RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16770
(554 letters)
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain,
endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Length = 210
Score = 192 bits (490), Expect = 2e-58
Identities = 54/223 (24%), Positives = 93/223 (41%), Gaps = 20/223 (8%)
Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAERRK 78
+ Y LGV +TAS +EIR+ +K+L ++ HPDKN N+P A FL++ AY +L D + RK
Sbjct: 3 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 62
Query: 79 QYDLFGTTDGFSGQDSASRNFHNHMYNPFDDVFSEGFNFPFEEHDISLFHKLSTTHWNFE 138
+YD +G G Y + + F ++ +I +
Sbjct: 63 KYDKYG-EKGLEDN-------QGGQYESWSY-YRYDFGIYDDDPEIITLERREFDAAVNS 113
Query: 139 KNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRL 198
+ FYS C C + P +++ E+ L + V+ +++ L R
Sbjct: 114 G--------ELWFVNFYSPGCSHCHDLAPTWREFAKEVDGL-LRIGAVNCGDDRMLCRMK 164
Query: 199 GVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYKLI 241
GV S P + + G + S + +V F + +
Sbjct: 165 GVNS-YPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHVRSTVT 206
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 165 bits (418), Expect = 1e-43
Identities = 67/399 (16%), Positives = 131/399 (32%), Gaps = 28/399 (7%)
Query: 12 FINCAVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNI 70
I + Y LGV +TAS +EIR+ +K+L ++ HPDKN N+P A FL++ AY +
Sbjct: 14 HIEGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEV 73
Query: 71 LSDAERRKQYDLFGTTDGFSGQDSASRNFHNHMYNPFDDVFSEGFNFPFEEHDISLFHKL 130
L D + RK+YD +G Q ++ + Y+ + +
Sbjct: 74 LKDEDLRKKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLERREFDAAVNS- 132
Query: 131 STTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN 190
+ FYS + P +++ E+ L + V+ +
Sbjct: 133 ----------------GELWFVNFYSPGSSHSHDLAPTWREFAKEVDGL-LRIGAVNCGD 175
Query: 191 EQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYKLIVPLSATNVD 250
++ L R GV S P + + G + S + +V F + + LS N
Sbjct: 176 DRMLCRMKGVNS-YPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHVR-STVTELSTGNFV 233
Query: 251 AFLDNWREDNKVHALLF---QRSLPVRLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRF 307
++ + F L + + G + D + S+ +
Sbjct: 234 NAIETAFAAGVGWLITFCSKGEDCLTSQTRLRLSGMLDGLVNVGWV--DCDAQDSLCKSL 291
Query: 308 KVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRISSQSMLDAVCPV 367
+ + S + + + + L + S + L+
Sbjct: 292 DTTASTTAYFPPGATLNDREKSSVLFLNSLDAKEIYMEIIHNLPDFELLSANQLEDRLAH 351
Query: 368 KKLCVVLFSEDSPEHDASRHTLRRFAQESRFVHNNIAFM 406
+ V +A+ L++ + H +
Sbjct: 352 HRWLVFFHFGK--NENANDPELKKLKTLLKNEHIQVVRF 388
Score = 83.7 bits (206), Expect = 4e-17
Identities = 38/285 (13%), Positives = 85/285 (29%), Gaps = 23/285 (8%)
Query: 103 MYNPFDDVFSEGFNFPFEEHDISLF--HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCF 160
++ E + +DI F +++ P S P L+ F++ W
Sbjct: 409 VFKGQGTKEYEIHHGKKILYDILAFAKESVNSHVTTLGPQNFPASDKEPWLVDFFAPWSP 468
Query: 161 ACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKE 220
+ P +K L + T+ +GL + + P + ++
Sbjct: 469 PSRALLPELRKASTLLYG-QLKVGTLDCTIHEGLCNMYNIQA-YPTTVVFNQSSIHEYEG 526
Query: 221 PSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWREDNKVHALLF-------QRSLPV 273
S ++++EF ++ L+ + + + + D + Q +P
Sbjct: 527 H-HSAEQILEFIEDLRNPSVVS-LTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPE 584
Query: 274 RLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRP---SASI 330
+ A I G + D S + V + + + + +
Sbjct: 585 ---WKRMARTLTGLINVGSV--DCGQYHSFCTQENVQR-YPEIRFYPQKSSKAYQYHSYN 638
Query: 331 TMNSIPVPTLQDITDNNPYLTLPRISSQSMLDAVCPVKKLCVVLF 375
N P ++ ++ Q+ + V K VV F
Sbjct: 639 GWNRDAYSLRSWGLGFLPQASID-LTPQTFNEKVLQGKTHWVVDF 682
Score = 42.4 bits (99), Expect = 3e-04
Identities = 19/151 (12%), Positives = 48/151 (31%), Gaps = 21/151 (13%)
Query: 106 PFDDVFSEGFNFPFEEHDISLFHKLSTTHWNFEKNYIPKS---------------YTTPH 150
P + + + ++ H + +++ + + ++ ++P++ T
Sbjct: 619 PEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGLGFLPQASIDLTPQTFNEKVLQGKTHW 678
Query: 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALL 210
++ FY+ W P F+ L + V V ++ G+ + P + L
Sbjct: 679 VVDFYAPWSGPSQNFAPEFELLARMIKG-KVRAGKVDCQAYPQTCQKAGIKA-YPSVKLY 736
Query: 211 TDGRTSFFK----EPSFSVQKMVEFFRLKLP 237
R S + + KL
Sbjct: 737 QYERAKKSIWEEQINSRDAKTIAALIYGKLE 767
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics,
PSI-2, protein STRU initiative; 2.90A {Klebsiella
pneumoniae subsp} PDB: 2kqx_A
Length = 329
Score = 123 bits (310), Expect = 2e-31
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 79
D Y LGV T L+ I+ Y+RL ++HPD + + A+ KF L EA+ +L D +RR +
Sbjct: 29 DYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAE 88
Query: 80 YDLFGTTDGFSGQDSASRNFHNHMYNP-FDDVFSEGF 115
YD G + FDD+FS F
Sbjct: 89 YDQLWQHRNDPGFGRQRQTHEQSYSQQDFDDIFSSMF 125
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics,
molecular chaperone, NPPSFA; NMR {Mus musculus}
Length = 88
Score = 108 bits (271), Expect = 9e-29
Identities = 39/72 (54%), Positives = 53/72 (73%), Gaps = 1/72 (1%)
Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 79
DPY LGV RTAS +I+K YK+L EWHPDKN DP A+++F+Q+++AY ILS+ E+R
Sbjct: 18 DPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTN 77
Query: 80 YDLFGTTDGFSG 91
YD +G + SG
Sbjct: 78 YDHYG-SGPSSG 88
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 77
Score = 106 bits (267), Expect = 3e-28
Identities = 33/73 (45%), Positives = 52/73 (71%), Gaps = 1/73 (1%)
Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 79
D Y+TLG+ R AS +EI++ Y+R + +HPDKN +P A+EKF ++ EAY++LSD +R+
Sbjct: 4 DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREI 63
Query: 80 YDLFGTTDGFSGQ 92
+D +G +G G
Sbjct: 64 FDRYG-EEGLKGS 75
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR
{Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Length = 103
Score = 105 bits (264), Expect = 2e-27
Identities = 39/97 (40%), Positives = 56/97 (57%), Gaps = 4/97 (4%)
Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAERRK 78
D YE LGV +TA +EIRK YKRL +++HPD+N D A+ KF ++ EAY +L+D+++R
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 79 QYDLFGTTDGFSGQDSASRNFHNHMYNPFDDVFSEGF 115
YD +G F F F D+F + F
Sbjct: 64 AYDQYG-HAAFEQGGMGGGGFGGGA--DFSDIFGDVF 97
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 78
Score = 104 bits (262), Expect = 2e-27
Identities = 36/72 (50%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 79
D YE LGV R AS ++++K Y+RL +++HPDKN+ P A E F + AY +LS+ E+RKQ
Sbjct: 8 DYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQ 67
Query: 80 YDLFGTTDGFSG 91
YD FG + SG
Sbjct: 68 YDQFG-SGPSSG 78
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon,
chaperone; NMR {Homo sapiens}
Length = 99
Score = 104 bits (262), Expect = 3e-27
Identities = 37/105 (35%), Positives = 54/105 (51%), Gaps = 10/105 (9%)
Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN--NDPTAQEKFLQLTEAYNILSDAERR 77
YE L VPR+AS +I+K Y+R ++WHPDKN N A++KF ++ EAY +LSD +R
Sbjct: 3 SYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKR 62
Query: 78 KQYDLFGTTDGFSGQDSASRNFHNHMYNPFDDVFSEGFNFPFEEH 122
+ YD +G +G +G + P G H
Sbjct: 63 EIYDRYG-REGLTGTGTGPSRAEAGSGGP-------GLEHHHHHH 99
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 109
Score = 104 bits (261), Expect = 4e-27
Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 9/96 (9%)
Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAERRK 78
Y LG+ + A+ +I+K+Y++L +++HPDKN ++P A +KF ++ A+ IL+DA +R
Sbjct: 18 SLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRN 77
Query: 79 QYDLFGTTDGFSGQDSASRNFHNHMYNPFDDVFSEG 114
YD +G + G + + F G
Sbjct: 78 IYDKYG-SLGLYVAEQFG-------EENVNTYFVSG 105
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 103 bits (258), Expect = 6e-27
Identities = 40/73 (54%), Positives = 52/73 (71%), Gaps = 2/73 (2%)
Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAERRK 78
D Y+ LGVPR AS +EI+K Y +L ++HPD N +DP A+EKF QL EAY +LSD +RK
Sbjct: 8 DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67
Query: 79 QYDLFGTTDGFSG 91
QYD +G + SG
Sbjct: 68 QYDAYG-SGPSSG 79
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain,
all helix protein, chaperone, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 103 bits (258), Expect = 8e-27
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAERRK 78
Y+ LGVP TA+ +I+ Y R +HPD+N A E+F ++++AY +L A R+
Sbjct: 18 ALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRR 77
Query: 79 QYDLFGTTDGFSGQDSASRNF 99
+YD + S
Sbjct: 78 KYDRGL-LSDEDLRGPGSGPS 97
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 112
Score = 103 bits (258), Expect = 1e-26
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAERRK 78
D Y LG +S+++I +K +E HPDK+ +P A E F +L +A IL++ E R
Sbjct: 21 DYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRA 80
Query: 79 QYDLFG---TTDGFSGQDSASRNFHN 101
+YD + + F ++ + +
Sbjct: 81 RYDHWRRSQMSMPFQQWEALNDSVKT 106
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 88
Score = 101 bits (255), Expect = 2e-26
Identities = 32/65 (49%), Positives = 47/65 (72%)
Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 79
Y+ LGVP++AS ++I+K + +L +++HPDKN P A+ KF ++ EAY LSDA RRK+
Sbjct: 8 SYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKE 67
Query: 80 YDLFG 84
YD G
Sbjct: 68 YDTLG 72
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 82
Score = 101 bits (254), Expect = 2e-26
Identities = 36/74 (48%), Positives = 50/74 (67%), Gaps = 3/74 (4%)
Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN--NDPTAQEKFLQLTEAYNILSDAERR 77
D YE L VPR AS + I+K Y++L ++WHPDKN N A+ +F Q+ EAY +LSDA++R
Sbjct: 10 DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKR 69
Query: 78 KQYDLFGTTDGFSG 91
YD +G + SG
Sbjct: 70 DIYDRYG-SGPSSG 82
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain,
chaperone; NMR {Homo sapiens}
Length = 155
Score = 104 bits (260), Expect = 2e-26
Identities = 22/108 (20%), Positives = 49/108 (45%), Gaps = 13/108 (12%)
Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPT-------AQEKFLQLTEAYNILS 72
D Y LG +A++ ++++ Y++L++ +HPDK + +KF+++ +A+ IL
Sbjct: 11 DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILG 70
Query: 73 DAERRKQYDLFGTTDGFSGQDSASRNFHNHMYNPFDDVFSEGFNFPFE 120
+ E +++YDL D +++ + F
Sbjct: 71 NEETKREYDLQRCEDDLRNVGPVDAQV------YLEEMSWNEGDHSFY 112
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain,
helix-turn-helix motif, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 92
Score = 101 bits (253), Expect = 4e-26
Identities = 34/79 (43%), Positives = 51/79 (64%), Gaps = 3/79 (3%)
Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN--NDPTAQEKFLQLTEAYNILSDAERR 77
+ YE LGV +AS ++I+K Y++L + WHPDKN N A++KF ++EAY +LSD+++R
Sbjct: 10 NYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKR 69
Query: 78 KQYDLFGTTDGFSGQDSAS 96
YD G D + AS
Sbjct: 70 SLYDRAG-CDSWRAGGGAS 87
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, chaperone; NMR {Mus musculus} SCOP:
a.2.3.1
Length = 94
Score = 96.7 bits (241), Expect = 2e-24
Identities = 23/79 (29%), Positives = 46/79 (58%), Gaps = 8/79 (10%)
Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNND-------PTAQEKFLQLTEAYNILS 72
D Y LG +A++ ++++ Y++L++ +HPDK + +KF+++ +A+ IL
Sbjct: 17 DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG 76
Query: 73 DAERRKQYDLFGTTDGFSG 91
+ E +K+YDL + SG
Sbjct: 77 NEETKKKYDLQR-SGPSSG 94
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5,
structural genomics, PSI-2, protein structure
initiative; 1.25A {Saccharomyces cerevisiae}
Length = 92
Score = 95.5 bits (238), Expect = 4e-24
Identities = 25/65 (38%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 79
Y+ LGV +A+ QE++K Y++ +++HPDK EKF +++EA+ IL+D ++R+
Sbjct: 9 KLYDLLGVSPSANEQELKKGYRKAALKYHPDKP--TGDTEKFKEISEAFEILNDPQKREI 66
Query: 80 YDLFG 84
YD +G
Sbjct: 67 YDQYG 71
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone,
APC90013.2, structural genomics, protein structure
initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Length = 73
Score = 95.0 bits (237), Expect = 4e-24
Identities = 27/65 (41%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 79
Y+ LGV AS E++K Y+++ +++HPDKN P E+F Q+++AY +LSD ++R+
Sbjct: 9 GYYDVLGVKPDASDNELKKAYRKMALKFHPDKN--PDGAEQFKQISQAYEVLSDEKKRQI 66
Query: 80 YDLFG 84
YD G
Sbjct: 67 YDQGG 71
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated
protein RAP1, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 90
Score = 92.9 bits (231), Expect = 3e-23
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 79
D ++ LGV AS E+ K Y++L V HPDK P +++ F + A L +
Sbjct: 28 DSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGP 87
Query: 80 YD 81
Sbjct: 88 SS 89
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural
genomics, PSI-2, Pro structure initiative; 1.68A
{Caenorhabditis elegans}
Length = 109
Score = 93.6 bits (233), Expect = 3e-23
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 7/96 (7%)
Query: 20 DPYETLGVPRTA-SLQEIRKNYKRLVVEWHPDKNNDP----TAQEKFLQLTEAYNILSDA 74
+ Y+ L V R Q++ K Y+ L + HPD+ + A+E+F + AY L D
Sbjct: 16 NCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDD 75
Query: 75 ERRKQYDLFGTTDGFSGQDSASRNFHNHMYNPFDDV 110
E + YD + + + + P D+
Sbjct: 76 EAKTNYDYYL-DHPDQRFYNYYQYYRLRA-APKVDL 109
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein;
3.20A {Simian virus 40} SCOP: a.2.3.1
Length = 114
Score = 93.7 bits (233), Expect = 4e-23
Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 7/108 (6%)
Query: 20 DPYETLGVPRTA--SLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERR 77
+ LG+ R+A ++ +RK Y + E+HPDK D EK ++ Y + D +
Sbjct: 9 QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE---EKMKKMNTLYKKMEDGVKY 65
Query: 78 KQYDLFGTTDGFSGQDSASRNFHNHMYNPF--DDVFSEGFNFPFEEHD 123
FG + + + +N F +++F ++
Sbjct: 66 AHQPDFGGFWDATEIPTYGTDEWEQWWNAFNEENLFCSEEMPSSDDEA 113
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase
regulat protein complex; 3.10A {Simian virus 40} PDB:
2pkg_C
Length = 174
Score = 95.4 bits (237), Expect = 4e-23
Identities = 32/148 (21%), Positives = 56/148 (37%), Gaps = 21/148 (14%)
Query: 20 DPYETLGVPRTA--SLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERR 77
+ LG+ R+A ++ +RK Y + E+HPDK D EK ++ Y + D +
Sbjct: 12 QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE---EKMKKMNTLYKKMEDGVKY 68
Query: 78 KQYDLFGTTDGFSGQDSASRNFHNHMYNPFDDVFSEGFNFPFEEHDIS---LFHKLSTTH 134
FG + ++S N D ++ + + ++ + L L H
Sbjct: 69 AHQPDFGGFWDATEVFASSLNPG------VDAIYCKQWPECVKKMSTNCICLLCLLRMKH 122
Query: 135 WNFEKNYIPKSYTTPHLILFYSDWCFAC 162
N K Y L+ +CF C
Sbjct: 123 EN------RKLYRKDPLVWVDC-YCFDC 143
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 88
Score = 84.4 bits (209), Expect = 3e-20
Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 6/75 (8%)
Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN--NDPTAQEKFLQLTEAYNILSDAERR 77
+ + E +K +RL ++WHPDKN N A E F L N L E++
Sbjct: 17 EVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRL---EKQ 73
Query: 78 KQYDLFGTTDGFSGQ 92
D
Sbjct: 74 AFLDQNA-DRASRRT 87
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of
helices, viral protein; NMR {Murine polyomavirus} SCOP:
a.2.3.1
Length = 79
Score = 71.5 bits (175), Expect = 9e-16
Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 5/72 (6%)
Query: 18 SLDPYETLGVPRTA--SLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAE 75
E L +PR +++ YK+ + HPDK +L +
Sbjct: 10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSH---ALMQELNSLWGTFKTEV 66
Query: 76 RRKQYDLFGTTD 87
+ +L GT
Sbjct: 67 YNLRMNLGGTGF 78
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 74.7 bits (184), Expect = 2e-14
Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPT----AQEKFLQLTEAYNILSDAE 75
D Y+ LGV R A QEI K Y++L ++WHPD + A++KF+ + A +LSD E
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 76 RRKQYD 81
RK++D
Sbjct: 443 MRKKFD 448
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304,
center for structural genomics of infectious diseases,
CSGI; 2.15A {Vibrio cholerae}
Length = 174
Score = 64.6 bits (157), Expect = 2e-12
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 18 SLDPYETLGVPRTASL--QEIRKNYKRLVVEWHPDKNNDPTAQEK------FLQLTEAYN 69
+++ +E G+P L + ++ L +HPD + +++ Q+ +AY
Sbjct: 3 AMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQ 62
Query: 70 ILSDAERRKQYDL 82
L D RR +Y L
Sbjct: 63 TLKDPLRRAEYLL 75
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A
{Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Length = 171
Score = 64.2 bits (156), Expect = 3e-12
Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
Query: 19 LDPYETLGVPRTASL--QEIRKNYKRLVVEWHPDKNNDPTAQEK------FLQLTEAYNI 70
+D + G+P L Q + ++ L ++HPDK + E+ + +A+
Sbjct: 1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQT 60
Query: 71 LSDAERRKQYDL 82
L R +Y L
Sbjct: 61 LRHPLMRAEYLL 72
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP:
a.2.3.1 PDB: 1xi5_J
Length = 182
Score = 61.8 bits (149), Expect = 3e-11
Identities = 13/63 (20%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 22 YETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPT----AQEKFLQLTEAYNILSDAERR 77
++ +G+ + ++++K Y++ V+ HPDK A+ F++L +A++ + ++
Sbjct: 120 WKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQK 179
Query: 78 KQY 80
Y
Sbjct: 180 PLY 182
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 63.7 bits (154), Expect = 1e-10
Identities = 84/589 (14%), Positives = 159/589 (26%), Gaps = 190/589 (32%)
Query: 36 IRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTDGFSGQDSA 95
+R NYK L+ + P+ T Y +R + L+ F+ + +
Sbjct: 87 LRINYKFLMSPIK-TEQRQPSMM------TRMYI----EQRDR---LYNDNQVFA-KYNV 131
Query: 96 SR-----NFHNHMYN--PFDDVFSEGF--------------------NFPFEEHDISLFH 128
SR + P +V +G F+
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK-------- 183
Query: 129 KLSTTHW-NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVH 187
W N + P++ L Q++P + D S + +
Sbjct: 184 ----IFWLNLKNCNSPETVLEMLQKL--------LYQIDPNWTSRSDHSSNI-----KLR 226
Query: 188 VHNEQGLARRLGVGSQLPQIALLT-----DGRTSFFKEPSFSVQ---------KMVEFFR 233
+H+ Q RRL LL + + + +F++ K V F
Sbjct: 227 IHSIQAELRRLLKSKPYEN-CLLVLLNVQNAKA--WN--AFNLSCKILLTTRFKQVTDFL 281
Query: 234 LKLPYKLIV------PLSATNVDAFLDNW---------REDNKVHALL------FQRSLP 272
I L+ V + L + RE + R
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 273 VRLRYL--INAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASI 330
+N K T I + + + + F L +F
Sbjct: 342 ATWDNWKHVNCDKLTTII---ESSLNVLEPAEYRKMFD------RLSVFPPSAH------ 386
Query: 331 TMNSIPVPTLQ----DITDNNPYLTLPRISSQSMLDAVCPVKKLCVVLFSEDSPEHDASR 386
IP L D+ ++ + + ++ S+++ + E S
Sbjct: 387 ----IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE--------------KQPKESTISI 428
Query: 387 HTL----RRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPEDSSEISLHIA-------- 434
++ + + +H +I Y + + L P HI
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFDS--DDLIPPYLDQYFYSHIGHHLKNIEH 486
Query: 435 ----AMWRMDY-------KKIKY---GW-LLGDAVDDWKDYNTTKDRLDAGLRSLVNDP- 478
++RM + +KI++ W G ++ + K + NDP
Sbjct: 487 PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI------CDNDPK 540
Query: 479 YNNLLYD--TALKEISDEYIQSLGVRIFNRIFMH-----IEMAQQSLSR 520
Y L+ L +I + I S + M E A + + R
Sbjct: 541 YERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 49.1 bits (116), Expect = 3e-06
Identities = 77/503 (15%), Positives = 154/503 (30%), Gaps = 114/503 (22%)
Query: 100 HNHMYNPFDDVFSEGFNFPFEEHDISLFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWC 159
H + Y VF + F F+ D+ K + + + K + L LF W
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF---WT 70
Query: 160 FACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFK 219
+ E + +K ++E+ + F + EQ + + Q L + F K
Sbjct: 71 L-LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ-RQPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 220 EPSFSV--QKMVEFFRLKL----PYKLIV---------------PLSATNVDAFLDN--- 255
++V + R L P K ++ + V +D
Sbjct: 129 ---YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 256 W---REDNKVHALL-FQRSLPVRLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQR-FKVP 310
W + N +L + L ++ + ++ I + +R K
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS----NIKLRIHSIQAELRRLLKSK 241
Query: 311 GDKDSLLIFKEDKDRPSASITMNSIPVPTL-----QDITDNNPYLTLPRISSQSMLDAVC 365
++ LL+ ++ + + ++ L + +TD T IS +
Sbjct: 242 PYENCLLVLLNVQN--AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 366 PVKKLCVVLFS-------EDSPEHDASRHTLRRFAQESRFVHNNIA----FMYVFIEKQP 414
P + L +D P + RR + + + + +A + +V +K
Sbjct: 300 PDEVK--SLLLKYLDCRPQDLPR-EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
Query: 415 E----FVNALTSPE------------DSSEISLH-IAAMWR-MDY--------KKIKYGW 448
+N L E S+ I ++ +W + K KY
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416
Query: 449 LLGDAVDDWKDYNTT----------KDRLDAGL-RSLVNDPYN---NLLYDTALKEISDE 494
+ K+ + K + L RS+V D YN D + D+
Sbjct: 417 VEK----QPKESTISIPSIYLELKVKLENEYALHRSIV-DHYNIPKTFDSDDLIPPYLDQ 471
Query: 495 YIQSLGVRIFNRIFMHIEMAQQS 517
Y ++ I H++ +
Sbjct: 472 Y-------FYSHIGHHLKNIEHP 487
Score = 42.1 bits (98), Expect = 4e-04
Identities = 61/423 (14%), Positives = 109/423 (25%), Gaps = 185/423 (43%)
Query: 11 LFINCAVSLDPYETLGV-PRTASL--QEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEA 67
+++C P E L PR S+ + IR W K+ + ++ +
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT----WDNWKHVNCDKLTTIIESS-- 362
Query: 68 YNILSDAERRKQYDLFGTTDGFSGQDSASRNFHNHMYNPFDDVFSEGFNFP--------- 118
N+L AE RK +D VF + P
Sbjct: 363 LNVLEPAEYRKMFDRLS-------------------------VFPPSAHIPTILLSLIWF 397
Query: 119 -----FEEHDISLFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLM 173
++ HK S EK + + P + L KL
Sbjct: 398 DVIKSDVMVVVNKLHKYSL----VEKQPKESTISIPSIYLELK-------------VKLE 440
Query: 174 DELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFR 233
+E + +H + +V+ +
Sbjct: 441 NE--------YALH--------------------------------------RSIVDHYN 454
Query: 234 LKLPYKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAFKHRTTIVFGVI 293
+ + D + + D Y + H I
Sbjct: 455 IPKTFDS---------DDLIPPY-LDQ----------------YF---YSH--------I 477
Query: 294 VY-----DQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPV-PTLQD----- 342
+ + + ++F+ + D F E K R ++ S + TLQ
Sbjct: 478 GHHLKNIEHPERMTLFRMVFL--D----FRFLEQKIRHDSTAWNASGSILNTLQQLKFYK 531
Query: 343 --ITDNNPYLT---------LPRISSQSMLDAVCPVKKLCVV---LFSEDSPEH-DASRH 387
I DN+P LP+I + K ++ L +ED +A +
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIEENLICS-----KYTDLLRIALMAEDEAIFEEAHKQ 586
Query: 388 TLR 390
R
Sbjct: 587 VQR 589
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14;
DNAJ-fold, chaperone, protein transport; HET: FLC;
2.00A {Saccharomyces cerevisiae}
Length = 71
Score = 55.8 bits (135), Expect = 2e-10
Identities = 12/58 (20%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 22 YETLGV-PRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRK 78
+ L + T + +++++ ++++++ HPDK P K + EA + L K
Sbjct: 17 LQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATK---INEAKDFLEKRGISK 71
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP:
c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Length = 504
Score = 61.8 bits (149), Expect = 3e-10
Identities = 41/363 (11%), Positives = 91/363 (25%), Gaps = 28/363 (7%)
Query: 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALL 210
L F++ WC C + P + K + L + + Q L + P + +
Sbjct: 35 LAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNI-PGFPSLKIF 93
Query: 211 TDGRTSFFKEPSF--SVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWREDNKVHALLFQ 268
+ + + + + +V+F + + V A E ++
Sbjct: 94 KNSDVNNSIDYEGPRTAEAIVQFMIKQSQPAVAVVADLPAYLAN-----ETFVTPVIVQS 148
Query: 269 RSLPVRLR--YLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRP 326
+ + A KH F +D + K D
Sbjct: 149 GKIDADFNATFYSMANKHFNDYDFVSAENADDDFKLSIYLPSAMDEPVVYNGKKADIA-- 206
Query: 327 SASITMNSIPVPTLQDITDNNPYLTLPRISSQSMLDAVCPVKKLCVVLFSEDSPEHDASR 386
+ I LF D E + +
Sbjct: 207 ---------DADVFEKWLQVEALPYFGEIDGSV-FAQYVESGLPLGYLFYNDEEELEEYK 256
Query: 387 HTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPEDSSEISLHIAAMWRMDYKKIKY 446
A+++R + F+ + K L E ++H D K
Sbjct: 257 PLFTELAKKNR---GLMNFVSIDARKFGRHAGNLNMKEQFPLFAIHD---MTEDLKYGLP 310
Query: 447 GWLLGDAVDDWKDYNTTKDRLDAGLRSLVNDPYNNLLYDTALKEISDEYIQSLGVRIFNR 506
+ +++ ++ + + ++ + E D + L + +
Sbjct: 311 QLSEEAFDELSDKIVLESKAIESLVKDFLKGDASPIVKSQEIFENQDSSVFQLVGKNHDE 370
Query: 507 IFM 509
I
Sbjct: 371 IVN 373
Score = 35.6 bits (81), Expect = 0.042
Identities = 22/149 (14%), Positives = 48/149 (32%), Gaps = 7/149 (4%)
Query: 33 LQEIRKNYKRLVVEWHPDKNNDPTAQEKF-LQLTEAYNILSDAERRKQYDLFGTTDGFSG 91
E+ K + L+ D ++ + D +Y L ++
Sbjct: 259 FTELAKKNRGLMNFVSIDARKFGRHAGNLNMKEQFPLFAIHDMTEDLKYGLPQLSEEAFD 318
Query: 92 QDSASRNFHNHMYNPFDDVFSEGFNFPFEEHDISLFHKLST----THWNFEKNYIPKSYT 147
+ S + F +G P + ++ S+ N ++
Sbjct: 319 ELSDKIVLESKAIESLVKDFLKGDASPIVKSQEIFENQDSSVFQLVGKNHDEIVNDPKKD 378
Query: 148 TPHLILFYSDWCFACLQVEPIFKKLMDEL 176
L+L+Y+ WC C ++ P +++L D
Sbjct: 379 V--LVLYYAPWCGHCKRLAPTYQELADTY 405
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural
genomics medical relev protein structure initiative,
PSI-2; 3.00A {Homo sapiens}
Length = 207
Score = 59.0 bits (142), Expect = 3e-10
Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 8/73 (10%)
Query: 18 SLDPYETLGVPRT--ASLQEIRKNYKRLVVEWHPDKNNDPTAQEK------FLQLTEAYN 69
+ D + + R+ +++ Y++L HPD + + EK + +AY
Sbjct: 42 TRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYK 101
Query: 70 ILSDAERRKQYDL 82
L R Y L
Sbjct: 102 TLLAPLSRGLYLL 114
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum,
glycoprotein, immunoglobulin domain, microsome, protein
disulfide isomerase, thioredoxin-like FO like domain;
HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Length = 481
Score = 58.7 bits (141), Expect = 3e-09
Identities = 36/268 (13%), Positives = 76/268 (28%), Gaps = 18/268 (6%)
Query: 133 THWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQ 192
T NFE L+ F++ WC ++ P ++ L V V
Sbjct: 7 TDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKG-IVPLAKVDCTANT 65
Query: 193 GLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYKLIVPLSATNVDAF 252
+ GV S P + + DG + + + +V + + + + F
Sbjct: 66 NTCNKYGV-SGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQAGPASVPLRTEEEFKKF 124
Query: 253 LDNWREDNKVHALLFQRSL--PVRLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVP 310
+ D + F +L A R F + S+ +
Sbjct: 125 I----SDKDASIVGFFDDSFSEAHSEFLKAASNLRDNYRFAHT-----NVESLVNEYDDN 175
Query: 311 GDKDSLL---IFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRISSQSMLDAVCPV 367
G+ L + + + T + ++ N + P ++ +
Sbjct: 176 GEGIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGICPHMTEDNKDLIQG-- 233
Query: 368 KKLCVVLFSEDSPEHDASRHTLRRFAQE 395
K L + + D ++ + R
Sbjct: 234 KDLLIAYYDVDYEKNAKGSNYWRNRVMM 261
Score = 32.9 bits (74), Expect = 0.31
Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Query: 107 FDDVFSEGFNFPFEEHDISLFHKLSTTHWNFEKNYIPKSYTTPH--LILFYSDWCFACLQ 164
F + +G + + + +N+ LI FY+ WC C
Sbjct: 328 FLQDYFDGNLKRYLKSEPIPESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKN 387
Query: 165 VEPIFKKLMDELS 177
+EP +K+L ++LS
Sbjct: 388 LEPKYKELGEKLS 400
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform;
glycoprotein, calcium-binding, muscle protein, metal
binding protein; 2.40A {Canis lupus familiaris} PDB:
2vaf_A
Length = 350
Score = 57.4 bits (138), Expect = 4e-09
Identities = 50/318 (15%), Positives = 103/318 (32%), Gaps = 21/318 (6%)
Query: 138 EKNYIPKSYTTPHLILFYSDWCFACLQVEPIF-------KKLMDELSPLGVGFFTVHVHN 190
EKN+ L L+Y + + + F + + L +GF V
Sbjct: 18 EKNFKQVLKKYDVLCLYYHESVSSDKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKK 77
Query: 191 EQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYKLIVPLSATNVD 250
E LA++LG + + +L RT F F+ +VEF + + + S V
Sbjct: 78 EAKLAKKLGFDEE-GSLYVLKGDRTIEFDGE-FAADVLVEFLLDLIEDPVEIINSKLEVQ 135
Query: 251 AFLDNWREDNKVHALLFQRSLPVRLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVP 310
AF + K+ + A + I F V ++ +
Sbjct: 136 AFERI-EDQIKLIGFFKSEESEYYKAFEEAAEHFQPYIKFFATF-----DKGVAKKLSLK 189
Query: 311 GDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRISSQSMLDAVC-PVKK 369
++ + F E +I L + + TL R+ + M + +
Sbjct: 190 MNE---VDFYEPFMDEPIAIPDKPYTEEELVEFVKEHQRPTLRRLRPEDMFETWEDDLNG 246
Query: 370 LCVVLF-SEDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPEDSSE 428
+ +V F P+ L++ A+++ + +++ +++ + P V
Sbjct: 247 IHIVAFAERSDPDGYEFLEILKQVARDNTD-NPDLSIVWIDPDDFPLLVAYWEKTFKIDL 305
Query: 429 ISLHIAAMWRMDYKKIKY 446
I + D +
Sbjct: 306 FKPQIGVVNVTDADSVWM 323
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Length = 181
Score = 55.0 bits (132), Expect = 5e-09
Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 9/80 (11%)
Query: 12 FINCAVSLDPYETLGVPR-------TASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQL 64
+ + YE T +RK Y++L + HPD E+ L
Sbjct: 4 LVQRRFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMA--QQGSEQSSTL 61
Query: 65 TEAYNILSDAERRKQYDLFG 84
+AY+ L D RR QY L
Sbjct: 62 NQAYHTLKDPLRRSQYMLKL 81
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus
cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A
Length = 367
Score = 54.2 bits (130), Expect = 4e-08
Identities = 45/304 (14%), Positives = 105/304 (34%), Gaps = 20/304 (6%)
Query: 151 LILFYSDWCFACLQV------EPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQL 204
+L++ E I + L GVGF V + +A++LG+ ++
Sbjct: 34 ALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGL-TEE 92
Query: 205 PQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWREDNKVHA 264
I + + + FS +VEF L + + + AF + ++ K+
Sbjct: 93 DSIYVFKEDEVIEYDGE-FSADTLVEFLLDVLEDPVELIEGERELQAFENI-EDEIKLIG 150
Query: 265 LLFQRSLPVRLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKD 324
+ + A + I F S V ++ + + + ++ +
Sbjct: 151 YFKNKDSEHYKAFKEAAEEFHPYIPFFATF-----DSKVAKKLTL--KLNEIDFYEAFME 203
Query: 325 RPSASITMNSIPVPTLQDITDNNPYLTLPRISSQSMLDAVC-PVKKLCVVLF-SEDSPEH 382
P +I + + + + TL ++ +SM + + + +V F E P+
Sbjct: 204 EP-VTIPDKPNSEEEIVNFVEEHRRSTLRKLKPESMYETWEDDMDGIHIVAFAEEADPDG 262
Query: 383 DASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPEDSSEISLHIAAMWRMDYK 442
L+ AQ++ + +++ +++ + P V D + I + D
Sbjct: 263 YEFLEILKSVAQDNT-DNPDLSIIWIDPDDFPLLVPYWEKTFDIDLSAPQIGVVNVTDAD 321
Query: 443 KIKY 446
+
Sbjct: 322 SVWM 325
Score = 29.6 bits (66), Expect = 2.9
Identities = 29/201 (14%), Positives = 60/201 (29%), Gaps = 27/201 (13%)
Query: 51 KNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTDGFSGQDSASRNFHNHMYNPFDDV 110
KN D + F + E + F T D + + Y F +
Sbjct: 153 KNKDSEHYKAFKEAAEEF--------HPYIPFFATFDSKVAKKLTLKLNEIDFYEAFMEE 204
Query: 111 FSEGFNFPFEEHDISLF---HKLST-THWNFE--KNYIPKSYTTPHLILFYSDWCFACLQ 164
+ P E +I F H+ ST E H++ F + +
Sbjct: 205 PVTIPDKPNSEEEIVNFVEEHRRSTLRKLKPESMYETWEDDMDGIHIVAFAEEADPDGYE 264
Query: 165 VEPIFKKLMDELSPLGVGFFTVHVHNEQ------GLARRLGVGSQLPQIALL--TDGRTS 216
I K + + + + + + + + PQI ++ TD +
Sbjct: 265 FLEILKSVAQDNTDN-PDLSIIWIDPDDFPLLVPYWEKTFDIDLSAPQIGVVNVTDADSV 323
Query: 217 FFK----EPSFSVQKMVEFFR 233
+ + E S +++ ++
Sbjct: 324 WMEMDDEEDLPSAEELEDWLE 344
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat,
lysine dimethylation, protein binding; HET: MLY; 1.80A
{Escherichia coli} PDB: 3qdn_A*
Length = 287
Score = 53.3 bits (128), Expect = 7e-08
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Query: 136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFT---VHVHNEQ 192
N ++ + +S TTP L F+S+ CLQ+ PI + L + + G F + EQ
Sbjct: 16 NLQQ-VLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYN----GQFILAKLDCDAEQ 70
Query: 193 GLARRLGVGSQLPQIALLTDGR 214
+A + G+ + +P + L +G+
Sbjct: 71 MIAAQFGLRA-IPTVYLFQNGQ 91
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone,
endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Length = 382
Score = 53.4 bits (128), Expect = 8e-08
Identities = 36/282 (12%), Positives = 84/282 (29%), Gaps = 22/282 (7%)
Query: 151 LILFYSDWCFACLQVEPIFKKLMDEL-----SPLGVGFFTVHVHNEQGLARRLGVGSQLP 205
L+ FY+DWC + PIF++ D + + V F V +A+R + S+ P
Sbjct: 26 LVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRI-SKYP 84
Query: 206 QIALLTDGRTSFFK-EPSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWREDNKVHA 264
+ L +G + SV+ + ++ R + + + +
Sbjct: 85 TLKLFRNGMMMKREYRGQRSVKALADYIRQQKSDPIQEIRDLAEITTLD----RSKRNII 140
Query: 265 LLFQRSL-PVRLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDK 323
F++ + A F D V + + G D+++
Sbjct: 141 GYFEQKDSDNYRVFERVANILHDDCAFLSAFGD------VSKPERYSG--DNIIYKPPGH 192
Query: 324 DRPSASITMNSIPVPTLQDITDNNPYLTLPRISSQSMLDAVCPVKKLCVVLFSEDSPEHD 383
P + + + I+ ++ + ++ ++ E
Sbjct: 193 SAPDMVYLGAMTNFDVTYNWIQDKCVPLVREITFENGEELTEEGLPFLILFHMKEDTES- 251
Query: 384 ASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPED 425
A++ I F++ +K + +
Sbjct: 252 -LEIFQNEVARQLISEKGTINFLHADCDKFRHPLLHIQKTPA 292
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide
bond, endoplasmic reticulum isomerase, redox-active
center; 1.95A {Homo sapiens} PDB: 2dj2_A
Length = 241
Score = 49.5 bits (118), Expect = 7e-07
Identities = 37/189 (19%), Positives = 72/189 (38%), Gaps = 25/189 (13%)
Query: 151 LILFYSDWCFACLQVEPIFKKLMDELSPLG--VGFFTVHVHNEQGLARRLGVGSQLPQIA 208
L+ FY+ WC C Q P ++K+ + L + + + LA R V P I
Sbjct: 36 LLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSG-YPTIK 94
Query: 209 LLTDGRTSFFKEPSFSVQKMVEFFR------LKLPYKLIVPLSATNVDAFLDNWREDNKV 262
+L G+ ++ + +++V R P ++ + L+ N D + D +
Sbjct: 95 ILKKGQAVDYEGS-RTQEEIVAKVREVSQPDWTPPPEVTLVLTKENFDEVV----NDADI 149
Query: 263 HALLF--------QRSLPVRLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKD 314
+ F ++ P + K I + D + + +RF V G
Sbjct: 150 ILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKV--DATAETDLAKRFDVSGY-P 206
Query: 315 SLLIFKEDK 323
+L IF++ +
Sbjct: 207 TLKIFRKGR 215
>2qwo_B Putative tyrosine-protein phosphatase auxilin;
chaperone-cochaperone complex, ATP-binding,
nucleotide-bindi nucleus, phosphorylation, stress
response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B*
2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Length = 92
Score = 45.8 bits (108), Expect = 1e-06
Identities = 11/56 (19%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 22 YETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPT----AQEKFLQLTEAYNILSD 73
++ +G+ + ++++K Y++ V+ HP K A+ F++L +A++ +
Sbjct: 36 WKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31
protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 137
Score = 46.4 bits (110), Expect = 2e-06
Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA 195
++ + + ++ F+++W C PI+ L + + G+ F V V ++
Sbjct: 16 TIDEE-LERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVS 74
Query: 196 RRLGVGS-----QLPQIALLTDGR 214
R V + QLP + L G+
Sbjct: 75 TRYKVSTSPLTKQLPTLILFQGGK 98
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi;
structural genomics, PSI, protein structure initiative;
2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB:
2gzp_A 2jzt_A
Length = 142
Score = 46.0 bits (109), Expect = 3e-06
Identities = 14/97 (14%), Positives = 30/97 (30%), Gaps = 6/97 (6%)
Query: 123 DISLFHKLSTTHW-----NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELS 177
+L+ +L T W + ++I + L+ + +L+ E
Sbjct: 7 FSALWQRLLTRGWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFP 66
Query: 178 PLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGR 214
+ + + R V P + TDG+
Sbjct: 67 QFDWQVAVADLEQSEAIGDRFNVRR-FPATLVFTDGK 102
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like
J-domain containing protein, JAC1, chloroplast
accumulation response; 1.80A {Arabidopsis thaliana}
Length = 106
Score = 44.2 bits (104), Expect = 7e-06
Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 22 YETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDP--------TAQEKFLQLTEAYNILS 72
++ + + +RK+Y+R ++ HPDK A++ F L EA++ +
Sbjct: 43 WKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFN 101
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin,
thioredoxin fold, oxidoreductase, reductive methylation;
HET: MLY; 2.05A {Homo sapiens}
Length = 244
Score = 46.5 bits (110), Expect = 8e-06
Identities = 29/210 (13%), Positives = 64/210 (30%), Gaps = 29/210 (13%)
Query: 136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDEL----SPLGVGFF--TVHVH 189
+ S + + F++ WC C+ P + L +++ L + +
Sbjct: 21 TVRG-AVLGS-RSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETN 78
Query: 190 NEQGLARRLGVGSQLPQI----ALLTDGRTSFFKEPSFSVQKMVEFFRLKLP-------- 237
+ + R + P + A +G + F VQ + E L
Sbjct: 79 SA--VCRDFNI-PGFPTVRFFXAFTXNGSGAVFPVAGADVQTLRERLIDALESHHDTWPP 135
Query: 238 -YKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAFKHRTTIVFGVIVYD 296
+ P +D F + + AL+F+ R + + ++
Sbjct: 136 ACPPLEPAXLEEIDGFFARN--NEEYLALIFEXGGSYLAREVALDLSQHKGVAVRRVL-- 191
Query: 297 QEDSSSVFQRFKVPGDKDSLLIFKEDKDRP 326
++V ++F V L+F+
Sbjct: 192 -NTEANVVRKFGVTDFPSCYLLFRNGSVSR 220
Score = 31.9 bits (72), Expect = 0.45
Identities = 15/106 (14%), Positives = 29/106 (27%), Gaps = 9/106 (8%)
Query: 129 KLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHV 188
L + ++ ++F + +V + V V
Sbjct: 139 PLEPAXLEEIDGFFARNNEEYLALIFEXGGSYLAREVALDLSQHKG------VAVRRVLN 192
Query: 189 HNEQGLARRLGVGSQLPQIALL-TDGRTSFFKEPSFSVQKMVEFFR 233
E + R+ GV + P LL +G S S + +
Sbjct: 193 -TEANVVRKFGV-TDFPSCYLLFRNGSVSRVPVLMESRSFYTAYLQ 236
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 126
Score = 43.8 bits (104), Expect = 1e-05
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 149 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIA 208
+I FY+ WC AC ++P ++ + L V V V + GL+ R + + LP I
Sbjct: 24 DWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFIINA-LPTIY 82
Query: 209 LLTDG 213
DG
Sbjct: 83 HCKDG 87
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB:
2l6d_A
Length = 110
Score = 42.7 bits (101), Expect = 2e-05
Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 3/83 (3%)
Query: 131 STTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN 190
+ E + ++ F+ + C C +E + K V +V
Sbjct: 3 AIRDITTEAGMAHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAP--QVAISSVDSEA 60
Query: 191 EQGLARRLGVGSQLPQIALLTDG 213
L + LG +P + + DG
Sbjct: 61 RPELMKELGFER-VPTLVFIRDG 82
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
2.90A {Bacillus cereus}
Length = 105
Score = 41.9 bits (99), Expect = 4e-05
Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 149 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIA 208
L+ ++ C C + +++ + V + + + Q +A R V + P +
Sbjct: 20 LVLLFIKTENCGVCDVMLRKVNYVLENYN--YVEKIEILLQDMQEIAGRYAVFT-GPTVL 76
Query: 209 LLTDGR 214
L +G+
Sbjct: 77 LFYNGK 82
>2l57_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, PSI protein structure initiative; NMR
{Clostridium perfringens}
Length = 126
Score = 42.1 bits (99), Expect = 5e-05
Identities = 13/83 (15%), Positives = 30/83 (36%), Gaps = 2/83 (2%)
Query: 129 KLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSP-LGVGFFTVH 187
+++ N +N P +I+F +D C C++++ + E + + +
Sbjct: 8 QINFQSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLE 67
Query: 188 VHNEQGLARRLGVGSQLPQIALL 210
LA + +P L
Sbjct: 68 EEKNIDLAYKYDANI-VPTTVFL 89
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A
2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A
1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A*
1cqg_A 1cqh_A 1mdi_A ...
Length = 105
Score = 41.1 bits (97), Expect = 8e-05
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA 195
+ + + ++ F + WC C ++P F L ++ S V F V V + Q +A
Sbjct: 9 TAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS--NVIFLEVDVDDCQDVA 66
Query: 196 RRLGVGS 202
V S
Sbjct: 67 SESEVKS 73
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 1e-04
Identities = 24/143 (16%), Positives = 47/143 (32%), Gaps = 33/143 (23%)
Query: 26 GVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEK------FLQLTEAYN--ILSDAERR 77
G P+ SL + ++ D++ P ++ K FL + ++ +L A
Sbjct: 381 GPPQ--SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDL 438
Query: 78 KQYDLFGTTDGFSGQDSASRNFHNHMYNPFDDVFSEGFNFPFEEHDISLFHKL------S 131
DL F+ +D +Y+ FD G + S+ ++
Sbjct: 439 INKDLVKNNVSFNAKD-----IQIPVYDTFD-----GSD--LRVLSGSISERIVDCIIRL 486
Query: 132 TTHWNFEKNYIPKSYTTPHLILF 154
W E + H++ F
Sbjct: 487 PVKW--ETT---TQFKATHILDF 504
Score = 39.3 bits (91), Expect = 0.004
Identities = 100/578 (17%), Positives = 161/578 (27%), Gaps = 206/578 (35%)
Query: 55 PTA--------QEKFLQ-LTEAY-NILSDAERRKQYDLFGTTDGFSGQDSASRNFHNHMY 104
PTA QE+F + L E +D E +L G G+ S
Sbjct: 23 PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY-----VSSLVEPSKV 77
Query: 105 NPFDDVFSEGFNFPFEEH-----DISLFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWC 159
FD V + FE DI H L+ + K+ LI Y
Sbjct: 78 GQFDQVLNLCLTE-FENCYLEGNDI---HALAAKLLQENDTTLVKTK---ELIKNYIT-- 128
Query: 160 FACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGV-GSQLPQIALLTDGRT-SF 217
A + + F K + S L F +G A+ + + G Q G T +
Sbjct: 129 -ARIMAKRPFDKKSN--SAL----FR---AVGEGNAQLVAIFGGQ---------GNTDDY 169
Query: 218 FKEPSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRY 277
F+E + + ++ Y L V + A
Sbjct: 170 FEE-------LRDLYQT---YH---VL----VGDLIK-------FSAETLSE-------- 197
Query: 278 LINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPG-DKDSLLIFKEDKDRPSASITMNSIP 336
++ D+ VF + G + L + + P + SIP
Sbjct: 198 ---------------LIRTTLDAEKVFTQ----GLNILEWL--ENPSNTPDKDY-LLSIP 235
Query: 337 V--P---TLQ--------DITDNNPYLTLPRIS-----SQSMLDAVCP------------ 366
+ P +Q + P + SQ ++ AV
Sbjct: 236 ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVS 295
Query: 367 VKKLCVVLFSEDSPEHDASRHTLRRFAQESRFVHNNI---AFM-------YVFIEKQPEF 416
V+K VLF ++A +T + + NN + M ++
Sbjct: 296 VRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNK 355
Query: 417 VNALTSPEDSSEISLHIAAM-----------------------------WRMDY--KKIK 445
N+ EISL A R+ + +K+K
Sbjct: 356 TNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLK 415
Query: 446 YGW------------LLGDAVDDWKDYNTTKDRLDAGLRSLVND---PYNNLLYDTA--- 487
+ LL A D KD + + D P +YDT
Sbjct: 416 FSNRFLPVASPFHSHLLVPASDL-----INKDLVKNNVSFNAKDIQIP----VYDTFDGS 466
Query: 488 -LKEISDEYIQSLGVRIFNRIFMHIEMAQQSLSRQHIL 524
L+ +S + + V R+ + E Q HIL
Sbjct: 467 DLRVLSGSISERI-VDCIIRLPVKWETTTQ-FKATHIL 502
Score = 34.3 bits (78), Expect = 0.13
Identities = 60/349 (17%), Positives = 99/349 (28%), Gaps = 135/349 (38%)
Query: 33 LQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTDGFS-- 90
L+++ + Y LV + + E +L + + K + T G +
Sbjct: 173 LRDLYQTYHVLVGDLI------KFSAETLSELIR-----TTLDAEKVF-----TQGLNIL 216
Query: 91 --GQDSASRNFHNHMYNPFDDVF-SEGFNFPF-------------EEHDIS---LFHKLS 131
++ ++ P D S + P + + L L
Sbjct: 217 EWLENPSNT--------PDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLK 268
Query: 132 --TTH---------------W-NFEKNYIPKSYTTPHLILFYSDWC-FACLQVEPIF--- 169
T H W +F + K+ T +LF + C + P
Sbjct: 269 GATGHSQGLVTAVAIAETDSWESFFVSVR-KAIT----VLF---FIGVRCYEAYPNTSLP 320
Query: 170 -KKLMDEL-------SP-LGV-GFFTVHVHNEQGLARRLGVGSQLP---QIAL-LTDGRT 215
L D L SP L + V Q + S LP Q+ + L +G
Sbjct: 321 PSILEDSLENNEGVPSPMLSISNLTQEQV---QDYVNK--TNSHLPAGKQVEISLVNGAK 375
Query: 216 SFFKEPSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRL 275
+ V V L Y L + L + LD R +R L
Sbjct: 376 NL-------V---VSGPPQSL-YGLNLTLRKAKAPSGLDQSR------IPFSERKLKFSN 418
Query: 276 RYL-INA-FKH----------------RTTIVF-----GVIVYDQEDSS 301
R+L + + F H + + F + VYD D S
Sbjct: 419 RFLPVASPF-HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGS 466
Score = 32.3 bits (73), Expect = 0.46
Identities = 27/134 (20%), Positives = 47/134 (35%), Gaps = 33/134 (24%)
Query: 92 QDSASRNFHNHM----YNPFD---DVFSEGFNFPFEEHDISLFH------KLSTTHWNFE 138
Q S + M Y DV++ N + + S+ T H+ E
Sbjct: 1624 QGSQEQG----MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGE 1679
Query: 139 K-NYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARR 197
K I ++Y+ + + L+ E IFK++ + + F +E+GL
Sbjct: 1680 KGKRIRENYSA----MIFETIVDGKLKTEKIFKEINEHST--SYTF-----RSEKGLLSA 1728
Query: 198 LGVGSQLPQIALLT 211
+Q Q AL
Sbjct: 1729 ----TQFTQPALTL 1738
Score = 30.8 bits (69), Expect = 1.7
Identities = 50/275 (18%), Positives = 89/275 (32%), Gaps = 83/275 (30%)
Query: 325 RP----SASITMNSIPVPT--------LQD-------------ITDNNPYLTLPRISSQS 359
RP S+ + + VPT LQ+ D+ P ++ +
Sbjct: 7 RPLTLSHGSLE-HVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEP-------TTPA 58
Query: 360 MLDAVCPVKKLC----VVLFSEDSPEHDASRHTLRRFAQESRFVH-NNI-AFMYVFIEKQ 413
L K L +V S+ L F E+ ++ N+I A +++
Sbjct: 59 ELVG----KFLGYVSSLVEPSKVGQFDQVLNLCLTEF--ENCYLEGNDIHALAAKLLQEN 112
Query: 414 PEFVNALTSPEDSSEISLHIAAMWRMD--YKKIKYGWLLGDAVDDWKDYN---------T 462
T + I +I A + K L AV + +
Sbjct: 113 D-----TTLVKTKELIKNYITARIMAKRPFDKKSNSALF-RAVGE-GNAQLVAIFGGQGN 165
Query: 463 TKDRLDAGLRSLVNDPYNNLLYDTALKEISDEYIQSL--GVRIFNRIFMH-------IEM 513
T D + LR L Y+ L+ D L + S E + L ++F +E
Sbjct: 166 TDDYFE-ELRDLYQT-YHVLVGD--LIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN 221
Query: 514 AQQSLSRQHILPA-VSLIFTVIIIVVLAMIMNHYM 547
+ + ++L +S +I ++ LA HY+
Sbjct: 222 PSNTPDKDYLLSIPIS--CPLIGVIQLA----HYV 250
Score = 29.6 bits (66), Expect = 3.6
Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 17/86 (19%)
Query: 4 YTF-LLNVLFINCAVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFL 62
Y F +L+++ N P + IR+NY ++ E D ++ F
Sbjct: 1657 YGFSILDIVINN------PVNLTIHFGGEKGKRIRENYSAMIFETIVDGK--LKTEKIFK 1708
Query: 63 QLTE---AYNILSDAERRKQYDLFGT 85
++ E +Y S+ L T
Sbjct: 1709 EINEHSTSYTFRSEKG-----LLSAT 1729
Score = 28.9 bits (64), Expect = 5.5
Identities = 34/220 (15%), Positives = 64/220 (29%), Gaps = 85/220 (38%)
Query: 339 TLQDITDNNP-YLTL--------------PRISSQSMLDAVCPVKKLCVVLFSEDSP--- 380
++ DI NNP LT+ + ++++D +K +F E +
Sbjct: 1660 SILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEK----IFKEINEHST 1715
Query: 381 ----EHDASRHTLRRFAQ--------------ESRFVHNNIAFM-------YVFIEKQPE 415
+ + +F Q +S+ + A Y
Sbjct: 1716 SYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEY-------- 1767
Query: 416 FVNALT------SPEDSSEISLHIAAMWRMDYKKIKYGWLLGDAVDDWKDYNTTKDRLDA 469
AL S E E+ + R G + AV +D R +
Sbjct: 1768 --AALASLADVMSIESLVEV-VFY----R--------GMTMQVAVP--RD---ELGRSNY 1807
Query: 470 GLRSLVNDPYNNLLYDTALKEISDEYIQSLG--VRI--FN 505
G+ ++ AL+ + + + G V I +N
Sbjct: 1808 GMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYN 1847
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine
nucleotide disulfide oxidoreductase, electron TRAN
oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB:
3qfb_C*
Length = 116
Score = 40.8 bits (96), Expect = 1e-04
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA 195
+ + + ++ F + WC ++P F L ++ S V F V V + Q +A
Sbjct: 20 TAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYS--NVIFLEVDVDDCQDVA 77
Query: 196 RRLGVGS 202
V S
Sbjct: 78 SECEVKS 84
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport,
redox- active center, transport, oxidoreductase; HET:
CME; 1.50A {Saccharomyces cerevisiae}
Length = 112
Score = 40.8 bits (96), Expect = 1e-04
Identities = 8/72 (11%), Positives = 26/72 (36%), Gaps = 2/72 (2%)
Query: 131 STTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN 190
+ + ++ F++ W C ++ +F+ + +E S V F ++
Sbjct: 7 DQEQFTYLTTTAAGD--KLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADE 64
Query: 191 EQGLARRLGVGS 202
++ + +
Sbjct: 65 NSEISELFEISA 76
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport;
2.22A {Homo sapiens} SCOP: c.47.1.1
Length = 107
Score = 39.2 bits (92), Expect = 4e-04
Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 139 KNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRL 198
+ + + + ++ F C CL++ P F + ++ F V VH QG A
Sbjct: 13 QPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP--QAVFLEVDVHQCQGTAATN 70
Query: 199 GVGS 202
+ +
Sbjct: 71 NISA 74
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola
hepatica}
Length = 104
Score = 38.8 bits (91), Expect = 5e-04
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA 195
+ EK I ++ ++ F++ WC C + P + L E+ V F V V + A
Sbjct: 9 DLEK-LINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP--EVEFAKVDVDQNEEAA 65
Query: 196 RRLGVGS 202
+ V +
Sbjct: 66 AKYSVTA 72
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm,
redox-active center, transport, oxidoreductase; 1.60A
{Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Length = 139
Score = 39.4 bits (92), Expect = 5e-04
Identities = 8/49 (16%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 154 FYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGS 202
F + WC Q+ P + +L + + F + V + + +
Sbjct: 53 FSARWCGPSRQIAPYYIELSENYP--SLMFLVIDVDELSDFSASWEIKA 99
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC,
endoplasmic reticulum, glycoprotein, redox-active
center; 2.00A {Saccharomyces cerevisiae}
Length = 298
Score = 41.3 bits (96), Expect = 6e-04
Identities = 38/230 (16%), Positives = 78/230 (33%), Gaps = 41/230 (17%)
Query: 133 THWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDEL-SPLGVGFFTVHVHNE 191
T +F+K +YT+ L+ FY+ WC C ++ F+K L + V ++
Sbjct: 23 TPKSFDKAIHNTNYTS--LVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKN 80
Query: 192 QGLARRLGVGSQLPQIALLTDGRTSFFKEPSF-----------------SVQKMVEFFRL 234
+ L + V P + + + K ++ +V+F
Sbjct: 81 KALCAKYDVNG-FPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLS 139
Query: 235 KLPYKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAFKHRTTIVFGVIV 294
++ + + + + L + K+ +LF + + Y A F I
Sbjct: 140 RIRSYVKKFVRIDTLGSLLR---KSPKLSVVLFSKQDKISPVYKSIALDWLGKFDFYSIS 196
Query: 295 YDQ-----------EDSSSVFQRF------KVPGDKDSLLIFKEDKDRPS 327
+ E + +F+ + DK L++F DKD+
Sbjct: 197 NKKLKQLTDMNPTYEKTPEIFKYLQKVIPEQRQSDKSKLVVFDADKDKFW 246
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein
disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum
vulgare var} PDB: 2vm2_A
Length = 118
Score = 38.9 bits (91), Expect = 6e-04
Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
Query: 136 NFEKNYIPKSYTTPHLIL--FYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQG 193
F+ ++ T L++ F + WC C + P+F + + G F V V +
Sbjct: 16 EFDT-HMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP--GAIFLKVDVDELKD 72
Query: 194 LARRLGVGSQLPQIALLTDGR 214
+A V + +P + DG
Sbjct: 73 VAEAYNVEA-MPTFLFIKDGE 92
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex,
iron-sulfur, electron transport; 1.65A {Spinacia
oleracea} PDB: 2pvo_C 1f9m_A
Length = 111
Score = 38.5 bits (90), Expect = 6e-04
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Query: 136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE-QGL 194
F + + P ++ ++ WC + P ++KL +E V F + + E + L
Sbjct: 14 TFW-PIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYL--DVIFLKLDCNQENKTL 70
Query: 195 ARRLGVGSQLPQIALLTDG 213
A+ LG+ +P +L +
Sbjct: 71 AKELGIRV-VPTFKILKEN 88
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.47.1.1
Length = 85
Score = 37.7 bits (88), Expect = 8e-04
Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 150 HLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIAL 209
++ +F S C C + + E + + + ++ A G+ + +P IA+
Sbjct: 4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGD-KIDVEKIDIMVDREKAIEYGLMA-VPAIAI 61
Query: 210 LTDGRTSF 217
+G F
Sbjct: 62 --NGVVRF 67
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP:
c.47.1.1
Length = 124
Score = 38.5 bits (90), Expect = 0.001
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE-QGL 194
F + + P ++ ++ WC C + P ++KL +E V F + + E + L
Sbjct: 27 TFWP-IVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL--DVIFLKLDCNQENKTL 83
Query: 195 ARRLGVGSQLPQIALLTDG 213
A+ LG+ +P +L +
Sbjct: 84 AKELGIRV-VPTFKILKEN 101
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase,
thioredoxin-fold, protein disulfide reductase; 1.70A
{Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Length = 122
Score = 38.1 bits (89), Expect = 0.001
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Query: 139 KNYIPKSYTTPHLIL--FYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLAR 196
I ++ T L++ F + WC C + P+F L + F V V + +A
Sbjct: 24 TMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFP--NAVFLKVDVDELKPIAE 81
Query: 197 RLGVGSQLPQIALLTDGR 214
+ V + +P + +G
Sbjct: 82 QFSVEA-MPTFLFMKEGD 98
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE,
fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Length = 121
Score = 37.7 bits (88), Expect = 0.002
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA 195
+ K +I F++ WC C + P+F+K+ D + VGF+ V V + +A
Sbjct: 24 DQFKQVTGGD--KVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIA 81
Query: 196 RRLGVGSQLPQIALLTDG 213
+ +G+ + +P +G
Sbjct: 82 QEVGIRA-MPTFVFFKNG 98
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus
musculus} PDB: 3t59_A*
Length = 519
Score = 40.3 bits (93), Expect = 0.002
Identities = 36/320 (11%), Positives = 87/320 (27%), Gaps = 46/320 (14%)
Query: 136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDEL----SPLGVGFF--TVHVH 189
+ + S ++ + F++ WC + P +K+L +++ L + +
Sbjct: 21 SVRP-TVLGS-SSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETN 78
Query: 190 NEQGLARRLGV----------GSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLP-- 237
+ + R + G + + + +E R P
Sbjct: 79 SA--VCREFNIAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESHRDTWPPA 136
Query: 238 YKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAFKHRTTIVFGVIVYDQ 297
+ P ++D F AL+F+R R + + ++ +
Sbjct: 137 CPPLEPAKLNDIDGFFTR--NKADYLALVFEREDSYLGREVTLDLSQYHAVAVRRVLNTE 194
Query: 298 EDSSSVFQRFKVPGDKDSLLIFKEDKDRP----------------SASITMNSIPVPTLQ 341
D + +F V L+ + P T
Sbjct: 195 SD---LVNKFGVTDFPSCYLLLRNGSVSRVPVLVESRSFYTSYLRGLPGLTRDAPPTTAT 251
Query: 342 DITDNNPYLTLPRISSQSMLDAVCPVKKLCVVLFSEDSPEHDAS---RHTLRRFAQESRF 398
+T + T+ + + +S + L +L E L++F
Sbjct: 252 PVTADKIAPTVWKFADRSKIYMADLESALHYILRVEVGKFSVLEGQRLVALKKFVAVLAK 311
Query: 399 VHNNIAFMYVFIEKQPEFVN 418
+ F+ +++
Sbjct: 312 YFPGQPLVQNFLHSINDWLQ 331
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A
{Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Length = 117
Score = 37.3 bits (87), Expect = 0.002
Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA 195
++ + + ++ F++ WC C + P+FK+L ++ F V V + A
Sbjct: 22 GDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYD---AIFVKVDVDKLEETA 78
Query: 196 RRLGVGS 202
R+ + +
Sbjct: 79 RKYNISA 85
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP:
c.47.1.1
Length = 113
Score = 37.3 bits (87), Expect = 0.002
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Query: 120 EEHDISLFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPL 179
EE + H + T +FEK K ++ F + WC C + PIF +L +
Sbjct: 2 EEGQVIACHTVDTWKEHFEKG---KGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-- 56
Query: 180 GVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGR 214
V F V V + +A V + +P L DG+
Sbjct: 57 NVTFLKVDVDELKAVAEEWNVEA-MPTFIFLKDGK 90
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome
research, oxidoreductase; NMR {Oryza sativa}
Length = 130
Score = 37.4 bits (87), Expect = 0.002
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Query: 136 NFEKNYIPKSYTTPHLIL--FYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQG 193
F+ + K+ +++ F + WC C + P+F + + G F V V +
Sbjct: 24 EFDAQ-MTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP--GAVFLKVDVDELKE 80
Query: 194 LARRLGVGSQLPQIALLTDG 213
+A + V + +P + DG
Sbjct: 81 VAEKYNVEA-MPTFLFIKDG 99
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized,
dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A
2oe0_A
Length = 114
Score = 36.9 bits (86), Expect = 0.003
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Query: 136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA 195
+N I ++ +I FY+ WC C ++P KL+ V F V +A
Sbjct: 21 TEFRNLIKQN--DKLVIDFYATWCGPCKMMQPHLTKLIQAYP--DVRFVKCDVDESPDIA 76
Query: 196 RRLGVGSQLPQIALLTDG 213
+ V + +P L DG
Sbjct: 77 KECEVTA-MPTFVLGKDG 93
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron
transport; 2.20A {Drosophila melanogaster} SCOP:
c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Length = 106
Score = 36.5 bits (85), Expect = 0.003
Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 2/71 (2%)
Query: 132 TTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE 191
+ + + K+ ++ F++ WC C + P +L + V V V
Sbjct: 6 KDKADLDG-QLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQF-ADNVVVLKVDVDEC 63
Query: 192 QGLARRLGVGS 202
+ +A + S
Sbjct: 64 EDIAMEYNISS 74
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein,
thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 135
Score = 37.1 bits (86), Expect = 0.003
Identities = 11/80 (13%), Positives = 18/80 (22%), Gaps = 6/80 (7%)
Query: 136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA 195
+ +I Y CL V L + F
Sbjct: 19 QYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP--ETKFVKA---IVNSCI 73
Query: 196 RRLGVGSQLPQIALLTDGRT 215
+ LP I + +G+
Sbjct: 74 EHYHD-NCLPTIFVYKNGQI 92
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Length = 153
Score = 37.5 bits (87), Expect = 0.003
Identities = 13/82 (15%), Positives = 31/82 (37%), Gaps = 4/82 (4%)
Query: 132 TTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE 191
+ FE+ + + ++ F++ W C Q+ + +L EL V F +
Sbjct: 18 GSAGQFEE-LLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELP--QVSFVKLEAEGV 74
Query: 192 QGLARRLGVGSQLPQIALLTDG 213
++ + + S +P +
Sbjct: 75 PEVSEKYEISS-VPTFLFFKNS 95
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure
initiative, CESG, center for eukaryotic structural
genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Length = 124
Score = 37.0 bits (86), Expect = 0.003
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALL 210
++ F + WC C + P F L +L V F V + +A + + +P L
Sbjct: 42 VVDFTASWCGPCRFIAPFFADLAKKLP--NVLFLKVDTDELKSVASDWAIQA-MPTFMFL 98
Query: 211 TDGR 214
+G+
Sbjct: 99 KEGK 102
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell
cycle, mRNA processing, mRNA splicing, nucleus,
phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens}
PDB: 1xbs_A
Length = 149
Score = 37.2 bits (86), Expect = 0.003
Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Query: 132 TTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE 191
T+ ++ I + ++ F D CLQ++ I K +LS + + V V
Sbjct: 9 TSKKEVDQ-AIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAA-IYLVDVDQT 66
Query: 192 QGLARRLGVGSQLPQIALLTDGR 214
+ + S +P +G+
Sbjct: 67 AVYTQYFDI-SYIPSTVFFFNGQ 88
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase,
structural genomics consortium, SGC; 2.00A {Plasmodium
falciparum}
Length = 133
Score = 37.0 bits (86), Expect = 0.004
Identities = 13/94 (13%), Positives = 28/94 (29%), Gaps = 9/94 (9%)
Query: 136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA 195
+ + +I F + WC C +++ FK ++ V + V L
Sbjct: 29 GSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYYY---VTLVDIDVDIHPKLN 85
Query: 196 RRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMV 229
+ + + LP + V +
Sbjct: 86 DQHNIKA-LPTFEFYFNL-----NNEWVLVHTVE 113
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold,
sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A
{Trypanosoma brucei} PDB: 3qd9_A*
Length = 470
Score = 38.5 bits (88), Expect = 0.005
Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 9/93 (9%)
Query: 136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVH------ 189
+F + + P ++LFY+D C AC + F K L
Sbjct: 32 DFSR-VHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNC 90
Query: 190 -NEQGLARRLGVGSQLPQIALLTDGRTSFFKEP 221
+E L R+ + +P++ + E
Sbjct: 91 ASEVDLCRKYDINF-VPRLFFFYPRDSCRSNEE 122
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A
{Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Length = 361
Score = 38.1 bits (88), Expect = 0.006
Identities = 28/195 (14%), Positives = 59/195 (30%), Gaps = 24/195 (12%)
Query: 51 KNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTDGFSGQDSASRNFHNHMYNPFDDV 110
K+ + + ++FLQ AE T++ ++ FD+
Sbjct: 44 KDVESDSAKQFLQA---------AEAIDDIPFGITSNSDVFSKYQLDKDGVVLFKKFDEG 94
Query: 111 FSEGFNFPFEEHDISLFHKLSTTHW-------NFEKNYIPKSYTTPHLILFYSDWCFACL 163
+ F + ++ F K + K + H++LF
Sbjct: 95 RNN-FEGEVTKENLLDFIKHNQLPLVIEFTEQTAPKIF--GGEIKTHILLFLPKSVSDYD 151
Query: 164 QVEPIFKKLMDELSPLGVGFFTVHVHNE-QGLARRLGV-GSQLPQIALLTDGRTSFFKEP 221
FK + + F H + Q + G+ + P + L+T +P
Sbjct: 152 GKLSNFKTAAESFKGKILFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKP 211
Query: 222 S---FSVQKMVEFFR 233
+ +++ EF
Sbjct: 212 ESEELTAERITEFCH 226
Score = 35.4 bits (81), Expect = 0.039
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDEL 176
NFE + + FY+ WC C Q+ PI+ KL +
Sbjct: 258 NFEDVAFDEKKNV--FVEFYAPWCGHCKQLAPIWDKLGETY 296
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas
reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Length = 112
Score = 35.8 bits (83), Expect = 0.006
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Query: 136 NFEKNYIPKSYTTPHLIL--FYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQG 193
++ + K I+ F + WC C + P+F+ L ++ V F V V
Sbjct: 12 AWDAQ-LAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDY-AGKVIFLKVDVDAVAA 69
Query: 194 LARRLGVGSQLPQIALLTDG 213
+A G+ + +P + DG
Sbjct: 70 VAEAAGITA-MPTFHVYKDG 88
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing
protein 7, endoplasmic reticulum, redox-active center,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 130
Score = 35.8 bits (83), Expect = 0.007
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA 195
NF + I L+ FY+ WC C ++ P +KK L + V V+ Q L
Sbjct: 26 NFNREVIQSDGLW--LVEFYAPWCGHCQRLTPEWKKAATALKDV-VKVGAVNADKHQSLG 82
Query: 196 RRLGV 200
+ GV
Sbjct: 83 GQYGV 87
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm,
deoxyribonucleotide synthesis, golgi apparatus,
membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB:
3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Length = 109
Score = 35.4 bits (82), Expect = 0.009
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 154 FYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDG 213
FY+ WC C + P+ +K ++ F+ + V +A++ V + +P + L +G
Sbjct: 31 FYATWCGPCKMIAPMIEKFSEQYP--QADFYKLDVDELGDVAQKNEVSA-MPTLLLFKNG 87
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich,
unknown function; 2.70A {Homo sapiens}
Length = 118
Score = 35.5 bits (82), Expect = 0.009
Identities = 12/78 (15%), Positives = 18/78 (23%), Gaps = 6/78 (7%)
Query: 136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA 195
+ +I Y CL V L + F V
Sbjct: 12 QYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFP--ETKFVKAIV---NSCI 66
Query: 196 RRLGVGSQLPQIALLTDG 213
+ LP I + +G
Sbjct: 67 QHYHDNC-LPTIFVYKNG 83
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin
like domain, redox, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 133
Score = 35.8 bits (83), Expect = 0.009
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFT---VHVHNEQ 192
+F+KN + S ++ FY+ WC C +EP + E+ G V Q
Sbjct: 16 SFDKN-VLDS-EDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQ 73
Query: 193 GLARRLGV 200
LA R G+
Sbjct: 74 VLASRYGI 81
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A
{Trypanosoma} SCOP: c.47.1.1
Length = 125
Score = 35.5 bits (82), Expect = 0.010
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 154 FYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDG 213
F + WC C +E +K+ E V F V N + + V LP + G
Sbjct: 44 FTAVWCGPCKTIERPMEKIAYEFP--TVKFAKVDADNNSEIVSKCRVLQ-LPTFIIARSG 100
Query: 214 R 214
+
Sbjct: 101 K 101
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A
{Rhodobacter capsulatus}
Length = 155
Score = 35.9 bits (83), Expect = 0.010
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 148 TPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI 207
P L+ F++ WC C Q+ P F+ L+ V + +A R + +P
Sbjct: 65 LPLLVDFWAPWCGPCRQMAPQFQAAAATLAG-QVRLAKIDTQAHPAVAGRHRIQG-IPAF 122
Query: 208 ALLTDGR 214
L GR
Sbjct: 123 ILFHKGR 129
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 133
Score = 35.4 bits (82), Expect = 0.011
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELS 177
F+ + LI FY+ WC C Q+EPI+ L +
Sbjct: 16 TFDAIVMDPKKDV--LIEFYAPWCGHCKQLEPIYTSLGKKYK 55
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.19A {Yersinia pestis}
Length = 148
Score = 35.9 bits (83), Expect = 0.011
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA 195
+K + + P +I F++ WC C PIF + E + V F V+ E L+
Sbjct: 47 TLDK--LLQD-DLPMVIDFWAPWCGPCRSFAPIFAETAAERAG-KVRFVKVNTEAEPALS 102
Query: 196 RRLGVGSQLPQIALLTDGR 214
R + S +P I L +G+
Sbjct: 103 TRFRIRS-IPTIMLYRNGK 120
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul
structural genomics, PSI-2, protein structure
initiative; 1.30A {Xylella fastidiosa}
Length = 133
Score = 35.7 bits (82), Expect = 0.011
Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 16/100 (16%)
Query: 149 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQG-----LARRLGVGSQ 203
P L++F ++WC C ++ + + + F V + L++ G Q
Sbjct: 31 PTLLVFGANWCTDCRALDKSLRNQ-KNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQ 89
Query: 204 --LPQIALLT-DGR-------TSFFKEPSFSVQKMVEFFR 233
+P + ++ DG+ S Q + +FF
Sbjct: 90 DGIPAVVVVNSDGKVRYTTKGGELANARKMSDQGIYDFFA 129
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium
falciparum}
Length = 128
Score = 35.4 bits (82), Expect = 0.012
Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 7/99 (7%)
Query: 118 PFEEHDISLFHKLSTTHW---NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMD 174
F+++ + +F K+ N K+ T ++ F++ WC AC KL
Sbjct: 12 RFDKYYLRMFKKVPRLQQNGSNIINGVNMKN--TVIVLYFFAKWCQACTMQSTEMDKLQK 69
Query: 175 ELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDG 213
+ V + + LAR+ V S LP I LL +
Sbjct: 70 YYGK-RIYLLKVDLDKNESLARKFSVKS-LPTIILLKNK 106
>1mek_A Protein disulfide isomerase; electron transport, redox-active
center, endoplasmic reticulum; NMR {Homo sapiens} SCOP:
c.47.1.2
Length = 120
Score = 35.0 bits (81), Expect = 0.015
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
Query: 133 THWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLG--VGFFTVHVHN 190
NF + Y L+ FY+ WC C + P + K +L G + V
Sbjct: 13 RKSNFAEALAAHKYL---LVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATE 69
Query: 191 EQGLARRLGV 200
E LA++ GV
Sbjct: 70 ESDLAQQYGV 79
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics;
1.99A {Desulfitobacterium hafniense dcb-2}
Length = 111
Score = 34.6 bits (80), Expect = 0.016
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA 195
FE+ I L++F C C +V P+ ++L GF+ V V E+ L
Sbjct: 13 TFEQL-IYDE-GKACLVMFSRKNCHVCQKVTPVLEELRLNYEE-SFGFYYVDVEEEKTLF 69
Query: 196 RRLGVGSQLPQIALLTDG 213
+R + +PQI DG
Sbjct: 70 QRFSLKG-VPQILYFKDG 86
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure
initiative structural genomics of pathogenic protozoa
consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Length = 112
Score = 34.6 bits (80), Expect = 0.018
Identities = 11/61 (18%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 154 FYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDG 213
F+++WC C ++ P +++ + + F V V + + + S +P + +G
Sbjct: 33 FFAEWCGPCKRIAPFYEECSKTYT--KMVFIKVDVDEVSEVTEKENITS-MPTFKVYKNG 89
Query: 214 R 214
Sbjct: 90 S 90
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural
genomics/proteomics initiative, RSGI; 1.82A {Thermus
thermophilus}
Length = 140
Score = 35.1 bits (81), Expect = 0.020
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Query: 136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA 195
F + + L+ F++ WC C V PI ++L + + + V+V GLA
Sbjct: 42 GFA-QEVAGA--PLTLVDFFAPWCGPCRLVSPILEELARDHAG-RLKVVKVNVDEHPGLA 97
Query: 196 RRLGVGSQLPQIALLTDGR 214
R GV S +P + L G
Sbjct: 98 ARYGVRS-VPTLVLFRRGA 115
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Length = 118
Score = 34.3 bits (79), Expect = 0.022
Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 5/85 (5%)
Query: 129 KLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHV 188
+ TH K L+ F++ WC C ++ I + + V F V V
Sbjct: 7 HFNGTHEALLNRI--KEAPGLVLVDFFATWCGPCQRLGQILPSIAEANK--DVTFIKVDV 62
Query: 189 HNEQGLARRLGVGSQLPQIALLTDG 213
A GV S +P + +
Sbjct: 63 DKNGNAADAYGVSS-IPALFFVKKE 86
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola
insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Length = 121
Score = 34.3 bits (79), Expect = 0.024
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELS 177
N+ + + + LI FY+ WC C + P +++L +
Sbjct: 16 NYNEIVLDDTKDV--LIEFYAPWCGHCKALAPKYEELGALYA 55
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB:
3hhv_A
Length = 104
Score = 33.4 bits (77), Expect = 0.032
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA 195
NF+ S ++ F+++WC CL + PI ++L ++ +G G ++ +A
Sbjct: 8 NFDS--FLAS-HEIAVVDFWAEWCAPCLILAPIIEELAEDYPQVGFG--KLNSDENPDIA 62
Query: 196 RRLGVGSQLPQIALLTDG 213
R GV S LP + DG
Sbjct: 63 ARYGVMS-LPTVIFFKDG 79
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC
structure funded by NIH, protein structure initiative,
PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Length = 85
Score = 33.0 bits (76), Expect = 0.033
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 147 TTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQ 206
+ + LF S C C + + +++ +E+ V ++V A G+ + +P
Sbjct: 2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPD-AVEVEYINVMENPQKAMEYGIMA-VPT 59
Query: 207 IALLTDG 213
I + D
Sbjct: 60 IVINGDV 66
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 140
Score = 33.9 bits (78), Expect = 0.039
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLG--VGFFTVHVHNEQG 193
NF+ K L+ FY+ WC C Q P ++K+ L + + +
Sbjct: 26 NFDNFVADKDTV---LLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASM 82
Query: 194 LARRLGV 200
LA + V
Sbjct: 83 LASKFDV 89
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19,
structural genomics, PSI, protein structure initiative;
1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Length = 164
Score = 34.3 bits (78), Expect = 0.048
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 149 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN--EQGLARRLGVGSQLPQ 206
P +++ + WC AC ++P F + E+S L F V++ + E G +P+
Sbjct: 48 PLMVIIHKSWCGACKALKPKFAES-TEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPR 106
Query: 207 IALLT 211
I L
Sbjct: 107 ILFLD 111
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis}
PDB: 3hyp_A
Length = 141
Score = 33.3 bits (76), Expect = 0.067
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 148 TPHLILFYSDWCFACLQVEPIFKKLMDELSPLG-VGFFTVHVHNEQGLARRLGVGSQLPQ 206
P ++ FY+DWC C V PI ++L E + G + + V+V E LAR G+ S +P
Sbjct: 52 KPAIVDFYADWCGPCKMVAPILEELSKEYA--GKIYIYKVNVDKEPELARDFGIQS-IPT 108
Query: 207 IALLTDG 213
I +
Sbjct: 109 IWFVPMK 115
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2,
protein STRU initiative; NMR {Bacteroides vulgatus}
Length = 136
Score = 33.2 bits (76), Expect = 0.072
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 148 TPHLILFYSDWCFACLQVEPIFKKLMDELSPLG-VGFFTVHVHNEQGLARRLGVGSQLPQ 206
P ++ FY+DWC C V PI +L E G + + V EQ LA G+ S +P
Sbjct: 39 KPAIVDFYADWCGPCKMVAPILDELAKEYD--GQIVIYKVDTEKEQELAGAFGIRS-IPS 95
Query: 207 IALLTDG 213
I +
Sbjct: 96 ILFIPME 102
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure
initiative, structural genomics; 2.30A {Methanosarcina
mazei}
Length = 140
Score = 33.2 bits (76), Expect = 0.077
Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Query: 136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLG-VGFFTVHVHNEQGL 194
+ + S P +++FYS C C +EP F++ E F +++
Sbjct: 15 TWSQQVE-DS-KKPVVVMFYSPACPYCKAMEPYFEEYAKEYG--SSAVFGRINIATNPWT 70
Query: 195 ARRLGVGSQLPQIALLTDGR 214
A + GV P GR
Sbjct: 71 AEKYGVQG-TPTFKFFCHGR 89
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif,
endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Length = 122
Score = 32.7 bits (75), Expect = 0.085
Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Query: 136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA 195
F + + + T ++ FY+ WC C P F+ L + V V
Sbjct: 12 TFNEK-VLQG-KTHWVVDFYAPWCGPCQNFAPEFELLARMIKGK-VRAGKVDCQAYPQTC 68
Query: 196 RRLGV 200
++ G+
Sbjct: 69 QKAGI 73
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold,
isomerase; 2.00A {Homo sapiens} PDB: 2diz_A
Length = 111
Score = 32.3 bits (74), Expect = 0.11
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLG--VGFFTVHVHNEQG 193
NF+ I + T I FY+ WC C + P +++L + P V V E+
Sbjct: 14 NFDD-TIAEGIT---FIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERN 69
Query: 194 LARRLGV 200
+ + V
Sbjct: 70 ICSKYSV 76
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein
disulfide isomerase, endoplasmic R isomerase; 1.83A
{Homo sapiens}
Length = 151
Score = 32.7 bits (74), Expect = 0.12
Identities = 8/63 (12%), Positives = 25/63 (39%)
Query: 149 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIA 208
P +++ + + C ++ +F + + F +++ +E G +P+I
Sbjct: 46 PLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHETTDKNLSPDGQYVPRIM 105
Query: 209 LLT 211
+
Sbjct: 106 FVD 108
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines
missing, unknown funct; 1.50A {Trypanosoma cruzi}
Length = 127
Score = 31.9 bits (73), Expect = 0.15
Identities = 6/42 (14%), Positives = 13/42 (30%), Gaps = 2/42 (4%)
Query: 136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELS 177
F+ + +L+Y W + ++ L S
Sbjct: 24 TFDSIVMDPEKDV--FVLYYVPWSRHSVAAMRLWDDLSMSQS 63
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain
(residues 33-153), D domain (residues 154-261), CHA;
2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Length = 240
Score = 33.0 bits (75), Expect = 0.18
Identities = 20/108 (18%), Positives = 34/108 (31%), Gaps = 14/108 (12%)
Query: 133 THWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLG------VGFFTV 186
F K IPKS L+ F + + + Q FK+L + + VG
Sbjct: 11 DTVTFYK-VIPKSKFV--LVKFDTQYPYGEKQ--DEFKRLAENSASSDDLLVAEVGISDY 65
Query: 187 HVHNEQGLARRLGVGSQ-LPQIALLTDGRTSFFK--EPSFSVQKMVEF 231
L+ + + + P L DG + V + +
Sbjct: 66 GDKLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYTGAVKVGAIQRW 113
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A
{Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB:
1j08_A
Length = 226
Score = 33.1 bits (75), Expect = 0.18
Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 4/90 (4%)
Query: 150 HLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN---EQGLARRLGVGSQLPQ 206
+++F + C C + K E + G G + A + V + +P+
Sbjct: 137 RILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMA-VPK 195
Query: 207 IALLTDGRTSFFKEPSFSVQKMVEFFRLKL 236
I + +G E ++ + +E L
Sbjct: 196 IVIQVNGEDRVEFEGAYPEKMFLEKLLSAL 225
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich,
structural genomics, PSI, protein structure initiative;
HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP:
c.47.1.1
Length = 118
Score = 31.5 bits (71), Expect = 0.26
Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 10/91 (10%)
Query: 150 HLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE------QGLARRLGVGSQ 203
C C + ++ E + ++ Q R G+ +
Sbjct: 32 ATFFIGRKTCPYCRKFAGTLSGVVAE---TKAHIYFINSEEPSQLNDLQAFRSRYGIPT- 87
Query: 204 LPQIALLTDGRTSFFKEPSFSVQKMVEFFRL 234
+P +TDG+ + + S S Q++ +F L
Sbjct: 88 VPGFVHITDGQINVRCDSSMSAQEIKDFAGL 118
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.25A {Aeropyrum pernix}
Length = 135
Score = 31.3 bits (71), Expect = 0.35
Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 7/73 (9%)
Query: 148 TPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFT------VHVHNEQGLARRLGVG 201
++ YS C C + P + E+ V F + + + GV
Sbjct: 32 GDAILAVYSKTCPHCHRDWPQLIQASKEVDVPIVMFIWGSLIGERELSAARLEMNKAGVE 91
Query: 202 SQLPQIALLTDGR 214
P + +GR
Sbjct: 92 G-TPTLVFYKEGR 103
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion,
electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB:
1uvz_A 1w89_A
Length = 119
Score = 30.8 bits (70), Expect = 0.44
Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 132 TTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLG-VGFFTVHVHN 190
+F+ + S TP ++ F++ WC C + P +K++ + G V V + +
Sbjct: 18 QDGPDFQDRVV-NS-ETPVVVDFHAQWCGPCKILGPRLEKMVAKQH--GKVVMAKVDIDD 73
Query: 191 EQGLARRLGVGSQLPQIALLTDGR 214
LA V + +P + + +G
Sbjct: 74 HTDLAIEYEVSA-VPTVLAMKNGD 96
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like,
C-terminal domain, reduced form at PH7, oxidoreductase;
0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A
2fwf_A 2fwg_A 1vrs_D 1uc7_A
Length = 134
Score = 30.9 bits (70), Expect = 0.49
Identities = 16/67 (23%), Positives = 22/67 (32%), Gaps = 6/67 (8%)
Query: 149 PHLILFYSDWCFACLQVEPIFKKLMDELSPL-GVGFFTVHVHNE----QGLARRLGVGSQ 203
P ++ Y+DWC AC + E L +V L + L V
Sbjct: 33 PVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLG- 91
Query: 204 LPQIALL 210
LP I
Sbjct: 92 LPTILFF 98
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox
enzymology, oxidoreductase, redox-active center,
transport; 1.85A {Staphylococcus aureus} PDB: 2o7k_A
2o85_A 2o89_A 2o87_A
Length = 106
Score = 30.0 bits (68), Expect = 0.57
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 149 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIA 208
L+ F++ C C + P+ ++L + + V A + V S +P +
Sbjct: 21 VQLVDFWATACGPCKMIAPVLEELAADYEG-KADILKLDVDENPSTAAKYEVMS-IPTLI 78
Query: 209 LLTDG 213
+ DG
Sbjct: 79 VFKDG 83
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A
{Acetobacter aceti}
Length = 107
Score = 29.9 bits (68), Expect = 0.60
Identities = 17/78 (21%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA 195
+F+++ + K+ + L+ F+++WC C + P ++ E + V V++ +
Sbjct: 11 SFDQDVL-KA-SGLVLVDFWAEWCGPCKMIGPALGEIGKEFAG-KVTVAKVNIDDNPETP 67
Query: 196 RRLGVGSQLPQIALLTDG 213
V S +P + L+ DG
Sbjct: 68 NAYQVRS-IPTLMLVRDG 84
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics
research consortium, oxidoreductase; NMR {Thermus
thermophilus}
Length = 130
Score = 30.4 bits (69), Expect = 0.64
Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 17/71 (23%)
Query: 151 LILFYSDWCFACLQVE------PIFKKLMDELSPLGVGFFTVHV----HNEQGLARRLGV 200
++ F+S+ C C Q+ P +L++ F V Q LARR V
Sbjct: 23 MVYFHSEHCPYCQQMNTFVLSDPGVSRLLEA------RFVVASVSVDTPEGQELARRYRV 76
Query: 201 GSQLPQIALLT 211
P L
Sbjct: 77 PG-TPTFVFLV 86
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule,
electron transport; 1.51A {Streptomyces coelicolor}
Length = 112
Score = 30.0 bits (68), Expect = 0.67
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA 195
+FE++ + K+ P L+ F++ WC C Q+ P + + E + +++ G A
Sbjct: 14 SFEQDVL-KN-DKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGD-KIEIVKLNIDENPGTA 70
Query: 196 RRLGVGSQLPQIALLTDG 213
+ GV S +P + + G
Sbjct: 71 AKYGVMS-IPTLNVYQGG 87
>3ian_A Chitinase; structural genomics, hydrolase, glycosidase, PSI-2,
protein structure initiative; 1.75A {Lactococcus lactis
subsp}
Length = 321
Score = 31.5 bits (71), Expect = 0.69
Identities = 9/43 (20%), Positives = 15/43 (34%)
Query: 82 LFGTTDGFSGQDSASRNFHNHMYNPFDDVFSEGFNFPFEEHDI 124
L G + S +F N + D +G + E+ I
Sbjct: 86 LGGADAHIELKKSQESDFVNEIIRLVDTYGFDGLDIDLEQAAI 128
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase;
1.90A {Sulfolobus solfataricus}
Length = 109
Score = 30.0 bits (68), Expect = 0.71
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 130 LSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLG-VGFFTVHV 188
L T NF++ + ++ L+ +++WC C EPI+KK+ ++ G F ++V
Sbjct: 7 LVLTEENFDE--VIRN-NKLVLVDCWAEWCAPCHLYEPIYKKVAEKYK--GKAVFGRLNV 61
Query: 189 HNEQGLARRLGVGSQLPQIALLTDG 213
Q +A + V + +P + +G
Sbjct: 62 DENQKIADKYSVLN-IPTTLIFVNG 85
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2,
protein structure initiative; NMR {Bacteroides
thetaiotaomicron}
Length = 130
Score = 29.7 bits (67), Expect = 0.89
Identities = 12/76 (15%), Positives = 29/76 (38%), Gaps = 7/76 (9%)
Query: 133 THWNFEKNYIPKSYTTPHLIL--FYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN 190
+F + + ++ L+ ++ WC C ++ + K F + +
Sbjct: 12 RELSFPEA-LKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDM 70
Query: 191 EQG----LARRLGVGS 202
E+G L ++ GV +
Sbjct: 71 EKGEGVELRKKYGVHA 86
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A
{Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A
Length = 123
Score = 29.3 bits (65), Expect = 1.2
Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 8/55 (14%)
Query: 141 YIPKSYTTPHLILFYSD-------WCFACLQVEPIFKKLMDELSPLGVGFFTVHV 188
+ + F WC C+Q EP+ ++ + + G F V
Sbjct: 18 AVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHI-SEGCVFIYCQV 71
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 30.1 bits (67), Expect = 1.5
Identities = 9/75 (12%), Positives = 26/75 (34%), Gaps = 18/75 (24%)
Query: 17 VSLDPYETLG--VPRTASLQEIRKNYKRLVVE-WHPDKNN------DPTAQEKFLQLTEA 67
++ +P+E + +P + + + D+ N D ++ ++Q
Sbjct: 166 IAYEPFENIAIELP---PNEILFSENNDMDNNNDGVDELNKKCTFWDAISKLYYVQF--- 219
Query: 68 YNILSDAERRKQYDL 82
++Q D+
Sbjct: 220 ---FFKQAEQEQADV 231
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A
{Escherichia coli}
Length = 128
Score = 29.3 bits (66), Expect = 1.5
Identities = 17/79 (21%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLG-VGFFTVHVHNEQGL 194
+F+ + + K+ L+ F+++WC + PI ++ DE G + +++ G
Sbjct: 31 SFDTDVL-KA-DGAILVDFWAEWCGPAKMIAPILDEIADEYQ--GKLTVAKLNIDQNPGT 86
Query: 195 ARRLGVGSQLPQIALLTDG 213
A + G+ +P + L +G
Sbjct: 87 APKYGIRG-IPTLLLFKNG 104
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A
{Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A
2l59_A
Length = 121
Score = 28.9 bits (65), Expect = 1.7
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELS-PLGVGFFTVHVHNEQGL 194
+F + + S P L+ F++ WC C V P+ +++ E + L V + V
Sbjct: 21 SFATDVL-SS-NKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVA--KLDVDTNPET 76
Query: 195 ARRLGVGSQLPQIALLTDGR 214
AR V S +P + L DG+
Sbjct: 77 ARNFQVVS-IPTLILFKDGQ 95
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport,
redox-active center; 1.50A {Bacillus subtilis} PDB:
2ipa_A 2gzy_A 2gzz_A
Length = 112
Score = 28.4 bits (64), Expect = 2.0
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 148 TPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI 207
L F++ WC + P+ ++L E+ + + V Q A + GV S +P +
Sbjct: 18 GVVLADFWAPWCGPSKMIAPVLEELDQEMGD-KLKIVKIDVDENQETAGKYGVMS-IPTL 75
Query: 208 ALLTDG 213
+L DG
Sbjct: 76 LVLKDG 81
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP:
c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Length = 105
Score = 28.4 bits (64), Expect = 2.1
Identities = 16/79 (20%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLG-VGFFTVHVHNEQGL 194
++++ + +S P ++ F++ WC C + P+ +L E S G + + ++ G+
Sbjct: 9 SWKEFVL-ES-EVPVMVDFWAPWCGPCKLIAPVIDELAKEYS--GKIAVYKLNTDEAPGI 64
Query: 195 ARRLGVGSQLPQIALLTDG 213
A + + S +P + +G
Sbjct: 65 ATQYNIRS-IPTVLFFKNG 82
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB:
1b9y_C 1b9x_C
Length = 245
Score = 29.7 bits (66), Expect = 2.2
Identities = 12/63 (19%), Positives = 19/63 (30%), Gaps = 4/63 (6%)
Query: 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALL 210
++ Y D C + L E V F + + G R LP + +
Sbjct: 137 VVHIYEDGIKGCDALNSSLICLAAEYP--MVKFCKIKA-SNTGAGDRFSSDV-LPTLLVY 192
Query: 211 TDG 213
G
Sbjct: 193 KGG 195
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Length = 106
Score = 28.4 bits (64), Expect = 2.3
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 130 LSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLG-VGFFTVHV 188
+ T NFE+ + KS P L+ F++ WC C + PI ++L E G V V+V
Sbjct: 4 IEVTDENFEQEVL-KS-DKPVLVDFWAPWCGPCRMIAPIIEELAKEYE--GKVKVVKVNV 59
Query: 189 HNEQGLARRLGVGSQLPQIALLTDG 213
A + G+ S +P + L +G
Sbjct: 60 DENPNTAAQYGIRS-IPTLLLFKNG 83
>2yzu_A Thioredoxin; redox protein, electron transport, structural
genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Length = 109
Score = 28.1 bits (63), Expect = 2.5
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 130 LSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLG-VGFFTVHV 188
+ T NF++ L+ F+++WC C + PI +++ E G + + V
Sbjct: 4 IEVTDQNFDE--TLGQ-HPLVLVDFWAEWCAPCRMIAPILEEIAKEYE--GKLLVAKLDV 58
Query: 189 HNEQGLARRLGVGSQLPQIALLTDG 213
A R V S +P + L DG
Sbjct: 59 DENPKTAMRYRVMS-IPTVILFKDG 82
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A
{Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB:
1rqm_A 1quw_A 1nw2_A
Length = 105
Score = 28.0 bits (63), Expect = 2.8
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 148 TPHLILFYSDWCFACLQVEPIFKKLMDELSPLG-VGFFTVHVHNEQGLARRLGVGSQLPQ 206
P L+ F++ WC C + P+ ++ + + V ++V + G+ S +P
Sbjct: 18 GPVLVDFWAAWCGPCRMMAPVLEEFAEAHA--DKVTVAKLNVDENPETTSQFGIMS-IPT 74
Query: 207 IALLTDGR 214
+ L GR
Sbjct: 75 LILFKGGR 82
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16;
DNAJ-fold, chaperone, protein transport; HET: FLC;
2.00A {Saccharomyces cerevisiae}
Length = 65
Score = 27.1 bits (60), Expect = 2.9
Identities = 6/39 (15%), Positives = 12/39 (30%), Gaps = 3/39 (7%)
Query: 25 LGVPR---TASLQEIRKNYKRLVVEWHPDKNNDPTAQEK 60
L + ++ +I + L +K Q K
Sbjct: 10 LNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSFYLQSK 48
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic
thioredoxin, oxidoreductase; NMR {Chlamydomonas
reinhardtii} SCOP: c.47.1.1
Length = 107
Score = 28.0 bits (63), Expect = 3.0
Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLG-VGFFTVHVHNEQGL 194
F+ + +S + P L+ F++ WC C + P+ ++ E + ++ +
Sbjct: 10 TFKNVVL-ES-SVPVLVDFWAPWCGPCRIIAPVVDEIAGEYK--DKLKCVKLNTDESPNV 65
Query: 195 ARRLGVGSQLPQIALLTDG 213
A G+ S +P I + G
Sbjct: 66 ASEYGIRS-IPTIMVFKGG 83
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP:
c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B*
1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B*
1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T*
2h6x_A ...
Length = 108
Score = 28.0 bits (63), Expect = 3.4
Identities = 18/79 (22%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLG-VGFFTVHVHNEQGL 194
+F+ + + K+ L+ F+++WC C + PI ++ DE G + +++ G
Sbjct: 11 SFDTDVL-KA-DGAILVDFWAEWCGPCKMIAPILDEIADEYQ--GKLTVAKLNIDQNPGT 66
Query: 195 ARRLGVGSQLPQIALLTDG 213
A + G+ +P + L +G
Sbjct: 67 APKYGIRG-IPTLLLFKNG 84
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport;
1.60A {Nostoc SP} SCOP: c.47.1.1
Length = 115
Score = 28.0 bits (63), Expect = 3.5
Identities = 14/79 (17%), Positives = 30/79 (37%), Gaps = 6/79 (7%)
Query: 136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLG-VGFFTVHVHNEQGL 194
FE + K+ P L+ F++ WC C + P+ + S + + +
Sbjct: 16 EFESEVL-KA-EQPVLVYFWASWCGPCQLMSPLINLAANTYS--DRLKVVKLEIDPNPTT 71
Query: 195 ARRLGVGSQLPQIALLTDG 213
++ V +P + L+
Sbjct: 72 VKKYKVEG-VPALRLVKGE 89
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative
splicing, FBP interacting repressor, RRM, electron
transport; 2.20A {Escherichia coli O157}
Length = 222
Score = 28.6 bits (64), Expect = 4.0
Identities = 23/103 (22%), Positives = 48/103 (46%), Gaps = 6/103 (5%)
Query: 136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLG-VGFFTVHVHNEQGL 194
+F+ + + K+ L+ F+++WC C + PI ++ DE G + +++ G
Sbjct: 21 SFDTDVL-KA-DGAILVDFWAEWCGPCKMIAPILDEIADEYQ--GKLTVAKLNIDQNPGT 76
Query: 195 ARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLP 237
A + G+ +P + L +G + K + S ++ EF L
Sbjct: 77 APKYGIRG-IPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA 118
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide,
acetylation, alternative initiation, cytoplasm, FAD,
flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A
{Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A*
1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A*
3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A*
1xan_A* 5grt_A* ...
Length = 478
Score = 29.0 bits (66), Expect = 4.6
Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 10/83 (12%)
Query: 445 KYGWLLGDAVDDWKDYNTTKDRLDAGLRSLVNDPYNNLLYDTALKEISDEYIQSLGVRIF 504
YG+ + +W+ K++ DA + L N +Y L + E I+
Sbjct: 84 DYGFPSCEGKFNWR---VIKEKRDAYVSRL------NAIYQNNLTKSHIEIIRGHA-AFT 133
Query: 505 NRIFMHIEMAQQSLSRQHILPAV 527
+ IE++ + + HIL A
Sbjct: 134 SDPKPTIEVSGKKYTAPHILIAT 156
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation,
thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A
{Desulfotalea psychrophila} PDB: 2uxr_A*
Length = 402
Score = 29.0 bits (64), Expect = 4.7
Identities = 9/43 (20%), Positives = 21/43 (48%)
Query: 89 FSGQDSASRNFHNHMYNPFDDVFSEGFNFPFEEHDISLFHKLS 131
F+ +D+ S+ + F+++F++ + F I F+ L
Sbjct: 206 FATKDTISKQYDQRFKIIFEEIFAQEYKEKFAAAGIEYFYTLI 248
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural
genomics, PSI, protein structure initiative; NMR
{Nitrosomonas europaea}
Length = 107
Score = 27.1 bits (60), Expect = 5.8
Identities = 9/87 (10%), Positives = 31/87 (35%), Gaps = 6/87 (6%)
Query: 128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVH 187
H + F+ + + L+++ + C C ++ + L + ++
Sbjct: 10 HSSGRENLYFQGH-MNNQVEPRKLVVYGREGCHLCEEMIASLRVLQKK---SWFELEVIN 65
Query: 188 VHNEQGLARRLGVGSQLPQIALLTDGR 214
+ + L R ++P + + + +
Sbjct: 66 IDGNEHLTRLYND--RVPVLFAVNEDK 90
>1v54_G Cytochrome C oxidase polypeptide VIA-heart; oxidoreductase; HET:
FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos
taurus} SCOP: f.23.2.1 PDB: 1v55_G* 2dyr_G* 2dys_G*
2eij_G* 2eik_G* 2eil_G* 2eim_G* 2ein_G* 2zxw_G* 3abk_G*
3abl_G* 3abm_G* 3ag1_G* 3ag2_G* 3ag3_G* 3ag4_G* 3asn_G*
3aso_G* 2occ_G* 1oco_G* ...
Length = 85
Score = 26.7 bits (59), Expect = 6.7
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 7/34 (20%)
Query: 116 NFPFEEHDISLFHKLSTTHWNFEKNYIPKSYTTP 149
F + + + + FH N N +P Y P
Sbjct: 59 PFSWGDGNHTFFH-------NPRVNPLPTGYEKP 85
>2y69_G Cytochrome C oxidase polypeptide 6A2; electron transport, complex
IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK
PGV DMU; 1.95A {Bos taurus}
Length = 97
Score = 26.8 bits (59), Expect = 7.7
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 7/34 (20%)
Query: 116 NFPFEEHDISLFHKLSTTHWNFEKNYIPKSYTTP 149
F + + + + FH N N +P Y P
Sbjct: 71 PFSWGDGNHTFFH-------NPRVNPLPTGYEKP 97
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase,
sulfur oxidation, thiol- disulfide oxidoreductase; HET:
MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Length = 116
Score = 26.9 bits (59), Expect = 7.9
Identities = 11/55 (20%), Positives = 17/55 (30%), Gaps = 5/55 (9%)
Query: 150 HLILFYSDWCFACLQ----VEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGV 200
L++F C C + + P + DE V + GL V
Sbjct: 21 RLLMFEQPGCLYCARWDAEIAPQYPL-TDEGRAAPVQRLQMRDPLPPGLELARPV 74
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 28.2 bits (64), Expect = 8.5
Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 16/100 (16%)
Query: 431 LHIAAMWRMDYKKI--KYGWLLGDAVDDWKDYNTTKDRLDAGLRSLVNDPYNNLLYDTAL 488
+ AA R YG+ +W+ T A + + + Y+ L
Sbjct: 53 MWHAAQIREAIHMYGPDYGFDTTINKFNWE---TLIASRTAYIDRI------HTSYENVL 103
Query: 489 KEISDEYIQSLGVRIFNRIFMH-IEMAQQSLSRQHILPAV 527
+ + + I+ R + +E+ ++++ HIL A
Sbjct: 104 GKNNVDVIKGFA-RFVDA---KTLEVNGETITADHILIAT 139
>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein,
periplasm, redox-active center, oxidoreductase; HET:
PGE; 1.55A {Escherichia coli} PDB: 3l9u_A
Length = 195
Score = 27.6 bits (60), Expect = 9.9
Identities = 9/40 (22%), Positives = 14/40 (35%)
Query: 149 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHV 188
LI +S C C + + + E V F H+
Sbjct: 19 KTLIKVFSYACPFCYKYDKAVTGPVSEKVKDIVAFTPFHL 58
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.416
Gapped
Lambda K H
0.267 0.0744 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,618,982
Number of extensions: 524135
Number of successful extensions: 1316
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1260
Number of HSP's successfully gapped: 160
Length of query: 554
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 456
Effective length of database: 3,965,535
Effective search space: 1808283960
Effective search space used: 1808283960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (26.9 bits)