BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16773
(124 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3SY69|AL1L2_HUMAN Mitochondrial 10-formyltetrahydrofolate dehydrogenase OS=Homo
sapiens GN=ALDH1L2 PE=1 SV=2
Length = 923
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 25/43 (58%), Positives = 30/43 (69%)
Query: 59 KCDLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKANRED 101
K L++A+IGQS F EVY L+K GH VVGVFTV DK + D
Sbjct: 20 KNKLKLALIGQSLFGQEVYSHLRKEGHRVVGVFTVPDKDGKAD 62
>sp|O75891|AL1L1_HUMAN Cytosolic 10-formyltetrahydrofolate dehydrogenase OS=Homo sapiens
GN=ALDH1L1 PE=1 SV=2
Length = 902
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/40 (60%), Positives = 29/40 (72%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKANRED 101
+++AVIGQS F EVY L+K GH VVGVFTV DK + D
Sbjct: 1 MKIAVIGQSLFGQEVYCHLRKEGHEVVGVFTVPDKDGKAD 40
>sp|Q8K009|AL1L2_MOUSE Mitochondrial 10-formyltetrahydrofolate dehydrogenase OS=Mus
musculus GN=Aldh1l2 PE=2 SV=2
Length = 923
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/53 (52%), Positives = 32/53 (60%)
Query: 49 RSGSKSSQIHKCDLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKANRED 101
R S S K L++A+IGQS F EVY L K GH VVGVFTV DK + D
Sbjct: 10 RHFSTSRVYFKNKLKLALIGQSLFGQEVYSQLLKEGHRVVGVFTVPDKDGKAD 62
>sp|P28037|AL1L1_RAT Cytosolic 10-formyltetrahydrofolate dehydrogenase OS=Rattus
norvegicus GN=Aldh1l1 PE=1 SV=3
Length = 902
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/40 (57%), Positives = 29/40 (72%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKANRED 101
+++AVIGQS F EVY L+K GH VVGVFT+ DK + D
Sbjct: 1 MKIAVIGQSLFGQEVYCQLRKEGHEVVGVFTIPDKDGKAD 40
>sp|Q8R0Y6|AL1L1_MOUSE Cytosolic 10-formyltetrahydrofolate dehydrogenase OS=Mus musculus
GN=Aldh1l1 PE=2 SV=1
Length = 902
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/40 (57%), Positives = 29/40 (72%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKANRED 101
+++AVIGQS F EVY L+K GH VVGVFT+ DK + D
Sbjct: 1 MKIAVIGQSLFGQEVYCQLRKEGHEVVGVFTIPDKDGKAD 40
>sp|Q63ZT8|AL1L1_XENTR Cytosolic 10-formyltetrahydrofolate dehydrogenase OS=Xenopus
tropicalis GN=aldh1l1 PE=2 SV=1
Length = 902
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/40 (57%), Positives = 29/40 (72%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKANRED 101
+++AVIGQS F EVY+ L K GH VVGVFT+ DK + D
Sbjct: 1 MKIAVIGQSLFGREVYRELLKEGHQVVGVFTIPDKNGKAD 40
>sp|Q6GNL7|AL1L1_XENLA Cytosolic 10-formyltetrahydrofolate dehydrogenase OS=Xenopus laevis
GN=aldh1l1 PE=2 SV=1
Length = 902
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/40 (57%), Positives = 29/40 (72%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKANRED 101
+++AVIGQS F EVY+ L K GH VVGVFT+ DK + D
Sbjct: 1 MKIAVIGQSLFGREVYRELLKEGHQVVGVFTIPDKNGKAD 40
>sp|Q5RFM9|AL1L1_PONAB Cytosolic 10-formyltetrahydrofolate dehydrogenase OS=Pongo abelii
GN=ALDH1L1 PE=2 SV=1
Length = 902
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 23/40 (57%), Positives = 28/40 (70%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKANRED 101
+++AVIGQS F EVY L+K GH VVG FTV DK + D
Sbjct: 1 MKIAVIGQSLFGQEVYCHLRKEGHEVVGGFTVPDKDGKAD 40
>sp|A6KWC4|FMT_BACV8 Methionyl-tRNA formyltransferase OS=Bacteroides vulgatus (strain
ATCC 8482 / DSM 1447 / NCTC 11154) GN=fmt PE=3 SV=1
Length = 324
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 57 IHKCDLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKA 97
+ K DLR+ +G FA E K L + G++VVGV T+ DK
Sbjct: 1 MEKKDLRIVYMGTPDFAVESLKRLVEGGYNVVGVITMPDKP 41
>sp|Q8A0S6|FMT_BACTN Methionyl-tRNA formyltransferase OS=Bacteroides thetaiotaomicron
(strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 /
VPI-5482) GN=fmt PE=3 SV=1
Length = 322
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 57 IHKCDLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKA 97
+ K DLR+ +G FA E + L + G++VVGV T+ DK
Sbjct: 1 MKKEDLRIVYMGTPDFAVEALRQLVEGGYNVVGVITMPDKP 41
>sp|Q64PD6|FMT_BACFR Methionyl-tRNA formyltransferase OS=Bacteroides fragilis (strain
YCH46) GN=fmt PE=3 SV=1
Length = 324
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 57 IHKCDLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKA 97
+ K DLR+ +G FA E + L + G++VVGV T+ DK
Sbjct: 1 MKKEDLRIVYMGTPDFAVEALQCLVEGGYNVVGVITMPDKP 41
>sp|Q5L975|FMT_BACFN Methionyl-tRNA formyltransferase OS=Bacteroides fragilis (strain
ATCC 25285 / NCTC 9343) GN=fmt PE=3 SV=1
Length = 324
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 57 IHKCDLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKA 97
+ K DLR+ +G FA E + L + G++VVGV T+ DK
Sbjct: 1 MKKEDLRIVYMGTPDFAVEALQCLVEGGYNVVGVITMPDKP 41
>sp|A6LCS5|FMT_PARD8 Methionyl-tRNA formyltransferase OS=Parabacteroides distasonis
(strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=fmt PE=3
SV=1
Length = 324
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 57 IHKCDLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96
+ K DLR+ +G FA E + L + G++VVGV T+ DK
Sbjct: 1 MKKEDLRIVYMGTPDFAVESLRALVEGGYNVVGVITMPDK 40
>sp|Q9WYZ8|FMT_THEMA Methionyl-tRNA formyltransferase OS=Thermotoga maritima (strain
ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=fmt PE=3
SV=1
Length = 313
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKA 97
+R+ +G FAAE+ + L KNG +VVGV T DK
Sbjct: 1 MRIVFVGTPEFAAEILEHLIKNGFNVVGVVTQPDKP 36
>sp|A5IJP6|FMT_THEP1 Methionyl-tRNA formyltransferase OS=Thermotoga petrophila (strain
RKU-1 / ATCC BAA-488 / DSM 13995) GN=fmt PE=3 SV=1
Length = 313
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKA 97
+R+ +G FAAE+ + L KNG +VVGV T DK
Sbjct: 1 MRIVFVGTPEFAAEILEHLIKNGFNVVGVVTQPDKP 36
>sp|B1L8W7|FMT_THESQ Methionyl-tRNA formyltransferase OS=Thermotoga sp. (strain RQ2)
GN=fmt PE=3 SV=1
Length = 313
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKA 97
+R+ +G FAAE+ + L KNG +VVGV T DK
Sbjct: 1 MRIVFVGTPEFAAEILEHLIKNGFNVVGVVTQPDKP 36
>sp|P0CL79|PYRE_PYRAB Orotate phosphoribosyltransferase OS=Pyrococcus abyssi (strain GE5
/ Orsay) GN=pyrE PE=3 SV=1
Length = 182
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 78 KLLKKNGHSVVGVFTVVDKAN--REDIVDEMYSLWRVALTATF 118
K+LK++G VVG+F VVD+ RE+I E + L+ + L +
Sbjct: 131 KILKEHGAEVVGIFVVVDREEGARENIEKEGFKLYPLVLVSDL 173
>sp|B9KBC2|FMT_THENN Methionyl-tRNA formyltransferase OS=Thermotoga neapolitana
(strain ATCC 49049 / DSM 4359 / NS-E) GN=fmt PE=3 SV=1
Length = 313
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKA 97
+RV +G FAAE+ + + K G ++VGV T DK
Sbjct: 1 MRVVFVGTPEFAAEILRYMVKKGINIVGVVTQPDKP 36
>sp|O58855|PYRE_PYRHO Orotate phosphoribosyltransferase OS=Pyrococcus horikoshii (strain
ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=pyrE PE=3 SV=1
Length = 186
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 7/99 (7%)
Query: 24 TWSFNGNRSLTLVRTIC--HPTGIVFRRSGSKSSQIHKCDLRVAVIGQSSFAAEVYKLLK 81
S N+ L +VR H TG V + K ++ + V G S A K+L+
Sbjct: 80 ALSLETNKPLLIVRKKKKEHGTGKVIEGNVQKGDKVLLVE-DVTTTGGSVIRA--AKILR 136
Query: 82 KNGHSVVGVFTVVDKAN--REDIVDEMYSLWRVALTATF 118
++G VVG+F VVD+ +E+I E + + + L +
Sbjct: 137 EHGADVVGIFVVVDREEGAKENIEKEGFKFYPLVLVSEL 175
>sp|Q0VTE2|FMT_ALCBS Methionyl-tRNA formyltransferase OS=Alcanivorax borkumensis
(strain SK2 / ATCC 700651 / DSM 11573) GN=fmt PE=3 SV=1
Length = 330
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKA 97
LR+A G FAA + + NGH VV V T D+A
Sbjct: 4 LRLAFAGTPDFAAASLQAVLDNGHQVVAVLTQPDRA 39
>sp|B4S5W8|PYRE_PROA2 Orotate phosphoribosyltransferase OS=Prosthecochloris aestuarii
(strain DSM 271 / SK 413) GN=pyrE PE=3 SV=1
Length = 193
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 66 VIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKAN-REDIVDEMYSLW 110
VI AEV +++K G +VGV TVVD++N + + D YSL
Sbjct: 116 VITTGGSVAEVIEIVKSYGGEIVGVGTVVDRSNGKVTLADNQYSLL 161
>sp|Q6D001|FMT_ERWCT Methionyl-tRNA formyltransferase OS=Erwinia carotovora subsp.
atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=fmt
PE=3 SV=1
Length = 315
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96
LR+ G FAA +L +GH VVGVFT D+
Sbjct: 5 LRIIFAGTPDFAARHLDVLLSSGHEVVGVFTQPDR 39
>sp|A8MH85|FMT_ALKOO Methionyl-tRNA formyltransferase OS=Alkaliphilus oremlandii
(strain OhILAs) GN=fmt PE=3 SV=1
Length = 310
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKA 97
+++ +G FA ++L +GH +VGVFT DK
Sbjct: 1 MKIIYMGTPEFAVPCLEMLIDSGHEIVGVFTQPDKP 36
>sp|C6DFR6|FMT_PECCP Methionyl-tRNA formyltransferase OS=Pectobacterium carotovorum
subsp. carotovorum (strain PC1) GN=fmt PE=3 SV=1
Length = 315
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96
LR+ G FAA L +GH VVGVFT D+
Sbjct: 5 LRIIFAGTPDFAARHLDALLSSGHEVVGVFTQPDR 39
>sp|B2U2Q5|FMT_SHIB3 Methionyl-tRNA formyltransferase OS=Shigella boydii serotype 18
(strain CDC 3083-94 / BS512) GN=fmt PE=3 SV=1
Length = 315
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96
LR+ G FAA L +GH+VVGVFT D+
Sbjct: 5 LRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDR 39
>sp|Q83PZ0|FMT_SHIFL Methionyl-tRNA formyltransferase OS=Shigella flexneri GN=fmt PE=3
SV=1
Length = 315
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96
LR+ G FAA L +GH+VVGVFT D+
Sbjct: 5 LRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDR 39
>sp|Q0T015|FMT_SHIF8 Methionyl-tRNA formyltransferase OS=Shigella flexneri serotype 5b
(strain 8401) GN=fmt PE=3 SV=1
Length = 315
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96
LR+ G FAA L +GH+VVGVFT D+
Sbjct: 5 LRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDR 39
>sp|Q3YWX2|FMT_SHISS Methionyl-tRNA formyltransferase OS=Shigella sonnei (strain
Ss046) GN=fmt PE=3 SV=1
Length = 315
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96
LR+ G FAA L +GH+VVGVFT D+
Sbjct: 5 LRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDR 39
>sp|B7M0Z3|FMT_ECO8A Methionyl-tRNA formyltransferase OS=Escherichia coli O8 (strain
IAI1) GN=fmt PE=3 SV=1
Length = 315
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96
LR+ G FAA L +GH+VVGVFT D+
Sbjct: 5 LRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDR 39
>sp|A7ZSH6|FMT_ECO24 Methionyl-tRNA formyltransferase OS=Escherichia coli O139:H28
(strain E24377A / ETEC) GN=fmt PE=3 SV=1
Length = 315
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96
LR+ G FAA L +GH+VVGVFT D+
Sbjct: 5 LRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDR 39
>sp|Q32B62|FMT_SHIDS Methionyl-tRNA formyltransferase OS=Shigella dysenteriae serotype
1 (strain Sd197) GN=fmt PE=3 SV=1
Length = 315
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96
LR+ G FAA L +GH+VVGVFT D+
Sbjct: 5 LRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDR 39
>sp|B7NLK7|FMT_ECO7I Methionyl-tRNA formyltransferase OS=Escherichia coli O7:K1
(strain IAI39 / ExPEC) GN=fmt PE=3 SV=1
Length = 315
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96
LR+ G FAA L +GH+VVGVFT D+
Sbjct: 5 LRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDR 39
>sp|Q31VY9|FMT_SHIBS Methionyl-tRNA formyltransferase OS=Shigella boydii serotype 4
(strain Sb227) GN=fmt PE=3 SV=1
Length = 315
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96
LR+ G FAA L +GH+VVGVFT D+
Sbjct: 5 LRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDR 39
>sp|B7LHY8|FMT_ECO55 Methionyl-tRNA formyltransferase OS=Escherichia coli (strain
55989 / EAEC) GN=fmt PE=3 SV=1
Length = 315
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96
LR+ G FAA L +GH+VVGVFT D+
Sbjct: 5 LRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDR 39
>sp|B7UK11|FMT_ECO27 Methionyl-tRNA formyltransferase OS=Escherichia coli O127:H6
(strain E2348/69 / EPEC) GN=fmt PE=3 SV=1
Length = 315
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96
LR+ G FAA L +GH+VVGVFT D+
Sbjct: 5 LRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDR 39
>sp|B7NDQ9|FMT_ECOLU Methionyl-tRNA formyltransferase OS=Escherichia coli O17:K52:H18
(strain UMN026 / ExPEC) GN=fmt PE=3 SV=1
Length = 315
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96
LR+ G FAA L +GH+VVGVFT D+
Sbjct: 5 LRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDR 39
>sp|B5YT07|FMT_ECO5E Methionyl-tRNA formyltransferase OS=Escherichia coli O157:H7
(strain EC4115 / EHEC) GN=fmt PE=3 SV=1
Length = 315
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96
LR+ G FAA L +GH+VVGVFT D+
Sbjct: 5 LRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDR 39
>sp|Q8X8F1|FMT_ECO57 Methionyl-tRNA formyltransferase OS=Escherichia coli O157:H7
GN=fmt PE=3 SV=3
Length = 315
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96
LR+ G FAA L +GH+VVGVFT D+
Sbjct: 5 LRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDR 39
>sp|B7LRQ4|FMT_ESCF3 Methionyl-tRNA formyltransferase OS=Escherichia fergusonii
(strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=fmt
PE=3 SV=1
Length = 315
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96
LR+ G FAA L +GH+VVGVFT D+
Sbjct: 5 LRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDR 39
>sp|B1LGP4|FMT_ECOSM Methionyl-tRNA formyltransferase OS=Escherichia coli (strain
SMS-3-5 / SECEC) GN=fmt PE=3 SV=1
Length = 315
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96
LR+ G FAA L +GH+VVGVFT D+
Sbjct: 5 LRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDR 39
>sp|P23882|FMT_ECOLI Methionyl-tRNA formyltransferase OS=Escherichia coli (strain K12)
GN=fmt PE=1 SV=4
Length = 315
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96
LR+ G FAA L +GH+VVGVFT D+
Sbjct: 5 LRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDR 39
>sp|B1IQ12|FMT_ECOLC Methionyl-tRNA formyltransferase OS=Escherichia coli (strain ATCC
8739 / DSM 1576 / Crooks) GN=fmt PE=3 SV=1
Length = 315
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96
LR+ G FAA L +GH+VVGVFT D+
Sbjct: 5 LRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDR 39
>sp|A8A592|FMT_ECOHS Methionyl-tRNA formyltransferase OS=Escherichia coli O9:H4
(strain HS) GN=fmt PE=3 SV=1
Length = 315
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96
LR+ G FAA L +GH+VVGVFT D+
Sbjct: 5 LRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDR 39
>sp|B1X6E0|FMT_ECODH Methionyl-tRNA formyltransferase OS=Escherichia coli (strain K12
/ DH10B) GN=fmt PE=3 SV=1
Length = 315
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96
LR+ G FAA L +GH+VVGVFT D+
Sbjct: 5 LRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDR 39
>sp|C4ZUE2|FMT_ECOBW Methionyl-tRNA formyltransferase OS=Escherichia coli (strain K12
/ MC4100 / BW2952) GN=fmt PE=3 SV=1
Length = 315
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96
LR+ G FAA L +GH+VVGVFT D+
Sbjct: 5 LRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDR 39
>sp|Q8ZLM6|FMT_SALTY Methionyl-tRNA formyltransferase OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=fmt PE=3 SV=3
Length = 315
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96
LR+ G FAA L +GH+VVGVFT D+
Sbjct: 5 LRIIFAGTPDFAARHLDALLTSGHNVVGVFTQPDR 39
>sp|B4TXB1|FMT_SALSV Methionyl-tRNA formyltransferase OS=Salmonella schwarzengrund
(strain CVM19633) GN=fmt PE=3 SV=1
Length = 315
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96
LR+ G FAA L +GH+VVGVFT D+
Sbjct: 5 LRIIFAGTPDFAARHLDALLTSGHNVVGVFTQPDR 39
>sp|B5BGV4|FMT_SALPK Methionyl-tRNA formyltransferase OS=Salmonella paratyphi A
(strain AKU_12601) GN=fmt PE=3 SV=1
Length = 315
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96
LR+ G FAA L +GH+VVGVFT D+
Sbjct: 5 LRIIFAGTPDFAARHLDALLTSGHNVVGVFTQPDR 39
>sp|C0PZV0|FMT_SALPC Methionyl-tRNA formyltransferase OS=Salmonella paratyphi C
(strain RKS4594) GN=fmt PE=3 SV=1
Length = 315
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96
LR+ G FAA L +GH+VVGVFT D+
Sbjct: 5 LRIIFAGTPDFAARHLDALLTSGHNVVGVFTQPDR 39
>sp|A9N8B2|FMT_SALPB Methionyl-tRNA formyltransferase OS=Salmonella paratyphi B
(strain ATCC BAA-1250 / SPB7) GN=fmt PE=3 SV=1
Length = 315
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96
LR+ G FAA L +GH+VVGVFT D+
Sbjct: 5 LRIIFAGTPDFAARHLDALLTSGHNVVGVFTQPDR 39
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.133 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,570,541
Number of Sequences: 539616
Number of extensions: 1350525
Number of successful extensions: 4457
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 4363
Number of HSP's gapped (non-prelim): 105
length of query: 124
length of database: 191,569,459
effective HSP length: 91
effective length of query: 33
effective length of database: 142,464,403
effective search space: 4701325299
effective search space used: 4701325299
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)