus 3 ~~~~~~~~~~~~~----~~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~-~~~~~~~~~i~~Ay~~L~~~~~r 77 (554)
|+++..++..+.. ....||||||||+|++|.+|||+|||+|++++||||+++ .+.++.|..|++||+.|+|+..|
T Consensus 79 W~v~~fL~y~i~~~~~~~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sr 158 (230)
T KOG0721|consen 79 WAVIAFLIYKIMNSRRERQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSR 158 (230)
T ss_pred HHHHHHHHHHHhhhhHHhhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhH
Confidence 5555555555543 456899999999999999999999999999999999987 45677889999999999999999
Q ss_pred HhhhccCCCC
Q psy16770 78 KQYDLFGTTD 87 (554)
Q Consensus 78 ~~yd~~~~~~ 87 (554)
..|..+|..+
T Consensus 159 eN~ekYG~PD 168 (230)
T KOG0721|consen 159 ENWEKYGNPD 168 (230)
T ss_pred HHHHHhCCCC
Confidence 9999999743
No 59
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=1.1e-16 Score=166.94 Aligned_cols=70 Identities=47% Similarity=0.882 Sum_probs=65.4
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHcCChHHHHhhhc----cCCCC
Q psy16770 18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-DPTAQEKFLQLTEAYNILSDAERRKQYDL----FGTTD 87 (554)
Q Consensus 18 ~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~-~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~----~~~~~ 87 (554)
..|||+||||+++||.+|||+|||+||++||||+++ ++.|+++|++|++||++|+||.+|+.||+ +|..+
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g 82 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGG 82 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccc
Confidence 479999999999999999999999999999999997 45789999999999999999999999998 88654
No 60
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.65 E-value=1.2e-16 Score=167.05 Aligned_cols=69 Identities=48% Similarity=0.895 Sum_probs=65.2
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770 19 LDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-DPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD 87 (554)
Q Consensus 19 ~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~-~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~ 87 (554)
.|||+||||+++||.+|||+|||+||++||||+++ ++.|+++|++|++||++|+|+.+|+.||++|..+
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g 70 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDG 70 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccc
Confidence 48999999999999999999999999999999997 4678999999999999999999999999999764
No 61
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.65 E-value=2.2e-16 Score=134.03 Aligned_cols=99 Identities=18% Similarity=0.413 Sum_probs=85.1
Q ss_pred ccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCC-CCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770 129 KLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSP-LGVGFFTVHVHNEQGLARRLGVGSQLPQI 207 (554)
Q Consensus 129 ~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~-~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti 207 (554)
+.+||.++|++.+. +.+++++|.||++||++|+.+.|.|+++++.+++ ..+.+++|||+.+ +++..+++.+ +||+
T Consensus 2 v~~l~~~~f~~~i~--~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~-~Pt~ 77 (104)
T cd02995 2 VKVVVGKNFDEVVL--DSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDG-FPTI 77 (104)
T ss_pred eEEEchhhhHHHHh--CCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCC-CCEE
Confidence 56889999999886 3457999999999999999999999999999986 3599999999987 6889999997 9999
Q ss_pred eeccCCe---EEEEeCCcccHHHHHHHH
Q psy16770 208 ALLTDGR---TSFFKEPSFSVQKMVEFF 232 (554)
Q Consensus 208 ~~~~~g~---~~~y~~g~~~~~~i~~fl 232 (554)
++|.+|+ ...|. |.++.++|++||
T Consensus 78 ~~~~~~~~~~~~~~~-g~~~~~~l~~fi 104 (104)
T cd02995 78 LFFPAGDKSNPIKYE-GDRTLEDLIKFI 104 (104)
T ss_pred EEEcCCCcCCceEcc-CCcCHHHHHhhC
Confidence 9998886 34455 456889999885
No 62
>KOG0715|consensus
Probab=99.65 E-value=1.3e-16 Score=158.84 Aligned_cols=70 Identities=44% Similarity=0.839 Sum_probs=67.2
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770 18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD 87 (554)
Q Consensus 18 ~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~ 87 (554)
..|||+||||+++|+.+|||+||++|||++|||.|.+++|.++|++|.+|||+|+|+++|+.||.+|..+
T Consensus 42 ~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~ 111 (288)
T KOG0715|consen 42 KEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ 111 (288)
T ss_pred CcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence 3499999999999999999999999999999999999999999999999999999999999999998764
No 63
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.65 E-value=4.6e-16 Score=131.45 Aligned_cols=100 Identities=28% Similarity=0.509 Sum_probs=87.4
Q ss_pred cccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCC-CEEEEEEEecCcHHHHHHhCCcCCCCcceec
Q psy16770 132 TTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPL-GVGFFTVHVHNEQGLARRLGVGSQLPQIALL 210 (554)
Q Consensus 132 Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~-~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~ 210 (554)
||.++|++.+. .+++++|.||++||++|+++.|.|+++++.+++. ++.++.+||++++.+|++|+|.+ +|++.+|
T Consensus 1 l~~~~~~~~~~---~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~-~P~~~~~ 76 (102)
T TIGR01126 1 LTASNFDDIVL---SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSG-FPTIKFF 76 (102)
T ss_pred CchhhHHHHhc---cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCc-CCEEEEe
Confidence 56788998884 6789999999999999999999999999999864 39999999999999999999997 9999999
Q ss_pred cCCe-EEEEeCCcccHHHHHHHHHHhC
Q psy16770 211 TDGR-TSFFKEPSFSVQKMVEFFRLKL 236 (554)
Q Consensus 211 ~~g~-~~~y~~g~~~~~~i~~fl~~~~ 236 (554)
.+|+ ...|.| ..+.+.|..|+.+++
T Consensus 77 ~~~~~~~~~~g-~~~~~~l~~~i~~~~ 102 (102)
T TIGR01126 77 PKGKKPVDYEG-GRDLEAIVEFVNEKS 102 (102)
T ss_pred cCCCcceeecC-CCCHHHHHHHHHhcC
Confidence 8777 555655 468899999998753
No 64
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.65 E-value=3.2e-16 Score=133.00 Aligned_cols=100 Identities=22% Similarity=0.375 Sum_probs=86.8
Q ss_pred ccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCC-CCEEEEEEEecC--cHHHHHHhCCcCCCC
Q psy16770 129 KLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSP-LGVGFFTVHVHN--EQGLARRLGVGSQLP 205 (554)
Q Consensus 129 ~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~-~~v~~~~Vd~~~--~~~l~~~~~v~~~~P 205 (554)
+.+|+..+|+..+. .+++++|.||++||++|+++.|.+.++++.+.. ..+.++.+||+. +..+|++++|++ +|
T Consensus 2 ~~~l~~~~~~~~~~---~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~-~P 77 (104)
T cd02997 2 VVHLTDEDFRKFLK---KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKG-FP 77 (104)
T ss_pred eEEechHhHHHHHh---hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCcc-cc
Confidence 56788899998883 556999999999999999999999999999872 258999999999 999999999997 99
Q ss_pred cceeccCCeEEEEeCCcccHHHHHHHH
Q psy16770 206 QIALLTDGRTSFFKEPSFSVQKMVEFF 232 (554)
Q Consensus 206 ti~~~~~g~~~~y~~g~~~~~~i~~fl 232 (554)
|+++|++|+....+.|..+.+.+++|+
T Consensus 78 t~~~~~~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 78 TFKYFENGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred EEEEEeCCCeeEEeCCCCCHHHHHhhC
Confidence 999999998665555666889998875
No 65
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.64 E-value=2e-16 Score=134.75 Aligned_cols=87 Identities=13% Similarity=0.321 Sum_probs=75.3
Q ss_pred ccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCe
Q psy16770 135 WNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGR 214 (554)
Q Consensus 135 ~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~ 214 (554)
++|++.+.. +.+++++|.|||+||++|+.+.|.++++++++.+. +.|++||++++++++++|+|.+ +||+++|++|+
T Consensus 3 ~~~~~~i~~-~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~-v~f~kVDvD~~~~la~~~~V~~-iPTf~~fk~G~ 79 (114)
T cd02954 3 WAVDQAILS-EEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF-AVIYLVDIDEVPDFNKMYELYD-PPTVMFFFRNK 79 (114)
T ss_pred HHHHHHHhc-cCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc-eEEEEEECCCCHHHHHHcCCCC-CCEEEEEECCE
Confidence 456666642 25779999999999999999999999999999764 8999999999999999999997 99999999999
Q ss_pred EEEEeCCccc
Q psy16770 215 TSFFKEPSFS 224 (554)
Q Consensus 215 ~~~y~~g~~~ 224 (554)
.+...-|..+
T Consensus 80 ~v~~~~G~~~ 89 (114)
T cd02954 80 HMKIDLGTGN 89 (114)
T ss_pred EEEEEcCCCC
Confidence 8777655433
No 66
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.64 E-value=1.7e-16 Score=166.07 Aligned_cols=69 Identities=46% Similarity=0.876 Sum_probs=65.4
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770 19 LDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNND-PTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD 87 (554)
Q Consensus 19 ~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~-~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~ 87 (554)
.|||+||||+++|+.+|||+|||+||++||||++++ +.|+++|++|++||++|+||.+|+.||.+|..+
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~ 72 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAG 72 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchh
Confidence 699999999999999999999999999999999974 678899999999999999999999999999865
No 67
>PLN02309 5'-adenylylsulfate reductase
Probab=99.64 E-value=2.8e-16 Score=165.05 Aligned_cols=108 Identities=19% Similarity=0.410 Sum_probs=96.2
Q ss_pred ccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEec-CcHHHHH-HhCCcCCC
Q psy16770 127 FHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVH-NEQGLAR-RLGVGSQL 204 (554)
Q Consensus 127 ~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~-~~~~l~~-~~~v~~~~ 204 (554)
..+++||.++|++.+...+.+++++|+||||||++|+.+.|.|+++++.+.+.++.|++|||+ .+..+|. +++|.+ |
T Consensus 345 ~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~-~ 423 (457)
T PLN02309 345 QNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGS-F 423 (457)
T ss_pred CCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCce-e
Confidence 468889999999988655678999999999999999999999999999998767999999999 8889997 699997 9
Q ss_pred CcceeccCCe--EEEEeCCcccHHHHHHHHHHh
Q psy16770 205 PQIALLTDGR--TSFFKEPSFSVQKMVEFFRLK 235 (554)
Q Consensus 205 Pti~~~~~g~--~~~y~~g~~~~~~i~~fl~~~ 235 (554)
||+++|++|. ++.|.++.++.++|+.|+...
T Consensus 424 PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 424 PTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred eEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 9999997664 577887778999999999764
No 68
>KOG0691|consensus
Probab=99.64 E-value=1.8e-16 Score=155.97 Aligned_cols=70 Identities=44% Similarity=0.780 Sum_probs=67.4
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770 18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-DPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD 87 (554)
Q Consensus 18 ~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~-~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~ 87 (554)
..|||.+|||++.++.++|++|||+.+++||||||| +|.|.++|+.|.+||++|+|+..|.+||..|..+
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~ 74 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSG 74 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc
Confidence 689999999999999999999999999999999998 6889999999999999999999999999999875
No 69
>PRK10996 thioredoxin 2; Provisional
Probab=99.64 E-value=6.9e-16 Score=138.31 Aligned_cols=104 Identities=23% Similarity=0.428 Sum_probs=93.6
Q ss_pred cccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770 128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI 207 (554)
Q Consensus 128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti 207 (554)
.++.++.++|+..+ +.+++++|.||++||++|+.+.|.++++++.+.+ ++.+++||+++++.++++++|.+ +||+
T Consensus 36 ~~i~~~~~~~~~~i---~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~~~l~~~~~V~~-~Ptl 110 (139)
T PRK10996 36 EVINATGETLDKLL---QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTEAERELSARFRIRS-IPTI 110 (139)
T ss_pred CCEEcCHHHHHHHH---hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEeCCCCHHHHHhcCCCc-cCEE
Confidence 36678899999877 4578999999999999999999999999999887 59999999999999999999997 9999
Q ss_pred eeccCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770 208 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL 236 (554)
Q Consensus 208 ~~~~~g~~~~y~~g~~~~~~i~~fl~~~~ 236 (554)
++|++|+.+....|..+.+.|.+|+.+.+
T Consensus 111 ii~~~G~~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 111 MIFKNGQVVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred EEEECCEEEEEEcCCCCHHHHHHHHHHhC
Confidence 99999998887777778899999998753
No 70
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.64 E-value=2.9e-16 Score=164.90 Aligned_cols=107 Identities=21% Similarity=0.387 Sum_probs=93.4
Q ss_pred ccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcH-HHH-HHhCCcCCC
Q psy16770 127 FHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQ-GLA-RRLGVGSQL 204 (554)
Q Consensus 127 ~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~-~l~-~~~~v~~~~ 204 (554)
..+++||.+||++.|..++.++++||.||||||++|+.+.|.|+++++++++.++.|++|||+.+. .++ ++|+|.+ +
T Consensus 351 ~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~-~ 429 (463)
T TIGR00424 351 NNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGS-F 429 (463)
T ss_pred CCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCc-c
Confidence 478899999999998544678899999999999999999999999999998767999999999864 454 7899997 9
Q ss_pred CcceeccCCe--EEEEeCCcccHHHHHHHHHH
Q psy16770 205 PQIALLTDGR--TSFFKEPSFSVQKMVEFFRL 234 (554)
Q Consensus 205 Pti~~~~~g~--~~~y~~g~~~~~~i~~fl~~ 234 (554)
||+++|++|. ++.|.+|.++.++|+.|+.-
T Consensus 430 PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 430 PTILFFPKHSSRPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred ceEEEEECCCCCceeCCCCCCCHHHHHHHHHh
Confidence 9999998875 46777777899999999964
No 71
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.64 E-value=2.7e-16 Score=171.67 Aligned_cols=72 Identities=32% Similarity=0.539 Sum_probs=68.0
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770 16 AVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD 87 (554)
Q Consensus 16 ~~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~ 87 (554)
....++|++|||+++||..+||+|||+||++||||+++++.|.++|++|++||++||||.+|+.||.+|..+
T Consensus 570 ~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~G 641 (1136)
T PTZ00341 570 IPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDG 641 (1136)
T ss_pred CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhccccc
Confidence 356899999999999999999999999999999999987788899999999999999999999999999865
No 72
>KOG0717|consensus
Probab=99.63 E-value=1.6e-16 Score=160.04 Aligned_cols=73 Identities=41% Similarity=0.635 Sum_probs=67.0
Q ss_pred ccCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--hhHHHHHHHHHHHHHHcCChHHHHhhhccCCC
Q psy16770 14 NCAVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNND--PTAQEKFLQLTEAYNILSDAERRKQYDLFGTT 86 (554)
Q Consensus 14 ~~~~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~--~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~ 86 (554)
.+...+++|++|||.+.|+..+||++||+||++|||||||+ ..|.++|+.|+.||+|||||..|.=||.+...
T Consensus 3 ~~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreq 77 (508)
T KOG0717|consen 3 NPFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQ 77 (508)
T ss_pred CchhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHH
Confidence 35567899999999999999999999999999999999986 46889999999999999999999999987663
No 73
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.63 E-value=3.4e-16 Score=163.02 Aligned_cols=69 Identities=54% Similarity=0.919 Sum_probs=66.3
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770 19 LDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD 87 (554)
Q Consensus 19 ~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~ 87 (554)
.|||++|||+++||.++||+|||+|+++||||+++++.++++|++|++||++|+||.+|+.||++|..+
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~ 70 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAP 70 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcc
Confidence 599999999999999999999999999999999988889999999999999999999999999999764
No 74
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.62 E-value=1.2e-15 Score=129.80 Aligned_cols=95 Identities=24% Similarity=0.414 Sum_probs=81.7
Q ss_pred ccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCC--CEEEEEEEecCcHHHHHHhCCcCCCCcceeccC
Q psy16770 135 WNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPL--GVGFFTVHVHNEQGLARRLGVGSQLPQIALLTD 212 (554)
Q Consensus 135 ~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~--~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~ 212 (554)
++|++.. .+++++|.||++||++|+++.|.|+++++.+++. ++.++.+||+.++.+|++++|.+ +||+++|.+
T Consensus 7 ~~~~~~~----~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~-~Pt~~l~~~ 81 (104)
T cd03000 7 DSFKDVR----KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRG-YPTIKLLKG 81 (104)
T ss_pred hhhhhhc----cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCcc-ccEEEEEcC
Confidence 6777632 4679999999999999999999999999998632 49999999999999999999997 999999988
Q ss_pred CeEEEEeCCcccHHHHHHHHHHh
Q psy16770 213 GRTSFFKEPSFSVQKMVEFFRLK 235 (554)
Q Consensus 213 g~~~~y~~g~~~~~~i~~fl~~~ 235 (554)
|....+.|. ++.+.|.+|+++.
T Consensus 82 ~~~~~~~G~-~~~~~l~~~~~~~ 103 (104)
T cd03000 82 DLAYNYRGP-RTKDDIVEFANRV 103 (104)
T ss_pred CCceeecCC-CCHHHHHHHHHhh
Confidence 866666654 6889999999864
No 75
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.62 E-value=4.5e-16 Score=161.97 Aligned_cols=69 Identities=43% Similarity=0.850 Sum_probs=66.4
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770 19 LDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD 87 (554)
Q Consensus 19 ~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~ 87 (554)
.|||+||||+++||.+|||+|||+|+++||||+++++.++++|++|++||++|+||.+|+.||.+|..+
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g 71 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEAG 71 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhccccc
Confidence 699999999999999999999999999999999988889999999999999999999999999999764
No 76
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.62 E-value=4.6e-16 Score=157.68 Aligned_cols=68 Identities=37% Similarity=0.714 Sum_probs=65.2
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCCC
Q psy16770 19 LDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTT 86 (554)
Q Consensus 19 ~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~ 86 (554)
.|||++|||++.||.+|||+|||+||++||||+++++.++++|++|++||++|+||.+|+.||.+|..
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~ 71 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQH 71 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence 69999999999999999999999999999999998888999999999999999999999999998753
No 77
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.62 E-value=6e-16 Score=160.56 Aligned_cols=69 Identities=46% Similarity=0.835 Sum_probs=65.1
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh--hHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770 19 LDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDP--TAQEKFLQLTEAYNILSDAERRKQYDLFGTTD 87 (554)
Q Consensus 19 ~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~--~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~ 87 (554)
.|||+||||+++||.+|||+|||+||++||||++++. .|+++|++|++||++|+|+.+|+.||.+|..+
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~ 73 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVD 73 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcc
Confidence 6999999999999999999999999999999999743 68899999999999999999999999999864
No 78
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.61 E-value=1.5e-15 Score=129.03 Aligned_cols=96 Identities=15% Similarity=0.164 Sum_probs=81.0
Q ss_pred ccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcH---HHHHHhCCcCCCCccee
Q psy16770 133 THWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQ---GLARRLGVGSQLPQIAL 209 (554)
Q Consensus 133 t~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~---~l~~~~~v~~~~Pti~~ 209 (554)
|.++|++.|.. ..+++++|.|||+||++|+.+.|.++++++++. ++.|++||++++. .++++++|++ +||+++
T Consensus 2 ~~~~~~~~i~~-~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~--~v~~~~vd~d~~~~~~~l~~~~~V~~-~Pt~~~ 77 (103)
T cd02985 2 SVEELDEALKK-AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN--DVVFLLVNGDENDSTMELCRREKIIE-VPHFLF 77 (103)
T ss_pred CHHHHHHHHHH-cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC--CCEEEEEECCCChHHHHHHHHcCCCc-CCEEEE
Confidence 35677777742 247899999999999999999999999999993 5899999999874 8999999997 999999
Q ss_pred ccCCeEEEEeCCcccHHHHHHHHH
Q psy16770 210 LTDGRTSFFKEPSFSVQKMVEFFR 233 (554)
Q Consensus 210 ~~~g~~~~y~~g~~~~~~i~~fl~ 233 (554)
|++|+.+....|. ..+.|.+-+.
T Consensus 78 ~~~G~~v~~~~G~-~~~~l~~~~~ 100 (103)
T cd02985 78 YKDGEKIHEEEGI-GPDELIGDVL 100 (103)
T ss_pred EeCCeEEEEEeCC-CHHHHHHHHH
Confidence 9999987777675 5677776654
No 79
>KOG0718|consensus
Probab=99.61 E-value=5e-16 Score=156.38 Aligned_cols=71 Identities=41% Similarity=0.778 Sum_probs=66.2
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh----hHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770 17 VSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDP----TAQEKFLQLTEAYNILSDAERRKQYDLFGTTD 87 (554)
Q Consensus 17 ~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~----~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~ 87 (554)
.+.|+|.+|||+++||.+|||+||||+++.+||||..+| .|++.|+.|.+|||+||||.+|..||.+|..+
T Consensus 7 ~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qG 81 (546)
T KOG0718|consen 7 DEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQG 81 (546)
T ss_pred chhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcc
Confidence 356999999999999999999999999999999998753 48899999999999999999999999999987
No 80
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.61 E-value=1.5e-15 Score=129.05 Aligned_cols=100 Identities=23% Similarity=0.455 Sum_probs=84.9
Q ss_pred ccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCC-CCEEEEEEEecC-cHHHHHHhCCcCCCCc
Q psy16770 129 KLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSP-LGVGFFTVHVHN-EQGLARRLGVGSQLPQ 206 (554)
Q Consensus 129 ~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~-~~v~~~~Vd~~~-~~~l~~~~~v~~~~Pt 206 (554)
+.+|+.++|+..+. +.+++++|+||++||++|+++.|.|+++++.++. .++.++.+||.. ++.+|++++|.+ +|+
T Consensus 2 ~~~l~~~~~~~~~~--~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~-~P~ 78 (105)
T cd02998 2 VVELTDSNFDKVVG--DDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSG-FPT 78 (105)
T ss_pred eEEcchhcHHHHhc--CCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCC-cCE
Confidence 46788999999774 3456999999999999999999999999999873 259999999999 999999999997 999
Q ss_pred ceeccCC-eE-EEEeCCcccHHHHHHHH
Q psy16770 207 IALLTDG-RT-SFFKEPSFSVQKMVEFF 232 (554)
Q Consensus 207 i~~~~~g-~~-~~y~~g~~~~~~i~~fl 232 (554)
+++|.+| +. ..|. |.++.+.|.+|+
T Consensus 79 ~~~~~~~~~~~~~~~-g~~~~~~l~~~i 105 (105)
T cd02998 79 LKFFPKGSTEPVKYE-GGRDLEDLVKFV 105 (105)
T ss_pred EEEEeCCCCCccccC-CccCHHHHHhhC
Confidence 9999766 33 4444 446889998885
No 81
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.61 E-value=8.3e-16 Score=160.82 Aligned_cols=70 Identities=47% Similarity=0.869 Sum_probs=66.1
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770 18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-DPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD 87 (554)
Q Consensus 18 ~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~-~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~ 87 (554)
..|||++|||+++|+.+|||+|||+||++||||+++ ++.|+++|++|++||++|+||.+|+.||.+|..+
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~ 74 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAG 74 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccc
Confidence 579999999999999999999999999999999997 4578999999999999999999999999999764
No 82
>KOG0719|consensus
Probab=99.60 E-value=1e-15 Score=141.36 Aligned_cols=73 Identities=51% Similarity=0.746 Sum_probs=66.4
Q ss_pred cCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---hhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770 15 CAVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNND---PTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD 87 (554)
Q Consensus 15 ~~~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~---~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~ 87 (554)
+....|||+||||.++|+..+||+|||+|+++||||+++. ..+.++|+.++.||+||+|.++|+.||..|..+
T Consensus 10 ~f~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id 85 (264)
T KOG0719|consen 10 SFNKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID 85 (264)
T ss_pred cccccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence 3446799999999999999999999999999999999952 458899999999999999999999999988765
No 83
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.60 E-value=3.3e-15 Score=125.75 Aligned_cols=101 Identities=24% Similarity=0.493 Sum_probs=88.0
Q ss_pred cccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceecc
Q psy16770 132 TTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLT 211 (554)
Q Consensus 132 Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~ 211 (554)
+|.++|...+. +.+++++|.||++||++|+.+.|.++++++.+.+ ++.++.||++.+..++++++|.+ +||+++|.
T Consensus 1 i~~~~~~~~~~--~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~-~P~~~~~~ 76 (101)
T TIGR01068 1 LTDANFDETIA--SSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEG-KVKFVKLNVDENPDIAAKYGIRS-IPTLLLFK 76 (101)
T ss_pred CCHHHHHHHHh--hcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC-CeEEEEEECCCCHHHHHHcCCCc-CCEEEEEe
Confidence 35667777774 3467999999999999999999999999998875 49999999999999999999997 99999999
Q ss_pred CCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770 212 DGRTSFFKEPSFSVQKMVEFFRLKL 236 (554)
Q Consensus 212 ~g~~~~y~~g~~~~~~i~~fl~~~~ 236 (554)
+|+......|..+.+.+.+|+.+.+
T Consensus 77 ~g~~~~~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 77 NGKEVDRSVGALPKAALKQLINKNL 101 (101)
T ss_pred CCcEeeeecCCCCHHHHHHHHHhhC
Confidence 9988776667678899999998753
No 84
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.59 E-value=1.6e-15 Score=115.40 Aligned_cols=57 Identities=56% Similarity=0.948 Sum_probs=54.0
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC--ChhHHHHHHHHHHHHHHcCChH
Q psy16770 19 LDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN--DPTAQEKFLQLTEAYNILSDAE 75 (554)
Q Consensus 19 ~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~--~~~~~~~~~~i~~Ay~~L~~~~ 75 (554)
.|||++|||+++++.++||+||+++++++|||+++ .+.+.++|.+|++||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 48999999999999999999999999999999998 5778999999999999999985
No 85
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.59 E-value=4.6e-15 Score=125.47 Aligned_cols=96 Identities=19% Similarity=0.149 Sum_probs=85.5
Q ss_pred ccccccccccccccCCCCCCcEEEEEEccc--ccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCc
Q psy16770 129 KLSTTHWNFEKNYIPKSYTTPHLILFYSDW--CFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQ 206 (554)
Q Consensus 129 ~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~w--C~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pt 206 (554)
.-.+|..||++.+ ..+.+.+|.||++| |++|..+.|.++++++++.+. +.+++||+++++.++.+|+|++ +||
T Consensus 12 ~~~~~~~~~~~~~---~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~-v~f~kVdid~~~~la~~f~V~s-IPT 86 (111)
T cd02965 12 WPRVDAATLDDWL---AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR-FRAAVVGRADEQALAARFGVLR-TPA 86 (111)
T ss_pred CcccccccHHHHH---hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc-EEEEEEECCCCHHHHHHcCCCc-CCE
Confidence 3468899999877 57789999999997 999999999999999999874 8999999999999999999998 999
Q ss_pred ceeccCCeEEEEeCCcccHHHHH
Q psy16770 207 IALLTDGRTSFFKEPSFSVQKMV 229 (554)
Q Consensus 207 i~~~~~g~~~~y~~g~~~~~~i~ 229 (554)
+++|++|+.+....|..+.+.+.
T Consensus 87 li~fkdGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 87 LLFFRDGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred EEEEECCEEEEEEeCccCHHHHh
Confidence 99999999987776766766653
No 86
>KOG1731|consensus
Probab=99.59 E-value=2e-15 Score=156.61 Aligned_cols=222 Identities=16% Similarity=0.208 Sum_probs=141.0
Q ss_pred ccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCC--EEEEEEEecC--cHHHHHHhCCcC
Q psy16770 127 FHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLG--VGFFTVHVHN--EQGLARRLGVGS 202 (554)
Q Consensus 127 ~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~--v~~~~Vd~~~--~~~l~~~~~v~~ 202 (554)
+.+++|+..+|...|.. +.+.++|+||++|||||++++|.|+++|+.+.++. +.++.|||.. |..+|++++|++
T Consensus 39 D~ii~Ld~~tf~~~v~~--~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~ 116 (606)
T KOG1731|consen 39 DPIIELDVDTFNAAVFG--SRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSG 116 (606)
T ss_pred CCeEEeehhhhHHHhcc--cchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCC
Confidence 67999999999999984 44789999999999999999999999999998653 8999999986 778999999998
Q ss_pred CCCcceeccCCeEE----EEeCCcccHHHHHHHHHHhC---------C--CCccccCCc-ccHHHHHhhhhcCCceEEEE
Q psy16770 203 QLPQIALLTDGRTS----FFKEPSFSVQKMVEFFRLKL---------P--YKLIVPLSA-TNVDAFLDNWREDNKVHALL 266 (554)
Q Consensus 203 ~~Pti~~~~~g~~~----~y~~g~~~~~~i~~fl~~~~---------~--~~~v~~~t~-~~~~~fl~~~~~~~~~~v~~ 266 (554)
|||+++|..+... ....+.....++.+.+.+.+ | |. ...+++ ..+.+..++-......++++
T Consensus 117 -~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~~~~~~~WP~-f~pl~~~~~~~~l~~~~~~~~~yvAiv 194 (606)
T KOG1731|consen 117 -YPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDAQNRYPSWPN-FDPLKDTTTLEELDEGISTTANYVAIV 194 (606)
T ss_pred -CceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHhhhcCCCCCC-CCCCCCcchHHHHhcccccccceeEEE
Confidence 9999999544211 11112223455655555432 1 11 112222 22322222211223466777
Q ss_pred EecCCchhHHHHHHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCCcee-ecCCCChhHHHhHHh
Q psy16770 267 FQRSLPVRLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASI-TMNSIPVPTLQDITD 345 (554)
Q Consensus 267 f~~~~~~~~~~~~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i-~~~~~~~~~l~~fi~ 345 (554)
|......-.+..++...-.+.+.+..+.+. ....+.+ +++.. +|..++|+++..++.... +..+.....|.++|.
T Consensus 195 ~e~~~s~lg~~~~l~~l~~~~v~vr~~~d~--q~~~~~~-l~~~~-~~~~llfrnG~~q~l~~~~~s~~~y~~~I~~~lg 270 (606)
T KOG1731|consen 195 FETEPSDLGWANLLNDLPSKQVGVRARLDT--QNFPLFG-LKPDN-FPLALLFRNGEQQPLWPSSSSRSAYVKKIDDLLG 270 (606)
T ss_pred EecCCcccHHHHHHhhccCCCcceEEEecc--hhccccc-cCCCC-chhhhhhcCCcccccccccccHHHHHHHHHHHhc
Confidence 766565555555554433456666666544 2333444 66665 899999998777653211 122233356777775
Q ss_pred cC---CCccccccc
Q psy16770 346 NN---PYLTLPRIS 356 (554)
Q Consensus 346 ~~---~~~~v~~lt 356 (554)
.. ..|+++-.+
T Consensus 271 ~~~~a~~pt~~p~~ 284 (606)
T KOG1731|consen 271 DKNEASGPTLHPIT 284 (606)
T ss_pred CccccCCCCcCccc
Confidence 54 334444444
No 87
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.59 E-value=2.7e-15 Score=129.77 Aligned_cols=100 Identities=22% Similarity=0.385 Sum_probs=82.5
Q ss_pred cccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCC--CEEEEEEEecC--cHHHHHHhCCcCC
Q psy16770 128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPL--GVGFFTVHVHN--EQGLARRLGVGSQ 203 (554)
Q Consensus 128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~--~v~~~~Vd~~~--~~~l~~~~~v~~~ 203 (554)
.+++|+.++|++.|. +.+++++|.||++||++|+.+.|.|+++++.+++. .+.++.|||+. +..+|++++|++
T Consensus 2 ~v~~l~~~~f~~~i~--~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~- 78 (114)
T cd02992 2 PVIVLDAASFNSALL--GSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTG- 78 (114)
T ss_pred CeEECCHHhHHHHHh--cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCC-
Confidence 478899999999986 44579999999999999999999999999988642 38999999864 678999999997
Q ss_pred CCcceeccCCeE-----EEEeCCcccHHHHHH
Q psy16770 204 LPQIALLTDGRT-----SFFKEPSFSVQKMVE 230 (554)
Q Consensus 204 ~Pti~~~~~g~~-----~~y~~g~~~~~~i~~ 230 (554)
+||+++|++|.. ..+.|+.+..+.+..
T Consensus 79 ~Pt~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (114)
T cd02992 79 YPTLRYFPPFSKEATDGLKQEGPERDVNELRE 110 (114)
T ss_pred CCEEEEECCCCccCCCCCcccCCccCHHHHHH
Confidence 999999988864 355666555555533
No 88
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.58 E-value=2.2e-15 Score=136.03 Aligned_cols=92 Identities=20% Similarity=0.346 Sum_probs=81.0
Q ss_pred cccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCC----
Q psy16770 128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQ---- 203 (554)
Q Consensus 128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~---- 203 (554)
.+.+++.++|++.+.. +.+++++|+||||||++|+.+.|.++++++++++.++.|++|||++++++|++++|. .
T Consensus 29 ~v~~l~~~~f~~~l~~-~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~-~~~~v 106 (152)
T cd02962 29 HIKYFTPKTLEEELER-DKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVS-TSPLS 106 (152)
T ss_pred ccEEcCHHHHHHHHHh-cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCce-ecCCc
Confidence 5778899999987742 345799999999999999999999999999997656999999999999999999997 4
Q ss_pred --CCcceeccCCeEEEEeCC
Q psy16770 204 --LPQIALLTDGRTSFFKEP 221 (554)
Q Consensus 204 --~Pti~~~~~g~~~~y~~g 221 (554)
+||+++|++|+.+....|
T Consensus 107 ~~~PT~ilf~~Gk~v~r~~G 126 (152)
T cd02962 107 KQLPTIILFQGGKEVARRPY 126 (152)
T ss_pred CCCCEEEEEECCEEEEEEec
Confidence 999999999998766654
No 89
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.58 E-value=3e-15 Score=111.69 Aligned_cols=54 Identities=56% Similarity=0.976 Sum_probs=51.7
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHHHHHHcCC
Q psy16770 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNND-PTAQEKFLQLTEAYNILSD 73 (554)
Q Consensus 20 d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~-~~~~~~~~~i~~Ay~~L~~ 73 (554)
|||++|||+++++.++||++||+|+++||||+++. +.+.++|.+|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 79999999999999999999999999999999976 6789999999999999986
No 90
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.57 E-value=2.6e-15 Score=129.82 Aligned_cols=90 Identities=14% Similarity=0.171 Sum_probs=79.5
Q ss_pred cccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770 128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI 207 (554)
Q Consensus 128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti 207 (554)
.+.++|.++|.+.|...+.+++++|.||+|||++|+.+.|.++++++.+. ++.|++||++++ .++++++|++ +||+
T Consensus 5 ~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~--~v~f~~vd~~~~-~l~~~~~i~~-~Pt~ 80 (113)
T cd02957 5 EVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP--ETKFVKINAEKA-FLVNYLDIKV-LPTL 80 (113)
T ss_pred eEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC--CcEEEEEEchhh-HHHHhcCCCc-CCEE
Confidence 36778899999998644335899999999999999999999999999986 489999999999 9999999997 9999
Q ss_pred eeccCCeEEEEeCC
Q psy16770 208 ALLTDGRTSFFKEP 221 (554)
Q Consensus 208 ~~~~~g~~~~y~~g 221 (554)
++|++|+.+....|
T Consensus 81 ~~f~~G~~v~~~~G 94 (113)
T cd02957 81 LVYKNGELIDNIVG 94 (113)
T ss_pred EEEECCEEEEEEec
Confidence 99999998766645
No 91
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.57 E-value=3.4e-15 Score=125.20 Aligned_cols=98 Identities=27% Similarity=0.474 Sum_probs=83.2
Q ss_pred cccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhC-CCCEEEEEEEecCcHHHHHHhCCcCCCCcce
Q psy16770 130 LSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELS-PLGVGFFTVHVHNEQGLARRLGVGSQLPQIA 208 (554)
Q Consensus 130 ~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~-~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~ 208 (554)
++||.++|.+.+. .+++++|.||++||++|+.+.|.|+++++.++ ..++.++.|||+++..+|++++|++ +||++
T Consensus 1 ~~l~~~~~~~~i~---~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~-~Pt~~ 76 (101)
T cd02961 1 VELTDDNFDELVK---DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRG-YPTIK 76 (101)
T ss_pred CcccHHHHHHHHh---CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCC-CCEEE
Confidence 3578889999884 44599999999999999999999999999994 3369999999999999999999997 99999
Q ss_pred eccCC-eE-EEEeCCcccHHHHHHHH
Q psy16770 209 LLTDG-RT-SFFKEPSFSVQKMVEFF 232 (554)
Q Consensus 209 ~~~~g-~~-~~y~~g~~~~~~i~~fl 232 (554)
+|.+| .. ..|. |..+.++|.+|+
T Consensus 77 ~~~~~~~~~~~~~-g~~~~~~i~~~~ 101 (101)
T cd02961 77 LFPNGSKEPVKYE-GPRTLESLVEFI 101 (101)
T ss_pred EEcCCCcccccCC-CCcCHHHHHhhC
Confidence 99877 44 4455 445888888874
No 92
>KOG0190|consensus
Probab=99.55 E-value=3e-15 Score=156.15 Aligned_cols=105 Identities=17% Similarity=0.364 Sum_probs=89.7
Q ss_pred ccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCC-CEEEEEEEecCcHHHHHHhCCcCCCC
Q psy16770 127 FHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPL-GVGFFTVHVHNEQGLARRLGVGSQLP 205 (554)
Q Consensus 127 ~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~-~v~~~~Vd~~~~~~l~~~~~v~~~~P 205 (554)
..|..|..+||+..|. +.++-+||+|||||||||++++|.|+++|+.+++. ++.++++|++.|. .....+++ ||
T Consensus 366 ~pVkvvVgknfd~iv~--de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd--~~~~~~~~-fP 440 (493)
T KOG0190|consen 366 SPVKVVVGKNFDDIVL--DEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATAND--VPSLKVDG-FP 440 (493)
T ss_pred CCeEEEeecCHHHHhh--ccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecccccc--Cccccccc-cc
Confidence 4688899999999997 56788999999999999999999999999999965 6999999999986 34457887 99
Q ss_pred cceeccCCe---EEEEeCCcccHHHHHHHHHHhCC
Q psy16770 206 QIALLTDGR---TSFFKEPSFSVQKMVEFFRLKLP 237 (554)
Q Consensus 206 ti~~~~~g~---~~~y~~g~~~~~~i~~fl~~~~~ 237 (554)
||++|+.|. ++.|. |.|+.+++..|+.+.-.
T Consensus 441 TI~~~pag~k~~pv~y~-g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 441 TILFFPAGHKSNPVIYN-GDRTLEDLKKFIKKSAT 474 (493)
T ss_pred eEEEecCCCCCCCcccC-CCcchHHHHhhhccCCC
Confidence 999997664 45565 55689999999987754
No 93
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.54 E-value=1.4e-14 Score=121.48 Aligned_cols=95 Identities=15% Similarity=0.361 Sum_probs=81.6
Q ss_pred cccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCC
Q psy16770 134 HWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDG 213 (554)
Q Consensus 134 ~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g 213 (554)
.++|++.+.... +++++|.||++||++|+++.|.++++++.+.. .+.+++||+++++.++++|+|.+ +||+++|.+|
T Consensus 2 ~~~~~~~~~~~~-~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~-~i~~~~vd~~~~~~~~~~~~i~~-~Pt~~~~~~g 78 (97)
T cd02984 2 EEEFEELLKSDA-SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP-SVLFLSIEAEELPEISEKFEITA-VPTFVFFRNG 78 (97)
T ss_pred HHHHHHHHhhCC-CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC-ceEEEEEccccCHHHHHhcCCcc-ccEEEEEECC
Confidence 456777775332 68999999999999999999999999999744 69999999999999999999997 9999999999
Q ss_pred eEEEEeCCcccHHHHHHHH
Q psy16770 214 RTSFFKEPSFSVQKMVEFF 232 (554)
Q Consensus 214 ~~~~y~~g~~~~~~i~~fl 232 (554)
+.+....|. ..+.|.+.+
T Consensus 79 ~~~~~~~g~-~~~~l~~~~ 96 (97)
T cd02984 79 TIVDRVSGA-DPKELAKKV 96 (97)
T ss_pred EEEEEEeCC-CHHHHHHhh
Confidence 988887775 567777654
No 94
>KOG0191|consensus
Probab=99.53 E-value=2.2e-14 Score=150.62 Aligned_cols=181 Identities=19% Similarity=0.275 Sum_probs=133.7
Q ss_pred cccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhC-CCCEEEEEEEecCcHHHHHHhCCcCCCCc
Q psy16770 128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELS-PLGVGFFTVHVHNEQGLARRLGVGSQLPQ 206 (554)
Q Consensus 128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~-~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pt 206 (554)
.+..++..+|...+. ..+..|+|.||+|||+||+.++|+|+++++.++ +.++.++.+||+.+..+|++++|++ |||
T Consensus 145 ~v~~l~~~~~~~~~~--~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~-~Pt 221 (383)
T KOG0191|consen 145 EVFELTKDNFDETVK--DSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRG-YPT 221 (383)
T ss_pred ceEEccccchhhhhh--ccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccC-Cce
Confidence 388899999998886 567899999999999999999999999999997 3469999999999999999999997 999
Q ss_pred ceeccCCeE-EEEeCCcccHHHHHHHHHHhCCCC-----ccccCCcc---------------------cHHHHHhhhhcC
Q psy16770 207 IALLTDGRT-SFFKEPSFSVQKMVEFFRLKLPYK-----LIVPLSAT---------------------NVDAFLDNWRED 259 (554)
Q Consensus 207 i~~~~~g~~-~~y~~g~~~~~~i~~fl~~~~~~~-----~v~~~t~~---------------------~~~~fl~~~~~~ 259 (554)
+++|.+|.. ..++.+.|+.+.|+.|+.+..+.. .....+.+ .+..+..+|+..
T Consensus 222 ~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (383)
T KOG0191|consen 222 LKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERRNIPEPELKEIEDKDTFSPTFLDTAEFLDSLEKKKNKFVKFYAPWCGH 301 (383)
T ss_pred EEEecCCCcccccccccccHHHHHHHHHhhcCCCCCCcccccccCccccccchhhhhhhhhhhHHhhhhHhhhhcchhhc
Confidence 999988877 777778889999999999887652 11111111 122333344333
Q ss_pred CceEEEEEecCCchhHHHHHHh-hccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCC
Q psy16770 260 NKVHALLFQRSLPVRLRYLINA-FKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKED 322 (554)
Q Consensus 260 ~~~~v~~f~~~~~~~~~~~~~a-~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~ 322 (554)
+......| ...+.. ......+.+..++|.. -..++.+..++. +|++.+++..
T Consensus 302 ~~~~~~~~--------~~~~~~~~~~~~~~~~~k~~~~~--~~~~~~~~~~~~-~~~~~~~~~~ 354 (383)
T KOG0191|consen 302 CGGFAPVY--------EDKAELGYPDLSKIKAAKLDCAL--LKSLCQKAIVRG-YPTIKLYNYG 354 (383)
T ss_pred ccccchhH--------HHHHhccccccccceeecccccc--ccchhhHhhhhc-CceeEeeccc
Confidence 33332222 222222 1235567777777764 333788888886 8999998763
No 95
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.53 E-value=1.3e-14 Score=155.39 Aligned_cols=69 Identities=39% Similarity=0.754 Sum_probs=66.0
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770 19 LDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD 87 (554)
Q Consensus 19 ~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~ 87 (554)
.|||++|||+++|+.++||+|||+|++++|||+++++.+.++|++|++||++|+||.+|+.||.+|..+
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG 70 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHDG 70 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccc
Confidence 699999999999999999999999999999999988888899999999999999999999999998765
No 96
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.52 E-value=3.2e-14 Score=125.95 Aligned_cols=100 Identities=9% Similarity=0.231 Sum_probs=81.8
Q ss_pred ccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcce-ecc
Q psy16770 133 THWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIA-LLT 211 (554)
Q Consensus 133 t~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~-~~~ 211 (554)
+.++|++.|... .+++++|.|||+||++|+.+.|.++++++++.+. +.|++||++++++++++|+|++ .||++ +|+
T Consensus 10 s~~e~d~~I~~~-~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~-~~~~kVDVDe~~dla~~y~I~~-~~t~~~ffk 86 (142)
T PLN00410 10 SGWAVDQAILAE-EERLVVIRFGHDWDETCMQMDEVLASVAETIKNF-AVIYLVDITEVPDFNTMYELYD-PCTVMFFFR 86 (142)
T ss_pred CHHHHHHHHHhc-CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc-eEEEEEECCCCHHHHHHcCccC-CCcEEEEEE
Confidence 467888888633 5789999999999999999999999999999864 8899999999999999999996 87777 889
Q ss_pred CCe-EEEEeCC--------cccHHHHHHHHHHh
Q psy16770 212 DGR-TSFFKEP--------SFSVQKMVEFFRLK 235 (554)
Q Consensus 212 ~g~-~~~y~~g--------~~~~~~i~~fl~~~ 235 (554)
+|+ .+.+..| ..+.++|++-+...
T Consensus 87 ~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~ 119 (142)
T PLN00410 87 NKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
T ss_pred CCeEEEEEecccccccccccCCHHHHHHHHHHH
Confidence 998 5666656 34556665555433
No 97
>KOG0907|consensus
Probab=99.52 E-value=4.8e-14 Score=119.24 Aligned_cols=85 Identities=20% Similarity=0.389 Sum_probs=75.4
Q ss_pred CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCcccH
Q psy16770 146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSV 225 (554)
Q Consensus 146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~ 225 (554)
.+++++|.|||+|||+|+.++|.+.+++.++.+ +.|.+||+++..++|++++|+. .||++++++|+.+...-|. +.
T Consensus 20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvde~~~~~~~~~V~~-~PTf~f~k~g~~~~~~vGa-~~ 95 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVDELEEVAKEFNVKA-MPTFVFYKGGEEVDEVVGA-NK 95 (106)
T ss_pred CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC--CEEEEEecccCHhHHHhcCceE-eeEEEEEECCEEEEEEecC-CH
Confidence 468999999999999999999999999999985 8999999999999999999997 9999999999987766564 55
Q ss_pred HHHHHHHHH
Q psy16770 226 QKMVEFFRL 234 (554)
Q Consensus 226 ~~i~~fl~~ 234 (554)
+.+.+.+.+
T Consensus 96 ~~l~~~i~~ 104 (106)
T KOG0907|consen 96 AELEKKIAK 104 (106)
T ss_pred HHHHHHHHh
Confidence 677776654
No 98
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.52 E-value=4e-13 Score=126.21 Aligned_cols=180 Identities=18% Similarity=0.324 Sum_probs=129.5
Q ss_pred EecCCchhHHHHHHhh-ccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCC-CChhHHHhHH
Q psy16770 267 FQRSLPVRLRYLINAF-KHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNS-IPVPTLQDIT 344 (554)
Q Consensus 267 f~~~~~~~~~~~~~a~-~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~-~~~~~l~~fi 344 (554)
|.+..+.....+..++ .+++.+.||++ .+++++++++++ .|+|++|++..+++ ..+.+. ++.+.|.+||
T Consensus 1 F~~~~~~~~~~f~~~A~~~~~~~~F~~~-----~~~~~~~~~~~~--~p~i~~~k~~~~~~--~~y~~~~~~~~~l~~fI 71 (184)
T PF13848_consen 1 FPDKDSELFEIFEEAAEKLKGDYQFGVT-----FNEELAKKYGIK--EPTIVVYKKFDEKP--VVYDGDKFTPEELKKFI 71 (184)
T ss_dssp ESTTTSHHHHHHHHHHHHHTTTSEEEEE-----E-HHHHHHCTCS--SSEEEEEECTTTSE--EEESSSTTSHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHhCcCCcEEEEE-----cHHHHHHHhCCC--CCcEEEeccCCCCc--eecccccCCHHHHHHHH
Confidence 3444555566666655 77888999999 588999999998 49999999855544 446665 8999999999
Q ss_pred hcCCCcccccccchhhhhhcCCCC-ceEEEEEcC-CCCcchhHHHHHHHHHhhccCCCCceEEEEEecccchHHHHhhCC
Q psy16770 345 DNNPYLTLPRISSQSMLDAVCPVK-KLCVVLFSE-DSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTS 422 (554)
Q Consensus 345 ~~~~~~~v~~lt~~~~~~~~c~~~-~lcvvl~~~-~~~~~~~~~~~l~~~a~~~~~~~~~v~F~~vd~~~q~~~~~~~~~ 422 (554)
..+++|+++++|..++....- .+ +..++++.. +....+...+.++++|++ +++ .+.|+|+|++..++++..|-.
T Consensus 72 ~~~~~P~v~~~t~~n~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~--~~~-~~~f~~~d~~~~~~~~~~~~i 147 (184)
T PF13848_consen 72 KKNSFPLVPELTPENFEKLFS-SPKPPVLILFDNKDNESTEAFKKELQDIAKK--FKG-KINFVYVDADDFPRLLKYFGI 147 (184)
T ss_dssp HHHSSTSCEEESTTHHHHHHS-TSSEEEEEEEETTTHHHHHHHHHHHHHHHHC--TTT-TSEEEEEETTTTHHHHHHTTT
T ss_pred HHhccccccccchhhHHHHhc-CCCceEEEEEEcCCchhHHHHHHHHHHHHHh--cCC-eEEEEEeehHHhHHHHHHcCC
Confidence 999999999999877655443 33 445566653 344557778899999999 875 599999999988888887721
Q ss_pred CCCCccccceEEEEEEecCCCeeEEEecCCCCCcccccchhhHHHHHHHHh
Q psy16770 423 PEDSSEISLHIAAMWRMDYKKIKYGWLLGDAVDDWKDYNTTKDRLDAGLRS 473 (554)
Q Consensus 423 ~~~~~~~~~~~~~v~~~~~~~~ky~~~~~~~~~~~~~~~~t~e~l~~fl~~ 473 (554)
. + .++|.++..+....+|.++..+ +.|.+.|.+||++
T Consensus 148 ~----~--~~~P~~vi~~~~~~~~~~~~~~--------~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 148 D----E--DDLPALVIFDSNKGKYYYLPEG--------EITPESIEKFLND 184 (184)
T ss_dssp T----T--SSSSEEEEEETTTSEEEE--SS--------CGCHHHHHHHHHH
T ss_pred C----C--ccCCEEEEEECCCCcEEcCCCC--------CCCHHHHHHHhcC
Confidence 1 1 3556555555444444443332 5789999999975
No 99
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.51 E-value=1.7e-14 Score=122.76 Aligned_cols=93 Identities=16% Similarity=0.299 Sum_probs=79.6
Q ss_pred ccccccccCCCCCCcEEEEEEcccccccccchHHH---HHHHHHhCCCCEEEEEEEecC----cHHHHHHhCCcCCCCcc
Q psy16770 135 WNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIF---KKLMDELSPLGVGFFTVHVHN----EQGLARRLGVGSQLPQI 207 (554)
Q Consensus 135 ~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~---~~~a~~l~~~~v~~~~Vd~~~----~~~l~~~~~v~~~~Pti 207 (554)
++|.+.+ ..+++++|.||++||++|+.+.|.+ .++++.+++ ++.++.||+++ ...++++++|.+ +||+
T Consensus 2 ~~~~~~~---~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~~-~Pti 76 (104)
T cd02953 2 AALAQAL---AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGVFG-PPTY 76 (104)
T ss_pred HHHHHHH---HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCCCC-CCEE
Confidence 3456666 4678999999999999999999988 678888876 69999999987 678999999997 9999
Q ss_pred eecc--CCeEEEEeCCcccHHHHHHHH
Q psy16770 208 ALLT--DGRTSFFKEPSFSVQKMVEFF 232 (554)
Q Consensus 208 ~~~~--~g~~~~y~~g~~~~~~i~~fl 232 (554)
++|. +|+......|..+.+.|.+++
T Consensus 77 ~~~~~~~g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 77 LFYGPGGEPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred EEECCCCCCCCcccccccCHHHHHHHh
Confidence 9997 788777676777889988876
No 100
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.51 E-value=3.2e-14 Score=122.73 Aligned_cols=87 Identities=17% Similarity=0.218 Sum_probs=76.9
Q ss_pred cccccc-ccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770 129 KLSTTH-WNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI 207 (554)
Q Consensus 129 ~~~Lt~-~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti 207 (554)
+.+++. ++|.+.| .++++++|.||+|||++|+.+.|.++++++++. ++.|.+||+++++.++++|+|.+ +||+
T Consensus 6 v~~i~~~~~~~~~i---~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~--~i~f~~Vd~~~~~~l~~~~~v~~-vPt~ 79 (113)
T cd02989 6 YREVSDEKEFFEIV---KSSERVVCHFYHPEFFRCKIMDKHLEILAKKHL--ETKFIKVNAEKAPFLVEKLNIKV-LPTV 79 (113)
T ss_pred eEEeCCHHHHHHHH---hCCCcEEEEEECCCCccHHHHHHHHHHHHHHcC--CCEEEEEEcccCHHHHHHCCCcc-CCEE
Confidence 555666 8898888 356899999999999999999999999999885 48999999999999999999997 9999
Q ss_pred eeccCCeEEEEeCC
Q psy16770 208 ALLTDGRTSFFKEP 221 (554)
Q Consensus 208 ~~~~~g~~~~y~~g 221 (554)
++|++|+.+....|
T Consensus 80 l~fk~G~~v~~~~g 93 (113)
T cd02989 80 ILFKNGKTVDRIVG 93 (113)
T ss_pred EEEECCEEEEEEEC
Confidence 99999988765544
No 101
>PHA03102 Small T antigen; Reviewed
Probab=99.50 E-value=2.5e-14 Score=127.53 Aligned_cols=66 Identities=29% Similarity=0.445 Sum_probs=61.1
Q ss_pred CCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770 19 LDPYETLGVPRTA--SLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD 87 (554)
Q Consensus 19 ~d~y~~Lgv~~~a--~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~ 87 (554)
...|++|||+++| |.++||+|||++++++|||+++ .+++|++|++||++|+|+.+|..||.+|..+
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg---~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~ 72 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGG---DEEKMKELNTLYKKFRESVKSLRDLDGEEDS 72 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCc---hhHHHHHHHHHHHHHhhHHHhccccccCCcc
Confidence 4578999999999 9999999999999999999974 3579999999999999999999999999765
No 102
>PTZ00051 thioredoxin; Provisional
Probab=99.48 E-value=6.8e-14 Score=117.48 Aligned_cols=89 Identities=19% Similarity=0.412 Sum_probs=77.1
Q ss_pred cccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCC
Q psy16770 134 HWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDG 213 (554)
Q Consensus 134 ~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g 213 (554)
.++|.+.+ +.+++++|.||++||++|+.+.|.++++++.+. ++.++.||++++..++++++|.+ +||+++|++|
T Consensus 8 ~~~~~~~~---~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~--~~~~~~vd~~~~~~~~~~~~v~~-~Pt~~~~~~g 81 (98)
T PTZ00051 8 QAEFESTL---SQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT--KMVFVKVDVDELSEVAEKENITS-MPTFKVFKNG 81 (98)
T ss_pred HHHHHHHH---hcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC--CcEEEEEECcchHHHHHHCCCce-eeEEEEEeCC
Confidence 45666666 467899999999999999999999999999875 48999999999999999999997 9999999999
Q ss_pred eEEEEeCCcccHHHHH
Q psy16770 214 RTSFFKEPSFSVQKMV 229 (554)
Q Consensus 214 ~~~~y~~g~~~~~~i~ 229 (554)
+......|. ..++|.
T Consensus 82 ~~~~~~~G~-~~~~~~ 96 (98)
T PTZ00051 82 SVVDTLLGA-NDEALK 96 (98)
T ss_pred eEEEEEeCC-CHHHhh
Confidence 988777675 556664
No 103
>KOG0722|consensus
Probab=99.48 E-value=2.7e-14 Score=133.17 Aligned_cols=70 Identities=40% Similarity=0.676 Sum_probs=66.2
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCC
Q psy16770 16 AVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGT 85 (554)
Q Consensus 16 ~~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~ 85 (554)
|...|.|+||||++.++.++|.+|||+||+++|||+++++++.+.|..|..||++|.|.+.|..||-.-.
T Consensus 30 CG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydyald 99 (329)
T KOG0722|consen 30 CGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYALD 99 (329)
T ss_pred ccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHHhc
Confidence 6679999999999999999999999999999999999999989999999999999999999999997543
No 104
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.47 E-value=1.5e-13 Score=123.47 Aligned_cols=98 Identities=23% Similarity=0.362 Sum_probs=81.8
Q ss_pred cccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCc--HHHHHHhCCcCCCCcceec-
Q psy16770 134 HWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE--QGLARRLGVGSQLPQIALL- 210 (554)
Q Consensus 134 ~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~--~~l~~~~~v~~~~Pti~~~- 210 (554)
...|+..+ ..+++++|.|||+||++|+.+.|.+.++++.+.+ ++.|+.||++.+ ..++++|+|.+ +||+++|
T Consensus 10 ~~~~~~a~---~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~-~~~~v~v~vd~~~~~~~~~~~~V~~-iPt~v~~~ 84 (142)
T cd02950 10 STPPEVAL---SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD-QVNFVMLNVDNPKWLPEIDRYRVDG-IPHFVFLD 84 (142)
T ss_pred cCCHHHHH---hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc-CeeEEEEEcCCcccHHHHHHcCCCC-CCEEEEEC
Confidence 34555555 4678999999999999999999999999999876 377888777654 58999999998 9999999
Q ss_pred cCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770 211 TDGRTSFFKEPSFSVQKMVEFFRLKL 236 (554)
Q Consensus 211 ~~g~~~~y~~g~~~~~~i~~fl~~~~ 236 (554)
++|+.+....|....+.|.+++.+.+
T Consensus 85 ~~G~~v~~~~G~~~~~~l~~~l~~l~ 110 (142)
T cd02950 85 REGNEEGQSIGLQPKQVLAQNLDALV 110 (142)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHHHHH
Confidence 58998877777777888988888775
No 105
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.47 E-value=1.8e-13 Score=114.88 Aligned_cols=87 Identities=22% Similarity=0.371 Sum_probs=78.6
Q ss_pred CCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCccc
Q psy16770 145 SYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFS 224 (554)
Q Consensus 145 ~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~ 224 (554)
..+++++|.||++||+.|+.+.|.++++++.+.+ ++.++.||++++++++++++|.+ +||+.+|++|+.+....|..+
T Consensus 11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d~~~~l~~~~~v~~-vPt~~i~~~g~~v~~~~g~~~ 88 (97)
T cd02949 11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDIDEDQEIAEAAGIMG-TPTVQFFKDKELVKEISGVKM 88 (97)
T ss_pred hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCCCHHHHHHCCCee-ccEEEEEECCeEEEEEeCCcc
Confidence 3678999999999999999999999999999976 59999999999999999999997 999999999998777767778
Q ss_pred HHHHHHHHH
Q psy16770 225 VQKMVEFFR 233 (554)
Q Consensus 225 ~~~i~~fl~ 233 (554)
.+.|.+|++
T Consensus 89 ~~~~~~~l~ 97 (97)
T cd02949 89 KSEYREFIE 97 (97)
T ss_pred HHHHHHhhC
Confidence 888888863
No 106
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.45 E-value=2.1e-13 Score=126.79 Aligned_cols=89 Identities=13% Similarity=0.144 Sum_probs=78.0
Q ss_pred cccccc-ccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770 129 KLSTTH-WNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI 207 (554)
Q Consensus 129 ~~~Lt~-~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti 207 (554)
+.+++. ++|.+.|...+.+.+++|.||+|||++|+.+.|.++++|+.+. .++|++||++.. .++.+|+|.+ +||+
T Consensus 64 v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~--~vkF~kVd~d~~-~l~~~f~v~~-vPTl 139 (175)
T cd02987 64 VYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP--AVKFCKIRASAT-GASDEFDTDA-LPAL 139 (175)
T ss_pred EEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC--CeEEEEEeccch-hhHHhCCCCC-CCEE
Confidence 667787 9999998644445699999999999999999999999999985 499999999988 8999999997 9999
Q ss_pred eeccCCeEEEEeCC
Q psy16770 208 ALLTDGRTSFFKEP 221 (554)
Q Consensus 208 ~~~~~g~~~~y~~g 221 (554)
++|++|+.+....|
T Consensus 140 llyk~G~~v~~~vG 153 (175)
T cd02987 140 LVYKGGELIGNFVR 153 (175)
T ss_pred EEEECCEEEEEEec
Confidence 99999998765543
No 107
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.45 E-value=1.4e-13 Score=116.24 Aligned_cols=82 Identities=16% Similarity=0.257 Sum_probs=71.7
Q ss_pred ccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCe
Q psy16770 135 WNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGR 214 (554)
Q Consensus 135 ~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~ 214 (554)
++|++.|... .+++++|.|+|+||++|+.+.|.++++|+++++. +.|.+||+++.++++++|+|.. .||+++|++|+
T Consensus 3 ~~~d~~i~~~-~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDVDev~dva~~y~I~a-mPtfvffkngk 79 (114)
T cd02986 3 KEVDQAIKST-AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDVDKVPVYTQYFDISY-IPSTIFFFNGQ 79 (114)
T ss_pred HHHHHHHHhc-CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc-eEEEEEeccccHHHHHhcCcee-CcEEEEEECCc
Confidence 4566666533 5889999999999999999999999999999754 9999999999999999999997 99999999998
Q ss_pred EEEEe
Q psy16770 215 TSFFK 219 (554)
Q Consensus 215 ~~~y~ 219 (554)
.+.-.
T Consensus 80 h~~~d 84 (114)
T cd02986 80 HMKVD 84 (114)
T ss_pred EEEEe
Confidence 75443
No 108
>PTZ00102 disulphide isomerase; Provisional
Probab=99.42 E-value=2.9e-13 Score=146.67 Aligned_cols=109 Identities=15% Similarity=0.254 Sum_probs=93.9
Q ss_pred ccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCC-CEEEEEEEecCcHHHHHHhCCcCCCC
Q psy16770 127 FHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPL-GVGFFTVHVHNEQGLARRLGVGSQLP 205 (554)
Q Consensus 127 ~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~-~v~~~~Vd~~~~~~l~~~~~v~~~~P 205 (554)
..+..|+.++|++.|. ..+++++|.||||||++|+.+.|.|+++++.+++. .+.++++||+.+..+|+++++++ +|
T Consensus 357 ~~v~~l~~~~f~~~v~--~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~-~P 433 (477)
T PTZ00102 357 GPVKVVVGNTFEEIVF--KSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSA-FP 433 (477)
T ss_pred CCeEEecccchHHHHh--cCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcc-cC
Confidence 3577889999999876 45789999999999999999999999999998753 48999999999999999999997 99
Q ss_pred cceeccCCeE--EEEeCCcccHHHHHHHHHHhCCCC
Q psy16770 206 QIALLTDGRT--SFFKEPSFSVQKMVEFFRLKLPYK 239 (554)
Q Consensus 206 ti~~~~~g~~--~~y~~g~~~~~~i~~fl~~~~~~~ 239 (554)
|+++|++|.. ..|. |.++.++|.+|+.+....+
T Consensus 434 t~~~~~~~~~~~~~~~-G~~~~~~l~~~i~~~~~~~ 468 (477)
T PTZ00102 434 TILFVKAGERTPIPYE-GERTVEGFKEFVNKHATNP 468 (477)
T ss_pred eEEEEECCCcceeEec-CcCCHHHHHHHHHHcCCCC
Confidence 9999987754 3455 5568999999999987643
No 109
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.41 E-value=8.3e-13 Score=108.45 Aligned_cols=91 Identities=26% Similarity=0.535 Sum_probs=77.9
Q ss_pred cccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeE
Q psy16770 136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRT 215 (554)
Q Consensus 136 ~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~ 215 (554)
+|++.+. .+++++|.||++||++|..+.|.++++++. .+ ++.++.+|++.+..+++++++.+ +||++++.+|+.
T Consensus 2 ~~~~~~~---~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~-~~~~~~i~~~~~~~~~~~~~v~~-~P~~~~~~~g~~ 75 (93)
T cd02947 2 EFEELIK---SAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YP-KVKFVKVDVDENPELAEEYGVRS-IPTFLFFKNGKE 75 (93)
T ss_pred chHHHHh---cCCcEEEEEECCCChhHHHhhHHHHHHHHH-CC-CceEEEEECCCChhHHHhcCccc-ccEEEEEECCEE
Confidence 4566663 348999999999999999999999999988 33 69999999999999999999997 999999999987
Q ss_pred EEEeCCcccHHHHHHHH
Q psy16770 216 SFFKEPSFSVQKMVEFF 232 (554)
Q Consensus 216 ~~y~~g~~~~~~i~~fl 232 (554)
+....|..+.+.|.+|+
T Consensus 76 ~~~~~g~~~~~~l~~~i 92 (93)
T cd02947 76 VDRVVGADPKEELEEFL 92 (93)
T ss_pred EEEEecCCCHHHHHHHh
Confidence 65555656778888876
No 110
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=99.41 E-value=1.3e-12 Score=115.29 Aligned_cols=123 Identities=20% Similarity=0.334 Sum_probs=95.8
Q ss_pred cccccccchhhhhhcCCCCceEEEEEcCCC-----CcchhHHHHHHHHHhhccCCCCceEEEEEecccchHHHHhhCCCC
Q psy16770 350 LTLPRISSQSMLDAVCPVKKLCVVLFSEDS-----PEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPE 424 (554)
Q Consensus 350 ~~v~~lt~~~~~~~~c~~~~lcvvl~~~~~-----~~~~~~~~~l~~~a~~~~~~~~~v~F~~vd~~~q~~~~~~~~~~~ 424 (554)
|.+.+||+++.++..|..+++|||.|.+.. ++.++..+.|+++|++ |+++++.|+|+|++++..+.+.|-..
T Consensus 2 ~~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~--~kgk~i~Fv~vd~~~~~~~~~~fgl~- 78 (130)
T cd02983 2 PEIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEK--FKKKPWGWLWTEAGAQLDLEEALNIG- 78 (130)
T ss_pred CceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHH--hcCCcEEEEEEeCcccHHHHHHcCCC-
Confidence 568899999999999977799999999753 2345678899999999 99877999999999999999988211
Q ss_pred CCccccceEEEEEEecCCCeeEEEecCCCCCcccccchhhHHHHHHHHhhhcCCCCCccccccccc
Q psy16770 425 DSSEISLHIAAMWRMDYKKIKYGWLLGDAVDDWKDYNTTKDRLDAGLRSLVNDPYNNLLYDTALKE 490 (554)
Q Consensus 425 ~~~~~~~~~~~v~~~~~~~~ky~~~~~~~~~~~~~~~~t~e~l~~fl~~~~~g~~~~~~~~~~lp~ 490 (554)
. .++|++.+.+.++.||..+++ ++|.++|.+|+++++.|+.. ...-..+|.
T Consensus 79 --~---~~~P~v~i~~~~~~KY~~~~~---------~~t~e~i~~Fv~~~l~Gkl~-~~~~~~~p~ 129 (130)
T cd02983 79 --G---FGYPAMVAINFRKMKFATLKG---------SFSEDGINEFLRELSYGRGP-TLPVNGLPK 129 (130)
T ss_pred --c---cCCCEEEEEecccCccccccC---------ccCHHHHHHHHHHHHcCCcc-cccCCCCCC
Confidence 1 256666555655559987666 47999999999999999986 333224543
No 111
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=5.3e-13 Score=129.47 Aligned_cols=68 Identities=54% Similarity=0.916 Sum_probs=63.6
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChh--HHHHHHHHHHHHHHcCChHHHHhhhccC
Q psy16770 17 VSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPT--AQEKFLQLTEAYNILSDAERRKQYDLFG 84 (554)
Q Consensus 17 ~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~--~~~~~~~i~~Ay~~L~~~~~r~~yd~~~ 84 (554)
...|+|+||||+++|+..||++|||++++++|||+++... +.++|..|++||++|+|+.+|..||..+
T Consensus 4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 4579999999999999999999999999999999998543 8999999999999999999999999974
No 112
>KOG0908|consensus
Probab=99.37 E-value=9.2e-13 Score=123.36 Aligned_cols=102 Identities=20% Similarity=0.368 Sum_probs=89.6
Q ss_pred ccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccC
Q psy16770 133 THWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTD 212 (554)
Q Consensus 133 t~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~ 212 (554)
++++|+..+.. ...+.++|.|+|.|||+|++++|.|..++..+. +..|.+||+++.+.++..+||+. .||+++|+|
T Consensus 8 ~d~df~~~ls~-ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp--~aVFlkVdVd~c~~taa~~gV~a-mPTFiff~n 83 (288)
T KOG0908|consen 8 SDSDFQRELSA-AGGKLVVVDFTASWCGPCKRIAPIFSDLANKYP--GAVFLKVDVDECRGTAATNGVNA-MPTFIFFRN 83 (288)
T ss_pred CcHHHHHhhhc-cCceEEEEEEEecccchHHhhhhHHHHhhhhCc--ccEEEEEeHHHhhchhhhcCccc-CceEEEEec
Confidence 46778877743 356799999999999999999999999999996 47999999999999999999997 999999999
Q ss_pred CeEEEEeCCcccHHHHHHHHHHhCCCC
Q psy16770 213 GRTSFFKEPSFSVQKMVEFFRLKLPYK 239 (554)
Q Consensus 213 g~~~~y~~g~~~~~~i~~fl~~~~~~~ 239 (554)
|..+....|. ++..|.+-+.+.+..+
T Consensus 84 g~kid~~qGA-d~~gLe~kv~~~~sts 109 (288)
T KOG0908|consen 84 GVKIDQIQGA-DASGLEEKVAKYASTS 109 (288)
T ss_pred CeEeeeecCC-CHHHHHHHHHHHhccC
Confidence 9988888775 8899999998886544
No 113
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.36 E-value=1.1e-12 Score=120.81 Aligned_cols=66 Identities=26% Similarity=0.451 Sum_probs=58.0
Q ss_pred CCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCh------hHHHHHHHHHHHHHHcCChHHHHhhhccC
Q psy16770 19 LDPYETLGVPRT--ASLQEIRKNYKRLVVEWHPDKNNDP------TAQEKFLQLTEAYNILSDAERRKQYDLFG 84 (554)
Q Consensus 19 ~d~y~~Lgv~~~--a~~~~ik~ay~~l~~~~hPd~~~~~------~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~ 84 (554)
.|||++|||+++ ++..+||++||++++++|||+..+. .+.+++..||+||++|+||.+|+.|+...
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l 74 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSL 74 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHh
Confidence 489999999996 6789999999999999999997532 14578999999999999999999999643
No 114
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.35 E-value=1.4e-12 Score=119.33 Aligned_cols=66 Identities=30% Similarity=0.494 Sum_probs=57.8
Q ss_pred CCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCChh----HHHHHHHHHHHHHHcCChHHHHhhhccC
Q psy16770 19 LDPYETLGVPRT--ASLQEIRKNYKRLVVEWHPDKNNDPT----AQEKFLQLTEAYNILSDAERRKQYDLFG 84 (554)
Q Consensus 19 ~d~y~~Lgv~~~--a~~~~ik~ay~~l~~~~hPd~~~~~~----~~~~~~~i~~Ay~~L~~~~~r~~yd~~~ 84 (554)
.|||++|||+++ ++..+|+++||+|++++|||++.++. +.+.+..|++||++|+||.+|+.|+...
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l 73 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLL 73 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHc
Confidence 589999999997 78999999999999999999986432 2345789999999999999999998754
No 115
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.35 E-value=1.8e-12 Score=109.73 Aligned_cols=87 Identities=21% Similarity=0.329 Sum_probs=78.2
Q ss_pred CCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCc--CCCCcceeccC--CeEEEEeCCc
Q psy16770 147 TTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVG--SQLPQIALLTD--GRTSFFKEPS 222 (554)
Q Consensus 147 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~--~~~Pti~~~~~--g~~~~y~~g~ 222 (554)
++++++.|+++||++|+.+.|.++++|+++++ .+.|+.||+++++.+++.+|+. + +|+++++++ |+...+.++.
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~-~v~f~~vd~~~~~~~~~~~~i~~~~-~P~~~~~~~~~~~k~~~~~~~ 89 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKG-KLLFVVVDADDFGRHLEYFGLKEED-LPVIAIINLSDGKKYLMPEEE 89 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCC-eEEEEEEchHhhHHHHHHcCCChhh-CCEEEEEecccccccCCCccc
Confidence 57999999999999999999999999999997 4999999999999999999999 8 999999987 6666666665
Q ss_pred ccHHHHHHHHHHh
Q psy16770 223 FSVQKMVEFFRLK 235 (554)
Q Consensus 223 ~~~~~i~~fl~~~ 235 (554)
.+.++|.+|+.+.
T Consensus 90 ~~~~~l~~fi~~~ 102 (103)
T cd02982 90 LTAESLEEFVEDF 102 (103)
T ss_pred cCHHHHHHHHHhh
Confidence 5889999999764
No 116
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.35 E-value=1.5e-12 Score=122.64 Aligned_cols=87 Identities=13% Similarity=0.114 Sum_probs=75.4
Q ss_pred ccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcce
Q psy16770 129 KLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIA 208 (554)
Q Consensus 129 ~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~ 208 (554)
+..+|..+|...|...+.+.+++|.||++||++|+.+.|.++++|+.+. .++|++||++.. +.+|++++ +||++
T Consensus 84 v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~--~vkFvkI~ad~~---~~~~~i~~-lPTll 157 (192)
T cd02988 84 VYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP--DTKFVKIISTQC---IPNYPDKN-LPTIL 157 (192)
T ss_pred EEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC--CCEEEEEEhHHh---HhhCCCCC-CCEEE
Confidence 7778999999888655455789999999999999999999999999985 489999999753 68999997 99999
Q ss_pred eccCCeEEEEeCC
Q psy16770 209 LLTDGRTSFFKEP 221 (554)
Q Consensus 209 ~~~~g~~~~y~~g 221 (554)
+|++|+.+...-|
T Consensus 158 iyk~G~~v~~ivG 170 (192)
T cd02988 158 VYRNGDIVKQFIG 170 (192)
T ss_pred EEECCEEEEEEeC
Confidence 9999998765544
No 117
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.34 E-value=2.3e-12 Score=111.20 Aligned_cols=93 Identities=13% Similarity=0.194 Sum_probs=75.9
Q ss_pred ccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeE-
Q psy16770 137 FEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRT- 215 (554)
Q Consensus 137 F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~- 215 (554)
|.+.+ ..+..++|.||++||++|+.+.|.++++++.. + ++.+..||+++++.++++|+|.+ +||+++|++|..
T Consensus 15 ~~~~l---~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~-~i~~~~vd~d~~~~l~~~~~v~~-vPt~~i~~~g~~~ 88 (113)
T cd02975 15 FFKEM---KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-D-KLKLEIYDFDEDKEKAEKYGVER-VPTTIFLQDGGKD 88 (113)
T ss_pred HHHHh---CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C-ceEEEEEeCCcCHHHHHHcCCCc-CCEEEEEeCCeec
Confidence 54544 34567889999999999999999999999886 4 48999999999999999999997 999999987643
Q ss_pred --EEEeCCcccHHHHHHHHHHhC
Q psy16770 216 --SFFKEPSFSVQKMVEFFRLKL 236 (554)
Q Consensus 216 --~~y~~g~~~~~~i~~fl~~~~ 236 (554)
+.+.| ..+..++.+|+...+
T Consensus 89 ~~~~~~G-~~~~~el~~~i~~i~ 110 (113)
T cd02975 89 GGIRYYG-LPAGYEFASLIEDIV 110 (113)
T ss_pred ceEEEEe-cCchHHHHHHHHHHH
Confidence 34554 456788888887543
No 118
>KOG0720|consensus
Probab=99.33 E-value=9.6e-13 Score=133.15 Aligned_cols=69 Identities=39% Similarity=0.669 Sum_probs=66.1
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCCC
Q psy16770 18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTT 86 (554)
Q Consensus 18 ~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~ 86 (554)
..|+|.+|||++++|+++|||.||++|...|||||..+.|+|.|..+..||++|+|+++|+.||.....
T Consensus 234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~k 302 (490)
T KOG0720|consen 234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLELKK 302 (490)
T ss_pred CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999999999986544
No 119
>PTZ00062 glutaredoxin; Provisional
Probab=99.32 E-value=2.1e-11 Score=115.25 Aligned_cols=162 Identities=12% Similarity=0.085 Sum_probs=109.8
Q ss_pred ccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccC
Q psy16770 133 THWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTD 212 (554)
Q Consensus 133 t~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~ 212 (554)
+.++|.+.+. +..+..+++|+|+||+.|+.+.|.+.++++++. .+.|+.||++ |+|.+ +||+++|++
T Consensus 5 ~~ee~~~~i~--~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~--~~~F~~V~~d--------~~V~~-vPtfv~~~~ 71 (204)
T PTZ00062 5 KKEEKDKLIE--SNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFP--SLEFYVVNLA--------DANNE-YGVFEFYQN 71 (204)
T ss_pred CHHHHHHHHh--cCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCC--CcEEEEEccc--------cCccc-ceEEEEEEC
Confidence 4566777773 234788999999999999999999999999985 4999999987 99997 999999999
Q ss_pred CeEEEEeCCcccHHHHHHHHHHhCCCCccccCCcccHHHHHhhhhcCCceEEEEEecC--CchhHHHHHH--hhccCCce
Q psy16770 213 GRTSFFKEPSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWREDNKVHALLFQRS--LPVRLRYLIN--AFKHRTTI 288 (554)
Q Consensus 213 g~~~~y~~g~~~~~~i~~fl~~~~~~~~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~--~~~~~~~~~~--a~~~~~~v 288 (554)
|+.+....|. ++..|.+++.+....... +.+.+++.... ...+ |++|.+. ..+...+-.. ..--...+
T Consensus 72 g~~i~r~~G~-~~~~~~~~~~~~~~~~~~-----~~~~~~v~~li-~~~~-Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i 143 (204)
T PTZ00062 72 SQLINSLEGC-NTSTLVSFIRGWAQKGSS-----EDTVEKIERLI-RNHK-ILLFMKGSKTFPFCRFSNAVVNMLNSSGV 143 (204)
T ss_pred CEEEeeeeCC-CHHHHHHHHHHHcCCCCH-----HHHHHHHHHHH-hcCC-EEEEEccCCCCCCChhHHHHHHHHHHcCC
Confidence 9999888776 789999999998775522 23445554431 2333 4444432 2222222211 11112367
Q ss_pred EEEEEEccCCCChhHHhHh----CCCCCCceEEE
Q psy16770 289 VFGVIVYDQEDSSSVFQRF----KVPGDKDSLLI 318 (554)
Q Consensus 289 ~Fg~v~~~~~~~~~l~~k~----~i~~~~Ptlvv 318 (554)
.|..++.. .++++.+.+ +-.. .|.|.+
T Consensus 144 ~y~~~DI~--~d~~~~~~l~~~sg~~T-vPqVfI 174 (204)
T PTZ00062 144 KYETYNIF--EDPDLREELKVYSNWPT-YPQLYV 174 (204)
T ss_pred CEEEEEcC--CCHHHHHHHHHHhCCCC-CCeEEE
Confidence 78888876 455554433 3233 566554
No 120
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.32 E-value=3.6e-12 Score=111.31 Aligned_cols=99 Identities=13% Similarity=0.179 Sum_probs=79.4
Q ss_pred cccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcH-----------HHHH
Q psy16770 128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQ-----------GLAR 196 (554)
Q Consensus 128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~-----------~l~~ 196 (554)
....+|.++|.+.+ .+++.++|.|+++||++|+.+.|.+++++++. ++.+..||.+.+. ++.+
T Consensus 7 ~~~~it~~~~~~~i---~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~---~~~~y~vdvd~~~~~~~~~~~~~~~~~~ 80 (122)
T TIGR01295 7 GLEVTTVVRALEAL---DKKETATFFIGRKTCPYCRKFSGTLSGVVAQT---KAPIYYIDSENNGSFEMSSLNDLTAFRS 80 (122)
T ss_pred cceecCHHHHHHHH---HcCCcEEEEEECCCChhHHHHhHHHHHHHHhc---CCcEEEEECCCccCcCcccHHHHHHHHH
Confidence 35567888999988 46778999999999999999999999999983 3678888887543 5556
Q ss_pred HhC----CcCCCCcceeccCCeEEEEe-CCcccHHHHHHHHH
Q psy16770 197 RLG----VGSQLPQIALLTDGRTSFFK-EPSFSVQKMVEFFR 233 (554)
Q Consensus 197 ~~~----v~~~~Pti~~~~~g~~~~y~-~g~~~~~~i~~fl~ 233 (554)
+++ |.+ +||+++|++|+.+... |+..+.++|.+|+.
T Consensus 81 ~~~i~~~i~~-~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 81 RFGIPTSFMG-TPTFVHITDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred HcCCcccCCC-CCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence 654 665 9999999999887766 44667889988863
No 121
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.31 E-value=4e-12 Score=116.82 Aligned_cols=68 Identities=28% Similarity=0.399 Sum_probs=59.9
Q ss_pred CCCCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCh------hHHHHHHHHHHHHHHcCChHHHHhhhccC
Q psy16770 17 VSLDPYETLGVPRT--ASLQEIRKNYKRLVVEWHPDKNNDP------TAQEKFLQLTEAYNILSDAERRKQYDLFG 84 (554)
Q Consensus 17 ~~~d~y~~Lgv~~~--a~~~~ik~ay~~l~~~~hPd~~~~~------~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~ 84 (554)
...|||++||++++ .+..+|+++||+|++++|||++.+. .+.+.+..||+||++|+||.+|+.|+...
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l 77 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLAL 77 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHh
Confidence 56899999999997 5689999999999999999998642 25567999999999999999999999744
No 122
>KOG0550|consensus
Probab=99.29 E-value=3.9e-12 Score=127.36 Aligned_cols=75 Identities=40% Similarity=0.588 Sum_probs=67.4
Q ss_pred HHhhccCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-C-hhHHHHHHHHHHHHHHcCChHHHHhhhccC
Q psy16770 10 VLFINCAVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-D-PTAQEKFLQLTEAYNILSDAERRKQYDLFG 84 (554)
Q Consensus 10 ~~~~~~~~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~-~-~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~ 84 (554)
..-+.-++..|+|+|||+++.++..|||+|||++++.||||++. + .+++.+|.++-+||.||+||.+|.+||..-
T Consensus 364 ~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~ 440 (486)
T KOG0550|consen 364 QLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQ 440 (486)
T ss_pred HHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccccc
Confidence 33445678899999999999999999999999999999999986 3 578899999999999999999999999843
No 123
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.29 E-value=5.8e-12 Score=116.35 Aligned_cols=67 Identities=24% Similarity=0.395 Sum_probs=57.6
Q ss_pred CCCCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCC-hhH-----HHHHHHHHHHHHHcCChHHHHhhhcc
Q psy16770 17 VSLDPYETLGVPRT--ASLQEIRKNYKRLVVEWHPDKNND-PTA-----QEKFLQLTEAYNILSDAERRKQYDLF 83 (554)
Q Consensus 17 ~~~d~y~~Lgv~~~--a~~~~ik~ay~~l~~~~hPd~~~~-~~~-----~~~~~~i~~Ay~~L~~~~~r~~yd~~ 83 (554)
...|||++|||+++ ++..+|+++||+|++++|||++++ +.+ .+.+..||+||++|+||.+|..|+..
T Consensus 4 ~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~ 78 (176)
T PRK03578 4 LKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLH 78 (176)
T ss_pred CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHH
Confidence 45899999999995 678999999999999999999863 332 33458999999999999999999963
No 124
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.28 E-value=2.3e-11 Score=98.39 Aligned_cols=80 Identities=20% Similarity=0.348 Sum_probs=68.8
Q ss_pred EEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCcccHHHHH
Q psy16770 150 HLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMV 229 (554)
Q Consensus 150 ~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~~i~ 229 (554)
.+..||++||++|+.+.|.+++++++++. .+.+..||+++++++++++|+.+ +||+++ +|+. .+.| ..+.+.|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~-vPt~~~--~g~~-~~~G-~~~~~~l~ 75 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD-AVEVEYINVMENPQKAMEYGIMA-VPAIVI--NGDV-EFIG-APTKEELV 75 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC-ceEEEEEeCccCHHHHHHcCCcc-CCEEEE--CCEE-EEec-CCCHHHHH
Confidence 46789999999999999999999999875 49999999999999999999997 999986 7763 4554 45789999
Q ss_pred HHHHHh
Q psy16770 230 EFFRLK 235 (554)
Q Consensus 230 ~fl~~~ 235 (554)
+++.+.
T Consensus 76 ~~l~~~ 81 (82)
T TIGR00411 76 EAIKKR 81 (82)
T ss_pred HHHHhh
Confidence 988764
No 125
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.24 E-value=1.9e-11 Score=107.51 Aligned_cols=91 Identities=14% Similarity=0.250 Sum_probs=74.2
Q ss_pred CCC-CcEEEEEEcccccccccchHHHH---HHHHHhCCCCEEEEEEEecCc-------------HHHHHHhCCcCCCCcc
Q psy16770 145 SYT-TPHLILFYSDWCFACLQVEPIFK---KLMDELSPLGVGFFTVHVHNE-------------QGLARRLGVGSQLPQI 207 (554)
Q Consensus 145 ~~~-~~~lV~Fya~wC~~C~~l~p~~~---~~a~~l~~~~v~~~~Vd~~~~-------------~~l~~~~~v~~~~Pti 207 (554)
..+ ++++|.||++||++|+++.|.+. .+.+.+++ ++.+..||.+.+ ..++.+|+|.+ +||+
T Consensus 11 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~-~Pt~ 88 (125)
T cd02951 11 ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA-HFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRF-TPTV 88 (125)
T ss_pred HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh-heEEEEEEccCCceeeccCCCCccHHHHHHHcCCcc-ccEE
Confidence 356 89999999999999999999885 55566654 588999998864 78999999997 9999
Q ss_pred eeccC--CeEEEEeCCcccHHHHHHHHHHhCC
Q psy16770 208 ALLTD--GRTSFFKEPSFSVQKMVEFFRLKLP 237 (554)
Q Consensus 208 ~~~~~--g~~~~y~~g~~~~~~i~~fl~~~~~ 237 (554)
++|.+ |+.+....|..+.+.+.+++...+.
T Consensus 89 ~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~ 120 (125)
T cd02951 89 IFLDPEGGKEIARLPGYLPPDEFLAYLEYVQE 120 (125)
T ss_pred EEEcCCCCceeEEecCCCCHHHHHHHHHHHHh
Confidence 99965 5777777676788888888876543
No 126
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.23 E-value=1.3e-11 Score=133.09 Aligned_cols=107 Identities=17% Similarity=0.339 Sum_probs=90.6
Q ss_pred ccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCC--CEEEEEEEecCcHHHHHHhCCcCCC
Q psy16770 127 FHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPL--GVGFFTVHVHNEQGLARRLGVGSQL 204 (554)
Q Consensus 127 ~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~--~v~~~~Vd~~~~~~l~~~~~v~~~~ 204 (554)
..+..|+.++|.+.|. +.+++++|.|||+||++|+.+.|.|+++++.+++. ++.++++||+.+.-. . ++|.+ +
T Consensus 346 ~~v~~l~~~~f~~~v~--~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~~~-~-~~i~~-~ 420 (462)
T TIGR01130 346 GPVKVLVGKNFDEIVL--DETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATANDVP-P-FEVEG-F 420 (462)
T ss_pred CccEEeeCcCHHHHhc--cCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCccC-C-CCccc-c
Confidence 3567899999999986 45789999999999999999999999999999872 599999999987533 3 99997 9
Q ss_pred CcceeccCCeE---EEEeCCcccHHHHHHHHHHhCCCC
Q psy16770 205 PQIALLTDGRT---SFFKEPSFSVQKMVEFFRLKLPYK 239 (554)
Q Consensus 205 Pti~~~~~g~~---~~y~~g~~~~~~i~~fl~~~~~~~ 239 (554)
||+++|++|.. ..+.|+ ++.++|++|+.+....+
T Consensus 421 Pt~~~~~~~~~~~~~~~~g~-~~~~~l~~~l~~~~~~~ 457 (462)
T TIGR01130 421 PTIKFVPAGKKSEPVPYDGD-RTLEDFSKFIAKHATFP 457 (462)
T ss_pred CEEEEEeCCCCcCceEecCc-CCHHHHHHHHHhcCCCC
Confidence 99999987754 466654 58899999999887554
No 127
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.23 E-value=7.8e-12 Score=105.61 Aligned_cols=53 Identities=28% Similarity=0.402 Sum_probs=48.3
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcC
Q psy16770 17 VSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILS 72 (554)
Q Consensus 17 ~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~ 72 (554)
...++|+||||++++|.+|||++||+|++++|||++ ++.+.|.+|++||++|.
T Consensus 63 s~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg---Gs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 63 SKSEAYKILNISPTASKERIREAHKQLMLRNHPDNG---GSTYIASKVNEAKDLLL 115 (116)
T ss_pred CHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHHHh
Confidence 347999999999999999999999999999999985 45678999999999985
No 128
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.18 E-value=3.2e-11 Score=104.10 Aligned_cols=81 Identities=19% Similarity=0.379 Sum_probs=68.1
Q ss_pred cccccccccCCCCCCcEEEEEEc-------ccccccccchHHHHHHHHHhCCCCEEEEEEEecC-------cHHHHHHhC
Q psy16770 134 HWNFEKNYIPKSYTTPHLILFYS-------DWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN-------EQGLARRLG 199 (554)
Q Consensus 134 ~~~F~~~v~~~~~~~~~lV~Fya-------~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~-------~~~l~~~~~ 199 (554)
.++|.+.|.. ..+++++|.||| +||++|+.+.|.+++++.++.+ ++.|.+||+++ +..++.+++
T Consensus 9 ~~~f~~~i~~-~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~-~v~fv~Vdvd~~~~w~d~~~~~~~~~~ 86 (119)
T cd02952 9 YEEFLKLLKS-HEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE-DCVFIYCDVGDRPYWRDPNNPFRTDPK 86 (119)
T ss_pred HHHHHHHHHh-cCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC-CCEEEEEEcCCcccccCcchhhHhccC
Confidence 4566677742 236799999999 9999999999999999999975 48999999976 469999999
Q ss_pred Cc-CCCCcceeccCCeEEE
Q psy16770 200 VG-SQLPQIALLTDGRTSF 217 (554)
Q Consensus 200 v~-~~~Pti~~~~~g~~~~ 217 (554)
|. + +||+++|++|+.+.
T Consensus 87 I~~~-iPT~~~~~~~~~l~ 104 (119)
T cd02952 87 LTTG-VPTLLRWKTPQRLV 104 (119)
T ss_pred cccC-CCEEEEEcCCceec
Confidence 98 9 99999998775443
No 129
>KOG0714|consensus
Probab=99.14 E-value=4.9e-11 Score=120.84 Aligned_cols=69 Identities=45% Similarity=0.868 Sum_probs=64.3
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh--hHHHHHHHHHHHHHHcCChHHHHhhhccCCC
Q psy16770 18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDP--TAQEKFLQLTEAYNILSDAERRKQYDLFGTT 86 (554)
Q Consensus 18 ~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~--~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~ 86 (554)
..|+|++|||.+.|+.++|++|||+++++||||+++.+ .+.++|.+|.+||++|+|+.+|..||.+|..
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~ 72 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEE 72 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCcc
Confidence 46999999999999999999999999999999998876 5667899999999999999999999999983
No 130
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.13 E-value=4.1e-11 Score=118.61 Aligned_cols=58 Identities=34% Similarity=0.580 Sum_probs=51.8
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--------hhHHHHHHHHHHHHHHcCCh
Q psy16770 17 VSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNND--------PTAQEKFLQLTEAYNILSDA 74 (554)
Q Consensus 17 ~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~--------~~~~~~~~~i~~Ay~~L~~~ 74 (554)
...|+|++|||++++|.++||+|||+|+++||||+..+ +.+.++|++|++||++|+..
T Consensus 198 ~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~ 263 (267)
T PRK09430 198 TLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ 263 (267)
T ss_pred cHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence 34799999999999999999999999999999999642 34789999999999999863
No 131
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.12 E-value=1.1e-10 Score=117.39 Aligned_cols=73 Identities=38% Similarity=0.738 Sum_probs=66.1
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC------hhHHHHHHHHHHHHHHcCChHHHHhhhccCCCCC
Q psy16770 16 AVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNND------PTAQEKFLQLTEAYNILSDAERRKQYDLFGTTDG 88 (554)
Q Consensus 16 ~~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~------~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~~ 88 (554)
....|||||||++.+++..+||++||+|+.++||||.+. ..-++.+..|++||+.|+|..+|..|-.+|..+.
T Consensus 95 ~~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~ 173 (610)
T COG5407 95 RRGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDS 173 (610)
T ss_pred HcCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCC
Confidence 456899999999999999999999999999999999864 3457889999999999999999999999998653
No 132
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.10 E-value=3.1e-10 Score=90.51 Aligned_cols=74 Identities=26% Similarity=0.340 Sum_probs=59.7
Q ss_pred EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCcccHHHHHH
Q psy16770 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVE 230 (554)
Q Consensus 151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~~i~~ 230 (554)
-|.||++||++|+.+.|.++++++++.. .+.+.+|| +.+.+.++|+.+ .||+++ +|+.. ..|...+.+.|.+
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~-~~~~~~v~---~~~~a~~~~v~~-vPti~i--~G~~~-~~G~~~~~~~l~~ 73 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGI-DAEFEKVT---DMNEILEAGVTA-TPGVAV--DGELV-IMGKIPSKEEIKE 73 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCC-CeEEEEeC---CHHHHHHcCCCc-CCEEEE--CCEEE-EEeccCCHHHHHH
Confidence 3789999999999999999999999865 48888887 455688999997 999999 88776 5443335577776
Q ss_pred HH
Q psy16770 231 FF 232 (554)
Q Consensus 231 fl 232 (554)
++
T Consensus 74 ~l 75 (76)
T TIGR00412 74 IL 75 (76)
T ss_pred Hh
Confidence 65
No 133
>PHA02125 thioredoxin-like protein
Probab=99.06 E-value=5.4e-10 Score=88.89 Aligned_cols=69 Identities=22% Similarity=0.420 Sum_probs=54.1
Q ss_pred EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeEEEE-eCCcccHHHHH
Q psy16770 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFF-KEPSFSVQKMV 229 (554)
Q Consensus 151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y-~~g~~~~~~i~ 229 (554)
++.||++||++|+.+.|.++++. +.++.||++++.+++++|+|.+ +||++ +|+.+.. .|...+..+|.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-------~~~~~vd~~~~~~l~~~~~v~~-~PT~~---~g~~~~~~~G~~~~~~~l~ 70 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-------YTYVDVDTDEGVELTAKHHIRS-LPTLV---NTSTLDRFTGVPRNVAELK 70 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-------heEEeeeCCCCHHHHHHcCCce-eCeEE---CCEEEEEEeCCCCcHHHHH
Confidence 68999999999999999987542 5688999999999999999997 99987 5665544 34333444544
Q ss_pred H
Q psy16770 230 E 230 (554)
Q Consensus 230 ~ 230 (554)
+
T Consensus 71 ~ 71 (75)
T PHA02125 71 E 71 (75)
T ss_pred H
Confidence 3
No 134
>PHA02624 large T antigen; Provisional
Probab=99.05 E-value=1.4e-10 Score=123.66 Aligned_cols=62 Identities=32% Similarity=0.521 Sum_probs=57.4
Q ss_pred CCCCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhh
Q psy16770 17 VSLDPYETLGVPRTA--SLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYD 81 (554)
Q Consensus 17 ~~~d~y~~Lgv~~~a--~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd 81 (554)
...++|++|||+++| +.++||+|||++|+++|||+++ ++++|++|++||++|+|+.+|.+|.
T Consensus 9 e~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgG---deekfk~Ln~AYevL~d~~k~~r~~ 72 (647)
T PHA02624 9 ESKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGG---DEEKMKRLNSLYKKLQEGVKSARQS 72 (647)
T ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC---cHHHHHHHHHHHHHHhcHHHhhhcc
Confidence 356899999999999 9999999999999999999964 4689999999999999999999993
No 135
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.02 E-value=2.2e-08 Score=93.83 Aligned_cols=167 Identities=17% Similarity=0.272 Sum_probs=125.8
Q ss_pred chHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccC--CeEEEEeCCcccHHHHHHHHHHhCCCCccc
Q psy16770 165 VEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTD--GRTSFFKEPSFSVQKMVEFFRLKLPYKLIV 242 (554)
Q Consensus 165 l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~--g~~~~y~~g~~~~~~i~~fl~~~~~~~~v~ 242 (554)
+...|.++|+.+.+. +.|+.+. +.++|+++++. .|++++|++ ++...|.|...+.++|.+|+....-|. +.
T Consensus 8 ~~~~f~~~A~~~~~~-~~F~~~~---~~~~~~~~~~~--~p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P~-v~ 80 (184)
T PF13848_consen 8 LFEIFEEAAEKLKGD-YQFGVTF---NEELAKKYGIK--EPTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFPL-VP 80 (184)
T ss_dssp HHHHHHHHHHHHTTT-SEEEEEE----HHHHHHCTCS--SSEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSSTS-CE
T ss_pred HHHHHHHHHHhCcCC-cEEEEEc---HHHHHHHhCCC--CCcEEEeccCCCCceecccccCCHHHHHHHHHHhcccc-cc
Confidence 456899999999874 8998887 77899999997 399999977 456888876458899999999998887 77
Q ss_pred cCCcccHHHHHhhhhcCCce-EEEEEecCCchh---HHHH--HHhhccCCceEEEEEEccCCCChhHHhHhCCC-CCCce
Q psy16770 243 PLSATNVDAFLDNWREDNKV-HALLFQRSLPVR---LRYL--INAFKHRTTIVFGVIVYDQEDSSSVFQRFKVP-GDKDS 315 (554)
Q Consensus 243 ~~t~~~~~~fl~~~~~~~~~-~v~~f~~~~~~~---~~~~--~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~-~~~Pt 315 (554)
.+|.+++..+.. ...+ ++++|.+..... +... ..|.++++++.|++++++ ..+.+++.++++ .+.|+
T Consensus 81 ~~t~~n~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~--~~~~~~~~~~i~~~~~P~ 154 (184)
T PF13848_consen 81 ELTPENFEKLFS----SPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDAD--DFPRLLKYFGIDEDDLPA 154 (184)
T ss_dssp EESTTHHHHHHS----TSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETT--TTHHHHHHTTTTTSSSSE
T ss_pred ccchhhHHHHhc----CCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehH--HhHHHHHHcCCCCccCCE
Confidence 889999999884 3434 666676543332 2211 223377889999999987 568899999998 35899
Q ss_pred EEEEeCCCCCCCceeecCCCChhHHHhHHh
Q psy16770 316 LLIFKEDKDRPSASITMNSIPVPTLQDITD 345 (554)
Q Consensus 316 lvvfk~~~~~~~~~i~~~~~~~~~l~~fi~ 345 (554)
+++++..... ......+.++.+.|.+|++
T Consensus 155 ~vi~~~~~~~-~~~~~~~~~~~~~i~~Fl~ 183 (184)
T PF13848_consen 155 LVIFDSNKGK-YYYLPEGEITPESIEKFLN 183 (184)
T ss_dssp EEEEETTTSE-EEE--SSCGCHHHHHHHHH
T ss_pred EEEEECCCCc-EEcCCCCCCCHHHHHHHhc
Confidence 9999864443 2233577889999999986
No 136
>KOG1150|consensus
Probab=99.01 E-value=3.7e-10 Score=102.03 Aligned_cols=65 Identities=34% Similarity=0.605 Sum_probs=59.5
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--hhHHHHHHHHHHHHHHcCChHHHHhh
Q psy16770 16 AVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNND--PTAQEKFLQLTEAYNILSDAERRKQY 80 (554)
Q Consensus 16 ~~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~--~~~~~~~~~i~~Ay~~L~~~~~r~~y 80 (554)
+.+.|||+||.|.|..+.++||+.||+|+...|||||++ +.|...|.-+.+||.+|-|+..|..-
T Consensus 50 yfnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~ 116 (250)
T KOG1150|consen 50 YFNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRC 116 (250)
T ss_pred ccccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 578999999999999999999999999999999999985 56889999999999999999765543
No 137
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.97 E-value=7.4e-10 Score=95.25 Aligned_cols=86 Identities=22% Similarity=0.441 Sum_probs=63.3
Q ss_pred CCCCcEEEEEEcccccccccchHHHHHH---HHHhCCCCEEEEEEEecCc--------------------HHHHHHhCCc
Q psy16770 145 SYTTPHLILFYSDWCFACLQVEPIFKKL---MDELSPLGVGFFTVHVHNE--------------------QGLARRLGVG 201 (554)
Q Consensus 145 ~~~~~~lV~Fya~wC~~C~~l~p~~~~~---a~~l~~~~v~~~~Vd~~~~--------------------~~l~~~~~v~ 201 (554)
.++++.++.|++|||++|+++.+...+. ...++. ++.+..+++... .++++++||+
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 81 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD-DFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVN 81 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC-ECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc-CeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCC
Confidence 4678999999999999999999988753 444433 477888887753 3589999999
Q ss_pred CCCCcceec-cCCeEEEEeCCcccHHHHHHHH
Q psy16770 202 SQLPQIALL-TDGRTSFFKEPSFSVQKMVEFF 232 (554)
Q Consensus 202 ~~~Pti~~~-~~g~~~~y~~g~~~~~~i~~fl 232 (554)
+ +||++++ .+|+.+....|..+.++|.+++
T Consensus 82 g-tPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 82 G-TPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp S-SSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred c-cCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 8 9999999 5899876666777889988764
No 138
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.96 E-value=2.6e-09 Score=103.10 Aligned_cols=82 Identities=16% Similarity=0.227 Sum_probs=69.3
Q ss_pred CCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCcccHH
Q psy16770 147 TTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQ 226 (554)
Q Consensus 147 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~ 226 (554)
+...++.||++||++|+.+.|.+++++.+. + .+.+..||.+.++++++++||.+ +||++++++|.. +.|. ...+
T Consensus 133 ~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~-~-~i~~~~vD~~~~~~~~~~~~V~~-vPtl~i~~~~~~--~~G~-~~~~ 206 (215)
T TIGR02187 133 EPVRIEVFVTPTCPYCPYAVLMAHKFALAN-D-KILGEMIEANENPDLAEKYGVMS-VPKIVINKGVEE--FVGA-YPEE 206 (215)
T ss_pred CCcEEEEEECCCCCCcHHHHHHHHHHHHhc-C-ceEEEEEeCCCCHHHHHHhCCcc-CCEEEEecCCEE--EECC-CCHH
Confidence 344555599999999999999999998874 3 48999999999999999999997 999999988864 5554 4778
Q ss_pred HHHHHHHH
Q psy16770 227 KMVEFFRL 234 (554)
Q Consensus 227 ~i~~fl~~ 234 (554)
.|.+|+.+
T Consensus 207 ~l~~~l~~ 214 (215)
T TIGR02187 207 QFLEYILS 214 (215)
T ss_pred HHHHHHHh
Confidence 99999875
No 139
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.96 E-value=8e-10 Score=121.34 Aligned_cols=101 Identities=19% Similarity=0.341 Sum_probs=79.5
Q ss_pred ccccccccccC-CCCCCcEEEEEEcccccccccchHHH---HHHHHHhCCCCEEEEEEEecC----cHHHHHHhCCcCCC
Q psy16770 133 THWNFEKNYIP-KSYTTPHLILFYSDWCFACLQVEPIF---KKLMDELSPLGVGFFTVHVHN----EQGLARRLGVGSQL 204 (554)
Q Consensus 133 t~~~F~~~v~~-~~~~~~~lV~Fya~wC~~C~~l~p~~---~~~a~~l~~~~v~~~~Vd~~~----~~~l~~~~~v~~~~ 204 (554)
+.++|++.+.. +..+++++|+|||+||++|+.++|.. .++.+.++ ++.+.+||+++ +.+++++|++.+ +
T Consensus 459 s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~~~~~~~~l~~~~~v~g-~ 535 (571)
T PRK00293 459 TVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTANNAEDVALLKHYNVLG-L 535 (571)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCCCChhhHHHHHHcCCCC-C
Confidence 34566666532 23468999999999999999999875 67777776 47899999986 468999999998 9
Q ss_pred Ccceecc-CCeEE--EEeCCcccHHHHHHHHHHhC
Q psy16770 205 PQIALLT-DGRTS--FFKEPSFSVQKMVEFFRLKL 236 (554)
Q Consensus 205 Pti~~~~-~g~~~--~y~~g~~~~~~i~~fl~~~~ 236 (554)
||+++|. +|+.+ ....|..+.+++.+++++..
T Consensus 536 Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 536 PTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred CEEEEECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence 9999995 78763 44456678899999988753
No 140
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.95 E-value=1.5e-09 Score=99.81 Aligned_cols=66 Identities=21% Similarity=0.300 Sum_probs=57.5
Q ss_pred CCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCChh------HHHHHHHHHHHHHHcCChHHHHhhhccC
Q psy16770 19 LDPYETLGVPRT--ASLQEIRKNYKRLVVEWHPDKNNDPT------AQEKFLQLTEAYNILSDAERRKQYDLFG 84 (554)
Q Consensus 19 ~d~y~~Lgv~~~--a~~~~ik~ay~~l~~~~hPd~~~~~~------~~~~~~~i~~Ay~~L~~~~~r~~yd~~~ 84 (554)
.|||++||++++ .+..+++++||+|++++|||+..... +.+.-..||+||.+|+||.+|+.|=...
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L 75 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIAL 75 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHh
Confidence 589999999996 89999999999999999999975432 3455788999999999999999997643
No 141
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.90 E-value=5.7e-09 Score=111.63 Aligned_cols=89 Identities=25% Similarity=0.389 Sum_probs=74.1
Q ss_pred CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEE----------------------------EecCcHHHHHH
Q psy16770 146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV----------------------------HVHNEQGLARR 197 (554)
Q Consensus 146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~V----------------------------d~~~~~~l~~~ 197 (554)
.+++++|.|||+||++|++..|.+++++++++..++.+..| +++.+..+++.
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~ 134 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQS 134 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHHH
Confidence 56899999999999999999999999999987445655544 34556789999
Q ss_pred hCCcCCCCcceec-cCCeEEEEeCCcccHHHHHHHHHHh
Q psy16770 198 LGVGSQLPQIALL-TDGRTSFFKEPSFSVQKMVEFFRLK 235 (554)
Q Consensus 198 ~~v~~~~Pti~~~-~~g~~~~y~~g~~~~~~i~~fl~~~ 235 (554)
|+|.+ +||++++ ++|+++....|..+.+.|..+|+..
T Consensus 135 fgV~g-iPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~ 172 (521)
T PRK14018 135 LNISV-YPSWAIIGKDGDVQRIVKGSISEAQALALIRNP 172 (521)
T ss_pred cCCCC-cCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 99997 9999665 8899988777778989999999843
No 142
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.90 E-value=3.4e-09 Score=92.51 Aligned_cols=73 Identities=18% Similarity=0.216 Sum_probs=58.9
Q ss_pred CCCCcEEEEEEcccccccccchHH-HH--HHHHHhCCCCEEEEEEEecCcHHHHHH--------hCCcCCCCcceec-cC
Q psy16770 145 SYTTPHLILFYSDWCFACLQVEPI-FK--KLMDELSPLGVGFFTVHVHNEQGLARR--------LGVGSQLPQIALL-TD 212 (554)
Q Consensus 145 ~~~~~~lV~Fya~wC~~C~~l~p~-~~--~~a~~l~~~~v~~~~Vd~~~~~~l~~~--------~~v~~~~Pti~~~-~~ 212 (554)
..+++++|.||++||+.|+.+.+. |. ++++.+.. ++.+++||.++.++++++ +|+.| +||++++ .+
T Consensus 13 ~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~-~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G-~Pt~vfl~~~ 90 (124)
T cd02955 13 REDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE-NFVPIKVDREERPDVDKIYMNAAQAMTGQGG-WPLNVFLTPD 90 (124)
T ss_pred HcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC-CEEEEEEeCCcCcHHHHHHHHHHHHhcCCCC-CCEEEEECCC
Confidence 578899999999999999999873 33 56666655 489999999998888764 48998 9999999 67
Q ss_pred CeEEEEe
Q psy16770 213 GRTSFFK 219 (554)
Q Consensus 213 g~~~~y~ 219 (554)
|+++...
T Consensus 91 G~~~~~~ 97 (124)
T cd02955 91 LKPFFGG 97 (124)
T ss_pred CCEEeee
Confidence 8776443
No 143
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.87 E-value=1.1e-08 Score=95.17 Aligned_cols=88 Identities=22% Similarity=0.463 Sum_probs=74.3
Q ss_pred CCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC----------------------cHHHHHHhCCcCCC
Q psy16770 147 TTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN----------------------EQGLARRLGVGSQL 204 (554)
Q Consensus 147 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~----------------------~~~l~~~~~v~~~~ 204 (554)
+++++|.||++||++|+...|.+.++++++.+.++.+..|+++. +..++++||+.+ +
T Consensus 61 ~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~-~ 139 (173)
T PRK03147 61 GKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGP-L 139 (173)
T ss_pred CCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCC-c
Confidence 56899999999999999999999999999987678999998753 457899999997 9
Q ss_pred Ccceec-cCCeEEEEeCCcccHHHHHHHHHHh
Q psy16770 205 PQIALL-TDGRTSFFKEPSFSVQKMVEFFRLK 235 (554)
Q Consensus 205 Pti~~~-~~g~~~~y~~g~~~~~~i~~fl~~~ 235 (554)
|+++++ .+|+.+....|..+.+++.+++.+.
T Consensus 140 P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 140 PTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred CeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 998888 5788775555666888999988754
No 144
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.87 E-value=1.1e-09 Score=94.91 Aligned_cols=72 Identities=19% Similarity=0.422 Sum_probs=55.2
Q ss_pred CCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcH-HHHHHhCCcC-CCCcceec-cCCeEEE
Q psy16770 145 SYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQ-GLARRLGVGS-QLPQIALL-TDGRTSF 217 (554)
Q Consensus 145 ~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~-~l~~~~~v~~-~~Pti~~~-~~g~~~~ 217 (554)
..+++++|.|||+||++|+.+.|.+.+....... ...|..||.+.+. .+..++++.+ .+||++++ .+|+.+.
T Consensus 17 ~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~-~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~ 91 (117)
T cd02959 17 DSGKPLMLLIHKTWCGACKALKPKFAESKEISEL-SHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHP 91 (117)
T ss_pred HcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh-cCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCch
Confidence 4678999999999999999999999997765432 3456666666654 4567888873 39999999 5887643
No 145
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.85 E-value=1.1e-08 Score=101.94 Aligned_cols=88 Identities=20% Similarity=0.343 Sum_probs=69.2
Q ss_pred CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC-----------cHHHHHHhCCcCCCCcceeccC-C
Q psy16770 146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN-----------EQGLARRLGVGSQLPQIALLTD-G 213 (554)
Q Consensus 146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~-----------~~~l~~~~~v~~~~Pti~~~~~-g 213 (554)
.++++||.||++||++|+.+.|.+++++++++ +.+..|+.+. +..+++++||.+ +||++++.+ |
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg---~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~-vPtl~Lv~~~~ 240 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG---IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRT-VPAVFLADPDP 240 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC---cEEEEEeCCCCccccCCcccCCHHHHHHcCCCc-CCeEEEEECCC
Confidence 46789999999999999999999999999874 5555555543 467899999997 999999964 5
Q ss_pred eEEE-EeCCcccHHHHHHHHHHhCC
Q psy16770 214 RTSF-FKEPSFSVQKMVEFFRLKLP 237 (554)
Q Consensus 214 ~~~~-y~~g~~~~~~i~~fl~~~~~ 237 (554)
+.+. ...|..+.+.|.+.+.....
T Consensus 241 ~~v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 241 NQFTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred CEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 4433 33366688999888876654
No 146
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.83 E-value=7.5e-09 Score=80.25 Aligned_cols=59 Identities=20% Similarity=0.317 Sum_probs=52.0
Q ss_pred EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCe
Q psy16770 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGR 214 (554)
Q Consensus 151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~ 214 (554)
++.|+++||++|+.+.|.+++++.... ++.+..+|.++++++++++|+.+ +||+.+ +|+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~--~i~~~~id~~~~~~l~~~~~i~~-vPti~i--~~~ 61 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNP--NISAEMIDAAEFPDLADEYGVMS-VPAIVI--NGK 61 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCC--ceEEEEEEcccCHhHHHHcCCcc-cCEEEE--CCE
Confidence 678999999999999999999987542 59999999999999999999997 999866 454
No 147
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.82 E-value=7.1e-09 Score=94.27 Aligned_cols=55 Identities=29% Similarity=0.382 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCh------hHHHHHHHHHHHHHHcCChHHHHhhhccCC
Q psy16770 31 ASLQEIRKNYKRLVVEWHPDKNNDP------TAQEKFLQLTEAYNILSDAERRKQYDLFGT 85 (554)
Q Consensus 31 a~~~~ik~ay~~l~~~~hPd~~~~~------~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~ 85 (554)
.+.++|+++||+|++++|||+..+. .+.+.+..||+||++|+||.+|+.|+....
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~ 63 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH 63 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 4788999999999999999996532 256789999999999999999999997543
No 148
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.81 E-value=1e-08 Score=90.90 Aligned_cols=72 Identities=17% Similarity=0.407 Sum_probs=58.8
Q ss_pred CCcEEEEEEcccccccccchHHHHHHHHHhCCC--CEEEEEEEecCc------------------------HHHHHHhCC
Q psy16770 147 TTPHLILFYSDWCFACLQVEPIFKKLMDELSPL--GVGFFTVHVHNE------------------------QGLARRLGV 200 (554)
Q Consensus 147 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~--~v~~~~Vd~~~~------------------------~~l~~~~~v 200 (554)
+++++|.||++||++|+...|.+.++.+++... ++.+..|+.+.+ ..++++|+|
T Consensus 18 gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 97 (131)
T cd03009 18 GKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFKI 97 (131)
T ss_pred CcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcCC
Confidence 568999999999999999999999999888643 577777766543 467889999
Q ss_pred cCCCCcceec-cCCeEEEEe
Q psy16770 201 GSQLPQIALL-TDGRTSFFK 219 (554)
Q Consensus 201 ~~~~Pti~~~-~~g~~~~y~ 219 (554)
.+ +|+++++ ++|+++...
T Consensus 98 ~~-~P~~~lid~~G~i~~~~ 116 (131)
T cd03009 98 EG-IPTLIILDADGEVVTTD 116 (131)
T ss_pred CC-CCEEEEECCCCCEEccc
Confidence 97 9999999 478766543
No 149
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.81 E-value=3.4e-08 Score=86.29 Aligned_cols=104 Identities=12% Similarity=0.154 Sum_probs=84.0
Q ss_pred cccccccccccCCCCCCcEEEEEEcc--cccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCccee
Q psy16770 132 TTHWNFEKNYIPKSYTTPHLILFYSD--WCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIAL 209 (554)
Q Consensus 132 Lt~~~F~~~v~~~~~~~~~lV~Fya~--wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~ 209 (554)
++..+.+..+ ...+..++.|-.+ -++.+...+=.++++++++.+..+.+++||++.++.++.+|||.+ +||+++
T Consensus 22 ~~~~~~~~~~---~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~s-iPTLl~ 97 (132)
T PRK11509 22 VSESRLDDWL---TQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFR-FPATLV 97 (132)
T ss_pred cccccHHHHH---hCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCcc-CCEEEE
Confidence 3445566666 2344555544433 356777888899999999975359999999999999999999997 999999
Q ss_pred ccCCeEEEEeCCcccHHHHHHHHHHhCCCC
Q psy16770 210 LTDGRTSFFKEPSFSVQKMVEFFRLKLPYK 239 (554)
Q Consensus 210 ~~~g~~~~y~~g~~~~~~i~~fl~~~~~~~ 239 (554)
|++|+.+....|.++.+.+.+++.+.+..+
T Consensus 98 FkdGk~v~~i~G~~~k~~l~~~I~~~L~~~ 127 (132)
T PRK11509 98 FTGGNYRGVLNGIHPWAELINLMRGLVEPQ 127 (132)
T ss_pred EECCEEEEEEeCcCCHHHHHHHHHHHhcCc
Confidence 999999988878889999999999887665
No 150
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.80 E-value=2.6e-08 Score=90.38 Aligned_cols=85 Identities=13% Similarity=0.261 Sum_probs=61.8
Q ss_pred CCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCc------------HHHH-HHh---CCcCCCCcceec
Q psy16770 147 TTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE------------QGLA-RRL---GVGSQLPQIALL 210 (554)
Q Consensus 147 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~------------~~l~-~~~---~v~~~~Pti~~~ 210 (554)
.+..+|+|||+||++|++..|.+++++++++ +.+..|+.+.. .... ..+ ++.+ +||.+++
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~---~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~-iPTt~LI 125 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFG---LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVV-TPATFLV 125 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcC---CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCC-CCeEEEE
Confidence 4456999999999999999999999999873 45555555532 3333 345 7887 9999999
Q ss_pred -cCCeE-EEEeCCcccHHHHHHHHHHh
Q psy16770 211 -TDGRT-SFFKEPSFSVQKMVEFFRLK 235 (554)
Q Consensus 211 -~~g~~-~~y~~g~~~~~~i~~fl~~~ 235 (554)
++|.. ....-|..+.+.+.+.+.+.
T Consensus 126 D~~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 126 NVNTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred eCCCCEEEEEeecccCHHHHHHHHHHh
Confidence 55654 43344556888888877654
No 151
>KOG0914|consensus
Probab=98.79 E-value=1.8e-09 Score=99.29 Aligned_cols=79 Identities=22% Similarity=0.367 Sum_probs=71.2
Q ss_pred CCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcC-----CCCcceeccCCeEEE
Q psy16770 143 PKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGS-----QLPQIALLTDGRTSF 217 (554)
Q Consensus 143 ~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~-----~~Pti~~~~~g~~~~ 217 (554)
..+..+.|+|+|||-|.+.|.+..|.|.+++.++...+++||+||.+..++.+.+|+|+. ..||+++|.+|+.+.
T Consensus 140 ~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~srQLPT~ilFq~gkE~~ 219 (265)
T KOG0914|consen 140 DRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSRQLPTYILFQKGKEVS 219 (265)
T ss_pred ccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccccCCeEEEEccchhhh
Confidence 446788999999999999999999999999999998789999999999999999999865 799999999998766
Q ss_pred EeCC
Q psy16770 218 FKEP 221 (554)
Q Consensus 218 y~~g 221 (554)
+...
T Consensus 220 RrP~ 223 (265)
T KOG0914|consen 220 RRPD 223 (265)
T ss_pred cCcc
Confidence 5543
No 152
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.78 E-value=1.4e-08 Score=90.16 Aligned_cols=73 Identities=18% Similarity=0.367 Sum_probs=59.1
Q ss_pred CCCcEEEEEEcccccccccchHHHHHHHHHhCCC--CEEEEEEEecCc-------------------------HHHHHHh
Q psy16770 146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPL--GVGFFTVHVHNE-------------------------QGLARRL 198 (554)
Q Consensus 146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~--~v~~~~Vd~~~~-------------------------~~l~~~~ 198 (554)
.+++++|.||++||++|+...|.++++++.+++. ++.+..|+.+.+ ..+++.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 4578999999999999999999999999988753 577777776653 2467789
Q ss_pred CCcCCCCcceec-cCCeEEEEe
Q psy16770 199 GVGSQLPQIALL-TDGRTSFFK 219 (554)
Q Consensus 199 ~v~~~~Pti~~~-~~g~~~~y~ 219 (554)
+|.+ +|+++++ ++|+++...
T Consensus 96 ~v~~-iPt~~lid~~G~iv~~~ 116 (132)
T cd02964 96 KVEG-IPTLVVLKPDGDVVTTN 116 (132)
T ss_pred CCCC-CCEEEEECCCCCEEchh
Confidence 9997 9999999 477766544
No 153
>KOG0913|consensus
Probab=98.77 E-value=1.2e-09 Score=101.96 Aligned_cols=101 Identities=23% Similarity=0.360 Sum_probs=91.4
Q ss_pred cccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770 128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI 207 (554)
Q Consensus 128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti 207 (554)
.+..++.+|+.... ..-|+++|+||||+.|+.+.|+|+..|.--.+.+|.+++||.+.++.|.-+|-|.. .|||
T Consensus 25 ~~~~~~eenw~~~l-----~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vta-LptI 98 (248)
T KOG0913|consen 25 KLTRIDEENWKELL-----TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTA-LPTI 98 (248)
T ss_pred eeEEecccchhhhh-----chHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEe-cceE
Confidence 57788999998876 34799999999999999999999999998888899999999999999999999996 9999
Q ss_pred eeccCCeEEEEeCCcccHHHHHHHHHHh
Q psy16770 208 ALLTDGRTSFFKEPSFSVQKMVEFFRLK 235 (554)
Q Consensus 208 ~~~~~g~~~~y~~g~~~~~~i~~fl~~~ 235 (554)
.-.++|....|.|. |+..++++|+..+
T Consensus 99 YHvkDGeFrrysga-Rdk~dfisf~~~r 125 (248)
T KOG0913|consen 99 YHVKDGEFRRYSGA-RDKNDFISFEEHR 125 (248)
T ss_pred EEeeccccccccCc-ccchhHHHHHHhh
Confidence 99999998888866 5889999999754
No 154
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.75 E-value=3e-08 Score=84.50 Aligned_cols=72 Identities=31% Similarity=0.525 Sum_probs=63.6
Q ss_pred CCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCc-----------------------HHHHHHhCCcCC
Q psy16770 147 TTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE-----------------------QGLARRLGVGSQ 203 (554)
Q Consensus 147 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~-----------------------~~l~~~~~v~~~ 203 (554)
+++++|.||++||++|+...+.+.++.+.+...++.++.|+++.+ ..+++.|++.+
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 97 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG- 97 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc-
Confidence 579999999999999999999999999999755799999999986 78999999997
Q ss_pred CCcceec-cCCeEEEEe
Q psy16770 204 LPQIALL-TDGRTSFFK 219 (554)
Q Consensus 204 ~Pti~~~-~~g~~~~y~ 219 (554)
+|+++++ .+|+.+..+
T Consensus 98 ~P~~~l~d~~g~v~~~~ 114 (116)
T cd02966 98 LPTTFLIDRDGRIRARH 114 (116)
T ss_pred cceEEEECCCCcEEEEe
Confidence 9999988 578766544
No 155
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.75 E-value=2.7e-08 Score=87.59 Aligned_cols=78 Identities=19% Similarity=0.432 Sum_probs=60.8
Q ss_pred CCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEE-----------------------ecCcHHHHHHhCCcCC
Q psy16770 147 TTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVH-----------------------VHNEQGLARRLGVGSQ 203 (554)
Q Consensus 147 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd-----------------------~~~~~~l~~~~~v~~~ 203 (554)
+++++|.||++||++|+...|.++++++.. ++.+..|+ ++.+..+++.|++.+
T Consensus 25 gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~- 100 (127)
T cd03010 25 GKPYLLNVWASWCAPCREEHPVLMALARQG---RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYG- 100 (127)
T ss_pred CCEEEEEEEcCcCHHHHHHHHHHHHHHHhc---CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCC-
Confidence 568999999999999999999999998775 25555554 455678899999997
Q ss_pred CCcceec-cCCeEEEEeCCcccHHHH
Q psy16770 204 LPQIALL-TDGRTSFFKEPSFSVQKM 228 (554)
Q Consensus 204 ~Pti~~~-~~g~~~~y~~g~~~~~~i 228 (554)
+|+.+++ ++|+......|..+.+.|
T Consensus 101 ~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 101 VPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CCeEEEECCCceEEEEEeccCChHhc
Confidence 9965555 799987766666665543
No 156
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.73 E-value=3.4e-08 Score=91.98 Aligned_cols=86 Identities=21% Similarity=0.398 Sum_probs=66.8
Q ss_pred CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEE-----------------------ecCcHHHHHHhCCcC
Q psy16770 146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVH-----------------------VHNEQGLARRLGVGS 202 (554)
Q Consensus 146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd-----------------------~~~~~~l~~~~~v~~ 202 (554)
.+++++|.||++||++|++..|.++++++. ++.+..|+ ++.+..+++.|++.+
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~----~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~ 137 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD----GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYG 137 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc----CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCee
Confidence 467999999999999999999999888763 34444444 344556788899997
Q ss_pred CCCcceec-cCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770 203 QLPQIALL-TDGRTSFFKEPSFSVQKMVEFFRLKL 236 (554)
Q Consensus 203 ~~Pti~~~-~~g~~~~y~~g~~~~~~i~~fl~~~~ 236 (554)
+|+.+++ ++|+......|..+.+++.+++.+.+
T Consensus 138 -~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~ 171 (173)
T TIGR00385 138 -APETFLVDGNGVILYRHAGPLNNEVWTEGFLPAM 171 (173)
T ss_pred -CCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHh
Confidence 9966555 78998776667678899998887765
No 157
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=98.72 E-value=3.3e-08 Score=88.66 Aligned_cols=73 Identities=19% Similarity=0.302 Sum_probs=58.9
Q ss_pred CCCcEEEEEEcccccccccchHHHHHHHHHhCC-------CCEEEEEEEecCc-------------------------HH
Q psy16770 146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSP-------LGVGFFTVHVHNE-------------------------QG 193 (554)
Q Consensus 146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~-------~~v~~~~Vd~~~~-------------------------~~ 193 (554)
.+++++|.|||+||++|++..|.+.++.+.+++ .++.+..|+.+.+ ..
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 467999999999999999999999998877653 2578888876642 25
Q ss_pred HHHHhCCcCCCCcceec-cCCeEEEEe
Q psy16770 194 LARRLGVGSQLPQIALL-TDGRTSFFK 219 (554)
Q Consensus 194 l~~~~~v~~~~Pti~~~-~~g~~~~y~ 219 (554)
++++|++.+ +||++++ .+|+++...
T Consensus 104 l~~~y~v~~-iPt~vlId~~G~Vv~~~ 129 (146)
T cd03008 104 LEAQFSVEE-LPTVVVLKPDGDVLAAN 129 (146)
T ss_pred HHHHcCCCC-CCEEEEECCCCcEEeeC
Confidence 788999997 9999999 578776553
No 158
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.70 E-value=5.4e-08 Score=91.70 Aligned_cols=87 Identities=16% Similarity=0.318 Sum_probs=67.4
Q ss_pred CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCc-----------------------HHHHHHhCCcC
Q psy16770 146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE-----------------------QGLARRLGVGS 202 (554)
Q Consensus 146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~-----------------------~~l~~~~~v~~ 202 (554)
.+++++|.||++||++|++..|.+.++.+. ++.+..|+.+.+ ..++..|||.+
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~----~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~ 142 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ----GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYG 142 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc----CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCc
Confidence 467999999999999999999999888652 567777775432 23566889997
Q ss_pred CCCcceec-cCCeEEEEeCCcccHHHHHHHHHHhCC
Q psy16770 203 QLPQIALL-TDGRTSFFKEPSFSVQKMVEFFRLKLP 237 (554)
Q Consensus 203 ~~Pti~~~-~~g~~~~y~~g~~~~~~i~~fl~~~~~ 237 (554)
+|+.+++ ++|++...+.|..+.+.+.+.++..+.
T Consensus 143 -~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~ 177 (185)
T PRK15412 143 -APETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWE 177 (185)
T ss_pred -CCeEEEECCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 9976666 789887777677788888888876653
No 159
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=98.70 E-value=4.5e-08 Score=81.41 Aligned_cols=67 Identities=28% Similarity=0.674 Sum_probs=54.0
Q ss_pred CCcEEEEEEcccccccccchHHHHHHHHHhC-CCCEEEEEEEecCc-------------------------HHHHHHhCC
Q psy16770 147 TTPHLILFYSDWCFACLQVEPIFKKLMDELS-PLGVGFFTVHVHNE-------------------------QGLARRLGV 200 (554)
Q Consensus 147 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~-~~~v~~~~Vd~~~~-------------------------~~l~~~~~v 200 (554)
+++++|.|||+||++|++..|.+.++.+.++ +.++.+..|.++.+ ..+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 4689999999999999999999999999999 44699999988773 257778888
Q ss_pred cCCCCcceec-cCCe
Q psy16770 201 GSQLPQIALL-TDGR 214 (554)
Q Consensus 201 ~~~~Pti~~~-~~g~ 214 (554)
.+ +|+++++ ++|+
T Consensus 81 ~~-iP~~~lld~~G~ 94 (95)
T PF13905_consen 81 NG-IPTLVLLDPDGK 94 (95)
T ss_dssp TS-SSEEEEEETTSB
T ss_pred Cc-CCEEEEECCCCC
Confidence 87 9988888 5564
No 160
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.70 E-value=7.2e-08 Score=79.18 Aligned_cols=76 Identities=14% Similarity=0.138 Sum_probs=62.8
Q ss_pred CCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCcccHH
Q psy16770 147 TTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQ 226 (554)
Q Consensus 147 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~ 226 (554)
+..-+..|+++||++|....+.++++++... ++.+..+|.++.++++.+|||.+ +||+++ +|+... .| ..+.+
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~--~i~~~~vd~~~~~e~a~~~~V~~-vPt~vi--dG~~~~-~G-~~~~~ 84 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLNP--NIEHEMIDGALFQDEVEERGIMS-VPAIFL--NGELFG-FG-RMTLE 84 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHCC--CceEEEEEhHhCHHHHHHcCCcc-CCEEEE--CCEEEE-eC-CCCHH
Confidence 4567888999999999999999999998764 48999999999999999999997 999965 787544 34 44656
Q ss_pred HHH
Q psy16770 227 KMV 229 (554)
Q Consensus 227 ~i~ 229 (554)
+++
T Consensus 85 e~~ 87 (89)
T cd03026 85 EIL 87 (89)
T ss_pred HHh
Confidence 553
No 161
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.61 E-value=1.5e-07 Score=82.14 Aligned_cols=81 Identities=21% Similarity=0.377 Sum_probs=61.0
Q ss_pred CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEE---------------------EecCcHHHHHHhCCcCCC
Q psy16770 146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---------------------HVHNEQGLARRLGVGSQL 204 (554)
Q Consensus 146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~V---------------------d~~~~~~l~~~~~v~~~~ 204 (554)
.+++++|.||++||++|+.+.|.+.++++.+. +....+ -++.+..++++|+|.+ +
T Consensus 19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~-~ 94 (123)
T cd03011 19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP---VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSV-T 94 (123)
T ss_pred CCCEEEEEEECCcChhhhhhChHHHHHHhhCC---EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCc-c
Confidence 34799999999999999999999999887743 221212 2245678999999997 9
Q ss_pred CcceeccCCeEEEEeCCcccHHHHHH
Q psy16770 205 PQIALLTDGRTSFFKEPSFSVQKMVE 230 (554)
Q Consensus 205 Pti~~~~~g~~~~y~~g~~~~~~i~~ 230 (554)
|+++++.++.......|..+.++|.+
T Consensus 95 P~~~vid~~gi~~~~~g~~~~~~~~~ 120 (123)
T cd03011 95 PAIVIVDPGGIVFVTTGVTSEWGLRL 120 (123)
T ss_pred cEEEEEcCCCeEEEEeccCCHHHHHh
Confidence 99999965556555556667777754
No 162
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.58 E-value=1.6e-07 Score=110.23 Aligned_cols=90 Identities=20% Similarity=0.293 Sum_probs=75.6
Q ss_pred CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEe---------------------------cCcHHHHHHh
Q psy16770 146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHV---------------------------HNEQGLARRL 198 (554)
Q Consensus 146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~---------------------------~~~~~l~~~~ 198 (554)
.+++++|.|||+||++|++..|.++++++++++.++.+..|.+ +.+..+.++|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 4689999999999999999999999999999876777777742 2245678899
Q ss_pred CCcCCCCcceec-cCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770 199 GVGSQLPQIALL-TDGRTSFFKEPSFSVQKMVEFFRLKL 236 (554)
Q Consensus 199 ~v~~~~Pti~~~-~~g~~~~y~~g~~~~~~i~~fl~~~~ 236 (554)
+|.+ +|+++++ ++|+++....|....+.+.+++...+
T Consensus 499 ~V~~-iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l 536 (1057)
T PLN02919 499 GVSS-WPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAAL 536 (1057)
T ss_pred CCCc-cceEEEECCCCeEEEEEecccCHHHHHHHHHHHH
Confidence 9997 9999999 79998777767667788888888764
No 163
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=8.2e-08 Score=90.93 Aligned_cols=71 Identities=31% Similarity=0.409 Sum_probs=63.1
Q ss_pred cCCCCCcccccCCCC---CCCHHHHHHHHHHHHHHhCCCCCC---ChhHHHHHHHHHHHHHHcCChHHHHhhhccCC
Q psy16770 15 CAVSLDPYETLGVPR---TASLQEIRKNYKRLVVEWHPDKNN---DPTAQEKFLQLTEAYNILSDAERRKQYDLFGT 85 (554)
Q Consensus 15 ~~~~~d~y~~Lgv~~---~a~~~~ik~ay~~l~~~~hPd~~~---~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~ 85 (554)
.+...|.|.+||++. .+++.+|.+|.++.+.+||||+.. +.+..+.|..|+.||++|+|+.+|..||.-..
T Consensus 39 ~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df 115 (379)
T COG5269 39 NWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDF 115 (379)
T ss_pred hhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhcccccc
Confidence 466789999999987 789999999999999999999963 45678999999999999999999999997443
No 164
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.51 E-value=3.7e-07 Score=78.54 Aligned_cols=59 Identities=17% Similarity=0.415 Sum_probs=44.2
Q ss_pred CCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEE---EecCcHHHHHHhCCcCCCCcc
Q psy16770 147 TTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---HVHNEQGLARRLGVGSQLPQI 207 (554)
Q Consensus 147 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~V---d~~~~~~l~~~~~v~~~~Pti 207 (554)
+++++|.||++||++|+...|.++++++.+.+ ++.+..+ +.+....+++++++.+ +|++
T Consensus 21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~-~~~vi~v~~~~~~~~~~~~~~~~~~~-~p~~ 82 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD-WLDVVLASDGEKAEHQRFLKKHGLEA-FPYV 82 (114)
T ss_pred CCeEEEEEECCCCcchHhHhHHHHHHHHHhcC-CcEEEEEeCCCHHHHHHHHHHhCCCC-CcEE
Confidence 57999999999999999999999999888765 4666655 2223445666666664 6654
No 165
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.50 E-value=4.4e-07 Score=79.83 Aligned_cols=74 Identities=22% Similarity=0.345 Sum_probs=59.8
Q ss_pred CCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEec---------------------------CcHHHHHHhC
Q psy16770 147 TTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVH---------------------------NEQGLARRLG 199 (554)
Q Consensus 147 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~---------------------------~~~~l~~~~~ 199 (554)
+++++|.||+.||+.|.+..|.++++.++++..++.+..|+.. .+..+++.|+
T Consensus 23 gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~~ 102 (126)
T cd03012 23 GKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAYG 102 (126)
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHhC
Confidence 4689999999999999999999999999998767888888652 1235677889
Q ss_pred CcCCCCcceec-cCCeEEEEeCC
Q psy16770 200 VGSQLPQIALL-TDGRTSFFKEP 221 (554)
Q Consensus 200 v~~~~Pti~~~-~~g~~~~y~~g 221 (554)
+.+ +|+.+++ ++|++.....|
T Consensus 103 v~~-~P~~~vid~~G~v~~~~~G 124 (126)
T cd03012 103 NQY-WPALYLIDPTGNVRHVHFG 124 (126)
T ss_pred CCc-CCeEEEECCCCcEEEEEec
Confidence 987 9998888 57877655443
No 166
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.48 E-value=6.4e-07 Score=82.85 Aligned_cols=83 Identities=16% Similarity=0.335 Sum_probs=64.2
Q ss_pred EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCc-------------HHHHHHhCC--cCCCCcceec-cCCe
Q psy16770 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE-------------QGLARRLGV--GSQLPQIALL-TDGR 214 (554)
Q Consensus 151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~-------------~~l~~~~~v--~~~~Pti~~~-~~g~ 214 (554)
+|.||++||++|++..|.++++++++ ++.+..|+.+.. ..+...||+ .+ +|+..++ ++|+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~-iPttfLId~~G~ 148 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVA-TPTTFLVNVNTL 148 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHc---CCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCC-CCeEEEEeCCCc
Confidence 77799999999999999999999997 356666665532 346778995 67 9999999 7888
Q ss_pred EE--EEeCCcccHHHHHHHHHHhCCC
Q psy16770 215 TS--FFKEPSFSVQKMVEFFRLKLPY 238 (554)
Q Consensus 215 ~~--~y~~g~~~~~~i~~fl~~~~~~ 238 (554)
.. .+.| ..+.+.+.+.+.+.+.-
T Consensus 149 i~~~~~~G-~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 149 EALPLLQG-ATDAAGFMARMDTVLQM 173 (181)
T ss_pred EEEEEEEC-CCCHHHHHHHHHHHHhh
Confidence 74 3554 56888888888776643
No 167
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.45 E-value=8.9e-07 Score=76.44 Aligned_cols=89 Identities=12% Similarity=0.172 Sum_probs=71.7
Q ss_pred CCCCcEEEEEEcccccccccchH-HH--HHHHHHhCCCCEEEEEEEec--CcHHHHHHhCCcCCCCcceec-c-CCeEEE
Q psy16770 145 SYTTPHLILFYSDWCFACLQVEP-IF--KKLMDELSPLGVGFFTVHVH--NEQGLARRLGVGSQLPQIALL-T-DGRTSF 217 (554)
Q Consensus 145 ~~~~~~lV~Fya~wC~~C~~l~p-~~--~~~a~~l~~~~v~~~~Vd~~--~~~~l~~~~~v~~~~Pti~~~-~-~g~~~~ 217 (554)
..+++++|.|+++||+.|+.+.. .| .++.+.++. ...+.++|.+ +...++..|++.+ +|++.++ . +|+.+.
T Consensus 15 ~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~-~~v~~~~d~~~~e~~~~~~~~~~~~-~P~~~~i~~~~g~~l~ 92 (114)
T cd02958 15 SEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE-NFIFWQCDIDSSEGQRFLQSYKVDK-YPHIAIIDPRTGEVLK 92 (114)
T ss_pred hhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh-CEEEEEecCCCccHHHHHHHhCccC-CCeEEEEeCccCcEeE
Confidence 56889999999999999999875 34 345566655 4778888887 4568999999997 9999999 3 688888
Q ss_pred EeCCcccHHHHHHHHHHh
Q psy16770 218 FKEPSFSVQKMVEFFRLK 235 (554)
Q Consensus 218 y~~g~~~~~~i~~fl~~~ 235 (554)
...|..+++.+.+-+++.
T Consensus 93 ~~~G~~~~~~f~~~L~~~ 110 (114)
T cd02958 93 VWSGNITPEDLLSQLIEF 110 (114)
T ss_pred EEcCCCCHHHHHHHHHHH
Confidence 888888999988887764
No 168
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.43 E-value=6.5e-07 Score=85.22 Aligned_cols=91 Identities=12% Similarity=0.119 Sum_probs=70.1
Q ss_pred CCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC-----------cHHHHHHhCCcCCCC----------
Q psy16770 147 TTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN-----------EQGLARRLGVGSQLP---------- 205 (554)
Q Consensus 147 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~-----------~~~l~~~~~v~~~~P---------- 205 (554)
++++||.|||+||+.|.+..|.++++.+++++.|+.+..|+|+. ....++++++. ||
T Consensus 39 Gkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~--fpvl~d~~v~g~ 116 (199)
T PTZ00056 39 NKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIK--YNFFEPIEVNGE 116 (199)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCC--ceeeeeeeccCC
Confidence 56999999999999999999999999999988789999998741 23456666652 33
Q ss_pred ------------------------------cceec-cCCeEEEEeCCcccHHHHHHHHHHhCCCC
Q psy16770 206 ------------------------------QIALL-TDGRTSFFKEPSFSVQKMVEFFRLKLPYK 239 (554)
Q Consensus 206 ------------------------------ti~~~-~~g~~~~y~~g~~~~~~i~~fl~~~~~~~ 239 (554)
+..++ ++|+++.+++|..+.+.+.+.+.+.+..+
T Consensus 117 ~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~~~ 181 (199)
T PTZ00056 117 NTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLGVK 181 (199)
T ss_pred ccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 22233 78988888888778788888887665433
No 169
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.36 E-value=1.3e-06 Score=78.75 Aligned_cols=78 Identities=24% Similarity=0.519 Sum_probs=64.6
Q ss_pred CCCcEEEEEEcc-cccccccchHHHHHHHHHhCCCCEEEEEEEecCc---------------------HHHHHHhCCc--
Q psy16770 146 YTTPHLILFYSD-WCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE---------------------QGLARRLGVG-- 201 (554)
Q Consensus 146 ~~~~~lV~Fya~-wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~---------------------~~l~~~~~v~-- 201 (554)
.+++++|.||+. ||++|....|.+.++++.++..++.+..|..+.+ ..+.+++++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 106 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM 106 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence 467899999999 9999999999999999988776788888877653 3688899988
Q ss_pred -------CCCCcceec-cCCeEEEEeCCccc
Q psy16770 202 -------SQLPQIALL-TDGRTSFFKEPSFS 224 (554)
Q Consensus 202 -------~~~Pti~~~-~~g~~~~y~~g~~~ 224 (554)
+ +|+++++ ++|++.....|...
T Consensus 107 ~~~~~~~~-~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 107 EDPGNGFG-IPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp CCTTTTSS-SSEEEEEETTSBEEEEEESSBT
T ss_pred cccccCCe-ecEEEEEECCCEEEEEEeCCCC
Confidence 8 9998777 88988766655433
No 170
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.30 E-value=3.3e-06 Score=82.01 Aligned_cols=90 Identities=13% Similarity=0.070 Sum_probs=66.3
Q ss_pred CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC-----------cHHHH-HHhCCc------------
Q psy16770 146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN-----------EQGLA-RRLGVG------------ 201 (554)
Q Consensus 146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~-----------~~~l~-~~~~v~------------ 201 (554)
.+++++|.||++||+.|....|.+.++.+++++.|+.+..|+|+. ..+.+ +++++.
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~ 177 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP 177 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence 357999999999999999999999999999988789999999841 12232 344432
Q ss_pred ----------------------CCCCcceec-cCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770 202 ----------------------SQLPQIALL-TDGRTSFFKEPSFSVQKMVEFFRLKL 236 (554)
Q Consensus 202 ----------------------~~~Pti~~~-~~g~~~~y~~g~~~~~~i~~fl~~~~ 236 (554)
+ .|+..++ ++|+++..+.|..+.+.|...|++.+
T Consensus 178 ~~~~~y~~l~~~~~~~~g~~i~~-~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL 234 (236)
T PLN02399 178 STAPVYQFLKSNAGGFLGDLIKW-NFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLL 234 (236)
T ss_pred hhhHHHHHHHHhcCCccCCcccc-CceEEEECCCCcEEEEECCCCCHHHHHHHHHHHh
Confidence 1 2444445 67877777667667777877777654
No 171
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.30 E-value=9.6e-07 Score=93.89 Aligned_cols=98 Identities=19% Similarity=0.399 Sum_probs=74.2
Q ss_pred cccccccCCCCCCcEEEEEEcccccccccchHH-HHHHHHHhCCCCEEEEEEEecCc----HHHHHHhCCcCCCCcceec
Q psy16770 136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPI-FKKLMDELSPLGVGFFTVHVHNE----QGLARRLGVGSQLPQIALL 210 (554)
Q Consensus 136 ~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~-~~~~a~~l~~~~v~~~~Vd~~~~----~~l~~~~~v~~~~Pti~~~ 210 (554)
..+..+.+ ..++|++++|||+||-.||.+++. +.+.....+-.++...++|.|++ .++-+++|+-| .|++++|
T Consensus 464 ~L~~~la~-~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G-~P~~~ff 541 (569)
T COG4232 464 ELDQALAE-AKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFG-VPTYLFF 541 (569)
T ss_pred HHHHHHHh-CCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCC-CCEEEEE
Confidence 44444432 334699999999999999998874 43333333333699999999984 57889999998 9999999
Q ss_pred c-CCeEEEEeCCcccHHHHHHHHHHh
Q psy16770 211 T-DGRTSFFKEPSFSVQKMVEFFRLK 235 (554)
Q Consensus 211 ~-~g~~~~y~~g~~~~~~i~~fl~~~ 235 (554)
. +|+...--.|..+++.+.+++++.
T Consensus 542 ~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 542 GPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred CCCCCcCcCCcceecHHHHHHHHHHh
Confidence 6 676554467888999999999875
No 172
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.23 E-value=3.2e-06 Score=71.69 Aligned_cols=70 Identities=30% Similarity=0.610 Sum_probs=61.8
Q ss_pred CCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEec-CcHHHHHHhC--CcCCCCcceeccCCeEEEE
Q psy16770 147 TTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVH-NEQGLARRLG--VGSQLPQIALLTDGRTSFF 218 (554)
Q Consensus 147 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~-~~~~l~~~~~--v~~~~Pti~~~~~g~~~~y 218 (554)
++++++.||++||++|+.+.|.+.++++.+.. .+.+..+|.. .++.+...++ +.. +|++.++.+|.....
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~ 104 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVDDENPDLAAEFGVAVRS-IPTLLLFKDGKEVDR 104 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECCCCChHHHHHHhhhhcc-CCeEEEEeCcchhhh
Confidence 66899999999999999999999999999986 5899999997 8999999999 896 999998877765433
No 173
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.23 E-value=3.7e-06 Score=65.78 Aligned_cols=68 Identities=16% Similarity=0.419 Sum_probs=52.2
Q ss_pred EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHH----HHHHhCCcCCCCcceeccCCeEEEEeCCcccHH
Q psy16770 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQG----LARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQ 226 (554)
Q Consensus 151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~----l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~ 226 (554)
+..|+++||++|+++.+.+++ .++.+..+|.+.++. +++.+|+.+ +|++.+. |+. ..|. +.+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-------~~i~~~~vdi~~~~~~~~~~~~~~~~~~-vP~~~~~--~~~---~~g~-~~~ 67 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-------KGIAFEEIDVEKDSAAREEVLKVLGQRG-VPVIVIG--HKI---IVGF-DPE 67 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-------CCCeEEEEeccCCHHHHHHHHHHhCCCc-ccEEEEC--CEE---EeeC-CHH
Confidence 467999999999998887764 258889999988654 567799997 9999885 544 3343 668
Q ss_pred HHHHHH
Q psy16770 227 KMVEFF 232 (554)
Q Consensus 227 ~i~~fl 232 (554)
.|.+++
T Consensus 68 ~i~~~i 73 (74)
T TIGR02196 68 KLDQLL 73 (74)
T ss_pred HHHHHh
Confidence 887776
No 174
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.23 E-value=7.2e-06 Score=74.68 Aligned_cols=42 Identities=17% Similarity=0.129 Sum_probs=38.8
Q ss_pred CCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEe
Q psy16770 147 TTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHV 188 (554)
Q Consensus 147 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~ 188 (554)
+++++|.||++||+.|++..|.+.++.++++..|+.+..|+|
T Consensus 22 Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~ 63 (153)
T TIGR02540 22 GKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPC 63 (153)
T ss_pred CCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEec
Confidence 467899999999999999999999999999877899999997
No 175
>KOG0568|consensus
Probab=98.22 E-value=7.9e-07 Score=82.39 Aligned_cols=57 Identities=26% Similarity=0.592 Sum_probs=52.4
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHH-HcCCh
Q psy16770 18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYN-ILSDA 74 (554)
Q Consensus 18 ~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~-~L~~~ 74 (554)
-..+|.+|||..+++..++|.||..|++++|||...+....++|+.|.+||. +|+.-
T Consensus 46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~~ 103 (342)
T KOG0568|consen 46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQEK 103 (342)
T ss_pred HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999988888899999999998 77654
No 176
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.20 E-value=6.3e-07 Score=72.48 Aligned_cols=64 Identities=23% Similarity=0.386 Sum_probs=48.6
Q ss_pred CCCCcEEEEEEcccccccccchHHH---HHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceecc
Q psy16770 145 SYTTPHLILFYSDWCFACLQVEPIF---KKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLT 211 (554)
Q Consensus 145 ~~~~~~lV~Fya~wC~~C~~l~p~~---~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~ 211 (554)
..+++++|.|+++||+.|+.+...+ .++.+.+.. ++.+..||.+.........+ .+ +|+++++.
T Consensus 15 ~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~-~fv~v~vd~~~~~~~~~~~~-~~-~P~~~~ld 81 (82)
T PF13899_consen 15 KEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK-NFVLVKVDVDDEDPNAQFDR-QG-YPTFFFLD 81 (82)
T ss_dssp HHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH-CSEEEEEETTTHHHHHHHHH-CS-SSEEEEEE
T ss_pred HcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC-CEEEEEEEcCCCChhHHhCC-cc-CCEEEEeC
Confidence 4688999999999999999988765 344443443 58999999988665443333 87 99998863
No 177
>PLN02412 probable glutathione peroxidase
Probab=98.18 E-value=9.6e-06 Score=75.02 Aligned_cols=43 Identities=12% Similarity=0.065 Sum_probs=39.6
Q ss_pred CCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEec
Q psy16770 147 TTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVH 189 (554)
Q Consensus 147 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~ 189 (554)
++++||.||++||+.|++..|.+.++.+++++.|+.+..|+++
T Consensus 29 gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~ 71 (167)
T PLN02412 29 GKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCN 71 (167)
T ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEeccc
Confidence 4689999999999999999999999999999878999999874
No 178
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.14 E-value=2.2e-05 Score=67.42 Aligned_cols=100 Identities=13% Similarity=0.186 Sum_probs=70.2
Q ss_pred cccCCcccHHHHHhhhhcCCceEEEEEec--CC---chhHHHHHHhh-ccCCceEEEEEEccC---CCChhHHhHhCCC-
Q psy16770 241 IVPLSATNVDAFLDNWREDNKVHALLFQR--SL---PVRLRYLINAF-KHRTTIVFGVIVYDQ---EDSSSVFQRFKVP- 310 (554)
Q Consensus 241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~--~~---~~~~~~~~~a~-~~~~~v~Fg~v~~~~---~~~~~l~~k~~i~- 310 (554)
+..++++++++++. .++.+++-|.. .- .+....++... .-.+.+.+|.|+|+. ..+.+++++|+|+
T Consensus 3 ~v~L~~~nF~~~v~----~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~ 78 (116)
T cd03007 3 CVDLDTVTFYKVIP----KFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDK 78 (116)
T ss_pred eeECChhhHHHHHh----cCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCc
Confidence 35678999999995 35555555543 11 23444454443 224469999999953 2568899999998
Q ss_pred -CCCceEEEEeCCC-CCCCceeecCC-CChhHHHhHHhcC
Q psy16770 311 -GDKDSLLIFKEDK-DRPSASITMNS-IPVPTLQDITDNN 347 (554)
Q Consensus 311 -~~~Ptlvvfk~~~-~~~~~~i~~~~-~~~~~l~~fi~~~ 347 (554)
+ +|||.+|+++. ..+ ..|.+. .+.+.|.+||+.+
T Consensus 79 ~g-yPTl~lF~~g~~~~~--~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 79 ES-YPVIYLFHGGDFENP--VPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CC-CCEEEEEeCCCcCCC--ccCCCCcccHHHHHHHHHhc
Confidence 6 99999999763 344 457785 8999999999875
No 179
>smart00594 UAS UAS domain.
Probab=98.13 E-value=8.8e-06 Score=71.13 Aligned_cols=86 Identities=13% Similarity=0.107 Sum_probs=64.9
Q ss_pred CCCCcEEEEEEcccccccccchHH-HH--HHHHHhCCCCEEEEEEEecC--cHHHHHHhCCcCCCCcceec-cCC-----
Q psy16770 145 SYTTPHLILFYSDWCFACLQVEPI-FK--KLMDELSPLGVGFFTVHVHN--EQGLARRLGVGSQLPQIALL-TDG----- 213 (554)
Q Consensus 145 ~~~~~~lV~Fya~wC~~C~~l~p~-~~--~~a~~l~~~~v~~~~Vd~~~--~~~l~~~~~v~~~~Pti~~~-~~g----- 213 (554)
..+++++|.|+++||+.|+.+... |. ++.+.++. .+.+..+|.+. ...++++|++.+ +|++.++ .+|
T Consensus 25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~-~fv~~~~dv~~~eg~~l~~~~~~~~-~P~~~~l~~~~g~~~~ 102 (122)
T smart00594 25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE-NFIFWQVDVDTSEGQRVSQFYKLDS-FPYVAIVDPRTGQRVI 102 (122)
T ss_pred hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc-CEEEEEecCCChhHHHHHHhcCcCC-CCEEEEEecCCCceeE
Confidence 467899999999999999997653 32 34555555 47887888765 567999999997 9999998 444
Q ss_pred eEEEEeCCcccHHHHHHHH
Q psy16770 214 RTSFFKEPSFSVQKMVEFF 232 (554)
Q Consensus 214 ~~~~y~~g~~~~~~i~~fl 232 (554)
..+....|..+.++++.++
T Consensus 103 ~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 103 EWVGVVEGEISPEELMTFL 121 (122)
T ss_pred EEeccccCCCCHHHHHHhh
Confidence 2345556777888888775
No 180
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.12 E-value=7.8e-06 Score=74.37 Aligned_cols=42 Identities=12% Similarity=0.064 Sum_probs=38.1
Q ss_pred CCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEec
Q psy16770 147 TTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVH 189 (554)
Q Consensus 147 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~ 189 (554)
+++++|.||+.||+ |....|.++++.+++++.++.+..|+++
T Consensus 22 Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~ 63 (152)
T cd00340 22 GKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN 63 (152)
T ss_pred CCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence 57899999999999 9999999999999998778999988764
No 181
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.12 E-value=2.4e-06 Score=74.70 Aligned_cols=69 Identities=13% Similarity=0.213 Sum_probs=45.7
Q ss_pred CCCCCcEEEEEEcccccccccchHHH---HHHHHHhCCCCEEEEEEEecCc-HHHHHHhCCcCCCCcceec-cCCeEE
Q psy16770 144 KSYTTPHLILFYSDWCFACLQVEPIF---KKLMDELSPLGVGFFTVHVHNE-QGLARRLGVGSQLPQIALL-TDGRTS 216 (554)
Q Consensus 144 ~~~~~~~lV~Fya~wC~~C~~l~p~~---~~~a~~l~~~~v~~~~Vd~~~~-~~l~~~~~v~~~~Pti~~~-~~g~~~ 216 (554)
+..+++++|.||++||++|+.+.... .++++.++. .+.+..++.+.. ..+. ..| .+ +||++++ .+|+++
T Consensus 20 k~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~-~Fv~V~l~~d~td~~~~-~~g-~~-vPtivFld~~g~vi 93 (130)
T cd02960 20 KKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE-DFIMLNLVHETTDKNLS-PDG-QY-VPRIMFVDPSLTVR 93 (130)
T ss_pred HHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh-CeEEEEEEeccCCCCcC-ccC-cc-cCeEEEECCCCCCc
Confidence 35788999999999999999988753 234444533 355556665422 1121 234 66 9999999 566543
No 182
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.10 E-value=1.6e-05 Score=75.16 Aligned_cols=84 Identities=19% Similarity=0.318 Sum_probs=59.0
Q ss_pred CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEec--------------------CcHHHHHHhCCcCCCC
Q psy16770 146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVH--------------------NEQGLARRLGVGSQLP 205 (554)
Q Consensus 146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~--------------------~~~~l~~~~~v~~~~P 205 (554)
.+++++|.||++||+.|+...|.+.++.+... +.+..|..+ ...++++.|++.+ .|
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~---~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~-~P 148 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE---TDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGK-IP 148 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcC---CcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCc-cc
Confidence 45789999999999999999999999887642 333333311 1457788999997 99
Q ss_pred cceec-cCCeEEEEeCCcccHHHHHHHHHH
Q psy16770 206 QIALL-TDGRTSFFKEPSFSVQKMVEFFRL 234 (554)
Q Consensus 206 ti~~~-~~g~~~~y~~g~~~~~~i~~fl~~ 234 (554)
+.+++ ++|+... .+.....+.+.+.+..
T Consensus 149 ~~~lID~~G~I~~-~g~~~~~~~le~ll~~ 177 (189)
T TIGR02661 149 YGVLLDQDGKIRA-KGLTNTREHLESLLEA 177 (189)
T ss_pred eEEEECCCCeEEE-ccCCCCHHHHHHHHHH
Confidence 87776 6787654 3443354666665543
No 183
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.09 E-value=2.2e-05 Score=72.85 Aligned_cols=93 Identities=18% Similarity=0.340 Sum_probs=70.7
Q ss_pred CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC-----------------------------cHHHHH
Q psy16770 146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN-----------------------------EQGLAR 196 (554)
Q Consensus 146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~-----------------------------~~~l~~ 196 (554)
.++++||.||++||+.|....|.+.++.+++++.++.+..|.++. +..+++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 356899999999999999999999999999986678988887653 235677
Q ss_pred HhCCcCCCCcceec-cCCeEEEEe------C---CcccHHHHHHHHHHhCCCC
Q psy16770 197 RLGVGSQLPQIALL-TDGRTSFFK------E---PSFSVQKMVEFFRLKLPYK 239 (554)
Q Consensus 197 ~~~v~~~~Pti~~~-~~g~~~~y~------~---g~~~~~~i~~fl~~~~~~~ 239 (554)
.|++.. .|+++++ ++|+++... + +..+...+.+-|...+...
T Consensus 104 ~~~v~~-~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 155 (171)
T cd02969 104 AYGAAC-TPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGK 155 (171)
T ss_pred HcCCCc-CCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCC
Confidence 899997 9999888 577665331 0 1234577878777766544
No 184
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=98.07 E-value=1.9e-05 Score=67.67 Aligned_cols=103 Identities=14% Similarity=0.096 Sum_probs=68.2
Q ss_pred ccccchhhhhhcCCCCceEEEEEcC----CCCcchhHHHHHHHHHhhccCCCCceEEEEEecccchHHHHhhCCCCCCcc
Q psy16770 353 PRISSQSMLDAVCPVKKLCVVLFSE----DSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPEDSSE 428 (554)
Q Consensus 353 ~~lt~~~~~~~~c~~~~lcvvl~~~----~~~~~~~~~~~l~~~a~~~~~~~~~v~F~~vd~~~q~~~~~~~~~~~~~~~ 428 (554)
.++|.++...-. ..+++++++.. ..++.+++++.++++|++ ++++++.|+|+|.+.....++.| |..+
T Consensus 2 ~~~~~en~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~--fk~gki~Fv~~D~~~~~~~l~~f----gl~~ 73 (111)
T cd03073 2 GHRTKDNRAQFT--KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKD--FPDRKLNFAVADKEDFSHELEEF----GLDF 73 (111)
T ss_pred CeeccchHHHhc--cCCeEEEEEeccccCChhHHHHHHHHHHHHHHH--CcCCeEEEEEEcHHHHHHHHHHc----CCCc
Confidence 345555443322 34566666533 344567899999999999 98334999999998766677766 2111
Q ss_pred ccce--EEEEEEecCCCeeEEEecCCCCCcccccch-hhHHHHHHHHhhh
Q psy16770 429 ISLH--IAAMWRMDYKKIKYGWLLGDAVDDWKDYNT-TKDRLDAGLRSLV 475 (554)
Q Consensus 429 ~~~~--~~~v~~~~~~~~ky~~~~~~~~~~~~~~~~-t~e~l~~fl~~~~ 475 (554)
.+ .|++...+..+.||. +++ +. |.++|.+|+++++
T Consensus 74 --~~~~~P~~~i~~~~~~KY~-~~~---------~~~t~e~i~~F~~~f~ 111 (111)
T cd03073 74 --SGGEKPVVAIRTAKGKKYV-MEE---------EFSDVDALEEFLEDFF 111 (111)
T ss_pred --ccCCCCEEEEEeCCCCccC-CCc---------ccCCHHHHHHHHHHhC
Confidence 13 565555555557996 444 35 8899999999864
No 185
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.07 E-value=2.3e-05 Score=67.96 Aligned_cols=96 Identities=18% Similarity=0.226 Sum_probs=70.3
Q ss_pred cccCCcccHHHHHhhhhcCCceEEEEEecCCc---------hhHHHHHHhhcc--CCceEEEEEEccCCCChhHHhHhCC
Q psy16770 241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLP---------VRLRYLINAFKH--RTTIVFGVIVYDQEDSSSVFQRFKV 309 (554)
Q Consensus 241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~---------~~~~~~~~a~~~--~~~v~Fg~v~~~~~~~~~l~~k~~i 309 (554)
+..+|+++|++.+.+ ...+++++|-.--- ........|+.+ .+.+.|+.+|++ .+.+++++|+|
T Consensus 11 v~~lt~~nF~~~v~~---~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d--~~~~La~~~~I 85 (120)
T cd03065 11 VIDLNEKNYKQVLKK---YDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSK--KDAKVAKKLGL 85 (120)
T ss_pred eeeCChhhHHHHHHh---CCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCC--CCHHHHHHcCC
Confidence 566789999998864 56677777732221 111113334444 677999999998 78999999999
Q ss_pred CCCCceEEEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770 310 PGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDN 346 (554)
Q Consensus 310 ~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~ 346 (554)
.+ .||+++|+++. +. . +.|..+...|.+||+.
T Consensus 86 ~~-iPTl~lfk~G~--~v-~-~~G~~~~~~l~~~l~~ 117 (120)
T cd03065 86 DE-EDSIYVFKDDE--VI-E-YDGEFAADTLVEFLLD 117 (120)
T ss_pred cc-ccEEEEEECCE--EE-E-eeCCCCHHHHHHHHHH
Confidence 97 99999999754 32 2 6788899999999873
No 186
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.05 E-value=2.6e-05 Score=65.34 Aligned_cols=97 Identities=13% Similarity=0.263 Sum_probs=72.3
Q ss_pred ccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----HhhccCCceEEEEEEccCCCChhHHhHhCCCCCCceE
Q psy16770 242 VPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSL 316 (554)
Q Consensus 242 ~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptl 316 (554)
..+|++++++.+.. .+++++++|....-+...... .+..+.+.+.|+.++++ .+..++++|+|.+ .|++
T Consensus 2 ~~lt~~~f~~~i~~---~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~-~Pt~ 75 (103)
T PF00085_consen 2 IVLTDENFEKFINE---SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCD--ENKELCKKYGVKS-VPTI 75 (103)
T ss_dssp EEESTTTHHHHHTT---TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETT--TSHHHHHHTTCSS-SSEE
T ss_pred EECCHHHHHHHHHc---cCCCEEEEEeCCCCCccccccceecccccccccccccchhhhh--ccchhhhccCCCC-CCEE
Confidence 45788999999963 367777777655444333222 22245559999999998 6889999999997 9999
Q ss_pred EEEeCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770 317 LIFKEDKDRPSASITMNSIPVPTLQDITDNN 347 (554)
Q Consensus 317 vvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~ 347 (554)
++|+++... ..+.+.++.+.|.+||+.|
T Consensus 76 ~~~~~g~~~---~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 76 IFFKNGKEV---KRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp EEEETTEEE---EEEESSSSHHHHHHHHHHH
T ss_pred EEEECCcEE---EEEECCCCHHHHHHHHHcC
Confidence 999986543 2567888999999999864
No 187
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.02 E-value=1.9e-05 Score=73.55 Aligned_cols=80 Identities=10% Similarity=0.098 Sum_probs=59.9
Q ss_pred CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEE------EEEEecC-----------------------------
Q psy16770 146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGF------FTVHVHN----------------------------- 190 (554)
Q Consensus 146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~------~~Vd~~~----------------------------- 190 (554)
.+++++|+|||.||+.|+...|.++++++. |+.+ ..||.++
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~----~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~ 133 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAA----KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDD 133 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHc----CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECC
Confidence 478999999999999999999999988543 2333 4444432
Q ss_pred cHHHHHHhCCcCCCCcc-eec-cCCeEEEEeCCcccHHHHHH
Q psy16770 191 EQGLARRLGVGSQLPQI-ALL-TDGRTSFFKEPSFSVQKMVE 230 (554)
Q Consensus 191 ~~~l~~~~~v~~~~Pti-~~~-~~g~~~~y~~g~~~~~~i~~ 230 (554)
+..++..||+.+ +|+. +++ ++|++.....|..+.+++.+
T Consensus 134 ~g~v~~~~gv~~-~P~T~fVIDk~GkVv~~~~G~l~~ee~e~ 174 (184)
T TIGR01626 134 KGAVKNAWQLNS-EDSAIIVLDKTGKVKFVKEGALSDSDIQT 174 (184)
T ss_pred cchHHHhcCCCC-CCceEEEECCCCcEEEEEeCCCCHHHHHH
Confidence 335677899997 9877 455 88998877777767777655
No 188
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.01 E-value=1.1e-05 Score=60.23 Aligned_cols=60 Identities=37% Similarity=0.832 Sum_probs=50.8
Q ss_pred EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHH---HhCCcCCCCcceeccCC
Q psy16770 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLAR---RLGVGSQLPQIALLTDG 213 (554)
Q Consensus 151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~---~~~v~~~~Pti~~~~~g 213 (554)
++.|+++||++|.++.+.+.+. ..... ++.+..+|++.....+. .+++.+ +|+++++..|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNK-GVKFEAVDVDEDPALEKELKRYGVGG-VPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCC-CcEEEEEEcCCChHHhhHHHhCCCcc-ccEEEEEeCC
Confidence 4789999999999999999988 33333 69999999999887765 889997 9999998776
No 189
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.97 E-value=1.5e-05 Score=63.08 Aligned_cols=70 Identities=23% Similarity=0.460 Sum_probs=50.0
Q ss_pred EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHh-----CCcCCCCcceeccCCeEEEEeCCcccH
Q psy16770 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRL-----GVGSQLPQIALLTDGRTSFFKEPSFSV 225 (554)
Q Consensus 151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~-----~v~~~~Pti~~~~~g~~~~y~~g~~~~ 225 (554)
++.|+++||++|+++.+.+++. ++.+-.+|.+++......+ ++.+ +|++ ++.+|.... . .+.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-------~~~~~~idi~~~~~~~~~~~~~~~~~~~-vP~i-~~~~g~~l~---~-~~~ 68 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-------GAAYEWVDIEEDEGAADRVVSVNNGNMT-VPTV-KFADGSFLT---N-PSA 68 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-------CCceEEEeCcCCHhHHHHHHHHhCCCce-eCEE-EECCCeEec---C-CCH
Confidence 5679999999999998877643 4566778988877666653 8886 9997 467775433 2 244
Q ss_pred HHHHHHHH
Q psy16770 226 QKMVEFFR 233 (554)
Q Consensus 226 ~~i~~fl~ 233 (554)
.++.+.++
T Consensus 69 ~~~~~~l~ 76 (77)
T TIGR02200 69 AQVKAKLQ 76 (77)
T ss_pred HHHHHHhh
Confidence 66666553
No 190
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=97.96 E-value=5.7e-05 Score=63.72 Aligned_cols=93 Identities=14% Similarity=0.138 Sum_probs=70.7
Q ss_pred CCcccHHHHHh-hhhcCCceEEEEEecCCchhHHHHHHhh-ccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeC
Q psy16770 244 LSATNVDAFLD-NWREDNKVHALLFQRSLPVRLRYLINAF-KHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKE 321 (554)
Q Consensus 244 ~t~~~~~~fl~-~~~~~~~~~v~~f~~~~~~~~~~~~~a~-~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~ 321 (554)
.+.+++++|+. . ...+++++|.+..++....+..++ .+++++.|+++ .++++.+++++. .|+++++++
T Consensus 6 ~~~~~~e~~~~~~---~~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~-----~~~~~~~~~~~~--~~~i~l~~~ 75 (102)
T cd03066 6 NSERELQAFENIE---DDIKLIGYFKSEDSEHYKAFEEAAEEFHPYIKFFAT-----FDSKVAKKLGLK--MNEVDFYEP 75 (102)
T ss_pred CCHHHHHHHhccc---CCeEEEEEECCCCCHHHHHHHHHHHhhhcCCEEEEE-----CcHHHHHHcCCC--CCcEEEeCC
Confidence 36678999995 3 366667788776777666666665 67799999999 688899999886 689999987
Q ss_pred CCCCCCceee-cCCCChhHHHhHHhcCC
Q psy16770 322 DKDRPSASIT-MNSIPVPTLQDITDNNP 348 (554)
Q Consensus 322 ~~~~~~~~i~-~~~~~~~~l~~fi~~~~ 348 (554)
..+.. ..+ .+.++...|.+||..++
T Consensus 76 ~~e~~--~~y~~g~~~~~~l~~fi~~~~ 101 (102)
T cd03066 76 FMEEP--VTIPDKPYSEEELVDFVEEHK 101 (102)
T ss_pred CCCCC--cccCCCCCCHHHHHHHHHHhc
Confidence 55544 235 66788889999998774
No 191
>KOG0911|consensus
Probab=97.94 E-value=1.7e-05 Score=74.38 Aligned_cols=164 Identities=11% Similarity=0.147 Sum_probs=101.4
Q ss_pred CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCcccH
Q psy16770 146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSV 225 (554)
Q Consensus 146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~ 225 (554)
..+..++.||++||..|+++...++.+++..+ .+.+++++++..+.+|+.+.+.. .|+.+++..|+.+....+...
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~--~~~~~k~~a~~~~eis~~~~v~~-vp~~~~~~~~~~v~~l~~~~~- 91 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK--NAQFLKLEAEEFPEISNLIAVEA-VPYFVFFFLGEKVDRLSGADP- 91 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh--hheeeeehhhhhhHHHHHHHHhc-CceeeeeecchhhhhhhccCc-
Confidence 56788999999999999999999999999883 58999999999999999999997 999999988877665544422
Q ss_pred HHHHHHHH----HhC---CCCccccCCc-----c-cHHHHHhhhhcCCceEEEEEecCC-chhHHHHHH--hhccCCceE
Q psy16770 226 QKMVEFFR----LKL---PYKLIVPLSA-----T-NVDAFLDNWREDNKVHALLFQRSL-PVRLRYLIN--AFKHRTTIV 289 (554)
Q Consensus 226 ~~i~~fl~----~~~---~~~~v~~~t~-----~-~~~~fl~~~~~~~~~~v~~f~~~~-~~~~~~~~~--a~~~~~~v~ 289 (554)
..++.-+. ... +......+.+ + .++.-+... ...++++++..... .|..-+-.. ..-..-.+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~l-v~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~ 170 (227)
T KOG0911|consen 92 PFLVSKVEKLAESGSASLGMGLSTTIRETQTTNETDLDNRLEKL-VKAKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVN 170 (227)
T ss_pred HHHHHHHHHhhhhcccccCCCCCcchhcccccchhhHHHHHHHh-cccCeEEEEecCCCCcccccccHHHHHHHHHcCCC
Confidence 22222222 221 1111111100 0 122233321 23444444443222 222211111 122234566
Q ss_pred EEEEEccCCCChhHHhHhCCCCCCceE
Q psy16770 290 FGVIVYDQEDSSSVFQRFKVPGDKDSL 316 (554)
Q Consensus 290 Fg~v~~~~~~~~~l~~k~~i~~~~Ptl 316 (554)
|+..|.- +++++.+..+.=+++||+
T Consensus 171 ~~~fdIL--~DeelRqglK~fSdWPTf 195 (227)
T KOG0911|consen 171 YTIFDVL--TDEELRQGLKEFSDWPTF 195 (227)
T ss_pred eeEEecc--CCHHHHHHhhhhcCCCCc
Confidence 8888876 788888776654557764
No 192
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.93 E-value=6.5e-05 Score=59.71 Aligned_cols=74 Identities=22% Similarity=0.458 Sum_probs=56.6
Q ss_pred EEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCcccHHHHHHH
Q psy16770 152 ILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEF 231 (554)
Q Consensus 152 V~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~~i~~f 231 (554)
|.+++++|++|..+...+++++..+ ++.+-.+|....+++ .+|||.+ +|++++ ||+. .+.|...+.+.|.+|
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~---~i~~ei~~~~~~~~~-~~ygv~~-vPalvI--ng~~-~~~G~~p~~~el~~~ 74 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEEL---GIEVEIIDIEDFEEI-EKYGVMS-VPALVI--NGKV-VFVGRVPSKEELKEL 74 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHT---TEEEEEEETTTHHHH-HHTT-SS-SSEEEE--TTEE-EEESS--HHHHHHHH
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhc---CCeEEEEEccCHHHH-HHcCCCC-CCEEEE--CCEE-EEEecCCCHHHHHHH
Confidence 4457899999999999999999988 367777887666666 9999997 999955 7764 456646688999888
Q ss_pred HH
Q psy16770 232 FR 233 (554)
Q Consensus 232 l~ 233 (554)
++
T Consensus 75 l~ 76 (76)
T PF13192_consen 75 LE 76 (76)
T ss_dssp HH
T ss_pred hC
Confidence 74
No 193
>KOG1789|consensus
Probab=97.91 E-value=1e-05 Score=89.39 Aligned_cols=56 Identities=32% Similarity=0.490 Sum_probs=47.8
Q ss_pred CCCCCcccccCCCC----CCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCC
Q psy16770 16 AVSLDPYETLGVPR----TASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSD 73 (554)
Q Consensus 16 ~~~~d~y~~Lgv~~----~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~ 73 (554)
....+.|+||.|+- .-..+.||++|++||.+||||||| +..++|.++++|||.|..
T Consensus 1278 mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNP--EGRemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1278 MSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNP--EGREMFERVNKAYELLSS 1337 (2235)
T ss_pred cchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHHHHHHHH
Confidence 34578899999976 334578999999999999999985 567999999999999983
No 194
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.90 E-value=8.8e-05 Score=61.69 Aligned_cols=91 Identities=21% Similarity=0.312 Sum_probs=66.8
Q ss_pred CcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHHhh-ccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCC
Q psy16770 245 SATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAF-KHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDK 323 (554)
Q Consensus 245 t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~a~-~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~ 323 (554)
+.++++.++.. ...+++++|.+..++....+..++ .+++.+.||.+ .+.+++++++++ .|++++|++..
T Consensus 6 s~~~l~~~~~~---~~~~vvg~f~~~~~~~~~~f~~~A~~~r~~~~F~~~-----~~~~~~~~~~~~--~~~i~l~~~~~ 75 (97)
T cd02981 6 SKEELEKFLDK---DDVVVVGFFKDEESEEYKTFEKVAESLRDDYGFGHT-----SDKEVAKKLKVK--PGSVVLFKPFE 75 (97)
T ss_pred CHHHHHHHhcc---CCeEEEEEECCCCcHHHHHHHHHHHhcccCCeEEEE-----ChHHHHHHcCCC--CCceEEeCCcc
Confidence 45667777742 466666677666666666666555 67788999999 678899998876 58999998865
Q ss_pred CCCCceeecCCCChhHHHhHHhcC
Q psy16770 324 DRPSASITMNSIPVPTLQDITDNN 347 (554)
Q Consensus 324 ~~~~~~i~~~~~~~~~l~~fi~~~ 347 (554)
+.+ ..+.+.++...|.+||..|
T Consensus 76 ~~~--~~y~g~~~~~~l~~fi~~~ 97 (97)
T cd02981 76 EEP--VEYDGEFTEESLVEFIKDN 97 (97)
T ss_pred cCC--ccCCCCCCHHHHHHHHHhC
Confidence 544 3467777888999999764
No 195
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=97.89 E-value=4.5e-05 Score=65.40 Aligned_cols=92 Identities=9% Similarity=0.051 Sum_probs=64.9
Q ss_pred ceEEEEEcCCCCcchhHHHHHHHHHhhc-cCCCCceEEEEEecccchHHHHhhCCCCCCccccceEEEEEEecCCC-eeE
Q psy16770 369 KLCVVLFSEDSPEHDASRHTLRRFAQES-RFVHNNIAFMYVFIEKQPEFVNALTSPEDSSEISLHIAAMWRMDYKK-IKY 446 (554)
Q Consensus 369 ~lcvvl~~~~~~~~~~~~~~l~~~a~~~-~~~~~~v~F~~vd~~~q~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~ky 446 (554)
++.++++ ..++.++.++.++++|++- .+++ ++.|+|+|.+.....++.| |... .++|++...+... .||
T Consensus 18 ~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kg-ki~Fv~~d~~~~~~~~~~f----gl~~--~~~P~i~i~~~~~~~Ky 88 (111)
T cd03072 18 PFLILFH--DKDDLESLKEFKQAVARQLISEKG-AINFLTADGDKFRHPLLHL----GKTP--ADLPVIAIDSFRHMYLF 88 (111)
T ss_pred CeEEEEe--cchHHHHHHHHHHHHHHHHHhcCc-eEEEEEEechHhhhHHHHc----CCCH--hHCCEEEEEcchhcCcC
Confidence 4555666 4446788999999999762 3554 5999999998876677766 2111 2566665555544 688
Q ss_pred EEecCCCCCcccccchhhHHHHHHHHhhhcCC
Q psy16770 447 GWLLGDAVDDWKDYNTTKDRLDAGLRSLVNDP 478 (554)
Q Consensus 447 ~~~~~~~~~~~~~~~~t~e~l~~fl~~~~~g~ 478 (554)
.++.+ +.|.++|.+|+++++.|+
T Consensus 89 ~~~~~---------~~t~~~i~~Fv~~~~~Gk 111 (111)
T cd03072 89 PDFED---------VYVPGKLKQFVLDLHSGK 111 (111)
T ss_pred CCCcc---------ccCHHHHHHHHHHHhcCC
Confidence 65444 468899999999999985
No 196
>KOG1672|consensus
Probab=97.88 E-value=1.1e-05 Score=73.68 Aligned_cols=84 Identities=19% Similarity=0.297 Sum_probs=74.2
Q ss_pred ccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccC
Q psy16770 133 THWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTD 212 (554)
Q Consensus 133 t~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~ 212 (554)
+..+|-..+ ....-+++.||-|.-..|+-+-..++.+|+..- +.+|.+||+...|-|+.+++|+- .||+.+|++
T Consensus 73 ~Ekdf~~~~---~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~--eTrFikvnae~~PFlv~kL~IkV-LP~v~l~k~ 146 (211)
T KOG1672|consen 73 SEKDFFEEV---KKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHV--ETRFIKVNAEKAPFLVTKLNIKV-LPTVALFKN 146 (211)
T ss_pred cHHHHHHHh---hcCceEEEEEEcCCCcceehHHHHHHHHHHhcc--cceEEEEecccCceeeeeeeeeE-eeeEEEEEc
Confidence 356666666 355679999999999999999999999999875 48999999999999999999997 999999999
Q ss_pred CeEEEEeCCc
Q psy16770 213 GRTSFFKEPS 222 (554)
Q Consensus 213 g~~~~y~~g~ 222 (554)
|....|.-|.
T Consensus 147 g~~~D~iVGF 156 (211)
T KOG1672|consen 147 GKTVDYVVGF 156 (211)
T ss_pred CEEEEEEeeH
Confidence 9999888765
No 197
>PTZ00256 glutathione peroxidase; Provisional
Probab=97.85 E-value=9.5e-05 Score=69.46 Aligned_cols=41 Identities=7% Similarity=0.089 Sum_probs=35.8
Q ss_pred cEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEec
Q psy16770 149 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVH 189 (554)
Q Consensus 149 ~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~ 189 (554)
++++.+||+||+.|+...|.++++.+++++.|+.+..|+|+
T Consensus 43 vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~ 83 (183)
T PTZ00256 43 AIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCN 83 (183)
T ss_pred EEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence 34566799999999999999999999998778999999874
No 198
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=97.85 E-value=1.4e-05 Score=78.96 Aligned_cols=104 Identities=13% Similarity=0.101 Sum_probs=75.0
Q ss_pred cccccc-cccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCc
Q psy16770 128 HKLSTT-HWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQ 206 (554)
Q Consensus 128 ~~~~Lt-~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pt 206 (554)
.+.+|+ .++|.+.|...+....++|+||.|.++.|..+...+..+|..+.. ++|.+|.+..-+ ++.+|.+.. .||
T Consensus 126 ~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~--vKFvkI~a~~~~-~~~~f~~~~-LPt 201 (265)
T PF02114_consen 126 EVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE--VKFVKIRASKCP-ASENFPDKN-LPT 201 (265)
T ss_dssp SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT--SEEEEEEECGCC-TTTTS-TTC--SE
T ss_pred eEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc--eEEEEEehhccC-cccCCcccC-CCE
Confidence 466775 478888886555567899999999999999999999999999874 899999998765 788999997 999
Q ss_pred ceeccCCeEEEEeCC-------cccHHHHHHHHHHh
Q psy16770 207 IALLTDGRTSFFKEP-------SFSVQKMVEFFRLK 235 (554)
Q Consensus 207 i~~~~~g~~~~y~~g-------~~~~~~i~~fl~~~ 235 (554)
|++|++|..+.-.-+ ..+..+|..|+.+.
T Consensus 202 llvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 202 LLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp EEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred EEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 999999986544322 23445566655543
No 199
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.84 E-value=6.4e-05 Score=72.29 Aligned_cols=81 Identities=25% Similarity=0.450 Sum_probs=64.0
Q ss_pred CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEec-----------CcHHHHHHhCCcCCCCcceecc-CC
Q psy16770 146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVH-----------NEQGLARRLGVGSQLPQIALLT-DG 213 (554)
Q Consensus 146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~-----------~~~~l~~~~~v~~~~Pti~~~~-~g 213 (554)
.++.-|+.||.+.|+.|..+.|.+..+++.+ |+.+..|+.+ .+..+++++||.. +|++.++. ++
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~-~Pal~Lv~~~~ 194 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKY---GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKV-TPALFLVNPNT 194 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHh---CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCc-CCEEEEEECCC
Confidence 4667899999999999999999999999998 3555555555 4689999999996 99999984 33
Q ss_pred -eEEEEeCCcccHHHHHH
Q psy16770 214 -RTSFFKEPSFSVQKMVE 230 (554)
Q Consensus 214 -~~~~y~~g~~~~~~i~~ 230 (554)
+...-.-|..+.++|.+
T Consensus 195 ~~~~pv~~G~~s~~~L~~ 212 (215)
T PF13728_consen 195 KKWYPVSQGFMSLDELED 212 (215)
T ss_pred CeEEEEeeecCCHHHHHH
Confidence 34444446678888865
No 200
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=97.83 E-value=0.00017 Score=60.85 Aligned_cols=96 Identities=8% Similarity=0.085 Sum_probs=65.8
Q ss_pred cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHH-----HHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCce
Q psy16770 241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYL-----INAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDS 315 (554)
Q Consensus 241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~-----~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Pt 315 (554)
+..++.+++++.+.. .++++++.|....-+..+.. ..+.++.+.+.|+.++++ .+.+++++++|.+ .||
T Consensus 3 v~~l~~~~f~~~i~~---~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~i~~-~Pt 76 (104)
T cd03004 3 VITLTPEDFPELVLN---RKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQ--KYESLCQQANIRA-YPT 76 (104)
T ss_pred ceEcCHHHHHHHHhc---CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECC--chHHHHHHcCCCc-ccE
Confidence 456678888888753 35577776654433322211 122245677999999998 6789999999997 999
Q ss_pred EEEEeCCCCCCCceeecCCCC-hhHHHhHH
Q psy16770 316 LLIFKEDKDRPSASITMNSIP-VPTLQDIT 344 (554)
Q Consensus 316 lvvfk~~~~~~~~~i~~~~~~-~~~l~~fi 344 (554)
+++|+++...+ ..+.|..+ .+.|.+||
T Consensus 77 ~~~~~~g~~~~--~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 77 IRLYPGNASKY--HSYNGWHRDADSILEFI 104 (104)
T ss_pred EEEEcCCCCCc--eEccCCCCCHHHHHhhC
Confidence 99998863433 34666666 77777764
No 201
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=97.83 E-value=0.00012 Score=62.05 Aligned_cols=92 Identities=14% Similarity=0.287 Sum_probs=66.4
Q ss_pred CcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHHhh-ccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCC-
Q psy16770 245 SATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAF-KHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKED- 322 (554)
Q Consensus 245 t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~a~-~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~- 322 (554)
+.+++++|+.. .+.+++++|.+..++....+..++ .+++++.|+++ .++++.+++++ . |++++|++.
T Consensus 7 s~~~l~~f~~~---~~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~-----~~~~~~~~~~~-~--~~ivl~~p~~ 75 (104)
T cd03069 7 TEAEFEKFLSD---DDASVVGFFEDEDSKLLSEFLKAADTLRESFRFAHT-----SDKQLLEKYGY-G--EGVVLFRPPR 75 (104)
T ss_pred CHHHHHHHhcc---CCcEEEEEEcCCCchHHHHHHHHHHhhhhcCEEEEE-----ChHHHHHhcCC-C--CceEEEechh
Confidence 55778888853 466667777776666666666555 67799999999 67889999988 3 789999542
Q ss_pred ---CCCCCceeecCCCChhHHHhHHhcC
Q psy16770 323 ---KDRPSASITMNSIPVPTLQDITDNN 347 (554)
Q Consensus 323 ---~~~~~~~i~~~~~~~~~l~~fi~~~ 347 (554)
..+.....+.|+++...|.+||..+
T Consensus 76 ~~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 76 LSNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred hhcccCcccccccCcCCHHHHHHHHHhh
Confidence 1112224578888888999999875
No 202
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=97.82 E-value=3.9e-05 Score=66.76 Aligned_cols=68 Identities=25% Similarity=0.602 Sum_probs=54.2
Q ss_pred CCCcEEEEEEcc-cccccccchHHHHHHHHHhCCCCEEEEEEEecCc---------------------HHHHHHhCCc--
Q psy16770 146 YTTPHLILFYSD-WCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE---------------------QGLARRLGVG-- 201 (554)
Q Consensus 146 ~~~~~lV~Fya~-wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~---------------------~~l~~~~~v~-- 201 (554)
.+++++|.||+. ||++|....+.+.++.++++..++.+..|..+.. ..+++.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 357999999999 9999999999999999999877899999988662 3566667766
Q ss_pred ----CCCCcceec-cCCe
Q psy16770 202 ----SQLPQIALL-TDGR 214 (554)
Q Consensus 202 ----~~~Pti~~~-~~g~ 214 (554)
. +|++.++ ++|+
T Consensus 104 ~~~~~-~p~~~lid~~g~ 120 (124)
T PF00578_consen 104 KDTLA-LPAVFLIDPDGK 120 (124)
T ss_dssp TTSEE-SEEEEEEETTSB
T ss_pred cCCce-EeEEEEECCCCE
Confidence 5 6776666 3443
No 203
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=97.79 E-value=7.1e-05 Score=66.73 Aligned_cols=81 Identities=22% Similarity=0.291 Sum_probs=59.3
Q ss_pred CCcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecC---------------------cHHHHHHhCCcCCC
Q psy16770 147 TTPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN---------------------EQGLARRLGVGSQL 204 (554)
Q Consensus 147 ~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~---------------------~~~l~~~~~v~~~~ 204 (554)
+++++|.|| +.||+.|....|.+.++.+.+...++.+..|..+. +..+++.||+.. .
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~-~ 101 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWG-E 101 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcc-c
Confidence 568899999 58999999999999999988876567777775543 346777788875 7
Q ss_pred ---------Ccceec-cCCeEEEEeCCcccHHHH
Q psy16770 205 ---------PQIALL-TDGRTSFFKEPSFSVQKM 228 (554)
Q Consensus 205 ---------Pti~~~-~~g~~~~y~~g~~~~~~i 228 (554)
|+.+++ ++|++...+.|....+++
T Consensus 102 ~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~ 135 (140)
T cd03017 102 KKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHA 135 (140)
T ss_pred cccccCCcceeEEEECCCCEEEEEEecCCccchH
Confidence 777777 567775555454444444
No 204
>KOG2501|consensus
Probab=97.77 E-value=5e-05 Score=67.83 Aligned_cols=73 Identities=23% Similarity=0.407 Sum_probs=57.7
Q ss_pred CCCcEEEEEEcccccccccchHHHHHHHHHhCCC--CEEEEEEEecC-------------------------cHHHHHHh
Q psy16770 146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPL--GVGFFTVHVHN-------------------------EQGLARRL 198 (554)
Q Consensus 146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~--~v~~~~Vd~~~-------------------------~~~l~~~~ 198 (554)
.++.+.+.|.|.||++|+.+.|..+++.++++.. .+.++-|+.+. .++++++|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 4578999999999999999999999988888743 35666666554 23789999
Q ss_pred CCcCCCCcceec-cCCeEEEEe
Q psy16770 199 GVGSQLPQIALL-TDGRTSFFK 219 (554)
Q Consensus 199 ~v~~~~Pti~~~-~~g~~~~y~ 219 (554)
+|.+ .|++++. .+|..+...
T Consensus 112 ~v~~-iP~l~i~~~dG~~v~~d 132 (157)
T KOG2501|consen 112 EVKG-IPALVILKPDGTVVTED 132 (157)
T ss_pred ccCc-CceeEEecCCCCEehHh
Confidence 9997 9999888 567666554
No 205
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=97.74 E-value=0.00021 Score=60.85 Aligned_cols=95 Identities=18% Similarity=0.270 Sum_probs=65.0
Q ss_pred cccCCcccHHHHHhhhhcCCceEEEEEecCC-------chhHHHHHHhhc--c--CCceEEEEEEccCCCChhHHhHhCC
Q psy16770 241 IVPLSATNVDAFLDNWREDNKVHALLFQRSL-------PVRLRYLINAFK--H--RTTIVFGVIVYDQEDSSSVFQRFKV 309 (554)
Q Consensus 241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~-------~~~~~~~~~a~~--~--~~~v~Fg~v~~~~~~~~~l~~k~~i 309 (554)
+..++.+++++.+. .++++++.|...- .+.+...+..++ + .+.+.|+.++++ .+.+++++|+|
T Consensus 3 v~~l~~~~f~~~i~----~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d--~~~~l~~~~~v 76 (108)
T cd02996 3 IVSLTSGNIDDILQ----SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCD--KESDIADRYRI 76 (108)
T ss_pred eEEcCHhhHHHHHh----cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECC--CCHHHHHhCCC
Confidence 45668889998773 4567777774332 222332322221 2 236899999998 67899999999
Q ss_pred CCCCceEEEEeCCCCCCCceeecCCCChhHHHhHH
Q psy16770 310 PGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDIT 344 (554)
Q Consensus 310 ~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi 344 (554)
.+ +||+++|+++.... ..+.|..+.+.|.+||
T Consensus 77 ~~-~Ptl~~~~~g~~~~--~~~~g~~~~~~l~~fi 108 (108)
T cd02996 77 NK-YPTLKLFRNGMMMK--REYRGQRSVEALAEFV 108 (108)
T ss_pred Cc-CCEEEEEeCCcCcc--eecCCCCCHHHHHhhC
Confidence 97 99999998765322 4566788888888775
No 206
>KOG0723|consensus
Probab=97.74 E-value=4.7e-05 Score=62.36 Aligned_cols=53 Identities=23% Similarity=0.403 Sum_probs=45.8
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCCh
Q psy16770 19 LDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDA 74 (554)
Q Consensus 19 ~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~ 74 (554)
...-.||||+|+++.+.||+|+||.-...|||+..+| -.-.+||||+++|...
T Consensus 56 ~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSP---YlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 56 REAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSP---YLASKINEAKDLLEGT 108 (112)
T ss_pred HHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCH---HHHHHHHHHHHHHhcc
Confidence 3445699999999999999999999999999998665 4567899999999764
No 207
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=97.73 E-value=0.00015 Score=68.30 Aligned_cols=87 Identities=18% Similarity=0.285 Sum_probs=63.3
Q ss_pred CCcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecC-------------------------cHHHHHHhCC
Q psy16770 147 TTPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN-------------------------EQGLARRLGV 200 (554)
Q Consensus 147 ~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~-------------------------~~~l~~~~~v 200 (554)
+++++|.|| +.||+.|....|.+.++.+++++.|+.+..|.++. +..+++.||+
T Consensus 31 Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv 110 (187)
T TIGR03137 31 GKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFGV 110 (187)
T ss_pred CCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhCC
Confidence 458899999 99999999999999999999876667777666542 3467888888
Q ss_pred cC-----CCCcceec-cCCeEEEEe----CCcccHHHHHHHHH
Q psy16770 201 GS-----QLPQIALL-TDGRTSFFK----EPSFSVQKMVEFFR 233 (554)
Q Consensus 201 ~~-----~~Pti~~~-~~g~~~~y~----~g~~~~~~i~~fl~ 233 (554)
.. ..|+..++ ++|++.... ...+..++|.+.++
T Consensus 111 ~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~ 153 (187)
T TIGR03137 111 LIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIK 153 (187)
T ss_pred cccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 61 14877777 678764332 12247777877765
No 208
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=97.71 E-value=0.00039 Score=57.27 Aligned_cols=116 Identities=13% Similarity=0.175 Sum_probs=83.2
Q ss_pred cccccccchhhhhhcCC-CCceEEEEEcC-CCCcchhHHHHHHHHHhhccCCC-CceEEEEEecccchHHHHhhCCCCC-
Q psy16770 350 LTLPRISSQSMLDAVCP-VKKLCVVLFSE-DSPEHDASRHTLRRFAQESRFVH-NNIAFMYVFIEKQPEFVNALTSPED- 425 (554)
Q Consensus 350 ~~v~~lt~~~~~~~~c~-~~~lcvvl~~~-~~~~~~~~~~~l~~~a~~~~~~~-~~v~F~~vd~~~q~~~~~~~~~~~~- 425 (554)
|.+.+++.+++++..-. ..+..+++|.. .+++.-+..+.++++|++ +++ ..+.|+|||-+..+-+....-+..+
T Consensus 1 ptlrkl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~--nt~np~LsiIWIDPD~FPllv~yWektF~I 78 (120)
T cd03074 1 PTLRKLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARD--NTDNPDLSIIWIDPDDFPLLVPYWEKTFGI 78 (120)
T ss_pred CchhhccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHh--cCcCCCceEEEECCccCchhhHHHHhhcCc
Confidence 44567777888876642 23777888874 556778899999999999 764 5699999999988876664433333
Q ss_pred CccccceEEEEEEecCCCeeEEEecCCCCCcccccchhhHHHHHHHHhhh
Q psy16770 426 SSEISLHIAAMWRMDYKKIKYGWLLGDAVDDWKDYNTTKDRLDAGLRSLV 475 (554)
Q Consensus 426 ~~~~~~~~~~v~~~~~~~~ky~~~~~~~~~~~~~~~~t~e~l~~fl~~~~ 475 (554)
... .|++-+|.+.+.+...|.+-+.. ...|.+.|+++|++++
T Consensus 79 Dl~-~PqIGVV~vtdadSvW~~m~~~~-------d~~t~~~Le~WiedVL 120 (120)
T cd03074 79 DLF-RPQIGVVNVTDADSVWMEMDDDE-------DLPTAEELEDWIEDVL 120 (120)
T ss_pred ccC-CCceeeEecccccceeEeccccc-------ccCcHHHHHHHHHhhC
Confidence 221 37888888877777888654431 1258899999999875
No 209
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=97.70 E-value=0.00019 Score=66.74 Aligned_cols=88 Identities=18% Similarity=0.308 Sum_probs=63.3
Q ss_pred CCcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecC----------------------------cHHHHHH
Q psy16770 147 TTPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN----------------------------EQGLARR 197 (554)
Q Consensus 147 ~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~----------------------------~~~l~~~ 197 (554)
+++++|.|| +.||++|....|.+.++++++...++.+..|.++. ...++++
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 108 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISRD 108 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHHH
Confidence 468899999 89999999999999999999876567777776543 2346667
Q ss_pred hCCc------CCCCcceec-cCCeEEEEe----CCcccHHHHHHHHHHh
Q psy16770 198 LGVG------SQLPQIALL-TDGRTSFFK----EPSFSVQKMVEFFRLK 235 (554)
Q Consensus 198 ~~v~------~~~Pti~~~-~~g~~~~y~----~g~~~~~~i~~fl~~~ 235 (554)
||+. . .|+.+++ ++|+..... ...++.++|...++..
T Consensus 109 ~gv~~~~~~~~-~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 109 YGVLDEEEGVA-LRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred hCCccccCCce-eeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 7775 3 5677777 577764444 2224567788877654
No 210
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=97.67 E-value=0.00038 Score=59.09 Aligned_cols=101 Identities=15% Similarity=0.198 Sum_probs=69.0
Q ss_pred cccCCcccHHHHHhhhhcCCceEEEEEecCCchhH-----HHHHHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCce
Q psy16770 241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRL-----RYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDS 315 (554)
Q Consensus 241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~-----~~~~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Pt 315 (554)
+..++.+++++.+.+ .++++++.|....-+.. .+...+..+.+.+.|+.++++...+.+++++|+|.+ .|+
T Consensus 2 v~~l~~~~~~~~i~~---~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~-~Pt 77 (109)
T cd03002 2 VYELTPKNFDKVVHN---TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQG-FPT 77 (109)
T ss_pred eEEcchhhHHHHHhc---CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCc-CCE
Confidence 346778889888864 46666776643322211 111222245677899999998544788999999997 999
Q ss_pred EEEEeCCCC--CCCceeecCCCChhHHHhHHh
Q psy16770 316 LLIFKEDKD--RPSASITMNSIPVPTLQDITD 345 (554)
Q Consensus 316 lvvfk~~~~--~~~~~i~~~~~~~~~l~~fi~ 345 (554)
+++|+++.. ......+.|..+...|.+||.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 78 LKVFRPPKKASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred EEEEeCCCcccccccccccCccCHHHHHHHhC
Confidence 999988652 112245778889989998874
No 211
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=97.66 E-value=0.00047 Score=57.78 Aligned_cols=93 Identities=18% Similarity=0.179 Sum_probs=64.2
Q ss_pred cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHH-----HHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCce
Q psy16770 241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYL-----INAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDS 315 (554)
Q Consensus 241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~-----~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Pt 315 (554)
+..++.+++++.+. ..+++++.|....-+..+.. ..+..+.+.+.|+.++++ .++.++++++|.+ .||
T Consensus 3 ~~~l~~~~f~~~v~----~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~--~~~~~~~~~~v~~-~Pt 75 (101)
T cd03003 3 IVTLDRGDFDAAVN----SGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCG--DDRMLCRSQGVNS-YPS 75 (101)
T ss_pred eEEcCHhhHHHHhc----CCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCC--ccHHHHHHcCCCc-cCE
Confidence 34567888888773 34667776654433322211 122255677999999998 6789999999997 999
Q ss_pred EEEEeCCCCCCCceeecCCCChhHHHhH
Q psy16770 316 LLIFKEDKDRPSASITMNSIPVPTLQDI 343 (554)
Q Consensus 316 lvvfk~~~~~~~~~i~~~~~~~~~l~~f 343 (554)
+++|+++.. . ..+.|..+...|.+|
T Consensus 76 ~~~~~~g~~-~--~~~~G~~~~~~l~~f 100 (101)
T cd03003 76 LYVFPSGMN-P--EKYYGDRSKESLVKF 100 (101)
T ss_pred EEEEcCCCC-c--ccCCCCCCHHHHHhh
Confidence 999986532 2 346777888777765
No 212
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=97.64 E-value=0.00018 Score=67.32 Aligned_cols=42 Identities=12% Similarity=0.068 Sum_probs=37.7
Q ss_pred CCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEec
Q psy16770 147 TTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVH 189 (554)
Q Consensus 147 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~ 189 (554)
++++||.|+|.||+.|++ .|.++++.+++++.|+.+..+.|.
T Consensus 25 GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 25 GNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred CCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeecc
Confidence 578999999999999975 889999999998778999999884
No 213
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=97.60 E-value=0.00024 Score=59.70 Aligned_cols=89 Identities=18% Similarity=0.242 Sum_probs=61.9
Q ss_pred ceEEEEEcC-CCCcchhHHHHHHHHHhhccCCCCceEEEEEecccchHHHHhhCCCCCCccccceEEEEEEecC-CCeeE
Q psy16770 369 KLCVVLFSE-DSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPEDSSEISLHIAAMWRMDY-KKIKY 446 (554)
Q Consensus 369 ~lcvvl~~~-~~~~~~~~~~~l~~~a~~~~~~~~~v~F~~vd~~~q~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~ky 446 (554)
+.++++|.. ..+.+....+.++++|++ +++ +++|+|+|+++++++++.|-.. . ..+|.+...+. ++.+|
T Consensus 13 ~~~~~~f~~~~~~~~~~~~~~~~~vA~~--~~~-~v~f~~vd~~~~~~~~~~~~i~----~--~~~P~~~~~~~~~~~k~ 83 (103)
T cd02982 13 KPLLVLFYNKDDSESEELRERFKEVAKK--FKG-KLLFVVVDADDFGRHLEYFGLK----E--EDLPVIAIINLSDGKKY 83 (103)
T ss_pred CCEEEEEEcCChhhHHHHHHHHHHHHHH--hCC-eEEEEEEchHhhHHHHHHcCCC----h--hhCCEEEEEeccccccc
Confidence 456666664 344678899999999999 974 5999999999989999988211 0 14554433333 35677
Q ss_pred EEecCCCCCcccccchhhHHHHHHHHhhh
Q psy16770 447 GWLLGDAVDDWKDYNTTKDRLDAGLRSLV 475 (554)
Q Consensus 447 ~~~~~~~~~~~~~~~~t~e~l~~fl~~~~ 475 (554)
....+ ..+.+.|.+|+++++
T Consensus 84 ~~~~~---------~~~~~~l~~fi~~~~ 103 (103)
T cd02982 84 LMPEE---------ELTAESLEEFVEDFL 103 (103)
T ss_pred CCCcc---------ccCHHHHHHHHHhhC
Confidence 43322 258899999999864
No 214
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=97.60 E-value=0.00048 Score=58.59 Aligned_cols=95 Identities=18% Similarity=0.264 Sum_probs=66.2
Q ss_pred cCCcccHHHHHhhhhcC-CceEEEEEecCCchhHHHHHHhh-ccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEe
Q psy16770 243 PLSATNVDAFLDNWRED-NKVHALLFQRSLPVRLRYLINAF-KHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFK 320 (554)
Q Consensus 243 ~~t~~~~~~fl~~~~~~-~~~~v~~f~~~~~~~~~~~~~a~-~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk 320 (554)
+.+.++++.|+.. . ..+++++|.+..++....+..++ .+++++.|+++ .+.++.+++++. .|++++|+
T Consensus 5 i~s~~ele~f~~~---~~~~~VVG~F~~~~~~~~~~F~~vA~~~Rdd~~F~~t-----~~~~~~~~~~~~--~~~vvl~r 74 (107)
T cd03068 5 LQTLKQVQEFLRD---GDDVIIIGVFSGEEDPAYQLYQDAANSLREDYKFHHT-----FDSEIFKSLKVS--PGQLVVFQ 74 (107)
T ss_pred cCCHHHHHHHHhc---CCCEEEEEEECCCCCHHHHHHHHHHHhcccCCEEEEE-----ChHHHHHhcCCC--CCceEEEC
Confidence 3356778888853 3 56666677776666556565555 77899999999 678898999987 57899996
Q ss_pred CC----CCCCCceeecCC-CChhH-HHhHHhcC
Q psy16770 321 ED----KDRPSASITMNS-IPVPT-LQDITDNN 347 (554)
Q Consensus 321 ~~----~~~~~~~i~~~~-~~~~~-l~~fi~~~ 347 (554)
+. ..++....+.+. +.... |..||+.|
T Consensus 75 p~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 75 PEKFQSKYEPKSHVLNKKDSTSEDELKDFFKEH 107 (107)
T ss_pred cHHHhhhcCcceeeeeccccchHHHHHHHHhcC
Confidence 51 222333456666 67766 99999865
No 215
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=97.59 E-value=0.00062 Score=57.03 Aligned_cols=96 Identities=18% Similarity=0.194 Sum_probs=66.4
Q ss_pred cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHH-----HHHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCce
Q psy16770 241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRY-----LINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDS 315 (554)
Q Consensus 241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~-----~~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Pt 315 (554)
+..++++++++.+.. ..++++++|....-+..+. ...+..+.+.+.|+.++++ .+.+++++|+|.+ .|+
T Consensus 2 v~~l~~~~~~~~i~~---~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~--~~~~~~~~~~i~~-~P~ 75 (103)
T cd03001 2 VVELTDSNFDKKVLN---SDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDAD--VHQSLAQQYGVRG-FPT 75 (103)
T ss_pred eEEcCHHhHHHHHhc---CCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECc--chHHHHHHCCCCc-cCE
Confidence 345678888888753 3555666664433222221 1223355678999999987 6888999999997 999
Q ss_pred EEEEeCCCCCCCceeecCCCChhHHHhHH
Q psy16770 316 LLIFKEDKDRPSASITMNSIPVPTLQDIT 344 (554)
Q Consensus 316 lvvfk~~~~~~~~~i~~~~~~~~~l~~fi 344 (554)
+++|+++...+ ..+.+..+.+.|.+|+
T Consensus 76 ~~~~~~~~~~~--~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 76 IKVFGAGKNSP--QDYQGGRTAKAIVSAA 102 (103)
T ss_pred EEEECCCCcce--eecCCCCCHHHHHHHh
Confidence 99998763333 4567888888888886
No 216
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=97.58 E-value=0.00039 Score=64.31 Aligned_cols=42 Identities=10% Similarity=0.137 Sum_probs=35.9
Q ss_pred CCcEEEEEEccc-ccccccchHHHHHHHHHhCCCCEEEEEEEecC
Q psy16770 147 TTPHLILFYSDW-CFACLQVEPIFKKLMDELSPLGVGFFTVHVHN 190 (554)
Q Consensus 147 ~~~~lV~Fya~w-C~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~ 190 (554)
+++++|.||+.| |+.|....|.+.++++++. ++.+..|.++.
T Consensus 44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~~~vv~vs~D~ 86 (167)
T PRK00522 44 GKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--NTVVLCISADL 86 (167)
T ss_pred CCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--CcEEEEEeCCC
Confidence 468999999999 9999999999999999884 57777777654
No 217
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=97.56 E-value=0.00071 Score=58.13 Aligned_cols=97 Identities=9% Similarity=0.088 Sum_probs=65.8
Q ss_pred cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHH-----HHHHhhccCCceEEEEEEccCCCChhHH-hHhCCCCCCc
Q psy16770 241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLR-----YLINAFKHRTTIVFGVIVYDQEDSSSVF-QRFKVPGDKD 314 (554)
Q Consensus 241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~-----~~~~a~~~~~~v~Fg~v~~~~~~~~~l~-~k~~i~~~~P 314 (554)
+..++++++++...-- ..++++++.|...-..+.+ +...+..+.+.+.|+.++++ .+.+++ ++|+|.+ +|
T Consensus 11 v~~l~~~~f~~~~~v~-~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d--~~~~l~~~~~~I~~-~P 86 (113)
T cd03006 11 VLDFYKGQLDYAEELR-TDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCW--WPQGKCRKQKHFFY-FP 86 (113)
T ss_pred eEEechhhhHHHHhcc-cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECC--CChHHHHHhcCCcc-cC
Confidence 6677888888873211 3566777766443322222 11222245677999999998 677888 5899997 99
Q ss_pred eEEEEeCCCCCCCceeecCCCChhHHHhHH
Q psy16770 315 SLLIFKEDKDRPSASITMNSIPVPTLQDIT 344 (554)
Q Consensus 315 tlvvfk~~~~~~~~~i~~~~~~~~~l~~fi 344 (554)
|+++|+++.. + ..+.|..+...|..|+
T Consensus 87 Tl~lf~~g~~-~--~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 87 VIHLYYRSRG-P--IEYKGPMRAPYMEKFV 113 (113)
T ss_pred EEEEEECCcc-c--eEEeCCCCHHHHHhhC
Confidence 9999987543 3 4577888888887763
No 218
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.55 E-value=0.00067 Score=57.76 Aligned_cols=104 Identities=15% Similarity=0.204 Sum_probs=73.3
Q ss_pred cccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHH-HHhC-CCCEEEEEEEecC-----cHHHHHHhCC
Q psy16770 128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLM-DELS-PLGVGFFTVHVHN-----EQGLARRLGV 200 (554)
Q Consensus 128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a-~~l~-~~~v~~~~Vd~~~-----~~~l~~~~~v 200 (554)
..+.|+.-+|++.| +..+.+||.|=... +--.-..+|.++| +..+ ...+-+|.|-... |.+|+++|+|
T Consensus 5 G~v~LD~~tFdKvi---~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i 79 (126)
T PF07912_consen 5 GCVPLDELTFDKVI---PKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKI 79 (126)
T ss_dssp TSEEESTTHHHHHG---GGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-
T ss_pred ceeeccceehhhee---ccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCC
Confidence 36788899999999 46789999995322 2333456788888 4444 2358888887654 7899999999
Q ss_pred cC-CCCcceeccCC--eEEEE--eCCcccHHHHHHHHHHhCC
Q psy16770 201 GS-QLPQIALLTDG--RTSFF--KEPSFSVQKMVEFFRLKLP 237 (554)
Q Consensus 201 ~~-~~Pti~~~~~g--~~~~y--~~g~~~~~~i~~fl~~~~~ 237 (554)
.. .||.+++|..| .++.| .+. .++++|..|+..+.+
T Consensus 80 ~ke~fPv~~LF~~~~~~pv~~p~~~~-~t~~~l~~fvk~~t~ 120 (126)
T PF07912_consen 80 DKEDFPVIYLFVGDKEEPVRYPFDGD-VTADNLQRFVKSNTG 120 (126)
T ss_dssp SCCC-SEEEEEESSTTSEEEE-TCS--S-HHHHHHHHHHTSS
T ss_pred CcccCCEEEEecCCCCCCccCCccCC-ccHHHHHHHHHhCCC
Confidence 65 49999999743 35666 444 588999999998865
No 219
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=97.54 E-value=0.00031 Score=63.16 Aligned_cols=47 Identities=28% Similarity=0.429 Sum_probs=38.1
Q ss_pred CcEEEEE-EcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHH
Q psy16770 148 TPHLILF-YSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGL 194 (554)
Q Consensus 148 ~~~lV~F-ya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l 194 (554)
++++|.| ++.||+.|+...|.+.++.++++..++.+..|..+.....
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~ 71 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKL 71 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHH
Confidence 4555555 5999999999999999999999766799999988765443
No 220
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.51 E-value=0.00013 Score=58.81 Aligned_cols=71 Identities=17% Similarity=0.423 Sum_probs=49.5
Q ss_pred EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcH-----HHHHHhCCcCCCCcceeccCCeEEEEeCCcccH
Q psy16770 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQ-----GLARRLGVGSQLPQIALLTDGRTSFFKEPSFSV 225 (554)
Q Consensus 151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~-----~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~ 225 (554)
++.|+++||++|+++.+.+.+.. ..+ .+.+..||.+.+. .+.+..|+.+ +|++ |.+|+. .||.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~-~~~~~~v~~~~~~~~~~~~l~~~~g~~~-vP~v--~i~g~~---igg~--- 68 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP-AYEVVELDQLSNGSEIQDYLEEITGQRT-VPNI--FINGKF---IGGC--- 68 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC-CCEEEEeeCCCChHHHHHHHHHHhCCCC-CCeE--EECCEE---EcCH---
Confidence 46799999999999999988765 222 2667777766543 3667789997 9997 446753 4553
Q ss_pred HHHHHHHH
Q psy16770 226 QKMVEFFR 233 (554)
Q Consensus 226 ~~i~~fl~ 233 (554)
+++.+..+
T Consensus 69 ~~~~~~~~ 76 (84)
T TIGR02180 69 SDLLALYK 76 (84)
T ss_pred HHHHHHHH
Confidence 55655544
No 221
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=97.50 E-value=0.00094 Score=55.62 Aligned_cols=93 Identities=18% Similarity=0.221 Sum_probs=64.4
Q ss_pred CcccHHHHHhhhhcCCceEEEEEecCCchhH-------HHHHHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCceEE
Q psy16770 245 SATNVDAFLDNWREDNKVHALLFQRSLPVRL-------RYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLL 317 (554)
Q Consensus 245 t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~-------~~~~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlv 317 (554)
+.+++++.+. .++++++.|....-+.. ...+..+...+.+.|+.++++ .+..++++|+|.. .|+++
T Consensus 2 ~~~~~~~~~~----~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~~i~~-~P~~~ 74 (102)
T TIGR01126 2 TASNFDDIVL----SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDAT--AEKDLASRFGVSG-FPTIK 74 (102)
T ss_pred chhhHHHHhc----cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEcc--chHHHHHhCCCCc-CCEEE
Confidence 5567777763 46677777744333322 222222222226899999987 6889999999997 99999
Q ss_pred EEeCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770 318 IFKEDKDRPSASITMNSIPVPTLQDITDNN 347 (554)
Q Consensus 318 vfk~~~~~~~~~i~~~~~~~~~l~~fi~~~ 347 (554)
+|+++.. + ..+.|..+...|..||+.+
T Consensus 75 ~~~~~~~-~--~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 75 FFPKGKK-P--VDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred EecCCCc-c--eeecCCCCHHHHHHHHHhc
Confidence 9998655 3 4577888888899999864
No 222
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.49 E-value=0.0039 Score=69.00 Aligned_cols=180 Identities=12% Similarity=0.131 Sum_probs=116.8
Q ss_pred CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceecc-CCeE--EEEeCCc
Q psy16770 146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLT-DGRT--SFFKEPS 222 (554)
Q Consensus 146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~-~g~~--~~y~~g~ 222 (554)
.+.+.|+.|+.+.|..|..+....++++. +.+ .+.+...|..++.+++++|++.. .|++.++. +|+. +.|+|-+
T Consensus 365 ~~~v~l~~~~~~~~~~~~e~~~~l~e~~~-~s~-~i~~~~~~~~~~~~~~~~~~v~~-~P~~~i~~~~~~~~~i~f~g~P 441 (555)
T TIGR03143 365 ENPVTLLLFLDGSNEKSAELQSFLGEFAS-LSE-KLNSEAVNRGEEPESETLPKITK-LPTVALLDDDGNYTGLKFHGVP 441 (555)
T ss_pred CCCEEEEEEECCCchhhHHHHHHHHHHHh-cCC-cEEEEEeccccchhhHhhcCCCc-CCEEEEEeCCCcccceEEEecC
Confidence 34456888889899999998888888874 444 48888899999999999999995 99999984 5542 6777643
Q ss_pred ccHHHHHHHHH---HhCCCCccccCCcccHHHHHhhhhcCCceEEEEEecCCc---hhHHHHHHhh-ccCCceEEEEEEc
Q psy16770 223 FSVQKMVEFFR---LKLPYKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLP---VRLRYLINAF-KHRTTIVFGVIVY 295 (554)
Q Consensus 223 ~~~~~i~~fl~---~~~~~~~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~---~~~~~~~~a~-~~~~~v~Fg~v~~ 295 (554)
.=.++..|+. ...++. ..++++..+ .+... +.+..+-+|-...- +........+ ...+++..-.++.
T Consensus 442 -~G~Ef~s~i~~i~~~~~~~--~~l~~~~~~-~i~~~--~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~ 515 (555)
T TIGR03143 442 -SGHELNSFILALYNAAGPG--QPLGEELLE-KIKKI--TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDV 515 (555)
T ss_pred -ccHhHHHHHHHHHHhcCCC--CCCCHHHHH-HHHhc--CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEEC
Confidence 3355555554 444333 234444443 44332 23333445422211 2222222222 3345788888887
Q ss_pred cCCCChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCCCChhHHHhHH
Q psy16770 296 DQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDIT 344 (554)
Q Consensus 296 ~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi 344 (554)
+ ..++++++|+|.+ .|++++ +.+ .+..|..+.+.+.+||
T Consensus 516 ~--~~~~~~~~~~v~~-vP~~~i---~~~----~~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 516 S--HFPDLKDEYGIMS-VPAIVV---DDQ----QVYFGKKTIEEMLELI 554 (555)
T ss_pred c--ccHHHHHhCCcee-cCEEEE---CCE----EEEeeCCCHHHHHHhh
Confidence 7 6889999999997 999987 122 3455666777777665
No 223
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=97.48 E-value=0.00045 Score=62.77 Aligned_cols=75 Identities=21% Similarity=0.300 Sum_probs=53.5
Q ss_pred CCcEEEEEEcc-cccccccchHHHHHHHHHhCCCCEEEEEEEecC---------------------cHHHHHHhCCcCCC
Q psy16770 147 TTPHLILFYSD-WCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN---------------------EQGLARRLGVGSQL 204 (554)
Q Consensus 147 ~~~~lV~Fya~-wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~---------------------~~~l~~~~~v~~~~ 204 (554)
+++++|.||+. ||+.|....+.+.++.+.+++.++.+..|..+. ...++++||+.. .
T Consensus 30 gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~-~ 108 (154)
T PRK09437 30 GQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWG-E 108 (154)
T ss_pred CCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCc-c
Confidence 46899999975 688899999999999999887678888777654 235666777653 3
Q ss_pred ------------Ccceec-cCCeEEEEeCCc
Q psy16770 205 ------------PQIALL-TDGRTSFFKEPS 222 (554)
Q Consensus 205 ------------Pti~~~-~~g~~~~y~~g~ 222 (554)
|+.+++ ++|++...+.|.
T Consensus 109 ~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~ 139 (154)
T PRK09437 109 KKFMGKTYDGIHRISFLIDADGKIEHVFDKF 139 (154)
T ss_pred cccccccccCcceEEEEECCCCEEEEEEcCC
Confidence 444455 577765555443
No 224
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=97.47 E-value=0.0008 Score=63.27 Aligned_cols=88 Identities=17% Similarity=0.292 Sum_probs=65.3
Q ss_pred CCcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecC-------------------------cHHHHHHhCC
Q psy16770 147 TTPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN-------------------------EQGLARRLGV 200 (554)
Q Consensus 147 ~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~-------------------------~~~l~~~~~v 200 (554)
++++++.|| +.||+.|....+.+.+..++++..++.+..|.++. +..++++||+
T Consensus 31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv 110 (187)
T PRK10382 31 GRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDN 110 (187)
T ss_pred CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcCC
Confidence 457889999 99999999999999999999876667776666543 3478889998
Q ss_pred ----cCCC--Ccceec-cCCeEEEEe----CCcccHHHHHHHHHHh
Q psy16770 201 ----GSQL--PQIALL-TDGRTSFFK----EPSFSVQKMVEFFRLK 235 (554)
Q Consensus 201 ----~~~~--Pti~~~-~~g~~~~y~----~g~~~~~~i~~fl~~~ 235 (554)
.+ . |+..++ ++|++.... +..++.+++...+...
T Consensus 111 ~~~~~g-~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~al 155 (187)
T PRK10382 111 MREDEG-LADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA 155 (187)
T ss_pred CcccCC-ceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence 34 5 888777 578763322 2235788888877544
No 225
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.00071 Score=59.77 Aligned_cols=84 Identities=18% Similarity=0.313 Sum_probs=64.4
Q ss_pred CCCCcEEEEEEcccccccccchHHHH---HHHHHhCCCCEEEEEEEecC----------------cHHHHHHhCCcCCCC
Q psy16770 145 SYTTPHLILFYSDWCFACLQVEPIFK---KLMDELSPLGVGFFTVHVHN----------------EQGLARRLGVGSQLP 205 (554)
Q Consensus 145 ~~~~~~lV~Fya~wC~~C~~l~p~~~---~~a~~l~~~~v~~~~Vd~~~----------------~~~l~~~~~v~~~~P 205 (554)
..++..+++|-++.|..|.++..... ++.+.+++. +.+..+|.+. .++|+++++|++ +|
T Consensus 40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~h-f~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrs-tP 117 (182)
T COG2143 40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEH-FSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRS-TP 117 (182)
T ss_pred ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhC-eEEEEEEeccCcceEeecCceeeeecHHHHHHHhcccc-Cc
Confidence 46788999999999999999876433 334445542 6666666543 458999999997 99
Q ss_pred cceec-cCCeEEEEeCCcccHHHHHH
Q psy16770 206 QIALL-TDGRTSFFKEPSFSVQKMVE 230 (554)
Q Consensus 206 ti~~~-~~g~~~~y~~g~~~~~~i~~ 230 (554)
|+++| ++|+.+-+-.|....+.+..
T Consensus 118 tfvFfdk~Gk~Il~lPGY~ppe~Fl~ 143 (182)
T COG2143 118 TFVFFDKTGKTILELPGYMPPEQFLA 143 (182)
T ss_pred eEEEEcCCCCEEEecCCCCCHHHHHH
Confidence 99999 77888888888888777654
No 226
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.45 E-value=0.00048 Score=55.93 Aligned_cols=77 Identities=22% Similarity=0.423 Sum_probs=57.3
Q ss_pred EEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcH----HHHHHhC--CcCCCCcceeccCCeEEEEeCCcc
Q psy16770 150 HLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQ----GLARRLG--VGSQLPQIALLTDGRTSFFKEPSF 223 (554)
Q Consensus 150 ~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~----~l~~~~~--v~~~~Pti~~~~~g~~~~y~~g~~ 223 (554)
-++.|+.+||++|++....++++..++. ++.+..+|.+.+. ++.+..+ +.+ +|++. .+|+. .||.
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~--~i~~~~idi~~~~~~~~el~~~~~~~~~~-vP~if--i~g~~---igg~- 72 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERD--DFDYRYVDIHAEGISKADLEKTVGKPVET-VPQIF--VDQKH---IGGC- 72 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhccccc--CCcEEEEECCCChHHHHHHHHHHCCCCCc-CCEEE--ECCEE---EcCH-
Confidence 3678999999999999999999887664 5788888888653 4555555 466 99975 47754 4554
Q ss_pred cHHHHHHHHHHhCC
Q psy16770 224 SVQKMVEFFRLKLP 237 (554)
Q Consensus 224 ~~~~i~~fl~~~~~ 237 (554)
++|.++++..++
T Consensus 73 --~~~~~~~~~~~~ 84 (85)
T PRK11200 73 --TDFEAYVKENLG 84 (85)
T ss_pred --HHHHHHHHHhcc
Confidence 788888876643
No 227
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.44 E-value=0.00055 Score=67.15 Aligned_cols=86 Identities=20% Similarity=0.312 Sum_probs=65.6
Q ss_pred CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC-----------cHHHHHHhCCcCCCCcceec-cC-
Q psy16770 146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN-----------EQGLARRLGVGSQLPQIALL-TD- 212 (554)
Q Consensus 146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~-----------~~~l~~~~~v~~~~Pti~~~-~~- 212 (554)
.++.-|+.||...|++|.++.|..+.+++.+ |+.+..|+.+. +..+++++||.. +|++.+. .+
T Consensus 149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~y---gi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~-~Pal~Lv~~~t 224 (256)
T TIGR02739 149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKEY---GISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKY-FPALYLVNPKS 224 (256)
T ss_pred HhceeEEEEECCCCchhHHHHHHHHHHHHHh---CCeEEEEecCCCCCCCCCCccCChHHHHhcCCcc-CceEEEEECCC
Confidence 4557899999999999999999999999988 35555555554 367999999996 9999988 33
Q ss_pred CeEEEEeCCcccHHHHHHHHHHh
Q psy16770 213 GRTSFFKEPSFSVQKMVEFFRLK 235 (554)
Q Consensus 213 g~~~~y~~g~~~~~~i~~fl~~~ 235 (554)
++...---|..+.++|.+=+...
T Consensus 225 ~~~~pv~~G~iS~deL~~Ri~~v 247 (256)
T TIGR02739 225 QKMSPLAYGFISQDELKERILNV 247 (256)
T ss_pred CcEEEEeeccCCHHHHHHHHHHH
Confidence 34433334677889887766543
No 228
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=97.37 E-value=0.0013 Score=55.02 Aligned_cols=95 Identities=18% Similarity=0.265 Sum_probs=63.7
Q ss_pred ccCCcccHHHHHhhhhcCCceEEEEEecCCchh-------HHHHHHhhccCCceEEEEEEccCCC-ChhHHhHhCCCCCC
Q psy16770 242 VPLSATNVDAFLDNWREDNKVHALLFQRSLPVR-------LRYLINAFKHRTTIVFGVIVYDQED-SSSVFQRFKVPGDK 313 (554)
Q Consensus 242 ~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~-------~~~~~~a~~~~~~v~Fg~v~~~~~~-~~~l~~k~~i~~~~ 313 (554)
..++.+++++.+.. ..+++++.|....-+. +...+......+.+.|+.++++ . ...++++|+|.+ .
T Consensus 3 ~~l~~~~~~~~~~~---~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~--~~~~~~~~~~~i~~-~ 76 (105)
T cd02998 3 VELTDSNFDKVVGD---DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDAD--EANKDLAKKYGVSG-F 76 (105)
T ss_pred EEcchhcHHHHhcC---CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECC--CcchhhHHhCCCCC-c
Confidence 35567788776643 4556777664433332 2222222222357899999887 5 789999999997 9
Q ss_pred ceEEEEeCCCCCCCceeecCCCChhHHHhHH
Q psy16770 314 DSLLIFKEDKDRPSASITMNSIPVPTLQDIT 344 (554)
Q Consensus 314 Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi 344 (554)
|++++|+++.... ..+.+..+.+.|.+||
T Consensus 77 P~~~~~~~~~~~~--~~~~g~~~~~~l~~~i 105 (105)
T cd02998 77 PTLKFFPKGSTEP--VKYEGGRDLEDLVKFV 105 (105)
T ss_pred CEEEEEeCCCCCc--cccCCccCHHHHHhhC
Confidence 9999998764333 4577788888888775
No 229
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=97.32 E-value=0.00071 Score=60.96 Aligned_cols=43 Identities=12% Similarity=0.357 Sum_probs=36.4
Q ss_pred CcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecC
Q psy16770 148 TPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN 190 (554)
Q Consensus 148 ~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~ 190 (554)
++++|.|| +.||+.|....|.++++.++++..++.+..|..+.
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~ 72 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDS 72 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCC
Confidence 57777777 99999999999999999999976678888887654
No 230
>PRK13190 putative peroxiredoxin; Provisional
Probab=97.28 E-value=0.0011 Score=63.35 Aligned_cols=86 Identities=14% Similarity=0.274 Sum_probs=62.1
Q ss_pred cEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC---------------------------cHHHHHHhCCc
Q psy16770 149 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN---------------------------EQGLARRLGVG 201 (554)
Q Consensus 149 ~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~---------------------------~~~l~~~~~v~ 201 (554)
.+|+.|+++||+.|....+.+.+..++++..|+.+..|.++. +..+++.||+.
T Consensus 30 vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ygv~ 109 (202)
T PRK13190 30 VLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREYNLI 109 (202)
T ss_pred EEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHcCCc
Confidence 344468999999999999999999888876667776665542 34677788873
Q ss_pred ------CCCCcceec-cCCeEEEEe----CCcccHHHHHHHHHHh
Q psy16770 202 ------SQLPQIALL-TDGRTSFFK----EPSFSVQKMVEFFRLK 235 (554)
Q Consensus 202 ------~~~Pti~~~-~~g~~~~y~----~g~~~~~~i~~fl~~~ 235 (554)
. +|+..++ .+|++.... ...++.+++...+...
T Consensus 110 ~~~~g~~-~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l 153 (202)
T PRK13190 110 DENSGAT-VRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKAL 153 (202)
T ss_pred cccCCcE-EeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 3 7888888 577654322 2235889998888754
No 231
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=97.28 E-value=0.00075 Score=60.19 Aligned_cols=44 Identities=20% Similarity=0.332 Sum_probs=38.0
Q ss_pred CCcEEEEEEcccccc-cccchHHHHHHHHHhCCCC---EEEEEEEecC
Q psy16770 147 TTPHLILFYSDWCFA-CLQVEPIFKKLMDELSPLG---VGFFTVHVHN 190 (554)
Q Consensus 147 ~~~~lV~Fya~wC~~-C~~l~p~~~~~a~~l~~~~---v~~~~Vd~~~ 190 (554)
+++++|.||++||+. |.+..+.+.++.++++..+ +.+..|..+.
T Consensus 22 gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~ 69 (142)
T cd02968 22 GKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP 69 (142)
T ss_pred CCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence 568999999999997 9999999999999997643 8888888753
No 232
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.23 E-value=0.00087 Score=51.94 Aligned_cols=67 Identities=16% Similarity=0.306 Sum_probs=45.6
Q ss_pred EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHh----CCcCCCCcceeccCCeEEEEeCCcccHH
Q psy16770 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRL----GVGSQLPQIALLTDGRTSFFKEPSFSVQ 226 (554)
Q Consensus 151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~----~v~~~~Pti~~~~~g~~~~y~~g~~~~~ 226 (554)
++.|+++||++|.++...+++ .++.+..+|.+.+......+ ++.+ +|++.+ +|+ ..+|. +.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-------~~i~~~~~~i~~~~~~~~~~~~~~~~~~-vP~i~~--~~~---~i~g~-~~~ 67 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-------RGIPFEEVDVDEDPEALEELKKLNGYRS-VPVVVI--GDE---HLSGF-RPD 67 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-------CCCCeEEEeCCCCHHHHHHHHHHcCCcc-cCEEEE--CCE---EEecC-CHH
Confidence 567999999999998776664 25677788887766554444 6776 999976 443 22343 456
Q ss_pred HHHHH
Q psy16770 227 KMVEF 231 (554)
Q Consensus 227 ~i~~f 231 (554)
.|.++
T Consensus 68 ~l~~~ 72 (73)
T cd02976 68 KLRAL 72 (73)
T ss_pred HHHhh
Confidence 66654
No 233
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=97.21 E-value=0.0032 Score=53.60 Aligned_cols=85 Identities=16% Similarity=0.184 Sum_probs=59.3
Q ss_pred HHHHHHHhCCCCccccCCcccHHHHHhhhhcCCceEEEEEecCC--chhHHHHH-----HhhccCCceEEEEEEccCCCC
Q psy16770 228 MVEFFRLKLPYKLIVPLSATNVDAFLDNWREDNKVHALLFQRSL--PVRLRYLI-----NAFKHRTTIVFGVIVYDQEDS 300 (554)
Q Consensus 228 i~~fl~~~~~~~~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~--~~~~~~~~-----~a~~~~~~v~Fg~v~~~~~~~ 300 (554)
+++++....+-+ .++..+++++++ .+.++|+.|.... -++.+... .+.++.+.+.|+.++++ .+
T Consensus 2 ~~~~~~~~~~~~---~~~~~~~~~~~~----~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid--~~ 72 (111)
T cd02965 2 LVARLQTRHGWP---RVDAATLDDWLA----AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRA--DE 72 (111)
T ss_pred HhHHHHHhcCCc---ccccccHHHHHh----CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECC--CC
Confidence 355666555533 567889998883 4566677775442 33322222 23366678999999988 67
Q ss_pred hhHHhHhCCCCCCceEEEEeCC
Q psy16770 301 SSVFQRFKVPGDKDSLLIFKED 322 (554)
Q Consensus 301 ~~l~~k~~i~~~~Ptlvvfk~~ 322 (554)
++++.+|+|.+ .||+++|+++
T Consensus 73 ~~la~~f~V~s-IPTli~fkdG 93 (111)
T cd02965 73 QALAARFGVLR-TPALLFFRDG 93 (111)
T ss_pred HHHHHHcCCCc-CCEEEEEECC
Confidence 89999999997 9999999975
No 234
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.18 E-value=0.0017 Score=63.40 Aligned_cols=88 Identities=22% Similarity=0.223 Sum_probs=63.9
Q ss_pred CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC---------cHHHHHHhCCcCCCCcceecc--CCe
Q psy16770 146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN---------EQGLARRLGVGSQLPQIALLT--DGR 214 (554)
Q Consensus 146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~---------~~~l~~~~~v~~~~Pti~~~~--~g~ 214 (554)
.++.-|+.||...|++|.+++|..+.+++.++ ..+..+.+|..- +...++++||.. +|++.+.. .++
T Consensus 142 a~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg-~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~-~PAl~Lv~~~t~~ 219 (248)
T PRK13703 142 AEHYGLMFFYRGQDPIDGQLAQVINDFRDTYG-LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKY-FPALMLVDPKSGS 219 (248)
T ss_pred HhcceEEEEECCCCchhHHHHHHHHHHHHHhC-CeEEEEecCCCCCCCCCCCccChhHHHhcCCcc-cceEEEEECCCCc
Confidence 35578999999999999999999999999983 224444444322 456788999996 99999983 234
Q ss_pred EEEEeCCcccHHHHHHHHHHh
Q psy16770 215 TSFFKEPSFSVQKMVEFFRLK 235 (554)
Q Consensus 215 ~~~y~~g~~~~~~i~~fl~~~ 235 (554)
...---|..+.++|.+=+...
T Consensus 220 ~~pv~~G~iS~deL~~Ri~~v 240 (248)
T PRK13703 220 VRPLSYGFITQDDLAKRFLNV 240 (248)
T ss_pred EEEEeeccCCHHHHHHHHHHH
Confidence 443344667888887665543
No 235
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.17 E-value=0.00054 Score=59.04 Aligned_cols=77 Identities=22% Similarity=0.449 Sum_probs=50.6
Q ss_pred ccccccccC-CCCCCcEEEEEEc-------ccccccccchHHHHHHHHHhCCCCEEEEEEEecCcH-------HHHH--H
Q psy16770 135 WNFEKNYIP-KSYTTPHLILFYS-------DWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQ-------GLAR--R 197 (554)
Q Consensus 135 ~~F~~~v~~-~~~~~~~lV~Fya-------~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~-------~l~~--~ 197 (554)
++|.+.+.. .+.+++++|.|++ +||+.|....|..+++...... +..++.|.++..+ ..-. +
T Consensus 6 ~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~-~~~lv~v~VG~r~~Wkdp~n~fR~~p~ 84 (119)
T PF06110_consen 6 DEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE-NARLVYVEVGDRPEWKDPNNPFRTDPD 84 (119)
T ss_dssp HHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST-TEEEEEEE---HHHHC-TTSHHHH--C
T ss_pred HHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC-CceEEEEEcCCHHHhCCCCCCceEcce
Confidence 344444432 2345788888985 4999999999999998888654 6899988886532 2333 5
Q ss_pred hCCcCCCCcceeccCC
Q psy16770 198 LGVGSQLPQIALLTDG 213 (554)
Q Consensus 198 ~~v~~~~Pti~~~~~g 213 (554)
+++++ +|||+-+..+
T Consensus 85 ~~l~~-IPTLi~~~~~ 99 (119)
T PF06110_consen 85 LKLKG-IPTLIRWETG 99 (119)
T ss_dssp C---S-SSEEEECTSS
T ss_pred eeeee-cceEEEECCC
Confidence 89997 9999999776
No 236
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.17 E-value=0.0035 Score=55.04 Aligned_cols=114 Identities=13% Similarity=0.104 Sum_probs=73.7
Q ss_pred HHHHHHHHHhCCCCccccCCcccHHHHHhhhhcCCceEEEEEecCCc--h---h--HHHHHHhhccC-CceEEEEEEccC
Q psy16770 226 QKMVEFFRLKLPYKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLP--V---R--LRYLINAFKHR-TTIVFGVIVYDQ 297 (554)
Q Consensus 226 ~~i~~fl~~~~~~~~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~--~---~--~~~~~~a~~~~-~~v~Fg~v~~~~ 297 (554)
..|++-+... +- ..++..+++.|+. .....|+++..... + . ...-..+.++. .+++|+.++.+
T Consensus 8 ~~l~~rl~~~-g~---~~~~~~~~~~~~~----~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD- 78 (132)
T PRK11509 8 DALWQRMLAR-GW---TPVSESRLDDWLT----QAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLE- 78 (132)
T ss_pred HHHHHHHHHc-CC---CccccccHHHHHh----CCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECC-
Confidence 3454545443 33 3455688999985 35567777743321 1 1 11122233555 45999999988
Q ss_pred CCChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCCCChhHHHhHHhcCCCcccc
Q psy16770 298 EDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTLP 353 (554)
Q Consensus 298 ~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~~~~~v~ 353 (554)
.+++++.+|+|.+ .||+++|+++..- ....|-.+...+.+||+..--...|
T Consensus 79 -~~~~LA~~fgV~s-iPTLl~FkdGk~v---~~i~G~~~k~~l~~~I~~~L~~~~~ 129 (132)
T PRK11509 79 -QSEAIGDRFGVFR-FPATLVFTGGNYR---GVLNGIHPWAELINLMRGLVEPQQE 129 (132)
T ss_pred -CCHHHHHHcCCcc-CCEEEEEECCEEE---EEEeCcCCHHHHHHHHHHHhcCcCc
Confidence 7899999999997 9999999985442 2345667888899998865444333
No 237
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=97.16 E-value=0.003 Score=52.67 Aligned_cols=92 Identities=16% Similarity=0.312 Sum_probs=60.4
Q ss_pred ccCCcccHHHHHhhhhcCCceEEEEEecCC-------chhHHHHHHhhcc-CCceEEEEEEccCCCChhHHhHhCCCCCC
Q psy16770 242 VPLSATNVDAFLDNWREDNKVHALLFQRSL-------PVRLRYLINAFKH-RTTIVFGVIVYDQEDSSSVFQRFKVPGDK 313 (554)
Q Consensus 242 ~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~-------~~~~~~~~~a~~~-~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~ 313 (554)
..++.+++++.+.+ .. +++.|...- .+.+...+..... ...+.|+.++++ .+..++++|+|.. .
T Consensus 3 ~~l~~~~f~~~~~~----~~-~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~v~~-~ 74 (102)
T cd03005 3 LELTEDNFDHHIAE----GN-HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCT--QHRELCSEFQVRG-Y 74 (102)
T ss_pred eECCHHHHHHHhhc----CC-EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECC--CChhhHhhcCCCc-C
Confidence 45678888888842 33 555553322 2222222222221 237999999987 5778999999997 9
Q ss_pred ceEEEEeCCCCCCCceeecCCCChhHHHhHH
Q psy16770 314 DSLLIFKEDKDRPSASITMNSIPVPTLQDIT 344 (554)
Q Consensus 314 Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi 344 (554)
|++++|+++.. . ..+.|..+...|.+||
T Consensus 75 Pt~~~~~~g~~-~--~~~~G~~~~~~l~~~i 102 (102)
T cd03005 75 PTLLLFKDGEK-V--DKYKGTRDLDSLKEFV 102 (102)
T ss_pred CEEEEEeCCCe-e--eEeeCCCCHHHHHhhC
Confidence 99999976542 2 3567788888887775
No 238
>PRK15000 peroxidase; Provisional
Probab=97.14 E-value=0.0021 Score=61.27 Aligned_cols=87 Identities=17% Similarity=0.355 Sum_probs=64.2
Q ss_pred CCcEEEEEEc-ccccccccchHHHHHHHHHhCCCCEEEEEEEecC----------------------------cHHHHHH
Q psy16770 147 TTPHLILFYS-DWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN----------------------------EQGLARR 197 (554)
Q Consensus 147 ~~~~lV~Fya-~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~----------------------------~~~l~~~ 197 (554)
++++++.||+ +||+.|....+.+.+.+++++..|+.+..|.++. +..+++.
T Consensus 34 gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ 113 (200)
T PRK15000 34 GKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKA 113 (200)
T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHHH
Confidence 5689999999 5999999999999999999987677777777663 2256667
Q ss_pred hCCc------CCCCcceec-cCCeEEEEe-C---CcccHHHHHHHHHH
Q psy16770 198 LGVG------SQLPQIALL-TDGRTSFFK-E---PSFSVQKMVEFFRL 234 (554)
Q Consensus 198 ~~v~------~~~Pti~~~-~~g~~~~y~-~---g~~~~~~i~~fl~~ 234 (554)
||+. . .|+..++ ++|++.... + ..++.+++...++.
T Consensus 114 ygv~~~~~g~~-~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~a 160 (200)
T PRK15000 114 YGIEHPDEGVA-LRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDA 160 (200)
T ss_pred cCCccCCCCcE-EeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 7776 4 7777777 577764322 2 12577888887764
No 239
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.12 E-value=0.0029 Score=52.89 Aligned_cols=96 Identities=15% Similarity=0.140 Sum_probs=62.2
Q ss_pred cccCCcccHHHHHhhhhcCCceEEEEEecCCc-------hhHHHHHHhhccCCceEEEEEEccCCCChhHHhHhCCCCCC
Q psy16770 241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLP-------VRLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDK 313 (554)
Q Consensus 241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~-------~~~~~~~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~ 313 (554)
+..++.+++++.+.+ .++++++.|....- +.+...+........+.|+.++++. .+++..+++.+ .
T Consensus 2 v~~l~~~~f~~~i~~---~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~---~~~~~~~~~~~-~ 74 (104)
T cd02995 2 VKVVVGKNFDEVVLD---SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATA---NDVPSEFVVDG-F 74 (104)
T ss_pred eEEEchhhhHHHHhC---CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcc---hhhhhhccCCC-C
Confidence 456778888887753 34666666643322 2222222222223469999999862 36888899875 9
Q ss_pred ceEEEEeCCCCCCCceeecCCCChhHHHhHH
Q psy16770 314 DSLLIFKEDKDRPSASITMNSIPVPTLQDIT 344 (554)
Q Consensus 314 Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi 344 (554)
|++++|+++... ....+.|..+...|.+||
T Consensus 75 Pt~~~~~~~~~~-~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 75 PTILFFPAGDKS-NPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred CEEEEEcCCCcC-CceEccCCcCHHHHHhhC
Confidence 999999876522 124577888888888775
No 240
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=97.12 E-value=0.0041 Score=51.17 Aligned_cols=92 Identities=14% Similarity=0.191 Sum_probs=60.0
Q ss_pred CCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----Hhhcc--CCceEEEEEEccCCCChhHHhHhCCCCCCceE
Q psy16770 244 LSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKH--RTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSL 316 (554)
Q Consensus 244 ~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~--~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptl 316 (554)
++.+++.+.+.+ .++++++|.+...+..+... .+..+ .+.+.|+.++++ .+..++++|+|.. .|++
T Consensus 3 l~~~~~~~~i~~----~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~i~~-~Pt~ 75 (101)
T cd02961 3 LTDDNFDELVKD----SKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCT--ANNDLCSEYGVRG-YPTI 75 (101)
T ss_pred ccHHHHHHHHhC----CCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeecc--chHHHHHhCCCCC-CCEE
Confidence 466777777753 33666666544333222211 11134 578999999887 5789999999997 9999
Q ss_pred EEEeCCCCCCCceeecCCCChhHHHhHH
Q psy16770 317 LIFKEDKDRPSASITMNSIPVPTLQDIT 344 (554)
Q Consensus 317 vvfk~~~~~~~~~i~~~~~~~~~l~~fi 344 (554)
++|+++.... ..+.+..+.+.+.+|+
T Consensus 76 ~~~~~~~~~~--~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 76 KLFPNGSKEP--VKYEGPRTLESLVEFI 101 (101)
T ss_pred EEEcCCCccc--ccCCCCcCHHHHHhhC
Confidence 9998764322 3455666666676654
No 241
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=97.11 E-value=0.0033 Score=52.59 Aligned_cols=96 Identities=13% Similarity=0.176 Sum_probs=62.5
Q ss_pred cccCCcccHHHHHhhhhcCCceEEEEEecCCchh-------HHHHHHhhccCCceEEEEEEccCCCChhHHhHhCCCCCC
Q psy16770 241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVR-------LRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDK 313 (554)
Q Consensus 241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~-------~~~~~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~ 313 (554)
+..+++.++++.++. .++.++.|....-+. +......+...+.+.|+.++++...+..++++++|.+ .
T Consensus 2 ~~~l~~~~~~~~~~~----~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~-~ 76 (104)
T cd02997 2 VVHLTDEDFRKFLKK----EKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKG-F 76 (104)
T ss_pred eEEechHhHHHHHhh----CCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCcc-c
Confidence 345677788888753 446666664433222 2222222222366889999998544889999999987 9
Q ss_pred ceEEEEeCCCCCCCceeecCCCChhHHHhHH
Q psy16770 314 DSLLIFKEDKDRPSASITMNSIPVPTLQDIT 344 (554)
Q Consensus 314 Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi 344 (554)
|++++|+++.. . ..+.|..+.+.+.+||
T Consensus 77 Pt~~~~~~g~~-~--~~~~g~~~~~~l~~~l 104 (104)
T cd02997 77 PTFKYFENGKF-V--EKYEGERTAEDIIEFM 104 (104)
T ss_pred cEEEEEeCCCe-e--EEeCCCCCHHHHHhhC
Confidence 99999986532 2 3566777777777764
No 242
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=97.11 E-value=0.0034 Score=53.49 Aligned_cols=97 Identities=13% Similarity=0.153 Sum_probs=61.9
Q ss_pred cccCCcccHHHHHhhhhcCCceEEEEEecCCch-------hHHHHHHhhccCC-ceEEEEEEccCCCChhHHh-HhCCCC
Q psy16770 241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPV-------RLRYLINAFKHRT-TIVFGVIVYDQEDSSSVFQ-RFKVPG 311 (554)
Q Consensus 241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~-------~~~~~~~a~~~~~-~v~Fg~v~~~~~~~~~l~~-k~~i~~ 311 (554)
|..+|.++++...... ..++++++.|....-+ .+..++ ..+.+ .+.|+.++++. .+..++. .+++..
T Consensus 3 v~~~~~~~~~~~~~~~-~~~k~vlv~f~a~wC~~C~~~~~~~~~la--~~~~~~~~~~~~vd~d~-~~~~~~~~~~~v~~ 78 (109)
T cd02993 3 VVTLSRAEIEALAKGE-RRNQSTLVVLYAPWCPFCQAMEASYEELA--EKLAGSNVKVAKFNADG-EQREFAKEELQLKS 78 (109)
T ss_pred ceeccHHHHHHHHhhh-hcCCCEEEEEECCCCHHHHHHhHHHHHHH--HHhccCCeEEEEEECCc-cchhhHHhhcCCCc
Confidence 4567788888877532 3456777777433322 222222 23444 58999999873 1456676 599997
Q ss_pred CCceEEEEeCCCCCCCceeecCC-CChhHHHhHH
Q psy16770 312 DKDSLLIFKEDKDRPSASITMNS-IPVPTLQDIT 344 (554)
Q Consensus 312 ~~Ptlvvfk~~~~~~~~~i~~~~-~~~~~l~~fi 344 (554)
.||+++|+++...+ ..+.++ .+...|..||
T Consensus 79 -~Pti~~f~~~~~~~--~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 79 -FPTILFFPKNSRQP--IKYPSEQRDVDSLLMFV 109 (109)
T ss_pred -CCEEEEEcCCCCCc--eeccCCCCCHHHHHhhC
Confidence 99999998765544 346664 6777787775
No 243
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=97.10 E-value=0.0045 Score=51.21 Aligned_cols=94 Identities=16% Similarity=0.276 Sum_probs=61.7
Q ss_pred CcccHHHHHhhhhcCCceEEEEEecCCchhHHHH-----HHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEE
Q psy16770 245 SATNVDAFLDNWREDNKVHALLFQRSLPVRLRYL-----INAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIF 319 (554)
Q Consensus 245 t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~-----~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvf 319 (554)
+.+++.+.+.. ..++++++|.....+..+.. ..+..+.+++.|+.++++ .+..++++|+|.. .|++++|
T Consensus 2 ~~~~~~~~~~~---~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~v~~-~P~~~~~ 75 (101)
T TIGR01068 2 TDANFDETIAS---SDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVD--ENPDIAAKYGIRS-IPTLLLF 75 (101)
T ss_pred CHHHHHHHHhh---cCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECC--CCHHHHHHcCCCc-CCEEEEE
Confidence 45667777653 35566666654433222211 112245567999999987 6788999999997 9999999
Q ss_pred eCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770 320 KEDKDRPSASITMNSIPVPTLQDITDNN 347 (554)
Q Consensus 320 k~~~~~~~~~i~~~~~~~~~l~~fi~~~ 347 (554)
+++.. . ....|..+.+.+.+|++.+
T Consensus 76 ~~g~~--~-~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 76 KNGKE--V-DRSVGALPKAALKQLINKN 100 (101)
T ss_pred eCCcE--e-eeecCCCCHHHHHHHHHhh
Confidence 76432 1 2345666778899988753
No 244
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.10 E-value=0.0015 Score=53.45 Aligned_cols=95 Identities=17% Similarity=0.210 Sum_probs=70.8
Q ss_pred cccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC--cHHHHHHhCCc----CCCC-c
Q psy16770 134 HWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN--EQGLARRLGVG----SQLP-Q 206 (554)
Q Consensus 134 ~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~--~~~l~~~~~v~----~~~P-t 206 (554)
.++|.+++. .+.-+||.|..+--.. ......+.++|+.++|. -.++.|||.. ...||+++.|. . -| +
T Consensus 9 ~KdfKKLLR---Tr~NVLvLy~ks~k~a-~~~Lk~~~~~A~~vkG~-gT~~~vdCgd~e~kKLCKKlKv~~~~kp-~~~~ 82 (112)
T cd03067 9 HKDFKKLLR---TRNNVLVLYSKSAKSA-EALLKLLSDVAQAVKGQ-GTIAWIDCGDSESRKLCKKLKVDPSSKP-KPVE 82 (112)
T ss_pred hHHHHHHHh---hcCcEEEEEecchhhH-HHHHHHHHHHHHHhcCc-eeEEEEecCChHHHHHHHHHccCCCCCC-Ccch
Confidence 467777773 4456788776554333 33445889999999985 6789999998 78899999998 4 44 3
Q ss_pred ceeccCCeEEEEeCCcccHHHHHHHHHH
Q psy16770 207 IALLTDGRTSFFKEPSFSVQKMVEFFRL 234 (554)
Q Consensus 207 i~~~~~g~~~~y~~g~~~~~~i~~fl~~ 234 (554)
+.-|++|.....|....+..+++.|++.
T Consensus 83 LkHYKdG~fHkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 83 LKHYKDGDFHTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred hhcccCCCccccccchhhHHHHHHHhhC
Confidence 5667999886666566788999999975
No 245
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.10 E-value=0.00076 Score=59.36 Aligned_cols=82 Identities=15% Similarity=0.327 Sum_probs=51.9
Q ss_pred CCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHh---CCcCCCCcceec-cCCeEEEEeCCc
Q psy16770 147 TTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRL---GVGSQLPQIALL-TDGRTSFFKEPS 222 (554)
Q Consensus 147 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~---~v~~~~Pti~~~-~~g~~~~y~~g~ 222 (554)
.+..++-|..+|||.|.+..|.+.++++... ++.+-.+.-+.+.++..+| |.. ++|+++++ .+|+.....|.+
T Consensus 41 ~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p--~i~~~~i~rd~~~el~~~~lt~g~~-~IP~~I~~d~~~~~lg~wger 117 (129)
T PF14595_consen 41 KPYNILVITETWCGDCARNVPVLAKIAEANP--NIEVRIILRDENKELMDQYLTNGGR-SIPTFIFLDKDGKELGRWGER 117 (129)
T ss_dssp S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T--TEEEEEE-HHHHHHHTTTTTT-SS---SSEEEEE-TT--EEEEEESS
T ss_pred CCcEEEEEECCCchhHHHHHHHHHHHHHhCC--CCeEEEEEecCChhHHHHHHhCCCe-ecCEEEEEcCCCCEeEEEcCC
Confidence 3455666999999999999999999999864 4677777777777777665 556 49999999 567887777664
Q ss_pred ccHHHHHHHHH
Q psy16770 223 FSVQKMVEFFR 233 (554)
Q Consensus 223 ~~~~~i~~fl~ 233 (554)
++.+.+++.
T Consensus 118 --P~~~~~~~~ 126 (129)
T PF14595_consen 118 --PKEVQELVD 126 (129)
T ss_dssp ---HHHH----
T ss_pred --CHHHhhccc
Confidence 355555443
No 246
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.09 E-value=0.001 Score=64.84 Aligned_cols=84 Identities=18% Similarity=0.264 Sum_probs=60.8
Q ss_pred CCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEE--------------------------------------
Q psy16770 143 PKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFF-------------------------------------- 184 (554)
Q Consensus 143 ~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~-------------------------------------- 184 (554)
.....+..++.|.-|.|++|+++.++++++.+. ++.+.
T Consensus 103 g~~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~----~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~ 178 (232)
T PRK10877 103 KAPQEKHVITVFTDITCGYCHKLHEQMKDYNAL----GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKD 178 (232)
T ss_pred cCCCCCEEEEEEECCCChHHHHHHHHHHHHhcC----CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCC
Confidence 334567789999999999999999888775321 11111
Q ss_pred ------EEEecCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCcccHHHHHHHHHHh
Q psy16770 185 ------TVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLK 235 (554)
Q Consensus 185 ------~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~~i~~fl~~~ 235 (554)
..+...+..+++++||+| .||++ +.+|+.+ .|..+.+.|.+++.+.
T Consensus 179 ~~~~~c~~~v~~~~~la~~lgi~g-TPtiv-~~~G~~~---~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 179 VSPASCDVDIADHYALGVQFGVQG-TPAIV-LSNGTLV---PGYQGPKEMKAFLDEH 230 (232)
T ss_pred CCcccccchHHHhHHHHHHcCCcc-ccEEE-EcCCeEe---eCCCCHHHHHHHHHHc
Confidence 112233668999999998 99998 6788765 4667889999988754
No 247
>KOG4277|consensus
Probab=97.07 E-value=0.016 Score=56.70 Aligned_cols=137 Identities=12% Similarity=0.119 Sum_probs=91.3
Q ss_pred HHHHhhhhcCCceEEEEEecCCchhHHHHHHhh-ccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCCc
Q psy16770 250 DAFLDNWREDNKVHALLFQRSLPVRLRYLINAF-KHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSA 328 (554)
Q Consensus 250 ~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~a~-~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~ 328 (554)
.+|.++||.+++.. .|-+...-..+ ...--+++|..+++ .-+.++.+|+|.+ +|||.+||.+-.
T Consensus 48 VdFYAPWC~HCKkL--------ePiWdeVG~elkdig~PikVGKlDaT--~f~aiAnefgiqG-YPTIk~~kgd~a---- 112 (468)
T KOG4277|consen 48 VDFYAPWCAHCKKL--------EPIWDEVGHELKDIGLPIKVGKLDAT--RFPAIANEFGIQG-YPTIKFFKGDHA---- 112 (468)
T ss_pred EEeechhhhhcccc--------cchhHHhCcchhhcCCceeecccccc--cchhhHhhhccCC-CceEEEecCCee----
Confidence 34555565555443 34344444444 33456889999988 6889999999998 999999987432
Q ss_pred eeecCCCChhHHHhHHhcCCCcccccccc-hhhhhhcCCCCceEEEEEcCCCCcchhHHHHHHHHHhhccCCCCceEEEE
Q psy16770 329 SITMNSIPVPTLQDITDNNPYLTLPRISS-QSMLDAVCPVKKLCVVLFSEDSPEHDASRHTLRRFAQESRFVHNNIAFMY 407 (554)
Q Consensus 329 ~i~~~~~~~~~l~~fi~~~~~~~v~~lt~-~~~~~~~c~~~~lcvvl~~~~~~~~~~~~~~l~~~a~~~~~~~~~v~F~~ 407 (554)
+-|.|..+.+.|.+|......+.+..+.+ |-.++.+-..++...|+|..++ ....+.+.+.|.+ .+..++
T Consensus 113 ~dYRG~R~Kd~iieFAhR~a~aiI~pi~enQ~~fehlq~Rhq~ffVf~Gtge---~PL~d~fidAASe------~~~~a~ 183 (468)
T KOG4277|consen 113 IDYRGGREKDAIIEFAHRCAAAIIEPINENQIEFEHLQARHQPFFVFFGTGE---GPLFDAFIDAASE------KFSVAR 183 (468)
T ss_pred eecCCCccHHHHHHHHHhcccceeeecChhHHHHHHHhhccCceEEEEeCCC---CcHHHHHHHHhhh------heeeee
Confidence 45778889999999999888888888876 5555554322344455554322 3566777777755 355555
Q ss_pred Eec
Q psy16770 408 VFI 410 (554)
Q Consensus 408 vd~ 410 (554)
...
T Consensus 184 FfS 186 (468)
T KOG4277|consen 184 FFS 186 (468)
T ss_pred eec
Confidence 554
No 248
>KOG2603|consensus
Probab=97.07 E-value=0.0021 Score=63.31 Aligned_cols=109 Identities=16% Similarity=0.249 Sum_probs=86.0
Q ss_pred ccccccccccccccccCCCCCCcEEEEEEcc----cccccccchHHHHHHHHHhC-------CCCEEEEEEEecCcHHHH
Q psy16770 127 FHKLSTTHWNFEKNYIPKSYTTPHLILFYSD----WCFACLQVEPIFKKLMDELS-------PLGVGFFTVHVHNEQGLA 195 (554)
Q Consensus 127 ~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~----wC~~C~~l~p~~~~~a~~l~-------~~~v~~~~Vd~~~~~~l~ 195 (554)
..++.+++++|.+.+.+...+-..+|+|.|- .|.-|+.+..+|.-+|.... +.++=|+.||-++.+++-
T Consensus 40 ~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~F 119 (331)
T KOG2603|consen 40 SGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQVF 119 (331)
T ss_pred CCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHHH
Confidence 4588999999999998766777788999874 69999999999999987754 224779999999999999
Q ss_pred HHhCCcCCCCcceeccC--CeE------EEEeCCcccHHHHHHHHHHhCC
Q psy16770 196 RRLGVGSQLPQIALLTD--GRT------SFFKEPSFSVQKMVEFFRLKLP 237 (554)
Q Consensus 196 ~~~~v~~~~Pti~~~~~--g~~------~~y~~g~~~~~~i~~fl~~~~~ 237 (554)
+.++++. .|++.+|.. |+. ..+.-|. .+|.+.+|+.++..
T Consensus 120 q~l~ln~-~P~l~~f~P~~~n~~~s~~~d~~~~g~-~Ae~iaqfv~~~tk 167 (331)
T KOG2603|consen 120 QQLNLNN-VPHLVLFSPAKGNKKRSDQMDQQDLGF-EAEQIAQFVADRTK 167 (331)
T ss_pred HHhcccC-CCeEEEeCCCccccccCccchhhhcch-hHHHHHHHHHHhhh
Confidence 9999997 999999932 221 1222233 47888888887754
No 249
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.04 E-value=0.0016 Score=52.93 Aligned_cols=75 Identities=20% Similarity=0.392 Sum_probs=53.3
Q ss_pred EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCc----HHHHHHhCC--cCCCCcceeccCCeEEEEeCCccc
Q psy16770 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE----QGLARRLGV--GSQLPQIALLTDGRTSFFKEPSFS 224 (554)
Q Consensus 151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~----~~l~~~~~v--~~~~Pti~~~~~g~~~~y~~g~~~ 224 (554)
++.|..+||++|.++...++++..+.. ++.+..+|...+ ..+.+..|- .+ +|++. .+|+. .||.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~--~i~~~~idi~~~~~~~~~l~~~~g~~~~t-VP~if--i~g~~---igG~-- 71 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA--DFEFRYIDIHAEGISKADLEKTVGKPVET-VPQIF--VDEKH---VGGC-- 71 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC--CCcEEEEECCCCHHHHHHHHHHhCCCCCC-cCeEE--ECCEE---ecCH--
Confidence 677999999999998887776654432 467777887753 356666664 65 99984 46643 4664
Q ss_pred HHHHHHHHHHhC
Q psy16770 225 VQKMVEFFRLKL 236 (554)
Q Consensus 225 ~~~i~~fl~~~~ 236 (554)
++|.+++++..
T Consensus 72 -~dl~~~~~~~~ 82 (86)
T TIGR02183 72 -TDFEQLVKENF 82 (86)
T ss_pred -HHHHHHHHhcc
Confidence 88888887754
No 250
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=97.00 E-value=0.0026 Score=56.50 Aligned_cols=45 Identities=22% Similarity=0.370 Sum_probs=37.6
Q ss_pred CCCcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecC
Q psy16770 146 YTTPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN 190 (554)
Q Consensus 146 ~~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~ 190 (554)
.+++++|.|| +.||+.|....|.+.++.+.++..++.+..|..+.
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~ 66 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDS 66 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3568899999 78999999999999999999865568888887654
No 251
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=97.00 E-value=0.008 Score=49.60 Aligned_cols=90 Identities=16% Similarity=0.161 Sum_probs=58.2
Q ss_pred cHHHHHhhhhcCCceEEEEEecCCchhHHHH-----HHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCC
Q psy16770 248 NVDAFLDNWREDNKVHALLFQRSLPVRLRYL-----INAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKED 322 (554)
Q Consensus 248 ~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~-----~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~ 322 (554)
++++.+.. ...+++++.|....-++.+.. ..+..+.+.+.|+.++++ ....++++|+|.+ .|++++|+++
T Consensus 2 ~f~~~i~~--~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~--~~~~l~~~~~i~~-~Pt~~~~~~g 76 (96)
T cd02956 2 NFQQVLQE--STQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCD--AQPQIAQQFGVQA-LPTVYLFAAG 76 (96)
T ss_pred ChHHHHHh--cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEecc--CCHHHHHHcCCCC-CCEEEEEeCC
Confidence 45555532 235677776644433222211 112245567889999987 6889999999997 9999999854
Q ss_pred CCCCCceeecCCCChhHHHhHHh
Q psy16770 323 KDRPSASITMNSIPVPTLQDITD 345 (554)
Q Consensus 323 ~~~~~~~i~~~~~~~~~l~~fi~ 345 (554)
.. . ....|..+.+.|.+|++
T Consensus 77 ~~--~-~~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 77 QP--V-DGFQGAQPEEQLRQMLD 96 (96)
T ss_pred EE--e-eeecCCCCHHHHHHHhC
Confidence 22 1 24667777888888763
No 252
>PRK10996 thioredoxin 2; Provisional
Probab=97.00 E-value=0.0058 Score=54.58 Aligned_cols=95 Identities=14% Similarity=0.209 Sum_probs=64.8
Q ss_pred cCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHH-----HHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCceEE
Q psy16770 243 PLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYL-----INAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLL 317 (554)
Q Consensus 243 ~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~-----~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlv 317 (554)
..+.+++++.+. .++++++.|....-+..+.. ..+.++.+.+.|+.++.+ .+.+++++|+|.+ .|+++
T Consensus 39 ~~~~~~~~~~i~----~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~--~~~~l~~~~~V~~-~Ptli 111 (139)
T PRK10996 39 NATGETLDKLLQ----DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTE--AERELSARFRIRS-IPTIM 111 (139)
T ss_pred EcCHHHHHHHHh----CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCC--CCHHHHHhcCCCc-cCEEE
Confidence 346667777663 46777777755444332221 112245677999999887 6889999999997 99999
Q ss_pred EEeCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770 318 IFKEDKDRPSASITMNSIPVPTLQDITDNN 347 (554)
Q Consensus 318 vfk~~~~~~~~~i~~~~~~~~~l~~fi~~~ 347 (554)
+|+++.. . ....|.++.+.|.+|++..
T Consensus 112 i~~~G~~--v-~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 112 IFKNGQV--V-DMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred EEECCEE--E-EEEcCCCCHHHHHHHHHHh
Confidence 9985332 1 2446778888899998753
No 253
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=96.98 E-value=0.0058 Score=51.01 Aligned_cols=90 Identities=12% Similarity=0.065 Sum_probs=60.9
Q ss_pred cccCCcccHHHHHhhhhcCCceEEEEEecCCc-------hhHHHHHHhhccC-CceEEEEEEccCCCChhHHhHhCCCCC
Q psy16770 241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLP-------VRLRYLINAFKHR-TTIVFGVIVYDQEDSSSVFQRFKVPGD 312 (554)
Q Consensus 241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~-------~~~~~~~~a~~~~-~~v~Fg~v~~~~~~~~~l~~k~~i~~~ 312 (554)
+..++.+++++.+. +.+ ++.|...-- +.+..++. .+. ..+.|+.++++ .+..++++|+|.+
T Consensus 3 v~~l~~~~f~~~~~-----~~~-lv~f~a~wC~~C~~~~p~~~~l~~--~~~~~~v~~~~vd~~--~~~~~~~~~~i~~- 71 (101)
T cd02994 3 VVELTDSNWTLVLE-----GEW-MIEFYAPWCPACQQLQPEWEEFAD--WSDDLGINVAKVDVT--QEPGLSGRFFVTA- 71 (101)
T ss_pred eEEcChhhHHHHhC-----CCE-EEEEECCCCHHHHHHhHHHHHHHH--hhccCCeEEEEEEcc--CCHhHHHHcCCcc-
Confidence 45677888888763 234 455533222 22222222 222 36899999987 6788999999997
Q ss_pred CceEEEEeCCCCCCCceeecCCCChhHHHhHHh
Q psy16770 313 KDSLLIFKEDKDRPSASITMNSIPVPTLQDITD 345 (554)
Q Consensus 313 ~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~ 345 (554)
.||+++|+++. . ..+.|..+.+.|.+|++
T Consensus 72 ~Pt~~~~~~g~--~--~~~~G~~~~~~l~~~i~ 100 (101)
T cd02994 72 LPTIYHAKDGV--F--RRYQGPRDKEDLISFIE 100 (101)
T ss_pred cCEEEEeCCCC--E--EEecCCCCHHHHHHHHh
Confidence 99999997653 2 35678888889998886
No 254
>KOG0912|consensus
Probab=96.97 E-value=0.0057 Score=60.02 Aligned_cols=112 Identities=14% Similarity=0.257 Sum_probs=78.8
Q ss_pred CCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCCCChhHHHhHHhcCCCcccccccchhhhhhc
Q psy16770 285 RTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRISSQSMLDAV 364 (554)
Q Consensus 285 ~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~~~~~v~~lt~~~~~~~~ 364 (554)
.+++.+|.|+|+ ....++.+|.|++ +||+.+|+.+.-.. .-|-|..+.++|.+||+...--++.++.+.+..+..
T Consensus 48 ~~kvvwg~VDcd--~e~~ia~ky~I~K-yPTlKvfrnG~~~~--rEYRg~RsVeaL~efi~kq~s~~i~Ef~sl~~l~n~ 122 (375)
T KOG0912|consen 48 EGKVVWGKVDCD--KEDDIADKYHINK-YPTLKVFRNGEMMK--REYRGQRSVEALIEFIEKQLSDPINEFESLDQLQNL 122 (375)
T ss_pred CcceEEEEcccc--hhhHHhhhhcccc-Cceeeeeeccchhh--hhhccchhHHHHHHHHHHHhccHHHHHHhHHHHHhh
Confidence 378999999998 6889999999997 99999999754322 236677788999999998877778888777666554
Q ss_pred C-CCCceEEEEEcCCCCcchhHHHHHHHHHhhccCCCCceEEEE
Q psy16770 365 C-PVKKLCVVLFSEDSPEHDASRHTLRRFAQESRFVHNNIAFMY 407 (554)
Q Consensus 365 c-~~~~lcvvl~~~~~~~~~~~~~~l~~~a~~~~~~~~~v~F~~ 407 (554)
- |.++. ||...+.. + ....+.++++|.. ++++ ..|..
T Consensus 123 ~~p~K~~-vIgyF~~k-d-spey~~~~kva~~--lr~d-c~f~V 160 (375)
T KOG0912|consen 123 DIPSKRT-VIGYFPSK-D-SPEYDNLRKVASL--LRDD-CVFLV 160 (375)
T ss_pred hccccce-EEEEeccC-C-CchHHHHHHHHHH--Hhhc-cEEEe
Confidence 4 33444 44444432 2 2445678888876 6543 44443
No 255
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=96.97 E-value=0.012 Score=59.12 Aligned_cols=159 Identities=14% Similarity=0.188 Sum_probs=98.0
Q ss_pred cccCCcccHHHHHhhhhcCCceEEEEEecC-CchhHH---------HHHHhh--ccCCceEEEEEEccCCCChhHHhHhC
Q psy16770 241 IVPLSATNVDAFLDNWREDNKVHALLFQRS-LPVRLR---------YLINAF--KHRTTIVFGVIVYDQEDSSSVFQRFK 308 (554)
Q Consensus 241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~-~~~~~~---------~~~~a~--~~~~~v~Fg~v~~~~~~~~~l~~k~~ 308 (554)
|..+|+.|+.+.+.+ ...++++|... .+.... .+.+++ .-+..+.||.|+.. .+..+++++|
T Consensus 36 Vi~LneKNfk~~lKk----yd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~--Kd~klAKKLg 109 (383)
T PF01216_consen 36 VIDLNEKNFKRALKK----YDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSK--KDAKLAKKLG 109 (383)
T ss_dssp CEEE-TTTHHHHHHH-----SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETT--TTHHHHHHHT
T ss_pred eEEcchhHHHHHHHh----hcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccH--HHHHHHHhcC
Confidence 567789999998864 55666666432 221111 112233 23578999999876 7899999999
Q ss_pred CCCCCceEEEEeCCCCCCCceeecCCCChhHHHhHHhcCCCcccccccchhh---hhhcCCCCceEEEEEcCCCCcchhH
Q psy16770 309 VPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRISSQSM---LDAVCPVKKLCVVLFSEDSPEHDAS 385 (554)
Q Consensus 309 i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~~~~~v~~lt~~~~---~~~~c~~~~lcvvl~~~~~~~~~~~ 385 (554)
+.. .++|.+|+++.. +-+.|.++..+|..||-.---.++..+++... |+..- ...-||.+..+. ..++
T Consensus 110 v~E-~~SiyVfkd~~~----IEydG~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe~ie--d~~klIGyFk~~--~s~~ 180 (383)
T PF01216_consen 110 VEE-EGSIYVFKDGEV----IEYDGERSADTLVEFLLDLLEDPVEIINNKHELKAFERIE--DDIKLIGYFKSE--DSEH 180 (383)
T ss_dssp --S-TTEEEEEETTEE----EEE-S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHHH----SS-EEEEE-SST--TSHH
T ss_pred ccc-cCcEEEEECCcE----EEecCccCHHHHHHHHHHhcccchhhhcChhhhhhhhhcc--cceeEEEEeCCC--CcHH
Confidence 997 899999997533 45789999999999997654455666666433 44432 234566665543 2358
Q ss_pred HHHHHHHHhhccCCCCceEEEEEecccchHHHHhh
Q psy16770 386 RHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNAL 420 (554)
Q Consensus 386 ~~~l~~~a~~~~~~~~~v~F~~vd~~~q~~~~~~~ 420 (554)
..+|.++|.. |.. .++|.-+.- +.++..+
T Consensus 181 yk~FeeAAe~--F~p-~IkFfAtfd---~~vAk~L 209 (383)
T PF01216_consen 181 YKEFEEAAEH--FQP-YIKFFATFD---KKVAKKL 209 (383)
T ss_dssp HHHHHHHHHH--CTT-TSEEEEE-S---HHHHHHH
T ss_pred HHHHHHHHHh--hcC-ceeEEEEec---chhhhhc
Confidence 8899999999 853 477766543 5566666
No 256
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=96.97 E-value=0.0018 Score=48.62 Aligned_cols=55 Identities=20% Similarity=0.469 Sum_probs=41.2
Q ss_pred EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHH----HHHhCCcCCCCcceeccCCeE
Q psy16770 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGL----ARRLGVGSQLPQIALLTDGRT 215 (554)
Q Consensus 151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l----~~~~~v~~~~Pti~~~~~g~~ 215 (554)
++.|..+||++|++....++ ..|+.+..+|.+.++.. .+..|..+ +|++.+ +|+.
T Consensus 1 V~vy~~~~C~~C~~~~~~L~-------~~~i~y~~~dv~~~~~~~~~l~~~~g~~~-~P~v~i--~g~~ 59 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLD-------EKGIPYEEVDVDEDEEAREELKELSGVRT-VPQVFI--DGKF 59 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHH-------HTTBEEEEEEGGGSHHHHHHHHHHHSSSS-SSEEEE--TTEE
T ss_pred cEEEEcCCCcCHHHHHHHHH-------HcCCeeeEcccccchhHHHHHHHHcCCCc-cCEEEE--CCEE
Confidence 46799999999998776663 33688999999987543 33449897 999876 6654
No 257
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=96.92 E-value=0.0032 Score=54.37 Aligned_cols=88 Identities=14% Similarity=0.154 Sum_probs=65.6
Q ss_pred CCCCCcEEEEEEcc----cccccccc--hHHHHHHHHHhCCCCEEEEEEEecC--cHHHHHHhCCcCCCCcceec--cCC
Q psy16770 144 KSYTTPHLILFYSD----WCFACLQV--EPIFKKLMDELSPLGVGFFTVHVHN--EQGLARRLGVGSQLPQIALL--TDG 213 (554)
Q Consensus 144 ~~~~~~~lV~Fya~----wC~~C~~l--~p~~~~~a~~l~~~~v~~~~Vd~~~--~~~l~~~~~v~~~~Pti~~~--~~g 213 (554)
++..++.+|.+|+| ||..|+.. .|... +-++. ++.+...|++. ..+++..+++.+ ||++.++ +++
T Consensus 14 k~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~---~~ln~-~fv~w~~dv~~~eg~~la~~l~~~~-~P~~~~l~~~~~ 88 (116)
T cd02991 14 KQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVI---EYINT-RMLFWACSVAKPEGYRVSQALRERT-YPFLAMIMLKDN 88 (116)
T ss_pred HhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHH---HHHHc-CEEEEEEecCChHHHHHHHHhCCCC-CCEEEEEEecCC
Confidence 35788999999999 89999764 34443 44444 48888888875 357899999997 9999888 233
Q ss_pred --eEEEEeCCcccHHHHHHHHHHhC
Q psy16770 214 --RTSFFKEPSFSVQKMVEFFRLKL 236 (554)
Q Consensus 214 --~~~~y~~g~~~~~~i~~fl~~~~ 236 (554)
..+....|..++++++..+....
T Consensus 89 ~~~vv~~i~G~~~~~~ll~~L~~~~ 113 (116)
T cd02991 89 RMTIVGRLEGLIQPEDLINRLTFIM 113 (116)
T ss_pred ceEEEEEEeCCCCHHHHHHHHHHHH
Confidence 34556667789999998887653
No 258
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=96.91 E-value=0.0056 Score=60.46 Aligned_cols=88 Identities=22% Similarity=0.343 Sum_probs=64.0
Q ss_pred CCcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecC----------------------------cHHHHHH
Q psy16770 147 TTPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN----------------------------EQGLARR 197 (554)
Q Consensus 147 ~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~----------------------------~~~l~~~ 197 (554)
++++++.|| +.||+.|....|.+.+..++++..|+.+..|.++. +..+|+.
T Consensus 98 gk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iaka 177 (261)
T PTZ00137 98 DSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKS 177 (261)
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHHH
Confidence 346777777 89999999999999999999976677776666543 2468888
Q ss_pred hCCc-----CCCCcceec-cCCeEEEEe----CCcccHHHHHHHHHHh
Q psy16770 198 LGVG-----SQLPQIALL-TDGRTSFFK----EPSFSVQKMVEFFRLK 235 (554)
Q Consensus 198 ~~v~-----~~~Pti~~~-~~g~~~~y~----~g~~~~~~i~~fl~~~ 235 (554)
||+. . .|+..++ ++|++.... ...++.+++...+...
T Consensus 178 yGv~~~~g~a-~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 178 FGLLRDEGFS-HRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred cCCCCcCCce-ecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 8884 3 6888888 578764322 2235888888877643
No 259
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.91 E-value=0.003 Score=69.94 Aligned_cols=79 Identities=22% Similarity=0.281 Sum_probs=64.7
Q ss_pred CCcEEE-EEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCcccH
Q psy16770 147 TTPHLI-LFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSV 225 (554)
Q Consensus 147 ~~~~lV-~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~ 225 (554)
++++-| .|++++|++|.+....+++++.+.. ++..-.||++..++++++|+|.+ +|++++ ||+.. +.|. .+.
T Consensus 475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~--~i~~~~i~~~~~~~~~~~~~v~~-vP~~~i--~~~~~-~~G~-~~~ 547 (555)
T TIGR03143 475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP--NVEAEMIDVSHFPDLKDEYGIMS-VPAIVV--DDQQV-YFGK-KTI 547 (555)
T ss_pred CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC--CceEEEEECcccHHHHHhCCcee-cCEEEE--CCEEE-EeeC-CCH
Confidence 345544 5689999999999999999998864 58999999999999999999997 999887 66644 4454 488
Q ss_pred HHHHHHH
Q psy16770 226 QKMVEFF 232 (554)
Q Consensus 226 ~~i~~fl 232 (554)
++|++++
T Consensus 548 ~~~~~~~ 554 (555)
T TIGR03143 548 EEMLELI 554 (555)
T ss_pred HHHHHhh
Confidence 9998876
No 260
>PRK09381 trxA thioredoxin; Provisional
Probab=96.91 E-value=0.0082 Score=50.90 Aligned_cols=98 Identities=14% Similarity=0.201 Sum_probs=65.5
Q ss_pred cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHH-----HHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCce
Q psy16770 241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYL-----INAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDS 315 (554)
Q Consensus 241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~-----~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Pt 315 (554)
+..++.+++.+.+.. .+++.++.|....-+..+.. ..+..+.+.+.|+.++++ ....++++|++.. .|+
T Consensus 5 v~~~~~~~~~~~v~~---~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~--~~~~~~~~~~v~~-~Pt 78 (109)
T PRK09381 5 IIHLTDDSFDTDVLK---ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID--QNPGTAPKYGIRG-IPT 78 (109)
T ss_pred ceeeChhhHHHHHhc---CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECC--CChhHHHhCCCCc-CCE
Confidence 455666777765532 35666776644433322222 223356677999999987 6788999999997 999
Q ss_pred EEEEeCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770 316 LLIFKEDKDRPSASITMNSIPVPTLQDITDNN 347 (554)
Q Consensus 316 lvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~ 347 (554)
+++|+++... ....|..+...|..||..+
T Consensus 79 ~~~~~~G~~~---~~~~G~~~~~~l~~~i~~~ 107 (109)
T PRK09381 79 LLLFKNGEVA---ATKVGALSKGQLKEFLDAN 107 (109)
T ss_pred EEEEeCCeEE---EEecCCCCHHHHHHHHHHh
Confidence 9999764321 2345667788888888754
No 261
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=96.91 E-value=0.0008 Score=61.09 Aligned_cols=71 Identities=21% Similarity=0.411 Sum_probs=49.0
Q ss_pred CCCCcEEEEEEcccccccccchH-HH--HHHHHHhCCCCEEEEEEEecCcHHHHHHh--------CCcCCCCcceec-cC
Q psy16770 145 SYTTPHLILFYSDWCFACLQVEP-IF--KKLMDELSPLGVGFFTVHVHNEQGLARRL--------GVGSQLPQIALL-TD 212 (554)
Q Consensus 145 ~~~~~~lV~Fya~wC~~C~~l~p-~~--~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~--------~v~~~~Pti~~~-~~ 212 (554)
..+++++|.++++||+-|+.|+. .| .++++.+.. .+.-++||.++.+++...| |..| +|+.+++ .+
T Consensus 35 ~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~-~FI~VkvDree~Pdid~~y~~~~~~~~~~gG-wPl~vfltPd 112 (163)
T PF03190_consen 35 KENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR-NFIPVKVDREERPDIDKIYMNAVQAMSGSGG-WPLTVFLTPD 112 (163)
T ss_dssp HHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH-H-EEEEEETTT-HHHHHHHHHHHHHHHS----SSEEEEE-TT
T ss_pred hcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC-CEEEEEeccccCccHHHHHHHHHHHhcCCCC-CCceEEECCC
Confidence 57889999999999999998875 33 356777765 3788899999999999888 7777 9998887 67
Q ss_pred CeEEE
Q psy16770 213 GRTSF 217 (554)
Q Consensus 213 g~~~~ 217 (554)
|+++.
T Consensus 113 g~p~~ 117 (163)
T PF03190_consen 113 GKPFF 117 (163)
T ss_dssp S-EEE
T ss_pred CCeee
Confidence 77643
No 262
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=96.90 E-value=0.0032 Score=52.17 Aligned_cols=80 Identities=18% Similarity=0.235 Sum_probs=62.2
Q ss_pred CCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCC--eEEEEeCCc
Q psy16770 145 SYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDG--RTSFFKEPS 222 (554)
Q Consensus 145 ~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g--~~~~y~~g~ 222 (554)
..+++++|-|+.++|+ .....|.++|+.+++ .+.|+.+. +..++.++++. -|++++|++. ....|.|..
T Consensus 15 ~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~-~~~F~~~~---~~~~~~~~~~~--~~~i~l~~~~~~~~~~y~g~~ 85 (97)
T cd02981 15 DKDDVVVVGFFKDEES---EEYKTFEKVAESLRD-DYGFGHTS---DKEVAKKLKVK--PGSVVLFKPFEEEPVEYDGEF 85 (97)
T ss_pred ccCCeEEEEEECCCCc---HHHHHHHHHHHhccc-CCeEEEEC---hHHHHHHcCCC--CCceEEeCCcccCCccCCCCC
Confidence 4677899999999887 567789999999976 37887666 56788888875 5999999763 445676554
Q ss_pred ccHHHHHHHHHH
Q psy16770 223 FSVQKMVEFFRL 234 (554)
Q Consensus 223 ~~~~~i~~fl~~ 234 (554)
+.++|.+|+..
T Consensus 86 -~~~~l~~fi~~ 96 (97)
T cd02981 86 -TEESLVEFIKD 96 (97)
T ss_pred -CHHHHHHHHHh
Confidence 67999999864
No 263
>KOG3425|consensus
Probab=96.88 E-value=0.00089 Score=56.48 Aligned_cols=76 Identities=21% Similarity=0.460 Sum_probs=55.7
Q ss_pred ccccccccCCCCCCcEEEEEEc--------ccccccccchHHHHHHHHHhCCCCEEEEEEEecCc-------HHHHHHhC
Q psy16770 135 WNFEKNYIPKSYTTPHLILFYS--------DWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE-------QGLARRLG 199 (554)
Q Consensus 135 ~~F~~~v~~~~~~~~~lV~Fya--------~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~-------~~l~~~~~ 199 (554)
+.|++.+..-.+++.++|.|++ +||+.|.+.+|.+.++-+.... ++.|+.|+++.- .......+
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~-~~~~v~v~VG~rp~Wk~p~n~FR~d~~ 91 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE-DVHFVHVYVGNRPYWKDPANPFRKDPG 91 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC-ceEEEEEEecCCCcccCCCCccccCCC
Confidence 4555555443345558899986 5999999999999999885544 699999999873 34455556
Q ss_pred C-cCCCCcceeccC
Q psy16770 200 V-GSQLPQIALLTD 212 (554)
Q Consensus 200 v-~~~~Pti~~~~~ 212 (554)
+ .+ +||++=+++
T Consensus 92 ~lt~-vPTLlrw~~ 104 (128)
T KOG3425|consen 92 ILTA-VPTLLRWKR 104 (128)
T ss_pred ceee-cceeeEEcC
Confidence 6 76 999887764
No 264
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=96.85 E-value=0.0023 Score=60.85 Aligned_cols=84 Identities=23% Similarity=0.273 Sum_probs=55.2
Q ss_pred CCCCCcEEEEEEcccccccccchHHHHHHH--------------------------------HHh----CCCC----EEE
Q psy16770 144 KSYTTPHLILFYSDWCFACLQVEPIFKKLM--------------------------------DEL----SPLG----VGF 183 (554)
Q Consensus 144 ~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a--------------------------------~~l----~~~~----v~~ 183 (554)
....++.++.|..+.|++|+++.+.+.+.. +.+ .+.. ...
T Consensus 74 ~~~~~~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~ 153 (197)
T cd03020 74 KGNGKRVVYVFTDPDCPYCRKLEKELKPNADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAAS 153 (197)
T ss_pred CCCCCEEEEEEECCCCccHHHHHHHHhhccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCccc
Confidence 345678999999999999999988776410 000 0000 111
Q ss_pred EEEEecCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCcccHHHHHHHH
Q psy16770 184 FTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFF 232 (554)
Q Consensus 184 ~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~~i~~fl 232 (554)
...+..++..+++++||++ .|+++ +.+|+.+ .|..+.+.|.+++
T Consensus 154 ~~~~i~~~~~l~~~~gi~g-tPtii-~~~G~~~---~G~~~~~~l~~~L 197 (197)
T cd03020 154 CDNPVAANLALGRQLGVNG-TPTIV-LADGRVV---PGAPPAAQLEALL 197 (197)
T ss_pred cCchHHHHHHHHHHcCCCc-ccEEE-ECCCeEe---cCCCCHHHHHhhC
Confidence 2223334668999999998 99997 7788753 3555677776653
No 265
>KOG0910|consensus
Probab=96.83 E-value=0.005 Score=54.73 Aligned_cols=97 Identities=10% Similarity=0.099 Sum_probs=65.7
Q ss_pred cccCCcccHHHHHhhhhcCCceEEEEEecCC-ch----hHHHHHHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCce
Q psy16770 241 IVPLSATNVDAFLDNWREDNKVHALLFQRSL-PV----RLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDS 315 (554)
Q Consensus 241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~-~~----~~~~~~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Pt 315 (554)
....+.+++++.+.+ ...|+++-|...- .| ..+.-..+..+.+.++|+.++.+ ++.+++.+|+|.. .||
T Consensus 45 ~~~~s~~~~~~~Vi~---S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD--~~~ela~~Y~I~a-vPt 118 (150)
T KOG0910|consen 45 FNVQSDSEFDDKVIN---SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTD--EHPELAEDYEISA-VPT 118 (150)
T ss_pred ccccCHHHHHHHHHc---cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccc--cccchHhhcceee-eeE
Confidence 345567777776654 4666666553221 11 11122223356899999999988 7899999999997 999
Q ss_pred EEEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770 316 LLIFKEDKDRPSASITMNSIPVPTLQDITDN 346 (554)
Q Consensus 316 lvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~ 346 (554)
+++|++++... ...|-.+...|.+||+.
T Consensus 119 vlvfknGe~~d---~~vG~~~~~~l~~~i~k 146 (150)
T KOG0910|consen 119 VLVFKNGEKVD---RFVGAVPKEQLRSLIKK 146 (150)
T ss_pred EEEEECCEEee---eecccCCHHHHHHHHHH
Confidence 99999865531 34566777778888764
No 266
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=96.82 E-value=0.0048 Score=49.26 Aligned_cols=70 Identities=19% Similarity=0.430 Sum_probs=49.3
Q ss_pred CCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCc---HHHHHHhCCcCCCCcceeccCCeEEEEeCCcc
Q psy16770 147 TTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE---QGLARRLGVGSQLPQIALLTDGRTSFFKEPSF 223 (554)
Q Consensus 147 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~---~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~ 223 (554)
++.-++.|..+||++|.+....+++ .|+.+-.+|++++ ..+.+..|... +|.+.+ +|+ +.||.
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~-------~gi~y~~idi~~~~~~~~~~~~~g~~~-vP~i~i--~g~---~igG~- 71 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKE-------KGYDFEEIPLGNDARGRSLRAVTGATT-VPQVFI--GGK---LIGGS- 71 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHH-------cCCCcEEEECCCChHHHHHHHHHCCCC-cCeEEE--CCE---EEcCH-
Confidence 3445778999999999987766652 3677878888776 34555668886 999854 674 34554
Q ss_pred cHHHHHHHH
Q psy16770 224 SVQKMVEFF 232 (554)
Q Consensus 224 ~~~~i~~fl 232 (554)
++|.+|+
T Consensus 72 --~~l~~~l 78 (79)
T TIGR02190 72 --DELEAYL 78 (79)
T ss_pred --HHHHHHh
Confidence 6777665
No 267
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=96.81 E-value=0.0041 Score=53.23 Aligned_cols=101 Identities=20% Similarity=0.148 Sum_probs=73.5
Q ss_pred ccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHH---hCCCCEEEEEEEecCcHHHHHHhCCcC-CCCc
Q psy16770 131 STTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDE---LSPLGVGFFTVHVHNEQGLARRLGVGS-QLPQ 206 (554)
Q Consensus 131 ~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~---l~~~~v~~~~Vd~~~~~~l~~~~~v~~-~~Pt 206 (554)
++|.+++.... .+..+..+.|+.+ ..-..+.+.+.++|+. +++. +.|+.+|.+......+.+|+++ .+|.
T Consensus 3 e~t~e~~~~~~---~~~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~kgk-i~Fv~~d~~~~~~~~~~fgl~~~~~P~ 76 (111)
T cd03072 3 EITFENAEELT---EEGLPFLILFHDK--DDLESLKEFKQAVARQLISEKGA-INFLTADGDKFRHPLLHLGKTPADLPV 76 (111)
T ss_pred ccccccHHHHh---cCCCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcCce-EEEEEEechHhhhHHHHcCCCHhHCCE
Confidence 46667776555 3455666666622 2235688899999999 8874 9999999999888999999995 4899
Q ss_pred ceeccCCeEEEE--eCCcccHHHHHHHHHHhCC
Q psy16770 207 IALLTDGRTSFF--KEPSFSVQKMVEFFRLKLP 237 (554)
Q Consensus 207 i~~~~~g~~~~y--~~g~~~~~~i~~fl~~~~~ 237 (554)
+.+........| ..+..+.++|.+|+.+.+.
T Consensus 77 i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 77 IAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred EEEEcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence 988854332233 3455688999999987653
No 268
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.0089 Score=58.98 Aligned_cols=100 Identities=15% Similarity=0.117 Sum_probs=72.6
Q ss_pred cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHH-----HHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCce
Q psy16770 241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYL-----INAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDS 315 (554)
Q Consensus 241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~-----~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Pt 315 (554)
+..+|+.||+.-+... +..+|+++.|-..-..+.+.+ ..+..+++.+.++.++|+ .++.++.+|+|.+ .||
T Consensus 25 I~dvT~anfe~~V~~~-S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D--~~p~vAaqfgiqs-IPt 100 (304)
T COG3118 25 IKDVTEANFEQEVIQS-SREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCD--AEPMVAAQFGVQS-IPT 100 (304)
T ss_pred ceechHhHHHHHHHHH-ccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCC--cchhHHHHhCcCc-CCe
Confidence 5677888988766543 456577776643333322222 123367999999999998 7999999999997 999
Q ss_pred EEEEeCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770 316 LLIFKEDKDRPSASITMNSIPVPTLQDITDNN 347 (554)
Q Consensus 316 lvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~ 347 (554)
+++|+++ .|++ -+.|..+.+.|.+|+...
T Consensus 101 V~af~dG--qpVd-gF~G~qPesqlr~~ld~~ 129 (304)
T COG3118 101 VYAFKDG--QPVD-GFQGAQPESQLRQFLDKV 129 (304)
T ss_pred EEEeeCC--cCcc-ccCCCCcHHHHHHHHHHh
Confidence 9999974 3432 356777888999999876
No 269
>PRK13599 putative peroxiredoxin; Provisional
Probab=96.75 E-value=0.0062 Score=58.64 Aligned_cols=86 Identities=13% Similarity=0.229 Sum_probs=63.1
Q ss_pred cEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC---------------------------cHHHHHHhCCc
Q psy16770 149 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN---------------------------EQGLARRLGVG 201 (554)
Q Consensus 149 ~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~---------------------------~~~l~~~~~v~ 201 (554)
.+|+.|+++||+.|....+.+.+++++++..|+.+..|.++. +..+++.||+.
T Consensus 31 vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~yg~~ 110 (215)
T PRK13599 31 FVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQLGMI 110 (215)
T ss_pred EEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHcCCC
Confidence 356789999999999999999999999976678887777664 23577788873
Q ss_pred -------CCCCcceec-cCCeEE--EEe--CCcccHHHHHHHHHHh
Q psy16770 202 -------SQLPQIALL-TDGRTS--FFK--EPSFSVQKMVEFFRLK 235 (554)
Q Consensus 202 -------~~~Pti~~~-~~g~~~--~y~--~g~~~~~~i~~fl~~~ 235 (554)
. .|+..++ .+|++. .++ ...+..++|...+...
T Consensus 111 ~~~~~~~~-~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 111 HPGKGTNT-VRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred ccCCCCce-eeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 4 6888887 577753 222 1125778888887653
No 270
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=96.75 E-value=0.0072 Score=57.71 Aligned_cols=86 Identities=15% Similarity=0.220 Sum_probs=61.7
Q ss_pred cEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC---------------------------cHHHHHHhCCc
Q psy16770 149 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN---------------------------EQGLARRLGVG 201 (554)
Q Consensus 149 ~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~---------------------------~~~l~~~~~v~ 201 (554)
.+|+.|+++||+.|....+.+.+++++++..|+.+..|.++. +..+++.||+.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~ 107 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMI 107 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCc
Confidence 456688999999999999999999999987778888877653 24678888876
Q ss_pred ----CCCC----cceec-cCCeEEEEe-C---CcccHHHHHHHHHHh
Q psy16770 202 ----SQLP----QIALL-TDGRTSFFK-E---PSFSVQKMVEFFRLK 235 (554)
Q Consensus 202 ----~~~P----ti~~~-~~g~~~~y~-~---g~~~~~~i~~fl~~~ 235 (554)
+ .| +..++ .+|++.... + ..++.+++...+...
T Consensus 108 ~~~~~-~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~l 153 (203)
T cd03016 108 DPDAG-STLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDAL 153 (203)
T ss_pred cccCC-CCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 2 33 35555 677764322 2 124778888877654
No 271
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.62 E-value=0.0049 Score=49.26 Aligned_cols=69 Identities=14% Similarity=0.386 Sum_probs=46.1
Q ss_pred EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCc-H----HHHHHhCCcCCCCcceeccCCeEEEEeCCcccH
Q psy16770 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE-Q----GLARRLGVGSQLPQIALLTDGRTSFFKEPSFSV 225 (554)
Q Consensus 151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~-~----~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~ 225 (554)
++.|+++||++|+.+.+.++++.. .+.+..++...+ . .+.+..|+.+ +|++ |.+|+. .||.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~g~~~-~P~v--~~~g~~---igg~--- 67 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV-----KPAVVELDQHEDGSEIQDYLQELTGQRT-VPNV--FIGGKF---IGGC--- 67 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-----CcEEEEEeCCCChHHHHHHHHHHhCCCC-CCeE--EECCEE---EcCH---
Confidence 577999999999999888886543 355666666554 2 3445668886 9986 556754 4553
Q ss_pred HHHHHHHH
Q psy16770 226 QKMVEFFR 233 (554)
Q Consensus 226 ~~i~~fl~ 233 (554)
+++++..+
T Consensus 68 ~~~~~~~~ 75 (82)
T cd03419 68 DDLMALHK 75 (82)
T ss_pred HHHHHHHH
Confidence 55555544
No 272
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.62 E-value=0.0069 Score=66.48 Aligned_cols=85 Identities=13% Similarity=0.167 Sum_probs=68.4
Q ss_pred CCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCcccHH
Q psy16770 147 TTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQ 226 (554)
Q Consensus 147 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~ 226 (554)
+..-+-.|++++|++|......+.+++..- + .+..-.||+...++++.+|+|.+ +|++++ +|+. .+. |..+.+
T Consensus 116 ~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~-~-~i~~~~id~~~~~~~~~~~~v~~-VP~~~i--~~~~-~~~-g~~~~~ 188 (517)
T PRK15317 116 GDFHFETYVSLSCHNCPDVVQALNLMAVLN-P-NITHTMIDGALFQDEVEARNIMA-VPTVFL--NGEE-FGQ-GRMTLE 188 (517)
T ss_pred CCeEEEEEEcCCCCCcHHHHHHHHHHHHhC-C-CceEEEEEchhCHhHHHhcCCcc-cCEEEE--CCcE-EEe-cCCCHH
Confidence 345588899999999999999998888853 3 58999999999999999999997 999965 6653 344 445778
Q ss_pred HHHHHHHHhCCC
Q psy16770 227 KMVEFFRLKLPY 238 (554)
Q Consensus 227 ~i~~fl~~~~~~ 238 (554)
++++.+.+..++
T Consensus 189 ~~~~~~~~~~~~ 200 (517)
T PRK15317 189 EILAKLDTGAAA 200 (517)
T ss_pred HHHHHHhccccc
Confidence 898888776553
No 273
>PRK13189 peroxiredoxin; Provisional
Probab=96.57 E-value=0.0098 Score=57.62 Aligned_cols=86 Identities=15% Similarity=0.242 Sum_probs=59.9
Q ss_pred cEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC---------------------------cHHHHHHhCCc
Q psy16770 149 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN---------------------------EQGLARRLGVG 201 (554)
Q Consensus 149 ~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~---------------------------~~~l~~~~~v~ 201 (554)
.+|+.|+++||+.|....+.+.+.+++++..++.+..|.++. +..+++.||+.
T Consensus 38 vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~ 117 (222)
T PRK13189 38 FVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKLGMI 117 (222)
T ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHHhCCC
Confidence 455677899999999999999999999876677777776553 23567788865
Q ss_pred C------CCCcceec-cCCeEEEEe-----CCcccHHHHHHHHHHh
Q psy16770 202 S------QLPQIALL-TDGRTSFFK-----EPSFSVQKMVEFFRLK 235 (554)
Q Consensus 202 ~------~~Pti~~~-~~g~~~~y~-----~g~~~~~~i~~fl~~~ 235 (554)
. ..|+..++ .+|.+.... .| ++.+++...+...
T Consensus 118 ~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~g-r~~~eilr~l~al 162 (222)
T PRK13189 118 SPGKGTNTVRAVFIIDPKGIIRAILYYPQEVG-RNMDEILRLVKAL 162 (222)
T ss_pred ccccCCCceeEEEEECCCCeEEEEEecCCCCC-CCHHHHHHHHHHh
Confidence 1 15666666 577653221 23 4778887777644
No 274
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=96.54 E-value=0.019 Score=48.22 Aligned_cols=84 Identities=13% Similarity=0.141 Sum_probs=55.1
Q ss_pred cCCceEEEEEecCCchhHHHHH--------HhhccCCceEEEEEEccCCC--ChhHHhHhCCCCCCceEEEEeC-CCCCC
Q psy16770 258 EDNKVHALLFQRSLPVRLRYLI--------NAFKHRTTIVFGVIVYDQED--SSSVFQRFKVPGDKDSLLIFKE-DKDRP 326 (554)
Q Consensus 258 ~~~~~~v~~f~~~~~~~~~~~~--------~a~~~~~~v~Fg~v~~~~~~--~~~l~~k~~i~~~~Ptlvvfk~-~~~~~ 326 (554)
..++++++.|....-+..+.+. .+..+.+++.+..++++... ..+++++|+|.+ .||+++|++ +...+
T Consensus 9 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~-~Pti~~~~~~~g~~~ 87 (104)
T cd02953 9 AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFG-PPTYLFYGPGGEPEP 87 (104)
T ss_pred HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCC-CCEEEEECCCCCCCC
Confidence 3577888777554333333222 11234458889999876322 468999999997 999999986 34433
Q ss_pred CceeecCCCChhHHHhHH
Q psy16770 327 SASITMNSIPVPTLQDIT 344 (554)
Q Consensus 327 ~~~i~~~~~~~~~l~~fi 344 (554)
....|.++...|.++|
T Consensus 88 --~~~~G~~~~~~l~~~l 103 (104)
T cd02953 88 --LRLPGFLTADEFLEAL 103 (104)
T ss_pred --cccccccCHHHHHHHh
Confidence 3456777887777765
No 275
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=96.53 E-value=0.0046 Score=55.28 Aligned_cols=43 Identities=14% Similarity=0.171 Sum_probs=37.1
Q ss_pred CCcEEEEEEccc-ccccccchHHHHHHHHHhCCCCEEEEEEEecCc
Q psy16770 147 TTPHLILFYSDW-CFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE 191 (554)
Q Consensus 147 ~~~~lV~Fya~w-C~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~ 191 (554)
++++++.||+.| |++|+...|.+.++.++++ ++.+..|+.+..
T Consensus 26 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~~~vi~Is~d~~ 69 (143)
T cd03014 26 GKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--NTVVLTISADLP 69 (143)
T ss_pred CCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--CCEEEEEECCCH
Confidence 468999999998 6999999999999999985 588888887653
No 276
>KOG3192|consensus
Probab=96.53 E-value=0.0027 Score=56.04 Aligned_cols=67 Identities=22% Similarity=0.389 Sum_probs=53.5
Q ss_pred CCCCcccccCCCC--CCCHHHHHHHHHHHHHHhCCCCCCC------hhHHHHHHHHHHHHHHcCChHHHHhhhcc
Q psy16770 17 VSLDPYETLGVPR--TASLQEIRKNYKRLVVEWHPDKNND------PTAQEKFLQLTEAYNILSDAERRKQYDLF 83 (554)
Q Consensus 17 ~~~d~y~~Lgv~~--~a~~~~ik~ay~~l~~~~hPd~~~~------~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~ 83 (554)
...++|.++|... ..++.-++.-|.--+++.|||+... .-|.+.-.++++||.+|.||-+|+.|=..
T Consensus 6 ~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilk 80 (168)
T KOG3192|consen 6 SPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLK 80 (168)
T ss_pred hHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3567899997544 5566667778999999999999542 23677899999999999999999999753
No 277
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=96.50 E-value=0.018 Score=50.81 Aligned_cols=110 Identities=16% Similarity=0.193 Sum_probs=77.3
Q ss_pred cccccccccccccccCCCCCCcEEEEEEcc--ccc-cc-ccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcC-
Q psy16770 128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSD--WCF-AC-LQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGS- 202 (554)
Q Consensus 128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~--wC~-~C-~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~- 202 (554)
.+++||.+++.+..= ..++.-+|-|.-. .|. .+ ..+...+.++|+.+++.++.|+.+|.+....+.+.+|+.+
T Consensus 3 ~~~~l~~~~~~~~~C--~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~ 80 (130)
T cd02983 3 EIIELTSEDVFEETC--EEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGF 80 (130)
T ss_pred ceEEecCHHHHHhhc--cCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCcc
Confidence 467788776644221 2345666666421 122 12 3467889999999998669999999999999999999953
Q ss_pred CCCcceeccCCe-EEEEeCCcccHHHHHHHHHHhCCCC
Q psy16770 203 QLPQIALLTDGR-TSFFKEPSFSVQKMVEFFRLKLPYK 239 (554)
Q Consensus 203 ~~Pti~~~~~g~-~~~y~~g~~~~~~i~~fl~~~~~~~ 239 (554)
.+|+++++...+ ......+..+.++|.+|+.+.+...
T Consensus 81 ~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gk 118 (130)
T cd02983 81 GYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGR 118 (130)
T ss_pred CCCEEEEEecccCccccccCccCHHHHHHHHHHHHcCC
Confidence 499999985433 2221445579999999999987655
No 278
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=96.48 E-value=0.015 Score=55.32 Aligned_cols=89 Identities=16% Similarity=0.307 Sum_probs=61.8
Q ss_pred CCcEEEEEEc-ccccccccchHHHHHHHHHhCCCCEEEEEEEecCc----------------------------HHHHHH
Q psy16770 147 TTPHLILFYS-DWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE----------------------------QGLARR 197 (554)
Q Consensus 147 ~~~~lV~Fya-~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~----------------------------~~l~~~ 197 (554)
+++++|.||+ +||+.|....+.+.+++++++..|+.+..|+++.. ..+++.
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ 115 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIARS 115 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHHH
Confidence 4578888995 88999999889999999999877888888877642 256778
Q ss_pred hCCc----C-CCCcceec-cCCeEEEEe----CCcccHHHHHHHHHHh
Q psy16770 198 LGVG----S-QLPQIALL-TDGRTSFFK----EPSFSVQKMVEFFRLK 235 (554)
Q Consensus 198 ~~v~----~-~~Pti~~~-~~g~~~~y~----~g~~~~~~i~~fl~~~ 235 (554)
||+. + .+|+..++ .+|+..... ...++.+++++.+...
T Consensus 116 ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~ 163 (199)
T PTZ00253 116 YGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAF 163 (199)
T ss_pred cCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhh
Confidence 8874 1 15666666 567653322 1224667777666543
No 279
>PRK13191 putative peroxiredoxin; Provisional
Probab=96.40 E-value=0.015 Score=55.96 Aligned_cols=87 Identities=17% Similarity=0.248 Sum_probs=61.1
Q ss_pred cEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC---------------------------cHHHHHHhCCc
Q psy16770 149 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN---------------------------EQGLARRLGVG 201 (554)
Q Consensus 149 ~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~---------------------------~~~l~~~~~v~ 201 (554)
.+|+.|+++||+.|....+.+.+.+++++..|+.+..|.++. +..++++||+-
T Consensus 36 vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ygv~ 115 (215)
T PRK13191 36 FVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKRLGMI 115 (215)
T ss_pred EEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHHcCCc
Confidence 344578999999999999999999999987678888777764 23566677763
Q ss_pred C------CCCcceec-cCCeEEEE--e--CCcccHHHHHHHHHHh
Q psy16770 202 S------QLPQIALL-TDGRTSFF--K--EPSFSVQKMVEFFRLK 235 (554)
Q Consensus 202 ~------~~Pti~~~-~~g~~~~y--~--~g~~~~~~i~~fl~~~ 235 (554)
. ..|+..++ .+|++... + ...++.+++...+...
T Consensus 116 ~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 116 HAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred ccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 1 15666666 57765332 1 1225888888888654
No 280
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=96.38 E-value=0.026 Score=48.31 Aligned_cols=71 Identities=15% Similarity=0.136 Sum_probs=49.8
Q ss_pred ccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----HhhccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeC
Q psy16770 247 TNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKE 321 (554)
Q Consensus 247 ~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~ 321 (554)
+++++.+.. ..++++++.|...--++.+... .+.++.+.+.|+.++.+ .+++++++|+|.+ .||+++||+
T Consensus 3 ~~~~~~i~~--~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD--~~~~la~~~~V~~-iPTf~~fk~ 77 (114)
T cd02954 3 WAVDQAILS--EEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDID--EVPDFNKMYELYD-PPTVMFFFR 77 (114)
T ss_pred HHHHHHHhc--cCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECC--CCHHHHHHcCCCC-CCEEEEEEC
Confidence 345555542 2467788877555444433222 22255667899999988 7899999999997 999999997
Q ss_pred C
Q psy16770 322 D 322 (554)
Q Consensus 322 ~ 322 (554)
+
T Consensus 78 G 78 (114)
T cd02954 78 N 78 (114)
T ss_pred C
Confidence 4
No 281
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=96.38 E-value=0.031 Score=59.72 Aligned_cols=105 Identities=16% Similarity=0.144 Sum_probs=68.1
Q ss_pred CCccccCCcccHHHHHhhhhcCCceEEEEEecCCchhHH-----HHHHhhccCC-ceEEEEEEccCCCChhHHhHhCCCC
Q psy16770 238 YKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLR-----YLINAFKHRT-TIVFGVIVYDQEDSSSVFQRFKVPG 311 (554)
Q Consensus 238 ~~~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~-----~~~~a~~~~~-~v~Fg~v~~~~~~~~~l~~k~~i~~ 311 (554)
+..|..+|.+++++.+... ..++++++.|...--+..+ +-..+.++.+ .+.|+.++++.......+++|+|.+
T Consensus 350 ~~~Vv~L~~~nf~~~v~~~-~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~ 428 (463)
T TIGR00424 350 SNNVVSLSRPGIENLLKLE-ERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGS 428 (463)
T ss_pred CCCeEECCHHHHHHHHhhh-cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCc
Confidence 3346778889999988521 3566777766433222211 1112224444 3899999987422233457899997
Q ss_pred CCceEEEEeCCCCCCCceeec-CCCChhHHHhHHhc
Q psy16770 312 DKDSLLIFKEDKDRPSASITM-NSIPVPTLQDITDN 346 (554)
Q Consensus 312 ~~Ptlvvfk~~~~~~~~~i~~-~~~~~~~l~~fi~~ 346 (554)
+||+++|+++...+ ..|. +..+.+.|..||+.
T Consensus 429 -~PTii~Fk~g~~~~--~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 429 -FPTILFFPKHSSRP--IKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred -cceEEEEECCCCCc--eeCCCCCCCHHHHHHHHHh
Confidence 99999999876555 3465 57888899999874
No 282
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.0019 Score=60.11 Aligned_cols=53 Identities=36% Similarity=0.574 Sum_probs=47.1
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--------hhHHHHHHHHHHHHHHc
Q psy16770 19 LDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNND--------PTAQEKFLQLTEAYNIL 71 (554)
Q Consensus 19 ~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~--------~~~~~~~~~i~~Ay~~L 71 (554)
.++|++||+.+.++..+|+++|+++....|||+... ..+.+++++|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 799999999999999999999999999999999542 34778899999999854
No 283
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=96.37 E-value=0.03 Score=48.08 Aligned_cols=92 Identities=12% Similarity=0.105 Sum_probs=56.3
Q ss_pred CcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----HhhccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEE
Q psy16770 245 SATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIF 319 (554)
Q Consensus 245 t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvf 319 (554)
+.+++.+.+. .+.++++.|.....++.+... .+.++ ..++|..++.+ ...+++++|+|.. .||+++|
T Consensus 11 ~~~~~~~~i~----~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~-~~i~f~~Vd~~--~~~~l~~~~~v~~-vPt~l~f 82 (113)
T cd02989 11 DEKEFFEIVK----SSERVVCHFYHPEFFRCKIMDKHLEILAKKH-LETKFIKVNAE--KAPFLVEKLNIKV-LPTVILF 82 (113)
T ss_pred CHHHHHHHHh----CCCcEEEEEECCCCccHHHHHHHHHHHHHHc-CCCEEEEEEcc--cCHHHHHHCCCcc-CCEEEEE
Confidence 3367777774 345666666443333322221 11233 45899999887 6888999999997 9999999
Q ss_pred eCCCCCC-----CceeecCCCChhHHHhHH
Q psy16770 320 KEDKDRP-----SASITMNSIPVPTLQDIT 344 (554)
Q Consensus 320 k~~~~~~-----~~~i~~~~~~~~~l~~fi 344 (554)
+++..-- ...-..++++...++.|+
T Consensus 83 k~G~~v~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 83 KNGKTVDRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred ECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence 9753210 111112566677777665
No 284
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=96.35 E-value=0.015 Score=49.95 Aligned_cols=79 Identities=18% Similarity=0.227 Sum_probs=53.5
Q ss_pred cccCCcccHHHHHhhhhcCCceEEEEEecCCc-------hhHHHHHHhh-ccCCceEEEEEEccCCCChhHHhHhCCCCC
Q psy16770 241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLP-------VRLRYLINAF-KHRTTIVFGVIVYDQEDSSSVFQRFKVPGD 312 (554)
Q Consensus 241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~-------~~~~~~~~a~-~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~ 312 (554)
+..++.+++++.+.+ .++++++.|....- +.+...+..+ ...+.+.|+.++|+...+.+++++|+|..
T Consensus 3 v~~l~~~~f~~~i~~---~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~- 78 (114)
T cd02992 3 VIVLDAASFNSALLG---SPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTG- 78 (114)
T ss_pred eEECCHHhHHHHHhc---CCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCC-
Confidence 456678888888764 34677777744332 2222222222 22346899999987555778999999997
Q ss_pred CceEEEEeCCC
Q psy16770 313 KDSLLIFKEDK 323 (554)
Q Consensus 313 ~Ptlvvfk~~~ 323 (554)
.|++++|+++.
T Consensus 79 ~Pt~~lf~~~~ 89 (114)
T cd02992 79 YPTLRYFPPFS 89 (114)
T ss_pred CCEEEEECCCC
Confidence 99999998754
No 285
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=96.33 E-value=0.01 Score=50.08 Aligned_cols=88 Identities=19% Similarity=0.157 Sum_probs=61.8
Q ss_pred ccccccccccccCCCCCCcEEEEEEcccccccc---cchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770 131 STTHWNFEKNYIPKSYTTPHLILFYSDWCFACL---QVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI 207 (554)
Q Consensus 131 ~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~---~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti 207 (554)
.++..++++.+. .... .|.|.+..|..|. ..+=+.-++.+.+.+. +..+.|+-..+..|..+||+.. +|++
T Consensus 13 ~vd~~~ld~~l~---~~~~-~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~-~~~avv~~~~e~~L~~r~gv~~-~PaL 86 (107)
T PF07449_consen 13 RVDADTLDAFLA---APGD-AVLFFAGDPARFPETADVAVILPELVKAFPGR-FRGAVVARAAERALAARFGVRR-WPAL 86 (107)
T ss_dssp EE-CCCHHHHHH---CCSC-EEEEESS-TTTSTTCCHHHHHHHHHHCTSTTS-EEEEEEEHHHHHHHHHHHT-TS-SSEE
T ss_pred eechhhHHHHHh---CCCc-EEEEECCCCCcCcccccceeEcHHHHHhhhCc-cceEEECchhHHHHHHHhCCcc-CCeE
Confidence 456777777773 3334 4556665554444 3344666677777764 8888888888999999999996 9999
Q ss_pred eeccCCeEEEEeCCccc
Q psy16770 208 ALLTDGRTSFFKEPSFS 224 (554)
Q Consensus 208 ~~~~~g~~~~y~~g~~~ 224 (554)
+++++|+..-.-.|.++
T Consensus 87 vf~R~g~~lG~i~gi~d 103 (107)
T PF07449_consen 87 VFFRDGRYLGAIEGIRD 103 (107)
T ss_dssp EEEETTEEEEEEESSST
T ss_pred EEEECCEEEEEecCeec
Confidence 99999998777766655
No 286
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=96.32 E-value=0.019 Score=49.01 Aligned_cols=82 Identities=4% Similarity=-0.065 Sum_probs=53.6
Q ss_pred CCceEEEEEecCCchhHHHH-----HHhhccCC-ceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCCceeec
Q psy16770 259 DNKVHALLFQRSLPVRLRYL-----INAFKHRT-TIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITM 332 (554)
Q Consensus 259 ~~~~~v~~f~~~~~~~~~~~-----~~a~~~~~-~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~ 332 (554)
.++++++.|....-+..+.. ..+..+.+ .+.|+.++++ .+..++++++|.+ .||+++|+++.. .....
T Consensus 23 ~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d--~~~~l~~~~~V~~-~Pt~~i~~~g~~---~~~~~ 96 (111)
T cd02963 23 FKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAG--HERRLARKLGAHS-VPAIVGIINGQV---TFYHD 96 (111)
T ss_pred CCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecc--ccHHHHHHcCCcc-CCEEEEEECCEE---EEEec
Confidence 45677776644322221111 11123333 5889999887 5788999999997 999999986522 12346
Q ss_pred CCCChhHHHhHHhc
Q psy16770 333 NSIPVPTLQDITDN 346 (554)
Q Consensus 333 ~~~~~~~l~~fi~~ 346 (554)
|..+...|.+||+.
T Consensus 97 G~~~~~~l~~~i~~ 110 (111)
T cd02963 97 SSFTKQHVVDFVRK 110 (111)
T ss_pred CCCCHHHHHHHHhc
Confidence 77788888888864
No 287
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=96.24 E-value=0.015 Score=49.71 Aligned_cols=97 Identities=16% Similarity=0.155 Sum_probs=66.9
Q ss_pred cccccccccccCCCCCCcEEEEEE----cccccccccchHHHHHHHHHhC-CCCEEEEEEEecCcHHHHHHhCCcC-C--
Q psy16770 132 TTHWNFEKNYIPKSYTTPHLILFY----SDWCFACLQVEPIFKKLMDELS-PLGVGFFTVHVHNEQGLARRLGVGS-Q-- 203 (554)
Q Consensus 132 Lt~~~F~~~v~~~~~~~~~lV~Fy----a~wC~~C~~l~p~~~~~a~~l~-~~~v~~~~Vd~~~~~~l~~~~~v~~-~-- 203 (554)
+|.+|..... ..+.++.|| +..-..-..+...+.++|+.++ + ++.|+.+|.+......+.+|++. .
T Consensus 4 ~~~en~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~g-ki~Fv~~D~~~~~~~l~~fgl~~~~~~ 77 (111)
T cd03073 4 RTKDNRAQFT-----KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDR-KLNFAVADKEDFSHELEEFGLDFSGGE 77 (111)
T ss_pred eccchHHHhc-----cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCC-eEEEEEEcHHHHHHHHHHcCCCcccCC
Confidence 4555555442 234455554 2222233557889999999999 6 49999999999888999999985 4
Q ss_pred CCcceeccCCeEEEE-eCCcc-cHHHHHHHHHHh
Q psy16770 204 LPQIALLTDGRTSFF-KEPSF-SVQKMVEFFRLK 235 (554)
Q Consensus 204 ~Pti~~~~~g~~~~y-~~g~~-~~~~i~~fl~~~ 235 (554)
+|++.++.... ..| ..+.. +.++|.+|+.+.
T Consensus 78 ~P~~~i~~~~~-~KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 78 KPVVAIRTAKG-KKYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred CCEEEEEeCCC-CccCCCcccCCHHHHHHHHHHh
Confidence 89999885332 333 33445 779999998764
No 288
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=96.14 E-value=0.056 Score=46.27 Aligned_cols=102 Identities=16% Similarity=0.254 Sum_probs=67.2
Q ss_pred cCCcccHHHHHhhhhcCCceEEEEEecCC-----chhHHHHH-HhhccCCceEEEEEEcc---CCCChhHHhHhCCCCC-
Q psy16770 243 PLSATNVDAFLDNWREDNKVHALLFQRSL-----PVRLRYLI-NAFKHRTTIVFGVIVYD---QEDSSSVFQRFKVPGD- 312 (554)
Q Consensus 243 ~~t~~~~~~fl~~~~~~~~~~v~~f~~~~-----~~~~~~~~-~a~~~~~~v~Fg~v~~~---~~~~~~l~~k~~i~~~- 312 (554)
.+++-++++.+. ..+.+++=|.-.- ......++ .+.+-.+++-+|.|-.. ...+.+++++|+++..
T Consensus 8 ~LD~~tFdKvi~----kf~~~LVKFD~ayPyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~ 83 (126)
T PF07912_consen 8 PLDELTFDKVIP----KFKYVLVKFDVAYPYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKED 83 (126)
T ss_dssp EESTTHHHHHGG----GSSEEEEEEEESS--CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC
T ss_pred eccceehhheec----cCceEEEEEeccCCCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCccc
Confidence 455667888884 4677777774321 22344444 33445677777776543 3668899999999754
Q ss_pred CceEEEEeCCCCCCCceeecCCCChhHHHhHHhcCC
Q psy16770 313 KDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNP 348 (554)
Q Consensus 313 ~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~~ 348 (554)
+|.+.+|..+.+.|...-..++++.+.|..|++.|.
T Consensus 84 fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t 119 (126)
T PF07912_consen 84 FPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNT 119 (126)
T ss_dssp -SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTS
T ss_pred CCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCC
Confidence 899999998777775544488899999999999884
No 289
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=96.09 E-value=0.015 Score=45.30 Aligned_cols=66 Identities=18% Similarity=0.403 Sum_probs=45.2
Q ss_pred EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHH---HHHHhCCcCCCCcceeccCCeEEEEeCCcccHHH
Q psy16770 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQG---LARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQK 227 (554)
Q Consensus 151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~---l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~~ 227 (554)
++.|..+||+.|.+....+++ .++.+..+|.+.+.. +....|... +|.+ |.+|+. .|| .++
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~-------~~i~~~~~~v~~~~~~~~~~~~~g~~~-vP~i--fi~g~~---igg---~~~ 66 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE-------NGISYEEIPLGKDITGRSLRAVTGAMT-VPQV--FIDGEL---IGG---SDD 66 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH-------cCCCcEEEECCCChhHHHHHHHhCCCC-cCeE--EECCEE---EeC---HHH
Confidence 567999999999987655552 357788888876542 333347776 9997 456754 355 377
Q ss_pred HHHHH
Q psy16770 228 MVEFF 232 (554)
Q Consensus 228 i~~fl 232 (554)
|.+|+
T Consensus 67 l~~~l 71 (72)
T cd03029 67 LEKYF 71 (72)
T ss_pred HHHHh
Confidence 77775
No 290
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=96.08 E-value=0.057 Score=44.44 Aligned_cols=72 Identities=11% Similarity=0.233 Sum_probs=47.9
Q ss_pred cccHHHHHhhhhcCCceEEEEEecCCchhHHHHHHh-----hccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEe
Q psy16770 246 ATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINA-----FKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFK 320 (554)
Q Consensus 246 ~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~a-----~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk 320 (554)
.+++++.+... .++++++.|........+..... ..+...+.|..++++ ...+++++|++.+ .||+++|+
T Consensus 2 ~~~~~~~~~~~--~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~--~~~~~~~~~~i~~-~Pt~~~~~ 76 (97)
T cd02984 2 EEEFEELLKSD--ASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAE--ELPEISEKFEITA-VPTFVFFR 76 (97)
T ss_pred HHHHHHHHhhC--CCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccc--cCHHHHHhcCCcc-ccEEEEEE
Confidence 45677767541 25777777755444333322221 133568889888876 6788999999997 99999998
Q ss_pred CC
Q psy16770 321 ED 322 (554)
Q Consensus 321 ~~ 322 (554)
++
T Consensus 77 ~g 78 (97)
T cd02984 77 NG 78 (97)
T ss_pred CC
Confidence 64
No 291
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=96.05 E-value=0.066 Score=44.87 Aligned_cols=91 Identities=10% Similarity=0.128 Sum_probs=56.7
Q ss_pred cCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHH-----hhccC-CceEEEEEEccCCCChhHHhHhCCCCCCceE
Q psy16770 243 PLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLIN-----AFKHR-TTIVFGVIVYDQEDSSSVFQRFKVPGDKDSL 316 (554)
Q Consensus 243 ~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~-----a~~~~-~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptl 316 (554)
+.|.+++++.+. .++++++.|...--++.+.... +..+. ..+.|+.++.+ +.+++++|+|.. .||+
T Consensus 4 i~~~~~~~~~i~----~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d---~~~~~~~~~v~~-~Pt~ 75 (102)
T cd02948 4 INNQEEWEELLS----NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD---TIDTLKRYRGKC-EPTF 75 (102)
T ss_pred ccCHHHHHHHHc----cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC---CHHHHHHcCCCc-CcEE
Confidence 346677888773 4677777775444333222221 11333 34789999875 568899999997 9999
Q ss_pred EEEeCCCCCCCceeecCCCChhHHHhHHh
Q psy16770 317 LIFKEDKDRPSASITMNSIPVPTLQDITD 345 (554)
Q Consensus 317 vvfk~~~~~~~~~i~~~~~~~~~l~~fi~ 345 (554)
++|+++... .. ..| .+...+.++|.
T Consensus 76 ~~~~~g~~~--~~-~~G-~~~~~~~~~i~ 100 (102)
T cd02948 76 LFYKNGELV--AV-IRG-ANAPLLNKTIT 100 (102)
T ss_pred EEEECCEEE--EE-Eec-CChHHHHHHHh
Confidence 999864321 11 222 35566777765
No 292
>KOG3414|consensus
Probab=96.05 E-value=0.023 Score=48.44 Aligned_cols=76 Identities=11% Similarity=0.343 Sum_probs=65.0
Q ss_pred cccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeEE
Q psy16770 138 EKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTS 216 (554)
Q Consensus 138 ~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~ 216 (554)
+..|. .+..+.++|-|-.+|.+.|.++-..+.++++.+... ..+.-||.++-+.+.+-|++.. .||+++|-+++.+
T Consensus 15 dqaI~-~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf-a~IylvdideV~~~~~~~~l~~-p~tvmfFfn~kHm 90 (142)
T KOG3414|consen 15 DQAIL-STEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF-AVIYLVDIDEVPDFVKMYELYD-PPTVMFFFNNKHM 90 (142)
T ss_pred HHHHh-cccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc-eEEEEEecchhhhhhhhhcccC-CceEEEEEcCceE
Confidence 44444 346789999999999999999999999999999875 7888999999999999999997 9999998666543
No 293
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=96.04 E-value=0.052 Score=45.59 Aligned_cols=54 Identities=15% Similarity=0.183 Sum_probs=43.0
Q ss_pred CceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770 286 TTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDN 346 (554)
Q Consensus 286 ~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~ 346 (554)
..+.++.++++ ...+++++|+|.+ .|++++|+++. . ..+.|..+.+.|.+|++.
T Consensus 49 ~~~~~~~vd~~--~~~~~~~~~~I~~-~Pt~~l~~~~~--~--~~~~G~~~~~~l~~~~~~ 102 (104)
T cd03000 49 SPVRVGKLDAT--AYSSIASEFGVRG-YPTIKLLKGDL--A--YNYRGPRTKDDIVEFANR 102 (104)
T ss_pred CcEEEEEEECc--cCHhHHhhcCCcc-ccEEEEEcCCC--c--eeecCCCCHHHHHHHHHh
Confidence 35888989886 5789999999997 99999997532 2 346778888899998874
No 294
>PLN02309 5'-adenylylsulfate reductase
Probab=95.97 E-value=0.031 Score=59.66 Aligned_cols=101 Identities=15% Similarity=0.190 Sum_probs=66.7
Q ss_pred CccccCCcccHHHHHhhhhcCCceEEEEEecCCc-------hhHHHHHHhhccC-CceEEEEEEccCCCChhHHh-HhCC
Q psy16770 239 KLIVPLSATNVDAFLDNWREDNKVHALLFQRSLP-------VRLRYLINAFKHR-TTIVFGVIVYDQEDSSSVFQ-RFKV 309 (554)
Q Consensus 239 ~~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~-------~~~~~~~~a~~~~-~~v~Fg~v~~~~~~~~~l~~-k~~i 309 (554)
..+..++.+++++.+..- ..+++.++.|...-- +.+..+ +..+. ..+.|+.++++. .+.++++ +|+|
T Consensus 345 ~~Vv~Lt~~nfe~ll~~~-~~~k~vlV~FyApWC~~Cq~m~p~~e~L--A~~~~~~~V~f~kVD~d~-~~~~la~~~~~I 420 (457)
T PLN02309 345 QNVVALSRAGIENLLKLE-NRKEPWLVVLYAPWCPFCQAMEASYEEL--AEKLAGSGVKVAKFRADG-DQKEFAKQELQL 420 (457)
T ss_pred CCcEECCHHHHHHHHHhh-cCCCeEEEEEECCCChHHHHHHHHHHHH--HHHhccCCeEEEEEECCC-cchHHHHhhCCC
Confidence 346677888898887522 356677776643322 222222 22333 359999999862 2456775 6999
Q ss_pred CCCCceEEEEeCCCCCCCceeec-CCCChhHHHhHHhc
Q psy16770 310 PGDKDSLLIFKEDKDRPSASITM-NSIPVPTLQDITDN 346 (554)
Q Consensus 310 ~~~~Ptlvvfk~~~~~~~~~i~~-~~~~~~~l~~fi~~ 346 (554)
.+ +||+++|+++...+ ..|. +..+...|..||+.
T Consensus 421 ~~-~PTil~f~~g~~~~--v~Y~~~~R~~~~L~~fv~~ 455 (457)
T PLN02309 421 GS-FPTILLFPKNSSRP--IKYPSEKRDVDSLLSFVNS 455 (457)
T ss_pred ce-eeEEEEEeCCCCCe--eecCCCCcCHHHHHHHHHH
Confidence 97 99999999876554 4465 46788899999974
No 295
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=95.95 E-value=0.014 Score=44.77 Aligned_cols=55 Identities=22% Similarity=0.500 Sum_probs=38.7
Q ss_pred EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHH----HHHhCCcCCCCcceeccCCeE
Q psy16770 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGL----ARRLGVGSQLPQIALLTDGRT 215 (554)
Q Consensus 151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l----~~~~~v~~~~Pti~~~~~g~~ 215 (554)
++.|+++||++|+++.+.+++. ++.+..+|...+... .+..+... +|++ |.+|+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~-------~i~~~~~di~~~~~~~~~l~~~~~~~~-~P~~--~~~~~~ 60 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESL-------GIEFEEIDILEDGELREELKELSGWPT-VPQI--FINGEF 60 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------CCcEEEEECCCCHHHHHHHHHHhCCCC-cCEE--EECCEE
Confidence 4678999999999888777643 467778888876644 33446665 8876 446643
No 296
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=95.88 E-value=0.54 Score=45.46 Aligned_cols=90 Identities=12% Similarity=0.092 Sum_probs=60.3
Q ss_pred ceEEEEEc-CCCCcchhHHHHHHHHHhhccCCCCceEEEEEecccchHHHHhhCCCCCCccccceEEEEEEecCCCeeEE
Q psy16770 369 KLCVVLFS-EDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPEDSSEISLHIAAMWRMDYKKIKYG 447 (554)
Q Consensus 369 ~lcvvl~~-~~~~~~~~~~~~l~~~a~~~~~~~~~v~F~~vd~~~q~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ky~ 447 (554)
+.++|.|. +....+....+.+.++|++ +++ .+.|+.+|+++++++++.+ +. .++|.+...+ ++..+.
T Consensus 53 ~~vlV~FyApWC~~Ck~~~P~~e~la~~--~~~-~v~~~~VD~~~~~~l~~~~-------~I-~~~PTl~~f~-~G~~v~ 120 (224)
T PTZ00443 53 GPWFVKFYAPWCSHCRKMAPAWERLAKA--LKG-QVNVADLDATRALNLAKRF-------AI-KGYPTLLLFD-KGKMYQ 120 (224)
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHHHH--cCC-CeEEEEecCcccHHHHHHc-------CC-CcCCEEEEEE-CCEEEE
Confidence 34555554 5566677788899999998 864 5999999999999999887 11 3555443333 233332
Q ss_pred EecCCCCCcccccchhhHHHHHHHHhhhcCCC
Q psy16770 448 WLLGDAVDDWKDYNTTKDRLDAGLRSLVNDPY 479 (554)
Q Consensus 448 ~~~~~~~~~~~~~~~t~e~l~~fl~~~~~g~~ 479 (554)
...| ..+.+.|.+|+.+..+...
T Consensus 121 ~~~G---------~~s~e~L~~fi~~~~~~~~ 143 (224)
T PTZ00443 121 YEGG---------DRSTEKLAAFALGDFKKAL 143 (224)
T ss_pred eeCC---------CCCHHHHHHHHHHHHHhhc
Confidence 2233 3578899999888775443
No 297
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=95.76 E-value=0.044 Score=46.87 Aligned_cols=77 Identities=14% Similarity=0.086 Sum_probs=49.4
Q ss_pred cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----HhhccCCceEEEEEEccCCCChhHHhHhCCCCCCce
Q psy16770 241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDS 315 (554)
Q Consensus 241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Pt 315 (554)
+..++.+++.+.+... +.++++++.|.....++.+... .+.++ ..+.|..++++ .+ +++++|+|.. .||
T Consensus 6 v~~i~~~~f~~~i~~~-~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~-~~v~f~~vd~~--~~-~l~~~~~i~~-~Pt 79 (113)
T cd02957 6 VREISSKEFLEEVTKA-SKGTRVVVHFYEPGFPRCKILDSHLEELAAKY-PETKFVKINAE--KA-FLVNYLDIKV-LPT 79 (113)
T ss_pred EEEEcHHHHHHHHHcc-CCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHC-CCcEEEEEEch--hh-HHHHhcCCCc-CCE
Confidence 3455667787777531 1136777766544433322221 12233 46889999876 34 9999999997 999
Q ss_pred EEEEeCCC
Q psy16770 316 LLIFKEDK 323 (554)
Q Consensus 316 lvvfk~~~ 323 (554)
+++|+++.
T Consensus 80 ~~~f~~G~ 87 (113)
T cd02957 80 LLVYKNGE 87 (113)
T ss_pred EEEEECCE
Confidence 99999853
No 298
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=95.76 E-value=0.014 Score=45.57 Aligned_cols=66 Identities=15% Similarity=0.344 Sum_probs=46.1
Q ss_pred EEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHh---CCcCCCCcceeccCCeEEEEeCCcccHHHH
Q psy16770 152 ILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRL---GVGSQLPQIALLTDGRTSFFKEPSFSVQKM 228 (554)
Q Consensus 152 V~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~---~v~~~~Pti~~~~~g~~~~y~~g~~~~~~i 228 (554)
..|..++|++|++....+++ .|+.+..+|.++++.....+ |..+ +|++.+ +|. ...+|. +.+.|
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~-------~~i~~~~~di~~~~~~~~~~~~~g~~~-vP~v~~--~g~--~~~~G~-~~~~~ 68 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE-------HGIAFEEINIDEQPEAIDYVKAQGFRQ-VPVIVA--DGD--LSWSGF-RPDKL 68 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------CCCceEEEECCCCHHHHHHHHHcCCcc-cCEEEE--CCC--cEEecc-CHHHH
Confidence 46788999999987766653 36888899999887666655 7776 999755 443 234554 45666
Q ss_pred HH
Q psy16770 229 VE 230 (554)
Q Consensus 229 ~~ 230 (554)
.+
T Consensus 69 ~~ 70 (72)
T TIGR02194 69 KA 70 (72)
T ss_pred Hh
Confidence 54
No 299
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=95.76 E-value=0.092 Score=41.94 Aligned_cols=79 Identities=14% Similarity=0.204 Sum_probs=51.8
Q ss_pred CceEEEEEecCCchhHHHHHHh---h-ccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCCC
Q psy16770 260 NKVHALLFQRSLPVRLRYLINA---F-KHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSI 335 (554)
Q Consensus 260 ~~~~v~~f~~~~~~~~~~~~~a---~-~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~ 335 (554)
.++.+++|....-+........ + +..+.+.|+.++++ .+..++++|++.+ .|++++|+++.. . ....+..
T Consensus 10 ~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~v~~-~P~~~~~~~g~~--~-~~~~g~~ 83 (93)
T cd02947 10 AKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVD--ENPELAEEYGVRS-IPTFLFFKNGKE--V-DRVVGAD 83 (93)
T ss_pred CCcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECC--CChhHHHhcCccc-ccEEEEEECCEE--E-EEEecCC
Confidence 3677777755433322222211 1 22578999999887 5788999999997 999999987532 1 2344555
Q ss_pred ChhHHHhHH
Q psy16770 336 PVPTLQDIT 344 (554)
Q Consensus 336 ~~~~l~~fi 344 (554)
+.+.|.+||
T Consensus 84 ~~~~l~~~i 92 (93)
T cd02947 84 PKEELEEFL 92 (93)
T ss_pred CHHHHHHHh
Confidence 667777776
No 300
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=95.75 E-value=0.098 Score=43.27 Aligned_cols=81 Identities=11% Similarity=0.134 Sum_probs=53.6
Q ss_pred CCceEEEEEecCCchhHHHHHH-----hhccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCCceeecC
Q psy16770 259 DNKVHALLFQRSLPVRLRYLIN-----AFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMN 333 (554)
Q Consensus 259 ~~~~~v~~f~~~~~~~~~~~~~-----a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~ 333 (554)
.+++++++|....-+..+.... +.++.+.+.|..++.+ .+++++++++|.+ .|++++|+++ + .. ....+
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d--~~~~l~~~~~v~~-vPt~~i~~~g-~-~v-~~~~g 85 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDID--EDQEIAEAAGIMG-TPTVQFFKDK-E-LV-KEISG 85 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECC--CCHHHHHHCCCee-ccEEEEEECC-e-EE-EEEeC
Confidence 5777777776544333222221 1144567889999886 6889999999997 9999999863 2 21 23455
Q ss_pred CCChhHHHhHHh
Q psy16770 334 SIPVPTLQDITD 345 (554)
Q Consensus 334 ~~~~~~l~~fi~ 345 (554)
..+.+.+.+|++
T Consensus 86 ~~~~~~~~~~l~ 97 (97)
T cd02949 86 VKMKSEYREFIE 97 (97)
T ss_pred CccHHHHHHhhC
Confidence 666777777763
No 301
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=95.73 E-value=0.063 Score=48.65 Aligned_cols=78 Identities=14% Similarity=0.248 Sum_probs=52.4
Q ss_pred cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----HhhccC-CceEEEEEEccCCCChhHHhHhCCCCC--
Q psy16770 241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKHR-TTIVFGVIVYDQEDSSSVFQRFKVPGD-- 312 (554)
Q Consensus 241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~-~~v~Fg~v~~~~~~~~~l~~k~~i~~~-- 312 (554)
+..++.+++++.+.. ...+++++.|....-++.+... .+.++. ..+.|+.++++ .+++++++|+|...
T Consensus 30 v~~l~~~~f~~~l~~--~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd--~~~~la~~~~V~~~~~ 105 (152)
T cd02962 30 IKYFTPKTLEEELER--DKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIG--RFPNVAEKFRVSTSPL 105 (152)
T ss_pred cEEcCHHHHHHHHHh--cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECC--CCHHHHHHcCceecCC
Confidence 556677888887754 2355667766544433322222 122333 35999999988 68899999999742
Q ss_pred ---CceEEEEeCC
Q psy16770 313 ---KDSLLIFKED 322 (554)
Q Consensus 313 ---~Ptlvvfk~~ 322 (554)
.||+++|+++
T Consensus 106 v~~~PT~ilf~~G 118 (152)
T cd02962 106 SKQLPTIILFQGG 118 (152)
T ss_pred cCCCCEEEEEECC
Confidence 7999999874
No 302
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.65 E-value=0.043 Score=60.23 Aligned_cols=84 Identities=15% Similarity=0.231 Sum_probs=66.0
Q ss_pred CCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCcccHH
Q psy16770 147 TTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQ 226 (554)
Q Consensus 147 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~ 226 (554)
+...+-.|+++.|++|......+.+++..-. .+..-.+|+...++++.+|++.+ +|++++ +|+. .+. |..+.+
T Consensus 117 ~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p--~i~~~~id~~~~~~~~~~~~v~~-VP~~~i--~~~~-~~~-g~~~~~ 189 (515)
T TIGR03140 117 GPLHFETYVSLTCQNCPDVVQALNQMALLNP--NISHTMIDGALFQDEVEALGIQG-VPAVFL--NGEE-FHN-GRMDLA 189 (515)
T ss_pred CCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC--CceEEEEEchhCHHHHHhcCCcc-cCEEEE--CCcE-EEe-cCCCHH
Confidence 3455778999999999988888888877643 48888899999999999999997 999876 5653 344 445778
Q ss_pred HHHHHHHHhCC
Q psy16770 227 KMVEFFRLKLP 237 (554)
Q Consensus 227 ~i~~fl~~~~~ 237 (554)
.+++.+.+..+
T Consensus 190 ~~~~~l~~~~~ 200 (515)
T TIGR03140 190 ELLEKLEETAG 200 (515)
T ss_pred HHHHHHhhccC
Confidence 88777776533
No 303
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=95.55 E-value=0.094 Score=47.56 Aligned_cols=44 Identities=18% Similarity=0.275 Sum_probs=35.0
Q ss_pred CCCCCcEEEEEEcccccccccchHHHHHHHHHh--CCCCEEEEEEEe
Q psy16770 144 KSYTTPHLILFYSDWCFACLQVEPIFKKLMDEL--SPLGVGFFTVHV 188 (554)
Q Consensus 144 ~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l--~~~~v~~~~Vd~ 188 (554)
....++.|++|+...|++|.++.+.+.++.+.+ .+ .+.+..++.
T Consensus 9 ~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~-~v~~~~~~~ 54 (162)
T PF13462_consen 9 NPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPG-KVKFVFRPV 54 (162)
T ss_dssp -TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTT-TEEEEEEES
T ss_pred CCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCC-ceEEEEEEc
Confidence 345678899999999999999999999888887 44 588877765
No 304
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=95.55 E-value=0.11 Score=43.03 Aligned_cols=93 Identities=15% Similarity=0.213 Sum_probs=55.5
Q ss_pred ceEEEEEcCCCCc--chhHHHHHHHHHhhcc--C----CCCceEEEEEecccchHHHHhhCCCCCCccccceEEEEEEec
Q psy16770 369 KLCVVLFSEDSPE--HDASRHTLRRFAQESR--F----VHNNIAFMYVFIEKQPEFVNALTSPEDSSEISLHIAAMWRMD 440 (554)
Q Consensus 369 ~lcvvl~~~~~~~--~~~~~~~l~~~a~~~~--~----~~~~v~F~~vd~~~q~~~~~~~~~~~~~~~~~~~~~~v~~~~ 440 (554)
..|+|+|+.++++ .+...+.+..+|.+.. + .+.++.|.+.--+.-.++++.|.+ +.+..|.++++...
T Consensus 15 ~p~lvlf~D~Edeg~l~~A~~llQpiAd~~~aka~~k~~dap~~f~~a~ede~tdsLRDf~n---L~d~~P~LviLDip- 90 (116)
T cd03071 15 GPCLVLFVDSEDEGESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFFVAGEDDMTDSLRDYTN---LPEAAPLLTILDMS- 90 (116)
T ss_pred CceEEEEecccchhhHHHHHHHHHHHHHHHHHHhhccCCCcceeeeeeccchHHHHHHHhcC---CCccCceEEEEecc-
Confidence 5688999855433 5677788888887631 1 122344444333345666666632 22323555555433
Q ss_pred CCCeeEEEecCCCCCcccccchhhHHHHHHHHhhh
Q psy16770 441 YKKIKYGWLLGDAVDDWKDYNTTKDRLDAGLRSLV 475 (554)
Q Consensus 441 ~~~~ky~~~~~~~~~~~~~~~~t~e~l~~fl~~~~ 475 (554)
++.+|. ++. .+.|.+++.+|+.+++
T Consensus 91 -~r~~~v-~~~--------eeIT~e~~~~fv~~yl 115 (116)
T cd03071 91 -ARAKYV-MDV--------EEITPAIVEAFVSDFL 115 (116)
T ss_pred -ccceEe-Cch--------HhcCHHHHHHHHHHhh
Confidence 556774 333 2689999999999986
No 305
>PHA02278 thioredoxin-like protein
Probab=95.54 E-value=0.1 Score=43.92 Aligned_cols=89 Identities=11% Similarity=0.122 Sum_probs=53.7
Q ss_pred ccHHHHHhhhhcCCceEEEEEecCCchhHHHHHH-----hhccCCceEEEEEEccCCC--ChhHHhHhCCCCCCceEEEE
Q psy16770 247 TNVDAFLDNWREDNKVHALLFQRSLPVRLRYLIN-----AFKHRTTIVFGVIVYDQED--SSSVFQRFKVPGDKDSLLIF 319 (554)
Q Consensus 247 ~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~-----a~~~~~~v~Fg~v~~~~~~--~~~l~~k~~i~~~~Ptlvvf 319 (554)
+++.+.+ ..++++++.|...--.+.+...- +..+...+.|..++.+... .++++++|+|.+ .||+++|
T Consensus 5 ~~~~~~i----~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~-iPT~i~f 79 (103)
T PHA02278 5 VDLNTAI----RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMS-TPVLIGY 79 (103)
T ss_pred HHHHHHH----hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCcc-ccEEEEE
Confidence 4555555 24667777665443333332221 1123345779999887321 268999999997 9999999
Q ss_pred eCCCCCCCceeecCCCChhHHHhH
Q psy16770 320 KEDKDRPSASITMNSIPVPTLQDI 343 (554)
Q Consensus 320 k~~~~~~~~~i~~~~~~~~~l~~f 343 (554)
+++.. . ....|..+.+.|.+|
T Consensus 80 k~G~~-v--~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 80 KDGQL-V--KKYEDQVTPMQLQEL 100 (103)
T ss_pred ECCEE-E--EEEeCCCCHHHHHhh
Confidence 98533 1 233455666666654
No 306
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=95.53 E-value=0.17 Score=42.50 Aligned_cols=74 Identities=18% Similarity=0.219 Sum_probs=46.9
Q ss_pred CcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----HhhccCCceEEEEEEccCCC-ChhHHhHhCCCCCCceEEE
Q psy16770 245 SATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKHRTTIVFGVIVYDQED-SSSVFQRFKVPGDKDSLLI 318 (554)
Q Consensus 245 t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~~~v~Fg~v~~~~~~-~~~l~~k~~i~~~~Ptlvv 318 (554)
|.+++++.+.. ..++++++.|...--++.+... .+..+ +.+.|+.++.+... ..+++++|+|.+ .||+++
T Consensus 2 ~~~~~~~~i~~--~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~-~Pt~~~ 77 (103)
T cd02985 2 SVEELDEALKK--AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIE-VPHFLF 77 (103)
T ss_pred CHHHHHHHHHH--cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCc-CCEEEE
Confidence 34567777653 2367777777544333222111 12244 67899999876321 137999999997 999999
Q ss_pred EeCC
Q psy16770 319 FKED 322 (554)
Q Consensus 319 fk~~ 322 (554)
|+++
T Consensus 78 ~~~G 81 (103)
T cd02985 78 YKDG 81 (103)
T ss_pred EeCC
Confidence 9864
No 307
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=95.51 E-value=0.016 Score=46.08 Aligned_cols=58 Identities=21% Similarity=0.446 Sum_probs=40.8
Q ss_pred EEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHH----HhCCcCCCCcceeccCCeEEEEeCCc
Q psy16770 152 ILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLAR----RLGVGSQLPQIALLTDGRTSFFKEPS 222 (554)
Q Consensus 152 V~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~----~~~v~~~~Pti~~~~~g~~~~y~~g~ 222 (554)
+.|..+||++|.+....+++ .++.+..+|.+.++...+ ..|..+ +|++ |.+|+ +-||.
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~-------~~i~~~~~di~~~~~~~~~~~~~~g~~~-vP~i--~i~g~---~igg~ 63 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSS-------KGVTFTEIRVDGDPALRDEMMQRSGRRT-VPQI--FIGDV---HVGGC 63 (79)
T ss_pred EEEecCCChhHHHHHHHHHH-------cCCCcEEEEecCCHHHHHHHHHHhCCCC-cCEE--EECCE---EEcCh
Confidence 56889999999988877763 357778888887765443 347776 9997 44665 34564
No 308
>PRK10329 glutaredoxin-like protein; Provisional
Probab=95.44 E-value=0.02 Score=45.98 Aligned_cols=71 Identities=13% Similarity=0.220 Sum_probs=49.0
Q ss_pred EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHH---HhCCcCCCCcceeccCCeEEEEeCCcccHHH
Q psy16770 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLAR---RLGVGSQLPQIALLTDGRTSFFKEPSFSVQK 227 (554)
Q Consensus 151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~---~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~~ 227 (554)
++.|..+||++|.+..-.+++ .|+.+-.+|.+.+++... ..|... +|++++ ++.. ..|. +.+.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-------~gI~~~~idi~~~~~~~~~~~~~g~~~-vPvv~i--~~~~---~~Gf-~~~~ 68 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-------RGFDFEMINVDRVPEAAETLRAQGFRQ-LPVVIA--GDLS---WSGF-RPDM 68 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-------CCCceEEEECCCCHHHHHHHHHcCCCC-cCEEEE--CCEE---EecC-CHHH
Confidence 567889999999987766643 368999999998776443 446665 999865 4432 2354 5688
Q ss_pred HHHHHHHh
Q psy16770 228 MVEFFRLK 235 (554)
Q Consensus 228 i~~fl~~~ 235 (554)
|.+.+...
T Consensus 69 l~~~~~~~ 76 (81)
T PRK10329 69 INRLHPAP 76 (81)
T ss_pred HHHHHHhh
Confidence 87766543
No 309
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=95.43 E-value=0.13 Score=43.06 Aligned_cols=77 Identities=18% Similarity=0.174 Sum_probs=51.1
Q ss_pred CCceEEEEEecCCc-------hhHHHHHHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCCceee
Q psy16770 259 DNKVHALLFQRSLP-------VRLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASIT 331 (554)
Q Consensus 259 ~~~~~v~~f~~~~~-------~~~~~~~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~ 331 (554)
.++++++.|...-- +.+...+. .+ ..+.|+.++.+. ...+++++|+|.+ .||+++|+++ .. ..+
T Consensus 17 ~g~~vlV~F~a~WC~~C~~~~p~l~~la~--~~-~~~~~~~vd~~~-~~~~l~~~~~V~~-~PT~~lf~~g--~~--~~~ 87 (100)
T cd02999 17 REDYTAVLFYASWCPFSASFRPHFNALSS--MF-PQIRHLAIEESS-IKPSLLSRYGVVG-FPTILLFNST--PR--VRY 87 (100)
T ss_pred CCCEEEEEEECCCCHHHHhHhHHHHHHHH--Hh-ccCceEEEECCC-CCHHHHHhcCCee-cCEEEEEcCC--ce--eEe
Confidence 46777777744322 22222222 33 347777777541 3678999999997 9999999875 22 457
Q ss_pred cCCCChhHHHhHH
Q psy16770 332 MNSIPVPTLQDIT 344 (554)
Q Consensus 332 ~~~~~~~~l~~fi 344 (554)
.|..+...|.+||
T Consensus 88 ~G~~~~~~l~~f~ 100 (100)
T cd02999 88 NGTRTLDSLAAFY 100 (100)
T ss_pred cCCCCHHHHHhhC
Confidence 7888888888875
No 310
>PTZ00051 thioredoxin; Provisional
Probab=95.42 E-value=0.078 Score=43.72 Aligned_cols=73 Identities=18% Similarity=0.186 Sum_probs=49.4
Q ss_pred cCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHHh----hccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEE
Q psy16770 243 PLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINA----FKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLI 318 (554)
Q Consensus 243 ~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~a----~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvv 318 (554)
..+.+++.+.++ .++++++.|....-+..+..... .+....+.|+.++++ ....++++|++.+ .|++++
T Consensus 5 i~~~~~~~~~~~----~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~--~~~~~~~~~~v~~-~Pt~~~ 77 (98)
T PTZ00051 5 VTSQAEFESTLS----QNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVD--ELSEVAEKENITS-MPTFKV 77 (98)
T ss_pred ecCHHHHHHHHh----cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECc--chHHHHHHCCCce-eeEEEE
Confidence 335567777773 46777777765544443333221 122346889999886 6788999999997 999999
Q ss_pred EeCC
Q psy16770 319 FKED 322 (554)
Q Consensus 319 fk~~ 322 (554)
|+++
T Consensus 78 ~~~g 81 (98)
T PTZ00051 78 FKNG 81 (98)
T ss_pred EeCC
Confidence 9864
No 311
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=95.40 E-value=0.16 Score=45.50 Aligned_cols=93 Identities=14% Similarity=0.162 Sum_probs=56.6
Q ss_pred ccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----HhhccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeC
Q psy16770 247 TNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKE 321 (554)
Q Consensus 247 ~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~ 321 (554)
.++++.+ ..++++++.|...--+..+... .+..+.+.+.|..++.+......++++|+|.+ .|++++|++
T Consensus 11 ~~~~~a~----~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~-iPt~v~~~~ 85 (142)
T cd02950 11 TPPEVAL----SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDG-IPHFVFLDR 85 (142)
T ss_pred CCHHHHH----hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCC-CCEEEEECC
Confidence 3455544 3577788877544333222221 12245567888888876433457899999997 999999965
Q ss_pred CCCCCCceeecCCCChhHHHhHHhc
Q psy16770 322 DKDRPSASITMNSIPVPTLQDITDN 346 (554)
Q Consensus 322 ~~~~~~~~i~~~~~~~~~l~~fi~~ 346 (554)
+.... ....|..+.+.|.++|+.
T Consensus 86 ~G~~v--~~~~G~~~~~~l~~~l~~ 108 (142)
T cd02950 86 EGNEE--GQSIGLQPKQVLAQNLDA 108 (142)
T ss_pred CCCEE--EEEeCCCCHHHHHHHHHH
Confidence 33321 234566666766666654
No 312
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=95.37 E-value=0.03 Score=43.83 Aligned_cols=59 Identities=20% Similarity=0.385 Sum_probs=40.8
Q ss_pred EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHH----HhCCc-CCCCcceeccCCeEEEEeCCc
Q psy16770 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLAR----RLGVG-SQLPQIALLTDGRTSFFKEPS 222 (554)
Q Consensus 151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~----~~~v~-~~~Pti~~~~~g~~~~y~~g~ 222 (554)
++.|..+||++|.+....+++ .++.+..+|.+.+++..+ ..|.. + +|++. .+|+. .||.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~-------~~i~~~~i~i~~~~~~~~~~~~~~~~~~~-vP~v~--i~g~~---igg~ 65 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK-------KGVDYEEIDVDGDPALREEMINRSGGRRT-VPQIF--IGDVH---IGGC 65 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------CCCcEEEEECCCCHHHHHHHHHHhCCCCc-cCEEE--ECCEE---EeCh
Confidence 467889999999987766653 357888888888655433 34665 6 89764 46643 3564
No 313
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=95.35 E-value=0.022 Score=47.78 Aligned_cols=93 Identities=19% Similarity=0.302 Sum_probs=61.1
Q ss_pred cccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcH----HHHHHhCCcCCCCccee
Q psy16770 134 HWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQ----GLARRLGVGSQLPQIAL 209 (554)
Q Consensus 134 ~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~----~l~~~~~v~~~~Pti~~ 209 (554)
.+++++.+ ..+.++|++|+=.+..|+-+......|++......+. +.++.+|.-+++ .+++++||...-|.+++
T Consensus 7 ~eql~~i~-~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~-~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~il 84 (105)
T PF11009_consen 7 EEQLEEIL-EESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDE-IPVYYLDVIEYRPVSNAIAEDFGVKHESPQVIL 84 (105)
T ss_dssp HHHHHHHH-HH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-----EEEEEGGGGHHHHHHHHHHHT----SSEEEE
T ss_pred HHHHHHHH-HhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCcc-ceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEE
Confidence 34555544 3456889999889999999999999999998887753 899999998865 56889999877899999
Q ss_pred ccCCeEEEEeC-CcccHHHH
Q psy16770 210 LTDGRTSFFKE-PSFSVQKM 228 (554)
Q Consensus 210 ~~~g~~~~y~~-g~~~~~~i 228 (554)
+++|+++.... ...+.+.|
T Consensus 85 i~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 85 IKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp EETTEEEEEEEGGG-SHHHH
T ss_pred EECCEEEEECccccCCHHhc
Confidence 99999864432 22344444
No 314
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=95.34 E-value=0.031 Score=43.66 Aligned_cols=59 Identities=17% Similarity=0.334 Sum_probs=42.1
Q ss_pred EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHH----HHHHhCCcCCCCcceeccCCeEEEEeCCc
Q psy16770 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQG----LARRLGVGSQLPQIALLTDGRTSFFKEPS 222 (554)
Q Consensus 151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~----l~~~~~v~~~~Pti~~~~~g~~~~y~~g~ 222 (554)
++.|..+||++|++..-.+++ .|+.+..+|..+++. +.+..+... +|++. .+|+ +.||.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-------~gi~~~~~di~~~~~~~~el~~~~g~~~-vP~v~--i~~~---~iGg~ 65 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-------KGLPYVEINIDIFPERKAELEERTGSSV-VPQIF--FNEK---LVGGL 65 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-------CCCceEEEECCCCHHHHHHHHHHhCCCC-cCEEE--ECCE---EEeCH
Confidence 567899999999887766553 468888999988665 445556675 89874 4564 55664
No 315
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=95.32 E-value=0.032 Score=45.39 Aligned_cols=59 Identities=27% Similarity=0.430 Sum_probs=44.0
Q ss_pred EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC--------------------------------cHHHHHHh
Q psy16770 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN--------------------------------EQGLARRL 198 (554)
Q Consensus 151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~--------------------------------~~~l~~~~ 198 (554)
++.|+.+.|++|..+.+.++++.....+ ++.+..+...- +..++++.
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 79 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG-GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARAL 79 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC-cEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHc
Confidence 4679999999999999999998755544 46666554321 23567788
Q ss_pred CCcCCCCcceecc
Q psy16770 199 GVGSQLPQIALLT 211 (554)
Q Consensus 199 ~v~~~~Pti~~~~ 211 (554)
|+.| +||+++..
T Consensus 80 g~~g-~Pt~v~~~ 91 (98)
T cd02972 80 GVTG-TPTFVVNG 91 (98)
T ss_pred CCCC-CCEEEECC
Confidence 9998 99998854
No 316
>KOG0431|consensus
Probab=95.18 E-value=0.034 Score=59.35 Aligned_cols=49 Identities=27% Similarity=0.488 Sum_probs=37.2
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChh--------HHHHHHHHHHHHHH
Q psy16770 22 YETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPT--------AQEKFLQLTEAYNI 70 (554)
Q Consensus 22 y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~--------~~~~~~~i~~Ay~~ 70 (554)
|+=.++.--.+.++|||+|||.++..||||.+..+ +++-|..+++|+.-
T Consensus 391 WqpVsltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~ 447 (453)
T KOG0431|consen 391 WQPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNK 447 (453)
T ss_pred cccCchhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 44557777889999999999999999999986543 34456666666653
No 317
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=95.15 E-value=0.036 Score=44.46 Aligned_cols=78 Identities=14% Similarity=0.276 Sum_probs=55.5
Q ss_pred EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCC--eEEEEeCCcccHHHH
Q psy16770 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDG--RTSFFKEPSFSVQKM 228 (554)
Q Consensus 151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g--~~~~y~~g~~~~~~i 228 (554)
++.|..+.|+-|..+....+++... .++.+-.||.+.++.+..+|+.. +|.+.+-..+ .......++.+.+.|
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~---~~~~l~~vDI~~d~~l~~~Y~~~--IPVl~~~~~~~~~~~~~~~~~~d~~~L 76 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAE---FPFELEEVDIDEDPELFEKYGYR--IPVLHIDGIRQFKEQEELKWRFDEEQL 76 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTT---STCEEEEEETTTTHHHHHHSCTS--TSEEEETT-GGGCTSEEEESSB-HHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhh---cCceEEEEECCCCHHHHHHhcCC--CCEEEEcCcccccccceeCCCCCHHHH
Confidence 6789999999999888777765443 25899999999999999999974 8997764311 101222244688999
Q ss_pred HHHHH
Q psy16770 229 VEFFR 233 (554)
Q Consensus 229 ~~fl~ 233 (554)
.+|++
T Consensus 77 ~~~L~ 81 (81)
T PF05768_consen 77 RAWLE 81 (81)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 98874
No 318
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=94.92 E-value=0.046 Score=45.71 Aligned_cols=59 Identities=20% Similarity=0.388 Sum_probs=38.7
Q ss_pred EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHH-------HHHHhCCcCCCCcceeccCCeEEEEeCCc
Q psy16770 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQG-------LARRLGVGSQLPQIALLTDGRTSFFKEPS 222 (554)
Q Consensus 151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~-------l~~~~~v~~~~Pti~~~~~g~~~~y~~g~ 222 (554)
++.|..+||++|.+....+.+ .++.+..+|.+.++. +.+..|... +|.+ |.+|+ +.||.
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~-------~~i~~~~vdid~~~~~~~~~~~l~~~tg~~t-vP~V--fi~g~---~iGG~ 75 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLT-------LGVNPAVHEIDKEPAGKDIENALSRLGCSPA-VPAV--FVGGK---LVGGL 75 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHH-------cCCCCEEEEcCCCccHHHHHHHHHHhcCCCC-cCeE--EECCE---EEcCH
Confidence 566999999999987765543 256666777766532 333346675 8986 55674 44675
No 319
>PHA03050 glutaredoxin; Provisional
Probab=94.82 E-value=0.039 Score=46.92 Aligned_cols=62 Identities=16% Similarity=0.206 Sum_probs=39.1
Q ss_pred EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC---c----HHHHHHhCCcCCCCcceeccCCeEEEEeCCc
Q psy16770 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN---E----QGLARRLGVGSQLPQIALLTDGRTSFFKEPS 222 (554)
Q Consensus 151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~---~----~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~ 222 (554)
++.|..+|||+|++....+++..-+. -.+..+|.++ . ..+-+.-|.+. +|++ |.+|+. .||.
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~----~~~~~i~i~~~~~~~~~~~~l~~~tG~~t-VP~I--fI~g~~---iGG~ 83 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKR----GAYEIVDIKEFKPENELRDYFEQITGGRT-VPRI--FFGKTS---IGGY 83 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCc----CCcEEEECCCCCCCHHHHHHHHHHcCCCC-cCEE--EECCEE---EeCh
Confidence 66799999999998877666432111 1455566654 2 23555567776 9998 446653 4665
No 320
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=94.79 E-value=0.27 Score=45.73 Aligned_cols=100 Identities=11% Similarity=0.028 Sum_probs=61.1
Q ss_pred cccCCc-ccHHHHHhhhhcCCceEEEEEecCCchhHHHH-----HHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCc
Q psy16770 241 IVPLSA-TNVDAFLDNWREDNKVHALLFQRSLPVRLRYL-----INAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKD 314 (554)
Q Consensus 241 v~~~t~-~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~-----~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~P 314 (554)
+..++. +++.+.+... +.+.++|+.|.....++.... .++..+ ..++|..++++. . .++.+|+|.. .|
T Consensus 64 v~ei~~~~~f~~~v~~~-~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~-~~vkF~kVd~d~--~-~l~~~f~v~~-vP 137 (175)
T cd02987 64 VYELDSGEQFLDAIDKE-GKDTTVVVHIYEPGIPGCAALNSSLLCLAAEY-PAVKFCKIRASA--T-GASDEFDTDA-LP 137 (175)
T ss_pred EEEcCCHHHHHHHHHhc-CCCcEEEEEEECCCCchHHHHHHHHHHHHHHC-CCeEEEEEeccc--h-hhHHhCCCCC-CC
Confidence 445555 7777666431 123477777755443333222 122243 579999998862 3 7999999997 99
Q ss_pred eEEEEeCCCCCCCce-----eecCCCChhHHHhHHhcC
Q psy16770 315 SLLIFKEDKDRPSAS-----ITMNSIPVPTLQDITDNN 347 (554)
Q Consensus 315 tlvvfk~~~~~~~~~-----i~~~~~~~~~l~~fi~~~ 347 (554)
|+++|+++... ... .-..+++...|..++..+
T Consensus 138 Tlllyk~G~~v-~~~vG~~~~~g~~f~~~~le~~L~~~ 174 (175)
T cd02987 138 ALLVYKGGELI-GNFVRVTEDLGEDFDAEDLESFLVEY 174 (175)
T ss_pred EEEEEECCEEE-EEEechHHhcCCCCCHHHHHHHHHhc
Confidence 99999984321 111 112367778888877643
No 321
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=94.74 E-value=0.17 Score=50.02 Aligned_cols=84 Identities=19% Similarity=0.232 Sum_probs=54.3
Q ss_pred CCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEE--------------------------------------
Q psy16770 145 SYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV-------------------------------------- 186 (554)
Q Consensus 145 ~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~V-------------------------------------- 186 (554)
...+..++.|.-+.|++|+++.+...+..+. + ++.+-.+
T Consensus 115 ~~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g-~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~ 191 (251)
T PRK11657 115 ADAPRIVYVFADPNCPYCKQFWQQARPWVDS--G-KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGL 191 (251)
T ss_pred CCCCeEEEEEECCCChhHHHHHHHHHHHhhc--C-ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCC
Confidence 3456788899999999999998876654322 1 1221111
Q ss_pred --------Eec----CcHHHHHHhCCcCCCCcceecc-CCeEEEEeCCcccHHHHHHHHH
Q psy16770 187 --------HVH----NEQGLARRLGVGSQLPQIALLT-DGRTSFFKEPSFSVQKMVEFFR 233 (554)
Q Consensus 187 --------d~~----~~~~l~~~~~v~~~~Pti~~~~-~g~~~~y~~g~~~~~~i~~fl~ 233 (554)
+|. ++..+++++||+| .|++++-. +|.+.... |..+.+.|.+.+.
T Consensus 192 ~~~~~~~~~~~~~i~~n~~l~~~lGv~G-TPaiv~~d~~G~~~~v~-G~~~~~~L~~~l~ 249 (251)
T PRK11657 192 KPPASIPAAVRKQLADNQKLMDDLGANA-TPAIYYMDKDGTLQQVV-GLPDPAQLAEIMG 249 (251)
T ss_pred CccccCCHHHHHHHHHHHHHHHHcCCCC-CCEEEEECCCCCEEEec-CCCCHHHHHHHhC
Confidence 011 1345788999998 99999874 46544444 5557788877653
No 322
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=94.72 E-value=0.17 Score=41.68 Aligned_cols=98 Identities=13% Similarity=0.149 Sum_probs=62.8
Q ss_pred cCCc-ccHHHHHhhhhcCCceEEEEEecCCc--hhHHHHHHhh-ccCCceEEEEEEccCCCChhHHhHhCCC----CCCc
Q psy16770 243 PLSA-TNVDAFLDNWREDNKVHALLFQRSLP--VRLRYLINAF-KHRTTIVFGVIVYDQEDSSSVFQRFKVP----GDKD 314 (554)
Q Consensus 243 ~~t~-~~~~~fl~~~~~~~~~~v~~f~~~~~--~~~~~~~~a~-~~~~~v~Fg~v~~~~~~~~~l~~k~~i~----~~~P 314 (554)
.+++ .++.+.+. ..+.+.+++..+..+ ..+..+..++ ..++.-..++++|+..+...+|++++++ +..-
T Consensus 5 ~i~d~KdfKKLLR---Tr~NVLvLy~ks~k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~ 81 (112)
T cd03067 5 DISDHKDFKKLLR---TRNNVLVLYSKSAKSAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPV 81 (112)
T ss_pred cccchHHHHHHHh---hcCcEEEEEecchhhHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcc
Confidence 3433 66777774 345566665544332 3455555555 6788899999999977788999999998 4222
Q ss_pred eEEEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770 315 SLLIFKEDKDRPSASITMNSIPVPTLQDITDN 346 (554)
Q Consensus 315 tlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~ 346 (554)
+|.-|+++.- +.-|...++...|..|++.
T Consensus 82 ~LkHYKdG~f---HkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 82 ELKHYKDGDF---HTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred hhhcccCCCc---cccccchhhHHHHHHHhhC
Confidence 4445555332 1235666677778887763
No 323
>KOG0907|consensus
Probab=94.68 E-value=0.23 Score=42.04 Aligned_cols=62 Identities=18% Similarity=0.211 Sum_probs=45.5
Q ss_pred CCceEEEEEecCCch-----hHHHHHHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCC
Q psy16770 259 DNKVHALLFQRSLPV-----RLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKD 324 (554)
Q Consensus 259 ~~~~~v~~f~~~~~~-----~~~~~~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~ 324 (554)
.++.+|+.|...--+ ...+-.++.++.+ +.|..+|++. ..+++++++|.. .||+++||++..
T Consensus 20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde--~~~~~~~~~V~~-~PTf~f~k~g~~ 86 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDE--LEEVAKEFNVKA-MPTFVFYKGGEE 86 (106)
T ss_pred CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEeccc--CHhHHHhcCceE-eeEEEEEECCEE
Confidence 457777777433222 2344445556666 9999999985 899999999997 999999998544
No 324
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=94.63 E-value=0.38 Score=42.92 Aligned_cols=75 Identities=11% Similarity=0.105 Sum_probs=51.1
Q ss_pred CcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----HhhccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEE
Q psy16770 245 SATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIF 319 (554)
Q Consensus 245 t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvf 319 (554)
|.+++++.+.. +.++++++-|...-.++.+... .+.++.+.+.|..+|++ .+++++++|+|....|++.+|
T Consensus 10 s~~e~d~~I~~--~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVD--e~~dla~~y~I~~~~t~~~ff 85 (142)
T PLN00410 10 SGWAVDQAILA--EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDIT--EVPDFNTMYELYDPCTVMFFF 85 (142)
T ss_pred CHHHHHHHHHh--cCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECC--CCHHHHHHcCccCCCcEEEEE
Confidence 55778887754 3577888877655444433322 22245677889999998 789999999999523444488
Q ss_pred eCCC
Q psy16770 320 KEDK 323 (554)
Q Consensus 320 k~~~ 323 (554)
|++.
T Consensus 86 k~g~ 89 (142)
T PLN00410 86 RNKH 89 (142)
T ss_pred ECCe
Confidence 8753
No 325
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=94.61 E-value=0.24 Score=42.34 Aligned_cols=73 Identities=18% Similarity=0.142 Sum_probs=52.9
Q ss_pred ccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----HhhccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeC
Q psy16770 247 TNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKE 321 (554)
Q Consensus 247 ~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~ 321 (554)
+++++.+.. +.++++|+-|...-.++.+... .+-++.+.+.|..+|.+ ..+++++.|+|.. -||.++|++
T Consensus 3 ~~~d~~i~~--~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVD--ev~dva~~y~I~a-mPtfvffkn 77 (114)
T cd02986 3 KEVDQAIKS--TAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVD--KVPVYTQYFDISY-IPSTIFFFN 77 (114)
T ss_pred HHHHHHHHh--cCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEecc--ccHHHHHhcCcee-CcEEEEEEC
Confidence 456666654 3588899988776665544432 22245445999999998 7899999999986 899999997
Q ss_pred CCC
Q psy16770 322 DKD 324 (554)
Q Consensus 322 ~~~ 324 (554)
+..
T Consensus 78 gkh 80 (114)
T cd02986 78 GQH 80 (114)
T ss_pred CcE
Confidence 543
No 326
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=94.40 E-value=0.44 Score=40.73 Aligned_cols=56 Identities=4% Similarity=0.108 Sum_probs=42.0
Q ss_pred CceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCCCChhHHHhHHh
Q psy16770 286 TTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITD 345 (554)
Q Consensus 286 ~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~ 345 (554)
+.+.|..++.+ ..++++++|+|.+ .||+++|+++...- ...+.|-.+...+.+||.
T Consensus 52 ~~i~~~~vd~d--~~~~l~~~~~v~~-vPt~~i~~~g~~~~-~~~~~G~~~~~el~~~i~ 107 (113)
T cd02975 52 DKLKLEIYDFD--EDKEKAEKYGVER-VPTTIFLQDGGKDG-GIRYYGLPAGYEFASLIE 107 (113)
T ss_pred CceEEEEEeCC--cCHHHHHHcCCCc-CCEEEEEeCCeecc-eEEEEecCchHHHHHHHH
Confidence 67899999887 6889999999997 99999998753321 124556556667777765
No 327
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.39 E-value=0.029 Score=52.14 Aligned_cols=66 Identities=27% Similarity=0.492 Sum_probs=52.3
Q ss_pred CcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCChh------HHHHHHHHHHHHHHcCChHHHHhhhccCC
Q psy16770 20 DPYETLGVPRTA--SLQEIRKNYKRLVVEWHPDKNNDPT------AQEKFLQLTEAYNILSDAERRKQYDLFGT 85 (554)
Q Consensus 20 d~y~~Lgv~~~a--~~~~ik~ay~~l~~~~hPd~~~~~~------~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~ 85 (554)
|++.++|..+.+ ..+.++..|+.+.+.+|||+..... +.+++..++.||.+|.+|-.|..|=..-.
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~ 75 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALA 75 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence 456666776655 4557999999999999999986422 34578999999999999999999986444
No 328
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=94.07 E-value=0.11 Score=42.54 Aligned_cols=62 Identities=19% Similarity=0.346 Sum_probs=40.0
Q ss_pred CcEEEEEEc----ccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHH----HHHhCCcCCCCcceeccCCeEEEEe
Q psy16770 148 TPHLILFYS----DWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGL----ARRLGVGSQLPQIALLTDGRTSFFK 219 (554)
Q Consensus 148 ~~~lV~Fya----~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l----~~~~~v~~~~Pti~~~~~g~~~~y~ 219 (554)
.+++|.-.+ |||++|++....+. ..++.+..+|...++++ .+..|... +|.+ |.+|+ +.
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~-------~~~i~y~~idv~~~~~~~~~l~~~~g~~t-vP~v--fi~g~---~i 74 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKVVQILN-------QLGVDFGTFDILEDEEVRQGLKEYSNWPT-FPQL--YVNGE---LV 74 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHHH-------HcCCCeEEEEcCCCHHHHHHHHHHhCCCC-CCEE--EECCE---EE
Confidence 355553332 79999987665544 33678888888776654 34457675 9987 45675 44
Q ss_pred CCc
Q psy16770 220 EPS 222 (554)
Q Consensus 220 ~g~ 222 (554)
||.
T Consensus 75 GG~ 77 (90)
T cd03028 75 GGC 77 (90)
T ss_pred eCH
Confidence 664
No 329
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=93.75 E-value=0.095 Score=41.92 Aligned_cols=65 Identities=17% Similarity=0.414 Sum_probs=41.9
Q ss_pred EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcH-----HHHHHh-CCcCCCCcceeccCCeEEEEeCCccc
Q psy16770 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQ-----GLARRL-GVGSQLPQIALLTDGRTSFFKEPSFS 224 (554)
Q Consensus 151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~-----~l~~~~-~v~~~~Pti~~~~~g~~~~y~~g~~~ 224 (554)
++.|..++|++|++....+. ..|+.+..+|.+.+. +..++- |.+. +|.|.+ +|+ ..||..+
T Consensus 3 v~iyt~~~CPyC~~ak~~L~-------~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~t-vP~I~i--~~~---~igg~~d 69 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD-------RKGVDYEEIDVDDDEPEEAREMVKRGKGQRT-VPQIFI--GGK---HVGGCDD 69 (80)
T ss_pred EEEEECCCCchHHHHHHHHH-------HcCCCcEEEEecCCcHHHHHHHHHHhCCCCC-cCEEEE--CCE---EEeCccc
Confidence 56688899999987665444 446888888887765 233444 6776 998766 454 3344334
Q ss_pred HHHH
Q psy16770 225 VQKM 228 (554)
Q Consensus 225 ~~~i 228 (554)
.+.+
T Consensus 70 ~~~~ 73 (80)
T COG0695 70 LDAL 73 (80)
T ss_pred HHHH
Confidence 3443
No 330
>PTZ00062 glutaredoxin; Provisional
Probab=93.71 E-value=1.8 Score=41.22 Aligned_cols=164 Identities=9% Similarity=0.084 Sum_probs=87.0
Q ss_pred CcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHHhh----ccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEe
Q psy16770 245 SATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAF----KHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFK 320 (554)
Q Consensus 245 t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~a~----~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk 320 (554)
+.+++.+.+++ +....|++|...-.++.+.....+ +-.+.+.|..|+. + |+|.. .|++++|+
T Consensus 5 ~~ee~~~~i~~---~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~------d----~~V~~-vPtfv~~~ 70 (204)
T PTZ00062 5 KKEEKDKLIES---NTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNL------A----DANNE-YGVFEFYQ 70 (204)
T ss_pred CHHHHHHHHhc---CCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEcc------c----cCccc-ceEEEEEE
Confidence 45667777642 236677778655444433332222 2236799999953 2 99997 99999999
Q ss_pred CCCCCCCceeecCCCChhHHHhHHhcCCCcccccccchhhhhhcCCCCceEEEEEcCCC--CcchhHHHHHHHHHhhccC
Q psy16770 321 EDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRISSQSMLDAVCPVKKLCVVLFSEDS--PEHDASRHTLRRFAQESRF 398 (554)
Q Consensus 321 ~~~~~~~~~i~~~~~~~~~l~~fi~~~~~~~v~~lt~~~~~~~~c~~~~lcvvl~~~~~--~~~~~~~~~l~~~a~~~~~ 398 (554)
++.. ...+. .-....|..++..+.-..-.+-. ....+.+.. .+. |++|..+. ..........+++-++ .
T Consensus 71 ~g~~--i~r~~--G~~~~~~~~~~~~~~~~~~~~~~-~~~v~~li~-~~~-Vvvf~Kg~~~~p~C~~C~~~k~~L~~--~ 141 (204)
T PTZ00062 71 NSQL--INSLE--GCNTSTLVSFIRGWAQKGSSEDT-VEKIERLIR-NHK-ILLFMKGSKTFPFCRFSNAVVNMLNS--S 141 (204)
T ss_pred CCEE--Eeeee--CCCHHHHHHHHHHHcCCCCHHHH-HHHHHHHHh-cCC-EEEEEccCCCCCCChhHHHHHHHHHH--c
Confidence 7543 12222 22445566666554332211111 122333332 233 34454432 1334455555555555 2
Q ss_pred CCCceEEEEEecccchHHHHhhCCCCCCccccceEEEEEE
Q psy16770 399 VHNNIAFMYVFIEKQPEFVNALTSPEDSSEISLHIAAMWR 438 (554)
Q Consensus 399 ~~~~v~F~~vd~~~q~~~~~~~~~~~~~~~~~~~~~~v~~ 438 (554)
.+.|..+|..+..+..+.+...+ + .+.+|.|++
T Consensus 142 ---~i~y~~~DI~~d~~~~~~l~~~s---g-~~TvPqVfI 174 (204)
T PTZ00062 142 ---GVKYETYNIFEDPDLREELKVYS---N-WPTYPQLYV 174 (204)
T ss_pred ---CCCEEEEEcCCCHHHHHHHHHHh---C-CCCCCeEEE
Confidence 36788888877666655552111 1 257787766
No 331
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=93.55 E-value=0.091 Score=47.00 Aligned_cols=41 Identities=20% Similarity=0.322 Sum_probs=32.0
Q ss_pred CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEe
Q psy16770 146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHV 188 (554)
Q Consensus 146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~ 188 (554)
..++.+++|+.++|++|+++.|.++++...+. ++.+...+.
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~--~~~~~~~~~ 44 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP--DVRVVFKEF 44 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC--CceEEEEeC
Confidence 46688999999999999999999998877664 355554443
No 332
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=93.47 E-value=1 Score=49.42 Aligned_cols=169 Identities=7% Similarity=0.015 Sum_probs=99.8
Q ss_pred CcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeE--EEEeCCcccH
Q psy16770 148 TPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRT--SFFKEPSFSV 225 (554)
Q Consensus 148 ~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~--~~y~~g~~~~ 225 (554)
+++-+.++.+.|..|..+....+++++.-. ++.+...+.. .. .|++.+..+|+. +.|+|-+ .=
T Consensus 19 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~--~i~~~~~~~~-----------~~-~p~~~~~~~~~~~~i~f~g~P-~g 83 (517)
T PRK15317 19 RPIELVASLDDSEKSAELKELLEEIASLSD--KITVEEDSLD-----------VR-KPSFSITRPGEDTGVRFAGIP-MG 83 (517)
T ss_pred CCEEEEEEeCCCchHHHHHHHHHHHHHhCC--ceEEEEccCC-----------CC-CCEEEEEcCCccceEEEEecC-cc
Confidence 345455555689999998888888877653 3555332211 44 899999876643 6777643 44
Q ss_pred HHHHHHHHHh---CCCCccccCCcccHHHHHhhhhcCCceEEEEEecCCchhH---HHHHHhh-ccCCceEEEEEEccCC
Q psy16770 226 QKMVEFFRLK---LPYKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRL---RYLINAF-KHRTTIVFGVIVYDQE 298 (554)
Q Consensus 226 ~~i~~fl~~~---~~~~~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~---~~~~~a~-~~~~~v~Fg~v~~~~~ 298 (554)
.++..|+... .++. ..++++.. +.+... +.+..+..|....-+.. ...+..+ ...+++.+-.++..
T Consensus 84 ~Ef~s~i~~i~~~~~~~--~~l~~~~~-~~i~~~--~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~-- 156 (517)
T PRK15317 84 HEFTSLVLALLQVGGHP--PKLDQEVI-EQIKAL--DGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGA-- 156 (517)
T ss_pred HHHHHHHHHHHHhcCCC--CCCCHHHH-HHHHhc--CCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEch--
Confidence 6666666543 3433 33444433 344432 34444556644333322 2222222 34578999888776
Q ss_pred CChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770 299 DSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDN 346 (554)
Q Consensus 299 ~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~ 346 (554)
..++++++|++.. .|++++ ++ + .+..+..+...+.+.+..
T Consensus 157 ~~~~~~~~~~v~~-VP~~~i-~~--~----~~~~g~~~~~~~~~~~~~ 196 (517)
T PRK15317 157 LFQDEVEARNIMA-VPTVFL-NG--E----EFGQGRMTLEEILAKLDT 196 (517)
T ss_pred hCHhHHHhcCCcc-cCEEEE-CC--c----EEEecCCCHHHHHHHHhc
Confidence 7899999999996 999976 21 1 345566666656555543
No 333
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=93.34 E-value=0.14 Score=44.66 Aligned_cols=56 Identities=23% Similarity=0.241 Sum_probs=41.7
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHH
Q psy16770 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRK 78 (554)
Q Consensus 20 d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~ 78 (554)
...+||||++..+.++|.+.|.+|-...+|++. +..---.+|..|.+.|..+.+..
T Consensus 59 EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kG---GSfYLQSKV~rAKErl~~El~~~ 114 (127)
T PF03656_consen 59 EARQILNVKEELSREEIQKRYKHLFKANDPSKG---GSFYLQSKVFRAKERLEQELKEE 114 (127)
T ss_dssp HHHHHHT--G--SHHHHHHHHHHHHHHT-CCCT---S-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHhccCCCcC---CCHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999987 44566677899999988665443
No 334
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=93.20 E-value=0.35 Score=42.05 Aligned_cols=75 Identities=13% Similarity=0.304 Sum_probs=59.8
Q ss_pred cccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCc-ceeccCCeEE
Q psy16770 138 EKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQ-IALLTDGRTS 216 (554)
Q Consensus 138 ~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pt-i~~~~~g~~~ 216 (554)
+.+|+. ..++.++|-|-.+|.+.|.++-..+.++++.++.. ..+..||.++-+++.+-|.+. -|+ +.+|-+++.+
T Consensus 12 DqAI~~-e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~-a~IY~vDi~~Vpdfn~~yel~--dP~tvmFF~rnkhm 87 (133)
T PF02966_consen 12 DQAILS-EEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF-AVIYLVDIDEVPDFNQMYELY--DPCTVMFFFRNKHM 87 (133)
T ss_dssp HHHHHH--SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT-EEEEEEETTTTHCCHHHTTS---SSEEEEEEETTEEE
T ss_pred HHHHhc-cCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc-eEEEEEEcccchhhhcccccC--CCeEEEEEecCeEE
Confidence 344432 46789999999999999999999999999999986 899999999999999999997 475 5555455553
No 335
>PRK10638 glutaredoxin 3; Provisional
Probab=93.05 E-value=0.18 Score=40.46 Aligned_cols=65 Identities=17% Similarity=0.384 Sum_probs=42.7
Q ss_pred EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHH----HHHhCCcCCCCcceeccCCeEEEEeCCcccHH
Q psy16770 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGL----ARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQ 226 (554)
Q Consensus 151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l----~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~ 226 (554)
++.|..+||++|.+..-.+++ .++.+..+|++.+... .+..|... +|++. .+|+ +.||. +
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~-------~gi~y~~~dv~~~~~~~~~l~~~~g~~~-vP~i~--~~g~---~igG~---~ 67 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNS-------KGVSFQEIPIDGDAAKREEMIKRSGRTT-VPQIF--IDAQ---HIGGC---D 67 (83)
T ss_pred EEEEECCCChhHHHHHHHHHH-------cCCCcEEEECCCCHHHHHHHHHHhCCCC-cCEEE--ECCE---EEeCH---H
Confidence 556778999999987765553 3577888888776543 44456775 99874 3664 44564 4
Q ss_pred HHHHH
Q psy16770 227 KMVEF 231 (554)
Q Consensus 227 ~i~~f 231 (554)
++..+
T Consensus 68 ~~~~~ 72 (83)
T PRK10638 68 DLYAL 72 (83)
T ss_pred HHHHH
Confidence 44443
No 336
>PRK10824 glutaredoxin-4; Provisional
Probab=92.72 E-value=0.21 Score=42.87 Aligned_cols=55 Identities=18% Similarity=0.208 Sum_probs=33.3
Q ss_pred ccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhC-CcCCCCcc-eeccCCeEEEEeCCc
Q psy16770 157 DWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLG-VGSQLPQI-ALLTDGRTSFFKEPS 222 (554)
Q Consensus 157 ~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~-v~~~~Pti-~~~~~g~~~~y~~g~ 222 (554)
|||++|++....+.+. ++.+..+|...+.++...+. .++ .||+ .+|.+|+. .||.
T Consensus 28 p~Cpyc~~ak~lL~~~-------~i~~~~idi~~d~~~~~~l~~~sg-~~TVPQIFI~G~~---IGG~ 84 (115)
T PRK10824 28 PSCGFSAQAVQALSAC-------GERFAYVDILQNPDIRAELPKYAN-WPTFPQLWVDGEL---VGGC 84 (115)
T ss_pred CCCchHHHHHHHHHHc-------CCCceEEEecCCHHHHHHHHHHhC-CCCCCeEEECCEE---EcCh
Confidence 6999998876655542 46666778777665544332 122 4443 45667854 4775
No 337
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=92.70 E-value=1.1 Score=38.90 Aligned_cols=85 Identities=14% Similarity=0.124 Sum_probs=53.1
Q ss_pred cCC-ceEEEEEecCCchhHHHHH--------HhhccCCceEEEEEEccCC-----------CChhHHhHhCCCCCCceEE
Q psy16770 258 EDN-KVHALLFQRSLPVRLRYLI--------NAFKHRTTIVFGVIVYDQE-----------DSSSVFQRFKVPGDKDSLL 317 (554)
Q Consensus 258 ~~~-~~~v~~f~~~~~~~~~~~~--------~a~~~~~~v~Fg~v~~~~~-----------~~~~l~~k~~i~~~~Ptlv 317 (554)
..+ +++++.|....-+..+... ....+.+.+.+..++.+.. ...+++.+|+|.+ .||++
T Consensus 11 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~-~Pt~~ 89 (125)
T cd02951 11 ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRF-TPTVI 89 (125)
T ss_pred HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCcc-ccEEE
Confidence 356 7888888655444333322 1112345677777776532 1368899999997 99999
Q ss_pred EEeCC-CCCCCceeecCCCChhHHHhHHh
Q psy16770 318 IFKED-KDRPSASITMNSIPVPTLQDITD 345 (554)
Q Consensus 318 vfk~~-~~~~~~~i~~~~~~~~~l~~fi~ 345 (554)
+|.++ .+ .. ....|.++.+.+..+|+
T Consensus 90 ~~~~~gg~-~~-~~~~G~~~~~~~~~~l~ 116 (125)
T cd02951 90 FLDPEGGK-EI-ARLPGYLPPDEFLAYLE 116 (125)
T ss_pred EEcCCCCc-ee-EEecCCCCHHHHHHHHH
Confidence 99875 33 22 34566667676766665
No 338
>KOG1731|consensus
Probab=92.64 E-value=0.088 Score=56.33 Aligned_cols=67 Identities=19% Similarity=0.414 Sum_probs=56.8
Q ss_pred ccHHHHHhhhhcCCceEEEEEecCCchhHHHHHHhh-ccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCC
Q psy16770 247 TNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAF-KHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKED 322 (554)
Q Consensus 247 ~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~a~-~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~ 322 (554)
.-+.+|++.||++++..+..|.+ ++... .++.-+.++.|||....+..+|+.|+|+. +|+|..|+++
T Consensus 59 ~~lVEFy~swCGhCr~FAPtfk~--------~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~-~Ptlryf~~~ 126 (606)
T KOG1731|consen 59 AKLVEFYNSWCGHCRAFAPTFKK--------FAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSG-YPTLRYFPPD 126 (606)
T ss_pred hHHHHHHHhhhhhhhhcchHHHH--------HHHHHhcccceeEEEEeeccchhhhhhHhhcCCCC-CceeeecCCc
Confidence 45678999999999887666643 55555 67888999999999989999999999997 9999999875
No 339
>KOG3170|consensus
Probab=91.93 E-value=0.17 Score=46.84 Aligned_cols=81 Identities=11% Similarity=0.156 Sum_probs=63.6
Q ss_pred ccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcce
Q psy16770 129 KLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIA 208 (554)
Q Consensus 129 ~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~ 208 (554)
|..++..+|.+.|...+.+-.++|..|...-+.|.-+...++.+|..+.. ++|+++=++.. ..-|-=.. .|||+
T Consensus 93 V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~--iKFVki~at~c---IpNYPe~n-lPTl~ 166 (240)
T KOG3170|consen 93 VFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ--IKFVKIPATTC---IPNYPESN-LPTLL 166 (240)
T ss_pred eeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc--ceEEecccccc---cCCCcccC-CCeEE
Confidence 77788888888887777777888999999999999999999999999874 78887765442 01133344 89999
Q ss_pred eccCCeE
Q psy16770 209 LLTDGRT 215 (554)
Q Consensus 209 ~~~~g~~ 215 (554)
+|..|..
T Consensus 167 VY~~G~l 173 (240)
T KOG3170|consen 167 VYHHGAL 173 (240)
T ss_pred EeecchH
Confidence 9988853
No 340
>KOG2640|consensus
Probab=91.70 E-value=0.087 Score=52.25 Aligned_cols=92 Identities=18% Similarity=0.286 Sum_probs=69.8
Q ss_pred CCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCccc
Q psy16770 145 SYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFS 224 (554)
Q Consensus 145 ~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~ 224 (554)
++..++-+.||+.||+..+...|.+.-....+.. .-.++.=+-...+.+.+++|+.+ .|++.+...--+..|.|. +.
T Consensus 74 n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~-i~h~~vee~~~lpsv~s~~~~~~-~ps~~~~n~t~~~~~~~~-r~ 150 (319)
T KOG2640|consen 74 NKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS-IQHFAVEESQALPSVFSSYGIHS-EPSNLMLNQTCPASYRGE-RD 150 (319)
T ss_pred ccCCcccccchhcccCcccccCcccchhhhhccc-cccccHHHHhhcccchhcccccc-CCcceeeccccchhhccc-cc
Confidence 3455777889999999999999999877666652 12333112233567889999997 999999877777788865 58
Q ss_pred HHHHHHHHHHhCCCC
Q psy16770 225 VQKMVEFFRLKLPYK 239 (554)
Q Consensus 225 ~~~i~~fl~~~~~~~ 239 (554)
..+|++|..+.++-.
T Consensus 151 l~sLv~fy~~i~~~~ 165 (319)
T KOG2640|consen 151 LASLVNFYTEITPMS 165 (319)
T ss_pred HHHHHHHHHhhccch
Confidence 899999999998754
No 341
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=91.57 E-value=0.34 Score=40.29 Aligned_cols=53 Identities=23% Similarity=0.310 Sum_probs=35.6
Q ss_pred ccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHH----HHhCCcCCCCcceeccCCeEEEEeCCc
Q psy16770 157 DWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA----RRLGVGSQLPQIALLTDGRTSFFKEPS 222 (554)
Q Consensus 157 ~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~----~~~~v~~~~Pti~~~~~g~~~~y~~g~ 222 (554)
|||++|.+....+.+ .|+.+..+|...++.+. +.-|... +|.+ |.+|+ +.||.
T Consensus 25 ~~Cp~C~~ak~lL~~-------~~i~~~~~di~~~~~~~~~l~~~tg~~t-vP~v--fi~g~---~iGG~ 81 (97)
T TIGR00365 25 PQCGFSARAVQILKA-------CGVPFAYVNVLEDPEIRQGIKEYSNWPT-IPQL--YVKGE---FVGGC 81 (97)
T ss_pred CCCchHHHHHHHHHH-------cCCCEEEEECCCCHHHHHHHHHHhCCCC-CCEE--EECCE---EEeCh
Confidence 999999887655553 35778888987766443 3445565 8876 45674 45664
No 342
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=91.18 E-value=4.5 Score=44.41 Aligned_cols=167 Identities=8% Similarity=0.068 Sum_probs=95.7
Q ss_pred cEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCe--EEEEeCCcccHH
Q psy16770 149 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGR--TSFFKEPSFSVQ 226 (554)
Q Consensus 149 ~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~--~~~y~~g~~~~~ 226 (554)
++-+.++.+.|..|..+....+++++.-. ++.+..-+.. ... .|++.+..+|+ -+.|+|-+ .=.
T Consensus 20 ~v~~~~~~~~~~~~~~~~~~~~~~~~~s~--ki~~~~~~~~----------~~~-~p~~~~~~~~~~~~i~f~g~P-~g~ 85 (515)
T TIGR03140 20 PVTLVLSAGSHEKSKELLELLDEIASLSD--KISLTQNTAD----------TLR-KPSFTILRDGADTGIRFAGIP-GGH 85 (515)
T ss_pred CEEEEEEeCCCchhHHHHHHHHHHHHhCC--CeEEEEecCC----------cCC-CCeEEEecCCcccceEEEecC-CcH
Confidence 44444444479999888887777776543 3555433311 243 89998887765 36777643 335
Q ss_pred HHHHHHHH---hCCCCccccCCcccHHHHHhhhhcCCceEEEEEecCCchh---HHHHHHhh-ccCCceEEEEEEccCCC
Q psy16770 227 KMVEFFRL---KLPYKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVR---LRYLINAF-KHRTTIVFGVIVYDQED 299 (554)
Q Consensus 227 ~i~~fl~~---~~~~~~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~---~~~~~~a~-~~~~~v~Fg~v~~~~~~ 299 (554)
++..|+.. ..++. ..++++..+ .++.. +.+..+-.|....-+. ....+..+ ...+++..-.++.. .
T Consensus 86 Ef~s~i~~i~~~~~~~--~~l~~~~~~-~~~~~--~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~--~ 158 (515)
T TIGR03140 86 EFTSLVLAILQVGGHG--PKLDEGIID-RIRRL--NGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGA--L 158 (515)
T ss_pred HHHHHHHHHHHhcCCC--CCCCHHHHH-HHHhc--CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEch--h
Confidence 56556554 44443 344444443 34332 3444455564333222 22222222 33568888888776 7
Q ss_pred ChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCCCChhHHHhHH
Q psy16770 300 SSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDIT 344 (554)
Q Consensus 300 ~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi 344 (554)
.++++++|++.. .|++++ ++ + .+..+..+...+.+.+
T Consensus 159 ~~~~~~~~~v~~-VP~~~i-~~--~----~~~~g~~~~~~~~~~l 195 (515)
T TIGR03140 159 FQDEVEALGIQG-VPAVFL-NG--E----EFHNGRMDLAELLEKL 195 (515)
T ss_pred CHHHHHhcCCcc-cCEEEE-CC--c----EEEecCCCHHHHHHHH
Confidence 899999999996 999986 21 1 2344555555554444
No 343
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=91.14 E-value=1.1 Score=38.92 Aligned_cols=97 Identities=16% Similarity=0.173 Sum_probs=57.2
Q ss_pred cCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHHhh---ccCCceEEEEEEccCCCC---------hhHHhHhCCC
Q psy16770 243 PLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAF---KHRTTIVFGVIVYDQEDS---------SSVFQRFKVP 310 (554)
Q Consensus 243 ~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~a~---~~~~~v~Fg~v~~~~~~~---------~~l~~k~~i~ 310 (554)
.+|.+++.+.++ .++..+++|....-+..+.+.-.+ .-+..+.|.+++.+.... .++.++|++.
T Consensus 10 ~it~~~~~~~i~----~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~ 85 (122)
T TIGR01295 10 VTTVVRALEALD----KKETATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIP 85 (122)
T ss_pred ecCHHHHHHHHH----cCCcEEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCc
Confidence 456666776663 466778888665555544433222 113567788998763211 1455676654
Q ss_pred C---CCceEEEEeCCCCCCCceeecCCCChhHHHhHHh
Q psy16770 311 G---DKDSLLIFKEDKDRPSASITMNSIPVPTLQDITD 345 (554)
Q Consensus 311 ~---~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~ 345 (554)
. ..||+++|+++... ........+.+.|.+|+.
T Consensus 86 ~~i~~~PT~v~~k~Gk~v--~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 86 TSFMGTPTFVHITDGKQV--SVRCGSSTTAQELQDIAA 121 (122)
T ss_pred ccCCCCCEEEEEeCCeEE--EEEeCCCCCHHHHHHHhh
Confidence 1 28999999986442 122233556778887764
No 344
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=90.34 E-value=0.37 Score=44.38 Aligned_cols=42 Identities=33% Similarity=0.560 Sum_probs=34.5
Q ss_pred CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEe
Q psy16770 146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHV 188 (554)
Q Consensus 146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~ 188 (554)
..++.++.|+.+.|+||+++++...++.+++.+ ++.+..+..
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~-~v~~~~~~~ 55 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK-DVKFEKVPV 55 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC-CceEEEcCC
Confidence 467889999999999999999999999888854 466655544
No 345
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=89.86 E-value=1.9 Score=47.98 Aligned_cols=101 Identities=10% Similarity=0.113 Sum_probs=62.4
Q ss_pred CcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHH------hh-ccCCceEEEEEEccCC--CChhHHhHhCCCCCCce
Q psy16770 245 SATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLIN------AF-KHRTTIVFGVIVYDQE--DSSSVFQRFKVPGDKDS 315 (554)
Q Consensus 245 t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~------a~-~~~~~v~Fg~v~~~~~--~~~~l~~k~~i~~~~Pt 315 (554)
+.+++++.++.....++++++.|...--...+.... .. +..+++.+..+|.+.. .+.+++++|++.+ .|+
T Consensus 459 s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v~g-~Pt 537 (571)
T PRK00293 459 TVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNVLG-LPT 537 (571)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCCCC-CCE
Confidence 446666666543345678888885443333322211 11 1124577888887642 2467899999997 999
Q ss_pred EEEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770 316 LLIFKEDKDRPSASITMNSIPVPTLQDITDN 346 (554)
Q Consensus 316 lvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~ 346 (554)
+++|+++.+........+..+.+.+.+++++
T Consensus 538 ~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~ 568 (571)
T PRK00293 538 ILFFDAQGQEIPDARVTGFMDAAAFAAHLRQ 568 (571)
T ss_pred EEEECCCCCCcccccccCCCCHHHHHHHHHH
Confidence 9999865443212344567788888887765
No 346
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=89.64 E-value=2.9 Score=39.45 Aligned_cols=110 Identities=15% Similarity=0.163 Sum_probs=67.2
Q ss_pred cCCCcccccccchhhhhhcCCCC--ceEEEEEc-CCCCcchhHHHHHHHHHhhccCCCCceEEEEEecccchHHHHhhCC
Q psy16770 346 NNPYLTLPRISSQSMLDAVCPVK--KLCVVLFS-EDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTS 422 (554)
Q Consensus 346 ~~~~~~v~~lt~~~~~~~~c~~~--~lcvvl~~-~~~~~~~~~~~~l~~~a~~~~~~~~~v~F~~vd~~~q~~~~~~~~~ 422 (554)
..++..+.+++..++...+.... ..+||.|. +....+....+.|.++|++ |. .++|+.|++++. ...|
T Consensus 78 ~~~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k--~~--~vkFvkI~ad~~---~~~~-- 148 (192)
T cd02988 78 KSKFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARK--FP--DTKFVKIISTQC---IPNY-- 148 (192)
T ss_pred hCCCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHH--CC--CCEEEEEEhHHh---HhhC--
Confidence 34567777788777776554322 46777665 5556778888899999999 84 489999999642 3444
Q ss_pred CCCCccccceEEEEEEecCCCeeEEEecCCCCCcccccchhhHHHHHHHHh
Q psy16770 423 PEDSSEISLHIAAMWRMDYKKIKYGWLLGDAVDDWKDYNTTKDRLDAGLRS 473 (554)
Q Consensus 423 ~~~~~~~~~~~~~v~~~~~~~~ky~~~~~~~~~~~~~~~~t~e~l~~fl~~ 473 (554)
. ...+|.+..... +....-+-|. .++.+.++|.+.|+.+|.+
T Consensus 149 -----~-i~~lPTlliyk~-G~~v~~ivG~--~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 149 -----P-DKNLPTILVYRN-GDIVKQFIGL--LEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred -----C-CCCCCEEEEEEC-CEEEEEEeCc--hhhCCCCCCHHHHHHHHHh
Confidence 1 124554433322 2222222221 1244557899999888764
No 347
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=88.91 E-value=2 Score=35.84 Aligned_cols=90 Identities=14% Similarity=0.284 Sum_probs=60.3
Q ss_pred ccccccccccCCC-CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceecc
Q psy16770 133 THWNFEKNYIPKS-YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLT 211 (554)
Q Consensus 133 t~~~F~~~v~~~~-~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~ 211 (554)
|.++.++++ + .+.+.+|-|+..--. .....|.++|..++. .+.|+.. .+..+..++++. .|++++++
T Consensus 7 ~~~~~e~~~---~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~-d~~F~~~---~~~~~~~~~~~~--~~~i~l~~ 74 (102)
T cd03066 7 SERELQAFE---NIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHP-YIKFFAT---FDSKVAKKLGLK--MNEVDFYE 74 (102)
T ss_pred CHHHHHHHh---cccCCeEEEEEECCCCC---HHHHHHHHHHHhhhc-CCEEEEE---CcHHHHHHcCCC--CCcEEEeC
Confidence 344566666 3 455667766655333 355689999999965 3677543 355778888875 69999996
Q ss_pred C-Ce-EEEEeCCcccHHHHHHHHHH
Q psy16770 212 D-GR-TSFFKEPSFSVQKMVEFFRL 234 (554)
Q Consensus 212 ~-g~-~~~y~~g~~~~~~i~~fl~~ 234 (554)
+ .. ...|.+|..+.+.|.+|+..
T Consensus 75 ~~~e~~~~y~~g~~~~~~l~~fi~~ 99 (102)
T cd03066 75 PFMEEPVTIPDKPYSEEELVDFVEE 99 (102)
T ss_pred CCCCCCcccCCCCCCHHHHHHHHHH
Confidence 5 33 34453566688999999974
No 348
>KOG3171|consensus
Probab=88.49 E-value=0.48 Score=44.45 Aligned_cols=84 Identities=17% Similarity=0.235 Sum_probs=65.6
Q ss_pred ccccc-cccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770 129 KLSTT-HWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI 207 (554)
Q Consensus 129 ~~~Lt-~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti 207 (554)
|++|+ .++|-+.|-..-+....+|..|-|.-.-|..+.....=+|.++- .++|.+|-.+ +.....+|..++ +||+
T Consensus 140 V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP--~vKFckikss-~~gas~~F~~n~-lP~L 215 (273)
T KOG3171|consen 140 VYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYP--IVKFCKIKSS-NTGASDRFSLNV-LPTL 215 (273)
T ss_pred EEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCC--ceeEEEeeec-cccchhhhcccC-CceE
Confidence 66664 57888888544355678899999999999999988888888774 3899988765 344578899997 9999
Q ss_pred eeccCCeEE
Q psy16770 208 ALLTDGRTS 216 (554)
Q Consensus 208 ~~~~~g~~~ 216 (554)
.+|++|+.+
T Consensus 216 liYkgGeLI 224 (273)
T KOG3171|consen 216 LIYKGGELI 224 (273)
T ss_pred EEeeCCchh
Confidence 999988643
No 349
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=88.12 E-value=2.2 Score=36.01 Aligned_cols=74 Identities=19% Similarity=0.202 Sum_probs=48.4
Q ss_pred ccCCcccHHHHHhhhhcCCceEEEEEecCCc--h---hHH-HH-HHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCc
Q psy16770 242 VPLSATNVDAFLDNWREDNKVHALLFQRSLP--V---RLR-YL-INAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKD 314 (554)
Q Consensus 242 ~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~--~---~~~-~~-~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~P 314 (554)
..++.++++.|++ .....+++|..... + ... .. .+...+.+....+.+... ....+..+|++.. .|
T Consensus 12 ~~vd~~~ld~~l~----~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~--~e~~L~~r~gv~~-~P 84 (107)
T PF07449_consen 12 PRVDADTLDAFLA----APGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARA--AERALAARFGVRR-WP 84 (107)
T ss_dssp EEE-CCCHHHHHH----CCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHH--HHHHHHHHHT-TS-SS
T ss_pred eeechhhHHHHHh----CCCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECch--hHHHHHHHhCCcc-CC
Confidence 4567788999995 35667788854321 1 111 11 122256778888888633 5788999999997 99
Q ss_pred eEEEEeCC
Q psy16770 315 SLLIFKED 322 (554)
Q Consensus 315 tlvvfk~~ 322 (554)
++++|+++
T Consensus 85 aLvf~R~g 92 (107)
T PF07449_consen 85 ALVFFRDG 92 (107)
T ss_dssp EEEEEETT
T ss_pred eEEEEECC
Confidence 99999974
No 350
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=87.79 E-value=3.1 Score=36.00 Aligned_cols=75 Identities=16% Similarity=0.047 Sum_probs=45.9
Q ss_pred CcccHHHHHhhhhcCCceEEEEEec-------CCchhHHHH-----HHhhccCCceEEEEEEccCC-----CChhHHhHh
Q psy16770 245 SATNVDAFLDNWREDNKVHALLFQR-------SLPVRLRYL-----INAFKHRTTIVFGVIVYDQE-----DSSSVFQRF 307 (554)
Q Consensus 245 t~~~~~~fl~~~~~~~~~~v~~f~~-------~~~~~~~~~-----~~a~~~~~~v~Fg~v~~~~~-----~~~~l~~k~ 307 (554)
+.+++.+.+.. ..++++++.|.. .--++.+.. ..+.++.+++.|..++++.. .+.++++++
T Consensus 8 ~~~~f~~~i~~--~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~ 85 (119)
T cd02952 8 GYEEFLKLLKS--HEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDP 85 (119)
T ss_pred CHHHHHHHHHh--cCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhcc
Confidence 34556555543 135677777755 222222211 11224455789999998641 256899999
Q ss_pred CCC-CCCceEEEEeCC
Q psy16770 308 KVP-GDKDSLLIFKED 322 (554)
Q Consensus 308 ~i~-~~~Ptlvvfk~~ 322 (554)
+|. + .||+++|+.+
T Consensus 86 ~I~~~-iPT~~~~~~~ 100 (119)
T cd02952 86 KLTTG-VPTLLRWKTP 100 (119)
T ss_pred CcccC-CCEEEEEcCC
Confidence 998 6 9999999653
No 351
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=87.65 E-value=0.58 Score=44.73 Aligned_cols=42 Identities=26% Similarity=0.610 Sum_probs=32.8
Q ss_pred CCcEEEEEEcccccccccchHHH---HHHHHHhCCCCEEEEEEEec
Q psy16770 147 TTPHLILFYSDWCFACLQVEPIF---KKLMDELSPLGVGFFTVHVH 189 (554)
Q Consensus 147 ~~~~lV~Fya~wC~~C~~l~p~~---~~~a~~l~~~~v~~~~Vd~~ 189 (554)
+++-+|+|+.-.|+||.++.|.+ ..+.+.+.+ ++.+..+...
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~-~v~~~~~~~~ 81 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE-GTKMTKYHVE 81 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC-CCeEEEeccc
Confidence 35679999999999999999876 667777754 5777776653
No 352
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=86.97 E-value=0.78 Score=48.75 Aligned_cols=59 Identities=14% Similarity=0.210 Sum_probs=40.6
Q ss_pred EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHH---HH---------hCCcCCCCcceeccCCeEEEE
Q psy16770 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA---RR---------LGVGSQLPQIALLTDGRTSFF 218 (554)
Q Consensus 151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~---~~---------~~v~~~~Pti~~~~~g~~~~y 218 (554)
++.|..+||++|++....+. ..|+.+..||.++++... ++ .|.++ +|++.+ +|+ +
T Consensus 4 V~vys~~~Cp~C~~aK~~L~-------~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~t-vP~ifi--~~~---~ 70 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFG-------ANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRT-VPQIFV--GDV---H 70 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHH-------HCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCc-cCeEEE--CCE---E
Confidence 56799999999987665554 346888889998766322 23 36676 999855 554 4
Q ss_pred eCCc
Q psy16770 219 KEPS 222 (554)
Q Consensus 219 ~~g~ 222 (554)
.||.
T Consensus 71 igGf 74 (410)
T PRK12759 71 IGGY 74 (410)
T ss_pred EeCc
Confidence 4565
No 353
>KOG1752|consensus
Probab=86.16 E-value=2.6 Score=35.50 Aligned_cols=63 Identities=14% Similarity=0.382 Sum_probs=37.7
Q ss_pred CcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcH-----HHHHHhCCcCCCCcceeccCCeEEEEeCCc
Q psy16770 148 TPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQ-----GLARRLGVGSQLPQIALLTDGRTSFFKEPS 222 (554)
Q Consensus 148 ~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~-----~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~ 222 (554)
.++ |.|..+||+.|+++...|.+ +. ....+..+|-..+. .|.+.-|.+. +|.+ |.+|+.+ ||.
T Consensus 14 ~~V-VifSKs~C~~c~~~k~ll~~----~~-v~~~vvELD~~~~g~eiq~~l~~~tg~~t-vP~v--FI~Gk~i---GG~ 81 (104)
T KOG1752|consen 14 NPV-VIFSKSSCPYCHRAKELLSD----LG-VNPKVVELDEDEDGSEIQKALKKLTGQRT-VPNV--FIGGKFI---GGA 81 (104)
T ss_pred CCE-EEEECCcCchHHHHHHHHHh----CC-CCCEEEEccCCCCcHHHHHHHHHhcCCCC-CCEE--EECCEEE---cCH
Confidence 354 45999999999997766665 32 23556666655433 2333334444 7764 5578654 664
No 354
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=86.02 E-value=3.5 Score=34.58 Aligned_cols=88 Identities=20% Similarity=0.280 Sum_probs=57.9
Q ss_pred cccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccC-
Q psy16770 134 HWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTD- 212 (554)
Q Consensus 134 ~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~- 212 (554)
.++.++.+ ..+++.+|-|+..--. .....|.++|..++. .+.|+... +..+..++++ + |++++|+.
T Consensus 8 ~~~l~~f~---~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~-d~~F~~~~---~~~~~~~~~~-~--~~ivl~~p~ 74 (104)
T cd03069 8 EAEFEKFL---SDDDASVVGFFEDEDS---KLLSEFLKAADTLRE-SFRFAHTS---DKQLLEKYGY-G--EGVVLFRPP 74 (104)
T ss_pred HHHHHHHh---ccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhh-cCEEEEEC---hHHHHHhcCC-C--CceEEEech
Confidence 34455555 3456777777755433 466789999999965 36775443 4577888888 6 78888832
Q ss_pred -------CeEEEEeCCcccHHHHHHHHHHh
Q psy16770 213 -------GRTSFFKEPSFSVQKMVEFFRLK 235 (554)
Q Consensus 213 -------g~~~~y~~g~~~~~~i~~fl~~~ 235 (554)
.....|.|. .+.+.|.+|+...
T Consensus 75 ~~~~k~de~~~~y~g~-~~~~~l~~fi~~~ 103 (104)
T cd03069 75 RLSNKFEDSSVKFDGD-LDSSKIKKFIREN 103 (104)
T ss_pred hhhcccCcccccccCc-CCHHHHHHHHHhh
Confidence 223446654 4678999999754
No 355
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=85.72 E-value=1.3 Score=40.15 Aligned_cols=53 Identities=21% Similarity=0.282 Sum_probs=40.8
Q ss_pred CcEEEEEEcccccccccc-hHHHHHHHHHhCCCCE-EEEEEEecC---cHHHHHHhCC
Q psy16770 148 TPHLILFYSDWCFACLQV-EPIFKKLMDELSPLGV-GFFTVHVHN---EQGLARRLGV 200 (554)
Q Consensus 148 ~~~lV~Fya~wC~~C~~l-~p~~~~~a~~l~~~~v-~~~~Vd~~~---~~~l~~~~~v 200 (554)
..+|+.|-+.||+.|... .+.|.+..++++..|+ .+..|.++. ..+.++++++
T Consensus 31 ~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~ 88 (155)
T cd03013 31 KVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGA 88 (155)
T ss_pred cEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCC
Confidence 355555558899999998 9999999999987777 588888776 4456667666
No 356
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=85.39 E-value=4.1 Score=35.79 Aligned_cols=77 Identities=17% Similarity=0.291 Sum_probs=52.1
Q ss_pred cEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCC-CcceeccCCeEEEEeCCcccHHH
Q psy16770 149 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQL-PQIALLTDGRTSFFKEPSFSVQK 227 (554)
Q Consensus 149 ~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~-Pti~~~~~g~~~~y~~g~~~~~~ 227 (554)
.-++.+++|.||=|.... +.|+..|+.+-.+..+.-..+-+++||..+. -+-....+|..+ .|-.-+++
T Consensus 26 ~~~~vyksPnCGCC~~w~-------~~mk~~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI~Gy~v---EGHVPa~a 95 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWA-------QHMKANGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVINGYYV---EGHVPAEA 95 (149)
T ss_pred eeEEEEeCCCCccHHHHH-------HHHHhCCcEEEEeecCcHHHHHHhcCCChhhccccEEEEcCEEE---eccCCHHH
Confidence 346779999999997533 3344457888888888888888889987411 122233467443 35557789
Q ss_pred HHHHHHHh
Q psy16770 228 MVEFFRLK 235 (554)
Q Consensus 228 i~~fl~~~ 235 (554)
|..++.+.
T Consensus 96 I~~ll~~~ 103 (149)
T COG3019 96 IARLLAEK 103 (149)
T ss_pred HHHHHhCC
Confidence 98888765
No 357
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=85.09 E-value=8.3 Score=30.06 Aligned_cols=77 Identities=16% Similarity=0.311 Sum_probs=51.5
Q ss_pred EEEcCCCCcchhHHHHHHHHHhhccCCCCceEEEEEecccchHHHHhhCCCCCCccccceEEEEEEecCCCeeEEEecCC
Q psy16770 373 VLFSEDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPEDSSEISLHIAAMWRMDYKKIKYGWLLGD 452 (554)
Q Consensus 373 vl~~~~~~~~~~~~~~l~~~a~~~~~~~~~v~F~~vd~~~q~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ky~~~~~~ 452 (554)
++..+....+....+.+.+++++ ++. .+.+..||.++.++.++.+ . ...+|.+.. +. +.++ .|.
T Consensus 5 ~f~~~~C~~C~~~~~~l~~l~~~--~~~-~~~~~~vd~~~~~~~~~~~-------~-v~~vPt~~~-~g-~~~~---~G~ 68 (82)
T TIGR00411 5 LFTSPTCPYCPAAKRVVEEVAKE--MGD-AVEVEYINVMENPQKAMEY-------G-IMAVPAIVI-NG-DVEF---IGA 68 (82)
T ss_pred EEECCCCcchHHHHHHHHHHHHH--hcC-ceEEEEEeCccCHHHHHHc-------C-CccCCEEEE-CC-EEEE---ecC
Confidence 44456667788889999999988 753 4899999998888887776 1 135676554 22 2233 231
Q ss_pred CCCcccccchhhHHHHHHHHhh
Q psy16770 453 AVDDWKDYNTTKDRLDAGLRSL 474 (554)
Q Consensus 453 ~~~~~~~~~~t~e~l~~fl~~~ 474 (554)
.+.+.|.++|++.
T Consensus 69 ---------~~~~~l~~~l~~~ 81 (82)
T TIGR00411 69 ---------PTKEELVEAIKKR 81 (82)
T ss_pred ---------CCHHHHHHHHHhh
Confidence 2557777777764
No 358
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=84.83 E-value=3.2 Score=32.31 Aligned_cols=72 Identities=13% Similarity=0.134 Sum_probs=45.5
Q ss_pred EEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCc-HHHHHHhCCcCCCCcceeccCCeEEEEeCCcccHHHHHHHH
Q psy16770 154 FYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE-QGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFF 232 (554)
Q Consensus 154 Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~-~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~~i~~fl 232 (554)
++.++|+.|.+..= +-.+++..+.+..|+.... ..+.+...-. ++|++. .+|..+. +...|.+|+
T Consensus 2 y~~~~Sp~~~kv~~-----~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~-~vPvL~--~~g~~l~------dS~~I~~yL 67 (75)
T PF13417_consen 2 YGFPGSPYSQKVRL-----ALEEKGIPYELVPVDPEEKRPEFLKLNPKG-KVPVLV--DDGEVLT------DSAAIIEYL 67 (75)
T ss_dssp EEETTSHHHHHHHH-----HHHHHTEEEEEEEEBTTSTSHHHHHHSTTS-BSSEEE--ETTEEEE------SHHHHHHHH
T ss_pred CCcCCChHHHHHHH-----HHHHcCCeEEEeccCcccchhHHHhhcccc-cceEEE--ECCEEEe------CHHHHHHHH
Confidence 67889999988553 3333343455555555443 4455555544 599997 4565332 458999999
Q ss_pred HHhCCCC
Q psy16770 233 RLKLPYK 239 (554)
Q Consensus 233 ~~~~~~~ 239 (554)
.++.+.+
T Consensus 68 ~~~~~~~ 74 (75)
T PF13417_consen 68 EERYPGP 74 (75)
T ss_dssp HHHSTSS
T ss_pred HHHcCCC
Confidence 9887654
No 359
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=83.86 E-value=10 Score=32.09 Aligned_cols=93 Identities=13% Similarity=0.111 Sum_probs=54.1
Q ss_pred HHHHHhhhhcCCceEEEEEecCCchhHHHHHHh-h-------ccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEe
Q psy16770 249 VDAFLDNWREDNKVHALLFQRSLPVRLRYLINA-F-------KHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFK 320 (554)
Q Consensus 249 ~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~a-~-------~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk 320 (554)
+++.++.....+++++++|.....+....+... + .+..++.+-.++.+......++..|++.+ +|+++++.
T Consensus 6 ~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~-~P~~~~i~ 84 (114)
T cd02958 6 FEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDK-YPHIAIID 84 (114)
T ss_pred HHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccC-CCeEEEEe
Confidence 344443333568888888876655433332221 1 22344555555655445567899999997 99999998
Q ss_pred C-CCCCCCceeecCCCChhHHHhHH
Q psy16770 321 E-DKDRPSASITMNSIPVPTLQDIT 344 (554)
Q Consensus 321 ~-~~~~~~~~i~~~~~~~~~l~~fi 344 (554)
+ +.... ....|..+.+.+..-+
T Consensus 85 ~~~g~~l--~~~~G~~~~~~f~~~L 107 (114)
T cd02958 85 PRTGEVL--KVWSGNITPEDLLSQL 107 (114)
T ss_pred CccCcEe--EEEcCCCCHHHHHHHH
Confidence 7 33322 2345666666554443
No 360
>KOG2603|consensus
Probab=82.85 E-value=9.9 Score=38.11 Aligned_cols=106 Identities=14% Similarity=0.273 Sum_probs=65.0
Q ss_pred CCccccCCcccHHHHHhhhhcCCceEEEEEecC-----------CchhHHHHHHhhc----cCC--ceEEEEEEccCCCC
Q psy16770 238 YKLIVPLSATNVDAFLDNWREDNKVHALLFQRS-----------LPVRLRYLINAFK----HRT--TIVFGVIVYDQEDS 300 (554)
Q Consensus 238 ~~~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~-----------~~~~~~~~~~a~~----~~~--~v~Fg~v~~~~~~~ 300 (554)
+.-|...+++.+..|+..- ..|-..+++|+.. ...+....+.+.. ..+ ++-|+.||.+ +.
T Consensus 39 ~~~VI~~n~d~~~~~v~~~-prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~--e~ 115 (331)
T KOG2603|consen 39 ESGVIRMNDDKFSKFVRPP-PRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYD--ES 115 (331)
T ss_pred CCCeEEecCcchhhhccCC-CCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEecc--cc
Confidence 3447788999999999742 2344556666421 1122222222221 122 6779999887 68
Q ss_pred hhHHhHhCCCCCCceEEEEeCCCCCCCce----eecCCCChhHHHhHHhcC
Q psy16770 301 SSVFQRFKVPGDKDSLLIFKEDKDRPSAS----ITMNSIPVPTLQDITDNN 347 (554)
Q Consensus 301 ~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~----i~~~~~~~~~l~~fi~~~ 347 (554)
+++.+.++++. .|.+++|++....+... .+.-....+.+.+|++.-
T Consensus 116 p~~Fq~l~ln~-~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~ 165 (331)
T KOG2603|consen 116 PQVFQQLNLNN-VPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADR 165 (331)
T ss_pred HHHHHHhcccC-CCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHh
Confidence 99999999997 99999997744333211 112223466788888754
No 361
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=82.64 E-value=2.1 Score=40.39 Aligned_cols=40 Identities=23% Similarity=0.368 Sum_probs=33.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCCh
Q psy16770 28 PRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDA 74 (554)
Q Consensus 28 ~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~ 74 (554)
+++||.+||++|+.++..+|--| ++.-.+|..||+.+.=.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd-------~~~~~~IEaAYD~ILM~ 40 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGD-------EKSREAIEAAYDAILME 40 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHHHHH
Confidence 57899999999999999999443 46778899999987544
No 362
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=80.57 E-value=3.3 Score=37.53 Aligned_cols=44 Identities=23% Similarity=0.498 Sum_probs=35.9
Q ss_pred CCcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecC
Q psy16770 147 TTPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN 190 (554)
Q Consensus 147 ~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~ 190 (554)
++++++.|| .++++-|...+-.|.+...+++..|+.+.-|..+.
T Consensus 30 Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds 74 (157)
T COG1225 30 GKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDS 74 (157)
T ss_pred CCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 447788888 57899999999999999999987787877776654
No 363
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=80.18 E-value=2.7 Score=35.41 Aligned_cols=76 Identities=16% Similarity=0.242 Sum_probs=39.7
Q ss_pred CCcccHHHHHhhhhcCCceEEEEEecCC-ch----hHHHHHHhh-ccCCceEEEEEEccC--CCChhHHhHhCCCCCCce
Q psy16770 244 LSATNVDAFLDNWREDNKVHALLFQRSL-PV----RLRYLINAF-KHRTTIVFGVIVYDQ--EDSSSVFQRFKVPGDKDS 315 (554)
Q Consensus 244 ~t~~~~~~fl~~~~~~~~~~v~~f~~~~-~~----~~~~~~~a~-~~~~~v~Fg~v~~~~--~~~~~l~~k~~i~~~~Pt 315 (554)
.|.++++++++. +.+++ +++|.-.. -+ .+..+.... ...+.+.+++++.-. .-+..++++|||...-|-
T Consensus 5 ~t~eql~~i~~~--S~~~~-~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ 81 (105)
T PF11009_consen 5 TTEEQLEEILEE--SKEKP-VLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQ 81 (105)
T ss_dssp -SHHHHHHHHHH-----SE-EEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSE
T ss_pred CCHHHHHHHHHh--cccCc-EEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCc
Confidence 356889999875 23444 55563322 11 222222222 223349999998763 224568999999988999
Q ss_pred EEEEeCC
Q psy16770 316 LLIFKED 322 (554)
Q Consensus 316 lvvfk~~ 322 (554)
+++++++
T Consensus 82 ~ili~~g 88 (105)
T PF11009_consen 82 VILIKNG 88 (105)
T ss_dssp EEEEETT
T ss_pred EEEEECC
Confidence 9999974
No 364
>KOG0914|consensus
Probab=78.18 E-value=5.1 Score=37.98 Aligned_cols=43 Identities=16% Similarity=0.363 Sum_probs=33.9
Q ss_pred Hhhcc-CCceEEEEEEccCCCChhHHhHhCCC-----CCCceEEEEeCCCC
Q psy16770 280 NAFKH-RTTIVFGVIVYDQEDSSSVFQRFKVP-----GDKDSLLIFKEDKD 324 (554)
Q Consensus 280 ~a~~~-~~~v~Fg~v~~~~~~~~~l~~k~~i~-----~~~Ptlvvfk~~~~ 324 (554)
++.++ .+.++||.+|.+ --++++++|+|+ .+.||+++|+++.+
T Consensus 169 LS~kyn~~~lkFGkvDiG--rfpd~a~kfris~s~~srQLPT~ilFq~gkE 217 (265)
T KOG0914|consen 169 LSIKYNNNLLKFGKVDIG--RFPDVAAKFRISLSPGSRQLPTYILFQKGKE 217 (265)
T ss_pred HHHHhCCCCCcccceeec--cCcChHHheeeccCcccccCCeEEEEccchh
Confidence 34433 567899999988 578899999997 45899999988655
No 365
>smart00594 UAS UAS domain.
Probab=78.10 E-value=20 Score=30.80 Aligned_cols=95 Identities=13% Similarity=0.110 Sum_probs=53.1
Q ss_pred cHHHHHhhhhcCCceEEEEEecCCchhHHHHHHh-h-------ccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEE
Q psy16770 248 NVDAFLDNWREDNKVHALLFQRSLPVRLRYLINA-F-------KHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIF 319 (554)
Q Consensus 248 ~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~a-~-------~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvf 319 (554)
.+++.++....+.|.+++++.....+....+... + .+..++.+-.++.+..+...++.+|++.+ +|+++++
T Consensus 15 s~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~-~P~~~~l 93 (122)
T smart00594 15 SLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDS-FPYVAIV 93 (122)
T ss_pred CHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCC-CCEEEEE
Confidence 4444444333467777777765544332222221 1 12335555556666556677999999997 9999999
Q ss_pred eCCCC-CCCce--eecCCCChhHHHhH
Q psy16770 320 KEDKD-RPSAS--ITMNSIPVPTLQDI 343 (554)
Q Consensus 320 k~~~~-~~~~~--i~~~~~~~~~l~~f 343 (554)
.+... ....+ ...|.++.+.+..+
T Consensus 94 ~~~~g~~~~~~~~~~~G~~~~~~l~~~ 120 (122)
T smart00594 94 DPRTGQRVIEWVGVVEGEISPEELMTF 120 (122)
T ss_pred ecCCCceeEEEeccccCCCCHHHHHHh
Confidence 76432 11111 23466665555443
No 366
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=77.45 E-value=6.2 Score=33.05 Aligned_cols=84 Identities=12% Similarity=0.119 Sum_probs=45.8
Q ss_pred cCCceEEEEEecCCchhHHHHHHh--------hccCCceEEEEEEccCCC------------------ChhHHhHhCCCC
Q psy16770 258 EDNKVHALLFQRSLPVRLRYLINA--------FKHRTTIVFGVIVYDQED------------------SSSVFQRFKVPG 311 (554)
Q Consensus 258 ~~~~~~v~~f~~~~~~~~~~~~~a--------~~~~~~v~Fg~v~~~~~~------------------~~~l~~k~~i~~ 311 (554)
++.++.+++|.+..-+..+.+... ..+++++.+..++..... +.++.++|+|.+
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 356778888866554443322211 123345666666655211 235889999998
Q ss_pred CCceEEEEeCCCCCCCceeecCCCChhHHHhHH
Q psy16770 312 DKDSLLIFKEDKDRPSASITMNSIPVPTLQDIT 344 (554)
Q Consensus 312 ~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi 344 (554)
.||++++.++++.. ....|-++.+.|.+++
T Consensus 83 -tPt~~~~d~~G~~v--~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 83 -TPTIVFLDKDGKIV--YRIPGYLSPEELLKML 112 (112)
T ss_dssp -SSEEEECTTTSCEE--EEEESS--HHHHHHHH
T ss_pred -cCEEEEEcCCCCEE--EEecCCCCHHHHHhhC
Confidence 99999997543322 2356777777776543
No 367
>PF13446 RPT: A repeated domain in UCH-protein
Probab=75.77 E-value=3.8 Score=30.80 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=24.6
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHH
Q psy16770 19 LDPYETLGVPRTASLQEIRKNYKRLVV 45 (554)
Q Consensus 19 ~d~y~~Lgv~~~a~~~~ik~ay~~l~~ 45 (554)
.+.|+.|||+++++.+.|-.+|+....
T Consensus 5 ~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 5 EEAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 356999999999999999999999887
No 368
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=75.51 E-value=8.4 Score=30.01 Aligned_cols=58 Identities=16% Similarity=0.142 Sum_probs=43.5
Q ss_pred EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCccee
Q psy16770 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIAL 209 (554)
Q Consensus 151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~ 209 (554)
|..|-+...+.+.+......++-+++.+..+.+-.||..+++.+++.++|-. .||++=
T Consensus 4 L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivA-tPtLvk 61 (72)
T cd02978 4 LRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVA-TPTLVK 61 (72)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEE-echhhh
Confidence 4445555556666666666666666544469999999999999999999996 999753
No 369
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=75.41 E-value=11 Score=28.17 Aligned_cols=31 Identities=13% Similarity=0.166 Sum_probs=26.0
Q ss_pred CCceEEEEEEccCCCChhHHhHhCCCCCCceEEE
Q psy16770 285 RTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLI 318 (554)
Q Consensus 285 ~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvv 318 (554)
.+.+.|..++.+ .++++++++++.+ .|++++
T Consensus 28 ~~~i~~~~id~~--~~~~l~~~~~i~~-vPti~i 58 (67)
T cd02973 28 NPNISAEMIDAA--EFPDLADEYGVMS-VPAIVI 58 (67)
T ss_pred CCceEEEEEEcc--cCHhHHHHcCCcc-cCEEEE
Confidence 457899999876 6788999999986 999876
No 370
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=74.30 E-value=8 Score=29.54 Aligned_cols=57 Identities=19% Similarity=0.311 Sum_probs=33.2
Q ss_pred EEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC-cHHHHHHhCCcCCCCcceeccCCeE
Q psy16770 152 ILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN-EQGLARRLGVGSQLPQIALLTDGRT 215 (554)
Q Consensus 152 V~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~-~~~l~~~~~v~~~~Pti~~~~~g~~ 215 (554)
+.|+.+||+.|.+..-.++ .++..+....||... .+++.+..... ++|++.. .+|..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~-----~~gl~~e~~~v~~~~~~~~~~~~np~~-~vP~L~~-~~g~~ 59 (71)
T cd03060 2 ILYSFRRCPYAMRARMALL-----LAGITVELREVELKNKPAEMLAASPKG-TVPVLVL-GNGTV 59 (71)
T ss_pred EEEecCCCcHHHHHHHHHH-----HcCCCcEEEEeCCCCCCHHHHHHCCCC-CCCEEEE-CCCcE
Confidence 4577899999987653333 234445556666543 34454444554 5999854 33543
No 371
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=73.62 E-value=10 Score=37.62 Aligned_cols=63 Identities=13% Similarity=0.048 Sum_probs=37.5
Q ss_pred cCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCC--CCcee--ecCCCChhHHHhHHhcCCCc
Q psy16770 284 HRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDR--PSASI--TMNSIPVPTLQDITDNNPYL 350 (554)
Q Consensus 284 ~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~--~~~~i--~~~~~~~~~l~~fi~~~~~~ 350 (554)
-...++|..+... ...+..+|.+.. .|||++|+++.-. .+.+. -..++....|..|+..+...
T Consensus 174 kyp~vKFvkI~a~---~~~~~~~f~~~~-LPtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G~l 240 (265)
T PF02114_consen 174 KYPEVKFVKIRAS---KCPASENFPDKN-LPTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYGVL 240 (265)
T ss_dssp H-TTSEEEEEEEC---GCCTTTTS-TTC--SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTTTSS
T ss_pred hCCceEEEEEehh---ccCcccCCcccC-CCEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHcCCC
Confidence 3578999988654 122678899886 9999999974221 11111 13467778899999876443
No 372
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=73.34 E-value=5.4 Score=32.99 Aligned_cols=57 Identities=26% Similarity=0.294 Sum_probs=39.1
Q ss_pred cccccccccchHHHHHHHHHhCCCC-EEEEEEEecCcHHHHHHhCCcCCCCcc-eeccCCeEEEEeCCc
Q psy16770 156 SDWCFACLQVEPIFKKLMDELSPLG-VGFFTVHVHNEQGLARRLGVGSQLPQI-ALLTDGRTSFFKEPS 222 (554)
Q Consensus 156 a~wC~~C~~l~p~~~~~a~~l~~~~-v~~~~Vd~~~~~~l~~~~~v~~~~Pti-~~~~~g~~~~y~~g~ 222 (554)
.|-||.+.+ +.+.|...| +.|+.||.-.++++.+...--+..||+ .+|.+|+ +.||.
T Consensus 27 ~P~CGFS~~-------~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GE---fvGG~ 85 (105)
T COG0278 27 FPQCGFSAQ-------AVQILSACGVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGE---FVGGC 85 (105)
T ss_pred CCCCCccHH-------HHHHHHHcCCcceeEEeeccCHHHHhccHhhcCCCCCceeeECCE---EeccH
Confidence 466776654 444444446 899999999999997765433348887 6788885 45663
No 373
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=69.37 E-value=27 Score=26.92 Aligned_cols=72 Identities=15% Similarity=0.347 Sum_probs=40.1
Q ss_pred EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC--cHHHHHHhCCcCCCCcceecc--CCeEEEEeCCcccHH
Q psy16770 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN--EQGLARRLGVGSQLPQIALLT--DGRTSFFKEPSFSVQ 226 (554)
Q Consensus 151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~--~~~l~~~~~v~~~~Pti~~~~--~g~~~~y~~g~~~~~ 226 (554)
+..|+.+.|+.|++..-.+. .+ |+.+-.++.+. ...+ +.-+.. .+|++..=. +|..+ ....
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~-----~~--gi~y~~~~~~~~~~~~~-~~~~~~-~vP~l~~~~~~~~~~l------~eS~ 66 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLD-----YH--GIPYEVVEVNPVSRKEI-KWSSYK-KVPILRVESGGDGQQL------VDSS 66 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHH-----HC--CCceEEEECCchhHHHH-HHhCCC-ccCEEEECCCCCccEE------EcHH
Confidence 34578899999988663332 23 34444444432 2333 233444 499887532 23221 2347
Q ss_pred HHHHHHHHhCC
Q psy16770 227 KMVEFFRLKLP 237 (554)
Q Consensus 227 ~i~~fl~~~~~ 237 (554)
.|.+|+.+.++
T Consensus 67 ~I~~yL~~~~~ 77 (77)
T cd03040 67 VIISTLKTYLG 77 (77)
T ss_pred HHHHHHHHHcC
Confidence 88889887653
No 374
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=68.93 E-value=7.5 Score=36.36 Aligned_cols=44 Identities=23% Similarity=0.303 Sum_probs=34.2
Q ss_pred HHHHHHhCCcCCCCcceeccCCeEEEEeCC--cccHHHHHHHHHHhC
Q psy16770 192 QGLARRLGVGSQLPQIALLTDGRTSFFKEP--SFSVQKMVEFFRLKL 236 (554)
Q Consensus 192 ~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g--~~~~~~i~~fl~~~~ 236 (554)
..+++++|+.| |||+.+-.||+...-..| ..+.+.+..++.+.+
T Consensus 164 r~l~~rlg~~G-fPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 164 RRLMQRLGAAG-FPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRL 209 (212)
T ss_pred HHHHHHhccCC-CCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHH
Confidence 57899999998 999999999987554444 345688888887654
No 375
>PF06363 Picorna_P3A: Picornaviridae P3A protein; InterPro: IPR009419 The viral polyprotein of parechoviruses contains: coat protein VP0 (P1AB); coat protein VP3 (P1C); coat protein VP1 (P1D); picornain 2A (3.4.22.29 from EC, core protein P2A); core protein P2B; core protein P2C; core protein P3A; genome-linked protein VPg (P3B); picornain 3C (3.4.22.28 from EC, MEROPS peptidase subfamily 3CF: parechovirus picornain 3C (P3C))[]. This entry consists of the parechovirus P3A protein. P3A has been identified as a genome-linked protein (VPg), which is involved in replication [].; GO: 0019012 virion
Probab=68.13 E-value=42 Score=27.15 Aligned_cols=75 Identities=5% Similarity=0.061 Sum_probs=50.3
Q ss_pred chhhHHHHHHHHhhhcCCCCCcccccc-ccchhhhhhhHHHHHHHHH-HHHHHHHHhhhcccchhhhhhHHHHHHHHH
Q psy16770 461 NTTKDRLDAGLRSLVNDPYNNLLYDTA-LKEISDEYIQSLGVRIFNR-IFMHIEMAQQSLSRQHILPAVSLIFTVIII 536 (554)
Q Consensus 461 ~~t~e~l~~fl~~~~~g~~~~~~~~~~-lp~~~de~~~~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i 536 (554)
+.+...|.+.+++++.-+..|+.=-+. .|...- -+.--+..|+.. +-++.++...+-.|.-+..++|...++|.+
T Consensus 11 ~~e~s~LIEqiE~~i~P~~S~F~CFa~~~~~~~~-~a~~kv~~W~~~k~k~~~~FV~RNk~W~T~~S~~tS~isIL~L 87 (100)
T PF06363_consen 11 NIEMSELIEQIEAFIEPRPSVFKCFASKVPTKIK-TACDKVKSWVKNKMKSMLSFVERNKAWFTVVSAVTSFISILLL 87 (100)
T ss_pred hhhHHHHHHHHHHHHCCCCChHHHHHhcccchhH-HHHHHHHHHHHHHHHHHHHHHHHcchHhhHHHHHHHHHHHHHH
Confidence 356678889999999888876554443 333222 344455566666 888999999999988776666655555444
No 376
>KOG0724|consensus
Probab=67.78 E-value=4.9 Score=41.43 Aligned_cols=55 Identities=31% Similarity=0.517 Sum_probs=44.3
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCC-----ChhHHHHHHHHHHHHHHcCChHHHHhhhccC
Q psy16770 30 TASLQEIRKNYKRLVVEWHPDKNN-----DPTAQEKFLQLTEAYNILSDAERRKQYDLFG 84 (554)
Q Consensus 30 ~a~~~~ik~ay~~l~~~~hPd~~~-----~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~ 84 (554)
.++..+|+.+|+..+...||++.. .-...+.+.+|.+||.+|++..+|...|..-
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~ 62 (335)
T KOG0724|consen 3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWD 62 (335)
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhh
Confidence 467788999999999999999874 1234677999999999999976666666644
No 377
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=67.76 E-value=43 Score=29.05 Aligned_cols=64 Identities=11% Similarity=-0.055 Sum_probs=38.4
Q ss_pred cCCceEEEEEecCCchhHHHHHH-h-----h--ccCCceEEEEEEccCCCChhHHhH--------hCCCCCCceEEEEeC
Q psy16770 258 EDNKVHALLFQRSLPVRLRYLIN-A-----F--KHRTTIVFGVIVYDQEDSSSVFQR--------FKVPGDKDSLLIFKE 321 (554)
Q Consensus 258 ~~~~~~v~~f~~~~~~~~~~~~~-a-----~--~~~~~v~Fg~v~~~~~~~~~l~~k--------~~i~~~~Ptlvvfk~ 321 (554)
+.++++++.|...--+..+.... . . .+.+++.+..+|.+ ..+++.++ |++.+ .|+++++.+
T Consensus 13 ~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~--~~~~~~~~~~~~~~~~~~~~G-~Pt~vfl~~ 89 (124)
T cd02955 13 REDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDRE--ERPDVDKIYMNAAQAMTGQGG-WPLNVFLTP 89 (124)
T ss_pred HcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCC--cCcHHHHHHHHHHHHhcCCCC-CCEEEEECC
Confidence 46888888885544333333321 1 1 22345556666654 45666543 57776 999999987
Q ss_pred CCC
Q psy16770 322 DKD 324 (554)
Q Consensus 322 ~~~ 324 (554)
+.+
T Consensus 90 ~G~ 92 (124)
T cd02955 90 DLK 92 (124)
T ss_pred CCC
Confidence 655
No 378
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=65.93 E-value=34 Score=26.55 Aligned_cols=70 Identities=14% Similarity=0.198 Sum_probs=38.2
Q ss_pred EEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCc----HHHHHHhCCcCCCCcceeccCCeEEEEeCCcccHHH
Q psy16770 152 ILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE----QGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQK 227 (554)
Q Consensus 152 V~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~----~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~~ 227 (554)
..++.++|+.|.+..-..+ ..|+.+-.++.... .++.+.-+-. ++|+++.-.+|. ..+ ....
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~-------~~gi~y~~~~v~~~~~~~~~~~~~~p~~-~vP~l~~~~~~~-~l~-----es~~ 68 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLT-------ELELDVILYPCPKGSPKRDKFLEKGGKV-QVPYLVDPNTGV-QMF-----ESAD 68 (77)
T ss_pred eEecCCCCchHHHHHHHHH-------HcCCcEEEEECCCChHHHHHHHHhCCCC-cccEEEeCCCCe-EEE-----cHHH
Confidence 4567789999986543322 22455555565442 2332222333 599986432342 211 3478
Q ss_pred HHHHHHHh
Q psy16770 228 MVEFFRLK 235 (554)
Q Consensus 228 i~~fl~~~ 235 (554)
|.+|+.+.
T Consensus 69 I~~yL~~~ 76 (77)
T cd03041 69 IVKYLFKT 76 (77)
T ss_pred HHHHHHHh
Confidence 88888764
No 379
>KOG2507|consensus
Probab=65.60 E-value=18 Score=37.67 Aligned_cols=96 Identities=5% Similarity=-0.050 Sum_probs=68.7
Q ss_pred ccCCCCCCcEEEEEEcccccccccch--HHHHHHHHHhCCCCEEEEEEEecC--cHHHHHHhCCcCCCCcceec-cCCeE
Q psy16770 141 YIPKSYTTPHLILFYSDWCFACLQVE--PIFKKLMDELSPLGVGFFTVHVHN--EQGLARRLGVGSQLPQIALL-TDGRT 215 (554)
Q Consensus 141 v~~~~~~~~~lV~Fya~wC~~C~~l~--p~~~~~a~~l~~~~v~~~~Vd~~~--~~~l~~~~~v~~~~Pti~~~-~~g~~ 215 (554)
|...+.++.++|.|-+-......+|. -.|...........+..++|++.. ...++.-|.+.. +|++.++ .+|.+
T Consensus 12 Ia~aK~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~-vPs~ffIg~sGtp 90 (506)
T KOG2507|consen 12 IAEAKGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVS-VPSIFFIGFSGTP 90 (506)
T ss_pred HHHhhcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhccccc-ccceeeecCCCce
Confidence 33335677888888888888888887 344444333332236667777665 356677888887 9999888 67899
Q ss_pred EEEeCCcccHHHHHHHHHHhCC
Q psy16770 216 SFFKEPSFSVQKMVEFFRLKLP 237 (554)
Q Consensus 216 ~~y~~g~~~~~~i~~fl~~~~~ 237 (554)
.....|..++++|..-|.+..-
T Consensus 91 Levitg~v~adeL~~~i~Kv~~ 112 (506)
T KOG2507|consen 91 LEVITGFVTADELASSIEKVWL 112 (506)
T ss_pred eEEeeccccHHHHHHHHHHHHH
Confidence 8888888899999988877643
No 380
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=65.03 E-value=75 Score=26.10 Aligned_cols=81 Identities=11% Similarity=0.042 Sum_probs=47.9
Q ss_pred hhhhcCCCCceEEEEEcCCCCcchhHHHHHHHHHhhccCCCCceEEEEEecccchHHHHhhCCCCCCccccceEEEEEEe
Q psy16770 360 MLDAVCPVKKLCVVLFSEDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPEDSSEISLHIAAMWRM 439 (554)
Q Consensus 360 ~~~~~c~~~~lcvvl~~~~~~~~~~~~~~l~~~a~~~~~~~~~v~F~~vd~~~q~~~~~~~~~~~~~~~~~~~~~~v~~~ 439 (554)
+|+.+ .++..+++++.+++.+++..+-++++|.. .+++++...+... ..|.+.++...
T Consensus 13 ~f~~l--~~pV~l~~f~~~~~~~~e~~~ll~e~a~l----SdkI~~~~~~~~~----------------~~P~~~i~~~~ 70 (94)
T cd02974 13 YLERL--ENPVELVASLDDSEKSAELLELLEEIASL----SDKITLEEDNDDE----------------RKPSFSINRPG 70 (94)
T ss_pred HHHhC--CCCEEEEEEeCCCcchHHHHHHHHHHHHh----CCceEEEEecCCC----------------CCCEEEEecCC
Confidence 44443 34677778876656777777788888876 3456664433211 01444443222
Q ss_pred cCCCeeEEEecCCCCCcccccchhhHHHHHHHHhh
Q psy16770 440 DYKKIKYGWLLGDAVDDWKDYNTTKDRLDAGLRSL 474 (554)
Q Consensus 440 ~~~~~ky~~~~~~~~~~~~~~~~t~e~l~~fl~~~ 474 (554)
+..+.+|.-++++ +...+||..+
T Consensus 71 ~~~gIrF~GiP~G------------hEf~Slilai 93 (94)
T cd02974 71 EDTGIRFAGIPMG------------HEFTSLVLAL 93 (94)
T ss_pred CcccEEEEecCCc------------hhHHHHHHHh
Confidence 2346899877765 5677777665
No 381
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=64.31 E-value=29 Score=29.21 Aligned_cols=90 Identities=12% Similarity=0.157 Sum_probs=54.9
Q ss_pred cccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCC
Q psy16770 134 HWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDG 213 (554)
Q Consensus 134 ~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g 213 (554)
.++.++.+. ..+.+.+|=|+..--+ .....|.++|..++. .+.|+... +..+..++++. .|.+++|+..
T Consensus 8 ~~ele~f~~--~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rd-d~~F~~t~---~~~~~~~~~~~--~~~vvl~rp~ 76 (107)
T cd03068 8 LKQVQEFLR--DGDDVIIIGVFSGEED---PAYQLYQDAANSLRE-DYKFHHTF---DSEIFKSLKVS--PGQLVVFQPE 76 (107)
T ss_pred HHHHHHHHh--cCCCEEEEEEECCCCC---HHHHHHHHHHHhccc-CCEEEEEC---hHHHHHhcCCC--CCceEEECcH
Confidence 344555542 2225666666655433 356678999999975 37775443 45778889886 4888888432
Q ss_pred --------eEEEEeCC-cccHHHHHHHHHH
Q psy16770 214 --------RTSFFKEP-SFSVQKMVEFFRL 234 (554)
Q Consensus 214 --------~~~~y~~g-~~~~~~i~~fl~~ 234 (554)
....|.|. ..+.++|..|++.
T Consensus 77 ~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 77 KFQSKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred HHhhhcCcceeeeeccccchHHHHHHHHhc
Confidence 23456544 2233449999875
No 382
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=64.21 E-value=37 Score=29.03 Aligned_cols=75 Identities=13% Similarity=0.181 Sum_probs=40.8
Q ss_pred HHHHHhhhhcCCceEEEEEecCCchhHHHHHHhh-----ccCCceEEEEEEccCCCChhHHhHhCCCC-CCceEEEEeCC
Q psy16770 249 VDAFLDNWREDNKVHALLFQRSLPVRLRYLINAF-----KHRTTIVFGVIVYDQEDSSSVFQRFKVPG-DKDSLLIFKED 322 (554)
Q Consensus 249 ~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~a~-----~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~-~~Ptlvvfk~~ 322 (554)
+++.++.....++++++.|...--++.+.....+ .......|..++.+.. .....++|++.+ ..||+++|.++
T Consensus 8 ~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~-~~~~~~~~~~~g~~vPt~~f~~~~ 86 (117)
T cd02959 8 LEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDD-EEPKDEEFSPDGGYIPRILFLDPS 86 (117)
T ss_pred HHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCC-CCchhhhcccCCCccceEEEECCC
Confidence 4444443334678888877544333322222111 1112345666766632 234567888874 48999999764
Q ss_pred CC
Q psy16770 323 KD 324 (554)
Q Consensus 323 ~~ 324 (554)
++
T Consensus 87 Gk 88 (117)
T cd02959 87 GD 88 (117)
T ss_pred CC
Confidence 44
No 383
>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.
Probab=64.12 E-value=27 Score=28.64 Aligned_cols=70 Identities=11% Similarity=0.083 Sum_probs=44.6
Q ss_pred CCceEEEEEecCCchhHHHHHHhh-ccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCCCCh
Q psy16770 259 DNKVHALLFQRSLPVRLRYLINAF-KHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPV 337 (554)
Q Consensus 259 ~~~~~v~~f~~~~~~~~~~~~~a~-~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~ 337 (554)
..+.++++|.++.++++..+..++ .+++++.|-..-- +.. ....-. .+.+++|++.. ......+.|.++.
T Consensus 16 ~kr~iIgYF~~~~~~eY~~f~kvA~~lr~dC~F~v~~G-----~~~-~~~~~~--~~~~i~frp~~-~~~~~~y~G~~tn 86 (91)
T cd03070 16 SKRNIIGYFESKDSDEYDNFRKVANILRDDCSFLVGFG-----DVT-KPERPP--GDNIIYFPPGH-NAPDMVYLGSLTN 86 (91)
T ss_pred CCceEEEEEcCCCChhHHHHHHHHHHHhhcCeEEEEec-----ccc-ccccCC--CCCeEEECCCC-CCCceEEccCCCC
Confidence 466778899898989888887766 7889998866621 211 111122 35677788753 2223677777753
No 384
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=61.86 E-value=27 Score=34.80 Aligned_cols=44 Identities=14% Similarity=0.176 Sum_probs=32.3
Q ss_pred ChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCCCChhHHHhHHh
Q psy16770 300 SSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITD 345 (554)
Q Consensus 300 ~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~ 345 (554)
+..++++|+|.. .|++++++++.... ..+..|.++.+.|.+.|.
T Consensus 218 d~~la~~~gV~~-vPtl~Lv~~~~~~v-~~v~~G~~s~~eL~~~i~ 261 (271)
T TIGR02740 218 DAGQAQQLKIRT-VPAVFLADPDPNQF-TPIGFGVMSADELVDRIL 261 (271)
T ss_pred CHHHHHHcCCCc-CCeEEEEECCCCEE-EEEEeCCCCHHHHHHHHH
Confidence 356899999997 99999998744332 234567788888877664
No 385
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=61.57 E-value=29 Score=28.10 Aligned_cols=33 Identities=6% Similarity=-0.056 Sum_probs=27.4
Q ss_pred ccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEE
Q psy16770 283 KHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLI 318 (554)
Q Consensus 283 ~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvv 318 (554)
...+++.|..++.+ ..++++++|+|.+ .|++++
T Consensus 39 ~~~~~i~~~~vd~~--~~~e~a~~~~V~~-vPt~vi 71 (89)
T cd03026 39 VLNPNIEHEMIDGA--LFQDEVEERGIMS-VPAIFL 71 (89)
T ss_pred HHCCCceEEEEEhH--hCHHHHHHcCCcc-CCEEEE
Confidence 33567999999877 6788999999997 999975
No 386
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=60.02 E-value=24 Score=34.28 Aligned_cols=41 Identities=24% Similarity=0.385 Sum_probs=31.5
Q ss_pred CCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEE
Q psy16770 145 SYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV 186 (554)
Q Consensus 145 ~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~V 186 (554)
+.++|.++.|-|=.|++=..-.+.|+++++++.+. +.|..|
T Consensus 100 ~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~-adFl~V 140 (237)
T PF00837_consen 100 KGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV-ADFLIV 140 (237)
T ss_pred cCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh-hheehh
Confidence 46889999999999998888788888888887652 344433
No 387
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=59.31 E-value=45 Score=28.16 Aligned_cols=39 Identities=13% Similarity=0.108 Sum_probs=28.1
Q ss_pred CChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCCCChhHHH
Q psy16770 299 DSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQ 341 (554)
Q Consensus 299 ~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~ 341 (554)
.+.+++++|+|.+ .|+++++.++. ...+..|-.+...|.
T Consensus 81 ~~~~~~~~~~i~~-~P~~~vid~~g---i~~~~~g~~~~~~~~ 119 (123)
T cd03011 81 PDGVISARWGVSV-TPAIVIVDPGG---IVFVTTGVTSEWGLR 119 (123)
T ss_pred CCcHHHHhCCCCc-ccEEEEEcCCC---eEEEEeccCCHHHHH
Confidence 4568999999997 99999998654 234555666666554
No 388
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=58.90 E-value=6.1 Score=33.06 Aligned_cols=32 Identities=6% Similarity=0.170 Sum_probs=23.4
Q ss_pred EEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC
Q psy16770 152 ILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN 190 (554)
Q Consensus 152 V~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~ 190 (554)
..|+.|+|+.|++....+++ .|+.+-.+|..+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~ 33 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEE-------HGIEYEFIDYLK 33 (105)
T ss_pred EEEECCCCHHHHHHHHHHHH-------cCCCcEEEeecc
Confidence 46889999999886654443 367777788765
No 389
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=58.41 E-value=17 Score=32.62 Aligned_cols=59 Identities=27% Similarity=0.488 Sum_probs=37.8
Q ss_pred EEEEEcc------cccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHH----HHhCC----cCCCCcceeccCCeEE
Q psy16770 151 LILFYSD------WCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA----RRLGV----GSQLPQIALLTDGRTS 216 (554)
Q Consensus 151 lV~Fya~------wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~----~~~~v----~~~~Pti~~~~~g~~~ 216 (554)
+|.|.++ +|++|+++...++ ..+|.+-.+|.+.+++.. +..+. .. +|.+ |.+|+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~-------~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~t-vPqV--FI~G~-- 69 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILE-------SFRVKFDERDVSMDSGFREELRELLGAELKAVS-LPRV--FVDGR-- 69 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHH-------HCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCC-CCEE--EECCE--
Confidence 4556677 8999987665554 346888999998765443 44444 33 6654 45663
Q ss_pred EEeCCc
Q psy16770 217 FFKEPS 222 (554)
Q Consensus 217 ~y~~g~ 222 (554)
+.||.
T Consensus 70 -~IGG~ 74 (147)
T cd03031 70 -YLGGA 74 (147)
T ss_pred -EEecH
Confidence 55664
No 390
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=54.36 E-value=41 Score=26.05 Aligned_cols=44 Identities=16% Similarity=0.141 Sum_probs=30.4
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHH
Q psy16770 19 LDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFL 62 (554)
Q Consensus 19 ~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~ 62 (554)
+|--+++|++|-|+..||+.|-++.+++..--..|+....+.|.
T Consensus 3 RNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS~~n~~AFe 46 (88)
T COG5552 3 RNIKELFNFDPPATPVEVRDAALQFVRKLSGTTHPSAANAEAFE 46 (88)
T ss_pred cchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcchhhHHHHH
Confidence 34557889999999999999998888877433333323334443
No 391
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=54.23 E-value=25 Score=29.97 Aligned_cols=46 Identities=22% Similarity=0.333 Sum_probs=32.6
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCC-Chh----HHHHHHHHHHHHHHcCCh
Q psy16770 29 RTASLQEIRKNYKRLVVEWHPDKNN-DPT----AQEKFLQLTEAYNILSDA 74 (554)
Q Consensus 29 ~~a~~~~ik~ay~~l~~~~hPd~~~-~~~----~~~~~~~i~~Ay~~L~~~ 74 (554)
+..+..++|+|.|.+-++.|||... .|. .++-++.|+.-.+.|..+
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~ 54 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKR 54 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhcc
Confidence 4556789999999999999999764 333 234466666666666543
No 392
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=54.17 E-value=13 Score=31.73 Aligned_cols=34 Identities=12% Similarity=0.336 Sum_probs=25.1
Q ss_pred EEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcH
Q psy16770 152 ILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQ 192 (554)
Q Consensus 152 V~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~ 192 (554)
..|+.++|+.|++....+++ .|+.+-.+|..+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~ 35 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA-------NGIEYQFIDIGEDG 35 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------cCCceEEEecCCCh
Confidence 35889999999887655553 36788888887654
No 393
>KOG2792|consensus
Probab=53.82 E-value=49 Score=32.47 Aligned_cols=45 Identities=11% Similarity=0.222 Sum_probs=31.8
Q ss_pred HHHHHhCCcCCC-C-----------cceec---cCCeEEEEeCCcccHHHHHHHHHHhCC
Q psy16770 193 GLARRLGVGSQL-P-----------QIALL---TDGRTSFFKEPSFSVQKMVEFFRLKLP 237 (554)
Q Consensus 193 ~l~~~~~v~~~~-P-----------ti~~~---~~g~~~~y~~g~~~~~~i~~fl~~~~~ 237 (554)
.+|++|.|--+- | ||.+| .+|+.+.|+|..++++++.+-|.+++.
T Consensus 217 ~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v~ 276 (280)
T KOG2792|consen 217 QVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHVA 276 (280)
T ss_pred HHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHHH
Confidence 677888764201 1 24444 678899999988999999888877643
No 394
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=53.74 E-value=69 Score=25.99 Aligned_cols=61 Identities=11% Similarity=0.081 Sum_probs=46.3
Q ss_pred cEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceec
Q psy16770 149 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALL 210 (554)
Q Consensus 149 ~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~ 210 (554)
..|=.|.|..-+.+.+......+..++..+..+.+-.||..+++.+++.++|-. .||++=.
T Consensus 4 ~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvA-TPtLIK~ 64 (87)
T TIGR02654 4 YVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILA-TPTLSKI 64 (87)
T ss_pred EEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEE-ecHHhhc
Confidence 455567777777777766666666554433249999999999999999999996 9997544
No 395
>KOG0908|consensus
Probab=53.66 E-value=69 Score=31.35 Aligned_cols=55 Identities=11% Similarity=0.128 Sum_probs=37.7
Q ss_pred CceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770 286 TTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNN 347 (554)
Q Consensus 286 ~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~ 347 (554)
....|..||++ .-...+..+||+. .||.++|+++... -....-+...|++-+..+
T Consensus 51 p~aVFlkVdVd--~c~~taa~~gV~a-mPTFiff~ng~ki----d~~qGAd~~gLe~kv~~~ 105 (288)
T KOG0908|consen 51 PGAVFLKVDVD--ECRGTAATNGVNA-MPTFIFFRNGVKI----DQIQGADASGLEEKVAKY 105 (288)
T ss_pred cccEEEEEeHH--HhhchhhhcCccc-CceEEEEecCeEe----eeecCCCHHHHHHHHHHH
Confidence 56778899887 6778889999997 9999999875431 122233445555555443
No 396
>PRK09301 circadian clock protein KaiB; Provisional
Probab=53.37 E-value=77 Score=26.54 Aligned_cols=80 Identities=13% Similarity=0.032 Sum_probs=55.1
Q ss_pred CcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCcccHHH
Q psy16770 148 TPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQK 227 (554)
Q Consensus 148 ~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~~ 227 (554)
..+|-.|.+..-+.+++......++-+..-+..+.+-.||..+++.+++.++|-. .||++=...+-...-.|+.-+.+.
T Consensus 6 ~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvA-TPTLIK~~P~P~rriiGDlsd~~k 84 (103)
T PRK09301 6 TYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILA-TPTLAKILPPPVRKIIGDLSDREK 84 (103)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEE-ecHHhhcCCCCcceeecccccHHH
Confidence 4667778888888887777677776654433249999999999999999999996 999654433322333454433333
Q ss_pred H
Q psy16770 228 M 228 (554)
Q Consensus 228 i 228 (554)
+
T Consensus 85 V 85 (103)
T PRK09301 85 V 85 (103)
T ss_pred H
Confidence 3
No 397
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=52.74 E-value=27 Score=26.43 Aligned_cols=70 Identities=14% Similarity=0.225 Sum_probs=38.6
Q ss_pred EEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCc-HHHHHHhCCcCCCCcceeccCCeEEEEeCCcccHHHHHH
Q psy16770 152 ILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE-QGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVE 230 (554)
Q Consensus 152 V~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~-~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~~i~~ 230 (554)
..|+.++|+.|.+..-..+ ..+..+....+|.... +.+.+..... ++|++. .+|.. . .....|..
T Consensus 2 ~ly~~~~~~~~~~v~~~l~-----~~gi~~~~~~v~~~~~~~~~~~~~p~~-~vP~l~--~~~~~-l-----~es~aI~~ 67 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLA-----EKGVSVEIIDVDPDNPPEDLAELNPYG-TVPTLV--DRDLV-L-----YESRIIME 67 (73)
T ss_pred EEEECCCChhHHHHHHHHH-----HcCCccEEEEcCCCCCCHHHHhhCCCC-CCCEEE--ECCEE-E-----EcHHHHHH
Confidence 4577899999988654332 2333344445554433 3444433444 589774 23421 1 23477888
Q ss_pred HHHHh
Q psy16770 231 FFRLK 235 (554)
Q Consensus 231 fl~~~ 235 (554)
|+.+.
T Consensus 68 yL~~~ 72 (73)
T cd03059 68 YLDER 72 (73)
T ss_pred HHHhh
Confidence 87653
No 398
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=51.98 E-value=50 Score=28.40 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=18.6
Q ss_pred hhHHhHhCCCCCCceEEEEeCCCC
Q psy16770 301 SSVFQRFKVPGDKDSLLIFKEDKD 324 (554)
Q Consensus 301 ~~l~~k~~i~~~~Ptlvvfk~~~~ 324 (554)
..+++.|++.. .|+++++.++.+
T Consensus 89 ~~~~~~~~v~~-~P~~~lid~~G~ 111 (131)
T cd03009 89 SRLNRTFKIEG-IPTLIILDADGE 111 (131)
T ss_pred HHHHHHcCCCC-CCEEEEECCCCC
Confidence 46788999997 999999976444
No 399
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=51.15 E-value=28 Score=38.91 Aligned_cols=80 Identities=16% Similarity=0.197 Sum_probs=57.5
Q ss_pred ccccccccccCCCCCCcEEEEEEcccccccccchHH-H--HHHHHHhCCCCEEEEEEEecCcHHH-------HHHhCCcC
Q psy16770 133 THWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPI-F--KKLMDELSPLGVGFFTVHVHNEQGL-------ARRLGVGS 202 (554)
Q Consensus 133 t~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~-~--~~~a~~l~~~~v~~~~Vd~~~~~~l-------~~~~~v~~ 202 (554)
+.+-|.+.- ..++|+++-.-..||.=|.-|+.+ | .++|..++. .+.-+|||-++-+++ |+....+|
T Consensus 32 ~~eAf~~A~---~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~-~FV~IKVDREERPDvD~~Ym~~~q~~tG~G 107 (667)
T COG1331 32 GEEAFAKAK---EEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE-NFVPVKVDREERPDVDSLYMNASQAITGQG 107 (667)
T ss_pred CHHHHHHHH---HhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh-CceeeeEChhhccCHHHHHHHHHHHhccCC
Confidence 345565544 578999999999999999988653 3 467888876 488889998886654 44555555
Q ss_pred CCCcceec-cCCeEE
Q psy16770 203 QLPQIALL-TDGRTS 216 (554)
Q Consensus 203 ~~Pti~~~-~~g~~~ 216 (554)
+.|--++. .+|++.
T Consensus 108 GWPLtVfLTPd~kPF 122 (667)
T COG1331 108 GWPLTVFLTPDGKPF 122 (667)
T ss_pred CCceeEEECCCCcee
Confidence 69965555 777763
No 400
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=51.05 E-value=16 Score=32.06 Aligned_cols=35 Identities=17% Similarity=0.379 Sum_probs=24.4
Q ss_pred EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcH
Q psy16770 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQ 192 (554)
Q Consensus 151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~ 192 (554)
+..|+.|+|+.|++....++ ..|+.+-.+|..+++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~-------~~gi~~~~idi~~~~ 36 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLE-------EHDIPFTERNIFSSP 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHH-------HcCCCcEEeeccCCh
Confidence 45688999999987554333 446778788876644
No 401
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=50.54 E-value=20 Score=24.70 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccccc
Q psy16770 526 AVSLIFTVIIIVVLAMIMNHYMKLEEE 552 (554)
Q Consensus 526 ~~s~~~~~~~i~~~~~~~~~~~~~~~~ 552 (554)
++|++.++..|..++|++.||.++..|
T Consensus 13 L~Sl~vI~~~igm~~~~~~~F~~k~~~ 39 (42)
T PF11346_consen 13 LMSLIVIVFTIGMGVFFIRYFIRKMKE 39 (42)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 467777777777778888899876654
No 402
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=49.74 E-value=1.6e+02 Score=26.51 Aligned_cols=42 Identities=7% Similarity=0.102 Sum_probs=27.2
Q ss_pred ceEEEEEc-CCCCcchhHHHHHHHHHhhccCCCCceEEEEEeccc
Q psy16770 369 KLCVVLFS-EDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEK 412 (554)
Q Consensus 369 ~lcvvl~~-~~~~~~~~~~~~l~~~a~~~~~~~~~v~F~~vd~~~ 412 (554)
+..+|.|. .....+......|.+++++ +.+..+.++-++.+.
T Consensus 62 k~~~l~f~a~~C~~C~~~~~~l~~~~~~--~~~~~~~vi~i~~d~ 104 (173)
T PRK03147 62 KGVFLNFWGTWCKPCEKEMPYMNELYPK--YKEKGVEIIAVNVDE 104 (173)
T ss_pred CEEEEEEECCcCHHHHHHHHHHHHHHHH--hhcCCeEEEEEEcCC
Confidence 44444444 4445556667788888887 765567788887754
No 403
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=49.05 E-value=22 Score=27.75 Aligned_cols=56 Identities=21% Similarity=0.360 Sum_probs=34.2
Q ss_pred EEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcH----------------HHHHHhCCcCCCCcceeccCCeE
Q psy16770 152 ILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQ----------------GLARRLGVGSQLPQIALLTDGRT 215 (554)
Q Consensus 152 V~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~----------------~l~~~~~v~~~~Pti~~~~~g~~ 215 (554)
++|+|.-|+.|..+...++ ..++.+-.|+.+... +=++..|--| .|++.. .+|+.
T Consensus 5 ~lfgsn~Cpdca~a~eyl~-------rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiG-IPall~-~d~~v 75 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLE-------RLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIG-IPALLT-DDGKV 75 (85)
T ss_pred eeeccccCcchHHHHHHHH-------HcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCccc-ceEEEe-CCCcE
Confidence 6799999999965443333 335677777776532 2234445555 887765 55555
Q ss_pred E
Q psy16770 216 S 216 (554)
Q Consensus 216 ~ 216 (554)
+
T Consensus 76 V 76 (85)
T COG4545 76 V 76 (85)
T ss_pred E
Confidence 4
No 404
>PHA02125 thioredoxin-like protein
Probab=48.81 E-value=38 Score=26.17 Aligned_cols=26 Identities=8% Similarity=0.180 Sum_probs=20.2
Q ss_pred EEEEEEccCCCChhHHhHhCCCCCCceEE
Q psy16770 289 VFGVIVYDQEDSSSVFQRFKVPGDKDSLL 317 (554)
Q Consensus 289 ~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlv 317 (554)
.+.-++.+ ...+++++|+|.+ .||++
T Consensus 26 ~~~~vd~~--~~~~l~~~~~v~~-~PT~~ 51 (75)
T PHA02125 26 TYVDVDTD--EGVELTAKHHIRS-LPTLV 51 (75)
T ss_pred eEEeeeCC--CCHHHHHHcCCce-eCeEE
Confidence 35555544 6789999999997 99988
No 405
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=46.52 E-value=38 Score=21.11 Aligned_cols=24 Identities=8% Similarity=0.313 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHhhccccc
Q psy16770 528 SLIFTVIIIVVLAMIMNHYMKLEE 551 (554)
Q Consensus 528 s~~~~~~~i~~~~~~~~~~~~~~~ 551 (554)
-+.+.+++++..||++.++...|+
T Consensus 5 vi~g~llv~lLl~YLvYAL~naE~ 28 (29)
T PRK14750 5 IVCGALLVLLLLGYLVYALFNAED 28 (29)
T ss_pred HHHHHHHHHHHHHHHHHHHcCccc
Confidence 356777888889999998876553
No 406
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=45.75 E-value=37 Score=25.65 Aligned_cols=68 Identities=22% Similarity=0.364 Sum_probs=35.1
Q ss_pred EEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCcccHHHHHHHH
Q psy16770 153 LFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFF 232 (554)
Q Consensus 153 ~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~~i~~fl 232 (554)
.++.++|++|.+..-.+. .++..+....++-......-+..+-. .+|++.. .+|..+ .....|.+|+
T Consensus 3 Ly~~~~~p~~~rvr~~L~-----~~gl~~~~~~~~~~~~~~~~~~~~~~-~vP~L~~-~~~~~l------~es~aI~~yL 69 (71)
T cd03037 3 LYIYEHCPFCVKARMIAG-----LKNIPVEQIILQNDDEATPIRMIGAK-QVPILEK-DDGSFM------AESLDIVAFI 69 (71)
T ss_pred eEecCCCcHhHHHHHHHH-----HcCCCeEEEECCCCchHHHHHhcCCC-ccCEEEe-CCCeEe------ehHHHHHHHH
Confidence 467889999987654433 23333344444433322222333334 4888743 334321 1336777776
Q ss_pred H
Q psy16770 233 R 233 (554)
Q Consensus 233 ~ 233 (554)
.
T Consensus 70 ~ 70 (71)
T cd03037 70 D 70 (71)
T ss_pred h
Confidence 4
No 407
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=45.32 E-value=45 Score=25.01 Aligned_cols=52 Identities=17% Similarity=0.186 Sum_probs=30.2
Q ss_pred EEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC----cHHHHHHhCCcCCCCccee
Q psy16770 152 ILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN----EQGLARRLGVGSQLPQIAL 209 (554)
Q Consensus 152 V~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~----~~~l~~~~~v~~~~Pti~~ 209 (554)
..|+.++|+.|.+..-.+++. +..+....+|... .+++.+..... .+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~-----~l~~~~~~v~~~~~~~~~~~~~~~~p~~-~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEK-----GIDVPLVTVDLAAGEQRSPEFLAKNPAG-TVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHc-----CCCceEEEeecccCccCCHHHHhhCCCC-CCCEEEe
Confidence 357789999999876554432 3334455555322 23444444444 4899865
No 408
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=45.02 E-value=14 Score=36.46 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=21.7
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHH
Q psy16770 521 QHILPAVSLIFTVIIIVVLAMIMN 544 (554)
Q Consensus 521 ~~~~~~~s~~~~~~~i~~~~~~~~ 544 (554)
...||++-+|+.++||+|+||+|.
T Consensus 275 ~~l~piil~IG~vl~i~~Ig~~if 298 (305)
T PF04639_consen 275 DSLLPIILIIGGVLLIVFIGYFIF 298 (305)
T ss_pred hhhhHHHHHHHHHHHHHHhhheee
Confidence 668999999999999999999873
No 409
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=45.00 E-value=69 Score=25.08 Aligned_cols=53 Identities=17% Similarity=0.073 Sum_probs=36.8
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHH----HHHHHHHHcC
Q psy16770 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFL----QLTEAYNILS 72 (554)
Q Consensus 20 d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~----~i~~Ay~~L~ 72 (554)
|--.+-|+.|-++.+||+.|-+|.+++..=-..++....+.|. +|..|-.-|.
T Consensus 4 nI~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps~an~eaF~~AV~eva~at~~LL 60 (78)
T PF10041_consen 4 NIKTLRNFEPPATDEEIRAAALQYVRKVSGFRKPSAANAEAFDRAVAEVAAATRRLL 60 (78)
T ss_pred chhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 3445678899999999999999999998766555544444443 4555544443
No 410
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=44.01 E-value=18 Score=30.73 Aligned_cols=51 Identities=18% Similarity=0.364 Sum_probs=31.9
Q ss_pred EEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcH----HHHHHhCCcCCCCcceec
Q psy16770 152 ILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQ----GLARRLGVGSQLPQIALL 210 (554)
Q Consensus 152 V~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~----~l~~~~~v~~~~Pti~~~ 210 (554)
..|..++|+.|++....++ ..|+.+-.+|..+++ ++.+-.+-.+ .|...++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~-------~~~i~~~~idi~~~~~~~~el~~~~~~~~-~~~~~l~ 56 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLD-------EHGVDYTAIDIVEEPPSKEELKKWLEKSG-LPLKKFF 56 (111)
T ss_pred EEEECCCCHHHHHHHHHHH-------HcCCceEEecccCCcccHHHHHHHHHHcC-CCHHHHH
Confidence 3588999999987665444 346778888876543 3333334444 5555555
No 411
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=43.02 E-value=25 Score=32.51 Aligned_cols=33 Identities=30% Similarity=0.543 Sum_probs=25.0
Q ss_pred EEEcccccccccchHHHHHHHHHhCCCCEEEEEE
Q psy16770 153 LFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV 186 (554)
Q Consensus 153 ~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~V 186 (554)
.|..|.|+.|-..+|.+.++..++... +.+--|
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~-i~~~~i 34 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNK-IEFRFI 34 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TT-EEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCc-EEEEEE
Confidence 588999999999999999999999863 555444
No 412
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=42.99 E-value=17 Score=30.53 Aligned_cols=33 Identities=12% Similarity=0.190 Sum_probs=23.0
Q ss_pred EEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCc
Q psy16770 152 ILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE 191 (554)
Q Consensus 152 V~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~ 191 (554)
..|+.|+|+.|++....++ ..|+.+-.+|..++
T Consensus 2 ~iy~~~~C~~crka~~~L~-------~~~i~~~~~di~~~ 34 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLE-------ARGVAYTFHDYRKD 34 (105)
T ss_pred EEEeCCCCHHHHHHHHHHH-------HcCCCeEEEecccC
Confidence 4688999999987654444 33567777776654
No 413
>PRK14748 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=42.60 E-value=45 Score=20.78 Aligned_cols=26 Identities=12% Similarity=0.253 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhccccc
Q psy16770 526 AVSLIFTVIIIVVLAMIMNHYMKLEE 551 (554)
Q Consensus 526 ~~s~~~~~~~i~~~~~~~~~~~~~~~ 551 (554)
+-.+++.++..+..||++.++...|+
T Consensus 3 ~~vi~G~ilv~lLlgYLvyALi~aE~ 28 (29)
T PRK14748 3 AGVITGVLLVFLLLGYLVYALINAEA 28 (29)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 34567888888899999998876553
No 414
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=41.38 E-value=12 Score=29.97 Aligned_cols=55 Identities=11% Similarity=0.034 Sum_probs=40.9
Q ss_pred EcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceec
Q psy16770 155 YSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALL 210 (554)
Q Consensus 155 ya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~ 210 (554)
-+..-+.+.+.......+.+..-+..+.+-.||..+++.+++.++|-. .||++=.
T Consensus 4 V~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivA-tPtLik~ 58 (82)
T PF07689_consen 4 VAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVA-TPTLIKE 58 (82)
T ss_dssp ESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEEC-HHHHHTT
T ss_pred ECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeee-cceEeec
Confidence 334444555666666666666444469999999999999999999996 9997643
No 415
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=41.33 E-value=36 Score=24.70 Aligned_cols=51 Identities=16% Similarity=0.189 Sum_probs=28.1
Q ss_pred EEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcH--HHHHHhCCcCCCCccee
Q psy16770 153 LFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQ--GLARRLGVGSQLPQIAL 209 (554)
Q Consensus 153 ~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~--~l~~~~~v~~~~Pti~~ 209 (554)
.|+.++|+.|.+..-.++.. +..+....++-.... .+-+..+-.. +|++..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~-----~i~~~~~~~~~~~~~~~~~~~~~~~~~-~P~l~~ 55 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEK-----GLPYELVPVDLGEGEQEEFLALNPLGK-VPVLED 55 (71)
T ss_pred EEeCCCCccHHHHHHHHHHc-----CCCcEEEEeCCCCCCCHHHHhcCCCCC-CCEEEE
Confidence 57789999998766444432 323444444433322 2334445554 887765
No 416
>KOG3171|consensus
Probab=40.40 E-value=1.3e+02 Score=28.82 Aligned_cols=103 Identities=12% Similarity=0.101 Sum_probs=59.4
Q ss_pred cccC-CcccHHHHHhhhhcCCceEEEEEecCCchh----HHHHHHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCce
Q psy16770 241 IVPL-SATNVDAFLDNWREDNKVHALLFQRSLPVR----LRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDS 315 (554)
Q Consensus 241 v~~~-t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~----~~~~~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Pt 315 (554)
|..+ +.+++-+-+.+-......+|.+|.+.-... ....-+|+. .+.++|..+.. ++-....+|..+. .|+
T Consensus 140 V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAe-yP~vKFckiks---s~~gas~~F~~n~-lP~ 214 (273)
T KOG3171|consen 140 VYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAE-YPIVKFCKIKS---SNTGASDRFSLNV-LPT 214 (273)
T ss_pred EEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhcc-CCceeEEEeee---ccccchhhhcccC-Cce
Confidence 4444 446666555442223345556675543221 112233444 57888888854 3566788999887 999
Q ss_pred EEEEeCCCCCCCcee-----ecCCCChhHHHhHHhcCCC
Q psy16770 316 LLIFKEDKDRPSASI-----TMNSIPVPTLQDITDNNPY 349 (554)
Q Consensus 316 lvvfk~~~~~~~~~i-----~~~~~~~~~l~~fi~~~~~ 349 (554)
|++|+.+.- ..+++ ...++....+..|++...+
T Consensus 215 LliYkgGeL-IgNFv~va~qlgedffa~dle~FL~e~gl 252 (273)
T KOG3171|consen 215 LLIYKGGEL-IGNFVSVAEQLGEDFFAGDLESFLNEYGL 252 (273)
T ss_pred EEEeeCCch-hHHHHHHHHHHhhhhhhhhHHHHHHHcCC
Confidence 999997432 11222 2345556678888876543
No 417
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=39.35 E-value=1.1e+02 Score=25.10 Aligned_cols=70 Identities=20% Similarity=0.206 Sum_probs=40.9
Q ss_pred ccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770 157 DWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKL 236 (554)
Q Consensus 157 ~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~~i~~fl~~~~ 236 (554)
.+|+.|++..= +-..++..+.+..||....++.-.+.+=.|++|++.- +|..+ .+...|.+|+.+..
T Consensus 20 g~cpf~~rvrl-----~L~eKgi~ye~~~vd~~~~p~~~~~~nP~g~vPvL~~--~~~~i------~eS~~I~eYLde~~ 86 (91)
T cd03061 20 GNCPFCQRLFM-----VLWLKGVVFNVTTVDMKRKPEDLKDLAPGTQPPFLLY--NGEVK------TDNNKIEEFLEETL 86 (91)
T ss_pred CCChhHHHHHH-----HHHHCCCceEEEEeCCCCCCHHHHHhCCCCCCCEEEE--CCEEe------cCHHHHHHHHHHHc
Confidence 46888877543 2333455566666776654544444443335997652 44322 23488999998876
Q ss_pred CCC
Q psy16770 237 PYK 239 (554)
Q Consensus 237 ~~~ 239 (554)
++.
T Consensus 87 ~~~ 89 (91)
T cd03061 87 CPP 89 (91)
T ss_pred cCC
Confidence 654
No 418
>PRK12559 transcriptional regulator Spx; Provisional
Probab=36.93 E-value=31 Score=30.24 Aligned_cols=34 Identities=9% Similarity=0.374 Sum_probs=23.2
Q ss_pred EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCc
Q psy16770 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE 191 (554)
Q Consensus 151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~ 191 (554)
+..|+.|+|+.|++....++ ..|+.+-.+|..++
T Consensus 2 i~iY~~~~C~~crkA~~~L~-------~~gi~~~~~di~~~ 35 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLE-------ENQIDYTEKNIVSN 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHH-------HcCCCeEEEEeeCC
Confidence 45688999999987554333 33567777776654
No 419
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=36.44 E-value=1.5e+02 Score=23.19 Aligned_cols=57 Identities=14% Similarity=0.290 Sum_probs=42.5
Q ss_pred EEEc-CCCCcchhHHHHHHHHHhhccCCCCceEEEEEecccchHHHHhhCCCCCCccccceEEEEEEe
Q psy16770 373 VLFS-EDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPEDSSEISLHIAAMWRM 439 (554)
Q Consensus 373 vl~~-~~~~~~~~~~~~l~~~a~~~~~~~~~v~F~~vd~~~q~~~~~~~~~~~~~~~~~~~~~~v~~~ 439 (554)
.+|. +.+..+....+.++++-++ +-..++.+=.||..+|++.++.. .....|.+++.
T Consensus 5 ~Lyv~g~tp~S~~ai~nl~~i~e~--~l~~~~~LeVIDv~~~P~lAe~~--------~ivAtPtLvk~ 62 (72)
T cd02978 5 RLYVAGRTPKSERALQNLKRILEE--LLGGPYELEVIDVLKQPQLAEED--------KIVATPTLVKV 62 (72)
T ss_pred EEEECCCCchHHHHHHHHHHHHHH--hcCCcEEEEEEEcccCHhHHhhC--------CEEEechhhhc
Confidence 3444 5557788888999999988 66778999999999999998854 22456666554
No 420
>PF13728 TraF: F plasmid transfer operon protein
Probab=36.23 E-value=1.1e+02 Score=29.42 Aligned_cols=41 Identities=12% Similarity=0.229 Sum_probs=30.8
Q ss_pred ChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCCCChhHHHh
Q psy16770 300 SSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQD 342 (554)
Q Consensus 300 ~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~ 342 (554)
+..++++++|.. .|++++..++..+. ..+..|-++...|.+
T Consensus 172 ~~g~~~~l~v~~-~Pal~Lv~~~~~~~-~pv~~G~~s~~~L~~ 212 (215)
T PF13728_consen 172 DPGQAKRLGVKV-TPALFLVNPNTKKW-YPVSQGFMSLDELED 212 (215)
T ss_pred CHHHHHHcCCCc-CCEEEEEECCCCeE-EEEeeecCCHHHHHH
Confidence 578999999996 99999998865432 346677777776654
No 421
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=36.16 E-value=41 Score=28.58 Aligned_cols=33 Identities=15% Similarity=0.331 Sum_probs=23.3
Q ss_pred EEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCc
Q psy16770 152 ILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE 191 (554)
Q Consensus 152 V~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~ 191 (554)
..|+.++|+.|++....+++ .|+.+-.+|..++
T Consensus 3 ~iY~~~~C~~c~ka~~~L~~-------~gi~~~~idi~~~ 35 (115)
T cd03032 3 KLYTSPSCSSCRKAKQWLEE-------HQIPFEERNLFKQ 35 (115)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------CCCceEEEecCCC
Confidence 45788999999876655543 3577777777654
No 422
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=35.64 E-value=2.3e+02 Score=22.60 Aligned_cols=42 Identities=19% Similarity=0.287 Sum_probs=27.4
Q ss_pred eEEEEEc-CCCCcchhHHHHHHHHHhhccCCCCceEEEEEecccc
Q psy16770 370 LCVVLFS-EDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQ 413 (554)
Q Consensus 370 lcvvl~~-~~~~~~~~~~~~l~~~a~~~~~~~~~v~F~~vd~~~q 413 (554)
..+|.|. .....+......+.++.++ +.+..+.++.|+.+..
T Consensus 21 ~~ll~f~~~~C~~C~~~~~~l~~~~~~--~~~~~~~~~~v~~d~~ 63 (116)
T cd02966 21 VVLVNFWASWCPPCRAEMPELEALAKE--YKDDGVEVVGVNVDDD 63 (116)
T ss_pred EEEEEeecccChhHHHHhHHHHHHHHH--hCCCCeEEEEEECCCC
Confidence 3344443 4445566677788888877 7655688888888653
No 423
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=34.52 E-value=2.7e+02 Score=25.23 Aligned_cols=44 Identities=16% Similarity=0.089 Sum_probs=30.0
Q ss_pred CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC
Q psy16770 146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN 190 (554)
Q Consensus 146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~ 190 (554)
.++++||.-.|+-|+.-.+.+ .++.+.+.+++.|+.+.-.=|..
T Consensus 24 ~GkVlLIVNtASkCGfTpQYe-gLe~Ly~ky~~~Gf~VLgFPcNQ 67 (162)
T COG0386 24 KGKVLLIVNTASKCGFTPQYE-GLEALYKKYKDKGFEVLGFPCNQ 67 (162)
T ss_pred CCcEEEEEEcccccCCcHhHH-HHHHHHHHHhhCCcEEEeccccc
Confidence 467889999999998544322 34455666777677777776765
No 424
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=34.39 E-value=1.1e+02 Score=33.70 Aligned_cols=60 Identities=13% Similarity=0.207 Sum_probs=42.4
Q ss_pred CCceEEEEEEccCCC--ChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770 285 RTTIVFGVIVYDQED--SSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNN 347 (554)
Q Consensus 285 ~~~v~Fg~v~~~~~~--~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~ 347 (554)
..++..-.+|.+.++ +.++.++|++-+ .|++++|..+.+++.. -.+-++.+.+.++++..
T Consensus 506 ~~~~vlLqaDvT~~~p~~~~lLk~~~~~G-~P~~~ff~~~g~e~~~--l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 506 LQDVVLLQADVTANDPAITALLKRLGVFG-VPTYLFFGPQGSEPEI--LTGFLTADAFLEHLERA 567 (569)
T ss_pred cCCeEEEEeeecCCCHHHHHHHHHcCCCC-CCEEEEECCCCCcCcC--CcceecHHHHHHHHHHh
Confidence 456666677776533 335688999987 9999999976555533 45677788888877653
No 425
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=33.69 E-value=56 Score=28.55 Aligned_cols=36 Identities=19% Similarity=0.335 Sum_probs=25.7
Q ss_pred cHHHHHHhCCcCCCCcceeccCCeEEEEeCCcccHHHHHHHH
Q psy16770 191 EQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFF 232 (554)
Q Consensus 191 ~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~~i~~fl 232 (554)
+..+++++||.| +||+++ +|+ ...|..+.+.|.+.+
T Consensus 118 ~~~~~~~~gi~g-tPt~~v--~g~---~~~G~~~~~~l~~~i 153 (154)
T cd03023 118 NRQLARALGITG-TPAFII--GDT---VIPGAVPADTLKEAI 153 (154)
T ss_pred HHHHHHHcCCCc-CCeEEE--CCE---EecCCCCHHHHHHHh
Confidence 457789999998 999777 564 334555777776654
No 426
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=33.67 E-value=86 Score=23.61 Aligned_cols=68 Identities=13% Similarity=0.161 Sum_probs=36.9
Q ss_pred EEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC----cHHHHHHhCCcCCCCcceeccCCeEEEEeCCcccHHH
Q psy16770 152 ILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN----EQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQK 227 (554)
Q Consensus 152 V~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~----~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~~ 227 (554)
..|+.++|+.|.+..-..++ .+..+....||... .+++.+..... ++|++.. +|..+ .....
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~-----~gi~~e~~~i~~~~~~~~~~~~~~~~p~~-~vP~l~~--~~~~l------~es~a 67 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKA-----LGLELNLKEVNLMKGEHLKPEFLKLNPQH-TVPTLVD--NGFVL------WESHA 67 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHH-----cCCCCEEEEecCccCCcCCHHHHhhCcCC-CCCEEEE--CCEEE------EcHHH
Confidence 35789999999865433332 33334444555322 24555544454 4999853 34321 12356
Q ss_pred HHHHHH
Q psy16770 228 MVEFFR 233 (554)
Q Consensus 228 i~~fl~ 233 (554)
|..|+.
T Consensus 68 I~~yL~ 73 (74)
T cd03045 68 ILIYLV 73 (74)
T ss_pred HHHHHh
Confidence 666653
No 427
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=33.08 E-value=1.6e+02 Score=32.28 Aligned_cols=45 Identities=20% Similarity=0.221 Sum_probs=34.5
Q ss_pred CChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770 299 DSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDN 346 (554)
Q Consensus 299 ~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~ 346 (554)
.+..+++.|+|.. .|+++++.++.. ......|.++...|..+|+.
T Consensus 127 ~~~~lak~fgV~g-iPTt~IIDkdGk--IV~~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 127 NGGTLAQSLNISV-YPSWAIIGKDGD--VQRIVKGSISEAQALALIRN 171 (521)
T ss_pred ccHHHHHHcCCCC-cCeEEEEcCCCe--EEEEEeCCCCHHHHHHHHHH
Confidence 5778999999997 999988755333 22456788899999999883
No 428
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=33.00 E-value=1e+02 Score=24.95 Aligned_cols=60 Identities=12% Similarity=0.144 Sum_probs=45.0
Q ss_pred EEEcCCCCcchhHHHHHHHHHhhccCCCCceEEEEEecccchHHHHhhCCCCCCccccceEEEEEEecCC
Q psy16770 373 VLFSEDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPEDSSEISLHIAAMWRMDYK 442 (554)
Q Consensus 373 vl~~~~~~~~~~~~~~l~~~a~~~~~~~~~v~F~~vd~~~q~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 442 (554)
+++++..+.+....+.++++-+. .-.+.+..=.||..+|++.++.. .....|.+++..+.
T Consensus 8 Lyvag~~p~S~~ai~nl~~i~e~--~l~g~y~LeVIDv~~qP~lAE~~--------~IvATPtLIK~~P~ 67 (87)
T TIGR02654 8 LYVAGNTPNSVRALKTLKNILET--EFQGVYALKVIDVLKNPQLAEED--------KILATPTLSKILPP 67 (87)
T ss_pred EEEeCCCchHHHHHHHHHHHHHH--hcCCceEEEEEEcccCHhHHhHC--------CEEEecHHhhcCCC
Confidence 45667777888889999999887 65566899999999999998865 22466766655443
No 429
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=32.68 E-value=71 Score=29.35 Aligned_cols=38 Identities=21% Similarity=0.432 Sum_probs=0.0
Q ss_pred cHHHHHHhCCcCCCCcceeccCCeEEEEeCCcccHHHHHHHHH
Q psy16770 191 EQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFR 233 (554)
Q Consensus 191 ~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~~i~~fl~ 233 (554)
+...+.++||.| +||+++ +|+ ....|.. ..+.|.+.++
T Consensus 156 ~~~~a~~~gv~G-vP~~vv--~g~-~~~~G~~-~~~~l~~~l~ 193 (193)
T PF01323_consen 156 DTAEARQLGVFG-VPTFVV--NGK-YRFFGAD-RLDELEDALQ 193 (193)
T ss_dssp HHHHHHHTTCSS-SSEEEE--TTT-EEEESCS-SHHHHHHHH-
T ss_pred HHHHHHHcCCcc-cCEEEE--CCE-EEEECCC-CHHHHHHHhC
No 430
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=32.49 E-value=1e+02 Score=25.94 Aligned_cols=51 Identities=24% Similarity=0.418 Sum_probs=34.9
Q ss_pred CCCCCCCHH-HHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhh-ccC
Q psy16770 26 GVPRTASLQ-EIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYD-LFG 84 (554)
Q Consensus 26 gv~~~a~~~-~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd-~~~ 84 (554)
|++|+.... ++-+.++.+...+++. ..+.+..|.+.| +.||.-+..|| .++
T Consensus 51 g~~p~s~evq~l~~~~~~~~~~~~~~------~~~~~~~l~~~y--~~~~~~~~~~~~~~~ 103 (118)
T PF07739_consen 51 GVDPDSPEVQELAERWMELINQFTGG------DPELLRGLAQMY--VEDPRFAAMYDKKFG 103 (118)
T ss_dssp T--TT-HHHHHHHHHHHHHHHHSS---------HHHHHHHHHHT--TSTHHHHHHHG-GGS
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhCC------CHHHHHHHHHHH--HcCHHHHhhccccCC
Confidence 566655444 6777888888888872 346888899998 88999999998 554
No 431
>KOG3414|consensus
Probab=31.85 E-value=3.5e+02 Score=23.65 Aligned_cols=116 Identities=19% Similarity=0.238 Sum_probs=64.7
Q ss_pred ccccccch-----hhhhhcCCCCceEEEEEcCC-CCcchhHHHHHHHHHhhccCCCCceEEEEEecccchHHHHhhCCCC
Q psy16770 351 TLPRISSQ-----SMLDAVCPVKKLCVVLFSED-SPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPE 424 (554)
Q Consensus 351 ~v~~lt~~-----~~~~~~c~~~~lcvvl~~~~-~~~~~~~~~~l~~~a~~~~~~~~~v~F~~vd~~~q~~~~~~~~~~~ 424 (554)
.+|.|++. ......| ++.||=|... ++.+-..-+.|.++|+. .+ +-.....+|.++-++|...+...
T Consensus 4 lLp~L~s~~~VdqaI~~t~~---rlvViRFGr~~Dp~C~~mD~~L~~i~~~--vs-nfa~IylvdideV~~~~~~~~l~- 76 (142)
T KOG3414|consen 4 LLPTLHSGWEVDQAILSTEE---RLVVIRFGRDWDPTCMKMDELLSSIAED--VS-NFAVIYLVDIDEVPDFVKMYELY- 76 (142)
T ss_pred eccccccHHHHHHHHhcccc---eEEEEEecCCCCchHhhHHHHHHHHHHH--Hh-hceEEEEEecchhhhhhhhhccc-
Confidence 35556553 3344444 7777777643 44556667788888887 53 23455566777778888777211
Q ss_pred CCccccceEEEEEEecCCCeeEEEecCCCCCcccccchhhHHHHHHHHhhhcCCCC
Q psy16770 425 DSSEISLHIAAMWRMDYKKIKYGWLLGDAVDDWKDYNTTKDRLDAGLRSLVNDPYN 480 (554)
Q Consensus 425 ~~~~~~~~~~~v~~~~~~~~ky~~~~~~~~~~~~~~~~t~e~l~~fl~~~~~g~~~ 480 (554)
+ |.. ++.-.+.+..+-..=.| --+-|+..-.+++.+.+.++-+-+|..+
T Consensus 77 ---~--p~t-vmfFfn~kHmkiD~gtg-dn~Kin~~~~~kq~~Idiie~iyRga~K 125 (142)
T KOG3414|consen 77 ---D--PPT-VMFFFNNKHMKIDLGTG-DNNKINFAFEDKQEFIDIIETIYRGARK 125 (142)
T ss_pred ---C--Cce-EEEEEcCceEEEeeCCC-CCceEEEEeccHHHHHHHHHHHHHhhhc
Confidence 1 222 22323333333321111 1123444446788888888888777654
No 432
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=31.65 E-value=1.2e+02 Score=24.22 Aligned_cols=53 Identities=8% Similarity=0.272 Sum_probs=30.8
Q ss_pred EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCc-HHHHHHhCCcCCCCccee
Q psy16770 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE-QGLARRLGVGSQLPQIAL 209 (554)
Q Consensus 151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~-~~l~~~~~v~~~~Pti~~ 209 (554)
+..++.+.|+.|.+..-.. ..++..+....+|.... +.+.+...... +|++..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L-----~~~gl~~~~~~v~~~~~~~~~~~~np~~~-vPvL~~ 72 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVL-----AAKNIPHEVININLKDKPDWFLEKNPQGK-VPALEI 72 (89)
T ss_pred EEEEeCCCCchHHHHHHHH-----HHcCCCCeEEEeCCCCCcHHHHhhCCCCC-cCEEEE
Confidence 4556788899998754332 33444455555554433 33545445554 898874
No 433
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=31.64 E-value=1.3e+02 Score=23.90 Aligned_cols=47 Identities=13% Similarity=0.309 Sum_probs=31.3
Q ss_pred eEEEEEc-CCCCcchhHHHHHHHHHhhccCC-CCceEEEEEecccchHHHH
Q psy16770 370 LCVVLFS-EDSPEHDASRHTLRRFAQESRFV-HNNIAFMYVFIEKQPEFVN 418 (554)
Q Consensus 370 lcvvl~~-~~~~~~~~~~~~l~~~a~~~~~~-~~~v~F~~vd~~~q~~~~~ 418 (554)
..+|.|. ...+.+....+.|.++.++ ++ ++.+.|++|..+...+-..
T Consensus 3 ~~ll~fwa~~c~~c~~~~~~l~~l~~~--~~~~~~v~~v~Vs~d~~~~~~~ 51 (95)
T PF13905_consen 3 PVLLYFWASWCPPCKKELPKLKELYKK--YKKKDDVEFVFVSLDEDEEEWK 51 (95)
T ss_dssp EEEEEEE-TTSHHHHHHHHHHHHHHHH--HTTTTTEEEEEEE-SSSHHHHH
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHH--hCCCCCEEEEEEEeCCCHHHHH
Confidence 3344443 4555677788899999888 87 5679999998876533333
No 434
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=31.20 E-value=2e+02 Score=24.32 Aligned_cols=44 Identities=11% Similarity=0.099 Sum_probs=35.6
Q ss_pred CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC
Q psy16770 146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN 190 (554)
Q Consensus 146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~ 190 (554)
.++++||.-.|.-|+.-. --..++++.+.++..|+.+...=|..
T Consensus 20 ~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnq 63 (108)
T PF00255_consen 20 KGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQ 63 (108)
T ss_dssp TTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBST
T ss_pred CCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHH
Confidence 467889999999999877 45578888888887688888877765
No 435
>KOG0860|consensus
Probab=30.93 E-value=2.1e+02 Score=24.53 Aligned_cols=57 Identities=18% Similarity=0.121 Sum_probs=30.3
Q ss_pred HHHHHhhhcCCCCCccccccccchhh-----hhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhHHHHHH
Q psy16770 468 DAGLRSLVNDPYNNLLYDTALKEISD-----EYIQSLGVRIFNRIFMHIEMAQQSLSRQHILPAVSLIFTV 533 (554)
Q Consensus 468 ~~fl~~~~~g~~~~~~~~~~lp~~~d-----e~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 533 (554)
.+-++++++-..+ |-+|.| +..-+-|-|...++- =.+||.++.++-+|.++.+|+.+
T Consensus 46 r~NV~KVlER~ek-------L~~L~drad~L~~~as~F~~~A~klk--rk~wWkn~Km~~il~~v~~i~l~ 107 (116)
T KOG0860|consen 46 RENVEKVLERGEK-------LDELDDRADQLQAGASQFEKTAVKLK--RKMWWKNCKMRIILGLVIIILLV 107 (116)
T ss_pred HHhHHHHHHhcch-------HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777776666 444444 223344455555532 25677777755555544444333
No 436
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=30.55 E-value=1.2e+02 Score=26.58 Aligned_cols=75 Identities=13% Similarity=0.144 Sum_probs=43.0
Q ss_pred CceEEEEEcC-CCCcchhHHHHHHHHHhhccCCCCceEEEEEecccchHHHHhhCCCCCCccccceEEEEEEecCCC-ee
Q psy16770 368 KKLCVVLFSE-DSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPEDSSEISLHIAAMWRMDYKK-IK 445 (554)
Q Consensus 368 ~~lcvvl~~~-~~~~~~~~~~~l~~~a~~~~~~~~~v~F~~vd~~~q~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~k 445 (554)
+++.++.++. ...|+......|.++|+. .. .+.+-++..++..++.+.++.+. ...+|+++..+.++ ..
T Consensus 41 ~~~~ilvi~e~WCgD~~~~vP~l~kiae~--~p--~i~~~~i~rd~~~el~~~~lt~g-----~~~IP~~I~~d~~~~~l 111 (129)
T PF14595_consen 41 KPYNILVITETWCGDCARNVPVLAKIAEA--NP--NIEVRIILRDENKELMDQYLTNG-----GRSIPTFIFLDKDGKEL 111 (129)
T ss_dssp S-EEEEEE--TT-HHHHHHHHHHHHHHHH---T--TEEEEEE-HHHHHHHTTTTTT-S-----S--SSEEEEE-TT--EE
T ss_pred CCcEEEEEECCCchhHHHHHHHHHHHHHh--CC--CCeEEEEEecCChhHHHHHHhCC-----CeecCEEEEEcCCCCEe
Confidence 3556666664 456778888999999998 43 46666666666677777774421 25778777776553 34
Q ss_pred EEEecC
Q psy16770 446 YGWLLG 451 (554)
Q Consensus 446 y~~~~~ 451 (554)
-.|.+-
T Consensus 112 g~wger 117 (129)
T PF14595_consen 112 GRWGER 117 (129)
T ss_dssp EEEESS
T ss_pred EEEcCC
Confidence 445554
No 437
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=30.38 E-value=2.5e+02 Score=23.98 Aligned_cols=87 Identities=9% Similarity=0.042 Sum_probs=52.5
Q ss_pred CCCcEEEEEEccc--ccccccchHHHHHHHHHhCCCCEEEEEE-EecCcH-----------HHHHHhCCcCCCCcceec-
Q psy16770 146 YTTPHLILFYSDW--CFACLQVEPIFKKLMDELSPLGVGFFTV-HVHNEQ-----------GLARRLGVGSQLPQIALL- 210 (554)
Q Consensus 146 ~~~~~lV~Fya~w--C~~C~~l~p~~~~~a~~l~~~~v~~~~V-d~~~~~-----------~l~~~~~v~~~~Pti~~~- 210 (554)
.+++++| +||. .+.-+.....+.+..+.+....+.+..+ +-.... .|.++|++....-++++.
T Consensus 9 ~~R~lvv--~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiG 86 (118)
T PF13778_consen 9 KNRLLVV--FAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIG 86 (118)
T ss_pred cCceEEE--ECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEe
Confidence 3444443 4443 3334445556666556666555666555 222233 788999976423344444
Q ss_pred cCCeEEEEeCCcccHHHHHHHHHH
Q psy16770 211 TDGRTSFFKEPSFSVQKMVEFFRL 234 (554)
Q Consensus 211 ~~g~~~~y~~g~~~~~~i~~fl~~ 234 (554)
++|.+....+...+.+.|-..|..
T Consensus 87 KDG~vK~r~~~p~~~~~lf~~ID~ 110 (118)
T PF13778_consen 87 KDGGVKLRWPEPIDPEELFDTIDA 110 (118)
T ss_pred CCCcEEEecCCCCCHHHHHHHHhC
Confidence 889887777777898998887653
No 438
>KOG3442|consensus
Probab=29.95 E-value=1.2e+02 Score=26.15 Aligned_cols=53 Identities=19% Similarity=0.156 Sum_probs=38.2
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHH
Q psy16770 21 PYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAER 76 (554)
Q Consensus 21 ~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~ 76 (554)
.-+||+|++..+.++|-+.|..|=....+.+..+ ...--++..|-|.|.-.-+
T Consensus 61 a~qILnV~~~ln~eei~k~yehLFevNdkskGGS---FYLQSKVfRAkErld~El~ 113 (132)
T KOG3442|consen 61 AQQILNVKEPLNREEIEKRYEHLFEVNDKSKGGS---FYLQSKVFRAKERLDEELK 113 (132)
T ss_pred HhhHhCCCCCCCHHHHHHHHHHHHhccCcccCcc---eeehHHHHHHHHHHHHHHH
Confidence 4579999999999999999999999988887643 2233345555555544333
No 439
>PHA02513 V1 structural protein V1; Reviewed
Probab=29.47 E-value=1.7e+02 Score=24.61 Aligned_cols=44 Identities=16% Similarity=0.155 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHhh--hcccchhhhhhHHHHHHHHHHHHHHHHH
Q psy16770 501 VRIFNRIFMHIEMAQQ--SLSRQHILPAVSLIFTVIIIVVLAMIMN 544 (554)
Q Consensus 501 ~r~~~~~~~~~~~~~~--~~~~~~~~~~~s~~~~~~~i~~~~~~~~ 544 (554)
|.++...-+++|+... .+++.|..-+=-++|-++||+.|.++++
T Consensus 40 gnii~sa~~fveva~~npkltkge~~n~k~ii~L~IFIliGivl~~ 85 (135)
T PHA02513 40 GNIISSARRFVEVAKANPKLTKGEGTNIGVLLGLFIFILIGIVLLP 85 (135)
T ss_pred chHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHHHHHHhh
Confidence 4445556678888877 6688888888888888999988888764
No 440
>PRK09301 circadian clock protein KaiB; Provisional
Probab=29.21 E-value=1.3e+02 Score=25.28 Aligned_cols=60 Identities=12% Similarity=0.139 Sum_probs=45.1
Q ss_pred EEEcCCCCcchhHHHHHHHHHhhccCCCCceEEEEEecccchHHHHhhCCCCCCccccceEEEEEEecCC
Q psy16770 373 VLFSEDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPEDSSEISLHIAAMWRMDYK 442 (554)
Q Consensus 373 vl~~~~~~~~~~~~~~l~~~a~~~~~~~~~v~F~~vd~~~q~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 442 (554)
+++++....+....+.++++-+. .-.+.+..=.||..+|++.++.+ .....|.+++..+.
T Consensus 11 LyVag~tp~S~~ai~nL~~icE~--~l~g~y~LeVIDv~~qPelAE~~--------~IvATPTLIK~~P~ 70 (103)
T PRK09301 11 LYVAGNTPNSVRALKTLKNILET--EFKGVYALKVIDVLKNPQLAEED--------KILATPTLAKILPP 70 (103)
T ss_pred EEEeCCCchHHHHHHHHHHHHHH--hcCCceEEEEEEcccCHhHHhHC--------CeEEecHHhhcCCC
Confidence 45667777888889999999887 65566899999999999998865 22466766655443
No 441
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=28.83 E-value=71 Score=22.62 Aligned_cols=19 Identities=5% Similarity=0.322 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhhcccc
Q psy16770 532 TVIIIVVLAMIMNHYMKLE 550 (554)
Q Consensus 532 ~~~~i~~~~~~~~~~~~~~ 550 (554)
.++|++|+|+++.+|+...
T Consensus 16 v~~~~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 16 VLFFVFFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHHHHHcccc
Confidence 3456777888888887553
No 442
>TIGR03092 SASP_sspI small, acid-soluble spore protein I. This protein family is restricted to a subset of endospore-forming bacteria such as Bacillus subtilis, all of which are in the Firmicutes (low-GC Gram-positive) lineage. It is a minor SASP (small, acid-soluble spore protein) designated SspI. The gene in Bacillus subtilis previously was designated ysfA.
Probab=28.75 E-value=75 Score=24.12 Aligned_cols=40 Identities=23% Similarity=0.225 Sum_probs=26.8
Q ss_pred cchhhHHHHHHHHhhhc-CCCCCccccccccchhhhhhhHHHHHHHHHHHHHHHHHhhhcccc
Q psy16770 460 YNTTKDRLDAGLRSLVN-DPYNNLLYDTALKEISDEYIQSLGVRIFNRIFMHIEMAQQSLSRQ 521 (554)
Q Consensus 460 ~~~t~e~l~~fl~~~~~-g~~~~~~~~~~lp~~~de~~~~~~~r~~~~~~~~~~~~~~~~~~~ 521 (554)
.+.|++.|+++|.+-+. |.++ .||- + -.++|.+|.|++-.
T Consensus 11 ~~~s~~elk~~I~daI~sgEEk------~LPG--------L--------GVlFE~~W~~~~~~ 51 (65)
T TIGR03092 11 SNNTKEQLEATIVDAIQSGEEK------MLPG--------L--------GVLFEAIWKHANEQ 51 (65)
T ss_pred cCCCHHHHHHHHHHHHhccchh------cCCc--------c--------HHHHHHHHHhcCHH
Confidence 45689999999888664 5554 3552 2 23678888877644
No 443
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=28.65 E-value=93 Score=30.08 Aligned_cols=31 Identities=23% Similarity=0.361 Sum_probs=23.6
Q ss_pred CCCcEEEEEEcccccccccchHHHHHHHHHh
Q psy16770 146 YTTPHLILFYSDWCFACLQVEPIFKKLMDEL 176 (554)
Q Consensus 146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l 176 (554)
..++.++.|+...|++|+...|..++.....
T Consensus 83 ~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~ 113 (244)
T COG1651 83 YAPVTVVEFFDYTCPYCKEAFPELKKKYIDD 113 (244)
T ss_pred CCCceEEEEecCcCccHHHHHHHHHHHhhhc
Confidence 3468899999999999988777777644333
No 444
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=28.05 E-value=1.4e+02 Score=28.40 Aligned_cols=55 Identities=20% Similarity=0.311 Sum_probs=37.9
Q ss_pred CCCcEEEEEEccccc-ccccchHHHHHHHHHhC---CCCEEEEEEEecCc---HHHHHHhCC
Q psy16770 146 YTTPHLILFYSDWCF-ACLQVEPIFKKLMDELS---PLGVGFFTVHVHNE---QGLARRLGV 200 (554)
Q Consensus 146 ~~~~~lV~Fya~wC~-~C~~l~p~~~~~a~~l~---~~~v~~~~Vd~~~~---~~l~~~~~v 200 (554)
.+++++|.|-=..|+ -|-.....+.++.+.+. +.++.+..|-++-+ ++..++|..
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~ 127 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAE 127 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhc
Confidence 567899988777887 58888888888888877 33455555555544 445556665
No 445
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=27.95 E-value=1.9e+02 Score=24.87 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=17.3
Q ss_pred hhHHhHhCCCCCCceEEEEeCCC
Q psy16770 301 SSVFQRFKVPGDKDSLLIFKEDK 323 (554)
Q Consensus 301 ~~l~~k~~i~~~~Ptlvvfk~~~ 323 (554)
..+.+.|++.+ .|+++++.++.
T Consensus 89 ~~~~~~~~v~~-iPt~~lid~~G 110 (132)
T cd02964 89 ELLEKQFKVEG-IPTLVVLKPDG 110 (132)
T ss_pred HHHHHHcCCCC-CCEEEEECCCC
Confidence 35677899997 99999997543
No 446
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=27.55 E-value=69 Score=19.75 Aligned_cols=17 Identities=18% Similarity=0.458 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHhCC
Q psy16770 33 LQEIRKNYKRLVVEWHP 49 (554)
Q Consensus 33 ~~~ik~ay~~l~~~~hP 49 (554)
.++.|.+-|+.|+.||-
T Consensus 10 ~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 10 KEDKRAQLRQAALEYHE 26 (28)
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 36788999999999993
No 447
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=26.84 E-value=3.5e+02 Score=22.10 Aligned_cols=71 Identities=7% Similarity=0.048 Sum_probs=42.8
Q ss_pred CCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeE--EEEeCCccc
Q psy16770 147 TTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRT--SFFKEPSFS 224 (554)
Q Consensus 147 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~--~~y~~g~~~ 224 (554)
+.+.++.|..+. ..|..+....++++..-. .+.+...+.. .. .|++.+..+|+. +.|+|-+ .
T Consensus 19 ~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSd--kI~~~~~~~~-----------~~-~P~~~i~~~~~~~gIrF~GiP-~ 82 (94)
T cd02974 19 NPVELVASLDDS-EKSAELLELLEEIASLSD--KITLEEDNDD-----------ER-KPSFSINRPGEDTGIRFAGIP-M 82 (94)
T ss_pred CCEEEEEEeCCC-cchHHHHHHHHHHHHhCC--ceEEEEecCC-----------CC-CCEEEEecCCCcccEEEEecC-C
Confidence 345566666554 888888877777776543 3555332221 14 799999877643 6777644 3
Q ss_pred HHHHHHHHH
Q psy16770 225 VQKMVEFFR 233 (554)
Q Consensus 225 ~~~i~~fl~ 233 (554)
=.++..|+.
T Consensus 83 GhEf~Slil 91 (94)
T cd02974 83 GHEFTSLVL 91 (94)
T ss_pred chhHHHHHH
Confidence 355666554
No 448
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=26.79 E-value=90 Score=31.69 Aligned_cols=71 Identities=20% Similarity=0.208 Sum_probs=48.0
Q ss_pred hHHHHHHHHHhh----ccCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC--ChhHHHHHHHHHHHHHHcC
Q psy16770 2 LWYTFLLNVLFI----NCAVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN--DPTAQEKFLQLTEAYNILS 72 (554)
Q Consensus 2 ~~~~~~~~~~~~----~~~~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~--~~~~~~~~~~i~~Ay~~L~ 72 (554)
||..|+|++.+. ......+.|+.|||++..-..++=+.=...+.+.-|-.-. +|.-..+..++..+...|.
T Consensus 229 LW~RFFLlsVfaTmyl~d~~R~~Fy~alGld~~~yD~~Vi~~Tn~~a~rvFP~~Ldvd~P~F~~~L~~~~~~n~~l~ 305 (351)
T CHL00185 229 LWCRFFLLSVFATMYLNDLQRSDFYAAIGLDARQFDMHVIRKTNESAARLFPVVLDVDNPKFFKYLDQCACANLKLI 305 (351)
T ss_pred HHHHHHHHHHHHHheehhcchHHHHHHhCCCHHHhhHHHHHHhhHHHHhhCCeeecCCCHHHHHHHHHHHHHHHHHH
Confidence 566666665544 5678899999999999776555555556677777776642 5655555566666655554
No 449
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=26.64 E-value=54 Score=28.80 Aligned_cols=33 Identities=9% Similarity=0.292 Sum_probs=22.5
Q ss_pred EEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCc
Q psy16770 152 ILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE 191 (554)
Q Consensus 152 V~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~ 191 (554)
..|+.|+|+.|++....++ ..|+.+-.+|..++
T Consensus 3 ~iY~~~~C~~crkA~~~L~-------~~~i~~~~~d~~~~ 35 (132)
T PRK13344 3 KIYTISSCTSCKKAKTWLN-------AHQLSYKEQNLGKE 35 (132)
T ss_pred EEEeCCCCHHHHHHHHHHH-------HcCCCeEEEECCCC
Confidence 4578899999987553333 34677777776653
No 450
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=26.05 E-value=3.3e+02 Score=24.71 Aligned_cols=45 Identities=4% Similarity=-0.102 Sum_probs=31.0
Q ss_pred CChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770 299 DSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDN 346 (554)
Q Consensus 299 ~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~ 346 (554)
.+..+.+.|++.+ .|+.+++.++.. ......|.++.+.+.+++..
T Consensus 125 ~~~~~~~~~~v~~-~P~~~~id~~G~--i~~~~~G~~~~~~l~~~l~~ 169 (173)
T TIGR00385 125 PNGKLGLDLGVYG-APETFLVDGNGV--ILYRHAGPLNNEVWTEGFLP 169 (173)
T ss_pred CCCchHHhcCCee-CCeEEEEcCCce--EEEEEeccCCHHHHHHHHHH
Confidence 4567888999986 897777755433 22345677888888887764
No 451
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=25.33 E-value=46 Score=17.05 Aligned_cols=13 Identities=46% Similarity=0.695 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHcC
Q psy16770 60 KFLQLTEAYNILS 72 (554)
Q Consensus 60 ~~~~i~~Ay~~L~ 72 (554)
.|..+..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 4667777777664
No 452
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=24.66 E-value=1.1e+02 Score=20.35 Aligned_cols=19 Identities=16% Similarity=0.433 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q psy16770 526 AVSLIFTVIIIVVLAMIMN 544 (554)
Q Consensus 526 ~~s~~~~~~~i~~~~~~~~ 544 (554)
++++.-.++||.++||-|.
T Consensus 18 ~F~l~mi~vFi~li~ytl~ 36 (38)
T PF09125_consen 18 AFALAMILVFIALIGYTLA 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3677777888888888763
No 453
>KOG2501|consensus
Probab=24.48 E-value=1.3e+02 Score=27.34 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=21.4
Q ss_pred CChhHHhHhCCCCCCceEEEEeCCCC
Q psy16770 299 DSSSVFQRFKVPGDKDSLLIFKEDKD 324 (554)
Q Consensus 299 ~~~~l~~k~~i~~~~Ptlvvfk~~~~ 324 (554)
..+++.++|.|++ .|++++.+++++
T Consensus 103 ~~~~l~~ky~v~~-iP~l~i~~~dG~ 127 (157)
T KOG2501|consen 103 LIQKLSEKYEVKG-IPALVILKPDGT 127 (157)
T ss_pred HHHHHHHhcccCc-CceeEEecCCCC
Confidence 4678899999997 999999998665
No 454
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=24.48 E-value=46 Score=30.78 Aligned_cols=20 Identities=30% Similarity=0.758 Sum_probs=16.3
Q ss_pred cHHHHHHhCCcCCCCcceecc
Q psy16770 191 EQGLARRLGVGSQLPQIALLT 211 (554)
Q Consensus 191 ~~~l~~~~~v~~~~Pti~~~~ 211 (554)
+..+++++||++ +||++++.
T Consensus 136 D~~la~~m~I~~-~Ptlvi~~ 155 (176)
T PF13743_consen 136 DQQLAREMGITG-FPTLVIFN 155 (176)
T ss_dssp HHHHHHHTT-SS-SSEEEEE-
T ss_pred HHHHHHHcCCCC-CCEEEEEe
Confidence 567999999997 99999996
No 455
>KOG1422|consensus
Probab=24.18 E-value=3e+02 Score=26.29 Aligned_cols=73 Identities=19% Similarity=0.245 Sum_probs=45.8
Q ss_pred cccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCcccHHHHHHHHHHhCC
Q psy16770 158 WCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLP 237 (554)
Q Consensus 158 wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~~i~~fl~~~~~ 237 (554)
.|+.|+++.-.+. +++..+.+-.||...-++--....-.++.|-+++ +|+ ...+.+.|.+|+++.++
T Consensus 20 dcpf~qr~~m~L~-----~k~~~f~vttVd~~~kp~~f~~~sp~~~~P~l~~--d~~------~~tDs~~Ie~~Lee~l~ 86 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE-----LKGVPFKVTTVDLSRKPEWFLDISPGGKPPVLKF--DEK------WVTDSDKIEEFLEEKLP 86 (221)
T ss_pred CChhHHHHHHHHH-----HcCCCceEEEeecCCCcHHHHhhCCCCCCCeEEe--CCc------eeccHHHHHHHHHHhcC
Confidence 3666666443332 3444588999999988777655544433555444 222 22456899999999998
Q ss_pred CCcccc
Q psy16770 238 YKLIVP 243 (554)
Q Consensus 238 ~~~v~~ 243 (554)
++....
T Consensus 87 ~p~~~~ 92 (221)
T KOG1422|consen 87 PPKLPT 92 (221)
T ss_pred CCCCcc
Confidence 874333
No 456
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=24.06 E-value=1.5e+02 Score=25.22 Aligned_cols=45 Identities=18% Similarity=0.271 Sum_probs=31.8
Q ss_pred cchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccC
Q psy16770 164 QVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTD 212 (554)
Q Consensus 164 ~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~ 212 (554)
.+.+..+.+.+.+...+-. .+..-++.+-++|+|+. +|++++-++
T Consensus 36 ~~~~t~~~~~~l~~~~~~~---~~v~IdP~~F~~y~I~~-VPa~V~~~~ 80 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDPC---PGVQIDPRLFRQYNITA-VPAFVVVKD 80 (113)
T ss_pred CHHHHHHHHHHHhhccCCC---cceeEChhHHhhCCceE-cCEEEEEcC
Confidence 6666666666655432111 34455899999999996 999999876
No 457
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=23.85 E-value=1.4e+02 Score=29.45 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=18.9
Q ss_pred CCCCcEEEEEEcccccccccch
Q psy16770 145 SYTTPHLILFYSDWCFACLQVE 166 (554)
Q Consensus 145 ~~~~~~lV~Fya~wC~~C~~l~ 166 (554)
..+++.++..-+.||+.|....
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~s 77 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAES 77 (249)
T ss_pred CCCeeEEEEEecccCccchhhH
Confidence 4678999999999999998754
No 458
>KOG0911|consensus
Probab=23.81 E-value=1.5e+02 Score=28.60 Aligned_cols=57 Identities=21% Similarity=0.210 Sum_probs=39.7
Q ss_pred cccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcc-eeccCCeEEEEeCCc
Q psy16770 156 SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI-ALLTDGRTSFFKEPS 222 (554)
Q Consensus 156 a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti-~~~~~g~~~~y~~g~ 222 (554)
.|-||.++++. ..|+..++.+...|.-.+.++.+....-+..||+ .+|.+|+ +.||.
T Consensus 151 ~P~CGFS~~~v-------~iL~~~nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GE---FiGGl 208 (227)
T KOG0911|consen 151 EPKCGFSRQLV-------GILQSHNVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGE---FIGGL 208 (227)
T ss_pred cccccccHHHH-------HHHHHcCCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCE---eccCc
Confidence 57788776544 4444447889999999999887655433347887 6778884 55664
No 459
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=23.27 E-value=1.2e+02 Score=30.85 Aligned_cols=71 Identities=24% Similarity=0.317 Sum_probs=47.0
Q ss_pred hHHHHHHHHHhh----ccCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC--ChhHHHHHHHHHHHHHHcC
Q psy16770 2 LWYTFLLNVLFI----NCAVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN--DPTAQEKFLQLTEAYNILS 72 (554)
Q Consensus 2 ~~~~~~~~~~~~----~~~~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~--~~~~~~~~~~i~~Ay~~L~ 72 (554)
||..|+|++.+. ......+.|+.|||++..-..++=+.=...+++.-|-.-. +|.=..+..++.++..-|.
T Consensus 233 LW~RFFLlsVfaTmyl~d~~R~~Fy~alGlD~~~yD~~Vi~~Tne~s~rvFP~~Ldvd~P~F~~~L~~~~~~n~~l~ 309 (355)
T PRK13654 233 LWIRFFLLAVFATMYLRDHERPDFYEALGLDAREYDQEVIRKTNETSARVFPVVLDVDDPRFYARLERCVENNEKLR 309 (355)
T ss_pred HHHHHHHHHHHhheeeecccchHHHHHhCCCHHHhhHHHHHHhhHHHHhhCCeeecCCChHHHHHHHHHHHHHHHHH
Confidence 577777776654 5678899999999999776665555556777777776642 4544444444444444443
No 460
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=22.93 E-value=4.7e+02 Score=22.18 Aligned_cols=86 Identities=9% Similarity=0.001 Sum_probs=45.6
Q ss_pred cCCceEEEEEecCCchhHHHHHHhh--------ccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCC-c
Q psy16770 258 EDNKVHALLFQRSLPVRLRYLINAF--------KHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPS-A 328 (554)
Q Consensus 258 ~~~~~~v~~f~~~~~~~~~~~~~a~--------~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~-~ 328 (554)
.+.|.+++++.+...+.+..+-... -+..++-+-..|+...+...++..+++.+ +|+++++-....+.. -
T Consensus 15 ~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~~-~P~~~~l~~~~~~~~vv 93 (116)
T cd02991 15 QELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINTRMLFWACSVAKPEGYRVSQALRERT-YPFLAMIMLKDNRMTIV 93 (116)
T ss_pred hhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHcCEEEEEEecCChHHHHHHHHhCCCC-CCEEEEEEecCCceEEE
Confidence 4677777777554332221111110 12334444455554334456899999997 999999854332221 1
Q ss_pred eeecCCCChhHHHhHH
Q psy16770 329 SITMNSIPVPTLQDIT 344 (554)
Q Consensus 329 ~i~~~~~~~~~l~~fi 344 (554)
..-.|.++.+.|...+
T Consensus 94 ~~i~G~~~~~~ll~~L 109 (116)
T cd02991 94 GRLEGLIQPEDLINRL 109 (116)
T ss_pred EEEeCCCCHHHHHHHH
Confidence 1235666666554433
No 461
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=22.59 E-value=1.3e+02 Score=27.26 Aligned_cols=26 Identities=15% Similarity=0.391 Sum_probs=21.3
Q ss_pred CChhHHhHhCCCCCCceEEEEeCCCCC
Q psy16770 299 DSSSVFQRFKVPGDKDSLLIFKEDKDR 325 (554)
Q Consensus 299 ~~~~l~~k~~i~~~~Ptlvvfk~~~~~ 325 (554)
+.++++++|++.+ .|++++|...++.
T Consensus 103 s~~ELa~kf~vrs-tPtfvFfdk~Gk~ 128 (182)
T COG2143 103 STEELAQKFAVRS-TPTFVFFDKTGKT 128 (182)
T ss_pred cHHHHHHHhcccc-CceEEEEcCCCCE
Confidence 3568999999997 9999999875553
No 462
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=22.43 E-value=1.5e+02 Score=27.27 Aligned_cols=54 Identities=19% Similarity=0.268 Sum_probs=34.8
Q ss_pred CCCcEEEEEEccccc-ccccchHHHHHHHHHhCC--CCEEEEEEEecCc---HHHHHHhC
Q psy16770 146 YTTPHLILFYSDWCF-ACLQVEPIFKKLMDELSP--LGVGFFTVHVHNE---QGLARRLG 199 (554)
Q Consensus 146 ~~~~~lV~Fya~wC~-~C~~l~p~~~~~a~~l~~--~~v~~~~Vd~~~~---~~l~~~~~ 199 (554)
.+++++|.|.=..|+ .|-.....+.++.+.+.. ..+.+..|-.+-+ ++..++|.
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~Y~ 110 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKKYA 110 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHHHH
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHHHH
Confidence 467889999888886 588777777777766652 3477766666643 34444443
No 463
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=22.22 E-value=3.2e+02 Score=27.15 Aligned_cols=101 Identities=15% Similarity=0.121 Sum_probs=58.5
Q ss_pred cHHHHHHhCCcCCCCcceeccCCeEEEEeCC-cccHHHHHHHHHHhCCCCccccCCcccHHHHHhhhhc-C-CceEEEEE
Q psy16770 191 EQGLARRLGVGSQLPQIALLTDGRTSFFKEP-SFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWRE-D-NKVHALLF 267 (554)
Q Consensus 191 ~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g-~~~~~~i~~fl~~~~~~~~v~~~t~~~~~~fl~~~~~-~-~~~~v~~f 267 (554)
.++++++++|.- +|--+.+.+ ..|..+ ..+.+++.+.+++.-..+.....+..++.+++..+.. . +.+.++-.
T Consensus 13 ~~~~~~~~~i~v-vPl~i~~~~---~~y~D~~~i~~~efy~~l~~~~~~p~TS~ps~~~~~~~f~~~~~~gyd~ii~i~i 88 (280)
T PF02645_consen 13 PPELAEEYGIYV-VPLNIIIDG---KEYRDGVDISPEEFYEKLRESGEIPKTSQPSPGEFEEAFEKLLEEGYDEIIVITI 88 (280)
T ss_dssp -HHHHHHTTEEE-E--EEEETT---EEEETTTTSCHHHHHHHHHHTTSEEEEE---HHHHHHHHHHHHHTTTSEEEEEES
T ss_pred CHHHHHhCCeEE-EeEEEecCC---eEEecCCCCCHHHHHHHHHhcCCCceecCCCHHHHHHHHHHHHHCCCCeEEEEeC
Confidence 468899999996 998777654 234433 5688999998865533222344566677666654212 2 34666666
Q ss_pred ecCCchhHHHHHHhhccCCceEEEEEEc
Q psy16770 268 QRSLPVRLRYLINAFKHRTTIVFGVIVY 295 (554)
Q Consensus 268 ~~~~~~~~~~~~~a~~~~~~v~Fg~v~~ 295 (554)
++.-+..+.....+++..+..++-.+|.
T Consensus 89 Ss~LSgty~~a~~aa~~~~~~~i~ViDS 116 (280)
T PF02645_consen 89 SSGLSGTYNSARLAAKMLPDIKIHVIDS 116 (280)
T ss_dssp -TTT-THHHHHHHHHHHHTTTEEEEEE-
T ss_pred CcchhhHHHHHHHHHhhcCcCEEEEEeC
Confidence 7777776666666663335667777753
No 464
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=22.06 E-value=1.4e+02 Score=29.92 Aligned_cols=71 Identities=21% Similarity=0.300 Sum_probs=46.0
Q ss_pred hHHHHHHHHHhh----ccCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC--ChhHHHHHHHHHHHHHHcC
Q psy16770 2 LWYTFLLNVLFI----NCAVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN--DPTAQEKFLQLTEAYNILS 72 (554)
Q Consensus 2 ~~~~~~~~~~~~----~~~~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~--~~~~~~~~~~i~~Ay~~L~ 72 (554)
||..|+|++.+. ......+.|+.|||++..-..++=+.=.+.+++.-|-.-. +|.=.++..++.++..-|.
T Consensus 213 LW~RFFLlsVfaTmyl~d~~R~~Fy~alGld~~~yD~~Vi~~Tn~~s~rvFP~~Ldvd~P~F~~~L~~~~~~n~~l~ 289 (323)
T cd01047 213 LWIRFFLLSVYATMYLNDHQRPDFYEALGLDTTEFDMHVIRETNETAARVFPAVLDVDNPEFRRGLDRLVDLNLKLE 289 (323)
T ss_pred HHHHHHHHHHHHhheeeccchHHHHHHhCCCHHHhhHHHHHHhhHHHHhhCCeeecCCChHHHHHHHHHHHHHHHHH
Confidence 567776666554 5688899999999999776555555556677777776642 4544444444444444443
No 465
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=21.54 E-value=1.4e+02 Score=30.22 Aligned_cols=70 Identities=19% Similarity=0.244 Sum_probs=44.8
Q ss_pred hHHHHHHHHHh----hccCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC--ChhHHHHHHHHHHHHHHc
Q psy16770 2 LWYTFLLNVLF----INCAVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN--DPTAQEKFLQLTEAYNIL 71 (554)
Q Consensus 2 ~~~~~~~~~~~----~~~~~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~--~~~~~~~~~~i~~Ay~~L 71 (554)
||..|+|++.+ +......+.|+.||+++..-..++=+.=...+.+.-|-.-. +|.=.++..++..+..-|
T Consensus 223 LW~RFFLLsVfaTmyl~d~~R~~Fy~alGld~~~yD~~Vi~~Tne~s~rvFP~~Ldvd~P~F~~~L~~~~~~n~~l 298 (337)
T TIGR02029 223 LWSRFFLLSVYSTMYLRDHQRPGFYEALGLDATDFDLQVFRNTNETSGRIFPMTLNTEHPRFRRLLDRMAGYSEKI 298 (337)
T ss_pred HHHHHHHHHHHHHHhhhhcccHHHHHHhCCCHHHhhHHHHHHhhHHHHhhCCeeecCCCHHHHHHHHHHHHHHHHH
Confidence 56666665544 45788899999999999765555555556667777776642 454444444444444444
No 466
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=21.09 E-value=3.1e+02 Score=25.66 Aligned_cols=78 Identities=17% Similarity=0.178 Sum_probs=45.7
Q ss_pred CcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcH-HHHHHhCCcCCCCcceeccCCeEEEEeCCcccHH
Q psy16770 148 TPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQ-GLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQ 226 (554)
Q Consensus 148 ~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~-~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~ 226 (554)
...+..|+.++|+.|.+..=.++ ..+..+....||....+ ++-+ .+-.|++|++.. +|..+ ....
T Consensus 8 ~~~~~Ly~~~~s~~~~rv~~~L~-----e~gl~~e~~~v~~~~~~~~~~~-~nP~g~VPvL~~--~g~~l------~ES~ 73 (211)
T PRK09481 8 RSVMTLFSGPTDIYSHQVRIVLA-----EKGVSVEIEQVEKDNLPQDLID-LNPYQSVPTLVD--RELTL------YESR 73 (211)
T ss_pred CCeeEEeCCCCChhHHHHHHHHH-----HCCCCCEEEeCCcccCCHHHHH-hCCCCCCCEEEE--CCEEe------eCHH
Confidence 34455666788999988664333 23444566666654332 3333 333336999863 44322 2347
Q ss_pred HHHHHHHHhCCCC
Q psy16770 227 KMVEFFRLKLPYK 239 (554)
Q Consensus 227 ~i~~fl~~~~~~~ 239 (554)
.|..|+.+..+..
T Consensus 74 AIl~YL~~~~~~~ 86 (211)
T PRK09481 74 IIMEYLDERFPHP 86 (211)
T ss_pred HHHHHHHHhCCCC
Confidence 8999999887643
No 467
>KOG1672|consensus
Probab=20.82 E-value=3.7e+02 Score=25.40 Aligned_cols=37 Identities=11% Similarity=0.204 Sum_probs=29.2
Q ss_pred CCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCC
Q psy16770 285 RTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKD 324 (554)
Q Consensus 285 ~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~ 324 (554)
.-..+|-.+++. ..+=++.+++|.. .|+|++|+++..
T Consensus 113 h~eTrFikvnae--~~PFlv~kL~IkV-LP~v~l~k~g~~ 149 (211)
T KOG1672|consen 113 HVETRFIKVNAE--KAPFLVTKLNIKV-LPTVALFKNGKT 149 (211)
T ss_pred cccceEEEEecc--cCceeeeeeeeeE-eeeEEEEEcCEE
Confidence 345677777665 6778999999997 999999998543
No 468
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=20.52 E-value=1.1e+02 Score=24.32 Aligned_cols=35 Identities=11% Similarity=0.321 Sum_probs=23.0
Q ss_pred CCceEEEEeCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770 312 DKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNN 347 (554)
Q Consensus 312 ~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~ 347 (554)
..|+|+++..+.. ....+...+++.+.|.+|++.+
T Consensus 41 ~~P~L~l~d~~g~-~~E~i~i~~w~~d~i~efL~~k 75 (78)
T PF08806_consen 41 APPELVLLDEDGE-EVERINIEKWKTDEIEEFLNEK 75 (78)
T ss_dssp ---EEEEE-SSS---SEEEE-SSSSHCHHHHHHHHH
T ss_pred CCCEEEEEcCCCC-EEEEEEcccCCHHHHHHHHHHh
Confidence 4799999987554 3346888999999999999865
No 469
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=20.24 E-value=1.7e+02 Score=25.69 Aligned_cols=27 Identities=15% Similarity=0.389 Sum_probs=22.5
Q ss_pred EecCcHHHHHHhCCcCCCCcceeccCCe
Q psy16770 187 HVHNEQGLARRLGVGSQLPQIALLTDGR 214 (554)
Q Consensus 187 d~~~~~~l~~~~~v~~~~Pti~~~~~g~ 214 (554)
+..-++.+-++|+|+. +|++++.+++.
T Consensus 56 ~v~IdP~lF~~f~I~~-VPa~V~~~~~~ 82 (130)
T TIGR02742 56 GVQIDPQWFKQFDITA-VPAFVVVKDGL 82 (130)
T ss_pred cEEEChHHHhhcCceE-cCEEEEECCCC
Confidence 3345899999999996 99999997764
No 470
>PRK02955 small acid-soluble spore protein SspI; Provisional
Probab=20.16 E-value=1.3e+02 Score=23.10 Aligned_cols=39 Identities=13% Similarity=0.172 Sum_probs=25.7
Q ss_pred cchhhHHHHHHHHhhh-cCCCCCccccccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccc
Q psy16770 460 YNTTKDRLDAGLRSLV-NDPYNNLLYDTALKEISDEYIQSLGVRIFNRIFMHIEMAQQSLSR 520 (554)
Q Consensus 460 ~~~t~e~l~~fl~~~~-~g~~~~~~~~~~lp~~~de~~~~~~~r~~~~~~~~~~~~~~~~~~ 520 (554)
.+.|++.|+++|.+-+ +|.++ .||- + -.++|.+|.|.+-
T Consensus 14 ~g~s~eel~~~I~daIqsgEEk------~LPG--------L--------GVlFE~~W~~~~~ 53 (68)
T PRK02955 14 SGNSKEELEGTIVDAIQSGEEK------MLPG--------L--------GVLFEVIWKNADE 53 (68)
T ss_pred cCCCHHHHHHHHHHHHhccchh------cCCc--------c--------hhHHHHHHHhcCH
Confidence 3568999999988765 46654 3552 2 1267888887653
No 471
>PRK11875 psbT photosystem II reaction center protein T; Reviewed
Probab=20.10 E-value=1.5e+02 Score=18.93 Aligned_cols=16 Identities=19% Similarity=0.536 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHH
Q psy16770 528 SLIFTVIIIVVLAMIM 543 (554)
Q Consensus 528 s~~~~~~~i~~~~~~~ 543 (554)
++++|++++..+|.+.
T Consensus 3 al~Ytfll~~tlgiiF 18 (31)
T PRK11875 3 SFAYILILTLALVTLF 18 (31)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4678888887777765
No 472
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=20.07 E-value=1.1e+02 Score=22.04 Aligned_cols=27 Identities=15% Similarity=0.410 Sum_probs=17.9
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHhhc
Q psy16770 521 QHILPAVSLIFTVIIIVVLAMIMNHYM 547 (554)
Q Consensus 521 ~~~~~~~s~~~~~~~i~~~~~~~~~~~ 547 (554)
..++..+.=+..+++|+++||++.-+.
T Consensus 9 ~~ii~~lP~iv~AilIl~vG~~va~~v 35 (53)
T PF05552_consen 9 DQIIAYLPNIVGAILILIVGWWVAKFV 35 (53)
T ss_dssp ----GGHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555667888899999999985544
Done!